Query 004640
Match_columns 740
No_of_seqs 322 out of 3792
Neff 10.2
Searched_HMMs 29240
Date Tue Mar 26 18:20:10 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004640.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1938-1942//hhsearch_pdb/004640hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 528.4 46.9 640 1-665 54-753 (768)
2 1ziw_A TOLL-like receptor 3; i 1.0 1 1 488.0 47.8 612 1-679 29-670 (680)
3 3rgz_A Protein brassinosteroid 1.0 1 1 486.8 43.0 610 21-656 50-721 (768)
4 3j0a_A TOLL-like receptor 5; m 1.0 1 1 456.8 37.5 571 2-681 9-609 (844)
5 1ziw_A TOLL-like receptor 3; i 1.0 1 1 451.5 48.0 578 2-657 9-627 (680)
6 3t6q_A CD180 antigen; protein- 1.0 1 1 444.3 40.1 567 2-679 17-606 (606)
7 3j0a_A TOLL-like receptor 5; m 1.0 1 1 431.4 43.9 528 24-657 7-565 (844)
8 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 415.5 42.3 572 1-679 15-604 (606)
9 3t6q_A CD180 antigen; protein- 1.0 1 1 412.1 45.7 534 22-657 13-565 (606)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 396.9 39.4 508 22-658 12-564 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=528.40 Aligned_cols=640 Identities=30% Similarity=0.418 Sum_probs=416.0
Q ss_pred CEECCCCCCCCC---CCHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCC----CCCCCCCCEE
Q ss_conf 935489878962---311001799998997589988786694420899999999788986776311----4898899799
Q 004640 1 MLNLSGNSFNNT---ILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVV----SKGLRKLRYL 73 (740)
Q Consensus 1 ~L~Ls~n~i~~~---~~~~f~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~----~~~l~~L~~L 73 (740)
.|||+++.+.+. .+.+|.+++.|+.++++.+.+. .++ ..|..+++|++|+|++|.+++..+ +..+++|++|
T Consensus 54 ~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L 131 (768)
T 3rgz_A 54 SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFL 131 (768)
T ss_dssp EEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECC-CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEE
T ss_pred EEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC-CCC-HHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEE
T ss_conf 9877899867755766965731680224678688867-870-33245788998989898578707896787278899989
Q ss_pred ECCCCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCCCCCC---CCCCCCCCEEECCCCCCCC------CCCCCEEECCCC
Q ss_conf 867971463273011-399999899778888988689101---3899998899767987999------888759983678
Q 004640 74 SLSGIKLNHSILSSL-TVFSSLRELYLDDTGFKGTLDIRE---FDSFNNLEVLDMSYNKIDN------LVVPQELRLSDN 143 (740)
Q Consensus 74 ~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~---~~~l~~L~~L~L~~n~i~~------~~~L~~L~l~~n 143 (740)
++++|.+....+..+ .++++|++|++++|.+.+..+. . +.++++|++|++++|.+.+ .++|+.|++++|
T Consensus 132 ~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n 210 (768)
T 3rgz_A 132 NVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV-GWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSN 210 (768)
T ss_dssp ECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHH-HHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSS
T ss_pred ECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCH-HHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf 89688267747977856388999898979835885871-55664358988989897880346578454786898989288
Q ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCC
Q ss_conf 88686791111159888688722774551133334576787554389832778788764253215999889985999898
Q 004640 144 HFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMN 223 (740)
Q Consensus 144 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 223 (740)
.+.+.++. +..+++|++|++++|.+.......+ ....+|+.|++ ..+...+..|.. .+++|+.|++++|.+.
T Consensus 211 ~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~L-s~n~l~~~~~~~--~l~~L~~L~L~~n~l~ 282 (768)
T 3rgz_A 211 NFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAI---STCTELKLLNI-SSNQFVGPIPPL--PLKSLQYLSLAENKFT 282 (768)
T ss_dssp CCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHT---TTCSSCCEEEC-CSSCCEESCCCC--CCTTCCEEECCSSEEE
T ss_pred CCCCCCCC--CCCCCCCCEEECCCCCCCCCCCHHH---HCCCCCCEEEC-CCCCCCCCCCCC--CCCCCCEEECCCCCCC
T ss_conf 27887711--1269999989794885878165777---44888898989-888665716724--3687898979178557
Q ss_pred CCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 88735787539789789757873523476787788775999840571763489145530879648982278787577836
Q 004640 224 GEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSS 303 (740)
Q Consensus 224 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~ 303 (740)
+.+|..++..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|...+..+++|++|++++|.+.+..|..
T Consensus 283 ~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 362 (768)
T 3rgz_A 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362 (768)
T ss_dssp ESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT
T ss_pred CCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHH
T ss_conf 72588888446868899896896778423677558776677897885257379788724888878848478437623098
Q ss_pred CCCCC-CCCEEECCCCCCCCCCCHHHHH-CCCCCCEEECCCCCCCC-------------EEEECCCCCCCCCCCCCCCCC
Q ss_conf 77999-9869976367378888555662-79899399855776545-------------145117757999882222867
Q 004640 304 FGNMK-FLQLLDLSNNQLTGEIPEHLAV-GCVNLQFLMLSNNSLKE-------------GLYLTNNSLSGNIPGWLGNLT 368 (740)
Q Consensus 304 ~~~l~-~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~l~~n~~~~-------------~l~l~~n~~~~~~~~~~~~l~ 368 (740)
+..++ +|+.|++++|.+.+.++..... .+++|+.|++++|.+.. .+++++|.+.+..|..+..++
T Consensus 363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 442 (768)
T 3rgz_A 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442 (768)
T ss_dssp HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred HHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCC
T ss_conf 98632277199862787478767666533247761898977846542487775689879898958846685467774499
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 777588768824467741001669888998568718434899867-7776569846751453353445776076768844
Q 004640 369 WLIHIIMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDW 447 (740)
Q Consensus 369 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~ 447 (740)
+|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+. .+.|+.+++ ++|++.+.+|.+
T Consensus 443 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L-------------~~N~l~~~~p~~ 509 (768)
T 3rgz_A 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL-------------SNNRLTGEIPKW 509 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC-------------CSSCCCSCCCGG
T ss_pred CCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEC-------------CCCCCCCCCCHH
T ss_conf 8898989788154718978828777329990199513758878816998998975-------------399518968768
Q ss_pred HHHCCCCCEEECCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC----------CCCCC-C
Q ss_conf 550688878982687200027800139998987975488143368988556631010268899----------86211-1
Q 004640 448 IGELSQLSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSS----------LDEKF-E 516 (740)
Q Consensus 448 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~----------~~~~~-~ 516 (740)
+..+++|+.|++++|++.+..|..+..+++|+.|++++|++.+.+|..+.............. ..... .
T Consensus 510 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (768)
T 3rgz_A 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589 (768)
T ss_dssp GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred HHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 85689999898978943374887770889899898988846882795786042122320134542111134443222233
Q ss_pred C--------------CCCCCCCCCCCCCCCCHHE--EHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 2--------------2002488864001441010--00010035747985589577889614358655866866776257
Q 004640 517 I--------------SFFIEGPQGDFTTKNIAYI--YQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLT 580 (740)
Q Consensus 517 ~--------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 580 (740)
. .............+..... .....++.|+.|++++|.+++.+|..++.++.|+.|+|++|.++
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 669 (768)
T 3rgz_A 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669 (768)
T ss_dssp SEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCC
T ss_conf 22210013556323200232110011331004627433403356657978588015558778841415787848688038
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 56982324878788886657516755881232899999896678825223576431246567323468878889999999
Q 004640 581 GLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLPIC 660 (740)
Q Consensus 581 ~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~l~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~~c 660 (740)
+.+|..++++++|+.||+++|++++.+|..+..+++|+.+++++|++++.+|.. .++.++...++.|||.+|+.|...|
T Consensus 670 g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~l~~C 748 (768)
T 3rgz_A 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC 748 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTTSCCC
T ss_pred CCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC-HHHCCCCHHHHCCCCHHCCCCCCCC
T ss_conf 878967847778998989788023868867757887897879688155608996-0102489777569832108877678
Q ss_pred CCCCC
Q ss_conf 99999
Q 004640 661 RSPAT 665 (740)
Q Consensus 661 ~~~~~ 665 (740)
.....
T Consensus 749 ~~~~~ 753 (768)
T 3rgz_A 749 DPSNA 753 (768)
T ss_dssp CSCC-
T ss_pred CCCCC
T ss_conf 88766
No 2
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=487.98 Aligned_cols=612 Identities=21% Similarity=0.198 Sum_probs=445.0
Q ss_pred CEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEECCCC
Q ss_conf 935489878962311001799998997589988786694420899999999788986776311--489889979986797
Q 004640 1 MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVV--SKGLRKLRYLSLSGI 78 (740)
Q Consensus 1 ~L~Ls~n~i~~~~~~~f~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~--~~~l~~L~~L~L~~n 78 (740)
+||+++|.++++.+.+|.++++|++|++++|.++ .+++.+|..+++|++|++++|.++.+++ +.++++|++|++++|
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n 107 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred EEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCC-CCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCC
T ss_conf 8889899778759788717876758878899648-569778740667688889998567568545303888898989899
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC----------CCCCEEECCCCCCCCC
Q ss_conf 146327301139999989977888898868910138999988997679879998----------8875998367888686
Q 004640 79 KLNHSILSSLTVFSSLRELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNL----------VVPQELRLSDNHFRIP 148 (740)
Q Consensus 79 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~----------~~L~~L~l~~n~~~~~ 148 (740)
.+....+..|..+++|++|++++|.+.+..+. .+..+++|++|++++|.++.. ++++.|++++|.+.+
T Consensus 108 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~- 185 (680)
T 1ziw_A 108 SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE- 185 (680)
T ss_dssp CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC-
T ss_pred CCCCCCHHHCCCCCCCCEEECCCCCCCCCCCH-HHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCC-
T ss_conf 66853966741567888898989952466721-1124556777974588436529788624466632179888982565-
Q ss_pred CCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCCC--CCCEEECCCCCCCCCC
Q ss_conf 79111115988868872277455113333457678755438983277878876425321599--9889985999898887
Q 004640 149 ISLEPLFNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQH--DLEYVRLSHIKMNGEF 226 (740)
Q Consensus 149 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~ 226 (740)
+....+..+.+++.+++..+.+........+.......++.|++ ..+......+.++..+. +|+.|++++|.+.+..
T Consensus 186 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L-~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL-SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEEC-TTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEC-CCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCC
T ss_conf 58155532234455430566468056777877753151008874-57743646866751467677888778788767568
Q ss_pred CHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC--------CCCHHHHHCCCCCCEEECCCCCCCC
Q ss_conf 35787539789789757873523476787788775999840571763--------4891455308796489822787875
Q 004640 227 PNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRG--------HIPVEIGDVLPSLYVFNISMNALDG 298 (740)
Q Consensus 227 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~--------~~~~~~~~~~~~L~~L~L~~n~i~~ 298 (740)
+..+ ..+++|+.|++++|.+.+..+..+..+++|+.++++++...+ .++...+..+++|++|++++|.+.+
T Consensus 265 ~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 265 NDSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp TTTT-TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CCCC-CCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCC
T ss_conf 0211-674105685577885676586562678885577363313213333355454386562467778888798982687
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCC-CCCHHHHHC--CCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 778367799998699763673788-885556627--98993998557765451451177579998822228677775887
Q 004640 299 SIPSSFGNMKFLQLLDLSNNQLTG-EIPEHLAVG--CVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIM 375 (740)
Q Consensus 299 ~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~--l~~L~~L~l~~n~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l 375 (740)
..+..|..+++|++|++++|.+.. .++...|.. .++|+.|++++|.+. +..+..+..+++|+.|++
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~-----------~~~~~~~~~l~~L~~L~L 412 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS-----------KIESDAFSWLGHLEVLDL 412 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCC-----------EECTTTTTTCTTCCEEEC
T ss_pred CCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCC-----------EECHHHHHCCCCCCEEEC
T ss_conf 885574065687289887980144323532202455686766889999777-----------677544207788888867
Q ss_pred CCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 688244677-41001669888998568718434899867-7776569846751453353445776076768844550688
Q 004640 376 PENHLEGPI-PVEFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQ 453 (740)
Q Consensus 376 ~~n~~~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~ 453 (740)
++|.+.+.. +..|.++++|+.|++++|.+....+..+. .+.|+.+++++|.+... +..|..+..+++
T Consensus 413 ~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-----------~~~p~~~~~l~~ 481 (680)
T 1ziw_A 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV-----------DSSPSPFQPLRN 481 (680)
T ss_dssp CSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCT-----------TCSSCTTTTCTT
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCC-----------CCCCCCCCCCCC
T ss_conf 787575435755325754612784489975422764550075431011014644225-----------667764555787
Q ss_pred CCEEECCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 87898268720002780013999898797548814336898855663101026889986211122002488864001441
Q 004640 454 LSHLILGHNNLEGEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNI 533 (740)
Q Consensus 454 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (740)
|+.|++++|.+....+..|.++++|+.|++++|.+.+..+..+....
T Consensus 482 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~--------------------------------- 528 (680)
T 1ziw_A 482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP--------------------------------- 528 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC---------------------------------
T ss_pred CCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCC---------------------------------
T ss_conf 89998999987767944634553468885889973000000046774---------------------------------
Q ss_pred HHEEHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-
Q ss_conf 0100001003574798558957788961435865586686677625756982324878788886657516755881232-
Q 004640 534 AYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLV- 612 (740)
Q Consensus 534 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~l~- 612 (740)
......+++|+.|++++|.+..+.+..|.++++|+.|++++|.++.+++..|.++++|+.|++++|+++...+..+.
T Consensus 529 --~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 606 (680)
T 1ziw_A 529 --IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606 (680)
T ss_dssp --CCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHH
T ss_pred --CHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCC
T ss_conf --142337998888889999788779777346667522389999777679768378988888989999687059668301
Q ss_pred CCCCCCEEECCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89999989667882522357--64312465673234688788899999999999989766799878875
Q 004640 613 ELKTLEVFSVAYNNLSGEIL--EWTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNL 679 (740)
Q Consensus 613 ~l~~L~~l~l~~N~l~~~~~--~~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~ 679 (740)
.+++|+.+++++||+.|.|. .|+..|.......+.+. .....|..|+..++..+.+.+...+
T Consensus 607 ~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~-----~~~~~C~~p~~~~g~~l~~~~~~~~ 670 (680)
T 1ziw_A 607 AFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPEL-----SSHYLCNTPPHYHGFPVRLFDTSSC 670 (680)
T ss_dssp HHTTCSEEECTTCCCCBCCCCCSSEECCSSCC-------------------------------------
T ss_pred CCCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCC-----CCCCEECCCHHHCCCCCCCCCHHHC
T ss_conf 146657798318970257766899999987367643466-----6785779755988986415586646
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=486.83 Aligned_cols=610 Identities=26% Similarity=0.359 Sum_probs=479.4
Q ss_pred CCCCEEECCCCCCCCC---CCHHHCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCC--CCCCCCCC
Q ss_conf 9998997589988786---694420899999999788986776311-48988997998679714632730--11399999
Q 004640 21 SSLRSLNLNGNSLEGS---IDVKEFDSLRDLEELDIGENKIDKFVV-SKGLRKLRYLSLSGIKLNHSILS--SLTVFSSL 94 (740)
Q Consensus 21 ~~L~~L~Ls~n~i~~~---i~~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L 94 (740)
.+++.|+++++.+.+. ++ .++..+++|+.++++.+.+...+. +..+++|++|++++|.+.+..+. .+..+++|
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~-~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVS-SSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHH-HHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred CCEEEEECCCCCCCCCCCCCC-HHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCC
T ss_conf 927898778998677557669-6573168022467868886787033245788998989898578707896787278899
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-----------CCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEE
Q ss_conf 899778888988689101389999889976798799-----------988875998367888686791111159888688
Q 004640 95 RELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKID-----------NLVVPQELRLSDNHFRIPISLEPLFNHSRLKIF 163 (740)
Q Consensus 95 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~-----------~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 163 (740)
++|++++|.+.+..+...+..+++|++|++++|.++ ..++++.|++++|.+.+..+ +..+.+|++|
T Consensus 129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L 205 (768)
T 3rgz_A 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFL 205 (768)
T ss_dssp CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCCEE
T ss_pred CEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCC---CCCCCCCCEE
T ss_conf 9898968826774797785638899989897983588587155664358988989897880346578---4547868989
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECC
Q ss_conf 72277455113333457678755438983277878876425321599988998599989888735787539789789757
Q 004640 164 HAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKLATLFLV 243 (740)
Q Consensus 164 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 243 (740)
++++|.+...... .....+|+.|++ ..+.+.+..|..+..+++|+.|++++|.+.+..|.. .+++|++|+++
T Consensus 206 ~Ls~n~l~~~~~~----l~~l~~L~~L~L-s~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~ 277 (768)
T 3rgz_A 206 DVSSNNFSTGIPF----LGDCSALQHLDI-SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLA 277 (768)
T ss_dssp ECCSSCCCSCCCB----CTTCCSCCEEEC-CSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECC
T ss_pred ECCCCCCCCCCCC----CCCCCCCCEEEC-CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC---CCCCCCEEECC
T ss_conf 8928827887711----126999998979-488587816577744888898989888665716724---36878989791
Q ss_pred CCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCC-CCCCCCCCEEECCCCCCC
Q ss_conf 87352347678778-8775999840571763489145530879648982278787577836-779999869976367378
Q 004640 244 NDSLAGPFWLPIHS-HKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSS-FGNMKFLQLLDLSNNQLT 321 (740)
Q Consensus 244 ~~~~~~~~~~~~~~-~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~ 321 (740)
+|.+.+..+..+.. +++|+.|++++|.+.+.+|..+.. +++|++|++++|.+.+..|.. +..+++|++|++++|.+.
T Consensus 278 ~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~ 356 (768)
T 3rgz_A 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS-CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356 (768)
T ss_dssp SSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG-CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE
T ss_pred CCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHC-CCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCC
T ss_conf 785577258888844686889989689677842367755-8776677897885257379788724888878848478437
Q ss_pred CCCCHHHHHCCCCCCEEECCCCCCC---------------CEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 8885556627989939985577654---------------5145117757999882222867777588768824467741
Q 004640 322 GEIPEHLAVGCVNLQFLMLSNNSLK---------------EGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPV 386 (740)
Q Consensus 322 ~~~~~~~~~~l~~L~~L~l~~n~~~---------------~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 386 (740)
+.+|..+....++|+.|++++|.+. +.+++++|.+.+..|..+..+++|+.|++++|.+.+..|.
T Consensus 357 ~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~ 436 (768)
T 3rgz_A 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436 (768)
T ss_dssp ECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred CCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCH
T ss_conf 62309898632277199862787478767666533247761898977846542487775689879898958846685467
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEECCCCEEE
Q ss_conf 001669888998568718434899867-7776569846751453353445776076768844550688878982687200
Q 004640 387 EFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLE 465 (740)
Q Consensus 387 ~~~~l~~L~~L~l~~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 465 (740)
.+..+++|+.|++++|.+.+..|..+. .+.|+.+++++|. +.+..|..+..+++|+.|++++|++.
T Consensus 437 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-------------l~~~~p~~l~~l~~L~~L~L~~N~l~ 503 (768)
T 3rgz_A 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND-------------LTGEIPSGLSNCTNLNWISLSNNRLT 503 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-------------CCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred HHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCC-------------CCCCCCHHHHCCCCCCEEECCCCCCC
T ss_conf 77449988989897881547189788287773299901995-------------13758878816998998975399518
Q ss_pred ECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC--CCCCCC-CCC--------
Q ss_conf 0278001399989879754881433689885566310102688-9986211122002488--864001-441--------
Q 004640 466 GEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNS-SSLDEKFEISFFIEGP--QGDFTT-KNI-------- 533 (740)
Q Consensus 466 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~-~~~-------- 533 (740)
+..|..+..+++|+.|++++|++.+.+|..+..++.+...... +.+.+..+...+.... ...+.. ...
T Consensus 504 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (768)
T 3rgz_A 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSC
T ss_pred CCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCC
T ss_conf 96876885689999898978943374887770889899898988846882795786042122320134542111134443
Q ss_pred -------------HHE--EHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf -------------010--00010035747985589577889614358655866866776257569823248787888866
Q 004640 534 -------------AYI--YQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDL 598 (740)
Q Consensus 534 -------------~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 598 (740)
... .....++.+..++++.|.+.+..|..+..+++|+.|++++|++++.+|..+++++.|+.|++
T Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~L 663 (768)
T 3rgz_A 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNL 663 (768)
T ss_dssp CTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEEC
T ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEC
T ss_conf 22223322210013556323200232110011331004627433403356657978588015558778841415787848
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5751675588123289999989667882522357643124656732346887888999
Q 004640 599 SYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLP 656 (740)
Q Consensus 599 s~N~i~~~~~~~l~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~ 656 (740)
++|++++.+|+.+..+++|+.|++++|.+++.+|..+..+..+...++.+|+.....|
T Consensus 664 s~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred CCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf 6880388789678477789989897880238688677578878978796881556089
No 4
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=456.82 Aligned_cols=571 Identities=22% Similarity=0.202 Sum_probs=363.7
Q ss_pred EECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCCEEECCCCCC-CCCCC--CCCCCCCCEEECCCC
Q ss_conf 354898789623110017999989975899887866944208999999997889867-76311--489889979986797
Q 004640 2 LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKI-DKFVV--SKGLRKLRYLSLSGI 78 (740)
Q Consensus 2 L~Ls~n~i~~~~~~~f~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~~-~~~~~--~~~l~~L~~L~L~~n 78 (740)
.|.++++++.++. -.+++++||+++|.++ .+.+.+|..+++|++|++++|.. ..+++ +..+++|++|++++|
T Consensus 9 ~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 9 AFYRFCNLTQVPQ----VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEESCCCSSCCCS----SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EECCCCCCCCCCC----CCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCC
T ss_conf 9823799777898----9998688888778678-3296677662137088678997744419778537877888879899
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCC
Q ss_conf 14632730113999998997788889886891-01389999889976798799988875998367888686791111159
Q 004640 79 KLNHSILSSLTVFSSLRELYLDDTGFKGTLDI-REFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNH 157 (740)
Q Consensus 79 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 157 (740)
.+....+..|..+++|++|++++|.+.+.++. ..+..+++|++|++++|.++.. .....+..+
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~----------------~~~~~~~~L 147 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL----------------YLHPSFGKL 147 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC----------------CCCGGGGTC
T ss_pred CCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC----------------CCCHHHHHC
T ss_conf 5853197671578665870176788973404676455667999888987864232----------------566557638
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCCC------CCCEEECCCCCCCCCCCHHHH
Q ss_conf 88868872277455113333457678755438983277878876425321599------988998599989888735787
Q 004640 158 SRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQH------DLEYVRLSHIKMNGEFPNWLL 231 (740)
Q Consensus 158 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~~~~~~~ 231 (740)
++|+.|++++|.+.......+... ...+++.+++ ..+.+....+..+..+. .|+.+++++|.+.+..+..+.
T Consensus 148 ~~L~~L~Ls~N~i~~~~~~~l~~l-~~~~L~~L~L-~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 225 (844)
T 3j0a_A 148 NSLKSIDFSSNQIFLVCEHELEPL-QGKTLSFFSL-AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS 225 (844)
T ss_dssp SSCCEEEEESSCCCCCCSGGGHHH-HHCSSCCCEE-CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGG
T ss_pred CCCCEEECCCCCCCEECHHHCCCC-CCCCCCEEEC-CCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf 898989898984776678875355-6775035789-78866655455332237722357400796578868656778887
Q ss_pred HC--CCCCCEEECCCC---------CCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCC
Q ss_conf 53--978978975787---------3523476787788--7759998405717634891455308796489822787875
Q 004640 232 EN--NTKLATLFLVND---------SLAGPFWLPIHSH--KRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDG 298 (740)
Q Consensus 232 ~~--~~~L~~L~l~~~---------~~~~~~~~~~~~~--~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~ 298 (740)
.. ...++.+.+..+ .+.+.....+..+ ++++.|++++|.+. .++...+..+++|+.|++++|.+..
T Consensus 226 ~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~ 304 (844)
T 3j0a_A 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINK 304 (844)
T ss_dssp GTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC-EECSCCSSSCCCCCEEEEESCCCCE
T ss_pred HHCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCC-CCCHHHHHCCCCCCEEECCCCCCCC
T ss_conf 642744100112121223466444566889855652555478618989799455-1586345258999999897981898
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 77836779999869976367378888555662798993998557765451451177579998822228677775887688
Q 004640 299 SIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPEN 378 (740)
Q Consensus 299 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 378 (740)
..+..|..+++|+.|++++|.+. .+....+.++++|+.|++++|.+.. ..+..+..+++|+.|++++|
T Consensus 305 ~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~-----------~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 305 IADEAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAI-----------IQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp ECTTTTTTCSSCCEEEEESCCCS-CCCSCSCSSCTTCCEEECCSCCCCC-----------CCSSCSCSCCCCCEEEEETC
T ss_pred CCHHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCCCCCCC-----------CCHHHHCCCCCCCEEECCCC
T ss_conf 79688368889998989899788-5187884689999989898998776-----------28666137888999889899
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEE
Q ss_conf 24467741001669888998568718434899867777656984675145335344577607676884455068887898
Q 004640 379 HLEGPIPVEFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLI 458 (740)
Q Consensus 379 ~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~ 458 (740)
.+... ..+++|+.+++++|.+...... ...++.++++.|.+... ..+..+..+++|+.|+
T Consensus 373 ~l~~i-----~~~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l------------~~~~~~~~l~~L~~L~ 432 (844)
T 3j0a_A 373 ALTTI-----HFIPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENL------------DILYFLLRVPHLQILI 432 (844)
T ss_dssp CSCCC-----SSCCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSS------------TTHHHHTTCTTCCEEE
T ss_pred CCCCC-----CCCCCCCHHCCCCCCCCCCCCC---CCCCCEEECCCCCCCCC------------CHHHHHHCCCCCCEEE
T ss_conf 77861-----6889823200589972314554---55431221456753457------------5566651277666666
Q ss_pred CCCCEEEECCCC-CCCCCCCCCEEECCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 268720002780-01399989879754881433689-----885566310102688998621112200248886400144
Q 004640 459 LGHNNLEGEVPV-QLCELNQLQLLDLSNNSLHGSIP-----PCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKN 532 (740)
Q Consensus 459 L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (740)
+++|.+....+. .+..+++|+.|++++|.+....+ ..|..
T Consensus 433 Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~---------------------------------- 478 (844)
T 3j0a_A 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG---------------------------------- 478 (844)
T ss_dssp EESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSC----------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC----------------------------------
T ss_conf 7787125555433356687310024777736441013553555447----------------------------------
Q ss_pred CHHEEHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 10100001003574798558957788961435865586686677625756982324878788886657516755881232
Q 004640 533 IAYIYQGKVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLV 612 (740)
Q Consensus 533 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~l~ 612 (740)
+++|+.|+|++|.+++..+..|.++++|+.|+|++|+++++++..+. ++|+.|++++|++++..|+.+
T Consensus 479 ---------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~- 546 (844)
T 3j0a_A 479 ---------LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF- 546 (844)
T ss_dssp ---------BCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC-
T ss_pred ---------CCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHH-
T ss_conf ---------55365777889856553955704501221569999978745710110--045588898884788896683-
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8999998966788252235764312465673234688788899999-99999998976679987887555
Q 004640 613 ELKTLEVFSVAYNNLSGEILEWTAQFATFNKSSYEGNTFLCGLPLP-ICRSPATMSEASIGNERDDNLID 681 (740)
Q Consensus 613 ~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~n~~~c~~~~~-~c~~~~~~~~~~~~~~~~~~~~~ 681 (740)
.+|+.+++++||+.|.|+. .++..|. ...+...|+.+.. .|..|....+..+.+.....|..
T Consensus 547 --~~L~~l~l~~Np~~C~c~~--~~f~~~~---~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~C~~ 609 (844)
T 3j0a_A 547 --VSLSVLDITHNKFICECEL--STFINWL---NHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDE 609 (844)
T ss_dssp --SSCCEEEEEEECCCCSSSC--CSHHHHH---HHTTTTTCCCGGGCCCSSCSSSCSCCTTTCCCCCC--
T ss_pred --CCCCEEEECCCCCCCCCCC--HHHHHHH---HHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCC
T ss_conf --7768899319970253661--8999999---7368530266002755780665797200276122883
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=451.50 Aligned_cols=578 Identities=22% Similarity=0.221 Sum_probs=442.0
Q ss_pred EECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEECCCCC
Q ss_conf 35489878962311001799998997589988786694420899999999788986776311--4898899799867971
Q 004640 2 LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVV--SKGLRKLRYLSLSGIK 79 (740)
Q Consensus 2 L~Ls~n~i~~~~~~~f~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~--~~~l~~L~~L~L~~n~ 79 (740)
+|.++++++.++.. +. +++++|++++|.++ .+++.+|..+++|++|++++|.+++..+ +..+++|++|++++|.
T Consensus 9 ~~cs~~~L~~ip~~-~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 9 ADCSHLKLTQVPDD-LP--TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EECCSSCCSSCCSC-SC--TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred EECCCCCCCCCCCC-CC--CCCCEEECCCCCCC-CCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCC
T ss_conf 48777980526412-48--88768889899778-7597887178767588788996485697787406676888899985
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--------CCCCEEECCCCCCCCCCCH
Q ss_conf 46327301139999989977888898868910138999988997679879998--------8875998367888686791
Q 004640 80 LNHSILSSLTVFSSLRELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNL--------VVPQELRLSDNHFRIPISL 151 (740)
Q Consensus 80 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~--------~~L~~L~l~~n~~~~~~~~ 151 (740)
++..++..|..+++|++|++++|.+. .++...|.++++|++|++++|.++.. ++|+.|++++|.+.+. ..
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~ 162 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL-KS 162 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB-CH
T ss_pred CCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCC-CH
T ss_conf 67568545303888898989899668-53966741567888898989952466721112455677797458843652-97
Q ss_pred HHH--CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHH---CCCCCCEEECCCCCCCCCC
Q ss_conf 111--15988868872277455113333457678755438983277878876425321---5999889985999898887
Q 004640 152 EPL--FNHSRLKIFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLY---HQHDLEYVRLSHIKMNGEF 226 (740)
Q Consensus 152 ~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~~ 226 (740)
..+ ..+.+|+.++++++.+.......+ ....+++.+.+ ..+.........+. ..++++.|+++++.+.+..
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~l-~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~ 238 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEFSPGCF---HAIGRLFGLFL-NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCBCTTGG---GGSSEECEEEC-TTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC
T ss_pred HHHHCCCCCCCCEEECCCCCCCCCCHHHH---HHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 88624466632179888982565581555---32234455430-566468056777877753151008874577436468
Q ss_pred CHHHHHCCC--CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCC------
Q ss_conf 357875397--897897578735234767877887759998405717634891455308796489822787875------
Q 004640 227 PNWLLENNT--KLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDG------ 298 (740)
Q Consensus 227 ~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~------ 298 (740)
+..+ ..++ +|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..+..+ ..+++|+.|++++|....
T Consensus 239 ~~~~-~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~ 316 (680)
T 1ziw_A 239 NTTF-LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLAS 316 (680)
T ss_dssp TTTT-GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTT-TTCTTCCEEECTTCBCCC------
T ss_pred HHHH-HCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHH-CCCCCCCEEECCCHHHHCCCCCCC
T ss_conf 6675-14676778887787887675680211674105685577885676586562-678885577363313213333355
Q ss_pred ---CCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCC--CCCCCEE
Q ss_conf ---77836779999869976367378888555662798993998557765451451177579998822228--6777758
Q 004640 299 ---SIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGN--LTWLIHI 373 (740)
Q Consensus 299 ---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~~~~~~~~~~~~--l~~L~~L 373 (740)
+....|..+++|++|++++|.+. .++...+.++++|++|++++|.+.. .......+.. .++|+.+
T Consensus 317 lp~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~---------~~l~~~~f~~~~~~~L~~L 386 (680)
T 1ziw_A 317 LPKIDDFSFQWLKCLEHLNMEDNDIP-GIKSNMFTGLINLKYLSLSNSFTSL---------RTLTNETFVSLAHSPLHIL 386 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBC-CCCTTTTTTCTTCCEEECTTCBSCC---------CEECTTTTGGGTTSCCCEE
T ss_pred CCCCCHHHCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCCCCHHH---------HHCCHHHHCCCCCCCCCEE
T ss_conf 45438656246777888879898268-7885574065687289887980144---------3235322024556867668
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCC-CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 876882446774100166988899856871843489-9867-77765698467514533534457760767688445506
Q 004640 374 IMPENHLEGPIPVEFCQLYSLQILDISDNNISGSLP-SCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGEL 451 (740)
Q Consensus 374 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l 451 (740)
++++|.+....+..|..+++|+.|++++|.+.+..+ ..+. ...|+++++++|.+.. ..+..|..+
T Consensus 387 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-------------~~~~~~~~~ 453 (680)
T 1ziw_A 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ-------------LTRNSFALV 453 (680)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE-------------CCTTTTTTC
T ss_pred ECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCE-------------ECHHHHHCC
T ss_conf 8999977767754420778888886778757543575532575461278448997542-------------276455007
Q ss_pred CCCCEEECCCCEEE--ECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88878982687200--0278001399989879754881433689885566310102688998621112200248886400
Q 004640 452 SQLSHLILGHNNLE--GEVPVQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFT 529 (740)
Q Consensus 452 ~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (740)
++|+.|++++|.+. +..|..+..+++|+.|++++|.+.+..+..|..+.
T Consensus 454 ~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~----------------------------- 504 (680)
T 1ziw_A 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE----------------------------- 504 (680)
T ss_dssp TTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----------------------------
T ss_pred CCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCC-----------------------------
T ss_conf 543101101464422566776455578789998999987767944634553-----------------------------
Q ss_pred CCCCHHEEHHHHCCCCCEEECCCCCCCCCCC--------CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 1441010000100357479855895778896--------14358655866866776257569823248787888866575
Q 004640 530 TKNIAYIYQGKVLSLLSGLYLSCNKLIGHIP--------PQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYN 601 (740)
Q Consensus 530 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N 601 (740)
+|+.|++++|.+....+ ..|.++++|+.|++++|.++.+++..|.++++|+.|++++|
T Consensus 505 --------------~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 570 (680)
T 1ziw_A 505 --------------KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN 570 (680)
T ss_dssp --------------TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred --------------CCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCC
T ss_conf --------------468885889973000000046774142337998888889999788779777346667522389999
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 16755881232899999896678825223576431-246567323468878889999
Q 004640 602 KLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTA-QFATFNKSSYEGNTFLCGLPL 657 (740)
Q Consensus 602 ~i~~~~~~~l~~l~~L~~l~l~~N~l~~~~~~~~~-~~~~~~~~~~~~n~~~c~~~~ 657 (740)
+++.+.+..+..+++|+.+++++|.++...+..+. .+..+..+++.+|||.|+|+.
T Consensus 571 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 571 NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 777679768378988888989999687059668301146657798318970257766
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=444.34 Aligned_cols=567 Identities=19% Similarity=0.195 Sum_probs=361.6
Q ss_pred EECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEECCCCC
Q ss_conf 35489878962311001799998997589988786694420899999999788986776311--4898899799867971
Q 004640 2 LNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVV--SKGLRKLRYLSLSGIK 79 (740)
Q Consensus 2 L~Ls~n~i~~~~~~~f~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~--~~~l~~L~~L~L~~n~ 79 (740)
+|.++..++.++.. +. +.+++|++++|.++ .+++.+|..+++|++|++++|.++...+ +.++++|++|++++|.
T Consensus 17 ~~c~~~~l~~iP~~-l~--~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 17 YNCENLGLNEIPGT-LP--NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EECTTSCCSSCCTT-SC--TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EECCCCCCCCCCCC-CC--CCCCEEECCCCCCC-CCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCC
T ss_conf 77777980628677-89--86758981587347-1796672567665289788983552485113684336764488985
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--------CCCCEEECCCCCCCCCCCH
Q ss_conf 46327301139999989977888898868910138999988997679879998--------8875998367888686791
Q 004640 80 LNHSILSSLTVFSSLRELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNL--------VVPQELRLSDNHFRIPISL 151 (740)
Q Consensus 80 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~--------~~L~~L~l~~n~~~~~~~~ 151 (740)
+....+..|..+++|++|++++|.+. .++...+..+++|++|++++|.++.+ ++++.|++++|.+. .+..
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~ 170 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSK 170 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECH
T ss_pred CCCCCHHHHCCCCCCCEEECCCCCCC-CCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCH
T ss_conf 65458655234421537652126766-578101223782238988798341147654568765687776568445-5496
Q ss_pred HHHCCCCCCC--EEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC----C
Q ss_conf 1111598886--887227745511333345767875543898327787887642532159998899859998988----8
Q 004640 152 EPLFNHSRLK--IFHAKNNQMNAEITESHSLTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNG----E 225 (740)
Q Consensus 152 ~~~~~~~~L~--~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~----~ 225 (740)
..+..+.+++ .++++++.+....... +....++.+++ .++. ..+..+..+..+....+....+.+ .
T Consensus 171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~----~~~~~L~~L~l-~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~ 242 (606)
T 3t6q_A 171 EDMSSLQQATNLSLNLNGNDIAGIEPGA----FDSAVFQSLNF-GGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDED 242 (606)
T ss_dssp HHHHTTTTCCSEEEECTTCCCCEECTTT----TTTCEEEEEEC-TTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCC
T ss_pred HHHHHHCCCCEEEEECCCCCCCCCCHHH----HHHCCCCCCCC-CCCH---HHHHHHHHCCCCCHHHEECHHHCCCCCCC
T ss_conf 5633221564038966798147548667----30010013556-7726---67777651335644220020110264122
Q ss_pred CCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 73578753978978975787352347678778877599984057176348914553087964898227878757783677
Q 004640 226 FPNWLLENNTKLATLFLVNDSLAGPFWLPIHSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFG 305 (740)
Q Consensus 226 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~ 305 (740)
+....+..+. ..+++.+++++|.+. .++...+..+++|++|++++|.++ ..|..+.
T Consensus 243 i~~~~~~~l~----------------------~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~ 298 (606)
T 3t6q_A 243 ISPAVFEGLC----------------------EMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELPSGLV 298 (606)
T ss_dssp CCGGGGGGGG----------------------GSEEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCC
T ss_pred CCHHHHCHHH----------------------CCCEEEEEEECCCCC-CCCHHHHCCCCCCCEEECCCCCCC-CCCHHHC
T ss_conf 6866743032----------------------075059994457658-557777445667888956288267-7782141
Q ss_pred CCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-
Q ss_conf 9999869976367378888555662798993998557765451451177579998822228677775887688244677-
Q 004640 306 NMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPI- 384 (740)
Q Consensus 306 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~- 384 (740)
.+++|++|++++|.+. .++...+..+++|++|++++|.+.. ...+..+..+++|+.|++++|.+....
T Consensus 299 ~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 367 (606)
T 3t6q_A 299 GLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSIKGNTKRL----------ELGTGCLENLENLRELDLSHDDIETSDC 367 (606)
T ss_dssp SCTTCCEEECTTCCCS-BGGGGCGGGCTTCSEEECCSCSSCC----------BCCSSTTTTCTTCCEEECCSSCCCEEEE
T ss_pred CCCCCCEEECCCCCCC-CCCHHHHHCCCCCCEEECCCCCCCC----------CCCHHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf 6546888977168768-6760233015768988898997444----------3462455066758988788996664567
Q ss_pred -CCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEECCCC
Q ss_conf -41001669888998568718434899867-7776569846751453353445776076768844550688878982687
Q 004640 385 -PVEFCQLYSLQILDISDNNISGSLPSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHN 462 (740)
Q Consensus 385 -~~~~~~l~~L~~L~l~~n~i~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 462 (740)
+..+..+++|+.|++++|.+.+..+..+. .+.|+++++++|.+.+. ..+..+..+++|+.|++++|
T Consensus 368 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 368 CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK------------DAQSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC------------TTCCTTTTCTTCCEEECTTC
T ss_pred CCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC------------CCCHHHHCCCCCCEEECCCC
T ss_conf 522105678889898989967757888734774577687888867775------------65212417655888989898
Q ss_pred EEEECCCCCCCCCCCCCEEECCCCCCCCCC-C--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEHH
Q ss_conf 200027800139998987975488143368-9--8855663101026889986211122002488864001441010000
Q 004640 463 NLEGEVPVQLCELNQLQLLDLSNNSLHGSI-P--PCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQG 539 (740)
Q Consensus 463 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (740)
.+....+..+..+++|+.|++++|++.+.. + ..+..
T Consensus 436 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~----------------------------------------- 474 (606)
T 3t6q_A 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT----------------------------------------- 474 (606)
T ss_dssp CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG-----------------------------------------
T ss_pred CCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCC-----------------------------------------
T ss_conf 557768778737887888989899888543454312404-----------------------------------------
Q ss_pred HHCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 10035747985589577889614358655866866776257569823248787888866575167558812328999998
Q 004640 540 KVLSLLSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEV 619 (740)
Q Consensus 540 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~l~~l~~L~~ 619 (740)
+++|+.|++++|.+.+..|..|..+++|++|++++|++++..+..+.+++.| .|++++|++++..|+.+..+++|+.
T Consensus 475 --l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~ 551 (606)
T 3t6q_A 475 --LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRT 551 (606)
T ss_dssp --CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSE
T ss_pred --CCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCE
T ss_conf --8876688799996670686463265678889898980686896684756651-8987689414268766256778788
Q ss_pred EECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 96678825223576-4312465673234688788899999999999989766799878875
Q 004640 620 FSVAYNNLSGEILE-WTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNL 679 (740)
Q Consensus 620 l~l~~N~l~~~~~~-~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~ 679 (740)
+++++||+.|.|+. |+..|..-...... ......|..|...++..+.+.+..|+
T Consensus 552 L~l~~N~~~c~c~~~~~~~w~~~~~~~~~------~~~~~~C~~p~~~~g~~l~~~~~~c~ 606 (606)
T 3t6q_A 552 INLRQNPLDCTCSNIYFLEWYKENMQKLE------DTEDTLCENPPLLRGVRLSDVTLSCS 606 (606)
T ss_dssp EECTTCCEECSGGGHHHHHHHHHCGGGEE------CGGGCBEEESGGGTTCBGGGCCCCCC
T ss_pred EECCCCCCCCCCCCHHHHHHHHHCCCCCC------CCCCCEECCCHHHCCCEEEEEECCCC
T ss_conf 96779986166775789999973755336------77887369726868975563114679
No 7
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=431.41 Aligned_cols=528 Identities=20% Similarity=0.149 Sum_probs=355.7
Q ss_pred CEEECCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEECCCCCC-CCCCCCCCCCCCCCCEEECC
Q ss_conf 8997589988786694420899999999788986776311--48988997998679714-63273011399999899778
Q 004640 24 RSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVV--SKGLRKLRYLSLSGIKL-NHSILSSLTVFSSLRELYLD 100 (740)
Q Consensus 24 ~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~--~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~ 100 (740)
+..|.+++.++ .+| . -.+++++|+|++|.++.+.+ +..+++|++|++++|.. ..+.+.+|..+++|++|+++
T Consensus 7 ~~~dcs~~~L~-~vP-~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVP-Q---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSS-CCC-S---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred EEEECCCCCCC-CCC-C---CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECC
T ss_conf 48982379977-789-8---999868888877867832966776621370886789977444197785378778888798
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 88898868910138999988997679879998887599836788868679111115988868872277455113333457
Q 004640 101 DTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHSL 180 (740)
Q Consensus 101 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 180 (740)
+|.+.+..|. .|.++++|++|++++|.+++. ......+..+.+|++|++++|.+....... .
T Consensus 82 ~N~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~---------------~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~--~ 143 (844)
T 3j0a_A 82 SSKIYFLHPD-AFQGLFHLFELRLYFCGLSDA---------------VLKDGYFRNLKALTRLDLSKNQIRSLYLHP--S 143 (844)
T ss_dssp TCCCCEECTT-SSCSCSSCCCEECTTCCCSSC---------------CSTTCCCSSCSSCCEEEEESCCCCCCCCCG--G
T ss_pred CCCCCCCCHH-HCCCCCCCCEEECCCCCCCCC---------------CCCCCCCCCCCCCCEEECCCCCCCCCCCCH--H
T ss_conf 9958531976-715786658701767889734---------------046764556679998889878642325665--5
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCHHHHCC--CCCCEEECCCCCCCCCCCHHHHHCCC------CCCEEECCCCCCCCCCC
Q ss_conf 67875543898327787887642532159--99889985999898887357875397------89789757873523476
Q 004640 181 TAPNFQLQSLSLSSSYGDGVTFPKFLYHQ--HDLEYVRLSHIKMNGEFPNWLLENNT------KLATLFLVNDSLAGPFW 252 (740)
Q Consensus 181 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~------~L~~L~l~~~~~~~~~~ 252 (740)
.....+|+.|++ +++.+....+..+..+ ++|+.++++.|.+.+..+..+ ..++ .|+.|++++|.+.+..+
T Consensus 144 ~~~L~~L~~L~L-s~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 221 (844)
T 3j0a_A 144 FGKLNSLKSIDF-SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW-GKCMNPFRNMVLEILDVSGNGWTVDIT 221 (844)
T ss_dssp GGTCSSCCEEEE-ESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCC-CSSSCTTTTCCBSEEBCSSCCSSTTTT
T ss_pred HHHCCCCCEEEC-CCCCCCEECHHHCCCCCCCCCCEEECCCCCCCCCCCCCH-HHCCCCCCCCCEEEEECCCCCCCHHHH
T ss_conf 763889898989-898477667887535567750357897886665545533-223772235740079657886865677
Q ss_pred CCCCC---CCCCCEEECCCCCCCC--------CCCHHHHHC--CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 78778---8775999840571763--------489145530--8796489822787875778367799998699763673
Q 004640 253 LPIHS---HKRLGILDISNNNIRG--------HIPVEIGDV--LPSLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQ 319 (740)
Q Consensus 253 ~~~~~---~~~L~~L~ls~n~l~~--------~~~~~~~~~--~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 319 (740)
..+.. ...+..+.++.+.... ......+.. .++|+.|++++|.+....+..|..+++|+.|++++|.
T Consensus 222 ~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 301 (844)
T 3j0a_A 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301 (844)
T ss_dssp SGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC
T ss_pred HHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCC
T ss_conf 88876427441001121212234664445668898556525554786189897994551586345258999999897981
Q ss_pred CCCCCCHHHHHCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 78888555662798993998557765451451177579998822228677775887688244677410016698889985
Q 004640 320 LTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPIPVEFCQLYSLQILDI 399 (740)
Q Consensus 320 l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 399 (740)
+. .++...+.++++|+.|++++|.+. +..+..+.++++|+.|++++|.+....+..|..+++|+.|++
T Consensus 302 i~-~~~~~~~~~l~~L~~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 369 (844)
T 3j0a_A 302 IN-KIADEAFYGLDNLQVLNLSYNLLG-----------ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369 (844)
T ss_dssp CC-EECTTTTTTCSSCCEEEEESCCCS-----------CCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEE
T ss_pred CC-CCCHHHHCCCCCCCEEECCCCCCC-----------CCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 89-879688368889998989899788-----------518788468999998989899877628666137888999889
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEECCCCEEEECCC-CCCCCCCCC
Q ss_conf 6871843489986777765698467514533534457760767688445506888789826872000278-001399989
Q 004640 400 SDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVP-VQLCELNQL 478 (740)
Q Consensus 400 ~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L 478 (740)
++|.++.... .+.|+.+.+++|.+.. +|.. ...++.|++++|.+..... ..+..+++|
T Consensus 370 s~N~l~~i~~----~~~L~~L~l~~N~l~~--------------l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L 428 (844)
T 3j0a_A 370 RDNALTTIHF----IPSIPDIFLSGNKLVT--------------LPKI---NLTANLIHLSENRLENLDILYFLLRVPHL 428 (844)
T ss_dssp ETCCSCCCSS----CCSCSEEEEESCCCCC--------------CCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTC
T ss_pred CCCCCCCCCC----CCCCCHHCCCCCCCCC--------------CCCC---CCCCCEEECCCCCCCCCCHHHHHHCCCCC
T ss_conf 8997786168----8982320058997231--------------4554---55431221456753457556665127766
Q ss_pred CEEECCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEHHHHCCCCCEEECCCCCCC-
Q ss_conf 87975488143368988-5566310102688998621112200248886400144101000010035747985589577-
Q 004640 479 QLLDLSNNSLHGSIPPC-FDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLI- 556 (740)
Q Consensus 479 ~~L~L~~n~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~- 556 (740)
+.|++++|++.+..+.. +.. +++|+.|++++|.+.
T Consensus 429 ~~L~Ls~N~l~~~~~~~~~~~-------------------------------------------~~~L~~L~Ls~N~l~~ 465 (844)
T 3j0a_A 429 QILILNQNRFSSCSGDQTPSE-------------------------------------------NPSLEQLFLGENMLQL 465 (844)
T ss_dssp CEEEEESCCCCCCCSSSSSCS-------------------------------------------CTTCCBCEEESCCCSS
T ss_pred CEEECCCCCCCCCCCCCCCCC-------------------------------------------CCCCCCCCCCCCCCCC
T ss_conf 666677871255554333566-------------------------------------------8731002477773644
Q ss_pred ----CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf ----8896143586558668667762575698232487878888665751675588123289999989667882522357
Q 004640 557 ----GHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEIL 632 (740)
Q Consensus 557 ----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~l~~l~~L~~l~l~~N~l~~~~~ 632 (740)
+..+..|.++++|+.|+|++|.++++++..|.++++|+.|++++|+++...+..+. ++|+.|++++|.+++..+
T Consensus 466 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~ 543 (844)
T 3j0a_A 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNP 543 (844)
T ss_dssp SCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCS
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHHH--CCCCEEECCCCCCCCCCH
T ss_conf 101355355544755365777889856553955704501221569999978745710110--045588898884788896
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6431246567323468878889999
Q 004640 633 EWTAQFATFNKSSYEGNTFLCGLPL 657 (740)
Q Consensus 633 ~~~~~~~~~~~~~~~~n~~~c~~~~ 657 (740)
..+ ..+...++.+|||.|+|+.
T Consensus 544 ~~~---~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 544 DVF---VSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CCC---SSCCEEEEEEECCCCSSSC
T ss_pred HHH---CCCCEEEECCCCCCCCCCC
T ss_conf 683---7768899319970253661
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=415.51 Aligned_cols=572 Identities=19% Similarity=0.146 Sum_probs=399.9
Q ss_pred CEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEECCCC
Q ss_conf 935489878962311001799998997589988786694420899999999788986776311--489889979986797
Q 004640 1 MLNLSGNSFNNTILSSLTHLSSLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVV--SKGLRKLRYLSLSGI 78 (740)
Q Consensus 1 ~L~Ls~n~i~~~~~~~f~~l~~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~--~~~l~~L~~L~L~~n 78 (740)
++|.+++.++.++... . +.+++|++++|.++ .+++.+|..+++|++|++++|.++++++ +.++++|++|++++|
T Consensus 15 ~~~c~~~~l~~ip~~~-~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDI-P--SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp EEECTTSCCSSCCTTS-C--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CEECCCCCCCCCCCCC-C--CCCCEEECCCCCCC-EECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCC
T ss_conf 0574688845189888-8--87678878889757-737545557766748868877366439777306010688678798
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCC
Q ss_conf 14632730113999998997788889886891013899998899767987999888759983678886867911111598
Q 004640 79 KLNHSILSSLTVFSSLRELYLDDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHS 158 (740)
Q Consensus 79 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 158 (740)
.++...+..|..+++|++|++++|.+. .++...+..+++|++|++++|.++.. .+ ...+..+.
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~---------------~l-p~~~~~l~ 153 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSC---------------KL-PAYFSNLT 153 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCC---------------CC-CGGGGTCT
T ss_pred CCCCCCHHHCCCCCCCCEEECCCCCCC-CCCCCCCCCCCCCCEEECCCCCCCCE---------------EC-HHHHHHCC
T ss_conf 563048522078653788870377555-44511348988779896878852325---------------30-68673267
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCC-CCCEEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCC
Q ss_conf 886887227745511333345767875-5438983277878876425321599988998599989888735787539789
Q 004640 159 RLKIFHAKNNQMNAEITESHSLTAPNF-QLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTKL 237 (740)
Q Consensus 159 ~L~~L~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 237 (740)
+|++|+++++.+.......+....... .+..+++ ..+.+....+..+ ...+|+.+++++|.+.+......+.+++.+
T Consensus 154 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l-~~n~l~~~~~~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L 231 (606)
T 3vq2_A 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM-SLNPIDFIQDQAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGL 231 (606)
T ss_dssp TCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEEC-TTCCCCEECTTTT-TTCEEEEEEEESCCSCHHHHHHHHHTTTTC
T ss_pred CCCEEECCCCCCEECCHHHHHHHHCCCCCCCEEEC-CCCCCCEECCCCC-CCCEEEEEECCCCCCCHHHHHHHHCCCCCC
T ss_conf 77788766885310573341212034200243004-6897532571105-676043352467856166778886026656
Q ss_pred CEEECCCCCCCCC------CCCCCCCCC--CCCEEEC-CCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 7897578735234------767877887--7599984-057176348914553087964898227878757783677999
Q 004640 238 ATLFLVNDSLAGP------FWLPIHSHK--RLGILDI-SNNNIRGHIPVEIGDVLPSLYVFNISMNALDGSIPSSFGNMK 308 (740)
Q Consensus 238 ~~L~l~~~~~~~~------~~~~~~~~~--~L~~L~l-s~n~l~~~~~~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~ 308 (740)
+.+.+....+... ....+..+. .++.+++ ..+.+.+.++. +..+++|+.|+++++.+.. .+ .+..++
T Consensus 232 ~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-l~-~l~~~~ 307 (606)
T 3vq2_A 232 HVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKY-LE-DVPKHF 307 (606)
T ss_dssp EEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCC-CC-CCCTTC
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHEECCCCCCCCCCCCC--CCCCCCCCEEEECCCCCHH-HH-HCCCCC
T ss_conf 5231411110367741026817766665434745012366555543222--3548878987714766044-35-433401
Q ss_pred CCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--CCC
Q ss_conf 986997636737888855566279899399855776545145117757999882222867777588768824467--741
Q 004640 309 FLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGP--IPV 386 (740)
Q Consensus 309 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~ 386 (740)
+|+.|++++|.+. .+|. + .+++|+.|++++|.... +..+..+++|+.|++++|.+... .+.
T Consensus 308 ~L~~L~l~~n~l~-~lp~-~--~l~~L~~L~l~~n~~~~-------------~~~~~~l~~L~~L~ls~n~l~~~~~~~~ 370 (606)
T 3vq2_A 308 KWQSLSIIRCQLK-QFPT-L--DLPFLKSLTLTMNKGSI-------------SFKKVALPSLSYLDLSRNALSFSGCCSY 370 (606)
T ss_dssp CCSEEEEESCCCS-SCCC-C--CCSSCCEEEEESCSSCE-------------ECCCCCCTTCCEEECCSSCEEEEEECCH
T ss_pred CCCEEECCCCCCC-CCCC-C--CCCCCCEEECCCCCCCC-------------CHHHCCCCCCCEEECCCCCCCCCCCHHH
T ss_conf 1778976466676-5466-7--88755644544786853-------------1000248988879775873687752012
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC-HHHHHCCCCCEEECCCCEEE
Q ss_conf 00166988899856871843489986777765698467514533534457760767688-44550688878982687200
Q 004640 387 EFCQLYSLQILDISDNNISGSLPSCFHPLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIP-DWIGELSQLSHLILGHNNLE 465 (740)
Q Consensus 387 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~ 465 (740)
.+..+++|+.|++++|.+..........+.|+.+++++|.+.+ ..+ ..+..+++|+.|++++|.+.
T Consensus 371 ~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~~l~~L~~L~l~~n~l~ 437 (606)
T 3vq2_A 371 SDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR-------------VTEFSAFLSLEKLLYLDISYTNTK 437 (606)
T ss_dssp HHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEES-------------TTTTTTTTTCTTCCEEECTTSCCE
T ss_pred HHCCCCCCCEEECCCCCCCCCHHHCCCCCCCCEEECCCCCCCC-------------CCCHHHHHCCCCCCEEECCCCCCC
T ss_conf 2146775548678899530005540688888965898870587-------------537645646213788989689787
Q ss_pred ECCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEHHHHCCC
Q ss_conf 0278001399989879754881433-689885566310102688998621112200248886400144101000010035
Q 004640 466 GEVPVQLCELNQLQLLDLSNNSLHG-SIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSL 544 (740)
Q Consensus 466 ~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (740)
+..+..+..+++|+.|++++|.+.+ ..|..+..+. +
T Consensus 438 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-------------------------------------------~ 474 (606)
T 3vq2_A 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT-------------------------------------------N 474 (606)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-------------------------------------------T
T ss_pred CCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCC-------------------------------------------C
T ss_conf 433555347787898989898379854677604578-------------------------------------------8
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECC
Q ss_conf 74798558957788961435865586686677625756982324878788886657516755881232899-99989667
Q 004640 545 LSGLYLSCNKLIGHIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELK-TLEVFSVA 623 (740)
Q Consensus 545 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~l~~l~-~L~~l~l~ 623 (740)
|+.|++++|.+.+..+..|..+++|++|++++|++++..|..+.++++|+.|++++|+++. +|..+..++ +|+.++++
T Consensus 475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~ 553 (606)
T 3vq2_A 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLT 553 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECC
T ss_pred CCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCC-CCHHHHHHCCCCCEEECC
T ss_conf 9989898885776486561546468989898995787487770688768988898983766-687675210217488762
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8825223576-4312465673234688788899999999999989766799878875
Q 004640 624 YNNLSGEILE-WTAQFATFNKSSYEGNTFLCGLPLPICRSPATMSEASIGNERDDNL 679 (740)
Q Consensus 624 ~N~l~~~~~~-~~~~~~~~~~~~~~~n~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~ 679 (740)
+|++.|.|+. |+..|..-.... .-+.....|..|...++..+.+++...|
T Consensus 554 ~N~~~c~c~~~~~~~~l~~~~~~------~~~~~~~~C~~p~~~~~~~l~~~~~~~c 604 (606)
T 3vq2_A 554 NNSVACICEHQKFLQWVKEQKQF------LVNVEQMTCATPVEMNTSLVLDFNNSTC 604 (606)
T ss_dssp SCCCCCSSTTHHHHTTTTTSSSS------BSSGGGCCCC------------------
T ss_pred CCCCCCCCCCHHHHHHHHCCCCC------CCCCCCCEECCCHHHCCCEEEECCCCCC
T ss_conf 89866477648999998727640------0477661659775768987664460017
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=412.11 Aligned_cols=534 Identities=20% Similarity=0.186 Sum_probs=406.0
Q ss_pred CCCEEECCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 998997589988786694420899999999788986776311--489889979986797146327301139999989977
Q 004640 22 SLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVV--SKGLRKLRYLSLSGIKLNHSILSSLTVFSSLRELYL 99 (740)
Q Consensus 22 ~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 99 (740)
.-+.++.++..++ .+| ..+. ..+++|++++|.++.+++ +.++++|++|++++|.+....+.+|..+++|++|++
T Consensus 13 ~~~~~~c~~~~l~-~iP-~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 88 (606)
T 3t6q_A 13 VNKTYNCENLGLN-EIP-GTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVL 88 (606)
T ss_dssp TTTEEECTTSCCS-SCC-TTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCC-CCC-CCCC--CCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEEC
T ss_conf 8723777779806-286-7789--86758981587347179667256766528978898355248511368433676448
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 88889886891013899998899767987999888759983678886867911111598886887227745511333345
Q 004640 100 DDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHS 179 (740)
Q Consensus 100 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 179 (740)
++|.+.+..+. .|.++++|++|++++|.++.+ ....+..+.+|++|++++|.+.......
T Consensus 89 s~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~l-----------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~-- 148 (606)
T 3t6q_A 89 TANPLIFMAET-ALSGPKALKHLFFIQTGISSI-----------------DFIPLHNQKTLESLYLGSNHISSIKLPK-- 148 (606)
T ss_dssp TTCCCSEECTT-TTSSCTTCCEEECTTSCCSCG-----------------GGSCCTTCTTCCEEECCSSCCCCCCCCT--
T ss_pred CCCCCCCCCHH-HHCCCCCCCEEECCCCCCCCC-----------------CCCHHCCCCCCCEEECCCCCCCCCCCCC--
T ss_conf 89856545865-523442153765212676657-----------------8101223782238988798341147654--
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCC--EEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 7678755438983277878876425321599988--99859998988873578753978978975787352347678778
Q 004640 180 LTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLE--YVRLSHIKMNGEFPNWLLENNTKLATLFLVNDSLAGPFWLPIHS 257 (740)
Q Consensus 180 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~--~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 257 (740)
.....+|+.|++ .++.+....+..+..+++++ .+++++|.+.+..+..+ ....++.++++++.... ..+..
T Consensus 149 -~~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~~~~~~---~~~~~ 221 (606)
T 3t6q_A 149 -GFPTEKLKVLDF-QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFGGTQNLL---VIFKG 221 (606)
T ss_dssp -TCCCTTCCEEEC-CSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT--TTCEEEEEECTTCSCHH---HHHHH
T ss_pred -CCCCCCCCEEEC-CCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHH--HHCCCCCCCCCCCHHHH---HHHHH
T ss_conf -568765687776-568445549656332215640389667981475486673--00100135567726677---77651
Q ss_pred CCCCC--EEECCCC---CCCCCCCHHHHHCCC--CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHH
Q ss_conf 87759--9984057---176348914553087--9648982278787577836779999869976367378888555662
Q 004640 258 HKRLG--ILDISNN---NIRGHIPVEIGDVLP--SLYVFNISMNALDGSIPSSFGNMKFLQLLDLSNNQLTGEIPEHLAV 330 (740)
Q Consensus 258 ~~~L~--~L~ls~n---~l~~~~~~~~~~~~~--~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 330 (740)
+..+. .+.+... ... .++...+..+. +++.+++++|.+....+..|..+++|++|++++|.+. .+|..+ .
T Consensus 222 l~~~~l~~l~~~~~~~~~~~-~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l-~ 298 (606)
T 3t6q_A 222 LKNSTIQSLWLGTFEDMDDE-DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-V 298 (606)
T ss_dssp TTTCEEEEEECCCCTTSCCC-CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC-C
T ss_pred CCCCCHHHEECHHHCCCCCC-CCCHHHHCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHH-C
T ss_conf 33564422002011026412-26866743032075059994457658557777445667888956288267-778214-1
Q ss_pred CCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCC-
Q ss_conf 798993998557765451451177579998822228677775887688244677-410016698889985687184348-
Q 004640 331 GCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEGPI-PVEFCQLYSLQILDISDNNISGSL- 408 (740)
Q Consensus 331 ~l~~L~~L~l~~n~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~i~~~~- 408 (740)
.+++|++|++++|.+.. ..+..+..+++|+.|++++|.+.... +..+..+++|+.|++++|.+.+..
T Consensus 299 ~l~~L~~L~l~~n~l~~-----------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 367 (606)
T 3t6q_A 299 GLSTLKKLVLSANKFEN-----------LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367 (606)
T ss_dssp SCTTCCEEECTTCCCSB-----------GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEE
T ss_pred CCCCCCEEECCCCCCCC-----------CCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf 65468889771687686-----------7602330157689888989974443462455066758988788996664567
Q ss_pred -CCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEECCCCEEEECCCC-CCCCCCCCCEEECCC
Q ss_conf -99867-777656984675145335344577607676884455068887898268720002780-013999898797548
Q 004640 409 -PSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLILGHNNLEGEVPV-QLCELNQLQLLDLSN 485 (740)
Q Consensus 409 -~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~ 485 (740)
+..+. .+.|+++++++|.+.. ..+..+..+++|+.|++++|.+....+. .+..+++|+.|++++
T Consensus 368 ~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 368 CNLQLRNLSHLQSLNLSYNEPLS-------------LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434 (606)
T ss_dssp STTTTTTCTTCCEEECCSCSCEE-------------ECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTT
T ss_pred CCHHCCCCCCCCEEECCCCCCCC-------------CCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCC
T ss_conf 52210567888989898996775-------------78887347745776878888677756521241765588898989
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEHHHHCCCCCEEECCCCCCCCC---CCCC
Q ss_conf 8143368988556631010268899862111220024888640014410100001003574798558957788---9614
Q 004640 486 NSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQGKVLSLLSGLYLSCNKLIGH---IPPQ 562 (740)
Q Consensus 486 n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~ 562 (740)
|.+.+..+..+..+ ++|++|++++|.+.+. .+..
T Consensus 435 n~l~~~~~~~~~~l-------------------------------------------~~L~~L~L~~n~l~~~~~~~~~~ 471 (606)
T 3t6q_A 435 SLLDISSEQLFDGL-------------------------------------------PALQHLNLQGNHFPKGNIQKTNS 471 (606)
T ss_dssp CCCBTTCTTTTTTC-------------------------------------------TTCCEEECTTCBCGGGEECSSCG
T ss_pred CCCCCCCHHHHHCC-------------------------------------------CCCCEEECCCCCCCCCCCCCCHH
T ss_conf 85577687787378-------------------------------------------87888989899888543454312
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 35865586686677625756982324878788886657516755881232899999896678825223576431246567
Q 004640 563 IGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTLEVFSVAYNNLSGEILEWTAQFATFN 642 (740)
Q Consensus 563 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~l~~l~~L~~l~l~~N~l~~~~~~~~~~~~~~~ 642 (740)
+..+++|+.|++++|.+++..+..|.++++|+.|++++|++++..|+.+..++.| .+++++|+++...+..+..+..+.
T Consensus 472 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~ 550 (606)
T 3t6q_A 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQR 550 (606)
T ss_dssp GGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSS
T ss_pred HCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCC
T ss_conf 4048876688799996670686463265678889898980686896684756651-898768941426876625677878
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 323468878889999
Q 004640 643 KSSYEGNTFLCGLPL 657 (740)
Q Consensus 643 ~~~~~~n~~~c~~~~ 657 (740)
..++.+|||.|+|+.
T Consensus 551 ~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 551 TINLRQNPLDCTCSN 565 (606)
T ss_dssp EEECTTCCEECSGGG
T ss_pred EEECCCCCCCCCCCC
T ss_conf 896779986166775
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=396.88 Aligned_cols=508 Identities=19% Similarity=0.164 Sum_probs=337.1
Q ss_pred CCCEEECCCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 998997589988786694420899999999788986776311--489889979986797146327301139999989977
Q 004640 22 SLRSLNLNGNSLEGSIDVKEFDSLRDLEELDIGENKIDKFVV--SKGLRKLRYLSLSGIKLNHSILSSLTVFSSLRELYL 99 (740)
Q Consensus 22 ~L~~L~Ls~n~i~~~i~~~~~~~l~~L~~L~Ls~n~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 99 (740)
..++++.+++.++ .+|. .+. +++++|++++|.++++++ +.++++|++|++++|.++...+.+|..+++|++|++
T Consensus 12 ~~~~~~c~~~~l~-~ip~-~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~L 87 (606)
T 3vq2_A 12 PNITYQCMDQKLS-KVPD-DIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87 (606)
T ss_dssp TTTEEECTTSCCS-SCCT-TSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCEECCCCCCC-CCCC-CCC--CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEEC
T ss_conf 8970574688845-1898-888--87678878889757737545557766748868877366439777306010688678
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 88889886891013899998899767987999888759983678886867911111598886887227745511333345
Q 004640 100 DDTGFKGTLDIREFDSFNNLEVLDMSYNKIDNLVVPQELRLSDNHFRIPISLEPLFNHSRLKIFHAKNNQMNAEITESHS 179 (740)
Q Consensus 100 ~~n~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 179 (740)
++|.+.+..|. .|.++++|++|++++|.++.. +...+..+.+|++|++++|.+...
T Consensus 88 s~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~-----------------~~~~~~~l~~L~~L~L~~n~l~~~------ 143 (606)
T 3vq2_A 88 TGNPIQSFSPG-SFSGLTSLENLVAVETKLASL-----------------ESFPIGQLITLKKLNVAHNFIHSC------ 143 (606)
T ss_dssp TTCCCCCCCTT-SSTTCTTCCEEECTTSCCCCS-----------------SSSCCTTCTTCCEEECCSSCCCCC------
T ss_pred CCCCCCCCCHH-HCCCCCCCCEEECCCCCCCCC-----------------CCCCCCCCCCCCEEECCCCCCCCE------
T ss_conf 79856304852-207865378887037755544-----------------511348988779896878852325------
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCC----CCEEECCCCCCCCCCCCCC
Q ss_conf 767875543898327787887642532159998899859998988873578753978----9789757873523476787
Q 004640 180 LTAPNFQLQSLSLSSSYGDGVTFPKFLYHQHDLEYVRLSHIKMNGEFPNWLLENNTK----LATLFLVNDSLAGPFWLPI 255 (740)
Q Consensus 180 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~----L~~L~l~~~~~~~~~~~~~ 255 (740)
.+|..+..+++|+.|++++|.+.+..+..+ ..+.+ +..+++++|.+....+..+
T Consensus 144 ---------------------~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~~l~~L~l~~n~l~~~~~~~~ 201 (606)
T 3vq2_A 144 ---------------------KLPAYFSNLTNLVHVDLSYNYIQTITVNDL-QFLRENPQVNLSLDMSLNPIDFIQDQAF 201 (606)
T ss_dssp ---------------------CCCGGGGTCTTCCEEECCSSCCCEECTTTT-HHHHHCTTCCCEEECTTCCCCEECTTTT
T ss_pred ---------------------ECHHHHHHCCCCCEEECCCCCCEECCHHHH-HHHHCCCCCCCEEECCCCCCCEECCCCC
T ss_conf ---------------------306867326777788766885310573341-2120342002430046897532571105
Q ss_pred CCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEE--------------------------------C-CCCCCCCCCCC
Q ss_conf 78877599984057176348914553087964898--------------------------------2-27878757783
Q 004640 256 HSHKRLGILDISNNNIRGHIPVEIGDVLPSLYVFN--------------------------------I-SMNALDGSIPS 302 (740)
Q Consensus 256 ~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~L~~L~--------------------------------L-~~n~i~~~~~~ 302 (740)
... +|+.+++++|.+.+.........+++++.+. + ..+.+.+..+.
T Consensus 202 ~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~ 280 (606)
T 3vq2_A 202 QGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280 (606)
T ss_dssp TTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS
T ss_pred CCC-EEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHEECCCCCCCCCCCCC
T ss_conf 676-0433524678561667788860266565231411110367741026817766665434745012366555543222
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 67799998699763673788885556627989939985577654514511775799988222286777758876882446
Q 004640 303 SFGNMKFLQLLDLSNNQLTGEIPEHLAVGCVNLQFLMLSNNSLKEGLYLTNNSLSGNIPGWLGNLTWLIHIIMPENHLEG 382 (740)
Q Consensus 303 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 382 (740)
+..+++|+.+++++|.+. .++ .+..+++|+.|++++|.+. .+| .+ .+++|+.|++++|....
T Consensus 281 -~~~l~~L~~L~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l~------------~lp-~~-~l~~L~~L~l~~n~~~~ 342 (606)
T 3vq2_A 281 -FHCLANVSAMSLAGVSIK-YLE--DVPKHFKWQSLSIIRCQLK------------QFP-TL-DLPFLKSLTLTMNKGSI 342 (606)
T ss_dssp -CGGGTTCSEEEEESCCCC-CCC--CCCTTCCCSEEEEESCCCS------------SCC-CC-CCSSCCEEEEESCSSCE
T ss_pred -CCCCCCCCEEEECCCCCH-HHH--HCCCCCCCCEEECCCCCCC------------CCC-CC-CCCCCCEEECCCCCCCC
T ss_conf -354887898771476604-435--4334011778976466676------------546-67-88755644544786853
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCC--CCCCC-CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEC
Q ss_conf 77410016698889985687184348--99867-7776569846751453353445776076768844550688878982
Q 004640 383 PIPVEFCQLYSLQILDISDNNISGSL--PSCFH-PLSIEQVHLSKNMLHRQLKRDLSYNLLNGSIPDWIGELSQLSHLIL 459 (740)
Q Consensus 383 ~~~~~~~~l~~L~~L~l~~n~i~~~~--~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~n~~~~~~~~~~~~l~~L~~L~L 459 (740)
. ..+..+++|+.|++++|.+.+.. +..+. .+.|+++++++|.+.. .+..+..+++|+.|++
T Consensus 343 ~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~--------------~~~~~~~l~~L~~L~l 406 (606)
T 3vq2_A 343 S--FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII--------------MSANFMGLEELQHLDF 406 (606)
T ss_dssp E--CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE--------------ECCCCTTCTTCCEEEC
T ss_pred C--HHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC--------------CHHHCCCCCCCCEEEC
T ss_conf 1--00024898887977587368775201221467755486788995300--------------0554068888896589
Q ss_pred CCCEEEECCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEH
Q ss_conf 6872000278-001399989879754881433689885566310102688998621112200248886400144101000
Q 004640 460 GHNNLEGEVP-VQLCELNQLQLLDLSNNSLHGSIPPCFDNTTLYESYNNSSSLDEKFEISFFIEGPQGDFTTKNIAYIYQ 538 (740)
Q Consensus 460 ~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (740)
++|.+.+..+ ..+..+++|+.|++++|.+.+..|..+..+
T Consensus 407 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------------------------------------- 447 (606)
T 3vq2_A 407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL--------------------------------------- 447 (606)
T ss_dssp TTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC---------------------------------------
T ss_pred CCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCC---------------------------------------
T ss_conf 88705875376456462137889896897874335553477---------------------------------------
Q ss_pred HHHCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 0100357479855895778-896143586558668667762575698232487878888665751675588123289999
Q 004640 539 GKVLSLLSGLYLSCNKLIG-HIPPQIGNLTRIQTLNLSYNNLTGLIPSTFSNLKHIESLDLSYNKLNGKIPHQLVELKTL 617 (740)
Q Consensus 539 ~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~l~~l~~L 617 (740)
++|+.|++++|.+.+ ..|..|..+++|++|++++|.+++..+..|.++++|++|++++|++++..|..+..+++|
T Consensus 448 ----~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 523 (606)
T 3vq2_A 448 ----TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523 (606)
T ss_dssp ----TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred ----CCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCC
T ss_conf ----8789898989837985467760457889989898885776486561546468989898995787487770688768
Q ss_pred CEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 9896678825223576431246-5673234688788899999
Q 004640 618 EVFSVAYNNLSGEILEWTAQFA-TFNKSSYEGNTFLCGLPLP 658 (740)
Q Consensus 618 ~~l~l~~N~l~~~~~~~~~~~~-~~~~~~~~~n~~~c~~~~~ 658 (740)
+.+++++|+++. .+.++..+. .+...++.+|||.|+|+..
T Consensus 524 ~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 524 STLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp CEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CEEECCCCCCCC-CCHHHHHHCCCCCEEECCCCCCCCCCCCH
T ss_conf 988898983766-68767521021748876289866477648
Done!