Query 004642
Match_columns 740
No_of_seqs 573 out of 5744
Neff 9.5
Searched_HMMs 29240
Date Tue Mar 26 18:53:46 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004642.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1938-1942//hhsearch_pdb/004642hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b9d_A Serine/threonine-protei 1.0 1 1 396.1 17.9 257 450-722 24-281 (350)
2 4gt4_A Tyrosine-protein kinase 1.0 1 1 393.4 20.7 257 450-722 26-304 (308)
3 4aoj_A High affinity nerve gro 1.0 1 1 392.5 23.1 257 450-723 41-318 (329)
4 3omv_A RAF proto-oncogene seri 1.0 1 1 390.2 21.1 264 449-728 35-304 (307)
5 4asz_A BDNF/NT-3 growth factor 1.0 1 1 390.2 18.7 257 450-723 13-288 (299)
6 4fih_A Serine/threonine-protei 1.0 1 1 390.0 20.6 260 449-727 73-333 (346)
7 4fie_A Serine/threonine-protei 1.0 1 1 389.7 21.9 258 449-725 150-408 (423)
8 4ase_A Vascular endothelial gr 1.0 1 1 385.1 18.7 265 443-722 57-345 (353)
9 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 381.4 16.2 256 450-723 32-296 (311)
10 4g3f_A NF-kappa-beta-inducing 1.0 1 1 381.1 18.7 250 449-722 57-314 (336)
No 1
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=396.06 Aligned_cols=257 Identities=22% Similarity=0.372 Sum_probs=213.8
Q ss_pred CCCCCCEEEECCCCEEEEEEEE-CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCEEEEEE
Q ss_conf 1565540561145158999991-799399999836876211598999999999972049996311643663067578999
Q 004642 450 EDFHIKYCIGTGGYGSVYKAEL-PEGKVVALKKLHHSETEDSAFVKSFQNEAHVLSTVRHRNIVKLYGFCLHKKCMFLIY 528 (740)
Q Consensus 450 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 528 (740)
++|++.+.||+|+||+||+|+. .+|+.||+|++....... ...+.+.+|++++++++|||||++++++.+++..|+||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~-~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVm 102 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSS-KEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVM 102 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCH-HHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCH-HHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEE
T ss_conf 25588479702779399999988999899999986587897-99999999999998779989891999999899999999
Q ss_pred EECCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCEECCCC
Q ss_conf 82458870011028885334798999989999999999988269988386279999667769995799422453002569
Q 004642 529 EYMERGSLFCVLHDDDEAIELNWTKRVNIVKSVAHALSYLHHDCTLSIIHRDISSNNILLDSNLEASVADFGTARLLHVD 608 (740)
Q Consensus 529 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~DfG~a~~~~~~ 608 (740)
||++||+|.+++.... ...+++.++..++.||+.||+|||++ ||+||||||+|||++.++.+||+|||+|+.....
T Consensus 103 Ey~~gg~L~~~i~~~~-~~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~ 178 (350)
T 4b9d_A 103 DYCEGGDLFKRINAQK-GVLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST 178 (350)
T ss_dssp ECCTTCBHHHHHHHTT-TCCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTTEESCCCHH
T ss_pred ECCCCCCHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCCCHHHEEECCCCCEEECCCCCCEEECCC
T ss_conf 4889983999999738-99997899999999999999999989---9151359789979878999897646521440688
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHH
Q ss_conf 87410133477734521124566687101676999999998399999964433358899831565520469996204458
Q 004642 609 SSYRTLRAGTYGYIAPELAYTIVVTGKCDVYSFGVVALEVLMGTHPGGLLSSLSSSSGPKIMLIDVLNQRLSPPVNQKIV 688 (740)
Q Consensus 609 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (740)
....+..+||+.|||||++.+..|+.++||||+||++|||++|+.||..... ......+...... +......
T Consensus 179 ~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~-------~~~~~~i~~~~~~-~~~~~~s 250 (350)
T 4b9d_A 179 VELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSM-------KNLVLKIISGSFP-PVSLHYS 250 (350)
T ss_dssp HHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH-------HHHHHHHHHTCCC-CCCTTSC
T ss_pred CCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH-------HHHHHHHHCCCCC-CCCCCCC
T ss_conf 5410145788360399998799989599999999999999978799899699-------9999999808999-9975579
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 8799999999972437999999999999999709
Q 004642 689 QDIILVSTIAFACLSSQPKSRPTMQRISQELLAG 722 (740)
Q Consensus 689 ~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~~ 722 (740)
+ .+.+++.+||+.||++|||++|+++|-+..
T Consensus 251 ~---~~~~li~~~L~~dP~~R~s~~e~l~hp~~~ 281 (350)
T 4b9d_A 251 Y---DLRSLVSQLFKRNPRDRPSVNSILEKGFIA 281 (350)
T ss_dssp H---HHHHHHHHHTCSSGGGSCCHHHHHTSHHHH
T ss_pred H---HHHHHHHHHCCCCHHHCCCHHHHHCCHHHH
T ss_conf 9---999999998558966790899996399761
No 2
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=393.38 Aligned_cols=257 Identities=23% Similarity=0.376 Sum_probs=211.9
Q ss_pred CCCCCCEEEECCCCEEEEEEEEC------CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCE
Q ss_conf 15655405611451589999917------993999998368762115989999999999720499963116436630675
Q 004642 450 EDFHIKYCIGTGGYGSVYKAELP------EGKVVALKKLHHSETEDSAFVKSFQNEAHVLSTVRHRNIVKLYGFCLHKKC 523 (740)
Q Consensus 450 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 523 (740)
+++.+.+.||+|+||+||+|.+. +++.||||+++..... ...++|.+|+.++.+++|||||+++|+|.+++.
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~--~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~ 103 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEG--PLREEFRHEAMLRARLQHPNVVCLLGVVTKDQP 103 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC---CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCH--HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCE
T ss_conf 888586691358884899999857765888869999998801496--899999999999985899898773649988998
Q ss_pred EEEEEEECCCCCCHHHHCCCC-------------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECC
Q ss_conf 789998245887001102888-------------5334798999989999999999988269988386279999667769
Q 004642 524 MFLIYEYMERGSLFCVLHDDD-------------EAIELNWTKRVNIVKSVAHALSYLHHDCTLSIIHRDISSNNILLDS 590 (740)
Q Consensus 524 ~~lv~e~~~~g~L~~~l~~~~-------------~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivH~dlkp~NIll~~ 590 (740)
.++||||+++|+|.+++.... ....++|.+++.|+.|||.||+|||++ +|+||||||+|||++.
T Consensus 104 ~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl~~ 180 (308)
T 4gt4_A 104 LSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVYD 180 (308)
T ss_dssp CEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECG
T ss_pred EEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCEEECC
T ss_conf 8999981899949999986276543333221111246899999999999999999999868---9977873623068879
Q ss_pred CCCEEEEECCCCEECCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCC
Q ss_conf 99579942245300256987--4101334777345211245666871016769999999983-99999964433358899
Q 004642 591 NLEASVADFGTARLLHVDSS--YRTLRAGTYGYIAPELAYTIVVTGKCDVYSFGVVALEVLM-GTHPGGLLSSLSSSSGP 667 (740)
Q Consensus 591 ~~~~kl~DfG~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ellt-g~~p~~~~~~~~~~~~~ 667 (740)
++.+||+|||+|+....... ......||++|||||++.+..|+.++|||||||++|||+| |+.||.....
T Consensus 181 ~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~------- 253 (308)
T 4gt4_A 181 KLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN------- 253 (308)
T ss_dssp GGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCH-------
T ss_pred CCCEEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCH-------
T ss_conf 9978988760202336777404734512577656989982799996300015799999999689999999899-------
Q ss_pred CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 8315655204699962044588799999999972437999999999999999709
Q 004642 668 KIMLIDVLNQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRPTMQRISQELLAG 722 (740)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~~ 722 (740)
..+...+.....++.+...++ .+.+++.+||+.||++||||+||+++|+..
T Consensus 254 -~~~~~~i~~~~~~~~p~~~~~---~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 254 -QDVVEMIRNRQVLPCPDDCPA---WVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp -HHHHHHHHTTCCCCCCTTCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred -HHHHHHHHCCCCCCCCCCCHH---HHHHHHHHHCCCCHHHCCCHHHHHHHHHHC
T ss_conf -999999981998999620369---999999997587965792999999999853
No 3
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=392.49 Aligned_cols=257 Identities=27% Similarity=0.452 Sum_probs=212.8
Q ss_pred CCCCCCEEEECCCCEEEEEEEEC------CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCE
Q ss_conf 15655405611451589999917------993999998368762115989999999999720499963116436630675
Q 004642 450 EDFHIKYCIGTGGYGSVYKAELP------EGKVVALKKLHHSETEDSAFVKSFQNEAHVLSTVRHRNIVKLYGFCLHKKC 523 (740)
Q Consensus 450 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 523 (740)
++|.+.++||+|+||+||+|+++ +++.||||+++... ....++|.+|++++.+++|||||+++|+|.+++.
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~---~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~ 117 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEAS---ESARQDFQREAELLTMLQHQHIVRFFGVCTEGRP 117 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCS---HHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred HHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCC---HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCE
T ss_conf 9928877971477848998998786657789699999977579---7999999999999985899899969899998998
Q ss_pred EEEEEEECCCCCCHHHHCCCCC------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCC
Q ss_conf 7899982458870011028885------------3347989999899999999999882699883862799996677699
Q 004642 524 MFLIYEYMERGSLFCVLHDDDE------------AIELNWTKRVNIVKSVAHALSYLHHDCTLSIIHRDISSNNILLDSN 591 (740)
Q Consensus 524 ~~lv~e~~~~g~L~~~l~~~~~------------~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivH~dlkp~NIll~~~ 591 (740)
.++||||+++|+|.++++.... ...++|.+++.|+.|||.||+|||+. +|+||||||+|||++.+
T Consensus 118 ~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~~~ 194 (329)
T 4aoj_A 118 LLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVGQG 194 (329)
T ss_dssp EEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETT
T ss_pred EEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC---CEECCCCCHHHEEECCC
T ss_conf 999998279993999998607541001221124578899999999999999999998408---84226666764898899
Q ss_pred CCEEEEECCCCEECCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCC
Q ss_conf 95799422453002569874--101334777345211245666871016769999999983-999999644333588998
Q 004642 592 LEASVADFGTARLLHVDSSY--RTLRAGTYGYIAPELAYTIVVTGKCDVYSFGVVALEVLM-GTHPGGLLSSLSSSSGPK 668 (740)
Q Consensus 592 ~~~kl~DfG~a~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ellt-g~~p~~~~~~~~~~~~~~ 668 (740)
+.+||+|||+|+........ .....||+.|||||++.+..|+.++|||||||++|||+| |+.||.....
T Consensus 195 ~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~-------- 266 (329)
T 4aoj_A 195 LVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSN-------- 266 (329)
T ss_dssp TEEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCH--------
T ss_pred CCEEECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCH--------
T ss_conf 968976660333656787530047645565665826544799996630010578999998289999999899--------
Q ss_pred CHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 3156552046999620445887999999999724379999999999999997099
Q 004642 669 IMLIDVLNQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRPTMQRISQELLAGK 723 (740)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~~~ 723 (740)
......+.....++.+...++ .+.+++.+||+.||++||||+||+++|+...
T Consensus 267 ~~~~~~i~~g~~~~~p~~~~~---~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~ 318 (329)
T 4aoj_A 267 TEAIDCITQGRELERPRACPP---EVYAIMRGCWQREPQQRHSIKDVHARLQALA 318 (329)
T ss_dssp HHHHHHHHHTCCCCCCTTCCH---HHHHHHHHHCCSSTTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCH---HHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 999999980898998644639---9999999974759657929999999999874
No 4
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=390.24 Aligned_cols=264 Identities=26% Similarity=0.434 Sum_probs=209.7
Q ss_pred HCCCCCCEEEECCCCEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCEEEEEE
Q ss_conf 21565540561145158999991799399999836876211598999999999972049996311643663067578999
Q 004642 449 TEDFHIKYCIGTGGYGSVYKAELPEGKVVALKKLHHSETEDSAFVKSFQNEAHVLSTVRHRNIVKLYGFCLHKKCMFLIY 528 (740)
Q Consensus 449 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 528 (740)
.+++.+.++||+|+||+||+|+++ ..||||+++..... ....+.|.+|++++++++|||||+++|++.+ +..++||
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~-~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVm 110 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPT-PEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVT 110 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCC-HHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEE
T ss_pred HHHEEEEEEEEECCCCEEEEEEEC--CCEEEEEEEECCCC-HHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEEEEE
T ss_conf 799498449820888689999989--96899999726899-9999999999999985899887469999978-9589999
Q ss_pred EECCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCEECCCC
Q ss_conf 82458870011028885334798999989999999999988269988386279999667769995799422453002569
Q 004642 529 EYMERGSLFCVLHDDDEAIELNWTKRVNIVKSVAHALSYLHHDCTLSIIHRDISSNNILLDSNLEASVADFGTARLLHVD 608 (740)
Q Consensus 529 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~DfG~a~~~~~~ 608 (740)
||+++|+|.++++.... .+++.++..|+.|||.||+|||++ +|+||||||+|||++.++.+||+|||+|+.....
T Consensus 111 Ey~~gGsL~~~l~~~~~--~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~ 185 (307)
T 3omv_A 111 QWCEGSSLYKHLHVQET--KFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRW 185 (307)
T ss_dssp ECCSSCBHHHHHHTSCC--CCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCSSCBC----
T ss_pred ECCCCCCHHHHHHHCCC--CCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf 74899878898752489--999999999999999999999779---9527855789978889990899441575424667
Q ss_pred CC--CCCCCCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCC-CCC
Q ss_conf 87--4101334777345211245---66687101676999999998399999964433358899831565520469-996
Q 004642 609 SS--YRTLRAGTYGYIAPELAYT---IVVTGKCDVYSFGVVALEVLMGTHPGGLLSSLSSSSGPKIMLIDVLNQRL-SPP 682 (740)
Q Consensus 609 ~~--~~~~~~gt~~y~aPE~~~~---~~~~~~~DvwslG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 682 (740)
.. .....+||+.|||||++.+ ..|+.++|||||||++|||+||+.||..... .......+.... .+.
T Consensus 186 ~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~-------~~~~~~~~~~~~~~p~ 258 (307)
T 3omv_A 186 SGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINN-------RDQIIFMVGRGYASPD 258 (307)
T ss_dssp --------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCC-------HHHHHHHHHTTCCCCC
T ss_pred CCCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH-------HHHHHHHHHCCCCCCC
T ss_conf 764031564468772498786146899878687757289999999978899899996-------9999999965888887
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCHH
Q ss_conf 2044588799999999972437999999999999999709998813
Q 004642 683 VNQKIVQDIILVSTIAFACLSSQPKSRPTMQRISQELLAGKTPMQK 728 (740)
Q Consensus 683 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~~~~~~~~ 728 (740)
...........+.+++.+||+.||++||||+|++++|+....+.++
T Consensus 259 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~lpk 304 (307)
T 3omv_A 259 LSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPK 304 (307)
T ss_dssp STTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTCCC
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCCCC
T ss_conf 2003544569999999997577976890989999999997450789
No 5
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=390.24 Aligned_cols=257 Identities=27% Similarity=0.459 Sum_probs=212.1
Q ss_pred CCCCCCEEEECCCCEEEEEEEEC------CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCE
Q ss_conf 15655405611451589999917------993999998368762115989999999999720499963116436630675
Q 004642 450 EDFHIKYCIGTGGYGSVYKAELP------EGKVVALKKLHHSETEDSAFVKSFQNEAHVLSTVRHRNIVKLYGFCLHKKC 523 (740)
Q Consensus 450 ~~~~~~~~lg~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 523 (740)
++|.+.+.||+|+||+||+|++. +++.||||+++... ....++|.+|++++++++|||||+++|+|.+++.
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~---~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~ 89 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS---DNARKDFHREAELLTNLQHEHIVKFYGVCVEGDP 89 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCC---HHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCC---HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCE
T ss_conf 8929824982078829999998776667788799999967778---5899999999999985899888628799956998
Q ss_pred EEEEEEECCCCCCHHHHCCCC----------CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCC
Q ss_conf 789998245887001102888----------5334798999989999999999988269988386279999667769995
Q 004642 524 MFLIYEYMERGSLFCVLHDDD----------EAIELNWTKRVNIVKSVAHALSYLHHDCTLSIIHRDISSNNILLDSNLE 593 (740)
Q Consensus 524 ~~lv~e~~~~g~L~~~l~~~~----------~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~ 593 (740)
.++||||+++|+|.++++..+ ....++|.+++.|+.||+.||+|||++ +|+||||||+|||++.++.
T Consensus 90 ~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~~~ 166 (299)
T 4asz_A 90 LIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLL 166 (299)
T ss_dssp EEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGC
T ss_pred EEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCC
T ss_conf 9999985899968999986086421112357778899999999999999999999759---9046765776389879986
Q ss_pred EEEEECCCCEECCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCH
Q ss_conf 799422453002569874--101334777345211245666871016769999999983-99999964433358899831
Q 004642 594 ASVADFGTARLLHVDSSY--RTLRAGTYGYIAPELAYTIVVTGKCDVYSFGVVALEVLM-GTHPGGLLSSLSSSSGPKIM 670 (740)
Q Consensus 594 ~kl~DfG~a~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ellt-g~~p~~~~~~~~~~~~~~~~ 670 (740)
+||+|||+|+........ .....||+.|||||++.+..|+.++|||||||++|||+| |+.||..... ..
T Consensus 167 ~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~-------~~- 238 (299)
T 4asz_A 167 VKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN-------NE- 238 (299)
T ss_dssp EEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH-------HH-
T ss_pred EEECCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCH-------HH-
T ss_conf 8988730010067887416647513470103889870799970366778899999998089999999899-------99-
Q ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC
Q ss_conf 56552046999620445887999999999724379999999999999997099
Q 004642 671 LIDVLNQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRPTMQRISQELLAGK 723 (740)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~~~ 723 (740)
+...+.....++.+...++ .+.+++.+||+.||++|||++++.+.|+...
T Consensus 239 ~~~~i~~~~~~~~p~~~~~---~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~ 288 (299)
T 4asz_A 239 VIECITQGRVLQRPRTCPQ---EVYELMLGCWQREPHMRKNIKGIHTLLQNLA 288 (299)
T ss_dssp HHHHHHHTCCCCCCTTCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCCCHH---HHHHHHHHHCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 9999980898899741439---9999999976879668929999999998777
No 6
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=390.04 Aligned_cols=260 Identities=24% Similarity=0.365 Sum_probs=214.5
Q ss_pred HCCCCCCEEEECCCCEEEEEEEE-CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCEEEEE
Q ss_conf 21565540561145158999991-79939999983687621159899999999997204999631164366306757899
Q 004642 449 TEDFHIKYCIGTGGYGSVYKAEL-PEGKVVALKKLHHSETEDSAFVKSFQNEAHVLSTVRHRNIVKLYGFCLHKKCMFLI 527 (740)
Q Consensus 449 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 527 (740)
.+.|++.++||+|+||.||+|.. .+|+.||+|++....... .+.+.+|+++++.++|||||++++++.+++..|+|
T Consensus 73 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~---~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iv 149 (346)
T 4fih_A 73 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQR---RELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVV 149 (346)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSS---GGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred HHHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHH---HHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEE
T ss_conf 575387079602728299999998999899999985276568---99999999999867998999199999989999999
Q ss_pred EEECCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCEECCC
Q ss_conf 98245887001102888533479899998999999999998826998838627999966776999579942245300256
Q 004642 528 YEYMERGSLFCVLHDDDEAIELNWTKRVNIVKSVAHALSYLHHDCTLSIIHRDISSNNILLDSNLEASVADFGTARLLHV 607 (740)
Q Consensus 528 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~DfG~a~~~~~ 607 (740)
|||++||+|.+++... .+++.++..++.||+.||+|||++ +|+||||||+|||++.++.+||+|||+|+....
T Consensus 150 mEy~~gg~L~~~l~~~----~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~ 222 (346)
T 4fih_A 150 MEFLEGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK 222 (346)
T ss_dssp ECCCTTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCS
T ss_pred EECCCCCCHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCEEEECCCCCEECCC
T ss_conf 9698998089998718----989999999999999999999988---835562788997887999889902757536678
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHH
Q ss_conf 98741013347773452112456668710167699999999839999996443335889983156552046999620445
Q 004642 608 DSSYRTLRAGTYGYIAPELAYTIVVTGKCDVYSFGVVALEVLMGTHPGGLLSSLSSSSGPKIMLIDVLNQRLSPPVNQKI 687 (740)
Q Consensus 608 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (740)
........+||+.|||||++.+..|+.++||||+||++|||++|+.||..... ......+.....+... ..
T Consensus 223 ~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~--------~~~~~~i~~~~~~~~~-~~ 293 (346)
T 4fih_A 223 EVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP--------LKAMKMIRDNLPPRLK-NL 293 (346)
T ss_dssp SSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--------HHHHHHHHHSSCCCCS-CG
T ss_pred CCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH--------HHHHHHHHCCCCCCCC-CC
T ss_conf 87753465627582799997799999689999999999999978799898599--------9999999717999887-50
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCH
Q ss_conf 8879999999997243799999999999999970999881
Q 004642 688 VQDIILVSTIAFACLSSQPKSRPTMQRISQELLAGKTPMQ 727 (740)
Q Consensus 688 ~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~~~~~~~ 727 (740)
......+.+++.+||..||++|||++|+++|.+..+...+
T Consensus 294 ~~~s~~~~dli~~~L~~dP~~R~ta~e~l~Hp~~~~~~~p 333 (346)
T 4fih_A 294 HKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAGPP 333 (346)
T ss_dssp GGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCCCG
T ss_pred CCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHHHCCCCCC
T ss_conf 2299999999999867995689099999609865689997
No 7
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=389.73 Aligned_cols=258 Identities=24% Similarity=0.371 Sum_probs=213.7
Q ss_pred HCCCCCCEEEECCCCEEEEEEEE-CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCEEEEE
Q ss_conf 21565540561145158999991-79939999983687621159899999999997204999631164366306757899
Q 004642 449 TEDFHIKYCIGTGGYGSVYKAEL-PEGKVVALKKLHHSETEDSAFVKSFQNEAHVLSTVRHRNIVKLYGFCLHKKCMFLI 527 (740)
Q Consensus 449 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 527 (740)
.+.|++.+.||+|+||.||+|.. .+|+.||+|++....... .+.+.+|+++|+.++|||||++++++.+++.+|+|
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~---~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iV 226 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQR---RELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVV 226 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSS---GGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred HHHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHH---HHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEE
T ss_conf 684386169624818489999999999899999986255468---99999999999857998987168999989999999
Q ss_pred EEECCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCEECCC
Q ss_conf 98245887001102888533479899998999999999998826998838627999966776999579942245300256
Q 004642 528 YEYMERGSLFCVLHDDDEAIELNWTKRVNIVKSVAHALSYLHHDCTLSIIHRDISSNNILLDSNLEASVADFGTARLLHV 607 (740)
Q Consensus 528 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~DfG~a~~~~~ 607 (740)
|||++||+|.+++... .+++.++..++.||+.||+|||++ ||+||||||+|||++.++.+||+|||+|+.+..
T Consensus 227 mEy~~gG~L~~~i~~~----~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~ 299 (423)
T 4fie_A 227 MEFLEGGALTDIVTHT----RMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK 299 (423)
T ss_dssp EECCTTEEHHHHHHHS----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCEECCS
T ss_pred EECCCCCCHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEECCCCCEEEECCCCCEECCC
T ss_conf 9698998289887616----989999999999999999999988---904465787778985899989803726547778
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHH
Q ss_conf 98741013347773452112456668710167699999999839999996443335889983156552046999620445
Q 004642 608 DSSYRTLRAGTYGYIAPELAYTIVVTGKCDVYSFGVVALEVLMGTHPGGLLSSLSSSSGPKIMLIDVLNQRLSPPVNQKI 687 (740)
Q Consensus 608 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (740)
........+||+.|||||++.+..|+.++||||+||++|||++|+.||..... ......+.....+... ..
T Consensus 300 ~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~--------~~~~~~i~~~~~~~~~-~~ 370 (423)
T 4fie_A 300 EVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP--------LKAMKMIRDNLPPRLK-NL 370 (423)
T ss_dssp SCCCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--------HHHHHHHHHSCCCCCS-CT
T ss_pred CCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH--------HHHHHHHHCCCCCCCC-CC
T ss_conf 87643466647472799997799999689999999999999978799898699--------9999999727998876-50
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 88799999999972437999999999999999709998
Q 004642 688 VQDIILVSTIAFACLSSQPKSRPTMQRISQELLAGKTP 725 (740)
Q Consensus 688 ~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~~~~~ 725 (740)
......+.+|+.+||..||++|||++|+++|-+..+..
T Consensus 371 ~~~s~~~~dli~~~L~~dP~~R~ta~ell~Hp~~~~~~ 408 (423)
T 4fie_A 371 HKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAG 408 (423)
T ss_dssp TSSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCC
T ss_pred CCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHHHCCCC
T ss_conf 12999999999998678956890999996098756899
No 8
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=385.10 Aligned_cols=265 Identities=24% Similarity=0.349 Sum_probs=214.8
Q ss_pred HHHHHHHCCCCCCEEEECCCCEEEEEEEECC------CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCC-CCCCEEE
Q ss_conf 9999972156554056114515899999179------93999998368762115989999999999720499-9631164
Q 004642 443 EDLINATEDFHIKYCIGTGGYGSVYKAELPE------GKVVALKKLHHSETEDSAFVKSFQNEAHVLSTVRH-RNIVKLY 515 (740)
Q Consensus 443 ~~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~------~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~~~ 515 (740)
.+++...++|++.+.||+|+||+||+|.+.. ++.||||++....... ..+.|.+|++++.+++| ||||+++
T Consensus 57 ~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~--~~~~~~~E~~il~~l~hhpnIV~l~ 134 (353)
T 4ase_A 57 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHS--EHRALMSELKILIHIGHHLNVVNLL 134 (353)
T ss_dssp HHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHH--HHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred CCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHH--HHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 55170579959820982178959999998688854477599999976235868--9999999999999757998487788
Q ss_pred EEEEEC-CEEEEEEEECCCCCCHHHHCCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCC
Q ss_conf 366306-757899982458870011028885-------------334798999989999999999988269988386279
Q 004642 516 GFCLHK-KCMFLIYEYMERGSLFCVLHDDDE-------------AIELNWTKRVNIVKSVAHALSYLHHDCTLSIIHRDI 581 (740)
Q Consensus 516 ~~~~~~-~~~~lv~e~~~~g~L~~~l~~~~~-------------~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivH~dl 581 (740)
|+|.+. +..++||||+++|+|.++++.... ...+++.++..++.|||.||+|||++ +|+||||
T Consensus 135 g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiHRDL 211 (353)
T 4ase_A 135 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDL 211 (353)
T ss_dssp EEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCC
T ss_pred EEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCC
T ss_conf 9999469779999983898979999974356665433341011035689999999999999998767627---8435746
Q ss_pred CCCCEEECCCCCEEEEECCCCEECCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCC
Q ss_conf 999667769995799422453002569874--101334777345211245666871016769999999983-99999964
Q 004642 582 SSNNILLDSNLEASVADFGTARLLHVDSSY--RTLRAGTYGYIAPELAYTIVVTGKCDVYSFGVVALEVLM-GTHPGGLL 658 (740)
Q Consensus 582 kp~NIll~~~~~~kl~DfG~a~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ellt-g~~p~~~~ 658 (740)
||+|||++.++.+||+|||+|+....+... .....||+.|||||++.+..|+.++|||||||++|||+| |+.||...
T Consensus 212 K~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~ 291 (353)
T 4ase_A 212 AARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV 291 (353)
T ss_dssp SGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred CCCCEEECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCC
T ss_conf 72113057999789796543222456887203254014666569899946999975537406899999981899999998
Q ss_pred CCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 4333588998315655204699962044588799999999972437999999999999999709
Q 004642 659 SSLSSSSGPKIMLIDVLNQRLSPPVNQKIVQDIILVSTIAFACLSSQPKSRPTMQRISQELLAG 722 (740)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~~ 722 (740)
. ....+...+.....+..+....+ .+.+++.+||+.||++||||+|++++|...
T Consensus 292 ~-------~~~~~~~~i~~g~~~~~p~~~~~---~~~~li~~c~~~dP~~RPt~~eil~~L~~l 345 (353)
T 4ase_A 292 K-------IDEEFCRRLKEGTRMRAPDYTTP---EMYQTMLDCWHGEPSQRPTFSELVEHLGNL 345 (353)
T ss_dssp C-------CSHHHHHHHHHTCCCCCCTTCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred C-------HHHHHHHHHHCCCCCCCCCCCCH---HHHHHHHHHCCCCHHHCCCHHHHHHHHHHH
T ss_conf 9-------89999999973898888865789---999999997686966793999999999999
No 9
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=381.44 Aligned_cols=256 Identities=23% Similarity=0.348 Sum_probs=211.7
Q ss_pred CCCCCCEEEECCCCEEEEEEEE-CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCEEEEEE
Q ss_conf 1565540561145158999991-799399999836876211598999999999972049996311643663067578999
Q 004642 450 EDFHIKYCIGTGGYGSVYKAEL-PEGKVVALKKLHHSETEDSAFVKSFQNEAHVLSTVRHRNIVKLYGFCLHKKCMFLIY 528 (740)
Q Consensus 450 ~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~ 528 (740)
++|++.+.||+|+||+||+|+. .+++.||+|++......+....+.+.+|++++++++|||||++++++.+++..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
T ss_conf 23689889831648499999999999899999988888779789999999999998679989891999997389899999
Q ss_pred EECCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEECCCCEECCCC
Q ss_conf 82458870011028885334798999989999999999988269988386279999667769995799422453002569
Q 004642 529 EYMERGSLFCVLHDDDEAIELNWTKRVNIVKSVAHALSYLHHDCTLSIIHRDISSNNILLDSNLEASVADFGTARLLHVD 608 (740)
Q Consensus 529 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~kl~DfG~a~~~~~~ 608 (740)
||++||+|.+++...+ .+++.++..++.||+.||+|||++ +|+||||||+|||++.++.+||+|||+|+.+...
T Consensus 112 Ey~~gG~L~~~i~~~~---~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~ 185 (311)
T 4aw0_A 112 SYAKNGELLKYIRKIG---SFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE 185 (311)
T ss_dssp CCCTTEEHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred ECCCCCCHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf 6489989999998749---999999999999999999999988---7826878789969858988899876875025778
Q ss_pred CC--CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHH
Q ss_conf 87--4101334777345211245666871016769999999983999999644333588998315655204699962044
Q 004642 609 SS--YRTLRAGTYGYIAPELAYTIVVTGKCDVYSFGVVALEVLMGTHPGGLLSSLSSSSGPKIMLIDVLNQRLSPPVNQK 686 (740)
Q Consensus 609 ~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (740)
.. .....+||+.|||||++.+..|+.++||||+||++|||++|+.||...+ .......+.......+ ..
T Consensus 186 ~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~-------~~~~~~~i~~~~~~~p--~~ 256 (311)
T 4aw0_A 186 SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGN-------EGLIFAKIIKLEYDFP--EK 256 (311)
T ss_dssp TTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSS-------HHHHHHHHHHTCCCCC--TT
T ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC-------HHHHHHHHHCCCCCCC--CC
T ss_conf 77654367556803079989768999968989989999999974989989979-------9999999971999999--65
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHH------HHHHHCCC
Q ss_conf 58879999999997243799999999999------99997099
Q 004642 687 IVQDIILVSTIAFACLSSQPKSRPTMQRI------SQELLAGK 723 (740)
Q Consensus 687 ~~~~~~~l~~li~~cl~~dP~~RPs~~ei------l~~L~~~~ 723 (740)
..+ .+.+++.+|++.||++|||++|+ ++|.+...
T Consensus 257 ~s~---~~~dli~~lL~~dp~~R~t~~e~~~~~~i~~Hp~F~~ 296 (311)
T 4aw0_A 257 FFP---KARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFES 296 (311)
T ss_dssp CCH---HHHHHHHHHSCSSGGGSTTSGGGTCHHHHHTSGGGTT
T ss_pred CCH---HHHHHHHHHCCCCHHHCCCHHHHCCCHHHHCCCCCCC
T ss_conf 699---9999999976289757809679758779877987589
No 10
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=381.12 Aligned_cols=250 Identities=22% Similarity=0.271 Sum_probs=205.7
Q ss_pred HCCCCCCEEEECCCCEEEEEEEE-CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCEEEEE
Q ss_conf 21565540561145158999991-79939999983687621159899999999997204999631164366306757899
Q 004642 449 TEDFHIKYCIGTGGYGSVYKAEL-PEGKVVALKKLHHSETEDSAFVKSFQNEAHVLSTVRHRNIVKLYGFCLHKKCMFLI 527 (740)
Q Consensus 449 ~~~~~~~~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 527 (740)
.+.|.+.++||+|+||.||+|+. .+|+.||||+++.... ..+|+++++.++|||||++++++.+++..|+|
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~--------~~~E~~il~~l~HpnIV~l~~~~~~~~~~~iv 128 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF--------RVEELVACAGLSSPRIVPLYGAVREGPWVNIF 128 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC--------CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred HHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH--------HHHHHHHHHHCCCCCCCCEEEEEEECCEEEEE
T ss_conf 3351768685138780999999889998999999788886--------99999999857998999399999989999999
Q ss_pred EEECCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCC-CEEEEECCCCEECC
Q ss_conf 98245887001102888533479899998999999999998826998838627999966776999-57994224530025
Q 004642 528 YEYMERGSLFCVLHDDDEAIELNWTKRVNIVKSVAHALSYLHHDCTLSIIHRDISSNNILLDSNL-EASVADFGTARLLH 606 (740)
Q Consensus 528 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivH~dlkp~NIll~~~~-~~kl~DfG~a~~~~ 606 (740)
|||++||+|.+++...+ .+++.++..++.||+.||+|||++ +|+||||||+|||++.++ .+||+|||+|+...
T Consensus 129 mEy~~gg~L~~~l~~~~---~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~ 202 (336)
T 4g3f_A 129 MELLEGGSLGQLIKQMG---CLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCLQ 202 (336)
T ss_dssp ECCCTTCBHHHHHHHHS---SCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTTCEEC-
T ss_pred EECCCCCCHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHC---CCEECCCCHHHEEEECCCCEEEEEECCCCEECC
T ss_conf 96659986999998769---999999999999999999999988---904261677887995899979996278776856
Q ss_pred CCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 69874-----1013347773452112456668710167699999999839999996443335889983156552046999
Q 004642 607 VDSSY-----RTLRAGTYGYIAPELAYTIVVTGKCDVYSFGVVALEVLMGTHPGGLLSSLSSSSGPKIMLIDVLNQRLSP 681 (740)
Q Consensus 607 ~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (740)
.+... ....+||+.|||||++.+..|+.++||||+||++|||++|+.||.... .......+.......
T Consensus 203 ~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~-------~~~~~~~i~~~~~~~ 275 (336)
T 4g3f_A 203 PDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYF-------RGPLCLKIASEPPPI 275 (336)
T ss_dssp -----------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTC-------CSCCHHHHHHSCCGG
T ss_pred CCCCCCCEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC-------HHHHHHHHHCCCCCC
T ss_conf 7876540221785455802008999889998908999999999999997869989989-------999999998089980
Q ss_pred -CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf -62044588799999999972437999999999999999709
Q 004642 682 -PVNQKIVQDIILVSTIAFACLSSQPKSRPTMQRISQELLAG 722 (740)
Q Consensus 682 -~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~L~~~ 722 (740)
.... .....+.+++.+||+.||++|||+.|+++++...
T Consensus 276 ~~~~~---~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~ 314 (336)
T 4g3f_A 276 REIPP---SCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKA 314 (336)
T ss_dssp GGSCT---TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHCCC---CCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHH
T ss_conf 02586---6799999999997628976895999999999999
Done!