Query 004641
Match_columns 740
No_of_seqs 305 out of 2297
Neff 4.6
Searched_HMMs 29240
Date Tue Mar 26 18:36:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004641.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1938-1942//hhsearch_pdb/004641hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lz8_A Putative chaperone DNAJ 1.0 1 1 207.1 0.0 199 439-692 27-234 (329)
2 1nlt_A Protein YDJ1, mitochond 1.0 1 1 156.9 0.8 132 545-693 30-165 (248)
3 3apo_A DNAJ homolog subfamily 1.0 1 1 145.5 0.6 69 440-510 21-89 (780)
4 2l6l_A DNAJ homolog subfamily 1.0 1 1 144.5 7.0 71 440-512 10-86 (155)
5 3apq_A DNAJ homolog subfamily 1.0 1 1 140.2 5.4 69 440-510 2-70 (210)
6 2ctq_A DNAJ homolog subfamily 1.0 1 1 139.8 6.8 69 440-510 20-88 (112)
7 2yua_A Williams-beuren syndrom 1.0 1 1 139.1 7.3 70 440-511 17-86 (99)
8 2ctw_A DNAJ homolog subfamily 1.0 1 1 136.0 8.7 69 440-510 17-85 (109)
9 1bq0_A DNAJ, HSP40; chaperone, 1.0 1 1 135.7 2.7 68 440-509 3-70 (103)
10 1wjz_A 1700030A21RIK protein; 1.0 1 1 134.5 4.9 68 440-509 16-89 (94)
No 1
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=1.00 E-value=1 Score=207.11 Aligned_cols=199 Identities=20% Similarity=0.259 Sum_probs=117.4
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78841013755689999789999999999972999999917999999999999998643113332115666666566542
Q 004641 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLDYFR 518 (740)
Q Consensus 439 ~~d~YeILGV~~~~~As~~eIKkAYRkLAlk~HPDKn~~~p~A~e~Fk~I~~AYevLsDp~kR~~YD~~~~~e~~~d~F~ 518 (740)
.+|||+||||++ +|+.+|||+|||+||++||||+++. +.|+++|++|++||++|+||.+|+.||.++.... ...|.
T Consensus 27 ~~d~Y~vLgv~~--~as~~eIk~aYr~la~~~HPDk~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~-~~~~~ 102 (329)
T 3lz8_A 27 LKDYYAILGVQP--TDDLKTIKTAYRRLARKYHPDVSKE-NDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRN-DPGFG 102 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHCCCCC--CCCHHHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCC-CCCCC
T ss_conf 469799839699--9999999999999999878898998-4799999999999998541310023351112466-77756
Q ss_pred H-CC--CCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC-E
Q ss_conf 0-02--556-67997653489999998888998775322125444564213430257665433623212245558993-4
Q 004641 519 R-FQ--SAS-QKNGRHGFFGSGYARSEADCDDPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDG-W 593 (740)
Q Consensus 519 ~-F~--g~~-~~~G~~GfFgggfgrseg~dEd~i~isr~V~C~kC~GsG~~~~T~k~~skar~C~sCk~~H~akdGsG-~ 593 (740)
. |. +.. ...++.++|...|+. .|.+ ... . . + ..|.- .
T Consensus 103 ~~~~~~~~~f~~~~f~diF~~~Fg~--------------------~g~~-----~~~-~----~-------~-~~g~Dl~ 144 (329)
T 3lz8_A 103 RQRQTHEQSYSQQDFDDIFSSMFGQ--------------------QAHQ-----RRR-Q----H-------A-ARGHDLE 144 (329)
T ss_dssp -----------------------------------------------------------------------C-CCCCCEE
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHCC--------------------CCCC-----CCC-C----C-------C-CCCCCEE
T ss_conf 6665556776777534556765067--------------------6778-----877-7----7-------6-7887779
Q ss_pred EEE--EECCCCCEEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCC-CCCCCCCCCCCCCCCC
Q ss_conf 996--5216640235998603455569942873656535899700364027799875654689-9534467889999999
Q 004641 594 VEQ--SSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVNTSVTSK-HNTSKGTSSGQRGGRM 670 (740)
Q Consensus 594 Ve~--~~q~~~fGm~qqie~tC~y~C~GsGv~d~teCa~CqG~G~v~~t~~vsV~IPaGV~d~-~~rikg~g~~~r~g~~ 670 (740)
++. .......|....+..++. .|. +.|...++..+.++|+||+|+.++ ..|++|.|..+.+|+.
T Consensus 145 ~~l~vsleea~~G~~k~i~i~~~-v~~------------g~G~v~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~~gg~ 211 (329)
T 3lz8_A 145 IEVAVFLEETLAEQTRTISYNLP-VYN------------VFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENGGP 211 (329)
T ss_dssp EEECCCTTGGGSCEEEEEEEEEE-ECC------------SCC-CCEEEEEEEEEEECTTCCTTCEEEESSCSCCC---CC
T ss_pred EEEECCHHHHHHCCCEEEEEEEE-EEC------------CCEEEEEECCEEEEEECCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf 99842345454325527999877-514------------87079996046999967999999978998552167879999
Q ss_pred CCCCCCC-CCCHHHHHHHHHHHH
Q ss_conf 9983236-888468999999987
Q 004641 671 PPPNLEE-TMTEDEFLEWLQNAV 692 (740)
Q Consensus 671 pgdl~~e-~m~e~eff~wlq~a~ 692 (740)
|||+++. .+.+|++|.+.-++|
T Consensus 212 ~GDL~v~I~v~~h~~F~R~G~DL 234 (329)
T 3lz8_A 212 NGDLWLVIHIAPHPLFDIVGHNL 234 (329)
T ss_dssp CCCEEEEECCCCCSSCEEETTEE
T ss_pred CCCEEEEEEEECCCCCEECCCCE
T ss_conf 87689999995177507728818
No 2
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=1.00 E-value=1 Score=156.85 Aligned_cols=132 Identities=17% Similarity=0.284 Sum_probs=108.0
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCEEEC
Q ss_conf 99877532212544456421343025766543362321224555899349965216640235998603455569942873
Q 004641 545 DDPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN 624 (740)
Q Consensus 545 Ed~i~isr~V~C~kC~GsG~~~~T~k~~skar~C~sCk~~H~akdGsG~Ve~~~q~~~fGm~qqie~tC~y~C~GsGv~d 624 (740)
++.+.+.+.+.|..|+|+| +.++. ...|+.|+ |+|++... +++++ |+++++.+|+ .|.|.|.+.
T Consensus 30 ~k~i~~~r~~~C~~C~G~G-----~~~g~-~~~C~~C~-------G~G~~~~~-~~~g~-~~~~~~~~C~-~C~G~G~~i 93 (248)
T 1nlt_A 30 TAKLALNKQILCKECEGRG-----GKKGA-VKKCTSCN-------GQGIKFVT-RQMGP-MIQRFQTECD-VCHGTGDII 93 (248)
T ss_dssp EEEEEEEEEEECTTTTTCS-----BSTTT-CCCCTTSS-------SSSCEEEE-EESSS-EEEEEECSCT-TCSSSSSCC
T ss_pred EEEEEEEEEEECCCCCCCC-----CCCCC-CCCCCCCC-------CCCEEEEE-EECCC-EEEEEEECCC-CCCCCCEEE
T ss_conf 6898744777689971745-----77898-75588878-------97479799-96274-4878887288-877768780
Q ss_pred --CCCCCCCCCCCCCCCEEEEEEEECCCCCCC-CCCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHH
Q ss_conf --656535899700364027799875654689-95344678899999999983236-8884689999999876
Q 004641 625 --ATDWYICQGMRCPANTHKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWLQNAVQ 693 (740)
Q Consensus 625 --~teCa~CqG~G~v~~t~~vsV~IPaGV~d~-~~rikg~g~~~r~g~~pgdl~~e-~m~e~eff~wlq~a~~ 693 (740)
.++|..|+|.|++.+++.++|+||+|+.++ ..+++|.|+...+ +.||||++. .+.+|++|++.-++|.
T Consensus 94 ~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~-g~~GDl~v~i~v~~h~~F~R~G~DL~ 165 (248)
T 1nlt_A 94 DPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPD-VIPGDVVFIVSERPHKSFKRDGDDLV 165 (248)
T ss_dssp CTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCTT-CBCCCEEEEEEECCCSSCEEETTEEE
T ss_pred CCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEEEECCCCC-CCCCEEEEEEEEECCCCCEEECCEEE
T ss_conf 4677775568984086647899997999618979999210357899-87521999999803865311389788
No 3
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=1.00 E-value=1 Score=145.52 Aligned_cols=69 Identities=38% Similarity=0.568 Sum_probs=65.3
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88410137556899997899999999999729999999179999999999999986431133321156666
Q 004641 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 510 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKkAYRkLAlk~HPDKn~~~p~A~e~Fk~I~~AYevLsDp~kR~~YD~~~~~ 510 (740)
.|||+||||++ +|+.++||+|||+|++++||||+++++++.++|++|++||++|+||.+|+.||.++..
T Consensus 21 ~~~y~~lg~~~--~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~ 89 (780)
T 3apo_A 21 QNFYSLLGVSK--TASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEK 89 (780)
T ss_dssp --CHHHHTCCT--TCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC---
T ss_pred CCHHHHCCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
T ss_conf 99899809899--9999999999999999878698999757999999999999997176888988764112
No 4
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=144.49 Aligned_cols=71 Identities=28% Similarity=0.531 Sum_probs=64.0
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8841013755689999789999999999972999999917------999999999999998643113332115666666
Q 004641 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE------KAVEAFKKLQNAYEVLFDSFKRKAYDDELRREE 512 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKkAYRkLAlk~HPDKn~~~p------~A~e~Fk~I~~AYevLsDp~kR~~YD~~~~~e~ 512 (740)
.|||+||||++ +++.++||+|||+|++++||||++.++ .|.+.|++|++||++|+||.+|+.||..+....
T Consensus 10 ~~~y~iLgv~~--~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~~ 86 (155)
T 2l6l_A 10 KDWYSILGADP--SANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCEDD 86 (155)
T ss_dssp SHHHHHHTCCT--TCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHHH
T ss_pred CCHHHHCCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHH
T ss_conf 98257538999--979999999999999987819898887556789999999999999998479899999999735312
No 5
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=1.00 E-value=1 Score=140.16 Aligned_cols=69 Identities=38% Similarity=0.568 Sum_probs=65.0
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88410137556899997899999999999729999999179999999999999986431133321156666
Q 004641 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 510 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKkAYRkLAlk~HPDKn~~~p~A~e~Fk~I~~AYevLsDp~kR~~YD~~~~~ 510 (740)
.|||+||||++ +|+.++||+|||+|++++|||++++++++.++|++|++||++|+||.+|+.||.++..
T Consensus 2 ~~~y~~l~~~~--~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~ 70 (210)
T 3apq_A 2 QNFYSLLGVSK--TASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEK 70 (210)
T ss_dssp CCHHHHHTCCT--TCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTT
T ss_pred CCHHHHCCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
T ss_conf 78799869999--9899999999999999879598999758999999999999996799999999875232
No 6
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=139.83 Aligned_cols=69 Identities=39% Similarity=0.536 Sum_probs=65.4
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88410137556899997899999999999729999999179999999999999986431133321156666
Q 004641 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 510 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKkAYRkLAlk~HPDKn~~~p~A~e~Fk~I~~AYevLsDp~kR~~YD~~~~~ 510 (740)
.|||+||||++ +++.++||+|||+|++++|||++++++.+.+.|++|++||++|+||.+|+.||.++..
T Consensus 20 ~d~Y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~ 88 (112)
T 2ctq_A 20 EDYYTLLGCDE--LSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRS 88 (112)
T ss_dssp CCHHHHTTCCT--TSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred CCHHHHCCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999849999--9899999999999999888398999679999999999999998898899999986311
No 7
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=139.06 Aligned_cols=70 Identities=33% Similarity=0.574 Sum_probs=65.5
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 884101375568999978999999999997299999991799999999999999864311333211566666
Q 004641 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE 511 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKkAYRkLAlk~HPDKn~~~p~A~e~Fk~I~~AYevLsDp~kR~~YD~~~~~e 511 (740)
.|||+||||++ +++.++||+|||+|++++|||+++.++.+.+.|++|++||++|+||.+|+.||..+...
T Consensus 17 ~~~Y~vLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~ 86 (99)
T 2yua_A 17 TALYDLLGVPS--TATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSD 86 (99)
T ss_dssp SHHHHHHTCCT--TCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCCH
T ss_pred CCHHHHCCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC
T ss_conf 69988829999--98999999999999999883989997899999999999999987989999999863220
No 8
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=136.02 Aligned_cols=69 Identities=39% Similarity=0.576 Sum_probs=65.2
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88410137556899997899999999999729999999179999999999999986431133321156666
Q 004641 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 510 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKkAYRkLAlk~HPDKn~~~p~A~e~Fk~I~~AYevLsDp~kR~~YD~~~~~ 510 (740)
.+||+||||++ +++.++||+|||+|++++|||+++.++.+.+.|++|++||++|+||.+|+.||.++..
T Consensus 17 ~~~Y~vLgv~~--~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~ 85 (109)
T 2ctw_A 17 ESLYHVLGLDK--NATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSL 85 (109)
T ss_dssp CCHHHHHTCCT--TCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHH
T ss_pred CCHHHHCCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
T ss_conf 79999919699--9999999999999999988397888679999999999999998597799999873651
No 9
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=1.00 E-value=1 Score=135.72 Aligned_cols=68 Identities=41% Similarity=0.687 Sum_probs=64.3
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8841013755689999789999999999972999999917999999999999998643113332115666
Q 004641 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKkAYRkLAlk~HPDKn~~~p~A~e~Fk~I~~AYevLsDp~kR~~YD~~~~ 509 (740)
.|||+||||++ +++.++||+|||+|++++|||+++.++.+.+.|++|++||++|+||.+|+.||.++.
T Consensus 3 ~~~y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (103)
T 1bq0_A 3 QDYYEILGVSK--TAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGH 70 (103)
T ss_dssp CCSTTTTSSCS--SCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTT
T ss_pred CCHHHHCCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99899929699--989999999999999998849788857999999999999999889889999998754
No 10
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=1.00 E-value=1 Score=134.51 Aligned_cols=68 Identities=32% Similarity=0.561 Sum_probs=63.0
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 884101375568999978999999999997299999991------7999999999999998643113332115666
Q 004641 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN------EKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKkAYRkLAlk~HPDKn~~~------p~A~e~Fk~I~~AYevLsDp~kR~~YD~~~~ 509 (740)
.|||+||||++ +++.++||+|||+|++++|||+++.+ +.+.+.|++|++||++|+||.+|+.||..+.
T Consensus 16 ~~~y~iLgv~~--~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 89 (94)
T 1wjz_A 16 KDWYSILGADP--SANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89 (94)
T ss_dssp SCHHHHTTCCT--TCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred CCHHHHCCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC
T ss_conf 98578709999--979999999999999988809897778714369999999999999999889999999998751
Done!