BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004644
         (740 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score = 1104 bits (2855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/734 (69%), Positives = 614/734 (83%), Gaps = 1/734 (0%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
           MK+SLKS+G  GSYVF  N KITQLGKSG+++EAIK+F  M+ KNTVT+NSMISA+AKNG
Sbjct: 1   MKSSLKSVGEHGSYVFRHNLKITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNG 60

Query: 61  RVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTR 120
           R++DAR+LF+ MPQRN+VSWNSMIA YLHND+V+EAR+LFDKM   DL+SW LMITCYTR
Sbjct: 61  RISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDLYSWTLMITCYTR 120

Query: 121 KGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG 180
            GEL KAR LF+LLP K +  C NAMVAGYAK   ++EA++L DAMP+K++VSWNSML+G
Sbjct: 121 NGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTG 180

Query: 181 YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
           YT+NGEM L  +FFE M ERDVVSWNLM+DG+VE+ DL+S+W+FF+KIP  N VSWVTML
Sbjct: 181 YTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTML 240

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTT 300
            G+AR G++ EARRLFDQMPIRNVVAWNAMIAAYVQ   ++EA  LF+EMPE+N +SWTT
Sbjct: 241 CGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTT 300

Query: 301 MIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW 360
           +I+GYVR+ KLDEAR+LL+QMPY+N+AAQTAMISGYVQNKRMD+A QIF++I   DVVCW
Sbjct: 301 VINGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCW 360

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
           N MI GY+QCGRMDEA++LF+QMV KDIV+WNTM+A YAQ+ QMD A+KIFEEM K +N 
Sbjct: 361 NTMIAGYSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEM-KEKNI 419

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
           VSWN+LISG  QN  +LDALK F+LM  EG+K D ST AC LS+CAHLAALQ+G+Q+H L
Sbjct: 420 VSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQL 479

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEA 540
            +KSGY  DLFV N+LITMYAKCG I +AELLFKD D  DV+SWNSLIA YA+NGN  EA
Sbjct: 480 VMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREA 539

Query: 541 IKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMID 600
           +KLF +M +EGVAPD VTF+G+LSACSHVGL+D GLKLF+CM + Y IEPL EHYACM+D
Sbjct: 540 LKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVD 599

Query: 601 LLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSC 660
           LL RAGRL+EAF++V+GMKI  NAGIWG LLGACR+H N++L + A EKL E EP KTS 
Sbjct: 600 LLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSN 659

Query: 661 YALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           Y LLSNM AEAGRWDEV +VR  M+  GA+KQPG SWIE++N++H FLS DP   R  E+
Sbjct: 660 YVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQNRVHAFLSEDPAHPRAVEL 719

Query: 721 CNTLKTLAAQIRNT 734
           C+ L++L A +RNT
Sbjct: 720 CHILRSLTAHMRNT 733


>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 748

 Score = 1016 bits (2628), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/733 (64%), Positives = 591/733 (80%), Gaps = 1/733 (0%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
           +K  ++SIG  G + FN N++I QLGK G+VEEAI+IF  M+ KN VTYNSMIS  AKN 
Sbjct: 3   LKLGIRSIGEAGKHAFNHNRQIIQLGKLGKVEEAIRIFFNMTHKNLVTYNSMISVLAKNA 62

Query: 61  RVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTR 120
           R+ DAR+LF+QM  RNLVSWN+MIAGYLHN+ V+EA ELFD M   D FSWALMITCYTR
Sbjct: 63  RIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVMPERDNFSWALMITCYTR 122

Query: 121 KGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG 180
           KG+LEKAREL +L+P+K DTACWNAM+AGYAK G +N+AKK+ + MP+K++VS+NSML+G
Sbjct: 123 KGKLEKARELLELVPDKLDTACWNAMIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAG 182

Query: 181 YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
           YT+NG+MHLA +FFE+M ER+VVSWNLM+ GYV+  DL SAW+ F+KIP  N VSWVTML
Sbjct: 183 YTQNGKMHLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPNPNAVSWVTML 242

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTT 300
            G A+ G+M EAR LFD+MP +NVV+WNAMIA YVQ  Q++EA +LF +MP ++ VSWTT
Sbjct: 243 CGLAKYGKMAEARELFDRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKKMPHKDSVSWTT 302

Query: 301 MIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW 360
           +I+GY+R+ KLDEAR++ +QMP K+I AQTA++SG +QN R+DEA+Q+F +IG HDVVCW
Sbjct: 303 IINGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLIQNGRIDEADQMFSRIGAHDVVCW 362

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
           N MI GY++ GRMDEA+NLFRQM  K+ V+WNTMI+GYAQ  QMD A +IF+ M + +N 
Sbjct: 363 NSMIAGYSRSGRMDEALNLFRQMPIKNSVSWNTMISGYAQAGQMDRATEIFQAM-REKNI 421

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
           VSWN+LI+GFLQN  +LDALK  V+M +EGKK D ST AC LSACA+LAALQ+G Q+H  
Sbjct: 422 VSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACTLSACANLAALQVGNQLHEY 481

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEA 540
            +KSGY+NDLFVGN+LI MYAKCGR+Q+AE +F+D + VD+ISWNSLI+GYA+NG A +A
Sbjct: 482 ILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIECVDLISWNSLISGYALNGYANKA 541

Query: 541 IKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMID 600
            K FE+M  E V PD VTFIG+LSACSH GL + GL +F+CM E +AIEPL EHY+C++D
Sbjct: 542 FKAFEQMSSERVVPDEVTFIGMLSACSHAGLANQGLDIFKCMIEDFAIEPLAEHYSCLVD 601

Query: 601 LLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSC 660
           LL R GRL+EAF  V+GMK+K NAG+WG+LLGACR+H+N++LGR A E+L ELEP   S 
Sbjct: 602 LLGRVGRLEEAFNTVRGMKVKANAGLWGSLLGACRVHKNLELGRFAAERLFELEPHNASN 661

Query: 661 YALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           Y  LSNMHAEAGRW+EVE+VR+ M G  A KQPGCSWIEV+NQI  FLS DP + R   I
Sbjct: 662 YITLSNMHAEAGRWEEVERVRMLMRGKRAGKQPGCSWIEVQNQIQHFLSHDPAKLRPKNI 721

Query: 721 CNTLKTLAAQIRN 733
              L TLAA +R+
Sbjct: 722 QIILNTLAAHMRD 734


>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  991 bits (2563), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/734 (63%), Positives = 585/734 (79%), Gaps = 6/734 (0%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
           MK ++KSIG KGSYVF QN +I+QLG+SGR+EEA+ +F QM+++N VTYNSMISAYAKNG
Sbjct: 1   MKFNVKSIGEKGSYVFTQNLRISQLGRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNG 60

Query: 61  RVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTR 120
           R+ +AR+LF+ MPQRNLVSWNSMIAGYLHN+ V++A  LFD+MF+ D++SW LMITCYTR
Sbjct: 61  RIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTR 120

Query: 121 KGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG 180
            GELEKARELF+LLP+K+DT C NA++AGYAK   + EAKKL D M  KN+VSWNS+LSG
Sbjct: 121 IGELEKARELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSG 180

Query: 181 YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
           YTKNG+M L  +FFEAM ER+VVSWNLM+DGYV + DLDSAW FF+KIP  NVVSWVTML
Sbjct: 181 YTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTML 240

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTT 300
           SG+A  GRM EAR LF++MP +N+V+WNAMI AYV+  QI++A +LF+EMPE++ VSWT 
Sbjct: 241 SGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTA 300

Query: 301 MIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW 360
           MI+GYVR+ KL +AR +L+ MPYKNIAAQTAMI+GY+Q+ RMDEAN+IF +I   D VCW
Sbjct: 301 MINGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCW 360

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
           N MI GYA CGR DEA+ LF++MV KD+V+WNTMIA YAQ  QMD A+++F EM + RN 
Sbjct: 361 NSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEM-QERNV 419

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
           VSWN+LI+G++QN  + +AL  F+LM Q+G+K D +T+ C L A A+LAAL +G Q+HHL
Sbjct: 420 VSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHL 479

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEA 540
            IK+G+ NDLFV N+++TMYAK GR+  AE +F +    DV+SWNSLIAGYA+NG   EA
Sbjct: 480 TIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKNKDVVSWNSLIAGYALNGCGKEA 539

Query: 541 IKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMID 600
           ++LFE M + G+ PD VTF G+LSAC+H G VD GL LF+ MTE Y+I+P  EHYAC+I+
Sbjct: 540 VELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVIN 599

Query: 601 LLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSC 660
           LL R GRL+EA E+V+GMK   +A IWG LL ACR+H N++L + + E+L  LEPQ  S 
Sbjct: 600 LLGRVGRLEEAVEIVQGMKTVSSAKIWGALLWACRIHHNLELAKYSAERLLALEPQNASN 659

Query: 661 YALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           Y LLSNMHAEAGRWD VE+VRV M+ + A+KQPGCSWIE+ NQ+H FLS  P   R  EI
Sbjct: 660 YVLLSNMHAEAGRWDMVERVRVLMKENKAEKQPGCSWIEIDNQLHCFLSKAPPDLR-PEI 718

Query: 721 CNTLKTLAAQIRNT 734
           CN LKT    +RNT
Sbjct: 719 CNILKT----VRNT 728


>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  990 bits (2560), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/734 (63%), Positives = 585/734 (79%), Gaps = 6/734 (0%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
           MK ++KSIG KGSYVF QN +I+QLG+SGR+EEA+ +F +M+++N VTYNSMISAYAKNG
Sbjct: 1   MKFNVKSIGEKGSYVFTQNLRISQLGRSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNG 60

Query: 61  RVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTR 120
           R+ +AR+LF+ MPQRNLVSWNSMIAGYLHN+ V++A  LFD+MF+ D++SW LMITCYTR
Sbjct: 61  RIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTR 120

Query: 121 KGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG 180
            GELEKARELF+LLP+K+DT C NA++AGYAK   + EAKKL D M  KN+VSWNS+LSG
Sbjct: 121 IGELEKARELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSG 180

Query: 181 YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
           YTKNG+M L  +FFEAM ER+VVSWNLM+DGYV + DLDSAW FF+KIP  NVVSWVTML
Sbjct: 181 YTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTML 240

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTT 300
           SG+A  GRM EAR LF++MP +N+V+WNAMI AYV+  QI++A +LF+EMPE++ VSWT 
Sbjct: 241 SGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTA 300

Query: 301 MIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW 360
           MI+GYVR+ KL +AR +L+ MPYKNIAAQTAMI+GY+Q+ RMDEAN+IF +I   D VCW
Sbjct: 301 MINGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCW 360

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
           N MI GYA CGR DEA+ LF++MV KD+V+WNTMIA YAQ  QMD A+++F EM + RN 
Sbjct: 361 NSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEM-QERNV 419

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
           VSWN+LI+G++QN  + +AL  F+LM Q+G+K D +T+ C L A A+LAAL +G Q+HHL
Sbjct: 420 VSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHL 479

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEA 540
            IK+G+ NDLFV N+++TMYAK GR+  AE +F +    DV+SWNSLIAGYA+NG   EA
Sbjct: 480 TIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKXKDVVSWNSLIAGYALNGCGKEA 539

Query: 541 IKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMID 600
           ++LFE M + G+ PD VTF G+LSAC+H G VD GL LF+ MTE Y+I+P  EHYAC+I+
Sbjct: 540 VELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVIN 599

Query: 601 LLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSC 660
           LL R GRL+EA E+V+GMK   +A IWG LL ACR+H N++L + + E+L  LEPQ  S 
Sbjct: 600 LLGRVGRLEEAVEIVQGMKTVSSAKIWGALLWACRIHHNLELAKYSAERLLALEPQNASN 659

Query: 661 YALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           Y LLSNMHAEAGRWD VE+VRV M+ + A+KQPGCSWIE+ NQ+H FLS  P   R  EI
Sbjct: 660 YVLLSNMHAEAGRWDMVERVRVLMKENKAEKQPGCSWIEIDNQLHCFLSKAPPDLR-PEI 718

Query: 721 CNTLKTLAAQIRNT 734
           CN LKT    +RNT
Sbjct: 719 CNILKT----VRNT 728


>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 907

 Score =  984 bits (2545), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/719 (63%), Positives = 581/719 (80%), Gaps = 1/719 (0%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VFNQNKKI  LGK G+++EA ++FS +  KN  TYNSM++ +AKNGRV+DAR+LF++M Q
Sbjct: 17  VFNQNKKIIYLGKQGKIDEAKRVFSNVIHKNHATYNSMVTVFAKNGRVSDARQLFDKMSQ 76

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RNLVSWN+MIAGYLHN+ V+EA +LFD M   D FSWALMITCYTRKG LEKARELF+L+
Sbjct: 77  RNLVSWNTMIAGYLHNNMVEEAHKLFDLMAERDNFSWALMITCYTRKGMLEKARELFELV 136

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P+K DTACWNAM+AGYAK G +++A+K+ + MP K++VS+NSML+GYT+NG+M LA KFF
Sbjct: 137 PDKLDTACWNAMIAGYAKKGRFDDAEKVFEKMPVKDLVSYNSMLAGYTQNGKMGLAMKFF 196

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
           E M ER+VVSWNLM+ G+V   DL SAW+ F+KIP+ N VSWVTML G+AR+G+++EAR+
Sbjct: 197 ERMAERNVVSWNLMVAGFVNNCDLGSAWELFEKIPDPNAVSWVTMLCGFARHGKIVEARK 256

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
           LFD+MP +NVV+WNAMIAAYVQ  QI+EA +LF E P ++ VSWTTMI+GYVR+ KLDEA
Sbjct: 257 LFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLFKETPYKDCVSWTTMINGYVRVGKLDEA 316

Query: 315 RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMD 374
           R + +QMPYK++AA+TA++SG +QN R+DEA+Q+F ++   D +CWN MI GY Q GRM 
Sbjct: 317 REVYNQMPYKDVAAKTALMSGLIQNGRIDEASQVFSQLNKRDAICWNSMIAGYCQSGRMS 376

Query: 375 EAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
           EA+NLFRQM  K+ V+WNTMI+GYAQ  +MD A +IFE MG  RN +SWN+LI+GFLQN 
Sbjct: 377 EALNLFRQMPVKNAVSWNTMISGYAQAGEMDRATEIFEAMGV-RNVISWNSLITGFLQNG 435

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN 494
            +LDALK  VLM QEGKK D ST AC+LS+CA+LAALQ+G+Q+H L +KSGY+NDLFV N
Sbjct: 436 LYLDALKSLVLMGQEGKKPDQSTFACSLSSCANLAALQVGKQLHELILKSGYINDLFVSN 495

Query: 495 SLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP 554
           +LI MYAKCG +Q+AE +FKD + VD+ISWNSLI+GYA+NG A EA   FE+M  EG  P
Sbjct: 496 ALIAMYAKCGGVQSAEKVFKDIEGVDLISWNSLISGYALNGYANEAFWAFEQMSSEGTVP 555

Query: 555 DPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEM 614
           D VTFIG+LSACSH GL + G+ LF+CM E +AIEPL EHY+C++DLL R GRL+EAF +
Sbjct: 556 DEVTFIGMLSACSHAGLTNQGVDLFKCMIEGFAIEPLAEHYSCLVDLLGRMGRLEEAFNI 615

Query: 615 VKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRW 674
           V+GMK+K NAG+WG+LL ACR+H+N++LG+IA  +L ELEP   S Y  LSNMHAEAGRW
Sbjct: 616 VRGMKVKANAGLWGSLLAACRVHKNMELGKIAALRLLELEPHNASNYITLSNMHAEAGRW 675

Query: 675 DEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           ++VE++RV M    A K PGCSWIEV+NQI  F+S DP + RT  I   L TL+A +R+
Sbjct: 676 EDVERLRVLMRERRAGKLPGCSWIEVQNQIQNFVSDDPGKLRTESIKIILNTLSAHMRD 734



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 142/527 (26%), Positives = 275/527 (52%), Gaps = 29/527 (5%)

Query: 168 SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK 227
           SKN+ + N  +    K G++  A + F  +  ++  ++N M+  + +   +  A + F K
Sbjct: 14  SKNVFNQNKKIIYLGKQGKIDEAKRVFSNVIHKNHATYNSMVTVFAKNGRVSDARQLFDK 73

Query: 228 IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF 287
           + ++N+VSW TM++GY  N  + EA +LFD M  R+  +W  MI  Y ++G +E+A  LF
Sbjct: 74  MSQRNLVSWNTMIAGYLHNNMVEEAHKLFDLMAERDNFSWALMITCYTRKGMLEKARELF 133

Query: 288 IEMPER-NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEAN 346
             +P++ +   W  MI GY +  + D+A ++ ++MP K++ +  +M++GY QN +M  A 
Sbjct: 134 ELVPDKLDTACWNAMIAGYAKKGRFDDAEKVFEKMPVKDLVSYNSMLAGYTQNGKMGLAM 193

Query: 347 QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDD 406
           + F+++   +VV WN+M+ G+     +  A  LF ++ + + V+W TM+ G+A+  ++ +
Sbjct: 194 KFFERMAERNVVSWNLMVAGFVNNCDLGSAWELFEKIPDPNAVSWVTMLCGFARHGKIVE 253

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
           A K+F+ M   +N VSWNA+I+ ++Q+    +A+K+F    +E    D  +    ++   
Sbjct: 254 ARKLFDRM-PCKNVVSWNAMIAAYVQDLQIDEAVKLF----KETPYKDCVSWTTMINGYV 308

Query: 467 HLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNS 526
            +  L   R++++   +  Y  D+    +L++   + GRI  A  +F   +  D I WNS
Sbjct: 309 RVGKLDEAREVYN---QMPY-KDVAAKTALMSGLIQNGRIDEASQVFSQLNKRDAICWNS 364

Query: 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVY 586
           +IAGY  +G  +EA+ LF +M ++    + V++  ++S  +  G +D   ++FE M    
Sbjct: 365 MIAGYCQSGRMSEALNLFRQMPVK----NAVSWNTMISGYAQAGEMDRATEIFEAM---- 416

Query: 587 AIEPLVEHYACMIDLLSRAGRLD--EAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
            +  ++   + +   L     LD  ++  ++     KP+   +   L +C     +++G+
Sbjct: 417 GVRNVISWNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTFACSLSSCANLAALQVGK 476

Query: 645 IAVEKLSELEPQKTSCYAL-----LSNMHAEAGRWDEVEKVRVSMEG 686
               +L EL  +      L     L  M+A+ G     EKV   +EG
Sbjct: 477 ----QLHELILKSGYINDLFVSNALIAMYAKCGGVQSAEKVFKDIEG 519


>gi|224137432|ref|XP_002322556.1| predicted protein [Populus trichocarpa]
 gi|222867186|gb|EEF04317.1| predicted protein [Populus trichocarpa]
          Length = 702

 Score =  983 bits (2540), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/695 (66%), Positives = 564/695 (81%), Gaps = 4/695 (0%)

Query: 41  MSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF 100
           M++KNTVTYNSMIS YAKNGR+N AR LF++MP+RNLVSWN+M++GYLHN K  EA +LF
Sbjct: 1   MAEKNTVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLF 60

Query: 101 DKMFRPDLFSWALMITCYTRKGELEKARELFDLLP--NKEDTACWNAMVAGYAKIGNYNE 158
             M R DLFSW LMITCYTR GE+EKARELFD LP   ++  ACWNAM++GY K G  NE
Sbjct: 61  VIMPRRDLFSWTLMITCYTRNGEVEKARELFDSLPCSYRKGVACWNAMISGYVKKGRVNE 120

Query: 159 AKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDL 218
           AK+L D MP KN++SWNSML+GYT+N +M L  +FF  M+ERDVVSWNLM+DG++++ DL
Sbjct: 121 AKRLFDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEMDERDVVSWNLMVDGFIQVGDL 180

Query: 219 DSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
           DSAWKFFQ+  + NVVSWVTMLSG+ARNG +LE+RRLFDQMP RN+V+WNAMI+AYVQR 
Sbjct: 181 DSAWKFFQETQKPNVVSWVTMLSGFARNGNILESRRLFDQMPSRNIVSWNAMISAYVQRC 240

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
           +I+EA+RLF EMPER+ VSWTTMI+GYVRI KLDEAR LL++MPY+NI AQTAMISGY+Q
Sbjct: 241 EIDEASRLFEEMPERDSVSWTTMINGYVRIGKLDEARELLNEMPYRNIGAQTAMISGYIQ 300

Query: 339 NKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGY 398
             ++DEA + FD+IGT DVVCWN MI GYA  GR++EA+ L ++MVNKD+VTWNTMI+ Y
Sbjct: 301 CNKVDEARRFFDEIGTWDVVCWNAMIAGYAHHGRINEALCLSKRMVNKDMVTWNTMISCY 360

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           AQ+ QMD AVKIFEEMG+ R+ VSWN+LI+GF+ N  +LDALK F LM  EGKK D  + 
Sbjct: 361 AQVGQMDRAVKIFEEMGE-RDLVSWNSLIAGFMLNGQNLDALKSFALMGHEGKKPDQLSF 419

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
           AC LS+CA +AALQ+G Q+H + +K GY+N L V N+LITMYAKCGRI  A L+F     
Sbjct: 420 ACGLSSCATIAALQVGNQLHQVVVKGGYLNYLVVNNALITMYAKCGRILEAGLVFNGICH 479

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
            DVISWNSLI GYAING   EA+KLFEEM  EG+APD VTFIG+LSAC+H G+VD GLKL
Sbjct: 480 ADVISWNSLIGGYAINGYGKEALKLFEEMASEGMAPDEVTFIGILSACNHAGMVDHGLKL 539

Query: 579 FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQ 638
           F+CM++VYAIEPL EHYACM+DLL R GRLDEAFE+V+GMK+K  AG+WG LLGACR H 
Sbjct: 540 FKCMSKVYAIEPLAEHYACMVDLLGRVGRLDEAFEIVRGMKVKATAGVWGALLGACRAHG 599

Query: 639 NIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWI 698
           N++LGR+A  KLSE EP KTS Y LLSN+HAEA RW+EV++VR+ M  S   K+PGCSW+
Sbjct: 600 NLELGRLAAHKLSEFEPHKTSNYVLLSNIHAEANRWNEVQEVRMLMNASSTVKEPGCSWV 659

Query: 699 EVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           EV+NQ+H FLS D  + R  +I  TL +L + IRN
Sbjct: 660 EVRNQVHGFLSDDSTRSR-PDIGVTLASLNSHIRN 693



 Score =  298 bits (762), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 164/479 (34%), Positives = 271/479 (56%), Gaps = 46/479 (9%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMS---QKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           +F+    IT   ++G VE+A ++F  +    +K    +N+MIS Y K GRVN+A++LF++
Sbjct: 68  LFSWTLMITCYTRNGEVEKARELFDSLPCSYRKGVACWNAMISGYVKKGRVNEAKRLFDE 127

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           MP +NL+SWNSM+AGY  N K++   E F++M   D+ SW LM+  + + G+L+ A + F
Sbjct: 128 MPVKNLISWNSMLAGYTQNRKMRLGLEFFNEMDERDVVSWNLMVDGFIQVGDLDSAWKFF 187

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
                K +   W  M++G+A+ GN  E+++L D MPS+NIVSWN+M+S Y +  E+  AS
Sbjct: 188 Q-ETQKPNVVSWVTMLSGFARNGNILESRRLFDQMPSRNIVSWNAMISAYVQRCEIDEAS 246

Query: 192 KFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLE 251
           + FE M ERD VSW  M++GYV +  LD A +   ++P +N+ +   M+SGY +  ++ E
Sbjct: 247 RLFEEMPERDSVSWTTMINGYVRIGKLDEARELLNEMPYRNIGAQTAMISGYIQCNKVDE 306

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKL 311
           ARR FD++   +VV WNAMIA Y   G+I EA  L   M  ++ V+W TMI  Y ++ ++
Sbjct: 307 ARRFFDEIGTWDVVCWNAMIAGYAHHGRINEALCLSKRMVNKDMVTWNTMISCYAQVGQM 366

Query: 312 DEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG------------------ 353
           D A ++ ++M  +++ +  ++I+G++ N +  +A + F  +G                  
Sbjct: 367 DRAVKIFEEMGERDLVSWNSLIAGFMLNGQNLDALKSFALMGHEGKKPDQLSFACGLSSC 426

Query: 354 -----------THDVVCW----------NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWN 392
                       H VV            N +I  YA+CGR+ EA  +F  + + D+++WN
Sbjct: 427 ATIAALQVGNQLHQVVVKGGYLNYLVVNNALITMYAKCGRILEAGLVFNGICHADVISWN 486

Query: 393 TMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
           ++I GYA      +A+K+FEEM   G   + V++  ++S           LK+F  M++
Sbjct: 487 SLIGGYAINGYGKEALKLFEEMASEGMAPDEVTFIGILSACNHAGMVDHGLKLFKCMSK 545



 Score =  199 bits (506), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 116/419 (27%), Positives = 228/419 (54%), Gaps = 24/419 (5%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL 88
           G ++ A K F +  + N V++ +M+S +A+NG + ++R+LF+QMP RN+VSWN+MI+ Y+
Sbjct: 178 GDLDSAWKFFQETQKPNVVSWVTMLSGFARNGNILESRRLFDQMPSRNIVSWNAMISAYV 237

Query: 89  HNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVA 148
              ++ EA  LF++M   D  SW  MI  Y R G+L++AREL + +P + +     AM++
Sbjct: 238 QRCEIDEASRLFEEMPERDSVSWTTMINGYVRIGKLDEARELLNEMPYR-NIGAQTAMIS 296

Query: 149 GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLM 208
           GY +    +EA++  D + + ++V WN+M++GY  +G ++ A    + M  +D+V+WN M
Sbjct: 297 GYIQCNKVDEARRFFDEIGTWDVVCWNAMIAGYAHHGRINEALCLSKRMVNKDMVTWNTM 356

Query: 209 LDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF----------DQ 258
           +  Y ++  +D A K F+++ E+++VSW ++++G+  NG+ L+A + F          DQ
Sbjct: 357 ISCYAQVGQMDRAVKIFEEMGERDLVSWNSLIAGFMLNGQNLDALKSFALMGHEGKKPDQ 416

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP-VSWTTMIDGYVRIAKLDEARRL 317
           +     ++  A IAA     Q+ +   + ++    N  V    +I  Y +  ++ EA  +
Sbjct: 417 LSFACGLSSCATIAALQVGNQLHQ---VVVKGGYLNYLVVNNALITMYAKCGRILEAGLV 473

Query: 318 LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRM 373
            + + + ++ +  ++I GY  N    EA ++F+++ +     D V +  ++      G +
Sbjct: 474 FNGICHADVISWNSLIGGYAINGYGKEALKLFEEMASEGMAPDEVTFIGILSACNHAGMV 533

Query: 374 DEAINLFRQMVNKDIVT-----WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
           D  + LF+ M     +      +  M+    ++ ++D+A +I   M  +     W AL+
Sbjct: 534 DHGLKLFKCMSKVYAIEPLAEHYACMVDLLGRVGRLDEAFEIVRGMKVKATAGVWGALL 592



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 13/174 (7%)

Query: 9   GNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKL 68
           G   +Y+   N  IT   K GR+ EA  +F+ +   + +++NS+I  YA NG   +A KL
Sbjct: 445 GGYLNYLVVNNALITMYAKCGRILEAGLVFNGICHADVISWNSLIGGYAINGYGKEALKL 504

Query: 69  FEQMPQRNL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYT 119
           FE+M    +    V++  +++   H   V    +LF  M       P    +A M+    
Sbjct: 505 FEEMASEGMAPDEVTFIGILSACNHAGMVDHGLKLFKCMSKVYAIEPLAEHYACMVDLLG 564

Query: 120 RKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYN----EAKKLLDAMPSK 169
           R G L++A E+   +  K     W A++      GN       A KL +  P K
Sbjct: 565 RVGRLDEAFEIVRGMKVKATAGVWGALLGACRAHGNLELGRLAAHKLSEFEPHK 618


>gi|357156786|ref|XP_003577575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 694

 Score =  815 bits (2106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/680 (55%), Positives = 504/680 (74%), Gaps = 1/680 (0%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V+  N+++T+L +SG++  A ++F  M  +NTV+YN+M+SA A++GR+ DAR+LF+++P+
Sbjct: 11  VYRSNQELTRLARSGQLAAARRLFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEIPR 70

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN VSWN+MIA    + +V +AR+LFD M   D FSW LM++CY R GEL  AR+  D +
Sbjct: 71  RNTVSWNAMIAACSDHGRVADARDLFDAMPARDGFSWTLMVSCYARAGELGLARDALDRM 130

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P  + TAC+NAM++GYAK G +++A  LL  MP+ +I+SWNS+L G T+NGEM  A KFF
Sbjct: 131 PGDKCTACYNAMISGYAKHGRFDDAVALLREMPAPDIISWNSVLVGLTRNGEMVRAVKFF 190

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
           + M  RD+VSWNLML+GYV   D+DSA   F  +P  NVVSWVT+L+GY R GR+ EAR 
Sbjct: 191 DEMPARDMVSWNLMLEGYVRAGDVDSAAGLFAGVPSPNVVSWVTLLNGYCRAGRIGEARE 250

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
           LFD++P RNV AWN M++ Y++   +EEA +LF EMP++N +SWTTMI   VR  KL EA
Sbjct: 251 LFDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTEMPDKNSISWTTMISALVRGGKLQEA 310

Query: 315 RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMD 374
           + LLD+MP+ + AA+TA++ GY+Q+K +D+A  IFD +   D VCWN MI GY  CG +D
Sbjct: 311 KDLLDKMPFDSFAAKTALMHGYLQSKMIDDARLIFDGLEVRDAVCWNTMISGYVHCGMLD 370

Query: 375 EAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
           EA+ LF+QM NKD+V+WNTMIAGYA   QM  AV IF +M + RNTVSWN++ISGF+QN 
Sbjct: 371 EAMVLFQQMPNKDMVSWNTMIAGYAHDGQMRKAVGIFRKMNQ-RNTVSWNSVISGFVQNG 429

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN 494
             ++AL+ FVLM ++ K+AD ST AC LSACA LAAL +GRQ H L  +SGY+ D F GN
Sbjct: 430 LCVEALQHFVLMRRDAKRADWSTYACCLSACADLAALHVGRQFHSLLARSGYIGDSFAGN 489

Query: 495 SLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP 554
           +LI+ YAKCGRI  A  +F +    D++SWN+LI GYA NG+ TEAI +F EM    V P
Sbjct: 490 ALISAYAKCGRILEARQVFDEMPAPDIVSWNALIDGYASNGHGTEAISVFREMEDNDVRP 549

Query: 555 DPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEM 614
           D VTF+GVLSACSH GL+D G   F  MT+ YA+ P+ EHYACM+DLL R+GRL EAFE+
Sbjct: 550 DEVTFVGVLSACSHAGLIDEGFDFFNSMTKDYALRPVAEHYACMVDLLGRSGRLSEAFEI 609

Query: 615 VKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRW 674
           ++GM+++PNAG+WG +LGACR+H+N +L ++A EKL ELEP KTS Y LLSN+ AEAG+W
Sbjct: 610 IQGMQVQPNAGVWGAMLGACRVHKNHELAQLAAEKLYELEPHKTSNYVLLSNITAEAGKW 669

Query: 675 DEVEKVRVSMEGSGAQKQPG 694
           DE + +RV ++  G  K PG
Sbjct: 670 DEAQNMRVFIKERGVHKTPG 689


>gi|242084152|ref|XP_002442501.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
 gi|241943194|gb|EES16339.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
          Length = 701

 Score =  798 bits (2062), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/680 (54%), Positives = 505/680 (74%), Gaps = 1/680 (0%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  N+++T+L +SG++  A ++F  M ++NTVTYNSM+SA A++GR+++AR LF+ MP 
Sbjct: 18  VFRSNQELTRLARSGQLAAARRLFDSMPRRNTVTYNSMLSALARHGRIDEARALFDGMPS 77

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN VSWN+MIA    + +V +AR LFD+M   D FSW +M++CY R GELE AR++ D +
Sbjct: 78  RNAVSWNAMIAALSDHGRVADARGLFDRMPSRDDFSWTVMVSCYARAGELELARDVLDRM 137

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P  + TAC+NAM++GYAK G +++A KLL  MP+ ++ SWNS L+G T++G+M  A +FF
Sbjct: 138 PGDKCTACYNAMISGYAKNGRFDDAVKLLREMPAPDLFSWNSALAGLTQSGQMVRAVQFF 197

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
           + M E+D+VSWNLML+G+V   DLD+A  FF +I   NVVSWVT+L+GY R GR+ +AR 
Sbjct: 198 DEMVEKDMVSWNLMLEGFVRAGDLDAAASFFGRIESPNVVSWVTLLNGYCRAGRISDARD 257

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
           LFD+MP RNVVA N M+  YV+  ++EEA +LF EMP +N +SWTT+I G  R  KL EA
Sbjct: 258 LFDRMPERNVVACNVMLDGYVRLSRLEEACKLFDEMPGKNSISWTTIISGLARAGKLQEA 317

Query: 315 RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMD 374
           + LLD+M +  +AA+TA++ GY+Q   +++A QIFD +  HD VCWN MI GY Q G ++
Sbjct: 318 KDLLDKMSFNCVAAKTALMHGYLQRNMVNDARQIFDGMEVHDTVCWNTMISGYVQRGMLE 377

Query: 375 EAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
           EA+ LF++M NKD V+WNTMIAGYAQ  QM  A+ IF  M  R+NTVSWN++ISGF+QN 
Sbjct: 378 EAMLLFQRMPNKDTVSWNTMIAGYAQGGQMRKAIGIFRRM-SRKNTVSWNSVISGFVQNG 436

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN 494
             +DA   F+LM +   +AD ST A  L ACA+LAAL +GRQ+H L ++SG++NDLF  N
Sbjct: 437 LFVDAFHHFMLMRRGTNRADWSTYASCLRACANLAALHVGRQLHSLLVRSGHINDLFARN 496

Query: 495 SLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP 554
           +LI+ YAKCGR+  A+ +F +    D++SWN+L+ GYA NG  TEAI +F EM   GV P
Sbjct: 497 ALISTYAKCGRMLEAKQIFDEMVGKDIVSWNALVDGYASNGQGTEAISVFREMEANGVRP 556

Query: 555 DPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEM 614
           D VTF+G+LSACS  GL+D GL  F  MTE Y+++P+ EHYACM DLL RAG+L+EAFE+
Sbjct: 557 DEVTFVGILSACSRAGLIDEGLGFFNSMTEEYSLKPVAEHYACMADLLGRAGKLNEAFEL 616

Query: 615 VKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRW 674
           V+GM+I+PNAG+WG LLGAC+M++N +L R+A EKLSELEP + S Y LLSN+ AEAG+W
Sbjct: 617 VQGMQIQPNAGVWGALLGACQMYKNHELARLAAEKLSELEPCRASNYVLLSNISAEAGKW 676

Query: 675 DEVEKVRVSMEGSGAQKQPG 694
           DE EK R S++  GA K PG
Sbjct: 677 DEAEKARASIKEKGANKPPG 696


>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
 gi|194704572|gb|ACF86370.1| unknown [Zea mays]
 gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
          Length = 700

 Score =  798 bits (2061), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/679 (55%), Positives = 503/679 (74%), Gaps = 2/679 (0%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F  NK++T+L +SG++  A ++F  M  +NTVTYN+M+SA A++GR+++AR LF+ MP R
Sbjct: 19  FRSNKELTRLARSGQLAAARRLFDAMPLRNTVTYNAMLSALARHGRIDEARALFDGMPGR 78

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           N VSWN+MIA    + +V +AR LFD+M   D FSW +M++CY R G+LE AR++ D +P
Sbjct: 79  NTVSWNAMIAALSDHGRVADARSLFDRMPVRDEFSWTVMVSCYARGGDLELARDVLDRMP 138

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
             + TAC+NAM++GYAK G +++A KLL  MP+ ++VSWNS L+G T++GEM  A +FF+
Sbjct: 139 GDKCTACYNAMISGYAKNGRFDDAMKLLREMPAPDLVSWNSALAGLTQSGEMVRAVQFFD 198

Query: 196 AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRL 255
            M  +D+ SWNLML G+V   DL++A  FF KI   NV+SWVT+L+GY R GR+ +AR L
Sbjct: 199 EMV-KDMTSWNLMLAGFVRTGDLNAASSFFAKIESPNVISWVTLLNGYCRAGRIADARDL 257

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR 315
           FD+MP RNVVAWN M+  YV    IEEA +LF EMP +N +SWTT+I G  R  KL EA+
Sbjct: 258 FDRMPERNVVAWNVMLDGYVHLSPIEEACKLFDEMPIKNSISWTTIISGLARAGKLQEAK 317

Query: 316 RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
            LLD+M +  +AA+TA++ GY+Q    D+A +IFD +  HD VCWN MI GY QCG ++E
Sbjct: 318 DLLDKMSFNCVAAKTALMHGYLQRNMADDARRIFDGMEVHDTVCWNTMISGYVQCGILEE 377

Query: 376 AINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEF 435
           A+ LF++M NKD+V+WNTMIAGYAQ  QM  A+ IF  M  RRNTVSWN++ISGF+QN+ 
Sbjct: 378 AMLLFQRMPNKDMVSWNTMIAGYAQDGQMHKAIGIFRRM-NRRNTVSWNSVISGFVQNDR 436

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS 495
            +DAL  F+LM +   +AD ST A  L ACA+LA L +GRQ+H+L ++SG++ND F GN+
Sbjct: 437 FVDALHHFMLMRRGTNRADWSTYASCLRACANLAVLHVGRQLHNLLVRSGHINDSFAGNA 496

Query: 496 LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555
           LI+ YAKCGRI  A+ +F +    D++SWN+LI GYA NG  TEAI +F EM   GV PD
Sbjct: 497 LISTYAKCGRILEAKQIFDEMVYKDIVSWNALIDGYASNGQGTEAIAVFREMEANGVRPD 556

Query: 556 PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV 615
            VTF+G+LSACSH GL+D GL  F  MT+ Y ++P+ EHYACM+DLL RAG+L+EAFE+V
Sbjct: 557 EVTFVGILSACSHAGLIDEGLFFFYSMTKEYLLKPVAEHYACMVDLLGRAGKLNEAFELV 616

Query: 616 KGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWD 675
           +GM+I+PNAG+WG LLGAC MH+N +L ++A E+LSELEP+K S Y LLSN+ AEAG+WD
Sbjct: 617 QGMQIQPNAGVWGALLGACHMHKNHELAQLAAERLSELEPRKASNYVLLSNISAEAGKWD 676

Query: 676 EVEKVRVSMEGSGAQKQPG 694
           E EK R S++  G  K PG
Sbjct: 677 ESEKARASIKEKGVNKPPG 695



 Score =  300 bits (769), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 168/506 (33%), Positives = 268/506 (52%), Gaps = 43/506 (8%)

Query: 9   GNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKL 68
           G  G    + N  I  L   GRV +A  +F +M  ++  ++  M+S YA+ G +  AR +
Sbjct: 74  GMPGRNTVSWNAMIAALSDHGRVADARSLFDRMPVRDEFSWTVMVSCYARGGDLELARDV 133

Query: 69  FEQMP-QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKA 127
            ++MP  +    +N+MI+GY  N +  +A +L  +M  PDL SW   +   T+ GE+ +A
Sbjct: 134 LDRMPGDKCTACYNAMISGYAKNGRFDDAMKLLREMPAPDLVSWNSALAGLTQSGEMVRA 193

Query: 128 RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
            + FD +   +D   WN M+AG+ + G+ N A      + S N++SW ++L+GY + G +
Sbjct: 194 VQFFDEMV--KDMTSWNLMLAGFVRTGDLNAASSFFAKIESPNVISWVTLLNGYCRAGRI 251

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
             A   F+ M ER+VV+WN+MLDGYV L  ++ A K F ++P +N +SW T++SG AR G
Sbjct: 252 ADARDLFDRMPERNVVAWNVMLDGYVHLSPIEEACKLFDEMPIKNSISWTTIISGLARAG 311

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVR 307
           ++ EA+ L D+M    V A  A++  Y+QR   ++A R+F  M   + V W TMI GYV+
Sbjct: 312 KLQEAKDLLDKMSFNCVAAKTALMHGYLQRNMADDARRIFDGMEVHDTVCWNTMISGYVQ 371

Query: 308 IAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367
              L+EA  L  +MP K++ +   MI+GY Q+ +M +A  IF ++   + V WN +I G+
Sbjct: 372 CGILEEAMLLFQRMPNKDMVSWNTMIAGYAQDGQMHKAIGIFRRMNRRNTVSWNSVISGF 431

Query: 368 AQCGRMDEAINLF-------------------------------RQMVN--------KDI 388
            Q  R  +A++ F                               RQ+ N         D 
Sbjct: 432 VQNDRFVDALHHFMLMRRGTNRADWSTYASCLRACANLAVLHVGRQLHNLLVRSGHINDS 491

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
              N +I+ YA+  ++ +A +IF+EM   ++ VSWNALI G+  N    +A+ +F  M  
Sbjct: 492 FAGNALISTYAKCGRILEAKQIFDEM-VYKDIVSWNALIDGYASNGQGTEAIAVFREMEA 550

Query: 449 EGKKADHSTLACALSACAHLAALQLG 474
            G + D  T    LSAC+H   +  G
Sbjct: 551 NGVRPDEVTFVGILSACSHAGLIDEG 576


>gi|115488220|ref|NP_001066597.1| Os12g0289800 [Oryza sativa Japonica Group]
 gi|77554360|gb|ABA97156.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113649104|dbj|BAF29616.1| Os12g0289800 [Oryza sativa Japonica Group]
          Length = 756

 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/676 (52%), Positives = 495/676 (73%), Gaps = 1/676 (0%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
            S VF  N+++T L +SG++  A ++F +M ++N V+YN+M+SA A +GR+ +AR+LF++
Sbjct: 8   ASAVFRSNQELTSLARSGQLAAARRLFEEMPRRNVVSYNAMVSALAHHGRLAEARRLFDE 67

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           MP+RN VSWN+M+     + +V++AR LFD M   + +SW +M++CY R GEL  AREL 
Sbjct: 68  MPRRNPVSWNTMMVACSQHGRVEDARGLFDAMPARNEYSWTIMVSCYVRAGELTLARELL 127

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
           D +P ++  AC+N M++GYAK G + +A  LL  MP+ +IVSWNS+L G  +N E+  + 
Sbjct: 128 DRMPGEKCAACYNTMISGYAKNGRFEDAIALLQEMPAPDIVSWNSVLGGLIRNEEISRSV 187

Query: 192 KFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLE 251
           +FF+ M ++D+VSWNLML+GYV   DLD A  FF +IP  NV+SWV +++GY + GRM E
Sbjct: 188 QFFDEMPDKDLVSWNLMLEGYVRAGDLDVASAFFSRIPSPNVISWVNLVNGYCQAGRMGE 247

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKL 311
           AR LFD+MP RNVVAWN +++ YVQ  Q+E A  LFIEMPE+N +SWTTM+ G+VR  KL
Sbjct: 248 ARELFDRMPERNVVAWNVLLSGYVQFSQVEAAYNLFIEMPEKNSISWTTMVSGFVRSGKL 307

Query: 312 DEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
            EA+ +L +MP  N+ A+TA++ GY+++  +D+A Q+FD I   D VCWN MI GY QCG
Sbjct: 308 QEAKDVLSKMPSDNVGAKTALMHGYLKSNLIDDARQLFDGIVVRDAVCWNTMISGYVQCG 367

Query: 372 RMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFL 431
            +DEA+ LF+QM NKD+++WNTMIAG AQ  Q+  A  IF +M KRRNTVSWN++ISGF+
Sbjct: 368 MLDEAMVLFQQMPNKDMISWNTMIAGCAQGGQIRKAASIFRKM-KRRNTVSWNSIISGFV 426

Query: 432 QNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLF 491
           QN   ++AL+ F+LM ++ K AD  T AC LSA A+LA LQ+GRQ H L +++G+++D  
Sbjct: 427 QNGLFVEALQHFMLMRRDAKSADWCTYACCLSASANLATLQIGRQFHSLLVRTGFISDSS 486

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
            GN+LI+ YAKCGR+  A  +F +    D++SWN+LI GYA NGN +E I +F EM    
Sbjct: 487 PGNALISAYAKCGRMLEARQVFDEMVVQDIVSWNALIDGYASNGNGSEVIAVFREMEANS 546

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
           V PD +T + VLSACSH GL+D GL  F  M ++Y+++P+ EHY CM+DLL RAGRL EA
Sbjct: 547 VRPDEITLVVVLSACSHAGLIDEGLHFFNSMIKLYSLKPVAEHYTCMVDLLGRAGRLREA 606

Query: 612 FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEA 671
           FE+V+GM+I+PNAG+WG LLGACR+H+N ++  +A EKL ELEP K S Y LLSN+  EA
Sbjct: 607 FELVQGMQIQPNAGVWGALLGACRVHKNHEIAWLAAEKLFELEPCKASNYVLLSNICVEA 666

Query: 672 GRWDEVEKVRVSMEGS 687
           G+WD+ +KVRV M+ S
Sbjct: 667 GKWDDADKVRVLMKES 682


>gi|222616932|gb|EEE53064.1| hypothetical protein OsJ_35805 [Oryza sativa Japonica Group]
          Length = 841

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/668 (52%), Positives = 489/668 (73%), Gaps = 1/668 (0%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
            S VF  N+++T L +SG++  A ++F +M ++N V+YN+M+SA A +GR+ +AR+LF++
Sbjct: 8   ASAVFRSNQELTSLARSGQLAAARRLFEEMPRRNVVSYNAMVSALAHHGRLAEARRLFDE 67

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           MP+RN VSWN+M+     + +V++AR LFD M   + +SW +M++CY R GEL  AREL 
Sbjct: 68  MPRRNPVSWNTMMVACSQHGRVEDARGLFDAMPARNEYSWTIMVSCYVRAGELTLARELL 127

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
           D +P ++  AC+N M++GYAK G + +A  LL  MP+ +IVSWNS+L G  +N E+  + 
Sbjct: 128 DRMPGEKCAACYNTMISGYAKNGRFEDAIALLQEMPAPDIVSWNSVLGGLIRNEEISRSV 187

Query: 192 KFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLE 251
           +FF+ M ++D+VSWNLML+GYV   DLD A  FF +IP  NV+SWV +++GY + GRM E
Sbjct: 188 QFFDEMPDKDLVSWNLMLEGYVRAGDLDVASAFFSRIPSPNVISWVNLVNGYCQAGRMGE 247

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKL 311
           AR LFD+MP RNVVAWN +++ YVQ  Q+E A  LFIEMPE+N +SWTTM+ G+VR  KL
Sbjct: 248 ARELFDRMPERNVVAWNVLLSGYVQFSQVEAAYNLFIEMPEKNSISWTTMVSGFVRSGKL 307

Query: 312 DEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
            EA+ +L +MP  N+ A+TA++ GY+++  +D+A Q+FD I   D VCWN MI GY QCG
Sbjct: 308 QEAKDVLSKMPSDNVGAKTALMHGYLKSNLIDDARQLFDGIVVRDAVCWNTMISGYVQCG 367

Query: 372 RMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFL 431
            +DEA+ LF+QM NKD+++WNTMIAG AQ  Q+  A  IF +M KRRNTVSWN++ISGF+
Sbjct: 368 MLDEAMVLFQQMPNKDMISWNTMIAGCAQGGQIRKAASIFRKM-KRRNTVSWNSIISGFV 426

Query: 432 QNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLF 491
           QN   ++AL+ F+LM ++ K AD  T AC LSA A+LA LQ+GRQ H L +++G+++D  
Sbjct: 427 QNGLFVEALQHFMLMRRDAKSADWCTYACCLSASANLATLQIGRQFHSLLVRTGFISDSS 486

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
            GN+LI+ YAKCGR+  A  +F +    D++SWN+LI GYA NGN +E I +F EM    
Sbjct: 487 PGNALISAYAKCGRMLEARQVFDEMVVQDIVSWNALIDGYASNGNGSEVIAVFREMEANS 546

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
           V PD +T + VLSACSH GL+D GL  F  M ++Y+++P+ EHY CM+DLL RAGRL EA
Sbjct: 547 VRPDEITLVVVLSACSHAGLIDEGLHFFNSMIKLYSLKPVAEHYTCMVDLLGRAGRLREA 606

Query: 612 FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEA 671
           FE+V+GM+I+PNAG+WG LLGACR+H+N ++  +A EKL ELEP K S Y LLSN+  EA
Sbjct: 607 FELVQGMQIQPNAGVWGALLGACRVHKNHEIAWLAAEKLFELEPCKASNYVLLSNICVEA 666

Query: 672 GRWDEVEK 679
           G+WD+ +K
Sbjct: 667 GKWDDADK 674


>gi|255559140|ref|XP_002520592.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540252|gb|EEF41825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 525

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/524 (68%), Positives = 439/524 (83%), Gaps = 3/524 (0%)

Query: 41  MSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF 100
           MSQ+NTVTYNSMISAYAKNGRV DAR LF++MP RNLVSWN+MIAGYLHN+KV EA ELF
Sbjct: 1   MSQRNTVTYNSMISAYAKNGRVIDARVLFDKMPCRNLVSWNTMIAGYLHNNKVDEAYELF 60

Query: 101 DKMFRPDLFSWALMITCYTRKGELEKARELFDLLP--NKEDTACWNAMVAGYAKIGNYNE 158
            KM R DLFSW LMITCYT+ G LEKA++L + LP   K+D ACWNAM++GY++ G Y++
Sbjct: 61  VKMPRRDLFSWTLMITCYTQNGMLEKAKQLLNSLPCNYKKDAACWNAMISGYSREGRYDD 120

Query: 159 AKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDL 218
           AK+L + MP KNIVSWNSML+GYT+NG+M LA + F  M ERDVVSWNLM+DG+VEL DL
Sbjct: 121 AKRLFNEMPVKNIVSWNSMLAGYTQNGQMSLALQLFHEMLERDVVSWNLMVDGFVELGDL 180

Query: 219 DSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
           DSAW+FF+K+PE N+VSWVTML G+AR G++LEARRLFDQMP +NVV+WNAMI+AYVQ  
Sbjct: 181 DSAWEFFKKVPEPNIVSWVTMLYGFARKGKLLEARRLFDQMPSKNVVSWNAMISAYVQSR 240

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
           QI+EA +LF EMP+R+ VSWTTMI+GYVR  KLDEAR+ L ++PYKNIAAQTAMISGY++
Sbjct: 241 QIDEAEKLFEEMPKRDSVSWTTMINGYVRAGKLDEARKTLSKLPYKNIAAQTAMISGYIK 300

Query: 339 NKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGY 398
             ++DEA QIF++IGT D+VC+N M+ GY QCGR+DEAI+LF QMV KDIV+WNTM+A Y
Sbjct: 301 YNKIDEARQIFNEIGTPDMVCFNTMLAGYTQCGRVDEAIHLFEQMVKKDIVSWNTMVAAY 360

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           AQ+ QM+ A+K+F+EMG+ RN VSWN+LISGF+ +  +LDAL  FVLM  EGKK D ST 
Sbjct: 361 AQVGQMERALKVFKEMGE-RNLVSWNSLISGFMLHGMYLDALWCFVLMQHEGKKPDQSTF 419

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
           ACALS+CA +AALQ+GRQ+HHL IKSGY+NDLFV N+LITMYAKCG+I  A+L+FK    
Sbjct: 420 ACALSSCAIVAALQVGRQLHHLVIKSGYINDLFVCNALITMYAKCGKILEAKLVFKGICN 479

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
            DV+SWNSLI GYA+NG   EA+ LFEEM + GV PD VTFIGV
Sbjct: 480 ADVVSWNSLIGGYALNGCGEEALTLFEEMKLAGVVPDQVTFIGV 523



 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 166/505 (32%), Positives = 284/505 (56%), Gaps = 22/505 (4%)

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
           ++ +T  +N+M++ YAK G   +A+ L D MP +N+VSWN+M++GY  N ++  A + F 
Sbjct: 2   SQRNTVTYNSMISAYAKNGRVIDARVLFDKMPCRNLVSWNTMIAGYLHNNKVDEAYELFV 61

Query: 196 AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP---EQNVVSWVTMLSGYARNGRMLEA 252
            M  RD+ SW LM+  Y +   L+ A +    +P   +++   W  M+SGY+R GR  +A
Sbjct: 62  KMPRRDLFSWTLMITCYTQNGMLEKAKQLLNSLPCNYKKDAACWNAMISGYSREGRYDDA 121

Query: 253 RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLD 312
           +RLF++MP++N+V+WN+M+A Y Q GQ+  A +LF EM ER+ VSW  M+DG+V +  LD
Sbjct: 122 KRLFNEMPVKNIVSWNSMLAGYTQNGQMSLALQLFHEMLERDVVSWNLMVDGFVELGDLD 181

Query: 313 EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGR 372
            A     ++P  NI +   M+ G+ +  ++ EA ++FD++ + +VV WN MI  Y Q  +
Sbjct: 182 SAWEFFKKVPEPNIVSWVTMLYGFARKGKLLEARRLFDQMPSKNVVSWNAMISAYVQSRQ 241

Query: 373 MDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
           +DEA  LF +M  +D V+W TMI GY +  ++D+A K   ++   +N  +  A+ISG+++
Sbjct: 242 IDEAEKLFEEMPKRDSVSWTTMINGYVRAGKLDEARKTLSKL-PYKNIAAQTAMISGYIK 300

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
                +A +IF     E    D       L+       +     +    +K     D+  
Sbjct: 301 YNKIDEARQIF----NEIGTPDMVCFNTMLAGYTQCGRVDEAIHLFEQMVKK----DIVS 352

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
            N+++  YA+ G+++ A  +FK+    +++SWNSLI+G+ ++G   +A+  F  M  EG 
Sbjct: 353 WNTMVAAYAQVGQMERALKVFKEMGERNLVSWNSLISGFMLHGMYLDALWCFVLMQHEGK 412

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYAC--MIDLLSRAGRLDE 610
            PD  TF   LS+C+ V  +  G +L   + +   I  L   + C  +I + ++ G++ E
Sbjct: 413 KPDQSTFACALSSCAIVAALQVGRQLHHLVIKSGYINDL---FVCNALITMYAKCGKILE 469

Query: 611 AFEMVKGMKIKPNAGI--WGTLLGA 633
           A  + KG+    NA +  W +L+G 
Sbjct: 470 AKLVFKGI---CNADVVSWNSLIGG 491



 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 148/442 (33%), Positives = 261/442 (59%), Gaps = 43/442 (9%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMS---QKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           +F+    IT   ++G +E+A ++ + +    +K+   +N+MIS Y++ GR +DA++LF +
Sbjct: 68  LFSWTLMITCYTQNGMLEKAKQLLNSLPCNYKKDAACWNAMISGYSREGRYDDAKRLFNE 127

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           MP +N+VSWNSM+AGY  N ++  A +LF +M   D+ SW LM+  +   G+L+ A E F
Sbjct: 128 MPVKNIVSWNSMLAGYTQNGQMSLALQLFHEMLERDVVSWNLMVDGFVELGDLDSAWEFF 187

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
             +P + +   W  M+ G+A+ G   EA++L D MPSKN+VSWN+M+S Y ++ ++  A 
Sbjct: 188 KKVP-EPNIVSWVTMLYGFARKGKLLEARRLFDQMPSKNVVSWNAMISAYVQSRQIDEAE 246

Query: 192 KFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLE 251
           K FE M +RD VSW  M++GYV    LD A K   K+P +N+ +   M+SGY +  ++ E
Sbjct: 247 KLFEEMPKRDSVSWTTMINGYVRAGKLDEARKTLSKLPYKNIAAQTAMISGYIKYNKIDE 306

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKL 311
           AR++F+++   ++V +N M+A Y Q G+++EA  LF +M +++ VSW TM+  Y ++ ++
Sbjct: 307 ARQIFNEIGTPDMVCFNTMLAGYTQCGRVDEAIHLFEQMVKKDIVSWNTMVAAYAQVGQM 366

Query: 312 DEARRLLDQMPYKNIAAQTAMISGYV-----------------QNKRMDEA--------- 345
           + A ++  +M  +N+ +  ++ISG++                 + K+ D++         
Sbjct: 367 ERALKVFKEMGERNLVSWNSLISGFMLHGMYLDALWCFVLMQHEGKKPDQSTFACALSSC 426

Query: 346 ------------NQIFDKIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWN 392
                       + +  K G  +D+   N +I  YA+CG++ EA  +F+ + N D+V+WN
Sbjct: 427 AIVAALQVGRQLHHLVIKSGYINDLFVCNALITMYAKCGKILEAKLVFKGICNADVVSWN 486

Query: 393 TMIAGYAQIRQMDDAVKIFEEM 414
           ++I GYA     ++A+ +FEEM
Sbjct: 487 SLIGGYALNGCGEEALTLFEEM 508



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 105/346 (30%), Positives = 188/346 (54%), Gaps = 40/346 (11%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL 88
           G ++ A + F ++ + N V++ +M+  +A+ G++ +AR+LF+QMP +N+VSWN+MI+ Y+
Sbjct: 178 GDLDSAWEFFKKVPEPNIVSWVTMLYGFARKGKLLEARRLFDQMPSKNVVSWNAMISAYV 237

Query: 89  HNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVA 148
            + ++ EA +LF++M + D  SW  MI  Y R G+L++AR+    LP K + A   AM++
Sbjct: 238 QSRQIDEAEKLFEEMPKRDSVSWTTMINGYVRAGKLDEARKTLSKLPYK-NIAAQTAMIS 296

Query: 149 GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLM 208
           GY K    +EA+++ + + + ++V +N+ML+GYT+ G +  A   FE M ++D+VSWN M
Sbjct: 297 GYIKYNKIDEARQIFNEIGTPDMVCFNTMLAGYTQCGRVDEAIHLFEQMVKKDIVSWNTM 356

Query: 209 LDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP-------- 260
           +  Y ++  ++ A K F+++ E+N+VSW +++SG+  +G  L+A   F  M         
Sbjct: 357 VAAYAQVGQMERALKVFKEMGERNLVSWNSLISGFMLHGMYLDALWCFVLMQHEGKKPDQ 416

Query: 261 -------------------------------IRNVVAWNAMIAAYVQRGQIEEAARLFIE 289
                                          I ++   NA+I  Y + G+I EA  +F  
Sbjct: 417 STFACALSSCAIVAALQVGRQLHHLVIKSGYINDLFVCNALITMYAKCGKILEAKLVFKG 476

Query: 290 MPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG 335
           +   + VSW ++I GY      +EA  L ++M    +        G
Sbjct: 477 ICNADVVSWNSLIGGYALNGCGEEALTLFEEMKLAGVVPDQVTFIG 522


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 270/627 (43%), Positives = 399/627 (63%), Gaps = 2/627 (0%)

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDA 165
           PD+  W   I+ + R G  + A  +F+ +P +   + +NAM++GY +   +N A+ L D 
Sbjct: 47  PDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVS-YNAMISGYLRNSKFNLARNLFDQ 105

Query: 166 MPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFF 225
           MP +++ SWN ML+GY +N  +  A + F+ M E+DVVSWN +L GY +   +D A + F
Sbjct: 106 MPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVF 165

Query: 226 QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAAR 285
             +PE+N +SW  +L+ Y  NGR+ EA  LF+     ++++WN ++  +V++ ++ +A  
Sbjct: 166 DNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARW 225

Query: 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
           LF +MP R+ +SW TMI GY +   L +ARRL D+ P +++   TAM+SGYVQN  +DEA
Sbjct: 226 LFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEA 285

Query: 346 NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMD 405
              FD++   + V +N MI GY Q  +MD A  LF  M  ++I +WNTMI GY QI  + 
Sbjct: 286 KTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIA 345

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
            A K F+ M  +R+ VSW A+I+G+ Q+  + +AL +FV + Q+G+  + +T  CALS C
Sbjct: 346 QARKFFDMM-PQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTC 404

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
           A +AAL+LG+QIH  A+K GY    FVGN+L+ MY KCG I  A   F+  +  DV+SWN
Sbjct: 405 ADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWN 464

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
           +++AGYA +G   +A+ +FE M   GV PD +T +GVLSACSH GL+D G + F  MT+ 
Sbjct: 465 TMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKD 524

Query: 586 YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI 645
           Y + P  +HY CMIDLL RAGRL+EA ++++ M  +P A  WG LLGA R+H N +LG  
Sbjct: 525 YGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEK 584

Query: 646 AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705
           A E + ++EPQ +  Y LLSN++A +GRW + +K+R  M   G QK PG SW+EV+N+IH
Sbjct: 585 AAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIH 644

Query: 706 TFLSGDPKQCRTAEICNTLKTLAAQIR 732
           TF  GD        I   L+ L  ++R
Sbjct: 645 TFSVGDCSHPEKERIYAYLEELDLKMR 671



 Score =  361 bits (926), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 197/552 (35%), Positives = 303/552 (54%), Gaps = 44/552 (7%)

Query: 40  QMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEAREL 99
           ++   + + +N  IS + +NG  + A  +F  MP+R+ VS+N+MI+GYL N K   AR L
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNL 102

Query: 100 FDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA 159
           FD+M   DLFSW +M+T Y R   L  AR LFDL+P K D   WN++++GYA+ G  +EA
Sbjct: 103 FDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEK-DVVSWNSLLSGYAQNGYVDEA 161

Query: 160 KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLD 219
           +++ D MP KN +SWN +L+ Y  NG +  A   FE+  + D++SWN ++ G+V    L 
Sbjct: 162 REVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLG 221

Query: 220 SAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ 279
            A   F K+P ++ +SW TM+SGYA+ G + +ARRLFD+ P R+V  W AM++ YVQ G 
Sbjct: 222 DARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGM 281

Query: 280 IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQN 339
           ++EA   F EMPE+N VS+  MI GYV+  K+D AR L + MP +NI++   MI+GY Q 
Sbjct: 282 LDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQI 341

Query: 340 KRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM---------------- 383
             + +A + FD +   D V W  +I GYAQ G  +EA+N+F ++                
Sbjct: 342 GDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCAL 401

Query: 384 ----------VNKDI-------------VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
                     + K I                N ++A Y +   +D+A   FE + + ++ 
Sbjct: 402 STCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGI-EEKDV 460

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
           VSWN +++G+ ++ F   AL +F  M   G K D  T+   LSAC+H   L  G +  + 
Sbjct: 461 VSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYS 520

Query: 481 AIKS-GYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD-PVDVISWNSLIAGYAINGNAT 538
             K  G +        +I +  + GR++ A+ L ++        SW +L+    I+GN T
Sbjct: 521 MTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGN-T 579

Query: 539 EAIKLFEEMVME 550
           E  +   EMV +
Sbjct: 580 ELGEKAAEMVFK 591



 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 140/475 (29%), Positives = 256/475 (53%), Gaps = 21/475 (4%)

Query: 197 MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF 256
           +++ D++ WN  +  ++     DSA   F  +P ++ VS+  M+SGY RN +   AR LF
Sbjct: 44  VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLF 103

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
           DQMP R++ +WN M+  YV+  ++ +A RLF  MPE++ VSW +++ GY +   +DEAR 
Sbjct: 104 DQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEARE 163

Query: 317 LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
           + D MP KN  +   +++ YV N R++EA  +F+     D++ WN ++ G+ +  ++ +A
Sbjct: 164 VFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDA 223

Query: 377 INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
             LF +M  +D ++WNTMI+GYAQ   +  A ++F+E    R+  +W A++SG++QN   
Sbjct: 224 RWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDE-SPTRDVFTWTAMVSGYVQNGM- 281

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSL 496
           LD  K F     E  +  ++ +   ++       + + R++     +S    ++   N++
Sbjct: 282 LDEAKTFFDEMPEKNEVSYNAM---IAGYVQTKKMDIAREL----FESMPCRNISSWNTM 334

Query: 497 ITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
           IT Y + G I  A   F      D +SW ++IAGYA +G+  EA+ +F E+  +G + + 
Sbjct: 335 ITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNR 394

Query: 557 VTFIGVLSACSHVGLVDGGLKLF-ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV 615
            TF   LS C+ +  ++ G ++  + +   Y     V +   ++ +  + G +DEA +  
Sbjct: 395 ATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGN--ALLAMYFKCGSIDEANDTF 452

Query: 616 KGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVE-----KLSELEPQKTSCYALLS 665
           +G++ K +   W T+L     H     GR A+      K + ++P + +   +LS
Sbjct: 453 EGIEEK-DVVSWNTMLAGYARH---GFGRQALTVFESMKTAGVKPDEITMVGVLS 503



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 9/159 (5%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G+  F  N  +    K G ++EA   F  + +K+ V++N+M++ YA++G    A  +FE 
Sbjct: 426 GTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFES 485

Query: 72  MPQRNLVSWNSMIAGYL----HNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKG 122
           M    +      + G L    H   +    E F  M +     P    +  MI    R G
Sbjct: 486 MKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAG 545

Query: 123 ELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKK 161
            LE+A++L   +P +   A W A++      GN    +K
Sbjct: 546 RLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEK 584


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 271/626 (43%), Positives = 403/626 (64%), Gaps = 3/626 (0%)

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           D+  W   I+ Y RKG+ E A  +F+ +  +  T  +NAM++GY     ++ A+K+ + M
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGM-RRRSTVTYNAMISGYLSNNKFDCARKVFEKM 117

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
           P ++++SWN MLSGY KNG +  A   F  M E+DVVSWN ML G+ +   ++ A K F 
Sbjct: 118 PDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFD 177

Query: 227 KIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
           ++  +N +SW  +LS Y +NGR+ +ARRLFD      +V+WN ++  YV++ ++++A  L
Sbjct: 178 QMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSL 237

Query: 287 FIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEAN 346
           F  MP R+ +SW  MI GY +   L EARRL +++P +++ A TAM+SG+VQN  +DEA 
Sbjct: 238 FDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEAT 297

Query: 347 QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDD 406
           +IF+++   + V WN MI GY Q  ++++A  LF QM +++  +WNTM+ GYAQ   +D 
Sbjct: 298 RIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQ 357

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
           A  +F+EM  +R+ +SW A+ISG+ Q+    +AL +F+ M ++G   + S LACALS+CA
Sbjct: 358 AKILFDEM-PQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCA 416

Query: 467 HLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNS 526
            +AAL+LG+Q+H   +K+G+      GN+L+ MY KCG I+ A  +F+D    D++SWN+
Sbjct: 417 EIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNT 476

Query: 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVY 586
           +IAGYA +G   EA+ LFE M M  + PD VT +GVLSACSH GLVD G++ F  M + Y
Sbjct: 477 MIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNY 535

Query: 587 AIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIA 646
            I    +HY CMIDLL RAGRLDEA  ++K M   P+A  WG LLGA R+H + +LG  A
Sbjct: 536 GITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKA 595

Query: 647 VEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHT 706
            EK+ E+EP  +  Y LLSN++A +GRW EV ++R  M   G +K PG SW+E++N+ H 
Sbjct: 596 AEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHI 655

Query: 707 FLSGDPKQCRTAEICNTLKTLAAQIR 732
           F  GD        I   L+ L  +++
Sbjct: 656 FTVGDCSHPEAERIYAYLEELDLELK 681



 Score =  357 bits (917), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 202/572 (35%), Positives = 321/572 (56%), Gaps = 56/572 (9%)

Query: 39  SQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARE 98
           S +   + V +N  ISAY + G+   A  +F  M +R+ V++N+MI+GYL N+K   AR+
Sbjct: 53  STIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARK 112

Query: 99  LFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNE 158
           +F+KM   DL SW +M++ Y + G L  AR LF+ +P K D   WNAM++G+A+ G   E
Sbjct: 113 VFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEK-DVVSWNAMLSGFAQNGFVEE 171

Query: 159 AKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDL 218
           A+K+ D M  KN +SWN +LS Y +NG +  A + F++  + ++VSWN ++ GYV    L
Sbjct: 172 ARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRL 231

Query: 219 DSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
           D A   F ++P ++ +SW  M++GYA+NG + EARRLF+++PIR+V AW AM++ +VQ G
Sbjct: 232 DDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNG 291

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
            ++EA R+F EMPE+N VSW  MI GYV+  ++++AR L DQMP +N ++   M++GY Q
Sbjct: 292 MLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQ 351

Query: 339 NKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM------VNKD----- 387
              +D+A  +FD++   D + W  MI GYAQ G+ +EA++LF +M      +N+      
Sbjct: 352 CGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACA 411

Query: 388 ----------------------------IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRN 419
                                        +  N ++A Y +   +++A  +FE++ + ++
Sbjct: 412 LSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITE-KD 470

Query: 420 TVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHH 479
            VSWN +I+G+ ++ F  +AL +F  M     K D  TL   LSAC+H   +  G +   
Sbjct: 471 IVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGLVDKGMEY-- 527

Query: 480 LAIKSGYVNDLFVGNS-----LITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYA 532
               S Y N     N+     +I +  + GR+  A  L K   P   D  +W +L+    
Sbjct: 528 --FNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSM-PFYPDAATWGALLGASR 584

Query: 533 INGNATEAIKLFEEMVMEGVAPDPVTFIGVLS 564
           I+G+ TE  +   E V E + PD      +LS
Sbjct: 585 IHGD-TELGEKAAEKVFE-MEPDNSGMYVLLS 614


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 270/627 (43%), Positives = 399/627 (63%), Gaps = 2/627 (0%)

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDA 165
           PD+  W   I+ + R G  + A  +F+ +P +   + +NAM++GY +   +N A+ L D 
Sbjct: 47  PDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVS-YNAMISGYLRNSKFNLARNLFDQ 105

Query: 166 MPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFF 225
           MP +++ SWN ML+GY +N  +  A + F+ M E+DVVSWN +L GY +   +D A + F
Sbjct: 106 MPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVF 165

Query: 226 QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAAR 285
             +PE+N +SW  +L+ Y  NGR+ EA  LF+     ++++WN ++  +V++ ++ +A  
Sbjct: 166 DNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARW 225

Query: 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
           LF +MP R+ +SW TMI GY +   L +ARRL D+ P +++   TAM+SGYVQN  +DEA
Sbjct: 226 LFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEA 285

Query: 346 NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMD 405
              FD++   + V +N MI GY Q  +MD A  LF  M  ++I +WNTMI GY QI  + 
Sbjct: 286 KTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIA 345

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
            A K F+ M  +R+ VSW A+I+G+ Q+  + +AL +FV + Q+G+  + +T  CALS C
Sbjct: 346 QARKFFDMM-PQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTC 404

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
           A +AAL+LG+QIH  A+K GY    FVGN+L+ MY KCG I  A   F+  +  DV+SWN
Sbjct: 405 ADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWN 464

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
           +++AGYA +G   +A+ +FE M   GV PD +T +GVLSACSH GL+D G + F  MT+ 
Sbjct: 465 TMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKD 524

Query: 586 YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI 645
           Y + P  +HY CMIDLL RAGRL+EA ++++ M  +P A  WG LLGA R+H N +LG  
Sbjct: 525 YGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEK 584

Query: 646 AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705
           A E + ++EPQ +  Y LLSN++A +GRW + +K+R  M   G QK PG SW+EV+N+IH
Sbjct: 585 AAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIH 644

Query: 706 TFLSGDPKQCRTAEICNTLKTLAAQIR 732
           TF  GD        I   L+ L  ++R
Sbjct: 645 TFSVGDCSHPEKERIYAYLEELDLKMR 671



 Score =  361 bits (926), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 197/552 (35%), Positives = 303/552 (54%), Gaps = 44/552 (7%)

Query: 40  QMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEAREL 99
           ++   + + +N  IS + +NG  + A  +F  MP+R+ VS+N+MI+GYL N K   AR L
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNL 102

Query: 100 FDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA 159
           FD+M   DLFSW +M+T Y R   L  AR LFDL+P K D   WN++++GYA+ G  +EA
Sbjct: 103 FDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEK-DVVSWNSLLSGYAQNGYVDEA 161

Query: 160 KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLD 219
           +++ D MP KN +SWN +L+ Y  NG +  A   FE+  + D++SWN ++ G+V    L 
Sbjct: 162 REVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLG 221

Query: 220 SAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ 279
            A   F K+P ++ +SW TM+SGYA+ G + +ARRLFD+ P R+V  W AM++ YVQ G 
Sbjct: 222 DARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGM 281

Query: 280 IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQN 339
           ++EA   F EMPE+N VS+  MI GYV+  K+D AR L + MP +NI++   MI+GY Q 
Sbjct: 282 LDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQI 341

Query: 340 KRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM---------------- 383
             + +A + FD +   D V W  +I GYAQ G  +EA+N+F ++                
Sbjct: 342 GDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCAL 401

Query: 384 ----------VNKDI-------------VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
                     + K I                N ++A Y +   +D+A   FE + + ++ 
Sbjct: 402 STCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGI-EEKDV 460

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
           VSWN +++G+ ++ F   AL +F  M   G K D  T+   LSAC+H   L  G +  + 
Sbjct: 461 VSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYS 520

Query: 481 AIKS-GYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD-PVDVISWNSLIAGYAINGNAT 538
             K  G +        +I +  + GR++ A+ L ++        SW +L+    I+GN T
Sbjct: 521 MTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGN-T 579

Query: 539 EAIKLFEEMVME 550
           E  +   EMV +
Sbjct: 580 ELGEKAAEMVFK 591



 Score =  238 bits (607), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 140/475 (29%), Positives = 256/475 (53%), Gaps = 21/475 (4%)

Query: 197 MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF 256
           +++ D++ WN  +  ++     DSA   F  +P ++ VS+  M+SGY RN +   AR LF
Sbjct: 44  VKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLF 103

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
           DQMP R++ +WN M+  YV+  ++ +A RLF  MPE++ VSW +++ GY +   +DEAR 
Sbjct: 104 DQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEARE 163

Query: 317 LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
           + D MP KN  +   +++ YV N R++EA  +F+     D++ WN ++ G+ +  ++ +A
Sbjct: 164 VFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDA 223

Query: 377 INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
             LF +M  +D ++WNTMI+GYAQ   +  A ++F+E    R+  +W A++SG++QN   
Sbjct: 224 RWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDE-SPTRDVFTWTAMVSGYVQNGM- 281

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSL 496
           LD  K F     E  +  ++ +   ++       + + R++     +S    ++   N++
Sbjct: 282 LDEAKTFFDEMPEKNEVSYNAM---IAGYVQTKKMDIAREL----FESMPCRNISSWNTM 334

Query: 497 ITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
           IT Y + G I  A   F      D +SW ++IAGYA +G+  EA+ +F E+  +G + + 
Sbjct: 335 ITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNR 394

Query: 557 VTFIGVLSACSHVGLVDGGLKLF-ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV 615
            TF   LS C+ +  ++ G ++  + +   Y     V +   ++ +  + G +DEA +  
Sbjct: 395 ATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGN--ALLAMYFKCGSIDEANDTF 452

Query: 616 KGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVE-----KLSELEPQKTSCYALLS 665
           +G++ K +   W T+L     H     GR A+      K + ++P + +   +LS
Sbjct: 453 EGIEEK-DVVSWNTMLAGYARH---GFGRQALTVFESMKTAGVKPDEITMVGVLS 503



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 68/143 (47%), Gaps = 38/143 (26%)

Query: 568 HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIW 627
           + GL+D G + F  M E Y++ P  +HY CMIDLL R  RL+E                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE----------------- 818

Query: 628 GTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGS 687
           G LLGA R+H N +LG  A +   ++ PQ +                  + K+R      
Sbjct: 819 GALLGASRIHGNTELGEKAAQMFFKMGPQNSG-----------------ISKMR----DV 857

Query: 688 GAQKQPGCSWIEVKNQIHTFLSG 710
           G QK PG SW EV+N+IHTF  G
Sbjct: 858 GVQKVPGYSWFEVQNKIHTFSVG 880



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 9/159 (5%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G+  F  N  +    K G ++EA   F  + +K+ V++N+M++ YA++G    A  +FE 
Sbjct: 426 GTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFES 485

Query: 72  MPQRNLVSWNSMIAGYL----HNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKG 122
           M    +      + G L    H   +    E F  M +     P    +  MI    R G
Sbjct: 486 MKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAG 545

Query: 123 ELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKK 161
            LE+A++L   +P +   A W A++      GN    +K
Sbjct: 546 RLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEK 584


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  567 bits (1460), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 270/626 (43%), Positives = 402/626 (64%), Gaps = 3/626 (0%)

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           D+  W   I+ Y RKG+ E A  +F+ +  +  T  +NAM++GY     ++ A+K+ + M
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGM-RRRSTVTYNAMISGYLSNNKFDCARKVFEKM 117

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
           P ++++SWN MLSGY KNG +  A   F  M E+DVVSWN ML G+ +   ++ A K F 
Sbjct: 118 PDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFD 177

Query: 227 KIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
           ++  +N +SW  +LS Y +NGR+ +ARRLFD      +V+WN ++  YV++ ++++A  L
Sbjct: 178 QMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSL 237

Query: 287 FIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEAN 346
           F  MP R+ +SW  MI GY +   L EARRL +++P +++ A TAM+SG+VQN  +DEA 
Sbjct: 238 FDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEAT 297

Query: 347 QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDD 406
           +IF+++   + V WN MI GY Q  ++++A  LF QM +++  +WNTM+ GYAQ   +D 
Sbjct: 298 RIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNIDQ 357

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
           A  +F+EM  +R+ +SW A+ISG+ Q+    +AL +F+ M ++G   + S LACALS+CA
Sbjct: 358 AKILFDEM-PQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCA 416

Query: 467 HLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNS 526
            +AAL+LG+Q+H   +K+G+      GN+L+ MY KCG I+ A  +F+D    D++SWN+
Sbjct: 417 EIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNT 476

Query: 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVY 586
           +IAGYA +G   EA+ LFE M M  + PD VT +GVLSACSH G VD G++ F  M + Y
Sbjct: 477 MIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNY 535

Query: 587 AIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIA 646
            I    +HY CMIDLL RAGRLDEA  ++K M   P+A  WG LLGA R+H + +LG  A
Sbjct: 536 GITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKA 595

Query: 647 VEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHT 706
            EK+ E+EP  +  Y LLSN++A +GRW EV ++R  M   G +K PG SW+E++N+ H 
Sbjct: 596 AEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHI 655

Query: 707 FLSGDPKQCRTAEICNTLKTLAAQIR 732
           F  GD        I   L+ L  +++
Sbjct: 656 FTVGDCSHPEAERIYAYLEELDLELK 681



 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 202/572 (35%), Positives = 321/572 (56%), Gaps = 56/572 (9%)

Query: 39  SQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARE 98
           S +   + V +N  ISAY + G+   A  +F  M +R+ V++N+MI+GYL N+K   AR+
Sbjct: 53  STIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARK 112

Query: 99  LFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNE 158
           +F+KM   DL SW +M++ Y + G L  AR LF+ +P K D   WNAM++G+A+ G   E
Sbjct: 113 VFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEK-DVVSWNAMLSGFAQNGFVEE 171

Query: 159 AKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDL 218
           A+K+ D M  KN +SWN +LS Y +NG +  A + F++  + ++VSWN ++ GYV    L
Sbjct: 172 ARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRL 231

Query: 219 DSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
           D A   F ++P ++ +SW  M++GYA+NG + EARRLF+++PIR+V AW AM++ +VQ G
Sbjct: 232 DDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNG 291

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
            ++EA R+F EMPE+N VSW  MI GYV+  ++++AR L DQMP +N ++   M++GY Q
Sbjct: 292 MLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQ 351

Query: 339 NKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM------VNKD----- 387
              +D+A  +FD++   D + W  MI GYAQ G+ +EA++LF +M      +N+      
Sbjct: 352 CGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACA 411

Query: 388 ----------------------------IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRN 419
                                        +  N ++A Y +   +++A  +FE++ + ++
Sbjct: 412 LSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITE-KD 470

Query: 420 TVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHH 479
            VSWN +I+G+ ++ F  +AL +F  M     K D  TL   LSAC+H   +  G +   
Sbjct: 471 IVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGFVDKGMEY-- 527

Query: 480 LAIKSGYVNDLFVGNS-----LITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYA 532
               S Y N     N+     +I +  + GR+  A  L K   P   D  +W +L+    
Sbjct: 528 --FNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSM-PFYPDAATWGALLGASR 584

Query: 533 INGNATEAIKLFEEMVMEGVAPDPVTFIGVLS 564
           I+G+ TE  +   E V E + PD      +LS
Sbjct: 585 IHGD-TELGEKAAEKVFE-MEPDNSGMYVLLS 614


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  566 bits (1459), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 271/626 (43%), Positives = 401/626 (64%), Gaps = 2/626 (0%)

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           D+  W + I+ Y R G   +A  +F  +P +  +  +N M++GY + G +  A+KL D M
Sbjct: 63  DIKEWNVAISSYMRTGRCNEALRVFKRMP-RWSSVSYNGMISGYLRNGEFELARKLFDEM 121

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
           P +++VSWN M+ GY +N  +  A + FE M ERDV SWN ML GY +   +D A   F 
Sbjct: 122 PERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFD 181

Query: 227 KIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
           ++PE+N VSW  +LS Y +N +M EA  LF       +V+WN ++  +V++ +I EA + 
Sbjct: 182 RMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQF 241

Query: 287 FIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEAN 346
           F  M  R+ VSW T+I GY +  K+DEAR+L D+ P +++   TAM+SGY+QN+ ++EA 
Sbjct: 242 FDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEAR 301

Query: 347 QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDD 406
           ++FDK+   + V WN M+ GY Q  RM+ A  LF  M  +++ TWNTMI GYAQ  ++ +
Sbjct: 302 ELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISE 361

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
           A  +F++M KR + VSW A+I+G+ Q+    +AL++FV M +EG + + S+ + ALS CA
Sbjct: 362 AKNLFDKMPKR-DPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCA 420

Query: 467 HLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNS 526
            + AL+LG+Q+H   +K GY    FVGN+L+ MY KCG I+ A  LFK+    D++SWN+
Sbjct: 421 DVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNT 480

Query: 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVY 586
           +IAGY+ +G    A++ FE M  EG+ PD  T + VLSACSH GLVD G + F  MT+ Y
Sbjct: 481 MIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDY 540

Query: 587 AIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIA 646
            + P  +HYACM+DLL RAG L++A  ++K M  +P+A IWGTLLGA R+H N +L   A
Sbjct: 541 GVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETA 600

Query: 647 VEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHT 706
            +K+  +EP+ +  Y LLSN++A +GRW +V K+RV M   G +K PG SWIE++N+ HT
Sbjct: 601 ADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHT 660

Query: 707 FLSGDPKQCRTAEICNTLKTLAAQIR 732
           F  GD       EI   L+ L  +++
Sbjct: 661 FSVGDEFHPEKDEIFAFLEELDLRMK 686



 Score =  358 bits (919), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 196/542 (36%), Positives = 314/542 (57%), Gaps = 49/542 (9%)

Query: 49  YNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL 108
           +N  IS+Y + GR N+A ++F++MP+ + VS+N MI+GYL N + + AR+LFD+M   DL
Sbjct: 67  WNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDL 126

Query: 109 FSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS 168
            SW +MI  Y R   L KARELF+++P + D   WN M++GYA+ G  ++A+ + D MP 
Sbjct: 127 VSWNVMIKGYVRNRNLGKARELFEIMPER-DVCSWNTMLSGYAQNGCVDDARSVFDRMPE 185

Query: 169 KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI 228
           KN VSWN++LS Y +N +M  A   F++ E   +VSWN +L G+V+   +  A +FF  +
Sbjct: 186 KNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSM 245

Query: 229 PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFI 288
             ++VVSW T+++GYA++G++ EAR+LFD+ P+++V  W AM++ Y+Q   +EEA  LF 
Sbjct: 246 NVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFD 305

Query: 289 EMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQI 348
           +MPERN VSW  M+ GYV+  +++ A+ L D MP +N++    MI+GY Q  ++ EA  +
Sbjct: 306 KMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNL 365

Query: 349 FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM------VNK-----------DIVTW 391
           FDK+   D V W  MI GY+Q G   EA+ LF QM      +N+           D+V  
Sbjct: 366 FDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVAL 425

Query: 392 ----------------------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
                                 N ++  Y +   +++A  +F+EM   ++ VSWN +I+G
Sbjct: 426 ELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAG-KDIVSWNTMIAG 484

Query: 430 FLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS-GYVN 488
           + ++ F   AL+ F  M +EG K D +T+   LSAC+H   +  GRQ  +   +  G + 
Sbjct: 485 YSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMP 544

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAINGNA----TEAIK 542
           +      ++ +  + G +++A  L K+   +P D   W +L+    ++GN     T A K
Sbjct: 545 NSQHYACMVDLLGRAGLLEDAHNLMKNMPFEP-DAAIWGTLLGASRVHGNTELAETAADK 603

Query: 543 LF 544
           +F
Sbjct: 604 IF 605



 Score =  251 bits (641), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 147/473 (31%), Positives = 262/473 (55%), Gaps = 21/473 (4%)

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
           + D+  WN+ +  Y+     + A + F+++P  + VS+  M+SGY RNG    AR+LFD+
Sbjct: 61  DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
           MP R++V+WN MI  YV+   + +A  LF  MPER+  SW TM+ GY +   +D+AR + 
Sbjct: 121 MPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVF 180

Query: 319 DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
           D+MP KN  +  A++S YVQN +M+EA  +F       +V WN ++ G+ +  ++ EA  
Sbjct: 181 DRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQ 240

Query: 379 LFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
            F  M  +D+V+WNT+I GYAQ  ++D+A ++F+E    ++  +W A++SG++QN    +
Sbjct: 241 FFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDE-SPVQDVFTWTAMVSGYIQNRMVEE 299

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
           A ++F  M +  + + ++ LA  +        +++ +++  +        ++   N++IT
Sbjct: 300 ARELFDKMPERNEVSWNAMLAGYVQG----ERMEMAKELFDVMP----CRNVSTWNTMIT 351

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
            YA+CG+I  A+ LF      D +SW ++IAGY+ +G++ EA++LF +M  EG   +  +
Sbjct: 352 GYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSS 411

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTE-VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKG 617
           F   LS C+ V  ++ G +L   + +  Y     V +   ++ +  + G ++EA ++ K 
Sbjct: 412 FSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGN--ALLLMYCKCGSIEEANDLFKE 469

Query: 618 MKIKPNAGIWGTLLGACRMHQNIKLGRIAVE-----KLSELEPQKTSCYALLS 665
           M  K     W T++     H     G +A+      K   L+P   +  A+LS
Sbjct: 470 MAGKDIVS-WNTMIAGYSRH---GFGEVALRFFESMKREGLKPDDATMVAVLS 518



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 139/431 (32%), Positives = 222/431 (51%), Gaps = 50/431 (11%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  ++   ++G V++A  +F +M +KN V++N+++SAY +N ++ +A  LF+    
Sbjct: 157 VCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSREN 216

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
             LVSWN ++ G++   K+ EAR+ FD M   D+ SW  +IT Y + G++++AR+LFD  
Sbjct: 217 WALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDES 276

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P  +D   W AMV+GY +     EA++L D MP +N VSWN+ML+GY +   M +A + F
Sbjct: 277 P-VQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELF 335

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
           + M  R+V +WN M+ GY +   +  A   F K+P+++ VSW  M++GY+++G   EA R
Sbjct: 336 DVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALR 395

Query: 255 LFDQM-----------------PIRNVVAW----------------------NAMIAAYV 275
           LF QM                    +VVA                       NA++  Y 
Sbjct: 396 LFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYC 455

Query: 276 QRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI----AAQTA 331
           + G IEEA  LF EM  ++ VSW TMI GY R    + A R  + M  + +    A   A
Sbjct: 456 KCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVA 515

Query: 332 MISGYVQNKRMDEANQIFDKIGTHDVVCWN-----VMIKGYAQCGRMDEAINLFRQM-VN 385
           ++S       +D+  Q F  +     V  N      M+    + G +++A NL + M   
Sbjct: 516 VLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFE 575

Query: 386 KDIVTWNTMIA 396
            D   W T++ 
Sbjct: 576 PDAAIWGTLLG 586


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  566 bits (1458), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 276/632 (43%), Positives = 406/632 (64%), Gaps = 34/632 (5%)

Query: 134 LPNKEDTAC--WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
           LP   D+    WN  ++ Y + G  +EA ++   MP  + VS+N+M+SGY +NGE  LA 
Sbjct: 51  LPKSGDSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELAR 110

Query: 192 KFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLE 251
             F+ M ERD+VSWN+M+ GYV   +L  A + F+++PE++V SW T+LSGYA+NG + +
Sbjct: 111 MLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDD 170

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEA---------------------------- 283
           ARR+FD+MP +N V+WNA+++AYVQ  ++EEA                            
Sbjct: 171 ARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKI 230

Query: 284 --ARLFIE-MPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340
             AR F + M  R+ VSW T+I GY +  ++DEAR+L D+ P  ++   TAM+SGY+QN+
Sbjct: 231 VEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNR 290

Query: 341 RMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQ 400
            ++EA ++FD++   + V WN M+ GY Q  R++ A  LF  M  +++ TWNTMI GYAQ
Sbjct: 291 MVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQ 350

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
             ++ +A  +F++M KR + VSW A+I+G+ Q+    +AL++FVLM +EG + + S+ + 
Sbjct: 351 CGKISEAKNLFDKMPKR-DPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSS 409

Query: 461 ALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVD 520
           ALS CA + AL+LG+Q+H   +K GY    FVGN+L+ MY KCG I+ A  LFK+    D
Sbjct: 410 ALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKD 469

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE 580
           ++SWN++IAGY+ +G   EA++ FE M  EG+ PD  T + VLSACSH GLVD G + F 
Sbjct: 470 IVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFH 529

Query: 581 CMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNI 640
            MT+ Y + P  +HYACM+DLL RAG L+EA  ++K M  +P+A IWGTLLGA R+H N 
Sbjct: 530 TMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNT 589

Query: 641 KLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEV 700
           +L   A +K+  +EP+ +  Y LLSN++A +GRW +V K+RV M   G +K PG SWIE+
Sbjct: 590 ELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEI 649

Query: 701 KNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +N+ HTF  GD       EI   L+ L  +++
Sbjct: 650 QNKTHTFSVGDEFHPEKDEIFAFLEDLDLRMK 681



 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 197/572 (34%), Positives = 311/572 (54%), Gaps = 80/572 (13%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I+   ++GR  EA+++F +M + ++V+YN+MIS Y +NG    AR LF++MP+R+LV
Sbjct: 63  NVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERDLV 122

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           SWN MI GY+ N  + +ARELF++M   D+ SW  +++ Y + G ++ AR +FD +P K 
Sbjct: 123 SWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKN 182

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           D + WNA+++ Y +     EA  L  +  +  +VSWN +L G+ K  ++  A +FF++M+
Sbjct: 183 DVS-WNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMK 241

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
            RDVVSWN ++ GY +  ++D A + F + P  +V +W  M+SGY +N  + EAR LFD+
Sbjct: 242 VRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDR 301

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
           MP RN V+WNAM+A YVQ  ++E A  LF  MP RN  +W TMI GY +  K+ EA+ L 
Sbjct: 302 MPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLF 361

Query: 319 DQMPYKNIAAQTAMISGYVQNKRMDEANQIF-----------------------DKI--- 352
           D+MP ++  +  AMI+GY Q+    EA ++F                       D +   
Sbjct: 362 DKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALE 421

Query: 353 -----------GTHDVVCW--NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYA 399
                      G ++  C+  N ++  Y +CG ++EA +LF++M  KDIV+WNTMIAGY+
Sbjct: 422 LGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYS 481

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
                                           ++ F  +AL+ F  M +EG K D +T+ 
Sbjct: 482 --------------------------------RHGFGEEALRFFESMKREGLKPDDATMV 509

Query: 460 CALSACAHLAALQLGRQIHHLAIKS-GYVNDLFVGNSLITMYAKCGRIQNAELLFKDA-- 516
             LSAC+H   +  GRQ  H   +  G   +      ++ +  + G ++ A  L K+   
Sbjct: 510 AVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPF 569

Query: 517 DPVDVISWNSLIAGYAINGNA----TEAIKLF 544
           +P D   W +L+    ++GN     T A K+F
Sbjct: 570 EP-DAAIWGTLLGASRVHGNTELAETAADKIF 600


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 268/626 (42%), Positives = 403/626 (64%), Gaps = 2/626 (0%)

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           D+  W + IT + R G+ + A  LF+ +P +   + WNAM++G      +  A++L + M
Sbjct: 48  DIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSIS-WNAMISGCLSNDKFYLARQLFEKM 106

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
           P++++VSWN M+SG  +   +  A   F+ M ERDVVSWN ML GY +   +  A + F 
Sbjct: 107 PTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFD 166

Query: 227 KIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
           ++P +N +SW  ML+ Y +NGR+ +ARRLF+      +++WN M+  YV+R ++ +A  +
Sbjct: 167 EMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGI 226

Query: 287 FIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEAN 346
           F  MPER+ VSW TMI GY +  +L EA+RL ++ P +++   TAM+SGYVQN  +DEA 
Sbjct: 227 FDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEAR 286

Query: 347 QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDD 406
           ++FD +   + V WN +I GY QC RMD+A  LF  M  +++ +WNTMI GYAQ   +  
Sbjct: 287 RVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQ 346

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
           A   F+ M  +R+++SW A+I+G+ Q+ +  +AL +FV M ++G++ + ST    LS CA
Sbjct: 347 ARNFFDRM-PQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCA 405

Query: 467 HLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNS 526
            +AAL+LG+Q+H   +K+G  +  +VGN+L+ MY KCG I +A ++F+  +  +V+SWN+
Sbjct: 406 EIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNT 465

Query: 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVY 586
           +IAGYA +G   EA+ LFE M   G+ PD VT +GVLSACSH GLVD G + F  MT+ Y
Sbjct: 466 MIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDY 525

Query: 587 AIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIA 646
            I    +HY CMIDLL RAGRLD+A  ++K M  +P+A  WG LLGA R+H N +LG  A
Sbjct: 526 GITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKA 585

Query: 647 VEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHT 706
            + + E+EP  +  Y LLSN++A +GRW +V ++R+ M   G +K PG SW+EV+N+IHT
Sbjct: 586 AKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHT 645

Query: 707 FLSGDPKQCRTAEICNTLKTLAAQIR 732
           F  GD        I   L+ L  +++
Sbjct: 646 FTVGDSVHPERDRIYTFLEELDLKMK 671



 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/568 (35%), Positives = 323/568 (56%), Gaps = 47/568 (8%)

Query: 39  SQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARE 98
           S  +  + V +N  I+ + +NG+ + A +LF  MP+R+ +SWN+MI+G L NDK   AR+
Sbjct: 42  SLATDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQ 101

Query: 99  LFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNE 158
           LF+KM   DL SW +MI+   R   L  AR LFD +P + D   WNAM++GYA+ G   E
Sbjct: 102 LFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPER-DVVSWNAMLSGYAQNGYVKE 160

Query: 159 AKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDL 218
           AK++ D MP KN +SWN ML+ Y +NG +  A + FE+  + +++SWN M+ GYV+ + L
Sbjct: 161 AKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRL 220

Query: 219 DSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
             A   F ++PE++ VSW TM+SGYA+NG +LEA+RLF++ P+R+V  W AM++ YVQ G
Sbjct: 221 VDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNG 280

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
            ++EA R+F  MPE+N VSW  +I GYV+  ++D+AR L + MP +N+++   MI+GY Q
Sbjct: 281 MLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQ 340

Query: 339 NKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM------VNKDIVT-- 390
           N  + +A   FD++   D + W  +I GYAQ G  +EA++LF +M      +N+   T  
Sbjct: 341 NGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTST 400

Query: 391 -------------------------------WNTMIAGYAQIRQMDDAVKIFEEMGKRRN 419
                                           N ++  Y +   +DDA  +FE + + + 
Sbjct: 401 LSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGI-EEKE 459

Query: 420 TVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ-IH 478
            VSWN +I+G+ ++ F  +AL +F  M + G   D  T+   LSAC+H   +  G +  +
Sbjct: 460 VVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFY 519

Query: 479 HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAINGN 536
            +    G   +      +I +  + GR+ +A+ L K+   +P D  +W +L+    I+GN
Sbjct: 520 SMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEP-DAATWGALLGASRIHGN 578

Query: 537 ATEAIKLFEEMVMEGVAPDPVTFIGVLS 564
            TE  +   +M+ E + PD      +LS
Sbjct: 579 -TELGEKAAKMIFE-MEPDNSGMYVLLS 604



 Score =  275 bits (703), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 139/390 (35%), Positives = 238/390 (61%), Gaps = 13/390 (3%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           +F QM +++ V++N+M+S YA+NG V +A+++F++MP +N +SWN M+A Y+ N ++++A
Sbjct: 133 LFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDA 192

Query: 97  RELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNY 156
           R LF+     +L SW  M+  Y ++  L  AR +FD +P +++ + WN M++GYA+ G  
Sbjct: 193 RRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVS-WNTMISGYAQNGEL 251

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELD 216
            EA++L +  P +++ +W +M+SGY +NG +  A + F+ M E++ VSWN ++ GYV+  
Sbjct: 252 LEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCK 311

Query: 217 DLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ 276
            +D A + F+ +P QNV SW TM++GYA+NG + +AR  FD+MP R+ ++W A+IA Y Q
Sbjct: 312 RMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQ 371

Query: 277 RGQIEEAARLFIEMP---ER-NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA---- 328
            G  EEA  LF+EM    ER N  ++T+ +     IA L+  +++  ++    + +    
Sbjct: 372 SGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYV 431

Query: 329 QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----V 384
             A++  Y +   +D+A  +F+ I   +VV WN MI GYA+ G   EA+ LF  M    +
Sbjct: 432 GNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGI 491

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
             D VT   +++  +    +D   + F  M
Sbjct: 492 LPDDVTMVGVLSACSHTGLVDKGTEYFYSM 521



 Score =  236 bits (601), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 141/431 (32%), Positives = 224/431 (51%), Gaps = 50/431 (11%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  ++   ++G V+EA +IF +M  KN++++N M++AY +NGR+ DAR+LFE    
Sbjct: 142 VVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKAD 201

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
             L+SWN M+ GY+  +++ +AR +FD+M   D  SW  MI+ Y + GEL +A+ LF+  
Sbjct: 202 WELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEES 261

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P + D   W AMV+GY + G  +EA+++ D MP KN VSWN++++GY +   M  A + F
Sbjct: 262 PVR-DVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELF 320

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
           EAM  ++V SWN M+ GY +  D+  A  FF ++P+++ +SW  +++GYA++G   EA  
Sbjct: 321 EAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALH 380

Query: 255 LF-------------------------------DQMPIRNVVA--------WNAMIAAYV 275
           LF                                Q+  R V A         NA++  Y 
Sbjct: 381 LFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYC 440

Query: 276 QRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI----AAQTA 331
           + G I++A  +F  + E+  VSW TMI GY R     EA  L + M    I         
Sbjct: 441 KCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVG 500

Query: 332 MISGYVQNKRMDEANQIF-----DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-VN 385
           ++S       +D+  + F     D   T +   +  MI    + GR+D+A NL + M   
Sbjct: 501 VLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFE 560

Query: 386 KDIVTWNTMIA 396
            D  TW  ++ 
Sbjct: 561 PDAATWGALLG 571


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  563 bits (1450), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 308/813 (37%), Positives = 473/813 (58%), Gaps = 85/813 (10%)

Query: 2   KASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMI-------- 53
           K+  K+     +++F  N +I +LG+ GRVEEA ++F++M Q++ V++NSMI        
Sbjct: 158 KSGAKNKETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGK 217

Query: 54  -----------------------SAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHN 90
                                  + YAK GR+ +AR++FE M +RN+VSWN+MI+GY+ N
Sbjct: 218 VDEARLLFDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQN 277

Query: 91  DKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGY 150
             +K AR+LFD+M   ++ SW  ++T Y     + +ARELFD +P + ++  W  M++GY
Sbjct: 278 GDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPER-NSVSWMVMISGY 336

Query: 151 AKIGNYNEAKKLLDAM------PSKNI--------------------------------- 171
             I +Y EA  +   M      P ++I                                 
Sbjct: 337 VHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDV 396

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ 231
           V  +++L+ YT+NG + LA  FFE M ER+  SW  M+  + +   LD A + ++++PEQ
Sbjct: 397 VVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQ 456

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
            V +   M++ YA+ GR+ +AR +FD++   NVVAWNA+IA Y Q G ++EA  LF +MP
Sbjct: 457 TVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMP 516

Query: 292 ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTAMIS--------GYVQNKRM 342
            +N  SW  MI G+V+  +  EA  LL ++    ++ + ++  S        G V+  R+
Sbjct: 517 VKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRV 576

Query: 343 DEANQIFDKIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQI 401
             +  I  K G   +    N +I  YA+CG +++  ++FR +  KD V+WN++I+G ++ 
Sbjct: 577 IHSLAI--KTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSEN 634

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
             +DDA  +FE+M KR + VSW A+IS ++Q      AL +F+ M   G K +  T+   
Sbjct: 635 YMLDDARVVFEKMPKR-DVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSL 693

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           LSAC +L A++LG Q H L  K G+   LFVGNSLITMY KCG  ++   +F++    D+
Sbjct: 694 LSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEHDL 752

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC 581
           I+WN+++ G A NG   EAIK+FE+M +EG+ PD ++F+GVL ACSH GLVD G   F  
Sbjct: 753 ITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNS 812

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIK 641
           MT+ Y I PLV HY CM+DLL RAG L EA  +++ M +KP++ IW  LLGACR+H+N++
Sbjct: 813 MTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVE 872

Query: 642 LGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVK 701
           LG+   E+L ++   K++ Y LLSN+ A  G WD+V ++R  M+  G  K+PG SWI+VK
Sbjct: 873 LGQRVAERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVK 932

Query: 702 NQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNT 734
           N++H F++GD    +  EI + LK      R T
Sbjct: 933 NKLHCFVTGDRTHDQIEEIYSALKEYYGCFRAT 965


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 268/627 (42%), Positives = 400/627 (63%), Gaps = 2/627 (0%)

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDA 165
           PD+ +W   I+ + R G  + A  +F+ +P +  +  +NAM++GY +   ++ A+ L D 
Sbjct: 44  PDIVTWNKAISSHMRNGHCDSALRVFNSMP-RRSSVSYNAMISGYLRNAKFSLARDLFDK 102

Query: 166 MPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFF 225
           MP +++ SWN ML+GY +N  +  A K F+ M ++DVVSWN ML GY +   +D A + F
Sbjct: 103 MPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVF 162

Query: 226 QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAAR 285
            K+P +N +SW  +L+ Y  NGR+ EARRLF+      +++WN ++  YV+R  + +A +
Sbjct: 163 NKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQ 222

Query: 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
           LF  MP R+ +SW TMI GY ++  L +A+RL ++ P +++   TAM+SGYVQN  +DEA
Sbjct: 223 LFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEA 282

Query: 346 NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMD 405
            + FD++   + + +N M+ GY Q  +M  A  LF  M  ++I +WNTMI GY Q   + 
Sbjct: 283 RKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIA 342

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
            A K+F+ M  +R+ VSW A+ISG+ QN  + +AL +FV M ++G+ ++ ST +CALS C
Sbjct: 343 QARKLFDMM-PQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTC 401

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
           A +AAL+LG+Q+H   +K+G+    FVGN+L+ MY KCG    A  +F+  +  DV+SWN
Sbjct: 402 ADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWN 461

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
           ++IAGYA +G   +A+ LFE M   GV PD +T +GVLSACSH GL+D G + F  M   
Sbjct: 462 TMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRD 521

Query: 586 YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI 645
           Y ++P  +HY CMIDLL RAGRL+EA  +++ M   P A  WG LLGA R+H N +LG  
Sbjct: 522 YNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEK 581

Query: 646 AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705
           A E + ++EPQ +  Y LLSN++A +GRW +V K+R  M  +G QK  G SW+EV+N+IH
Sbjct: 582 AAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKIH 641

Query: 706 TFLSGDPKQCRTAEICNTLKTLAAQIR 732
           TF  GD        I   L+ L  ++R
Sbjct: 642 TFSVGDCFHPEKDRIYAFLEELDLKMR 668



 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 190/589 (32%), Positives = 314/589 (53%), Gaps = 77/589 (13%)

Query: 4   SLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVN 63
           S  S+  K   +   NK I+   ++G  + A+++F+ M ++++V+YN+MIS Y +N + +
Sbjct: 35  SPSSVKFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFS 94

Query: 64  DARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGE 123
            AR LF++MP+R+L SWN M+ GY+ N ++ EA +LFD M + D+ SW  M++ Y + G 
Sbjct: 95  LARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGF 154

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK 183
           +++ARE+F+ +P++ ++  WN ++A Y   G   EA++L ++  +  ++SWN ++ GY K
Sbjct: 155 VDEAREVFNKMPHR-NSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVK 213

Query: 184 NGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGY 243
              +  A + F+ M  RDV+SWN M+ GY ++ DL  A + F + P ++V +W  M+SGY
Sbjct: 214 RNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGY 273

Query: 244 ARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMID 303
            +NG + EAR+ FD+MP++N +++NAM+A YVQ  ++  A  LF  MP RN  SW TMI 
Sbjct: 274 VQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMIT 333

Query: 304 GYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI----------- 352
           GY +   + +AR+L D MP ++  +  A+ISGY QN   +EA  +F ++           
Sbjct: 334 GYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRST 393

Query: 353 --------------------------GTHDVVCW--NVMIKGYAQCGRMDEAINLFRQMV 384
                                        +  C+  N ++  Y +CG  DEA ++F  + 
Sbjct: 394 FSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIE 453

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
            KD+V+WNTMIAGYA                                ++ F   AL +F 
Sbjct: 454 EKDVVSWNTMIAGYA--------------------------------RHGFGRQALVLFE 481

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS-LITMYAKC 503
            M + G K D  T+   LSAC+H   +  G +  +   +   V       + +I +  + 
Sbjct: 482 SMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRA 541

Query: 504 GRIQNAELLFKDADPVD--VISWNSLIAGYAINGNATEAIKLFEEMVME 550
           GR++ AE L ++  P D    SW +L+    I+GN TE  +   EMV +
Sbjct: 542 GRLEEAENLMRNM-PFDPGAASWGALLGASRIHGN-TELGEKAAEMVFK 588



 Score =  242 bits (618), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 138/471 (29%), Positives = 256/471 (54%), Gaps = 13/471 (2%)

Query: 197 MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF 256
            ++ D+V+WN  +  ++     DSA + F  +P ++ VS+  M+SGY RN +   AR LF
Sbjct: 41  FKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLF 100

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
           D+MP R++ +WN M+  YV+  ++ EA +LF  MP+++ VSW  M+ GY +   +DEAR 
Sbjct: 101 DKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEARE 160

Query: 317 LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
           + ++MP++N  +   +++ YV N R+ EA ++F+     +++ WN ++ GY +   + +A
Sbjct: 161 VFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDA 220

Query: 377 INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
             LF +M  +D+++WNTMI+GYAQ+  +  A ++F E    R+  +W A++SG++QN   
Sbjct: 221 RQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNE-SPIRDVFTWTAMVSGYVQNGMV 279

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSL 496
            +A K F  M  + + + ++ LA  +     + A +L   +    I S         N++
Sbjct: 280 DEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISS--------WNTM 331

Query: 497 ITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
           IT Y + G I  A  LF      D +SW ++I+GYA NG+  EA+ +F EM  +G + + 
Sbjct: 332 ITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNR 391

Query: 557 VTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVK 616
            TF   LS C+ +  ++ G ++   + +    E        ++ +  + G  DEA ++ +
Sbjct: 392 STFSCALSTCADIAALELGKQVHGQVVKA-GFETGCFVGNALLGMYFKCGSTDEANDVFE 450

Query: 617 GMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSE--LEPQKTSCYALLS 665
           G++ K +   W T++     H   +   +  E + +  ++P + +   +LS
Sbjct: 451 GIEEK-DVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLS 500


>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
          Length = 752

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 261/497 (52%), Positives = 353/497 (71%), Gaps = 3/497 (0%)

Query: 239 MLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
           M++ Y RNG + +AR LF+ +P + N V  NAM+A Y +  Q +EA RLF  MP ++ VS
Sbjct: 1   MITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVS 60

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV 357
           W +M+ GY R  ++    +  ++M  +++ +   M+ G+V+   ++ + + F+KI   + 
Sbjct: 61  WNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNT 120

Query: 358 VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
           V W  M+ G+A+ G++ EA  LF QM  +++V WN MIA Y Q   +D+A+ +F EM   
Sbjct: 121 VSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEM-PE 179

Query: 418 RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI 477
           +N++SW  +I+G+++    LD  +  +       K D ST AC LS+CAHLAALQ+G+Q+
Sbjct: 180 KNSISWTTVINGYVRMG-KLDEARQLLNQMPYRNKPDQSTFACGLSSCAHLAALQVGKQL 238

Query: 478 HHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNA 537
           H L +KSGY  DLFV N+LITMYAKCG I +AELLFKD D  DV+SWNSLIA YA+NGN 
Sbjct: 239 HQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNG 298

Query: 538 TEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYAC 597
            EA+KLF +M +EGVAPD VTF+G+LSACSHVGL+D GLKLF+CM + Y IEPL EHYAC
Sbjct: 299 REALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYAC 358

Query: 598 MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK 657
           M+DLL RAGRL+EAF++V+GMKI  NAGIWG LLGACR+H N++L + A EKL E EP K
Sbjct: 359 MVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHK 418

Query: 658 TSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRT 717
           TS Y LLSNM AEAGRWDEV +VR  M+  GA+KQPG SWIE++N++H FLS DP   R 
Sbjct: 419 TSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQNRVHAFLSEDPAHPRA 478

Query: 718 AEICNTLKTLAAQIRNT 734
            E+C+ L++L A +RNT
Sbjct: 479 VELCHILRSLTAHMRNT 495



 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/446 (45%), Positives = 276/446 (61%), Gaps = 42/446 (9%)

Query: 114 MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS 173
           MITCYTR GEL KAR LF+LLP K +  C NAMVAGYAK   ++EA++L DAMP+K++VS
Sbjct: 1   MITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVS 60

Query: 174 WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV 233
           WNSML+GYT+NGEM L  +FFE M ERDVVSWNLM+DG+VE+ DL+S+W+FF+KIP  N 
Sbjct: 61  WNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNT 120

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           VSWVTML G+AR G++ EARRLFDQMPIRNVVAWNAMIAAYVQ   ++EA  LF+EMPE+
Sbjct: 121 VSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEK 180

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRM------DEANQ 347
           N +SWTT+I+GYVR+ KLDEAR+LL+QMPY+N   Q+    G      +       + +Q
Sbjct: 181 NSISWTTVINGYVRMGKLDEARQLLNQMPYRNKPDQSTFACGLSSCAHLAALQVGKQLHQ 240

Query: 348 IFDKIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDD 406
           +  K G   D+   N +I  YA+CG +  A  LF+ + + D+V+WN++IA YA       
Sbjct: 241 LVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYAL------ 294

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
                   G  R                   +ALK+F  M  EG   D  T    LSAC+
Sbjct: 295 -------NGNGR-------------------EALKLFHKMEVEGVAPDEVTFVGILSACS 328

Query: 467 HLAALQLGRQIHHLAIKSGYVNDLFVGNS-LITMYAKCGRIQNAELLFKDAD-PVDVISW 524
           H+  +  G ++    +++  +  L    + ++ +  + GR++ A  L +      +   W
Sbjct: 329 HVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIW 388

Query: 525 NSLIAGYAINGNATEAIKLFEEMVME 550
            +L+    I+GN  E  K   E ++E
Sbjct: 389 GALLGACRIHGN-LELAKFAAEKLLE 413



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 190/391 (48%), Gaps = 39/391 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +    K+ + +EA ++F  M  K+ V++NSM++ Y +NG +    + FE+M +R++V
Sbjct: 31  NAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVV 90

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           SWN M+ G++    +  + E F+K+  P+  SW  M+  + R G++ +AR LFD +P + 
Sbjct: 91  SWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRN 150

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
             A WNAM+A Y +  + +EA  L   MP KN +SW ++++GY + G++  A +    M 
Sbjct: 151 VVA-WNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMP 209

Query: 199 ER---DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLE 251
            R   D  ++   L     L  L    +  Q + +    + +     +++ YA+ G +  
Sbjct: 210 YRNKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISS 269

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF----IEMPERNPVSWTTMIDGYVR 307
           A  LF  +   +VV+WN++IAAY   G   EA +LF    +E    + V++  ++     
Sbjct: 270 AELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSH 329

Query: 308 IAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367
           +  +D+  +L                      K M +A  I + +  H    +  M+   
Sbjct: 330 VGLIDQGLKLF---------------------KCMVQAYNI-EPLAEH----YACMVDLL 363

Query: 368 AQCGRMDEAINLFRQM-VNKDIVTWNTMIAG 397
            + GR++EA  L R M +N +   W  ++  
Sbjct: 364 GRAGRLEEAFQLVRGMKINANAGIWGALLGA 394



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 172/336 (51%), Gaps = 30/336 (8%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  +    + G +  + + F ++   NTV++ +M+  +A+ G++ +AR+LF+QMP 
Sbjct: 89  VVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPI 148

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN+V+WN+MIA Y+ N  V EA  LF +M   +  SW  +I  Y R G+L++AR+L + +
Sbjct: 149 RNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQM 208

Query: 135 P--NKEDTACWNAMVAGYAKIGNYNEAKKL----LDAMPSKNIVSWNSMLSGYTKNGEMH 188
           P  NK D + +   ++  A +      K+L    + +  + ++   N++++ Y K G + 
Sbjct: 209 PYRNKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSIS 268

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYA 244
            A   F+ ++  DVVSWN ++  Y    +   A K F K+  + V    V++V +LS  +
Sbjct: 269 SAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACS 328

Query: 245 RNGRMLEARRLFDQMPIRNVVAWN---------AMIAAYVQRGQIEEAARLFIEMP-ERN 294
             G + +  +LF  M    V A+N          M+    + G++EEA +L   M    N
Sbjct: 329 HVGLIDQGLKLFKCM----VQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINAN 384

Query: 295 PVSWTTM-----IDGYVRIAKLDEARRLLDQMPYKN 325
              W  +     I G + +AK   A +LL+  P+K 
Sbjct: 385 AGIWGALLGACRIHGNLELAKF-AAEKLLEFEPHKT 419


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  546 bits (1408), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 260/619 (42%), Positives = 396/619 (63%), Gaps = 2/619 (0%)

Query: 115 ITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSW 174
           I+ + R G  + A  +FD +P + ++  +NAM++GY +   ++ A+ L D MP K++ SW
Sbjct: 40  ISTHMRNGHCDLALCVFDAMPLR-NSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSW 98

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
           N ML+GY +N  +  A   F++M E+DVVSWN ML GYV    +D A   F ++P +N +
Sbjct: 99  NLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSI 158

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
           SW  +L+ Y R+GR+ EARRLF+      +++ N ++  YV+R  + +A +LF ++P R+
Sbjct: 159 SWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRD 218

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
            +SW TMI GY +   L +ARRL ++ P +++   TAM+  YVQ+  +DEA ++FD++  
Sbjct: 219 LISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQ 278

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
              + +NVMI GYAQ  RMD    LF +M   +I +WN MI+GY Q   +  A  +F+ M
Sbjct: 279 KREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMM 338

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
             +R++VSW A+I+G+ QN  + +A+ + V M ++G+  + ST  CALSACA +AAL+LG
Sbjct: 339 -PQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELG 397

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
           +Q+H   +++GY     VGN+L+ MY KCG I  A  +F+     D++SWN+++AGYA +
Sbjct: 398 KQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARH 457

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEH 594
           G   +A+ +FE M+  GV PD +T +GVLSACSH GL D G + F  M + Y I P  +H
Sbjct: 458 GFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKH 517

Query: 595 YACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE 654
           YACMIDLL RAG L+EA  +++ M  +P+A  WG LLGA R+H N++LG  A E + ++E
Sbjct: 518 YACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKME 577

Query: 655 PQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQ 714
           P  +  Y LLSN++A +GRW +V K+R+ M   G QK PG SW+EV+N+IHTF  GD   
Sbjct: 578 PHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQNKIHTFTVGDCFH 637

Query: 715 CRTAEICNTLKTLAAQIRN 733
                I   L+ L  ++++
Sbjct: 638 PEKGRIYAFLEELDLKMKH 656



 Score =  355 bits (910), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 188/534 (35%), Positives = 298/534 (55%), Gaps = 45/534 (8%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           +TV     IS + +NG  + A  +F+ MP RN VS+N+MI+GYL N K   AR+LFDKM 
Sbjct: 32  HTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMP 91

Query: 105 RPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLD 164
             DLFSW LM+T Y R   L  AR LFD +P K D   WNAM++GY + G+ +EA+ + D
Sbjct: 92  HKDLFSWNLMLTGYARNRRLRDARMLFDSMPEK-DVVSWNAMLSGYVRSGHVDEARDVFD 150

Query: 165 AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKF 224
            MP KN +SWN +L+ Y ++G +  A + FE+  + +++S N ++ GYV+ + L  A + 
Sbjct: 151 RMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQL 210

Query: 225 FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA 284
           F +IP ++++SW TM+SGYA++G + +ARRLF++ P+R+V  W AM+ AYVQ G ++EA 
Sbjct: 211 FDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEAR 270

Query: 285 RLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDE 344
           R+F EMP++  +S+  MI GY +  ++D  R L ++MP+ NI +   MISGY QN  + +
Sbjct: 271 RVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQ 330

Query: 345 ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM--------------------- 383
           A  +FD +   D V W  +I GYAQ G  +EA+N+  +M                     
Sbjct: 331 ARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACAD 390

Query: 384 ------------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
                               K  +  N ++  Y +   +D+A  +F+ + + ++ VSWN 
Sbjct: 391 IAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGV-QHKDIVSWNT 449

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS- 484
           +++G+ ++ F   AL +F  M   G K D  T+   LSAC+H      G +  H   K  
Sbjct: 450 MLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDY 509

Query: 485 GYVNDLFVGNSLITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAINGN 536
           G   +      +I +  + G ++ A+ L ++   +P D  +W +L+    I+GN
Sbjct: 510 GITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEP-DAATWGALLGASRIHGN 562



 Score =  253 bits (647), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 128/414 (30%), Positives = 235/414 (56%), Gaps = 13/414 (3%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F+ N  +T   ++ R+ +A  +F  M +K+ V++N+M+S Y ++G V++AR +F++MP 
Sbjct: 95  LFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPH 154

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           +N +SWN ++A Y+ + +++EAR LF+     +L S   ++  Y ++  L  AR+LFD +
Sbjct: 155 KNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQLFDQI 214

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P + D   WN M++GYA+ G+ ++A++L +  P +++ +W +M+  Y ++G +  A + F
Sbjct: 215 PVR-DLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVF 273

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
           + M ++  +S+N+M+ GY +   +D   + F+++P  N+ SW  M+SGY +NG + +AR 
Sbjct: 274 DEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARN 333

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAK 310
           LFD MP R+ V+W A+IA Y Q G  EEA  + +EM       N  ++   +     IA 
Sbjct: 334 LFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAA 393

Query: 311 LDEARRLLDQMPY----KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG 366
           L+  +++  Q+      K      A++  Y +   +DEA  +F  +   D+V WN M+ G
Sbjct: 394 LELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAG 453

Query: 367 YAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
           YA+ G   +A+ +F  M    V  D +T   +++  +     D   + F  M K
Sbjct: 454 YARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNK 507



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/431 (28%), Positives = 211/431 (48%), Gaps = 50/431 (11%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  ++   +SG V+EA  +F +M  KN++++N +++AY ++GR+ +AR+LFE    
Sbjct: 126 VVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSD 185

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
             L+S N ++ GY+  + + +AR+LFD++   DL SW  MI+ Y + G+L +AR LF+  
Sbjct: 186 WELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEES 245

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P + D   W AMV  Y + G  +EA+++ D MP K  +S+N M++GY +   M +  + F
Sbjct: 246 PVR-DVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKRMDMGRELF 304

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
           E M   ++ SWN+M+ GY +  DL  A   F  +P+++ VSW  +++GYA+NG   EA  
Sbjct: 305 EEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMN 364

Query: 255 LFDQMPI---------------------------------------RNVVAWNAMIAAYV 275
           +  +M                                         +  +  NA++  Y 
Sbjct: 365 MLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYC 424

Query: 276 QRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TA 331
           + G I+EA  +F  +  ++ VSW TM+ GY R     +A  + + M    +         
Sbjct: 425 KCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVG 484

Query: 332 MISGYVQNKRMDEANQIFDKIG-----THDVVCWNVMIKGYAQCGRMDEAINLFRQM-VN 385
           ++S        D   + F  +      T +   +  MI    + G ++EA NL R M   
Sbjct: 485 VLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFE 544

Query: 386 KDIVTWNTMIA 396
            D  TW  ++ 
Sbjct: 545 PDAATWGALLG 555



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/440 (28%), Positives = 227/440 (51%), Gaps = 44/440 (10%)

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIE 289
           + + V     +S + RNG    A  +FD MP+RN V++NAMI+ Y++  +   A  LF +
Sbjct: 30  DPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDK 89

Query: 290 MPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF 349
           MP ++  SW  M+ GY R  +L +AR L D MP K++ +  AM+SGYV++  +DEA  +F
Sbjct: 90  MPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVF 149

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLF---------------------------RQ 382
           D++   + + WN ++  Y + GR++EA  LF                           RQ
Sbjct: 150 DRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNMLGDARQ 209

Query: 383 MVN----KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
           + +    +D+++WNTMI+GYAQ   +  A ++FEE    R+  +W A++  ++Q+    +
Sbjct: 210 LFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEE-SPVRDVFTWTAMVYAYVQDGMLDE 268

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
           A ++F  M Q+ + + +  +A      A    + +GR++     +     ++   N +I+
Sbjct: 269 ARRVFDEMPQKREMSYNVMIA----GYAQYKRMDMGREL----FEEMPFPNIGSWNIMIS 320

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
            Y + G +  A  LF      D +SW ++IAGYA NG   EA+ +  EM  +G + +  T
Sbjct: 321 GYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRST 380

Query: 559 FIGVLSACSHVGLVDGGLKLF-ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKG 617
           F   LSAC+ +  ++ G ++  + +   Y    LV +   ++ +  + G +DEA+++ +G
Sbjct: 381 FCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGN--ALVGMYCKCGCIDEAYDVFQG 438

Query: 618 MKIKPNAGIWGTLLGACRMH 637
           ++ K     W T+L     H
Sbjct: 439 VQHKDIVS-WNTMLAGYARH 457


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 255/618 (41%), Positives = 381/618 (61%), Gaps = 2/618 (0%)

Query: 115 ITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSW 174
           IT + R G +  A  LF  +P +  T+ +N M+AGYA  G   +A     ++P  +  S+
Sbjct: 114 ITAHMRAGRVPDAERLFAAMPRR-STSTYNTMLAGYAANGRLPQALSFFRSIPRPDSFSY 172

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
           N++L     +  +      F+ M  +D VS+N+M+  +     +  A  +F   PE++ V
Sbjct: 173 NTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAV 232

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
           SW  ML+ Y RNGR+ EAR LFD     + ++WNA++A YVQR QIEEA ++F +MP+R+
Sbjct: 233 SWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRD 292

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
            VSW TM+ GY R   + EARRL D  P +++   TA++SGY QN  ++EA ++FD +  
Sbjct: 293 VVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPD 352

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            + V WN M+  Y Q   M+EA  LF  M  +++ +WNTM+ GYAQ   +D+A  IF  M
Sbjct: 353 KNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMM 412

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
             +++ VSW A+++ + Q  F  + L++F  M + G+  + S  AC LS CA +AAL+ G
Sbjct: 413 -PQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECG 471

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
            Q+H   IK+GY    FVGN+L+ MY KCG ++ A   F++ +  DV+SWN++IAGYA +
Sbjct: 472 MQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARH 531

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEH 594
           G   EA+++F+ M      PD +T +GVL+ACSH GLV+ G+  F  M   + +    EH
Sbjct: 532 GFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEH 591

Query: 595 YACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE 654
           Y CMIDLL RAGRLDEA  ++K M  +P++ +WG LLGA R+H+N +LGR A EK+ ELE
Sbjct: 592 YTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELE 651

Query: 655 PQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQ 714
           P+    Y LLSN++A +G+W +V+K+R  M   G +K PG SWIEV+N++HTF  GD   
Sbjct: 652 PENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSVH 711

Query: 715 CRTAEICNTLKTLAAQIR 732
               +I   L+ L  +++
Sbjct: 712 PEREDIYAFLEDLDIRMK 729



 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 188/577 (32%), Positives = 294/577 (50%), Gaps = 80/577 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V  +N+ IT   ++GRV +A ++F+ M +++T TYN+M++ YA NGR+  A   F  +P+
Sbjct: 107 VIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPR 166

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
            +  S+N+++     +  + + R LFD+M   D  S+ +MI+ +   G +  AR  FDL 
Sbjct: 167 PDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLA 226

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P K D   WN M+A Y + G   EA++L D+    + +SWN++++GY +  ++  A K F
Sbjct: 227 PEK-DAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMF 285

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
             M +RDVVSWN M+ GY    D+  A + F   P ++V +W  ++SGYA+NG + EA+R
Sbjct: 286 NKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKR 345

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
           +FD MP +N V+WNAM+AAYVQR  +EEA  LF  MP RN  SW TM+ GY +   LDEA
Sbjct: 346 VFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEA 405

Query: 315 RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT-------------------- 354
           R +   MP K+  +  AM++ Y Q    +E  Q+F ++G                     
Sbjct: 406 RAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADI 465

Query: 355 -----------------HDVVCW--NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMI 395
                            + V C+  N ++  Y +CG M+EA + F +M  +D+V+WNTMI
Sbjct: 466 AALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMI 525

Query: 396 AGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADH 455
           AGYA                                ++ F  +AL++F  M +   K D 
Sbjct: 526 AGYA--------------------------------RHGFGKEALEVFDTMRKTSTKPDD 553

Query: 456 STLACALSACAHLAALQLG-RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
            TL   L+AC+H   ++ G    + +    G          +I +  + GR+  A  L K
Sbjct: 554 ITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMK 613

Query: 515 DA--DPVDVISWNSLIAGYAINGNA----TEAIKLFE 545
           D   +P D   W +L+    I+ N+      A K+FE
Sbjct: 614 DMPFEP-DSTMWGALLGASRIHRNSELGRNAAEKIFE 649


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 254/591 (42%), Positives = 375/591 (63%), Gaps = 2/591 (0%)

Query: 143 WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV 202
           +N+ +A YA+IG    A+++ D MP K IVSWNSM++GY +N     A   F+ M ER+ 
Sbjct: 19  YNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNT 78

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR 262
           VSWN ++ GYV+   +  A K F  +PE+NVVSW  M+ GY + G + EA  LF QMP +
Sbjct: 79  VSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEK 138

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
           NVV+W  M+   +Q  +I+EA  LF  MP ++ V+ T MI GY +  +L EAR L D+MP
Sbjct: 139 NVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMP 198

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
            +N+ + T MISGYVQN ++D A ++F+ +   + V W  M+ GY Q GR++EA  LF  
Sbjct: 199 RRNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYTQGGRIEEASELFDA 258

Query: 383 MVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI 442
           M  K +V  N MI G+ Q  ++  A ++F+++ + ++  +W+A+I  + +  F ++AL +
Sbjct: 259 MPVKAVVACNAMILGFGQNGEVAKARQVFDQI-REKDDGTWSAMIKVYERKGFEVEALNL 317

Query: 443 FVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
           F LM +EG +++  +L   LS CA LA+L  GRQ+H   +KS + +D+FV + LITMY K
Sbjct: 318 FALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVK 377

Query: 503 CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
           CG +  A  +F    P D++ WNS+I GYA +G   EA+++F EM   G+A D VTF+GV
Sbjct: 378 CGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGV 437

Query: 563 LSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKP 622
           LSACS+ G V  GL++FE M   Y +EP  EHYACM+DLL RAG +++A ++++ M ++ 
Sbjct: 438 LSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEA 497

Query: 623 NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRV 682
           +A IWG LLGACR H N+ L  +A +KL +LEP+    Y LLSN++A  GRW +V ++R 
Sbjct: 498 DAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYASKGRWGDVAELRR 557

Query: 683 SMEGSGAQKQPGCSWIEVKNQIHTFLSG-DPKQCRTAEICNTLKTLAAQIR 732
           +M      K PGCSWIEV+ ++H F  G   K    + I   L+ L   +R
Sbjct: 558 NMRVKKVSKSPGCSWIEVEKRVHMFTGGVSTKHPELSSIMKMLEKLDGMLR 608



 Score =  292 bits (748), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 167/523 (31%), Positives = 279/523 (53%), Gaps = 45/523 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N +I +  + G++E A ++F +M  K  V++NSM++ Y +N R  +AR LF++MP+RN V
Sbjct: 20  NSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNTV 79

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           SWN +I+GY+ N  V EAR+ FD M   ++ SW  M+  Y ++G + +A  LF  +P K 
Sbjct: 80  SWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEK- 138

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           +   W  M+ G  ++   +EA+ L D MP K++V+  +M+SGY + G +  A + F+ M 
Sbjct: 139 NVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMP 198

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
            R+V+SW  M+ GYV+   +D A K F+ +PE+N VSW  ML GY + GR+ EA  LFD 
Sbjct: 199 RRNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYTQGGRIEEASELFDA 258

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
           MP++ VVA NAMI  + Q G++ +A ++F ++ E++  +W+ MI  Y R     EA  L 
Sbjct: 259 MPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLF 318

Query: 319 DQMPYK----NIAAQTAMISGYVQNKRMDEANQIFDKIGT----HDVVCWNVMIKGYAQC 370
             M  +    N  +  +++S       +D   Q+  ++       DV   +V+I  Y +C
Sbjct: 319 ALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKC 378

Query: 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
           G + +A  +F +   KDIV WN++I GYAQ   +++A+++F E                 
Sbjct: 379 GDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHE----------------- 421

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
                          M   G   D  T    LSAC++   ++ G +I   ++KS Y+ + 
Sbjct: 422 ---------------MCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFE-SMKSKYLVEP 465

Query: 491 FVGN--SLITMYAKCGRIQNA-ELLFKDADPVDVISWNSLIAG 530
              +   ++ +  + G + +A +L+ K     D I W +L+  
Sbjct: 466 KTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGA 508



 Score =  262 bits (669), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 141/412 (34%), Positives = 243/412 (58%), Gaps = 13/412 (3%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           + + N  +    ++ R  EA  +F +M ++NTV++N +IS Y KN  V++ARK F+ MP+
Sbjct: 47  IVSWNSMVAGYFQNNRPREARYLFDKMPERNTVSWNGLISGYVKNRMVSEARKAFDTMPE 106

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN+VSW +M+ GY+    V EA  LF +M   ++ SW +M+    +   +++AR LFD++
Sbjct: 107 RNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVVSWTVMLGGLIQVRRIDEARGLFDIM 166

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P K+  A  N M++GY + G   EA++L D MP +N++SW +M+SGY +NG++ +A K F
Sbjct: 167 PVKDVVARTN-MISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLF 225

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
           E M E++ VSW  ML GY +   ++ A + F  +P + VV+   M+ G+ +NG + +AR+
Sbjct: 226 EVMPEKNEVSWTAMLMGYTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQ 285

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAK 310
           +FDQ+  ++   W+AMI  Y ++G   EA  LF  M     + N  S  +++     +A 
Sbjct: 286 VFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLAS 345

Query: 311 LDEARR----LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG 366
           LD  R+    L+      ++   + +I+ YV+   + +A QIFD+    D+V WN +I G
Sbjct: 346 LDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITG 405

Query: 367 YAQCGRMDEAINLFRQMVNK----DIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           YAQ G ++EA+ +F +M +     D VT+  +++  +   ++ + ++IFE M
Sbjct: 406 YAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESM 457



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 145/303 (47%), Gaps = 38/303 (12%)

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEE 413
           T   + +N  I  YA+ G+++ A  +F +M +K IV+WN+M+AGY Q  +  +A  +F++
Sbjct: 13  TSVAIAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDK 72

Query: 414 MGKRRNTVSWNALISGFLQNEFHLDALKIFVLM---------------TQEGKKADHSTL 458
           M   RNTVSWN LISG+++N    +A K F  M                QEG  ++  TL
Sbjct: 73  M-PERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETL 131

Query: 459 ------ACALSACAHLAALQLGRQIHHLA--IKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
                    +S    L  L   R+I           V D+    ++I+ Y + GR+  A 
Sbjct: 132 FWQMPEKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEAR 191

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
            LF +    +VISW ++I+GY  NG    A KLFE M  +    + V++  +L   +  G
Sbjct: 192 ELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEK----NEVSWTAMLMGYTQGG 247

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYAC--MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWG 628
            ++   +LF+ M       P+    AC  MI    + G + +A ++   ++ K + G W 
Sbjct: 248 RIEEASELFDAM-------PVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDD-GTWS 299

Query: 629 TLL 631
            ++
Sbjct: 300 AMI 302



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 13/168 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S VF  +  IT   K G + +A +IF + S K+ V +NS+I+ YA++G V +A ++F +M
Sbjct: 363 SDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEM 422

Query: 73  PQRNLVSWNSMIAGYL----HNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGE 123
               + +      G L    +  KVKE  E+F+ M       P    +A M+    R G 
Sbjct: 423 CSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGL 482

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYN----EAKKLLDAMP 167
           +  A +L   +P + D   W A++       N N     AKKLL   P
Sbjct: 483 VNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEP 530


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 249/606 (41%), Positives = 377/606 (62%), Gaps = 2/606 (0%)

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDA 165
           P++      IT + R G +  A  LF  +P +  T+ +NAM+AGY+  G    A  L  A
Sbjct: 36  PEVIRSNKAITAHMRAGRVADAERLFAAMP-RRSTSTYNAMLAGYSANGRLPLAASLFRA 94

Query: 166 MPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFF 225
           +P  +  S+N++L     +  +  A   F+ M  RD V++N+M+  +     +  A  +F
Sbjct: 95  IPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYF 154

Query: 226 QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAAR 285
              PE++ VSW  ML+ Y RNGR+ EAR LF+     +V++WNA+++ YVQ G++ EA  
Sbjct: 155 DLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARE 214

Query: 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
           LF  MP R+ VSW  M+ GY R   + EARRL D  P +++   TA++SGY QN  ++EA
Sbjct: 215 LFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEA 274

Query: 346 NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMD 405
            ++FD +   + V WN M+  Y Q   MDEA  LF  M  +++ +WNTM+ GYAQ   ++
Sbjct: 275 RRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLE 334

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
           +A  +F+ M  +++ VSW A+++ + Q     + L++F+ M + G+  + S  AC LS C
Sbjct: 335 EAKAVFDTM-PQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTC 393

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
           A +AAL+ G Q+H   I++GY    FVGN+L+ MY KCG +++A   F++ +  DV+SWN
Sbjct: 394 ADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWN 453

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
           ++IAGYA +G   EA+++F+ M      PD +T +GVL+ACSH GLV+ G+  F  M   
Sbjct: 454 TMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHD 513

Query: 586 YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI 645
           + +    EHY CMIDLL RAGRL EA +++K M  +P++ +WG LLGA R+H+N +LGR 
Sbjct: 514 FGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRS 573

Query: 646 AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705
           A EK+ ELEP+    Y LLSN++A +G+W +  K+RV ME  G +K PG SWIEV+N++H
Sbjct: 574 AAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVH 633

Query: 706 TFLSGD 711
           TF +GD
Sbjct: 634 TFSAGD 639



 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 192/580 (33%), Positives = 299/580 (51%), Gaps = 86/580 (14%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V   NK IT   ++GRV +A ++F+ M +++T TYN+M++ Y+ NGR+  A  LF  +P+
Sbjct: 38  VIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPR 97

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
            +  S+N+++     +  + +AR LFD+M   D  ++ +MI+ +   G +  AR  FDL 
Sbjct: 98  PDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLA 157

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P K D   WN M+A Y + G   EA+ L ++    +++SWN+++SGY + G+M  A + F
Sbjct: 158 PEK-DAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELF 216

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
           + M  RDVVSWN+M+ GY    D+  A + F   P ++V +W  ++SGYA+NG + EARR
Sbjct: 217 DRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARR 276

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
           +FD MP RN V+WNAM+AAY+QR  ++EA  LF  MP RN  SW TM+ GY +   L+EA
Sbjct: 277 VFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEA 336

Query: 315 RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT-------------------- 354
           + + D MP K+  +  AM++ Y Q    +E  Q+F ++G                     
Sbjct: 337 KAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADI 396

Query: 355 -----------------HDVVCW--NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMI 395
                            + V C+  N ++  Y +CG M++A N F +M  +D+V+WNTMI
Sbjct: 397 AALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMI 456

Query: 396 AGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADH 455
           AGYA                                ++ F  +AL+IF +M     K D 
Sbjct: 457 AGYA--------------------------------RHGFGKEALEIFDMMRTTSTKPDD 484

Query: 456 STLACALSACAHLAALQLG----RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL 511
            TL   L+AC+H   ++ G      +HH     G          +I +  + GR+  A  
Sbjct: 485 ITLVGVLAACSHSGLVEKGISYFYSMHH---DFGVTAKPEHYTCMIDLLGRAGRLAEAHD 541

Query: 512 LFKDA--DPVDVISWNSLIAGYAINGNA----TEAIKLFE 545
           L KD   +P D   W +L+    I+ N     + A K+FE
Sbjct: 542 LMKDMPFEP-DSTMWGALLGASRIHRNPELGRSAAEKIFE 580



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 140/458 (30%), Positives = 233/458 (50%), Gaps = 29/458 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +    ++GRVEEA  +F+  ++ + +++N+++S Y + G++++AR+LF++MP R++V
Sbjct: 166 NGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVV 225

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           SWN M++GY     + EAR LFD     D+F+W  +++ Y + G LE+AR +FD +P + 
Sbjct: 226 SWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER- 284

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           +   WNAMVA Y +    +EAK+L + MP +N+ SWN+ML+GY + G +  A   F+ M 
Sbjct: 285 NAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP 344

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPE----QNVVSWVTMLSGYA-----RNGRM 249
           ++D VSW  ML  Y +    +   + F ++       N  ++  +LS  A       G  
Sbjct: 345 QKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQ 404

Query: 250 LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIA 309
           L  R +     +   V  NA++A Y + G +E+A   F EM ER+ VSW TMI GY R  
Sbjct: 405 LHGRLIRAGYGVGCFVG-NALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHG 463

Query: 310 KLDEARRLLDQMPYKNIAAQTAMISGYV---QNKRMDEANQIFDKIGTHDVVC------W 360
              EA  + D M   +       + G +    +  + E    +     HD         +
Sbjct: 464 FGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHY 523

Query: 361 NVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAGYAQIRQMDD-----AVKIFEEM 414
             MI    + GR+ EA +L + M    D   W  ++ G ++I +  +     A KIFE  
Sbjct: 524 TCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALL-GASRIHRNPELGRSAAEKIFEL- 581

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
            +  N   +  L + +  +    DA K+ V+M + G K
Sbjct: 582 -EPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVK 618



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 164/361 (45%), Gaps = 80/361 (22%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G  V + N  ++   + G + EA ++F     ++  T+ +++S YA+NG + +AR++F+ 
Sbjct: 221 GRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDA 280

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           MP+RN VSWN+M+A Y+    + EA+ELF+ M   ++ SW  M+T Y + G LE+A+ +F
Sbjct: 281 MPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVF 340

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM-----------------PSKNIVSW 174
           D +P K D   W AM+A Y++ G   E  +L   M                    +I + 
Sbjct: 341 DTMPQK-DAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAAL 399

Query: 175 ----------------------NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY 212
                                 N++L+ Y K G M  A   FE MEERDVVSWN      
Sbjct: 400 ECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWN------ 453

Query: 213 VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWN 268
                                    TM++GYAR+G   EA  +FD M   +     +   
Sbjct: 454 -------------------------TMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLV 488

Query: 269 AMIAAYVQRGQIEEAARLFIEMPE-----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
            ++AA    G +E+    F  M         P  +T MID   R  +L EA  L+  MP+
Sbjct: 489 GVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPF 548

Query: 324 K 324
           +
Sbjct: 549 E 549


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 249/606 (41%), Positives = 377/606 (62%), Gaps = 2/606 (0%)

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDA 165
           P++      IT + R G +  A  LF  +P +  T+ +NAM+AGY+  G    A  L  A
Sbjct: 36  PEVIRSNKAITAHMRAGRVADAERLFAAMP-RRSTSTYNAMLAGYSANGRLPLAASLFRA 94

Query: 166 MPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFF 225
           +P  +  S+N++L     +  +  A   F+ M  RD V++N+M+  +     +  A  +F
Sbjct: 95  IPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYF 154

Query: 226 QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAAR 285
              PE++ VSW  ML+ Y RNGR+ EAR LF+     +V++WNA+++ YVQ G++ EA  
Sbjct: 155 DLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARE 214

Query: 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
           LF  MP R+ VSW  M+ GY R   + EARRL D  P +++   TA++SGY QN  ++EA
Sbjct: 215 LFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEA 274

Query: 346 NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMD 405
            ++FD +   + V WN M+  Y Q   MDEA  LF  M  +++ +WNTM+ GYAQ   ++
Sbjct: 275 RRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLE 334

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
           +A  +F+ M  +++ VSW A+++ + Q     + L++F+ M + G+  + S  AC LS C
Sbjct: 335 EAKAVFDTM-PQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTC 393

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
           A +AAL+ G Q+H   I++GY    FVGN+L+ MY KCG +++A   F++ +  DV+SWN
Sbjct: 394 ADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWN 453

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
           ++IAGYA +G   EA+++F+ M      PD +T +GVL+ACSH GLV+ G+  F  M   
Sbjct: 454 TMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHD 513

Query: 586 YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI 645
           + +    EHY CMIDLL RAGRL EA +++K M  +P++ +WG LLGA R+H+N +LGR 
Sbjct: 514 FGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRS 573

Query: 646 AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705
           A EK+ ELEP+    Y LLSN++A +G+W +  K+RV ME  G +K PG SWIEV+N++H
Sbjct: 574 AAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVH 633

Query: 706 TFLSGD 711
           TF +GD
Sbjct: 634 TFSAGD 639



 Score =  325 bits (833), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 192/580 (33%), Positives = 299/580 (51%), Gaps = 86/580 (14%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V   NK IT   ++GRV +A ++F+ M +++T TYN+M++ Y+ NGR+  A  LF  +P+
Sbjct: 38  VIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPR 97

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
            +  S+N+++     +  + +AR LFD+M   D  ++ +MI+ +   G +  AR  FDL 
Sbjct: 98  PDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLA 157

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P K D   WN M+A Y + G   EA+ L ++    +++SWN+++SGY + G+M  A + F
Sbjct: 158 PEK-DAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELF 216

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
           + M  RDVVSWN+M+ GY    D+  A + F   P ++V +W  ++SGYA+NG + EARR
Sbjct: 217 DRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARR 276

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
           +FD MP RN V+WNAM+AAY+QR  ++EA  LF  MP RN  SW TM+ GY +   L+EA
Sbjct: 277 VFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEA 336

Query: 315 RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT-------------------- 354
           + + D MP K+  +  AM++ Y Q    +E  Q+F ++G                     
Sbjct: 337 KAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADI 396

Query: 355 -----------------HDVVCW--NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMI 395
                            + V C+  N ++  Y +CG M++A N F +M  +D+V+WNTMI
Sbjct: 397 AALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMI 456

Query: 396 AGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADH 455
           AGYA                                ++ F  +AL+IF +M     K D 
Sbjct: 457 AGYA--------------------------------RHGFGKEALEIFDMMRTTSTKPDD 484

Query: 456 STLACALSACAHLAALQLG----RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL 511
            TL   L+AC+H   ++ G      +HH     G          +I +  + GR+  A  
Sbjct: 485 ITLVGVLAACSHSGLVEKGISYFYSMHH---DFGVTAKPEHYTCMIDLLGRAGRLAEAHD 541

Query: 512 LFKDA--DPVDVISWNSLIAGYAINGNA----TEAIKLFE 545
           L KD   +P D   W +L+    I+ N     + A K+FE
Sbjct: 542 LMKDMPFEP-DSTMWGALLGASRIHRNPELGRSAAEKIFE 580



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 140/458 (30%), Positives = 233/458 (50%), Gaps = 29/458 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +    ++GRVEEA  +F+  ++ + +++N+++S Y + G++++AR+LF++MP R++V
Sbjct: 166 NGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVV 225

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           SWN M++GY     + EAR LFD     D+F+W  +++ Y + G LE+AR +FD +P + 
Sbjct: 226 SWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER- 284

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           +   WNAMVA Y +    +EAK+L + MP +N+ SWN+ML+GY + G +  A   F+ M 
Sbjct: 285 NAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP 344

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPE----QNVVSWVTMLSGYA-----RNGRM 249
           ++D VSW  ML  Y +    +   + F ++       N  ++  +LS  A       G  
Sbjct: 345 QKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQ 404

Query: 250 LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIA 309
           L  R +     +   V  NA++A Y + G +E+A   F EM ER+ VSW TMI GY R  
Sbjct: 405 LHGRLIRAGYGVGCFVG-NALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHG 463

Query: 310 KLDEARRLLDQMPYKNIAAQTAMISGYV---QNKRMDEANQIFDKIGTHDVVC------W 360
              EA  + D M   +       + G +    +  + E    +     HD         +
Sbjct: 464 FGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHY 523

Query: 361 NVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAGYAQIRQMDD-----AVKIFEEM 414
             MI    + GR+ EA +L + M    D   W  ++ G ++I +  +     A KIFE  
Sbjct: 524 TCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALL-GASRIHRNPELGRSAAEKIFEL- 581

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
            +  N   +  L + +  +    DA K+ V+M + G K
Sbjct: 582 -EPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVK 618



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 162/361 (44%), Gaps = 80/361 (22%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G  V + N  ++   + G + EA ++F     ++  T+ +++S YA+NG + +AR++F+ 
Sbjct: 221 GRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDA 280

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           MP+RN VSWN+M+A Y+    + EA+ELF+ M   ++ SW  M+T Y + G LE+A+ +F
Sbjct: 281 MPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVF 340

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEA-------------------------------- 159
           D +P K D   W AM+A Y++ G   E                                 
Sbjct: 341 DTMPQK-DAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAAL 399

Query: 160 -------KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY 212
                   +L+ A         N++L+ Y K G M  A   FE MEERDVVSWN      
Sbjct: 400 ECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWN------ 453

Query: 213 VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWN 268
                                    TM++GYAR+G   EA  +FD M   +     +   
Sbjct: 454 -------------------------TMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLV 488

Query: 269 AMIAAYVQRGQIEEAARLFIEMPE-----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
            ++AA    G +E+    F  M         P  +T MID   R  +L EA  L+  MP+
Sbjct: 489 GVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPF 548

Query: 324 K 324
           +
Sbjct: 549 E 549


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 259/600 (43%), Positives = 365/600 (60%), Gaps = 33/600 (5%)

Query: 115 ITCYTRKGELEKARELFDLLPNKEDT-ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS 173
           I CY R G+L+ AR++FD  P    T + WNAMVA Y +     EA  L + MP +N VS
Sbjct: 29  IACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNTVS 88

Query: 174 WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV 233
           WN ++SG+ KNG +  A + F+ M +R+VVSW  M+ GYV   D+  A + F  +P +NV
Sbjct: 89  WNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNV 148

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           VSW  ML G  + GR+ +AR+LFD MP ++VVA   MI  Y + G+++EA  LF EMP+R
Sbjct: 149 VSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKR 208

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
           N V+WT M+ GY R  K+D AR+L + MP +N  + TAM+ GY  + RM EA+ +FD + 
Sbjct: 209 NVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMREASSLFDAMP 268

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEE 413
              VV  N MI G+   G +D+A  +F+ M  +D  TW+ MI             K++E 
Sbjct: 269 VKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMI-------------KVYER 315

Query: 414 MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQL 473
            G                   + L+AL +F  M +EG   +  +L   LS C  LA+L  
Sbjct: 316 KG-------------------YELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDH 356

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           G+Q+H   ++S +  DL+V + LITMY KCG +  A+ +F      DV+ WNS+I GY+ 
Sbjct: 357 GKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQ 416

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVE 593
           +G   EA+ +F +M   GV PD VTFIGVLSACS+ G V  GL+LFE M   Y +EP +E
Sbjct: 417 HGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIE 476

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653
           HYAC++DLL RA +++EA ++V+ M ++P+A +WG LLGACR H  + L  +AVEKL++L
Sbjct: 477 HYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLDLAEVAVEKLAQL 536

Query: 654 EPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPK 713
           EP+    Y LLSNM+A  GRW +VE +R  ++     K PGCSWIEV+ ++H F  GD K
Sbjct: 537 EPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSVTKLPGCSWIEVEKKVHMFTGGDSK 596



 Score =  267 bits (682), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 143/394 (36%), Positives = 232/394 (58%), Gaps = 13/394 (3%)

Query: 33  EAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDK 92
           EA+ +F +M Q+NTV++N +IS + KNG +++AR++F+ MP RN+VSW SM+ GY+ N  
Sbjct: 73  EALLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGD 132

Query: 93  VKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAK 152
           V EA  LF  M   ++ SW +M+    ++G ++ AR+LFD++P K+  A  N M+ GY +
Sbjct: 133 VAEAERLFWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTN-MIGGYCE 191

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY 212
            G  +EA+ L D MP +N+V+W +M+SGY +NG++ +A K FE M ER+ VSW  ML GY
Sbjct: 192 EGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGY 251

Query: 213 VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
                +  A   F  +P + VV    M+ G+  NG + +ARR+F  M  R+   W+AMI 
Sbjct: 252 THSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIK 311

Query: 273 AYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPY----K 324
            Y ++G   EA  LF  M       N  S  +++   V +A LD  +++  Q+      +
Sbjct: 312 VYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQ 371

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM- 383
           ++   + +I+ YV+   +  A Q+F++    DVV WN MI GY+Q G  +EA+N+F  M 
Sbjct: 372 DLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMC 431

Query: 384 ---VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
              V  D VT+  +++  +   ++ + +++FE M
Sbjct: 432 SSGVPPDDVTFIGVLSACSYSGKVKEGLELFETM 465



 Score =  265 bits (676), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 139/403 (34%), Positives = 230/403 (57%), Gaps = 11/403 (2%)

Query: 22  ITQLGKSGRVEEAIKIFSQ--MSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVS 79
           I    ++G+++ A K+F +  +  +   ++N+M++AY +  +  +A  LFE+MPQRN VS
Sbjct: 29  IACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNTVS 88

Query: 80  WNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKED 139
           WN +I+G++ N  + EAR +FD M   ++ SW  M+  Y R G++ +A  LF  +P+K +
Sbjct: 89  WNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHK-N 147

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE 199
              W  M+ G  + G  ++A+KL D MP K++V+  +M+ GY + G +  A   F+ M +
Sbjct: 148 VVSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPK 207

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM 259
           R+VV+W  M+ GY     +D A K F+ +PE+N VSW  ML GY  +GRM EA  LFD M
Sbjct: 208 RNVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMREASSLFDAM 267

Query: 260 PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLD 319
           P++ VV  N MI  +   G++++A R+F  M ER+  +W+ MI  Y R     EA  L  
Sbjct: 268 PVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFR 327

Query: 320 QMPYK----NIAAQTAMISGYVQNKRMDEANQIFDKI----GTHDVVCWNVMIKGYAQCG 371
           +M  +    N  +  +++S  V    +D   Q+  ++       D+   +V+I  Y +CG
Sbjct: 328 RMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCG 387

Query: 372 RMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            +  A  +F +   KD+V WN+MI GY+Q    ++A+ +F +M
Sbjct: 388 NLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDM 430


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 244/590 (41%), Positives = 377/590 (63%), Gaps = 2/590 (0%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N+++  Y+++G   +A+ + D M  KNI+SWNS+++GY +N     A   F+ M ER+ +
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTI 161

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRN 263
           SWN ++ GY+    ++ A + F ++PE+NVVSW  M+ GY + G + EA  LF QMP +N
Sbjct: 162 SWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKN 221

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
           VV+W  M+   +Q G+I+EA RLF  MPE++ V+ T MI GY ++ +L EAR L D+MP 
Sbjct: 222 VVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPR 281

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
           +N+ + T MI+GYVQN+++D A ++F+ +   + V W  M+KGY  CGR+DEA  LF  M
Sbjct: 282 RNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAM 341

Query: 384 VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
             K +V  N MI  + Q  ++  A ++F++M + ++  +W+A+I  + +    LDAL++F
Sbjct: 342 PIKSVVACNAMILCFGQNGEVPKARQVFDQM-REKDEGTWSAMIKVYERKGLELDALELF 400

Query: 444 VLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
            +M +EG + +  +L   LS CA LA L  GR+IH   ++S +  D++V + L++MY KC
Sbjct: 401 RMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKC 460

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
           G +  A+ +F      DV+ WNS+I GYA +G   EA+++F +M   G+ PD VTF+GVL
Sbjct: 461 GNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVL 520

Query: 564 SACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPN 623
           SACS+ G V  GL++F  M   Y +E  +EHYACM+DLL RAG+L+EA ++++ M ++ +
Sbjct: 521 SACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEAD 580

Query: 624 AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVS 683
           A IWG LLGACR H  + L  +A +KL  LEP+    + LLSN++A  GRWD+V ++R +
Sbjct: 581 AIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRN 640

Query: 684 MEGSGAQKQPGCSWIEVKNQIHTFLSGDPK-QCRTAEICNTLKTLAAQIR 732
           M      K PGCSWI V+ ++H F  GD       +EI   L+ L+  +R
Sbjct: 641 MRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLR 690



 Score =  281 bits (719), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 183/622 (29%), Positives = 316/622 (50%), Gaps = 90/622 (14%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           +++ ++N  IT+  + G++E+A  +F +M  KN +++NS+++ Y +N R  +A+ +F++M
Sbjct: 96  NFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM 155

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD 132
            +RN +SWN +++GY++N  + EARE+FD+M   ++ SW  M+  Y ++G + +A  LF 
Sbjct: 156 SERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFW 215

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
            +P K +   W  M+ G  + G  +EA +L D MP K++V+  +M+ GY + G +  A  
Sbjct: 216 QMPEK-NVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARM 274

Query: 193 FFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA 252
            F+ M  R+VVSW  M+ GYV+   +D A K F+ +PE+N VSW  ML GY   GR+ EA
Sbjct: 275 LFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEA 334

Query: 253 RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLD 312
             LF+ MPI++VVA NAMI  + Q G++ +A ++F +M E++  +W+ MI  Y R     
Sbjct: 335 SELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLEL 394

Query: 313 EARRLLDQMPYK----NIAAQTAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMI 364
           +A  L   M  +    N  +  +++S       +D   +I  ++       DV   +V++
Sbjct: 395 DALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLL 454

Query: 365 KGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
             Y +CG + +A  +F +   KD+V WN++I GYA                         
Sbjct: 455 SMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYA------------------------- 489

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
                  Q+   ++AL++F  M   G   D  T    LSAC++   ++ G +I       
Sbjct: 490 -------QHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIF------ 536

Query: 485 GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLF 544
                    NS+ T Y    +I++   +      VD++       G A  G   EA+ L 
Sbjct: 537 ---------NSMETKYQVEQKIEHYACM------VDLL-------GRA--GKLNEAMDLI 572

Query: 545 EEMVMEGVAPDPVTFIGVLSAC-SHVGLVDGGLKLFECMTEVYAIEPLVEH------YAC 597
           E+M ME    D + +  +L AC +H+ L          + EV A + LV        +  
Sbjct: 573 EKMPMEA---DAIIWGALLGACRTHMKLD---------LAEVAAKKLLVLEPKNAGPFIL 620

Query: 598 MIDLLSRAGRLDEAFEMVKGMK 619
           + ++ +  GR D+  E+ + M+
Sbjct: 621 LSNIYASQGRWDDVAELRRNMR 642



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 87/191 (45%), Gaps = 12/191 (6%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K G + +A ++F + + K+ V +NS+I+ YA++G   +A ++F  M    ++  +    G
Sbjct: 459 KCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVG 518

Query: 87  YL----HNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
            L    +   VK+  E+F+ M         +  +A M+    R G+L +A +L + +P +
Sbjct: 519 VLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPME 578

Query: 138 EDTACWNAMVAG---YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
            D   W A++     + K+     A K L  +  KN   +  + + Y   G     ++  
Sbjct: 579 ADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELR 638

Query: 195 EAMEERDVVSW 205
             M +R V  +
Sbjct: 639 RNMRDRRVSKY 649


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 248/606 (40%), Positives = 376/606 (62%), Gaps = 2/606 (0%)

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDA 165
           P++      IT + R G +  A  LF  +P +  T+ +NAM+AGY+  G    A  L  A
Sbjct: 36  PEVIRSNKAITAHMRAGRVADAERLFAAMP-RRSTSTYNAMLAGYSANGRLPLAASLFRA 94

Query: 166 MPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFF 225
           +P  +  S+N++L     +  +  A   F+ M  RD V++N+M+  +     +  A  +F
Sbjct: 95  IPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYF 154

Query: 226 QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAAR 285
              PE++ VSW  ML+ Y RNGR+ EAR LF+     + ++WNA+++ YVQ G++ EA  
Sbjct: 155 DLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARE 214

Query: 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
           LF  MP R+ VSW  M+ GY R   + EARRL D  P +++   TA++SGY QN  ++EA
Sbjct: 215 LFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEA 274

Query: 346 NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMD 405
            ++FD +   + V WN M+  Y Q   MDEA  LF  M  +++ +WNTM+ GYAQ   ++
Sbjct: 275 RRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLE 334

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
           +A  +F+ M  +++ VSW A+++ + Q     + L++F+ M + G+  + S  AC LS C
Sbjct: 335 EAKAVFDTM-PQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTC 393

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
           A +AAL+ G Q+H   I++GY    FVGN+L+ MY KCG +++A   F++ +  DV+SWN
Sbjct: 394 ADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWN 453

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
           ++IAGYA +G   EA+++F+ M      PD +T +GVL+ACSH GLV+ G+  F  M   
Sbjct: 454 TMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHD 513

Query: 586 YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI 645
           + +    EHY CMIDLL RAGRL EA +++K M  +P++ +WG LLGA R+H+N +LGR 
Sbjct: 514 FGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRS 573

Query: 646 AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705
           A EK+ ELEP+    Y LLSN++A +G+W +  K+RV ME  G +K PG SWIEV+N++H
Sbjct: 574 AAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVH 633

Query: 706 TFLSGD 711
           TF +GD
Sbjct: 634 TFSAGD 639



 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 192/580 (33%), Positives = 298/580 (51%), Gaps = 86/580 (14%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V   NK IT   ++GRV +A ++F+ M +++T TYN+M++ Y+ NGR+  A  LF  +P+
Sbjct: 38  VIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPR 97

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
            +  S+N+++     +  + +AR LFD+M   D  ++ +MI+ +   G +  AR  FDL 
Sbjct: 98  PDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLA 157

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P K D   WN M+A Y + G   EA+ L ++    + +SWN+++SGY + G+M  A + F
Sbjct: 158 PEK-DAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELF 216

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
           + M  RDVVSWN+M+ GY    D+  A + F   P ++V +W  ++SGYA+NG + EARR
Sbjct: 217 DRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARR 276

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
           +FD MP RN V+WNAM+AAY+QR  ++EA  LF  MP RN  SW TM+ GY +   L+EA
Sbjct: 277 VFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEA 336

Query: 315 RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT-------------------- 354
           + + D MP K+  +  AM++ Y Q    +E  Q+F ++G                     
Sbjct: 337 KAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADI 396

Query: 355 -----------------HDVVCW--NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMI 395
                            + V C+  N ++  Y +CG M++A N F +M  +D+V+WNTMI
Sbjct: 397 AALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMI 456

Query: 396 AGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADH 455
           AGYA                                ++ F  +AL+IF +M     K D 
Sbjct: 457 AGYA--------------------------------RHGFGKEALEIFDMMRTTSTKPDD 484

Query: 456 STLACALSACAHLAALQLG----RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL 511
            TL   L+AC+H   ++ G      +HH     G          +I +  + GR+  A  
Sbjct: 485 ITLVGVLAACSHSGLVEKGISYFYSMHH---DFGVTAKPEHYTCMIDLLGRAGRLAEAHD 541

Query: 512 LFKDA--DPVDVISWNSLIAGYAINGNA----TEAIKLFE 545
           L KD   +P D   W +L+    I+ N     + A K+FE
Sbjct: 542 LMKDMPFEP-DSTMWGALLGASRIHRNPELGRSAAEKIFE 580



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 140/458 (30%), Positives = 233/458 (50%), Gaps = 29/458 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +    ++GRVEEA  +F+  ++ + +++N+++S Y + G++++AR+LF++MP R++V
Sbjct: 166 NGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVV 225

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           SWN M++GY     + EAR LFD     D+F+W  +++ Y + G LE+AR +FD +P + 
Sbjct: 226 SWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER- 284

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           +   WNAMVA Y +    +EAK+L + MP +N+ SWN+ML+GY + G +  A   F+ M 
Sbjct: 285 NAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMP 344

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPE----QNVVSWVTMLSGYA-----RNGRM 249
           ++D VSW  ML  Y +    +   + F ++       N  ++  +LS  A       G  
Sbjct: 345 QKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQ 404

Query: 250 LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIA 309
           L  R +     +   V  NA++A Y + G +E+A   F EM ER+ VSW TMI GY R  
Sbjct: 405 LHGRLIRAGYGVGCFVG-NALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHG 463

Query: 310 KLDEARRLLDQMPYKNIAAQTAMISGYV---QNKRMDEANQIFDKIGTHDVVC------W 360
              EA  + D M   +       + G +    +  + E    +     HD         +
Sbjct: 464 FGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHY 523

Query: 361 NVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAGYAQIRQMDD-----AVKIFEEM 414
             MI    + GR+ EA +L + M    D   W  ++ G ++I +  +     A KIFE  
Sbjct: 524 TCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALL-GASRIHRNPELGRSAAEKIFEL- 581

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
            +  N   +  L + +  +    DA K+ V+M + G K
Sbjct: 582 -EPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVK 618



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 162/361 (44%), Gaps = 80/361 (22%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G  V + N  ++   + G + EA ++F     ++  T+ +++S YA+NG + +AR++F+ 
Sbjct: 221 GRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDA 280

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           MP+RN VSWN+M+A Y+    + EA+ELF+ M   ++ SW  M+T Y + G LE+A+ +F
Sbjct: 281 MPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVF 340

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEA-------------------------------- 159
           D +P K D   W AM+A Y++ G   E                                 
Sbjct: 341 DTMPQK-DAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAAL 399

Query: 160 -------KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY 212
                   +L+ A         N++L+ Y K G M  A   FE MEERDVVSWN      
Sbjct: 400 ECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWN------ 453

Query: 213 VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWN 268
                                    TM++GYAR+G   EA  +FD M   +     +   
Sbjct: 454 -------------------------TMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLV 488

Query: 269 AMIAAYVQRGQIEEAARLFIEMPE-----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
            ++AA    G +E+    F  M         P  +T MID   R  +L EA  L+  MP+
Sbjct: 489 GVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPF 548

Query: 324 K 324
           +
Sbjct: 549 E 549


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 244/590 (41%), Positives = 377/590 (63%), Gaps = 2/590 (0%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N+++  Y+++G   +A+ + D M  KNI+SWNS+++GY +N     A   F+ M ER+ +
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTI 161

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRN 263
           SWN ++ GY+    ++ A + F ++PE+NVVSW  M+ GY + G + EA  LF QMP +N
Sbjct: 162 SWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKN 221

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
           VV+W  M+   +Q G+I+EA RLF  MPE++ V+ T MI GY ++ +L EAR L D+MP 
Sbjct: 222 VVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPR 281

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
           +N+ + T MI+GYVQN+++D A ++F+ +   + V W  M+KGY  CGR+DEA  LF  M
Sbjct: 282 RNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAM 341

Query: 384 VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
             K +V  N MI  + Q  ++  A ++F++M + ++  +W+A+I  + +    LDAL++F
Sbjct: 342 PIKSVVACNAMILCFGQNGEVPKARQVFDQM-REKDEGTWSAMIKVYERKGLELDALELF 400

Query: 444 VLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
            +M +EG + +  +L   LS CA LA L  GR+IH   ++S +  D++V + L++MY KC
Sbjct: 401 RMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKC 460

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
           G +  A+ +F      DV+ WNS+I GYA +G   EA+++F +M   G+ PD VTF+GVL
Sbjct: 461 GNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVL 520

Query: 564 SACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPN 623
           SACS+ G V  GL++F  M   Y +E  +EHYACM+DLL RAG+L+EA ++++ M ++ +
Sbjct: 521 SACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEAD 580

Query: 624 AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVS 683
           A IWG LLGACR H  + L  +A +KL  LEP+    + LLSN++A  GRWD+V ++R +
Sbjct: 581 AIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRN 640

Query: 684 MEGSGAQKQPGCSWIEVKNQIHTFLSGDPK-QCRTAEICNTLKTLAAQIR 732
           M      K PGCSWI V+ ++H F  GD       +EI   L+ L+  +R
Sbjct: 641 MRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLR 690



 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 183/622 (29%), Positives = 316/622 (50%), Gaps = 90/622 (14%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           +++ ++N  IT+  + G++E+A  +F +M  KN +++NS+++ Y +N R  +A+ +F++M
Sbjct: 96  NFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM 155

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD 132
            +RN +SWN +++GY++N  + EARE+FD+M   ++ SW  M+  Y ++G + +A  LF 
Sbjct: 156 SERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFW 215

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
            +P K +   W  M+ G  + G  +EA +L D MP K++V+  +M+ GY + G +  A  
Sbjct: 216 QMPEK-NVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARM 274

Query: 193 FFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA 252
            F+ M  R+VVSW  M+ GYV+   +D A K F+ +PE+N VSW  ML GY   GR+ EA
Sbjct: 275 LFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEA 334

Query: 253 RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLD 312
             LF+ MPI++VVA NAMI  + Q G++ +A ++F +M E++  +W+ MI  Y R     
Sbjct: 335 SELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLEL 394

Query: 313 EARRLLDQMPYK----NIAAQTAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMI 364
           +A  L   M  +    N  +  +++S       +D   +I  ++       DV   +V++
Sbjct: 395 DALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLL 454

Query: 365 KGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
             Y +CG + +A  +F +   KD+V WN++I GYA                         
Sbjct: 455 SMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYA------------------------- 489

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
                  Q+   ++AL++F  M   G   D  T    LSAC++   ++ G +I       
Sbjct: 490 -------QHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIF------ 536

Query: 485 GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLF 544
                    NS+ T Y    +I++   +      VD++       G A  G   EA+ L 
Sbjct: 537 ---------NSMETKYQVEQKIEHYACM------VDLL-------GRA--GKLNEAMDLI 572

Query: 545 EEMVMEGVAPDPVTFIGVLSAC-SHVGLVDGGLKLFECMTEVYAIEPLVEH------YAC 597
           E+M ME    D + +  +L AC +H+ L          + EV A + LV        +  
Sbjct: 573 EKMPMEA---DAIIWGALLGACRTHMKLD---------LAEVAAKKLLVLEPKNAGPFIL 620

Query: 598 MIDLLSRAGRLDEAFEMVKGMK 619
           + ++ +  GR D+  E+ + M+
Sbjct: 621 LSNIYASQGRWDDVAELRRNMR 642



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 87/191 (45%), Gaps = 12/191 (6%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K G + +A ++F + + K+ V +NS+I+ YA++G   +A ++F  M    ++  +    G
Sbjct: 459 KCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVG 518

Query: 87  YL----HNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
            L    +   VK+  E+F+ M         +  +A M+    R G+L +A +L + +P +
Sbjct: 519 VLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPME 578

Query: 138 EDTACWNAMVAG---YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
            D   W A++     + K+     A K L  +  KN   +  + + Y   G     ++  
Sbjct: 579 ADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELR 638

Query: 195 EAMEERDVVSW 205
             M +R V  +
Sbjct: 639 RNMRDRRVSKY 649


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  510 bits (1314), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 244/555 (43%), Positives = 359/555 (64%), Gaps = 1/555 (0%)

Query: 178 LSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV 237
           L G  +   +  A   F+ M ERDVVSWN ML GY +   +  A + F ++P +N +SW 
Sbjct: 37  LRGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWN 96

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
            ML+ Y +NGR+ +ARRLF+      +++WN M+  YV+R ++ +A  +F  MPER+ VS
Sbjct: 97  GMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVS 156

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV 357
           W TMI GY +  +L EA+RL ++ P +++   TAM+SGYVQN  +DEA ++FD +   + 
Sbjct: 157 WNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNS 216

Query: 358 VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
           V WN +I GY QC RMD+A  LF  M  +++ +WNTMI GYAQ   +  A   F+ M  +
Sbjct: 217 VSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRM-PQ 275

Query: 418 RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI 477
           R+++SW A+I+G+ Q+ +  +AL +FV M ++G++ + ST    LS CA +AAL+LG+Q+
Sbjct: 276 RDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQV 335

Query: 478 HHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNA 537
           H   +K+G  +  +VGN+L+ MY KCG I +A ++F+  +  +V+SWN++IAGYA +G  
Sbjct: 336 HGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFG 395

Query: 538 TEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYAC 597
            EA+ LFE M   G+ PD VT +GVLSACSH GLVD G + F  MT+ Y I    +HY C
Sbjct: 396 KEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTC 455

Query: 598 MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK 657
           MIDLL RAGRLD+A  ++K M  +P+A  WG LLGA R+H N +LG  A + + E+EP  
Sbjct: 456 MIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDN 515

Query: 658 TSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRT 717
           +  Y LLSN++A +GRW +V ++R+ M   G +K PG SW+EV+N+IHTF  GD      
Sbjct: 516 SGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPER 575

Query: 718 AEICNTLKTLAAQIR 732
             I   L+ L  +++
Sbjct: 576 DRIYTFLEELDLKMK 590



 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 176/507 (34%), Positives = 278/507 (54%), Gaps = 54/507 (10%)

Query: 100 FDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA 159
           FD + R DL        C  R   L  AR LFD +P + D   WNAM++GYA+ G   EA
Sbjct: 29  FDFLERHDLRG------C-VRYRNLRAARLLFDQMPER-DVVSWNAMLSGYAQNGYVKEA 80

Query: 160 KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLD 219
           K++ D MP KN +SWN ML+ Y +NG +  A + FE+  + +++SWN M+ GYV+ + L 
Sbjct: 81  KEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLV 140

Query: 220 SAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ 279
            A   F ++PE++ VSW TM+SGYA+NG +LEA+RLF++ P+R+V  W AM++ YVQ G 
Sbjct: 141 DARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGM 200

Query: 280 IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQN 339
           ++EA R+F  MPE+N VSW  +I GYV+  ++D+AR L + MP +N+++   MI+GY QN
Sbjct: 201 LDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQN 260

Query: 340 KRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM------VNKDIVT--- 390
             + +A   FD++   D + W  +I GYAQ G  +EA++LF +M      +N+   T   
Sbjct: 261 GDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTL 320

Query: 391 ------------------------------WNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
                                          N ++  Y +   +DDA  +FE + + +  
Sbjct: 321 STCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGI-EEKEV 379

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ-IHH 479
           VSWN +I+G+ ++ F  +AL +F  M + G   D  T+   LSAC+H   +  G +  + 
Sbjct: 380 VSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYS 439

Query: 480 LAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAINGNA 537
           +    G   +      +I +  + GR+ +A+ L K+   +P D  +W +L+    I+GN 
Sbjct: 440 MTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEP-DAATWGALLGASRIHGN- 497

Query: 538 TEAIKLFEEMVMEGVAPDPVTFIGVLS 564
           TE  +   +M+ E + PD      +LS
Sbjct: 498 TELGEKAAKMIFE-MEPDNSGMYVLLS 523



 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 140/390 (35%), Positives = 236/390 (60%), Gaps = 13/390 (3%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           +F QM +++ V++N+M+S YA+NG V +A+++F++MP +N +SWN M+A Y+ N ++++A
Sbjct: 52  LFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDA 111

Query: 97  RELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNY 156
           R LF+     +L SW  M+  Y ++  L  AR +FD +P + D   WN M++GYA+ G  
Sbjct: 112 RRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPER-DEVSWNTMISGYAQNGEL 170

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELD 216
            EA++L +  P +++ +W +M+SGY +NG +  A + F+ M E++ VSWN ++ GYV+  
Sbjct: 171 LEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCK 230

Query: 217 DLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ 276
            +D A + F+ +P QNV SW TM++GYA+NG + +AR  FD+MP R+ ++W A+IA Y Q
Sbjct: 231 RMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQ 290

Query: 277 RGQIEEAARLFIEMP---ER-NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA---- 328
            G  EEA  LF+EM    ER N  ++T+ +     IA L+  +++  ++    + +    
Sbjct: 291 SGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYV 350

Query: 329 QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----V 384
             A++  Y +   +D+A  +F+ I   +VV WN MI GYA+ G   EA+ LF  M    +
Sbjct: 351 GNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGI 410

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
             D VT   +++  +    +D   + F  M
Sbjct: 411 LPDDVTMVGVLSACSHTGLVDKGTEYFYSM 440



 Score =  236 bits (603), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 141/431 (32%), Positives = 224/431 (51%), Gaps = 50/431 (11%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  ++   ++G V+EA +IF +M  KN++++N M++AY +NGR+ DAR+LFE    
Sbjct: 61  VVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKAD 120

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
             L+SWN M+ GY+  +++ +AR +FD+M   D  SW  MI+ Y + GEL +A+ LF+  
Sbjct: 121 WELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEES 180

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P + D   W AMV+GY + G  +EA+++ D MP KN VSWN++++GY +   M  A + F
Sbjct: 181 PVR-DVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELF 239

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
           EAM  ++V SWN M+ GY +  D+  A  FF ++P+++ +SW  +++GYA++G   EA  
Sbjct: 240 EAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALH 299

Query: 255 LF-------------------------------DQMPIRNVVA--------WNAMIAAYV 275
           LF                                Q+  R V A         NA++  Y 
Sbjct: 300 LFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYC 359

Query: 276 QRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI----AAQTA 331
           + G I++A  +F  + E+  VSW TMI GY R     EA  L + M    I         
Sbjct: 360 KCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVG 419

Query: 332 MISGYVQNKRMDEANQIF-----DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-VN 385
           ++S       +D+  + F     D   T +   +  MI    + GR+D+A NL + M   
Sbjct: 420 VLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFE 479

Query: 386 KDIVTWNTMIA 396
            D  TW  ++ 
Sbjct: 480 PDAATWGALLG 490


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 244/590 (41%), Positives = 377/590 (63%), Gaps = 8/590 (1%)

Query: 150 YAKIGNYNEAKKLL---DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN 206
           Y  I +Y  AK  +   D     N+   N M++  +K+G +  A + F+ M E DV++W 
Sbjct: 28  YHSINDYRTAKISIPRKDFTVDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWT 87

Query: 207 LMLDGYVELDDLDSAWKFFQKI-PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
            ++ GY++   ++ A + F ++  ++NVV+W  M+ GY R+ ++ +A +LF++MP +NVV
Sbjct: 88  TVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVV 147

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           +WN MI  Y Q G+I+ A  LF +MPERN VSW T++    +  +++EARRL D+MP ++
Sbjct: 148 SWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERD 207

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
           + + TAMI+G  +N R+DEA  +FD++   +VV WN MI GYAQ  R+DEA++LF +M  
Sbjct: 208 VISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMITGYAQNLRLDEALDLFERMPE 267

Query: 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV- 444
           +D+ +WNTMI G  Q   +  A K+F EM K+ N +SW  +I+G +Q     +ALKIF  
Sbjct: 268 RDLPSWNTMITGLIQNGDLRRARKLFNEMPKK-NVISWTTMITGCVQEGESEEALKIFSR 326

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG 504
           +++  G K +  T    L AC++LA L  G+Q+H +  K+ Y +  FV ++LI MY+KCG
Sbjct: 327 MLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCG 386

Query: 505 RIQNAELLFKDA--DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
            +  A  +F D      D++SWN +IA YA +G   EAI  F+EM   G  PD VT++G+
Sbjct: 387 ELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGL 446

Query: 563 LSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKP 622
           LSACSH GLV+ GLK F+ + +  +I    +HYAC++DL  RAGRL EAF  ++ ++ KP
Sbjct: 447 LSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKP 506

Query: 623 NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRV 682
           +A +WG LL  C +H N+K+G+ A +KL E+EP+    Y LLSN++A  G+W E  +VR+
Sbjct: 507 SARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRL 566

Query: 683 SMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            M+  G +KQPGCSWIEV N++H F+ GD    ++  I + L+ L ++++
Sbjct: 567 KMKDKGLKKQPGCSWIEVGNRVHVFVVGDKSHSQSKLIYSLLRDLHSKMK 616



 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 170/501 (33%), Positives = 278/501 (55%), Gaps = 34/501 (6%)

Query: 62  VNDARKLFEQMPQR------NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMI 115
           +ND R     +P++      N+   N MI     + ++ EAR LFD+M  PD+ +W  +I
Sbjct: 31  INDYRTAKISIPRKDFTVDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVI 90

Query: 116 TCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN 175
           + Y + G +E+AR LFD +  K++   W AMV GY +    ++A+KL + MP+KN+VSWN
Sbjct: 91  SGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWN 150

Query: 176 SMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
           +M+ GY +NG +  A   FE M ER+VVSWN ++    +   ++ A + F ++PE++V+S
Sbjct: 151 TMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVIS 210

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
           W  M++G ++NGR+ EAR LFD+MP RNVV+WNAMI  Y Q  +++EA  LF  MPER+ 
Sbjct: 211 WTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMITGYAQNLRLDEALDLFERMPERDL 270

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI--- 352
            SW TMI G ++   L  AR+L ++MP KN+ + T MI+G VQ    +EA +IF ++   
Sbjct: 271 PSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLST 330

Query: 353 -------GTHDVV---CWNVMIKGYAQCGRMDEAINLFRQMVNKD-IVTWNTMIAGYAQI 401
                  GT   V   C N+     A  G   +   +  + V +D     + +I  Y++ 
Sbjct: 331 NGAKPNQGTFVSVLGACSNL-----AGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKC 385

Query: 402 RQMDDAVKIFEE-MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
            ++  A K+F++ M  +R+ VSWN +I+ +  + +  +A+  F  M + G K D  T   
Sbjct: 386 GELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVG 445

Query: 461 ALSACAHLAALQLGRQIHHLAIKSGYV---NDLFVGNSLITMYAKCGRIQNAELLFK--D 515
            LSAC+H   ++ G +     +K   +    D +    L+ +  + GR++ A    +  +
Sbjct: 446 LLSACSHAGLVEEGLKYFDELVKDRSILVREDHYA--CLVDLCGRAGRLKEAFGFIERLE 503

Query: 516 ADPVDVISWNSLIAGYAINGN 536
             P   + W +L+AG  ++ N
Sbjct: 504 TKPSARV-WGALLAGCNVHAN 523



 Score =  267 bits (682), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 136/416 (32%), Positives = 250/416 (60%), Gaps = 17/416 (4%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM-PQRNLVSW 80
           IT L K GR+ EA ++F +M + + +T+ ++IS Y K G + +AR+LF+++  ++N+V+W
Sbjct: 59  ITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTW 118

Query: 81  NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
            +M+ GY+ ++K+ +A +LF++M   ++ SW  MI  Y + G ++ A  LF+ +P + + 
Sbjct: 119 TAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPER-NV 177

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER 200
             WN +++  A+ G   EA++L D MP ++++SW +M++G +KNG +  A   F+ M ER
Sbjct: 178 VSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMPER 237

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
           +VVSWN M+ GY +   LD A   F+++PE+++ SW TM++G  +NG +  AR+LF++MP
Sbjct: 238 NVVSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMP 297

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-----SWTTMIDGYVRIAKLDEAR 315
            +NV++W  MI   VQ G+ EEA ++F  M   N       ++ +++     +A L E +
Sbjct: 298 KKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQ 357

Query: 316 ---RLLDQMPYKNIA-AQTAMISGYVQNKRMDEANQIFDK--IGTHDVVCWNVMIKGYAQ 369
              +++ +  Y++     +A+I+ Y +   +  A ++FD       D+V WN +I  YA 
Sbjct: 358 QVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAH 417

Query: 370 CGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
            G   EAIN F++M       D VT+  +++  +    +++ +K F+E+ K R+ +
Sbjct: 418 HGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSIL 473



 Score =  265 bits (677), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 168/532 (31%), Positives = 284/532 (53%), Gaps = 25/532 (4%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           N    N MI+  +K+GR+ +AR+LF++M + ++++W ++I+GY+    ++EAR LFD++ 
Sbjct: 51  NVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVD 110

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
            + ++ +W  M+  Y R  ++  A +LF+ +PNK +   WN M+ GYA+ G  + A  L 
Sbjct: 111 AKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNK-NVVSWNTMIDGYAQNGRIDSAMYLF 169

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWK 223
           + MP +N+VSWN+++S   + G +  A + F+ M ERDV+SW  M+ G  +   +D A  
Sbjct: 170 EKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARL 229

Query: 224 FFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEA 283
            F ++PE+NVVSW  M++GYA+N R+ EA  LF++MP R++ +WN MI   +Q G +  A
Sbjct: 230 LFDRMPERNVVSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRA 289

Query: 284 ARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA--QTAMIS--GYVQN 339
            +LF EMP++N +SWTTMI G V+  + +EA ++  +M   N A   Q   +S  G   N
Sbjct: 290 RKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSN 349

Query: 340 ----KRMDEANQIFDKIGTHD-VVCWNVMIKGYAQCGRMDEAINLFRQMVN--KDIVTWN 392
                   + +QI  K    D     + +I  Y++CG +  A  +F   +   +D+V+WN
Sbjct: 350 LAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWN 409

Query: 393 TMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
            +IA YA      +A+  F+EM   G + + V++  L+S         + LK F  + ++
Sbjct: 410 GIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKD 469

Query: 450 GK---KADHSTLACALSACAHLAALQLGRQ-IHHLAIK-SGYVNDLFVGNSLITMYAKCG 504
                + DH   AC +  C     L+     I  L  K S  V    +    +    K G
Sbjct: 470 RSILVREDH--YACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIG 527

Query: 505 RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
           +    +LL  + +P +  ++  L   YA  G   EA ++  +M  +G+   P
Sbjct: 528 KQAAKKLL--EVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQP 577



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/400 (27%), Positives = 206/400 (51%), Gaps = 29/400 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  ++ L + GR+EEA ++F +M +++ +++ +MI+  +KNGR+++AR LF++MP+
Sbjct: 177 VVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMPE 236

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN+VSWN+MI GY  N ++ EA +LF++M   DL SW  MIT   + G+L +AR+LF+ +
Sbjct: 237 RNVVSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEM 296

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN-----------SMLSGYTK 183
           P K++   W  M+ G  + G   EA K+   M S N    N           S L+G  +
Sbjct: 297 P-KKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGE 355

Query: 184 NGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK--IPEQNVVSWVTMLS 241
             ++H         +   VVS   +++ Y +  +L +A K F      ++++VSW  +++
Sbjct: 356 GQQVHQIISKTVYQDSTFVVS--ALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIA 413

Query: 242 GYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPV- 296
            YA +G   EA   F +M         V +  +++A    G +EE  + F E+ +   + 
Sbjct: 414 AYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSIL 473

Query: 297 ----SWTTMIDGYVRIAKLDEARRLLDQMPYKNIA-AQTAMISG---YVQNKRMDEANQI 348
                +  ++D   R  +L EA   ++++  K  A    A+++G   +   K   +A + 
Sbjct: 474 VREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKK 533

Query: 349 FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
             ++   +   + ++   YA  G+  EA  +  +M +K +
Sbjct: 534 LLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGL 573


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 277/795 (34%), Positives = 438/795 (55%), Gaps = 82/795 (10%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           + +I  LG+ GRV EA ++F  M +++ + +NSMISAY  NG  + AR L++ +   N+ 
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR 97

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           +   +++GY    +V EAR +FD M   +  +W  MI+CY + G++  AR LFD +P++ 
Sbjct: 98  TGAILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSR- 156

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK--------------- 183
           D + WN+M+ GY       +A+ L + MP +N+VSW  M+SGY +               
Sbjct: 157 DVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMH 216

Query: 184 -NGEMHLASKFFEAME-----------------------ERDVVSWNLMLDGYV-ELDDL 218
             G +   S F  A+                        ERDVV    +L+ Y  +   L
Sbjct: 217 REGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVL 276

Query: 219 DSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
           D+A KFF+ + E+N  +W TM++  +  GR+  A  ++++ P++++    A+I    Q G
Sbjct: 277 DTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCG 336

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
           +I++A  LF ++PE   VSW  +I GY++   ++EA+ L D+MP++N  +   MI+GY Q
Sbjct: 337 RIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQ 396

Query: 339 NKRMDEA---------------------------NQIFDKIGTH------DVVC------ 359
           N R +EA                           N +  + GT        V C      
Sbjct: 397 NGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFA 456

Query: 360 WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRN 419
            N +I  Y +C  M+ A  +F +MV KDIV+WN+ +A   Q   +D+A   F+ M   R+
Sbjct: 457 CNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM-LSRD 515

Query: 420 TVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHH 479
            VSW  +IS +   E   +A+  F  M  E +  +   L   L  C  L A ++G+QIH 
Sbjct: 516 DVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHT 575

Query: 480 LAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATE 539
           +AIK G  ++L V N+LI+MY KCG   ++  +F   +  D+ +WN++I GYA +G   E
Sbjct: 576 VAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQHGLGRE 634

Query: 540 AIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMI 599
           AIK+++ M   GV P+ VTF+G+L+ACSH GLVD G K F+ M++ Y + PL EHYACM+
Sbjct: 635 AIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMV 694

Query: 600 DLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTS 659
           DLL R G +  A + +  M I+P+  IW  LLGAC++H+N ++G+ A EKL  +EP    
Sbjct: 695 DLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAG 754

Query: 660 CYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAE 719
            Y +LSN+++  G W EV +VR  M+  G  K+PGCSW ++K+++H+F++GD +  +  E
Sbjct: 755 NYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEE 814

Query: 720 ICNTLKTLAAQIRNT 734
           I  TL+ L   ++ T
Sbjct: 815 IVATLEELYTLLKAT 829



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 139/275 (50%), Gaps = 18/275 (6%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F  N  IT  GK   +E A ++FS+M  K+ V++NS ++A  +N  +++AR  F+ M  R
Sbjct: 455 FACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSR 514

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELF 131
           + VSW ++I+ Y H ++  EA   F  MF     P+     +++      G  +  +++ 
Sbjct: 515 DDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIH 574

Query: 132 DL---LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
            +   L    +    NA+++ Y K G   +++++ D M  ++I +WN++++GY ++G   
Sbjct: 575 TVAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQHGLGR 633

Query: 189 LASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTM 239
            A K ++ ME   V    V++  +L+       +D  WKFF+ + +   ++     +  M
Sbjct: 634 EAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACM 693

Query: 240 LSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAA 273
           +    R G +  A +    MPI  + V W+A++ A
Sbjct: 694 VDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGA 728



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 159/365 (43%), Gaps = 60/365 (16%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP- 73
           V + N  IT   ++G V EA ++F +M  +NT+++  MI+ YA+NGR  +A  L +++  
Sbjct: 353 VVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHR 412

Query: 74  --------------------------------------QRNLVSWNSMIAGYLHNDKVKE 95
                                                 Q N  + N++I  Y     ++ 
Sbjct: 413 SGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEY 472

Query: 96  ARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGN 155
           AR++F +M   D+ SW   +    +   L++AR  FD + +++D + W  +++ YA    
Sbjct: 473 ARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVS-WTTIISAYAHAEQ 531

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLS---------GYTKNGEMHLASKFFEAMEERDVVSWN 206
            NEA      M  ++ +  + +L+         G +K G+          M+   +V+ N
Sbjct: 532 SNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVA-N 590

Query: 207 LMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP----IR 262
            ++  Y +    DS  + F  + E+++ +W T+++GYA++G   EA +++  M     + 
Sbjct: 591 ALISMYFKCGCADSR-RIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLP 649

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERN-----PVSWTTMIDGYVRIAKLDEARRL 317
           N V +  ++ A    G ++E  + F  M +       P  +  M+D   R   +  A + 
Sbjct: 650 NEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQF 709

Query: 318 LDQMP 322
           +  MP
Sbjct: 710 IYDMP 714


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 277/795 (34%), Positives = 438/795 (55%), Gaps = 82/795 (10%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           + +I  LG+ GRV EA ++F  M +++ + +NSMISAY  NG  + AR L++ +   N+ 
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR 97

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           +   +++GY    +V EAR +FD M   +  +W  MI+CY + G++  AR LFD +P++ 
Sbjct: 98  TGAILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSR- 156

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK--------------- 183
           D + WN+M+ GY       +A+ L + MP +N+VSW  M+SGY +               
Sbjct: 157 DVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMH 216

Query: 184 -NGEMHLASKFFEAME-----------------------ERDVVSWNLMLDGYV-ELDDL 218
             G +   S F  A+                        ERDVV    +L+ Y  +   L
Sbjct: 217 REGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVL 276

Query: 219 DSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
           D+A KFF+ + E+N  +W TM++  +  GR+  A  ++++ P++++    A+I    Q G
Sbjct: 277 DTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCG 336

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
           +I++A  LF ++PE   VSW  +I GY++   ++EA+ L D+MP++N  +   MI+GY Q
Sbjct: 337 RIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQ 396

Query: 339 NKRMDEA---------------------------NQIFDKIGTH------DVVC------ 359
           N R +EA                           N +  + GT        V C      
Sbjct: 397 NGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFA 456

Query: 360 WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRN 419
            N +I  Y +C  M+ A  +F +MV KDIV+WN+ +A   Q   +D+A   F+ M   R+
Sbjct: 457 CNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM-LSRD 515

Query: 420 TVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHH 479
            VSW  +IS +   E   +A+  F  M  E +  +   L   L  C  L A ++G+QIH 
Sbjct: 516 DVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHT 575

Query: 480 LAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATE 539
           +AIK G  ++L V N+LI+MY KCG   ++  +F   +  D+ +WN++I GYA +G   E
Sbjct: 576 VAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQHGLGRE 634

Query: 540 AIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMI 599
           AIK+++ M   GV P+ VTF+G+L+ACSH GLVD G K F+ M++ Y + PL EHYACM+
Sbjct: 635 AIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMV 694

Query: 600 DLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTS 659
           DLL R G +  A + +  M I+P+  IW  LLGAC++H+N ++G+ A EKL  +EP    
Sbjct: 695 DLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAG 754

Query: 660 CYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAE 719
            Y +LSN+++  G W EV +VR  M+  G  K+PGCSW ++K+++H+F++GD +  +  E
Sbjct: 755 NYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEE 814

Query: 720 ICNTLKTLAAQIRNT 734
           I  TL+ L   ++ T
Sbjct: 815 IVATLEELYTLLKAT 829



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 139/275 (50%), Gaps = 18/275 (6%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F  N  IT  GK   +E A ++FS+M  K+ V++NS ++A  +N  +++AR  F+ M  R
Sbjct: 455 FACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSR 514

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELF 131
           + VSW ++I+ Y H ++  EA   F  MF     P+     +++      G  +  +++ 
Sbjct: 515 DDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIH 574

Query: 132 DL---LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
            +   L    +    NA+++ Y K G   +++++ D M  ++I +WN++++GY ++G   
Sbjct: 575 TVAIKLGMDSELIVANALISMYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQHGLGR 633

Query: 189 LASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTM 239
            A K ++ ME   V    V++  +L+       +D  WKFF+ + +   ++     +  M
Sbjct: 634 EAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACM 693

Query: 240 LSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAA 273
           +    R G +  A +    MPI  + V W+A++ A
Sbjct: 694 VDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGA 728



 Score = 97.1 bits (240), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 159/365 (43%), Gaps = 60/365 (16%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP- 73
           V + N  IT   ++G V EA ++F +M  +NT+++  MI+ YA+NGR  +A  L +++  
Sbjct: 353 VVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHR 412

Query: 74  --------------------------------------QRNLVSWNSMIAGYLHNDKVKE 95
                                                 Q N  + N++I  Y     ++ 
Sbjct: 413 SGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEY 472

Query: 96  ARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGN 155
           AR++F +M   D+ SW   +    +   L++AR  FD + +++D + W  +++ YA    
Sbjct: 473 ARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVS-WTTIISAYAHAEQ 531

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLS---------GYTKNGEMHLASKFFEAMEERDVVSWN 206
            NEA      M  ++ +  + +L+         G +K G+          M+   +V+ N
Sbjct: 532 SNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVA-N 590

Query: 207 LMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP----IR 262
            ++  Y +    DS  + F  + E+++ +W T+++GYA++G   EA +++  M     + 
Sbjct: 591 ALISMYFKCGCADSR-RIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLP 649

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERN-----PVSWTTMIDGYVRIAKLDEARRL 317
           N V +  ++ A    G ++E  + F  M +       P  +  M+D   R   +  A + 
Sbjct: 650 NEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQF 709

Query: 318 LDQMP 322
           +  MP
Sbjct: 710 IYDMP 714


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 238/597 (39%), Positives = 376/597 (62%), Gaps = 6/597 (1%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N  +   ++IG  +EA+KL D+  SK+I SWNSM++GY  N     A K F+ M +R+++
Sbjct: 21  NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNII 80

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRN 263
           SWN ++ GY++  ++D A K F  +PE+NVVSW  ++ GY  NG++  A  LF +MP +N
Sbjct: 81  SWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKN 140

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
            V+W  M+  ++Q G+I++A +L+  +P+++ ++ T+MI G  +  ++DEAR + D+M  
Sbjct: 141 KVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSE 200

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
           +++   T M++GY QN R+D+A +IFD +     V W  M+ GY Q GR+++A  LF  M
Sbjct: 201 RSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVM 260

Query: 384 VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
             K ++  N MI+G  Q  ++  A ++F+ M K RN  SW  +I    +N F L+AL +F
Sbjct: 261 PVKPVIACNAMISGLGQKGEIAKARRVFDSM-KERNDASWQTVIKIHERNGFELEALDLF 319

Query: 444 VLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
           +LM ++G +    TL   LS CA LA+L  G+Q+H   ++  +  D++V + L+TMY KC
Sbjct: 320 ILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKC 379

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG-VAPDPVTFIGV 562
           G +  ++L+F      D+I WNS+I+GYA +G   EA+K+F EM + G   P+ VTF+  
Sbjct: 380 GELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVAT 439

Query: 563 LSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKP 622
           LSACS+ G+V+ GLK++E M  V+ ++P+  HYACM+D+L RAGR +EA EM+  M ++P
Sbjct: 440 LSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEP 499

Query: 623 NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRV 682
           +A +WG+LLGACR H  + +     +KL E+EP+ +  Y LLSNM+A  GRW +V ++R 
Sbjct: 500 DAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRK 559

Query: 683 SMEGSGAQKQPGCSWIEVKNQIHTFLSG----DPKQCRTAEICNTLKTLAAQIRNTP 735
            M+    +K PGCSW EV+N++H F  G     P+Q    +I + L  L  +    P
Sbjct: 560 LMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYNP 616



 Score =  269 bits (687), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 181/612 (29%), Positives = 309/612 (50%), Gaps = 77/612 (12%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N +IT L + G++ EA K+F     K+  ++NSM++ Y  N    DARKLF++MP RN++
Sbjct: 21  NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNII 80

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           SWN +++GY+ N ++ EAR++FD M   ++ SW  ++  Y   G+++ A  LF  +P K 
Sbjct: 81  SWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKN 140

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
             + W  M+ G+ + G  ++A KL + +P K+ ++  SM+ G  K G +  A + F+ M 
Sbjct: 141 KVS-WTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMS 199

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
           ER V++W  M+ GY + + +D A K F  +PE+  VSW +ML GY +NGR+ +A  LF+ 
Sbjct: 200 ERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEV 259

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
           MP++ V+A NAMI+   Q+G+I +A R+F  M ERN  SW T+I  + R     EA  L 
Sbjct: 260 MPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLF 319

Query: 319 DQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQC 370
             M  + +        +++S       +    Q+  ++       DV   +V++  Y +C
Sbjct: 320 ILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKC 379

Query: 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
           G + ++  +F +  +KDI+ WN++I+GYA     ++A+K+F EM            +SG 
Sbjct: 380 GELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMP-----------LSG- 427

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
                                K +  T    LSAC++   ++ G +I+  +++S +    
Sbjct: 428 -------------------STKPNEVTFVATLSACSYAGMVEEGLKIYE-SMESVF---- 463

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME 550
             G   IT +  C               VD++       G A  G   EA+++ + M +E
Sbjct: 464 --GVKPITAHYACM--------------VDML-------GRA--GRFNEAMEMIDSMTVE 498

Query: 551 GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVE-HYACMIDLLSRAGRLD 609
              PD   +  +L AC     +D  +  F C  ++  IEP     Y  + ++ +  GR  
Sbjct: 499 ---PDAAVWGSLLGACRTHSQLD--VAEF-CAKKLIEIEPENSGTYILLSNMYASQGRWA 552

Query: 610 EAFEMVKGMKIK 621
           +  E+ K MK +
Sbjct: 553 DVAELRKLMKTR 564



 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 113/443 (25%), Positives = 213/443 (48%), Gaps = 51/443 (11%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           + + N  ++   K+G ++EA K+F  M ++N V++ +++  Y  NG+V+ A  LF +MP+
Sbjct: 79  IISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPE 138

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           +N VSW  M+ G+L + ++ +A +L++ +   D  +   MI    ++G +++ARE+FD +
Sbjct: 139 KNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEM 198

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
            ++     W  MV GY +    ++A+K+ D MP K  VSW SML GY +NG +  A + F
Sbjct: 199 -SERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELF 257

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
           E M  + V++ N M+ G  +  ++  A + F  + E+N  SW T++  + RNG  LEA  
Sbjct: 258 EVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALD 317

Query: 255 LFDQMPIR---------------------------------------NVVAWNAMIAAYV 275
           LF  M  +                                       +V   + ++  Y+
Sbjct: 318 LFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYI 377

Query: 276 QRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK-----NIAAQT 330
           + G++ ++  +F   P ++ + W ++I GY      +EA ++  +MP       N     
Sbjct: 378 KCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFV 437

Query: 331 AMISGYVQNKRMDEANQIFDKI----GTHDVVC-WNVMIKGYAQCGRMDEAINLFRQM-V 384
           A +S       ++E  +I++ +    G   +   +  M+    + GR +EA+ +   M V
Sbjct: 438 ATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTV 497

Query: 385 NKDIVTWNTMIAGYAQIRQMDDA 407
             D   W +++       Q+D A
Sbjct: 498 EPDAAVWGSLLGACRTHSQLDVA 520


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 271/797 (34%), Positives = 427/797 (53%), Gaps = 84/797 (10%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
            + +I +L + GR+ EA ++F  M  ++ + +NSMISAY  +G + DAR LF+ +   N+
Sbjct: 36  HSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNV 95

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
            +   +++GY    +V +AR +FD M   +  +W  M++CY + G++  AR LFD +P++
Sbjct: 96  RTATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSR 155

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            D   WN+MV GY       +A  L   MP +N+V+W  M+SGY +  +       F  M
Sbjct: 156 -DVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMM 214

Query: 198 E---------------------------------------ERDVVSWNLMLDGYV-ELDD 217
                                                   E DVV    +L+ Y  +   
Sbjct: 215 HHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASA 274

Query: 218 LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR 277
           LD A KFF  + E+N  +W TM++  +  GR+  A  ++ + P++++ +  A++    + 
Sbjct: 275 LDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLARC 334

Query: 278 GQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYV 337
           G+I EA  LF ++P+   VSW  MI GY++   +DEA+ L D+MP++N  +   MI+GY 
Sbjct: 335 GRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYA 394

Query: 338 QNKRMDEANQIF----------------------DKIGT------------------HDV 357
           QN R +EA  +                         IG                   +  
Sbjct: 395 QNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSY 454

Query: 358 VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
           VC N +I  Y +C  M+    +F +M  KD V+WN+ IA   Q   ++DA  IF+ M   
Sbjct: 455 VC-NALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNM-LS 512

Query: 418 RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI 477
           R+ VSW  +IS + Q E   +A++ F  M  E +K +   L   LS C  L + +LG+QI
Sbjct: 513 RDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQI 572

Query: 478 HHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNA 537
           H +AIK G  ++L V N+L++MY KCG   ++  +F   +  D+ +WN+ I G A +G  
Sbjct: 573 HTVAIKHGMDSELIVANALMSMYFKCG-CADSHKVFDSMEERDIFTWNTFITGCAQHGLG 631

Query: 538 TEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYAC 597
            EAIK++E M   GV P+ VTF+G+L+ACSH GLVD G + F+ M+  Y + PL+EHYAC
Sbjct: 632 REAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYAC 691

Query: 598 MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK 657
           M+DLL R G +  A + +  M I+P+  IW  LLGAC++H+N ++GR A EKL   EP  
Sbjct: 692 MVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSN 751

Query: 658 TSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRT 717
              Y +LSN+++  G W EV ++R  M+  G  K+PGCSW++++N++H+F++GD +  + 
Sbjct: 752 AGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEKI 811

Query: 718 AEICNTLKTLAAQIRNT 734
            EI  TL+ L   +R T
Sbjct: 812 EEIDYTLQDLYTLLRGT 828



 Score =  261 bits (668), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 180/645 (27%), Positives = 302/645 (46%), Gaps = 115/645 (17%)

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           D +  +A +   A++G   EA+++ DAMP ++I++WNSM+S Y  +G +  A   F+A+ 
Sbjct: 32  DKSAHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAIS 91

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
             +V +  ++L GY  L  +  A + F  +PE+N V+W  M+S Y +NG +  ARRLFD 
Sbjct: 92  GGNVRTATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDA 151

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
           MP R+V +WN+M+  Y    Q+ +A  LF +MP+RN V+WT MI GYVRI +  +   + 
Sbjct: 152 MPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIF 211

Query: 319 DQMPYK---------------------------------------NIAAQTAMISGYVQN 339
             M ++                                       ++   T++++ Y ++
Sbjct: 212 RMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRD 271

Query: 340 KR-MDEANQIFDKIGTHDVVCWNVMI-------------------------------KGY 367
              +D A + FD +   +   W+ MI                                G 
Sbjct: 272 ASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGL 331

Query: 368 AQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
           A+CGR+ EA  LF Q+ +  +V+WN MI GY Q   +D+A ++F+ M   RNT+SW  +I
Sbjct: 332 ARCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRM-PFRNTISWAGMI 390

Query: 428 SGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV 487
           +G+ QN    +AL +   + + G     S+L  +  AC+H+ AL+ GRQ+H LA+K+G  
Sbjct: 391 AGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQ 450

Query: 488 NDLFVGNSLITMYAKC-------------------------------GRIQNAELLFKDA 516
            + +V N+LI+MY KC                                 +++A  +F + 
Sbjct: 451 FNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNM 510

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGL 576
              DV+SW ++I+ YA      EA++ F+ M+ E   P+      +LS C  +G    G 
Sbjct: 511 LSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQ 570

Query: 577 KLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRM 636
           ++     +      L+   A M  +  + G  D + ++   M+ + +   W T +  C  
Sbjct: 571 QIHTVAIKHGMDSELIVANALM-SMYFKCGCAD-SHKVFDSME-ERDIFTWNTFITGCAQ 627

Query: 637 HQNIKLGRIAVEKLSELE-----PQKTSCYALLSNMHAEAGRWDE 676
           H    LGR A++    +E     P + +   LL N  + AG  DE
Sbjct: 628 H---GLGREAIKMYEHMESVGVLPNEVTFVGLL-NACSHAGLVDE 668



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 119/400 (29%), Positives = 197/400 (49%), Gaps = 52/400 (13%)

Query: 259 MPIRNV------VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLD 312
           +P+R+V       A +A I    + G++ EA  +F  MP R+ ++W +MI  Y     L+
Sbjct: 22  LPVRSVHRALDKSAHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLE 81

Query: 313 EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGR 372
           +AR L D +   N+   T ++SGY +  R+ +A ++FD +   + V WN M+  Y Q G 
Sbjct: 82  DARILFDAISGGNVRTATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGD 141

Query: 373 MDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
           +  A  LF  M ++D+ +WN+M+ GY   RQM DA  +F++M  +RN V+W  +ISG+++
Sbjct: 142 ITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQM-PQRNLVTWTVMISGYVR 200

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
            E H     IF +M  EG   D S  A  LSA   L  L +   +  L +K+G+ +D+ +
Sbjct: 201 IEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVI 260

Query: 493 GNSLITMYAKCGRIQNAELLFKDA-------------------------------DPVDV 521
           G S++ +Y +     +  + F D                                DPV  
Sbjct: 261 GTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKS 320

Query: 522 I-SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP--VTFIGVLSACSHVGLVDGGLKL 578
           I S  +L+ G A  G  TEA  LFE++      PDP  V++  +++     G+VD   +L
Sbjct: 321 IPSQTALLTGLARCGRITEARILFEQI------PDPIVVSWNAMITGYMQNGMVDEAKEL 374

Query: 579 FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
           F+ M     I      +A MI   ++ GR +EA ++++ +
Sbjct: 375 FDRMPFRNTIS-----WAGMIAGYAQNGRSEEALDLLQAL 409



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 152/582 (26%), Positives = 262/582 (45%), Gaps = 63/582 (10%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM-- 72
           V + N  +T    S ++ +A  +F QM Q+N VT+  MIS Y +  +      +F  M  
Sbjct: 157 VTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHH 216

Query: 73  -----PQRNLVSWNSMIAGYLHNDKVKEARELFDKM-FRPDLFSWALMITCYTRKGE-LE 125
                 Q N  S  S + G      ++  R L  K  F  D+     ++  YTR    L+
Sbjct: 217 EGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALD 276

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
            A + FD +  + +   W+ M+A  +  G  + A  +    P K+I S  ++L+G  + G
Sbjct: 277 IAIKFFDGMVERNEYT-WSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLARCG 335

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR 245
            +  A   FE + +  VVSWN M+ GY++   +D A + F ++P +N +SW  M++GYA+
Sbjct: 336 RITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQ 395

Query: 246 NGRMLEARRLFDQMPIRN-----VVAWNAMIAAYVQRGQIE---EAARLFIEMP-ERNPV 296
           NGR  EA  L   +  RN     + +  +   A    G +E   +   L ++   + N  
Sbjct: 396 NGRSEEALDLLQALH-RNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSY 454

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHD 356
               +I  Y +   ++  R++ ++M  K+  +  + I+  VQN  +++A  IFD + + D
Sbjct: 455 VCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRD 514

Query: 357 VVCWNVMIKGYAQCGRMDEAINLFRQMV------NKDIVTWNTMIA---GYAQIRQ---- 403
           VV W  +I  YAQ  R DEA+  F+ M+      N  I+T    +    G A++ Q    
Sbjct: 515 VVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHT 574

Query: 404 ------MD-------------------DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
                 MD                   D+ K+F+ M + R+  +WN  I+G  Q+    +
Sbjct: 575 VAIKHGMDSELIVANALMSMYFKCGCADSHKVFDSM-EERDIFTWNTFITGCAQHGLGRE 633

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ-IHHLAIKSGYVNDLFVGNSLI 497
           A+K++  M   G   +  T    L+AC+H   +  G Q    ++   G    L     ++
Sbjct: 634 AIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMV 693

Query: 498 TMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGNA 537
            +  + G +Q AE    D  P+  D + W++L+    I+ NA
Sbjct: 694 DLLGRTGDVQGAEKFIYDM-PIEPDTVIWSALLGACKIHKNA 734


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 251/577 (43%), Positives = 363/577 (62%), Gaps = 5/577 (0%)

Query: 140 TACWN-AMVAGYAKIGNYNEAKKLLD--AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEA 196
           + C N + ++ Y +IG+ + A+K+ D   +P + I SWN+M+S Y ++ +   A   F+ 
Sbjct: 18  SLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQ 77

Query: 197 MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF 256
           M +R+ VS+N M+ GYV+   +  A K F  +PE+NVVSW +M+ GY + G + EA +LF
Sbjct: 78  MPQRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLF 137

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
            +MP RNVV+W  MI   ++  +I++A +LF  +PE++ V  T MI GY ++ +LDEAR 
Sbjct: 138 WEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARE 197

Query: 317 LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
           L D+M  +N+   T M+SGY +N R+D A ++F+ +   + V W  M+ GY Q GRM EA
Sbjct: 198 LFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMKEA 257

Query: 377 INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
             LF  M  K IV  N MI  +    +M  A  +FE M K R+  +WNA+I  F +    
Sbjct: 258 FELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGM-KERDEGTWNAMIKVFERKGLD 316

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSL 496
           L+AL +F  M +EG   +  ++   LS CA LA+L  GRQ+H   ++S +  DL+V + L
Sbjct: 317 LEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVL 376

Query: 497 ITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
           ITMY KCG +  A+ +F      DV+ WNS+I GY+ +G   EA+ +F +M   GV PD 
Sbjct: 377 ITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDE 436

Query: 557 VTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVK 616
           VTFIGVLSACS+ G V  G ++FE M   Y +EP +EHYACM+DLL RAGR+DEA E+V+
Sbjct: 437 VTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVE 496

Query: 617 GMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDE 676
            M ++P+A +WG LLGACR H  + L  +AVEKL++LEP+    Y LLS+M+A  GRW +
Sbjct: 497 KMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYATKGRWRD 556

Query: 677 VEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPK 713
           VE +R  +      K PGCSWIEV+ ++H F  GD K
Sbjct: 557 VEVLRKKIN-RRVIKFPGCSWIEVEKKVHMFTGGDSK 592



 Score =  266 bits (679), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 146/408 (35%), Positives = 236/408 (57%), Gaps = 13/408 (3%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  ++   +S +  +A+ +F QM Q+NTV++N MIS Y KNG V DARK+F+ MP+RN+V
Sbjct: 56  NAMVSAYFESHKPRDALLLFDQMPQRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVV 115

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           SW SM+ GY+    V+EA +LF +M R ++ SW +MI    ++  ++ A++LFD++P K+
Sbjct: 116 SWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKD 175

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
                N M+ GY ++G  +EA++L D M  +N+ +W +M+SGY KNG + +A K FE M 
Sbjct: 176 VVVVTN-MIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMP 234

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
           ER+ VSW  ML GY +   +  A++ F+ +P + +V+   M+  +   G M  AR +F+ 
Sbjct: 235 ERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEG 294

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEA 314
           M  R+   WNAMI  + ++G   EA  LF  M       N  S  +++     +A LD  
Sbjct: 295 MKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHG 354

Query: 315 R----RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC 370
           R    RL+     +++   + +I+ YV+   +  A  IF++    DVV WN MI GY+Q 
Sbjct: 355 RQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQH 414

Query: 371 GRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           G  +EA+N+F  M    V  D VT+  +++  +   ++ +  +IFE M
Sbjct: 415 GLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAM 462



 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 160/521 (30%), Positives = 272/521 (52%), Gaps = 47/521 (9%)

Query: 22  ITQLGKSGRVEEAIKIF--SQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVS 79
           I++ G+ G +  A K+F  + + Q+   ++N+M+SAY ++ +  DA  LF+QMPQRN VS
Sbjct: 26  ISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMPQRNTVS 85

Query: 80  WNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKED 139
           +N MI+GY+ N  V +AR++FD M   ++ SW  M+  Y ++G +E+A +LF  +P + +
Sbjct: 86  FNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRR-N 144

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE 199
              W  M+ G  K    ++AKKL D +P K++V   +M+ GY + G +  A + F+ M+ 
Sbjct: 145 VVSWTVMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKV 204

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM 259
           R+V +W  M+ GY +   +D A K F+ +PE+N VSW  ML GY ++GRM EA  LF+ M
Sbjct: 205 RNVFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAM 264

Query: 260 PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLD 319
           P++ +VA N MI  +   G++  A  +F  M ER+  +W  MI  + R     EA  L  
Sbjct: 265 PVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFA 324

Query: 320 QMPYKNIA----AQTAMISGYVQNKRMDEANQIFDKI----GTHDVVCWNVMIKGYAQCG 371
           +M  + +A    +  +++S       +D   Q+  ++       D+   +V+I  Y +CG
Sbjct: 325 RMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCG 384

Query: 372 RMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFL 431
            +  A  +F + + KD+V WN+MI GY+Q    ++A+ +F +                  
Sbjct: 385 DLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHD------------------ 426

Query: 432 QNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLF 491
                         M   G + D  T    LSAC++   ++ G +I   A+K  Y  +  
Sbjct: 427 --------------MCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFE-AMKCTYQVEPG 471

Query: 492 VGN--SLITMYAKCGRIQNA-ELLFKDADPVDVISWNSLIA 529
           + +   ++ +  + GR+  A EL+ K     D I W +L+ 
Sbjct: 472 IEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLG 512



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 140/488 (28%), Positives = 241/488 (49%), Gaps = 50/488 (10%)

Query: 228 IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI--RNVVAWNAMIAAYVQRGQIEEAAR 285
           +  +++ S  + +S Y R G +  AR++FD  P+  R + +WNAM++AY +  +  +A  
Sbjct: 14  VQARSLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALL 73

Query: 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
           LF +MP+RN VS+  MI GYV+   + +AR++ D MP +N+ + T+M+ GYVQ   ++EA
Sbjct: 74  LFDQMPQRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEA 133

Query: 346 NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMD 405
            ++F ++   +VV W VMI G  +  R+D+A  LF  +  KD+V    MI GY Q+ ++D
Sbjct: 134 EKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLD 193

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
           +A ++F+EM K RN  +W  ++SG+ +N     A K+F +M +  + +  + L       
Sbjct: 194 EARELFDEM-KVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAML------- 245

Query: 466 AHLAALQLGRQIHHLAI-KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
             +   Q GR      + ++  V  +   N +I  +   G +  A ++F+     D  +W
Sbjct: 246 --MGYTQSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTW 303

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF----- 579
           N++I  +   G   EA+ LF  M  EGVA +  + I VLS C+ +  +D G ++      
Sbjct: 304 NAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVR 363

Query: 580 -ECMTEVYAIEPLVEHYA------------------------CMIDLLSRAGRLDEAFEM 614
            E   ++Y    L+  Y                          MI   S+ G  +EA  +
Sbjct: 364 SEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNV 423

Query: 615 VKGM---KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLS---ELEPQKTSCYALLSNMH 668
              M    ++P+   +  +L AC     +K G    E +    ++EP     YA + ++ 
Sbjct: 424 FHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEP-GIEHYACMVDLL 482

Query: 669 AEAGRWDE 676
             AGR DE
Sbjct: 483 GRAGRVDE 490



 Score =  105 bits (263), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 159/324 (49%), Gaps = 17/324 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF     ++   K+GRV+ A K+F  M ++N V++ +M+  Y ++GR+ +A +LFE MP 
Sbjct: 207 VFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAMPV 266

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           + +V+ N MI  +    ++  AR +F+ M   D  +W  MI  + RKG   +A  LF  +
Sbjct: 267 KWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARM 326

Query: 135 PNKEDTACWNAMVAGY---AKIGNYNEAK----KLLDAMPSKNIVSWNSMLSGYTKNGEM 187
             +     + +M++     A + + +  +    +L+ +   +++   + +++ Y K G++
Sbjct: 327 QREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDL 386

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGY 243
             A   F     +DVV WN M+ GY +    + A   F  +    V    V+++ +LS  
Sbjct: 387 VRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSAC 446

Query: 244 ARNGRMLEARRLFDQMPIR-----NVVAWNAMIAAYVQRGQIEEAARLFIEMP-ERNPVS 297
           + +G++ E   +F+ M         +  +  M+    + G+++EA  L  +MP E + + 
Sbjct: 447 SYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIV 506

Query: 298 WTTMIDGYVRIAKLDEARRLLDQM 321
           W  ++       KLD A   ++++
Sbjct: 507 WGALLGACRNHMKLDLAEVAVEKL 530


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  494 bits (1271), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 241/607 (39%), Positives = 370/607 (60%), Gaps = 6/607 (0%)

Query: 131 FDLLPNKE----DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           F L+P +       A     ++ +A++G  + A+ + D + SK + SWN++++GY  N  
Sbjct: 3   FRLIPYRSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKR 62

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARN 246
              A K F+ M ER+ +SWN ++ GYV+   +  A K F K+PE+NVVSW +M+ GY + 
Sbjct: 63  PAEAQKLFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQE 122

Query: 247 GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYV 306
           G + EA  LF +MP +NVV+W  M+   ++ G+++EA RLF  +P ++ V+ T MI G  
Sbjct: 123 GLIDEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLC 182

Query: 307 RIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG 366
              +L EAR + D+MP +N+ A T+MISGY  N ++D A ++F+ +   + V W  M+KG
Sbjct: 183 SEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKG 242

Query: 367 YAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNAL 426
           Y + GR++EA  LF+ M  K +   N MI G+    ++  A  +F++M K ++  +W+AL
Sbjct: 243 YTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQM-KEKDDGTWSAL 301

Query: 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
           I  + +  F L+AL +F LM +EG + +  ++   LS C  LA+L  GRQ+H   ++S +
Sbjct: 302 IKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHF 361

Query: 487 VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEE 546
             D++V + LITMY KCG +   + +F      D++ WNS+IAGYA +G   +A+++F E
Sbjct: 362 DLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHE 421

Query: 547 MVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAG 606
           M   G APD +TFIGVLSAC + G V  GL++FE M   Y ++   EHYACM+DLL RAG
Sbjct: 422 MFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAG 481

Query: 607 RLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSN 666
           +L+EA  +++ M ++ +A +WG LL ACR H+N+ L  IA +KL +LEP     Y LLSN
Sbjct: 482 KLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQLEPSSAGPYILLSN 541

Query: 667 MHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAE-ICNTLK 725
           ++A   RW +V ++R +M      K PGCSWIEV N++H F  G        E I   L+
Sbjct: 542 LYASQSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMFTGGGSASHPEHEMIMKKLE 601

Query: 726 TLAAQIR 732
            L A +R
Sbjct: 602 KLGASLR 608



 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 156/528 (29%), Positives = 274/528 (51%), Gaps = 47/528 (8%)

Query: 21  KITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSW 80
           +I+   + G+++ A  IF  +  K   ++N++++ Y  N R  +A+KLF++MP+RN +SW
Sbjct: 22  QISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPERNTISW 81

Query: 81  NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
           N +++GY+ N  + EAR++FDKM   ++ SW  M+  Y ++G +++A  LF  +P K + 
Sbjct: 82  NGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEK-NV 140

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER 200
             W  M+ G  + G  +EA++L D +P K++V+  +M+ G    G +  A + F+ M +R
Sbjct: 141 VSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQR 200

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
           +VV+W  M+ GY   + +D A K F+ +P++N V+W  ML GY R+GR+ EA  LF  MP
Sbjct: 201 NVVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFKAMP 260

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
           ++ V A N MI  +   G++ +A  +F +M E++  +W+ +I  Y R     EA  L   
Sbjct: 261 VKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSL 320

Query: 321 MPYK----NIAAQTAMISGYVQNKRMDEANQIFDK-IGTH---DVVCWNVMIKGYAQCGR 372
           M  +    N  +  +++S       +D   Q+  + + +H   D+   +V+I  Y +CG 
Sbjct: 321 MQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGD 380

Query: 373 MDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
           +     +F +  +KDIV WN++IAGYA                                Q
Sbjct: 381 LVTGKRVFDRFSSKDIVMWNSIIAGYA--------------------------------Q 408

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
           + F   AL++F  M   G   D  T    LSAC +   ++ G +I   ++KS Y  D   
Sbjct: 409 HGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFE-SMKSKYQVDQKT 467

Query: 493 GN--SLITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGN 536
            +   ++ +  + G++  A  L ++  PV  D I W +L++    + N
Sbjct: 468 EHYACMVDLLGRAGKLNEAMNLIENM-PVEADAIVWGALLSACRTHKN 514



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 13/160 (8%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM----PQRNL 77
           IT   K G +    ++F + S K+ V +NS+I+ YA++G    A ++F +M       + 
Sbjct: 372 ITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDE 431

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM---FRPDLFS--WALMITCYTRKGELEKARELFD 132
           +++  +++   +  KVKE  E+F+ M   ++ D  +  +A M+    R G+L +A  L +
Sbjct: 432 ITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIE 491

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYN----EAKKLLDAMPS 168
            +P + D   W A+++      N +     AKKLL   PS
Sbjct: 492 NMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQLEPS 531


>gi|359477774|ref|XP_002282129.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 691

 Score =  493 bits (1270), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 251/659 (38%), Positives = 381/659 (57%), Gaps = 36/659 (5%)

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           NL   NS I+  + N   +EA+ LFD+M + +  ++  MI  Y + G   +   LFD +P
Sbjct: 40  NLKPLNSRISDCMRNGFTEEAQMLFDEMPQRNTVTYNAMIRGYFQNGHFGEGVSLFDEMP 99

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
            + D   +N M+AG  K G+ N A ++   MP +++VSWNSM+SGY  NG +  A + F 
Sbjct: 100 ER-DIFSYNTMIAGLMKFGDINGASEIFQKMPFRDVVSWNSMISGYVSNGLIGEALRVFS 158

Query: 196 AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRL 255
            M  +DVVSWNL++ G V +  +D A +FF+++  +++ SW TM+SG A  GR++EAR L
Sbjct: 159 GMVLKDVVSWNLVIAGLVGVGKVDLAEEFFKEMGTRDIASWTTMISGLASAGRIVEARGL 218

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR 315
           F+ MP+R+V AWN MIA Y++ G IE    LF +MP+R+  SW  MI+G VR  ++ +A 
Sbjct: 219 FEDMPVRDVRAWNTMIAGYIENGCIEIGEVLFQKMPQRDFRSWNEMINGLVRNQRIQDAM 278

Query: 316 RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
           RL  +MP K   +  +++ G ++N  + EA+   +K    D V W  +I GY + G +D 
Sbjct: 279 RLFVEMPQKCRRSWNSIVFGLIRNGLIKEAHAFLEKSPFSDTVSWTNLIVGYFETGEVDT 338

Query: 376 AINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEF 435
           A+++F  M  +D   WN +I G                                  +N+ 
Sbjct: 339 AVSIFELMPARDATAWNVIIWGLG--------------------------------ENDH 366

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS 495
             + LK FV M + G   D +T    L+ C+ L  L LGRQIH    K+G+   + V N+
Sbjct: 367 GEEGLKFFVKMKEGGPFPDEATFTSVLTICSDLPTLHLGRQIHAQVTKTGFNYFVAVSNA 426

Query: 496 LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555
           ++T+YA+CG   +A LLF      D ISWNS+I G A NGN  EAI++FE+M    + P+
Sbjct: 427 MVTLYARCGNSNSALLLFSAMRSHDFISWNSIICGLAHNGNGVEAIEVFEKMRSIDIKPN 486

Query: 556 PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV 615
            +TF+GVLSACSH GLVD G   F+ M     +EP +EHY C++DLL R G +DEA   +
Sbjct: 487 HITFVGVLSACSHAGLVDQGKYYFDFMKYKCCLEPTIEHYTCIVDLLGRFGLIDEAMSFL 546

Query: 616 KGMK---IKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672
           + M+   ++  A +WG +LGACR+H+N+++G IA E++ E+EP  +  Y +L+ M+  +G
Sbjct: 547 RQMEANGVEVPASVWGAVLGACRIHKNMQVGEIAGERILEIEPHNSGVYIILAEMYLSSG 606

Query: 673 RWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           + ++ E+V V M   G +KQP CSW+EV    H FLSGD    + + +C  L  L  ++
Sbjct: 607 KREDAERVWVRMREKGVKKQPACSWMEVNGSGHVFLSGDSSHPQFSRVCGVLGLLHMEM 665



 Score =  268 bits (685), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 147/481 (30%), Positives = 243/481 (50%), Gaps = 41/481 (8%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKV 93
           +I+ +S  +  N    NS IS   +NG   +A+ LF++MPQRN V++N+MI GY  N   
Sbjct: 29  SIQSYSTSALLNLKPLNSRISDCMRNGFTEEAQMLFDEMPQRNTVTYNAMIRGYFQNGHF 88

Query: 94  KEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKI 153
            E   LFD+M   D+FS+  MI    + G++  A E+F  +P + D   WN+M++GY   
Sbjct: 89  GEGVSLFDEMPERDIFSYNTMIAGLMKFGDINGASEIFQKMPFR-DVVSWNSMISGYVSN 147

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV 213
           G   EA ++   M  K++VSWN +++G    G++ LA +FF+ M  RD+ SW  M+ G  
Sbjct: 148 GLIGEALRVFSGMVLKDVVSWNLVIAGLVGVGKVDLAEEFFKEMGTRDIASWTTMISGLA 207

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
               +  A   F+ +P ++V +W TM++GY  NG +     LF +MP R+  +WN MI  
Sbjct: 208 SAGRIVEARGLFEDMPVRDVRAWNTMIAGYIENGCIEIGEVLFQKMPQRDFRSWNEMING 267

Query: 274 YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMI 333
            V+  +I++A RLF+EMP++   SW +++ G +R   + EA   L++ P+ +  + T +I
Sbjct: 268 LVRNQRIQDAMRLFVEMPQKCRRSWNSIVFGLIRNGLIKEAHAFLEKSPFSDTVSWTNLI 327

Query: 334 SGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM---------- 383
            GY +   +D A  IF+ +   D   WNV+I G  +    +E +  F +M          
Sbjct: 328 VGYFETGEVDTAVSIFELMPARDATAWNVIIWGLGENDHGEEGLKFFVKMKEGGPFPDEA 387

Query: 384 -----------------------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
                                         N  +   N M+  YA+    + A+ +F  M
Sbjct: 388 TFTSVLTICSDLPTLHLGRQIHAQVTKTGFNYFVAVSNAMVTLYARCGNSNSALLLFSAM 447

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
            +  + +SWN++I G   N   ++A+++F  M     K +H T    LSAC+H   +  G
Sbjct: 448 -RSHDFISWNSIICGLAHNGNGVEAIEVFEKMRSIDIKPNHITFVGVLSACSHAGLVDQG 506

Query: 475 R 475
           +
Sbjct: 507 K 507



 Score =  213 bits (541), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 138/477 (28%), Positives = 230/477 (48%), Gaps = 19/477 (3%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F+ N  I  L K G +  A +IF +M  ++ V++NSMIS Y  NG + +A ++F  M  
Sbjct: 103 IFSYNTMIAGLMKFGDINGASEIFQKMPFRDVVSWNSMISGYVSNGLIGEALRVFSGMVL 162

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           +++VSWN +IAG +   KV  A E F +M   D+ SW  MI+     G + +AR LF+ +
Sbjct: 163 KDVVSWNLVIAGLVGVGKVDLAEEFFKEMGTRDIASWTTMISGLASAGRIVEARGLFEDM 222

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P + D   WN M+AGY + G     + L   MP ++  SWN M++G  +N  +  A + F
Sbjct: 223 PVR-DVRAWNTMIAGYIENGCIEIGEVLFQKMPQRDFRSWNEMINGLVRNQRIQDAMRLF 281

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
             M ++   SWN ++ G +    +  A  F +K P  + VSW  ++ GY   G +  A  
Sbjct: 282 VEMPQKCRRSWNSIVFGLIRNGLIKEAHAFLEKSPFSDTVSWTNLIVGYFETGEVDTAVS 341

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP----VSWTTMIDGYVRIAK 310
           +F+ MP R+  AWN +I    +    EE  + F++M E  P     ++T+++     +  
Sbjct: 342 IFELMPARDATAWNVIIWGLGENDHGEEGLKFFVKMKEGGPFPDEATFTSVLTICSDLPT 401

Query: 311 LDEARRLLDQMPYKN----IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG 366
           L   R++  Q+        +A   AM++ Y +    + A  +F  + +HD + WN +I G
Sbjct: 402 LHLGRQIHAQVTKTGFNYFVAVSNAMVTLYARCGNSNSALLLFSAMRSHDFISWNSIICG 461

Query: 367 YAQCGRMDEAINLFRQMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEMGKR---RN 419
            A  G   EAI +F +M + DI    +T+  +++  +    +D     F+ M  +     
Sbjct: 462 LAHNGNGVEAIEVFEKMRSIDIKPNHITFVGVLSACSHAGLVDQGKYYFDFMKYKCCLEP 521

Query: 420 TVSWNALISGFLQNEFHL--DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
           T+     I   L   F L  +A+     M   G +   S     L AC     +Q+G
Sbjct: 522 TIEHYTCIVDLL-GRFGLIDEAMSFLRQMEANGVEVPASVWGAVLGACRIHKNMQVG 577



 Score = 43.1 bits (100), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 9/123 (7%)

Query: 14  YVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP 73
           +V   N  +T   + G    A+ +FS M   + +++NS+I   A NG   +A ++FE+M 
Sbjct: 420 FVAVSNAMVTLYARCGNSNSALLLFSAMRSHDFISWNSIICGLAHNGNGVEAIEVFEKMR 479

Query: 74  ----QRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGEL 124
               + N +++  +++   H   V + +  FD M       P +  +  ++    R G +
Sbjct: 480 SIDIKPNHITFVGVLSACSHAGLVDQGKYYFDFMKYKCCLEPTIEHYTCIVDLLGRFGLI 539

Query: 125 EKA 127
           ++A
Sbjct: 540 DEA 542


>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 241/552 (43%), Positives = 355/552 (64%), Gaps = 5/552 (0%)

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWK 223
           D   + N+   N +++   K G++  A + FE M +RDVVSW  ++ GY++   ++ A  
Sbjct: 59  DFSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKT 118

Query: 224 FFQKIPE-QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEE 282
            F +    +NVV+W  ++SGY R  R+ EARRLFD MP++NV++WN MI  Y ++G I++
Sbjct: 119 LFDRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQ 178

Query: 283 AARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRM 342
           A  LF +MPERN VSW T+I  +++  ++DEA+ L ++MP +++ + T M++G  +N R+
Sbjct: 179 ALDLFEKMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRI 238

Query: 343 DEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIR 402
           D+A  +FDK+   +VV WN MI GYAQ  R+DEA  LF QM  +++ +WNTMI G+ Q  
Sbjct: 239 DDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNG 298

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK-KADHSTLACA 461
           +++ AV  F +M  + N V+W A+ISG +Q+    +ALKIF  M      K +  T    
Sbjct: 299 KLERAVDFFYKMSNK-NVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSV 357

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD--PV 519
           L AC+ LAAL  G+QIH +  K+ Y     V ++LI MY+KCG ++ A  +F D      
Sbjct: 358 LGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIGHR 417

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
           DV+SWN +IA YA +G+  +AI LF+EM   G  PD VT+I +LSACSH GLVD GLKLF
Sbjct: 418 DVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLF 477

Query: 580 ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
           E +    +I+   +H+ C++DL  RAGRL EAF+ +KG+++KP+A +W  LL  C +H +
Sbjct: 478 ENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGH 537

Query: 640 IKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
           I LG++  EKL E EP+    Y +LSN++A  G+W E   VR+ M+  G +KQPGCSWIE
Sbjct: 538 IDLGKLTAEKLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIE 597

Query: 700 VKNQIHTFLSGD 711
           V N +H F+ GD
Sbjct: 598 VGNTVHVFVVGD 609



 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 169/505 (33%), Positives = 285/505 (56%), Gaps = 22/505 (4%)

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           N+   N +I       K+ EAR++F++M   D+ SW  +IT Y + G +E+A+ LFD   
Sbjct: 65  NVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDRND 124

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
             ++   W A+V+GY +     EA++L DAMP KN++SWN+M+ GY + G +  A   FE
Sbjct: 125 AIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFE 184

Query: 196 AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRL 255
            M ER+VVSWN ++  +++   +D A + F ++PE++V+SW TM++G ++NGR+ +AR L
Sbjct: 185 KMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLL 244

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR 315
           FD+MP+RNVV+WN MI  Y Q  +++EA +LF +MPER   SW TMI G+++  KL+ A 
Sbjct: 245 FDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAV 304

Query: 316 RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWN--VMIKGYAQCGRM 373
               +M  KN+   TA+ISG+VQ+ R +EA +IF ++   + V  N    +     C ++
Sbjct: 305 DFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKL 364

Query: 374 DEAI--NLFRQMVNK-------DIVTWNTMIAGYAQIRQMDDAVKIFEEMG-KRRNTVSW 423
                     Q+++K       D+V+   +I  Y++  +++ A KIF++     R+ VSW
Sbjct: 365 AALCEGQQIHQIISKTVYQEVADVVS--ALINMYSKCGELELARKIFDDGSIGHRDVVSW 422

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
           N +I+ +  +     A+ +F  M   G + D+ T    LSAC+H   +  G ++    ++
Sbjct: 423 NGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVR 482

Query: 484 SGYVN---DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS-WNSLIAGYAINGNATE 539
              +    D F    L+ ++ + GR+Q A    K  +     S W +L+AG  ++G+  +
Sbjct: 483 DRSIKLREDHFT--CLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGH-ID 539

Query: 540 AIKLFEEMVMEGVAPDPVTFIGVLS 564
             KL  E ++E    +  T++ VLS
Sbjct: 540 LGKLTAEKLLETEPENAGTYL-VLS 563



 Score =  270 bits (691), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 143/423 (33%), Positives = 259/423 (61%), Gaps = 17/423 (4%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V   N  ITQLGK G++ EA ++F +M  ++ V++ ++I+ Y K G + +A+ LF++ 
Sbjct: 64  SNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDRN 123

Query: 73  PQ-RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
              +N+V+W ++++GY+  ++++EAR LFD M   ++ SW  MI  Y RKG +++A +LF
Sbjct: 124 DAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLF 183

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
           + +P + +   WN ++  + +    +EA++L + MP ++++SW +M++G +KNG +  A 
Sbjct: 184 EKMPER-NVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDAR 242

Query: 192 KFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLE 251
             F+ M  R+VVSWN M+ GY +   LD A+K F+++PE+ + SW TM++G+ +NG++  
Sbjct: 243 LLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLER 302

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-----SWTTMIDGYV 306
           A   F +M  +NVV W A+I+ +VQ G+ EEA ++F EM   N V     ++ +++    
Sbjct: 303 AVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACS 362

Query: 307 RIAKLDEAR---RLLDQMPYKNIA-AQTAMISGYVQNKRMDEANQIFD--KIGTHDVVCW 360
           ++A L E +   +++ +  Y+ +A   +A+I+ Y +   ++ A +IFD   IG  DVV W
Sbjct: 363 KLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIGHRDVVSW 422

Query: 361 NVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
           N MI  YA  G   +AI+LF +M       D VT+  +++  +    +D+ +K+FE + +
Sbjct: 423 NGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVR 482

Query: 417 RRN 419
            R+
Sbjct: 483 DRS 485



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 116/394 (29%), Positives = 211/394 (53%), Gaps = 32/394 (8%)

Query: 30  RVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLH 89
           R+EEA ++F  M  KN +++N+MI  YA+ G ++ A  LFE+MP+RN+VSWN++I  ++ 
Sbjct: 144 RIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEKMPERNVVSWNTVITAFMQ 203

Query: 90  NDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAG 149
             +V EA+ELF++M   D+ SW  M+   ++ G ++ AR LFD +P + +   WN M+ G
Sbjct: 204 RRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVR-NVVSWNTMIIG 262

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML 209
           YA+    +EA KL + MP + + SWN+M++G+ +NG++  A  FF  M  ++VV+W  ++
Sbjct: 263 YAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVI 322

Query: 210 DGYVELDDLDSAWKFFQKIPEQNVV-----SWVTMLSGYARNGRMLEARRLFDQMP---- 260
            G+V+    + A K F ++   N V     ++V++L   ++   + E +++   +     
Sbjct: 323 SGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVY 382

Query: 261 --IRNVVAWNAMIAAYVQRGQIEEAARLFIE--MPERNPVSWTTMIDGYVRIAKLDEARR 316
             + +VV+  A+I  Y + G++E A ++F +  +  R+ VSW  MI  Y       +A  
Sbjct: 383 QEVADVVS--ALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAIS 440

Query: 317 LLDQMPYKNI----AAQTAMISGYVQNKRMDEANQIFD--------KIGTHDVVCWNVMI 364
           L D+M             A++S       +DE  ++F+        K+      C   ++
Sbjct: 441 LFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTC---LV 497

Query: 365 KGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAG 397
             + + GR+ EA +  + + V      W  ++AG
Sbjct: 498 DLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAG 531



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 116/400 (29%), Positives = 208/400 (52%), Gaps = 29/400 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  IT   +  RV+EA ++F++M +++ +++ +M++  +KNGR++DAR LF++MP 
Sbjct: 191 VVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPV 250

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN+VSWN+MI GY  N ++ EA +LF++M   +L SW  MIT + + G+LE+A + F  +
Sbjct: 251 RNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKM 310

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN-----------SMLSGYTK 183
            NK +   W A+++G+ + G   EA K+   M + N V  N           S L+   +
Sbjct: 311 SNK-NVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCE 369

Query: 184 NGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ--KIPEQNVVSWVTMLS 241
             ++H         E  DVVS   +++ Y +  +L+ A K F    I  ++VVSW  M++
Sbjct: 370 GQQIHQIISKTVYQEVADVVS--ALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIA 427

Query: 242 GYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
            YA +G   +A  LFD+M         V + A+++A    G ++E  +LF  +     + 
Sbjct: 428 AYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIK 487

Query: 298 -----WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ-TAMISGYVQNKRMDEANQIFDK 351
                +T ++D + R  +L EA   +  +  K  A+   A+++G   +  +D      +K
Sbjct: 488 LREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDLGKLTAEK 547

Query: 352 I---GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
           +      +   + V+   YA  G+  EA  +  +M +K +
Sbjct: 548 LLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGL 587


>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35030, mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 241/552 (43%), Positives = 354/552 (64%), Gaps = 5/552 (0%)

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWK 223
           D   + N+   N +++   K G++  A + FE M +RDVVSW  ++ GY++   ++ A  
Sbjct: 59  DFSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKT 118

Query: 224 FFQKIPE-QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEE 282
            F +    +NVV+W  ++SGY R  R+ EARRLFD MP++NV++WN MI  Y ++G I++
Sbjct: 119 LFDRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQ 178

Query: 283 AARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRM 342
           A  LF  MPERN VSW T+I  +++  ++DEA+ L ++MP +++ + T M++G  +N R+
Sbjct: 179 ALDLFEXMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRI 238

Query: 343 DEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIR 402
           D+A  +FDK+   +VV WN MI GYAQ  R+DEA  LF QM  +++ +WNTMI G+ Q  
Sbjct: 239 DDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNG 298

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK-KADHSTLACA 461
           +++ AV  F +M  + N V+W A+ISG +Q+    +ALKIF  M      K +  T    
Sbjct: 299 KLERAVDFFYKMSNK-NVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSV 357

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD--PV 519
           L AC+ LAAL  G+QIH +  K+ Y     V ++LI MY+KCG ++ A  +F D      
Sbjct: 358 LGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIGHR 417

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
           DV+SWN +IA YA +G+  +AI LF+EM   G  PD VT+I +LSACSH GLVD GLKLF
Sbjct: 418 DVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLF 477

Query: 580 ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
           E +    +I+   +H+ C++DL  RAGRL EAF+ +KG+++KP+A +W  LL  C +H +
Sbjct: 478 ENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGH 537

Query: 640 IKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
           I LG++  EKL E EP+    Y +LSN++A  G+W E   VR+ M+  G +KQPGCSWIE
Sbjct: 538 IDLGKLTAEKLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIE 597

Query: 700 VKNQIHTFLSGD 711
           V N +H F+ GD
Sbjct: 598 VGNTVHVFVVGD 609



 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 169/505 (33%), Positives = 285/505 (56%), Gaps = 22/505 (4%)

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           N+   N +I       K+ EAR++F++M   D+ SW  +IT Y + G +E+A+ LFD   
Sbjct: 65  NVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDRND 124

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
             ++   W A+V+GY +     EA++L DAMP KN++SWN+M+ GY + G +  A   FE
Sbjct: 125 AIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFE 184

Query: 196 AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRL 255
            M ER+VVSWN ++  +++   +D A + F ++PE++V+SW TM++G ++NGR+ +AR L
Sbjct: 185 XMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLL 244

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR 315
           FD+MP+RNVV+WN MI  Y Q  +++EA +LF +MPER   SW TMI G+++  KL+ A 
Sbjct: 245 FDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAV 304

Query: 316 RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWN--VMIKGYAQCGRM 373
               +M  KN+   TA+ISG+VQ+ R +EA +IF ++   + V  N    +     C ++
Sbjct: 305 DFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKL 364

Query: 374 DEAI--NLFRQMVNK-------DIVTWNTMIAGYAQIRQMDDAVKIFEEMG-KRRNTVSW 423
                     Q+++K       D+V+   +I  Y++  +++ A KIF++     R+ VSW
Sbjct: 365 AALCEGQQIHQIISKTVYQEVADVVS--ALINMYSKCGELELARKIFDDGSIGHRDVVSW 422

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
           N +I+ +  +     A+ +F  M   G + D+ T    LSAC+H   +  G ++    ++
Sbjct: 423 NGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVR 482

Query: 484 SGYVN---DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS-WNSLIAGYAINGNATE 539
              +    D F    L+ ++ + GR+Q A    K  +     S W +L+AG  ++G+  +
Sbjct: 483 DRSIKLREDHFT--CLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGH-ID 539

Query: 540 AIKLFEEMVMEGVAPDPVTFIGVLS 564
             KL  E ++E    +  T++ VLS
Sbjct: 540 LGKLTAEKLLETEPENAGTYL-VLS 563



 Score =  271 bits (693), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 143/423 (33%), Positives = 259/423 (61%), Gaps = 17/423 (4%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V   N  ITQLGK G++ EA ++F +M  ++ V++ ++I+ Y K G + +A+ LF++ 
Sbjct: 64  SNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFDRN 123

Query: 73  PQ-RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
              +N+V+W ++++GY+  ++++EAR LFD M   ++ SW  MI  Y RKG +++A +LF
Sbjct: 124 DAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLF 183

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
           + +P + +   WN ++  + +    +EA++L + MP ++++SW +M++G +KNG +  A 
Sbjct: 184 EXMPER-NVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDAR 242

Query: 192 KFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLE 251
             F+ M  R+VVSWN M+ GY +   LD A+K F+++PE+ + SW TM++G+ +NG++  
Sbjct: 243 LLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLER 302

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-----SWTTMIDGYV 306
           A   F +M  +NVV W A+I+ +VQ G+ EEA ++F EM   N V     ++ +++    
Sbjct: 303 AVDFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACS 362

Query: 307 RIAKLDEAR---RLLDQMPYKNIA-AQTAMISGYVQNKRMDEANQIFD--KIGTHDVVCW 360
           ++A L E +   +++ +  Y+ +A   +A+I+ Y +   ++ A +IFD   IG  DVV W
Sbjct: 363 KLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIGHRDVVSW 422

Query: 361 NVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
           N MI  YA  G   +AI+LF +M       D VT+  +++  +    +D+ +K+FE + +
Sbjct: 423 NGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVR 482

Query: 417 RRN 419
            R+
Sbjct: 483 DRS 485



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 116/394 (29%), Positives = 210/394 (53%), Gaps = 32/394 (8%)

Query: 30  RVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLH 89
           R+EEA ++F  M  KN +++N+MI  YA+ G ++ A  LFE MP+RN+VSWN++I  ++ 
Sbjct: 144 RIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALDLFEXMPERNVVSWNTVITAFMQ 203

Query: 90  NDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAG 149
             +V EA+ELF++M   D+ SW  M+   ++ G ++ AR LFD +P + +   WN M+ G
Sbjct: 204 RRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVR-NVVSWNTMIIG 262

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML 209
           YA+    +EA KL + MP + + SWN+M++G+ +NG++  A  FF  M  ++VV+W  ++
Sbjct: 263 YAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVI 322

Query: 210 DGYVELDDLDSAWKFFQKIPEQNVV-----SWVTMLSGYARNGRMLEARRLFDQMP---- 260
            G+V+    + A K F ++   N V     ++V++L   ++   + E +++   +     
Sbjct: 323 SGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVY 382

Query: 261 --IRNVVAWNAMIAAYVQRGQIEEAARLFIE--MPERNPVSWTTMIDGYVRIAKLDEARR 316
             + +VV+  A+I  Y + G++E A ++F +  +  R+ VSW  MI  Y       +A  
Sbjct: 383 QEVADVVS--ALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAIS 440

Query: 317 LLDQMPYKNI----AAQTAMISGYVQNKRMDEANQIFD--------KIGTHDVVCWNVMI 364
           L D+M             A++S       +DE  ++F+        K+      C   ++
Sbjct: 441 LFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTC---LV 497

Query: 365 KGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAG 397
             + + GR+ EA +  + + V      W  ++AG
Sbjct: 498 DLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAG 531



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 116/400 (29%), Positives = 208/400 (52%), Gaps = 29/400 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  IT   +  RV+EA ++F++M +++ +++ +M++  +KNGR++DAR LF++MP 
Sbjct: 191 VVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPV 250

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN+VSWN+MI GY  N ++ EA +LF++M   +L SW  MIT + + G+LE+A + F  +
Sbjct: 251 RNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKM 310

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN-----------SMLSGYTK 183
            NK +   W A+++G+ + G   EA K+   M + N V  N           S L+   +
Sbjct: 311 SNK-NVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCE 369

Query: 184 NGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ--KIPEQNVVSWVTMLS 241
             ++H         E  DVVS   +++ Y +  +L+ A K F    I  ++VVSW  M++
Sbjct: 370 GQQIHQIISKTVYQEVADVVS--ALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIA 427

Query: 242 GYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
            YA +G   +A  LFD+M         V + A+++A    G ++E  +LF  +     + 
Sbjct: 428 AYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIK 487

Query: 298 -----WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ-TAMISGYVQNKRMDEANQIFDK 351
                +T ++D + R  +L EA   +  +  K  A+   A+++G   +  +D      +K
Sbjct: 488 LREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDLGKLTAEK 547

Query: 352 I---GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
           +      +   + V+   YA  G+  EA  +  +M +K +
Sbjct: 548 LLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGL 587


>gi|297744236|emb|CBI37206.3| unnamed protein product [Vitis vinifera]
          Length = 664

 Score =  484 bits (1245), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 247/641 (38%), Positives = 388/641 (60%), Gaps = 10/641 (1%)

Query: 88  LHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWN 144
            H  + K    L    +    F  + ++ C +++  L +AR + D +PN+   +   CW 
Sbjct: 22  FHVHRFKPQIPLSGTHYSKLRFDDSQILECLSQQ-RLREARHMLDEMPNRGVLDRVVCWT 80

Query: 145 AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS 204
           ++++ ++K G  +EA+ L + MP +N+V++N+MLSGY + G +  A +FFE M ER+VVS
Sbjct: 81  SLLSKFSKNGFIDEARALFEIMPERNVVTYNAMLSGYVQCGRLSDACRFFEEMPERNVVS 140

Query: 205 WNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV 264
           W  +L G      +  A + F  +PE+NVVSW +ML G  R+G++ EARR+F++MP+++ 
Sbjct: 141 WTSLLCGLANAGRIGEARELFNVMPERNVVSWNSMLVGLIRSGQLEEARRVFNEMPVKSQ 200

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
           V+WN MIA Y +  ++EEA  LF  M +RN V+WT+MI GY R   + E   L  +MP +
Sbjct: 201 VSWNVMIAGYAEHSRMEEARVLFDGMGDRNVVTWTSMISGYCRAGNVQEGYCLFQKMPER 260

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
           N+ + TAMI G+  N    EA    + +  +   C N MI GY + G++++A +LF  + 
Sbjct: 261 NVVSWTAMIGGFAWNGFYKEA---LNSMSYNTQSC-NSMINGYIRIGQLEKAQSLFDTIP 316

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
            +D ++W +MI GY  + Q+  A  +F  M   R+ V+W  ++SG +QNE   +A  +F 
Sbjct: 317 VRDKISWTSMINGYFNVGQIAKACYLFNNM-PDRDAVAWTVMVSGHVQNELFAEATYLFS 375

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG 504
            M  +G    +ST +  L A   +A L  GRQ H L +K+ +  DL + NSLI+MYAKCG
Sbjct: 376 EMRVKGVSPLNSTFSILLGAAGAMAYLDQGRQFHCLLMKTQFEFDLILQNSLISMYAKCG 435

Query: 505 RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLS 564
            I +A  +F      D+ISWNS+I G++ +G  +EA+K+FE M+  G  P+ VTF+G+LS
Sbjct: 436 EIGDAYSIFSKMISRDLISWNSMIMGFSHHGLTSEALKVFEAMLTSGTHPNSVTFLGILS 495

Query: 565 ACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNA 624
           ACSH GL++ G +LF+ M++V+AI+P +EHY CM++LL RAG+++EA E +  +  +P+ 
Sbjct: 496 ACSHAGLLNQGWELFDAMSDVFAIQPQLEHYVCMVNLLGRAGKVEEAEEFISKLPFEPDL 555

Query: 625 GIWGTLLGACRMHQ-NIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVS 683
            IWG LLG C     N  + R A ++L EL+P     + +L N+HA  G+  E  ++R  
Sbjct: 556 TIWGALLGVCGFGMINTGVARRAAKRLLELDPLNAPAHVVLCNIHASIGQRAEEGQLRKE 615

Query: 684 MEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTL 724
           M   G +K PGCSWI +K + + FLSGD    +  E+ + L
Sbjct: 616 MGLKGVRKVPGCSWILLKGEPYVFLSGDRIHPQADEMLSLL 656



 Score =  294 bits (753), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 177/580 (30%), Positives = 307/580 (52%), Gaps = 51/580 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNT----VTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           + +I +     R+ EA  +  +M  +      V + S++S ++KNG +++AR LFE MP+
Sbjct: 45  DSQILECLSQQRLREARHMLDEMPNRGVLDRVVCWTSLLSKFSKNGFIDEARALFEIMPE 104

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN+V++N+M++GY+   ++ +A   F++M   ++ SW  ++      G + +ARELF+++
Sbjct: 105 RNVVTYNAMLSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELFNVM 164

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P + +   WN+M+ G  + G   EA+++ + MP K+ VSWN M++GY ++  M  A   F
Sbjct: 165 PER-NVVSWNSMLVGLIRSGQLEEARRVFNEMPVKSQVSWNVMIAGYAEHSRMEEARVLF 223

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
           + M +R+VV+W  M+ GY    ++   +  FQK+PE+NVVSW  M+ G+A NG   EA  
Sbjct: 224 DGMGDRNVVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEA-- 281

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
             + M   N  + N+MI  Y++ GQ+E+A  LF  +P R+ +SWT+MI+GY  + ++ +A
Sbjct: 282 -LNSMSY-NTQSCNSMINGYIRIGQLEKAQSLFDTIPVRDKISWTSMINGYFNVGQIAKA 339

Query: 315 RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIK--------- 365
             L + MP ++  A T M+SG+VQN+   EA  +F ++    V   N             
Sbjct: 340 CYLFNNMPDRDAVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNSTFSILLGAAGAM 399

Query: 366 GYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
            Y   GR    + L +     D++  N++I+ YA+  ++ DA  IF +M  R + +SWN+
Sbjct: 400 AYLDQGRQFHCL-LMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKMISR-DLISWNS 457

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485
           +I GF  +    +ALK+F  M   G   +  T    LSAC+H   L  G ++        
Sbjct: 458 MIMGFSHHGLTSEALKVFEAMLTSGTHPNSVTFLGILSACSHAGLLNQGWELFDA----- 512

Query: 486 YVNDLFVGNS-------LITMYAKCGRIQNA-ELLFKDADPVDVISWNSL--IAGYAI-- 533
            ++D+F           ++ +  + G+++ A E + K     D+  W +L  + G+ +  
Sbjct: 513 -MSDVFAIQPQLEHYVCMVNLLGRAGKVEEAEEFISKLPFEPDLTIWGALLGVCGFGMIN 571

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVD 573
            G A  A K   E+       DP      L+A +HV L +
Sbjct: 572 TGVARRAAKRLLEL-------DP------LNAPAHVVLCN 598



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 128/414 (30%), Positives = 235/414 (56%), Gaps = 21/414 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V   N  ++   + GR+ +A + F +M ++N V++ S++   A  GR+ +AR+LF  MP+
Sbjct: 107 VVTYNAMLSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELFNVMPE 166

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN+VSWNSM+ G + + +++EAR +F++M      SW +MI  Y     +E+AR LFD +
Sbjct: 167 RNVVSWNSMLVGLIRSGQLEEARRVFNEMPVKSQVSWNVMIAGYAEHSRMEEARVLFDGM 226

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
            ++ +   W +M++GY + GN  E   L   MP +N+VSW +M+ G+  NG       + 
Sbjct: 227 GDR-NVVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNG------FYK 279

Query: 195 EAME--ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA 252
           EA+     +  S N M++GY+ +  L+ A   F  IP ++ +SW +M++GY   G++ +A
Sbjct: 280 EALNSMSYNTQSCNSMINGYIRIGQLEKAQSLFDTIPVRDKISWTSMINGYFNVGQIAKA 339

Query: 253 RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER--NPV--SWTTMIDGYVRI 308
             LF+ MP R+ VAW  M++ +VQ     EA  LF EM  +  +P+  +++ ++     +
Sbjct: 340 CYLFNNMPDRDAVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNSTFSILLGAAGAM 399

Query: 309 AKLDEARR---LLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMI 364
           A LD+ R+   LL +  ++ ++  Q ++IS Y +   + +A  IF K+ + D++ WN MI
Sbjct: 400 AYLDQGRQFHCLLMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKMISRDLISWNSMI 459

Query: 365 KGYAQCGRMDEAINLFRQMV----NKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            G++  G   EA+ +F  M+    + + VT+  +++  +    ++   ++F+ M
Sbjct: 460 MGFSHHGLTSEALKVFEAMLTSGTHPNSVTFLGILSACSHAGLLNQGWELFDAM 513


>gi|147859671|emb|CAN83112.1| hypothetical protein VITISV_026574 [Vitis vinifera]
          Length = 833

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 251/659 (38%), Positives = 374/659 (56%), Gaps = 48/659 (7%)

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           NL   NS I+  + N   +EA+ LFD+M + +  ++  MI  Y + G   +   LFD +P
Sbjct: 194 NLKPLNSRISDCMRNGFTEEAQMLFDEMPQRNTVTYNAMIRGYFQNGHFGEGVSLFDEMP 253

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
            + D   +N M+AG  K G+ N A ++   MP +++VSWNSM+SGY  NG +  A + F 
Sbjct: 254 ER-DIFSYNTMIAGLMKFGDINGASEIFQKMPFRDVVSWNSMISGYVSNGLIGEALRVFS 312

Query: 196 AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRL 255
            M  +DVVSWNL++ G V +  +D A +FF+++  +++ SW TM+SG A  GR++EAR L
Sbjct: 313 GMVLKDVVSWNLVIAGLVGVGKVDLAEEFFKEMGTRDIASWTTMISGLASAGRIVEARGL 372

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR 315
           F+ MP+R+V AWN MIA Y++ G IE    LF +MP+R+  SW  MI+G VR  ++  A 
Sbjct: 373 FEDMPVRDVRAWNTMIAGYLENGCIEIGEVLFQKMPQRDFRSWNEMINGLVRNQRIQNAM 432

Query: 316 RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
           RL  +MP K   +  +++ G ++N  + EA+   +K    D V W  +I GY + G +D 
Sbjct: 433 RLFVEMPQKCRRSWNSIVFGLIRNGLIKEAHAFLEKSPFSDTVSWTNLIVGYFETGEVDT 492

Query: 376 AINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEF 435
           A+++F  M  +D   WN +I G                                  +N+ 
Sbjct: 493 AVSIFELMPARDATAWNVIIWGLG--------------------------------ENDH 520

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS 495
             + LK FV M + G   D +T    L+ C+ L  L LGRQIH    K+G+   + V N+
Sbjct: 521 GEEGLKFFVKMKEGGPFPDEATFTSVLTICSDLPTLHLGRQIHAQVTKTGFNYFVAVSNA 580

Query: 496 LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555
           ++T+YA+CG   +A LLF      DVISWNS+I G A NGN  EAI++FE+M    + P+
Sbjct: 581 MVTLYARCGNSNSALLLFSSMTSHDVISWNSIICGLAHNGNGVEAIEMFEKMRSTDIKPN 640

Query: 556 PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV 615
            +TF+GVLSACSH GLVD G   F+ M     +EP +EHY C++DLL R G +DEA   +
Sbjct: 641 RITFVGVLSACSHAGLVDQGKYYFDFMKYKCCLEPTIEHYTCIVDLLGRFGLIDEAMSFL 700

Query: 616 KGMK---IKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672
           + M+   ++  A +WG +LGACR+H+NI++G IA E++ E+EP            H   G
Sbjct: 701 RQMEANGVEVPASVWGAVLGACRIHKNIQVGEIAGERILEIEP------------HNFCG 748

Query: 673 RWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           + ++ E+V V M   G +KQP CSW+EV    H FLSGD    + + +C  L  L  ++
Sbjct: 749 KREDAERVWVRMREKGVKKQPACSWMEVNGSGHVFLSGDSSHPQFSRVCGVLGLLHMEM 807



 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 146/481 (30%), Positives = 240/481 (49%), Gaps = 41/481 (8%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKV 93
           +I+ +S  +  N    NS IS   +NG   +A+ LF++MPQRN V++N+MI GY  N   
Sbjct: 183 SIQSYSTSALLNLKPLNSRISDCMRNGFTEEAQMLFDEMPQRNTVTYNAMIRGYFQNGHF 242

Query: 94  KEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKI 153
            E   LFD+M   D+FS+  MI    + G++  A E+F  +P + D   WN+M++GY   
Sbjct: 243 GEGVSLFDEMPERDIFSYNTMIAGLMKFGDINGASEIFQKMPFR-DVVSWNSMISGYVSN 301

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV 213
           G   EA ++   M  K++VSWN +++G    G++ LA +FF+ M  RD+ SW  M+ G  
Sbjct: 302 GLIGEALRVFSGMVLKDVVSWNLVIAGLVGVGKVDLAEEFFKEMGTRDIASWTTMISGLA 361

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
               +  A   F+ +P ++V +W TM++GY  NG +     LF +MP R+  +WN MI  
Sbjct: 362 SAGRIVEARGLFEDMPVRDVRAWNTMIAGYLENGCIEIGEVLFQKMPQRDFRSWNEMING 421

Query: 274 YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMI 333
            V+  +I+ A RLF+EMP++   SW +++ G +R   + EA   L++ P+ +  + T +I
Sbjct: 422 LVRNQRIQNAMRLFVEMPQKCRRSWNSIVFGLIRNGLIKEAHAFLEKSPFSDTVSWTNLI 481

Query: 334 SGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM---------- 383
            GY +   +D A  IF+ +   D   WNV+I G  +    +E +  F +M          
Sbjct: 482 VGYFETGEVDTAVSIFELMPARDATAWNVIIWGLGENDHGEEGLKFFVKMKEGGPFPDEA 541

Query: 384 -----------------------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
                                         N  +   N M+  YA+    + A+ +F  M
Sbjct: 542 TFTSVLTICSDLPTLHLGRQIHAQVTKTGFNYFVAVSNAMVTLYARCGNSNSALLLFSSM 601

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
               + +SWN++I G   N   ++A+++F  M     K +  T    LSAC+H   +  G
Sbjct: 602 -TSHDVISWNSIICGLAHNGNGVEAIEMFEKMRSTDIKPNRITFVGVLSACSHAGLVDQG 660

Query: 475 R 475
           +
Sbjct: 661 K 661



 Score =  250 bits (639), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 137/435 (31%), Positives = 226/435 (51%), Gaps = 40/435 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N +I+   ++G  EEA  +F +M Q+NTVTYN+MI  Y +NG   +   LF++MP+R++ 
Sbjct: 199 NSRISDCMRNGFTEEAQMLFDEMPQRNTVTYNAMIRGYFQNGHFGEGVSLFDEMPERDIF 258

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           S+N+MIAG +    +  A E+F KM   D+ SW  MI+ Y   G + +A  +F  +  K 
Sbjct: 259 SYNTMIAGLMKFGDINGASEIFQKMPFRDVVSWNSMISGYVSNGLIGEALRVFSGMVLK- 317

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           D   WN ++AG   +G  + A++    M +++I SW +M+SG    G +  A   FE M 
Sbjct: 318 DVVSWNLVIAGLVGVGKVDLAEEFFKEMGTRDIASWTTMISGLASAGRIVEARGLFEDMP 377

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
            RDV +WN M+ GY+E   ++     FQK+P+++  SW  M++G  RN R+  A RLF +
Sbjct: 378 VRDVRAWNTMIAGYLENGCIEIGEVLFQKMPQRDFRSWNEMINGLVRNQRIQNAMRLFVE 437

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
           MP +   +WN+++   ++ G I+EA     + P  + VSWT +I GY    ++D A  + 
Sbjct: 438 MPQKCRRSWNSIVFGLIRNGLIKEAHAFLEKSPFSDTVSWTNLIVGYFETGEVDTAVSIF 497

Query: 319 DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG------------------------- 353
           + MP ++  A   +I G  +N   +E  + F K+                          
Sbjct: 498 ELMPARDATAWNVIIWGLGENDHGEEGLKFFVKMKEGGPFPDEATFTSVLTICSDLPTLH 557

Query: 354 --------------THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYA 399
                          + V   N M+  YA+CG  + A+ LF  M + D+++WN++I G A
Sbjct: 558 LGRQIHAQVTKTGFNYFVAVSNAMVTLYARCGNSNSALLLFSSMTSHDVISWNSIICGLA 617

Query: 400 QIRQMDDAVKIFEEM 414
                 +A+++FE+M
Sbjct: 618 HNGNGVEAIEMFEKM 632



 Score =  215 bits (547), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 139/477 (29%), Positives = 231/477 (48%), Gaps = 19/477 (3%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F+ N  I  L K G +  A +IF +M  ++ V++NSMIS Y  NG + +A ++F  M  
Sbjct: 257 IFSYNTMIAGLMKFGDINGASEIFQKMPFRDVVSWNSMISGYVSNGLIGEALRVFSGMVL 316

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           +++VSWN +IAG +   KV  A E F +M   D+ SW  MI+     G + +AR LF+ +
Sbjct: 317 KDVVSWNLVIAGLVGVGKVDLAEEFFKEMGTRDIASWTTMISGLASAGRIVEARGLFEDM 376

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P + D   WN M+AGY + G     + L   MP ++  SWN M++G  +N  +  A + F
Sbjct: 377 PVR-DVRAWNTMIAGYLENGCIEIGEVLFQKMPQRDFRSWNEMINGLVRNQRIQNAMRLF 435

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
             M ++   SWN ++ G +    +  A  F +K P  + VSW  ++ GY   G +  A  
Sbjct: 436 VEMPQKCRRSWNSIVFGLIRNGLIKEAHAFLEKSPFSDTVSWTNLIVGYFETGEVDTAVS 495

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP----VSWTTMIDGYVRIAK 310
           +F+ MP R+  AWN +I    +    EE  + F++M E  P     ++T+++     +  
Sbjct: 496 IFELMPARDATAWNVIIWGLGENDHGEEGLKFFVKMKEGGPFPDEATFTSVLTICSDLPT 555

Query: 311 LDEARRLLDQMPYKN----IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG 366
           L   R++  Q+        +A   AM++ Y +    + A  +F  + +HDV+ WN +I G
Sbjct: 556 LHLGRQIHAQVTKTGFNYFVAVSNAMVTLYARCGNSNSALLLFSSMTSHDVISWNSIICG 615

Query: 367 YAQCGRMDEAINLFRQMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEMGKR---RN 419
            A  G   EAI +F +M + DI    +T+  +++  +    +D     F+ M  +     
Sbjct: 616 LAHNGNGVEAIEMFEKMRSTDIKPNRITFVGVLSACSHAGLVDQGKYYFDFMKYKCCLEP 675

Query: 420 TVSWNALISGFLQNEFHL--DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
           T+     I   L   F L  +A+     M   G +   S     L AC     +Q+G
Sbjct: 676 TIEHYTCIVDLL-GRFGLIDEAMSFLRQMEANGVEVPASVWGAVLGACRIHKNIQVG 731



 Score = 44.7 bits (104), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 59/123 (47%), Gaps = 9/123 (7%)

Query: 14  YVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP 73
           +V   N  +T   + G    A+ +FS M+  + +++NS+I   A NG   +A ++FE+M 
Sbjct: 574 FVAVSNAMVTLYARCGNSNSALLLFSSMTSHDVISWNSIICGLAHNGNGVEAIEMFEKMR 633

Query: 74  ----QRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGEL 124
               + N +++  +++   H   V + +  FD M       P +  +  ++    R G +
Sbjct: 634 STDIKPNRITFVGVLSACSHAGLVDQGKYYFDFMKYKCCLEPTIEHYTCIVDLLGRFGLI 693

Query: 125 EKA 127
           ++A
Sbjct: 694 DEA 696


>gi|225428117|ref|XP_002278375.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial [Vitis vinifera]
          Length = 681

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 240/608 (39%), Positives = 367/608 (60%), Gaps = 54/608 (8%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N  ++   + G  NEA+ L DAMP +NIV+WNSM++GY +  EM  A K F+ M +RDVV
Sbjct: 71  NKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEMPDRDVV 130

Query: 204 SWNLMLDGYVELDD--LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
           SWNLM+ GYV      ++     F ++PE++ VSW TM+SGY R+GRM EA +LFD M  
Sbjct: 131 SWNLMISGYVSCQGRWVEEGRHLFDEMPERDCVSWNTMISGYTRSGRMDEALQLFDSMQE 190

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL--- 318
           RNVV+WNAM+  ++Q G +E A   F+ MPER+  S + ++ G ++  +LDEA+R+L   
Sbjct: 191 RNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQNGELDEAKRILLTS 250

Query: 319 ----------------------------------DQMPY------------KNIAAQTAM 332
                                             DQ+P+            +N+ +  +M
Sbjct: 251 RRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVVSWNSM 310

Query: 333 ISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWN 392
           I  YV+ + +  A  +FD++   D + WN MI GY +   M+EA  LF++M N D +TWN
Sbjct: 311 IMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEMPNPDTLTWN 370

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
           +MI+G+AQ   ++ A  +F  +  ++N VSWN++I+G+  N  +  A +++  M  +G+K
Sbjct: 371 SMISGFAQKGNLELARALFATI-PQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEK 429

Query: 453 ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512
            D  TL+  LS C+  AAL LG QIH    K+  + D+ + NSLITMY++CG I  A  +
Sbjct: 430 PDRHTLSSVLSVCSGFAALHLGMQIHQQITKT-VIPDIPINNSLITMYSRCGAIVEARTI 488

Query: 513 FKDAD-PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
           F +     +VISWN++I GYA +G A +A++LFE M    V P  +TFI VL+AC+H G 
Sbjct: 489 FDEVKLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFISVLNACAHAGF 548

Query: 572 VDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           V  G   F+ M   + IEP +EH+A ++D++ R G+L+EA +++  M  +P+  +WG LL
Sbjct: 549 VKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINSMPFEPDKAVWGALL 608

Query: 632 GACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQK 691
           GACR+H N++L R+A E L +LEP+ ++ Y LL NM+A+ G+WD   ++R+ ME +  +K
Sbjct: 609 GACRVHNNVELARVAAEALMKLEPESSAPYVLLHNMYADVGQWDNATEMRMMMERNNIRK 668

Query: 692 QPGCSWIE 699
           QPG SW++
Sbjct: 669 QPGYSWVD 676



 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 196/600 (32%), Positives = 317/600 (52%), Gaps = 67/600 (11%)

Query: 44  KNTV-----TYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARE 98
           KN+V     T N  IS   +NGR+N+AR LF+ MPQRN+V+WNSMI GY+   ++ +AR+
Sbjct: 60  KNSVSLDLYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARK 119

Query: 99  LFDKMFRPDLFSWALMITCYTR-KGE-LEKARELFDLLPNKEDTACWNAMVAGYAKIGNY 156
           LFD+M   D+ SW LMI+ Y   +G  +E+ R LFD +P + D   WN M++GY + G  
Sbjct: 120 LFDEMPDRDVVSWNLMISGYVSCQGRWVEEGRHLFDEMPER-DCVSWNTMISGYTRSGRM 178

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELD 216
           +EA +L D+M  +N+VSWN+M++G+ +NG++  A +FF  M ERD  S + ++ G ++  
Sbjct: 179 DEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQNG 238

Query: 217 DLDSAWKFFQKIPEQN------VVSWVTMLSGYARNGRMLEARRLFDQMPI--------- 261
           +LD A +       Q+      V ++  +L+GY +NGR+ +AR+LFDQ+P          
Sbjct: 239 ELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGG 298

Query: 262 ---RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
              RNVV+WN+MI  YV+   I  A  LF +M ER+ +SW TMI GYVR++ ++EA  L 
Sbjct: 299 RFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLF 358

Query: 319 DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
            +MP  +     +MISG+ Q   ++ A  +F  I   ++V WN MI GY   G    A  
Sbjct: 359 QEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGATE 418

Query: 379 LFRQM--------------------------------------VNKDIVTWNTMIAGYAQ 400
           L+RQM                                      V  DI   N++I  Y++
Sbjct: 419 LYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVIPDIPINNSLITMYSR 478

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
              + +A  IF+E+  ++  +SWNA+I G+  + F  DAL++F LM +   +  + T   
Sbjct: 479 CGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFIS 538

Query: 461 ALSACAHLAALQLGR-QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA-ELLFKDADP 518
            L+ACAH   ++ GR     +A + G    +    SL+ +  + G+++ A +L+      
Sbjct: 539 VLNACAHAGFVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINSMPFE 598

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
            D   W +L+    ++ N  E  ++  E +M+        ++ + +  + VG  D   ++
Sbjct: 599 PDKAVWGALLGACRVHNN-VELARVAAEALMKLEPESSAPYVLLHNMYADVGQWDNATEM 657



 Score =  235 bits (599), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 125/379 (32%), Positives = 219/379 (57%), Gaps = 27/379 (7%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHN 90
           VEE   +F +M +++ V++N+MIS Y ++GR+++A +LF+ M +RN+VSWN+M+ G+L N
Sbjct: 147 VEEGRHLFDEMPERDCVSWNTMISGYTRSGRMDEALQLFDSMQERNVVSWNAMVTGFLQN 206

Query: 91  DKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKED------TACWN 144
             V+ A E F +M   D  S + ++    + GEL++A+ +  L   ++D         +N
Sbjct: 207 GDVERAIEFFMRMPERDSASLSALVAGLIQNGELDEAKRIL-LTSRRQDDDKGDLVHAYN 265

Query: 145 AMVAGYAKIGNYNEAKKLLDAMP------------SKNIVSWNSMLSGYTKNGEMHLASK 192
            ++AGY + G  ++A++L D +P             +N+VSWNSM+  Y K  ++  A  
Sbjct: 266 ILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARV 325

Query: 193 FFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA 252
            F+ M+ERD +SWN M+ GYV + D++ AW  FQ++P  + ++W +M+SG+A+ G +  A
Sbjct: 326 LFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQKGNLELA 385

Query: 253 RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PERNPVSWT-TMIDGY 305
           R LF  +P +N+V+WN+MIA Y   G  + A  L+ +M      P+R+ +S   ++  G+
Sbjct: 386 RALFATIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGF 445

Query: 306 VRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH-DVVCWNVMI 364
             +    +  + + +    +I    ++I+ Y +   + EA  IFD++    +V+ WN MI
Sbjct: 446 AALHLGMQIHQQITKTVIPDIPINNSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMI 505

Query: 365 KGYAQCGRMDEAINLFRQM 383
            GYA  G   +A+ LF  M
Sbjct: 506 GGYAFHGFAADALELFELM 524



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 197/413 (47%), Gaps = 83/413 (20%)

Query: 10  NKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMS------------QKNTVTYNSMISAYA 57
           +KG  V   N  +   G++GRV++A ++F Q+             ++N V++NSMI  Y 
Sbjct: 256 DKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYV 315

Query: 58  KNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITC 117
           K   +  AR LF+QM +R+ +SWN+MI+GY+    ++EA  LF +M  PD  +W  MI+ 
Sbjct: 316 KARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISG 375

Query: 118 YTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------PSKNI 171
           + +KG LE AR LF  +P K +   WN+M+AGY   G+Y  A +L   M      P ++ 
Sbjct: 376 FAQKGNLELARALFATIPQK-NLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHT 434

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ 231
           +S  S+LS  +    +HL  +  + + +                            IP  
Sbjct: 435 LS--SVLSVCSGFAALHLGMQIHQQITK-----------------------TVIPDIPIN 469

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
           N  S +TM   Y+R G ++EAR +FD++ + + V++WNAMI  Y   G   +A  LF E+
Sbjct: 470 N--SLITM---YSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELF-EL 523

Query: 291 PER---NP--VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
            +R    P  +++ ++++       + E R     M +K++A +  +        R++  
Sbjct: 524 MKRLKVRPTYITFISVLNACAHAGFVKEGR-----MHFKSMACEFGI------EPRIEHF 572

Query: 346 NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAG 397
             + D +G H               G+++EA++L   M    D   W  ++  
Sbjct: 573 ASLVDIVGRH---------------GQLEEAMDLINSMPFEPDKAVWGALLGA 610


>gi|224126355|ref|XP_002329533.1| predicted protein [Populus trichocarpa]
 gi|222870242|gb|EEF07373.1| predicted protein [Populus trichocarpa]
          Length = 693

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 257/680 (37%), Positives = 386/680 (56%), Gaps = 51/680 (7%)

Query: 81  NSMIAGYLHNDKVKEARELFDKMFRPDLFS----WALMITCYTRKGELEKARELFDLLPN 136
           +S +   L   K+++AR L DK       S    W  ++T Y+R G ++++R LFD++P 
Sbjct: 2   DSQLLCMLSQQKLQQARNLLDKFPERSRHSRIAHWTSLLTKYSRIGFIDESRVLFDIMPE 61

Query: 137 KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEA 196
           + +   +N M++GY + G  +EA+ L + MP +N+VSW SML G    G +  A + F+ 
Sbjct: 62  R-NIVSYNVMLSGYLQCGRLSEARGLFEEMPERNVVSWTSMLCGLADAGRICEARELFKE 120

Query: 197 MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF 256
           M ER+VVSWN M+ G ++ +DL+ A + F +IPE+NVVSW  M+ G+A NG+M EAR LF
Sbjct: 121 MPERNVVSWNAMVAGLIKNEDLEEARRVFDEIPEKNVVSWNAMIKGFAENGKMEEARVLF 180

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYV---------- 306
           ++M  RNV+ W  MIA Y + G + EA   F  +PERN VSWT MI G+           
Sbjct: 181 EEMEDRNVITWTTMIAGYCRIGDVREAYCFFCRIPERNVVSWTAMISGFTWNGYYGEALL 240

Query: 307 -------------------------------RIAKLDEARRLLDQMPYKNIAAQTA--MI 333
                                           + K   A+ +++ + Y++   + A  +I
Sbjct: 241 LFLEMKRRSNIAPNGETFISLAYACAGMRFHHLGKQLHAQLIINGLEYEDYDGRIAKSLI 300

Query: 334 SGYVQNKRMDEANQIFDK-IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWN 392
             Y     MD A+ +F+K + +H V   N MI GY + G++++A  LF  +  +D +TW 
Sbjct: 301 HMYSLFGAMDYAHYVFNKNLNSHAVQSCNHMINGYTRIGQVEKARELFDTIPARDNITWT 360

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
           +MI GY  I  + +A  +FE M   +++V+W ++ISG +QNE  L A    + M   G  
Sbjct: 361 SMIVGYFDIGNVSEACYLFENM-PDKDSVAWTSMISGLVQNELFLKATSFLLRMLAHGAP 419

Query: 453 ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512
              ST A    A   +A L  GRQ+H++ +K+    DL + NSLI+MYAKCG I +A  +
Sbjct: 420 PLSSTYAILFGAAGAIAHLDFGRQLHNMLMKTLSDCDLILSNSLISMYAKCGEIHDAYSI 479

Query: 513 FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
           F +    D+ISWN++I G A +  A E +K+FE M+  G  P+ VTF+G+LSACSH GLV
Sbjct: 480 FTNMIYRDLISWNTMIMGLAHHALANETLKVFETMLQSGTRPNSVTFLGILSACSHAGLV 539

Query: 573 DGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLG 632
             G KLF+ M +VYAI+P +EHY  MI+LL RAG++ EA E++ G+  + N  IWG LLG
Sbjct: 540 SQGCKLFKAMRDVYAIQPGLEHYISMINLLGRAGKVREAEELILGLPFETNHAIWGALLG 599

Query: 633 ACRM-HQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQK 691
            C +  +N  + + A  +L EL+P     +  L N++A  G+  E +K+R  M   G +K
Sbjct: 600 VCGVAEKNADIAQHAARRLLELDPLNAPAHVALCNIYAACGKHIEEQKLRKEMGLKGVRK 659

Query: 692 QPGCSWIEVKNQIHTFLSGD 711
            PGCSWI +   +  FLSGD
Sbjct: 660 VPGCSWIVLNGNVCVFLSGD 679



 Score =  253 bits (645), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 170/605 (28%), Positives = 296/605 (48%), Gaps = 70/605 (11%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           + + N  ++   + GR+ EA  +F +M ++N V++ SM+   A  GR+ +AR+LF++MP+
Sbjct: 64  IVSYNVMLSGYLQCGRLSEARGLFEEMPERNVVSWTSMLCGLADAGRICEARELFKEMPE 123

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN+VSWN+M+AG + N+ ++EAR +FD++   ++ SW  MI  +   G++E+AR LF+ +
Sbjct: 124 RNVVSWNAMVAGLIKNEDLEEARRVFDEIPEKNVVSWNAMIKGFAENGKMEEARVLFEEM 183

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
            ++ +   W  M+AGY +IG+  EA      +P +N+VSW +M+SG+T NG    A   F
Sbjct: 184 EDR-NVITWTTMIAGYCRIGDVREAYCFFCRIPERNVVSWTAMISGFTWNGYYGEALLLF 242

Query: 195 EAMEERDVVSWN--------------------------LMLDGYVELDDLD--------- 219
             M+ R  ++ N                          L+++G +E +D D         
Sbjct: 243 LEMKRRSNIAPNGETFISLAYACAGMRFHHLGKQLHAQLIING-LEYEDYDGRIAKSLIH 301

Query: 220 ----------SAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNA 269
                     + + F + +    V S   M++GY R G++ +AR LFD +P R+ + W +
Sbjct: 302 MYSLFGAMDYAHYVFNKNLNSHAVQSCNHMINGYTRIGQVEKARELFDTIPARDNITWTS 361

Query: 270 MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM------PY 323
           MI  Y   G + EA  LF  MP+++ V+WT+MI G V+     +A   L +M      P 
Sbjct: 362 MIVGYFDIGNVSEACYLFENMPDKDSVAWTSMISGLVQNELFLKATSFLLRMLAHGAPPL 421

Query: 324 KNIAAQTAMISGYVQNKRMDEA--NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
            +  A     +G + +        N +   +   D++  N +I  YA+CG + +A ++F 
Sbjct: 422 SSTYAILFGAAGAIAHLDFGRQLHNMLMKTLSDCDLILSNSLISMYAKCGEIHDAYSIFT 481

Query: 382 QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLD 438
            M+ +D+++WNTMI G A     ++ +K+FE M   G R N+V++  ++S          
Sbjct: 482 NMIYRDLISWNTMIMGLAHHALANETLKVFETMLQSGTRPNSVTFLGILSACSHAGLVSQ 541

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
             K+F  M      A    L   +S    L      R+   L +   +  +  +  +L+ 
Sbjct: 542 GCKLFKAMRD--VYAIQPGLEHYISMINLLGRAGKVREAEELILGLPFETNHAIWGALLG 599

Query: 499 MYAKCGR-------IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
           +   CG         Q+A     + DP++  +  +L   YA  G   E  KL +EM ++G
Sbjct: 600 V---CGVAEKNADIAQHAARRLLELDPLNAPAHVALCNIYAACGKHIEEQKLRKEMGLKG 656

Query: 552 VAPDP 556
           V   P
Sbjct: 657 VRKVP 661


>gi|255575746|ref|XP_002528772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531775|gb|EEF33594.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 254/660 (38%), Positives = 381/660 (57%), Gaps = 49/660 (7%)

Query: 111 WALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN 170
           W  +++ Y+R G +++AR LFD++P + +   +NA+++G  + G  +EA KL + MP +N
Sbjct: 13  WTSLLSKYSRSGFVDEARALFDIMPER-NAVSYNALLSGLLQCGRLSEAMKLFEEMPERN 71

Query: 171 IVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPE 230
           +VSW SML G    G++  A   FE M +R+VVSWN M+ G +   DL++A   F + P 
Sbjct: 72  VVSWTSMLCGLADAGKICEAKSLFEEMPDRNVVSWNAMIVGLIRNGDLEAARMVFDESPV 131

Query: 231 QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
           +N  SW  M++GYA NGRM EAR LFD+M  RNV+ W +M++ Y + G++EE   LF  M
Sbjct: 132 KNAASWNGMIAGYAENGRMEEARALFDEMEDRNVITWTSMVSGYCRAGEVEEGYHLFRTM 191

Query: 291 PERNPVSWTTMIDGYV-----------------------------------------RIA 309
           P+RN VSWT MI G+                                          R+ 
Sbjct: 192 PKRNIVSWTAMIGGFTWNGFYEDALLLFLEMKRGADITPNIETFISLAYACAGLGFHRLG 251

Query: 310 KLDEARRL---LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV-CWNVMIK 365
           K   AR +   LD   Y    ++  +I  Y     MD A+ IF+K   + VV   N MI 
Sbjct: 252 KQLHARLITEGLDNDDYDGRLSK-GLICMYSSIGFMDYAHYIFNKNSNYYVVQSCNYMIN 310

Query: 366 GYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
           GY + G +D+A NLF  M  +D +TW +MI GY  I  + +A  +F  M   ++ V+W  
Sbjct: 311 GYIRIGLLDKAQNLFDTMPVRDKITWTSMIDGYLVIGNVSEACSLFLYM-PEKDAVAWTT 369

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485
           +ISG ++NE   +A  +F  M  +G +   ST A    A   +A+L  GRQ+H +  K+ 
Sbjct: 370 MISGHVRNELFAEATYLFSEMLTQGVRPLSSTYAILFGAAGAVASLDQGRQLHAMLTKTL 429

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
             NDL + NSLI+MYAKCG I+NA  +F      D+ISWNS+I G++ +G A EA+++FE
Sbjct: 430 SDNDLILENSLISMYAKCGEIRNAYRIFSQMISHDLISWNSMIMGFSHHGLANEALEVFE 489

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRA 605
            MV  G  P+ VTF+GVLSACSH GL++ G ++F  M++V+A++P +EHY CM++LL RA
Sbjct: 490 AMVDSGTHPNSVTFLGVLSACSHAGLINQGWEIFNAMSDVFAVQPGLEHYICMVNLLGRA 549

Query: 606 GRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQ-NIKLGRIAVEKLSELEPQKTSCYALL 664
           G+L EA E++ G+ ++ N  IWG LLG C   + N  + + A  ++ EL+P     + LL
Sbjct: 550 GKLKEAEELILGLPLERNHAIWGALLGVCSFSEKNADIAKRAATRILELDPLNAPAHVLL 609

Query: 665 SNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTL 724
            N++A +G+  E  K+R  M   G +K PGCSWI +  ++H FLSGD  + +  ++ + L
Sbjct: 610 CNIYAASGQHIEEHKLRKEMGLKGVKKVPGCSWIVLNGRVHVFLSGDKPRLQAKDMLSLL 669



 Score =  276 bits (705), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 187/643 (29%), Positives = 316/643 (49%), Gaps = 99/643 (15%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           +++  +SG V+EA  +F  M ++N V+YN+++S   + GR+++A KLFE+MP+RN+VSW 
Sbjct: 17  LSKYSRSGFVDEARALFDIMPERNAVSYNALLSGLLQCGRLSEAMKLFEEMPERNVVSWT 76

Query: 82  SMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTA 141
           SM+ G     K+ EA+ LF++M   ++ SW  MI    R G+LE AR +FD  P K + A
Sbjct: 77  SMLCGLADAGKICEAKSLFEEMPDRNVVSWNAMIVGLIRNGDLEAARMVFDESPVK-NAA 135

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
            WN M+AGYA+ G   EA+ L D M  +N+++W SM+SGY + GE+      F  M +R+
Sbjct: 136 SWNGMIAGYAENGRMEEARALFDEMEDRNVITWTSMVSGYCRAGEVEEGYHLFRTMPKRN 195

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKIPE-----QNVVSWVTMLS-----GYARNGRMLE 251
           +VSW  M+ G+      + A   F ++        N+ +++++       G+ R G+ L 
Sbjct: 196 IVSWTAMIGGFTWNGFYEDALLLFLEMKRGADITPNIETFISLAYACAGLGFHRLGKQLH 255

Query: 252 ARRLFDQMP---------------------------IRN-------VVAWNAMIAAYVQR 277
           AR + + +                            I N       V + N MI  Y++ 
Sbjct: 256 ARLITEGLDNDDYDGRLSKGLICMYSSIGFMDYAHYIFNKNSNYYVVQSCNYMINGYIRI 315

Query: 278 GQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYV 337
           G +++A  LF  MP R+ ++WT+MIDGY+ I  + EA  L   MP K+  A T MISG+V
Sbjct: 316 GLLDKAQNLFDTMPVRDKITWTSMIDGYLVIGNVSEACSLFLYMPEKDAVAWTTMISGHV 375

Query: 338 QNKRMDEANQIFDKIGTHDV----VCWNVMIKGYAQCGRMDEAINLF----RQMVNKDIV 389
           +N+   EA  +F ++ T  V      + ++         +D+   L     + + + D++
Sbjct: 376 RNELFAEATYLFSEMLTQGVRPLSSTYAILFGAAGAVASLDQGRQLHAMLTKTLSDNDLI 435

Query: 390 TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
             N++I+ YA+  ++ +A +IF +M    + +SWN++I GF  +    +AL++F  M   
Sbjct: 436 LENSLISMYAKCGEIRNAYRIFSQM-ISHDLISWNSMIMGFSHHGLANEALEVFEAMVDS 494

Query: 450 GKKADHSTLACALSACAHLAALQLGRQIHH-----LAIKSGYVNDLFVGNSLITMYAKCG 504
           G   +  T    LSAC+H   +  G +I +      A++ G  + +     ++ +  + G
Sbjct: 495 GTHPNSVTFLGVLSACSHAGLINQGWEIFNAMSDVFAVQPGLEHYI----CMVNLLGRAG 550

Query: 505 RIQNAELLF-----------------------KDA-------------DPVDVISWNSLI 528
           +++ AE L                        K+A             DP++  +   L 
Sbjct: 551 KLKEAEELILGLPLERNHAIWGALLGVCSFSEKNADIAKRAATRILELDPLNAPAHVLLC 610

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
             YA +G   E  KL +EM ++GV   P     VL+   HV L
Sbjct: 611 NIYAASGQHIEEHKLRKEMGLKGVKKVPGCSWIVLNGRVHVFL 653



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 124/424 (29%), Positives = 217/424 (51%), Gaps = 24/424 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  I  L ++G +E A  +F +   KN  ++N MI+ YA+NGR+ +AR LF++M  
Sbjct: 103 VVSWNAMIVGLIRNGDLEAARMVFDESPVKNAASWNGMIAGYAENGRMEEARALFDEMED 162

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF--- 131
           RN+++W SM++GY    +V+E   LF  M + ++ SW  MI  +T  G  E A  LF   
Sbjct: 163 RNVITWTSMVSGYCRAGEVEEGYHLFRTMPKRNIVSWTAMIGGFTWNGFYEDALLLFLEM 222

Query: 132 ----DLLPNKED--TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNS--MLSGYTK 183
               D+ PN E   +  +     G+ ++G    A+ + + + + +     S  ++  Y+ 
Sbjct: 223 KRGADITPNIETFISLAYACAGLGFHRLGKQLHARLITEGLDNDDYDGRLSKGLICMYSS 282

Query: 184 NGEMHLASKFFEAMEERDVV-SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG 242
            G M  A   F       VV S N M++GY+ +  LD A   F  +P ++ ++W +M+ G
Sbjct: 283 IGFMDYAHYIFNKNSNYYVVQSCNYMINGYIRIGLLDKAQNLFDTMPVRDKITWTSMIDG 342

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PVS--W 298
           Y   G + EA  LF  MP ++ VAW  MI+ +V+     EA  LF EM  +   P+S  +
Sbjct: 343 YLVIGNVSEACSLFLYMPEKDAVAWTTMISGHVRNELFAEATYLFSEMLTQGVRPLSSTY 402

Query: 299 TTMIDGYVRIAKLDEARR----LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
             +      +A LD+ R+    L   +   ++  + ++IS Y +   +  A +IF ++ +
Sbjct: 403 AILFGAAGAVASLDQGRQLHAMLTKTLSDNDLILENSLISMYAKCGEIRNAYRIFSQMIS 462

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVTWNTMIAGYAQIRQMDDAVKI 410
           HD++ WN MI G++  G  +EA+ +F  MV+     + VT+  +++  +    ++   +I
Sbjct: 463 HDLISWNSMIMGFSHHGLANEALEVFEAMVDSGTHPNSVTFLGVLSACSHAGLINQGWEI 522

Query: 411 FEEM 414
           F  M
Sbjct: 523 FNAM 526


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 272/797 (34%), Positives = 426/797 (53%), Gaps = 84/797 (10%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMI------------------------ 53
           Q+ +I +LG+ GR+ EA ++F  M  ++ + +NSMI                        
Sbjct: 36  QSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNL 95

Query: 54  -------SAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP 106
                  S YA+ GRV DAR++F+ M  RN V+WN+M+  Y+ N  +  AR+LFD M   
Sbjct: 96  RTGTILLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMPSR 155

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           D+ SW  M+T Y     +E+AR LF+ +P +   + W  M++GY  I  +  A  +   M
Sbjct: 156 DVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVS-WTVMISGYVLIEQHGRAWDMFRTM 214

Query: 167 ---------PS------------------------------KNIVSWNSMLSGYTKNGEM 187
                    P+                              +++V   ++L+GYTK+  M
Sbjct: 215 LCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNM 274

Query: 188 -HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARN 246
              A KFFE M  R+  +W+ ++    +   +D A+  +Q+ P ++V S  +ML+G AR 
Sbjct: 275 LDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGLARY 334

Query: 247 GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYV 306
           GR+ +A+ LFDQ+   NVV+WNAMI  Y+Q   ++EA  LF  MP RN +SW  MI GY 
Sbjct: 335 GRIDDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYA 394

Query: 307 RIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV--------- 357
           R  + ++A   L  +  K +    + ++         EA +   ++ +  V         
Sbjct: 395 RNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSY 454

Query: 358 VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
           VC N +I  Y +   +     +F +M  KD V++N+ ++   Q    D+A  +F  M   
Sbjct: 455 VC-NALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNM-PS 512

Query: 418 RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI 477
            + VSW  +IS   Q +   +A++IF  M  E +  +   L   L    +L A QLG+QI
Sbjct: 513 PDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTILLGLSGNLGAPQLGQQI 572

Query: 478 HHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNA 537
           H +AIK G  + L V N+L++MY KC    + ++ F   +  D+ +WN++I GYA +G  
Sbjct: 573 HTIAIKLGMDSGLVVANALVSMYFKCSSADSLKV-FDSMEERDIFTWNTIITGYAQHGLG 631

Query: 538 TEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYAC 597
            EAI++++ MV  GV P+ VTF+G+L ACSH GLVD G + F+ M+  Y + PL+EHYAC
Sbjct: 632 REAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEHYAC 691

Query: 598 MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK 657
           M+DLL RAG +  A   +  M I+P++ IW  LLGAC++H+N+++GR A EKL  +EP  
Sbjct: 692 MVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAAEKLFSIEPSN 751

Query: 658 TSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRT 717
              Y +LSN+++  G WDEV KVR  M+  G  K PGCSW+++KN++H+F++GD +  + 
Sbjct: 752 AGNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWMQIKNKMHSFVTGDEEHEQI 811

Query: 718 AEICNTLKTLAAQIRNT 734
             I  TL  L   ++ T
Sbjct: 812 QNIYATLWELYTLLKAT 828



 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 145/520 (27%), Positives = 250/520 (48%), Gaps = 76/520 (14%)

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
           +P    T+  +A +    ++G  +EA+++ D+MP ++I++WNSM+  Y  NG        
Sbjct: 27  VPRSPGTSAQSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSL 86

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEAR 253
            +A+   ++ +  ++L GY     +  A + F  +  +N V+W  M++ Y +NG +  AR
Sbjct: 87  ADAISGGNLRTGTILLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLAR 146

Query: 254 RLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAK--- 310
           +LFD MP R+V +WN M+  Y     +EEA  LF  MPERN VSWT MI GYV I +   
Sbjct: 147 KLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGR 206

Query: 311 -----------------------------------LDEARRLLDQMPY-KNIAAQTAMIS 334
                                              L+    L+ +  + +++   TA+++
Sbjct: 207 AWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILN 266

Query: 335 GYVQNKRM-DEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN--------------- 378
           GY ++  M D A + F+ +   +   W+ +I   +Q GR+D+A                 
Sbjct: 267 GYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTS 326

Query: 379 ----------------LFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
                           LF Q+   ++V+WN MI GY Q   +D+A  +F  M   RNT+S
Sbjct: 327 MLTGLARYGRIDDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRM-PFRNTIS 385

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482
           W  +I+G+ +N     AL     + ++G     S+L  +  AC+++ AL+ G+Q+H LA+
Sbjct: 386 WAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAV 445

Query: 483 KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIK 542
           K+G   + +V N+LIT+Y K   I +   +F      D +S+NS ++    N    EA  
Sbjct: 446 KAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARD 505

Query: 543 LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           +F  M     +PD V++  ++SAC+     +  +++F  M
Sbjct: 506 VFNNM----PSPDVVSWTTIISACAQADQGNEAVEIFRSM 541



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 179/371 (48%), Gaps = 11/371 (2%)

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           A +A I    + G++ EA  +F  MP R+ ++W +MI  Y      D  R L D +   N
Sbjct: 35  AQSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGN 94

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
           +   T ++SGY +  R+ +A ++FD +G  + V WN M+  Y Q G +  A  LF  M +
Sbjct: 95  LRTGTILLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMPS 154

Query: 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVL 445
           +D+ +WNTM+ GY   + M++A  +FE M   RN VSW  +ISG++  E H  A  +F  
Sbjct: 155 RDVSSWNTMLTGYCHSQLMEEARNLFERM-PERNGVSWTVMISGYVLIEQHGRAWDMFRT 213

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK-CG 504
           M  EG   +   L   LSA  HL    +   IH L  K+G+  D+ VG +++  Y K   
Sbjct: 214 MLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVN 273

Query: 505 RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLS 564
            + +A   F+     +  +W+++IA  +  G   +A  +++   ++ V     +   +L+
Sbjct: 274 MLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVP----SRTSMLT 329

Query: 565 ACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNA 624
             +  G +D    LF+ +      EP V  +  MI    +   +DEA ++   M  +   
Sbjct: 330 GLARYGRIDDAKILFDQIH-----EPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTI 384

Query: 625 GIWGTLLGACR 635
              G + G  R
Sbjct: 385 SWAGMIAGYAR 395



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 99/415 (23%), Positives = 185/415 (44%), Gaps = 40/415 (9%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V ++   +T L + GR+++A  +F Q+ + N V++N+MI+ Y +N  V++A  LF +MP 
Sbjct: 321 VPSRTSMLTGLARYGRIDDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPF 380

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL-----FSWALMITCYTRKGELEKARE 129
           RN +SW  MIAGY  N + ++A      + R  +        +    C   +  LE  ++
Sbjct: 381 RNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEA-LETGKQ 439

Query: 130 LFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           +  L      + ++   NA++  Y K  +    +++ D M  K+ VS+NS +S   +N  
Sbjct: 440 VHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNL 499

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFF------QKIPEQNVVSWVTML 240
              A   F  M   DVVSW  ++    + D  + A + F      +++P   +++ +  L
Sbjct: 500 FDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTILLGL 559

Query: 241 SGYARNGRMLEARRLFDQMPI--------RNVVAWNAMIAAYVQRGQIEEAARLFIEMPE 292
           SG       L A +L  Q+            +V  NA+++ Y +     ++ ++F  M E
Sbjct: 560 SGN------LGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSS-ADSLKVFDSMEE 612

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYV----QNKRMDEANQI 348
           R+  +W T+I GY +     EA R+   M    +        G +     +  +DE +Q 
Sbjct: 613 RDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQF 672

Query: 349 FDKIG-----THDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAG 397
           F  +      T  +  +  M+    + G +  A +    M +  D V W+ ++  
Sbjct: 673 FKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGA 727


>gi|413952592|gb|AFW85241.1| hypothetical protein ZEAMMB73_384525 [Zea mays]
          Length = 683

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 234/643 (36%), Positives = 368/643 (57%), Gaps = 56/643 (8%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N  + G  + G ++ A++L DA+P++++V+WNS+L+  ++  ++  A  FF+AM  RD++
Sbjct: 40  NRSLVGLLRRGRFSAARRLFDALPARSVVTWNSLLAALSRGSDVRAARCFFDAMPVRDII 99

Query: 204 SWNLMLDGY---VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
           SWN +L  Y   ++ +DL +A + F ++P+++ VSW T+L  Y R G M EA+RLFD+MP
Sbjct: 100 SWNTLLSAYARSLQPNDLAAARRLFYEMPQRDAVSWSTLLGAYTRRGLMEEAQRLFDEMP 159

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA------ 314
            RN  +WN MI  +   GQ+ +A  +F  MP+++  S + M+ G++R  +L EA      
Sbjct: 160 HRNASSWNTMITGFFAVGQMRKALNVFAAMPDKDSASLSAMVSGFIRNGRLHEADDLLTK 219

Query: 315 ------------------------------RRLLDQMPY--------------KNIAAQT 330
                                         RRL   +P               +N+ +  
Sbjct: 220 RLTVMDMDKAVGAFNTLIAAYGQTGRVTDARRLFSMIPKTQNQHKGHKRMVFERNVVSWN 279

Query: 331 AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
           +M+  Y++   +  A  +FD++   D+V WN MI GY Q   M+EA  LF ++ + D VT
Sbjct: 280 SMMMCYIRTGDVCSARALFDEMPHKDLVSWNTMIAGYTQASEMEEAEKLFWEVPDPDAVT 339

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
           WN MI G+ Q   ++ A   F+ M +R +T++WN +ISG+ QNE +   +K+F  M + G
Sbjct: 340 WNLMIRGFTQKGDVEHARGFFDRMPER-STITWNTMISGYEQNEDYDSTIKLFQRMLEVG 398

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
           ++ DH TL+  L+ACA LA L+LG Q+H L I+  ++ D    N+L+TMY++CG + +A+
Sbjct: 399 ERPDHHTLSSVLAACASLAMLRLGAQLHQL-IEKSFLPDTATNNALMTMYSRCGELISAK 457

Query: 511 LLFKDADPV-DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
            +F       D++SWN+LI GY   GNATEA++LFEEM    V P  +TFI +LSAC + 
Sbjct: 458 AIFGHMHTQRDIVSWNALIGGYEQQGNATEALRLFEEMRSAKVMPTHITFISLLSACGNA 517

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629
           GLV  G  +F  M   Y +   VEHYA +++L+ R G+L++A E++K M I P+  +WG 
Sbjct: 518 GLVSEGRVVFHTMVHDYGLAASVEHYAALVNLIGRHGQLEDALELIKSMPIAPDRAVWGA 577

Query: 630 LLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689
            LGAC   +N  L  +A   LS+++P  ++ Y L+ N+HA  GRW     VR  ME  G 
Sbjct: 578 FLGACTAKKNEPLAEMAANALSKIDPDSSAPYVLMHNLHAHEGRWGSASLVREDMERLGI 637

Query: 690 QKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            K PG SWI++ +++H F+SGD     T EI + L+      R
Sbjct: 638 HKHPGYSWIDLHDKVHVFISGDTSHPLTHEIFSVLECFNRSCR 680



 Score =  281 bits (719), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 170/574 (29%), Positives = 296/574 (51%), Gaps = 38/574 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V   N+ +  L + GR   A ++F  +  ++ VT+NS+++A ++   V  AR  F+ MP 
Sbjct: 36  VRQHNRSLVGLLRRGRFSAARRLFDALPARSVVTWNSLLAALSRGSDVRAARCFFDAMPV 95

Query: 75  RNLVSWNSMIAGY---LHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           R+++SWN++++ Y   L  + +  AR LF +M + D  SW+ ++  YTR+G +E+A+ LF
Sbjct: 96  RDIISWNTLLSAYARSLQPNDLAAARRLFYEMPQRDAVSWSTLLGAYTRRGLMEEAQRLF 155

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH--- 188
           D +P++ + + WN M+ G+  +G   +A  +  AMP K+  S ++M+SG+ +NG +H   
Sbjct: 156 DEMPHR-NASSWNTMITGFFAVGQMRKALNVFAAMPDKDSASLSAMVSGFIRNGRLHEAD 214

Query: 189 -LASKFFEAME-ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP--------------EQN 232
            L +K    M+ ++ V ++N ++  Y +   +  A + F  IP              E+N
Sbjct: 215 DLLTKRLTVMDMDKAVGAFNTLIAAYGQTGRVTDARRLFSMIPKTQNQHKGHKRMVFERN 274

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE 292
           VVSW +M+  Y R G +  AR LFD+MP +++V+WN MIA Y Q  ++EEA +LF E+P+
Sbjct: 275 VVSWNSMMMCYIRTGDVCSARALFDEMPHKDLVSWNTMIAGYTQASEMEEAEKLFWEVPD 334

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK- 351
            + V+W  MI G+ +   ++ AR   D+MP ++      MISGY QN+  D   ++F + 
Sbjct: 335 PDAVTWNLMIRGFTQKGDVEHARGFFDRMPERSTITWNTMISGYEQNEDYDSTIKLFQRM 394

Query: 352 --IGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVTWNTMIAGYAQIRQM 404
             +G   D    + ++   A    +     L  Q++ K    D  T N ++  Y++  ++
Sbjct: 395 LEVGERPDHHTLSSVLAACASLAMLRLGAQL-HQLIEKSFLPDTATNNALMTMYSRCGEL 453

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSA 464
             A  IF  M  +R+ VSWNALI G+ Q     +AL++F  M        H T    LSA
Sbjct: 454 ISAKAIFGHMHTQRDIVSWNALIGGYEQQGNATEALRLFEEMRSAKVMPTHITFISLLSA 513

Query: 465 CAHLAALQLGRQIHHLAIKS-GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--DV 521
           C +   +  GR + H  +   G    +    +L+ +  + G++++A  L K   P+  D 
Sbjct: 514 CGNAGLVSEGRVVFHTMVHDYGLAASVEHYAALVNLIGRHGQLEDALELIKSM-PIAPDR 572

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555
             W + +   A      E +       +  + PD
Sbjct: 573 AVWGAFLG--ACTAKKNEPLAEMAANALSKIDPD 604


>gi|224103137|ref|XP_002312939.1| predicted protein [Populus trichocarpa]
 gi|222849347|gb|EEE86894.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 242/610 (39%), Positives = 360/610 (59%), Gaps = 56/610 (9%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N  ++  AK G  +EA+ L D M   N VSWN+++  Y K  E+  A K F+ M +RD+V
Sbjct: 1   NKKISNLAKNGRIDEARALFDQMEETNTVSWNAIIRAYVKRREIAKARKLFDEMPQRDIV 60

Query: 204 SWNLMLDGYVE---LDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
           SWNLM+ GYV    +  L      F ++PE+++VSW TM+SGYA+NGRM EA R+F  MP
Sbjct: 61  SWNLMISGYVSCHGIRFLKEGRNLFDRMPERDIVSWNTMISGYAKNGRMDEALRMFKLMP 120

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS----------------------- 297
             +VV+WNA++  ++Q G +  A   F  MPER+  S                       
Sbjct: 121 EGDVVSWNAIVTGFLQNGDVARAIEYFERMPERDAASLSALVSGLIRNGELDEAARVVVR 180

Query: 298 --------------WTTMIDGYVRIAKLDEARRLLDQMPY-------------KNIAAQT 330
                         + T+I GY R  ++DEAR+L DQ+P+             +N+ +  
Sbjct: 181 FERDGGRKENLLQAYNTLIAGYGRRDRVDEARKLFDQIPFCDGKGKGGDGRFGRNVVSWN 240

Query: 331 AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
            MI  YV+   +  A ++FD++   D + WN MI GY     MDEA  LF +M N DI +
Sbjct: 241 TMIMCYVKAGNIVFARELFDQMMERDTISWNTMISGYVNMLDMDEASRLFCEMPNPDIFS 300

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
           WN MIAG+AQI  +D    +F  M  ++N VSWN++I+G+ +N+ ++ A+KIF+ M  EG
Sbjct: 301 WNKMIAGHAQIGDLDRVNDLFGRM-PQKNLVSWNSVITGYEKNDDYIGAIKIFIQMQVEG 359

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
           +K D  TL+  LS  A +  LQLG QIH L  K+  + D+ + N+LITMY++CG I  A 
Sbjct: 360 EKPDRHTLSSVLSVSAGIVDLQLGMQIHQLVTKT-VIPDVPINNALITMYSRCGAIIEAG 418

Query: 511 LLFKDAD-PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
            +F +     +VISWN++I GYA +G A EA+++F+ M    V P  +TFI VL AC+H 
Sbjct: 419 TIFDEVKLQKEVISWNAMIGGYASHGYAVEALEVFKLMKSFDVRPTHITFISVLHACAHA 478

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629
           GLV+ G ++FE M + + IEP VEHYA ++D++SR G+L++A +++  M  +P+  +WG 
Sbjct: 479 GLVEEGREIFESMADEFGIEPSVEHYASLVDIMSRHGQLEQALDLINSMPFEPDKAVWGA 538

Query: 630 LLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689
           LL A ++H  I++ R+A E L  LEP  ++ Y LL NM+A+ G+WD   +VR+ ME S  
Sbjct: 539 LLSAAKVHNKIEVARVAAEALIRLEPDSSAPYVLLYNMYADVGQWDSAAEVRIMMERSNI 598

Query: 690 QKQPGCSWIE 699
           +KQ   SW++
Sbjct: 599 KKQAAYSWVD 608



 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 186/568 (32%), Positives = 311/568 (54%), Gaps = 34/568 (5%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           NKKI+ L K+GR++EA  +F QM + NTV++N++I AY K   +  ARKLF++MPQR++V
Sbjct: 1   NKKISNLAKNGRIDEARALFDQMEETNTVSWNAIIRAYVKRREIAKARKLFDEMPQRDIV 60

Query: 79  SWNSMIAGYL--HNDK-VKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           SWN MI+GY+  H  + +KE R LFD+M   D+ SW  MI+ Y + G +++A  +F L+P
Sbjct: 61  SWNLMISGYVSCHGIRFLKEGRNLFDRMPERDIVSWNTMISGYAKNGRMDEALRMFKLMP 120

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
            + D   WNA+V G+ + G+   A +  + MP ++  S ++++SG  +NGE+  A++   
Sbjct: 121 -EGDVVSWNAIVTGFLQNGDVARAIEYFERMPERDAASLSALVSGLIRNGELDEAARVVV 179

Query: 196 AME------ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-------------EQNVVSW 236
             E      E  + ++N ++ GY   D +D A K F +IP              +NVVSW
Sbjct: 180 RFERDGGRKENLLQAYNTLIAGYGRRDRVDEARKLFDQIPFCDGKGKGGDGRFGRNVVSW 239

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
            TM+  Y + G ++ AR LFDQM  R+ ++WN MI+ YV    ++EA+RLF EMP  +  
Sbjct: 240 NTMIMCYVKAGNIVFARELFDQMMERDTISWNTMISGYVNMLDMDEASRLFCEMPNPDIF 299

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF------- 349
           SW  MI G+ +I  LD    L  +MP KN+ +  ++I+GY +N     A +IF       
Sbjct: 300 SWNKMIAGHAQIGDLDRVNDLFGRMPQKNLVSWNSVITGYEKNDDYIGAIKIFIQMQVEG 359

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVK 409
           +K   H +     +  G        +   L  + V  D+   N +I  Y++   + +A  
Sbjct: 360 EKPDRHTLSSVLSVSAGIVDLQLGMQIHQLVTKTVIPDVPINNALITMYSRCGAIIEAGT 419

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           IF+E+  ++  +SWNA+I G+  + + ++AL++F LM     +  H T    L ACAH  
Sbjct: 420 IFDEVKLQKEVISWNAMIGGYASHGYAVEALEVFKLMKSFDVRPTHITFISVLHACAHAG 479

Query: 470 ALQLGRQI-HHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA-ELLFKDADPVDVISWNSL 527
            ++ GR+I   +A + G    +    SL+ + ++ G+++ A +L+       D   W +L
Sbjct: 480 LVEEGREIFESMADEFGIEPSVEHYASLVDIMSRHGQLEQALDLINSMPFEPDKAVWGAL 539

Query: 528 IAGYAINGNATEAIKLFEEMVMEGVAPD 555
           ++   ++ N  E  ++  E ++  + PD
Sbjct: 540 LSAAKVH-NKIEVARVAAEALIR-LEPD 565



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 178/348 (51%), Gaps = 35/348 (10%)

Query: 9   GNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMS-------------QKNTVTYNSMISA 55
           G K + +   N  I   G+  RV+EA K+F Q+               +N V++N+MI  
Sbjct: 186 GRKENLLQAYNTLIAGYGRRDRVDEARKLFDQIPFCDGKGKGGDGRFGRNVVSWNTMIMC 245

Query: 56  YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMI 115
           Y K G +  AR+LF+QM +R+ +SWN+MI+GY++   + EA  LF +M  PD+FSW  MI
Sbjct: 246 YVKAGNIVFARELFDQMMERDTISWNTMISGYVNMLDMDEASRLFCEMPNPDIFSWNKMI 305

Query: 116 TCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------PSK 169
             + + G+L++  +LF  +P K +   WN+++ GY K  +Y  A K+   M      P +
Sbjct: 306 AGHAQIGDLDRVNDLFGRMPQK-NLVSWNSVITGYEKNDDYIGAIKIFIQMQVEGEKPDR 364

Query: 170 NIVSWNSMLSGYTKNGEMHLASKFFEAMEER---DVVSWNLMLDGYVELDDLDSAWKFFQ 226
           + +S  S+LS      ++ L  +  + + +    DV   N ++  Y     +  A   F 
Sbjct: 365 HTLS--SVLSVSAGIVDLQLGMQIHQLVTKTVIPDVPINNALITMYSRCGAIIEAGTIFD 422

Query: 227 KIP-EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIE 281
           ++  ++ V+SW  M+ GYA +G  +EA  +F  M   +V    + + +++ A    G +E
Sbjct: 423 EVKLQKEVISWNAMIGGYASHGYAVEALEVFKLMKSFDVRPTHITFISVLHACAHAGLVE 482

Query: 282 EAARLFIEMPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQMPYK 324
           E   +F  M +   +      + +++D   R  +L++A  L++ MP++
Sbjct: 483 EGREIFESMADEFGIEPSVEHYASLVDIMSRHGQLEQALDLINSMPFE 530


>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
          Length = 618

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 231/542 (42%), Positives = 342/542 (63%), Gaps = 5/542 (0%)

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPE--QNVVSWVTMLSG 242
           G +  A + F+   +RDVVSW  ++  Y     L  A   F + P+  +NVV+W  +LSG
Sbjct: 49  GRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALFDR-PDARRNVVTWTALLSG 107

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMI 302
           YAR GR+ EA  LF +MP RNVV+WN M+ AY   G++ +A  LF  MP R+  SW  ++
Sbjct: 108 YARAGRVDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPVRDAGSWNILL 167

Query: 303 DGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNV 362
              VR   +D+AR+L D+MP +N+ A T M++G  ++  +DEA  +FD +   +VV WN 
Sbjct: 168 AALVRSGNMDKARKLFDRMPERNVMAWTTMVAGIARSGSVDEARALFDGMPERNVVSWNA 227

Query: 363 MIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
           MI GYA+  R+DEA +LF +M  +DI +WN MI G+ Q R ++ A  +F++M  RRN ++
Sbjct: 228 MISGYARNHRIDEAHDLFMKMPTRDIASWNIMITGFIQDRDLERAQDLFDKM-PRRNVIT 286

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482
           W  +++G+LQ+     AL+IF  M  EG + +  T   A+ AC++LA L  G+Q+H +  
Sbjct: 287 WTTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMIC 346

Query: 483 KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIK 542
           K+ +  D F+ ++L+ +YAKCG I+ A  +F  +   DVISWN +IA YA +G   EAI 
Sbjct: 347 KTSFQFDTFIESTLMNLYAKCGEIRLARKVFDLSKEKDVISWNGMIAAYAHHGVGVEAIH 406

Query: 543 LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLL 602
           L+E+M  +G  P+ VT++G+LSACSH GLVD GL++FE M +  +I    EHY C+IDL 
Sbjct: 407 LYEKMQEKGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLC 466

Query: 603 SRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYA 662
           SRAGRL +A  ++  +K++P++ +W  LLG C  H N  +G +A   L E EP     Y 
Sbjct: 467 SRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHGNESIGDLAARNLLEAEPNNAGTYT 526

Query: 663 LLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICN 722
           LL N++A AG+W E  K+R  M   G +KQPGCSWIEV+N++H F+S D K    +++ N
Sbjct: 527 LLCNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWIEVENKVHVFVSRD-KSHSESDLIN 585

Query: 723 TL 724
           +L
Sbjct: 586 SL 587



 Score =  288 bits (736), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 163/475 (34%), Positives = 263/475 (55%), Gaps = 25/475 (5%)

Query: 81  NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
           N  +A      +V +AR LFD+    D+ SW  ++  Y R+G L  AR LFD    + + 
Sbjct: 39  NRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALFDRPDARRNV 98

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER 200
             W A+++GYA+ G  +EA+ L   MP +N+VSWN+ML  YT  G +  A   F+ M  R
Sbjct: 99  VTWTALLSGYARAGRVDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPVR 158

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
           D  SWN++L   V   ++D A K F ++PE+NV++W TM++G AR+G + EAR LFD MP
Sbjct: 159 DAGSWNILLAALVRSGNMDKARKLFDRMPERNVMAWTTMVAGIARSGSVDEARALFDGMP 218

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
            RNVV+WNAMI+ Y +  +I+EA  LF++MP R+  SW  MI G+++   L+ A+ L D+
Sbjct: 219 ERNVVSWNAMISGYARNHRIDEAHDLFMKMPTRDIASWNIMITGFIQDRDLERAQDLFDK 278

Query: 321 MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL- 379
           MP +N+   T M++GY+Q+ + + A QIF+ +    +    V        G +D   NL 
Sbjct: 279 MPRRNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVTF-----LGAVDACSNLA 333

Query: 380 -------FRQMVNKDIVTWNTMIAG-----YAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
                    QM+ K    ++T I       YA+  ++  A K+F ++ K ++ +SWN +I
Sbjct: 334 GLSEGQQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRLARKVF-DLSKEKDVISWNGMI 392

Query: 428 SGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK--SG 485
           + +  +   ++A+ ++  M ++G K +  T    LSAC+H   +  G +I    +K  S 
Sbjct: 393 AAYAHHGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSI 452

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELL--FKDADPVDVISWNSLIAGYAINGNAT 538
            V D      LI + ++ GR+ +A+ L  F   +P   + WN+L+ G   +GN +
Sbjct: 453 AVRDEHY-TCLIDLCSRAGRLGDAKRLIHFLKVEPSSTV-WNALLGGCNSHGNES 505



 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 168/527 (31%), Positives = 270/527 (51%), Gaps = 28/527 (5%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPD-- 107
           N  ++  A  GRV+DAR+LF++ P R++VSW +++A Y     + +AR LFD   RPD  
Sbjct: 39  NRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALFD---RPDAR 95

Query: 108 --LFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDA 165
             + +W  +++ Y R G +++A  LF  +P + +   WN M+  Y   G   +A  L D 
Sbjct: 96  RNVVTWTALLSGYARAGRVDEAEALFQRMPER-NVVSWNTMLEAYTSAGRVRDAWTLFDG 154

Query: 166 MPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFF 225
           MP ++  SWN +L+   ++G M  A K F+ M ER+V++W  M+ G      +D A   F
Sbjct: 155 MPVRDAGSWNILLAALVRSGNMDKARKLFDRMPERNVMAWTTMVAGIARSGSVDEARALF 214

Query: 226 QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAAR 285
             +PE+NVVSW  M+SGYARN R+ EA  LF +MP R++ +WN MI  ++Q   +E A  
Sbjct: 215 DGMPERNVVSWNAMISGYARNHRIDEAHDLFMKMPTRDIASWNIMITGFIQDRDLERAQD 274

Query: 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQN----KR 341
           LF +MP RN ++WTTM++GY++  + + A ++ + M  + I        G V        
Sbjct: 275 LFDKMPRRNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAG 334

Query: 342 MDEANQIFDKIGT----HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAG 397
           + E  Q+   I       D    + ++  YA+CG +  A  +F     KD+++WN MIA 
Sbjct: 335 LSEGQQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRLARKVFDLSKEKDVISWNGMIAA 394

Query: 398 YAQIRQMDDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA- 453
           YA      +A+ ++E+M   G + N V++  L+S    +    + L+IF  M ++   A 
Sbjct: 395 YAHHGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAV 454

Query: 454 --DHSTLACALSACAHLAAL-QLGRQIHHLAIK-SGYVNDLFVGNSLITMYAKCGRIQNA 509
             +H T  C +  C+    L    R IH L ++ S  V +  +G          G +   
Sbjct: 455 RDEHYT--CLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHGNESIGDLAAR 512

Query: 510 ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
            LL  +A+P +  ++  L   YA  G   EA K+  EM   G+   P
Sbjct: 513 NLL--EAEPNNAGTYTLLCNIYASAGKWKEAAKIRSEMNDRGLKKQP 557



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 131/452 (28%), Positives = 229/452 (50%), Gaps = 61/452 (13%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           ++   ++GRV+EA  +F +M ++N V++N+M+ AY   GRV DA  LF+ MP R+  SWN
Sbjct: 105 LSGYARAGRVDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGMPVRDAGSWN 164

Query: 82  SMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTA 141
            ++A  + +  + +AR+LFD+M   ++ +W  M+    R G +++AR LFD +P + +  
Sbjct: 165 ILLAALVRSGNMDKARKLFDRMPERNVMAWTTMVAGIARSGSVDEARALFDGMPER-NVV 223

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
            WNAM++GYA+    +EA  L   MP+++I SWN M++G+ ++ ++  A   F+ M  R+
Sbjct: 224 SWNAMISGYARNHRIDEAHDLFMKMPTRDIASWNIMITGFIQDRDLERAQDLFDKMPRRN 283

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKI------PEQ----NVVSWVTMLSG--------- 242
           V++W  M++GY++    ++A + F  +      P Q      V   + L+G         
Sbjct: 284 VITWTTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEGQQVHQ 343

Query: 243 --------------------YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEE 282
                               YA+ G +  AR++FD    ++V++WN MIAAY   G   E
Sbjct: 344 MICKTSFQFDTFIESTLMNLYAKCGEIRLARKVFDLSKEKDVISWNGMIAAYAHHGVGVE 403

Query: 283 AARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQM-PYKNIAAQ----TAMI 333
           A  L+ +M E+    N V++  ++        +DE  R+ + M   ++IA +    T +I
Sbjct: 404 AIHLYEKMQEKGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLI 463

Query: 334 SGYVQNKRMDEANQI--FDKIGTHDVVCWNVMIKGYAQCGRMDEAI------NLFRQMVN 385
               +  R+ +A ++  F K+     V WN ++ G    G  +E+I      NL     N
Sbjct: 464 DLCSRAGRLGDAKRLIHFLKVEPSSTV-WNALLGGCNSHG--NESIGDLAARNLLEAEPN 520

Query: 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
            +  T+  +   YA   +  +A KI  EM  R
Sbjct: 521 -NAGTYTLLCNIYASAGKWKEAAKIRSEMNDR 551



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 178/319 (55%), Gaps = 22/319 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +  L +SG +++A K+F +M ++N + + +M++  A++G V++AR LF+ MP+RN+V
Sbjct: 164 NILLAALVRSGNMDKARKLFDRMPERNVMAWTTMVAGIARSGSVDEARALFDGMPERNVV 223

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           SWN+MI+GY  N ++ EA +LF KM   D+ SW +MIT + +  +LE+A++LFD +P + 
Sbjct: 224 SWNAMISGYARNHRIDEAHDLFMKMPTRDIASWNIMITGFIQDRDLERAQDLFDKMP-RR 282

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----------VSWNSMLSGYTKNGEMH 188
           +   W  M+ GY +      A ++ + M  + I          V   S L+G ++  ++H
Sbjct: 283 NVITWTTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEGQQVH 342

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGR 248
                 +   + D    + +++ Y +  ++  A K F    E++V+SW  M++ YA +G 
Sbjct: 343 --QMICKTSFQFDTFIESTLMNLYAKCGEIRLARKVFDLSKEKDVISWNGMIAAYAHHGV 400

Query: 249 MLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WT 299
            +EA  L+++M  +    N V +  +++A    G ++E  R+F  M +   ++     +T
Sbjct: 401 GVEAIHLYEKMQEKGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYT 460

Query: 300 TMIDGYVRIAKLDEARRLL 318
            +ID   R  +L +A+RL+
Sbjct: 461 CLIDLCSRAGRLGDAKRLI 479


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 226/536 (42%), Positives = 341/536 (63%), Gaps = 1/536 (0%)

Query: 197 MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF 256
           M  RD V++N+M+  +     +  A  +F   PE++ VSW  ML+ Y RNGR+ EAR LF
Sbjct: 1   MPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF 60

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
           +     +V++WNA+++ YVQ G++ EA  LF  MP R+ VSW  M+ GY R   + EARR
Sbjct: 61  NSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARR 120

Query: 317 LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
           L D  P +++   TA++SGY QN  ++EA ++FD +   + V WN M+  Y Q   MDEA
Sbjct: 121 LFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEA 180

Query: 377 INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
             LF  M  +++ +WNTM+ GYAQ   +++A  +F+ M  +++ VSW A+++ + Q    
Sbjct: 181 KELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTM-PQKDAVSWAAMLAAYSQGGCS 239

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSL 496
            + L++F+ M + G+  + S  AC LS CA +AAL+ G Q+H   I++GY    FVGN+L
Sbjct: 240 EETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNAL 299

Query: 497 ITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
           + MY KCG +++A   F++ +  DV+SWN++IAGYA +G   EA+++F+ M      PD 
Sbjct: 300 LAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDD 359

Query: 557 VTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVK 616
           +T +GVL+ACSH GLV+ G+  F  M   + +    EHY CMIDLL RAGRL EA +++K
Sbjct: 360 ITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMK 419

Query: 617 GMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDE 676
            M  +P++ +WG LLGA R+H+N +LGR A EK+ ELEP+    Y LLSN++A +G+W +
Sbjct: 420 DMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRD 479

Query: 677 VEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
             K+RV ME  G +K PG SWIEV+N++HTF +GD       +I   L+ L  +++
Sbjct: 480 ARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMK 535



 Score =  264 bits (674), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 141/386 (36%), Positives = 228/386 (59%), Gaps = 13/386 (3%)

Query: 41  MSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF 100
           M  +++VTYN MIS++A +G V+ AR  F+  P+++ VSWN M+A Y+ N +V+EAR LF
Sbjct: 1   MPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF 60

Query: 101 DKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
           +     D+ SW  +++ Y + G++ +ARELFD +P + D   WN MV+GYA+ G+  EA+
Sbjct: 61  NSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGR-DVVSWNIMVSGYARRGDMVEAR 119

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
           +L DA P +++ +W +++SGY +NG +  A + F+AM ER+ VSWN M+  Y++   +D 
Sbjct: 120 RLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDE 179

Query: 221 AWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQI 280
           A + F  +P +NV SW TML+GYA+ G + EA+ +FD MP ++ V+W AM+AAY Q G  
Sbjct: 180 AKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCS 239

Query: 281 EEAARLFIEMPE----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA----AQTAM 332
           EE  +LFIEM       N  ++  ++     IA L+   +L  ++             A+
Sbjct: 240 EETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNAL 299

Query: 333 ISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDI 388
           ++ Y +   M++A   F+++   DVV WN MI GYA+ G   EA+ +F  M       D 
Sbjct: 300 LAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDD 359

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEM 414
           +T   ++A  +    ++  +  F  M
Sbjct: 360 ITLVGVLAACSHSGLVEKGISYFYSM 385



 Score =  262 bits (669), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 160/488 (32%), Positives = 242/488 (49%), Gaps = 86/488 (17%)

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           D  ++ +MI+ +   G +  AR  FDL P K D   WN M+A Y + G   EA+ L ++ 
Sbjct: 5   DSVTYNVMISSHANHGLVSLARHYFDLAPEK-DAVSWNGMLAAYVRNGRVEEARGLFNSR 63

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
              +++SWN+++SGY + G+M  A + F+ M  RDVVSWN+M+ GY    D+  A + F 
Sbjct: 64  TEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFD 123

Query: 227 KIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
             P ++V +W  ++SGYA+NG + EARR+FD MP RN V+WNAM+AAY+QR  ++EA  L
Sbjct: 124 AAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKEL 183

Query: 287 FIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEAN 346
           F  MP RN  SW TM+ GY +   L+EA+ + D MP K+  +  AM++ Y Q    +E  
Sbjct: 184 FNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETL 243

Query: 347 QIFDKIGT-------------------------------------HDVVCW--NVMIKGY 367
           Q+F ++G                                      + V C+  N ++  Y
Sbjct: 244 QLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMY 303

Query: 368 AQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
            +CG M++A N F +M  +D+V+WNTMIAGYA                            
Sbjct: 304 FKCGNMEDARNAFEEMEERDVVSWNTMIAGYA---------------------------- 335

Query: 428 SGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG----RQIHHLAIK 483
               ++ F  +AL+IF +M     K D  TL   L+AC+H   ++ G      +HH    
Sbjct: 336 ----RHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHH---D 388

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAINGNA---- 537
            G          +I +  + GR+  A  L KD   +P D   W +L+    I+ N     
Sbjct: 389 FGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEP-DSTMWGALLGASRIHRNPELGR 447

Query: 538 TEAIKLFE 545
           + A K+FE
Sbjct: 448 SAAEKIFE 455



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 153/488 (31%), Positives = 238/488 (48%), Gaps = 58/488 (11%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I+     G V  A   F    +K+ V++N M++AY +NGRV +AR LF    + +++
Sbjct: 10  NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVI 69

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           SWN++++GY+   K+ EARELFD+M   D+ SW +M++ Y R+G++ +AR LFD  P + 
Sbjct: 70  SWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR- 128

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           D   W A+V+GYA+ G   EA+++ DAMP +N VSWN+M++ Y +   M  A + F  M 
Sbjct: 129 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMP 188

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
            R+V SWN ML GY +   L+ A   F  +P+++ VSW  ML+ Y++ G   E  +LF +
Sbjct: 189 CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIE 248

Query: 259 MP----------------------------------IR-----NVVAWNAMIAAYVQRGQ 279
           M                                   IR          NA++A Y + G 
Sbjct: 249 MGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGN 308

Query: 280 IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYV-- 337
           +E+A   F EM ER+ VSW TMI GY R     EA  + D M   +       + G +  
Sbjct: 309 MEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAA 368

Query: 338 -QNKRMDEANQIFDKIGTHDVVC------WNVMIKGYAQCGRMDEAINLFRQM-VNKDIV 389
             +  + E    +     HD         +  MI    + GR+ EA +L + M    D  
Sbjct: 369 CSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDST 428

Query: 390 TWNTMIAGYAQIRQMDD-----AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
            W  ++ G ++I +  +     A KIFE   +  N   +  L + +  +    DA K+ V
Sbjct: 429 MWGALL-GASRIHRNPELGRSAAEKIFEL--EPENAGMYVLLSNIYASSGKWRDARKMRV 485

Query: 445 LMTQEGKK 452
           +M + G K
Sbjct: 486 MMEERGVK 493



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 162/361 (44%), Gaps = 80/361 (22%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G  V + N  ++   + G + EA ++F     ++  T+ +++S YA+NG + +AR++F+ 
Sbjct: 96  GRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDA 155

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           MP+RN VSWN+M+A Y+    + EA+ELF+ M   ++ SW  M+T Y + G LE+A+ +F
Sbjct: 156 MPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVF 215

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEA-------------------------------- 159
           D +P K D   W AM+A Y++ G   E                                 
Sbjct: 216 DTMPQK-DAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAAL 274

Query: 160 -------KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY 212
                   +L+ A         N++L+ Y K G M  A   FE MEERDVVSWN      
Sbjct: 275 ECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWN------ 328

Query: 213 VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWN 268
                                    TM++GYAR+G   EA  +FD M   +     +   
Sbjct: 329 -------------------------TMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLV 363

Query: 269 AMIAAYVQRGQIEEAARLFIEMPE-----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
            ++AA    G +E+    F  M         P  +T MID   R  +L EA  L+  MP+
Sbjct: 364 GVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPF 423

Query: 324 K 324
           +
Sbjct: 424 E 424



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 100/207 (48%), Gaps = 20/207 (9%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G   F  N  +    K G +E+A   F +M +++ V++N+MI+ YA++G   +A ++F+ 
Sbjct: 290 GVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDM 349

Query: 72  M----PQRNLVSWNSMIAGYLHNDKVKEARELFDKMF-------RPDLFSWALMITCYTR 120
           M     + + ++   ++A   H+  V++    F  M        +P+ ++   MI    R
Sbjct: 350 MRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYT--CMIDLLGR 407

Query: 121 KGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNE-----AKKLLDAMPSKNIVSWN 175
            G L +A +L   +P + D+  W A++ G ++I    E     A+K+ +  P +N   + 
Sbjct: 408 AGRLAEAHDLMKDMPFEPDSTMWGALL-GASRIHRNPELGRSAAEKIFELEP-ENAGMYV 465

Query: 176 SMLSGYTKNGEMHLASKFFEAMEERDV 202
            + + Y  +G+   A K    MEER V
Sbjct: 466 LLSNIYASSGKWRDARKMRVMMEERGV 492


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/570 (39%), Positives = 350/570 (61%), Gaps = 3/570 (0%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           NA +A  A+ GN   A+   +AMP +   S+N++L+GY +N     A   F  M  RD+ 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 204 SWNLMLDGY-VELDDLDSAWKFFQKIP-EQNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
           S+N ++ G  +    L  A      IP   +VVS+ ++L GY R+G + +A RLF QMP 
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           RN V++  ++   +  G++ EA RLF EMP+R+ V+WT M+ GY +  ++ EAR L D+M
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 322 PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
           P +N+ + TAMISGY QN  ++ A ++F+ +   + V W  M+ GY Q G +++A  LF 
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFN 260

Query: 382 QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALK 441
            M    +   N M+ G+ Q   +D A  +FE+M + R+  +W+A+I  + QNEF ++AL 
Sbjct: 261 AMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKM-RERDDGTWSAMIKAYEQNEFLMEALS 319

Query: 442 IFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYA 501
            F  M   G + ++ ++   L+ CA LA L  GR++H   ++  +  D+F  ++LITMY 
Sbjct: 320 TFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYI 379

Query: 502 KCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIG 561
           KCG +  A+ +F   +P D++ WNS+I GYA +G   +A+ +F +M + G++PD +T+IG
Sbjct: 380 KCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIG 439

Query: 562 VLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIK 621
            L+ACS+ G V  G ++F  MT   +I P  EHY+CM+DLL R+G ++EAF+++K M ++
Sbjct: 440 ALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVE 499

Query: 622 PNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVR 681
           P+A IWG L+GACRMH+N ++  +A +KL ELEP     Y LLS+++   GRW++  K+R
Sbjct: 500 PDAVIWGALMGACRMHRNAEIAEVAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMR 559

Query: 682 VSMEGSGAQKQPGCSWIEVKNQIHTFLSGD 711
             +      K PGCSWIE   ++H F SGD
Sbjct: 560 KFISSRNLNKSPGCSWIEYDKRVHLFTSGD 589



 Score =  244 bits (624), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 158/536 (29%), Positives = 266/536 (49%), Gaps = 55/536 (10%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N +I  L ++G +E A   F  M  + T +YN++++ Y +N   + A  LF +MP R+L 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 79  SWNSMIAGY-LHNDKVKEARELFDKM-FRPDLFSWALMITCYTRKGELEKARELFDLLPN 136
           S+N++I+G  L    + +A      + F P + S+  ++  Y R G L  A  LF  +P 
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 137 KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEA 196
           +   + +  ++ G    G  NEA++L D MP +++V+W +MLSGY + G +  A   F+ 
Sbjct: 141 RNHVS-YTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDE 199

Query: 197 MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF 256
           M +R+VVSW  M+ GY +  +++ A K F+ +PE+N VSW  ML GY + G + +A  LF
Sbjct: 200 MPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELF 259

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
           + MP   V A NAM+  + QRG ++ A  +F +M ER+  +W+ MI  Y +   L EA  
Sbjct: 260 NAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALS 319

Query: 317 LLDQMPYK----NIAAQTAMISGYVQNKRMDEANQI--------FDKIGTHDVVCWNVMI 364
              +M ++    N  +  ++++       +D   ++        FD     DV   + +I
Sbjct: 320 TFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDM----DVFAVSALI 375

Query: 365 KGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
             Y +CG +D+A  +F     KDIV WN+MI GYAQ             +G++       
Sbjct: 376 TMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQ-----------HGLGEQ------- 417

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI-HHLAIK 483
                         AL IF  M   G   D  T   AL+AC++   ++ GR+I + + + 
Sbjct: 418 --------------ALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVN 463

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGNA 537
           S         + ++ +  + G ++ A  L K+  PV  D + W +L+    ++ NA
Sbjct: 464 SSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNM-PVEPDAVIWGALMGACRMHRNA 518



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 166/358 (46%), Gaps = 24/358 (6%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           I+   ++G V  A K+F  M ++N V++ +M+  Y + G V DA +LF  MP+  + + N
Sbjct: 212 ISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACN 271

Query: 82  SMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF------DLLP 135
           +M+ G+     V  A+ +F+KM   D  +W+ MI  Y +   L +A   F       + P
Sbjct: 272 AMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRP 331

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAK-KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           N         + A  A +    E    +L      ++ + +++++ Y K G +  A + F
Sbjct: 332 NYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVF 391

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRML 250
              E +D+V WN M+ GY +    + A   F  +       + ++++  L+  +  G++ 
Sbjct: 392 HTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVK 451

Query: 251 EARRLFDQMPIRNVV-----AWNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMIDG 304
           E R +F+ M + + +      ++ M+    + G +EEA  L   MP E + V W  ++ G
Sbjct: 452 EGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALM-G 510

Query: 305 YVRIAKLDE-----ARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV 357
             R+ +  E     A++LL+  P  N      +   Y    R ++A+++   I + ++
Sbjct: 511 ACRMHRNAEIAEVAAKKLLELEP-GNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNL 567



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 16/202 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  +  IT   K G +++A ++F     K+ V +NSMI+ YA++G    A  +F  M  
Sbjct: 368 VFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRL 427

Query: 75  RNL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELE 125
             +    +++   +    +  KVKE RE+F+ M      RP    ++ M+    R G +E
Sbjct: 428 AGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVE 487

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNE-----AKKLLDAMPSKNIVSWNSMLSG 180
           +A +L   +P + D   W A++ G  ++    E     AKKLL+  P  N   +  +   
Sbjct: 488 EAFDLIKNMPVEPDAVIWGALM-GACRMHRNAEIAEVAAKKLLELEPG-NAGPYVLLSHI 545

Query: 181 YTKNGEMHLASKFFEAMEERDV 202
           YT  G    ASK  + +  R++
Sbjct: 546 YTSVGRWEDASKMRKFISSRNL 567


>gi|449523934|ref|XP_004168978.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 248/645 (38%), Positives = 375/645 (58%), Gaps = 62/645 (9%)

Query: 105 RPDLFSWALMI--TCYTR-KGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKK 161
           RP LF+ A     TC++  K    +  E + L          N  ++   + G  NEA++
Sbjct: 29  RPVLFNIAFQFKQTCFSSSKANSFQVPEFYSL----------NKKISYLIRTGRINEARE 78

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDD--LD 219
           L D+    N ++WN M++ Y K  EM  A + FE M  RD+VSWNLML GY+      ++
Sbjct: 79  LFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNRDIVSWNLMLSGYISCGGKFVE 138

Query: 220 SAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ 279
            A   F ++PE + VSW TMLSGYA++G M +A  LF++MP RNVV+WNAM++ Y+  G 
Sbjct: 139 RARNMFDQMPETDCVSWNTMLSGYAKSGTMDKAEELFNEMPERNVVSWNAMVSGYLMNGH 198

Query: 280 IEEAARLFIEMPERNPVS------------------------------------WTTMID 303
           +E+A   F  MP+R+  S                                    + T+I 
Sbjct: 199 VEKAIEFFKLMPKRDSASLRALVSGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIA 258

Query: 304 GYVRIAKLDEARRLLDQMPY--------KNIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
           GY +     EAR+L D++P         +N+ +  +MI  YV+   +  A ++FDK+   
Sbjct: 259 GYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVER 318

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMG 415
           D   WN MI GY Q   M EA NLF +M   D ++WN MI+G+++I  +  A  +F+ + 
Sbjct: 319 DTFSWNTMISGYVQILDMKEASNLFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIP 378

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
           ++ + VSWN++ISG+ +NE +  A+ IF+ M  EGKK D  TL+  LSACA L  L LG 
Sbjct: 379 EK-SLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGT 437

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD-PVDVISWNSLIAGYAIN 534
           QIH L  K+ ++ DL + NSL+TMY++CG I  A ++F + +   DVISWN++I GYA +
Sbjct: 438 QIHQLVTKA-FIADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYH 496

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEH 594
           G ATEA++LF+ M    V P  +TFI VL+AC+H GL++ G + F  M   + I+P VEH
Sbjct: 497 GFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEH 556

Query: 595 YACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE 654
           YA ++D++ R G+L+EA  ++  M  +P+  +WG LLGAC++H N+++ R A E L +L+
Sbjct: 557 YAALVDIIGRHGQLEEAMSLINSMPCEPDKAVWGALLGACKVHNNVEMARAAAEALMKLQ 616

Query: 655 PQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
           P+ ++ Y LL NM+A+ GRWD+  ++R  ME +  QK  G S ++
Sbjct: 617 PESSAPYVLLHNMYADVGRWDDAAEMRTMMEKNNVQKDAGYSRVD 661



 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 193/639 (30%), Positives = 330/639 (51%), Gaps = 69/639 (10%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           ++ NKKI+ L ++GR+ EA ++F      NT+T+N MI+AY K   +  AR+LFE+MP R
Sbjct: 58  YSLNKKISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNR 117

Query: 76  NLVSWNSMIAGYLH--NDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDL 133
           ++VSWN M++GY+      V+ AR +FD+M   D  SW  M++ Y + G ++KA ELF+ 
Sbjct: 118 DIVSWNLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGTMDKAEELFNE 177

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
           +P + +   WNAMV+GY   G+  +A +    MP ++  S  +++SG  +N ++  A + 
Sbjct: 178 MPER-NVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALVSGLIQNDKLVEAERI 236

Query: 194 F----EAMEERDVV-SWNLMLDGYVELDDLDSAWKFFQKIP--------EQNVVSWVTML 240
                  + + D+V ++N ++ GY +      A K F +IP         +NV+SW +M+
Sbjct: 237 LLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMI 296

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTT 300
             Y R G ++ AR LFD+M  R+  +WN MI+ YVQ   ++EA+ LF  MPE + +SW  
Sbjct: 297 MCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRMPEPDTLSWNM 356

Query: 301 MIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH----D 356
           MI G+  I  L  A  L  ++P K++ +  +MISGY +N+    A  IF ++       D
Sbjct: 357 MISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPD 416

Query: 357 VVCWNVMIKGYAQCGRMDEAINL-FRQMVNK----DIVTWNTMIAGYAQIRQMDDAVKIF 411
               + ++   A  G +D  +     Q+V K    D+   N+++  Y++   + +A  +F
Sbjct: 417 RHTLSSILSACA--GLVDLVLGTQIHQLVTKAFIADLPINNSLVTMYSRCGAIVEARMVF 474

Query: 412 EEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAAL 471
           +EM  +R+ +SWNA+I G+  + F  +AL++F LM Q   +  + T    L+ACAH   +
Sbjct: 475 DEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLI 534

Query: 472 QLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGY 531
           + GR+                 NS++  +    ++++   L      VD+I         
Sbjct: 535 EEGRREF---------------NSMVNTHGIKPQVEHYAAL------VDII--------- 564

Query: 532 AINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE-VYAIEP 590
             +G   EA+ L   M  E   PD   +  +L AC     V   +++     E +  ++P
Sbjct: 565 GRHGQLEEAMSLINSMPCE---PDKAVWGALLGACK----VHNNVEMARAAAEALMKLQP 617

Query: 591 LVE-HYACMIDLLSRAGRLDEAFEMVKGMK---IKPNAG 625
                Y  + ++ +  GR D+A EM   M+   ++ +AG
Sbjct: 618 ESSAPYVLLHNMYADVGRWDDAAEMRTMMEKNNVQKDAG 656



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 122/422 (28%), Positives = 209/422 (49%), Gaps = 38/422 (9%)

Query: 11  KGSYVFNQNKKITQLGKSGRVEEAIKIFSQM--------SQKNTVTYNSMISAYAKNGRV 62
           KG  V   N  I   G+ G   EA K+F ++        S++N +++NSMI  Y + G +
Sbjct: 246 KGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDI 305

Query: 63  NDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKG 122
             AR+LF++M +R+  SWN+MI+GY+    +KEA  LF +M  PD  SW +MI+ ++  G
Sbjct: 306 VSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRMPEPDTLSWNMMISGFSEIG 365

Query: 123 ELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------PSKNIVSWNS 176
            L+ A +LF  +P K     WN+M++GY K  +Y  A  +   M      P ++ +S  S
Sbjct: 366 SLKLAHDLFKRIPEK-SLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLS--S 422

Query: 177 MLSGYTKNGEMHLASKFFEAMEE---RDVVSWNLMLDGYVELDDLDSAWKFFQKIP-EQN 232
           +LS      ++ L ++  + + +    D+   N ++  Y     +  A   F ++  +++
Sbjct: 423 ILSACAGLVDLVLGTQIHQLVTKAFIADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRD 482

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFI 288
           V+SW  M+ GYA +G   EA +LFD M   NV    + + +++ A    G IEE  R F 
Sbjct: 483 VISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEGRREFN 542

Query: 289 EMPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ---NK 340
            M   + +      +  ++D   R  +L+EA  L++ MP +   A    + G  +   N 
Sbjct: 543 SMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPCEPDKAVWGALLGACKVHNNV 602

Query: 341 RMDE-ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYA 399
            M   A +   K+       + ++   YA  GR D+A  + R M+ K+ V  +   AGY+
Sbjct: 603 EMARAAAEALMKLQPESSAPYVLLHNMYADVGRWDDAAEM-RTMMEKNNVQKD---AGYS 658

Query: 400 QI 401
           ++
Sbjct: 659 RV 660


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/570 (39%), Positives = 349/570 (61%), Gaps = 3/570 (0%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           NA +A  A+ GN   A+   +AMP +   S+N++L+GY +N     A   F  M  RD+ 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 204 SWNLMLDGY-VELDDLDSAWKFFQKIP-EQNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
           S+N ++ G  +    L  A      IP   +VVS+ ++L GY R+G + +A RLF QMP 
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           RN V++  ++   +  G++ EA RLF EMP+R+ V+WT M+ GY +  ++ EAR L D+M
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 322 PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
           P +N+ + TAMISGY QN  ++ A ++F+ +   + V W  M+ GY Q G +++A  LF 
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFN 260

Query: 382 QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALK 441
            M    +   N M+ G+ Q   +D A  +FE+M +R +  +W+A+I  + QNEF ++AL 
Sbjct: 261 AMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDG-TWSAMIKAYEQNEFLMEALS 319

Query: 442 IFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYA 501
            F  M   G + ++ ++   L+ CA LA L  GR++H   ++  +  D+F  ++LITMY 
Sbjct: 320 TFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYI 379

Query: 502 KCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIG 561
           KCG +  A+ +F   +P D++ WNS+I GYA +G   +A+ +F +M + G++PD +T+IG
Sbjct: 380 KCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIG 439

Query: 562 VLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIK 621
            L+ACS+ G V  G ++F  MT   +I P  EHY+CM+DLL R+G ++EAF+++K M ++
Sbjct: 440 ALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVE 499

Query: 622 PNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVR 681
           P+A IWG L+GACRMH+N ++   A +KL ELEP     Y LLS+++   GRW++  K+R
Sbjct: 500 PDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMR 559

Query: 682 VSMEGSGAQKQPGCSWIEVKNQIHTFLSGD 711
             +      K PGCSWIE   ++H F SGD
Sbjct: 560 KFISSRNLNKSPGCSWIEYDKRVHLFTSGD 589



 Score =  245 bits (625), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 158/536 (29%), Positives = 266/536 (49%), Gaps = 55/536 (10%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N +I  L ++G +E A   F  M  + T +YN++++ Y +N   + A  LF +MP R+L 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 79  SWNSMIAGY-LHNDKVKEARELFDKM-FRPDLFSWALMITCYTRKGELEKARELFDLLPN 136
           S+N++I+G  L    + +A      + F P + S+  ++  Y R G L  A  LF  +P 
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 137 KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEA 196
           +   + +  ++ G    G  NEA++L D MP +++V+W +MLSGY + G +  A   F+ 
Sbjct: 141 RNHVS-YTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDE 199

Query: 197 MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF 256
           M +R+VVSW  M+ GY +  +++ A K F+ +PE+N VSW  ML GY + G + +A  LF
Sbjct: 200 MPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELF 259

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
           + MP   V A NAM+  + QRG ++ A  +F +M ER+  +W+ MI  Y +   L EA  
Sbjct: 260 NAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALS 319

Query: 317 LLDQMPYK----NIAAQTAMISGYVQNKRMDEANQI--------FDKIGTHDVVCWNVMI 364
              +M ++    N  +  ++++       +D   ++        FD     DV   + +I
Sbjct: 320 TFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDM----DVFAVSALI 375

Query: 365 KGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
             Y +CG +D+A  +F     KDIV WN+MI GYAQ             +G++       
Sbjct: 376 TMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQ-----------HGLGEQ------- 417

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI-HHLAIK 483
                         AL IF  M   G   D  T   AL+AC++   ++ GR+I + + + 
Sbjct: 418 --------------ALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVN 463

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGNA 537
           S         + ++ +  + G ++ A  L K+  PV  D + W +L+    ++ NA
Sbjct: 464 SSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNM-PVEPDAVIWGALMGACRMHRNA 518



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 166/358 (46%), Gaps = 24/358 (6%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           I+   ++G V  A K+F  M ++N V++ +M+  Y + G V DA +LF  MP+  + + N
Sbjct: 212 ISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACN 271

Query: 82  SMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF------DLLP 135
           +M+ G+     V  A+ +F+KM   D  +W+ MI  Y +   L +A   F       + P
Sbjct: 272 AMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRP 331

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAK-KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           N         + A  A +    E    +L      ++ + +++++ Y K G +  A + F
Sbjct: 332 NYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVF 391

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRML 250
              E +D+V WN M+ GY +    + A   F  +       + ++++  L+  +  G++ 
Sbjct: 392 HTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVK 451

Query: 251 EARRLFDQMPIRNVV-----AWNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMIDG 304
           E R +F+ M + + +      ++ M+    + G +EEA  L   MP E + V W  ++ G
Sbjct: 452 EGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALM-G 510

Query: 305 YVRIAKLDE-----ARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV 357
             R+ +  E     A++LL+  P  N      +   Y    R ++A+++   I + ++
Sbjct: 511 ACRMHRNAEIAEFAAKKLLELEP-GNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNL 567



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 16/202 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  +  IT   K G +++A ++F     K+ V +NSMI+ YA++G    A  +F  M  
Sbjct: 368 VFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRL 427

Query: 75  RNL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELE 125
             +    +++   +    +  KVKE RE+F+ M      RP    ++ M+    R G +E
Sbjct: 428 AGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVE 487

Query: 126 KARELFDLLPNKEDTACWNAMVAGY-----AKIGNYNEAKKLLDAMPSKNIVSWNSMLSG 180
           +A +L   +P + D   W A++        A+I  +  AKKLL+  P  N   +  +   
Sbjct: 488 EAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEF-AAKKLLELEPG-NAGPYVLLSHI 545

Query: 181 YTKNGEMHLASKFFEAMEERDV 202
           YT  G    ASK  + +  R++
Sbjct: 546 YTSVGRWEDASKMRKFISSRNL 567


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/570 (39%), Positives = 349/570 (61%), Gaps = 3/570 (0%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           NA +A  A+ GN   A+   +AMP +   S+N++L+GY +N     A   F  M  RD+ 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 204 SWNLMLDGY-VELDDLDSAWKFFQKIP-EQNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
           S+N ++ G  +    L  A      IP   +VVS+ ++L GY R+G + +A RLF QMP 
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           RN V++  ++   +  G++ EA RLF EMP+R+ V+WT M+ GY +  ++ EAR L D+M
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 322 PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
           P +N+ + TAMISGY QN  ++ A ++F+ +   + V W  M+ GY Q G +++A  LF 
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFN 260

Query: 382 QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALK 441
            M    +   N M+ G+ Q   +D A  +FE+M +R +  +W+A+I  + QNEF ++AL 
Sbjct: 261 AMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDG-TWSAMIKAYEQNEFLMEALS 319

Query: 442 IFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYA 501
            F  M   G + ++ ++   L+ CA LA L  GR++H   ++  +  D+F  ++LITMY 
Sbjct: 320 TFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYI 379

Query: 502 KCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIG 561
           KCG +  A+ +F   +P D++ WNS+I GYA +G   +A+ +F +M + G++PD +T+IG
Sbjct: 380 KCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIG 439

Query: 562 VLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIK 621
            L+ACS+ G V  G ++F  MT   +I P  EHY+CM+DLL R+G ++EAF+++K M ++
Sbjct: 440 ALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVE 499

Query: 622 PNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVR 681
           P+A IWG L+GACRMH+N ++   A +KL ELEP     Y LLS+++   GRW++  K+R
Sbjct: 500 PDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMR 559

Query: 682 VSMEGSGAQKQPGCSWIEVKNQIHTFLSGD 711
             +      K PGCSWIE   ++H F SGD
Sbjct: 560 KFISSRNLNKSPGCSWIEYDKRVHLFTSGD 589



 Score =  244 bits (624), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 158/536 (29%), Positives = 266/536 (49%), Gaps = 55/536 (10%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N +I  L ++G +E A   F  M  + T +YN++++ Y +N   + A  LF +MP R+L 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 79  SWNSMIAGY-LHNDKVKEARELFDKM-FRPDLFSWALMITCYTRKGELEKARELFDLLPN 136
           S+N++I+G  L    + +A      + F P + S+  ++  Y R G L  A  LF  +P 
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 137 KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEA 196
           +   + +  ++ G    G  NEA++L D MP +++V+W +MLSGY + G +  A   F+ 
Sbjct: 141 RNHVS-YTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDE 199

Query: 197 MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF 256
           M +R+VVSW  M+ GY +  +++ A K F+ +PE+N VSW  ML GY + G + +A  LF
Sbjct: 200 MPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELF 259

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
           + MP   V A NAM+  + QRG ++ A  +F +M ER+  +W+ MI  Y +   L EA  
Sbjct: 260 NAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALS 319

Query: 317 LLDQMPYK----NIAAQTAMISGYVQNKRMDEANQI--------FDKIGTHDVVCWNVMI 364
              +M ++    N  +  ++++       +D   ++        FD     DV   + +I
Sbjct: 320 TFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDM----DVFAVSALI 375

Query: 365 KGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
             Y +CG +D+A  +F     KDIV WN+MI GYAQ             +G++       
Sbjct: 376 TMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQ-----------HGLGEQ------- 417

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI-HHLAIK 483
                         AL IF  M   G   D  T   AL+AC++   ++ GR+I + + + 
Sbjct: 418 --------------ALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVN 463

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGNA 537
           S         + ++ +  + G ++ A  L K+  PV  D + W +L+    ++ NA
Sbjct: 464 SSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNM-PVEPDAVIWGALMGACRMHRNA 518



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 166/358 (46%), Gaps = 24/358 (6%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           I+   ++G V  A K+F  M ++N V++ +M+  Y + G V DA +LF  MP+  + + N
Sbjct: 212 ISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACN 271

Query: 82  SMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF------DLLP 135
           +M+ G+     V  A+ +F+KM   D  +W+ MI  Y +   L +A   F       + P
Sbjct: 272 AMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRP 331

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAK-KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           N         + A  A +    E    +L      ++ + +++++ Y K G +  A + F
Sbjct: 332 NYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVF 391

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRML 250
              E +D+V WN M+ GY +    + A   F  +       + ++++  L+  +  G++ 
Sbjct: 392 HTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVK 451

Query: 251 EARRLFDQMPIRNVV-----AWNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMIDG 304
           E R +F+ M + + +      ++ M+    + G +EEA  L   MP E + V W  ++ G
Sbjct: 452 EGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALM-G 510

Query: 305 YVRIAKLDE-----ARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV 357
             R+ +  E     A++LL+  P  N      +   Y    R ++A+++   I + ++
Sbjct: 511 ACRMHRNAEIAEFAAKKLLELEP-GNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNL 567



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 16/202 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  +  IT   K G +++A ++F     K+ V +NSMI+ YA++G    A  +F  M  
Sbjct: 368 VFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRL 427

Query: 75  RNL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELE 125
             +    +++   +    +  KVKE RE+F+ M      RP    ++ M+    R G +E
Sbjct: 428 AGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVE 487

Query: 126 KARELFDLLPNKEDTACWNAMVAGY-----AKIGNYNEAKKLLDAMPSKNIVSWNSMLSG 180
           +A +L   +P + D   W A++        A+I  +  AKKLL+  P  N   +  +   
Sbjct: 488 EAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEF-AAKKLLELEPG-NAGPYVLLSHI 545

Query: 181 YTKNGEMHLASKFFEAMEERDV 202
           YT  G    ASK  + +  R++
Sbjct: 546 YTSVGRWEDASKMRKFISSRNL 567


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 233/596 (39%), Positives = 353/596 (59%), Gaps = 33/596 (5%)

Query: 115 ITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSW 174
           I+  +R G++ +AR+ FD L  K     WN++V+GY   G   EA+++ D MP +NIVSW
Sbjct: 24  ISRLSRIGQINEARKFFDSLRYKA-IGSWNSIVSGYFANGLPREARQMFDEMPERNIVSW 82

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
           N ++SGY KN  +  A   FE M ER+VVSW  M+ GYV+   +  A   F ++PE+N V
Sbjct: 83  NGLVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMPERNEV 142

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
           SW  M  G    GR+ +AR+L+D MP ++VVA   MI    + G+++EA  +F EM ERN
Sbjct: 143 SWTVMFGGLIDGGRIDDARKLYDMMPGKDVVASTNMIGGLCREGRVDEAREIFDEMRERN 202

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
            ++WTTMI GY +  ++D AR+L + MP K   + T+M+ GY  + R+++A + F+ +  
Sbjct: 203 VITWTTMITGYGQNKRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPM 262

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
             V+  N MI    + G + +A  +F QM ++D  TW  MI  Y             E  
Sbjct: 263 KPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNATWRGMIKAY-------------ERK 309

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
           G                   F L+AL++F  M ++G +    +L   LS CA LA+LQ G
Sbjct: 310 G-------------------FELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYG 350

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
           RQ+H   ++  +  D++V + L+TMY KCG +  A+L+F      D+I WNS+I+GYA +
Sbjct: 351 RQVHAHLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASH 410

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEH 594
           G   EA+K+F EM + G  P+ VT I +L+ACS+ G ++ GL++FE M   + + P VEH
Sbjct: 411 GLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGLEIFESMESKFCVTPTVEH 470

Query: 595 YACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE 654
           Y+C +D+L RAG++D+A E++  M IKP+A +WG LLGAC+ H  + L  +A +KL E+E
Sbjct: 471 YSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFEIE 530

Query: 655 PQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSG 710
           P+    Y LLS+++A   +W +V ++R +M      K PGCSWIEV  ++H F  G
Sbjct: 531 PENAGPYILLSSINASRSKWGDVAEMRKNMRTKNVSKFPGCSWIEVGKKVHMFTRG 586



 Score =  265 bits (676), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 166/548 (30%), Positives = 286/548 (52%), Gaps = 57/548 (10%)

Query: 17  NQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRN 76
           N + +I++L + G++ EA K F  +  K   ++NS++S Y  NG   +AR++F++MP+RN
Sbjct: 19  NNSFEISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMPERN 78

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN 136
           +VSWN +++GY+ N  ++EAR +F+ M   ++ SW  M+  Y ++G + +A  LF  +P 
Sbjct: 79  IVSWNGLVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMPE 138

Query: 137 KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEA 196
           + + + W  M  G    G  ++A+KL D MP K++V+  +M+ G  + G +  A + F+ 
Sbjct: 139 RNEVS-WTVMFGGLIDGGRIDDARKLYDMMPGKDVVASTNMIGGLCREGRVDEAREIFDE 197

Query: 197 MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF 256
           M ER+V++W  M+ GY +   +D A K F+ +PE+  VSW +ML GY  +GR+ +A   F
Sbjct: 198 MRERNVITWTTMITGYGQNKRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFF 257

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
           + MP++ V+A NAMI A  + G+I +A R+F +M +R+  +W  MI  Y R     EA  
Sbjct: 258 EVMPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNATWRGMIKAYERKGFELEALE 317

Query: 317 LLDQMPYKNIAAQ-TAMIS--------GYVQNKRMDEANQI---FDKIGTHDVVCWNVMI 364
           L  QM  + +     ++IS          +Q  R   A+ +   FD     DV   +V++
Sbjct: 318 LFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDG----DVYVASVLM 373

Query: 365 KGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
             Y +CG + +A  +F +  +KDI+ WN++I+GYA     ++A+K+F EM          
Sbjct: 374 TMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEEALKVFHEMP--------- 424

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
             +SG + N+                      TL   L+AC++   L+ G +I   +++S
Sbjct: 425 --LSGTMPNKV---------------------TLIAILTACSYGGKLEEGLEIFE-SMES 460

Query: 485 GYVNDLFVGN--SLITMYAKCGRIQNA-ELLFKDADPVDVISWNSLIAGYAINGN----A 537
            +     V +    + M  + G++  A EL+       D   W +L+     +       
Sbjct: 461 KFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGACKTHSRLDLAE 520

Query: 538 TEAIKLFE 545
             A KLFE
Sbjct: 521 VAAKKLFE 528



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/356 (30%), Positives = 182/356 (51%), Gaps = 27/356 (7%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G  V      I  L + GRV+EA +IF +M ++N +T+ +MI+ Y +N RV+ ARKLFE 
Sbjct: 169 GKDVVASTNMIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYGQNKRVDVARKLFEV 228

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           MP++  VSW SM+ GY  + ++++A E F+ M    + +   MI      GE+ KAR +F
Sbjct: 229 MPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVALGEVGEIVKARRVF 288

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI-VSWNSMLS----------- 179
           D + ++ D A W  M+  Y + G   EA +L   M  + +  S+ S++S           
Sbjct: 289 DQMEDR-DNATWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASL 347

Query: 180 GYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTM 239
            Y +    HL    F+     DV   ++++  YV+  +L  A   F + P ++++ W ++
Sbjct: 348 QYGRQVHAHLVRCQFDG----DVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSI 403

Query: 240 LSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
           +SGYA +G   EA ++F +MP+     N V   A++ A    G++EE   +F  M  +  
Sbjct: 404 ISGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGLEIFESMESKFC 463

Query: 296 VS-----WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ-TAMISGYVQNKRMDEA 345
           V+     ++  +D   R  K+D+A  L++ M  K  A    A++     + R+D A
Sbjct: 464 VTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGACKTHSRLDLA 519


>gi|449433223|ref|XP_004134397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
 gi|449487596|ref|XP_004157705.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 675

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/631 (37%), Positives = 359/631 (56%), Gaps = 35/631 (5%)

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P   +    N+ ++   + G   +A+KL D MP +NIV+WN+M+ GY  NG        F
Sbjct: 41  PTFPNLKLLNSEISNCMRNGLVEQAQKLFDGMPQRNIVTWNAMIRGYFLNGRCSDGISLF 100

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
             M ERDV S+N ++ G ++  D+D A   F  +P ++VVSW +M++G  RNG + EA +
Sbjct: 101 RRMPERDVFSYNTVIGGLMQCGDVDGAKDIFDLMPFRDVVSWNSMIAGCIRNGLLEEAIQ 160

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
           LFD MP++NV++WN +I   V  G+++ A   F +M  R+ VSWT MI G  R  +LDEA
Sbjct: 161 LFDGMPLKNVISWNLIIGGLVNCGKLDSAGEYFGKMSRRDLVSWTIMISGLCRAGRLDEA 220

Query: 315 RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMD 374
           R L + MP K+     AM+ GY++N +++ A ++F  +   +   WN ++ G+    R+D
Sbjct: 221 RGLFNNMPTKDARVWNAMMVGYIENGKIEMAEELFGIMPERNFGSWNKLVNGFVGSQRVD 280

Query: 375 EAINLFRQMVNK-------------------------------DIVTWNTMIAGYAQIRQ 403
           +A  LF +M +K                               +I +W  +I GY  I +
Sbjct: 281 DARKLFMEMPDKCQKTWNNIVLAYIRNGLVLQTHALLEKIPYGNIASWTNLIVGYFGIGE 340

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS 463
           +  AV+IFE M + ++T  WNA I G  +N+   + LK+F  M + G   D +T    L+
Sbjct: 341 VGMAVEIFESM-QYKDTTVWNATIFGLGENDKGEEGLKLFTRMIRLGPCLDKATFTSILT 399

Query: 464 ACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
            C+ L  LQLGRQ H L +K G+   + V N++I MYA+CG +  A + F      DVIS
Sbjct: 400 ICSDLETLQLGRQTHALILKEGFNGFVAVSNAMINMYARCGNMDCAFMEFSSMSDRDVIS 459

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMT 583
           WNS+I G+A +GN  +A+++FE+M +  + P+ +TFIGVLSACSH GL+D G   F  M 
Sbjct: 460 WNSMICGFAHHGNGEDALEMFEKMRLANIEPNHITFIGVLSACSHKGLIDKGRYYFNFMK 519

Query: 584 EVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMK---IKPNAGIWGTLLGACRMHQNI 640
              ++ PL+EHY C++DL  R G +DEA   +  MK   I+    +WG LLGACR+H+N 
Sbjct: 520 NECSLRPLIEHYTCLVDLFGRFGLIDEALSFLAEMKAEEIEVPPSVWGALLGACRIHKNY 579

Query: 641 KLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEV 700
            +G IA EK+ E EP     Y +L+ M+   G+ +  EK+   M+ +G +KQPGCSWIEV
Sbjct: 580 DVGVIAGEKVLEKEPHNAGVYLILAEMYLRNGKRENAEKIFARMKNNGVKKQPGCSWIEV 639

Query: 701 KNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
            N  + FLSGD        IC+ +K +  +I
Sbjct: 640 NNCGYVFLSGDCSNPHFDRICSVVKLVNLEI 670



 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 164/536 (30%), Positives = 265/536 (49%), Gaps = 46/536 (8%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           N    NS IS   +NG V  A+KLF+ MPQRN+V+WN+MI GY  N +  +   LF +M 
Sbjct: 45  NLKLLNSEISNCMRNGLVEQAQKLFDGMPQRNIVTWNAMIRGYFLNGRCSDGISLFRRMP 104

Query: 105 RPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLD 164
             D+FS+  +I    + G+++ A+++FDL+P + D   WN+M+AG  + G   EA +L D
Sbjct: 105 ERDVFSYNTVIGGLMQCGDVDGAKDIFDLMPFR-DVVSWNSMIAGCIRNGLLEEAIQLFD 163

Query: 165 AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKF 224
            MP KN++SWN ++ G    G++  A ++F  M  RD+VSW +M+ G      LD A   
Sbjct: 164 GMPLKNVISWNLIIGGLVNCGKLDSAGEYFGKMSRRDLVSWTIMISGLCRAGRLDEARGL 223

Query: 225 FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA 284
           F  +P ++   W  M+ GY  NG++  A  LF  MP RN  +WN ++  +V   ++++A 
Sbjct: 224 FNNMPTKDARVWNAMMVGYIENGKIEMAEELFGIMPERNFGSWNKLVNGFVGSQRVDDAR 283

Query: 285 RLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDE 344
           +LF+EMP++   +W  ++  Y+R   + +   LL+++PY NIA+ T +I GY     +  
Sbjct: 284 KLFMEMPDKCQKTWNNIVLAYIRNGLVLQTHALLEKIPYGNIASWTNLIVGYFGIGEVGM 343

Query: 345 ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV-------------------- 384
           A +IF+ +   D   WN  I G  +  + +E + LF +M+                    
Sbjct: 344 AVEIFESMQYKDTTVWNATIFGLGENDKGEEGLKLFTRMIRLGPCLDKATFTSILTICSD 403

Query: 385 -------------------NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
                              N  +   N MI  YA+   MD A   F  M   R+ +SWN+
Sbjct: 404 LETLQLGRQTHALILKEGFNGFVAVSNAMINMYARCGNMDCAFMEFSSMSD-RDVISWNS 462

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485
           +I GF  +    DAL++F  M     + +H T    LSAC+H   +  GR   +      
Sbjct: 463 MICGFAHHGNGEDALEMFEKMRLANIEPNHITFIGVLSACSHKGLIDKGRYYFNFMKNEC 522

Query: 486 YVNDLFVG-NSLITMYAKCGRIQNAELLFKD--ADPVDVIS--WNSLIAGYAINGN 536
            +  L      L+ ++ + G I  A     +  A+ ++V    W +L+    I+ N
Sbjct: 523 SLRPLIEHYTCLVDLFGRFGLIDEALSFLAEMKAEEIEVPPSVWGALLGACRIHKN 578



 Score =  254 bits (649), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 139/435 (31%), Positives = 229/435 (52%), Gaps = 40/435 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N +I+   ++G VE+A K+F  M Q+N VT+N+MI  Y  NGR +D   LF +MP+R++ 
Sbjct: 50  NSEISNCMRNGLVEQAQKLFDGMPQRNIVTWNAMIRGYFLNGRCSDGISLFRRMPERDVF 109

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           S+N++I G +    V  A+++FD M   D+ SW  MI    R G LE+A +LFD +P K 
Sbjct: 110 SYNTVIGGLMQCGDVDGAKDIFDLMPFRDVVSWNSMIAGCIRNGLLEEAIQLFDGMPLK- 168

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           +   WN ++ G    G  + A +    M  +++VSW  M+SG  + G +  A   F  M 
Sbjct: 169 NVISWNLIIGGLVNCGKLDSAGEYFGKMSRRDLVSWTIMISGLCRAGRLDEARGLFNNMP 228

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
            +D   WN M+ GY+E   ++ A + F  +PE+N  SW  +++G+  + R+ +AR+LF +
Sbjct: 229 TKDARVWNAMMVGYIENGKIEMAEELFGIMPERNFGSWNKLVNGFVGSQRVDDARKLFME 288

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
           MP +    WN ++ AY++ G + +   L  ++P  N  SWT +I GY  I ++  A  + 
Sbjct: 289 MPDKCQKTWNNIVLAYIRNGLVLQTHALLEKIPYGNIASWTNLIVGYFGIGEVGMAVEIF 348

Query: 319 DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI-------------------------- 352
           + M YK+     A I G  +N + +E  ++F ++                          
Sbjct: 349 ESMQYKDTTVWNATIFGLGENDKGEEGLKLFTRMIRLGPCLDKATFTSILTICSDLETLQ 408

Query: 353 ---GTHDVV----------CWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYA 399
               TH ++            N MI  YA+CG MD A   F  M ++D+++WN+MI G+A
Sbjct: 409 LGRQTHALILKEGFNGFVAVSNAMINMYARCGNMDCAFMEFSSMSDRDVISWNSMICGFA 468

Query: 400 QIRQMDDAVKIFEEM 414
                +DA+++FE+M
Sbjct: 469 HHGNGEDALEMFEKM 483



 Score =  215 bits (548), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 152/518 (29%), Positives = 249/518 (48%), Gaps = 24/518 (4%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF+ N  I  L + G V+ A  IF  M  ++ V++NSMI+   +NG + +A +LF+ MP 
Sbjct: 108 VFSYNTVIGGLMQCGDVDGAKDIFDLMPFRDVVSWNSMIAGCIRNGLLEEAIQLFDGMPL 167

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           +N++SWN +I G ++  K+  A E F KM R DL SW +MI+   R G L++AR LF+ +
Sbjct: 168 KNVISWNLIIGGLVNCGKLDSAGEYFGKMSRRDLVSWTIMISGLCRAGRLDEARGLFNNM 227

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P K D   WNAM+ GY + G    A++L   MP +N  SWN +++G+  +  +  A K F
Sbjct: 228 PTK-DARVWNAMMVGYIENGKIEMAEELFGIMPERNFGSWNKLVNGFVGSQRVDDARKLF 286

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
             M ++   +WN ++  Y+    +       +KIP  N+ SW  ++ GY   G +  A  
Sbjct: 287 MEMPDKCQKTWNNIVLAYIRNGLVLQTHALLEKIPYGNIASWTNLIVGYFGIGEVGMAVE 346

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV----SWTTMIDGYVRIAK 310
           +F+ M  ++   WNA I    +  + EE  +LF  M    P     ++T+++     +  
Sbjct: 347 IFESMQYKDTTVWNATIFGLGENDKGEEGLKLFTRMIRLGPCLDKATFTSILTICSDLET 406

Query: 311 LDEARR----LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG 366
           L   R+    +L +     +A   AMI+ Y +   MD A   F  +   DV+ WN MI G
Sbjct: 407 LQLGRQTHALILKEGFNGFVAVSNAMINMYARCGNMDCAFMEFSSMSDRDVISWNSMICG 466

Query: 367 YAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
           +A  G  ++A+ +F +M    +  + +T+  +++  +    +D     F  M   +N  S
Sbjct: 467 FAHHGNGEDALEMFEKMRLANIEPNHITFIGVLSACSHKGLIDKGRYYFNFM---KNECS 523

Query: 423 WNALISGF-----LQNEFHL--DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
              LI  +     L   F L  +AL     M  E  +   S     L AC       +G 
Sbjct: 524 LRPLIEHYTCLVDLFGRFGLIDEALSFLAEMKAEEIEVPPSVWGALLGACRIHKNYDVG- 582

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
            I    +     ++  V   L  MY + G+ +NAE +F
Sbjct: 583 VIAGEKVLEKEPHNAGVYLILAEMYLRNGKRENAEKIF 620



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 93/206 (45%), Gaps = 17/206 (8%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
            +V   N  I    + G ++ A   FS MS ++ +++NSMI  +A +G   DA ++FE+M
Sbjct: 424 GFVAVSNAMINMYARCGNMDCAFMEFSSMSDRDVISWNSMICGFAHHGNGEDALEMFEKM 483

Query: 73  PQRNL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGE 123
              N+    +++  +++   H   + + R  F+ M      RP +  +  ++  + R G 
Sbjct: 484 RLANIEPNHITFIGVLSACSHKGLIDKGRYYFNFMKNECSLRPLIEHYTCLVDLFGRFGL 543

Query: 124 LEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYN----EAKKLLDAMPSKNIVSWNS 176
           +++A      +  +E     + W A++       NY+      +K+L+  P  N   +  
Sbjct: 544 IDEALSFLAEMKAEEIEVPPSVWGALLGACRIHKNYDVGVIAGEKVLEKEP-HNAGVYLI 602

Query: 177 MLSGYTKNGEMHLASKFFEAMEERDV 202
           +   Y +NG+   A K F  M+   V
Sbjct: 603 LAEMYLRNGKRENAEKIFARMKNNGV 628


>gi|449454362|ref|XP_004144924.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 247/645 (38%), Positives = 374/645 (57%), Gaps = 62/645 (9%)

Query: 105 RPDLFSWALMI--TCYTR-KGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKK 161
           RP LF+       TC++  K    +  E + L          N  ++   + G  NEA++
Sbjct: 29  RPVLFNIVFQFKQTCFSSSKANSFQVPEFYSL----------NKKISYLIRTGRINEARE 78

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDD--LD 219
           L D+    N ++WN M++ Y K  EM  A + FE M  RD+VSWNLML GY+      ++
Sbjct: 79  LFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNRDIVSWNLMLSGYISCGGKFVE 138

Query: 220 SAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ 279
            A   F ++PE + VSW TMLSGYA++G M +A  LF++MP RNVV+WNAM++ Y+  G 
Sbjct: 139 RARNMFDQMPETDCVSWNTMLSGYAKSGMMDKAEELFNEMPERNVVSWNAMVSGYLMNGH 198

Query: 280 IEEAARLFIEMPERNPVS------------------------------------WTTMID 303
           +E+A   F  MP+R+  S                                    + T+I 
Sbjct: 199 VEKAIEFFKLMPKRDSASLRALISGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIA 258

Query: 304 GYVRIAKLDEARRLLDQMPY--------KNIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
           GY +     EAR+L D++P         +N+ +  +MI  YV+   +  A ++FDK+   
Sbjct: 259 GYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVER 318

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMG 415
           D   WN MI GY Q   M EA NLF +M   D ++WN MI+G+++I  +  A  +F+ + 
Sbjct: 319 DTFSWNTMISGYVQILDMKEASNLFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIP 378

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
           ++ + VSWN++ISG+ +NE +  A+ IF+ M  EGKK D  TL+  LSACA L  L LG 
Sbjct: 379 EK-SLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGT 437

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD-PVDVISWNSLIAGYAIN 534
           QIH L  K+ ++ DL + NSL+TMY++CG I  A ++F + +   DVISWN++I GYA +
Sbjct: 438 QIHQLVTKA-FIADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYH 496

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEH 594
           G ATEA++LF+ M    V P  +TFI VL+AC+H GL++ G + F  M   + I+P VEH
Sbjct: 497 GFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEH 556

Query: 595 YACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE 654
           YA ++D++ R G+L+EA  ++  M  +P+  +WG LLGAC++H N+++ R A E L +L+
Sbjct: 557 YAALVDIIGRHGQLEEAMSLINSMPCEPDKAVWGALLGACKVHNNVEMARAAAEALMKLQ 616

Query: 655 PQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
           P+ ++ Y LL NM+A+ GRWD+  ++R  ME +  QK  G S ++
Sbjct: 617 PESSAPYVLLHNMYADVGRWDDAAEMRTMMEKNNVQKDAGYSRVD 661



 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 193/639 (30%), Positives = 330/639 (51%), Gaps = 69/639 (10%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           ++ NKKI+ L ++GR+ EA ++F      NT+T+N MI+AY K   +  AR+LFE+MP R
Sbjct: 58  YSLNKKISYLIRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNR 117

Query: 76  NLVSWNSMIAGYLH--NDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDL 133
           ++VSWN M++GY+      V+ AR +FD+M   D  SW  M++ Y + G ++KA ELF+ 
Sbjct: 118 DIVSWNLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGMMDKAEELFNE 177

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
           +P + +   WNAMV+GY   G+  +A +    MP ++  S  +++SG  +N ++  A + 
Sbjct: 178 MPER-NVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALISGLIQNDKLVEAERI 236

Query: 194 F----EAMEERDVV-SWNLMLDGYVELDDLDSAWKFFQKIP--------EQNVVSWVTML 240
                  + + D+V ++N ++ GY +      A K F +IP         +NV+SW +M+
Sbjct: 237 LLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMI 296

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTT 300
             Y R G ++ AR LFD+M  R+  +WN MI+ YVQ   ++EA+ LF  MPE + +SW  
Sbjct: 297 MCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRMPEPDTLSWNM 356

Query: 301 MIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH----D 356
           MI G+  I  L  A  L  ++P K++ +  +MISGY +N+    A  IF ++       D
Sbjct: 357 MISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPD 416

Query: 357 VVCWNVMIKGYAQCGRMDEAINL-FRQMVNK----DIVTWNTMIAGYAQIRQMDDAVKIF 411
               + ++   A  G +D  +     Q+V K    D+   N+++  Y++   + +A  +F
Sbjct: 417 RHTLSSILSACA--GLVDLVLGTQIHQLVTKAFIADLPINNSLVTMYSRCGAIVEARMVF 474

Query: 412 EEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAAL 471
           +EM  +R+ +SWNA+I G+  + F  +AL++F LM Q   +  + T    L+ACAH   +
Sbjct: 475 DEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLI 534

Query: 472 QLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGY 531
           + GR+                 NS++  +    ++++   L      VD+I         
Sbjct: 535 EEGRREF---------------NSMVNTHGIKPQVEHYAAL------VDII--------- 564

Query: 532 AINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE-VYAIEP 590
             +G   EA+ L   M  E   PD   +  +L AC     V   +++     E +  ++P
Sbjct: 565 GRHGQLEEAMSLINSMPCE---PDKAVWGALLGACK----VHNNVEMARAAAEALMKLQP 617

Query: 591 LVE-HYACMIDLLSRAGRLDEAFEMVKGMK---IKPNAG 625
                Y  + ++ +  GR D+A EM   M+   ++ +AG
Sbjct: 618 ESSAPYVLLHNMYADVGRWDDAAEMRTMMEKNNVQKDAG 656



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 122/422 (28%), Positives = 209/422 (49%), Gaps = 38/422 (9%)

Query: 11  KGSYVFNQNKKITQLGKSGRVEEAIKIFSQM--------SQKNTVTYNSMISAYAKNGRV 62
           KG  V   N  I   G+ G   EA K+F ++        S++N +++NSMI  Y + G +
Sbjct: 246 KGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDI 305

Query: 63  NDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKG 122
             AR+LF++M +R+  SWN+MI+GY+    +KEA  LF +M  PD  SW +MI+ ++  G
Sbjct: 306 VSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRMPEPDTLSWNMMISGFSEIG 365

Query: 123 ELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------PSKNIVSWNS 176
            L+ A +LF  +P K     WN+M++GY K  +Y  A  +   M      P ++ +S  S
Sbjct: 366 SLKLAHDLFKRIPEK-SLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLS--S 422

Query: 177 MLSGYTKNGEMHLASKFFEAMEE---RDVVSWNLMLDGYVELDDLDSAWKFFQKIP-EQN 232
           +LS      ++ L ++  + + +    D+   N ++  Y     +  A   F ++  +++
Sbjct: 423 ILSACAGLVDLVLGTQIHQLVTKAFIADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRD 482

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFI 288
           V+SW  M+ GYA +G   EA +LFD M   NV    + + +++ A    G IEE  R F 
Sbjct: 483 VISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEGRREFN 542

Query: 289 EMPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ---NK 340
            M   + +      +  ++D   R  +L+EA  L++ MP +   A    + G  +   N 
Sbjct: 543 SMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPCEPDKAVWGALLGACKVHNNV 602

Query: 341 RMDE-ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYA 399
            M   A +   K+       + ++   YA  GR D+A  + R M+ K+ V  +   AGY+
Sbjct: 603 EMARAAAEALMKLQPESSAPYVLLHNMYADVGRWDDAAEM-RTMMEKNNVQKD---AGYS 658

Query: 400 QI 401
           ++
Sbjct: 659 RV 660


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 234/599 (39%), Positives = 354/599 (59%), Gaps = 33/599 (5%)

Query: 115 ITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSW 174
           I+  +R G++ +AR+ FD L  K     WN++V+GY   G   EA++L D M  +N+VSW
Sbjct: 24  ISRLSRIGKINEARKFFDSLQFKA-IGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSW 82

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
           N ++SGY KN  +  A   FE M ER+VVSW  M+ GY++   +  A   F ++PE+N V
Sbjct: 83  NGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEV 142

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
           SW  M  G   +GR+ +AR+L+D MP+++VVA   MI    + G+++EA  +F EM ERN
Sbjct: 143 SWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERN 202

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
            V+WTTMI GY +  ++D AR+L + MP K   + T+M+ GY  + R+++A + F+ +  
Sbjct: 203 VVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPM 262

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
             V+  N MI G+ + G + +A  +F  M ++D  TW  MI  Y             E  
Sbjct: 263 KPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAY-------------ERK 309

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
           G                   F L+AL +F  M ++G +    +L   LS CA LA+LQ G
Sbjct: 310 G-------------------FELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYG 350

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
           RQ+H   ++  + +D++V + L+TMY KCG +  A+L+F      D+I WNS+I+GYA +
Sbjct: 351 RQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASH 410

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEH 594
           G   EA+K+F EM   G  P+ VT I +L+ACS+ G ++ GL++FE M   + + P VEH
Sbjct: 411 GLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEH 470

Query: 595 YACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE 654
           Y+C +D+L RAG++D+A E+++ M IKP+A +WG LLGAC+ H  + L  +A +KL E E
Sbjct: 471 YSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENE 530

Query: 655 PQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPK 713
           P     Y LLS+++A   +W +V  VR +M  +   K PGCSWIEV  ++H F  G  K
Sbjct: 531 PDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIK 589



 Score =  258 bits (659), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 167/548 (30%), Positives = 282/548 (51%), Gaps = 57/548 (10%)

Query: 17  NQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRN 76
           N + +I++L + G++ EA K F  +  K   ++NS++S Y  NG   +AR+LF++M +RN
Sbjct: 19  NCSFEISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERN 78

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN 136
           +VSWN +++GY+ N  + EAR +F+ M   ++ SW  M+  Y ++G + +A  LF  +P 
Sbjct: 79  VVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPE 138

Query: 137 KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEA 196
           + + + W  M  G    G  ++A+KL D MP K++V+  +M+ G  + G +  A   F+ 
Sbjct: 139 RNEVS-WTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDE 197

Query: 197 MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF 256
           M ER+VV+W  M+ GY + + +D A K F+ +PE+  VSW +ML GY  +GR+ +A   F
Sbjct: 198 MRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFF 257

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
           + MP++ V+A NAMI  + + G+I +A R+F  M +R+  +W  MI  Y R     EA  
Sbjct: 258 EVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALD 317

Query: 317 LLDQMPYKNIAAQ-TAMIS--------GYVQNKRMDEANQI---FDKIGTHDVVCWNVMI 364
           L  QM  + +     ++IS          +Q  R   A+ +   FD     DV   +V++
Sbjct: 318 LFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDD----DVYVASVLM 373

Query: 365 KGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
             Y +CG + +A  +F +  +KDI+ WN++I+GYA     ++A+KIF EM          
Sbjct: 374 TMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPS-------- 425

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
              SG + N+                      TL   L+AC++   L+ G +I   +++S
Sbjct: 426 ---SGTMPNKV---------------------TLIAILTACSYAGKLEEGLEIFE-SMES 460

Query: 485 GYVNDLFVGN--SLITMYAKCGRIQNA-ELLFKDADPVDVISWNSLIAGYAINGN----A 537
            +     V +    + M  + G++  A EL+       D   W +L+     +       
Sbjct: 461 KFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAE 520

Query: 538 TEAIKLFE 545
             A KLFE
Sbjct: 521 VAAKKLFE 528



 Score =  192 bits (488), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 124/446 (27%), Positives = 233/446 (52%), Gaps = 21/446 (4%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  ++   K+  + EA  +F  M ++N V++ +M+  Y + G V +A  LF +MP+
Sbjct: 79  VVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPE 138

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN VSW  M  G + + ++ +AR+L+D M   D+ +   MI    R+G +++AR +FD +
Sbjct: 139 RNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEM 198

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
             + +   W  M+ GY +    + A+KL + MP K  VSW SML GYT +G +  A +FF
Sbjct: 199 RER-NVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFF 257

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
           E M  + V++ N M+ G+ E+ ++  A + F  + +++  +W  M+  Y R G  LEA  
Sbjct: 258 EVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALD 317

Query: 255 LFDQMPIRNV-VAWNAMIA--------AYVQRGQIEEAARLFIEMPERNPVSWTTMIDGY 305
           LF QM  + V  ++ ++I+        A +Q G+   A  +  +  +   V+ + ++  Y
Sbjct: 318 LFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVA-SVLMTMY 376

Query: 306 VRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV----VCWN 361
           V+  +L +A+ + D+   K+I    ++ISGY  +   +EA +IF ++ +       V   
Sbjct: 377 VKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLI 436

Query: 362 VMIKGYAQCGRMDEAINLFRQMVNKDIVT-----WNTMIAGYAQIRQMDDAVKIFEEMGK 416
            ++   +  G+++E + +F  M +K  VT     ++  +    +  Q+D A+++ E M  
Sbjct: 437 AILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTI 496

Query: 417 RRNTVSWNALISGFLQNEFHLDALKI 442
           + +   W AL+ G  +    LD  ++
Sbjct: 497 KPDATVWGALL-GACKTHSRLDLAEV 521


>gi|255560453|ref|XP_002521241.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539509|gb|EEF41097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 662

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 242/612 (39%), Positives = 363/612 (59%), Gaps = 60/612 (9%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N  ++ + + G  NEA+ L D +  +N V+WNSM+SGY K GEM  A K F+ M ERDVV
Sbjct: 51  NKKISHFTRTGRINEARALFDKLERRNTVTWNSMISGYVKRGEMTKARKLFDEMPERDVV 110

Query: 204 SWNLMLDGYVELDD---LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
           SWNL++ GYV       ++     F K+PE+  VSW TM+SGYA+NGRM EA  LF+ MP
Sbjct: 111 SWNLIISGYVSCRGKRFIEEGRNLFDKMPERCCVSWNTMISGYAKNGRMDEALGLFNTMP 170

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
            +N V+WNAM++ ++Q G +  A   F  MPER+  S + ++ G ++ ++LD+A R+L  
Sbjct: 171 EKNSVSWNAMVSGFLQNGDVVRAIEFFKRMPERDVTSLSALVSGLIQNSELDQAERIL-- 228

Query: 321 MPYKN--------IAAQTAMISGYVQNKRMDEANQIFDKIGTH----------------- 355
           + Y N        + A   +I+GY Q  R+DEA  +FDKI  +                 
Sbjct: 229 LDYGNNGGSKEYLVHAYNTLIAGYGQRGRVDEAQNLFDKIPFYNDQGKGRTGRFERNVVS 288

Query: 356 ---------------------------DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
                                      D   WN MI GY     M+EA NLF +M + D 
Sbjct: 289 WNTMIMCYVKAGDVISARKLFDQMPDRDSFSWNTMISGYVHVLDMEEASNLFHKMPSPDT 348

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
           ++WN MI+GYAQ   ++ A   FE M  ++N VSWN++I+G+ +N  ++ A+ +F+ M  
Sbjct: 349 LSWNLMISGYAQSGSLELAHDFFERM-PQKNLVSWNSVIAGYEKNGDYIGAINLFIQMQV 407

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
           EG+K+D  TL+  LS  + +  LQLG QIH L  K+  + D+ + N+LITMY++CG I  
Sbjct: 408 EGEKSDRHTLSSLLSVSSGIVDLQLGMQIHQLVSKT-VIPDVPLNNALITMYSRCGAIFE 466

Query: 509 AELLFKDAD-PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
           A  +F +     +VISWN++I GYA +G ATEA++LF+ M    V P  +TFI VL+AC+
Sbjct: 467 ARTIFYEMKLQKEVISWNAMIGGYASHGYATEALELFKLMRSFKVQPTYITFISVLNACA 526

Query: 568 HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIW 627
           H GLV+ G ++FE M   Y +EP VEH+A ++D++ R G+L+EA +++  M I+P+  +W
Sbjct: 527 HAGLVEEGRRIFESMVSDYGVEPRVEHFASLVDIVGRQGQLEEALDLINSMTIEPDKAVW 586

Query: 628 GTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGS 687
           G LLGA R+H N+++ R+A E L +LEP  +  Y LL NM+ + G+WD   ++R  ME +
Sbjct: 587 GALLGASRVHNNVEMARVAAEALMKLEPDSSVPYILLYNMYVDVGQWDNAAEIRSMMERN 646

Query: 688 GAQKQPGCSWIE 699
             +K+   SW++
Sbjct: 647 NIKKEAAISWVD 658



 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 193/607 (31%), Positives = 319/607 (52%), Gaps = 66/607 (10%)

Query: 39  SQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARE 98
           + +   N  + N  IS + + GR+N+AR LF+++ +RN V+WNSMI+GY+   ++ +AR+
Sbjct: 40  TSVEDSNLYSSNKKISHFTRTGRINEARALFDKLERRNTVTWNSMISGYVKRGEMTKARK 99

Query: 99  LFDKMFRPDLFSWALMITCYTR---KGELEKARELFDLLPNKEDTACWNAMVAGYAKIGN 155
           LFD+M   D+ SW L+I+ Y     K  +E+ R LFD +P +     WN M++GYAK G 
Sbjct: 100 LFDEMPERDVVSWNLIISGYVSCRGKRFIEEGRNLFDKMPER-CCVSWNTMISGYAKNGR 158

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
            +EA  L + MP KN VSWN+M+SG+ +NG++  A +FF+ M ERDV S + ++ G ++ 
Sbjct: 159 MDEALGLFNTMPEKNSVSWNAMVSGFLQNGDVVRAIEFFKRMPERDVTSLSALVSGLIQN 218

Query: 216 DDLDSAWKFFQKI------PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI-------- 261
            +LD A +            E  V ++ T+++GY + GR+ EA+ LFD++P         
Sbjct: 219 SELDQAERILLDYGNNGGSKEYLVHAYNTLIAGYGQRGRVDEAQNLFDKIPFYNDQGKGR 278

Query: 262 -----RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
                RNVV+WN MI  YV+ G +  A +LF +MP+R+  SW TMI GYV +  ++EA  
Sbjct: 279 TGRFERNVVSWNTMIMCYVKAGDVISARKLFDQMPDRDSFSWNTMISGYVHVLDMEEASN 338

Query: 317 LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
           L  +MP  +  +   MISGY Q+  ++ A+  F+++   ++V WN +I GY + G    A
Sbjct: 339 LFHKMPSPDTLSWNLMISGYAQSGSLELAHDFFERMPQKNLVSWNSVIAGYEKNGDYIGA 398

Query: 377 INLFRQM--------------------------------------VNKDIVTWNTMIAGY 398
           INLF QM                                      V  D+   N +I  Y
Sbjct: 399 INLFIQMQVEGEKSDRHTLSSLLSVSSGIVDLQLGMQIHQLVSKTVIPDVPLNNALITMY 458

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           ++   + +A  IF EM  ++  +SWNA+I G+  + +  +AL++F LM     +  + T 
Sbjct: 459 SRCGAIFEARTIFYEMKLQKEVISWNAMIGGYASHGYATEALELFKLMRSFKVQPTYITF 518

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN--SLITMYAKCGRIQNA-ELLFKD 515
              L+ACAH   ++ GR+I   ++ S Y  +  V +  SL+ +  + G+++ A +L+   
Sbjct: 519 ISVLNACAHAGLVEEGRRIFE-SMVSDYGVEPRVEHFASLVDIVGRQGQLEEALDLINSM 577

Query: 516 ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
               D   W +L+    ++ N  E  ++  E +M+      V +I + +    VG  D  
Sbjct: 578 TIEPDKAVWGALLGASRVHNN-VEMARVAAEALMKLEPDSSVPYILLYNMYVDVGQWDNA 636

Query: 576 LKLFECM 582
            ++   M
Sbjct: 637 AEIRSMM 643



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 107/358 (29%), Positives = 173/358 (48%), Gaps = 67/358 (18%)

Query: 9   GNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMS-------------QKNTVTYNSMISA 55
           G+K   V   N  I   G+ GRV+EA  +F ++              ++N V++N+MI  
Sbjct: 236 GSKEYLVHAYNTLIAGYGQRGRVDEAQNLFDKIPFYNDQGKGRTGRFERNVVSWNTMIMC 295

Query: 56  YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMI 115
           Y K G V  ARKLF+QMP R+  SWN+MI+GY+H   ++EA  LF KM  PD  SW LMI
Sbjct: 296 YVKAGDVISARKLFDQMPDRDSFSWNTMISGYVHVLDMEEASNLFHKMPSPDTLSWNLMI 355

Query: 116 TCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP-------- 167
           + Y + G LE A + F+ +P K +   WN+++AGY K G+Y  A  L   M         
Sbjct: 356 SGYAQSGSLELAHDFFERMPQK-NLVSWNSVIAGYEKNGDYIGAINLFIQMQVEGEKSDR 414

Query: 168 --------------------------SKNIVS----WNSMLSGYTKNGEMHLASKFFEAM 197
                                     SK ++      N++++ Y++ G +  A   F  M
Sbjct: 415 HTLSSLLSVSSGIVDLQLGMQIHQLVSKTVIPDVPLNNALITMYSRCGAIFEARTIFYEM 474

Query: 198 E-ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEA 252
           + +++V+SWN M+ GY        A + F+ +    V    ++++++L+  A  G + E 
Sbjct: 475 KLQKEVISWNAMIGGYASHGYATEALELFKLMRSFKVQPTYITFISVLNACAHAGLVEEG 534

Query: 253 RRLFDQM-------PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMI 302
           RR+F+ M       P   V  + +++    ++GQ+EEA  L   M  E +   W  ++
Sbjct: 535 RRIFESMVSDYGVEP--RVEHFASLVDIVGRQGQLEEALDLINSMTIEPDKAVWGALL 590


>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Glycine max]
          Length = 581

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 225/562 (40%), Positives = 352/562 (62%), Gaps = 5/562 (0%)

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI-PEQNV 233
           N  +S   + GE+  A K FE M ERD+  W  M+ GY++   +  A K F +   ++NV
Sbjct: 5   NLFISRLCREGEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRWDAKKNV 64

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           V+W  M++GY +  ++ EA RLF +MP+RNVV+WN M+  Y + G  ++A  LF  MPER
Sbjct: 65  VTWTAMVNGYIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRMPER 124

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
           N VSW T+I   V+  ++++A+RL DQM  +++ + T M++G  +N R+++A  +FD++ 
Sbjct: 125 NVVSWNTIITALVQCGRIEDAQRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMP 184

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEE 413
             +VV WN MI GYAQ  R+DEA+ LF++M  +D+ +WNTMI G+ Q  +++ A K+F E
Sbjct: 185 VRNVVSWNAMITGYAQNRRLDEALQLFQRMPERDMPSWNTMITGFIQNGELNRAEKLFGE 244

Query: 414 MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK-KADHSTLACALSACAHLAALQ 472
           M + +N ++W A+++G++Q+    +AL++F+ M    + K +  T    L AC+ LA L 
Sbjct: 245 M-QEKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACSDLAGLT 303

Query: 473 LGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAG 530
            G+QIH +  K+ + +   V ++LI MY+KCG +  A  +F D      D+ISWN +IA 
Sbjct: 304 EGQQIHQMISKTVFQDSTCVVSALINMYSKCGELHTARKMFDDGLLSQRDLISWNGMIAA 363

Query: 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP 590
           YA +G   EAI LF EM   GV  + VTF+G+L+ACSH GLV+ G K F+ + +  +I+ 
Sbjct: 364 YAHHGYGKEAINLFNEMQELGVCANDVTFVGLLTACSHTGLVEEGFKYFDEILKNRSIQL 423

Query: 591 LVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL 650
             +HYAC++DL  RAGRL EA  +++G+  +    +WG LL  C +H N  +G++  EK+
Sbjct: 424 REDHYACLVDLCGRAGRLKEASNIIEGLGEEVPLTVWGALLAGCNVHGNADIGKLVAEKI 483

Query: 651 SELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSG 710
            ++EPQ    Y+LLSNM+A  G+W E   VR+ M+  G +KQPGCSWIEV N +  F+ G
Sbjct: 484 LKIEPQNAGTYSLLSNMYASVGKWKEAANVRMRMKDMGLKKQPGCSWIEVGNTVQVFVVG 543

Query: 711 DPKQCRTAEICNTLKTLAAQIR 732
           D    +   + + L  L  +++
Sbjct: 544 DKPHSQYEPLGHLLHDLHTKMK 565



 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 162/499 (32%), Positives = 283/499 (56%), Gaps = 20/499 (4%)

Query: 81  NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
           N  I+      ++  AR++F++M   D+  W  MIT Y + G + +AR+LFD    K++ 
Sbjct: 5   NLFISRLCREGEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRWDAKKNV 64

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER 200
             W AMV GY K     EA++L   MP +N+VSWN+M+ GY +NG    A   F  M ER
Sbjct: 65  VTWTAMVNGYIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRMPER 124

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
           +VVSWN ++   V+   ++ A + F ++ +++VVSW TM++G A+NGR+ +AR LFDQMP
Sbjct: 125 NVVSWNTIITALVQCGRIEDAQRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMP 184

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
           +RNVV+WNAMI  Y Q  +++EA +LF  MPER+  SW TMI G+++  +L+ A +L  +
Sbjct: 185 VRNVVSWNAMITGYAQNRRLDEALQLFQRMPERDMPSWNTMITGFIQNGELNRAEKLFGE 244

Query: 321 MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWN-----VMIKGYAQCGRMDE 375
           M  KN+   TAM++GYVQ+   +EA ++F K+   + +  N      ++   +    + E
Sbjct: 245 MQEKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACSDLAGLTE 304

Query: 376 AINLFRQMVNKDIVTWNT-----MIAGYAQIRQMDDAVKIFEE-MGKRRNTVSWNALISG 429
              +  QM++K +   +T     +I  Y++  ++  A K+F++ +  +R+ +SWN +I+ 
Sbjct: 305 GQQI-HQMISKTVFQDSTCVVSALINMYSKCGELHTARKMFDDGLLSQRDLISWNGMIAA 363

Query: 430 FLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN- 488
           +  + +  +A+ +F  M + G  A+  T    L+AC+H   ++ G +     +K+  +  
Sbjct: 364 YAHHGYGKEAINLFNEMQELGVCANDVTFVGLLTACSHTGLVEEGFKYFDEILKNRSIQL 423

Query: 489 --DLFVGNSLITMYAKCGRIQNAELLFKD-ADPVDVISWNSLIAGYAINGNATEAIKLFE 545
             D +    L+ +  + GR++ A  + +   + V +  W +L+AG  ++GNA +  KL  
Sbjct: 424 REDHYA--CLVDLCGRAGRLKEASNIIEGLGEEVPLTVWGALLAGCNVHGNA-DIGKLVA 480

Query: 546 EMVMEGVAPDPVTFIGVLS 564
           E +++ + P       +LS
Sbjct: 481 EKILK-IEPQNAGTYSLLS 498



 Score =  254 bits (650), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 139/418 (33%), Positives = 242/418 (57%), Gaps = 19/418 (4%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM-PQRNL 77
           N  I++L + G ++ A K+F +M +++   + +MI+ Y K G + +ARKLF++   ++N+
Sbjct: 5   NLFISRLCREGEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRWDAKKNV 64

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
           V+W +M+ GY+  ++VKEA  LF +M   ++ SW  M+  Y R G  ++A +LF  +P +
Sbjct: 65  VTWTAMVNGYIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRMPER 124

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            +   WN ++    + G   +A++L D M  +++VSW +M++G  KNG +  A   F+ M
Sbjct: 125 -NVVSWNTIITALVQCGRIEDAQRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQM 183

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFD 257
             R+VVSWN M+ GY +   LD A + FQ++PE+++ SW TM++G+ +NG +  A +LF 
Sbjct: 184 PVRNVVSWNAMITGYAQNRRLDEALQLFQRMPERDMPSWNTMITGFIQNGELNRAEKLFG 243

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-----SWTTMIDGYVRIAKLD 312
           +M  +NV+ W AM+  YVQ G  EEA R+FI+M   N +     ++ T++     +A L 
Sbjct: 244 EMQEKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACSDLAGLT 303

Query: 313 EARRLLDQMPYKNI-----AAQTAMISGYVQNKRMDEANQIFDK--IGTHDVVCWNVMIK 365
           E ++ + QM  K +        +A+I+ Y +   +  A ++FD   +   D++ WN MI 
Sbjct: 304 EGQQ-IHQMISKTVFQDSTCVVSALINMYSKCGELHTARKMFDDGLLSQRDLISWNGMIA 362

Query: 366 GYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRN 419
            YA  G   EAINLF +M    V  + VT+  ++   +    +++  K F+E+ K R+
Sbjct: 363 AYAHHGYGKEAINLFNEMQELGVCANDVTFVGLLTACSHTGLVEEGFKYFDEILKNRS 420



 Score =  202 bits (513), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 119/401 (29%), Positives = 208/401 (51%), Gaps = 55/401 (13%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K  +V+EA ++F +M  +N V++N+M+  YA+NG    A  LF +MP+RN+VSWN++I  
Sbjct: 76  KFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRMPERNVVSWNTIITA 135

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
            +   ++++A+ LFD+M   D+ SW  M+    + G +E AR LFD +P + +   WNAM
Sbjct: 136 LVQCGRIEDAQRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMPVR-NVVSWNAM 194

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN 206
           + GYA+    +EA +L   MP +++ SWN+M++G+ +NGE++ A K F  M+E++V++W 
Sbjct: 195 ITGYAQNRRLDEALQLFQRMPERDMPSWNTMITGFIQNGELNRAEKLFGEMQEKNVITWT 254

Query: 207 LMLDGYVELDDLDSAWKFFQKI-----PEQNVVSWVTMLSG------------------- 242
            M+ GYV+    + A + F K+      + N  ++VT+L                     
Sbjct: 255 AMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACSDLAGLTEGQQIHQMISK 314

Query: 243 ----------------YARNGRMLEARRLFDQ--MPIRNVVAWNAMIAAYVQRGQIEEAA 284
                           Y++ G +  AR++FD   +  R++++WN MIAAY   G  +EA 
Sbjct: 315 TVFQDSTCVVSALINMYSKCGELHTARKMFDDGLLSQRDLISWNGMIAAYAHHGYGKEAI 374

Query: 285 RLFIEMPE----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ------TAMIS 334
            LF EM E     N V++  ++        ++E  +  D++  KN + Q        ++ 
Sbjct: 375 NLFNEMQELGVCANDVTFVGLLTACSHTGLVEEGFKYFDEI-LKNRSIQLREDHYACLVD 433

Query: 335 GYVQNKRMDEANQIFDKIGTH-DVVCWNVMIKGYAQCGRMD 374
              +  R+ EA+ I + +G    +  W  ++ G    G  D
Sbjct: 434 LCGRAGRLKEASNIIEGLGEEVPLTVWGALLAGCNVHGNAD 474



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/397 (29%), Positives = 208/397 (52%), Gaps = 33/397 (8%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  IT L + GR+E+A ++F QM  ++ V++ +M++  AKNGRV DAR LF+QMP 
Sbjct: 126 VVSWNTIITALVQCGRIEDAQRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMPV 185

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN+VSWN+MI GY  N ++ EA +LF +M   D+ SW  MIT + + GEL +A +LF  +
Sbjct: 186 RNVVSWNAMITGYAQNRRLDEALQLFQRMPERDMPSWNTMITGFIQNGELNRAEKLFGEM 245

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN-----------SMLSGYTK 183
             K +   W AM+ GY + G   EA ++   M + N +  N           S L+G T+
Sbjct: 246 QEK-NVITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACSDLAGLTE 304

Query: 184 NGEMH--LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK--IPEQNVVSWVTM 239
             ++H  ++   F+  +   VVS   +++ Y +  +L +A K F    + +++++SW  M
Sbjct: 305 GQQIHQMISKTVFQ--DSTCVVS--ALINMYSKCGELHTARKMFDDGLLSQRDLISWNGM 360

Query: 240 LSGYARNGRMLEARRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
           ++ YA +G   EA  LF++M       N V +  ++ A    G +EE  + F E+ +   
Sbjct: 361 IAAYAHHGYGKEAINLFNEMQELGVCANDVTFVGLLTACSHTGLVEEGFKYFDEILKNRS 420

Query: 296 VS-----WTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIF 349
           +      +  ++D   R  +L EA  +++ +  +  +    A+++G   +   D    + 
Sbjct: 421 IQLREDHYACLVDLCGRAGRLKEASNIIEGLGEEVPLTVWGALLAGCNVHGNADIGKLVA 480

Query: 350 D---KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
           +   KI   +   ++++   YA  G+  EA N+  +M
Sbjct: 481 EKILKIEPQNAGTYSLLSNMYASVGKWKEAANVRMRM 517


>gi|326526103|dbj|BAJ93228.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 623

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/581 (40%), Positives = 348/581 (59%), Gaps = 5/581 (0%)

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE 214
           +Y+ A  +       ++   N  ++     G +  A + F+   +RDVVSW  M+  Y  
Sbjct: 23  SYHGAAAVFSTDAFSHVQDPNRRIAELAAAGRVPDARRLFDRTPDRDVVSWTAMVAAYAR 82

Query: 215 LDDLDSAWKFFQKIPE--QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
              L  A     + P+  +NVV+W  +LSGYAR  R+ EAR LFD+MP RNVV+WN M+ 
Sbjct: 83  QGQLHEASALLHR-PDARRNVVTWTALLSGYARARRVDEARALFDRMPERNVVSWNTMLE 141

Query: 273 AYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAM 332
           AY   G++  A  LF  MP R+  SW  ++   VR   +DEARRL ++MP +N+ + T M
Sbjct: 142 AYASAGRMGAACALFDGMPVRDAGSWNILLAALVRSGTMDEARRLFERMPERNVMSWTTM 201

Query: 333 ISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWN 392
           ISG  ++   DEA  +FD +   +VV WN MI GYA+  R+DEA++LF  M  +D+ +WN
Sbjct: 202 ISGLARSGSADEARALFDGMPERNVVSWNAMISGYARNLRIDEALDLFMNMPERDVASWN 261

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
            MI G+ Q + +  A ++F+EM KR N VSW  +++G LQ      AL++F  M  +G +
Sbjct: 262 IMITGFIQNKDLKKAQELFDEMPKR-NVVSWTTMMNGCLQGNESEMALQVFNGMLVDGIR 320

Query: 453 ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512
            +  T   A+ A ++LA L  G+Q+H +  K+ +  D F+ +SL+ +YAKCG I+ A  +
Sbjct: 321 PNQVTFLGAVDAGSNLAGLSEGQQVHQMICKTPFQFDNFIESSLMKLYAKCGEIRLARKV 380

Query: 513 FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
           F  +   DVISWN +IA YA +G   EAI L+E+M      P+ VT++G+LSACSH GLV
Sbjct: 381 FDLSGEKDVISWNGMIAAYAHHGAGVEAIALYEKMQENRYKPNDVTYVGLLSACSHSGLV 440

Query: 573 DGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAG-IWGTLL 631
           D GL++FE M +  +I    EHY+C+IDL SRAGRLD+A  ++ G+K+KP +  +W  LL
Sbjct: 441 DEGLRIFEYMAKDKSIAVRDEHYSCLIDLCSRAGRLDDAKRLINGLKLKPTSSTVWSALL 500

Query: 632 GACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQK 691
           G C  H N  +G +A   L E EP     Y LLSN++A AG+W E  K+R  M   G +K
Sbjct: 501 GGCNAHGNESIGDLAARNLLEAEPDNAGTYTLLSNIYASAGKWKEAAKIRSEMNDRGLKK 560

Query: 692 QPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           QPGCSWIE+ N++H F++ D     +  I + L+ +   +R
Sbjct: 561 QPGCSWIELANKVHVFVARDKSHSESELIYSLLQDIHHMMR 601



 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 156/470 (33%), Positives = 251/470 (53%), Gaps = 14/470 (2%)

Query: 81  NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
           N  IA      +V +AR LFD+    D+ SW  M+  Y R+G+L +A  L      + + 
Sbjct: 43  NRRIAELAAAGRVPDARRLFDRTPDRDVVSWTAMVAAYARQGQLHEASALLHRPDARRNV 102

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER 200
             W A+++GYA+    +EA+ L D MP +N+VSWN+ML  Y   G M  A   F+ M  R
Sbjct: 103 VTWTALLSGYARARRVDEARALFDRMPERNVVSWNTMLEAYASAGRMGAACALFDGMPVR 162

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
           D  SWN++L   V    +D A + F+++PE+NV+SW TM+SG AR+G   EAR LFD MP
Sbjct: 163 DAGSWNILLAALVRSGTMDEARRLFERMPERNVMSWTTMISGLARSGSADEARALFDGMP 222

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
            RNVV+WNAMI+ Y +  +I+EA  LF+ MPER+  SW  MI G+++   L +A+ L D+
Sbjct: 223 ERNVVSWNAMISGYARNLRIDEALDLFMNMPERDVASWNIMITGFIQNKDLKKAQELFDE 282

Query: 321 MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN-- 378
           MP +N+ + T M++G +Q    + A Q+F+ +    +    V   G    G     ++  
Sbjct: 283 MPKRNVVSWTTMMNGCLQGNESEMALQVFNGMLVDGIRPNQVTFLGAVDAGSNLAGLSEG 342

Query: 379 -LFRQMVNKDIVTWNTMIAG-----YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
               QM+ K    ++  I       YA+  ++  A K+F+  G+ ++ +SWN +I+ +  
Sbjct: 343 QQVHQMICKTPFQFDNFIESSLMKLYAKCGEIRLARKVFDLSGE-KDVISWNGMIAAYAH 401

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI--KSGYVNDL 490
           +   ++A+ ++  M +   K +  T    LSAC+H   +  G +I       KS  V D 
Sbjct: 402 HGAGVEAIALYEKMQENRYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMAKDKSIAVRDE 461

Query: 491 FVGNSLITMYAKCGRIQNAELLFK--DADPVDVISWNSLIAGYAINGNAT 538
              + LI + ++ GR+ +A+ L       P     W++L+ G   +GN +
Sbjct: 462 HY-SCLIDLCSRAGRLDDAKRLINGLKLKPTSSTVWSALLGGCNAHGNES 510



 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 175/542 (32%), Positives = 271/542 (50%), Gaps = 25/542 (4%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKV 93
           A  +FS  +  +    N  I+  A  GRV DAR+LF++ P R++VSW +M+A Y    ++
Sbjct: 27  AAAVFSTDAFSHVQDPNRRIAELAAAGRVPDARRLFDRTPDRDVVSWTAMVAAYARQGQL 86

Query: 94  KEARELFDKMFRPD----LFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAG 149
            EA  L   + RPD    + +W  +++ Y R   +++AR LFD +P + +   WN M+  
Sbjct: 87  HEASAL---LHRPDARRNVVTWTALLSGYARARRVDEARALFDRMPER-NVVSWNTMLEA 142

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML 209
           YA  G    A  L D MP ++  SWN +L+   ++G M  A + FE M ER+V+SW  M+
Sbjct: 143 YASAGRMGAACALFDGMPVRDAGSWNILLAALVRSGTMDEARRLFERMPERNVMSWTTMI 202

Query: 210 DGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNA 269
            G       D A   F  +PE+NVVSW  M+SGYARN R+ EA  LF  MP R+V +WN 
Sbjct: 203 SGLARSGSADEARALFDGMPERNVVSWNAMISGYARNLRIDEALDLFMNMPERDVASWNI 262

Query: 270 MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
           MI  ++Q   +++A  LF EMP+RN VSWTTM++G ++  + + A ++ + M    I   
Sbjct: 263 MITGFIQNKDLKKAQELFDEMPKRNVVSWTTMMNGCLQGNESEMALQVFNGMLVDGIRPN 322

Query: 330 TAMISGYVQNKR----MDEANQIFDKIGT----HDVVCWNVMIKGYAQCGRMDEAINLFR 381
                G V        + E  Q+   I       D    + ++K YA+CG +  A  +F 
Sbjct: 323 QVTFLGAVDAGSNLAGLSEGQQVHQMICKTPFQFDNFIESSLMKLYAKCGEIRLARKVFD 382

Query: 382 QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRR---NTVSWNALISGFLQNEFHLD 438
               KD+++WN MIA YA      +A+ ++E+M + R   N V++  L+S    +    +
Sbjct: 383 LSGEKDVISWNGMIAAYAHHGAGVEAIALYEKMQENRYKPNDVTYVGLLSACSHSGLVDE 442

Query: 439 ALKIFVLMTQEGKKA-DHSTLACALSACAHLAAL-QLGRQIHHLAIK--SGYVNDLFVGN 494
            L+IF  M ++   A      +C +  C+    L    R I+ L +K  S  V    +G 
Sbjct: 443 GLRIFEYMAKDKSIAVRDEHYSCLIDLCSRAGRLDDAKRLINGLKLKPTSSTVWSALLGG 502

Query: 495 SLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP 554
                    G +    LL  +A+P +  ++  L   YA  G   EA K+  EM   G+  
Sbjct: 503 CNAHGNESIGDLAARNLL--EAEPDNAGTYTLLSNIYASAGKWKEAAKIRSEMNDRGLKK 560

Query: 555 DP 556
            P
Sbjct: 561 QP 562



 Score =  255 bits (652), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 133/420 (31%), Positives = 244/420 (58%), Gaps = 14/420 (3%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S+V + N++I +L  +GRV +A ++F +   ++ V++ +M++AYA+ G++++A  L  + 
Sbjct: 37  SHVQDPNRRIAELAAAGRVPDARRLFDRTPDRDVVSWTAMVAAYARQGQLHEASALLHRP 96

Query: 73  -PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
             +RN+V+W ++++GY    +V EAR LFD+M   ++ SW  M+  Y   G +  A  LF
Sbjct: 97  DARRNVVTWTALLSGYARARRVDEARALFDRMPERNVVSWNTMLEAYASAGRMGAACALF 156

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
           D +P + D   WN ++A   + G  +EA++L + MP +N++SW +M+SG  ++G    A 
Sbjct: 157 DGMPVR-DAGSWNILLAALVRSGTMDEARRLFERMPERNVMSWTTMISGLARSGSADEAR 215

Query: 192 KFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLE 251
             F+ M ER+VVSWN M+ GY     +D A   F  +PE++V SW  M++G+ +N  + +
Sbjct: 216 ALFDGMPERNVVSWNAMISGYARNLRIDEALDLFMNMPERDVASWNIMITGFIQNKDLKK 275

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF----IEMPERNPVSWTTMIDGYVR 307
           A+ LFD+MP RNVV+W  M+   +Q  + E A ++F    ++    N V++   +D    
Sbjct: 276 AQELFDEMPKRNVVSWTTMMNGCLQGNESEMALQVFNGMLVDGIRPNQVTFLGAVDAGSN 335

Query: 308 IAKLDEAR---RLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVM 363
           +A L E +   +++ + P++ +   +++++  Y +   +  A ++FD  G  DV+ WN M
Sbjct: 336 LAGLSEGQQVHQMICKTPFQFDNFIESSLMKLYAKCGEIRLARKVFDLSGEKDVISWNGM 395

Query: 364 IKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRN 419
           I  YA  G   EAI L+ +M       + VT+  +++  +    +D+ ++IFE M K ++
Sbjct: 396 IAAYAHHGAGVEAIALYEKMQENRYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMAKDKS 455



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 127/449 (28%), Positives = 223/449 (49%), Gaps = 54/449 (12%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           ++   ++ RV+EA  +F +M ++N V++N+M+ AYA  GR+  A  LF+ MP R+  SWN
Sbjct: 109 LSGYARARRVDEARALFDRMPERNVVSWNTMLEAYASAGRMGAACALFDGMPVRDAGSWN 168

Query: 82  SMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTA 141
            ++A  + +  + EAR LF++M   ++ SW  MI+   R G  ++AR LFD +P + +  
Sbjct: 169 ILLAALVRSGTMDEARRLFERMPERNVMSWTTMISGLARSGSADEARALFDGMPER-NVV 227

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
            WNAM++GYA+    +EA  L   MP +++ SWN M++G+ +N ++  A + F+ M +R+
Sbjct: 228 SWNAMISGYARNLRIDEALDLFMNMPERDVASWNIMITGFIQNKDLKKAQELFDEMPKRN 287

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKI------PEQ----NVVSWVTMLSG--------- 242
           VVSW  M++G ++ ++ + A + F  +      P Q      V   + L+G         
Sbjct: 288 VVSWTTMMNGCLQGNESEMALQVFNGMLVDGIRPNQVTFLGAVDAGSNLAGLSEGQQVHQ 347

Query: 243 --------------------YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEE 282
                               YA+ G +  AR++FD    ++V++WN MIAAY   G   E
Sbjct: 348 MICKTPFQFDNFIESSLMKLYAKCGEIRLARKVFDLSGEKDVISWNGMIAAYAHHGAGVE 407

Query: 283 AARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPY-KNIAAQ----TAMI 333
           A  L+ +M E     N V++  ++        +DE  R+ + M   K+IA +    + +I
Sbjct: 408 AIALYEKMQENRYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMAKDKSIAVRDEHYSCLI 467

Query: 334 SGYVQNKRMDEANQIFD--KIGTHDVVCWNVMIKGYAQCGRM---DEAINLFRQMVNKDI 388
               +  R+D+A ++ +  K+       W+ ++ G    G     D A     +    + 
Sbjct: 468 DLCSRAGRLDDAKRLINGLKLKPTSSTVWSALLGGCNAHGNESIGDLAARNLLEAEPDNA 527

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
            T+  +   YA   +  +A KI  EM  R
Sbjct: 528 GTYTLLSNIYASAGKWKEAAKIRSEMNDR 556



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 188/339 (55%), Gaps = 26/339 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +  L +SG ++EA ++F +M ++N +++ +MIS  A++G  ++AR LF+ MP+RN+V
Sbjct: 168 NILLAALVRSGTMDEARRLFERMPERNVMSWTTMISGLARSGSADEARALFDGMPERNVV 227

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           SWN+MI+GY  N ++ EA +LF  M   D+ SW +MIT + +  +L+KA+ELFD +P K 
Sbjct: 228 SWNAMISGYARNLRIDEALDLFMNMPERDVASWNIMITGFIQNKDLKKAQELFDEMP-KR 286

Query: 139 DTACWNAMVAGYAKIGNYNE-AKKLLDAMPSKNI----------VSWNSMLSGYTKNGEM 187
           +   W  M+ G  + GN +E A ++ + M    I          V   S L+G ++  ++
Sbjct: 287 NVVSWTTMMNGCLQ-GNESEMALQVFNGMLVDGIRPNQVTFLGAVDAGSNLAGLSEGQQV 345

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
           H      +   + D    + ++  Y +  ++  A K F    E++V+SW  M++ YA +G
Sbjct: 346 H--QMICKTPFQFDNFIESSLMKLYAKCGEIRLARKVFDLSGEKDVISWNGMIAAYAHHG 403

Query: 248 RMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----W 298
             +EA  L+++M       N V +  +++A    G ++E  R+F  M +   ++     +
Sbjct: 404 AGVEAIALYEKMQENRYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMAKDKSIAVRDEHY 463

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ--TAMISG 335
           + +ID   R  +LD+A+RL++ +  K  ++   +A++ G
Sbjct: 464 SCLIDLCSRAGRLDDAKRLINGLKLKPTSSTVWSALLGG 502


>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
          Length = 851

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/583 (38%), Positives = 356/583 (61%), Gaps = 5/583 (0%)

Query: 133 LLPNKEDTAC--WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
            LP+    A    NA +A  A+ GN   A+   +AMP +   S+N++L+GY +N     A
Sbjct: 8   FLPSSSTPAVVDANARIARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDAA 67

Query: 191 SKFFEAMEERDVVSWNLMLDGY-VELDDLDSAWKFFQKIP-EQNVVSWVTMLSGYARNGR 248
            + F  M  RD+ S+N ++ G  +    L  A      IP   +VVS+ ++L GY R+G 
Sbjct: 68  LRVFHRMPTRDLASYNALISGLSLRRHTLPDAAAALATIPYPPSVVSFTSLLRGYVRHGL 127

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRI 308
           + +A +LF QMP RN +++  ++  ++  G+++EA +LF EMP ++ V+WT M+ GY ++
Sbjct: 128 LADAIQLFRQMPERNHISYTVLLGGFLDAGRVDEARKLFDEMPAKDVVAWTAMLSGYCQV 187

Query: 309 AKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
            ++DEAR L D+MP +N+ + TAM+SGY QN +++ A ++F+ +   + V W  M+ GY 
Sbjct: 188 GRVDEARTLFDEMPKRNVVSWTAMVSGYAQNGQVNLARKLFEVMPERNEVSWTAMLFGYI 247

Query: 369 QCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
           Q GR+++A  LF  M +  +   N MI G+ Q   +D A  +F+ M +R +  +W+A+I 
Sbjct: 248 QAGRIEDAEELFNAMPDHPLAACNGMIVGFGQQGMVDAAKSVFDRMCERDDG-TWSAIIK 306

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
            + QNEF ++AL  F  M   G + ++ ++   L+ CA LA L  GR++H   ++  +  
Sbjct: 307 AYEQNEFLMEALSTFREMLHIGIRPNYPSVISILTVCAALAVLDYGREVHGAMLRRSFDM 366

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           D++  ++LITMY KCG +  A+ +F   +P DV+ WNS+I GYA +G   EA+ +F++M 
Sbjct: 367 DIYAVSALITMYIKCGNLDKAKRVFHMFEPKDVVMWNSMITGYAQHGLGEEALHIFDDMR 426

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
           + G+ PD +T+IG L+ACS+ G V  G  +F  M     I+P +EHYACM+DLL RAG +
Sbjct: 427 LAGMVPDGITYIGALTACSYTGKVKEGRDIFNSMRTKSGIKPGLEHYACMVDLLGRAGLV 486

Query: 609 DEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMH 668
           DEA  ++K M ++P+A IWG L+GACRMH+N ++  I+ +KL ELEP     Y LLS+++
Sbjct: 487 DEALYLIKTMPVEPDAVIWGALMGACRMHKNAEIAEISAKKLLELEPGNAGPYVLLSHIY 546

Query: 669 AEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD 711
             +GRW++   +R  +      K  GCSWIE   ++H F SGD
Sbjct: 547 TSSGRWEDASNMRKFISSRHLNKSLGCSWIEYDKRVHLFKSGD 589



 Score =  241 bits (616), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 157/546 (28%), Positives = 255/546 (46%), Gaps = 76/546 (13%)

Query: 35  IKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVK 94
           ++     S    V  N+ I+  A+ G +  AR  FE MP R   S+N+++AGY  N    
Sbjct: 6   VRFLPSSSTPAVVDANARIARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPD 65

Query: 95  EARELFDKMFRPDLFSWALMITCYT-RKGELEKARELFDLLPNKEDTACWNAMVAGYAKI 153
            A  +F +M   DL S+  +I+  + R+  L  A      +P       + +++ GY + 
Sbjct: 66  AALRVFHRMPTRDLASYNALISGLSLRRHTLPDAAAALATIPYPPSVVSFTSLLRGYVRH 125

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV 213
           G   +A +L   MP +N +S+  +L G+   G +  A K F+ M  +DVV+W  ML GY 
Sbjct: 126 GLLADAIQLFRQMPERNHISYTVLLGGFLDAGRVDEARKLFDEMPAKDVVAWTAMLSGYC 185

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
           ++  +D A   F ++P++NVVSW  M+SGYA+NG++  AR+LF+ MP RN V+W AM+  
Sbjct: 186 QVGRVDEARTLFDEMPKRNVVSWTAMVSGYAQNGQVNLARKLFEVMPERNEVSWTAMLFG 245

Query: 274 YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMI 333
           Y+Q G+IE+A  LF  MP+    +   MI G+ +   +D A+ + D+M  ++    +A+I
Sbjct: 246 YIQAGRIEDAEELFNAMPDHPLAACNGMIVGFGQQGMVDAAKSVFDRMCERDDGTWSAII 305

Query: 334 SGYVQNKRMDEANQIFDK---IGTH----------------------------------- 355
             Y QN+ + EA   F +   IG                                     
Sbjct: 306 KAYEQNEFLMEALSTFREMLHIGIRPNYPSVISILTVCAALAVLDYGREVHGAMLRRSFD 365

Query: 356 -DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            D+   + +I  Y +CG +D+A  +F     KD+V WN+MI GYAQ    ++A+ IF++ 
Sbjct: 366 MDIYAVSALITMYIKCGNLDKAKRVFHMFEPKDVVMWNSMITGYAQHGLGEEALHIFDD- 424

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
                                          M   G   D  T   AL+AC++   ++ G
Sbjct: 425 -------------------------------MRLAGMVPDGITYIGALTACSYTGKVKEG 453

Query: 475 RQI-HHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGY 531
           R I + +  KSG    L     ++ +  + G +  A  L K   PV  D + W +L+   
Sbjct: 454 RDIFNSMRTKSGIKPGLEHYACMVDLLGRAGLVDEALYLIKTM-PVEPDAVIWGALMGAC 512

Query: 532 AINGNA 537
            ++ NA
Sbjct: 513 RMHKNA 518



 Score =  233 bits (593), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 134/445 (30%), Positives = 236/445 (53%), Gaps = 46/445 (10%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N +I +L ++G +E A   F  M  + T +YN++++ Y +N   + A ++F +MP 
Sbjct: 17  VVDANARIARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDAALRVFHRMPT 76

Query: 75  RNLVSWNSMIA---------------------------------GYLHNDKVKEARELFD 101
           R+L S+N++I+                                 GY+ +  + +A +LF 
Sbjct: 77  RDLASYNALISGLSLRRHTLPDAAAALATIPYPPSVVSFTSLLRGYVRHGLLADAIQLFR 136

Query: 102 KMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKK 161
           +M   +  S+ +++  +   G +++AR+LFD +P K D   W AM++GY ++G  +EA+ 
Sbjct: 137 QMPERNHISYTVLLGGFLDAGRVDEARKLFDEMPAK-DVVAWTAMLSGYCQVGRVDEART 195

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA 221
           L D MP +N+VSW +M+SGY +NG+++LA K FE M ER+ VSW  ML GY++   ++ A
Sbjct: 196 LFDEMPKRNVVSWTAMVSGYAQNGQVNLARKLFEVMPERNEVSWTAMLFGYIQAGRIEDA 255

Query: 222 WKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIE 281
            + F  +P+  + +   M+ G+ + G +  A+ +FD+M  R+   W+A+I AY Q   + 
Sbjct: 256 EELFNAMPDHPLAACNGMIVGFGQQGMVDAAKSVFDRMCERDDGTWSAIIKAYEQNEFLM 315

Query: 282 EAARLFIEMPE----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK----NIAAQTAMI 333
           EA   F EM       N  S  +++     +A LD  R +   M  +    +I A +A+I
Sbjct: 316 EALSTFREMLHIGIRPNYPSVISILTVCAALAVLDYGREVHGAMLRRSFDMDIYAVSALI 375

Query: 334 SGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIV 389
           + Y++   +D+A ++F      DVV WN MI GYAQ G  +EA+++F  M    +  D +
Sbjct: 376 TMYIKCGNLDKAKRVFHMFEPKDVVMWNSMITGYAQHGLGEEALHIFDDMRLAGMVPDGI 435

Query: 390 TWNTMIAGYAQIRQMDDAVKIFEEM 414
           T+   +   +   ++ +   IF  M
Sbjct: 436 TYIGALTACSYTGKVKEGRDIFNSM 460



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 113/394 (28%), Positives = 212/394 (53%), Gaps = 31/394 (7%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           + G + +AI++F QM ++N ++Y  ++  +   GRV++ARKLF++MP +++V+W +M++G
Sbjct: 124 RHGLLADAIQLFRQMPERNHISYTVLLGGFLDAGRVDEARKLFDEMPAKDVVAWTAMLSG 183

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
           Y    +V EAR LFD+M + ++ SW  M++ Y + G++  AR+LF+++P + + + W AM
Sbjct: 184 YCQVGRVDEARTLFDEMPKRNVVSWTAMVSGYAQNGQVNLARKLFEVMPERNEVS-WTAM 242

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN 206
           + GY + G   +A++L +AMP   + + N M+ G+ + G +  A   F+ M ERD  +W+
Sbjct: 243 LFGYIQAGRIEDAEELFNAMPDHPLAACNGMIVGFGQQGMVDAAKSVFDRMCERDDGTWS 302

Query: 207 LMLDGYVELDDLDSAWKFFQKIPE-------QNVVSWVTMLSG-----YAR--NGRMLEA 252
            ++  Y + + L  A   F+++          +V+S +T+ +      Y R  +G ML  
Sbjct: 303 AIIKAYEQNEFLMEALSTFREMLHIGIRPNYPSVISILTVCAALAVLDYGREVHGAML-- 360

Query: 253 RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLD 312
           RR FD     ++ A +A+I  Y++ G +++A R+F     ++ V W +MI GY +    +
Sbjct: 361 RRSFDM----DIYAVSALITMYIKCGNLDKAKRVFHMFEPKDVVMWNSMITGYAQHGLGE 416

Query: 313 EARRLLDQMPYKNIAAQTAMISGYVQ----NKRMDEANQIFDKIGTHDVV-----CWNVM 363
           EA  + D M    +        G +       ++ E   IF+ + T   +      +  M
Sbjct: 417 EALHIFDDMRLAGMVPDGITYIGALTACSYTGKVKEGRDIFNSMRTKSGIKPGLEHYACM 476

Query: 364 IKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIA 396
           +    + G +DEA+ L + M V  D V W  ++ 
Sbjct: 477 VDLLGRAGLVDEALYLIKTMPVEPDAVIWGALMG 510



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 163/353 (46%), Gaps = 32/353 (9%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           ++   ++G+V  A K+F  M ++N V++ +M+  Y + GR+ DA +LF  MP   L + N
Sbjct: 212 VSGYAQNGQVNLARKLFEVMPERNEVSWTAMLFGYIQAGRIEDAEELFNAMPDHPLAACN 271

Query: 82  SMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF------DLLP 135
            MI G+     V  A+ +FD+M   D  +W+ +I  Y +   L +A   F       + P
Sbjct: 272 GMIVGFGQQGMVDAAKSVFDRMCERDDGTWSAIIKAYEQNEFLMEALSTFREMLHIGIRP 331

Query: 136 NKED-----TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           N        T C    V  Y +  +    ++  D     +I + +++++ Y K G +  A
Sbjct: 332 NYPSVISILTVCAALAVLDYGREVHGAMLRRSFDM----DIYAVSALITMYIKCGNLDKA 387

Query: 191 SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV----SWVTMLSGYARN 246
            + F   E +DVV WN M+ GY +    + A   F  +    +V    +++  L+  +  
Sbjct: 388 KRVFHMFEPKDVVMWNSMITGYAQHGLGEEALHIFDDMRLAGMVPDGITYIGALTACSYT 447

Query: 247 GRMLEARRLFDQMPIRNVVA-----WNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTT 300
           G++ E R +F+ M  ++ +      +  M+    + G ++EA  L   MP E + V W  
Sbjct: 448 GKVKEGRDIFNSMRTKSGIKPGLEHYACMVDLLGRAGLVDEALYLIKTMPVEPDAVIWGA 507

Query: 301 MIDGYVRIAKLDE-----ARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQI 348
           ++ G  R+ K  E     A++LL+  P  N      +   Y  + R ++A+ +
Sbjct: 508 LM-GACRMHKNAEIAEISAKKLLELEP-GNAGPYVLLSHIYTSSGRWEDASNM 558


>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 590

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/552 (41%), Positives = 349/552 (63%), Gaps = 5/552 (0%)

Query: 181 YTKNGEMH-LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTM 239
           ++ N + H L+ K F     +DV ++N+ +       ++ +A + F ++P ++ VSW ++
Sbjct: 28  HSFNRQFHPLSIKLFST---QDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSI 84

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWT 299
           ++GY +NG   E++RLF  MP +NVV+WN+MIA  ++  +I+EA + F  MP+RN  SW 
Sbjct: 85  ITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWN 144

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
            MI G VR  +++EA RL ++MP +N+ + TAM+ GY +   +++A  +F+ +   +VV 
Sbjct: 145 AMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVS 204

Query: 360 WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRN 419
           W VMI GY + G+ DEA NLF QM +K+IV    MI GY +  + D A  +F+++   R+
Sbjct: 205 WTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQI-PCRD 263

Query: 420 TVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHH 479
             SWNA+I+G+ QN    +ALK+   M + G + DHSTL   L+AC+ LA+LQ GR+ H 
Sbjct: 264 LASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHV 323

Query: 480 LAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATE 539
           L +KSGY + + + N+LITMY KCG I ++EL F+  D  DV+SWN++IA +A +G    
Sbjct: 324 LVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDR 383

Query: 540 AIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMI 599
           A+  F EM    V PD +TF+ +LSAC H G V   L  F  M E Y I P  EH+AC++
Sbjct: 384 ALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHFACLV 443

Query: 600 DLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTS 659
           D+LSR G++++A+++++ M  + + GIWG LL AC +H N+KLG +A +K+ ELEPQ + 
Sbjct: 444 DILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNSG 503

Query: 660 CYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAE 719
            Y +LSN++A AG W EV +VR  M   G +KQP  SW+E+ N++H FL  D        
Sbjct: 504 AYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKVHFFLGDDASHPEIHR 563

Query: 720 ICNTLKTLAAQI 731
           I   LK +  Q+
Sbjct: 564 IRLELKGMKLQM 575



 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 163/477 (34%), Positives = 238/477 (49%), Gaps = 74/477 (15%)

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
           L + +D   +N  +   A+ GN   A++L D MP ++ VSWNS+++GY KNG    + + 
Sbjct: 41  LFSTQDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYWKNGCFDESKRL 100

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEAR 253
           F  M  ++VVSWN M+ G +E + +D AW++FQ +P++N  SW  M+SG  R  R+ EA 
Sbjct: 101 FGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEAS 160

Query: 254 RLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDE 313
           RLF++MP RNV+++ AM+  Y + G+IE+A  LF  MP++N VSWT MI GYV   K DE
Sbjct: 161 RLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDE 220

Query: 314 ARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRM 373
           A  L +QMP KNI A TAMI+GY +  + D+A  +FD+I   D+  WN MI GYAQ G  
Sbjct: 221 AENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSG 280

Query: 374 DEAINLFRQMVN---------------------------------------KDIVTWNTM 394
           +EA+ L  QM+                                          I   N +
Sbjct: 281 EEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNAL 340

Query: 395 IAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
           I  Y +   + D+   F ++    + VSWNA+I+ F ++ F+  AL  F  M     + D
Sbjct: 341 ITMYCKCGSILDSELAFRQI-DHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPD 399

Query: 455 HSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
             T    LSAC H        ++H           L   NS+I  Y    R ++   L  
Sbjct: 400 GITFLSLLSACGHAG------KVH---------ESLNWFNSMIESYKIVPRPEHFACL-- 442

Query: 515 DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
               VD++S           G   +A K+ +EM  E    D   +  +L+AC HV L
Sbjct: 443 ----VDILS---------RGGQVEKAYKIIQEMPFEA---DCGIWGALLAAC-HVHL 482



 Score =  234 bits (598), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 128/395 (32%), Positives = 222/395 (56%), Gaps = 20/395 (5%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKV 93
           +IK+FS    ++   +N  I   A+ G +  AR+LF++MP R+ VSWNS+I GY  N   
Sbjct: 38  SIKLFST---QDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYWKNGCF 94

Query: 94  KEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKI 153
            E++ LF  M   ++ SW  MI        +++A + F  +P + +TA WNAM++G  + 
Sbjct: 95  DESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQR-NTASWNAMISGLVRY 153

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV 213
               EA +L + MP +N++S+ +M+ GY K GE+  A   F  M +++VVSW +M+ GYV
Sbjct: 154 DRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYV 213

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
           E    D A   F+++P++N+V+   M++GY + G+  +A+ LFDQ+P R++ +WNAMI  
Sbjct: 214 ENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITG 273

Query: 274 YVQRGQIEEAARLFIEM------PERNPVSWTTMIDGYVRIAKLDEARR---LLDQMPYK 324
           Y Q G  EEA +L  +M      P+ + +   +++     +A L E R+   L+ +  Y+
Sbjct: 274 YAQNGSGEEALKLHSQMLKMGMQPDHSTL--ISVLTACSSLASLQEGRKTHVLVLKSGYE 331

Query: 325 N-IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
           + I+   A+I+ Y +   + ++   F +I   DVV WN MI  +A+ G  D A+  F +M
Sbjct: 332 SRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEM 391

Query: 384 ----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
               V  D +T+ ++++      ++ +++  F  M
Sbjct: 392 RSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSM 426



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 125/425 (29%), Positives = 212/425 (49%), Gaps = 43/425 (10%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  IT   K+G  +E+ ++F  M  KN V++NSMI+   ++ R+++A + F+ MPQRN  
Sbjct: 82  NSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTA 141

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           SWN+MI+G +  D+V+EA  LF++M R ++ S+  M+  Y + GE+E+AR LF+ +P K 
Sbjct: 142 SWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQK- 200

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           +   W  M++GY + G ++EA+ L + MP KNIV+  +M++GY K G+   A   F+ + 
Sbjct: 201 NVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIP 260

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKI------PEQN-VVSWVTMLSGYA--RNGRM 249
            RD+ SWN M+ GY +    + A K   ++      P+ + ++S +T  S  A  + GR 
Sbjct: 261 CRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRK 320

Query: 250 LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIA 309
                L      R  +  NA+I  Y + G I ++   F ++   + VSW  MI  + R  
Sbjct: 321 THVLVLKSGYESRISIC-NALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHG 379

Query: 310 KLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ 369
             D A     +M                ++ R++            D + +  ++     
Sbjct: 380 FYDRALASFGEM----------------RSNRVEP-----------DGITFLSLLSACGH 412

Query: 370 CGRMDEAINLFRQMVNK-DIVTWNTMIAGYAQIR----QMDDAVKIFEEMGKRRNTVSWN 424
            G++ E++N F  M+    IV      A    I     Q++ A KI +EM    +   W 
Sbjct: 413 AGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWG 472

Query: 425 ALISG 429
           AL++ 
Sbjct: 473 ALLAA 477



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 175/319 (54%), Gaps = 13/319 (4%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  I    +  R++EA + F  M Q+NT ++N+MIS   +  RV +A +LFE+MP+
Sbjct: 109 VVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPR 168

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN++S+ +M+ GY    ++++AR LF+ M + ++ SW +MI+ Y   G+ ++A  LF+ +
Sbjct: 169 RNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQM 228

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE----MHLA 190
           P+K   A   AM+ GY K G  ++AK L D +P +++ SWN+M++GY +NG     + L 
Sbjct: 229 PDKNIVA-MTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLH 287

Query: 191 SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT----MLSGYARN 246
           S+  +   + D  +   +L     L  L    K    + +    S ++    +++ Y + 
Sbjct: 288 SQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKC 347

Query: 247 GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMI 302
           G +L++   F Q+   +VV+WNAMIAA+ + G  + A   F EM     E + +++ +++
Sbjct: 348 GSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLL 407

Query: 303 DGYVRIAKLDEARRLLDQM 321
                  K+ E+    + M
Sbjct: 408 SACGHAGKVHESLNWFNSM 426


>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
          Length = 1301

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/552 (40%), Positives = 347/552 (62%), Gaps = 5/552 (0%)

Query: 181 YTKNGEMH-LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTM 239
           ++ N + H L+ K F     +DV ++N+ +       ++ +A + F ++P ++ VSW ++
Sbjct: 28  HSFNRQFHPLSIKLFST---QDVYAFNVQIGNLARAGNIGAARQVFDEMPHRDTVSWNSI 84

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWT 299
           ++GY +NG   E++RLF  MP +NVV+WN+MIA  ++  +I+EA + F  MP+RN  SW 
Sbjct: 85  ITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWN 144

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
            MI G VR  +++EA RL ++MP +N+ + TAM+ GY +   +++A  +F+ +   +VV 
Sbjct: 145 AMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVS 204

Query: 360 WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRN 419
           W VMI GY + G+ DEA NLF QM +K+IV    MI GY +  + D A  +F+++  R +
Sbjct: 205 WTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCR-D 263

Query: 420 TVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHH 479
             SWNA+I+G+ QN    +ALK+   M + G + DHSTL   L+AC+ LA+LQ GR+ H 
Sbjct: 264 LASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHV 323

Query: 480 LAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATE 539
           L +KSGY + + + N+LITMY KCG I ++EL F+  D  DV+SWN++IA +A +G    
Sbjct: 324 LVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDR 383

Query: 540 AIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMI 599
           A+  F EM    V PD +TF+ +LSAC H G V   L  F  M   Y I    EH+AC++
Sbjct: 384 ALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIXSYKIVXRPEHFACLV 443

Query: 600 DLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTS 659
           D+LSR G++++A+++++ M  + + GIWG LL AC +H N+KLG +A +K+ ELEPQ + 
Sbjct: 444 DILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNSG 503

Query: 660 CYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAE 719
            Y +LSN++A AG W EV +VR  M   G +KQP  SW+E+ N++H FL  D        
Sbjct: 504 AYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKVHFFLGDDASHPEIHR 563

Query: 720 ICNTLKTLAAQI 731
           I   LK +  Q+
Sbjct: 564 IRLELKGMKLQM 575



 Score =  259 bits (663), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 167/494 (33%), Positives = 247/494 (50%), Gaps = 80/494 (16%)

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
           +D   +N  +   A+ GN   A+++ D MP ++ VSWNS+++GY KNG    + + F  M
Sbjct: 45  QDVYAFNVQIGNLARAGNIGAARQVFDEMPHRDTVSWNSIITGYWKNGCFDESKRLFGLM 104

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFD 257
             ++VVSWN M+ G +E + +D AW++FQ +P++N  SW  M+SG  R  R+ EA RLF+
Sbjct: 105 PTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMISGLVRYDRVEEASRLFE 164

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL 317
           +MP RNV+++ AM+  Y + G+IE+A  LF  MP++N VSWT MI GYV   K DEA  L
Sbjct: 165 EMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVENGKFDEAENL 224

Query: 318 LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAI 377
            +QMP KNI A TAMI+GY +  + D+A  +FD+I   D+  WN MI GYAQ G  +EA+
Sbjct: 225 FEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYAQNGSGEEAL 284

Query: 378 NLFRQMV---------------------------------------NKDIVTWNTMIAGY 398
            L  QM+                                          I   N +I  Y
Sbjct: 285 KLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMY 344

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
            +   + D+   F ++    + VSWNA+I+ F ++ F+  AL  F  M     + D  T 
Sbjct: 345 CKCGSILDSELAFRQID-HPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITF 403

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVND-LFVGNSLITMYAKCGRIQNAELLFKDAD 517
              LSAC H                +G V++ L   NS+I  Y    R ++   L     
Sbjct: 404 LSLLSACGH----------------AGKVHESLNWFNSMIXSYKIVXRPEHFACL----- 442

Query: 518 PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLK 577
            VD++S           G   +A K+ +EM  E    D   +  +L+AC HV L    +K
Sbjct: 443 -VDILSR---------GGQVEKAYKIIQEMPFEA---DCGIWGALLAAC-HVHL---NVK 485

Query: 578 LFE-CMTEVYAIEP 590
           L E    ++  +EP
Sbjct: 486 LGELAAKKIVELEP 499



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 127/395 (32%), Positives = 222/395 (56%), Gaps = 20/395 (5%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKV 93
           +IK+FS    ++   +N  I   A+ G +  AR++F++MP R+ VSWNS+I GY  N   
Sbjct: 38  SIKLFST---QDVYAFNVQIGNLARAGNIGAARQVFDEMPHRDTVSWNSIITGYWKNGCF 94

Query: 94  KEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKI 153
            E++ LF  M   ++ SW  MI        +++A + F  +P + +TA WNAM++G  + 
Sbjct: 95  DESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQR-NTASWNAMISGLVRY 153

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV 213
               EA +L + MP +N++S+ +M+ GY K GE+  A   F  M +++VVSW +M+ GYV
Sbjct: 154 DRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYV 213

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
           E    D A   F+++P++N+V+   M++GY + G+  +A+ LFDQ+P R++ +WNAMI  
Sbjct: 214 ENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITG 273

Query: 274 YVQRGQIEEAARLFIEM------PERNPVSWTTMIDGYVRIAKLDEARR---LLDQMPYK 324
           Y Q G  EEA +L  +M      P+ +  +  +++     +A L E R+   L+ +  Y+
Sbjct: 274 YAQNGSGEEALKLHSQMLKMGMQPDHS--TLISVLTACSSLASLQEGRKTHVLVLKSGYE 331

Query: 325 N-IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
           + I+   A+I+ Y +   + ++   F +I   DVV WN MI  +A+ G  D A+  F +M
Sbjct: 332 SRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEM 391

Query: 384 ----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
               V  D +T+ ++++      ++ +++  F  M
Sbjct: 392 RSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSM 426



 Score =  185 bits (469), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 127/425 (29%), Positives = 212/425 (49%), Gaps = 43/425 (10%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  IT   K+G  +E+ ++F  M  KN V++NSMI+   ++ R+++A + F+ MPQRN  
Sbjct: 82  NSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTA 141

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           SWN+MI+G +  D+V+EA  LF++M R ++ S+  M+  Y + GE+E+AR LF+ +P K 
Sbjct: 142 SWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQK- 200

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           +   W  M++GY + G ++EA+ L + MP KNIV+  +M++GY K G+   A   F+ + 
Sbjct: 201 NVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIP 260

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKI------PEQN-VVSWVTMLSGYA--RNGRM 249
            RD+ SWN M+ GY +    + A K   ++      P+ + ++S +T  S  A  + GR 
Sbjct: 261 CRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRK 320

Query: 250 LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIA 309
                L      R +   NA+I  Y + G I ++   F ++   + VSW  MI  + R  
Sbjct: 321 THVLVLKSGYESR-ISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHG 379

Query: 310 KLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ 369
             D A           +A+   M S  V+                 D + +  ++     
Sbjct: 380 FYDRA-----------LASFGEMRSNRVEP----------------DGITFLSLLSACGH 412

Query: 370 CGRMDEAINLFRQMVNK-DIVTWNTMIAGYAQIR----QMDDAVKIFEEMGKRRNTVSWN 424
            G++ E++N F  M+    IV      A    I     Q++ A KI +EM    +   W 
Sbjct: 413 AGKVHESLNWFNSMIXSYKIVXRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWG 472

Query: 425 ALISG 429
           AL++ 
Sbjct: 473 ALLAA 477


>gi|357118938|ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 618

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/559 (40%), Positives = 345/559 (61%), Gaps = 5/559 (0%)

Query: 168 SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK 227
           S ++   N  ++     G +  A + F+   +RDVVSW  ++  Y     L  A   F +
Sbjct: 32  SNHVQDPNRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALFDR 91

Query: 228 IPE--QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAAR 285
            P+  +NVV+W  +LSGYAR GR+ EA  LF +MP RNVV+WN M+ AY   G++ +A  
Sbjct: 92  -PDARRNVVTWTALLSGYARAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACT 150

Query: 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
           LF  MP R+  SW  ++   VR   +D+AR+L D+MP +N+ A T M++G  ++  ++EA
Sbjct: 151 LFNGMPVRDAGSWNILLAALVRSGNIDKARKLFDRMPERNVMAWTTMVAGIARSGSVNEA 210

Query: 346 NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMD 405
             +FD +   +VV WN MI GYA+   +DEA +LF +M  +DI +WN MI G+ Q + ++
Sbjct: 211 RALFDGMPERNVVSWNAMISGYARNHMIDEAHDLFMKMPTRDIASWNIMITGFIQNKNLE 270

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
            A ++F++M  RRN V+W  +++G+LQ+     AL++F  M  +G + +  T   A+ AC
Sbjct: 271 RAQELFDKM-PRRNVVTWTTMMNGYLQSIQSETALQLFNGMLIDGIRPNQVTFLGAVDAC 329

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
           ++LA L  G+Q+H +  K+ +  D F+ ++L+ +YAKCG I  A  +F  +   DVISWN
Sbjct: 330 SNLAGLSEGQQVHQMICKTPFQFDTFIESTLMNLYAKCGEIILARKVFNLSKEKDVISWN 389

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
            +IA YA +G   EAI L+E+M   G  P+ VT++G+LSACSH GLVD GL++FE M + 
Sbjct: 390 GMIAAYAHHGVGLEAIHLYEKMQENGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKD 449

Query: 586 YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI 645
            +I    EHY C+IDL SRAGRL +A  ++  +K++P++ +W  LLG C  H N  +G +
Sbjct: 450 RSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHGNESIGDL 509

Query: 646 AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705
           A   L E EP     Y LL N++A AG+W E  K+R  M   G +KQPGCSWIEV N++H
Sbjct: 510 AARNLLEAEPNNAGTYTLLCNIYASAGKWKEAAKIRSEMNDRGLKKQPGCSWIEVANKVH 569

Query: 706 TFLSGDPKQCRTAEICNTL 724
            F+S D K    +++ N+L
Sbjct: 570 VFVSRD-KSHSESDLINSL 587



 Score =  282 bits (722), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 160/464 (34%), Positives = 256/464 (55%), Gaps = 25/464 (5%)

Query: 92  KVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYA 151
           +V +AR LFD+    D+ SW  ++  Y  +G L  AR LFD    + +   W A+++GYA
Sbjct: 50  RVSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALFDRPDARRNVVTWTALLSGYA 109

Query: 152 KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
           + G  +EA+ L   MP +N+VSWN+ML  YT +G +  A   F  M  RD  SWN++L  
Sbjct: 110 RAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGMPVRDAGSWNILLAA 169

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
            V   ++D A K F ++PE+NV++W TM++G AR+G + EAR LFD MP RNVV+WNAMI
Sbjct: 170 LVRSGNIDKARKLFDRMPERNVMAWTTMVAGIARSGSVNEARALFDGMPERNVVSWNAMI 229

Query: 272 AAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
           + Y +   I+EA  LF++MP R+  SW  MI G+++   L+ A+ L D+MP +N+   T 
Sbjct: 230 SGYARNHMIDEAHDLFMKMPTRDIASWNIMITGFIQNKNLERAQELFDKMPRRNVVTWTT 289

Query: 332 MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL--------FRQM 383
           M++GY+Q+ + + A Q+F+ +    +    V        G +D   NL          QM
Sbjct: 290 MMNGYLQSIQSETALQLFNGMLIDGIRPNQVTF-----LGAVDACSNLAGLSEGQQVHQM 344

Query: 384 VNKDIVTWNTMIAG-----YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
           + K    ++T I       YA+  ++  A K+F  + K ++ +SWN +I+ +  +   L+
Sbjct: 345 ICKTPFQFDTFIESTLMNLYAKCGEIILARKVF-NLSKEKDVISWNGMIAAYAHHGVGLE 403

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK--SGYVNDLFVGNSL 496
           A+ ++  M + G K +  T    LSAC+H   +  G +I    +K  S  V D      L
Sbjct: 404 AIHLYEKMQENGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHY-TCL 462

Query: 497 ITMYAKCGRIQNAELL--FKDADPVDVISWNSLIAGYAINGNAT 538
           I + ++ GR+ +A+ L  F   +P   + WN+L+ G   +GN +
Sbjct: 463 IDLCSRAGRLGDAKRLIHFLKVEPSSTV-WNALLGGCNSHGNES 505



 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 166/527 (31%), Positives = 268/527 (50%), Gaps = 28/527 (5%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPD-- 107
           N  ++  A  GRV+DAR+LF++ P R++VSW +++A Y     + +AR LFD   RPD  
Sbjct: 39  NRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALFD---RPDAR 95

Query: 108 --LFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDA 165
             + +W  +++ Y R G +++A  LF  +P + +   WN M+  Y   G   +A  L + 
Sbjct: 96  RNVVTWTALLSGYARAGRVDEAEALFGRMPER-NVVSWNTMLEAYTSSGRVGDACTLFNG 154

Query: 166 MPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFF 225
           MP ++  SWN +L+   ++G +  A K F+ M ER+V++W  M+ G      ++ A   F
Sbjct: 155 MPVRDAGSWNILLAALVRSGNIDKARKLFDRMPERNVMAWTTMVAGIARSGSVNEARALF 214

Query: 226 QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAAR 285
             +PE+NVVSW  M+SGYARN  + EA  LF +MP R++ +WN MI  ++Q   +E A  
Sbjct: 215 DGMPERNVVSWNAMISGYARNHMIDEAHDLFMKMPTRDIASWNIMITGFIQNKNLERAQE 274

Query: 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQN----KR 341
           LF +MP RN V+WTTM++GY++  + + A +L + M    I        G V        
Sbjct: 275 LFDKMPRRNVVTWTTMMNGYLQSIQSETALQLFNGMLIDGIRPNQVTFLGAVDACSNLAG 334

Query: 342 MDEANQIFDKIGT----HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAG 397
           + E  Q+   I       D    + ++  YA+CG +  A  +F     KD+++WN MIA 
Sbjct: 335 LSEGQQVHQMICKTPFQFDTFIESTLMNLYAKCGEIILARKVFNLSKEKDVISWNGMIAA 394

Query: 398 YAQIRQMDDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA- 453
           YA      +A+ ++E+M   G + N V++  L+S    +    + L+IF  M ++   A 
Sbjct: 395 YAHHGVGLEAIHLYEKMQENGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAV 454

Query: 454 --DHSTLACALSACAHLAAL-QLGRQIHHLAIK-SGYVNDLFVGNSLITMYAKCGRIQNA 509
             +H T  C +  C+    L    R IH L ++ S  V +  +G          G +   
Sbjct: 455 RDEHYT--CLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLGGCNSHGNESIGDLAAR 512

Query: 510 ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
            LL  +A+P +  ++  L   YA  G   EA K+  EM   G+   P
Sbjct: 513 NLL--EAEPNNAGTYTLLCNIYASAGKWKEAAKIRSEMNDRGLKKQP 557



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 131/452 (28%), Positives = 228/452 (50%), Gaps = 61/452 (13%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           ++   ++GRV+EA  +F +M ++N V++N+M+ AY  +GRV DA  LF  MP R+  SWN
Sbjct: 105 LSGYARAGRVDEAEALFGRMPERNVVSWNTMLEAYTSSGRVGDACTLFNGMPVRDAGSWN 164

Query: 82  SMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTA 141
            ++A  + +  + +AR+LFD+M   ++ +W  M+    R G + +AR LFD +P + +  
Sbjct: 165 ILLAALVRSGNIDKARKLFDRMPERNVMAWTTMVAGIARSGSVNEARALFDGMPER-NVV 223

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
            WNAM++GYA+    +EA  L   MP+++I SWN M++G+ +N  +  A + F+ M  R+
Sbjct: 224 SWNAMISGYARNHMIDEAHDLFMKMPTRDIASWNIMITGFIQNKNLERAQELFDKMPRRN 283

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQ----------------------------------- 226
           VV+W  M++GY++    ++A + F                                    
Sbjct: 284 VVTWTTMMNGYLQSIQSETALQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSEGQQVHQ 343

Query: 227 ---KIPEQ-NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEE 282
              K P Q +     T+++ YA+ G ++ AR++F+    ++V++WN MIAAY   G   E
Sbjct: 344 MICKTPFQFDTFIESTLMNLYAKCGEIILARKVFNLSKEKDVISWNGMIAAYAHHGVGLE 403

Query: 283 AARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQM-PYKNIAAQ----TAMI 333
           A  L+ +M E     N V++  ++        +DE  R+ + M   ++IA +    T +I
Sbjct: 404 AIHLYEKMQENGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLI 463

Query: 334 SGYVQNKRMDEANQI--FDKIGTHDVVCWNVMIKGYAQCGRMDEAI------NLFRQMVN 385
               +  R+ +A ++  F K+     V WN ++ G    G  +E+I      NL     N
Sbjct: 464 DLCSRAGRLGDAKRLIHFLKVEPSSTV-WNALLGGCNSHG--NESIGDLAARNLLEAEPN 520

Query: 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
            +  T+  +   YA   +  +A KI  EM  R
Sbjct: 521 -NAGTYTLLCNIYASAGKWKEAAKIRSEMNDR 551



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 174/319 (54%), Gaps = 22/319 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +  L +SG +++A K+F +M ++N + + +M++  A++G VN+AR LF+ MP+RN+V
Sbjct: 164 NILLAALVRSGNIDKARKLFDRMPERNVMAWTTMVAGIARSGSVNEARALFDGMPERNVV 223

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           SWN+MI+GY  N  + EA +LF KM   D+ SW +MIT + +   LE+A+ELFD +P + 
Sbjct: 224 SWNAMISGYARNHMIDEAHDLFMKMPTRDIASWNIMITGFIQNKNLERAQELFDKMP-RR 282

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----------VSWNSMLSGYTKNGEMH 188
           +   W  M+ GY +      A +L + M    I          V   S L+G ++  ++H
Sbjct: 283 NVVTWTTMMNGYLQSIQSETALQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSEGQQVH 342

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGR 248
                 +   + D    + +++ Y +  ++  A K F    E++V+SW  M++ YA +G 
Sbjct: 343 --QMICKTPFQFDTFIESTLMNLYAKCGEIILARKVFNLSKEKDVISWNGMIAAYAHHGV 400

Query: 249 MLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WT 299
            LEA  L+++M       N V +  +++A    G ++E  R+F  M +   ++     +T
Sbjct: 401 GLEAIHLYEKMQENGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYT 460

Query: 300 TMIDGYVRIAKLDEARRLL 318
            +ID   R  +L +A+RL+
Sbjct: 461 CLIDLCSRAGRLGDAKRLI 479


>gi|302764988|ref|XP_002965915.1| hypothetical protein SELMODRAFT_167728 [Selaginella moellendorffii]
 gi|300166729|gb|EFJ33335.1| hypothetical protein SELMODRAFT_167728 [Selaginella moellendorffii]
          Length = 912

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 248/744 (33%), Positives = 398/744 (53%), Gaps = 71/744 (9%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  I    + G +  A +IF++M + ++ ++NSMI+ YA++G +  A  +F++ P+
Sbjct: 109 VVSWNSLIAGFSQHGFMSNADEIFARMPRWSSSSWNSMITGYAQSGDLASATAMFDRTPE 168

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
            N++SWN++I GY  N  + EA+ +FD+    D  SW  M+T Y + G+L+ A+E+FD  
Sbjct: 169 HNVISWNALITGYSDNRMIPEAKGVFDRAPGRDKISWNAMLTAYAQSGDLDSAKEVFDRT 228

Query: 135 PNKEDTAC------------------------------WNAMVAGYAKIGNYNEAKKLLD 164
           P ++  +C                              ++ M+  Y   G   EA+ L  
Sbjct: 229 PQQDIVSCTLMIKACAVQEILGHAVEIFAAMPDRNAVSYSFMIQIYIDQGKIGEAENLSR 288

Query: 165 AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD-VVSWNLMLDGYVELDDLDSAWK 223
            MP ++   W SMLS Y+++G +  A + F+    RD  VSWN +L  Y +   L  A  
Sbjct: 289 RMPQQDPTLWTSMLSAYSRHGLVEEARRIFDRAARRDDEVSWNALLSAYAQAGHLHLARS 348

Query: 224 FFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEA 283
            F+++P  +VV+W  +++   +NG++ EA  L+D +P R++VAW A+I AY   G++ E+
Sbjct: 349 TFERMPRHDVVAWTALIAVSGQNGQLEEAEVLYDLIPERDLVAWTALIQAYGVNGKLTES 408

Query: 284 ARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMD 343
            R++  MPERN VS T MI  Y +  ++ +AR++LD +P  + + +T+MI  Y QN  + 
Sbjct: 409 KRVYALMPERNRVSHTAMIIAYSQNGEVVQARKMLDTLPDPDQSTRTSMIVAYAQNGYIK 468

Query: 344 EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQ 403
           +A ++FD I   DV+  N M++ Y+    +D A  +F  +  K +V+WNTM+A YAQ   
Sbjct: 469 DAREMFDSIKNPDVIACNAMMEAYSSAQMLDHAKAMFDSIKQKTLVSWNTMVAAYAQAGN 528

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS 463
           +D+A  IF+ +   +N VS N +I  +  N    +A +IF  M ++              
Sbjct: 529 LDEAKSIFDSI-PHKNVVSHNVMIVAYAHNMDLAEARRIFYSMDEK-------------- 573

Query: 464 ACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
                                    D     +++ M A+ GR+  A+ LF      +V+S
Sbjct: 574 -------------------------DTVTWTAMVAMVAQHGRLAEAQELFAKMPYRNVVS 608

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMT 583
           WNSLIAG A  G+   A++    M  EG  PD +TF+G+L ACSHVGLV+ G   F  M 
Sbjct: 609 WNSLIAGMASCGHGMAAVRYLYVMRNEGAKPDHITFMGILIACSHVGLVEEGWTHFTSMQ 668

Query: 584 EVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLG 643
             + + P  EHY  M+D+L RAG+L  A E+++ M   P+ G WG+LLG+C+ H ++KLG
Sbjct: 669 GDHGLIPWREHYCRMVDVLGRAGQLGAARELLETMPFIPDVGAWGSLLGSCKTHSDVKLG 728

Query: 644 RIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQ 703
             A E L + + Q +  Y LL+NM++  GR  +   VR  M+  G +KQPG S I V   
Sbjct: 729 TRAAESLLQFDDQSSGPYVLLANMYSSVGRVADALAVRNRMKARGVKKQPGVSLIRVDGV 788

Query: 704 IHTFLSGDPKQCRTAEICNTLKTL 727
           +H F++G+    R  EI + L  L
Sbjct: 789 LHRFVAGEASHPRHQEILSELSRL 812



 Score =  248 bits (632), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 162/591 (27%), Positives = 289/591 (48%), Gaps = 69/591 (11%)

Query: 98  ELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYN 157
           ++ D   R +LF   L+I  Y +   ++ A+ +F+ LP + +      ++  Y++ G+  
Sbjct: 37  QIADGEHRGNLFLQNLIIQMYGKCSRIDDAQAVFNELP-EPNVFSRCILMQAYSENGDLG 95

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDD 217
            AK + D +PS N+VSWNS+++G++++G M  A + F  M      SWN M+ GY +  D
Sbjct: 96  SAKAIFDQIPSHNVVSWNSLIAGFSQHGFMSNADEIFARMPRWSSSSWNSMITGYAQSGD 155

Query: 218 LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR 277
           L SA   F + PE NV+SW  +++GY+ N  + EA+ +FD+ P R+ ++WNAM+ AY Q 
Sbjct: 156 LASATAMFDRTPEHNVISWNALITGYSDNRMIPEAKGVFDRAPGRDKISWNAMLTAYAQS 215

Query: 278 GQIE-------------------------------EAARLFIEMPERNPVSWTTMIDGYV 306
           G ++                                A  +F  MP+RN VS++ MI  Y+
Sbjct: 216 GDLDSAKEVFDRTPQQDIVSCTLMIKACAVQEILGHAVEIFAAMPDRNAVSYSFMIQIYI 275

Query: 307 RIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH-DVVCWNVMIK 365
              K+ EA  L  +MP ++    T+M+S Y ++  ++EA +IFD+     D V WN ++ 
Sbjct: 276 DQGKIGEAENLSRRMPQQDPTLWTSMLSAYSRHGLVEEARRIFDRAARRDDEVSWNALLS 335

Query: 366 GYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
            YAQ G +  A + F +M   D+V W  +IA   Q  Q+++A ++  ++   R+ V+W A
Sbjct: 336 AYAQAGHLHLARSTFERMPRHDVVAWTALIAVSGQNGQLEEA-EVLYDLIPERDLVAWTA 394

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS-------ACAHLAALQLGRQIH 478
           LI  +  N    ++ +++ LM  E  +  H+ +  A S       A   L  L    Q  
Sbjct: 395 LIQAYGVNGKLTESKRVYALMP-ERNRVSHTAMIIAYSQNGEVVQARKMLDTLPDPDQST 453

Query: 479 HLAI-----KSGYVN------------DLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
             ++     ++GY+             D+   N+++  Y+    + +A+ +F       +
Sbjct: 454 RTSMIVAYAQNGYIKDAREMFDSIKNPDVIACNAMMEAYSSAQMLDHAKAMFDSIKQKTL 513

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC 581
           +SWN+++A YA  GN  EA  +F+ +  + V    V  +    A +H   +    ++F  
Sbjct: 514 VSWNTMVAAYAQAGNLDEAKSIFDSIPHKNVVSHNVMIV----AYAHNMDLAEARRIFYS 569

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLG 632
           M E   +      +  M+ ++++ GRL EA E+   M  + N   W +L+ 
Sbjct: 570 MDEKDTVT-----WTAMVAMVAQHGRLAEAQELFAKMPYR-NVVSWNSLIA 614



 Score =  210 bits (534), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 137/538 (25%), Positives = 257/538 (47%), Gaps = 54/538 (10%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N ++  Y K    ++A+ + + +P  N+ S   ++  Y++NG++  A   F+ +   +VV
Sbjct: 51  NLIIQMYGKCSRIDDAQAVFNELPEPNVFSRCILMQAYSENGDLGSAKAIFDQIPSHNVV 110

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRN 263
           SWN ++ G+ +   + +A + F ++P  +  SW +M++GYA++G +  A  +FD+ P  N
Sbjct: 111 SWNSLIAGFSQHGFMSNADEIFARMPRWSSSSWNSMITGYAQSGDLASATAMFDRTPEHN 170

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
           V++WNA+I  Y     I EA  +F   P R+ +SW  M+  Y +   LD A+ + D+ P 
Sbjct: 171 VISWNALITGYSDNRMIPEAKGVFDRAPGRDKISWNAMLTAYAQSGDLDSAKEVFDRTPQ 230

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
           ++I + T MI      + +  A +IF  +   + V ++ MI+ Y   G++ EA NL R+M
Sbjct: 231 QDIVSCTLMIKACAVQEILGHAVEIFAAMPDRNAVSYSFMIQIYIDQGKIGEAENLSRRM 290

Query: 384 VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
             +D   W +M++ Y++   +++A +IF+   +R + VSWNAL+S + Q           
Sbjct: 291 PQQDPTLWTSMLSAYSRHGLVEEARRIFDRAARRDDEVSWNALLSAYAQ----------- 339

Query: 444 VLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
                    A H           HLA     R   H         D+    +LI +  + 
Sbjct: 340 ---------AGH----------LHLARSTFERMPRH---------DVVAWTALIAVSGQN 371

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
           G+++ AE+L+      D+++W +LI  Y +NG  TE+ +++  M       + V+   ++
Sbjct: 372 GQLEEAEVLYDLIPERDLVAWTALIQAYGVNGKLTESKRVYALMPER----NRVSHTAMI 427

Query: 564 SACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPN 623
            A S  G V    K+ + +      +P       MI   ++ G + +A EM   +K  P+
Sbjct: 428 IAYSQNGEVVQARKMLDTLP-----DPDQSTRTSMIVAYAQNGYIKDAREMFDSIK-NPD 481

Query: 624 AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKT-SCYALLSNMHAEAGRWDEVEKV 680
                 ++ A    Q +   +   + +     QKT   +  +   +A+AG  DE + +
Sbjct: 482 VIACNAMMEAYSSAQMLDHAKAMFDSIK----QKTLVSWNTMVAAYAQAGNLDEAKSI 535



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 160/328 (48%), Gaps = 23/328 (7%)

Query: 346 NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMD 405
           NQI D     ++   N++I+ Y +C R+D+A  +F ++   ++ +   ++  Y++   + 
Sbjct: 36  NQIADGEHRGNLFLQNLIIQMYGKCSRIDDAQAVFNELPEPNVFSRCILMQAYSENGDLG 95

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL-ACALSA 464
            A  IF+++    N VSWN+LI+GF Q+ F  +A +IF  M +    + +S +   A S 
Sbjct: 96  SAKAIFDQI-PSHNVVSWNSLIAGFSQHGFMSNADEIFARMPRWSSSSWNSMITGYAQSG 154

Query: 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
               A     R   H         ++   N+LIT Y+    I  A+ +F  A   D ISW
Sbjct: 155 DLASATAMFDRTPEH---------NVISWNALITGYSDNRMIPEAKGVFDRAPGRDKISW 205

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           N+++  YA +G+   A ++F+    +    D V+   ++ AC+   ++   +++F  M +
Sbjct: 206 NAMLTAYAQSGDLDSAKEVFDRTPQQ----DIVSCTLMIKACAVQEILGHAVEIFAAMPD 261

Query: 585 VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
             A+      Y+ MI +    G++ EA  + + M  + +  +W ++L A   H  ++  R
Sbjct: 262 RNAVS-----YSFMIQIYIDQGKIGEAENLSRRMP-QQDPTLWTSMLSAYSRHGLVEEAR 315

Query: 645 IAVEKLSELEPQKTSCYALLSNMHAEAG 672
              ++ +  +  + S  ALLS  +A+AG
Sbjct: 316 RIFDRAARRD-DEVSWNALLS-AYAQAG 341



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 6/160 (3%)

Query: 456 STLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD 515
           + LA A+ +C     L  GR+IH+      +  +LF+ N +I MY KC RI +A+ +F +
Sbjct: 13  NALATAIRSCGIAKDLAQGRKIHNQIADGEHRGNLFLQNLIIQMYGKCSRIDDAQAVFNE 72

Query: 516 ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
               +V S   L+  Y+ NG+   A  +F+++    V    V++  +++  S  G +   
Sbjct: 73  LPEPNVFSRCILMQAYSENGDLGSAKAIFDQIPSHNV----VSWNSLIAGFSQHGFMSNA 128

Query: 576 LKLFECMT--EVYAIEPLVEHYACMIDLLSRAGRLDEAFE 613
            ++F  M      +   ++  YA   DL S     D   E
Sbjct: 129 DEIFARMPRWSSSSWNSMITGYAQSGDLASATAMFDRTPE 168


>gi|357138593|ref|XP_003570875.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 664

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/627 (37%), Positives = 365/627 (58%), Gaps = 10/627 (1%)

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           D+F W  +IT + R G +  AR +FD +P + +   WN M++G        +A+++ DAM
Sbjct: 42  DIFQWNAVITAHLRAGRVAAARRVFDEMPER-NVFTWNCMISGLVGNRMLADARRVFDAM 100

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
           P +N VSW ++L+GY + G +  A + F+ M +R+VVSWN M+ GY+    ++ A + F 
Sbjct: 101 PVRNPVSWAALLTGYARCGRVAEARELFDRMPDRNVVSWNAMMSGYLRNGMVERARELFD 160

Query: 227 KIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
            +P +N VSW+TM+SGY +  R+ EAR LFD  P       NA+++ YV    +++A  L
Sbjct: 161 MMPSRNDVSWLTMISGYIKKRRLREARELFDLSPSHPTSVCNALLSGYVALSCLKDAEEL 220

Query: 287 FIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEAN 346
           F  M  R+PVSW  MI GY R  ++  A+ L D+MP K+  + TA++ GY+QN  +D + 
Sbjct: 221 FGRMQRRDPVSWNVMITGYARAGRMQVAQSLFDEMPQKDTISWTAVMRGYLQNGDVDASW 280

Query: 347 QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDD 406
           ++F  I   DVV WN M+ G+ Q  R+D+A+ LF +M  +D+V+WNT++ G+ Q   M  
Sbjct: 281 KVFQDIPDRDVVAWNTMMGGFVQSERLDDALRLFAEMPERDLVSWNTILQGHVQQGDMAT 340

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLD--ALKIFVLMTQEGKKADHSTLACALSA 464
           A   F  M ++  T SWN LISG      H D  AL +   M + G + D +TL+  +S 
Sbjct: 341 ANTWFRGMPEKDET-SWNTLISG------HKDEGALALLSEMIRGGLRPDEATLSVVISI 393

Query: 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
           CA L AL  G+ +H  A+K+G+ +D  V +SLI+MY+KCG I  A  +FK     D ++W
Sbjct: 394 CASLVALGYGKMVHLYAVKTGFEHDALVMSSLISMYSKCGLIAEASQVFKLLVQRDTVTW 453

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           N++IA YA +G A+EA+KLF +M  +G  PD  TF+ VLSAC+H G +  G + F  M E
Sbjct: 454 NAMIATYAYHGMASEALKLFNKMTKDGFRPDHATFLSVLSACAHKGDLYEGCRYFRSMQE 513

Query: 585 VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
            + + P  +HY+CM+DLL R G + +A++  + +        W TL  AC  H +++LG 
Sbjct: 514 DWNLTPRSDHYSCMVDLLGRLGFIYQAYDFTRKIPSDLQINAWETLFSACNAHGDVQLGE 573

Query: 645 IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQI 704
           +  + + +  P     Y LL+N++A    W     VR  M+  G +K+ GCSW+E+K ++
Sbjct: 574 VIAKDVLQARPSDGGMYTLLANIYASKEMWSSAASVRGVMKEQGLKKETGCSWVELKGEV 633

Query: 705 HTFLSGDPKQCRTAEICNTLKTLAAQI 731
            +F S D        IC  +  L+  I
Sbjct: 634 VSFSSNDNAHPLIEWICQEVDNLSVMI 660



 Score =  288 bits (737), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 167/503 (33%), Positives = 265/503 (52%), Gaps = 84/503 (16%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F  N  IT   ++GRV  A ++F +M ++N  T+N MIS    N  + DAR++F+ MP 
Sbjct: 43  IFQWNAVITAHLRAGRVAAARRVFDEMPERNVFTWNCMISGLVGNRMLADARRVFDAMPV 102

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN VSW +++ GY    +V EARELFD+M   ++ SW  M++ Y R G +E+ARELFD++
Sbjct: 103 RNPVSWAALLTGYARCGRVAEARELFDRMPDRNVVSWNAMMSGYLRNGMVERARELFDMM 162

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS-------------------------- 168
           P++ D + W  M++GY K     EA++L D  PS                          
Sbjct: 163 PSRNDVS-WLTMISGYIKKRRLREARELFDLSPSHPTSVCNALLSGYVALSCLKDAEELF 221

Query: 169 -----KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWK 223
                ++ VSWN M++GY + G M +A   F+ M ++D +SW  ++ GY++  D+D++WK
Sbjct: 222 GRMQRRDPVSWNVMITGYARAGRMQVAQSLFDEMPQKDTISWTAVMRGYLQNGDVDASWK 281

Query: 224 FFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEA 283
            FQ IP+++VV+W TM+ G+ ++ R+ +A RLF +MP R++V+WN ++  +VQ+G +  A
Sbjct: 282 VFQDIPDRDVVAWNTMMGGFVQSERLDDALRLFAEMPERDLVSWNTILQGHVQQGDMATA 341

Query: 284 ARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMIS--------- 334
              F  MPE++  SW T+I G+    K + A  LL +M    +    A +S         
Sbjct: 342 NTWFRGMPEKDETSWNTLISGH----KDEGALALLSEMIRGGLRPDEATLSVVISICASL 397

Query: 335 ---GYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTW 391
              GY +   +      F+    HD +  + +I  Y++CG + EA  +F+ +V +D VTW
Sbjct: 398 VALGYGKMVHLYAVKTGFE----HDALVMSSLISMYSKCGLIAEASQVFKLLVQRDTVTW 453

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
           N MIA YA      +A+K+F +                                MT++G 
Sbjct: 454 NAMIATYAYHGMASEALKLFNK--------------------------------MTKDGF 481

Query: 452 KADHSTLACALSACAHLAALQLG 474
           + DH+T    LSACAH   L  G
Sbjct: 482 RPDHATFLSVLSACAHKGDLYEG 504


>gi|413935435|gb|AFW69986.1| hypothetical protein ZEAMMB73_442164 [Zea mays]
          Length = 658

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/626 (37%), Positives = 359/626 (57%), Gaps = 7/626 (1%)

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           D+  W   I  + R G +  AR +FD +  + +   WN MV+G A+ G   +A+ + DAM
Sbjct: 35  DVGRWNSDIMAHFRAGRVGAARRVFDEM-RERNVFTWNCMVSGLARNGLLADARGVFDAM 93

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
           PS+N VSW ++L+GY + G +  A   F+ M  R+VVSWN M+ GY+    +D A + F 
Sbjct: 94  PSRNSVSWAALLTGYARRGRVAEARDLFDRMPHRNVVSWNAMVSGYLRNGMVDRARELFD 153

Query: 227 KIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA-WNAMIAAYVQRGQIEEAAR 285
            +P ++ VSW+ M+SGY R  R  EAR +FD+ P     +  NA+++ Y   G +++A  
Sbjct: 154 AMPARDDVSWLMMVSGYMRRKRFREAREIFDRAPSPPPTSVCNALLSGYAGYGYLKDAEE 213

Query: 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
           LF  M   + VSW  MI GY R   +  ARRL D+MP K+  + TA++ GY+QN  +D A
Sbjct: 214 LFGRMQRPDRVSWNAMITGYTRAGMMQVARRLFDEMPGKDTVSWTAIVRGYLQNGDVDAA 273

Query: 346 NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMD 405
            ++F  +   DV+ WN M+ G+    R+D+A+ LF  M ++D+V+WNT++ GY Q   MD
Sbjct: 274 WEVFQDMPDRDVLAWNTMMGGFVVSDRLDDALRLFADMPDRDLVSWNTILQGYIQQGDMD 333

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
            A   F  M ++  T SWN +ISG+ ++E    AL +   MT+ G + D +T +  +S C
Sbjct: 334 SATTWFRSMLEKDET-SWNTVISGY-KDE---GALSLLSEMTRGGYRPDQATWSVVISVC 388

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
           A LAAL  GR +H   IK+G+ +D  V +SLI+MY+KCG I  A  +F      D ++WN
Sbjct: 389 ASLAALGCGRMVHICTIKTGFEHDALVMSSLISMYSKCGLITEASQVFDLIVQRDTVTWN 448

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
           ++IA YA +G A EA+ LF+ M  +  +PD  TF+ VLSAC+H G +  G   F  M + 
Sbjct: 449 AMIATYAYHGLAAEALALFDRMTKDRFSPDHATFLSVLSACAHKGYLYEGCHYFRSMQQD 508

Query: 586 YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI 645
           + + P  +HY+CM+DLL R+G + +A+   + +        W TL  +C  H +I+LG +
Sbjct: 509 WNLVPRSDHYSCMVDLLGRSGFVHQAYNFTRKIPSNLQINAWETLFSSCNAHGDIQLGEL 568

Query: 646 AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705
             + + +  P     Y LLSN++A  G W     VR  M+  G +K+ GCSWIE+K  + 
Sbjct: 569 VAKNVLQSRPSDGGMYTLLSNIYAAKGMWSSAATVRGLMKEQGLKKETGCSWIELKGDVV 628

Query: 706 TFLSGDPKQCRTAEICNTLKTLAAQI 731
           +F S D       +IC  +  L+  I
Sbjct: 629 SFSSNDNAHPLIEQICQEVDNLSILI 654



 Score =  306 bits (784), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 201/635 (31%), Positives = 325/635 (51%), Gaps = 96/635 (15%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  N  ++ L ++G + +A  +F  M  +N+V++ ++++ YA+ GRV +AR LF++MP 
Sbjct: 67  VFTWNCMVSGLARNGLLADARGVFDAMPSRNSVSWAALLTGYARRGRVAEARDLFDRMPH 126

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN+VSWN+M++GYL N  V  ARELFD M   D  SW +M++ Y R+    +ARE+FD  
Sbjct: 127 RNVVSWNAMVSGYLRNGMVDRARELFDAMPARDDVSWLMMVSGYMRRKRFREAREIFDRA 186

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P+   T+  NA+++GYA  G   +A++L   M   + VSWN+M++GYT+ G M +A + F
Sbjct: 187 PSPPPTSVCNALLSGYAGYGYLKDAEELFGRMQRPDRVSWNAMITGYTRAGMMQVARRLF 246

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
           + M  +D VSW  ++ GY++  D+D+AW+ FQ +P+++V++W TM+ G+  + R+ +A R
Sbjct: 247 DEMPGKDTVSWTAIVRGYLQNGDVDAAWEVFQDMPDRDVLAWNTMMGGFVVSDRLDDALR 306

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
           LF  MP R++V+WN ++  Y+Q+G ++ A   F  M E++  SW T+I GY    K + A
Sbjct: 307 LFADMPDRDLVSWNTILQGYIQQGDMDSATTWFRSMLEKDETSWNTVISGY----KDEGA 362

Query: 315 RRLLDQMP---YKNIAAQTAMISGYVQN------KRMDEANQIFDKIG-THDVVCWNVMI 364
             LL +M    Y+   A  +++     +       RM     I  K G  HD +  + +I
Sbjct: 363 LSLLSEMTRGGYRPDQATWSVVISVCASLAALGCGRMVHICTI--KTGFEHDALVMSSLI 420

Query: 365 KGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
             Y++CG + EA  +F  +V +D VTWN MIA YA                       ++
Sbjct: 421 SMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYA-----------------------YH 457

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG---------- 474
            L +         +AL +F  MT++    DH+T    LSACAH   L  G          
Sbjct: 458 GLAA---------EALALFDRMTKDRFSPDHATFLSVLSACAHKGYLYEGCHYFRSMQQD 508

Query: 475 -----RQIHH-----LAIKSGYVNDLFVG----------NSLITMYAKC---GRIQNAEL 511
                R  H+     L  +SG+V+  +            N+  T+++ C   G IQ  EL
Sbjct: 509 WNLVPRSDHYSCMVDLLGRSGFVHQAYNFTRKIPSNLQINAWETLFSSCNAHGDIQLGEL 568

Query: 512 LFKD---ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
           + K+   + P D   +  L   YA  G  + A  +   M  +G+  +        + CS 
Sbjct: 569 VAKNVLQSRPSDGGMYTLLSNIYAAKGMWSSAATVRGLMKEQGLKKE--------TGCSW 620

Query: 569 VGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLS 603
           + L  G +  F      +   PL+E     +D LS
Sbjct: 621 IEL-KGDVVSFSSNDNAH---PLIEQICQEVDNLS 651



 Score = 47.4 bits (111), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 82/190 (43%), Gaps = 12/190 (6%)

Query: 477 IHHLAIKSG-YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
           +H +  ++  +  D+   NS I  + + GR+  A  +F +    +V +WN +++G A NG
Sbjct: 22  LHRICTRAPRHAGDVGRWNSDIMAHFRAGRVGAARRVFDEMRERNVFTWNCMVSGLARNG 81

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHY 595
              +A  +F+ M     + + V++  +L+  +  G V     LF+ M     +      +
Sbjct: 82  LLADARGVFDAM----PSRNSVSWAALLTGYARRGRVAEARDLFDRMPHRNVVS-----W 132

Query: 596 ACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEP 655
             M+    R G +D A E+   M  + +   W  ++      +  +  R   ++     P
Sbjct: 133 NAMVSGYLRNGMVDRARELFDAMPARDDVS-WLMMVSGYMRRKRFREAREIFDRAPS-PP 190

Query: 656 QKTSCYALLS 665
             + C ALLS
Sbjct: 191 PTSVCNALLS 200


>gi|242063912|ref|XP_002453245.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
 gi|241933076|gb|EES06221.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
          Length = 603

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/604 (37%), Positives = 351/604 (58%), Gaps = 6/604 (0%)

Query: 118 YTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSM 177
           + R G +  AR +FD + ++ +   WN M++G  + G   +A+ + D MP +N VSW ++
Sbjct: 3   HFRAGRVGAARRVFDEM-SERNVFTWNCMISGLVRNGMLTDARGVFDTMPFRNSVSWAAL 61

Query: 178 LSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV 237
           L+GY + G +  A + F+ M +R VVSWN M+ GY+    +D A   F  +P +N VSW+
Sbjct: 62  LTGYARCGRVAEARELFDRMPDRSVVSWNAMISGYLWNGMVDRARDLFDVMPARNDVSWL 121

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
            M+SGY +  R+ EAR +FD+ P       NA+++ Y + G +++A  LF  M   + VS
Sbjct: 122 MMISGYMKRKRVREAREIFDRAPSPTTSVCNALLSGYAEHGYLKDAEDLFGRMQTPDLVS 181

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV 357
           W  MI GY R   +  A+RL D+MP K+  + TA++ GY+QN  +D A ++F  +   DV
Sbjct: 182 WNAMITGYTRAGMMQVAQRLFDEMPEKDTVSWTAIVRGYLQNGDVDAAWKVFQDMPDRDV 241

Query: 358 VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
           + WN M+ G+    R+D+A+ LF  M ++D+V+WNT++ GY Q   MD A   F +M   
Sbjct: 242 LAWNTMMSGFVVSERLDDALRLFADMPDRDLVSWNTILQGYVQQGDMDGATAWFRKM-PE 300

Query: 418 RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI 477
           ++  SWN LISG+ ++E    AL +   MTQ G + D +T + A+S C+ LAAL  GR +
Sbjct: 301 KDEASWNTLISGY-KDE---GALNLLSEMTQGGYRPDQATWSVAISICSSLAALGCGRMV 356

Query: 478 HHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNA 537
           H   IK+G+  D  V +SLI+MY+KCG I  A  +F      D ++WN++IA YA +G A
Sbjct: 357 HVCTIKTGFERDALVMSSLISMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYAYHGLA 416

Query: 538 TEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYAC 597
            EA+ LF+ M  +G +PD  TF+ VLSAC+H G +  G   F  M + + + P  +HY+C
Sbjct: 417 AEALTLFDRMTKDGFSPDHATFLSVLSACAHKGYLYEGCHHFRSMQQDWNLIPRSDHYSC 476

Query: 598 MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK 657
           M+DLL R+G + +A+   + +        W TL  +C  H +I+LG +  + + +  P  
Sbjct: 477 MVDLLGRSGFVHQAYNFTRRIPSDLQINAWETLFSSCNAHGDIQLGELVAKNVLQSRPSD 536

Query: 658 TSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRT 717
              Y LLSN++A  G W     VR  M+  G +K+ GCSWIE+K  + +F S D      
Sbjct: 537 GGMYTLLSNIYAAKGMWSSAASVRGLMKEQGLKKETGCSWIELKGDVVSFSSNDKAHPLI 596

Query: 718 AEIC 721
            +IC
Sbjct: 597 EQIC 600



 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 171/476 (35%), Positives = 269/476 (56%), Gaps = 51/476 (10%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  N  I+ L ++G + +A  +F  M  +N+V++ ++++ YA+ GRV +AR+LF++MP 
Sbjct: 24  VFTWNCMISGLVRNGMLTDARGVFDTMPFRNSVSWAALLTGYARCGRVAEARELFDRMPD 83

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           R++VSWN+MI+GYL N  V  AR+LFD M   +  SW +MI+ Y ++  + +ARE+FD  
Sbjct: 84  RSVVSWNAMISGYLWNGMVDRARDLFDVMPARNDVSWLMMISGYMKRKRVREAREIFDRA 143

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P+   + C NA+++GYA+ G   +A+ L   M + ++VSWN+M++GYT+ G M +A + F
Sbjct: 144 PSPTTSVC-NALLSGYAEHGYLKDAEDLFGRMQTPDLVSWNAMITGYTRAGMMQVAQRLF 202

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
           + M E+D VSW  ++ GY++  D+D+AWK FQ +P+++V++W TM+SG+  + R+ +A R
Sbjct: 203 DEMPEKDTVSWTAIVRGYLQNGDVDAAWKVFQDMPDRDVLAWNTMMSGFVVSERLDDALR 262

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
           LF  MP R++V+WN ++  YVQ+G ++ A   F +MPE++  SW T+I GY    K + A
Sbjct: 263 LFADMPDRDLVSWNTILQGYVQQGDMDGATAWFRKMPEKDEASWNTLISGY----KDEGA 318

Query: 315 RRLLDQMPYKNIAAQTAMIS---------GYVQNKRMDEANQIFDKIG-THDVVCWNVMI 364
             LL +M         A  S           +   RM     I  K G   D +  + +I
Sbjct: 319 LNLLSEMTQGGYRPDQATWSVAISICSSLAALGCGRMVHVCTI--KTGFERDALVMSSLI 376

Query: 365 KGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
             Y++CG + EA  +F  +V +D VTWN MIA YA                         
Sbjct: 377 SMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYA------------------------- 411

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
                   +    +AL +F  MT++G   DH+T    LSACAH   L  G   HH 
Sbjct: 412 -------YHGLAAEALTLFDRMTKDGFSPDHATFLSVLSACAHKGYLYEG--CHHF 458



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 184/373 (49%), Gaps = 19/373 (5%)

Query: 273 AYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAM 332
           A+ + G++  A R+F EM ERN  +W  MI G VR   L +AR + D MP++N  +  A+
Sbjct: 2   AHFRAGRVGAARRVFDEMSERNVFTWNCMISGLVRNGMLTDARGVFDTMPFRNSVSWAAL 61

Query: 333 ISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWN 392
           ++GY +  R+ EA ++FD++    VV WN MI GY   G +D A +LF  M  ++ V+W 
Sbjct: 62  LTGYARCGRVAEARELFDRMPDRSVVSWNAMISGYLWNGMVDRARDLFDVMPARNDVSWL 121

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
            MI+GY + +++ +A +IF+       +V  NAL+SG+ ++ +  DA  +F  M    + 
Sbjct: 122 MMISGYMKRKRVREAREIFDRAPSPTTSVC-NALLSGYAEHGYLKDAEDLFGRM----QT 176

Query: 453 ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512
            D  +    ++       +Q+ +++     +     D     +++  Y + G +  A  +
Sbjct: 177 PDLVSWNAMITGYTRAGMMQVAQRLFDEMPE----KDTVSWTAIVRGYLQNGDVDAAWKV 232

Query: 513 FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
           F+D    DV++WN++++G+ ++    +A++LF +M       D V++  +L      G +
Sbjct: 233 FQDMPDRDVLAWNTMMSGFVVSERLDDALRLFADMPDR----DLVSWNTILQGYVQQGDM 288

Query: 573 DGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLG 632
           DG    F  M E          +  +I      G L+   EM +G   +P+   W   + 
Sbjct: 289 DGATAWFRKMPEKDEAS-----WNTLISGYKDEGALNLLSEMTQG-GYRPDQATWSVAIS 342

Query: 633 ACRMHQNIKLGRI 645
            C     +  GR+
Sbjct: 343 ICSSLAALGCGRM 355


>gi|357482291|ref|XP_003611431.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512766|gb|AES94389.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 735

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 255/682 (37%), Positives = 380/682 (55%), Gaps = 53/682 (7%)

Query: 82  SMIAGYLHNDKVKEARELFDKMFRPDLFS----WALMITCYTRKGELEKARELFDLLPNK 137
           S +  YL N  + EAR +       ++ S    W  M+T Y + G +E+AR LFD++P++
Sbjct: 42  SQLLHYLTNGFLHEARTILHSFPSGNIHSRVVHWTSMLTNYAKHGYVEQARNLFDIMPHR 101

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            +   +NAM++ Y + G   +AK+  D MP +N+VSW +MLSGY   G +  A K F+ M
Sbjct: 102 -NIVTYNAMLSAYLQSGMTRQAKRFFDDMPERNVVSWTAMLSGYAGLGWIDDARKVFDEM 160

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFD 257
            ER+VVSWN M+ G +   DL+ A K F   P++NVVSW  M+ GY  NGRM +A+ LFD
Sbjct: 161 PERNVVSWNSMVVGLIRNGDLEEARKVFDDTPDKNVVSWNAMIEGYVENGRMDDAKDLFD 220

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL 317
           Q+  RNV+ W +MI+ Y + G + EA RLF  MPE+N VSWT MI G+       EA  L
Sbjct: 221 QIECRNVITWTSMISGYCRVGDVNEAFRLFQIMPEKNVVSWTAMIGGFAWNGFYREALLL 280

Query: 318 -LDQMPY--------------------------KNIAAQT----------------AMIS 334
            LD M                            K + AQ                 +++ 
Sbjct: 281 FLDMMTLSDAKPNEETFVSLVYACAGMGFPCLGKQLHAQMILNRWKLDDYDCRLGRSLVR 340

Query: 335 GYVQNKRMDEANQIFD-KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNT 393
            Y     MD A  +F+  +   D   +N MI GY Q G++ +A  LF  +  ++ + W  
Sbjct: 341 MYSVCGLMDSARSVFEGDMKNCDDQSFNSMINGYVQAGQLHKAQELFDTVPIRNKIAWTC 400

Query: 394 MIAGYAQIRQMDDAVKIFEEM-GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
           MI+GY    Q+  A  +F++M    +++++W  +I G++QNE   +A+ +F  M  +G  
Sbjct: 401 MISGYLSAGQVLKASNLFDDMPDSDKDSIAWTLMIYGYVQNELIAEAINLFAEMMAQGAS 460

Query: 453 ADHSTLACALSACAHLAALQLGRQIHHLAIKS--GYVNDLFVGNSLITMYAKCGRIQNAE 510
             +ST A    A   +A L LG Q+H + +K+   Y  D+++ NSLI+MYAKCG I++A 
Sbjct: 461 PINSTYAVLFGAVGSVAYLDLGWQLHAMQLKTIYEYEYDVYLENSLISMYAKCGEIEDAY 520

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
            +F + +  D ISWNS+I G + +G A EA+ ++E M+  GV PD VTF+GVL+AC+H G
Sbjct: 521 RIFSNMNCRDKISWNSMIMGLSDHGRANEALNMYETMLEFGVYPDAVTFLGVLTACAHAG 580

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
            VD G +LF  M   YA++P +EHY  +I++L RAGR+ +A E V  + ++PN  IWG L
Sbjct: 581 FVDKGCELFSVMLNDYALQPGLEHYVSIINILGRAGRVKDAEEFVLRLPVEPNHTIWGAL 640

Query: 631 LGACRMHQ-NIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689
           +G C + + +  + R A  +L EL+P     +  L N++A   R  E   +R  M   G 
Sbjct: 641 IGVCGLSKTDADIARRAATRLLELDPLNAPGHVTLCNIYAANDRHLEETSLRREMRMKGV 700

Query: 690 QKQPGCSWIEVKNQIHTFLSGD 711
           +K PGCSWI VK ++H F SGD
Sbjct: 701 RKAPGCSWILVKGKVHAFSSGD 722



 Score =  270 bits (689), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 188/622 (30%), Positives = 312/622 (50%), Gaps = 73/622 (11%)

Query: 9   GNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKL 68
           GN  S V +    +T   K G VE+A  +F  M  +N VTYN+M+SAY ++G    A++ 
Sbjct: 66  GNIHSRVVHWTSMLTNYAKHGYVEQARNLFDIMPHRNIVTYNAMLSAYLQSGMTRQAKRF 125

Query: 69  FEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAR 128
           F+ MP+RN+VSW +M++GY     + +AR++FD+M   ++ SW  M+    R G+LE+AR
Sbjct: 126 FDDMPERNVVSWTAMLSGYAGLGWIDDARKVFDEMPERNVVSWNSMVVGLIRNGDLEEAR 185

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
           ++FD  P+K +   WNAM+ GY + G  ++AK L D +  +N+++W SM+SGY + G+++
Sbjct: 186 KVFDDTPDK-NVVSWNAMIEGYVENGRMDDAKDLFDQIECRNVITWTSMISGYCRVGDVN 244

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFF--------QKIPEQNVVSWVTML 240
            A + F+ M E++VVSW  M+ G+        A   F         K  E+  VS V   
Sbjct: 245 EAFRLFQIMPEKNVVSWTAMIGGFAWNGFYREALLLFLDMMTLSDAKPNEETFVSLVYAC 304

Query: 241 SG-----------------------------------YARNGRMLEARRLFD-QMPIRNV 264
           +G                                   Y+  G M  AR +F+  M   + 
Sbjct: 305 AGMGFPCLGKQLHAQMILNRWKLDDYDCRLGRSLVRMYSVCGLMDSARSVFEGDMKNCDD 364

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP-- 322
            ++N+MI  YVQ GQ+ +A  LF  +P RN ++WT MI GY+   ++ +A  L D MP  
Sbjct: 365 QSFNSMINGYVQAGQLHKAQELFDTVPIRNKIAWTCMISGYLSAGQVLKASNLFDDMPDS 424

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKI---------GTHDVVCWNVMIKGYAQCGRM 373
            K+  A T MI GYVQN+ + EA  +F ++          T+ V+   V    Y   G  
Sbjct: 425 DKDSIAWTLMIYGYVQNELIAEAINLFAEMMAQGASPINSTYAVLFGAVGSVAYLDLGWQ 484

Query: 374 DEAINLFR-QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
             A+ L        D+   N++I+ YA+  +++DA +IF  M   R+ +SWN++I G   
Sbjct: 485 LHAMQLKTIYEYEYDVYLENSLISMYAKCGEIEDAYRIFSNMNC-RDKISWNSMIMGLSD 543

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL-----AIKSGYV 487
           +    +AL ++  M + G   D  T    L+ACAH   +  G ++  +     A++ G  
Sbjct: 544 HGRANEALNMYETMLEFGVYPDAVTFLGVLTACAHAGFVDKGCELFSVMLNDYALQPGLE 603

Query: 488 NDLFVGNSLITMYAKCGRIQNAE--LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
           + +    S+I +  + GR+++AE  +L    +P   I W +LI    ++    +  +   
Sbjct: 604 HYV----SIINILGRAGRVKDAEEFVLRLPVEPNHTI-WGALIGVCGLSKTDADIARRAA 658

Query: 546 EMVMEGVAPDPVTFIGVLSACS 567
             ++E    DP+   G ++ C+
Sbjct: 659 TRLLE---LDPLNAPGHVTLCN 677



 Score =  231 bits (589), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 163/567 (28%), Positives = 262/567 (46%), Gaps = 98/567 (17%)

Query: 116 TCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI---- 171
           +C++ +    K R  F L        C  + +  Y   G  +EA+ +L + PS NI    
Sbjct: 18  SCFSLRSFSLKPRSHFPL-----HYECDESQLLHYLTNGFLHEARTILHSFPSGNIHSRV 72

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ 231
           V W SML+ Y K+G +  A   F+ M  R++V++N ML  Y++      A +FF  +PE+
Sbjct: 73  VHWTSMLTNYAKHGYVEQARNLFDIMPHRNIVTYNAMLSAYLQSGMTRQAKRFFDDMPER 132

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
           NVVSW  MLSGYA  G + +AR++FD+MP RNVV+WN+M+   ++ G +EEA ++F + P
Sbjct: 133 NVVSWTAMLSGYAGLGWIDDARKVFDEMPERNVVSWNSMVVGLIRNGDLEEARKVFDDTP 192

Query: 292 ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK 351
           ++N VSW  MI+GYV   ++D+A+ L DQ+  +N+   T+MISGY +   ++EA ++F  
Sbjct: 193 DKNVVSWNAMIEGYVENGRMDDAKDLFDQIECRNVITWTSMISGYCRVGDVNEAFRLFQI 252

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV--------------------------- 384
           +   +VV W  MI G+A  G   EA+ LF  M+                           
Sbjct: 253 MPEKNVVSWTAMIGGFAWNGFYREALLLFLDMMTLSDAKPNEETFVSLVYACAGMGFPCL 312

Query: 385 ----------------NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
                           + D     +++  Y+    MD A  +FE   K  +  S+N++I+
Sbjct: 313 GKQLHAQMILNRWKLDDYDCRLGRSLVRMYSVCGLMDSARSVFEGDMKNCDDQSFNSMIN 372

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
           G++Q      A ++F  +    K A                                   
Sbjct: 373 GYVQAGQLHKAQELFDTVPIRNKIA----------------------------------- 397

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGNATEAIKLFEE 546
                  +I+ Y   G++  A  LF D      D I+W  +I GY  N    EAI LF E
Sbjct: 398 ----WTCMISGYLSAGQVLKASNLFDDMPDSDKDSIAWTLMIYGYVQNELIAEAINLFAE 453

Query: 547 MVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC-MTEVYAIEPLVEHYACMIDLLSRA 605
           M+ +G +P   T+  +  A   V  +D G +L    +  +Y  E  V     +I + ++ 
Sbjct: 454 MMAQGASPINSTYAVLFGAVGSVAYLDLGWQLHAMQLKTIYEYEYDVYLENSLISMYAKC 513

Query: 606 GRLDEAFEMVKGM----KIKPNAGIWG 628
           G +++A+ +   M    KI  N+ I G
Sbjct: 514 GEIEDAYRIFSNMNCRDKISWNSMIMG 540



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 9/153 (5%)

Query: 5   LKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND 64
           LK+I      V+ +N  I+   K G +E+A +IFS M+ ++ +++NSMI   + +GR N+
Sbjct: 490 LKTIYEYEYDVYLENSLISMYAKCGEIEDAYRIFSNMNCRDKISWNSMIMGLSDHGRANE 549

Query: 65  ARKLFEQMPQRNL----VSWNSMIAGYLHNDKVKEARELF-----DKMFRPDLFSWALMI 115
           A  ++E M +  +    V++  ++    H   V +  ELF     D   +P L  +  +I
Sbjct: 550 ALNMYETMLEFGVYPDAVTFLGVLTACAHAGFVDKGCELFSVMLNDYALQPGLEHYVSII 609

Query: 116 TCYTRKGELEKARELFDLLPNKEDTACWNAMVA 148
               R G ++ A E    LP + +   W A++ 
Sbjct: 610 NILGRAGRVKDAEEFVLRLPVEPNHTIWGALIG 642


>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
          Length = 1198

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 218/504 (43%), Positives = 325/504 (64%), Gaps = 1/504 (0%)

Query: 228 IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF 287
           +P ++ VSW ++++GY +NG   E++RLF  MP +NVV+WN+MIA  ++  +I+EA + F
Sbjct: 1   MPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYF 60

Query: 288 IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347
             MP+RN  SW  MI G VR  +++EA RL ++MP +N+ + TAM+ GY +   +++A  
Sbjct: 61  QAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARA 120

Query: 348 IFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDA 407
           +F+ +   +VV W VMI GY + G+ DEA NLF QM +K+IV    MI GY +  + D A
Sbjct: 121 LFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKA 180

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
             +F+++  R +  SWNA+I+G+ QN    +ALK+   M + G + DHSTL   L+AC+ 
Sbjct: 181 KILFDQIPCR-DLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSS 239

Query: 468 LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSL 527
           LA+LQ GR+ H L +KSGY + + + N+LITMY KCG I ++EL F+  D  DV+SWN++
Sbjct: 240 LASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAM 299

Query: 528 IAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYA 587
           IA +A +G    A+  F EM    V PD +TF+ +LSAC H G V   L  F  M E Y 
Sbjct: 300 IAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYK 359

Query: 588 IEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAV 647
           I P  EH+AC++D+LSR G++++A+++++ M  + + GIWG LL AC +H N+KLG +A 
Sbjct: 360 IVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAA 419

Query: 648 EKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTF 707
           +K+ ELEPQ +  Y +LSN++A AG W EV +VR  M   G +KQP  SW+E+ N++H F
Sbjct: 420 KKIVELEPQNSGAYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKVHFF 479

Query: 708 LSGDPKQCRTAEICNTLKTLAAQI 731
           L  D        I   LK +  Q+
Sbjct: 480 LGDDASHPEIHRIRLELKGMKLQM 503



 Score =  243 bits (620), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 160/466 (34%), Positives = 233/466 (50%), Gaps = 80/466 (17%)

Query: 166 MPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFF 225
           MP ++ VSWNS+++GY KNG    + + F  M  ++VVSWN M+ G +E + +D AW++F
Sbjct: 1   MPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYF 60

Query: 226 QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAAR 285
           Q +P++N  SW  M+SG  R  R+ EA RLF++MP RNV+++ AM+  Y + G+IE+A  
Sbjct: 61  QAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARA 120

Query: 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
           LF  MP++N VSWT MI GYV   K DEA  L +QMP KNI A TAMI+GY +  + D+A
Sbjct: 121 LFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKA 180

Query: 346 NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV--------------------- 384
             +FD+I   D+  WN MI GYAQ G  +EA+ L  QM+                     
Sbjct: 181 KILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSL 240

Query: 385 ------------------NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNAL 426
                                I   N +I  Y +   + D+   F ++    + VSWNA+
Sbjct: 241 ASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQID-HPDVVSWNAM 299

Query: 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
           I+ F ++ F+  AL  F  M     + D  T    LSAC H                +G 
Sbjct: 300 IAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGH----------------AGK 343

Query: 487 VND-LFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
           V++ L   NS+I  Y    R ++   L      VD++S           G   +A K+ +
Sbjct: 344 VHESLNWFNSMIESYKIVPRPEHFACL------VDILSR---------GGQVEKAYKIIQ 388

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE-CMTEVYAIEP 590
           EM  E    D   +  +L+AC HV L    +KL E    ++  +EP
Sbjct: 389 EMPFEA---DCGIWGALLAAC-HVHL---NVKLGELAAKKIVELEP 427



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 120/338 (35%), Positives = 199/338 (58%), Gaps = 43/338 (12%)

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
           +P++ DT  WN+++ GY K G ++E+K+L   MP+KN+VSWNSM++G  ++  +  A ++
Sbjct: 1   MPHR-DTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQY 59

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEAR 253
           F+AM +R+  SWN M+ G V  D ++ A + F+++P +NV+S+  M+ GYA+ G + +AR
Sbjct: 60  FQAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQAR 119

Query: 254 RLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDE 313
            LF+ MP +NVV+W  MI+ YV+ G+ +EA  LF +MP++N V+ T MI GY +  K D+
Sbjct: 120 ALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDK 179

Query: 314 ARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD---KIG----------------- 353
           A+ L DQ+P +++A+  AMI+GY QN   +EA ++     K+G                 
Sbjct: 180 AKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSS 239

Query: 354 ---------THDVV----------CWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTM 394
                    TH +V            N +I  Y +CG + ++   FRQ+ + D+V+WN M
Sbjct: 240 LASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAM 299

Query: 395 IAGYAQIRQMDDAVKIFEEMGKRR---NTVSWNALISG 429
           IA +A+    D A+  F EM   R   + +++ +L+S 
Sbjct: 300 IAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSA 337



 Score =  197 bits (500), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 120/382 (31%), Positives = 207/382 (54%), Gaps = 36/382 (9%)

Query: 41  MSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF 100
           M  ++TV++NS+I+ Y KNG  +++++LF  MP +N+VSWNSMIAG + ++++ EA + F
Sbjct: 1   MPHRDTVSWNSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYF 60

Query: 101 DKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
             M + +  SW  MI+   R   +E+A  LF+ +P + +   + AMV GYAKIG   +A+
Sbjct: 61  QAMPQRNTASWNAMISGLVRYDRVEEASRLFEEMPRR-NVISYTAMVDGYAKIGEIEQAR 119

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
            L + MP KN+VSW  M+SGY +NG+   A   FE M ++++V+   M+ GY +    D 
Sbjct: 120 ALFNCMPQKNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDK 179

Query: 221 AWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQI 280
           A   F +IP +++ SW  M++GYA+NG   EA +L  QM               ++ G  
Sbjct: 180 AKILFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQM---------------LKMGMQ 224

Query: 281 EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR---LLDQMPYKN-IAAQTAMISGY 336
            + + L             +++     +A L E R+   L+ +  Y++ I+   A+I+ Y
Sbjct: 225 PDHSTLI------------SVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMY 272

Query: 337 VQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWN 392
            +   + ++   F +I   DVV WN MI  +A+ G  D A+  F +M    V  D +T+ 
Sbjct: 273 CKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFL 332

Query: 393 TMIAGYAQIRQMDDAVKIFEEM 414
           ++++      ++ +++  F  M
Sbjct: 333 SLLSACGHAGKVHESLNWFNSM 354



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 127/425 (29%), Positives = 212/425 (49%), Gaps = 43/425 (10%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  IT   K+G  +E+ ++F  M  KN V++NSMI+   ++ R+++A + F+ MPQRN  
Sbjct: 10  NSIITGYWKNGCFDESKRLFGLMPTKNVVSWNSMIAGCIEDERIDEAWQYFQAMPQRNTA 69

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           SWN+MI+G +  D+V+EA  LF++M R ++ S+  M+  Y + GE+E+AR LF+ +P K 
Sbjct: 70  SWNAMISGLVRYDRVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQK- 128

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           +   W  M++GY + G ++EA+ L + MP KNIV+  +M++GY K G+   A   F+ + 
Sbjct: 129 NVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIP 188

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKI------PEQN-VVSWVTMLSGYA--RNGRM 249
            RD+ SWN M+ GY +    + A K   ++      P+ + ++S +T  S  A  + GR 
Sbjct: 189 CRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRK 248

Query: 250 LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIA 309
                L      R +   NA+I  Y + G I ++   F ++   + VSW  MI  + R  
Sbjct: 249 THVLVLKSGYESR-ISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHG 307

Query: 310 KLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ 369
             D A           +A+   M S  V+                 D + +  ++     
Sbjct: 308 FYDRA-----------LASFGEMRSNRVEP----------------DGITFLSLLSACGH 340

Query: 370 CGRMDEAINLFRQMVNK-DIVTWNTMIAGYAQIR----QMDDAVKIFEEMGKRRNTVSWN 424
            G++ E++N F  M+    IV      A    I     Q++ A KI +EM    +   W 
Sbjct: 341 AGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWG 400

Query: 425 ALISG 429
           AL++ 
Sbjct: 401 ALLAA 405


>gi|225437951|ref|XP_002269187.1| PREDICTED: pentatricopeptide repeat-containing protein At1g32415,
           mitochondrial-like [Vitis vinifera]
          Length = 743

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 249/695 (35%), Positives = 391/695 (56%), Gaps = 55/695 (7%)

Query: 81  NSMIAGYLHNDKVKEARELFDKMFRPD------LFSWALMITCYTRKGELEKARELFDLL 134
           +S I   L   +++EAR + D+M  P+      +  W  +++ +++ G +++AR LF+++
Sbjct: 45  DSQILECLSQQRLREARHMLDEM--PNRGVLDRVVCWTSLLSKFSKNGFIDEARALFEIM 102

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P + +   +NAM++GY + G  ++A +  + MP +N+VSW S+L G    G +  A + F
Sbjct: 103 PER-NVVTYNAMLSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELF 161

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
             M ER+VVSWN ML G +    L+ A + F ++P ++ VSW  M++GYA + RM EAR 
Sbjct: 162 NVMPERNVVSWNSMLVGLIRSGQLEEARRVFNEMPVKSQVSWNVMIAGYAEHSRMEEARV 221

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
           LFD M  RNVV W +MI+ Y + G ++E   LF +MPERN VSWT MI G+       EA
Sbjct: 222 LFDGMGDRNVVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEA 281

Query: 315 RRLLDQMP-----------------------YKNIAAQ--------------------TA 331
             L  +M                        + ++  Q                     +
Sbjct: 282 LLLFLEMKGNYDMKPNDETFISLAYACAGIGFPHLGMQFHAHLIINCWDYDDYDGRLFKS 341

Query: 332 MISGYVQNKRMDEANQIFDKIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
           +I  Y     MD A  IF +   +++    N MI GY + G++++A +LF  +  +D ++
Sbjct: 342 LIHMYSMFGFMDFAWYIFFRNSMSYNTQSCNSMINGYIRIGQLEKAQSLFDTIPVRDKIS 401

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
           W +MI GY  + Q+  A  +F  M   R+ V+W  ++SG +QNE   +A  +F  M  +G
Sbjct: 402 WTSMINGYFNVGQIAKACYLFNNM-PDRDAVAWTVMVSGHVQNELFAEATYLFSEMRVKG 460

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
               +ST +  L A   +A L  GRQ H L +K+ +  DL + NSLI+MYAKCG I +A 
Sbjct: 461 VSPLNSTFSILLGAAGAMAYLDQGRQFHCLLMKTQFEFDLILQNSLISMYAKCGEIGDAY 520

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
            +F      D+ISWNS+I G++ +G  +EA+K+FE M+  G  P+ VTF+G+LSACSH G
Sbjct: 521 SIFSKMISRDLISWNSMIMGFSHHGLTSEALKVFEAMLTSGTHPNSVTFLGILSACSHAG 580

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
           L++ G +LF+ M++V+AI+P +EHY CM++LL RAG+++EA E +  +  +P+  IWG L
Sbjct: 581 LLNQGWELFDAMSDVFAIQPQLEHYVCMVNLLGRAGKVEEAEEFISKLPFEPDLTIWGAL 640

Query: 631 LGACRMHQ-NIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689
           LG C     N  + R A ++L EL+P     + +L N+HA  G+  E  ++R  M   G 
Sbjct: 641 LGVCGFGMINTGVARRAAKRLLELDPLNAPAHVVLCNIHASIGQRAEEGQLRKEMGLKGV 700

Query: 690 QKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTL 724
           +K PGCSWI +K + + FLSGD    +  E+ + L
Sbjct: 701 RKVPGCSWILLKGEPYVFLSGDRIHPQADEMLSLL 735



 Score =  261 bits (667), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 181/658 (27%), Positives = 314/658 (47%), Gaps = 128/658 (19%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNT----VTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           + +I +     R+ EA  +  +M  +      V + S++S ++KNG +++AR LFE MP+
Sbjct: 45  DSQILECLSQQRLREARHMLDEMPNRGVLDRVVCWTSLLSKFSKNGFIDEARALFEIMPE 104

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN+V++N+M++GY+   ++ +A   F++M   ++ SW  ++      G + +ARELF+++
Sbjct: 105 RNVVTYNAMLSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELFNVM 164

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P + +   WN+M+ G  + G   EA+++ + MP K+ VSWN M++GY ++  M  A   F
Sbjct: 165 PER-NVVSWNSMLVGLIRSGQLEEARRVFNEMPVKSQVSWNVMIAGYAEHSRMEEARVLF 223

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
           + M +R+VV+W  M+ GY    ++   +  FQK+PE+NVVSW  M+ G+A NG   EA  
Sbjct: 224 DGMGDRNVVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEALL 283

Query: 255 LF------------DQMPIRNVVA---------------------WN----------AMI 271
           LF            D+  I    A                     W+          ++I
Sbjct: 284 LFLEMKGNYDMKPNDETFISLAYACAGIGFPHLGMQFHAHLIINCWDYDDYDGRLFKSLI 343

Query: 272 AAYVQRGQIEEAARLFIEMPERNPVSWTT-----MIDGYVRIAKLDEARRLLDQMPYKNI 326
             Y   G ++ A  +F     RN +S+ T     MI+GY+RI +L++A+ L D +P ++ 
Sbjct: 344 HMYSMFGFMDFAWYIFF----RNSMSYNTQSCNSMINGYIRIGQLEKAQSLFDTIPVRDK 399

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
            + T+MI+GY    ++ +A  +F+ +   D V W VM+ G+ Q     EA  LF +M  K
Sbjct: 400 ISWTSMINGYFNVGQIAKACYLFNNMPDRDAVAWTVMVSGHVQNELFAEATYLFSEMRVK 459

Query: 387 ---------------------------------------DIVTWNTMIAGYAQIRQMDDA 407
                                                  D++  N++I+ YA+  ++ DA
Sbjct: 460 GVSPLNSTFSILLGAAGAMAYLDQGRQFHCLLMKTQFEFDLILQNSLISMYAKCGEIGDA 519

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
             IF +M   R+ +SWN++I GF  +    +ALK+F  M   G   +  T    LSAC+H
Sbjct: 520 YSIFSKM-ISRDLISWNSMIMGFSHHGLTSEALKVFEAMLTSGTHPNSVTFLGILSACSH 578

Query: 468 LAALQLGRQIHHLAIKSGYVNDLFVGNS-------LITMYAKCGRIQNA-ELLFKDADPV 519
              L  G ++         ++D+F           ++ +  + G+++ A E + K     
Sbjct: 579 AGLLNQGWELFDA------MSDVFAIQPQLEHYVCMVNLLGRAGKVEEAEEFISKLPFEP 632

Query: 520 DVISWNSL--IAGYAI--NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVD 573
           D+  W +L  + G+ +   G A  A K   E+       DP      L+A +HV L +
Sbjct: 633 DLTIWGALLGVCGFGMINTGVARRAAKRLLEL-------DP------LNAPAHVVLCN 677



 Score =  248 bits (634), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 139/469 (29%), Positives = 245/469 (52%), Gaps = 56/469 (11%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V   N  ++   + GR+ +A + F +M ++N V++ S++   A  GR+ +AR+LF  MP+
Sbjct: 107 VVTYNAMLSGYVQCGRLSDACRFFEEMPERNVVSWTSLLCGLANAGRIGEARELFNVMPE 166

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN+VSWNSM+ G + + +++EAR +F++M      SW +MI  Y     +E+AR LFD +
Sbjct: 167 RNVVSWNSMLVGLIRSGQLEEARRVFNEMPVKSQVSWNVMIAGYAEHSRMEEARVLFDGM 226

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG--------- 185
            ++ +   W +M++GY + GN  E   L   MP +N+VSW +M+ G+  NG         
Sbjct: 227 GDR-NVVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEALLLF 285

Query: 186 -EM--------------------------HLASKFFEAM-------EERDVVSWNLMLDG 211
            EM                          HL  +F   +       ++ D   +  ++  
Sbjct: 286 LEMKGNYDMKPNDETFISLAYACAGIGFPHLGMQFHAHLIINCWDYDDYDGRLFKSLIHM 345

Query: 212 YVELDDLDSAWK-FFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAM 270
           Y     +D AW  FF+     N  S  +M++GY R G++ +A+ LFD +P+R+ ++W +M
Sbjct: 346 YSMFGFMDFAWYIFFRNSMSYNTQSCNSMINGYIRIGQLEKAQSLFDTIPVRDKISWTSM 405

Query: 271 IAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT 330
           I  Y   GQI +A  LF  MP+R+ V+WT M+ G+V+     EA  L  +M  K ++   
Sbjct: 406 INGYFNVGQIAKACYLFNNMPDRDAVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLN 465

Query: 331 AMISGYVQN----KRMDEANQ----IFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
           +  S  +        +D+  Q    +       D++  N +I  YA+CG + +A ++F +
Sbjct: 466 STFSILLGAAGAMAYLDQGRQFHCLLMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSK 525

Query: 383 MVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALIS 428
           M+++D+++WN+MI G++      +A+K+FE M   G   N+V++  ++S
Sbjct: 526 MISRDLISWNSMIMGFSHHGLTSEALKVFEAMLTSGTHPNSVTFLGILS 574



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 124/424 (29%), Positives = 226/424 (53%), Gaps = 24/424 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  +  L +SG++EEA ++F++M  K+ V++N MI+ YA++ R+ +AR LF+ M  
Sbjct: 169 VVSWNSMLVGLIRSGQLEEARRVFNEMPVKSQVSWNVMIAGYAEHSRMEEARVLFDGMGD 228

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF--- 131
           RN+V+W SMI+GY     V+E   LF KM   ++ SW  MI  +   G  ++A  LF   
Sbjct: 229 RNVVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMIGGFAWNGFYKEALLLFLEM 288

Query: 132 ----DLLPNKED--TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS--WNSMLSGYTK 183
               D+ PN E   +  +     G+  +G    A  +++     +     + S++  Y+ 
Sbjct: 289 KGNYDMKPNDETFISLAYACAGIGFPHLGMQFHAHLIINCWDYDDYDGRLFKSLIHMYSM 348

Query: 184 NGEMHLA-SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG 242
            G M  A   FF      +  S N M++GY+ +  L+ A   F  IP ++ +SW +M++G
Sbjct: 349 FGFMDFAWYIFFRNSMSYNTQSCNSMINGYIRIGQLEKAQSLFDTIPVRDKISWTSMING 408

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER--NPV--SW 298
           Y   G++ +A  LF+ MP R+ VAW  M++ +VQ     EA  LF EM  +  +P+  ++
Sbjct: 409 YFNVGQIAKACYLFNNMPDRDAVAWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNSTF 468

Query: 299 TTMIDGYVRIAKLDEARR---LLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
           + ++     +A LD+ R+   LL +  ++ ++  Q ++IS Y +   + +A  IF K+ +
Sbjct: 469 SILLGAAGAMAYLDQGRQFHCLLMKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKMIS 528

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMV----NKDIVTWNTMIAGYAQIRQMDDAVKI 410
            D++ WN MI G++  G   EA+ +F  M+    + + VT+  +++  +    ++   ++
Sbjct: 529 RDLISWNSMIMGFSHHGLTSEALKVFEAMLTSGTHPNSVTFLGILSACSHAGLLNQGWEL 588

Query: 411 FEEM 414
           F+ M
Sbjct: 589 FDAM 592


>gi|242048970|ref|XP_002462229.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
 gi|241925606|gb|EER98750.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
          Length = 686

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/618 (37%), Positives = 352/618 (56%), Gaps = 50/618 (8%)

Query: 115 ITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSW 174
           IT + R G +  A  LF  + ++  T+ +NAM+ GYA  G    A     ++P  +  S+
Sbjct: 42  ITAHMRAGRVPDAERLFAAM-SRRSTSTYNAMLGGYAANGRLTLALSFFRSIPRPDSFSY 100

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
           N++L     +  +  A   F+ M  +D VS+N+M+  +     +  A  +F   PE++ V
Sbjct: 101 NTLLHALGVSSSLADARALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAV 160

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
           SW  ML+ Y RNGR+ EAR LFD     + ++WNA++A YVQ  QIEEA ++F  MP+R+
Sbjct: 161 SWNGMLAAYIRNGRIQEARDLFDSRTEWDAISWNALMAGYVQCSQIEEAQKMFNRMPQRD 220

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
            VSW TM+ G+ R   + EARRL D  P +++   TA++SGY QN  ++EA ++FD +  
Sbjct: 221 VVSWNTMVSGHARRGDMAEARRLFDVAPIRDVFTWTAVVSGYAQNGMLEEAKRVFDAMPE 280

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            + V WN M+  Y Q   M+EA  LF  M  +++ +WNTM+ GYAQ   +D+A  IF+ M
Sbjct: 281 KNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFDMM 340

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
             +++ VSW A+++ + Q  F  + L++F  M +                CA        
Sbjct: 341 -PQKDAVSWAAMLAAYSQGGFSEETLQLFKEMGR----------------CA-------- 375

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
                                   MY KCG ++ A   F++ +  D++SWN++IAGYA +
Sbjct: 376 ------------------------MYFKCGNMEEAHSAFEEMEERDIVSWNTMIAGYARH 411

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEH 594
           G   EA+++F+ M      PD +T +GVL+ACSH GLV+ G+  F  M   + +    EH
Sbjct: 412 GFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVTAKPEH 471

Query: 595 YACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE 654
           Y CMIDLL RAGRLDEA  ++K M  +P++ +WG LLGA R+H+N +LGR A EK+ ELE
Sbjct: 472 YTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELE 531

Query: 655 PQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQ 714
           P+    Y LLSN++A +G+W +V+K+R+ M   G +K PG SWIEV+N++HTF  GD   
Sbjct: 532 PENAGMYVLLSNIYASSGKWRDVDKMRLMMHERGVKKVPGFSWIEVQNKVHTFSVGDSVH 591

Query: 715 CRTAEICNTLKTLAAQIR 732
               +I   L+ L  +++
Sbjct: 592 PEREDIYGFLEDLDIRMK 609



 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 190/544 (34%), Positives = 290/544 (53%), Gaps = 50/544 (9%)

Query: 9   GNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKL 68
           G   + V  +NK IT   ++GRV +A ++F+ MS+++T TYN+M+  YA NGR+  A   
Sbjct: 29  GKPDAEVIRRNKAITAHMRAGRVPDAERLFAAMSRRSTSTYNAMLGGYAANGRLTLALSF 88

Query: 69  FEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAR 128
           F  +P+ +  S+N+++     +  + +AR LFD+M   D  S+ +MI+ +   G +  AR
Sbjct: 89  FRSIPRPDSFSYNTLLHALGVSSSLADARALFDEMPVKDSVSYNVMISSHANHGLVSLAR 148

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
             FDL P K D   WN M+A Y + G   EA+ L D+    + +SWN++++GY +  ++ 
Sbjct: 149 HYFDLAPEK-DAVSWNGMLAAYIRNGRIQEARDLFDSRTEWDAISWNALMAGYVQCSQIE 207

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGR 248
            A K F  M +RDVVSWN M+ G+    D+  A + F   P ++V +W  ++SGYA+NG 
Sbjct: 208 EAQKMFNRMPQRDVVSWNTMVSGHARRGDMAEARRLFDVAPIRDVFTWTAVVSGYAQNGM 267

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRI 308
           + EA+R+FD MP +N V+WNAM+AAYVQR  +EEA  LF  MP RN  SW TM+ GY + 
Sbjct: 268 LEEAKRVFDAMPEKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQA 327

Query: 309 AKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
             LDEAR + D MP K+  +  AM++ Y Q    +E  Q+F ++G             Y 
Sbjct: 328 GMLDEARAIFDMMPQKDAVSWAAMLAAYSQGGFSEETLQLFKEMGR---------CAMYF 378

Query: 369 QCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
           +CG M+EA + F +M  +DIV+WNTMIAGYA                             
Sbjct: 379 KCGNMEEAHSAFEEMEERDIVSWNTMIAGYA----------------------------- 409

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG-RQIHHLAIKSGYV 487
              ++ F  +AL++F  M +   K D  TL   L+AC+H   ++ G    + +    G  
Sbjct: 410 ---RHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVT 466

Query: 488 NDLFVGNSLITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAINGNA----TEAI 541
                   +I +  + GR+  A  L KD   +P D   W +L+    I+ N+      A 
Sbjct: 467 AKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEP-DSTMWGALLGASRIHRNSELGRNAAE 525

Query: 542 KLFE 545
           K+FE
Sbjct: 526 KIFE 529


>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
          Length = 620

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/560 (40%), Positives = 333/560 (59%), Gaps = 3/560 (0%)

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI-PEQNV 233
           N ++      G +  A K F+   ERDVVSW  ++  Y     L  A   F +    +NV
Sbjct: 44  NRLIVDLAAAGRVWDARKLFDGTPERDVVSWTALVSAYARRGMLRDARSLFDRSDARRNV 103

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           V+W  +LSGYAR G + EA  LF +MP RNVV+WN M+ AY   G+  +A  LF  MP R
Sbjct: 104 VTWTALLSGYARAGLVDEAEVLFQRMPQRNVVSWNTMLEAYAVAGRAGDACALFDRMPVR 163

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
           +  SW  ++   VR   +D+AR L  +MP +++ A T M+ G  ++  +DEA  +FD + 
Sbjct: 164 DAGSWNILLAMLVRSGSVDKARELFGRMPERDVMAWTTMVDGVARSGNVDEARLLFDSMP 223

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEE 413
             +VV WN MI GY +  R+DEA++LF +M ++DI + N MI G+ Q + +  A K+F+E
Sbjct: 224 ERNVVSWNAMISGYTRNHRLDEALDLFTKMPHRDIASCNIMITGFIQNKDLKRARKLFDE 283

Query: 414 MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQL 473
           M +R N V+W  +++G+L+ +    +L +F  M   G + +  T   AL AC+ LA L  
Sbjct: 284 MPER-NVVTWTTMMNGYLKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDACSDLATLCE 342

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           G+Q+H +  K+ +  D FVG++L+ +YAKCG +  A  LF  +   D+ISWN +IA YA 
Sbjct: 343 GKQVHQMICKTAFQVDTFVGSALMNVYAKCGEVGLARKLFDLSREKDLISWNGIIAAYAH 402

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVE 593
           +G   EAI L+E+M   G  P+ VT++ +LSACSH GLVD GLK+FE M    +I    E
Sbjct: 403 HGVGIEAIHLYEKMQGNGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDE 462

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMKIKPNAG-IWGTLLGACRMHQNIKLGRIAVEKLSE 652
           HY C+IDL SRAGRLD+A  ++  +KIKP +G +W  LLG C  H N  +G +A   L +
Sbjct: 463 HYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCNAHGNESIGNLAARNLIQ 522

Query: 653 LEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDP 712
            EP     Y LLSN++A AG+W E  ++R  M   G +KQPGCSWIEV N++H F++ D 
Sbjct: 523 AEPDNAGTYTLLSNIYASAGKWKEAAEIRSEMNNRGLKKQPGCSWIEVANKVHVFVARDK 582

Query: 713 KQCRTAEICNTLKTLAAQIR 732
               +  I   L+ +   +R
Sbjct: 583 SHSESDLIYGLLQNIHYMMR 602



 Score =  265 bits (678), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 180/569 (31%), Positives = 280/569 (49%), Gaps = 62/569 (10%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKE 95
           ++ S    ++ V Y S  SA A +  V   R    Q P R +V   +  AG     +V +
Sbjct: 9   RVRSSPHLRHAVAYVSYGSAAATSAAVGLERA---QDPNRLIVDLAA--AG-----RVWD 58

Query: 96  ARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGN 155
           AR+LFD     D+ SW  +++ Y R+G L  AR LFD    + +   W A+++GYA+ G 
Sbjct: 59  ARKLFDGTPERDVVSWTALVSAYARRGMLRDARSLFDRSDARRNVVTWTALLSGYARAGL 118

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
            +EA+ L   MP +N+VSWN+ML  Y   G    A   F+ M  RD  SWN++L   V  
Sbjct: 119 VDEAEVLFQRMPQRNVVSWNTMLEAYAVAGRAGDACALFDRMPVRDAGSWNILLAMLVRS 178

Query: 216 DDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
             +D A + F ++PE++V++W TM+ G AR+G + EAR LFD MP RNVV+WNAMI+ Y 
Sbjct: 179 GSVDKARELFGRMPERDVMAWTTMVDGVARSGNVDEARLLFDSMPERNVVSWNAMISGYT 238

Query: 276 QRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG 335
           +  +++EA  LF +MP R+  S   MI G+++   L  AR+L D+MP +N+   T M++G
Sbjct: 239 RNHRLDEALDLFTKMPHRDIASCNIMITGFIQNKDLKRARKLFDEMPERNVVTWTTMMNG 298

Query: 336 YVQNKRMDEANQIFDKI-----------------------------GTHDVVC------- 359
           Y++ K+ + +  +F  +                               H ++C       
Sbjct: 299 YLKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDACSDLATLCEGKQVHQMICKTAFQVD 358

Query: 360 ---WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM-- 414
               + ++  YA+CG +  A  LF     KD+++WN +IA YA      +A+ ++E+M  
Sbjct: 359 TFVGSALMNVYAKCGEVGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAIHLYEKMQG 418

Query: 415 -GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA---DHSTLACALSACAHLAA 470
            G R N V++  L+S    +    + LKIF  M  +   A   +H T  C +  C+    
Sbjct: 419 NGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYT--CLIDLCSRAGR 476

Query: 471 L-QLGRQIHHLAIK--SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSL 527
           L    R IH+L IK  SG V    +G          G +    L+   A+P +  ++  L
Sbjct: 477 LDDAKRLIHYLKIKPASGSVWSALLGGCNAHGNESIGNLAARNLI--QAEPDNAGTYTLL 534

Query: 528 IAGYAINGNATEAIKLFEEMVMEGVAPDP 556
              YA  G   EA ++  EM   G+   P
Sbjct: 535 SNIYASAGKWKEAAEIRSEMNNRGLKKQP 563



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 128/452 (28%), Positives = 226/452 (50%), Gaps = 60/452 (13%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           ++   ++G V+EA  +F +M Q+N V++N+M+ AYA  GR  DA  LF++MP R+  SWN
Sbjct: 110 LSGYARAGLVDEAEVLFQRMPQRNVVSWNTMLEAYAVAGRAGDACALFDRMPVRDAGSWN 169

Query: 82  SMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTA 141
            ++A  + +  V +ARELF +M   D+ +W  M+    R G +++AR LFD +P + +  
Sbjct: 170 ILLAMLVRSGSVDKARELFGRMPERDVMAWTTMVDGVARSGNVDEARLLFDSMPER-NVV 228

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
            WNAM++GY +    +EA  L   MP ++I S N M++G+ +N ++  A K F+ M ER+
Sbjct: 229 SWNAMISGYTRNHRLDEALDLFTKMPHRDIASCNIMITGFIQNKDLKRARKLFDEMPERN 288

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKI------PEQ------------------------ 231
           VV+W  M++GY++    + +   F+ +      P Q                        
Sbjct: 289 VVTWTTMMNGYLKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDACSDLATLCEGKQVHQ 348

Query: 232 -------NVVSWV--TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEE 282
                   V ++V   +++ YA+ G +  AR+LFD    +++++WN +IAAY   G   E
Sbjct: 349 MICKTAFQVDTFVGSALMNVYAKCGEVGLARKLFDLSREKDLISWNGIIAAYAHHGVGIE 408

Query: 283 AARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY-KNIAAQ----TAMI 333
           A  L+ +M       N V++  ++        +DE  ++ + M   ++IA +    T +I
Sbjct: 409 AIHLYEKMQGNGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLI 468

Query: 334 SGYVQNKRMDEANQI--FDKIGTHDVVCWNVMIKGYAQCGRMDEAI------NLFRQMVN 385
               +  R+D+A ++  + KI       W+ ++ G    G  +E+I      NL  Q   
Sbjct: 469 DLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCNAHG--NESIGNLAARNLI-QAEP 525

Query: 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
            +  T+  +   YA   +  +A +I  EM  R
Sbjct: 526 DNAGTYTLLSNIYASAGKWKEAAEIRSEMNNR 557


>gi|356546772|ref|XP_003541796.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Glycine max]
          Length = 713

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/668 (35%), Positives = 402/668 (60%), Gaps = 14/668 (2%)

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN 136
           L+  N+ IA    N  VKEA  +F KM   +  SW  M+T + + G+++ AR LFD +P 
Sbjct: 41  LIQCNTQIAENGRNGNVKEAESIFHKMPIKNTASWTAMLTAFAQNGQIQNARRLFDEMPQ 100

Query: 137 KEDTACWNAMVAGYAKIG-NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
           +  T   NAM++ Y + G N  +A +L   +  +N+VS+ +M+ G+ K G+ H+A K + 
Sbjct: 101 RT-TVSNNAMISAYIRNGCNVGKAYELFSVLAERNLVSYAAMIMGFVKAGKFHMAEKLYR 159

Query: 196 --AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEAR 253
               E RD    N +++GY+++ +++ A + F+ + E++VVSW  M+ G  R+GR+  AR
Sbjct: 160 ETPYEFRDPACSNALINGYLKMGEVNEALRIFENMGERDVVSWSAMVDGLCRDGRVAAAR 219

Query: 254 RLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-----ERNPVSWTTMIDGYVRI 308
            LFD+MP RNVV+W+AMI  Y+  G  +E   LF++M      E N  + T M       
Sbjct: 220 DLFDRMPDRNVVSWSAMIDGYMGEGFFQEGFCLFMDMKREGLVEVNSTTMTIMFKACGNC 279

Query: 309 AKLDEARR---LLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMI 364
            ++ E  +   L+ ++ ++ +     ++I+ Y      D A+++F  +   D+V WN +I
Sbjct: 280 GRMSEGMQIHGLVSRLGFEFDNVLSNSVITMYSMLGCTDMADKVFCTVSDKDIVTWNSLI 339

Query: 365 KGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
            GY     ++ A  +F +M  KD+++W  MIAG+++  ++++A+++F  +  + + V W 
Sbjct: 340 SGYIHNNEVEAAYRVFGRMPVKDVISWTAMIAGFSKSGRVENAIELFNMLPAKDDFV-WT 398

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
           A+ISGF+ N  + +AL  +  M  EG K +  T++  L+A A L AL  G QIH   +K 
Sbjct: 399 AIISGFVNNNEYEEALHWYARMIWEGCKPNPLTISSVLAASAALVALNEGLQIHTCILKM 458

Query: 485 GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLF 544
               +L + NSLI+ Y+K G + +A  +F D    +VIS+NS+I+G+A NG   EA+ ++
Sbjct: 459 NLEYNLSIQNSLISFYSKSGNVVDAYRIFLDVIEPNVISYNSIISGFAQNGFGDEALGIY 518

Query: 545 EEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSR 604
           ++M  EG  P+ VTF+ VLSAC+H GLVD G  +F  M   Y IEP  +HYACM+D+L R
Sbjct: 519 KKMQSEGHEPNHVTFLAVLSACTHAGLVDEGWNIFNTMKSHYGIEPEADHYACMVDILGR 578

Query: 605 AGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALL 664
           AG LDEA ++++ M  KP++G+WG +LGA + H  + L ++A +++++LEP+  + Y +L
Sbjct: 579 AGLLDEAIDLIRSMPFKPHSGVWGAILGASKTHLRLDLAKLAAQRITDLEPKNATPYVVL 638

Query: 665 SNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTL 724
           SNM++ AG+  + + V+++    G +K PGCSWI +KN++H FL+GD       EI  T+
Sbjct: 639 SNMYSAAGKKIDGDLVKMAKNLKGIKKSPGCSWITMKNKVHLFLAGDQSHGSIEEIKTTI 698

Query: 725 KTLAAQIR 732
            T+  +++
Sbjct: 699 LTMDREMQ 706



 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 157/534 (29%), Positives = 283/534 (52%), Gaps = 54/534 (10%)

Query: 4   SLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVN 63
           S+ S G    ++   N +I + G++G V+EA  IF +M  KNT ++ +M++A+A+NG++ 
Sbjct: 30  SINSGGKGSKFLIQCNTQIAENGRNGNVKEAESIFHKMPIKNTASWTAMLTAFAQNGQIQ 89

Query: 64  DARKLFEQMPQRNLVSWNSMIAGYLHND-KVKEARELFDKMFRPDLFSWALMITCYTRKG 122
           +AR+LF++MPQR  VS N+MI+ Y+ N   V +A ELF  +   +L S+A MI  + + G
Sbjct: 90  NARRLFDEMPQRTTVSNNAMISAYIRNGCNVGKAYELFSVLAERNLVSYAAMIMGFVKAG 149

Query: 123 ELEKARELFDLLPNK-EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
           +   A +L+   P +  D AC NA++ GY K+G  NEA ++ + M  +++VSW++M+ G 
Sbjct: 150 KFHMAEKLYRETPYEFRDPACSNALINGYLKMGEVNEALRIFENMGERDVVSWSAMVDGL 209

Query: 182 TKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFF-----QKIPEQNVVSW 236
            ++G +  A   F+ M +R+VVSW+ M+DGY+        +  F     + + E N  + 
Sbjct: 210 CRDGRVAAARDLFDRMPDRNVVSWSAMIDGYMGEGFFQEGFCLFMDMKREGLVEVNSTTM 269

Query: 237 VTMLSGYARNGRMLEARRLFDQMP-----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
             M       GRM E  ++   +        NV++ N++I  Y   G  + A ++F  + 
Sbjct: 270 TIMFKACGNCGRMSEGMQIHGLVSRLGFEFDNVLS-NSVITMYSMLGCTDMADKVFCTVS 328

Query: 292 ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK 351
           +++ V+W ++I GY+   +++ A R+  +MP K++ + TAMI+G+ ++ R++ A ++F+ 
Sbjct: 329 DKDIVTWNSLISGYIHNNEVEAAYRVFGRMPVKDVISWTAMIAGFSKSGRVENAIELFNM 388

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV--------------------------- 384
           +   D   W  +I G+      +EA++ + +M+                           
Sbjct: 389 LPAKDDFVWTAIISGFVNNNEYEEALHWYARMIWEGCKPNPLTISSVLAASAALVALNEG 448

Query: 385 ------------NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
                         ++   N++I+ Y++   + DA +IF ++    N +S+N++ISGF Q
Sbjct: 449 LQIHTCILKMNLEYNLSIQNSLISFYSKSGNVVDAYRIFLDV-IEPNVISYNSIISGFAQ 507

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
           N F  +AL I+  M  EG + +H T    LSAC H   +  G  I +  +KS Y
Sbjct: 508 NGFGDEALGIYKKMQSEGHEPNHVTFLAVLSACTHAGLVDEGWNIFN-TMKSHY 560



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 162/320 (50%), Gaps = 22/320 (6%)

Query: 26  GKSGRVEEAIKIFSQMS----QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           G  GR+ E ++I   +S    + + V  NS+I+ Y+  G  + A K+F  +  +++V+WN
Sbjct: 277 GNCGRMSEGMQIHGLVSRLGFEFDNVLSNSVITMYSMLGCTDMADKVFCTVSDKDIVTWN 336

Query: 82  SMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTA 141
           S+I+GY+HN++V+ A  +F +M   D+ SW  MI  +++ G +E A ELF++LP K+D  
Sbjct: 337 SLISGYIHNNEVEAAYRVFGRMPVKDVISWTAMIAGFSKSGRVENAIELFNMLPAKDDFV 396

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAM--------PSKNIVSWNSMLSGYTKNGEMHLASKF 193
            W A+++G+     Y EA      M        P        +  +    N  + + +  
Sbjct: 397 -WTAIISGFVNNNEYEEALHWYARMIWEGCKPNPLTISSVLAASAALVALNEGLQIHTCI 455

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEAR 253
            +   E ++   N ++  Y +  ++  A++ F  + E NV+S+ +++SG+A+NG   EA 
Sbjct: 456 LKMNLEYNLSIQNSLISFYSKSGNVVDAYRIFLDVIEPNVISYNSIISGFAQNGFGDEAL 515

Query: 254 RLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDG 304
            ++ +M       N V + A+++A    G ++E   +F  M     +      +  M+D 
Sbjct: 516 GIYKKMQSEGHEPNHVTFLAVLSACTHAGLVDEGWNIFNTMKSHYGIEPEADHYACMVDI 575

Query: 305 YVRIAKLDEARRLLDQMPYK 324
             R   LDEA  L+  MP+K
Sbjct: 576 LGRAGLLDEAIDLIRSMPFK 595



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 75/140 (53%), Gaps = 9/140 (6%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP---- 73
           QN  I+   KSG V +A +IF  + + N ++YNS+IS +A+NG  ++A  ++++M     
Sbjct: 467 QNSLISFYSKSGNVVDAYRIFLDVIEPNVISYNSIISGFAQNGFGDEALGIYKKMQSEGH 526

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKAR 128
           + N V++ ++++   H   V E   +F+ M       P+   +A M+    R G L++A 
Sbjct: 527 EPNHVTFLAVLSACTHAGLVDEGWNIFNTMKSHYGIEPEADHYACMVDILGRAGLLDEAI 586

Query: 129 ELFDLLPNKEDTACWNAMVA 148
           +L   +P K  +  W A++ 
Sbjct: 587 DLIRSMPFKPHSGVWGAILG 606


>gi|297734691|emb|CBI16742.3| unnamed protein product [Vitis vinifera]
          Length = 674

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/583 (38%), Positives = 349/583 (59%), Gaps = 5/583 (0%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N  ++   + GN   A+KL D MP  + VS+ +M++ Y KN E+  A K F+ M +R +V
Sbjct: 73  NIKISQLGRCGNVRGARKLFDEMPHHDNVSYTAMITAYLKNNELRKAEKLFQTMPDRTIV 132

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRN 263
           + + M+DGY +   +DSA K F  + + NV SW +++SGY R+G++ +A +LFDQMP +N
Sbjct: 133 AESAMIDGYAKAGLMDSAQKVFDAMIDTNVFSWTSLISGYFRDGQVAKACQLFDQMPAKN 192

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
           VV+W  M+  Y + G I++A  +F +MPE+N +SWT M+  YV   + DEA +L  +MP 
Sbjct: 193 VVSWTTMVLGYARNGLIDQARSVFNQMPEKNTISWTAMMKSYVDNGRTDEALKLFHEMPQ 252

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
           +N+ +   MISG +  KR++EA ++F  +   + V W +M+ G A+ G    A   F QM
Sbjct: 253 RNLYSWNTMISGCLDGKRVNEAFKLFHLMPLRNAVSWTIMVSGLARNGFTKLAREYFDQM 312

Query: 384 VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
            NKDI  WN MI  Y     + +A ++F  M   RN V+WNA+I G+ ++    +A+K  
Sbjct: 313 PNKDIAAWNAMITAYVDECLIVEASELFNLM-TERNIVTWNAMIDGYARHRPDGEAMKHL 371

Query: 444 VLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
           +LM +   + + +T+   L++C  +  L    Q H LAI  G   +  + N+LITMY++ 
Sbjct: 372 ILMLRSCIRPNETTMTIILTSCWGMLELM---QAHALAIVVGCECETSLSNALITMYSRI 428

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
           G I ++ + F+     DV+SW +++  +  +G+   A+ +F  M+  G  PD +TF+GVL
Sbjct: 429 GDISSSRIAFESLKAKDVVSWTAMLLAFTYHGHGDHALHVFGHMLKSGTKPDEITFVGVL 488

Query: 564 SACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM-KIKP 622
           SACSH GLV  G KLF+ M+  Y +EP  EHY+C++D+L RAG++ EA ++V  M + + 
Sbjct: 489 SACSHAGLVKKGQKLFDSMSRAYGLEPRAEHYSCLVDILGRAGQVHEAMDVVWKMPECER 548

Query: 623 NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRV 682
           +  + G LLGACR+H N+++     +KL EL+P  +  Y LL+N+ A  G WDE  +VR 
Sbjct: 549 DGAVLGALLGACRLHGNVEMADYIGQKLIELQPNSSGGYVLLANVFAARGNWDEFAEVRK 608

Query: 683 SMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLK 725
            M+    +K PG S IEVK + H F +GD    +  EI   L+
Sbjct: 609 KMKDRNVRKVPGFSQIEVKGKCHAFFAGDKSHPQVEEIYELLR 651



 Score =  282 bits (722), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 159/468 (33%), Positives = 243/468 (51%), Gaps = 38/468 (8%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           ++N N KI+QLG+ G V  A K+F +M   + V+Y +MI+AY KN  +  A KLF+ MP 
Sbjct: 69  IYNCNIKISQLGRCGNVRGARKLFDEMPHHDNVSYTAMITAYLKNNELRKAEKLFQTMPD 128

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           R +V+ ++MI GY     +  A+++FD M   ++FSW  +I+ Y R G++ KA +LFD +
Sbjct: 129 RTIVAESAMIDGYAKAGLMDSAQKVFDAMIDTNVFSWTSLISGYFRDGQVAKACQLFDQM 188

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P K +   W  MV GYA+ G  ++A+ + + MP KN +SW +M+  Y  NG    A K F
Sbjct: 189 PAK-NVVSWTTMVLGYARNGLIDQARSVFNQMPEKNTISWTAMMKSYVDNGRTDEALKLF 247

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
             M +R++ SWN M+ G ++   ++ A+K F  +P +N VSW  M+SG ARNG    AR 
Sbjct: 248 HEMPQRNLYSWNTMISGCLDGKRVNEAFKLFHLMPLRNAVSWTIMVSGLARNGFTKLARE 307

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
            FDQMP +++ AWNAMI AYV    I EA+ LF  M ERN V+W  MIDGY R     EA
Sbjct: 308 YFDQMPNKDIAAWNAMITAYVDECLIVEASELFNLMTERNIVTWNAMIDGYARHRPDGEA 367

Query: 315 RR----LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH-DVVCWNVMIKGYAQ 369
            +    +L      N    T +++       + +A+ +   +G   +    N +I  Y++
Sbjct: 368 MKHLILMLRSCIRPNETTMTIILTSCWGMLELMQAHALAIVVGCECETSLSNALITMYSR 427

Query: 370 CGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
            G +  +   F  +  KD+V+W  M+  +      D A+ +F  M K             
Sbjct: 428 IGDISSSRIAFESLKAKDVVSWTAMLLAFTYHGHGDHALHVFGHMLK------------- 474

Query: 430 FLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI 477
                               G K D  T    LSAC+H   ++ G+++
Sbjct: 475 -------------------SGTKPDEITFVGVLSACSHAGLVKKGQKL 503



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 17/196 (8%)

Query: 487 VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEE 546
           V D++  N  I+   +CG ++ A  LF +    D +S+ ++I  Y  N    +A KLF+ 
Sbjct: 66  VLDIYNCNIKISQLGRCGNVRGARKLFDEMPHHDNVSYTAMITAYLKNNELRKAEKLFQT 125

Query: 547 MVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM--TEVYAIEPLVEHYACMIDLLSR 604
           M    +  +     G   A    GL+D   K+F+ M  T V++   L+  Y        R
Sbjct: 126 MPDRTIVAESAMIDGYAKA----GLMDSAQKVFDAMIDTNVFSWTSLISGYF-------R 174

Query: 605 AGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALL 664
            G++ +A ++   M  K N   W T++     +  I   R    ++ E   + T  +  +
Sbjct: 175 DGQVAKACQLFDQMPAK-NVVSWTTMVLGYARNGLIDQARSVFNQMPE---KNTISWTAM 230

Query: 665 SNMHAEAGRWDEVEKV 680
              + + GR DE  K+
Sbjct: 231 MKSYVDNGRTDEALKL 246



 Score = 43.9 bits (102), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 36/167 (21%), Positives = 77/167 (46%), Gaps = 14/167 (8%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM----P 73
            N  IT   + G +  +   F  +  K+ V++ +M+ A+  +G  + A  +F  M     
Sbjct: 418 SNALITMYSRIGDISSSRIAFESLKAKDVVSWTAMLLAFTYHGHGDHALHVFGHMLKSGT 477

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKAR 128
           + + +++  +++   H   VK+ ++LFD M R     P    ++ ++    R G++ +A 
Sbjct: 478 KPDEITFVGVLSACSHAGLVKKGQKLFDSMSRAYGLEPRAEHYSCLVDILGRAGQVHEAM 537

Query: 129 ELFDLLPNKE-DTACWNAMVAGYAKIGNYNEA----KKLLDAMPSKN 170
           ++   +P  E D A   A++      GN   A    +KL++  P+ +
Sbjct: 538 DVVWKMPECERDGAVLGALLGACRLHGNVEMADYIGQKLIELQPNSS 584


>gi|297728297|ref|NP_001176512.1| Os11g0433100 [Oryza sativa Japonica Group]
 gi|62701919|gb|AAX92992.1| hypothetical protein LOC_Os11g24530 [Oryza sativa Japonica Group]
 gi|77550326|gb|ABA93123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125534237|gb|EAY80785.1| hypothetical protein OsI_35965 [Oryza sativa Indica Group]
 gi|125577016|gb|EAZ18238.1| hypothetical protein OsJ_33779 [Oryza sativa Japonica Group]
 gi|255680048|dbj|BAH95240.1| Os11g0433100 [Oryza sativa Japonica Group]
          Length = 622

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/551 (41%), Positives = 340/551 (61%), Gaps = 5/551 (0%)

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPE--QNVVSWVTMLSG 242
           G +  A + F+ M +RDVVSW  M+  Y     L  A   F + P+  +NVV+W  +LSG
Sbjct: 55  GRVSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLFDR-PDARRNVVTWTALLSG 113

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMI 302
           YAR  R+ EA  LF+ M  RNVV+WN M+ AY   G++E+A+ LF  MP R+  SW  ++
Sbjct: 114 YARARRVDEAEALFEGMAERNVVSWNTMLEAYTAVGRVEDASALFNRMPVRDAGSWNILL 173

Query: 303 DGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNV 362
            G VR   L+ AR++ ++MP +++ + T MISG  +N  +D+A  +FD +   +VV WN 
Sbjct: 174 CGLVRSGSLERARKMFERMPVRDVMSWTTMISGLARNGSVDDAWVLFDAMPERNVVSWNA 233

Query: 363 MIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
           MI GYA+  R++EA++LF +M  +D+ +WN MI G+ Q + +  A ++F+EM KR N ++
Sbjct: 234 MISGYARNHRIEEALDLFTKMPIRDVASWNIMITGFIQNKDLKSARQLFDEMPKR-NVIT 292

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482
           W  +++G+LQ      ALK+F  M  +G + +  T   +L AC++LAAL  G+Q+H +  
Sbjct: 293 WTTMMNGYLQCMQSEMALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEGQQVHQMIC 352

Query: 483 KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIK 542
           K+    D FV ++L+ +YAKCG I+ A  +F  +   D+ISWN +IA YA +G   EA+ 
Sbjct: 353 KTPSQFDTFVESTLMNLYAKCGEIRLARNVFDFSMEKDLISWNGIIAAYAHHGFGIEAMH 412

Query: 543 LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLL 602
           L++ M   G  P+  T++G+LSACSH GLVD GLK+FE M +  +I    EHY C++DL 
Sbjct: 413 LYKNMQENGYKPNDATYVGLLSACSHAGLVDEGLKIFESMVKDNSIVVRDEHYTCLVDLC 472

Query: 603 SRAGRLDEAFEMVKGMKIKPNAG-IWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCY 661
           SRAGRL++A  ++   KIKP +  +W  LLG C  H N  +G +A + L E EP     Y
Sbjct: 473 SRAGRLEDAKRLISWFKIKPTSSTVWSALLGGCNSHGNESIGDLAAKHLLEAEPDNAGTY 532

Query: 662 ALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEIC 721
            LL N++A AG+W E  ++R  M   G +KQPGCSWIEV N++H F+S D     +  I 
Sbjct: 533 TLLCNIYASAGKWKEAAEIRSEMNVRGLKKQPGCSWIEVANKVHVFVSRDKSHSESDLIN 592

Query: 722 NTLKTLAAQIR 732
           + L+ +   +R
Sbjct: 593 DLLQDIHRIMR 603



 Score =  276 bits (705), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 157/466 (33%), Positives = 256/466 (54%), Gaps = 28/466 (6%)

Query: 92  KVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYA 151
           +V +AR LFD M   D+ SW  M+  Y R+G L++AR LFD    + +   W A+++GYA
Sbjct: 56  RVSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLFDRPDARRNVVTWTALLSGYA 115

Query: 152 KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
           +    +EA+ L + M  +N+VSWN+ML  YT  G +  AS  F  M  RD  SWN++L G
Sbjct: 116 RARRVDEAEALFEGMAERNVVSWNTMLEAYTAVGRVEDASALFNRMPVRDAGSWNILLCG 175

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
            V    L+ A K F+++P ++V+SW TM+SG ARNG + +A  LFD MP RNVV+WNAMI
Sbjct: 176 LVRSGSLERARKMFERMPVRDVMSWTTMISGLARNGSVDDAWVLFDAMPERNVVSWNAMI 235

Query: 272 AAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
           + Y +  +IEEA  LF +MP R+  SW  MI G+++   L  AR+L D+MP +N+   T 
Sbjct: 236 SGYARNHRIEEALDLFTKMPIRDVASWNIMITGFIQNKDLKSARQLFDEMPKRNVITWTT 295

Query: 332 MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL--------FRQM 383
           M++GY+Q  + + A ++F+ +    +    V        G +D   NL          QM
Sbjct: 296 MMNGYLQCMQSEMALKLFNCMLVQGIQPNQVTF-----LGSLDACSNLAALCEGQQVHQM 350

Query: 384 VNK-----DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
           + K     D    +T++  YA+  ++  A  +F +    ++ +SWN +I+ +  + F ++
Sbjct: 351 ICKTPSQFDTFVESTLMNLYAKCGEIRLARNVF-DFSMEKDLISWNGIIAAYAHHGFGIE 409

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS--- 495
           A+ ++  M + G K + +T    LSAC+H   +  G +I    +K    N + V +    
Sbjct: 410 AMHLYKNMQENGYKPNDATYVGLLSACSHAGLVDEGLKIFESMVKD---NSIVVRDEHYT 466

Query: 496 -LITMYAKCGRIQNAELLFK--DADPVDVISWNSLIAGYAINGNAT 538
            L+ + ++ GR+++A+ L       P     W++L+ G   +GN +
Sbjct: 467 CLVDLCSRAGRLEDAKRLISWFKIKPTSSTVWSALLGGCNSHGNES 512



 Score =  182 bits (461), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 118/449 (26%), Positives = 213/449 (47%), Gaps = 54/449 (12%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           ++   ++ RV+EA  +F  M+++N V++N+M+ AY   GRV DA  LF +MP R+  SWN
Sbjct: 111 LSGYARARRVDEAEALFEGMAERNVVSWNTMLEAYTAVGRVEDASALFNRMPVRDAGSWN 170

Query: 82  SMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTA 141
            ++ G + +  ++ AR++F++M   D+ SW  MI+   R G ++ A  LFD +P + +  
Sbjct: 171 ILLCGLVRSGSLERARKMFERMPVRDVMSWTTMISGLARNGSVDDAWVLFDAMPER-NVV 229

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
            WNAM++GYA+     EA  L   MP +++ SWN M++G+ +N ++  A + F+ M +R+
Sbjct: 230 SWNAMISGYARNHRIEEALDLFTKMPIRDVASWNIMITGFIQNKDLKSARQLFDEMPKRN 289

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQ----------------------------------- 226
           V++W  M++GY++    + A K F                                    
Sbjct: 290 VITWTTMMNGYLQCMQSEMALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEGQQVHQ 349

Query: 227 ---KIPEQ-NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEE 282
              K P Q +     T+++ YA+ G +  AR +FD    +++++WN +IAAY   G   E
Sbjct: 350 MICKTPSQFDTFVESTLMNLYAKCGEIRLARNVFDFSMEKDLISWNGIIAAYAHHGFGIE 409

Query: 283 AARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA-----QTAMI 333
           A  L+  M E     N  ++  ++        +DE  ++ + M   N         T ++
Sbjct: 410 AMHLYKNMQENGYKPNDATYVGLLSACSHAGLVDEGLKIFESMVKDNSIVVRDEHYTCLV 469

Query: 334 SGYVQNKRMDEANQIFD--KIGTHDVVCWNVMIKGYAQCGRM---DEAINLFRQMVNKDI 388
               +  R+++A ++    KI       W+ ++ G    G     D A     +    + 
Sbjct: 470 DLCSRAGRLEDAKRLISWFKIKPTSSTVWSALLGGCNSHGNESIGDLAAKHLLEAEPDNA 529

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
            T+  +   YA   +  +A +I  EM  R
Sbjct: 530 GTYTLLCNIYASAGKWKEAAEIRSEMNVR 558



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 125/449 (27%), Positives = 219/449 (48%), Gaps = 45/449 (10%)

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM-PYKNI 326
           N  +A     G++ +A RLF  MP+R+ VSWT M+  Y R   L EAR L D+    +N+
Sbjct: 45  NWRVAELAAAGRVSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLFDRPDARRNV 104

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
              TA++SGY + +R+DEA  +F+ +   +VV WN M++ Y   GR+++A  LF +M  +
Sbjct: 105 VTWTALLSGYARARRVDEAEALFEGMAERNVVSWNTMLEAYTAVGRVEDASALFNRMPVR 164

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446
           D  +WN ++ G  +   ++ A K+FE M   R+ +SW  +ISG  +N    DA  +F  M
Sbjct: 165 DAGSWNILLCGLVRSGSLERARKMFERM-PVRDVMSWTTMISGLARNGSVDDAWVLFDAM 223

Query: 447 TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI 506
            +    + ++ ++          AL L  ++         + D+   N +IT + +   +
Sbjct: 224 PERNVVSWNAMISGYARNHRIEEALDLFTKMP--------IRDVASWNIMITGFIQNKDL 275

Query: 507 QNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
           ++A  LF +    +VI+W +++ GY     +  A+KLF  M+++G+ P+ VTF+G L AC
Sbjct: 276 KSARQLFDEMPKRNVITWTTMMNGYLQCMQSEMALKLFNCMLVQGIQPNQVTFLGSLDAC 335

Query: 567 SHVGLVDGGLKLFE--CMT----EVYAIEPLVEHYA-C--------------MIDLLSRA 605
           S++  +  G ++ +  C T    + +    L+  YA C                DL+S  
Sbjct: 336 SNLAALCEGQQVHQMICKTPSQFDTFVESTLMNLYAKCGEIRLARNVFDFSMEKDLISWN 395

Query: 606 GRLD---------EAFEMVKGMK---IKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653
           G +          EA  + K M+    KPN   +  LL AC     +  G    E + + 
Sbjct: 396 GIIAAYAHHGFGIEAMHLYKNMQENGYKPNDATYVGLLSACSHAGLVDEGLKIFESMVKD 455

Query: 654 EP--QKTSCYALLSNMHAEAGRWDEVEKV 680
                +   Y  L ++ + AGR ++ +++
Sbjct: 456 NSIVVRDEHYTCLVDLCSRAGRLEDAKRL 484



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 190/397 (47%), Gaps = 66/397 (16%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V +    I+ L ++G V++A  +F  M ++N V++N+MIS YA+N R+ +A  LF +MP 
Sbjct: 197 VMSWTTMISGLARNGSVDDAWVLFDAMPERNVVSWNAMISGYARNHRIEEALDLFTKMPI 256

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           R++ SWN MI G++ N  +K AR+LFD+M + ++ +W  M+  Y +  + E A +LF+ +
Sbjct: 257 RDVASWNIMITGFIQNKDLKSARQLFDEMPKRNVITWTTMMNGYLQCMQSEMALKLFNCM 316

Query: 135 ------PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK-NIVSWNSMLSGYTKNGEM 187
                 PN+          +  A +    +  +++   PS+ +    +++++ Y K GE+
Sbjct: 317 LVQGIQPNQVTFLGSLDACSNLAALCEGQQVHQMICKTPSQFDTFVESTLMNLYAKCGEI 376

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
            LA   F+   E+D++SWN                                +++ YA +G
Sbjct: 377 RLARNVFDFSMEKDLISWN-------------------------------GIIAAYAHHG 405

Query: 248 RMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-----SW 298
             +EA  L+  M       N   +  +++A    G ++E  ++F  M + N +      +
Sbjct: 406 FGIEAMHLYKNMQENGYKPNDATYVGLLSACSHAGLVDEGLKIFESMVKDNSIVVRDEHY 465

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ--TAMISGY----------VQNKRMDEAN 346
           T ++D   R  +L++A+RL+     K  ++   +A++ G           +  K + EA 
Sbjct: 466 TCLVDLCSRAGRLEDAKRLISWFKIKPTSSTVWSALLGGCNSHGNESIGDLAAKHLLEAE 525

Query: 347 QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
              D  GT+ ++C N+    YA  G+  EA  +  +M
Sbjct: 526 P--DNAGTYTLLC-NI----YASAGKWKEAAEIRSEM 555



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 17/168 (10%)

Query: 487 VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEE 546
           VN +   N  +   A  GR+ +A  LF      DV+SW +++A YA  G   EA  LF+ 
Sbjct: 38  VNHVQDSNWRVAELAAAGRVSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLFDR 97

Query: 547 MVMEGVAPDP----VTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLL 602
                  PD     VT+  +LS  +    VD    LFE M E   +      +  M++  
Sbjct: 98  -------PDARRNVVTWTALLSGYARARRVDEAEALFEGMAERNVVS-----WNTMLEAY 145

Query: 603 SRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL 650
           +  GR+++A  +   M ++ +AG W  LL       +++  R   E++
Sbjct: 146 TAVGRVEDASALFNRMPVR-DAGSWNILLCGLVRSGSLERARKMFERM 192


>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/590 (38%), Positives = 349/590 (59%), Gaps = 44/590 (7%)

Query: 150 YAKIGNYNEAKKLL---DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN 206
           Y  I +Y  AK  +   D     N+   N M++  +K+G +  A + F+ M E DV    
Sbjct: 43  YHSINDYRTAKISIPRKDFTVDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDV---- 98

Query: 207 LMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVV 265
                                      ++W T++SGY + G + EARRLFD++  + NVV
Sbjct: 99  ---------------------------ITWTTVISGYIKCGMIEEARRLFDRVDAKKNVV 131

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
            W AM+  Y++  +I +A +LF EMP +N VSW TMIDGY +  ++D A  L ++MP +N
Sbjct: 132 TWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERN 191

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
           + +   ++S   Q  R++EA ++FD++   DV+ W  MI G      +DEA++LF +M  
Sbjct: 192 VVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGL-----LDEALDLFERMPE 246

Query: 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV- 444
           +D+ +WNTMI G  Q   +  A K+F EM K+ N +SW  +I+G +Q     +ALKIF  
Sbjct: 247 RDLPSWNTMITGLIQNGDLRRARKLFNEMPKK-NVISWTTMITGCVQEGESEEALKIFSR 305

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG 504
           +++  G K +  T    L AC++LA L  G+Q+H +  K+ Y +  FV ++LI MY+KCG
Sbjct: 306 MLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCG 365

Query: 505 RIQNAELLFKDA--DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
            +  A  +F D      D++SWN +IA YA +G   EAI  F+EM   G  PD VT++G+
Sbjct: 366 ELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGL 425

Query: 563 LSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKP 622
           LSACSH GLV+ GLK F+ + +  +I    +HYAC++DL  RAGRL EAF  ++ ++ KP
Sbjct: 426 LSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKP 485

Query: 623 NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRV 682
           +A +WG LL  C +H N+K+G+ A +KL E+EP+    Y LLSN++A  G+W E  +VR+
Sbjct: 486 SARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRL 545

Query: 683 SMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            M+  G +KQPGCSWIEV N++H F+ GD    ++  I + L+ L ++++
Sbjct: 546 KMKDKGLKKQPGCSWIEVGNRVHVFVVGDKSHSQSKLIYSLLRDLHSKMK 595



 Score =  243 bits (619), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 161/520 (30%), Positives = 266/520 (51%), Gaps = 34/520 (6%)

Query: 62  VNDARKLFEQMPQR------NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMI 115
           +ND R     +P++      N+   N MI     + ++ EAR LFD+M  PD+ +W  +I
Sbjct: 46  INDYRTAKISIPRKDFTVDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVI 105

Query: 116 TCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN 175
           + Y + G +E+AR LFD +  K++   W AMV GY +    ++A+KL + MP+KN+VSWN
Sbjct: 106 SGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWN 165

Query: 176 SMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
           +M+ GY +NG +  A   FE M ER+VVSWN ++    +   ++ A + F ++PE++V+S
Sbjct: 166 TMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVIS 225

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
           W  M++G      + EA  LF++MP R++ +WN MI   +Q G +  A +LF EMP++N 
Sbjct: 226 WTAMIAGL-----LDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNV 280

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA--QTAMIS--GYVQN----KRMDEANQ 347
           +SWTTMI G V+  + +EA ++  +M   N A   Q   +S  G   N        + +Q
Sbjct: 281 ISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQ 340

Query: 348 IFDKIGTHD-VVCWNVMIKGYAQCGRMDEAINLFRQMVN--KDIVTWNTMIAGYAQIRQM 404
           I  K    D     + +I  Y++CG +  A  +F   +   +D+V+WN +IA YA     
Sbjct: 341 IISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYG 400

Query: 405 DDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK---KADHSTL 458
            +A+  F+EM   G + + V++  L+S         + LK F  + ++     + DH   
Sbjct: 401 KEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDH--Y 458

Query: 459 ACALSACAHLAALQLGRQ-IHHLAIK-SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
           AC +  C     L+     I  L  K S  V    +    +    K G+    +LL  + 
Sbjct: 459 ACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKKLL--EV 516

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
           +P +  ++  L   YA  G   EA ++  +M  +G+   P
Sbjct: 517 EPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQP 556



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 126/393 (32%), Positives = 229/393 (58%), Gaps = 22/393 (5%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           N    N MI+  +K+GR+ +AR+LF++M + ++++W ++I+GY+    ++EAR LFD++ 
Sbjct: 66  NVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVD 125

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
            + ++ +W  M+  Y R  ++  A +LF+ +PNK +   WN M+ GYA+ G  + A  L 
Sbjct: 126 AKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNK-NVVSWNTMIDGYAQNGRIDSAMYLF 184

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWK 223
           + MP +N+VSWN+++S   + G +  A + F+ M ERDV+SW  M+ G      LD A  
Sbjct: 185 EKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGL-----LDEALD 239

Query: 224 FFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEA 283
            F+++PE+++ SW TM++G  +NG +  AR+LF++MP +NV++W  MI   VQ G+ EEA
Sbjct: 240 LFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEA 299

Query: 284 ARLFIEMPERNPV-----SWTTMIDGYVRIAKLDEAR---RLLDQMPYKNIA-AQTAMIS 334
            ++F  M   N       ++ +++     +A L E +   +++ +  Y++     +A+I+
Sbjct: 300 LKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALIN 359

Query: 335 GYVQNKRMDEANQIFDK--IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDI 388
            Y +   +  A ++FD       D+V WN +I  YA  G   EAIN F++M       D 
Sbjct: 360 MYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDD 419

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
           VT+  +++  +    +++ +K F+E+ K R+ +
Sbjct: 420 VTYVGLLSACSHAGLVEEGLKYFDELVKDRSIL 452



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 182/342 (53%), Gaps = 53/342 (15%)

Query: 27  KSGRVEEAIKIFSQM-SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIA 85
           K G +EEA ++F ++ ++KN VT+ +M+  Y ++ +++DA KLF +MP +N+VSWN+MI 
Sbjct: 110 KCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMID 169

Query: 86  GYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNA 145
           GY  N ++  A  LF+KM   ++ SW  +++   + G +E+AR LFD +P + D   W A
Sbjct: 170 GYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPER-DVISWTA 228

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW 205
           M+AG       +EA  L + MP +++ SWN+M++G  +NG++  A K F  M +++V+SW
Sbjct: 229 MIAGL-----LDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISW 283

Query: 206 NLMLDGYVELDDLDSAWKFFQKI-------PEQ----NVVSWVTMLSG------------ 242
             M+ G V+  + + A K F ++       P Q    +V+   + L+G            
Sbjct: 284 TTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIIS 343

Query: 243 -----------------YARNGRMLEARRLFDQ--MPIRNVVAWNAMIAAYVQRGQIEEA 283
                            Y++ G +  AR++FD      R++V+WN +IAAY   G  +EA
Sbjct: 344 KTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEA 403

Query: 284 ARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQM 321
              F EM +     + V++  ++        ++E  +  D++
Sbjct: 404 INFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDEL 445



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 202/400 (50%), Gaps = 34/400 (8%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  I    ++GR++ A+ +F +M ++N V++N+++S  A+ GR+ +AR+LF++MP+
Sbjct: 161 VVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPE 220

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           R+++SW +MIAG L      EA +LF++M   DL SW  MIT   + G+L +AR+LF+ +
Sbjct: 221 RDVISWTAMIAGLLD-----EALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEM 275

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN-----------IVSWNSMLSGYTK 183
           P K++   W  M+ G  + G   EA K+   M S N           ++   S L+G  +
Sbjct: 276 P-KKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGE 334

Query: 184 NGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK--IPEQNVVSWVTMLS 241
             ++H         +   VVS   +++ Y +  +L +A K F      ++++VSW  +++
Sbjct: 335 GQQVHQIISKTVYQDSTFVVS--ALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIA 392

Query: 242 GYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPV- 296
            YA +G   EA   F +M         V +  +++A    G +EE  + F E+ +   + 
Sbjct: 393 AYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSIL 452

Query: 297 ----SWTTMIDGYVRIAKLDEARRLLDQMPYKNIA-AQTAMISG---YVQNKRMDEANQI 348
                +  ++D   R  +L EA   ++++  K  A    A+++G   +   K   +A + 
Sbjct: 453 VREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKK 512

Query: 349 FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
             ++   +   + ++   YA  G+  EA  +  +M +K +
Sbjct: 513 LLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGL 552


>gi|357118286|ref|XP_003560887.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Brachypodium distachyon]
          Length = 676

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/624 (35%), Positives = 353/624 (56%), Gaps = 55/624 (8%)

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY---VELDDLD 219
            DA+P++++V+WNS L+   +  ++  A  FF +M  RD VSWN +L  Y   +  + L 
Sbjct: 53  FDALPARSVVTWNSFLAALARGRDVAAARAFFASMPVRDAVSWNTLLAAYSRSLNSEHLA 112

Query: 220 SAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ 279
           +A + F ++P+++ V+W T+L  Y R G M+EA +LFD+MP RNV +WN M+  +   GQ
Sbjct: 113 AARRLFDEMPQRDAVTWNTLLGAYVRRGLMVEAEKLFDEMPQRNVASWNTMVTGFFSAGQ 172

Query: 280 IEEAARLFIEMPERNPVSWTTMIDGYV----------------RIAKLDEA--------- 314
           + +A  +F  MP ++  S  T++ G++                R+  +DEA         
Sbjct: 173 VNKALDMFDAMPVKDSASLGTLVSGFIKNGRLHEAEELLTKRLRVTDMDEAVDAYNTLIA 232

Query: 315 -----------RRLLDQMPY--------------KNIAAQTAMISGYVQNKRMDEANQIF 349
                      RRL D +P               +N+ +  +M++ Y++   +  A +IF
Sbjct: 233 AYGQVGRVSDARRLFDMIPRGQYQCKTNNMRVFARNVVSWNSMMTCYIRTGDVCSAREIF 292

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVK 409
           +++   D+V WN MI GY +   M+EA  LF +M + DIV+WN +I G+ Q   ++ A  
Sbjct: 293 NEMPDKDLVSWNTMIAGYTKVSDMEEAEKLFWEMPDPDIVSWNLIIRGFTQKGDVEHARG 352

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
            F+ M   R T+SWN +ISG+ QN  +  A+++F  M + G   D  T +  L+ACA L 
Sbjct: 353 FFDRM-PERGTISWNTMISGYEQNGHYDGAIELFTKMLEAGGTPDRHTFSSVLAACASLP 411

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
            L+LG Q+H L I+  ++ D    N+L+TMY++ G + +AE +FK     D++SWN+LI 
Sbjct: 412 MLRLGAQLHQL-IEKSFLPDTATSNALMTMYSRGGALTDAEAIFKQMPQKDLVSWNALIG 470

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE 589
           GY  +G ATEA++LFE+M    V P  +TFI +LSAC + GLV  G  +F+ M   Y+I 
Sbjct: 471 GYEHHGCATEALQLFEDMRSARVMPTHITFISLLSACGNAGLVSEGWMVFDTMIHEYSIA 530

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649
             +EHYA +++L+ R G+LD+A E++  M I P+  +WG  LGAC   +N  L  +A + 
Sbjct: 531 ARIEHYAALVNLIGRHGQLDDALEVINSMPIAPDRSVWGAFLGACTAKKNELLAHMAAKA 590

Query: 650 LSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLS 709
           LS+++P+ ++ Y L+ N+HA  GRW     VR  ME  G  K PG SWI++ +++H F+S
Sbjct: 591 LSKIDPESSAPYVLIHNLHAHEGRWGSASVVREEMEQQGIHKHPGYSWIDLHDKVHVFIS 650

Query: 710 GDPKQCRTAEICNTLKTLAAQIRN 733
           GD     T EI + LK      R+
Sbjct: 651 GDTSHPLTQEIFSVLKCFDMSSRD 674



 Score =  263 bits (672), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 168/561 (29%), Positives = 283/561 (50%), Gaps = 68/561 (12%)

Query: 38  FSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGY---LHNDKVK 94
           F  +  ++ VT+NS ++A A+   V  AR  F  MP R+ VSWN+++A Y   L+++ + 
Sbjct: 53  FDALPARSVVTWNSFLAALARGRDVAAARAFFASMPVRDAVSWNTLLAAYSRSLNSEHLA 112

Query: 95  EARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIG 154
            AR LFD+M + D  +W  ++  Y R+G + +A +LFD +P + + A WN MV G+   G
Sbjct: 113 AARRLFDEMPQRDAVTWNTLLGAYVRRGLMVEAEKLFDEMPQR-NVASWNTMVTGFFSAG 171

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEA------MEERDVVSWNLM 208
             N+A  + DAMP K+  S  +++SG+ KNG +H A +          M+E  V ++N +
Sbjct: 172 QVNKALDMFDAMPVKDSASLGTLVSGFIKNGRLHEAEELLTKRLRVTDMDEA-VDAYNTL 230

Query: 209 LDGYVELDDLDSAWKFFQKIPE--------------QNVVSWVTMLSGYARNGRMLEARR 254
           +  Y ++  +  A + F  IP               +NVVSW +M++ Y R G +  AR 
Sbjct: 231 IAAYGQVGRVSDARRLFDMIPRGQYQCKTNNMRVFARNVVSWNSMMTCYIRTGDVCSARE 290

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
           +F++MP +++V+WN MIA Y +   +EEA +LF EMP+ + VSW  +I G+ +   ++ A
Sbjct: 291 IFNEMPDKDLVSWNTMIAGYTKVSDMEEAEKLFWEMPDPDIVSWNLIIRGFTQKGDVEHA 350

Query: 315 RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI----GTHDVVCWNVMIKGYAQC 370
           R   D+MP +   +   MISGY QN   D A ++F K+    GT D   ++ ++   A  
Sbjct: 351 RGFFDRMPERGTISWNTMISGYEQNGHYDGAIELFTKMLEAGGTPDRHTFSSVLAACASL 410

Query: 371 GRMDEAINLFRQMVNK----DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNAL 426
             +     L  Q++ K    D  T N ++  Y++   + DA  IF++M  +++ VSWNAL
Sbjct: 411 PMLRLGAQL-HQLIEKSFLPDTATSNALMTMYSRGGALTDAEAIFKQM-PQKDLVSWNAL 468

Query: 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
           I G+  +    +AL++F  M        H T    LSAC +   +  G            
Sbjct: 469 IGGYEHHGCATEALQLFEDMRSARVMPTHITFISLLSACGNAGLVSEG------------ 516

Query: 487 VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEE 546
                V +++I  Y+   RI++               + +L+     +G   +A+++   
Sbjct: 517 ---WMVFDTMIHEYSIAARIEH---------------YAALVNLIGRHGQLDDALEVINS 558

Query: 547 MVMEGVAPDPVTFIGVLSACS 567
           M    +APD   +   L AC+
Sbjct: 559 M---PIAPDRSVWGAFLGACT 576



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 118/381 (30%), Positives = 213/381 (55%), Gaps = 25/381 (6%)

Query: 28  SGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGY 87
           S  +  A ++F +M Q++ VT+N+++ AY + G + +A KLF++MPQRN+ SWN+M+ G+
Sbjct: 108 SEHLAAARRLFDEMPQRDAVTWNTLLGAYVRRGLMVEAEKLFDEMPQRNVASWNTMVTGF 167

Query: 88  LHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD----LLPNKEDTACW 143
               +V +A ++FD M   D  S   +++ + + G L +A EL      +    E    +
Sbjct: 168 FSAGQVNKALDMFDAMPVKDSASLGTLVSGFIKNGRLHEAEELLTKRLRVTDMDEAVDAY 227

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMP--------------SKNIVSWNSMLSGYTKNGEMHL 189
           N ++A Y ++G  ++A++L D +P              ++N+VSWNSM++ Y + G++  
Sbjct: 228 NTLIAAYGQVGRVSDARRLFDMIPRGQYQCKTNNMRVFARNVVSWNSMMTCYIRTGDVCS 287

Query: 190 ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRM 249
           A + F  M ++D+VSWN M+ GY ++ D++ A K F ++P+ ++VSW  ++ G+ + G +
Sbjct: 288 AREIFNEMPDKDLVSWNTMIAGYTKVSDMEEAEKLFWEMPDPDIVSWNLIIRGFTQKGDV 347

Query: 250 LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PERNPVSWTTMID 303
             AR  FD+MP R  ++WN MI+ Y Q G  + A  LF +M      P+R+  S      
Sbjct: 348 EHARGFFDRMPERGTISWNTMISGYEQNGHYDGAIELFTKMLEAGGTPDRHTFSSVLAAC 407

Query: 304 GYVRIAKLD-EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNV 362
             + + +L  +  +L+++    + A   A+++ Y +   + +A  IF ++   D+V WN 
Sbjct: 408 ASLPMLRLGAQLHQLIEKSFLPDTATSNALMTMYSRGGALTDAEAIFKQMPQKDLVSWNA 467

Query: 363 MIKGYAQCGRMDEAINLFRQM 383
           +I GY   G   EA+ LF  M
Sbjct: 468 LIGGYEHHGCATEALQLFEDM 488



 Score =  204 bits (519), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 122/438 (27%), Positives = 232/438 (52%), Gaps = 40/438 (9%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           + G + EA K+F +M Q+N  ++N+M++ +   G+VN A  +F+ MP ++  S  ++++G
Sbjct: 138 RRGLMVEAEKLFDEMPQRNVASWNTMVTGFFSAGQVNKALDMFDAMPVKDSASLGTLVSG 197

Query: 87  YLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARELFDLLPNKE--- 138
           ++ N ++ EA EL  K  R       + ++  +I  Y + G +  AR LFD++P  +   
Sbjct: 198 FIKNGRLHEAEELLTKRLRVTDMDEAVDAYNTLIAAYGQVGRVSDARRLFDMIPRGQYQC 257

Query: 139 ----------DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
                     +   WN+M+  Y + G+   A+++ + MP K++VSWN+M++GYTK  +M 
Sbjct: 258 KTNNMRVFARNVVSWNSMMTCYIRTGDVCSAREIFNEMPDKDLVSWNTMIAGYTKVSDME 317

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGR 248
            A K F  M + D+VSWNL++ G+ +  D++ A  FF ++PE+  +SW TM+SGY +NG 
Sbjct: 318 EAEKLFWEMPDPDIVSWNLIIRGFTQKGDVEHARGFFDRMPERGTISWNTMISGYEQNGH 377

Query: 249 MLEARRLFDQM------PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWTT 300
              A  LF +M      P R+   +++++AA      +   A+L  ++ E++  P + T+
Sbjct: 378 YDGAIELFTKMLEAGGTPDRHT--FSSVLAACASLPMLRLGAQLH-QLIEKSFLPDTATS 434

Query: 301 --MIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV 358
             ++  Y R   L +A  +  QMP K++ +  A+I GY  +    EA Q+F+ + +  V+
Sbjct: 435 NALMTMYSRGGALTDAEAIFKQMPQKDLVSWNALIGGYEHHGCATEALQLFEDMRSARVM 494

Query: 359 CWNV----MIKGYAQCGRMDEAINLFRQMVNK-----DIVTWNTMIAGYAQIRQMDDAVK 409
             ++    ++      G + E   +F  M+++      I  +  ++    +  Q+DDA++
Sbjct: 495 PTHITFISLLSACGNAGLVSEGWMVFDTMIHEYSIAARIEHYAALVNLIGRHGQLDDALE 554

Query: 410 IFEEMGKRRNTVSWNALI 427
           +   M    +   W A +
Sbjct: 555 VINSMPIAPDRSVWGAFL 572



 Score =  161 bits (407), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 181/334 (54%), Gaps = 31/334 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQ--------------KNTVTYNSMISAYAKNGRVND 64
           N  I   G+ GRV +A ++F  + +              +N V++NSM++ Y + G V  
Sbjct: 228 NTLIAAYGQVGRVSDARRLFDMIPRGQYQCKTNNMRVFARNVVSWNSMMTCYIRTGDVCS 287

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGEL 124
           AR++F +MP ++LVSWN+MIAGY     ++EA +LF +M  PD+ SW L+I  +T+KG++
Sbjct: 288 AREIFNEMPDKDLVSWNTMIAGYTKVSDMEEAEKLFWEMPDPDIVSWNLIIRGFTQKGDV 347

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA----KKLLDAMPSKNIVSWNSMLSG 180
           E AR  FD +P +  T  WN M++GY + G+Y+ A     K+L+A  + +  +++S+L+ 
Sbjct: 348 EHARGFFDRMPER-GTISWNTMISGYEQNGHYDGAIELFTKMLEAGGTPDRHTFSSVLAA 406

Query: 181 YTKNGEMHLASKFFEAMEER---DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV 237
                 + L ++  + +E+    D  + N ++  Y     L  A   F+++P++++VSW 
Sbjct: 407 CASLPMLRLGAQLHQLIEKSFLPDTATSNALMTMYSRGGALTDAEAIFKQMPQKDLVSWN 466

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPER 293
            ++ GY  +G   EA +LF+ M    V    + + ++++A    G + E   +F  M   
Sbjct: 467 ALIGGYEHHGCATEALQLFEDMRSARVMPTHITFISLLSACGNAGLVSEGWMVFDTMIHE 526

Query: 294 NPVS-----WTTMIDGYVRIAKLDEARRLLDQMP 322
             ++     +  +++   R  +LD+A  +++ MP
Sbjct: 527 YSIAARIEHYAALVNLIGRHGQLDDALEVINSMP 560



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 146/292 (50%), Gaps = 15/292 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  +T   ++G V  A +IF++M  K+ V++N+MI+ Y K   + +A KLF +MP 
Sbjct: 269 VVSWNSMMTCYIRTGDVCSAREIFNEMPDKDLVSWNTMIAGYTKVSDMEEAEKLFWEMPD 328

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
            ++VSWN +I G+     V+ AR  FD+M      SW  MI+ Y + G  + A ELF  +
Sbjct: 329 PDIVSWNLIIRGFTQKGDVEHARGFFDRMPERGTISWNTMISGYEQNGHYDGAIELFTKM 388

Query: 135 ------PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
                 P++   +   A  A    +    +  +L++     +  + N++++ Y++ G + 
Sbjct: 389 LEAGGTPDRHTFSSVLAACASLPMLRLGAQLHQLIEKSFLPDTATSNALMTMYSRGGALT 448

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYA 244
            A   F+ M ++D+VSWN ++ GY        A + F+ +    V    ++++++LS   
Sbjct: 449 DAEAIFKQMPQKDLVSWNALIGGYEHHGCATEALQLFEDMRSARVMPTHITFISLLSACG 508

Query: 245 RNGRMLEARRLFDQMPIRNVVA-----WNAMIAAYVQRGQIEEAARLFIEMP 291
             G + E   +FD M     +A     + A++    + GQ+++A  +   MP
Sbjct: 509 NAGLVSEGWMVFDTMIHEYSIAARIEHYAALVNLIGRHGQLDDALEVINSMP 560


>gi|116310106|emb|CAH67125.1| H0315E07.3 [Oryza sativa Indica Group]
 gi|222628896|gb|EEE61028.1| hypothetical protein OsJ_14863 [Oryza sativa Japonica Group]
          Length = 655

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/589 (38%), Positives = 343/589 (58%), Gaps = 5/589 (0%)

Query: 143 WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV 202
           WN MV+G  +     EA+K+ DAMP +N VSW ++L+GY + G +  A + F  + +R+V
Sbjct: 68  WNCMVSGLIRNRMLAEARKVFDAMPVRNSVSWAALLTGYARCGRVAEARELFNRIPDRNV 127

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR 262
           VSWN M+ GY     +  A + F  +P ++ VSW+TM+SGY +   + EAR LFD MP  
Sbjct: 128 VSWNAMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSP 187

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
                NA+++ YV+ G +  A  LF +M  RNPVSW  MI GY R   +  A+RL D+MP
Sbjct: 188 PTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMP 247

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
            K++ ++TA++ GY+QN  +D A ++F  +   D V WN M+ G+ +  R+D+A+ LF +
Sbjct: 248 EKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSE 307

Query: 383 MVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI 442
           M ++D ++WN ++ GY Q   MD A   F      ++ +SWN LISG+ ++E    AL +
Sbjct: 308 MPDRDQISWNAILQGYVQQGDMDSANAWFRR-APNKDAISWNTLISGY-KDE---GALSL 362

Query: 443 FVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
              M + G K D +TL+  +S CA L +L  G+ +H  AIK+G+ +D  V +SLI+MY+K
Sbjct: 363 LSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSK 422

Query: 503 CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
           CG I  A  +F+     D ++WN++IA YA +G A EA+K+F+ M   G  PD  TF+ +
Sbjct: 423 CGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSI 482

Query: 563 LSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKP 622
           LSAC+H G +  G   F  M E + + P  +HY+CM+DLL R+G + +A++  + +    
Sbjct: 483 LSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDLLGRSGFIHQAYDFTRRIPSDH 542

Query: 623 NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRV 682
               W TL   C  H  I+LG I    + +  P     Y LLSN++A    W     VR 
Sbjct: 543 RTTAWETLFSVCNSHGEIQLGEIIARNVLKARPSDGGMYTLLSNIYAAKEMWSSAASVRG 602

Query: 683 SMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
            M+  G +K+ GCSWIE+K ++ TF S D       +IC  + +++  I
Sbjct: 603 FMKERGLKKETGCSWIELKGEVVTFSSNDSNHPLIEQICQEVDSISVMI 651



 Score =  285 bits (730), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 166/501 (33%), Positives = 268/501 (53%), Gaps = 80/501 (15%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  N  I +  ++GRV  A ++F +MS++N  T+N M+S   +N  + +ARK+F+ MP 
Sbjct: 34  VFQSNTAINEHFRAGRVAAARRVFDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMPV 93

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN VSW +++ GY    +V EARELF+++   ++ SW  M++ Y R G +++ARELFD++
Sbjct: 94  RNSVSWAALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFDMM 153

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS-------------------------- 168
           P ++D + W  M++GY K  +  EA++L D+MPS                          
Sbjct: 154 PWRDDVS-WLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYMRAAEVLF 212

Query: 169 -----KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWK 223
                +N VSWN M++GY + G M +A + F+ M E+DV+S   ++ GY++   +D+AWK
Sbjct: 213 GQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWK 272

Query: 224 FFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEA 283
            F+ +P ++ V+W TM+ G+ RN R+ +A +LF +MP R+ ++WNA++  YVQ+G ++ A
Sbjct: 273 VFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWNAILQGYVQQGDMDSA 332

Query: 284 ARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ----- 338
              F   P ++ +SW T+I GY    K + A  LL +M    +    A +S  +      
Sbjct: 333 NAWFRRAPNKDAISWNTLISGY----KDEGALSLLSEMIRGGLKPDQATLSVVISICASL 388

Query: 339 ----NKRMDEANQIFDKIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNT 393
                 +M     I  K G  HD +  + +I  Y++CG + EA  +F  ++ +D VTWN 
Sbjct: 389 VSLGCGKMVHLWAI--KTGFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNA 446

Query: 394 MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA 453
           MIA YA     D+A+K+F+                                +MT+ G + 
Sbjct: 447 MIATYAYHGLADEALKVFD--------------------------------MMTKAGFRP 474

Query: 454 DHSTLACALSACAHLAALQLG 474
           DH+T    LSACAH   L  G
Sbjct: 475 DHATFLSILSACAHKGYLYEG 495


>gi|51535392|dbj|BAD37262.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|51535558|dbj|BAD37476.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 908

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/635 (36%), Positives = 358/635 (56%), Gaps = 54/635 (8%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N  +A   + G Y  A++L DA+P++++V+WNS+L+G  +  +   A +FF+AM  RD V
Sbjct: 40  NRSLAALLRAGRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAMPVRDAV 99

Query: 204 SWNLMLDGY---VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
           SWN +L  Y      D L +A + F ++P+++VV+W T+L  YAR G M EARRLFD+MP
Sbjct: 100 SWNTLLAAYSASPHPDHLAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEMP 159

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
            RN  +WN M+  +   GQ+ +A  +F  MP ++  S +TM+ G+ +   L EA  LL +
Sbjct: 160 QRNAASWNTMVTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAEELLTK 219

Query: 321 MPY-----KNIAAQTAMISGYVQNKRMDEANQIFDKIGT--------------HDVVCWN 361
                   K + A   +I  Y Q  R  +A ++FD I                 +VV WN
Sbjct: 220 RLSVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWN 279

Query: 362 VMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMG------ 415
            M+  Y + G +  A  LF +M +KD+V+WNTMI+GY Q   M ++ K+F EM       
Sbjct: 280 SMMICYIKAGDVCSARALFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEMPDPDTVS 339

Query: 416 ------------------------KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
                                     R T+SWN +ISG+ +N  ++ ++K+F  M + G+
Sbjct: 340 WNLIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGE 399

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL 511
             D  T +  L+ACA +  L LG QIH L  KS +V D  + N+LITMY++CG + +AE 
Sbjct: 400 IPDRHTFSSVLAACASIPMLGLGAQIHQLVEKS-FVPDTAISNALITMYSRCGALNDAEA 458

Query: 512 LFKDADPV-DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
           +FK      D++SWN+LI  Y  +G AT+A++LF+EM    V P  +TF+ +LSAC + G
Sbjct: 459 IFKQMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAG 518

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
           LV  G  +F+ M   Y I   +EHYA +++L+ R G+LD+A E++  M + P+  +WG  
Sbjct: 519 LVSEGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQLDDALEVINSMPMAPDRSVWGAF 578

Query: 631 LGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQ 690
           LGAC   +N  L ++A ++LS + P  ++ Y L+ N+HA  G+W     VR  ME  G  
Sbjct: 579 LGACTAKKNEPLAQMAAKELSTINPDSSAPYVLIHNLHAHEGKWGSAAVVREEMERQGIY 638

Query: 691 KQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLK 725
           KQPG SWI+++ ++H F+SGD       EI + L+
Sbjct: 639 KQPGYSWIDLEGKMHVFISGDTWHPNAQEIFSVLE 673



 Score =  261 bits (667), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 168/583 (28%), Positives = 292/583 (50%), Gaps = 65/583 (11%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V   N+ +  L ++GR   A ++F  +  ++ VT+NS+++  A+      AR+ F+ MP 
Sbjct: 36  VMRHNRSLAALLRAGRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAMPV 95

Query: 75  RNLVSWNSMIAGY---LHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           R+ VSWN+++A Y    H D +  AR LFD+M + D+ +W  ++  Y R+G +++AR LF
Sbjct: 96  RDAVSWNTLLAAYSASPHPDHLAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLF 155

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
           D +P + + A WN MV G+   G   +A  + DAMP+K+  S ++M+SG+TKNG +H A 
Sbjct: 156 DEMPQR-NAASWNTMVTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAE 214

Query: 192 KFFEAM-----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIP--------------EQN 232
           +           ++ V ++N ++  Y +      A + F  IP              E+N
Sbjct: 215 ELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERN 274

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE 292
           VVSW +M+  Y + G +  AR LF++MP +++V+WN MI+ Y Q   ++E+ +LF EMP+
Sbjct: 275 VVSWNSMMICYIKAGDVCSARALFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEMPD 334

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK- 351
            + VSW  +I G+++  + + AR   D+MP +   +   MISGY +N     + ++F K 
Sbjct: 335 PDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKM 394

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINL---FRQMVNK----DIVTWNTMIAGYAQIRQM 404
           +   ++   +      A C  +   + L     Q+V K    D    N +I  Y++   +
Sbjct: 395 LEVGEIPDRHTFSSVLAACASI-PMLGLGAQIHQLVEKSFVPDTAISNALITMYSRCGAL 453

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSA 464
           +DA  IF++M  +++ VSWNALI  +  +     AL++F  M +      H T    LSA
Sbjct: 454 NDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSA 513

Query: 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
           C +   +  GR                V ++++  Y    RI++               +
Sbjct: 514 CVNAGLVSEGR---------------MVFDTMVHEYGIVARIEH---------------Y 543

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
            +L+     +G   +A+++   M M   APD   +   L AC+
Sbjct: 544 AALVNLIGRHGQLDDALEVINSMPM---APDRSVWGAFLGACT 583


>gi|297605437|ref|NP_001057211.2| Os06g0228900 [Oryza sativa Japonica Group]
 gi|255676854|dbj|BAF19125.2| Os06g0228900 [Oryza sativa Japonica Group]
          Length = 695

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/635 (36%), Positives = 358/635 (56%), Gaps = 54/635 (8%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N  +A   + G Y  A++L DA+P++++V+WNS+L+G  +  +   A +FF+AM  RD V
Sbjct: 4   NRSLAALLRAGRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAMPVRDAV 63

Query: 204 SWNLMLDGYV---ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
           SWN +L  Y      D L +A + F ++P+++VV+W T+L  YAR G M EARRLFD+MP
Sbjct: 64  SWNTLLAAYSASPHPDHLAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEMP 123

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
            RN  +WN M+  +   GQ+ +A  +F  MP ++  S +TM+ G+ +   L EA  LL +
Sbjct: 124 QRNAASWNTMVTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAEELLTK 183

Query: 321 MPY-----KNIAAQTAMISGYVQNKRMDEANQIFDKIGT--------------HDVVCWN 361
                   K + A   +I  Y Q  R  +A ++FD I                 +VV WN
Sbjct: 184 RLSVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWN 243

Query: 362 VMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMG------ 415
            M+  Y + G +  A  LF +M +KD+V+WNTMI+GY Q   M ++ K+F EM       
Sbjct: 244 SMMICYIKAGDVCSARALFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEMPDPDTVS 303

Query: 416 ------------------------KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
                                     R T+SWN +ISG+ +N  ++ ++K+F  M + G+
Sbjct: 304 WNLIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGE 363

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL 511
             D  T +  L+ACA +  L LG QIH L  KS +V D  + N+LITMY++CG + +AE 
Sbjct: 364 IPDRHTFSSVLAACASIPMLGLGAQIHQLVEKS-FVPDTAISNALITMYSRCGALNDAEA 422

Query: 512 LFKDADPV-DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
           +FK      D++SWN+LI  Y  +G AT+A++LF+EM    V P  +TF+ +LSAC + G
Sbjct: 423 IFKQMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAG 482

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
           LV  G  +F+ M   Y I   +EHYA +++L+ R G+LD+A E++  M + P+  +WG  
Sbjct: 483 LVSEGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQLDDALEVINSMPMAPDRSVWGAF 542

Query: 631 LGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQ 690
           LGAC   +N  L ++A ++LS + P  ++ Y L+ N+HA  G+W     VR  ME  G  
Sbjct: 543 LGACTAKKNEPLAQMAAKELSTINPDSSAPYVLIHNLHAHEGKWGSAAVVREEMERQGIY 602

Query: 691 KQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLK 725
           KQPG SWI+++ ++H F+SGD       EI + L+
Sbjct: 603 KQPGYSWIDLEGKMHVFISGDTWHPNAQEIFSVLE 637



 Score =  260 bits (665), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 167/580 (28%), Positives = 291/580 (50%), Gaps = 65/580 (11%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
            N+ +  L ++GR   A ++F  +  ++ VT+NS+++  A+      AR+ F+ MP R+ 
Sbjct: 3   HNRSLAALLRAGRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAMPVRDA 62

Query: 78  VSWNSMIAGY---LHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           VSWN+++A Y    H D +  AR LFD+M + D+ +W  ++  Y R+G +++AR LFD +
Sbjct: 63  VSWNTLLAAYSASPHPDHLAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEM 122

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P + + A WN MV G+   G   +A  + DAMP+K+  S ++M+SG+TKNG +H A +  
Sbjct: 123 PQR-NAASWNTMVTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAEELL 181

Query: 195 EAM-----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIP--------------EQNVVS 235
                    ++ V ++N ++  Y +      A + F  IP              E+NVVS
Sbjct: 182 TKRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVS 241

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
           W +M+  Y + G +  AR LF++MP +++V+WN MI+ Y Q   ++E+ +LF EMP+ + 
Sbjct: 242 WNSMMICYIKAGDVCSARALFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEMPDPDT 301

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK-IGT 354
           VSW  +I G+++  + + AR   D+MP +   +   MISGY +N     + ++F K +  
Sbjct: 302 VSWNLIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEV 361

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINL---FRQMVNK----DIVTWNTMIAGYAQIRQMDDA 407
            ++   +      A C  +   + L     Q+V K    D    N +I  Y++   ++DA
Sbjct: 362 GEIPDRHTFSSVLAACASI-PMLGLGAQIHQLVEKSFVPDTAISNALITMYSRCGALNDA 420

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
             IF++M  +++ VSWNALI  +  +     AL++F  M +      H T    LSAC +
Sbjct: 421 EAIFKQMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACVN 480

Query: 468 LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSL 527
              +  GR                V ++++  Y    RI++               + +L
Sbjct: 481 AGLVSEGR---------------MVFDTMVHEYGIVARIEH---------------YAAL 510

Query: 528 IAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
           +     +G   +A+++   M M   APD   +   L AC+
Sbjct: 511 VNLIGRHGQLDDALEVINSMPM---APDRSVWGAFLGACT 547



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/481 (25%), Positives = 239/481 (49%), Gaps = 60/481 (12%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V   N  +    + G ++EA ++F +M Q+N  ++N+M++ +   G+V  A  +F+ MP 
Sbjct: 96  VVTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFFAAGQVVKALDVFDAMPA 155

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARE 129
           ++  S ++M++G+  N  + EA EL  K          + ++  +I  Y + G    A+ 
Sbjct: 156 KDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAKR 215

Query: 130 LFDLLPN-------------KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNS 176
           LFD++P              + +   WN+M+  Y K G+   A+ L + MP K++VSWN+
Sbjct: 216 LFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLVSWNT 275

Query: 177 MLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSW 236
           M+SGYT+  +M  + K F  M + D VSWNL++ G+++  + + A  FF ++PE+  +SW
Sbjct: 276 MISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGTISW 335

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
            TM+SGY +NG  + + +LF +M               ++ G+I          P+R+  
Sbjct: 336 NTMISGYEKNGNYISSVKLFSKM---------------LEVGEI----------PDRH-- 368

Query: 297 SWTTMIDGYVRIAKLD---EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
           ++++++     I  L    +  +L+++    + A   A+I+ Y +   +++A  IF ++ 
Sbjct: 369 TFSSVLAACASIPMLGLGAQIHQLVEKSFVPDTAISNALITMYSRCGALNDAEAIFKQMH 428

Query: 354 T-HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI----VTWNTMIAGYAQIRQMDDAV 408
           T  D+V WN +I  Y   GR  +A+ LF++M    +    +T+ ++++       + +  
Sbjct: 429 TKKDLVSWNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGR 488

Query: 409 KIFEEMGKRRNTVS----WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSA 464
            +F+ M      V+    + AL++   ++    DAL++   M       D S     L A
Sbjct: 489 MVFDTMVHEYGIVARIEHYAALVNLIGRHGQLDDALEVINSMPM---APDRSVWGAFLGA 545

Query: 465 C 465
           C
Sbjct: 546 C 546


>gi|125548358|gb|EAY94180.1| hypothetical protein OsI_15952 [Oryza sativa Indica Group]
          Length = 655

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/589 (37%), Positives = 345/589 (58%), Gaps = 5/589 (0%)

Query: 143 WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV 202
           WN MV+G  +     EA+K+ DAMP +N VSW ++L+GY + G +  A + F  + +R+V
Sbjct: 68  WNCMVSGLIRNRMLAEARKVFDAMPVRNSVSWAALLTGYARCGRVAEARELFNRIPDRNV 127

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR 262
           VSWN M+ GY     +  A + F  +P ++ VSW+TM+SGY +   + EAR LFD MP  
Sbjct: 128 VSWNAMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSP 187

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
                NA+++ YV+ G +  A  LF +M  RNPVSW  MI GY R   +  A+RL D+MP
Sbjct: 188 PTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMP 247

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
            K++ ++TA++ GY+QN  +D A ++F  +   D V WN M+ G+ +  R+D+A+ LF +
Sbjct: 248 EKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSE 307

Query: 383 MVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI 442
           M ++D ++W+ ++ GY Q   MD A  ++      ++ +SWN LISG+ ++E    AL +
Sbjct: 308 MPDRDQISWHAILQGYVQQGDMDSA-NVWFPRAPNKDAISWNTLISGY-KDE---GALSL 362

Query: 443 FVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
              M + G K D +TL+  +S CA L +L  G+ +H  AIK+G+ +D  V +SLI+MY+K
Sbjct: 363 LSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSK 422

Query: 503 CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
           CG I  A  +F+     D ++WN++IA YA +G A EA+K+F+ M   G  PD  TF+ +
Sbjct: 423 CGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSI 482

Query: 563 LSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKP 622
           LSAC+H G +  G   F  M E + + P  +HY+CM+DLL R+G + +A++  + +    
Sbjct: 483 LSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDLLGRSGFIHQAYDFTRRIPSDH 542

Query: 623 NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRV 682
               W TL  AC  H  I+LG I    + +  P     Y LLSN++A    W     VR 
Sbjct: 543 RTTAWETLFSACNSHGEIQLGEIIARNVLKARPSDGGMYTLLSNIYAAKEMWSSAASVRG 602

Query: 683 SMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
            M+  G +K+ GCSWIE+K ++ TF S D       +IC  + +++  I
Sbjct: 603 FMKERGLKKETGCSWIELKGEVVTFSSNDSNHPLIEQICQEVDSISVMI 651



 Score =  285 bits (728), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 161/495 (32%), Positives = 263/495 (53%), Gaps = 68/495 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  N  I +  ++GRV  A ++F +MS++N  T+N M+S   +N  + +ARK+F+ MP 
Sbjct: 34  VFQSNTAINEHFRAGRVAAARRVFDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMPV 93

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN VSW +++ GY    +V EARELF+++   ++ SW  M++ Y R G +++ARELFD++
Sbjct: 94  RNSVSWAALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFDMM 153

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P ++D + W  M++GY K  +  EA++L D+MPS      N++LSGY + G M  A   F
Sbjct: 154 PWRDDVS-WLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYMRAAEVLF 212

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
             M+ R+ VSWN+M+ GY     +  A + F ++PE++V+S   ++ GY +NG +  A +
Sbjct: 213 GQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWK 272

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
           +F  MP R+ VAWN M+  +V+  ++++A +LF EMP+R+ +SW  ++ GYV+   +D A
Sbjct: 273 VFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWHAILQGYVQQGDMDSA 332

Query: 315 RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD------------------------ 350
                + P K+  +   +ISGY     +   +++                          
Sbjct: 333 NVWFPRAPNKDAISWNTLISGYKDEGALSLLSEMIRGGLKPDQATLSVVISICASLVSLG 392

Query: 351 ----------KIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYA 399
                     K G  HD +  + +I  Y++CG + EA  +F  ++ +D VTWN MIA YA
Sbjct: 393 CGKMVHLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYA 452

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
                D+A+K+F+                                +MT+ G + DH+T  
Sbjct: 453 YHGLADEALKVFD--------------------------------MMTKAGFRPDHATFL 480

Query: 460 CALSACAHLAALQLG 474
             LSACAH   L  G
Sbjct: 481 SILSACAHKGYLYEG 495


>gi|255559617|ref|XP_002520828.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539959|gb|EEF41537.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 656

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/619 (35%), Positives = 357/619 (57%), Gaps = 37/619 (5%)

Query: 103 MFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKL 162
           +F  D +   + I+    +G++++AR++FD +P + D   + +M+  Y K  +  +A+ L
Sbjct: 46  VFASDTYESNVKISNLGLRGKVKEARKVFDEMP-RRDAVSYASMITVYLKNKDLPQAEIL 104

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAW 222
              +P +N+V+ ++M+SGY + G +  A + F+ M ER+V SW  ++ GY ++ ++D A 
Sbjct: 105 FREIPERNVVADSAMISGYVRAGRLDKARQVFDQMVERNVFSWTSLVSGYFKIGNVDEAM 164

Query: 223 KFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEE 282
           + F ++PE+NVVSW T + GYA+NG + EAR +F+QMP +N++AW AM+ +YV+  +I+E
Sbjct: 165 RLFNQMPEKNVVSWTTAVVGYAQNGFIDEARDIFNQMPEKNIIAWTAMVKSYVENDEIDE 224

Query: 283 AARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRM 342
           A  LF +MP+RN  SW  MI G +   +L+EA +L + MP +N  + T +++G  +N  M
Sbjct: 225 AFELFYQMPQRNLYSWNIMISGCINANRLNEAIQLFNSMPQRNEVSWTTLVTGLARNGMM 284

Query: 343 DEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIR 402
           + A + FD + T D+  WN MI  Y   G M EA NLF  M  K+IV+WN +I GYA   
Sbjct: 285 ELARKYFDHMPTKDIAAWNAMITAYVDQGSMAEASNLFNLMPEKNIVSWNALIDGYA--- 341

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
                                        +N    ++L+  +LM +   K + +T+   L
Sbjct: 342 -----------------------------RNGPESNSLRYLILMLRSNFKPNETTITSVL 372

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
           +AC  +  L    Q H L I  G+  D  + N L+T Y++CG + +A  +F   +  D++
Sbjct: 373 TACDSILELM---QAHGLVIHLGFEQDKVLANGLVTTYSRCGDVLSARFIFDQLEIKDIV 429

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           SW ++I  Y+ +G    A+++F  M+  G  PD +TF+G+LSACSH GLV  G  LF+ M
Sbjct: 430 SWTAMILAYSNHGCGPHALQVFARMLRSGAKPDGITFVGLLSACSHAGLVKKGQMLFDSM 489

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKP-NAGIWGTLLGACRMHQNIK 641
           +  Y +EP  EHY+C++D+L RAG +++A ++V  M     +  + G LLGACR+H+++ 
Sbjct: 490 SCAYGVEPRAEHYSCLVDILGRAGEMNKAMKVVSEMPPHECDGAVLGALLGACRLHKDVG 549

Query: 642 LGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVK 701
           L     EKL E EP  +  Y LL+N +A  G+W+E  +VR  M+    +K+PG S IEVK
Sbjct: 550 LANHIGEKLIEKEPTSSGSYVLLANAYAACGKWNEFAEVRKEMKERNVKKEPGFSQIEVK 609

Query: 702 NQIHTFLSGDPKQCRTAEI 720
            + H F   D    +  EI
Sbjct: 610 GKSHVFFVRDRSHPQLEEI 628



 Score =  299 bits (765), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 160/471 (33%), Positives = 260/471 (55%), Gaps = 38/471 (8%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
            S  +  N KI+ LG  G+V+EA K+F +M +++ V+Y SMI+ Y KN  +  A  LF +
Sbjct: 48  ASDTYESNVKISNLGLRGKVKEARKVFDEMPRRDAVSYASMITVYLKNKDLPQAEILFRE 107

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           +P+RN+V+ ++MI+GY+   ++ +AR++FD+M   ++FSW  +++ Y + G +++A  LF
Sbjct: 108 IPERNVVADSAMISGYVRAGRLDKARQVFDQMVERNVFSWTSLVSGYFKIGNVDEAMRLF 167

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
           + +P K +   W   V GYA+ G  +EA+ + + MP KNI++W +M+  Y +N E+  A 
Sbjct: 168 NQMPEK-NVVSWTTAVVGYAQNGFIDEARDIFNQMPEKNIIAWTAMVKSYVENDEIDEAF 226

Query: 192 KFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLE 251
           + F  M +R++ SWN+M+ G +  + L+ A + F  +P++N VSW T+++G ARNG M  
Sbjct: 227 ELFYQMPQRNLYSWNIMISGCINANRLNEAIQLFNSMPQRNEVSWTTLVTGLARNGMMEL 286

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKL 311
           AR+ FD MP +++ AWNAMI AYV +G + EA+ LF  MPE+N VSW  +IDGY R    
Sbjct: 287 ARKYFDHMPTKDIAAWNAMITAYVDQGSMAEASNLFNLMPEKNIVSWNALIDGYARNGPE 346

Query: 312 DEARRLLDQMPYKNIAAQTAMISGYVQN----KRMDEANQIFDKIG-THDVVCWNVMIKG 366
             + R L  M   N       I+  +        + +A+ +   +G   D V  N ++  
Sbjct: 347 SNSLRYLILMLRSNFKPNETTITSVLTACDSILELMQAHGLVIHLGFEQDKVLANGLVTT 406

Query: 367 YAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNAL 426
           Y++CG +  A  +F Q+  KDIV+W  MI  Y+               G           
Sbjct: 407 YSRCGDVLSARFIFDQLEIKDIVSWTAMILAYSN-----------HGCGPH--------- 446

Query: 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI 477
                       AL++F  M + G K D  T    LSAC+H   ++ G+ +
Sbjct: 447 ------------ALQVFARMLRSGAKPDGITFVGLLSACSHAGLVKKGQML 485


>gi|224137724|ref|XP_002322628.1| predicted protein [Populus trichocarpa]
 gi|222867258|gb|EEF04389.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/540 (39%), Positives = 345/540 (63%), Gaps = 5/540 (0%)

Query: 197 MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPE-QNVVSWVTMLSGYARNGRMLEARRL 255
           M ERDVV+W  ++ GY++   +  A + F ++   ++VV+W  MLSGY R  R+ EA RL
Sbjct: 1   MHERDVVTWTAVISGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERL 60

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR 315
           F+ MP++NVV+WN MI  Y +  ++++A  +F  M ERN VSW  +I   V+  +++EAR
Sbjct: 61  FEVMPVKNVVSWNTMIDGYGKNREVDKAIEVFERMHERNMVSWNAVIAALVQCGRVEEAR 120

Query: 316 RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
           R  D+MP +++ + T M+ G  ++ R+DEA ++FD++   +VV WN M+ GYA+  R+DE
Sbjct: 121 RRFDEMPKRDVISWTTMVMGLARSGRVDEARKVFDRMPERNVVSWNAMVTGYAKNMRLDE 180

Query: 376 AINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEF 435
           A +LF +M  +++ +WNTMI G+ Q  ++  A K+F EM ++ N VSW  +I+G++Q   
Sbjct: 181 AFDLFERMPERNLSSWNTMITGFIQNGELAWARKVFNEMPEK-NVVSWTTMITGYVQEGE 239

Query: 436 HLDALKIFVLMTQEG-KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN 494
              ALK+FV M ++G  + +  T    L AC+ +A L  G+Q+H L  KS Y +  FV +
Sbjct: 240 SESALKVFVEMIKDGGARPNEGTFVNVLGACSDMAGLGEGQQVHLLISKSVYQDRTFVAS 299

Query: 495 SLITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
           +L+ MY+KCG +  A  +F D      D++ WN +IA YA +G   EAI+LFE+M   G 
Sbjct: 300 ALLNMYSKCGELSIARKIFDDVVISQRDLVLWNGMIAAYAHHGCGMEAIELFEDMQGLGF 359

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
            P+ V+++ +LSACSH GLVD GL  F+ +    +I+   +H+AC++DL  RAGRL EA+
Sbjct: 360 KPNDVSYVELLSACSHAGLVDEGLNYFDELGRDNSIQLREDHHACLVDLCGRAGRLKEAY 419

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672
           + +K +  K ++ IWG LL  C  H ++++G++A ++L + +P+    Y LLSN++A   
Sbjct: 420 DFIKQLGTKASSSIWGGLLAGCNAHGDLEIGQLAAKELEKEDPENAGTYLLLSNIYASGR 479

Query: 673 RWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +W E  +VR+ M+  G +KQPGCSWIEV N++H FL+ D    ++  I + +  + A+++
Sbjct: 480 KWREASRVRLKMKEKGLKKQPGCSWIEVGNRVHVFLARDKSHYQSNLIYSLVHDIHAEMK 539



 Score =  252 bits (643), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 148/458 (32%), Positives = 251/458 (54%), Gaps = 36/458 (7%)

Query: 103 MFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKL 162
           M   D+ +W  +I+ Y + G +  AR LFD +   +D   W AM++GY ++    EA++L
Sbjct: 1   MHERDVVTWTAVISGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERL 60

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAW 222
            + MP KN+VSWN+M+ GY KN E+  A + FE M ER++VSWN ++   V+   ++ A 
Sbjct: 61  FEVMPVKNVVSWNTMIDGYGKNREVDKAIEVFERMHERNMVSWNAVIAALVQCGRVEEAR 120

Query: 223 KFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEE 282
           + F ++P+++V+SW TM+ G AR+GR+ EAR++FD+MP RNVV+WNAM+  Y +  +++E
Sbjct: 121 RRFDEMPKRDVISWTTMVMGLARSGRVDEARKVFDRMPERNVVSWNAMVTGYAKNMRLDE 180

Query: 283 AARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRM 342
           A  LF  MPERN  SW TMI G+++  +L  AR++ ++MP KN+ + T MI+GYVQ    
Sbjct: 181 AFDLFERMPERNLSSWNTMITGFIQNGELAWARKVFNEMPEKNVVSWTTMITGYVQEGES 240

Query: 343 DEANQIFDKIGTHDVVCWN--VMIKGYAQCGRM-----DEAINLFRQMVNKDIVTWNTMI 395
           + A ++F ++        N    +     C  M      + ++L   +++K +    T +
Sbjct: 241 ESALKVFVEMIKDGGARPNEGTFVNVLGACSDMAGLGEGQQVHL---LISKSVYQDRTFV 297

Query: 396 AG-----YAQIRQMDDAVKIFEEMG-KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
           A      Y++  ++  A KIF+++   +R+ V WN +I+ +  +   ++A+++F  M   
Sbjct: 298 ASALLNMYSKCGELSIARKIFDDVVISQRDLVLWNGMIAAYAHHGCGMEAIELFEDMQGL 357

Query: 450 GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS----------LITM 499
           G K +  +    LSAC+H   +  G           Y ++L   NS          L+ +
Sbjct: 358 GFKPNDVSYVELLSACSHAGLVDEGLN---------YFDELGRDNSIQLREDHHACLVDL 408

Query: 500 YAKCGRIQNAELLFKDADPVDVIS-WNSLIAGYAINGN 536
             + GR++ A    K        S W  L+AG   +G+
Sbjct: 409 CGRAGRLKEAYDFIKQLGTKASSSIWGGLLAGCNAHGD 446



 Score =  245 bits (626), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 142/461 (30%), Positives = 258/461 (55%), Gaps = 36/461 (7%)

Query: 41  MSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ-RNLVSWNSMIAGYLHNDKVKEAREL 99
           M +++ VT+ ++IS Y K G + DAR+LF+++   +++V+W +M++GY+   +++EA  L
Sbjct: 1   MHERDVVTWTAVISGYIKCGLIVDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERL 60

Query: 100 FDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA 159
           F+ M   ++ SW  MI  Y +  E++KA E+F+ + ++ +   WNA++A   + G   EA
Sbjct: 61  FEVMPVKNVVSWNTMIDGYGKNREVDKAIEVFERM-HERNMVSWNAVIAALVQCGRVEEA 119

Query: 160 KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLD 219
           ++  D MP ++++SW +M+ G  ++G +  A K F+ M ER+VVSWN M+ GY +   LD
Sbjct: 120 RRRFDEMPKRDVISWTTMVMGLARSGRVDEARKVFDRMPERNVVSWNAMVTGYAKNMRLD 179

Query: 220 SAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ 279
            A+  F+++PE+N+ SW TM++G+ +NG +  AR++F++MP +NVV+W  MI  YVQ G+
Sbjct: 180 EAFDLFERMPERNLSSWNTMITGFIQNGELAWARKVFNEMPEKNVVSWTTMITGYVQEGE 239

Query: 280 IEEAARLFIEM-----PERNPVSWTTMIDGYVRIAKLDEARR---LLDQMPYKN-IAAQT 330
            E A ++F+EM        N  ++  ++     +A L E ++   L+ +  Y++     +
Sbjct: 240 SESALKVFVEMIKDGGARPNEGTFVNVLGACSDMAGLGEGQQVHLLISKSVYQDRTFVAS 299

Query: 331 AMISGYVQNKRMDEANQIFDK--IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----V 384
           A+++ Y +   +  A +IFD   I   D+V WN MI  YA  G   EAI LF  M     
Sbjct: 300 ALLNMYSKCGELSIARKIFDDVVISQRDLVLWNGMIAAYAHHGCGMEAIELFEDMQGLGF 359

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI-- 442
             + V++  +++  +    +D+ +  F+E+G R N++         L+ + H   + +  
Sbjct: 360 KPNDVSYVELLSACSHAGLVDEGLNYFDELG-RDNSIQ--------LREDHHACLVDLCG 410

Query: 443 --------FVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
                   +  + Q G KA  S     L+ C     L++G+
Sbjct: 411 RAGRLKEAYDFIKQLGTKASSSIWGGLLAGCNAHGDLEIGQ 451



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 119/342 (34%), Positives = 187/342 (54%), Gaps = 47/342 (13%)

Query: 30  RVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLH 89
           R+EEA ++F  M  KN V++N+MI  Y KN  V+ A ++FE+M +RN+VSWN++IA  + 
Sbjct: 53  RIEEAERLFEVMPVKNVVSWNTMIDGYGKNREVDKAIEVFERMHERNMVSWNAVIAALVQ 112

Query: 90  NDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAG 149
             +V+EAR  FD+M + D+ SW  M+    R G +++AR++FD +P + +   WNAMV G
Sbjct: 113 CGRVEEARRRFDEMPKRDVISWTTMVMGLARSGRVDEARKVFDRMPER-NVVSWNAMVTG 171

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML 209
           YAK    +EA  L + MP +N+ SWN+M++G+ +NGE+  A K F  M E++VVSW  M+
Sbjct: 172 YAKNMRLDEAFDLFERMPERNLSSWNTMITGFIQNGELAWARKVFNEMPEKNVVSWTTMI 231

Query: 210 DGYVELDDLDSAWKFFQKI-------PEQ----NVVSWVTMLSG---------------- 242
            GYV+  + +SA K F ++       P +    NV+   + ++G                
Sbjct: 232 TGYVQEGESESALKVFVEMIKDGGARPNEGTFVNVLGACSDMAGLGEGQQVHLLISKSVY 291

Query: 243 -------------YARNGRMLEARRLFDQMPI--RNVVAWNAMIAAYVQRGQIEEAARLF 287
                        Y++ G +  AR++FD + I  R++V WN MIAAY   G   EA  LF
Sbjct: 292 QDRTFVASALLNMYSKCGELSIARKIFDDVVISQRDLVLWNGMIAAYAHHGCGMEAIELF 351

Query: 288 IEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
            +M     + N VS+  ++        +DE     D++   N
Sbjct: 352 EDMQGLGFKPNDVSYVELLSACSHAGLVDEGLNYFDELGRDN 393



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/329 (31%), Positives = 180/329 (54%), Gaps = 27/329 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I  L + GRVEEA + F +M +++ +++ +M+   A++GRV++ARK+F++MP+RN+V
Sbjct: 104 NAVIAALVQCGRVEEARRRFDEMPKRDVISWTTMVMGLARSGRVDEARKVFDRMPERNVV 163

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           SWN+M+ GY  N ++ EA +LF++M   +L SW  MIT + + GEL  AR++F+ +P K 
Sbjct: 164 SWNAMVTGYAKNMRLDEAFDLFERMPERNLSSWNTMITGFIQNGELAWARKVFNEMPEK- 222

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLL-------DAMPSK----NIVSWNSMLSGYTKNGEM 187
           +   W  M+ GY + G    A K+         A P++    N++   S ++G  +  ++
Sbjct: 223 NVVSWTTMITGYVQEGESESALKVFVEMIKDGGARPNEGTFVNVLGACSDMAGLGEGQQV 282

Query: 188 H-LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK--IPEQNVVSWVTMLSGYA 244
           H L SK     ++R  V+ + +L+ Y +  +L  A K F    I ++++V W  M++ YA
Sbjct: 283 HLLISK--SVYQDRTFVA-SALLNMYSKCGELSIARKIFDDVVISQRDLVLWNGMIAAYA 339

Query: 245 RNGRMLEARRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW-- 298
            +G  +EA  LF+ M       N V++  +++A    G ++E    F E+   N +    
Sbjct: 340 HHGCGMEAIELFEDMQGLGFKPNDVSYVELLSACSHAGLVDEGLNYFDELGRDNSIQLRE 399

Query: 299 ---TTMIDGYVRIAKLDEARRLLDQMPYK 324
                ++D   R  +L EA   + Q+  K
Sbjct: 400 DHHACLVDLCGRAGRLKEAYDFIKQLGTK 428



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 103/208 (49%), Gaps = 21/208 (10%)

Query: 10  NKGSYV--FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARK 67
           N+G++V        +  LG+  +V   + I   + Q  T   +++++ Y+K G ++ ARK
Sbjct: 259 NEGTFVNVLGACSDMAGLGEGQQVH--LLISKSVYQDRTFVASALLNMYSKCGELSIARK 316

Query: 68  LFEQ--MPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRK 121
           +F+   + QR+LV WN MIA Y H+    EA ELF+ M    F+P+  S+  +++  +  
Sbjct: 317 IFDDVVISQRDLVLWNGMIAAYAHHGCGMEAIELFEDMQGLGFKPNDVSYVELLSACSHA 376

Query: 122 GELEKARELFDLLPN------KEDT-ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS- 173
           G +++    FD L        +ED  AC   +V    + G   EA   +  + +K   S 
Sbjct: 377 GLVDEGLNYFDELGRDNSIQLREDHHAC---LVDLCGRAGRLKEAYDFIKQLGTKASSSI 433

Query: 174 WNSMLSGYTKNGEMHLASKFFEAMEERD 201
           W  +L+G   +G++ +     + +E+ D
Sbjct: 434 WGGLLAGCNAHGDLEIGQLAAKELEKED 461


>gi|242094598|ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
 gi|241916012|gb|EER89156.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
          Length = 623

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/592 (39%), Positives = 345/592 (58%), Gaps = 8/592 (1%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           +A  A Y   G+   A   +    S +    N +++     G +  A K F+   + DVV
Sbjct: 18  HAAAAAYVSYGSMGAASAAVGLEQSHDP---NRLIAELAAAGRVWDARKLFDGTPDWDVV 74

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPE--QNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
           SW  ++  Y     L  A + F + P+  +NVV+W  +LSGYAR   + EA  LF +MP 
Sbjct: 75  SWTALVSAYARRGMLRDARELFDR-PDARRNVVTWTALLSGYARARLVDEAEALFQRMPQ 133

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           RNVV+WN M+ AY   G++ +A  LF  MP R+  SW  ++   VR   +D+AR L  +M
Sbjct: 134 RNVVSWNTMLEAYAAAGRVGDACALFDRMPVRDAGSWNILLATLVRSGSVDKARELFGRM 193

Query: 322 PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
           P +++ A T M+ G  ++ ++DEA  +FD +   +VV WN MI GY +  R+DEA++LF 
Sbjct: 194 PERDVMAWTTMVDGVARSGKVDEARVLFDSMPERNVVSWNAMISGYTRNHRIDEALDLFM 253

Query: 382 QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALK 441
           +M  +DI + N M+ G+ Q + +  A ++F+EM   RN V+W  +++G+L+ +    AL 
Sbjct: 254 KMPERDIASCNIMVTGFIQNKDLKRARELFDEM-PERNVVTWTTMMNGYLKGKQSELALG 312

Query: 442 IFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYA 501
           +F  M   G + +  T   AL AC+ LAAL  G+Q+H +  K+ +  D FV ++L+ +YA
Sbjct: 313 LFSGMLMAGTRPNQVTFLGALDACSDLAALCEGKQVHQMICKTTFQFDAFVESALMNVYA 372

Query: 502 KCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIG 561
           KCG I  A  LF  +   D+ISWN +IA YA +G   EAI L+E+M   G  P+ VT++ 
Sbjct: 373 KCGEIGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAILLYEKMQENGYRPNDVTYVV 432

Query: 562 VLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIK 621
           +LSACSH GLVD GLK+FE M    +I    EHY C+IDL SRAGRLD+A  ++  +KIK
Sbjct: 433 LLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIK 492

Query: 622 PNAG-IWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKV 680
           P +G +W  LLG C  H N  +G +A   L + EP     Y LLSN++A AG+W E  ++
Sbjct: 493 PASGSVWSALLGGCNAHGNESIGNLAARNLLQAEPDNAGTYTLLSNIYASAGKWKEAAEI 552

Query: 681 RVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           R  M   G +KQPGCSWIEV N++H F++ D     +  I   L+ +   +R
Sbjct: 553 RSEMNNRGLKKQPGCSWIEVANKVHVFVARDKSHSESDLIYGLLQNIHHMMR 604



 Score =  269 bits (688), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 173/524 (33%), Positives = 267/524 (50%), Gaps = 52/524 (9%)

Query: 81  NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
           N +IA      +V +AR+LFD     D+ SW  +++ Y R+G L  ARELFD    + + 
Sbjct: 46  NRLIAELAAAGRVWDARKLFDGTPDWDVVSWTALVSAYARRGMLRDARELFDRPDARRNV 105

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER 200
             W A+++GYA+    +EA+ L   MP +N+VSWN+ML  Y   G +  A   F+ M  R
Sbjct: 106 VTWTALLSGYARARLVDEAEALFQRMPQRNVVSWNTMLEAYAAAGRVGDACALFDRMPVR 165

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
           D  SWN++L   V    +D A + F ++PE++V++W TM+ G AR+G++ EAR LFD MP
Sbjct: 166 DAGSWNILLATLVRSGSVDKARELFGRMPERDVMAWTTMVDGVARSGKVDEARVLFDSMP 225

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
            RNVV+WNAMI+ Y +  +I+EA  LF++MPER+  S   M+ G+++   L  AR L D+
Sbjct: 226 ERNVVSWNAMISGYTRNHRIDEALDLFMKMPERDIASCNIMVTGFIQNKDLKRARELFDE 285

Query: 321 MPYKNIAAQTAMISGYVQNKRMDEANQIFDKI---GT----------------------- 354
           MP +N+   T M++GY++ K+ + A  +F  +   GT                       
Sbjct: 286 MPERNVVTWTTMMNGYLKGKQSELALGLFSGMLMAGTRPNQVTFLGALDACSDLAALCEG 345

Query: 355 ---HDVVC----------WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQI 401
              H ++C           + ++  YA+CG +  A  LF     KD+++WN +IA YA  
Sbjct: 346 KQVHQMICKTTFQFDAFVESALMNVYAKCGEIGLARKLFDLSREKDLISWNGIIAAYAHH 405

Query: 402 RQMDDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA---DH 455
               +A+ ++E+M   G R N V++  L+S    +    + LKIF  M  +   A   +H
Sbjct: 406 GVGIEAILLYEKMQENGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEH 465

Query: 456 STLACALSACAHLAAL-QLGRQIHHLAIK--SGYVNDLFVGNSLITMYAKCGRIQNAELL 512
            T  C +  C+    L    R IH+L IK  SG V    +G          G +    LL
Sbjct: 466 YT--CLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGCNAHGNESIGNLAARNLL 523

Query: 513 FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
              A+P +  ++  L   YA  G   EA ++  EM   G+   P
Sbjct: 524 --QAEPDNAGTYTLLSNIYASAGKWKEAAEIRSEMNNRGLKKQP 565



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 137/486 (28%), Positives = 233/486 (47%), Gaps = 83/486 (17%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHN 90
           V+EA  +F +M Q+N V++N+M+ AYA  GRV DA  LF++MP R+  SWN ++A  + +
Sbjct: 121 VDEAEALFQRMPQRNVVSWNTMLEAYAAAGRVGDACALFDRMPVRDAGSWNILLATLVRS 180

Query: 91  DKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGY 150
             V +ARELF +M   D+ +W  M+    R G++++AR LFD +P + +   WNAM++GY
Sbjct: 181 GSVDKARELFGRMPERDVMAWTTMVDGVARSGKVDEARVLFDSMPER-NVVSWNAMISGY 239

Query: 151 AKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLD 210
            +    +EA  L   MP ++I S N M++G+ +N ++  A + F+ M ER+VV+W  M++
Sbjct: 240 TRNHRIDEALDLFMKMPERDIASCNIMVTGFIQNKDLKRARELFDEMPERNVVTWTTMMN 299

Query: 211 GYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSG------------------------ 242
           GY++    + A   F  +       N V+++  L                          
Sbjct: 300 GYLKGKQSELALGLFSGMLMAGTRPNQVTFLGALDACSDLAALCEGKQVHQMICKTTFQF 359

Query: 243 -----------YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
                      YA+ G +  AR+LFD    +++++WN +IAAY   G   EA  L+ +M 
Sbjct: 360 DAFVESALMNVYAKCGEIGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAILLYEKMQ 419

Query: 292 ER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPY-KNIAAQ----TAMISGYVQNKRM 342
           E     N V++  ++        +DE  ++ + M   ++IA +    T +I    +  R+
Sbjct: 420 ENGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRL 479

Query: 343 DEANQI--FDKIGTHDVVCWNVMIKGYAQCGRMDEAI------NLFRQMVNKDIVTWNTM 394
           D+A ++  + KI       W+ ++ G    G  +E+I      NL  Q    +  T+  +
Sbjct: 480 DDAKRLIHYLKIKPASGSVWSALLGGCNAHG--NESIGNLAARNLL-QAEPDNAGTYTLL 536

Query: 395 IAGYAQIRQMDDAVKIFEEMG----KRRNTVSW-------------------NALISGFL 431
              YA   +  +A +I  EM     K++   SW                   + LI G L
Sbjct: 537 SNIYASAGKWKEAAEIRSEMNNRGLKKQPGCSWIEVANKVHVFVARDKSHSESDLIYGLL 596

Query: 432 QNEFHL 437
           QN  H+
Sbjct: 597 QNIHHM 602


>gi|68611229|emb|CAE03043.3| OSJNBa0084A10.18 [Oryza sativa Japonica Group]
          Length = 729

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/579 (38%), Positives = 338/579 (58%), Gaps = 5/579 (0%)

Query: 143 WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV 202
           WN MV+G  +     EA+K+ DAMP +N VSW ++L+GY + G +  A + F  + +R+V
Sbjct: 68  WNCMVSGLIRNRMLAEARKVFDAMPVRNSVSWAALLTGYARCGRVAEARELFNRIPDRNV 127

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR 262
           VSWN M+ GY     +  A + F  +P ++ VSW+TM+SGY +   + EAR LFD MP  
Sbjct: 128 VSWNAMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSP 187

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
                NA+++ YV+ G +  A  LF +M  RNPVSW  MI GY R   +  A+RL D+MP
Sbjct: 188 PTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMP 247

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
            K++ ++TA++ GY+QN  +D A ++F  +   D V WN M+ G+ +  R+D+A+ LF +
Sbjct: 248 EKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSE 307

Query: 383 MVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI 442
           M ++D ++WN ++ GY Q   MD A   F      ++ +SWN LISG+ ++E    AL +
Sbjct: 308 MPDRDQISWNAILQGYVQQGDMDSANAWFRR-APNKDAISWNTLISGY-KDE---GALSL 362

Query: 443 FVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
              M + G K D +TL+  +S CA L +L  G+ +H  AIK+G+ +D  V +SLI+MY+K
Sbjct: 363 LSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSK 422

Query: 503 CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
           CG I  A  +F+     D ++WN++IA YA +G A EA+K+F+ M   G  PD  TF+ +
Sbjct: 423 CGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSI 482

Query: 563 LSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKP 622
           LSAC+H G +  G   F  M E + + P  +HY+CM+DLL R+G + +A++  + +    
Sbjct: 483 LSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDLLGRSGFIHQAYDFTRRIPSDH 542

Query: 623 NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRV 682
               W TL   C  H  I+LG I    + +  P     Y LLSN++A    W     VR 
Sbjct: 543 RTTAWETLFSVCNSHGEIQLGEIIARNVLKARPSDGGMYTLLSNIYAAKEMWSSAASVRG 602

Query: 683 SMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEIC 721
            M+  G +K+ GCSWIE+K ++ TF S D       +IC
Sbjct: 603 FMKERGLKKETGCSWIELKGEVVTFSSNDSNHPLIEQIC 641



 Score =  286 bits (732), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 161/495 (32%), Positives = 263/495 (53%), Gaps = 68/495 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  N  I +  ++GRV  A ++F +MS++N  T+N M+S   +N  + +ARK+F+ MP 
Sbjct: 34  VFQSNTAINEHFRAGRVAAARRVFDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMPV 93

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN VSW +++ GY    +V EARELF+++   ++ SW  M++ Y R G +++ARELFD++
Sbjct: 94  RNSVSWAALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFDMM 153

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P ++D + W  M++GY K  +  EA++L D+MPS      N++LSGY + G M  A   F
Sbjct: 154 PWRDDVS-WLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYMRAAEVLF 212

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
             M+ R+ VSWN+M+ GY     +  A + F ++PE++V+S   ++ GY +NG +  A +
Sbjct: 213 GQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWK 272

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
           +F  MP R+ VAWN M+  +V+  ++++A +LF EMP+R+ +SW  ++ GYV+   +D A
Sbjct: 273 VFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWNAILQGYVQQGDMDSA 332

Query: 315 RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD------------------------ 350
                + P K+  +   +ISGY     +   +++                          
Sbjct: 333 NAWFRRAPNKDAISWNTLISGYKDEGALSLLSEMIRGGLKPDQATLSVVISICASLVSLG 392

Query: 351 ----------KIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYA 399
                     K G  HD +  + +I  Y++CG + EA  +F  ++ +D VTWN MIA YA
Sbjct: 393 CGKMVHLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYA 452

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
                D+A+K+F+                                +MT+ G + DH+T  
Sbjct: 453 YHGLADEALKVFD--------------------------------MMTKAGFRPDHATFL 480

Query: 460 CALSACAHLAALQLG 474
             LSACAH   L  G
Sbjct: 481 SILSACAHKGYLYEG 495


>gi|356532382|ref|XP_003534752.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09410-like [Glycine max]
          Length = 669

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/628 (36%), Positives = 361/628 (57%), Gaps = 45/628 (7%)

Query: 115 ITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSW 174
           IT   R G+L++AR+LFD +P ++D + +N+M+A Y K  +  EA+ +   MP +N+V+ 
Sbjct: 72  ITILGRHGKLDEARKLFDEMPQRDDVS-YNSMIAVYLKNKDLLEAETVFKEMPQRNVVAE 130

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
           ++M+ GY K G +  A K F+ M +R+  SW  ++ GY     ++ A   F ++PE+NVV
Sbjct: 131 SAMIDGYAKVGRLDDARKVFDNMTQRNAFSWTSLISGYFSCGKIEEALHLFDQMPERNVV 190

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
           SW  ++ G+ARNG M  A R F  MP +N++AW AM+ AY+  G   EA +LF+EMPERN
Sbjct: 191 SWTMVVLGFARNGLMDHAGRFFYLMPEKNIIAWTAMVKAYLDNGCFSEAYKLFLEMPERN 250

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
             SW  MI G +R  ++DEA  L + MP +N  + TAM+SG  QNK +  A + FD +  
Sbjct: 251 VRSWNIMISGCLRANRVDEAIGLFESMPDRNHVSWTAMVSGLAQNKMIGIARKYFDLMPY 310

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            D+  W  MI      G MDEA  LF Q+  K++ +WNTMI GYA               
Sbjct: 311 KDMAAWTAMITACVDEGLMDEARKLFDQIPEKNVGSWNTMIDGYA--------------- 355

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
                            +N +  +AL +FVLM +   + + +T+   +++C  +  L   
Sbjct: 356 -----------------RNSYVGEALNLFVLMLRSCFRPNETTMTSVVTSCDGMVELM-- 396

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
            Q H + I  G+ ++ ++ N+LIT+Y+K G + +A L+F+     DV+SW ++I  Y+ +
Sbjct: 397 -QAHAMVIHLGFEHNTWLTNALITLYSKSGDLCSARLVFEQLKSKDVVSWTAMIVAYSNH 455

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEH 594
           G+   A+++F  M++ G+ PD VTF+G+LSACSHVGLV  G +LF+ +   Y + P  EH
Sbjct: 456 GHGHHALQVFARMLVSGIKPDEVTFVGLLSACSHVGLVHQGRRLFDSIKGTYNLTPKAEH 515

Query: 595 YACMIDLLSRAGRLDEAFEMVKGMKIKPNA---GIWGTLLGACRMHQNIKLGRIAVEKLS 651
           Y+C++D+L RAG +DEA ++V    I P+A    +   LLGACR+H ++ +     EKL 
Sbjct: 516 YSCLVDILGRAGLVDEAMDVVA--TIPPSARDEAVLVALLGACRLHGDVAIANSIGEKLL 573

Query: 652 ELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD 711
           ELEP  +  Y LL+N +A  G+WDE  KVR  M     ++ PG S I++  + H F+ G+
Sbjct: 574 ELEPSSSGGYVLLANTYAAEGQWDEFAKVRKRMRERNVKRIPGYSQIQITGKNHVFVVGE 633

Query: 712 PKQCRTAEIC----NTLKTLAAQIRNTP 735
               +  EI       L+ L  ++ +TP
Sbjct: 634 RSHPQIEEIYRLLQQNLQPLMREMGSTP 661



 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 163/474 (34%), Positives = 263/474 (55%), Gaps = 39/474 (8%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           +N +IT LG+ G+++EA K+F +M Q++ V+YNSMI+ Y KN  + +A  +F++MPQRN+
Sbjct: 68  RNVEITILGRHGKLDEARKLFDEMPQRDDVSYNSMIAVYLKNKDLLEAETVFKEMPQRNV 127

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
           V+ ++MI GY    ++ +AR++FD M + + FSW  +I+ Y   G++E+A  LFD +P +
Sbjct: 128 VAESAMIDGYAKVGRLDDARKVFDNMTQRNAFSWTSLISGYFSCGKIEEALHLFDQMPER 187

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            +   W  +V G+A+ G  + A +    MP KNI++W +M+  Y  NG    A K F  M
Sbjct: 188 -NVVSWTMVVLGFARNGLMDHAGRFFYLMPEKNIIAWTAMVKAYLDNGCFSEAYKLFLEM 246

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFD 257
            ER+V SWN+M+ G +  + +D A   F+ +P++N VSW  M+SG A+N  +  AR+ FD
Sbjct: 247 PERNVRSWNIMISGCLRANRVDEAIGLFESMPDRNHVSWTAMVSGLAQNKMIGIARKYFD 306

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL 317
            MP +++ AW AMI A V  G ++EA +LF ++PE+N  SW TMIDGY R + + EA  L
Sbjct: 307 LMPYKDMAAWTAMITACVDEGLMDEARKLFDQIPEKNVGSWNTMIDGYARNSYVGEALNL 366

Query: 318 LDQMPYK----NIAAQTAMISGYVQNKRMDEANQIFDKIG-THDVVCWNVMIKGYAQCGR 372
              M       N    T++++       + +A+ +   +G  H+    N +I  Y++ G 
Sbjct: 367 FVLMLRSCFRPNETTMTSVVTSCDGMVELMQAHAMVIHLGFEHNTWLTNALITLYSKSGD 426

Query: 373 MDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
           +  A  +F Q+ +KD+V+W  MI  Y+       A+++F  M           L+SG   
Sbjct: 427 LCSARLVFEQLKSKDVVSWTAMIVAYSNHGHGHHALQVFARM-----------LVSGI-- 473

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
                              K D  T    LSAC+H+  +  GR++   +IK  Y
Sbjct: 474 -------------------KPDEVTFVGLLSACSHVGLVHQGRRLFD-SIKGTY 507



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 119/405 (29%), Positives = 208/405 (51%), Gaps = 33/405 (8%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V  ++  I    K GR+++A K+F  M+Q+N  ++ S+IS Y   G++ +A  LF+QMP+
Sbjct: 127 VVAESAMIDGYAKVGRLDDARKVFDNMTQRNAFSWTSLISGYFSCGKIEEALHLFDQMPE 186

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN+VSW  ++ G+  N  +  A   F  M   ++ +W  M+  Y   G   +A +LF  +
Sbjct: 187 RNVVSWTMVVLGFARNGLMDHAGRFFYLMPEKNIIAWTAMVKAYLDNGCFSEAYKLFLEM 246

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P + +   WN M++G  +    +EA  L ++MP +N VSW +M+SG  +N  + +A K+F
Sbjct: 247 PER-NVRSWNIMISGCLRANRVDEAIGLFESMPDRNHVSWTAMVSGLAQNKMIGIARKYF 305

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
           + M  +D+ +W  M+   V+   +D A K F +IPE+NV SW TM+ GYARN  + EA  
Sbjct: 306 DLMPYKDMAAWTAMITACVDEGLMDEARKLFDQIPEKNVGSWNTMIDGYARNSYVGEALN 365

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
           LF  M +R+    N                       E    S  T  DG V   +L +A
Sbjct: 366 LFVLM-LRSCFRPN-----------------------ETTMTSVVTSCDGMV---ELMQA 398

Query: 315 RRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRM 373
             ++  + ++ N     A+I+ Y ++  +  A  +F+++ + DVV W  MI  Y+  G  
Sbjct: 399 HAMVIHLGFEHNTWLTNALITLYSKSGDLCSARLVFEQLKSKDVVSWTAMIVAYSNHGHG 458

Query: 374 DEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
             A+ +F +M    +  D VT+  +++  + +  +    ++F+ +
Sbjct: 459 HHALQVFARMLVSGIKPDEVTFVGLLSACSHVGLVHQGRRLFDSI 503


>gi|296084001|emb|CBI24389.3| unnamed protein product [Vitis vinifera]
          Length = 665

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/640 (36%), Positives = 382/640 (59%), Gaps = 21/640 (3%)

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN 136
           LV  +S I  +  N  +KEA  +F +M   +  SW  M+T Y   G + KAR++F+ +P 
Sbjct: 31  LVHCHSQITKHGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFEKMPQ 90

Query: 137 KEDTACWNAMVAGYAK-----IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
           +  TA +NAM+  Y +     IG   EA KL   M  +N +S+ +M++G  + G +  A 
Sbjct: 91  R-TTASYNAMITAYTRSNPMMIG---EASKLFAEMRERNSISYAAMITGLARAGMVDNAE 146

Query: 192 KFF--EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRM 249
           + +    +E RD V  N ++ GY+++  L+ A + F+ + E++V+SW +M+ GY + G++
Sbjct: 147 ELYLETPVEWRDPVCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKI 206

Query: 250 LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER-----NPVSWTTMIDG 304
             AR LF++MP RNVV W AMI  +++ G  E    LF+ M +      NP + T M + 
Sbjct: 207 GHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMFEA 266

Query: 305 YVRIAKLDEA---RRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW 360
                +  E      L+ +M ++ ++    A+I  Y +   + EA +IFD +   DVV W
Sbjct: 267 CSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIFDMMNRKDVVSW 326

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
           N +I GY Q   ++E   LF +   KD+++W TMI G++   +M  ++++F  M K+ + 
Sbjct: 327 NALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIELFRMMPKQ-DD 385

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
           ++W A+ISGF+ N  + +A+  F+ M ++  + +  TL+  LSA A LA L  G QIH L
Sbjct: 386 IAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLATLNQGLQIHTL 445

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEA 540
            +K G   DL + NSL++MY KCG + +   +F   +  +++S+NS+I G+A NG   EA
Sbjct: 446 VVKMGMEFDLSIQNSLVSMYTKCGNVADGHQIFTSINSPNIVSFNSMITGFAQNGFGEEA 505

Query: 541 IKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMID 600
           ++LF +M+ EG  P+ +TF+GVLSAC+HVGL++ G   F+ M  +Y IEP   HYAC++D
Sbjct: 506 LELFHKMLNEGQKPNEITFLGVLSACTHVGLLEQGWNYFKSMKSLYQIEPGPHHYACIVD 565

Query: 601 LLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSC 660
           LL RAG LD+A ++++ M  +P++G+WG LLGA R+H  + + ++A +++ +LEP   + 
Sbjct: 566 LLGRAGFLDDAIDLIRSMPCEPHSGVWGALLGASRIHLRLDVAKLAAQQIFKLEPDNAAP 625

Query: 661 YALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEV 700
           YA+LS +++ AGR  + E+VR++    G +K  G SWI V
Sbjct: 626 YAVLSFLYSSAGRNRDSEQVRMAQGLKGVKKSAGYSWIIV 665



 Score =  280 bits (715), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 160/518 (30%), Positives = 284/518 (54%), Gaps = 53/518 (10%)

Query: 9   GNKGS-YVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARK 67
           GN+ + ++ + + +IT+ G++G ++EA  IFS+M  KN +++ +M++AY +NG +  ARK
Sbjct: 24  GNRTTKFLVHCHSQITKHGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARK 83

Query: 68  LFEQMPQRNLVSWNSMIAGYLHNDK--VKEARELFDKMFRPDLFSWALMITCYTRKGELE 125
           +FE+MPQR   S+N+MI  Y  ++   + EA +LF +M   +  S+A MIT   R G ++
Sbjct: 84  MFEKMPQRTTASYNAMITAYTRSNPMMIGEASKLFAEMRERNSISYAAMITGLARAGMVD 143

Query: 126 KARELFDLLPNK-EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
            A EL+   P +  D  C NA+++GY K+G   EA ++ + M  ++++SW+SM+ GY K 
Sbjct: 144 NAEELYLETPVEWRDPVCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKK 203

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ-----NVVSWVTM 239
           G++  A + FE M ER+VV+W  M+DG++++   +  +  F ++ ++     N  +   M
Sbjct: 204 GKIGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVM 263

Query: 240 LSG-----------------------------------YARNGRMLEARRLFDQMPIRNV 264
                                                 Y R   ++EAR++FD M  ++V
Sbjct: 264 FEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIFDMMNRKDV 323

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
           V+WNA+IA YVQ  ++EE   LF +  +++ +SWTTMI G+    K+ ++  L   MP +
Sbjct: 324 VSWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIELFRMMPKQ 383

Query: 325 NIAAQTAMISGYVQNKRMDEA----NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF 380
           +  A TA+ISG+V N   +EA     ++  K+   + +  + ++   A    +++ + + 
Sbjct: 384 DDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLATLNQGLQIH 443

Query: 381 RQMVNK----DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
             +V      D+   N++++ Y +   + D  +IF  +    N VS+N++I+GF QN F 
Sbjct: 444 TLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQIFTSINS-PNIVSFNSMITGFAQNGFG 502

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
            +AL++F  M  EG+K +  T    LSAC H+  L+ G
Sbjct: 503 EEALELFHKMLNEGQKPNEITFLGVLSACTHVGLLEQG 540



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 180/345 (52%), Gaps = 24/345 (6%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF 109
           N++I  Y +   V +ARK+F+ M ++++VSWN++IAGY+ ND+V+E   LF+K  + D+ 
Sbjct: 296 NAIIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQKDVI 355

Query: 110 SWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA----KKLLDA 165
           SW  MIT ++ KG++ K+ ELF ++P ++D A W A+++G+   G Y EA     ++L  
Sbjct: 356 SWTTMITGFSNKGKMGKSIELFRMMPKQDDIA-WTAVISGFVGNGEYEEAIYWFIEMLRK 414

Query: 166 MPSKNIVSWNSMLSGY----TKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA 221
           +   N ++ +S+LS      T N  + + +   +   E D+   N ++  Y +  ++   
Sbjct: 415 VVRPNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNVADG 474

Query: 222 WKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM----PIRNVVAWNAMIAAYVQR 277
            + F  I   N+VS+ +M++G+A+NG   EA  LF +M       N + +  +++A    
Sbjct: 475 HQIFTSINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLSACTHV 534

Query: 278 GQIEEAARLFIEMP-----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTA 331
           G +E+    F  M      E  P  +  ++D   R   LD+A  L+  MP + +     A
Sbjct: 535 GLLEQGWNYFKSMKSLYQIEPGPHHYACIVDLLGRAGFLDDAIDLIRSMPCEPHSGVWGA 594

Query: 332 MISGYVQNKRMD----EANQIFDKIGTHDVVCWNVMIKGYAQCGR 372
           ++     + R+D     A QIF K+   +   + V+   Y+  GR
Sbjct: 595 LLGASRIHLRLDVAKLAAQQIF-KLEPDNAAPYAVLSFLYSSAGR 638



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 144/307 (46%), Gaps = 48/307 (15%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  N  I    +   V EA KIF  M++K+ V++N++I+ Y +N  V +   LFE+  Q
Sbjct: 292 VFLGNAIIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQ 351

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF-DL 133
           ++++SW +MI G+ +  K+ ++ ELF  M + D  +W  +I+ +   GE E+A   F ++
Sbjct: 352 KDVISWTTMITGFSNKGKMGKSIELFRMMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEM 411

Query: 134 L-----PN--------------------------------KEDTACWNAMVAGYAKIGNY 156
           L     PN                                + D +  N++V+ Y K GN 
Sbjct: 412 LRKVVRPNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNV 471

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSWNLMLDGY 212
            +  ++  ++ S NIVS+NSM++G+ +NG    A + F  M    ++ + +++  +L   
Sbjct: 472 ADGHQIFTSINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLSAC 531

Query: 213 VELDDLDSAWKFFQKIP-----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVA 266
             +  L+  W +F+ +      E     +  ++    R G + +A  L   MP   +   
Sbjct: 532 THVGLLEQGWNYFKSMKSLYQIEPGPHHYACIVDLLGRAGFLDDAIDLIRSMPCEPHSGV 591

Query: 267 WNAMIAA 273
           W A++ A
Sbjct: 592 WGALLGA 598


>gi|356510733|ref|XP_003524089.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Glycine max]
          Length = 649

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/610 (37%), Positives = 354/610 (58%), Gaps = 56/610 (9%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N  ++   + G  +EA+ L D+M  ++ V+WNSM+SGY +  E+  A + F+ M  RDVV
Sbjct: 42  NKKLSNLIRSGRISEARTLFDSMKRRDTVTWNSMISGYVQRREIARARQLFDEMPRRDVV 101

Query: 204 SWNLMLDGYVELDD---LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
           SWNL++ GY        ++   + F+ +P+++ VSW T++SGYA+NGRM +A +LF+ MP
Sbjct: 102 SWNLIVSGYFSCCGSRFVEEGRRLFELMPQRDCVSWNTVISGYAKNGRMDQALKLFNAMP 161

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLD-------- 312
             N V++NA+I  ++  G +E A   F  MPE +  S   +I G VR  +LD        
Sbjct: 162 EHNAVSYNAVITGFLLNGDVESAVGFFRTMPEHDSTSLCALISGLVRNGELDLAAGILRE 221

Query: 313 -----------------------------EARRLLDQMPY-------------KNIAAQT 330
                                        EARRL D +P              +N+ +  
Sbjct: 222 CGNGDDGKDDLVHAYNTLIAGYGQRGHVEEARRLFDVIPDDDDDGNEGKRRFRRNVVSWN 281

Query: 331 AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
           +M+  YV+   +  A ++FD++   D   WN +I  Y Q   M+EA  LFR+M + D+++
Sbjct: 282 SMMMCYVKAGDIVFARELFDRMVERDNCSWNTLISCYVQISNMEEASKLFREMPSPDVLS 341

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
           WN++I+G AQ   ++ A   FE M   +N +SWN +I+G+ +NE +  A+K+F  M  EG
Sbjct: 342 WNSIISGLAQKGDLNLAKDFFERM-PHKNLISWNTIIAGYEKNEDYKGAIKLFSEMQLEG 400

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
           ++ D  TL+  +S    L  L LG+Q+H L  K+  + D  + NSLITMY++CG I +A 
Sbjct: 401 ERPDKHTLSSVISVSTGLVDLYLGKQLHQLVTKT-VLPDSPINNSLITMYSRCGAIVDAC 459

Query: 511 LLFKDADPV-DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
            +F +     DVI+WN++I GYA +G+A EA++LF+ M    + P  +TFI VL+AC+H 
Sbjct: 460 TVFNEIKLYKDVITWNAMIGGYASHGSAAEALELFKLMKRLKIHPTYITFISVLNACAHA 519

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629
           GLV+ G + F+ M   Y IEP VEH+A ++D+L R G+L EA +++  M  KP+  +WG 
Sbjct: 520 GLVEEGWRQFKSMINDYGIEPRVEHFASLVDILGRQGQLQEAMDLINTMPFKPDKAVWGA 579

Query: 630 LLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689
           LLGACR+H N++L  +A + L  LEP+ ++ Y LL NM+A  G+WD+ E VRV ME    
Sbjct: 580 LLGACRVHNNVELALVAADALIRLEPESSAPYVLLYNMYANLGQWDDAESVRVLMEEKNV 639

Query: 690 QKQPGCSWIE 699
           +KQ G SW++
Sbjct: 640 KKQAGYSWVD 649



 Score =  265 bits (678), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 165/564 (29%), Positives = 294/564 (52%), Gaps = 33/564 (5%)

Query: 10  NKGSYVFNQ-NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKL 68
           N  S   NQ NKK++ L +SGR+ EA  +F  M +++TVT+NSMIS Y +   +  AR+L
Sbjct: 32  NYNSSPLNQSNKKLSNLIRSGRISEARTLFDSMKRRDTVTWNSMISGYVQRREIARARQL 91

Query: 69  FEQMPQRNLVSWNSMIAGYLH---NDKVKEARELFDKMFRPDLFSWALMITCYTRKGELE 125
           F++MP+R++VSWN +++GY     +  V+E R LF+ M + D  SW  +I+ Y + G ++
Sbjct: 92  FDEMPRRDVVSWNLIVSGYFSCCGSRFVEEGRRLFELMPQRDCVSWNTVISGYAKNGRMD 151

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
           +A +LF+ +P + +   +NA++ G+   G+   A      MP  +  S  +++SG  +NG
Sbjct: 152 QALKLFNAMP-EHNAVSYNAVITGFLLNGDVESAVGFFRTMPEHDSTSLCALISGLVRNG 210

Query: 186 EMHLASKFFEAMEERD------VVSWNLMLDGYVELDDLDSAWKFFQKIP---------- 229
           E+ LA+         D      V ++N ++ GY +   ++ A + F  IP          
Sbjct: 211 ELDLAAGILRECGNGDDGKDDLVHAYNTLIAGYGQRGHVEEARRLFDVIPDDDDDGNEGK 270

Query: 230 ---EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
               +NVVSW +M+  Y + G ++ AR LFD+M  R+  +WN +I+ YVQ   +EEA++L
Sbjct: 271 RRFRRNVVSWNSMMMCYVKAGDIVFARELFDRMVERDNCSWNTLISCYVQISNMEEASKL 330

Query: 287 FIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEAN 346
           F EMP  + +SW ++I G  +   L+ A+   ++MP+KN+ +   +I+GY +N+    A 
Sbjct: 331 FREMPSPDVLSWNSIISGLAQKGDLNLAKDFFERMPHKNLISWNTIIAGYEKNEDYKGAI 390

Query: 347 QIF-------DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYA 399
           ++F       ++   H +     +  G        +   L  + V  D    N++I  Y+
Sbjct: 391 KLFSEMQLEGERPDKHTLSSVISVSTGLVDLYLGKQLHQLVTKTVLPDSPINNSLITMYS 450

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
           +   + DA  +F E+   ++ ++WNA+I G+  +    +AL++F LM +      + T  
Sbjct: 451 RCGAIVDACTVFNEIKLYKDVITWNAMIGGYASHGSAAEALELFKLMKRLKIHPTYITFI 510

Query: 460 CALSACAHLAALQLG-RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA-ELLFKDAD 517
             L+ACAH   ++ G RQ   +    G    +    SL+ +  + G++Q A +L+     
Sbjct: 511 SVLNACAHAGLVEEGWRQFKSMINDYGIEPRVEHFASLVDILGRQGQLQEAMDLINTMPF 570

Query: 518 PVDVISWNSLIAGYAINGNATEAI 541
             D   W +L+    ++ N   A+
Sbjct: 571 KPDKAVWGALLGACRVHNNVELAL 594


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/570 (37%), Positives = 341/570 (59%), Gaps = 3/570 (0%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           NA +A   + GN   A+   DAMP +   S+N++++GY +N     A   F  M  RD+ 
Sbjct: 21  NARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPSRDLG 80

Query: 204 SWNLMLDGY-VELDDLDSAWKFFQKIP-EQNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
           S+N ++ G  +    L  A      IP   +VVS+ ++L GY R+G + +A RLF QMP 
Sbjct: 81  SYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFHQMPE 140

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           RN V +  ++  ++  G++ EA +LF EMP+++ V+ T M+ GY +  ++ EAR L D+M
Sbjct: 141 RNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFDEM 200

Query: 322 PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
           P +N+ + TAMISGY QN ++  A ++F+ +   + V W  M+ GY Q G +++A +LF 
Sbjct: 201 PKRNVVSWTAMISGYAQNGKVILARKLFEVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFN 260

Query: 382 QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALK 441
            M +  +   N M+ G+ Q   +D A  +FE M  R +  +W+A+I  + QNEF ++AL 
Sbjct: 261 AMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDG-TWSAMIKVYEQNEFLMEALS 319

Query: 442 IFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYA 501
            F  M   G + ++++    L+ CA LA    GR++H   ++  +  D+F  ++LITMY 
Sbjct: 320 TFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYI 379

Query: 502 KCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIG 561
           KCG +  A+ +F   +P DV+ WNS+I GYA +G   EA+ +F+++ +  +APD +T+IG
Sbjct: 380 KCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIG 439

Query: 562 VLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIK 621
           VL+ACS+ G V  G ++F  M    +I     HY+CM+DLL RAG +DEA +++  M ++
Sbjct: 440 VLTACSYTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVE 499

Query: 622 PNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVR 681
           P+A IWG L+GACRMH+N ++  +A +KL ELEP     Y LLS+++   GRW++   +R
Sbjct: 500 PDAIIWGALMGACRMHKNAEIAEVAAKKLLELEPGSAGPYVLLSHIYTSTGRWEDASDMR 559

Query: 682 VSMEGSGAQKQPGCSWIEVKNQIHTFLSGD 711
             +      K PGCSWIE    +H F SGD
Sbjct: 560 KFISSRNLNKSPGCSWIEYNKMVHLFTSGD 589



 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 134/446 (30%), Positives = 230/446 (51%), Gaps = 46/446 (10%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V   N +I  L ++G +E A   F  M  + T +YN++I+ Y +N   + A  LF +MP 
Sbjct: 17  VVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPS 76

Query: 75  RNLVSWNSMIA---------------------------------GYLHNDKVKEARELFD 101
           R+L S+N++IA                                 GY+ +  + +A  LF 
Sbjct: 77  RDLGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFH 136

Query: 102 KMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKK 161
           +M   +  ++ +++  +   G + +AR+LFD +P+K D     AM++GY + G   EA+ 
Sbjct: 137 QMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDK-DVVARTAMLSGYCQAGRITEARA 195

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA 221
           L D MP +N+VSW +M+SGY +NG++ LA K FE M +R+ VSW  ML GY++   ++ A
Sbjct: 196 LFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDRNEVSWTAMLVGYIQAGHVEDA 255

Query: 222 WKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIE 281
              F  +P+  V +   M+ G+ ++G +  A+ +F++M  R+   W+AMI  Y Q   + 
Sbjct: 256 EDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLM 315

Query: 282 EAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPY----KNIAAQTAMI 333
           EA   F EM  R    N  S+ +++     +A  D  R L   M       ++ A +A+I
Sbjct: 316 EALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALI 375

Query: 334 SGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIV 389
           + Y++   +D+A ++F+     DVV WN MI GYAQ G  +EA+ +F  +    +  D +
Sbjct: 376 TMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGI 435

Query: 390 TWNTMIAGYAQIRQMDDAVKIFEEMG 415
           T+  ++   +   ++ +  +IF  MG
Sbjct: 436 TYIGVLTACSYTGKVKEGREIFNSMG 461



 Score =  222 bits (566), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 126/421 (29%), Positives = 210/421 (49%), Gaps = 40/421 (9%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKV 93
           +++     +    V  N+ I+   + G +  AR  F+ MP R   S+N++IAGY  N   
Sbjct: 5   SVRFLPSSTAPAVVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLP 64

Query: 94  KEARELFDKMFRPDLFSW-ALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAK 152
             A  LF +M   DL S+ AL+     R+  L  A      +P       + +++ GY +
Sbjct: 65  DAALGLFHRMPSRDLGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVR 124

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY 212
            G   +A +L   MP +N V++  +L G+   G ++ A K F+ M ++DVV+   ML GY
Sbjct: 125 HGLLADAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGY 184

Query: 213 VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
            +   +  A   F ++P++NVVSW  M+SGYA+NG+++ AR+LF+ MP RN V+W AM+ 
Sbjct: 185 CQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDRNEVSWTAMLV 244

Query: 273 AYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAM 332
            Y+Q G +E+A  LF  MP+    +   M+ G+ +   +D A+ + ++M  ++    +AM
Sbjct: 245 GYIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAM 304

Query: 333 ISGYVQNKRMDEANQIFDKIGTH------------------------------------- 355
           I  Y QN+ + EA   F ++                                        
Sbjct: 305 IKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLRCSF 364

Query: 356 --DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEE 413
             DV   + +I  Y +CG +D+A  +F     KD+V WN+MI GYAQ    ++A+ IF++
Sbjct: 365 DTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDD 424

Query: 414 M 414
           +
Sbjct: 425 L 425



 Score =  199 bits (507), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 114/392 (29%), Positives = 216/392 (55%), Gaps = 27/392 (6%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           + G + +AI++F QM ++N VTY  ++  +   GRVN+ARKLF++MP +++V+  +M++G
Sbjct: 124 RHGLLADAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSG 183

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
           Y    ++ EAR LFD+M + ++ SW  MI+ Y + G++  AR+LF+++P++ + + W AM
Sbjct: 184 YCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVMPDRNEVS-WTAM 242

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN 206
           + GY + G+  +A+ L +AMP   + + N+M+ G+ ++G +  A   FE M  RD  +W+
Sbjct: 243 LVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWS 302

Query: 207 LMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLS-----GYARNGRMLEARRL-- 255
            M+  Y + + L  A   F+++       N  S++++L+       A  GR L A  L  
Sbjct: 303 AMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLRC 362

Query: 256 -FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
            FD     +V A +A+I  Y++ G +++A R+F     ++ V W +MI GY +    +EA
Sbjct: 363 SFDT----DVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQHGLGEEA 418

Query: 315 RRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIGTHDVV-----CWNVMIK 365
             + D +    +A        +++      ++ E  +IF+ +G +  +      ++ M+ 
Sbjct: 419 LGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVD 478

Query: 366 GYAQCGRMDEAINLFRQM-VNKDIVTWNTMIA 396
              + G +DEA++L   M V  D + W  ++ 
Sbjct: 479 LLGRAGLVDEALDLINNMPVEPDAIIWGALMG 510



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 152/327 (46%), Gaps = 31/327 (9%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           I+   ++G+V  A K+F  M  +N V++ +M+  Y + G V DA  LF  MP   + + N
Sbjct: 212 ISGYAQNGKVILARKLFEVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVAACN 271

Query: 82  SMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF------DLLP 135
           +M+ G+  +  V  A+ +F++M   D  +W+ MI  Y +   L +A   F       + P
Sbjct: 272 AMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRP 331

Query: 136 NKED-----TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           N        T C     A Y +         +L      ++ + +++++ Y K G +  A
Sbjct: 332 NYTSFISILTVCAALATADYGR----ELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKA 387

Query: 191 SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARN 246
            + F   E +DVV WN M+ GY +    + A   F  +       + ++++ +L+  +  
Sbjct: 388 KRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYT 447

Query: 247 GRMLEARRLFDQMPIRNVV-----AWNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTT 300
           G++ E R +F+ M + + +      ++ M+    + G ++EA  L   MP E + + W  
Sbjct: 448 GKVKEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGA 507

Query: 301 MIDGYVRIAKLDE-----ARRLLDQMP 322
           ++ G  R+ K  E     A++LL+  P
Sbjct: 508 LM-GACRMHKNAEIAEVAAKKLLELEP 533



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 118/263 (44%), Gaps = 41/263 (15%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  +  IT   K G +++A ++F+    K+ V +NSMI+ YA++G   +A  +F+ +  
Sbjct: 368 VFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRL 427

Query: 75  RNL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELE 125
             +    +++  ++    +  KVKE RE+F+ M      R     ++ M+    R G ++
Sbjct: 428 ARMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVD 487

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNE-----AKKLLDAMPSKNIVSWNSMLSG 180
           +A +L + +P + D   W A++ G  ++    E     AKKLL+  P         +LS 
Sbjct: 488 EALDLINNMPVEPDAIIWGALM-GACRMHKNAEIAEVAAKKLLELEPGS--AGPYVLLSH 544

Query: 181 -YTKNGEMHLASKFFEAMEERDV--------VSWNLMLDGYVELDDLDSAWKFFQKIPEQ 231
            YT  G    AS   + +  R++        + +N M+  +   D L          PE 
Sbjct: 545 IYTSTGRWEDASDMRKFISSRNLNKSPGCSWIEYNKMVHLFTSGDVLSH--------PEH 596

Query: 232 NVV-------SWVTMLSGYARNG 247
            ++         + M SGY+ +G
Sbjct: 597 AIILNMLEELDGLLMESGYSADG 619


>gi|359479080|ref|XP_003632211.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial [Vitis vinifera]
          Length = 744

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/640 (36%), Positives = 382/640 (59%), Gaps = 21/640 (3%)

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN 136
           LV  +S I  +  N  +KEA  +F +M   +  SW  M+T Y   G + KAR++F+ +P 
Sbjct: 110 LVHCHSQITKHGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARKMFEKMPQ 169

Query: 137 KEDTACWNAMVAGYAK-----IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
           +  TA +NAM+  Y +     IG   EA KL   M  +N +S+ +M++G  + G +  A 
Sbjct: 170 R-TTASYNAMITAYTRSNPMMIG---EASKLFAEMRERNSISYAAMITGLARAGMVDNAE 225

Query: 192 KFF--EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRM 249
           + +    +E RD V  N ++ GY+++  L+ A + F+ + E++V+SW +M+ GY + G++
Sbjct: 226 ELYLETPVEWRDPVCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKKGKI 285

Query: 250 LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER-----NPVSWTTMIDG 304
             AR LF++MP RNVV W AMI  +++ G  E    LF+ M +      NP + T M + 
Sbjct: 286 GHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVMFEA 345

Query: 305 YVRIAKLDEA---RRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW 360
                +  E      L+ +M ++ ++    A+I  Y +   + EA +IFD +   DVV W
Sbjct: 346 CSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIFDMMNRKDVVSW 405

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
           N +I GY Q   ++E   LF +   KD+++W TMI G++   +M  ++++F  M K+ + 
Sbjct: 406 NALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIELFRMMPKQ-DD 464

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
           ++W A+ISGF+ N  + +A+  F+ M ++  + +  TL+  LSA A LA L  G QIH L
Sbjct: 465 IAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLATLNQGLQIHTL 524

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEA 540
            +K G   DL + NSL++MY KCG + +   +F   +  +++S+NS+I G+A NG   EA
Sbjct: 525 VVKMGMEFDLSIQNSLVSMYTKCGNVADGHQIFTSINSPNIVSFNSMITGFAQNGFGEEA 584

Query: 541 IKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMID 600
           ++LF +M+ EG  P+ +TF+GVLSAC+HVGL++ G   F+ M  +Y IEP   HYAC++D
Sbjct: 585 LELFHKMLNEGQKPNEITFLGVLSACTHVGLLEQGWNYFKSMKSLYQIEPGPHHYACIVD 644

Query: 601 LLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSC 660
           LL RAG LD+A ++++ M  +P++G+WG LLGA R+H  + + ++A +++ +LEP   + 
Sbjct: 645 LLGRAGFLDDAIDLIRSMPCEPHSGVWGALLGASRIHLRLDVAKLAAQQIFKLEPDNAAP 704

Query: 661 YALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEV 700
           YA+LS +++ AGR  + E+VR++    G +K  G SWI V
Sbjct: 705 YAVLSFLYSSAGRNRDSEQVRMAQGLKGVKKSAGYSWIIV 744



 Score =  279 bits (713), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 160/518 (30%), Positives = 284/518 (54%), Gaps = 53/518 (10%)

Query: 9   GNKGS-YVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARK 67
           GN+ + ++ + + +IT+ G++G ++EA  IFS+M  KN +++ +M++AY +NG +  ARK
Sbjct: 103 GNRTTKFLVHCHSQITKHGRNGDLKEAESIFSRMPHKNAISWTAMLTAYYENGHIAKARK 162

Query: 68  LFEQMPQRNLVSWNSMIAGYLHNDK--VKEARELFDKMFRPDLFSWALMITCYTRKGELE 125
           +FE+MPQR   S+N+MI  Y  ++   + EA +LF +M   +  S+A MIT   R G ++
Sbjct: 163 MFEKMPQRTTASYNAMITAYTRSNPMMIGEASKLFAEMRERNSISYAAMITGLARAGMVD 222

Query: 126 KARELFDLLPNK-EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
            A EL+   P +  D  C NA+++GY K+G   EA ++ + M  ++++SW+SM+ GY K 
Sbjct: 223 NAEELYLETPVEWRDPVCSNALISGYLKVGRLEEATRIFEGMGERDVISWSSMVDGYCKK 282

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ-----NVVSWVTM 239
           G++  A + FE M ER+VV+W  M+DG++++   +  +  F ++ ++     N  +   M
Sbjct: 283 GKIGHARELFERMPERNVVTWTAMIDGHMKMGCYEVGFGLFLRMRKEGFVKVNPTTLTVM 342

Query: 240 LSG-----------------------------------YARNGRMLEARRLFDQMPIRNV 264
                                                 Y R   ++EAR++FD M  ++V
Sbjct: 343 FEACSEFGEYKEGIQMHGLVSRMGFEFDVFLGNAIIIMYCRFSFVVEARKIFDMMNRKDV 402

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
           V+WNA+IA YVQ  ++EE   LF +  +++ +SWTTMI G+    K+ ++  L   MP +
Sbjct: 403 VSWNALIAGYVQNDEVEEGYVLFEKTQQKDVISWTTMITGFSNKGKMGKSIELFRMMPKQ 462

Query: 325 NIAAQTAMISGYVQNKRMDEA----NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF 380
           +  A TA+ISG+V N   +EA     ++  K+   + +  + ++   A    +++ + + 
Sbjct: 463 DDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLATLNQGLQIH 522

Query: 381 RQMVNK----DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
             +V      D+   N++++ Y +   + D  +IF  +    N VS+N++I+GF QN F 
Sbjct: 523 TLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQIFTSINS-PNIVSFNSMITGFAQNGFG 581

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
            +AL++F  M  EG+K +  T    LSAC H+  L+ G
Sbjct: 582 EEALELFHKMLNEGQKPNEITFLGVLSACTHVGLLEQG 619



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 180/345 (52%), Gaps = 24/345 (6%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF 109
           N++I  Y +   V +ARK+F+ M ++++VSWN++IAGY+ ND+V+E   LF+K  + D+ 
Sbjct: 375 NAIIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQKDVI 434

Query: 110 SWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA----KKLLDA 165
           SW  MIT ++ KG++ K+ ELF ++P ++D A W A+++G+   G Y EA     ++L  
Sbjct: 435 SWTTMITGFSNKGKMGKSIELFRMMPKQDDIA-WTAVISGFVGNGEYEEAIYWFIEMLRK 493

Query: 166 MPSKNIVSWNSMLSGY----TKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA 221
           +   N ++ +S+LS      T N  + + +   +   E D+   N ++  Y +  ++   
Sbjct: 494 VVRPNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNVADG 553

Query: 222 WKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM----PIRNVVAWNAMIAAYVQR 277
            + F  I   N+VS+ +M++G+A+NG   EA  LF +M       N + +  +++A    
Sbjct: 554 HQIFTSINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLSACTHV 613

Query: 278 GQIEEAARLFIEMP-----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTA 331
           G +E+    F  M      E  P  +  ++D   R   LD+A  L+  MP + +     A
Sbjct: 614 GLLEQGWNYFKSMKSLYQIEPGPHHYACIVDLLGRAGFLDDAIDLIRSMPCEPHSGVWGA 673

Query: 332 MISGYVQNKRMD----EANQIFDKIGTHDVVCWNVMIKGYAQCGR 372
           ++     + R+D     A QIF K+   +   + V+   Y+  GR
Sbjct: 674 LLGASRIHLRLDVAKLAAQQIF-KLEPDNAAPYAVLSFLYSSAGR 717



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 144/307 (46%), Gaps = 48/307 (15%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  N  I    +   V EA KIF  M++K+ V++N++I+ Y +N  V +   LFE+  Q
Sbjct: 371 VFLGNAIIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQQ 430

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF-DL 133
           ++++SW +MI G+ +  K+ ++ ELF  M + D  +W  +I+ +   GE E+A   F ++
Sbjct: 431 KDVISWTTMITGFSNKGKMGKSIELFRMMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEM 490

Query: 134 L-----PN--------------------------------KEDTACWNAMVAGYAKIGNY 156
           L     PN                                + D +  N++V+ Y K GN 
Sbjct: 491 LRKVVRPNPLTLSSVLSASAGLATLNQGLQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNV 550

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSWNLMLDGY 212
            +  ++  ++ S NIVS+NSM++G+ +NG    A + F  M    ++ + +++  +L   
Sbjct: 551 ADGHQIFTSINSPNIVSFNSMITGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLSAC 610

Query: 213 VELDDLDSAWKFFQKIP-----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVA 266
             +  L+  W +F+ +      E     +  ++    R G + +A  L   MP   +   
Sbjct: 611 THVGLLEQGWNYFKSMKSLYQIEPGPHHYACIVDLLGRAGFLDDAIDLIRSMPCEPHSGV 670

Query: 267 WNAMIAA 273
           W A++ A
Sbjct: 671 WGALLGA 677


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 246/631 (38%), Positives = 357/631 (56%), Gaps = 49/631 (7%)

Query: 126 KARELFDLLPNKEDTACWN-AMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSG 180
           KAR   + L  KE T   N  +V    K G   EA  +L  M    I     +++S+L G
Sbjct: 16  KART--NTLKTKEGTGKGNDGLVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQG 73

Query: 181 YTKNGEMHLASKFFEAM-----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
                 +  A      M     E +D+   N ++  YV+L  L  A + F ++P +NVVS
Sbjct: 74  CLNAKSLPDAKLLHAHMIQTQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVS 133

Query: 236 WVTMLSGYARNGRMLEARRLFDQM----------------PI------------------ 261
           W  M++ YAR+    EA   F +M                P                   
Sbjct: 134 WTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTDLEVLGEFHDEIVKGG 193

Query: 262 --RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLD 319
              NV   N ++  Y +RG IE A  LF +MP+R+ VSW  MI GYV+   +++A +L  
Sbjct: 194 FESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQ 253

Query: 320 QMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
           ++P +++     M++GY Q   ++ A ++F+K+   ++V WN MI GY Q G + EA  L
Sbjct: 254 EIPKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKL 313

Query: 380 FRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDA 439
           F+ M  +++++WN +I+G+AQ  Q+++A+K+F+ M    N VSWNA+I+G+ QN    +A
Sbjct: 314 FQIMPERNVISWNAVISGFAQNGQVEEALKLFKTM-PECNVVSWNAMIAGYSQNGQAENA 372

Query: 440 LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
           LK+F  M     K +  T A  L ACA LA L+ G + H + I+SG+ +D+ VGN+L+ M
Sbjct: 373 LKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGM 432

Query: 500 YAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTF 559
           YAKCG I++A  +F      D  S +++I GYAING + E+++LFE+M   G+ PD VTF
Sbjct: 433 YAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTF 492

Query: 560 IGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMK 619
           +GVLSAC H GLVD G + F+ MT  Y I P +EHY CMIDLL RAG  DEA +++  M 
Sbjct: 493 VGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMP 552

Query: 620 IKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEK 679
           IKP+A +WG+LL ACR H NI LG    + L  L PQ  + Y LLSN++A AGRWD++  
Sbjct: 553 IKPDADMWGSLLSACRTHNNIDLGEKVAQHLIALNPQNPAPYVLLSNIYAAAGRWDDIGS 612

Query: 680 VRVSMEGSGAQKQPGCSWIEVKNQIHTFLSG 710
           VR  M+    +K+ GCSWI +K Q+H FL G
Sbjct: 613 VRNRMKDRKVKKKLGCSWIVIKKQVHAFLVG 643



 Score =  267 bits (682), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 168/537 (31%), Positives = 283/537 (52%), Gaps = 56/537 (10%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           I +Q   ++    N ++S Y K G + +AR++F++MP +N+VSW +MIA Y  ++  +EA
Sbjct: 91  IQTQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEA 150

Query: 97  RELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAG 149
              F +M     +P+ F++A ++   T   +LE   E  D +     + +    N +V  
Sbjct: 151 LGFFYEMQDVGIQPNHFTFASILPACT---DLEVLGEFHDEIVKGGFESNVFVGNGLVDM 207

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML 209
           YAK G    A++L D MP +++VSWN+M++GY +NG +  A K F+ + +RDV++WN M+
Sbjct: 208 YAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMM 267

Query: 210 DGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNA 269
            GY +  D+++A + F+K+PEQN+VSW TM++GY +NG + EA +LF  MP RNV++WNA
Sbjct: 268 AGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNA 327

Query: 270 MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
           +I+ + Q GQ+EEA +LF  MPE N VSW  MI GY +  + + A +L  QM   ++   
Sbjct: 328 VISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPN 387

Query: 330 TAMISGYVQN-------KRMDEANQIFDKIGTH-DVVCWNVMIKGYAQCGRMDEAINLFR 381
           T   +  +         ++ +EA+++  + G   DV+  N ++  YA+CG +++A  +F 
Sbjct: 388 TETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFD 447

Query: 382 QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALK 441
           +M  +D  + + MI GYA                           I+G  +     ++L+
Sbjct: 448 RMRQQDSASLSAMIVGYA---------------------------INGCSK-----ESLE 475

Query: 442 IFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG-NSLITMY 500
           +F  M   G K D  T    LSAC H   +  GRQ   +  +  ++         +I + 
Sbjct: 476 LFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLL 535

Query: 501 AKCGRIQNA-ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
            + G    A +L+ K     D   W SL++    + N    I L E++    +A +P
Sbjct: 536 GRAGCFDEANDLINKMPIKPDADMWGSLLSACRTHNN----IDLGEKVAQHLIALNP 588



 Score =  233 bits (593), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 136/422 (32%), Positives = 238/422 (56%), Gaps = 32/422 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP----Q 74
           NK ++   K G + EA ++F +M  KN V++ +MI+AYA++    +A   F +M     Q
Sbjct: 104 NKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQ 163

Query: 75  RNLVSWNSMIA--------GYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEK 126
            N  ++ S++         G  H++ VK         F  ++F    ++  Y ++G +E 
Sbjct: 164 PNHFTFASILPACTDLEVLGEFHDEIVKGG-------FESNVFVGNGLVDMYAKRGCIEF 216

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           ARELFD +P + D   WNAM+AGY + G   +A KL   +P +++++WN+M++GY + G+
Sbjct: 217 ARELFDKMPQR-DVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQCGD 275

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARN 246
           +  A + FE M E+++VSWN M+ GYV+   +  A+K FQ +PE+NV+SW  ++SG+A+N
Sbjct: 276 VENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQN 335

Query: 247 GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMI 302
           G++ EA +LF  MP  NVV+WNAMIA Y Q GQ E A +LF +M     + N  ++  ++
Sbjct: 336 GQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVL 395

Query: 303 DGYVRIAKLD---EARRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV 358
                +A L+   EA  ++ +  ++ ++     ++  Y +   +++A ++FD++   D  
Sbjct: 396 PACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSA 455

Query: 359 CWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
             + MI GYA  G   E++ LF QM    +  D VT+  +++       +D+  + F+ M
Sbjct: 456 SLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIM 515

Query: 415 GK 416
            +
Sbjct: 516 TR 517



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/364 (31%), Positives = 189/364 (51%), Gaps = 49/364 (13%)

Query: 9   GNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKL 68
           G   S VF  N  +    K G +E A ++F +M Q++ V++N+MI+ Y +NG + DA KL
Sbjct: 192 GGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKL 251

Query: 69  FEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAR 128
           F+++P+R++++WN+M+AGY     V+ A ELF+KM   +L SW  MI  Y + G +++A 
Sbjct: 252 FQEIPKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAF 311

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
           +LF ++P + +   WNA+++G+A+ G   EA KL   MP  N+VSWN+M++GY++NG+  
Sbjct: 312 KLFQIMPER-NVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAE 370

Query: 189 LASKFFEAME---------------------------------------ERDVVSWNLML 209
            A K F  M+                                       + DV+  N ++
Sbjct: 371 NALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLV 430

Query: 210 DGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----V 265
             Y +   ++ A K F ++ +Q+  S   M+ GYA NG   E+  LF+QM    +    V
Sbjct: 431 GMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRV 490

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQ 320
            +  +++A    G ++E  + F  M     ++     +  MID   R    DEA  L+++
Sbjct: 491 TFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINK 550

Query: 321 MPYK 324
           MP K
Sbjct: 551 MPIK 554


>gi|147841850|emb|CAN67319.1| hypothetical protein VITISV_039344 [Vitis vinifera]
          Length = 761

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/573 (39%), Positives = 342/573 (59%), Gaps = 55/573 (9%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N  ++   + G  NEA+ L DAMP +NIV+WNSM++GY +  EM  A K F+ M +RDVV
Sbjct: 71  NKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEMPDRDVV 130

Query: 204 SWNLMLDGYVELDD--LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
           SWNLM+ GYV      ++     F ++PE++ VSW TM+SGY R+GRM EA +LFD M  
Sbjct: 131 SWNLMISGYVSCRGRWVEEGRHLFDEMPERDCVSWNTMISGYTRSGRMDEALQLFDSMQE 190

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL--- 318
           RNVV+WNAM+  ++Q G +E A   F+ MPER+  S + ++ G ++  +LDEA+R+L   
Sbjct: 191 RNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQNGELDEAKRILLTT 250

Query: 319 ----------------------------------DQMPY------------KNIAAQTAM 332
                                             DQ+P+            +N+ +  +M
Sbjct: 251 RRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVVSWNSM 310

Query: 333 ISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWN 392
           I  YV+ + +  A  +FD++   D + WN MI GY +   M+EA  LF++M N D +TWN
Sbjct: 311 IMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEMPNPDTLTWN 370

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
           +MI+G+AQ   ++ A  +F  +  ++N VSWN++I+G+  N  +  A +++  M  +G+K
Sbjct: 371 SMISGFAQKGNLELARALFATI-PQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEK 429

Query: 453 ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512
            D  TL+  LS C+  AAL LG QIH    K+  + D+ + NSLITMY++CG I  A  +
Sbjct: 430 PDRHTLSSVLSVCSGFAALHLGMQIHQQITKT-VIPDIPINNSLITMYSRCGAIVEARTI 488

Query: 513 FKDAD-PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
           F +     +VISWN++I GYA +G A +A++LFE M    V P  +TFI VL+AC+H G 
Sbjct: 489 FDEVKLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFISVLNACAHAGX 548

Query: 572 VDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           V  G   F+ M   + IEP +EH+A ++D++ R G+L+EA +++  M  +P+  +WG LL
Sbjct: 549 VKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINSMPFEPDKAVWGALL 608

Query: 632 GACRMHQNIKLGRIAVEKLSELEPQKTS-CYAL 663
           GACR+H N++L R+A E L +LEP+ ++ C+ L
Sbjct: 609 GACRVHNNVELARVAAEALMKLEPESSAPCHGL 641



 Score =  319 bits (817), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 193/572 (33%), Positives = 306/572 (53%), Gaps = 67/572 (11%)

Query: 44  KNTV-----TYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARE 98
           KN+V     T N  IS   +NGR+N+AR LF+ MPQRN+V+WNSMI GY+   ++ +AR+
Sbjct: 60  KNSVSLDLYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARK 119

Query: 99  LFDKMFRPDLFSWALMITCYT--RKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNY 156
           LFD+M   D+ SW LMI+ Y   R   +E+ R LFD +P + D   WN M++GY + G  
Sbjct: 120 LFDEMPDRDVVSWNLMISGYVSCRGRWVEEGRHLFDEMPER-DCVSWNTMISGYTRSGRM 178

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELD 216
           +EA +L D+M  +N+VSWN+M++G+ +NG++  A +FF  M ERD  S + ++ G ++  
Sbjct: 179 DEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQNG 238

Query: 217 DLDSAWKFFQKIPEQN------VVSWVTMLSGYARNGRMLEARRLFDQMPI--------- 261
           +LD A +       Q+      V ++  +L+GY +NGR+ +AR+LFDQ+P          
Sbjct: 239 ELDEAKRILLTTRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGG 298

Query: 262 ---RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
              RNVV+WN+MI  YV+   I  A  LF +M ER+ +SW TMI GYVR++ ++EA  L 
Sbjct: 299 RFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLF 358

Query: 319 DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
            +MP  +     +MISG+ Q   ++ A  +F  I   ++V WN MI GY   G    A  
Sbjct: 359 QEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGATE 418

Query: 379 LFRQM--------------------------------------VNKDIVTWNTMIAGYAQ 400
           L+RQM                                      V  DI   N++I  Y++
Sbjct: 419 LYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVIPDIPINNSLITMYSR 478

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
              + +A  IF+E+  ++  +SWNA+I G+  + F  DAL++F LM +   +  + T   
Sbjct: 479 CGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFIS 538

Query: 461 ALSACAHLAALQLGR-QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA-ELLFKDADP 518
            L+ACAH   ++ GR     +A + G    +    SL+ +  + G+++ A +L+      
Sbjct: 539 VLNACAHAGXVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINSMPFE 598

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVME 550
            D   W +L+    ++ N  E  ++  E +M+
Sbjct: 599 PDKAVWGALLGACRVHNN-VELARVAAEALMK 629



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 124/378 (32%), Positives = 218/378 (57%), Gaps = 25/378 (6%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHN 90
           VEE   +F +M +++ V++N+MIS Y ++GR+++A +LF+ M +RN+VSWN+M+ G+L N
Sbjct: 147 VEEGRHLFDEMPERDCVSWNTMISGYTRSGRMDEALQLFDSMQERNVVSWNAMVTGFLQN 206

Query: 91  DKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKED-----TACWNA 145
             V+ A E F +M   D  S + ++    + GEL++A+ +      ++D        +N 
Sbjct: 207 GDVERAIEFFMRMPERDSASLSALVAGLIQNGELDEAKRILLTTRRQDDDKGDLVHAYNI 266

Query: 146 MVAGYAKIGNYNEAKKLLDAMP------------SKNIVSWNSMLSGYTKNGEMHLASKF 193
           ++AGY + G  ++A++L D +P             +N+VSWNSM+  Y K  ++  A   
Sbjct: 267 LLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVL 326

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEAR 253
           F+ M+ERD +SWN M+ GYV + D++ AW  FQ++P  + ++W +M+SG+A+ G +  AR
Sbjct: 327 FDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQKGNLELAR 386

Query: 254 RLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PERNPVSWT-TMIDGYV 306
            LF  +P +N+V+WN+MIA Y   G  + A  L+ +M      P+R+ +S   ++  G+ 
Sbjct: 387 ALFATIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFA 446

Query: 307 RIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH-DVVCWNVMIK 365
            +    +  + + +    +I    ++I+ Y +   + EA  IFD++    +V+ WN MI 
Sbjct: 447 ALHLGMQIHQQITKTVIPDIPINNSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIG 506

Query: 366 GYAQCGRMDEAINLFRQM 383
           GYA  G   +A+ LF  M
Sbjct: 507 GYAFHGFAADALELFELM 524



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 115/413 (27%), Positives = 197/413 (47%), Gaps = 83/413 (20%)

Query: 10  NKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMS------------QKNTVTYNSMISAYA 57
           +KG  V   N  +   G++GRV++A ++F Q+             ++N V++NSMI  Y 
Sbjct: 256 DKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYV 315

Query: 58  KNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITC 117
           K   +  AR LF+QM +R+ +SWN+MI+GY+    ++EA  LF +M  PD  +W  MI+ 
Sbjct: 316 KARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISG 375

Query: 118 YTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------PSKNI 171
           + +KG LE AR LF  +P K +   WN+M+AGY   G+Y  A +L   M      P ++ 
Sbjct: 376 FAQKGNLELARALFATIPQK-NLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHT 434

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ 231
           +S  S+LS  +    +HL  +  + + +                            IP  
Sbjct: 435 LS--SVLSVCSGFAALHLGMQIHQQITK-----------------------TVIPDIPIN 469

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
           N  S +TM   Y+R G ++EAR +FD++ + + V++WNAMI  Y   G   +A  LF E+
Sbjct: 470 N--SLITM---YSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELF-EL 523

Query: 291 PER---NP--VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
            +R    P  +++ ++++       + E R     M +K++A +  +        R++  
Sbjct: 524 MKRLKVRPTYITFISVLNACAHAGXVKEGR-----MHFKSMACEFGI------EPRIEHF 572

Query: 346 NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAG 397
             + D +G H               G+++EA++L   M    D   W  ++  
Sbjct: 573 ASLVDIVGRH---------------GQLEEAMDLINSMPFEPDKAVWGALLGA 610


>gi|356528072|ref|XP_003532629.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/607 (37%), Positives = 351/607 (57%), Gaps = 53/607 (8%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N  ++   + G  +EA+ L D+M  ++ V+WNSM++GY    E+  A + F+ M  RDVV
Sbjct: 43  NKKISNLIRSGRLSEARALFDSMKHRDTVTWNSMITGYVHRREIARARQLFDEMPRRDVV 102

Query: 204 SWNLMLDGYVELDD---LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
           SWNL++ GY        ++   + F+ +P+++ VSW T++SGYA+NGRM +A +LF+ MP
Sbjct: 103 SWNLIVSGYFSCRGSRFVEEGRRLFELMPQRDCVSWNTVISGYAKNGRMDQALKLFNAMP 162

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLD-------- 312
            RN V+ NA+I  ++  G ++ A   F  MPE    S + +I G VR  +LD        
Sbjct: 163 ERNAVSSNALITGFLLNGDVDSAVDFFRTMPEHYSTSLSALISGLVRNGELDMAAGILCE 222

Query: 313 --------------------------EARRLLDQMP-------------YKNIAAQTAMI 333
                                     EARRL D +P              +N+ +  +M+
Sbjct: 223 CGNGDDDLVHAYNTLIAGYGQRGHVEEARRLFDGIPDDRGDGDEGQRRFRRNVVSWNSMM 282

Query: 334 SGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNT 393
             YV+   +  A ++FD++   D   WN MI GY Q   M+EA  LFR+M   D+++WN 
Sbjct: 283 MCYVKAGDIVSARELFDRMVEQDTCSWNTMISGYVQISNMEEASKLFREMPIPDVLSWNL 342

Query: 394 MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA 453
           +++G+AQ   ++ A   FE M   +N +SWN++I+G+ +NE +  A+++F  M  EG++ 
Sbjct: 343 IVSGFAQKGDLNLAKDFFERM-PLKNLISWNSIIAGYEKNEDYKGAIQLFSRMQFEGERP 401

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
           D  TL+  +S C  L  L LG+QIH L  K   + D  + NSLITMY++CG I +A  +F
Sbjct: 402 DRHTLSSVMSVCTGLVNLYLGKQIHQLVTKI-VIPDSPINNSLITMYSRCGAIVDACTVF 460

Query: 514 KDADPV-DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
            +     DVI+WN++I GYA +G A EA++LF+ M    + P  +TFI V++AC+H GLV
Sbjct: 461 NEIKLYKDVITWNAMIGGYASHGLAAEALELFKLMKRLKIHPTYITFISVMNACAHAGLV 520

Query: 573 DGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLG 632
           + G + F+ M   Y IE  VEH+A ++D+L R G+L EA +++  M  KP+  +WG LL 
Sbjct: 521 EEGRRQFKSMINDYGIERRVEHFASLVDILGRQGQLQEAMDLINTMPFKPDKAVWGALLS 580

Query: 633 ACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQ 692
           ACR+H N++L  +A + L  LEP+ ++ Y LL N++A  G+WD+ E VRV ME    +KQ
Sbjct: 581 ACRVHNNVELALVAADALIRLEPESSAPYVLLYNIYANLGQWDDAESVRVLMEEKNVKKQ 640

Query: 693 PGCSWIE 699
            G SW++
Sbjct: 641 AGYSWVD 647



 Score =  268 bits (684), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 161/560 (28%), Positives = 294/560 (52%), Gaps = 29/560 (5%)

Query: 10  NKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLF 69
           N  S +   NKKI+ L +SGR+ EA  +F  M  ++TVT+NSMI+ Y     +  AR+LF
Sbjct: 34  NNSSPLNRSNKKISNLIRSGRLSEARALFDSMKHRDTVTWNSMITGYVHRREIARARQLF 93

Query: 70  EQMPQRNLVSWNSMIAGYLH---NDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEK 126
           ++MP+R++VSWN +++GY     +  V+E R LF+ M + D  SW  +I+ Y + G +++
Sbjct: 94  DEMPRRDVVSWNLIVSGYFSCRGSRFVEEGRRLFELMPQRDCVSWNTVISGYAKNGRMDQ 153

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           A +LF+ +P +   +  NA++ G+   G+ + A      MP     S ++++SG  +NGE
Sbjct: 154 ALKLFNAMPERNAVSS-NALITGFLLNGDVDSAVDFFRTMPEHYSTSLSALISGLVRNGE 212

Query: 187 MHLASKFFEAMEERD---VVSWNLMLDGYVELDDLDSAWKFFQKIPE------------- 230
           + +A+         D   V ++N ++ GY +   ++ A + F  IP+             
Sbjct: 213 LDMAAGILCECGNGDDDLVHAYNTLIAGYGQRGHVEEARRLFDGIPDDRGDGDEGQRRFR 272

Query: 231 QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
           +NVVSW +M+  Y + G ++ AR LFD+M  ++  +WN MI+ YVQ   +EEA++LF EM
Sbjct: 273 RNVVSWNSMMMCYVKAGDIVSARELFDRMVEQDTCSWNTMISGYVQISNMEEASKLFREM 332

Query: 291 PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD 350
           P  + +SW  ++ G+ +   L+ A+   ++MP KN+ +  ++I+GY +N+    A Q+F 
Sbjct: 333 PIPDVLSWNLIVSGFAQKGDLNLAKDFFERMPLKNLISWNSIIAGYEKNEDYKGAIQLFS 392

Query: 351 KI-------GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQ 403
           ++         H +     +  G        +   L  ++V  D    N++I  Y++   
Sbjct: 393 RMQFEGERPDRHTLSSVMSVCTGLVNLYLGKQIHQLVTKIVIPDSPINNSLITMYSRCGA 452

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS 463
           + DA  +F E+   ++ ++WNA+I G+  +    +AL++F LM +      + T    ++
Sbjct: 453 IVDACTVFNEIKLYKDVITWNAMIGGYASHGLAAEALELFKLMKRLKIHPTYITFISVMN 512

Query: 464 ACAHLAALQLG-RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA-ELLFKDADPVDV 521
           ACAH   ++ G RQ   +    G    +    SL+ +  + G++Q A +L+       D 
Sbjct: 513 ACAHAGLVEEGRRQFKSMINDYGIERRVEHFASLVDILGRQGQLQEAMDLINTMPFKPDK 572

Query: 522 ISWNSLIAGYAINGNATEAI 541
             W +L++   ++ N   A+
Sbjct: 573 AVWGALLSACRVHNNVELAL 592


>gi|297837203|ref|XP_002886483.1| hypothetical protein ARALYDRAFT_338156 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332324|gb|EFH62742.1| hypothetical protein ARALYDRAFT_338156 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1243

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/603 (36%), Positives = 353/603 (58%), Gaps = 59/603 (9%)

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV 213
           G   EA+++ + + ++NIV+WN+M+SGY K  EM  A K F+ M ERDVV+WN M+ GYV
Sbjct: 398 GYIAEAREIFEKLEARNIVTWNTMISGYVKRREMTQARKLFDEMPERDVVTWNAMISGYV 457

Query: 214 E---LDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAM 270
               +  L+ A K F ++P ++  SW TM+SGYA+N R+ EA  LF++MP RN V+W+AM
Sbjct: 458 SCGGIRFLEEARKLFDEMPSRDSFSWNTMISGYAKNRRISEALLLFEKMPERNAVSWSAM 517

Query: 271 IAAYVQRGQIEEAARLFIEMPERNPVS--------------------------------- 297
           I  +   G++  A  LF  MP ++  S                                 
Sbjct: 518 ITGFCHNGEVNRAFDLFRRMPVKDSSSLCALVAGLIKNERLEEAAWVLGQYGSLDSGRED 577

Query: 298 ----WTTMIDGYVRIAKLDEARRLLDQMP----------------YKNIAAQTAMISGYV 337
               + T+I GY +  +++ AR L DQ+P                 +N+ +  +MI  Y+
Sbjct: 578 LVYAYNTLIVGYGQRGQVEAARCLFDQIPDLCDDDDHGGAFRERFRRNVVSWNSMIKAYL 637

Query: 338 QNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAG 397
           +   +  A  +FD++   D + WN MI GY    RMD+A  LF +M N+D  +WN M++G
Sbjct: 638 KVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMDDAFALFSEMPNRDAHSWNMMVSG 697

Query: 398 YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHST 457
           YA +  ++ A   FE+  ++ N VSWN++I+ + +N+ + +A+ +F+ M  +G+K D  T
Sbjct: 698 YASVGNLELARHYFEKTPEK-NIVSWNSIIAAYDKNKDYKEAVDVFIRMNIDGEKPDPHT 756

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD 517
           L   LS    L  L+LG Q+H + +K+  + D+ V N+LITMY++CG I  +  +F +  
Sbjct: 757 LTSLLSVSTGLVNLRLGMQMHQIVVKT-VIPDVPVHNALITMYSRCGEIMESRRIFDEMK 815

Query: 518 -PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGL 576
              +VI+WN++I GYA +GNA+EA+ LF  M   G+ P  +TF+ VL+AC+H GLVD   
Sbjct: 816 LKREVITWNAIIGGYAFHGNASEALNLFWSMKCYGIHPSHITFVSVLNACAHAGLVDEAK 875

Query: 577 KLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRM 636
           + F  M  VY IEP +EHY+ +++++S  G+ +EA  ++K M  +P+  +WG LL ACR+
Sbjct: 876 EQFLSMMSVYKIEPQMEHYSSLVNVISGQGQFEEAMYVIKSMPFEPDKTVWGALLDACRI 935

Query: 637 HQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCS 696
           + N+ L  +A E +S LEP+ ++ Y LL NM+A+ G WDE  +VR++ME    +K+ G S
Sbjct: 936 YNNVGLAHVAAEAMSRLEPESSTPYVLLYNMYADMGLWDEASQVRMNMESKRIKKERGSS 995

Query: 697 WIE 699
           W++
Sbjct: 996 WVD 998



 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 154/481 (32%), Positives = 259/481 (53%), Gaps = 33/481 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           NK++ Q+ +SG + EA +IF ++  +N VT+N+MIS Y K   +  ARKLF++MP+R++V
Sbjct: 388 NKELNQMIRSGYIAEAREIFEKLEARNIVTWNTMISGYVKRREMTQARKLFDEMPERDVV 447

Query: 79  SWNSMIAGYLHNDKVK---EARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           +WN+MI+GY+    ++   EAR+LFD+M   D FSW  MI+ Y +   + +A  LF+ +P
Sbjct: 448 TWNAMISGYVSCGGIRFLEEARKLFDEMPSRDSFSWNTMISGYAKNRRISEALLLFEKMP 507

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF-- 193
            + +   W+AM+ G+   G  N A  L   MP K+  S  ++++G  KN  +  A+    
Sbjct: 508 ER-NAVSWSAMITGFCHNGEVNRAFDLFRRMPVKDSSSLCALVAGLIKNERLEEAAWVLG 566

Query: 194 ----FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPE----------------QNV 233
                ++  E  V ++N ++ GY +   +++A   F +IP+                +NV
Sbjct: 567 QYGSLDSGREDLVYAYNTLIVGYGQRGQVEAARCLFDQIPDLCDDDDHGGAFRERFRRNV 626

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           VSW +M+  Y + G ++ AR LFDQM  R+ ++WN MI  YV   ++++A  LF EMP R
Sbjct: 627 VSWNSMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMDDAFALFSEMPNR 686

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF---- 349
           +  SW  M+ GY  +  L+ AR   ++ P KNI +  ++I+ Y +NK   EA  +F    
Sbjct: 687 DAHSWNMMVSGYASVGNLELARHYFEKTPEKNIVSWNSIIAAYDKNKDYKEAVDVFIRMN 746

Query: 350 ---DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDD 406
              +K   H +     +  G        +   +  + V  D+   N +I  Y++  ++ +
Sbjct: 747 IDGEKPDPHTLTSLLSVSTGLVNLRLGMQMHQIVVKTVIPDVPVHNALITMYSRCGEIME 806

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
           + +IF+EM  +R  ++WNA+I G+  +    +AL +F  M   G    H T    L+ACA
Sbjct: 807 SRRIFDEMKLKREVITWNAIIGGYAFHGNASEALNLFWSMKCYGIHPSHITFVSVLNACA 866

Query: 467 H 467
           H
Sbjct: 867 H 867



 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 153/493 (31%), Positives = 260/493 (52%), Gaps = 54/493 (10%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHN 90
           +EEA K+F +M  +++ ++N+MIS YAKN R+++A  LFE+MP+RN VSW++MI G+ HN
Sbjct: 465 LEEARKLFDEMPSRDSFSWNTMISGYAKNRRISEALLLFEKMPERNAVSWSAMITGFCHN 524

Query: 91  DKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF----DLLPNKEDTA-CWNA 145
            +V  A +LF +M   D  S   ++    +   LE+A  +      L   +ED    +N 
Sbjct: 525 GEVNRAFDLFRRMPVKDSSSLCALVAGLIKNERLEEAAWVLGQYGSLDSGREDLVYAYNT 584

Query: 146 MVAGYAKIGNYNEAKKLLDAMPS----------------KNIVSWNSMLSGYTKNGEMHL 189
           ++ GY + G    A+ L D +P                 +N+VSWNSM+  Y K G++  
Sbjct: 585 LIVGYGQRGQVEAARCLFDQIPDLCDDDDHGGAFRERFRRNVVSWNSMIKAYLKVGDVVS 644

Query: 190 ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRM 249
           A   F+ M++RD +SWN M+DGYV +  +D A+  F ++P ++  SW  M+SGYA  G +
Sbjct: 645 ARLLFDQMKDRDTISWNTMIDGYVHVSRMDDAFALFSEMPNRDAHSWNMMVSGYASVGNL 704

Query: 250 LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMID-- 303
             AR  F++ P +N+V+WN++IAAY +    +EA  +FI M     + +P + T+++   
Sbjct: 705 ELARHYFEKTPEKNIVSWNSIIAAYDKNKDYKEAVDVFIRMNIDGEKPDPHTLTSLLSVS 764

Query: 304 -GYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG-THDVVCWN 361
            G V +    +  +++ +    ++    A+I+ Y +   + E+ +IFD++    +V+ WN
Sbjct: 765 TGLVNLRLGMQMHQIVVKTVIPDVPVHNALITMYSRCGEIMESRRIFDEMKLKREVITWN 824

Query: 362 VMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM--- 414
            +I GYA  G   EA+NLF  M    ++   +T+ +++   A    +D+A + F  M   
Sbjct: 825 AIIGGYAFHGNASEALNLFWSMKCYGIHPSHITFVSVLNACAHAGLVDEAKEQFLSMMSV 884

Query: 415 ----GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC----- 465
                +  +  S   +ISG  Q +F  +A+ +   M  E    D +     L AC     
Sbjct: 885 YKIEPQMEHYSSLVNVISG--QGQFE-EAMYVIKSMPFE---PDKTVWGALLDACRIYNN 938

Query: 466 ---AHLAALQLGR 475
              AH+AA  + R
Sbjct: 939 VGLAHVAAEAMSR 951



 Score =  186 bits (471), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 124/467 (26%), Positives = 230/467 (49%), Gaps = 50/467 (10%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F+ N  I+   K+ R+ EA+ +F +M ++N V++++MI+ +  NG VN A  LF +MP +
Sbjct: 481 FSWNTMISGYAKNRRISEALLLFEKMPERNAVSWSAMITGFCHNGEVNRAFDLFRRMPVK 540

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDL-FSWALMITCYTRKGELEKARE 129
           +  S  +++AG + N++++EA  +  +       R DL +++  +I  Y ++G++E AR 
Sbjct: 541 DSSSLCALVAGLIKNERLEEAAWVLGQYGSLDSGREDLVYAYNTLIVGYGQRGQVEAARC 600

Query: 130 LFDLLPN---------------KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSW 174
           LFD +P+               + +   WN+M+  Y K+G+   A+ L D M  ++ +SW
Sbjct: 601 LFDQIPDLCDDDDHGGAFRERFRRNVVSWNSMIKAYLKVGDVVSARLLFDQMKDRDTISW 660

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
           N+M+ GY     M  A   F  M  RD  SWN+M+ GY  + +L+ A  +F+K PE+N+V
Sbjct: 661 NTMIDGYVHVSRMDDAFALFSEMPNRDAHSWNMMVSGYASVGNLELARHYFEKTPEKNIV 720

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE-- 292
           SW ++++ Y +N    EA  +F +M I         + + +         RL ++M +  
Sbjct: 721 SWNSIIAAYDKNKDYKEAVDVFIRMNIDGEKPDPHTLTSLLSVSTGLVNLRLGMQMHQIV 780

Query: 293 ------RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN-IAAQTAMISGYVQNKRMDEA 345
                   PV    +I  Y R  ++ E+RR+ D+M  K  +    A+I GY  +    EA
Sbjct: 781 VKTVIPDVPVH-NALITMYSRCGEIMESRRIFDEMKLKREVITWNAIIGGYAFHGNASEA 839

Query: 346 NQIFDKIGTHDV----VCWNVMIKGYAQCGRMDEAINLFRQM-----VNKDIVTWNTMIA 396
             +F  +  + +    + +  ++   A  G +DEA   F  M     +   +  +++++ 
Sbjct: 840 LNLFWSMKCYGIHPSHITFVSVLNACAHAGLVDEAKEQFLSMMSVYKIEPQMEHYSSLVN 899

Query: 397 GYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
             +   Q ++A+ + + M    +   W AL          LDA +I+
Sbjct: 900 VISGQGQFEEAMYVIKSMPFEPDKTVWGAL----------LDACRIY 936



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 148/294 (50%), Gaps = 26/294 (8%)

Query: 275 VQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMIS 334
           ++ G I EA  +F ++  RN V+W TMI GYV+  ++ +AR+L D+MP +++    AMIS
Sbjct: 395 IRSGYIAEAREIFEKLEARNIVTWNTMISGYVKRREMTQARKLFDEMPERDVVTWNAMIS 454

Query: 335 GYVQN---KRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTW 391
           GYV     + ++EA ++FD++ + D   WN MI GYA+  R+ EA+ LF +M  ++ V+W
Sbjct: 455 GYVSCGGIRFLEEARKLFDEMPSRDSFSWNTMISGYAKNRRISEALLLFEKMPERNAVSW 514

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF-------- 443
           + MI G+    +++ A  +F  M   +++ S  AL++G ++NE   +A  +         
Sbjct: 515 SAMITGFCHNGEVNRAFDLFRRM-PVKDSSSLCALVAGLIKNERLEEAAWVLGQYGSLDS 573

Query: 444 ----------VLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG 493
                      L+   G++       C       L         H  A +  +  ++   
Sbjct: 574 GREDLVYAYNTLIVGYGQRGQVEAARCLFDQIPDLC----DDDDHGGAFRERFRRNVVSW 629

Query: 494 NSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
           NS+I  Y K G + +A LLF      D ISWN++I GY       +A  LF EM
Sbjct: 630 NSMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMDDAFALFSEM 683



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/351 (30%), Positives = 166/351 (47%), Gaps = 59/351 (16%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMS----------------QKNTVTYNSMISAYAK 58
           V+  N  I   G+ G+VE A  +F Q+                 ++N V++NSMI AY K
Sbjct: 579 VYAYNTLIVGYGQRGQVEAARCLFDQIPDLCDDDDHGGAFRERFRRNVVSWNSMIKAYLK 638

Query: 59  NGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCY 118
            G V  AR LF+QM  R+ +SWN+MI GY+H  ++ +A  LF +M   D  SW +M++ Y
Sbjct: 639 VGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMDDAFALFSEMPNRDAHSWNMMVSGY 698

Query: 119 TRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------PSKNIV 172
              G LE AR  F+  P K +   WN+++A Y K  +Y EA  +   M      P  + +
Sbjct: 699 ASVGNLELARHYFEKTPEK-NIVSWNSIIAAYDKNKDYKEAVDVFIRMNIDGEKPDPHTL 757

Query: 173 SWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQN 232
           +  S+LS  T    + L       M+   +V   ++ D                 +P  N
Sbjct: 758 T--SLLSVSTGLVNLRL------GMQMHQIVVKTVIPD-----------------VPVHN 792

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
            +  +TM   Y+R G ++E+RR+FD+M + R V+ WNA+I  Y   G   EA  LF  M 
Sbjct: 793 AL--ITM---YSRCGEIMESRRIFDEMKLKREVITWNAIIGGYAFHGNASEALNLFWSMK 847

Query: 292 ----ERNPVSWTTMIDGYVRIAKLDEAR-RLLDQMPYKNIAAQTAMISGYV 337
                 + +++ ++++       +DEA+ + L  M    I  Q    S  V
Sbjct: 848 CYGIHPSHITFVSVLNACAHAGLVDEAKEQFLSMMSVYKIEPQMEHYSSLV 898



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 91/198 (45%), Gaps = 13/198 (6%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMS-QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRN 76
            N  IT   + G + E+ +IF +M  ++  +T+N++I  YA +G  ++A  LF  M    
Sbjct: 791 HNALITMYSRCGEIMESRRIFDEMKLKREVITWNAIIGGYAFHGNASEALNLFWSMKCYG 850

Query: 77  L----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKA 127
           +    +++ S++    H   V EA+E F  M       P +  ++ ++   + +G+ E+A
Sbjct: 851 IHPSHITFVSVLNACAHAGLVDEAKEQFLSMMSVYKIEPQMEHYSSLVNVISGQGQFEEA 910

Query: 128 RELFDLLPNKEDTACWNAMVAG---YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
             +   +P + D   W A++     Y  +G  + A + +  +  ++   +  + + Y   
Sbjct: 911 MYVIKSMPFEPDKTVWGALLDACRIYNNVGLAHVAAEAMSRLEPESSTPYVLLYNMYADM 970

Query: 185 GEMHLASKFFEAMEERDV 202
           G    AS+    ME + +
Sbjct: 971 GLWDEASQVRMNMESKRI 988



 Score = 45.4 bits (106), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 8/134 (5%)

Query: 502 KCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIG 561
           + G I  A  +F+  +  ++++WN++I+GY      T+A KLF+EM    V        G
Sbjct: 396 RSGYIAEAREIFEKLEARNIVTWNTMISGYVKRREMTQARKLFDEMPERDVVTWNAMISG 455

Query: 562 VLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIK 621
            +S C  +  ++   KLF+ M    +       +  MI   ++  R+ EA  + + M  +
Sbjct: 456 YVS-CGGIRFLEEARKLFDEMPSRDSFS-----WNTMISGYAKNRRISEALLLFEKMPER 509

Query: 622 PNAGIWGTLL-GAC 634
            NA  W  ++ G C
Sbjct: 510 -NAVSWSAMITGFC 522


>gi|15220741|ref|NP_176416.1| mitochondrial editing factor 9 [Arabidopsis thaliana]
 gi|75097094|sp|O04590.1|PPR88_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62260, mitochondrial; Flags: Precursor
 gi|2160154|gb|AAB60776.1| F19K23.18 gene product [Arabidopsis thaliana]
 gi|332195821|gb|AEE33942.1| mitochondrial editing factor 9 [Arabidopsis thaliana]
          Length = 656

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/602 (36%), Positives = 356/602 (59%), Gaps = 58/602 (9%)

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV 213
           G   EA+ + + + ++N V+WN+M+SGY K  EM+ A K F+ M +RDVV+WN M+ GYV
Sbjct: 54  GYIAEARDIFEKLEARNTVTWNTMISGYVKRREMNQARKLFDVMPKRDVVTWNTMISGYV 113

Query: 214 E---LDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAM 270
               +  L+ A K F ++P ++  SW TM+SGYA+N R+ EA  LF++MP RN V+W+AM
Sbjct: 114 SCGGIRFLEEARKLFDEMPSRDSFSWNTMISGYAKNRRIGEALLLFEKMPERNAVSWSAM 173

Query: 271 IAAYVQRGQIEEAARLFIEMP--ERNPV-------------------------------- 296
           I  + Q G+++ A  LF +MP  + +P+                                
Sbjct: 174 ITGFCQNGEVDSAVVLFRKMPVKDSSPLCALVAGLIKNERLSEAAWVLGQYGSLVSGRED 233

Query: 297 ---SWTTMIDGYVRIAKLDEARRLLDQMP---------------YKNIAAQTAMISGYVQ 338
              ++ T+I GY +  +++ AR L DQ+P                KN+ +  +MI  Y++
Sbjct: 234 LVYAYNTLIVGYGQRGQVEAARCLFDQIPDLCGDDHGGEFRERFCKNVVSWNSMIKAYLK 293

Query: 339 NKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGY 398
              +  A  +FD++   D + WN MI GY    RM++A  LF +M N+D  +WN M++GY
Sbjct: 294 VGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMEDAFALFSEMPNRDAHSWNMMVSGY 353

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           A +  ++ A   FE+  ++ +TVSWN++I+ + +N+ + +A+ +F+ M  EG+K D  TL
Sbjct: 354 ASVGNVELARHYFEKTPEK-HTVSWNSIIAAYEKNKDYKEAVDLFIRMNIEGEKPDPHTL 412

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD- 517
              LSA   L  L+LG Q+H + +K+  + D+ V N+LITMY++CG I  +  +F +   
Sbjct: 413 TSLLSASTGLVNLRLGMQMHQIVVKT-VIPDVPVHNALITMYSRCGEIMESRRIFDEMKL 471

Query: 518 PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLK 577
             +VI+WN++I GYA +GNA+EA+ LF  M   G+ P  +TF+ VL+AC+H GLVD    
Sbjct: 472 KREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNACAHAGLVDEAKA 531

Query: 578 LFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMH 637
            F  M  VY IEP +EHY+ ++++ S  G+ +EA  ++  M  +P+  +WG LL ACR++
Sbjct: 532 QFVSMMSVYKIEPQMEHYSSLVNVTSGQGQFEEAMYIITSMPFEPDKTVWGALLDACRIY 591

Query: 638 QNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSW 697
            N+ L  +A E +S LEP+ ++ Y LL NM+A+ G WDE  +VR++ME    +K+ G SW
Sbjct: 592 NNVGLAHVAAEAMSRLEPESSTPYVLLYNMYADMGLWDEASQVRMNMESKRIKKERGSSW 651

Query: 698 IE 699
           ++
Sbjct: 652 VD 653



 Score =  266 bits (679), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 152/480 (31%), Positives = 259/480 (53%), Gaps = 32/480 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           NK++ Q+ +SG + EA  IF ++  +NTVT+N+MIS Y K   +N ARKLF+ MP+R++V
Sbjct: 44  NKELNQMIRSGYIAEARDIFEKLEARNTVTWNTMISGYVKRREMNQARKLFDVMPKRDVV 103

Query: 79  SWNSMIAGYLHNDKVK---EARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           +WN+MI+GY+    ++   EAR+LFD+M   D FSW  MI+ Y +   + +A  LF+ +P
Sbjct: 104 TWNTMISGYVSCGGIRFLEEARKLFDEMPSRDSFSWNTMISGYAKNRRIGEALLLFEKMP 163

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS---- 191
            + +   W+AM+ G+ + G  + A  L   MP K+     ++++G  KN  +  A+    
Sbjct: 164 ER-NAVSWSAMITGFCQNGEVDSAVVLFRKMPVKDSSPLCALVAGLIKNERLSEAAWVLG 222

Query: 192 KFFEAMEERD--VVSWNLMLDGYVELDDLDSAWKFFQKIPE---------------QNVV 234
           ++   +  R+  V ++N ++ GY +   +++A   F +IP+               +NVV
Sbjct: 223 QYGSLVSGREDLVYAYNTLIVGYGQRGQVEAARCLFDQIPDLCGDDHGGEFRERFCKNVV 282

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
           SW +M+  Y + G ++ AR LFDQM  R+ ++WN MI  YV   ++E+A  LF EMP R+
Sbjct: 283 SWNSMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMEDAFALFSEMPNRD 342

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF----- 349
             SW  M+ GY  +  ++ AR   ++ P K+  +  ++I+ Y +NK   EA  +F     
Sbjct: 343 AHSWNMMVSGYASVGNVELARHYFEKTPEKHTVSWNSIIAAYEKNKDYKEAVDLFIRMNI 402

Query: 350 --DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDA 407
             +K   H +        G        +   +  + V  D+   N +I  Y++  ++ ++
Sbjct: 403 EGEKPDPHTLTSLLSASTGLVNLRLGMQMHQIVVKTVIPDVPVHNALITMYSRCGEIMES 462

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
            +IF+EM  +R  ++WNA+I G+  +    +AL +F  M   G    H T    L+ACAH
Sbjct: 463 RRIFDEMKLKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSVLNACAH 522



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/466 (26%), Positives = 228/466 (48%), Gaps = 49/466 (10%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F+ N  I+   K+ R+ EA+ +F +M ++N V++++MI+ + +NG V+ A  LF +MP +
Sbjct: 137 FSWNTMISGYAKNRRIGEALLLFEKMPERNAVSWSAMITGFCQNGEVDSAVVLFRKMPVK 196

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDL-FSWALMITCYTRKGELEKARE 129
           +     +++AG + N+++ EA  +  +       R DL +++  +I  Y ++G++E AR 
Sbjct: 197 DSSPLCALVAGLIKNERLSEAAWVLGQYGSLVSGREDLVYAYNTLIVGYGQRGQVEAARC 256

Query: 130 LFDLLPNK--------------EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN 175
           LFD +P+               ++   WN+M+  Y K+G+   A+ L D M  ++ +SWN
Sbjct: 257 LFDQIPDLCGDDHGGEFRERFCKNVVSWNSMIKAYLKVGDVVSARLLFDQMKDRDTISWN 316

Query: 176 SMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
           +M+ GY     M  A   F  M  RD  SWN+M+ GY  + +++ A  +F+K PE++ VS
Sbjct: 317 TMIDGYVHVSRMEDAFALFSEMPNRDAHSWNMMVSGYASVGNVELARHYFEKTPEKHTVS 376

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE--- 292
           W ++++ Y +N    EA  LF +M I         + + +         RL ++M +   
Sbjct: 377 WNSIIAAYEKNKDYKEAVDLFIRMNIEGEKPDPHTLTSLLSASTGLVNLRLGMQMHQIVV 436

Query: 293 -----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMDEAN 346
                  PV    +I  Y R  ++ E+RR+ D+M  K  +    AMI GY  +    EA 
Sbjct: 437 KTVIPDVPVH-NALITMYSRCGEIMESRRIFDEMKLKREVITWNAMIGGYAFHGNASEAL 495

Query: 347 QIFDKIGTHDV----VCWNVMIKGYAQCGRMDEAINLFRQM-----VNKDIVTWNTMIAG 397
            +F  + ++ +    + +  ++   A  G +DEA   F  M     +   +  +++++  
Sbjct: 496 NLFGSMKSNGIYPSHITFVSVLNACAHAGLVDEAKAQFVSMMSVYKIEPQMEHYSSLVNV 555

Query: 398 YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
            +   Q ++A+ I   M    +   W AL          LDA +I+
Sbjct: 556 TSGQGQFEEAMYIITSMPFEPDKTVWGAL----------LDACRIY 591



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 117/397 (29%), Positives = 196/397 (49%), Gaps = 29/397 (7%)

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           A N  +   ++ G I EA  +F ++  RN V+W TMI GYV+  ++++AR+L D MP ++
Sbjct: 42  ATNKELNQMIRSGYIAEARDIFEKLEARNTVTWNTMISGYVKRREMNQARKLFDVMPKRD 101

Query: 326 IAAQTAMISGYVQN---KRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
           +     MISGYV     + ++EA ++FD++ + D   WN MI GYA+  R+ EA+ LF +
Sbjct: 102 VVTWNTMISGYVSCGGIRFLEEARKLFDEMPSRDSFSWNTMISGYAKNRRIGEALLLFEK 161

Query: 383 MVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI 442
           M  ++ V+W+ MI G+ Q  ++D AV +F +M   +++    AL++G ++NE   +A  +
Sbjct: 162 MPERNAVSWSAMITGFCQNGEVDSAVVLFRKM-PVKDSSPLCALVAGLIKNERLSEAAWV 220

Query: 443 F-----VLMTQEGKKADHSTLACALSACAHL-AALQLGRQI-------HHLAIKSGYVND 489
                 ++  +E     ++TL         + AA  L  QI       H    +  +  +
Sbjct: 221 LGQYGSLVSGREDLVYAYNTLIVGYGQRGQVEAARCLFDQIPDLCGDDHGGEFRERFCKN 280

Query: 490 LFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549
           +   NS+I  Y K G + +A LLF      D ISWN++I GY       +A  LF EM  
Sbjct: 281 VVSWNSMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMEDAFALFSEMPN 340

Query: 550 EGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLD 609
                D  ++  ++S  + VG V+     FE   E + +      +  +I    +     
Sbjct: 341 R----DAHSWNMMVSGYASVGNVELARHYFEKTPEKHTVS-----WNSIIAAYEKNKDYK 391

Query: 610 EAFEMVKGMKI---KPNAGIWGTLLGACRMHQNIKLG 643
           EA ++   M I   KP+     +LL A     N++LG
Sbjct: 392 EAVDLFIRMNIEGEKPDPHTLTSLLSASTGLVNLRLG 428



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 108/357 (30%), Positives = 168/357 (47%), Gaps = 58/357 (16%)

Query: 8   IGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQ---------------KNTVTYNSM 52
           +  +   V+  N  I   G+ G+VE A  +F Q+                 KN V++NSM
Sbjct: 228 VSGREDLVYAYNTLIVGYGQRGQVEAARCLFDQIPDLCGDDHGGEFRERFCKNVVSWNSM 287

Query: 53  ISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWA 112
           I AY K G V  AR LF+QM  R+ +SWN+MI GY+H  ++++A  LF +M   D  SW 
Sbjct: 288 IKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMEDAFALFSEMPNRDAHSWN 347

Query: 113 LMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------ 166
           +M++ Y   G +E AR  F+  P K  T  WN+++A Y K  +Y EA  L   M      
Sbjct: 348 MMVSGYASVGNVELARHYFEKTPEKH-TVSWNSIIAAYEKNKDYKEAVDLFIRMNIEGEK 406

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
           P  + ++  S+LS  T    + L       M+   +V   ++ D                
Sbjct: 407 PDPHTLT--SLLSASTGLVNLRL------GMQMHQIVVKTVIPD---------------- 442

Query: 227 KIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQIEEAAR 285
            +P  N +  +TM   Y+R G ++E+RR+FD+M + R V+ WNAMI  Y   G   EA  
Sbjct: 443 -VPVHNAL--ITM---YSRCGEIMESRRIFDEMKLKREVITWNAMIGGYAFHGNASEALN 496

Query: 286 LFIEMPER----NPVSWTTMIDGYVRIAKLDEAR-RLLDQMPYKNIAAQTAMISGYV 337
           LF  M       + +++ ++++       +DEA+ + +  M    I  Q    S  V
Sbjct: 497 LFGSMKSNGIYPSHITFVSVLNACAHAGLVDEAKAQFVSMMSVYKIEPQMEHYSSLV 553



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 90/198 (45%), Gaps = 13/198 (6%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMS-QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRN 76
            N  IT   + G + E+ +IF +M  ++  +T+N+MI  YA +G  ++A  LF  M    
Sbjct: 446 HNALITMYSRCGEIMESRRIFDEMKLKREVITWNAMIGGYAFHGNASEALNLFGSMKSNG 505

Query: 77  L----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKA 127
           +    +++ S++    H   V EA+  F  M       P +  ++ ++   + +G+ E+A
Sbjct: 506 IYPSHITFVSVLNACAHAGLVDEAKAQFVSMMSVYKIEPQMEHYSSLVNVTSGQGQFEEA 565

Query: 128 RELFDLLPNKEDTACWNAMVAG---YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
             +   +P + D   W A++     Y  +G  + A + +  +  ++   +  + + Y   
Sbjct: 566 MYIITSMPFEPDKTVWGALLDACRIYNNVGLAHVAAEAMSRLEPESSTPYVLLYNMYADM 625

Query: 185 GEMHLASKFFEAMEERDV 202
           G    AS+    ME + +
Sbjct: 626 GLWDEASQVRMNMESKRI 643


>gi|242092520|ref|XP_002436750.1| hypothetical protein SORBIDRAFT_10g008110 [Sorghum bicolor]
 gi|241914973|gb|EER88117.1| hypothetical protein SORBIDRAFT_10g008110 [Sorghum bicolor]
          Length = 672

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/644 (35%), Positives = 360/644 (55%), Gaps = 67/644 (10%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N  + G  + G ++ A++L DA+P++++V+WNS L+  ++  ++  A  FF+AM  RD++
Sbjct: 40  NRSLMGLLRRGRFSAARRLFDALPARSVVTWNSFLAALSRRRDVRAARSFFDAMPMRDII 99

Query: 204 SWNLMLDGY---VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
           SWN +L  Y   ++ D L +A + F ++P+++ VSW T+L  Y R G M EA+RLFD+MP
Sbjct: 100 SWNTLLAAYARSLQPDHLAAARRLFDEMPQRDAVSWSTLLGAYTRRGLMEEAQRLFDEMP 159

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVR------------- 307
            RN  +WN M+  +   GQ+ +A  +F  MP ++  S + M+ G++R             
Sbjct: 160 HRNPASWNTMVTGFFAIGQMRKALNVFEAMPVKDSASLSAMVSGFIRNGWLHEADELLTK 219

Query: 308 -----------------------IAKLDEARRLLDQMPY--------------KNIAAQT 330
                                    ++ +ARRL   +P               +N+ +  
Sbjct: 220 RLRAMDMDKAVDAFNTLIAAYGQTGRVTDARRLFSMIPKTQSQHKGHKRRVFERNVVSWN 279

Query: 331 AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
           +M+  Y++   +  A  +FD++   D+V WN MI GY Q   M+EA  LF ++   D VT
Sbjct: 280 SMMMCYIRTGDVCSARALFDEMPFKDLVTWNTMIAGYTQASDMEEAEKLFGEVPAPDAVT 339

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
           WN MI G+ Q   ++ A   F+ M + ++T++WN +ISG+ QNE +   +K+F  M    
Sbjct: 340 WNLMIRGFTQKGDVEHARGFFDRMPE-QSTITWNTMISGYEQNEDYDCTIKLFQRM---- 394

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
                  L   L+ACA LA L+LG Q+H L I+  ++ D    N+L+TMY++CG + +A+
Sbjct: 395 -------LEVVLAACASLAMLRLGAQLHQL-IEKSFLPDTATNNALMTMYSRCGELTSAK 446

Query: 511 LLFKDADPV-DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
            +F       D++SWN+LI GY  +GNATEA++LF+EM    V P  +TFI +LSAC + 
Sbjct: 447 AIFSQMHTQKDLVSWNALIGGYEHHGNATEALRLFQEMRSAKVMPTHITFISLLSACGNA 506

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629
           GLV  G  +F  M   Y + P VEHYA +++L+ R G+L++A E++K M I P+  +WG 
Sbjct: 507 GLVSEGQVVFHTMVHEYGLAPRVEHYAALVNLIGRHGQLEDALEVIKSMPIAPDRAVWGA 566

Query: 630 LLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689
            LGAC   +N  L  +A   LS+++P+ ++ Y L+ N+HA  GRW     VR  ME  G 
Sbjct: 567 FLGACTAKKNEVLAAVAANALSKIDPESSAPYVLMHNLHAHEGRWGSASVVREDMERLGI 626

Query: 690 QKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
            K PG SWI++ +++H F+SGD     T EI + L+      R+
Sbjct: 627 HKHPGYSWIDLHDKVHVFISGDTSHPLTQEIFSVLECFYRSCRD 670



 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 150/452 (33%), Positives = 245/452 (54%), Gaps = 51/452 (11%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V   N+ +  L + GR   A ++F  +  ++ VT+NS ++A ++   V  AR  F+ M
Sbjct: 34  SLVRQHNRSLMGLLRRGRFSAARRLFDALPARSVVTWNSFLAALSRRRDVRAARSFFDAM 93

Query: 73  PQRNLVSWNSMIAGY---LHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARE 129
           P R+++SWN+++A Y   L  D +  AR LFD+M + D  SW+ ++  YTR+G +E+A+ 
Sbjct: 94  PMRDIISWNTLLAAYARSLQPDHLAAARRLFDEMPQRDAVSWSTLLGAYTRRGLMEEAQR 153

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH- 188
           LFD +P++ + A WN MV G+  IG   +A  + +AMP K+  S ++M+SG+ +NG +H 
Sbjct: 154 LFDEMPHR-NPASWNTMVTGFFAIGQMRKALNVFEAMPVKDSASLSAMVSGFIRNGWLHE 212

Query: 189 ---LASKFFEAME-ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP--------------E 230
              L +K   AM+ ++ V ++N ++  Y +   +  A + F  IP              E
Sbjct: 213 ADELLTKRLRAMDMDKAVDAFNTLIAAYGQTGRVTDARRLFSMIPKTQSQHKGHKRRVFE 272

Query: 231 QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
           +NVVSW +M+  Y R G +  AR LFD+MP +++V WN MIA Y Q   +EEA +LF E+
Sbjct: 273 RNVVSWNSMMMCYIRTGDVCSARALFDEMPFKDLVTWNTMIAGYTQASDMEEAEKLFGEV 332

Query: 291 PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMD------- 343
           P  + V+W  MI G+ +   ++ AR   D+MP ++      MISGY QN+  D       
Sbjct: 333 PAPDAVTWNLMIRGFTQKGDVEHARGFFDRMPEQSTITWNTMISGYEQNEDYDCTIKLFQ 392

Query: 344 --------------------EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
                               + +Q+ +K    D    N ++  Y++CG +  A  +F QM
Sbjct: 393 RMLEVVLAACASLAMLRLGAQLHQLIEKSFLPDTATNNALMTMYSRCGELTSAKAIFSQM 452

Query: 384 -VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
              KD+V+WN +I GY       +A+++F+EM
Sbjct: 453 HTQKDLVSWNALIGGYEHHGNATEALRLFQEM 484



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 204/375 (54%), Gaps = 23/375 (6%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKV 93
           A ++F +M Q++ V++++++ AY + G + +A++LF++MP RN  SWN+M+ G+    ++
Sbjct: 120 ARRLFDEMPQRDAVSWSTLLGAYTRRGLMEEAQRLFDEMPHRNPASWNTMVTGFFAIGQM 179

Query: 94  KEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD--LLPNKEDTA--CWNAMVAG 149
           ++A  +F+ M   D  S + M++ + R G L +A EL    L     D A   +N ++A 
Sbjct: 180 RKALNVFEAMPVKDSASLSAMVSGFIRNGWLHEADELLTKRLRAMDMDKAVDAFNTLIAA 239

Query: 150 YAKIGNYNEAKKLLDAMP--------------SKNIVSWNSMLSGYTKNGEMHLASKFFE 195
           Y + G   +A++L   +P               +N+VSWNSM+  Y + G++  A   F+
Sbjct: 240 YGQTGRVTDARRLFSMIPKTQSQHKGHKRRVFERNVVSWNSMMMCYIRTGDVCSARALFD 299

Query: 196 AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRL 255
            M  +D+V+WN M+ GY +  D++ A K F ++P  + V+W  M+ G+ + G +  AR  
Sbjct: 300 EMPFKDLVTWNTMIAGYTQASDMEEAEKLFGEVPAPDAVTWNLMIRGFTQKGDVEHARGF 359

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR 315
           FD+MP ++ + WN MI+ Y Q    +   +LF  M E    +  ++    +R+    +  
Sbjct: 360 FDRMPEQSTITWNTMISGYEQNEDYDCTIKLFQRMLEVVLAACASL--AMLRLGA--QLH 415

Query: 316 RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH-DVVCWNVMIKGYAQCGRMD 374
           +L+++    + A   A+++ Y +   +  A  IF ++ T  D+V WN +I GY   G   
Sbjct: 416 QLIEKSFLPDTATNNALMTMYSRCGELTSAKAIFSQMHTQKDLVSWNALIGGYEHHGNAT 475

Query: 375 EAINLFRQMVNKDIV 389
           EA+ LF++M +  ++
Sbjct: 476 EALRLFQEMRSAKVM 490



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 163/324 (50%), Gaps = 52/324 (16%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMS--------------QKNTVTYNSMISAYAKNGRVND 64
           N  I   G++GRV +A ++FS +               ++N V++NSM+  Y + G V  
Sbjct: 234 NTLIAAYGQTGRVTDARRLFSMIPKTQSQHKGHKRRVFERNVVSWNSMMMCYIRTGDVCS 293

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGEL 124
           AR LF++MP ++LV+WN+MIAGY     ++EA +LF ++  PD  +W LMI  +T+KG++
Sbjct: 294 ARALFDEMPFKDLVTWNTMIAGYTQASDMEEAEKLFGEVPAPDAVTWNLMIRGFTQKGDV 353

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS---------------- 168
           E AR  FD +P ++ T  WN M++GY +  +Y+   KL   M                  
Sbjct: 354 EHARGFFDRMP-EQSTITWNTMISGYEQNEDYDCTIKLFQRMLEVVLAACASLAMLRLGA 412

Query: 169 -----------KNIVSWNSMLSGYTKNGEMHLASKFFEAME-ERDVVSWNLMLDGYVELD 216
                       +  + N++++ Y++ GE+  A   F  M  ++D+VSWN ++ GY    
Sbjct: 413 QLHQLIEKSFLPDTATNNALMTMYSRCGELTSAKAIFSQMHTQKDLVSWNALIGGYEHHG 472

Query: 217 DLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFDQMP-----IRNVVAW 267
           +   A + FQ++    V    ++++++LS     G + E + +F  M         V  +
Sbjct: 473 NATEALRLFQEMRSAKVMPTHITFISLLSACGNAGLVSEGQVVFHTMVHEYGLAPRVEHY 532

Query: 268 NAMIAAYVQRGQIEEAARLFIEMP 291
            A++    + GQ+E+A  +   MP
Sbjct: 533 AALVNLIGRHGQLEDALEVIKSMP 556



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 10/141 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQM-SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           N  +T   + G +  A  IFSQM +QK+ V++N++I  Y  +G   +A +LF++M    +
Sbjct: 430 NALMTMYSRCGELTSAKAIFSQMHTQKDLVSWNALIGGYEHHGNATEALRLFQEMRSAKV 489

Query: 78  ----VSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKAR 128
               +++ S+++   +   V E + +F  M       P +  +A ++    R G+LE A 
Sbjct: 490 MPTHITFISLLSACGNAGLVSEGQVVFHTMVHEYGLAPRVEHYAALVNLIGRHGQLEDAL 549

Query: 129 ELFDLLPNKEDTACWNAMVAG 149
           E+   +P   D A W A +  
Sbjct: 550 EVIKSMPIAPDRAVWGAFLGA 570


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  437 bits (1124), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 255/777 (32%), Positives = 415/777 (53%), Gaps = 72/777 (9%)

Query: 21  KITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSW 80
           K   LG   R+   IK      Q +    N++I+ YAK G    A+++F+ M ++++ SW
Sbjct: 122 KFKNLGDGERIYNHIK--KSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSW 179

Query: 81  NSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDLLPN 136
           N ++ GY+ +   +EA +L ++M     +PD  ++  M+        ++K REL++L+  
Sbjct: 180 NLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILK 239

Query: 137 ---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
                D     A++  + K G+  +A K+ D +P++++V+W SM++G  ++G    A   
Sbjct: 240 AGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNL 299

Query: 194 FEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT-------MLSG 242
           F+ MEE     D V++  +L      + L+   K   ++ E   V W T       +LS 
Sbjct: 300 FQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKE---VGWDTEIYVGTAILSM 356

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSW 298
           Y + G M +A  +FD +  RNVV+W AMIA + Q G+I+EA   F +M E     N V++
Sbjct: 357 YTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTF 416

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAA----QTAMISGYVQNKRMDEANQIFDKIGT 354
            +++      + L   +++ D +      +    +TA++S Y +   + +A+++F+KI  
Sbjct: 417 MSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISK 476

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK---------------------------- 386
            +VV WN MI  Y Q  + D A+  F+ ++ +                            
Sbjct: 477 QNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWV 536

Query: 387 -----------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEF 435
                      D+   N +++ +     +  A  +F +M KR + VSWN +I+GF+Q+  
Sbjct: 537 HFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKR-DLVSWNTIIAGFVQHGK 595

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS 495
           +  A   F +M + G K D  T    L+ACA   AL  GR++H L  ++ +  D+ VG  
Sbjct: 596 NQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTG 655

Query: 496 LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555
           LI+MY KCG I++A  +F      +V SW S+IAGYA +G   EA++LF +M  EGV PD
Sbjct: 656 LISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPD 715

Query: 556 PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV 615
            +TF+G LSAC+H GL++ GL  F+ M E + IEP +EHY CM+DL  RAG L+EA E +
Sbjct: 716 WITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPRMEHYGCMVDLFGRAGLLNEAVEFI 774

Query: 616 KGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWD 675
             M+++P++ +WG LLGAC++H N++L   A +K  EL+P     + +LSN++A AG W 
Sbjct: 775 IKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWK 834

Query: 676 EVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           EV K+R  M   G  K+PG SWIEV  ++HTF S D    +T EI   L+ L  ++R
Sbjct: 835 EVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMR 891



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 164/644 (25%), Positives = 300/644 (46%), Gaps = 131/644 (20%)

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV----SWNSMLSGYTKNGEMHLASKF 193
           +DT   NA++   +K G +NEA ++L+ + S +I     +++++L    K   +    + 
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 194 FEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRM 249
           +  ++    + D+   N +++ Y +  +  SA + F  + E++V SW  +L GY ++G  
Sbjct: 133 YNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192

Query: 250 LEARRLFDQM--------------------PIRNV------------VAWN-------AM 270
            EA +L +QM                      RNV              W+       A+
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTAL 252

Query: 271 IAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM------PYK 324
           I  +++ G I +A ++F  +P R+ V+WT+MI G  R  +  +A  L  +M      P K
Sbjct: 253 INMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDK 312

Query: 325 ---------------------------------NIAAQTAMISGYVQNKRMDEANQIFDK 351
                                             I   TA++S Y +   M++A ++FD 
Sbjct: 313 VAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDL 372

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI----VTWNTMIAG---------- 397
           +   +VV W  MI G+AQ GR+DEA   F +M+   I    VT+ +++            
Sbjct: 373 VKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRG 432

Query: 398 -------------------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
                                    YA+   + DA ++FE++ K +N V+WNA+I+ ++Q
Sbjct: 433 QQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISK-QNVVAWNAMITAYVQ 491

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
           +E + +AL  F  + +EG K + ST    L+ C    +L+LG+ +H L +K+G  +DL V
Sbjct: 492 HEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHV 551

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
            N+L++M+  CG + +A+ LF D    D++SWN++IAG+  +G    A   F+ M   G+
Sbjct: 552 SNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGI 611

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
            PD +TF G+L+AC+    +  G +L   +TE  A +  V     +I + ++ G +++A 
Sbjct: 612 KPDKITFTGLLNACASPEALTEGRRLHALITEA-AFDCDVLVGTGLISMYTKCGSIEDAH 670

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQ 656
           ++   +  K N   W +++     H     G+ A+E   +++ +
Sbjct: 671 QVFHKLP-KKNVYSWTSMIAGYAQHGR---GKEALELFYQMQQE 710



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/469 (23%), Positives = 217/469 (46%), Gaps = 60/469 (12%)

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-----SWTTMIDGYVRIAKLDEAR 315
           I++    NA++    + GQ  EA ++ +E  + + +     +++ ++   ++   L +  
Sbjct: 72  IKDTQKANAVLNRLSKAGQFNEAMQV-LERVDSSHIQIYRQTYSALLQLCIKFKNLGDGE 130

Query: 316 RLLDQMPYK----NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
           R+ + +       +I  +  +I+ Y +      A QIFD +   DV  WN+++ GY Q G
Sbjct: 131 RIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHG 190

Query: 372 RMDEAINLFRQMVN----KDIVTWNTMIAGYAQIRQMD---------------------- 405
             +EA  L  QMV      D  T+ +M+   A  R +D                      
Sbjct: 191 LYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGT 250

Query: 406 -------------DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
                        DA K+F+ +   R+ V+W ++I+G  ++     A  +F  M +EG +
Sbjct: 251 ALINMHIKCGDIGDATKVFDNL-PTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQ 309

Query: 453 ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512
            D       L AC H  AL+ G+++H    + G+  +++VG ++++MY KCG +++A  +
Sbjct: 310 PDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEV 369

Query: 513 FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
           F      +V+SW ++IAG+A +G   EA   F +M+  G+ P+ VTF+ +L ACS    +
Sbjct: 370 FDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSAL 429

Query: 573 DGGLKLFECMTEV-YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
             G ++ + + E  Y  +  V     ++ + ++ G L +A  + + +  K N   W  ++
Sbjct: 430 KRGQQIQDHIIEAGYGSDDRVR--TALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMI 486

Query: 632 GACRMHQNIKLGRIAVEKLSE--LEPQKTSCYALL----SNMHAEAGRW 674
            A   H+         + L +  ++P  ++  ++L    S+   E G+W
Sbjct: 487 TAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKW 535



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 165/347 (47%), Gaps = 55/347 (15%)

Query: 11  KGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQK----NTVTYNSMISA----------- 55
           KG  V +    I    + GR++EA   F++M +     N VT+ S++ A           
Sbjct: 374 KGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQ 433

Query: 56  ------------------------YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHND 91
                                   YAK G + DA ++FE++ ++N+V+WN+MI  Y+ ++
Sbjct: 434 QIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHE 493

Query: 92  KVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWN 144
           +   A   F  +     +P+  ++  ++        LE  + +  L+     + D    N
Sbjct: 494 QYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSN 553

Query: 145 AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER---- 200
           A+V+ +   G+   AK L + MP +++VSWN++++G+ ++G+  +A  +F+ M+E     
Sbjct: 554 ALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKP 613

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARNGRMLEARRLF 256
           D +++  +L+     + L    +    I E     +V+    ++S Y + G + +A ++F
Sbjct: 614 DKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVF 673

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN-PVSWTTMI 302
            ++P +NV +W +MIA Y Q G+ +EA  LF +M +      W T +
Sbjct: 674 HKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFV 720


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 254/777 (32%), Positives = 415/777 (53%), Gaps = 72/777 (9%)

Query: 21  KITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSW 80
           K   LG   R+   IK      Q +   +N++I+ YAK G    A+++F+ M ++++ SW
Sbjct: 122 KFKNLGDGERIYNHIK--KSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSW 179

Query: 81  NSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDLLPN 136
           N ++ GY+ +   +EA +L ++M     +PD  ++  M+        ++K REL++L+  
Sbjct: 180 NLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILK 239

Query: 137 ---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
                D     A++  + K G+  +A K+ D +P++++V+W SM++G  ++G    A   
Sbjct: 240 AGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNL 299

Query: 194 FEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT-------MLSG 242
           F+ MEE     D V++  +L      + L+   K   ++ E   V W T       +LS 
Sbjct: 300 FQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKE---VGWDTEIYVGTAILSM 356

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSW 298
           Y + G M +A  +FD +  RNVV+W AMIA + Q G+I+EA   F +M E     N V++
Sbjct: 357 YTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTF 416

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAA----QTAMISGYVQNKRMDEANQIFDKIGT 354
            +++      + L   +++ D +      +    +TA++S Y +   + +A+++F+KI  
Sbjct: 417 MSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISK 476

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK---------------------------- 386
            +VV WN MI  Y Q  + D A+  F+ ++ +                            
Sbjct: 477 QNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWV 536

Query: 387 -----------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEF 435
                      D+   N +++ +     +  A  +F +M KR + VSWN +I+GF+Q+  
Sbjct: 537 HFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKR-DLVSWNTIIAGFVQHGK 595

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS 495
           +  A   F +M + G K D  T    L+ACA   AL  GR++H L  ++ +  D+ VG  
Sbjct: 596 NQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTG 655

Query: 496 LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555
           LI+MY KCG I++A  +F      +V SW S+I GYA +G   EA++LF +M  EGV PD
Sbjct: 656 LISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPD 715

Query: 556 PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV 615
            +TF+G LSAC+H GL++ GL  F+ M E + IEP +EHY CM+DL  RAG L+EA E +
Sbjct: 716 WITFVGALSACAHAGLIEEGLHHFQSMKE-FNIEPRMEHYGCMVDLFGRAGLLNEAVEFI 774

Query: 616 KGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWD 675
             M+++P++ +WG LLGAC++H N++L   A +K  EL+P     + +LSN++A AG W 
Sbjct: 775 IKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWK 834

Query: 676 EVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           EV K+R  M   G  K+PG SWIEV  ++HTF S D    +T EI   L+ L  ++R
Sbjct: 835 EVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMR 891



 Score =  235 bits (600), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 168/644 (26%), Positives = 306/644 (47%), Gaps = 131/644 (20%)

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK---------------------------- 169
           +DT   NA++   +K G +NEA ++L+ + S                             
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 170 -----------NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDL 218
                      +I  WN++++ Y K G    A + F+ M E+DV SWNL+L GYV+    
Sbjct: 133 YNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192

Query: 219 DSAWKFFQKIPEQNVV----SWVTMLSGY--ARN---GRML------------------- 250
           + A+K  +++ + +V     ++V+ML+    ARN   GR L                   
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTAL 252

Query: 251 -----------EARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NP 295
                      +A ++FD +P R++V W +MI    + G+ ++A  LF  M E     + 
Sbjct: 253 INMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDK 312

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQMPY----KNIAAQTAMISGYVQNKRMDEANQIFDK 351
           V++ +++        L++ +++  +M        I   TA++S Y +   M++A ++FD 
Sbjct: 313 VAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDL 372

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI----VTWNTMIAG---------- 397
           +   +VV W  MI G+AQ GR+DEA   F +M+   I    VT+ +++            
Sbjct: 373 VKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRG 432

Query: 398 -------------------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
                                    YA+   + DA ++FE++ K +N V+WNA+I+ ++Q
Sbjct: 433 QQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISK-QNVVAWNAMITAYVQ 491

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
           +E + +AL  F  + +EG K + ST    L+ C    +L+LG+ +H L +K+G  +DL V
Sbjct: 492 HEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHV 551

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
            N+L++M+  CG + +A+ LF D    D++SWN++IAG+  +G    A   F+ M   G+
Sbjct: 552 SNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGI 611

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
            PD +TF G+L+AC+    +  G +L   +TE  A +  V     +I + ++ G +++A 
Sbjct: 612 KPDKITFTGLLNACASPEALTEGRRLHALITEA-AFDCDVLVGTGLISMYTKCGSIEDAH 670

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQ 656
           ++   +  K N   W +++     H     G+ A+E   +++ +
Sbjct: 671 QVFHKLP-KKNVYSWTSMITGYAQHGR---GKEALELFYQMQQE 710



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/404 (24%), Positives = 177/404 (43%), Gaps = 93/404 (23%)

Query: 11  KGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQK----NTVTYNSMISA----------- 55
           KG  V +    I    + GR++EA   F++M +     N VT+ S++ A           
Sbjct: 374 KGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQ 433

Query: 56  ------------------------YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHND 91
                                   YAK G + DA ++FE++ ++N+V+WN+MI  Y+ ++
Sbjct: 434 QIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHE 493

Query: 92  KVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWN 144
           +   A   F  +     +P+  ++  ++        LE  + +  L+     + D    N
Sbjct: 494 QYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSN 553

Query: 145 AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER---- 200
           A+V+ +   G+   AK L + MP +++VSWN++++G+ ++G+  +A  +F+ M+E     
Sbjct: 554 ALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKP 613

Query: 201 -----------------------------------DVVSWNLMLDGYVELDDLDSAWKFF 225
                                              DV+    ++  Y +   ++ A + F
Sbjct: 614 DKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVF 673

Query: 226 QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIE 281
            K+P++NV SW +M++GYA++GR  EA  LF QM    V    + +   ++A    G IE
Sbjct: 674 HKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIE 733

Query: 282 EAARLFIEMPERN--PV--SWTTMIDGYVRIAKLDEARRLLDQM 321
           E    F  M E N  P    +  M+D + R   L+EA   + +M
Sbjct: 734 EGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKM 777


>gi|449467189|ref|XP_004151307.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Cucumis sativus]
          Length = 711

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 246/731 (33%), Positives = 398/731 (54%), Gaps = 50/731 (6%)

Query: 10  NKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLF 69
           N   + FN + +I  L K G  + A +   Q S K  V  NS I+   +NG + +A  +F
Sbjct: 16  NFKPFFFNFSTQI--LSKRGNFDSATR---QKSSKFLVYCNSQITKLGRNGCIKEAESIF 70

Query: 70  EQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARE 129
            +MP +N VSW +++  Y  N ++ +ARE+F+K+  P++ S+  MIT Y R+  +++A E
Sbjct: 71  NRMPNKNTVSWTALLTAYAENSEINKAREVFNKIPDPNVASYNAMITAYHRRNMVDEAFE 130

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           LF  +P + ++  +  M+ G+   G ++ A+KL    P   IVS N +++GY+K G +  
Sbjct: 131 LFSSMPQR-NSVSYATMITGFVHAGMFDMAEKLHREKPV--IVSSNVLINGYSKVGRVED 187

Query: 190 ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRM 249
           A + F+ M E+DVVSW+ M+ G   +  +  A K F K+P++NVV+W  M+ GY +   +
Sbjct: 188 AVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKLFDKMPDRNVVTWTLMIDGYMKMNFL 247

Query: 250 LEARRLFDQMPIRNVVAWNAMI--------AAYVQRGQIEEAARLFIEMP-ERNPVSWTT 300
            +   LF  M  R  V  NA           ++ + G+  +   L + +  + +     +
Sbjct: 248 KDGFILFLNMR-REGVEVNATTLTVLLEACGSFDRYGEGIQIHGLVLSLGFDVDAYLANS 306

Query: 301 MIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW 360
           +I  Y R   +D A +  D M  K+I    ++I+GYVQ+  +++A  +F+ +   DVV W
Sbjct: 307 IITMYSRCYSIDAAAKQFDLMVKKDIVTWNSLITGYVQSGNLEKAVFLFENMPQKDVVSW 366

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
             +I G+A  GR+DE I LF+ M  KD + W  +I+G   I + + A             
Sbjct: 367 TTLICGFASEGRIDEFIGLFQMMPEKDAIAWTAVISGLVSIEEYEIA------------- 413

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
                         FH      F+ M Q   K +  TL+C LSA A +A L  G QIH +
Sbjct: 414 --------------FHW-----FIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHAI 454

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEA 540
             K    NDL + NSL++MY+KCG + +A  +F      +V+++N++I G A NG   EA
Sbjct: 455 VTKMSMENDLSIQNSLVSMYSKCGNVDDALKMFYYIKVPNVVAYNTIITGLAQNGLGKEA 514

Query: 541 IKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMID 600
           +++F +M  + + P+ +TF+GVLSAC HVGLV+ G + F+ M  +Y I+P  +HYACM+D
Sbjct: 515 LEIFTKMQDDYLVPNHITFLGVLSACVHVGLVEEGRRYFDLMRSLYDIQPEPDHYACMVD 574

Query: 601 LLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSC 660
           LL RAG  DEA  +V  M   P+ G+WG +LGA   H  + +  +A + L ELEP   + 
Sbjct: 575 LLCRAGMFDEAVSLVSSMPFDPHQGVWGAVLGASWTHLRLDVAELAAQNLFELEPNSATP 634

Query: 661 YALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           Y +LSN+H+ +G   + E +R+  +  G +K PGCSWI +K+++H F +G        E+
Sbjct: 635 YVILSNLHSISGDERKHELIRLMKKSRGLKKSPGCSWIILKDEVHLFHAGHQSIKNIKEM 694

Query: 721 CNTLKTLAAQI 731
              +  LA ++
Sbjct: 695 TEIIYALAEEV 705


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 250/774 (32%), Positives = 412/774 (53%), Gaps = 66/774 (8%)

Query: 21  KITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSW 80
           K   LG   R+   IK FS++ Q +   +N +IS YAK G  N A+++F++MP +++ SW
Sbjct: 116 KHKNLGDGERIHNHIK-FSKI-QPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSW 173

Query: 81  NSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDLLPN 136
           N ++ GY+ + + +EA  L ++M     +PD +++  M+        ++K  ELF L+ N
Sbjct: 174 NLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILN 233

Query: 137 ---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
                D     A++  + K G  ++A K+ + +P +++++W SM++G  ++ +   A   
Sbjct: 234 AGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNL 293

Query: 194 FEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPE----QNVVSWVTMLSGYAR 245
           F+ MEE     D V++  +L      + L+   +   ++ E      +     +LS Y +
Sbjct: 294 FQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTK 353

Query: 246 NGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTM 301
            G M +A  +F+ +  RNVV+W AMIA + Q G++EEA   F +M E     N V++ ++
Sbjct: 354 CGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSI 413

Query: 302 IDGYVRIAKLDEARRLLDQMP----YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV 357
           +    R + L + R++ D++       +   +TA++S Y +   + +A  +F++I   +V
Sbjct: 414 LGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNV 473

Query: 358 VCWNVMIKGYAQCGRMDEAINLFRQMVNK------------------------------- 386
           V WN MI  Y Q  + D A+  F+ ++ +                               
Sbjct: 474 VAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSL 533

Query: 387 --------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
                   D+   N +++ +     +  A+ +F +M   R+ VSWN +I+GF+Q+  +  
Sbjct: 534 IIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDM-PERDLVSWNTIIAGFVQHGENQF 592

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
           A   F +M + G K D  T    L+ACA   AL  GR++H L  ++    D+ VG  LI+
Sbjct: 593 AFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLIS 652

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           MY KCG I +A L+F +    +V SW S+I GYA +G   EA++LF +M  EGV PD +T
Sbjct: 653 MYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWIT 712

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
           F+G LSAC+H GL+  GL  FE M + + IEP +EHY CM+DL  RAG L EA E +  M
Sbjct: 713 FVGALSACAHAGLIKEGLHHFESMKD-FNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKM 771

Query: 619 KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVE 678
           ++KP++ +WG LLGAC++H +++L     +K  EL+P     Y +LSN++A AG W EV 
Sbjct: 772 QVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVT 831

Query: 679 KVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           K+R  M   G  K+PG SWIEV  ++H F S D    +  EI   L  L  +++
Sbjct: 832 KMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDDKTHPQIEEIHAELGRLHMEMK 885



 Score =  244 bits (624), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 160/602 (26%), Positives = 298/602 (49%), Gaps = 63/602 (10%)

Query: 112 ALMITCYTRK--GELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK 169
           +L+  C   K  G+ E+          + D   WN +++ YAK GN N AK++ D MP K
Sbjct: 109 SLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDK 168

Query: 170 NIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFF 225
           ++ SWN +L GY ++     A +  E M +     D  ++  ML+   +  ++D   + F
Sbjct: 169 DVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELF 228

Query: 226 QKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIE 281
             I     + ++     +++ + + G + +A ++F+ +P R+++ W +MI    +  Q +
Sbjct: 229 SLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFK 288

Query: 282 EAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPY----KNIAAQTAMI 333
           +A  LF  M E     + V++ +++        L++ +R+  +M        I   TA++
Sbjct: 289 QACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALL 348

Query: 334 SGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI----V 389
           S Y +   M++A ++F+ +   +VV W  MI G+AQ GRM+EA   F +M+   I    V
Sbjct: 349 SMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRV 408

Query: 390 TWNTMIAG-----------------------------------YAQIRQMDDAVKIFEEM 414
           T+ +++                                     YA+   + DA  +FE +
Sbjct: 409 TFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERI 468

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
            K +N V+WNA+I+ ++Q+E + +A+  F  + +EG K D ST    L+ C    AL+LG
Sbjct: 469 SK-QNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELG 527

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
           + +  L I++G+ +DL + N+L++M+  CG + +A  LF D    D++SWN++IAG+  +
Sbjct: 528 KWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQH 587

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEH 594
           G    A   F+ M   GV PD +TF G+L+AC+    +  G +L   +TE  A++  V  
Sbjct: 588 GENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEA-ALDCDVVV 646

Query: 595 YACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE 654
              +I + ++ G +D+A  +   +  K N   W +++     H     G+ A+E   +++
Sbjct: 647 GTGLISMYTKCGSIDDAHLVFHNLP-KKNVYSWTSMITGYAQHGR---GKEALELFCQMQ 702

Query: 655 PQ 656
            +
Sbjct: 703 QE 704



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/363 (28%), Positives = 169/363 (46%), Gaps = 73/363 (20%)

Query: 322 PYKNIAAQT--AMISGYVQNKRMDEANQI-----FDKIGTHDVVCWNVMIKGYAQCGRMD 374
           P+  I  QT  +++   +++K + +  +I     F KI   D+  WN++I  YA+CG  +
Sbjct: 98  PHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQP-DIFMWNMLISMYAKCGNTN 156

Query: 375 EAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
            A  +F +M +KD+ +WN ++ GY Q R+ ++A ++ E+                     
Sbjct: 157 SAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQ--------------------- 195

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN 494
                      M Q+G K D  T    L+ACA    +  G ++  L + +G+  DLFVG 
Sbjct: 196 -----------MVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGT 244

Query: 495 SLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP 554
           +LI M+ KCG + +A  +F +    D+I+W S+I G A +    +A  LF+ M  EGV P
Sbjct: 245 ALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQP 304

Query: 555 DPVTFIGVLSACSHVGLVDGGLKLFECM------TEVYAIEPLVEHY------------- 595
           D V F+ +L AC+H   ++ G ++   M      TE+Y    L+  Y             
Sbjct: 305 DKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVF 364

Query: 596 -----------ACMIDLLSRAGRLDEAFEMVKGM---KIKPNAGIWGTLLGACRMHQNIK 641
                        MI   ++ GR++EAF     M    I+PN   + ++LGAC     +K
Sbjct: 365 NLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALK 424

Query: 642 LGR 644
            GR
Sbjct: 425 QGR 427



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 112/476 (23%), Positives = 203/476 (42%), Gaps = 97/476 (20%)

Query: 11  KGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQK----NTVTYNSMISA----------- 55
           KG  V +    I    + GR+EEA   F++M +     N VT+ S++ A           
Sbjct: 368 KGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGR 427

Query: 56  ------------------------YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHND 91
                                   YAK G + DAR +FE++ ++N+V+WN+MI  Y+ ++
Sbjct: 428 QIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHE 487

Query: 92  KVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWN 144
           K   A   F  +     +PD  ++  ++        LE  + +  L+     + D    N
Sbjct: 488 KYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRN 547

Query: 145 AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER---- 200
           A+V+ +   G+   A  L + MP +++VSWN++++G+ ++GE   A  +F+ M+E     
Sbjct: 548 ALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKP 607

Query: 201 -----------------------------------DVVSWNLMLDGYVELDDLDSAWKFF 225
                                              DVV    ++  Y +   +D A   F
Sbjct: 608 DQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVF 667

Query: 226 QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIE 281
             +P++NV SW +M++GYA++GR  EA  LF QM    V    + +   ++A    G I+
Sbjct: 668 HNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIK 727

Query: 282 EAARLFIEMPERN--PV--SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYV 337
           E    F  M + N  P    +  M+D + R   L EA   +++M  K  +     + G  
Sbjct: 728 EGLHHFESMKDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGAC 787

Query: 338 Q-NKRMDEANQIFDK---IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIV 389
           Q +  ++ A ++  K   +  +D   + ++   YA  G   E   + + M+++ +V
Sbjct: 788 QVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVV 843



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 123/257 (47%), Gaps = 5/257 (1%)

Query: 418 RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI 477
           +NT   NA ++   +     +A+ + + +     +    T +  L  C     L  G +I
Sbjct: 67  KNTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERI 126

Query: 478 HHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNA 537
           H+    S    D+F+ N LI+MYAKCG   +A+ +F +    DV SWN L+ GY  +   
Sbjct: 127 HNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRY 186

Query: 538 TEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYAC 597
            EA +L E+MV +GV PD  TF+ +L+AC+    VD G +LF  +        L    A 
Sbjct: 187 EEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTA- 245

Query: 598 MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSE--LEP 655
           +I++  + G +D+A ++   +  + +   W +++     H+  K      + + E  ++P
Sbjct: 246 LINMHIKCGGVDDALKVFNNLP-RRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQP 304

Query: 656 QKTSCYALLSNM-HAEA 671
            K +  +LL    H EA
Sbjct: 305 DKVAFVSLLKACNHPEA 321


>gi|357438957|ref|XP_003589755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478803|gb|AES60006.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 891

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 213/544 (39%), Positives = 334/544 (61%), Gaps = 5/544 (0%)

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ-NV 233
           N  +S   + G+++ A K F+ M +RD   W  M+ GY++   ++ A K F +   Q +V
Sbjct: 49  NYFISKLCREGKVNEARKVFDEMSKRDSCLWTTMISGYIKCGLINEARKLFDRPDAQKSV 108

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           + W  M+SGY +  R+ EA RLF++MP+RNVV+WN MI  Y + G+ +EA  LF  MPER
Sbjct: 109 IVWTAMVSGYIKMNRIEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQEALDLFGRMPER 168

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
           N VSW T++       ++D+A RL ++M  +++ + T M++G  +N R+D A ++FDK+ 
Sbjct: 169 NVVSWNTVMTALAHCGRIDDAERLFNEMRERDVVSWTTMVAGLSKNGRVDAAREVFDKMP 228

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEE 413
             +VV WN MI GYAQ GR DEA+ LF +M  +D+ +WNTM+ G+ Q   ++ A ++F  
Sbjct: 229 IRNVVSWNAMIAGYAQNGRFDEALKLFERMPERDMPSWNTMVTGFIQNGDLNRAEQLFHA 288

Query: 414 MGKRRNTVSWNALISGFLQNEFHLDALKIFVLM-TQEGKKADHSTLACALSACAHLAALQ 472
           M  ++N ++W A+++G++Q+    +ALK+F  M   +G K    T    L AC+ LA L 
Sbjct: 289 M-PQKNVITWTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTFVTVLGACSDLAGLP 347

Query: 473 LGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD--ADPVDVISWNSLIAG 530
            G+QIH +  K+ +    +V ++LI MY+KCG    A+ +F D  +  +D+I+WN +IA 
Sbjct: 348 EGQQIHQMISKTVFQESTYVVSALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNGMIAA 407

Query: 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP 590
           YA +G   EAI LF +M   G   + VT++G+L+ACSH GL D G K F+ + +   I+ 
Sbjct: 408 YAHHGYGNEAINLFNKMQELGFQANDVTYVGLLTACSHAGLFDEGFKYFDELLKNRYIQV 467

Query: 591 LVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL 650
             +HY C+IDL  RAGRLDEA  +++G+  + +  +WG LL  C +H N  +G++  +K+
Sbjct: 468 REDHYTCLIDLCGRAGRLDEALNIIEGLGKEVSLSLWGALLAGCSVHGNADIGKLVADKV 527

Query: 651 SELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSG 710
            ++EP+    Y L SNM+A  G  +E   VR+ M+  G +KQPGCSWI+V N +  F+  
Sbjct: 528 LKMEPENADTYLLASNMYASVGMREEAANVRMKMKKKGLKKQPGCSWIDVGNTVQVFVVN 587

Query: 711 DPKQ 714
           D   
Sbjct: 588 DKSH 591



 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 165/506 (32%), Positives = 284/506 (56%), Gaps = 19/506 (3%)

Query: 81  NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
           N  I+      KV EAR++FD+M + D   W  MI+ Y + G + +AR+LFD    ++  
Sbjct: 49  NYFISKLCREGKVNEARKVFDEMSKRDSCLWTTMISGYIKCGLINEARKLFDRPDAQKSV 108

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER 200
             W AMV+GY K+    EA++L + MP +N+VSWN+M+ GY +NG    A   F  M ER
Sbjct: 109 IVWTAMVSGYIKMNRIEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQEALDLFGRMPER 168

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
           +VVSWN ++        +D A + F ++ E++VVSW TM++G ++NGR+  AR +FD+MP
Sbjct: 169 NVVSWNTVMTALAHCGRIDDAERLFNEMRERDVVSWTTMVAGLSKNGRVDAAREVFDKMP 228

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
           IRNVV+WNAMIA Y Q G+ +EA +LF  MPER+  SW TM+ G+++   L+ A +L   
Sbjct: 229 IRNVVSWNAMIAGYAQNGRFDEALKLFERMPERDMPSWNTMVTGFIQNGDLNRAEQLFHA 288

Query: 321 MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV-----CWNVMIKGYAQCGRMDE 375
           MP KN+   TAM++GYVQ+   +EA ++F+K+  +D +      +  ++   +    + E
Sbjct: 289 MPQKNVITWTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTFVTVLGACSDLAGLPE 348

Query: 376 AINLFRQMVNKDIVTWNT-----MIAGYAQIRQMDDAVKIFEE-MGKRRNTVSWNALISG 429
              +  QM++K +   +T     +I  Y++      A K+F++ +    + ++WN +I+ 
Sbjct: 349 GQQI-HQMISKTVFQESTYVVSALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNGMIAA 407

Query: 430 FLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN- 488
           +  + +  +A+ +F  M + G +A+  T    L+AC+H      G +     +K+ Y+  
Sbjct: 408 YAHHGYGNEAINLFNKMQELGFQANDVTYVGLLTACSHAGLFDEGFKYFDELLKNRYIQV 467

Query: 489 --DLFVGNSLITMYAKCGRIQNAELLFKD-ADPVDVISWNSLIAGYAINGNATEAIKLFE 545
             D +    LI +  + GR+  A  + +     V +  W +L+AG +++GNA +  KL  
Sbjct: 468 REDHYT--CLIDLCGRAGRLDEALNIIEGLGKEVSLSLWGALLAGCSVHGNA-DIGKLVA 524

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGL 571
           + V++    +  T++   +  + VG+
Sbjct: 525 DKVLKMEPENADTYLLASNMYASVGM 550



 Score =  261 bits (667), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 141/417 (33%), Positives = 246/417 (58%), Gaps = 19/417 (4%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM-PQRNL 77
           N  I++L + G+V EA K+F +MS++++  + +MIS Y K G +N+ARKLF++   Q+++
Sbjct: 49  NYFISKLCREGKVNEARKVFDEMSKRDSCLWTTMISGYIKCGLINEARKLFDRPDAQKSV 108

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
           + W +M++GY+  ++++EA  LF++M   ++ SW  MI  Y R G  ++A +LF  +P +
Sbjct: 109 IVWTAMVSGYIKMNRIEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQEALDLFGRMPER 168

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            +   WN ++   A  G  ++A++L + M  +++VSW +M++G +KNG +  A + F+ M
Sbjct: 169 -NVVSWNTVMTALAHCGRIDDAERLFNEMRERDVVSWTTMVAGLSKNGRVDAAREVFDKM 227

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFD 257
             R+VVSWN M+ GY +    D A K F+++PE+++ SW TM++G+ +NG +  A +LF 
Sbjct: 228 PIRNVVSWNAMIAGYAQNGRFDEALKLFERMPERDMPSWNTMVTGFIQNGDLNRAEQLFH 287

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-----SWTTMIDGYVRIAKLD 312
            MP +NV+ W AM+  YVQ G  EEA +LF +M   + +     ++ T++     +A L 
Sbjct: 288 AMPQKNVITWTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTFVTVLGACSDLAGLP 347

Query: 313 EARRLLDQMPYKNIAAQ-----TAMISGYVQNKRMDEANQIFDK--IGTHDVVCWNVMIK 365
           E ++ + QM  K +  +     +A+I+ Y +      A ++FD    G  D++ WN MI 
Sbjct: 348 EGQQ-IHQMISKTVFQESTYVVSALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNGMIA 406

Query: 366 GYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRR 418
            YA  G  +EAINLF +M       + VT+  ++   +     D+  K F+E+ K R
Sbjct: 407 AYAHHGYGNEAINLFNKMQELGFQANDVTYVGLLTACSHAGLFDEGFKYFDELLKNR 463



 Score =  211 bits (538), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 123/401 (30%), Positives = 211/401 (52%), Gaps = 55/401 (13%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K  R+EEA ++F++M  +N V++N+MI  YA+NGR  +A  LF +MP+RN+VSWN+++  
Sbjct: 120 KMNRIEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQEALDLFGRMPERNVVSWNTVMTA 179

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
             H  ++ +A  LF++M   D+ SW  M+   ++ G ++ ARE+FD +P + +   WNAM
Sbjct: 180 LAHCGRIDDAERLFNEMRERDVVSWTTMVAGLSKNGRVDAAREVFDKMPIR-NVVSWNAM 238

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN 206
           +AGYA+ G ++EA KL + MP +++ SWN+M++G+ +NG+++ A + F AM +++V++W 
Sbjct: 239 IAGYAQNGRFDEALKLFERMPERDMPSWNTMVTGFIQNGDLNRAEQLFHAMPQKNVITWT 298

Query: 207 LMLDGYVELDDLDSAWKFFQKIPEQNVV-----SWVTMLSG------------------- 242
            M+ GYV+    + A K F K+   + +     ++VT+L                     
Sbjct: 299 AMMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTFVTVLGACSDLAGLPEGQQIHQMISK 358

Query: 243 ----------------YARNGRMLEARRLFDQ--MPIRNVVAWNAMIAAYVQRGQIEEAA 284
                           Y++ G    A+++FD       +++AWN MIAAY   G   EA 
Sbjct: 359 TVFQESTYVVSALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNGMIAAYAHHGYGNEAI 418

Query: 285 RLFIEMPE----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ------TAMIS 334
            LF +M E     N V++  ++         DE  +  D++  KN   Q      T +I 
Sbjct: 419 NLFNKMQELGFQANDVTYVGLLTACSHAGLFDEGFKYFDEL-LKNRYIQVREDHYTCLID 477

Query: 335 GYVQNKRMDEANQIFDKIGTH-DVVCWNVMIKGYAQCGRMD 374
              +  R+DEA  I + +G    +  W  ++ G +  G  D
Sbjct: 478 LCGRAGRLDEALNIIEGLGKEVSLSLWGALLAGCSVHGNAD 518



 Score =  159 bits (402), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 111/393 (28%), Positives = 206/393 (52%), Gaps = 33/393 (8%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  +T L   GR+++A ++F++M +++ V++ +M++  +KNGRV+ AR++F++MP 
Sbjct: 170 VVSWNTVMTALAHCGRIDDAERLFNEMRERDVVSWTTMVAGLSKNGRVDAAREVFDKMPI 229

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN+VSWN+MIAGY  N +  EA +LF++M   D+ SW  M+T + + G+L +A +LF  +
Sbjct: 230 RNVVSWNAMIAGYAQNGRFDEALKLFERMPERDMPSWNTMVTGFIQNGDLNRAEQLFHAM 289

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN-----------IVSWNSMLSGYTK 183
           P K +   W AM+ GY + G   EA KL + M + +           ++   S L+G  +
Sbjct: 290 PQK-NVITWTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTFVTVLGACSDLAGLPE 348

Query: 184 NGEMH--LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK--IPEQNVVSWVTM 239
             ++H  ++   F+  E   VVS   +++ Y +  D   A K F        ++++W  M
Sbjct: 349 GQQIHQMISKTVFQ--ESTYVVS--ALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNGM 404

Query: 240 LSGYARNGRMLEARRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
           ++ YA +G   EA  LF++M       N V +  ++ A    G  +E  + F E+ +   
Sbjct: 405 IAAYAHHGYGNEAINLFNKMQELGFQANDVTYVGLLTACSHAGLFDEGFKYFDELLKNRY 464

Query: 296 VS-----WTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIF 349
           +      +T +ID   R  +LDEA  +++ +  + +++   A+++G   +   D    + 
Sbjct: 465 IQVREDHYTCLIDLCGRAGRLDEALNIIEGLGKEVSLSLWGALLAGCSVHGNADIGKLVA 524

Query: 350 DKI---GTHDVVCWNVMIKGYAQCGRMDEAINL 379
           DK+      +   + +    YA  G  +EA N+
Sbjct: 525 DKVLKMEPENADTYLLASNMYASVGMREEAANV 557



 Score = 42.0 bits (97), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 79/175 (45%), Gaps = 28/175 (16%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKN----TVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           I    + GRV+EAI + ++M  K       TY  +I   A +GR+N+   +FE+M     
Sbjct: 711 IRAFCEKGRVDEAIGLMTEMEGKGLRAYDETYECVIVGCADSGRLNECWSVFEEMLSVGF 770

Query: 78  VSWNSM---IAGYLHNDKVKEARE----LFDKMFRP-DLFS-------------WALMIT 116
           V    +   +A  L + +V++  +    L DK F P D++              ++ MI 
Sbjct: 771 VPSGLLFDKVAEKLCDGEVEKVNDMLTVLLDKGFLPSDIYYEMEYKSMCPGFSVYSSMIQ 830

Query: 117 CYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPS 168
           C+    +++ A +   ++  +    + + +  ++A + + GN   A +L + M S
Sbjct: 831 CFCHLDKVDDAEKYLRIMKGRSLAPNVSIYEKLIADHMQKGNDESALQLRNEMAS 885


>gi|242082435|ref|XP_002445986.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
 gi|241942336|gb|EES15481.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
          Length = 567

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/540 (37%), Positives = 334/540 (61%), Gaps = 4/540 (0%)

Query: 196 AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGR--MLEAR 253
           ++  R ++  N  +       D+ +A + F  +P ++VVSW  +L+   R GR  +  AR
Sbjct: 9   SLAARRLLRDNQRISALARAGDVAAARRVFDAMPHRDVVSWNALLTALWRAGRHHLPAAR 68

Query: 254 RLFDQ-MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLD 312
           RLFD+ MP R+VV+WN++IA  +  G ++ A+  F   P+RN  +W  M+ G +R+ + D
Sbjct: 69  RLFDEAMPSRDVVSWNSIIAGCLAHGDLDAASAYFAGAPKRNVATWNAMLAGLLRLGRAD 128

Query: 313 EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGR 372
           +A RL  +MP +N+ + T M+ G  +   +  A ++FD +   ++V W  MI GY + G 
Sbjct: 129 DADRLFGEMPKRNVVSYTTMVDGLARRGEVARAREVFDAMPDRNLVSWAAMISGYVENGM 188

Query: 373 MDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
             EA  LF  M  K++V    MI  Y +   ++ A ++F+ + + ++ +SWN +I+G++ 
Sbjct: 189 FVEATKLFEAMPEKNVVACTAMITSYCKQGDVESARRLFDGI-RAKDVISWNTMIAGYVH 247

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
           N    +A+++  +M +EG K DH+TL   L+AC+ LA L+ G+  H +AIK+   + +  
Sbjct: 248 NGHGEEAMRLHAVMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISF 307

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
            N+L+TMY+KCG +  +EL+F +    D++SWN++IA YA +G   + I LF EM M G+
Sbjct: 308 SNALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEMTGL 367

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
            PD +TF+ VLSAC HVG VD  LKLF+ M+  YAI P  EHYAC++D+LSRAG+L++A 
Sbjct: 368 IPDDITFLSVLSACGHVGKVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKAS 427

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672
             +K M ++    +WG+LLGAC+MH N++LG +A + L + + + +  Y +LSN++A AG
Sbjct: 428 SYIKDMPLEAEKNVWGSLLGACQMHGNVQLGELAAKMLVQSDSESSGPYVILSNIYAAAG 487

Query: 673 RWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            W +V +VR  M+  G +KQPG SW E+ N++H F+ GD       +I + L+ ++  +R
Sbjct: 488 MWGQVNQVRGQMKERGVKKQPGYSWTEIANEVHMFVGGDASHPEMRKIISELRKISFHMR 547



 Score =  225 bits (573), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 129/397 (32%), Positives = 220/397 (55%), Gaps = 22/397 (5%)

Query: 39  SQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMI-----AGYLHNDKV 93
           + ++ +  +  N  ISA A+ G V  AR++F+ MP R++VSWN+++     AG  H   +
Sbjct: 8   ASLAARRLLRDNQRISALARAGDVAAARRVFDAMPHRDVVSWNALLTALWRAGRHH---L 64

Query: 94  KEARELFDK-MFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAK 152
             AR LFD+ M   D+ SW  +I      G+L+ A   F   P K + A WNAM+AG  +
Sbjct: 65  PAARRLFDEAMPSRDVVSWNSIIAGCLAHGDLDAASAYFAGAP-KRNVATWNAMLAGLLR 123

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY 212
           +G  ++A +L   MP +N+VS+ +M+ G  + GE+  A + F+AM +R++VSW  M+ GY
Sbjct: 124 LGRADDADRLFGEMPKRNVVSYTTMVDGLARRGEVARAREVFDAMPDRNLVSWAAMISGY 183

Query: 213 VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
           VE      A K F+ +PE+NVV+   M++ Y + G +  ARRLFD +  ++V++WN MIA
Sbjct: 184 VENGMFVEATKLFEAMPEKNVVACTAMITSYCKQGDVESARRLFDGIRAKDVISWNTMIA 243

Query: 273 AYVQRGQIEEAARL----FIEMPERNPVSWTTMIDGYVRIAKLDEARRL----LDQMPYK 324
            YV  G  EEA RL    F E  + +  +   ++     +A L + +      +  M   
Sbjct: 244 GYVHNGHGEEAMRLHAVMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLES 303

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM- 383
            I+   A+++ Y +   + E+  +F  + T D+V WN +I  YAQ G+  + I LF +M 
Sbjct: 304 GISFSNALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEME 363

Query: 384 ---VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
              +  D +T+ ++++    + ++D ++K+F+ M  +
Sbjct: 364 MTGLIPDDITFLSVLSACGHVGKVDASLKLFDLMSSK 400



 Score =  210 bits (534), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 138/480 (28%), Positives = 227/480 (47%), Gaps = 48/480 (10%)

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKG--ELEKAR 128
            +  R L+  N  I+       V  AR +FD M   D+ SW  ++T   R G   L  AR
Sbjct: 9   SLAARRLLRDNQRISALARAGDVAAARRVFDAMPHRDVVSWNALLTALWRAGRHHLPAAR 68

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
            LFD      D   WN+++AG    G+ + A       P +N+ +WN+ML+G  + G   
Sbjct: 69  RLFDEAMPSRDVVSWNSIIAGCLAHGDLDAASAYFAGAPKRNVATWNAMLAGLLRLGRAD 128

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGR 248
            A + F  M +R+VVS+  M+DG     ++  A + F  +P++N+VSW  M+SGY  NG 
Sbjct: 129 DADRLFGEMPKRNVVSYTTMVDGLARRGEVARAREVFDAMPDRNLVSWAAMISGYVENGM 188

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRI 308
            +EA +LF+ MP +NVVA  AMI +Y ++G +E A RLF  +  ++ +SW TMI GYV  
Sbjct: 189 FVEATKLFEAMPEKNVVACTAMITSYCKQGDVESARRLFDGIRAKDVISWNTMIAGYVHN 248

Query: 309 AKLDEARRLLDQMPYKNIAAQTAMI-------SGYVQNKRMDEANQIFDKIGTHDVVCW- 360
              +EA RL   M  + +    A +       S     ++    + I  K      + + 
Sbjct: 249 GHGEEAMRLHAVMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFS 308

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
           N ++  Y++CG + E+  +F  +  KDIV+WNT+IA YAQ  +    + +F EM      
Sbjct: 309 NALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEME----- 363

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
                 ++G + ++                      T    LSAC H+  +    ++  L
Sbjct: 364 ------MTGLIPDDI---------------------TFLSVLSACGHVGKVDASLKLFDL 396

Query: 481 AIKSGYVNDLFVGN--SLITMYAKCGRIQNAELLFKDADPVDVIS--WNSLIAGYAINGN 536
            + S Y       +   ++ + ++ G+++ A    KD  P++     W SL+    ++GN
Sbjct: 397 -MSSKYAISPRAEHYACIVDILSRAGQLEKASSYIKDM-PLEAEKNVWGSLLGACQMHGN 454



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/356 (27%), Positives = 188/356 (52%), Gaps = 47/356 (13%)

Query: 15  VFNQNKKITQLGKSGR--VEEAIKIFSQ-MSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           V + N  +T L ++GR  +  A ++F + M  ++ V++NS+I+    +G ++ A   F  
Sbjct: 46  VVSWNALLTALWRAGRHHLPAARRLFDEAMPSRDVVSWNSIIAGCLAHGDLDAASAYFAG 105

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
            P+RN+ +WN+M+AG L   +  +A  LF +M + ++ S+  M+    R+GE+ +ARE+F
Sbjct: 106 APKRNVATWNAMLAGLLRLGRADDADRLFGEMPKRNVVSYTTMVDGLARRGEVARAREVF 165

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
           D +P++ +   W AM++GY + G + EA KL +AMP KN+V+  +M++ Y K G++  A 
Sbjct: 166 DAMPDR-NLVSWAAMISGYVENGMFVEATKLFEAMPEKNVVACTAMITSYCKQGDVESAR 224

Query: 192 KFFEAMEERDVVSWNLMLDGYVELDDLDSAWKF----FQKIPEQNVVSWVTMLSG----- 242
           + F+ +  +DV+SWN M+ GYV     + A +     F++  + +  + + +L+      
Sbjct: 225 RLFDGIRAKDVISWNTMIAGYVHNGHGEEAMRLHAVMFREGVKPDHATLIAVLTACSALA 284

Query: 243 ------------------------------YARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
                                         Y++ G + E+  +F  +  +++V+WN +IA
Sbjct: 285 LLRQGKSTHAIAIKAMLESGISFSNALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIA 344

Query: 273 AYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
           AY Q G+ ++   LF EM       + +++ +++     + K+D + +L D M  K
Sbjct: 345 AYAQHGKYQKVIALFHEMEMTGLIPDDITFLSVLSACGHVGKVDASLKLFDLMSSK 400



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 171/323 (52%), Gaps = 22/323 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +  L + GR ++A ++F +M ++N V+Y +M+   A+ G V  AR++F+ MP RNLV
Sbjct: 115 NAMLAGLLRLGRADDADRLFGEMPKRNVVSYTTMVDGLARRGEVARAREVFDAMPDRNLV 174

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           SW +MI+GY+ N    EA +LF+ M   ++ +   MIT Y ++G++E AR LFD +  K 
Sbjct: 175 SWAAMISGYVENGMFVEATKLFEAMPEKNVVACTAMITSYCKQGDVESARRLFDGIRAK- 233

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN----------IVSWNSMLSGYTKNGEMH 188
           D   WN M+AGY   G+  EA +L   M  +           +++  S L+   +    H
Sbjct: 234 DVISWNTMIAGYVHNGHGEEAMRLHAVMFREGVKPDHATLIAVLTACSALALLRQGKSTH 293

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGR 248
             +   +AM E  +   N ++  Y +  ++  +   F  +  +++VSW T+++ YA++G+
Sbjct: 294 AIA--IKAMLESGISFSNALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGK 351

Query: 249 MLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WT 299
             +   LF +M +  +    + + ++++A    G+++ + +LF  M  +  +S     + 
Sbjct: 352 YQKVIALFHEMEMTGLIPDDITFLSVLSACGHVGKVDASLKLFDLMSSKYAISPRAEHYA 411

Query: 300 TMIDGYVRIAKLDEARRLLDQMP 322
            ++D   R  +L++A   +  MP
Sbjct: 412 CIVDILSRAGQLEKASSYIKDMP 434



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 142/295 (48%), Gaps = 20/295 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V +    +  L + G V  A ++F  M  +N V++ +MIS Y +NG   +A KLFE MP+
Sbjct: 142 VVSYTTMVDGLARRGEVARAREVFDAMPDRNLVSWAAMISGYVENGMFVEATKLFEAMPE 201

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           +N+V+  +MI  Y     V+ AR LFD +   D+ SW  MI  Y   G  E+A  L  ++
Sbjct: 202 KNVVACTAMITSYCKQGDVESARRLFDGIRAKDVISWNTMIAGYVHNGHGEEAMRLHAVM 261

Query: 135 PN---KEDTACWNAMVAGYAKIGNYNEAKKL----LDAMPSKNIVSWNSMLSGYTKNGEM 187
                K D A   A++   + +    + K      + AM    I   N++++ Y+K G +
Sbjct: 262 FREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKCGNV 321

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK------IPEQNVVSWVTMLS 241
             +   F  +  +D+VSWN ++  Y +          F +      IP+   ++++++LS
Sbjct: 322 GESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEMTGLIPDD--ITFLSVLS 379

Query: 242 GYARNGRMLEARRLFDQMPIRNVVA-----WNAMIAAYVQRGQIEEAARLFIEMP 291
                G++  + +LFD M  +  ++     +  ++    + GQ+E+A+    +MP
Sbjct: 380 ACGHVGKVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKASSYIKDMP 434


>gi|449530420|ref|XP_004172193.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like, partial [Cucumis sativus]
          Length = 719

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 242/716 (33%), Positives = 391/716 (54%), Gaps = 48/716 (6%)

Query: 25  LGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMI 84
           L K G  + A +   Q S K  V  NS I+   +NG + +A  +F +MP +N VSW +++
Sbjct: 37  LSKRGNFDSATR---QKSSKFLVYCNSQITKLGRNGCIKEAESIFNRMPNKNTVSWTALL 93

Query: 85  AGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWN 144
             Y  N ++ +ARE+F+K+  P++ S+  MIT Y R+  +++A ELF  +P + ++  + 
Sbjct: 94  TAYAENSEINKAREVFNKIPDPNVASYNAMITAYHRRNMVDEAFELFSSMPQR-NSVSYA 152

Query: 145 AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS 204
            M+ G+   G ++ A+KL    P   IVS N +++GY+K G +  A + F+ M E+DVVS
Sbjct: 153 TMITGFVHAGMFDMAEKLHREKPV--IVSSNVLINGYSKVGRVEDAVRIFDGMAEKDVVS 210

Query: 205 WNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV 264
           W+ M+ G   +  +  A K F K+P++NVV+W  M+ GY +   + +   LF  M  R  
Sbjct: 211 WSSMISGLCRVGKIVEARKLFDKMPDRNVVTWTLMIDGYMKMNFLKDGFILFLNMR-REG 269

Query: 265 VAWNAMI--------AAYVQRGQIEEAARLFIEMP-ERNPVSWTTMIDGYVRIAKLDEAR 315
           V  NA           ++ + G+  +   L + +  + +     ++I  Y R   +D A 
Sbjct: 270 VEVNATTLTVLLEACGSFDRYGEGIQIHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAA 329

Query: 316 RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
           +  D M  K+I    ++I+GYVQ+  +++A  +F+ +   DVV W  +I G+A  GR+DE
Sbjct: 330 KQFDLMVKKDIVTWNSLITGYVQSGNLEKAVFLFENMPQKDVVSWTTLICGFASEGRIDE 389

Query: 376 AINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEF 435
            I LF+ M  KD + W  +I+G   I + + A                           F
Sbjct: 390 FIGLFQMMPEKDAIAWTAVISGLVSIEEYEIA---------------------------F 422

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS 495
           H      F+ M Q   K +  TL+C LSA A +A L  G QIH +  K    NDL + NS
Sbjct: 423 HW-----FIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHAIVTKMSMENDLSIQNS 477

Query: 496 LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555
           L++MY+KCG + +A  +F      +V+++N++I G A NG   EA+++F +M  + + P+
Sbjct: 478 LVSMYSKCGNVDDALKMFYYIKVPNVVAYNTIITGLAQNGLGKEALEIFTKMQDDYLVPN 537

Query: 556 PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV 615
            +TF+GVLSAC HVGLV+ G + F+ M  +Y I+P  +HYACM+DLL RAG  DEA  +V
Sbjct: 538 HITFLGVLSACVHVGLVEEGRRYFDLMRSLYDIQPEPDHYACMVDLLCRAGMFDEAVSLV 597

Query: 616 KGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWD 675
             M   P+ G+WG +LGA   H  + +  +A + L ELEP   + Y +LSN+H+ +G   
Sbjct: 598 SSMPFDPHQGVWGAVLGASWTHLRLDVAELAAQNLFELEPNSATPYVILSNLHSISGDER 657

Query: 676 EVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           + E +R+  +  G +K PGCSWI +K+++H F +G        E+   +  LA ++
Sbjct: 658 KHELIRLMKKSRGLKKSPGCSWIILKDEVHLFHAGHQSIKNIKEMTEIIYALAEEV 713



 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 156/509 (30%), Positives = 269/509 (52%), Gaps = 51/509 (10%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N +IT+LG++G ++EA  IF++M  KNTV++ ++++AYA+N  +N AR++F ++P  N+ 
Sbjct: 59  NSQITKLGRNGCIKEAESIFNRMPNKNTVSWTALLTAYAENSEINKAREVFNKIPDPNVA 118

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           S+N+MI  Y   + V EA ELF  M + +  S+A MIT +   G  + A +L      K 
Sbjct: 119 SYNAMITAYHRRNMVDEAFELFSSMPQRNSVSYATMITGFVHAGMFDMAEKLHR---EKP 175

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
                N ++ GY+K+G   +A ++ D M  K++VSW+SM+SG  + G++  A K F+ M 
Sbjct: 176 VIVSSNVLINGYSKVGRVEDAVRIFDGMAEKDVVSWSSMISGLCRVGKIVEARKLFDKMP 235

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSG------------ 242
           +R+VV+W LM+DGY++++ L   +  F  +     E N  +   +L              
Sbjct: 236 DRNVVTWTLMIDGYMKMNFLKDGFILFLNMRREGVEVNATTLTVLLEACGSFDRYGEGIQ 295

Query: 243 -----------------------YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ 279
                                  Y+R   +  A + FD M  +++V WN++I  YVQ G 
Sbjct: 296 IHGLVLSLGFDVDAYLANSIITMYSRCYSIDAAAKQFDLMVKKDIVTWNSLITGYVQSGN 355

Query: 280 IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQN 339
           +E+A  LF  MP+++ VSWTT+I G+    ++DE   L   MP K+  A TA+ISG V  
Sbjct: 356 LEKAVFLFENMPQKDVVSWTTLICGFASEGRIDEFIGLFQMMPEKDAIAWTAVISGLVSI 415

Query: 340 KRMDEANQIFDK----IGTHDVVCWNVMIKGYAQCGRMDEAINLF----RQMVNKDIVTW 391
           +  + A   F K    +   +    + ++   A    +++ + +     +  +  D+   
Sbjct: 416 EEYEIAFHWFIKMLQSVIKPNAFTLSCVLSAGASMAILNQGLQIHAIVTKMSMENDLSIQ 475

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
           N++++ Y++   +DDA+K+F  + K  N V++N +I+G  QN    +AL+IF  M  +  
Sbjct: 476 NSLVSMYSKCGNVDDALKMFYYI-KVPNVVAYNTIITGLAQNGLGKEALEIFTKMQDDYL 534

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHL 480
             +H T    LSAC H+  ++ GR+   L
Sbjct: 535 VPNHITFLGVLSACVHVGLVEEGRRYFDL 563


>gi|302767812|ref|XP_002967326.1| hypothetical protein SELMODRAFT_30579 [Selaginella moellendorffii]
 gi|300165317|gb|EFJ31925.1| hypothetical protein SELMODRAFT_30579 [Selaginella moellendorffii]
          Length = 569

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 209/569 (36%), Positives = 342/569 (60%), Gaps = 4/569 (0%)

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           DL +W  MIT Y + G L+ A+ +F  +P + +   WNA++ G A+  +   AKK+ D+M
Sbjct: 1   DLVAWNAMITAYAQNGNLQVAQAMFFRMPAR-NFVSWNAIIDGCAQGQDEALAKKVFDSM 59

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
           P + +VSW +M++ Y+++G +  A      M   ++VSWN+M+  + +   ++ A + F 
Sbjct: 60  PQREVVSWTAMVATYSQSGRLEEARALLSKMPALNIVSWNVMIQAFADNLLVEDAKERFD 119

Query: 227 KIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ--IEEAA 284
           + PE + VSW  +++ YA+  ++  AR  FD+MP R+VV+W  MI +Y Q GQ  +++A 
Sbjct: 120 RAPEHDFVSWNAIITAYAQTSQIFLARAAFDRMPQRDVVSWATMIQSYAQEGQPSMDQAK 179

Query: 285 RLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDE 344
            +F   P+RN VSW  MI GY    ++ +A+ + D MP K++ +  A+++GY+QN+++ E
Sbjct: 180 EIFDRAPQRNVVSWNVMITGYSASGRIKQAKAVFDTMPQKDVISWAALVAGYLQNQQLAE 239

Query: 345 ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQM 404
           A ++FD++   + VC N ++  +A   RM E  +LF +M  + + +W+TM+ GYAQ    
Sbjct: 240 AKRVFDRMPATNAVCCNTVMASFAGADRMPETRSLFDRMPERTLASWSTMLGGYAQSGHT 299

Query: 405 DDAVKIFEEMGKR-RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS 463
             A   F+ M +R  + VSWNALI+G L N     AL++F+ M + G   D ++ A AL+
Sbjct: 300 ASAKSFFDRMPQRDHDLVSWNALIAGHLDNGLDERALQLFLEMDRRGCSPDPASYASALA 359

Query: 464 ACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
           ACA LA+L   R IH    K+G   D FV N+L+  Y K GR+ +AEL+F+    VDV++
Sbjct: 360 ACAGLASLGAARDIHWRLCKAGLETDAFVHNALVDFYGKSGRMADAELVFQSLASVDVVT 419

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMT 583
           WN+L AG++  G+    + L   +  +G+ PD +TF+ +L+A  H GLVD G + F  M 
Sbjct: 420 WNALAAGFSRQGSYRLVVDLLWAIKDQGLEPDGITFLALLAAYGHAGLVDHGRRAFAAMV 479

Query: 584 EVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLG 643
           E Y IE  +EHY C++D+L RA RL+EA   V  M  +P++  W T+L  C   +N+ + 
Sbjct: 480 ESYRIEAGIEHYHCLVDMLGRANRLEEALAEVAAMPHRPSSVTWTTVLSTCVKWKNLDVA 539

Query: 644 RIAVEKLSELEPQKTSCYALLSNMHAEAG 672
            +A E L  ++P   + Y L++N++  AG
Sbjct: 540 SVAFESLLGIDPDGPAAYVLMANVYGSAG 568



 Score =  272 bits (696), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 161/563 (28%), Positives = 283/563 (50%), Gaps = 52/563 (9%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           + V +N+MI+AYA+NG +  A+ +F +MP RN VSWN++I G         A+++FD M 
Sbjct: 1   DLVAWNAMITAYAQNGNLQVAQAMFFRMPARNFVSWNAIIDGCAQGQDEALAKKVFDSMP 60

Query: 105 RPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLD 164
           + ++ SW  M+  Y++ G LE+AR L   +P   +   WN M+  +A      +AK+  D
Sbjct: 61  QREVVSWTAMVATYSQSGRLEEARALLSKMP-ALNIVSWNVMIQAFADNLLVEDAKERFD 119

Query: 165 AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE--LDDLDSAW 222
             P  + VSWN++++ Y +  ++ LA   F+ M +RDVVSW  M+  Y +     +D A 
Sbjct: 120 RAPEHDFVSWNAIITAYAQTSQIFLARAAFDRMPQRDVVSWATMIQSYAQEGQPSMDQAK 179

Query: 223 KFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEE 282
           + F + P++NVVSW  M++GY+ +GR+ +A+ +FD MP ++V++W A++A Y+Q  Q+ E
Sbjct: 180 EIFDRAPQRNVVSWNVMITGYSASGRIKQAKAVFDTMPQKDVISWAALVAGYLQNQQLAE 239

Query: 283 AARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRM 342
           A R+F  MP  N V   T++  +    ++ E R L D+MP + +A+ + M+ GY Q+   
Sbjct: 240 AKRVFDRMPATNAVCCNTVMASFAGADRMPETRSLFDRMPERTLASWSTMLGGYAQSGHT 299

Query: 343 DEANQIFDKIGT--HDVVCWNVMIKGYAQCGRMDEAINLFRQM----------------- 383
             A   FD++    HD+V WN +I G+   G  + A+ LF +M                 
Sbjct: 300 ASAKSFFDRMPQRDHDLVSWNALIAGHLDNGLDERALQLFLEMDRRGCSPDPASYASALA 359

Query: 384 ----------------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
                                 +  D    N ++  Y +  +M DA  +F+ +    + V
Sbjct: 360 ACAGLASLGAARDIHWRLCKAGLETDAFVHNALVDFYGKSGRMADAELVFQSLAS-VDVV 418

Query: 422 SWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLA 481
           +WNAL +GF +   +   + +   +  +G + D  T    L+A  H   +  GR+     
Sbjct: 419 TWNALAAGFSRQGSYRLVVDLLWAIKDQGLEPDGITFLALLAAYGHAGLVDHGRRAFAAM 478

Query: 482 IKSGYVN-DLFVGNSLITMYAKCGRIQN--AELLFKDADPVDVISWNSLIAGYAINGNAT 538
           ++S  +   +   + L+ M  +  R++   AE+      P  V +W ++++      N  
Sbjct: 479 VESYRIEAGIEHYHCLVDMLGRANRLEEALAEVAAMPHRPSSV-TWTTVLSTCVKWKNLD 537

Query: 539 EAIKLFEEMVMEGVAPD-PVTFI 560
            A   FE ++  G+ PD P  ++
Sbjct: 538 VASVAFESLL--GIDPDGPAAYV 558



 Score =  249 bits (636), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 131/416 (31%), Positives = 227/416 (54%), Gaps = 17/416 (4%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V +    +    +SGR+EEA  + S+M   N V++N MI A+A N  V DA++ F++ P+
Sbjct: 64  VVSWTAMVATYSQSGRLEEARALLSKMPALNIVSWNVMIQAFADNLLVEDAKERFDRAPE 123

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGE--LEKARELFD 132
            + VSWN++I  Y    ++  AR  FD+M + D+ SWA MI  Y ++G+  +++A+E+FD
Sbjct: 124 HDFVSWNAIITAYAQTSQIFLARAAFDRMPQRDVVSWATMIQSYAQEGQPSMDQAKEIFD 183

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
             P + +   WN M+ GY+  G   +AK + D MP K+++SW ++++GY +N ++  A +
Sbjct: 184 RAPQR-NVVSWNVMITGYSASGRIKQAKAVFDTMPQKDVISWAALVAGYLQNQQLAEAKR 242

Query: 193 FFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA 252
            F+ M   + V  N ++  +   D +      F ++PE+ + SW TML GYA++G    A
Sbjct: 243 VFDRMPATNAVCCNTVMASFAGADRMPETRSLFDRMPERTLASWSTMLGGYAQSGHTASA 302

Query: 253 RRLFDQMPIR--NVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYV 306
           +  FD+MP R  ++V+WNA+IA ++  G  E A +LF+EM  R    +P S+ + +    
Sbjct: 303 KSFFDRMPQRDHDLVSWNALIAGHLDNGLDERALQLFLEMDRRGCSPDPASYASALAACA 362

Query: 307 RIAKLDEAR----RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNV 362
            +A L  AR    RL       +     A++  Y ++ RM +A  +F  + + DVV WN 
Sbjct: 363 GLASLGAARDIHWRLCKAGLETDAFVHNALVDFYGKSGRMADAELVFQSLASVDVVTWNA 422

Query: 363 MIKGYAQCGRMDEAINLF----RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           +  G+++ G     ++L      Q +  D +T+  ++A Y     +D   + F  M
Sbjct: 423 LAAGFSRQGSYRLVVDLLWAIKDQGLEPDGITFLALLAAYGHAGLVDHGRRAFAAM 478



 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 128/412 (31%), Positives = 225/412 (54%), Gaps = 16/412 (3%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKV 93
           A K+F  M Q+  V++ +M++ Y+++GR+ +AR L  +MP  N+VSWN MI  +  N  V
Sbjct: 52  AKKVFDSMPQREVVSWTAMVATYSQSGRLEEARALLSKMPALNIVSWNVMIQAFADNLLV 111

Query: 94  KEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKI 153
           ++A+E FD+    D  SW  +IT Y +  ++  AR  FD +P + D   W  M+  YA+ 
Sbjct: 112 EDAKERFDRAPEHDFVSWNAIITAYAQTSQIFLARAAFDRMPQR-DVVSWATMIQSYAQE 170

Query: 154 G--NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
           G  + ++AK++ D  P +N+VSWN M++GY+ +G +  A   F+ M ++DV+SW  ++ G
Sbjct: 171 GQPSMDQAKEIFDRAPQRNVVSWNVMITGYSASGRIKQAKAVFDTMPQKDVISWAALVAG 230

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
           Y++   L  A + F ++P  N V   T+++ +A   RM E R LFD+MP R + +W+ M+
Sbjct: 231 YLQNQQLAEAKRVFDRMPATNAVCCNTVMASFAGADRMPETRSLFDRMPERTLASWSTML 290

Query: 272 AAYVQRGQIEEAARLFIEMPERNP--VSWTTMIDGYVRIAKLDEARRLLDQMPYK----- 324
             Y Q G    A   F  MP+R+   VSW  +I G++     + A +L  +M  +     
Sbjct: 291 GGYAQSGHTASAKSFFDRMPQRDHDLVSWNALIAGHLDNGLDERALQLFLEMDRRGCSPD 350

Query: 325 --NIAAQTAMISGYVQNKRMDEANQIFDKIGTH-DVVCWNVMIKGYAQCGRMDEAINLFR 381
             + A+  A  +G        + +    K G   D    N ++  Y + GRM +A  +F+
Sbjct: 351 PASYASALAACAGLASLGAARDIHWRLCKAGLETDAFVHNALVDFYGKSGRMADAELVFQ 410

Query: 382 QMVNKDIVTWNTMIAGYAQ---IRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
            + + D+VTWN + AG+++    R + D +   ++ G   + +++ AL++ +
Sbjct: 411 SLASVDVVTWNALAAGFSRQGSYRLVVDLLWAIKDQGLEPDGITFLALLAAY 462



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 176/357 (49%), Gaps = 19/357 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  IT    SGR+++A  +F  M QK+ +++ ++++ Y +N ++ +A+++F++MP 
Sbjct: 190 VVSWNVMITGYSASGRIKQAKAVFDTMPQKDVISWAALVAGYLQNQQLAEAKRVFDRMPA 249

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
            N V  N+++A +   D++ E R LFD+M    L SW+ M+  Y + G    A+  FD +
Sbjct: 250 TNAVCCNTVMASFAGADRMPETRSLFDRMPERTLASWSTMLGGYAQSGHTASAKSFFDRM 309

Query: 135 PNKE-DTACWNAMVAGYAKIGNYNEAKKLLDAMP----SKNIVSWNSMLSGYTKNGEMHL 189
           P ++ D   WNA++AG+   G    A +L   M     S +  S+ S L+       +  
Sbjct: 310 PQRDHDLVSWNALIAGHLDNGLDERALQLFLEMDRRGCSPDPASYASALAACAGLASLGA 369

Query: 190 AS----KFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR 245
           A     +  +A  E D    N ++D Y +   +  A   FQ +   +VV+W  + +G++R
Sbjct: 370 ARDIHWRLCKAGLETDAFVHNALVDFYGKSGRMADAELVFQSLASVDVVTWNALAAGFSR 429

Query: 246 NGRMLEARRLF----DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS---- 297
            G       L     DQ    + + + A++AAY   G ++   R F  M E   +     
Sbjct: 430 QGSYRLVVDLLWAIKDQGLEPDGITFLALLAAYGHAGLVDHGRRAFAAMVESYRIEAGIE 489

Query: 298 -WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ-TAMISGYVQNKRMDEANQIFDKI 352
            +  ++D   R  +L+EA   +  MP++  +   T ++S  V+ K +D A+  F+ +
Sbjct: 490 HYHCLVDMLGRANRLEEALAEVAAMPHRPSSVTWTTVLSTCVKWKNLDVASVAFESL 546


>gi|413925171|gb|AFW65103.1| hypothetical protein ZEAMMB73_773985 [Zea mays]
          Length = 567

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/540 (37%), Positives = 337/540 (62%), Gaps = 4/540 (0%)

Query: 196 AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGR--MLEAR 253
           ++  R ++  N  +       D+ +A + F  +  ++VVSW  +L+   R GR  +  AR
Sbjct: 9   SLAARRLLRDNQRISALARAGDVAAARRVFDAMTHRDVVSWNALLTALWRAGRHHLPAAR 68

Query: 254 RLFDQ-MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLD 312
           RLFD+ MP R+VV+WN++IA  +  G ++ A+  F   PERN  +W  M+ G VR+ ++ 
Sbjct: 69  RLFDEAMPSRDVVSWNSIIAGCLAHGDLDAASAYFAGAPERNVATWNAMLAGLVRLGRVV 128

Query: 313 EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGR 372
           +A+RL D+MP +N+ + T M+    +   ++ A ++FD +   ++V W  MI G  + G 
Sbjct: 129 DAQRLFDEMPERNVVSYTTMVDWLARRGEVERAREVFDSMPDRNLVSWAAMISGCVENGM 188

Query: 373 MDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
             EA  LF  M  K++V    MI G+ +   +D A ++F+ + + ++ +SWNA+I+G++ 
Sbjct: 189 FVEARELFEAMPEKNVVACTAMITGHCKQGDVDSARRLFDGI-RAKDVISWNAMIAGYVH 247

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
           N    +A+++  LM +EG K DH+TL   L+AC+ LA L+ G+  H +AIK+   + +  
Sbjct: 248 NGHGEEAMRLHALMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISF 307

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
            N+L+TMY+KCG +  +EL+F +    D++SWN++IA YA +G   + I LF EM + G+
Sbjct: 308 SNALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEVTGL 367

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
            PD +TF+ VLSAC HVG+VD  LKLF+ M+  YAI P  EHYAC++D+LSRAG+L++A 
Sbjct: 368 IPDDITFLSVLSACGHVGMVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKAS 427

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672
             +K M +K    +WG+LLGAC++H N++LG +A + L + + Q +  Y +LSN++A AG
Sbjct: 428 SYIKHMPLKAEKNVWGSLLGACQIHGNVQLGELAAKMLVQSDSQSSGPYVILSNIYAAAG 487

Query: 673 RWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            W +V ++R  M+  G +KQPG SW E+ N++H F+ GD       +I + L+ ++  +R
Sbjct: 488 MWGQVNQIRGQMKERGVKKQPGYSWTEIGNEVHMFVGGDASHPEMRKIISELRKISFHMR 547



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 125/397 (31%), Positives = 219/397 (55%), Gaps = 22/397 (5%)

Query: 39  SQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMI-----AGYLHNDKV 93
           + ++ +  +  N  ISA A+ G V  AR++F+ M  R++VSWN+++     AG  H   +
Sbjct: 8   ASLAARRLLRDNQRISALARAGDVAAARRVFDAMTHRDVVSWNALLTALWRAGRHH---L 64

Query: 94  KEARELFDK-MFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAK 152
             AR LFD+ M   D+ SW  +I      G+L+ A   F   P + + A WNAM+AG  +
Sbjct: 65  PAARRLFDEAMPSRDVVSWNSIIAGCLAHGDLDAASAYFAGAPER-NVATWNAMLAGLVR 123

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY 212
           +G   +A++L D MP +N+VS+ +M+    + GE+  A + F++M +R++VSW  M+ G 
Sbjct: 124 LGRVVDAQRLFDEMPERNVVSYTTMVDWLARRGEVERAREVFDSMPDRNLVSWAAMISGC 183

Query: 213 VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
           VE      A + F+ +PE+NVV+   M++G+ + G +  ARRLFD +  ++V++WNAMIA
Sbjct: 184 VENGMFVEARELFEAMPEKNVVACTAMITGHCKQGDVDSARRLFDGIRAKDVISWNAMIA 243

Query: 273 AYVQRGQIEEAARL----FIEMPERNPVSWTTMIDGYVRIAKLDEARRL----LDQMPYK 324
            YV  G  EEA RL    F E  + +  +   ++     +A L + +      +  M   
Sbjct: 244 GYVHNGHGEEAMRLHALMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLES 303

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM- 383
            I+   A+++ Y +   + E+  +F  + T D+V WN +I  YAQ G+  + I LF +M 
Sbjct: 304 GISFSNALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEME 363

Query: 384 ---VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
              +  D +T+ ++++    +  +D ++K+F+ M  +
Sbjct: 364 VTGLIPDDITFLSVLSACGHVGMVDASLKLFDLMSSK 400



 Score =  205 bits (521), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 138/460 (30%), Positives = 227/460 (49%), Gaps = 23/460 (5%)

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKG--ELEKARE 129
           +  R L+  N  I+       V  AR +FD M   D+ SW  ++T   R G   L  AR 
Sbjct: 10  LAARRLLRDNQRISALARAGDVAAARRVFDAMTHRDVVSWNALLTALWRAGRHHLPAARR 69

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           LFD      D   WN+++AG    G+ + A       P +N+ +WN+ML+G  + G +  
Sbjct: 70  LFDEAMPSRDVVSWNSIIAGCLAHGDLDAASAYFAGAPERNVATWNAMLAGLVRLGRVVD 129

Query: 190 ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRM 249
           A + F+ M ER+VVS+  M+D      +++ A + F  +P++N+VSW  M+SG   NG  
Sbjct: 130 AQRLFDEMPERNVVSYTTMVDWLARRGEVERAREVFDSMPDRNLVSWAAMISGCVENGMF 189

Query: 250 LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIA 309
           +EAR LF+ MP +NVVA  AMI  + ++G ++ A RLF  +  ++ +SW  MI GYV   
Sbjct: 190 VEARELFEAMPEKNVVACTAMITGHCKQGDVDSARRLFDGIRAKDVISWNAMIAGYVHNG 249

Query: 310 KLDEARRLLDQMPYKNIAAQTAMI-------SGYVQNKRMDEANQIFDKIGTHDVVCW-N 361
             +EA RL   M  + +    A +       S     ++    + I  K      + + N
Sbjct: 250 HGEEAMRLHALMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFSN 309

Query: 362 VMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRR 418
            ++  Y++CG + E+  +F  +  KDIV+WNT+IA YAQ  +    + +F EM   G   
Sbjct: 310 ALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEVTGLIP 369

Query: 419 NTVSWNALISGFLQNEFHLDALKIFVLMTQE---GKKADHSTLACALSACAHLAALQLGR 475
           + +++ +++S          +LK+F LM+ +     +A+H   AC +   +    L+   
Sbjct: 370 DDITFLSVLSACGHVGMVDASLKLFDLMSSKYAISPRAEH--YACIVDILSRAGQLEKAS 427

Query: 476 Q-IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
             I H+ +K+    +  V  SL+      G +Q  EL  K
Sbjct: 428 SYIKHMPLKA----EKNVWGSLLGACQIHGNVQLGELAAK 463



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 104/387 (26%), Positives = 199/387 (51%), Gaps = 78/387 (20%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGR--VNDARKLF-EQ 71
           +   N++I+ L ++G V  A ++F  M+ ++ V++N++++A  + GR  +  AR+LF E 
Sbjct: 15  LLRDNQRISALARAGDVAAARRVFDAMTHRDVVSWNALLTALWRAGRHHLPAARRLFDEA 74

Query: 72  MPQRNLVSWNSMIAGYL-HND------------------------------KVKEARELF 100
           MP R++VSWNS+IAG L H D                              +V +A+ LF
Sbjct: 75  MPSRDVVSWNSIIAGCLAHGDLDAASAYFAGAPERNVATWNAMLAGLVRLGRVVDAQRLF 134

Query: 101 DKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
           D+M   ++ S+  M+    R+GE+E+ARE+FD +P++ +   W AM++G  + G + EA+
Sbjct: 135 DEMPERNVVSYTTMVDWLARRGEVERAREVFDSMPDR-NLVSWAAMISGCVENGMFVEAR 193

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
           +L +AMP KN+V+  +M++G+ K G++  A + F+ +  +DV+SWN M+ GYV     + 
Sbjct: 194 ELFEAMPEKNVVACTAMITGHCKQGDVDSARRLFDGIRAKDVISWNAMIAGYVHNGHGEE 253

Query: 221 AWKF----FQKIPEQNVVSWVTMLSG---------------------------------- 242
           A +     F++  + +  + + +L+                                   
Sbjct: 254 AMRLHALMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFSNALMT 313

Query: 243 -YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVS 297
            Y++ G + E+  +F  +  +++V+WN +IAAY Q G+ ++   LF EM       + ++
Sbjct: 314 MYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEVTGLIPDDIT 373

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYK 324
           + +++     +  +D + +L D M  K
Sbjct: 374 FLSVLSACGHVGMVDASLKLFDLMSSK 400



 Score =  149 bits (375), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 172/325 (52%), Gaps = 22/325 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +  L + GRV +A ++F +M ++N V+Y +M+   A+ G V  AR++F+ MP RNLV
Sbjct: 115 NAMLAGLVRLGRVVDAQRLFDEMPERNVVSYTTMVDWLARRGEVERAREVFDSMPDRNLV 174

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           SW +MI+G + N    EARELF+ M   ++ +   MIT + ++G+++ AR LFD +  K 
Sbjct: 175 SWAAMISGCVENGMFVEARELFEAMPEKNVVACTAMITGHCKQGDVDSARRLFDGIRAK- 233

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN----------IVSWNSMLSGYTKNGEMH 188
           D   WNAM+AGY   G+  EA +L   M  +           +++  S L+   +    H
Sbjct: 234 DVISWNAMIAGYVHNGHGEEAMRLHALMFREGVKPDHATLIAVLTACSALALLRQGKSTH 293

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGR 248
             +   +AM E  +   N ++  Y +  ++  +   F  +  +++VSW T+++ YA++G+
Sbjct: 294 AIA--IKAMLESGISFSNALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGK 351

Query: 249 MLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WT 299
             +   LF +M +  +    + + ++++A    G ++ + +LF  M  +  +S     + 
Sbjct: 352 YQKVIALFHEMEVTGLIPDDITFLSVLSACGHVGMVDASLKLFDLMSSKYAISPRAEHYA 411

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYK 324
            ++D   R  +L++A   +  MP K
Sbjct: 412 CIVDILSRAGQLEKASSYIKHMPLK 436



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 166/368 (45%), Gaps = 55/368 (14%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V +    +  L + G VE A ++F  M  +N V++ +MIS   +NG   +AR+LFE MP+
Sbjct: 142 VVSYTTMVDWLARRGEVERAREVFDSMPDRNLVSWAAMISGCVENGMFVEARELFEAMPE 201

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           +N+V+  +MI G+     V  AR LFD +   D+ SW  MI  Y   G  E+A  L  L+
Sbjct: 202 KNVVACTAMITGHCKQGDVDSARRLFDGIRAKDVISWNAMIAGYVHNGHGEEAMRLHALM 261

Query: 135 ------PNKED-----TAC---------------------------WNAMVAGYAKIGNY 156
                 P+        TAC                            NA++  Y+K GN 
Sbjct: 262 FREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKCGNV 321

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGY 212
            E++ +   + +K+IVSWN++++ Y ++G+       F  ME      D +++  +L   
Sbjct: 322 GESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEVTGLIPDDITFLSVLSAC 381

Query: 213 VELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPI---RNV 264
             +  +D++ K F  +  +  +S     +  ++   +R G++ +A      MP+   +NV
Sbjct: 382 GHVGMVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKASSYIKHMPLKAEKNV 441

Query: 265 VAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
             W +++ A    G +   E AA++ ++   ++   +  + + Y       +  ++  QM
Sbjct: 442 --WGSLLGACQIHGNVQLGELAAKMLVQSDSQSSGPYVILSNIYAAAGMWGQVNQIRGQM 499

Query: 322 PYKNIAAQ 329
             + +  Q
Sbjct: 500 KERGVKKQ 507


>gi|297826975|ref|XP_002881370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327209|gb|EFH57629.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/561 (37%), Positives = 346/561 (61%), Gaps = 9/561 (1%)

Query: 177 MLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI-PEQNVVS 235
           ++    K G++  A K F+ + ERDVV+W  ++ GY++L ++  A + F ++   +NVV+
Sbjct: 52  LIGKLCKVGKLAEARKLFDGLPERDVVTWTDVITGYIKLGNMREARELFDRVDSRKNVVT 111

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
           W  M+SGY R+ ++  A  LF +MP RN+V+WN MI  Y Q G+I++A  LF EMPERN 
Sbjct: 112 WTAMVSGYLRSKQLSVAETLFQEMPERNIVSWNTMIDGYAQSGRIDKALELFDEMPERNT 171

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
           VSW TMI   V+  ++DEA  L ++MP K++ + TAM+ G  +N ++DEA ++FD +   
Sbjct: 172 VSWNTMIKALVQRGRIDEAMNLFERMPIKDVISWTAMVDGLAKNGKVDEARRLFDCMPER 231

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMG 415
           +++ WN MI GY    R+DEA  LF+ M  +D  +WNTMI G+ + R+++ A  +F+ M 
Sbjct: 232 NIISWNAMITGYTYNNRIDEADQLFQVMPERDFASWNTMITGFIRNREINRACGLFDRM- 290

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG-KKADHSTLACALSACAHLAALQLG 474
            ++N +SW A+I+G+++N+ + +ALK+F  M ++G  K +  T    LSAC+ LA L  G
Sbjct: 291 PQKNVISWTAMITGYVENKENEEALKVFSKMLRDGCVKPNVGTYVSILSACSDLAGLVEG 350

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYA 532
           +QIH L  KS +  +  V ++LI MY+K G +  A  +F +      D+ISWNS+IA YA
Sbjct: 351 QQIHQLISKSVHQENEVVTSALINMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYA 410

Query: 533 INGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLV 592
            +G+  EAI+++++M   G  P  VT++ +L ACSH GLV+ G++ F+ +    ++    
Sbjct: 411 HHGHGKEAIEMYDQMRKHGFKPSEVTYLNLLFACSHAGLVEKGMEFFKELVRDESLPLRE 470

Query: 593 EHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSE 652
           EHY C++DL  RAGRL +    +     + +   +G +L AC +H  + + +  V+K+ E
Sbjct: 471 EHYTCLVDLCGRAGRLKDVLNFINCDDARLSRSFYGAILSACNVHSEVSIAKEVVKKVLE 530

Query: 653 LEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDP 712
                   Y ++SN++A +G+ ++  ++R+ M+  G +KQPGCSW+++ NQ H F+ GD 
Sbjct: 531 TGSDDAGTYVMMSNIYAASGKREKAAEMRMKMKEKGLKKQPGCSWVKIGNQTHLFVVGD- 589

Query: 713 KQCRTAEICNTLKTLAAQIRN 733
              ++      L ++ + +RN
Sbjct: 590 ---KSHPQFEALDSIVSDLRN 607



 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 142/393 (36%), Positives = 237/393 (60%), Gaps = 10/393 (2%)

Query: 92  KVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYA 151
           K+ EAR+LFD +   D+ +W  +IT Y + G + +ARELFD + ++++   W AMV+GY 
Sbjct: 61  KLAEARKLFDGLPERDVVTWTDVITGYIKLGNMREARELFDRVDSRKNVVTWTAMVSGYL 120

Query: 152 KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
           +    + A+ L   MP +NIVSWN+M+ GY ++G +  A + F+ M ER+ VSWN M+  
Sbjct: 121 RSKQLSVAETLFQEMPERNIVSWNTMIDGYAQSGRIDKALELFDEMPERNTVSWNTMIKA 180

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
            V+   +D A   F+++P ++V+SW  M+ G A+NG++ EARRLFD MP RN+++WNAMI
Sbjct: 181 LVQRGRIDEAMNLFERMPIKDVISWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMI 240

Query: 272 AAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
             Y    +I+EA +LF  MPER+  SW TMI G++R  +++ A  L D+MP KN+ + TA
Sbjct: 241 TGYTYNNRIDEADQLFQVMPERDFASWNTMITGFIRNREINRACGLFDRMPQKNVISWTA 300

Query: 332 MISGYVQNKRMDEANQIFDKIGTHDVVCWNV--MIKGYAQCGRMDEAI--NLFRQMVNKD 387
           MI+GYV+NK  +EA ++F K+     V  NV   +   + C  +   +      Q+++K 
Sbjct: 301 MITGYVENKENEEALKVFSKMLRDGCVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKS 360

Query: 388 I-----VTWNTMIAGYAQIRQMDDAVKIFEE-MGKRRNTVSWNALISGFLQNEFHLDALK 441
           +     V  + +I  Y++  ++  A K+F+  +  +R+ +SWN++I+ +  +    +A++
Sbjct: 361 VHQENEVVTSALINMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIE 420

Query: 442 IFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
           ++  M + G K    T    L AC+H   ++ G
Sbjct: 421 MYDQMRKHGFKPSEVTYLNLLFACSHAGLVEKG 453



 Score =  251 bits (642), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 129/394 (32%), Positives = 225/394 (57%), Gaps = 17/394 (4%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           I+S  S+        +I    K G++ +ARKLF+ +P+R++V+W  +I GY+    ++EA
Sbjct: 37  IYSSSSKPRVPRPEWLIGKLCKVGKLAEARKLFDGLPERDVVTWTDVITGYIKLGNMREA 96

Query: 97  RELFDKM-FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGN 155
           RELFD++  R ++ +W  M++ Y R  +L  A  LF  +P + +   WN M+ GYA+ G 
Sbjct: 97  RELFDRVDSRKNVVTWTAMVSGYLRSKQLSVAETLFQEMPER-NIVSWNTMIDGYAQSGR 155

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
            ++A +L D MP +N VSWN+M+    + G +  A   FE M  +DV+SW  M+DG  + 
Sbjct: 156 IDKALELFDEMPERNTVSWNTMIKALVQRGRIDEAMNLFERMPIKDVISWTAMVDGLAKN 215

Query: 216 DDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
             +D A + F  +PE+N++SW  M++GY  N R+ EA +LF  MP R+  +WN MI  ++
Sbjct: 216 GKVDEARRLFDCMPERNIISWNAMITGYTYNNRIDEADQLFQVMPERDFASWNTMITGFI 275

Query: 276 QRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM-----------PYK 324
           +  +I  A  LF  MP++N +SWT MI GYV   + +EA ++  +M            Y 
Sbjct: 276 RNREINRACGLFDRMPQKNVISWTAMITGYVENKENEEALKVFSKMLRDGCVKPNVGTYV 335

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ-- 382
           +I +  + ++G V+ +++ +   I   +   + V  + +I  Y++ G +  A  +F    
Sbjct: 336 SILSACSDLAGLVEGQQIHQL--ISKSVHQENEVVTSALINMYSKSGELIAARKMFDNGL 393

Query: 383 MVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
           +  +D+++WN+MIA YA      +A++++++M K
Sbjct: 394 VCQRDLISWNSMIAVYAHHGHGKEAIEMYDQMRK 427



 Score =  225 bits (573), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 124/365 (33%), Positives = 207/365 (56%), Gaps = 26/365 (7%)

Query: 22  ITQLGKSGRVEEAIKIFSQM-SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSW 80
           IT   K G + EA ++F ++ S+KN VT+ +M+S Y ++ +++ A  LF++MP+RN+VSW
Sbjct: 84  ITGYIKLGNMREARELFDRVDSRKNVVTWTAMVSGYLRSKQLSVAETLFQEMPERNIVSW 143

Query: 81  NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
           N+MI GY  + ++ +A ELFD+M   +  SW  MI    ++G +++A  LF+ +P K D 
Sbjct: 144 NTMIDGYAQSGRIDKALELFDEMPERNTVSWNTMIKALVQRGRIDEAMNLFERMPIK-DV 202

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER 200
             W AMV G AK G  +EA++L D MP +NI+SWN+M++GYT N  +  A + F+ M ER
Sbjct: 203 ISWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYTYNNRIDEADQLFQVMPER 262

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
           D  SWN M+ G++   +++ A   F ++P++NV+SW  M++GY  N    EA ++F +M 
Sbjct: 263 DFASWNTMITGFIRNREINRACGLFDRMPQKNVISWTAMITGYVENKENEEALKVFSKML 322

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
               V  N  +  YV                  + +S  + + G V   ++ +   +   
Sbjct: 323 RDGCVKPN--VGTYV------------------SILSACSDLAGLVEGQQIHQL--ISKS 360

Query: 321 MPYKNIAAQTAMISGYVQNKRMDEANQIFDK--IGTHDVVCWNVMIKGYAQCGRMDEAIN 378
           +  +N    +A+I+ Y ++  +  A ++FD   +   D++ WN MI  YA  G   EAI 
Sbjct: 361 VHQENEVVTSALINMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIE 420

Query: 379 LFRQM 383
           ++ QM
Sbjct: 421 MYDQM 425



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 99/283 (34%), Positives = 167/283 (59%), Gaps = 12/283 (4%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I    +SGR+++A+++F +M ++NTV++N+MI A  + GR+++A  LFE+MP ++++
Sbjct: 144 NTMIDGYAQSGRIDKALELFDEMPERNTVSWNTMIKALVQRGRIDEAMNLFERMPIKDVI 203

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           SW +M+ G   N KV EAR LFD M   ++ SW  MIT YT    +++A +LF ++P + 
Sbjct: 204 SWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYTYNNRIDEADQLFQVMPER- 262

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           D A WN M+ G+ +    N A  L D MP KN++SW +M++GY +N E   A K F  M 
Sbjct: 263 DFASWNTMITGFIRNREINRACGLFDRMPQKNVISWTAMITGYVENKENEEALKVFSKML 322

Query: 199 ERDVVSWNL-----MLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRM 249
               V  N+     +L    +L  L    +  Q I     ++N V    +++ Y+++G +
Sbjct: 323 RDGCVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQENEVVTSALINMYSKSGEL 382

Query: 250 LEARRLFDQMPI--RNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
           + AR++FD   +  R++++WN+MIA Y   G  +EA  ++ +M
Sbjct: 383 IAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYDQM 425



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 114/397 (28%), Positives = 209/397 (52%), Gaps = 31/397 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I  L + GR++EA+ +F +M  K+ +++ +M+   AKNG+V++AR+LF+ MP+RN++
Sbjct: 175 NTMIKALVQRGRIDEAMNLFERMPIKDVISWTAMVDGLAKNGKVDEARRLFDCMPERNII 234

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           SWN+MI GY +N+++ EA +LF  M   D  SW  MIT + R  E+ +A  LFD +P K 
Sbjct: 235 SWNAMITGYTYNNRIDEADQLFQVMPERDFASWNTMITGFIRNREINRACGLFDRMPQK- 293

Query: 139 DTACWNAMVAGYAKIGNYNEA-----KKLLDAMPSKNIVSWNSMLS------GYTKNGEM 187
           +   W AM+ GY +     EA     K L D     N+ ++ S+LS      G  +  ++
Sbjct: 294 NVISWTAMITGYVENKENEEALKVFSKMLRDGCVKPNVGTYVSILSACSDLAGLVEGQQI 353

Query: 188 H-LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK--IPEQNVVSWVTMLSGYA 244
           H L SK     +E +VV+ + +++ Y +  +L +A K F    + +++++SW +M++ YA
Sbjct: 354 HQLISK--SVHQENEVVT-SALINMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYA 410

Query: 245 RNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEM--PERNPV-- 296
            +G   EA  ++DQM         V +  ++ A    G +E+    F E+   E  P+  
Sbjct: 411 HHGHGKEAIEMYDQMRKHGFKPSEVTYLNLLFACSHAGLVEKGMEFFKELVRDESLPLRE 470

Query: 297 -SWTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKI-- 352
             +T ++D   R  +L +    ++    + + +   A++S    +  +  A ++  K+  
Sbjct: 471 EHYTCLVDLCGRAGRLKDVLNFINCDDARLSRSFYGAILSACNVHSEVSIAKEVVKKVLE 530

Query: 353 -GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
            G+ D   + +M   YA  G+ ++A  +  +M  K +
Sbjct: 531 TGSDDAGTYVMMSNIYAASGKREKAAEMRMKMKEKGL 567


>gi|15226879|ref|NP_181048.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099187|sp|O64766.1|PP185_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g35030, mitochondrial; Flags: Precursor
 gi|3033399|gb|AAC12843.1| hypothetical protein [Arabidopsis thaliana]
 gi|209414526|gb|ACI46503.1| At2g35030 [Arabidopsis thaliana]
 gi|330253957|gb|AEC09051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 627

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/554 (37%), Positives = 340/554 (61%), Gaps = 5/554 (0%)

Query: 183 KNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI-PEQNVVSWVTMLS 241
           K G++  A K F+ + ERDVV+W  ++ GY++L D+  A + F ++   +NVV+W  M+S
Sbjct: 58  KVGKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVS 117

Query: 242 GYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTM 301
           GY R+ ++  A  LF +MP RNVV+WN MI  Y Q G+I++A  LF EMPERN VSW +M
Sbjct: 118 GYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSM 177

Query: 302 IDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWN 361
           +   V+  ++DEA  L ++MP +++ + TAM+ G  +N ++DEA ++FD +   +++ WN
Sbjct: 178 VKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNIISWN 237

Query: 362 VMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
            MI GYAQ  R+DEA  LF+ M  +D  +WNTMI G+ + R+M+ A  +F+ M ++ N +
Sbjct: 238 AMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMPEK-NVI 296

Query: 422 SWNALISGFLQNEFHLDALKIFVLMTQEGK-KADHSTLACALSACAHLAALQLGRQIHHL 480
           SW  +I+G+++N+ + +AL +F  M ++G  K +  T    LSAC+ LA L  G+QIH L
Sbjct: 297 SWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQL 356

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGNAT 538
             KS +  +  V ++L+ MY+K G +  A  +F +      D+ISWNS+IA YA +G+  
Sbjct: 357 ISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGK 416

Query: 539 EAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACM 598
           EAI+++ +M   G  P  VT++ +L ACSH GLV+ G++ F+ +    ++    EHY C+
Sbjct: 417 EAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKGMEFFKDLVRDESLPLREEHYTCL 476

Query: 599 IDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKT 658
           +DL  RAGRL +    +     + +   +G +L AC +H  + + +  V+K+ E      
Sbjct: 477 VDLCGRAGRLKDVTNFINCDDARLSRSFYGAILSACNVHNEVSIAKEVVKKVLETGSDDA 536

Query: 659 SCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTA 718
             Y L+SN++A  G+ +E  ++R+ M+  G +KQPGCSW++V  Q H F+ GD    +  
Sbjct: 537 GTYVLMSNIYAANGKREEAAEMRMKMKEKGLKKQPGCSWVKVGKQNHLFVVGDKSHPQFE 596

Query: 719 EICNTLKTLAAQIR 732
            + + L  L  ++R
Sbjct: 597 ALDSILSDLRNKMR 610



 Score =  275 bits (703), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 141/393 (35%), Positives = 238/393 (60%), Gaps = 10/393 (2%)

Query: 92  KVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYA 151
           K+ EAR+LFD +   D+ +W  +IT Y + G++ +ARELFD + ++++   W AMV+GY 
Sbjct: 61  KIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAMVSGYL 120

Query: 152 KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
           +    + A+ L   MP +N+VSWN+M+ GY ++G +  A + F+ M ER++VSWN M+  
Sbjct: 121 RSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVKA 180

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
            V+   +D A   F+++P ++VVSW  M+ G A+NG++ EARRLFD MP RN+++WNAMI
Sbjct: 181 LVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMI 240

Query: 272 AAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
             Y Q  +I+EA +LF  MPER+  SW TMI G++R  ++++A  L D+MP KN+ + T 
Sbjct: 241 TGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTT 300

Query: 332 MISGYVQNKRMDEANQIFDKIGTHDVVCWNV--MIKGYAQCGRMDEAI--NLFRQMVNKD 387
           MI+GYV+NK  +EA  +F K+     V  NV   +   + C  +   +      Q+++K 
Sbjct: 301 MITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKS 360

Query: 388 IVTWNTMIAG-----YAQIRQMDDAVKIFEE-MGKRRNTVSWNALISGFLQNEFHLDALK 441
           +   N ++       Y++  ++  A K+F+  +  +R+ +SWN++I+ +  +    +A++
Sbjct: 361 VHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIE 420

Query: 442 IFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
           ++  M + G K    T    L AC+H   ++ G
Sbjct: 421 MYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKG 453



 Score =  258 bits (659), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 133/394 (33%), Positives = 228/394 (57%), Gaps = 17/394 (4%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           I+S  S+        +I    K G++ +ARKLF+ +P+R++V+W  +I GY+    ++EA
Sbjct: 37  IYSSSSRPRVPQPEWLIGELCKVGKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREA 96

Query: 97  RELFDKM-FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGN 155
           RELFD++  R ++ +W  M++ Y R  +L  A  LF  +P + +   WN M+ GYA+ G 
Sbjct: 97  RELFDRVDSRKNVVTWTAMVSGYLRSKQLSIAEMLFQEMPER-NVVSWNTMIDGYAQSGR 155

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
            ++A +L D MP +NIVSWNSM+    + G +  A   FE M  RDVVSW  M+DG  + 
Sbjct: 156 IDKALELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKN 215

Query: 216 DDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
             +D A + F  +PE+N++SW  M++GYA+N R+ EA +LF  MP R+  +WN MI  ++
Sbjct: 216 GKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFI 275

Query: 276 QRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM-----------PYK 324
           +  ++ +A  LF  MPE+N +SWTTMI GYV   + +EA  +  +M            Y 
Sbjct: 276 RNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYV 335

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ-- 382
           +I +  + ++G V+ +++ +   I   +   + +  + ++  Y++ G +  A  +F    
Sbjct: 336 SILSACSDLAGLVEGQQIHQL--ISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDNGL 393

Query: 383 MVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
           +  +D+++WN+MIA YA      +A++++ +M K
Sbjct: 394 VCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRK 427



 Score =  246 bits (627), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 128/374 (34%), Positives = 222/374 (59%), Gaps = 13/374 (3%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR-NLVSW 80
           I +L K G++ EA K+F  + +++ VT+  +I+ Y K G + +AR+LF+++  R N+V+W
Sbjct: 53  IGELCKVGKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTW 112

Query: 81  NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
            +M++GYL + ++  A  LF +M   ++ SW  MI  Y + G ++KA ELFD +P + + 
Sbjct: 113 TAMVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPER-NI 171

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER 200
             WN+MV    + G  +EA  L + MP +++VSW +M+ G  KNG++  A + F+ M ER
Sbjct: 172 VSWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPER 231

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
           +++SWN M+ GY + + +D A + FQ +PE++  SW TM++G+ RN  M +A  LFD+MP
Sbjct: 232 NIISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMP 291

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-----SWTTMIDGYVRIAKLDEAR 315
            +NV++W  MI  YV+  + EEA  +F +M     V     ++ +++     +A L E +
Sbjct: 292 EKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQ 351

Query: 316 RLLD----QMPYKNIAAQTAMISGYVQNKRMDEANQIFDK--IGTHDVVCWNVMIKGYAQ 369
           ++       +  KN    +A+++ Y ++  +  A ++FD   +   D++ WN MI  YA 
Sbjct: 352 QIHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAH 411

Query: 370 CGRMDEAINLFRQM 383
            G   EAI ++ QM
Sbjct: 412 HGHGKEAIEMYNQM 425



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 99/287 (34%), Positives = 169/287 (58%), Gaps = 12/287 (4%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  I    +SGR+++A+++F +M ++N V++NSM+ A  + GR+++A  LFE+MP+
Sbjct: 140 VVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPR 199

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           R++VSW +M+ G   N KV EAR LFD M   ++ SW  MIT Y +   +++A +LF ++
Sbjct: 200 RDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQVM 259

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P + D A WN M+ G+ +    N+A  L D MP KN++SW +M++GY +N E   A   F
Sbjct: 260 PER-DFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVF 318

Query: 195 EAMEERDVVSWNL-----MLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYAR 245
             M     V  N+     +L    +L  L    +  Q I     ++N +    +L+ Y++
Sbjct: 319 SKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSK 378

Query: 246 NGRMLEARRLFDQMPI--RNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
           +G ++ AR++FD   +  R++++WN+MIA Y   G  +EA  ++ +M
Sbjct: 379 SGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQM 425



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 209/397 (52%), Gaps = 31/397 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +  L + GR++EA+ +F +M +++ V++ +M+   AKNG+V++AR+LF+ MP+RN++
Sbjct: 175 NSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNII 234

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           SWN+MI GY  N+++ EA +LF  M   D  SW  MIT + R  E+ KA  LFD +P K 
Sbjct: 235 SWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGLFDRMPEK- 293

Query: 139 DTACWNAMVAGYAKIGNYNEA-----KKLLDAMPSKNIVSWNSMLS------GYTKNGEM 187
           +   W  M+ GY +     EA     K L D     N+ ++ S+LS      G  +  ++
Sbjct: 294 NVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLVEGQQI 353

Query: 188 H-LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK--IPEQNVVSWVTMLSGYA 244
           H L SK   ++ +++ +  + +L+ Y +  +L +A K F    + +++++SW +M++ YA
Sbjct: 354 HQLISK---SVHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYA 410

Query: 245 RNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEM--PERNPV-- 296
            +G   EA  +++QM       + V +  ++ A    G +E+    F ++   E  P+  
Sbjct: 411 HHGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKGMEFFKDLVRDESLPLRE 470

Query: 297 -SWTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKI-- 352
             +T ++D   R  +L +    ++    + + +   A++S    +  +  A ++  K+  
Sbjct: 471 EHYTCLVDLCGRAGRLKDVTNFINCDDARLSRSFYGAILSACNVHNEVSIAKEVVKKVLE 530

Query: 353 -GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
            G+ D   + +M   YA  G+ +EA  +  +M  K +
Sbjct: 531 TGSDDAGTYVLMSNIYAANGKREEAAEMRMKMKEKGL 567



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 125/269 (46%), Gaps = 49/269 (18%)

Query: 363 MIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
           +I    + G++ EA  LF  +  +D+VTW  +I GY ++  M +A ++F+ +  R+N V+
Sbjct: 52  LIGELCKVGKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVT 111

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482
           W A++SG+L+++     L I  ++ QE  +                              
Sbjct: 112 WTAMVSGYLRSK----QLSIAEMLFQEMPE------------------------------ 137

Query: 483 KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIK 542
                 ++   N++I  YA+ GRI  A  LF +    +++SWNS++      G   EA+ 
Sbjct: 138 -----RNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVKALVQRGRIDEAMN 192

Query: 543 LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLL 602
           LFE M       D V++  ++   +  G VD   +LF+CM E   I      +  MI   
Sbjct: 193 LFERMPRR----DVVSWTAMVDGLAKNGKVDEARRLFDCMPERNIIS-----WNAMITGY 243

Query: 603 SRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           ++  R+DEA ++ + M  +  A  W T++
Sbjct: 244 AQNNRIDEADQLFQVMPERDFAS-WNTMI 271


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/613 (36%), Positives = 352/613 (57%), Gaps = 26/613 (4%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N ++  Y+K G+  + +++ D MP +NI +WNS+++G TK G +  A   F +M ERD  
Sbjct: 59  NRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQC 118

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPEQNVV-------SWVTMLSGYARNGRMLEARRLF 256
           +WN M+ G+ + D  + A  +F  + ++  V       S ++  SG     + ++   L 
Sbjct: 119 TWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLI 178

Query: 257 DQMP-IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVR----IAKL 311
            + P + +V   +A++  Y + G + +A R+F EM +RN VSW ++I  + +    +  L
Sbjct: 179 AKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEAL 238

Query: 312 D------EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIK 365
           D      E+R   D++   ++ +  A +S     + +       DK+  +D++  N  + 
Sbjct: 239 DVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKL-RNDIILSNAFVD 297

Query: 366 GYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
            YA+C R+ EA  +F  M  ++++   +MI+GYA       A  +F +M +R N VSWNA
Sbjct: 298 MYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAER-NVVSWNA 356

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485
           LI+G+ QN  + +AL +F L+ +E     H + A  L ACA LA L LG Q H   +K G
Sbjct: 357 LIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHG 416

Query: 486 YV------NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATE 539
           +       +D+FVGNSLI MY KCG ++   L+F+     D +SWN++I G+A NG   E
Sbjct: 417 FKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNE 476

Query: 540 AIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMI 599
           A++LF EM+  G  PD +T IGVLSAC H G V+ G   F  MT  + + PL +HY CM+
Sbjct: 477 ALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMV 536

Query: 600 DLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTS 659
           DLL RAG L+EA  M++ M ++P++ IWG+LL AC++H+NI LG+   EKL E+EP  + 
Sbjct: 537 DLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSG 596

Query: 660 CYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAE 719
            Y LLSNM+AE G+W++V  VR SM   G  KQPGCSWI+++   H F+  D    R  +
Sbjct: 597 PYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQ 656

Query: 720 ICNTLKTLAAQIR 732
           I + L  L A++R
Sbjct: 657 IHSLLDILIAEMR 669



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 154/562 (27%), Positives = 268/562 (47%), Gaps = 76/562 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F QN+ I    K G +E+  ++F +M Q+N  T+NS+++   K G +++A  LF  MP+
Sbjct: 55  IFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPE 114

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL----FSWALMITCYTRKGELEKAREL 130
           R+  +WNSM++G+  +D+ +EA   F  M +       +S+A +++  +   ++ K  ++
Sbjct: 115 RDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQV 174

Query: 131 FDLL---PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
             L+   P   D    +A+V  Y+K GN N+A+++ D M  +N+VSWNS+++ + +NG  
Sbjct: 175 HSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPA 234

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP---------EQNVVSWVT 238
             A   F+ M E  V    + L   +      SA K  Q++            +++    
Sbjct: 235 VEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNA 294

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW 298
            +  YA+  R+ EAR +FD MPIRNV+A  +MI+ Y      + A  +F +M ERN VSW
Sbjct: 295 FVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSW 354

Query: 299 TTMIDGYVRIAKLDEARRLL----------DQMPYKNIAAQTAMIS----GYVQNKRMDE 344
             +I GY +  + +EA  L               + NI    A ++    G   +  + +
Sbjct: 355 NALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLK 414

Query: 345 ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQM 404
               F      D+   N +I  Y +CG ++E   +FR+M+ +D V+WN MI G+AQ    
Sbjct: 415 HGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQ---- 470

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSA 464
                                       N +  +AL++F  M + G+K DH T+   LSA
Sbjct: 471 ----------------------------NGYGNEALELFREMLESGEKPDHITMIGVLSA 502

Query: 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVG------NSLITMYAKCGRIQNAELLFKDADP 518
           C H   ++ GR  H+    S    D  V         ++ +  + G ++ A+ + ++  P
Sbjct: 503 CGHAGFVEEGR--HYF---SSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEM-P 556

Query: 519 V--DVISWNSLIAGYAINGNAT 538
           +  D + W SL+A   ++ N T
Sbjct: 557 MQPDSVIWGSLLAACKVHRNIT 578



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 174/373 (46%), Gaps = 64/373 (17%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V+  +  +    K G V +A ++F +M  +N V++NS+I+ + +NG   +A  +F+ M
Sbjct: 185 SDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMM 244

Query: 73  PQRNL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGE 123
            +  +    V+  S+I+       +K  +E+  ++      R D+      +  Y +   
Sbjct: 245 LESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSR 304

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK 183
           +++AR +FD +P +   A   +M++GYA   +   A+ +   M  +N+VSWN++++GYT+
Sbjct: 305 IKEARFIFDSMPIRNVIA-ETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQ 363

Query: 184 NG-----------------------------------EMHLASKF----------FEAME 198
           NG                                   E+HL  +           F++ E
Sbjct: 364 NGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGE 423

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
           E D+   N ++D YV+   ++  +  F+K+ E++ VSW  M+ G+A+NG   EA  LF +
Sbjct: 424 EDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFRE 483

Query: 259 M----PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVRIA 309
           M       + +    +++A    G +EE    F  M     V+     +T M+D   R  
Sbjct: 484 MLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAG 543

Query: 310 KLDEARRLLDQMP 322
            L+EA+ ++++MP
Sbjct: 544 FLEEAKSMIEEMP 556



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 111/257 (43%), Gaps = 67/257 (26%)

Query: 454 DHSTLACALSAC--AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN--- 508
           D S  A  L +C  + L+A+ + R +H   IKSG+ N++F+ N LI  Y+KCG +++   
Sbjct: 18  DSSPFAKLLDSCIKSKLSAIYV-RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQ 76

Query: 509 ----------------------------AELLFKDADPVDVISWNSLIAGYAINGNATEA 540
                                       A+ LF+     D  +WNS+++G+A +    EA
Sbjct: 77  VFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEA 136

Query: 541 IKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC------MTEVYAIEPLVEH 594
           +  F  M  EG   +  +F  VLSACS +  ++ G+++         +++VY    LV+ 
Sbjct: 137 LCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDM 196

Query: 595 YA------------------------CMIDLLSRAGRLDEA---FEMVKGMKIKPNAGIW 627
           Y+                         +I    + G   EA   F+M+   +++P+    
Sbjct: 197 YSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTL 256

Query: 628 GTLLGACRMHQNIKLGR 644
            +++ AC     IK+G+
Sbjct: 257 ASVISACASLSAIKVGQ 273



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 86/170 (50%), Gaps = 15/170 (8%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F  N  I    K G VEE   +F +M +++ V++N+MI  +A+NG  N+A +LF +M +
Sbjct: 427 IFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLE 486

Query: 75  R----NLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELE 125
                + ++   +++   H   V+E R  F  M R     P    +  M+    R G LE
Sbjct: 487 SGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLE 546

Query: 126 KARELFDLLPNKEDTACWNAMVAGYA-----KIGNYNEAKKLLDAMPSKN 170
           +A+ + + +P + D+  W +++A         +G Y  A+KLL+  PS +
Sbjct: 547 EAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKY-VAEKLLEVEPSNS 595


>gi|297847764|ref|XP_002891763.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337605|gb|EFH68022.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 828

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/663 (34%), Positives = 372/663 (56%), Gaps = 14/663 (2%)

Query: 81  NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
           NS I+    N  ++EA  +F +M    + SW  MI+ Y   G++ KA ++FD +P +  T
Sbjct: 54  NSQISKLARNGNLQEAEAIFRQMSHRSIVSWNAMISAYAENGKMSKAWQVFDEMPVRATT 113

Query: 141 ACWNAMVAGYAK-IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF--EAM 197
           + +NAM+    K   +  +A +L   +P KN VS+ +M++G+ + G    A   +    +
Sbjct: 114 S-YNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAECLYAETPV 172

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFD 257
           + RD V+ N++L GY+ +   + A + F+ +  + VVS+ +M+ GY + GR+L+AR LFD
Sbjct: 173 KFRDPVASNVLLSGYLRVGKWNEAVRVFEGMAVKEVVSYSSMVDGYCKMGRILDARSLFD 232

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-----SWTTMIDG---YVRIA 309
           +MP RNV+ W AMI  Y + G  E+   LF+ M +   V     +   M      + R  
Sbjct: 233 RMPERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVRVNSNTLAVMFRACRDFFRYR 292

Query: 310 KLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
           +  +   LL +MP + ++    ++IS Y +   M EA  +F  +   D V WN +I G  
Sbjct: 293 EGSQIHGLLSRMPLEFDLFLGNSLISMYSKLGYMGEAKAVFGVMKYKDSVSWNSLITGLV 352

Query: 369 QCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
           Q  ++ EA  LF +M  KD+V+W  MI G++   ++   V++F  M   ++ ++W A+IS
Sbjct: 353 QREQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMM-PEKDDITWTAMIS 411

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
            F+ N ++ +AL  F  M ++    +  T +  LSA A LA L  G QIH   +K    N
Sbjct: 412 AFVSNGYYEEALCWFHKMLRKQVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNMAN 471

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           DL V NSL++MY KCG   +A  +F      +++S+N++I+G++ NG   EA+KLF  + 
Sbjct: 472 DLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGFSYNGFGKEAVKLFSMLE 531

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
             G  P+ VTF+ +LSAC HVG VD G K F+ M   Y IEP  +HYACM+DL  R+G L
Sbjct: 532 STGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKFSYGIEPGPDHYACMVDLFGRSGLL 591

Query: 609 DEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMH 668
           DEA+ ++  M  +P++G+WG+LL A + H  + L  +A +KL ELEP   + Y +LS ++
Sbjct: 592 DEAYNLISTMPCEPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLY 651

Query: 669 AEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLA 728
           +  G+  + +++    +    +K PG SWI +K Q+H FL+GD       EI  TL  + 
Sbjct: 652 SMVGKNSDCDRIMNIKKSKRIKKDPGSSWIILKGQVHNFLAGDESHLNLEEIAFTLDMIG 711

Query: 729 AQI 731
            ++
Sbjct: 712 NEM 714



 Score =  264 bits (674), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 158/510 (30%), Positives = 272/510 (53%), Gaps = 51/510 (10%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F  N +I++L ++G ++EA  IF QMS ++ V++N+MISAYA+NG+++ A ++F++MP 
Sbjct: 50  IFQCNSQISKLARNGNLQEAEAIFRQMSHRSIVSWNAMISAYAENGKMSKAWQVFDEMPV 109

Query: 75  RNLVSWNSMIAGYLHND-KVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDL 133
           R   S+N+MI   + N   + +A ELF  +   +  S+A MIT + R G  ++A  L+  
Sbjct: 110 RATTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAECLYAE 169

Query: 134 LPNK-EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
            P K  D    N +++GY ++G +NEA ++ + M  K +VS++SM+ GY K G +  A  
Sbjct: 170 TPVKFRDPVASNVLLSGYLRVGKWNEAVRVFEGMAVKEVVSYSSMVDGYCKMGRILDARS 229

Query: 193 FFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ-------NVVSWV-------- 237
            F+ M ER+V++W  M+DGY +    +  +  F ++ ++       N ++ +        
Sbjct: 230 LFDRMPERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVRVNSNTLAVMFRACRDFF 289

Query: 238 -------------------------TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
                                    +++S Y++ G M EA+ +F  M  ++ V+WN++I 
Sbjct: 290 RYREGSQIHGLLSRMPLEFDLFLGNSLISMYSKLGYMGEAKAVFGVMKYKDSVSWNSLIT 349

Query: 273 AYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAM 332
             VQR QI EA  LF +MP ++ VSWT MI G+    ++ +   L   MP K+    TAM
Sbjct: 350 GLVQREQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDDITWTAM 409

Query: 333 ISGYVQNKRMDEANQIFDKIGTHDVV----CWNVMIKGYAQCGRMDEAINLFRQMVN--- 385
           IS +V N   +EA   F K+    V      ++ ++   A    + E + +  ++V    
Sbjct: 410 ISAFVSNGYYEEALCWFHKMLRKQVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNM 469

Query: 386 -KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
             D+   N++++ Y +    +DA KIF  + +  N VS+N +ISGF  N F  +A+K+F 
Sbjct: 470 ANDLSVQNSLVSMYCKCGNTNDAYKIFSCISE-PNIVSYNTMISGFSYNGFGKEAVKLFS 528

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLG 474
           ++   GK+ +  T    LSAC H+  + LG
Sbjct: 529 MLESTGKEPNGVTFLALLSACVHVGYVDLG 558



 Score =  149 bits (375), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 152/290 (52%), Gaps = 18/290 (6%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF 109
           NS+IS Y+K G + +A+ +F  M  ++ VSWNS+I G +  +++ EA ELF+KM   D+ 
Sbjct: 314 NSLISMYSKLGYMGEAKAVFGVMKYKDSVSWNSLITGLVQREQISEAYELFEKMPGKDMV 373

Query: 110 SWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA----KKLLDA 165
           SW  MI  ++ KGE+ K  ELF ++P K+D   W AM++ +   G Y EA     K+L  
Sbjct: 374 SWTDMIKGFSGKGEISKCVELFGMMPEKDDIT-WTAMISAFVSNGYYEEALCWFHKMLRK 432

Query: 166 MPSKNIVSWNSMLSGYTKNGE----MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA 221
               N  +++S+LS      +    + +  +  +     D+   N ++  Y +  + + A
Sbjct: 433 QVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNMANDLSVQNSLVSMYCKCGNTNDA 492

Query: 222 WKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQR 277
           +K F  I E N+VS+ TM+SG++ NG   EA +LF  +       N V + A+++A V  
Sbjct: 493 YKIFSCISEPNIVSYNTMISGFSYNGFGKEAVKLFSMLESTGKEPNGVTFLALLSACVHV 552

Query: 278 GQIEEAARLFIEMP-----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
           G ++   + F  M      E  P  +  M+D + R   LDEA  L+  MP
Sbjct: 553 GYVDLGWKYFKSMKFSYGIEPGPDHYACMVDLFGRSGLLDEAYNLISTMP 602



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 167/363 (46%), Gaps = 51/363 (14%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F  N  I+   K G + EA  +F  M  K++V++NS+I+   +  ++++A +LFE+MP 
Sbjct: 310 LFLGNSLISMYSKLGYMGEAKAVFGVMKYKDSVSWNSLITGLVQREQISEAYELFEKMPG 369

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF--- 131
           +++VSW  MI G+    ++ +  ELF  M   D  +W  MI+ +   G  E+A   F   
Sbjct: 370 KDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDDITWTAMISAFVSNGYYEEALCWFHKM 429

Query: 132 ---DLLPNK--------------------------------EDTACWNAMVAGYAKIGNY 156
               + PN                                  D +  N++V+ Y K GN 
Sbjct: 430 LRKQVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNMANDLSVQNSLVSMYCKCGNT 489

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGY 212
           N+A K+   +   NIVS+N+M+SG++ NG    A K F  +E    E + V++  +L   
Sbjct: 490 NDAYKIFSCISEPNIVSYNTMISGFSYNGFGKEAVKLFSMLESTGKEPNGVTFLALLSAC 549

Query: 213 VELDDLDSAWKFFQKIP-----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVA 266
           V +  +D  WK+F+ +      E     +  M+  + R+G + EA  L   MP   +   
Sbjct: 550 VHVGYVDLGWKYFKSMKFSYGIEPGPDHYACMVDLFGRSGLLDEAYNLISTMPCEPHSGV 609

Query: 267 WNAMIAA---YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
           W ++++A   +++    E AA+  IE+   +   +  +   Y  + K  +  R+++    
Sbjct: 610 WGSLLSASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSMVGKNSDCDRIMNIKKS 669

Query: 324 KNI 326
           K I
Sbjct: 670 KRI 672


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 247/748 (33%), Positives = 410/748 (54%), Gaps = 33/748 (4%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIF-SQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           S VF QN  +      G + +A ++  + + + N +T+N M++ YAK G ++DA +LF++
Sbjct: 37  SAVFLQNTLLHAYFSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDR 96

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEK 126
           MP+R++ SWN++++GY    +  +  E F  M R     P+ F++  ++      G  E 
Sbjct: 97  MPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCREL 156

Query: 127 ARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK 183
           A +L  L    +   D     A+V  + + G  + A +L   +    I   NSML+GY K
Sbjct: 157 APQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAK 216

Query: 184 NGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTM 239
              +  A ++FE M ERDVVSWN+M+    +   +  A     ++  + V     ++ + 
Sbjct: 217 LYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSS 276

Query: 240 LSGYARN-----GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
           L+  AR      G+ L A+ +   +P  +    +A+I  Y + G  +EA R+F  + +RN
Sbjct: 277 LTACARLFSLGWGKQLHAK-VIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRN 335

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA----AQTAMISGYVQNKRMD-----EA 345
            VSWT +I G ++     ++  L +QM  + +A    A   +ISG     RMD     + 
Sbjct: 336 SVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFN--RMDLCLGRQL 393

Query: 346 NQIFDKIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQM 404
           + +  K G    +V  N +I  YA+CG +  A  +F  M  +DIV+W +MI  Y+QI  +
Sbjct: 394 HSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNI 453

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF-VLMTQEGKKADHSTLACALS 463
             A + F+ M   RN ++WNA++  ++Q+    D LK++  +++Q+    D  T      
Sbjct: 454 IKAREFFDGM-DTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFR 512

Query: 464 ACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
            CA + A +LG QI    +K+G + ++ V N+ ITMY+KCGRI  A+ LF   +  DV+S
Sbjct: 513 GCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVS 572

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMT 583
           WN++I GY+ +G   +A K F++M+ +G  PD ++++ VLS CSH GLV  G   F+ MT
Sbjct: 573 WNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMT 632

Query: 584 EVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLG 643
            V+ I P +EH++CM+DLL RAG L EA +++  M +KP A +WG LL AC++H N +L 
Sbjct: 633 RVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELA 692

Query: 644 RIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQ 703
            +A + + EL+   +  Y LL+ ++++AG+ D+  +VR  M   G +K PG SW+EV+N+
Sbjct: 693 ELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENK 752

Query: 704 IHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           +H F + D    +   I N L  L  +I
Sbjct: 753 VHVFKADDVSHPQVIAIRNKLDELMEKI 780



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 109/267 (40%), Gaps = 40/267 (14%)

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK-DA 516
           LA AL +C    AL   R +H   +  G  + +F+ N+L+  Y  CG + +A  L + D 
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADI 66

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA----------------------- 553
              +VI+ N ++ GYA  G+ ++A +LF+ M    VA                       
Sbjct: 67  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFV 126

Query: 554 ---------PDPVTFIGVLSACSHVGLVDGGLKLFECMTEV-YAIEPLVEHYACMIDLLS 603
                    P+  TF  V+ +C  +G  +   +L     +  +  +P VE    ++D+  
Sbjct: 127 SMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVE--TALVDMFV 184

Query: 604 RAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYAL 663
           R G +D A  +   ++ +P      ++L        I     A+E   ++  +    + +
Sbjct: 185 RCGYVDFASRLFSQIE-RPTIFCRNSMLAGYAKLYGIDH---AIEYFEDMAERDVVSWNM 240

Query: 664 LSNMHAEAGRWDEVEKVRVSMEGSGAQ 690
           +    +++GR  E   + V M   G +
Sbjct: 241 MIAALSQSGRVREALGLVVEMHRKGVR 267


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 246/748 (32%), Positives = 410/748 (54%), Gaps = 33/748 (4%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIF-SQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           S VF QN  +      G + +A ++  + + + N +T+N M++ YAK G ++DA +LF++
Sbjct: 37  SAVFLQNTLLHAYLSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDR 96

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEK 126
           MP+R++ SWN++++GY    +  +  E F  M R     P+ F++  ++      G  E 
Sbjct: 97  MPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCREL 156

Query: 127 ARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK 183
           A +L  L    +   D     A+V  + + G  + A +L   +    I   NSML+GY K
Sbjct: 157 APQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAK 216

Query: 184 NGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTM 239
              +  A ++FE M ERDVVSWN+M+    +   +  A     ++  + V     ++ + 
Sbjct: 217 LYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSS 276

Query: 240 LSGYARN-----GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
           L+  AR      G+ L A+ +   +P  +    +A+I  Y + G  +EA R+F  + +RN
Sbjct: 277 LTACARLFSLGWGKQLHAK-VIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRN 335

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA----AQTAMISGYVQNKRMD-----EA 345
            VSWT +I G ++     ++  L +QM  + +A    A   +ISG     RMD     + 
Sbjct: 336 SVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFN--RMDLCLGRQL 393

Query: 346 NQIFDKIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQM 404
           + +  K G    +V  N +I  YA+CG +  A  +F  M  +DIV+W +MI  Y+QI  +
Sbjct: 394 HSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNI 453

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF-VLMTQEGKKADHSTLACALS 463
             A + F+ M  R N ++WNA++  ++Q+    D LK++  +++Q+    D  T      
Sbjct: 454 IKAREFFDGMATR-NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFR 512

Query: 464 ACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
            CA + A +LG QI    +K+G + ++ V N+ ITMY+KCGRI  A+ LF   +  DV+S
Sbjct: 513 GCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVS 572

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMT 583
           WN++I GY+ +G   +A K F++M+ +G  PD ++++ VLS CSH GLV  G   F+ MT
Sbjct: 573 WNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMT 632

Query: 584 EVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLG 643
            V+ I P +EH++CM+DLL RAG L EA +++  M +KP A +WG LL AC++H N +L 
Sbjct: 633 RVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELA 692

Query: 644 RIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQ 703
            +A + + EL+   +  Y LL+ ++++AG+ D+  +VR  M   G +K PG SW+EV+N+
Sbjct: 693 ELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENK 752

Query: 704 IHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           +H F + D    +   I N +  L  +I
Sbjct: 753 VHVFKADDVSHPQVIAIRNKMDELMEKI 780



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/267 (21%), Positives = 109/267 (40%), Gaps = 40/267 (14%)

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK-DA 516
           LA AL +C    AL   R +H   +  G  + +F+ N+L+  Y  CG + +A  L + D 
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADI 66

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA----------------------- 553
              +VI+ N ++ GYA  G+ ++A +LF+ M    VA                       
Sbjct: 67  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFV 126

Query: 554 ---------PDPVTFIGVLSACSHVGLVDGGLKLFECMTEV-YAIEPLVEHYACMIDLLS 603
                    P+  TF  V+ +C  +G  +   +L     +  +  +P VE    ++D+  
Sbjct: 127 SMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVE--TALVDMFV 184

Query: 604 RAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYAL 663
           R G +D A  +   ++ +P      ++L        I     A+E   ++  +    + +
Sbjct: 185 RCGYVDFASRLFSQIE-RPTIFCRNSMLAGYAKLYGIDH---AIEYFEDMAERDVVSWNM 240

Query: 664 LSNMHAEAGRWDEVEKVRVSMEGSGAQ 690
           +    +++GR  E   + V M   G +
Sbjct: 241 MIAALSQSGRVREALGLVVEMHRKGVR 267


>gi|334183275|ref|NP_175765.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806499|sp|Q9C8L6.2|PPR80_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g53600, mitochondrial; Flags: Precursor
 gi|332194847|gb|AEE32968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 717

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 233/663 (35%), Positives = 375/663 (56%), Gaps = 14/663 (2%)

Query: 81  NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
           NS I+ +  N  ++EA  +F +M    + SW  MI+ Y   G++ KA ++FD +P +  T
Sbjct: 54  NSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTT 113

Query: 141 ACWNAMVAGYAK-IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF--EAM 197
           + +NAM+    K   +  +A +L   +P KN VS+ +M++G+ + G    A   +    +
Sbjct: 114 S-YNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAETPV 172

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFD 257
           + RD V+ N++L GY+     + A + FQ +  + VVS  +M+ GY + GR+++AR LFD
Sbjct: 173 KFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFD 232

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-----SWTTMIDG---YVRIA 309
           +M  RNV+ W AMI  Y + G  E+   LF+ M +   V     +   M      +VR  
Sbjct: 233 RMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYR 292

Query: 310 KLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
           +  +   L+ +MP + ++    +++S Y +   M EA  +F  +   D V WN +I G  
Sbjct: 293 EGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLV 352

Query: 369 QCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
           Q  ++ EA  LF +M  KD+V+W  MI G++   ++   V++F  M ++ N ++W A+IS
Sbjct: 353 QRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDN-ITWTAMIS 411

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
            F+ N ++ +AL  F  M Q+    +  T +  LSA A LA L  G QIH   +K   VN
Sbjct: 412 AFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVN 471

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           DL V NSL++MY KCG   +A  +F      +++S+N++I+GY+ NG   +A+KLF  + 
Sbjct: 472 DLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLE 531

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
             G  P+ VTF+ +LSAC HVG VD G K F+ M   Y IEP  +HYACM+DLL R+G L
Sbjct: 532 SSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLL 591

Query: 609 DEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMH 668
           D+A  ++  M  KP++G+WG+LL A + H  + L  +A +KL ELEP   + Y +LS ++
Sbjct: 592 DDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLY 651

Query: 669 AEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLA 728
           +  G+  + +++    +    +K PG SWI +K ++H FL+GD  Q    EI  TLK + 
Sbjct: 652 SIIGKNRDCDRIMNIKKSKRIKKDPGSSWIILKGEVHNFLAGDESQLNLEEIGFTLKMIR 711

Query: 729 AQI 731
            ++
Sbjct: 712 KEM 714



 Score =  254 bits (650), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 161/522 (30%), Positives = 276/522 (52%), Gaps = 52/522 (9%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F  N +I++  ++G ++EA  IF QMS ++ V++ +MISAYA+NG+++ A ++F++MP 
Sbjct: 50  IFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPV 109

Query: 75  RNLVSWNSMIAGYLHND-KVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDL 133
           R   S+N+MI   + N   + +A ELF  +   +  S+A MIT + R G  ++A  L+  
Sbjct: 110 RVTTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAE 169

Query: 134 LPNK-EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
            P K  D+   N +++GY + G +NEA ++   M  K +VS +SM+ GY K G +  A  
Sbjct: 170 TPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARS 229

Query: 193 FFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ--------------------- 231
            F+ M ER+V++W  M+DGY +    +  +  F ++ ++                     
Sbjct: 230 LFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFV 289

Query: 232 ---------NVVSWV----------TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
                     +VS +          +++S Y++ G M EA+ +F  M  ++ V+WN++I 
Sbjct: 290 RYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLIT 349

Query: 273 AYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAM 332
             VQR QI EA  LF +MP ++ VSWT MI G+    ++ +   L   MP K+    TAM
Sbjct: 350 GLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNITWTAM 409

Query: 333 ISGYVQNKRMDEANQIFDKIGTHDVV----CWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
           IS +V N   +EA   F K+   +V      ++ ++   A    + E + +  ++V  +I
Sbjct: 410 ISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNI 469

Query: 389 V----TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
           V      N++++ Y +    +DA KIF  + +  N VS+N +ISG+  N F   ALK+F 
Sbjct: 470 VNDLSVQNSLVSMYCKCGNTNDAYKIFSCISE-PNIVSYNTMISGYSYNGFGKKALKLFS 528

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
           ++   GK+ +  T    LSAC H+  + LG + +  ++KS Y
Sbjct: 529 MLESSGKEPNGVTFLALLSACVHVGYVDLGWK-YFKSMKSSY 569



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 150/292 (51%), Gaps = 18/292 (6%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF 109
           NS++S Y+K G + +A+ +F  M  ++ VSWNS+I G +   ++ EA ELF+KM   D+ 
Sbjct: 314 NSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDMV 373

Query: 110 SWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA----KKLLDA 165
           SW  MI  ++ KGE+ K  ELF ++P K D   W AM++ +   G Y EA     K+L  
Sbjct: 374 SWTDMIKGFSGKGEISKCVELFGMMPEK-DNITWTAMISAFVSNGYYEEALCWFHKMLQK 432

Query: 166 MPSKNIVSWNSMLSGYTKNGE----MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA 221
               N  +++S+LS      +    + +  +  +     D+   N ++  Y +  + + A
Sbjct: 433 EVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDA 492

Query: 222 WKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQR 277
           +K F  I E N+VS+ TM+SGY+ NG   +A +LF  +       N V + A+++A V  
Sbjct: 493 YKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHV 552

Query: 278 GQIEEAARLFIEMP-----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
           G ++   + F  M      E  P  +  M+D   R   LD+A  L+  MP K
Sbjct: 553 GYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCK 604



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 180/395 (45%), Gaps = 56/395 (14%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F  N  ++   K G + EA  +F  M  K++V++NS+I+   +  ++++A +LFE+MP 
Sbjct: 310 LFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPG 369

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           +++VSW  MI G+    ++ +  ELF  M   D  +W  MI+ +   G  E+A   F  +
Sbjct: 370 KDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKM 429

Query: 135 PNKE--------------------------------------DTACWNAMVAGYAKIGNY 156
             KE                                      D +  N++V+ Y K GN 
Sbjct: 430 LQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNT 489

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGY 212
           N+A K+   +   NIVS+N+M+SGY+ NG    A K F  +E    E + V++  +L   
Sbjct: 490 NDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSAC 549

Query: 213 VELDDLDSAWKFFQKIP-----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVA 266
           V +  +D  WK+F+ +      E     +  M+    R+G + +A  L   MP + +   
Sbjct: 550 VHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCKPHSGV 609

Query: 267 WNAMIAA---YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
           W ++++A   +++    E AA+  IE+   +   +  +   Y  I K  +  R+++    
Sbjct: 610 WGSLLSASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSIIGKNRDCDRIMNIKKS 669

Query: 324 KNIAAQTA----MISGYVQNKRMDEANQI-FDKIG 353
           K I         ++ G V N    + +Q+  ++IG
Sbjct: 670 KRIKKDPGSSWIILKGEVHNFLAGDESQLNLEEIG 704


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/707 (33%), Positives = 391/707 (55%), Gaps = 41/707 (5%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF 109
           N +++ Y+  G ++DA ++F  +   N+ SWN+MI+G+  + +++EA +LF+KM   D  
Sbjct: 43  NHLLNMYSNCGLISDAYRVFGGIMFPNVYSWNTMISGFADSGQMREAEKLFEKMPERDSV 102

Query: 110 SWALMITCYTRKGE-------------------LEKARELFDLLPNKEDTACWNAMVAGY 150
           SW  M++ Y   GE                   L    E FD      DT    +++  Y
Sbjct: 103 SWNSMMSGYFHNGELEATIKASGSLGYLKLALQLHGFAEKFDF---GIDTCVETSVLDMY 159

Query: 151 AKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLD 210
            K G  + A+K+    P+ ++  WNSM+ GY+K G +  A + F  M ERD VSWN M+ 
Sbjct: 160 IKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMIS 219

Query: 211 GYVE----LDDLDSAWKFFQKIPEQNVVSWVTMLSGYARN-----GRMLEARRLFDQMPI 261
              +     + L++  + + +    N +++ ++LS          G  L AR +    P 
Sbjct: 220 ILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHAR-IVRMEPC 278

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
            +V A   +I  Y + G++E A ++F  + E N VSWT++I G  +    +EA  L +QM
Sbjct: 279 LDVYAGCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQM 338

Query: 322 PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV--------CWNVMIKGYAQCGRM 373
               +A+    ++  +      +   I +++  H +           N ++  YA+CG +
Sbjct: 339 REVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDV 398

Query: 374 DEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433
            +A + F  M  +DI++W  MI  ++Q   ++ A + F++M   RN +SWN++++ ++Q 
Sbjct: 399 WKANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYFDKM-PERNVISWNSMLATYMQR 457

Query: 434 EFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG 493
            +  + LK+++ M +EG K D  T + ++SACA LA L LG QI   A K G+ +++ V 
Sbjct: 458 GYWEEGLKVYIQMLREGVKTDWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVA 517

Query: 494 NSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA 553
           NS++TMY++CG+I+ A+ +F      +++SWN+++AGYA NG   + I++FE+M+  G  
Sbjct: 518 NSVVTMYSRCGQIEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNV 577

Query: 554 PDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFE 613
           PD ++++ VLS CSH G V  G   F  MT+ + I P+ EH+ CM+DLL RAG+L++A  
Sbjct: 578 PDQISYVSVLSGCSHSGFVSEGQYYFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKN 637

Query: 614 MVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGR 673
           ++  M  KPNA IWG LL ACR+H N KL  +AV+ L EL+ +    Y LL+N+++E+G+
Sbjct: 638 LINQMPFKPNAAIWGALLAACRIHGNTKLAELAVKNLLELDAEGPGSYCLLANIYSESGK 697

Query: 674 WDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
              V  VR  M   G +K PGCSWIEV N++H F   D    +  ++
Sbjct: 698 IQGVTNVRKLMRDKGVRKNPGCSWIEVDNRVHVFTVDDTNHPQIKDV 744



 Score =  211 bits (538), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 155/588 (26%), Positives = 269/588 (45%), Gaps = 143/588 (24%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
           + A L  +G K S +F QN  +      G + +A ++F  +   N  ++N+MIS +A +G
Sbjct: 26  LHAQLIFMGLKSS-IFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYSWNTMISGFADSG 84

Query: 61  RVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA-------------------RELFD 101
           ++ +A KLFE+MP+R+ VSWNSM++GY HN +++                      E FD
Sbjct: 85  QMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLGYLKLALQLHGFAEKFD 144

Query: 102 KMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKK 161
             F  D      ++  Y + G ++ A+++F   PN     CWN+M+ GY+K G+  +A +
Sbjct: 145 --FGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNP-SLFCWNSMIYGYSKYGSVKKALE 201

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNG----------EM------------------------ 187
           L   MP ++ VSWN+M+S  +++G          EM                        
Sbjct: 202 LFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYD 261

Query: 188 -----HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG 242
                HL ++        DV +   ++D Y +   L+SA + F  + E N VSW +++ G
Sbjct: 262 LEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGG 321

Query: 243 YARNGRMLEARRLFDQM---PI------------------------------------RN 263
            A+ G   EA  LF+QM   P+                                     +
Sbjct: 322 VAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDSS 381

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
           V   NA++  Y + G + +A   F  MP R+ +SWT MI  + +   +++AR   D+MP 
Sbjct: 382 VPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPE 441

Query: 324 KNIAAQTAMISGYVQNKRMDE-----------------------------------ANQI 348
           +N+ +  +M++ Y+Q    +E                                    NQI
Sbjct: 442 RNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSISACADLAVLILGNQI 501

Query: 349 F---DKIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQM 404
               +K+G + +V   N ++  Y++CG+++EA  +F  +V K++V+WN M+AGYAQ  Q 
Sbjct: 502 LAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQG 561

Query: 405 DDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
              ++IFE+M   G   + +S+ +++SG   + F  +    F+ MT++
Sbjct: 562 RKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGFVSEGQYYFLSMTKD 609



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 4/117 (3%)

Query: 461 ALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVD 520
           ++  CA L ++ + R++H   I  G  + +F+ N L+ MY+ CG I +A  +F      +
Sbjct: 10  SMKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPN 69

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLK 577
           V SWN++I+G+A +G   EA KLFE+M       D V++  ++S   H G ++  +K
Sbjct: 70  VYSWNTMISGFADSGQMREAEKLFEKMPER----DSVSWNSMMSGYFHNGELEATIK 122


>gi|147861249|emb|CAN79322.1| hypothetical protein VITISV_018985 [Vitis vinifera]
          Length = 932

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/549 (38%), Positives = 332/549 (60%), Gaps = 7/549 (1%)

Query: 166 MPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFF 225
           MP  + VS+ +M++ Y KN E+  A K F+ M +R +V+ + M+DGY +   +DSA K F
Sbjct: 1   MPHHDNVSYTAMITAYLKNNELRKAEKLFQTMPDRTIVAESAMIDGYAKAGLMDSAQKVF 60

Query: 226 QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAAR 285
             + + NV SW +++SGY R+G++ +A +LFDQMP +NVV+W  M+  Y + G I++A  
Sbjct: 61  DAMIDTNVFSWTSLISGYFRDGQVAKACQLFDQMPAKNVVSWTTMVLGYARNGLIDQARS 120

Query: 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
           +F +MPE+N +SWT M+  YV   + DEA +L  +MP +N+ +   MISG +  KR++EA
Sbjct: 121 VFNQMPEKNTISWTAMMKSYVDNGRTDEALKLFHEMPQRNLYSWNTMISGCLDGKRVNEA 180

Query: 346 NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMD 405
            ++F  +   + V W +M+ G A+ G    A   F QM NKDI  WN MI  Y     + 
Sbjct: 181 FKLFHLMPLRNAVSWTIMVSGLARNGFTKLAREYFDQMPNKDIAAWNAMITAYVDECLIV 240

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
           +A ++F  M + RN V+WNA+I G+ ++    +A+K  +LM +   + + +T+   L++C
Sbjct: 241 EASELFNLMTE-RNIVTWNAMIDGYARHRPDGEAMKHLILMLRSCIRPNETTMTIILTSC 299

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
             +  L    Q H LAI  G   +  + N+LITMY++ G I ++ + F+     DV+SW 
Sbjct: 300 WGMLELM---QAHALAIVVGCECETSLSNALITMYSRIGDISSSRIAFESLKAKDVVSWT 356

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
           +++  +  +G+   A+ +F  M+  G  PD +TF+GVLSACSH GLV  G KLF+ M+  
Sbjct: 357 AMLLAFTYHGHGDHALHVFGHMLKSGTKPDEITFVGVLSACSHAGLVKKGQKLFDSMSRA 416

Query: 586 YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPNAGIWGTLLGACRMHQNIKLGR 644
           Y +EP  EHY+C++D+L RAG++ EA ++V  M + + +  + G LLGACR+H N+++  
Sbjct: 417 YGLEPRAEHYSCLVDILGRAGQVHEAMDVVWKMPECERDGAVLGALLGACRLHGNVEMAD 476

Query: 645 IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQI 704
              +KL EL+P  +  Y LL+N+ A  G WDE  +VR  M+    +K PG S IE   Q 
Sbjct: 477 YIGQKLIELQPNSSGGYVLLANVFAARGNWDEFAEVRKKMKDRNVRKVPGFSQIEF--QQ 534

Query: 705 HTFLSGDPK 713
              L+G PK
Sbjct: 535 GQILTGQPK 543



 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 147/442 (33%), Positives = 225/442 (50%), Gaps = 38/442 (8%)

Query: 41  MSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF 100
           M   + V+Y +MI+AY KN  +  A KLF+ MP R +V+ ++MI GY     +  A+++F
Sbjct: 1   MPHHDNVSYTAMITAYLKNNELRKAEKLFQTMPDRTIVAESAMIDGYAKAGLMDSAQKVF 60

Query: 101 DKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
           D M   ++FSW  +I+ Y R G++ KA +LFD +P K +   W  MV GYA+ G  ++A+
Sbjct: 61  DAMIDTNVFSWTSLISGYFRDGQVAKACQLFDQMPAK-NVVSWTTMVLGYARNGLIDQAR 119

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
            + + MP KN +SW +M+  Y  NG    A K F  M +R++ SWN M+ G ++   ++ 
Sbjct: 120 SVFNQMPEKNTISWTAMMKSYVDNGRTDEALKLFHEMPQRNLYSWNTMISGCLDGKRVNE 179

Query: 221 AWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQI 280
           A+K F  +P +N VSW  M+SG ARNG    AR  FDQMP +++ AWNAMI AYV    I
Sbjct: 180 AFKLFHLMPLRNAVSWTIMVSGLARNGFTKLAREYFDQMPNKDIAAWNAMITAYVDECLI 239

Query: 281 EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR----LLDQMPYKNIAAQTAMISGY 336
            EA+ LF  M ERN V+W  MIDGY R     EA +    +L      N    T +++  
Sbjct: 240 VEASELFNLMTERNIVTWNAMIDGYARHRPDGEAMKHLILMLRSCIRPNETTMTIILTSC 299

Query: 337 VQNKRMDEANQIFDKIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMI 395
                + +A+ +   +G   +    N +I  Y++ G +  +   F  +  KD+V+W  M+
Sbjct: 300 WGMLELMQAHALAIVVGCECETSLSNALITMYSRIGDISSSRIAFESLKAKDVVSWTAML 359

Query: 396 AGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADH 455
             +      D A+ +F  M K                                 G K D 
Sbjct: 360 LAFTYHGHGDHALHVFGHMLK--------------------------------SGTKPDE 387

Query: 456 STLACALSACAHLAALQLGRQI 477
            T    LSAC+H   ++ G+++
Sbjct: 388 ITFVGVLSACSHAGLVKKGQKL 409



 Score =  203 bits (517), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 119/404 (29%), Positives = 208/404 (51%), Gaps = 10/404 (2%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           IT   K+  + +A K+F  M  +  V  ++MI  YAK G ++ A+K+F+ M   N+ SW 
Sbjct: 13  ITAYLKNNELRKAEKLFQTMPDRTIVAESAMIDGYAKAGLMDSAQKVFDAMIDTNVFSWT 72

Query: 82  SMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTA 141
           S+I+GY  + +V +A +LFD+M   ++ SW  M+  Y R G +++AR +F+ +P K +T 
Sbjct: 73  SLISGYFRDGQVAKACQLFDQMPAKNVVSWTTMVLGYARNGLIDQARSVFNQMPEK-NTI 131

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
            W AM+  Y   G  +EA KL   MP +N+ SWN+M+SG      ++ A K F  M  R+
Sbjct: 132 SWTAMMKSYVDNGRTDEALKLFHEMPQRNLYSWNTMISGCLDGKRVNEAFKLFHLMPLRN 191

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
            VSW +M+ G         A ++F ++P +++ +W  M++ Y     ++EA  LF+ M  
Sbjct: 192 AVSWTIMVSGLARNGFTKLAREYFDQMPNKDIAAWNAMITAYVDECLIVEASELFNLMTE 251

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRL 317
           RN+V WNAMI  Y +     EA +  I M       N  + T ++     + +L +A  L
Sbjct: 252 RNIVTWNAMIDGYARHRPDGEAMKHLILMLRSCIRPNETTMTIILTSCWGMLELMQAHAL 311

Query: 318 LDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
              +  +   +   A+I+ Y +   +  +   F+ +   DVV W  M+  +   G  D A
Sbjct: 312 AIVVGCECETSLSNALITMYSRIGDISSSRIAFESLKAKDVVSWTAMLLAFTYHGHGDHA 371

Query: 377 INLFRQMV----NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
           +++F  M+      D +T+  +++  +    +    K+F+ M +
Sbjct: 372 LHVFGHMLKSGTKPDEITFVGVLSACSHAGLVKKGQKLFDSMSR 415



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/379 (29%), Positives = 194/379 (51%), Gaps = 12/379 (3%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +  ++  I    K+G ++ A K+F  M   N  ++ S+IS Y ++G+V  A +LF+QMP 
Sbjct: 37  IVAESAMIDGYAKAGLMDSAQKVFDAMIDTNVFSWTSLISGYFRDGQVAKACQLFDQMPA 96

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           +N+VSW +M+ GY  N  + +AR +F++M   +  SW  M+  Y   G  ++A +LF  +
Sbjct: 97  KNVVSWTTMVLGYARNGLIDQARSVFNQMPEKNTISWTAMMKSYVDNGRTDEALKLFHEM 156

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P + +   WN M++G       NEA KL   MP +N VSW  M+SG  +NG   LA ++F
Sbjct: 157 PQR-NLYSWNTMISGCLDGKRVNEAFKLFHLMPLRNAVSWTIMVSGLARNGFTKLAREYF 215

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
           + M  +D+ +WN M+  YV+   +  A + F  + E+N+V+W  M+ GYAR+    EA +
Sbjct: 216 DQMPNKDIAAWNAMITAYVDECLIVEASELFNLMTERNIVTWNAMIDGYARHRPDGEAMK 275

Query: 255 LFDQMPIRNVVAWNAMIAAYVQR---GQIE--EAARLFIEMPERNPVSWT-TMIDGYVRI 308
               M +R+ +  N      +     G +E  +A  L I +      S +  +I  Y RI
Sbjct: 276 HLILM-LRSCIRPNETTMTIILTSCWGMLELMQAHALAIVVGCECETSLSNALITMYSRI 334

Query: 309 AKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD---KIGTH-DVVCWNVMI 364
             +  +R   + +  K++ + TAM+  +  +   D A  +F    K GT  D + +  ++
Sbjct: 335 GDISSSRIAFESLKAKDVVSWTAMLLAFTYHGHGDHALHVFGHMLKSGTKPDEITFVGVL 394

Query: 365 KGYAQCGRMDEAINLFRQM 383
              +  G + +   LF  M
Sbjct: 395 SACSHAGLVKKGQKLFDSM 413


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 204/494 (41%), Positives = 303/494 (61%), Gaps = 20/494 (4%)

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWT 299
           ++GY +N R  EAR+LFD+MP  N ++WN +++ YVQ G I EA ++F +MPERN VSWT
Sbjct: 1   MAGYFQNKRPREARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWT 60

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
            MI GYV+   ++EA  L  +MP +N+ + T M+ G +++ R+DEA Q+FD +   DVV 
Sbjct: 61  AMIRGYVQEGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVA 120

Query: 360 WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRN 419
              MI G    GR+ EA  +F +M  +++V W +MI+G     + DD             
Sbjct: 121 STNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISG-----EKDDG------------ 163

Query: 420 TVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHH 479
             +W+ +I  + +  F L+AL +F LM +EG +    ++   LS C  LA+L  GRQ+H 
Sbjct: 164 --TWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHS 221

Query: 480 LAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATE 539
             ++S +  D++V + LITMY KCG +  A+ +F      D++ WNS+IAGYA +G   +
Sbjct: 222 QLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEK 281

Query: 540 AIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMI 599
           A+++F +M    +APD +TFIGVLSACS+ G V  GL++FE M   Y ++P  EHYACM+
Sbjct: 282 ALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMV 341

Query: 600 DLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTS 659
           DLL RAG+L+EA  +++ M ++ +A +WG LLGACR H+N+ L  IA +KL +LEP    
Sbjct: 342 DLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPNNAG 401

Query: 660 CYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAE 719
            Y LLSN+++   RW +V ++R +M     +K PGCSWIEV  ++H F  G        E
Sbjct: 402 PYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGCSWIEVDKKVHIFSGGGSTSHPEHE 461

Query: 720 -ICNTLKTLAAQIR 732
            I   L  L A +R
Sbjct: 462 MILKKLGKLGALLR 475



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 131/415 (31%), Positives = 202/415 (48%), Gaps = 59/415 (14%)

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN 206
           +AGY +     EA+KL D MP  N +SWN ++SGY +NG +  A K F+ M ER+VVSW 
Sbjct: 1   MAGYFQNKRPREARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWT 60

Query: 207 LMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA 266
            M+ GYV+   ++ A   F ++PE+NVVSW  ML G   +GR+ EAR+LFD MP+++VVA
Sbjct: 61  AMIRGYVQEGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVA 120

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDG-------------YVRIAKLDE 313
              MI      G++ EA  +F EMP+RN V+WT+MI G             Y R     E
Sbjct: 121 STNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELE 180

Query: 314 ARRLLDQMPYKNI----AAQTAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIK 365
           A  L   M  + +     +  +++S       +D   Q+  ++       D+   +V+I 
Sbjct: 181 ALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLIT 240

Query: 366 GYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
            Y +CG +  A  +F +  +KDIV WN++IAGYA                          
Sbjct: 241 MYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYA-------------------------- 274

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485
                 Q+ F   AL++F  M       D  T    LSAC++   ++ G +I   ++KS 
Sbjct: 275 ------QHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFE-SMKSK 327

Query: 486 YVNDLFVGN--SLITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGN 536
           Y  D    +   ++ +  + G++  A  L ++  PV  D I W +L+     + N
Sbjct: 328 YQVDPKTEHYACMVDLLGRAGKLNEAMNLIENM-PVEADAIVWGALLGACRTHKN 381



 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/323 (32%), Positives = 179/323 (55%), Gaps = 28/323 (8%)

Query: 118 YTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSM 177
           Y +     +AR+LFD +P + +T  WN +V+GY + G  +EA+K+ D MP +N+VSW +M
Sbjct: 4   YFQNKRPREARKLFDKMP-ETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAM 62

Query: 178 LSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV 237
           + GY + G +  A   F  M ER+VVSW +ML G +E   +D A + F  +P ++VV+  
Sbjct: 63  IRGYVQEGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVAST 122

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA-------------YVQRGQIEEAA 284
            M+ G    GR++EAR +FD+MP RNVVAW +MI+              Y ++G   EA 
Sbjct: 123 NMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEAL 182

Query: 285 RLFIEMPERNPV-----SWTTMIDGYVRIAKLDEARRLLDQMPYK----NIAAQTAMISG 335
            LF  M +R  V     S  +++     +A LD  R++  Q+       +I   + +I+ 
Sbjct: 183 ALFSLM-QREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITM 241

Query: 336 YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI----VTW 391
           Y++   +  A ++FD+  + D+V WN +I GYAQ G  ++A+ +F  M +  I    +T+
Sbjct: 242 YIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITF 301

Query: 392 NTMIAGYAQIRQMDDAVKIFEEM 414
             +++  +   ++ + ++IFE M
Sbjct: 302 IGVLSACSYTGKVKEGLEIFESM 324



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/404 (26%), Positives = 199/404 (49%), Gaps = 53/404 (13%)

Query: 30  RVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLH 89
           R  EA K+F +M + NT+++N ++S Y +NG +++ARK+F++MP+RN+VSW +MI GY+ 
Sbjct: 9   RPREARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQ 68

Query: 90  NDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAG 149
              ++EA  LF +M   ++ SW +M+      G +++AR+LFD++P K+  A  N M+ G
Sbjct: 69  EGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVASTN-MIDG 127

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE--AMEERDVVSWNL 207
               G   EA+++ D MP +N+V+W SM+SG   +G      K +E    E   +  ++L
Sbjct: 128 LCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSL 187

Query: 208 M---------------LDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARNGR 248
           M               L     L  LD   +   ++       ++     +++ Y + G 
Sbjct: 188 MQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGD 247

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDG 304
           ++ A+R+FD+   +++V WN++IA Y Q G  E+A  +F +M       + +++  ++  
Sbjct: 248 LVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSA 307

Query: 305 YVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMI 364
                K+ E   + + M  K           Y  + + +    + D +G           
Sbjct: 308 CSYTGKVKEGLEIFESMKSK-----------YQVDPKTEHYACMVDLLG----------- 345

Query: 365 KGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAGYAQIRQMDDA 407
               + G+++EA+NL   M V  D + W  ++      + +D A
Sbjct: 346 ----RAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLA 385



 Score =  142 bits (359), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 172/333 (51%), Gaps = 29/333 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  ++   ++G + EA K+F +M ++N V++ +MI  Y + G + +A  LF +MP+RN+V
Sbjct: 29  NGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRMPERNVV 88

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK- 137
           SW  M+ G + + +V EAR+LFD M   D+ +   MI     +G L +ARE+FD +P + 
Sbjct: 89  SWTVMLGGLIEDGRVDEARQLFDMMPVKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRN 148

Query: 138 -----------EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI-VSWNSMLSGYTKNG 185
                      +D   W+ M+  Y + G   EA  L   M  + +  S+ S++S  +  G
Sbjct: 149 VVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCG 208

Query: 186 EM-------HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
            +        + S+   +  + D+   ++++  Y++  DL +A + F +   +++V W +
Sbjct: 209 SLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNS 268

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
           +++GYA++G   +A  +F  M   ++    + +  +++A    G+++E   +F  M  + 
Sbjct: 269 IIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKY 328

Query: 295 PVS-----WTTMIDGYVRIAKLDEARRLLDQMP 322
            V      +  M+D   R  KL+EA  L++ MP
Sbjct: 329 QVDPKTEHYACMVDLLGRAGKLNEAMNLIENMP 361



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 135/327 (41%), Gaps = 42/327 (12%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           I  L   GR+ EA +IF +M Q+N V + SMIS    +G                  +W+
Sbjct: 125 IDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDG------------------TWS 166

Query: 82  SMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
           +MI  Y       EA  LF  M     RP   S   +++       L+  R++   L   
Sbjct: 167 TMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRS 226

Query: 138 E---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           +   D    + ++  Y K G+   AK++ D   SK+IV WNS+++GY ++G    A + F
Sbjct: 227 QFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVF 286

Query: 195 EAMEERDVVSWNLMLDGYVE-----------LDDLDSAWKFFQKIPEQNVVSWVTMLSGY 243
             M    +    +   G +            L+  +S    +Q  P+     +  M+   
Sbjct: 287 HDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTE--HYACMVDLL 344

Query: 244 ARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWT 299
            R G++ EA  L + MP+  + + W A++ A      +   E AA+  +++   N   + 
Sbjct: 345 GRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPNNAGPYI 404

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNI 326
            + + Y   ++  +   L   M  KN+
Sbjct: 405 LLSNLYSSQSRWKDVVELRKTMRAKNL 431


>gi|8920616|gb|AAF81338.1|AC007767_18 Contains similarity to a hypothetical protein F19I3.26 gi|7485810
           from Arabidopsis thaliana BAC F19I3 gb|AC004238. It
           contains a PPR repeat domain PF|01535. ESTs gb|AV539170,
           gb|AV551571, gb|AA597781, gb|AV544524, gb|AV531577 and
           gb|AV533492 come from this gene [Arabidopsis thaliana]
          Length = 864

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/742 (34%), Positives = 403/742 (54%), Gaps = 65/742 (8%)

Query: 8   IGNKGSY---VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNT----VTYNSMISAYAKNG 60
           I N GSY     N+   I +    G +  A  +  ++ Q+ +    V + S++S YAK G
Sbjct: 135 IPNYGSYRRGFSNEEALILRRLSEGGLVHARHLLDKIPQRGSINRVVYWTSLLSKYAKTG 194

Query: 61  RVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTR 120
            +++AR LFE MP+RN+V+ N+M+ GY+   ++ EA  LF +M + ++ SW +M+T    
Sbjct: 195 YLDEARVLFEVMPERNIVTCNAMLTGYVKCRRMNEAWTLFREMPK-NVVSWTVMLTALCD 253

Query: 121 KGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG 180
            G  E A ELFD +P + +   WN +V G  + G+  +AK++ DAMPS+++VSWN+M+ G
Sbjct: 254 DGRSEDAVELFDEMPER-NVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKG 312

Query: 181 YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
           Y +N  M  A   F  M E++VV+W  M+ GY    D+  A++ F ++PE+N+VSW  M+
Sbjct: 313 YIENDGMEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMI 372

Query: 241 SGYARNGRMLEARRLFDQMPIR-NVVAWNA---MIAAYVQRGQIEEAARLFIEMPERNPV 296
           SG+A N    EA  LF +M    + V+ N    +  AY   G   E  RL  ++  +   
Sbjct: 373 SGFAWNELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVEFRRLGEQLHAQVIS 432

Query: 297 SWTTMIDGYVRIAK-----------LDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
           +    +D   R+AK           +  A+ LL++    ++ +   +I+ Y++N  ++ A
Sbjct: 433 NGWETVDHDGRLAKSLVHMYASSGLIASAQSLLNE--SFDLQSCNIIINRYLKNGDLERA 490

Query: 346 NQIFDKIGT-HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQM 404
             +F+++ + HD V W  MI GY + G +  A  LF+++ +KD VTW  MI         
Sbjct: 491 ETLFERVKSLHDKVSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVTWTVMI--------- 541

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSA 464
                                  SG +QNE   +A  +   M + G K  +ST +  LS+
Sbjct: 542 -----------------------SGLVQNELFAEAASLLSDMVRCGLKPLNSTYSVLLSS 578

Query: 465 CAHLAALQLGRQIHHLAIKSG--YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
               + L  G+ IH +  K+   Y  DL + NSL++MYAKCG I++A  +F      D +
Sbjct: 579 AGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYAKCGAIEDAYEIFAKMVQKDTV 638

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           SWNS+I G + +G A +A+ LF+EM+  G  P+ VTF+GVLSACSH GL+  GL+LF+ M
Sbjct: 639 SWNSMIMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLSACSHSGLITRGLELFKAM 698

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIK- 641
            E Y+I+P ++HY  MIDLL RAG+L EA E +  +   P+  ++G LLG C ++   K 
Sbjct: 699 KETYSIQPGIDHYISMIDLLGRAGKLKEAEEFISALPFTPDHTVYGALLGLCGLNWRDKD 758

Query: 642 ---LGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWI 698
              +   A  +L EL+P     +  L N++A  GR D  +++R  M   G +K PGCSW+
Sbjct: 759 AEGIAERAAMRLLELDPVNAPGHVALCNVYAGLGRHDMEKEMRKEMGIKGVKKTPGCSWV 818

Query: 699 EVKNQIHTFLSGDPKQCRTAEI 720
            V  + + FLSGD      A++
Sbjct: 819 VVNGRANVFLSGDKSASEAAQM 840



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
           ++  LK + +  S + +     + L +   +   I   +     + +  NS++S YAK G
Sbjct: 561 VRCGLKPLNSTYSVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYAKCG 620

Query: 61  RVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMIT 116
            + DA ++F +M Q++ VSWNSMI G  H+    +A  LF +M     +P+  ++  +++
Sbjct: 621 AIEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLS 680

Query: 117 CYTRKGELEKARELFDLLPN----KEDTACWNAMVAGYAKIGNYNEAKKLLDAMP 167
             +  G + +  ELF  +      +     + +M+    + G   EA++ + A+P
Sbjct: 681 ACSHSGLITRGLELFKAMKETYSIQPGIDHYISMIDLLGRAGKLKEAEEFISALP 735


>gi|18398422|ref|NP_564401.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806407|sp|P0C7R0.1|PPR69_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g32415, mitochondrial; Flags: Precursor
 gi|332193363|gb|AEE31484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 256/742 (34%), Positives = 403/742 (54%), Gaps = 65/742 (8%)

Query: 8   IGNKGSY---VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNT----VTYNSMISAYAKNG 60
           I N GSY     N+   I +    G +  A  +  ++ Q+ +    V + S++S YAK G
Sbjct: 32  IPNYGSYRRGFSNEEALILRRLSEGGLVHARHLLDKIPQRGSINRVVYWTSLLSKYAKTG 91

Query: 61  RVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTR 120
            +++AR LFE MP+RN+V+ N+M+ GY+   ++ EA  LF +M + ++ SW +M+T    
Sbjct: 92  YLDEARVLFEVMPERNIVTCNAMLTGYVKCRRMNEAWTLFREMPK-NVVSWTVMLTALCD 150

Query: 121 KGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG 180
            G  E A ELFD +P + +   WN +V G  + G+  +AK++ DAMPS+++VSWN+M+ G
Sbjct: 151 DGRSEDAVELFDEMPER-NVVSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVVSWNAMIKG 209

Query: 181 YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
           Y +N  M  A   F  M E++VV+W  M+ GY    D+  A++ F ++PE+N+VSW  M+
Sbjct: 210 YIENDGMEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDVREAYRLFCEMPERNIVSWTAMI 269

Query: 241 SGYARNGRMLEARRLFDQMPIR-NVVAWNA---MIAAYVQRGQIEEAARLFIEMPERNPV 296
           SG+A N    EA  LF +M    + V+ N    +  AY   G   E  RL  ++  +   
Sbjct: 270 SGFAWNELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVEFRRLGEQLHAQVIS 329

Query: 297 SWTTMIDGYVRIAK-----------LDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
           +    +D   R+AK           +  A+ LL++    ++ +   +I+ Y++N  ++ A
Sbjct: 330 NGWETVDHDGRLAKSLVHMYASSGLIASAQSLLNE--SFDLQSCNIIINRYLKNGDLERA 387

Query: 346 NQIFDKIGT-HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQM 404
             +F+++ + HD V W  MI GY + G +  A  LF+++ +KD VTW  MI         
Sbjct: 388 ETLFERVKSLHDKVSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVTWTVMI--------- 438

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSA 464
                                  SG +QNE   +A  +   M + G K  +ST +  LS+
Sbjct: 439 -----------------------SGLVQNELFAEAASLLSDMVRCGLKPLNSTYSVLLSS 475

Query: 465 CAHLAALQLGRQIHHLAIKSG--YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
               + L  G+ IH +  K+   Y  DL + NSL++MYAKCG I++A  +F      D +
Sbjct: 476 AGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYAKCGAIEDAYEIFAKMVQKDTV 535

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           SWNS+I G + +G A +A+ LF+EM+  G  P+ VTF+GVLSACSH GL+  GL+LF+ M
Sbjct: 536 SWNSMIMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLSACSHSGLITRGLELFKAM 595

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIK- 641
            E Y+I+P ++HY  MIDLL RAG+L EA E +  +   P+  ++G LLG C ++   K 
Sbjct: 596 KETYSIQPGIDHYISMIDLLGRAGKLKEAEEFISALPFTPDHTVYGALLGLCGLNWRDKD 655

Query: 642 ---LGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWI 698
              +   A  +L EL+P     +  L N++A  GR D  +++R  M   G +K PGCSW+
Sbjct: 656 AEGIAERAAMRLLELDPVNAPGHVALCNVYAGLGRHDMEKEMRKEMGIKGVKKTPGCSWV 715

Query: 699 EVKNQIHTFLSGDPKQCRTAEI 720
            V  + + FLSGD      A++
Sbjct: 716 VVNGRANVFLSGDKSASEAAQM 737



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
           ++  LK + +  S + +     + L +   +   I   +     + +  NS++S YAK G
Sbjct: 458 VRCGLKPLNSTYSVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYAKCG 517

Query: 61  RVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMIT 116
            + DA ++F +M Q++ VSWNSMI G  H+    +A  LF +M     +P+  ++  +++
Sbjct: 518 AIEDAYEIFAKMVQKDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLS 577

Query: 117 CYTRKGELEKARELFDLLPN----KEDTACWNAMVAGYAKIGNYNEAKKLLDAMP 167
             +  G + +  ELF  +      +     + +M+    + G   EA++ + A+P
Sbjct: 578 ACSHSGLITRGLELFKAMKETYSIQPGIDHYISMIDLLGRAGKLKEAEEFISALP 632


>gi|357148182|ref|XP_003574661.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 553

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/533 (37%), Positives = 323/533 (60%), Gaps = 2/533 (0%)

Query: 197 MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA-RRL 255
           +  R +V  N  +       D+ +A + F  +P ++VVSW  +L+   R GR L A RRL
Sbjct: 2   LATRLLVRDNQRITALARAGDVAAARRVFDAMPRRDVVSWNALLTALWRAGRDLPAARRL 61

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR 315
           FD MP RNV++WN+++A  +  G ++ A+  F   P RN  SW  M+ G VR+ ++D+A 
Sbjct: 62  FDDMPSRNVISWNSVVAGCLAHGDLDAASAYFARAPRRNVASWNAMLAGLVRLGRMDDAW 121

Query: 316 RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
            L  +MP +N+ + T M+ G  +   +  A ++FD +   ++V W  MI GY +    DE
Sbjct: 122 ALFGEMPQRNVVSYTTMVDGLARRGEVARAREVFDAMPERNLVSWAAMITGYVENAMFDE 181

Query: 376 AINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEF 435
           A  LF  M +K++V    MI GY +   ++ A ++F+ +   ++ +SWNA+I+G++ N  
Sbjct: 182 ARKLFEAMPDKNVVACTAMITGYCKDGDVESARRLFDGI-PVKDVISWNAMITGYVHNGH 240

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS 495
             +A+K+ ++M +EG K DH+TL   L+AC+ LA L+ GR  H +A K+   +     N+
Sbjct: 241 GEEAMKLHIIMFREGVKPDHATLIAILTACSALALLRQGRSTHAVATKTMLESSTSFCNA 300

Query: 496 LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555
           L+TMY+KCG +  +EL+F +    D++SWN++IA YA +G   +AI LF EM   G+ P+
Sbjct: 301 LMTMYSKCGNVGESELVFMNLKIQDIVSWNTIIAAYAQHGKYQKAIALFHEMETRGLIPN 360

Query: 556 PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV 615
            +T + +LSAC HVG V+  L+LF+ M+  YAI P  EHYAC++D+L RAG+L++A   +
Sbjct: 361 DITILSMLSACGHVGRVNDSLELFDLMSSKYAISPSAEHYACVVDILGRAGQLEKACSYI 420

Query: 616 KGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWD 675
           K M  +    +WG LLGA + H N++LG +A + L + +   +  Y +LSN++A AG W 
Sbjct: 421 KKMPFEAERNVWGALLGASKTHGNVQLGELAAKMLVQSDSVSSGPYVMLSNIYAAAGMWG 480

Query: 676 EVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLA 728
           EV +VR  M+  G +KQPG SW E+ N+++ F+ GD       +I + L+ ++
Sbjct: 481 EVNRVRGQMKEKGVKKQPGYSWTEIANKVNMFVGGDASHPEMNKIISELRKIS 533



 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 158/492 (32%), Positives = 247/492 (50%), Gaps = 57/492 (11%)

Query: 115 ITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIG-NYNEAKKLLDAMPSKNIVS 173
           IT   R G++  AR +FD +P + D   WNA++    + G +   A++L D MPS+N++S
Sbjct: 14  ITALARAGDVAAARRVFDAMP-RRDVVSWNALLTALWRAGRDLPAARRLFDDMPSRNVIS 72

Query: 174 WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV 233
           WNS+++G   +G++  AS +F     R+V SWN ML G V L  +D AW  F ++P++NV
Sbjct: 73  WNSVVAGCLAHGDLDAASAYFARAPRRNVASWNAMLAGLVRLGRMDDAWALFGEMPQRNV 132

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           VS+ TM+ G AR G +  AR +FD MP RN+V+W AMI  YV+    +EA +LF  MP++
Sbjct: 133 VSYTTMVDGLARRGEVARAREVFDAMPERNLVSWAAMITGYVENAMFDEARKLFEAMPDK 192

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF---- 349
           N V+ T MI GY +   ++ ARRL D +P K++ +  AMI+GYV N   +EA ++     
Sbjct: 193 NVVACTAMITGYCKDGDVESARRLFDGIPVKDVISWNAMITGYVHNGHGEEAMKLHIIMF 252

Query: 350 -------------------------DKIGTHDVVC----------WNVMIKGYAQCGRMD 374
                                        TH V             N ++  Y++CG + 
Sbjct: 253 REGVKPDHATLIAILTACSALALLRQGRSTHAVATKTMLESSTSFCNALMTMYSKCGNVG 312

Query: 375 EAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
           E+  +F  +  +DIV+WNT+IA YAQ  +   A+ +F EM + R  +  +  I   L   
Sbjct: 313 ESELVFMNLKIQDIVSWNTIIAAYAQHGKYQKAIALFHEM-ETRGLIPNDITILSMLSAC 371

Query: 435 FHL----DALKIFVLMTQE---GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV 487
            H+    D+L++F LM+ +      A+H   AC +       A QL +   ++  K  + 
Sbjct: 372 GHVGRVNDSLELFDLMSSKYAISPSAEH--YACVVDILGR--AGQLEKACSYIK-KMPFE 426

Query: 488 NDLFVGNSLITMYAKCGRIQNAELLFK---DADPVDVISWNSLIAGYAINGNATEAIKLF 544
            +  V  +L+      G +Q  EL  K    +D V    +  L   YA  G   E  ++ 
Sbjct: 427 AERNVWGALLGASKTHGNVQLGELAAKMLVQSDSVSSGPYVMLSNIYAAAGMWGEVNRVR 486

Query: 545 EEMVMEGVAPDP 556
            +M  +GV   P
Sbjct: 487 GQMKEKGVKKQP 498



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 124/390 (31%), Positives = 220/390 (56%), Gaps = 14/390 (3%)

Query: 41  MSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDK-VKEAREL 99
           ++ +  V  N  I+A A+ G V  AR++F+ MP+R++VSWN+++       + +  AR L
Sbjct: 2   LATRLLVRDNQRITALARAGDVAAARRVFDAMPRRDVVSWNALLTALWRAGRDLPAARRL 61

Query: 100 FDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA 159
           FD M   ++ SW  ++      G+L+ A   F   P + + A WNAM+AG  ++G  ++A
Sbjct: 62  FDDMPSRNVISWNSVVAGCLAHGDLDAASAYFARAP-RRNVASWNAMLAGLVRLGRMDDA 120

Query: 160 KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLD 219
             L   MP +N+VS+ +M+ G  + GE+  A + F+AM ER++VSW  M+ GYVE    D
Sbjct: 121 WALFGEMPQRNVVSYTTMVDGLARRGEVARAREVFDAMPERNLVSWAAMITGYVENAMFD 180

Query: 220 SAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ 279
            A K F+ +P++NVV+   M++GY ++G +  ARRLFD +P+++V++WNAMI  YV  G 
Sbjct: 181 EARKLFEAMPDKNVVACTAMITGYCKDGDVESARRLFDGIPVKDVISWNAMITGYVHNGH 240

Query: 280 IEEAARL----FIEMPERNPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTA 331
            EEA +L    F E  + +  +   ++     +A L + R         M   + +   A
Sbjct: 241 GEEAMKLHIIMFREGVKPDHATLIAILTACSALALLRQGRSTHAVATKTMLESSTSFCNA 300

Query: 332 MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI--- 388
           +++ Y +   + E+  +F  +   D+V WN +I  YAQ G+  +AI LF +M  + +   
Sbjct: 301 LMTMYSKCGNVGESELVFMNLKIQDIVSWNTIIAAYAQHGKYQKAIALFHEMETRGLIPN 360

Query: 389 -VTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
            +T  +M++    + +++D++++F+ M  +
Sbjct: 361 DITILSMLSACGHVGRVNDSLELFDLMSSK 390



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 193/361 (53%), Gaps = 45/361 (12%)

Query: 15  VFNQNKKITQLGKSGR-VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP 73
           V + N  +T L ++GR +  A ++F  M  +N +++NS+++    +G ++ A   F + P
Sbjct: 38  VVSWNALLTALWRAGRDLPAARRLFDDMPSRNVISWNSVVAGCLAHGDLDAASAYFARAP 97

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDL 133
           +RN+ SWN+M+AG +   ++ +A  LF +M + ++ S+  M+    R+GE+ +ARE+FD 
Sbjct: 98  RRNVASWNAMLAGLVRLGRMDDAWALFGEMPQRNVVSYTTMVDGLARRGEVARAREVFDA 157

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
           +P + +   W AM+ GY +   ++EA+KL +AMP KN+V+  +M++GY K+G++  A + 
Sbjct: 158 MPER-NLVSWAAMITGYVENAMFDEARKLFEAMPDKNVVACTAMITGYCKDGDVESARRL 216

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWK----------------------------FF 225
           F+ +  +DV+SWN M+ GYV     + A K                              
Sbjct: 217 FDGIPVKDVISWNAMITGYVHNGHGEEAMKLHIIMFREGVKPDHATLIAILTACSALALL 276

Query: 226 QKIPEQNVVSWVTMLSG-----------YARNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
           ++    + V+  TML             Y++ G + E+  +F  + I+++V+WN +IAAY
Sbjct: 277 RQGRSTHAVATKTMLESSTSFCNALMTMYSKCGNVGESELVFMNLKIQDIVSWNTIIAAY 336

Query: 275 VQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT 330
            Q G+ ++A  LF EM  R    N ++  +M+     + +++++  L D M  K   + +
Sbjct: 337 AQHGKYQKAIALFHEMETRGLIPNDITILSMLSACGHVGRVNDSLELFDLMSSKYAISPS 396

Query: 331 A 331
           A
Sbjct: 397 A 397



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 175/329 (53%), Gaps = 22/329 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  +  L + GR+++A  +F +M Q+N V+Y +M+   A+ G V  AR++F+ MP+
Sbjct: 101 VASWNAMLAGLVRLGRMDDAWALFGEMPQRNVVSYTTMVDGLARRGEVARAREVFDAMPE 160

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RNLVSW +MI GY+ N    EAR+LF+ M   ++ +   MIT Y + G++E AR LFD +
Sbjct: 161 RNLVSWAAMITGYVENAMFDEARKLFEAMPDKNVVACTAMITGYCKDGDVESARRLFDGI 220

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN----------IVSWNSMLSGYTKN 184
           P K D   WNAM+ GY   G+  EA KL   M  +           I++  S L+   + 
Sbjct: 221 PVK-DVISWNAMITGYVHNGHGEEAMKLHIIMFREGVKPDHATLIAILTACSALALLRQG 279

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYA 244
              H  +   + M E      N ++  Y +  ++  +   F  +  Q++VSW T+++ YA
Sbjct: 280 RSTHAVAT--KTMLESSTSFCNALMTMYSKCGNVGESELVFMNLKIQDIVSWNTIIAAYA 337

Query: 245 RNGRMLEARRLFDQMPIRNVVAWN----AMIAAYVQRGQIEEAARLFIEMPERNPVS--- 297
           ++G+  +A  LF +M  R ++  +    +M++A    G++ ++  LF  M  +  +S   
Sbjct: 338 QHGKYQKAIALFHEMETRGLIPNDITILSMLSACGHVGRVNDSLELFDLMSSKYAISPSA 397

Query: 298 --WTTMIDGYVRIAKLDEARRLLDQMPYK 324
             +  ++D   R  +L++A   + +MP++
Sbjct: 398 EHYACVVDILGRAGQLEKACSYIKKMPFE 426


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/613 (36%), Positives = 345/613 (56%), Gaps = 26/613 (4%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N ++  YAK G+  + ++L D MP +N+ +WNS+++G TK G +  A   F +M ERD  
Sbjct: 59  NRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQC 118

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPEQNVV-------SWVTMLSGYARNGRMLEARRLF 256
           +WN M+ G+ + D  + A  +F  + ++  V       S ++  SG     R ++   L 
Sbjct: 119 TWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLI 178

Query: 257 DQMP-IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR 315
            + P + +V   +A++  Y + G + +A ++F EM +RN VSW ++I  Y +     EA 
Sbjct: 179 AKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEAL 238

Query: 316 RLL----------DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIK 365
           ++           D++   ++ +  A +S     + +       DK+  +D++  N  + 
Sbjct: 239 KVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKL-RNDIILSNAFVD 297

Query: 366 GYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
            YA+C R+ EA  +F  M  ++++   +M++GYA       A  +F +M +R N VSWNA
Sbjct: 298 MYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAER-NVVSWNA 356

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485
           LI+G+ QN  + +AL +F L+ +E     H T A  L ACA LA L LG Q H   +K G
Sbjct: 357 LIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHG 416

Query: 486 YV------NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATE 539
           +       +D+FVGNSLI MY KCG ++   L+F+     D +SWN++I G+A NG   E
Sbjct: 417 FKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNE 476

Query: 540 AIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMI 599
           A++LF EM+  G  PD +T IGVLSAC H G V+ G   F  MT  + + PL +HY CM+
Sbjct: 477 ALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMV 536

Query: 600 DLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTS 659
           DLL RAG L+EA  +++ M ++P++ IWG+LL AC++H+NI LG+   EKL E+E   + 
Sbjct: 537 DLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHRNITLGKYVAEKLFEVETSNSG 596

Query: 660 CYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAE 719
            Y LLSNM+AE G+W +   VR  M   G  KQPGCSWI++    H F+  D    R  +
Sbjct: 597 PYVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQPGCSWIKIPGHAHVFMVKDKSHPRKKQ 656

Query: 720 ICNTLKTLAAQIR 732
           I + L  L A++R
Sbjct: 657 IHSLLDILIAEMR 669



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 159/573 (27%), Positives = 274/573 (47%), Gaps = 80/573 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF QN+ I    K G +E+  ++F +M Q+N  T+NS+++   K G +++A  LF  MP+
Sbjct: 55  VFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPE 114

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL----FSWALMITCYTRKGELEKAREL 130
           R+  +WNSM++G+  +D+ +EA   F  M +       +++A  ++  +   ++ +  ++
Sbjct: 115 RDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQI 174

Query: 131 FDLL---PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
             L+   P   D    +A+V  Y+K GN N+A+++ D M  +N+VSWNS+++ Y +NG  
Sbjct: 175 HSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPA 234

Query: 188 HLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG- 242
             A K F+ M E     D V+   ++     L  +    +   ++ + + +    +LS  
Sbjct: 235 VEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNA 294

Query: 243 ----YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW 298
               YA+  R+ EAR +FD MPIRNV+A  +M++ Y      + A  +F +M ERN VSW
Sbjct: 295 FVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSW 354

Query: 299 TTMIDGYVRIAKLDEARRLL----------DQMPYKNIAAQTAMIS----GYVQNKRMDE 344
             +I GY +  + +EA  L               + NI    A ++    G   +  + +
Sbjct: 355 NALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLK 414

Query: 345 ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQM 404
               F      D+   N +I  Y +CG ++E   +FR+M+ +D V+WN MI G+AQ    
Sbjct: 415 HGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQ---- 470

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSA 464
                                       N +  +AL++F  M   G+K DH T+   LSA
Sbjct: 471 ----------------------------NGYGNEALELFREMLDSGEKPDHITMIGVLSA 502

Query: 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVG------NSLITMYAKCGRIQNAELLFKDADP 518
           C H   ++ GR  H+    S    D  V         ++ +  + G ++ A+ + ++  P
Sbjct: 503 CGHAGFVEEGR--HYF---SSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEM-P 556

Query: 519 V--DVISWNSLIAGYAINGNAT----EAIKLFE 545
           V  D + W SL+A   ++ N T     A KLFE
Sbjct: 557 VQPDSVIWGSLLAACKVHRNITLGKYVAEKLFE 589



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 110/467 (23%), Positives = 219/467 (46%), Gaps = 76/467 (16%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V+  +  +    K G V +A ++F +M  +N V++NS+I+ Y +NG   +A K+F+ M
Sbjct: 185 SDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVM 244

Query: 73  PQR----NLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGE 123
            +     + V+  S+I+       +K  +E+  ++      R D+      +  Y +   
Sbjct: 245 LESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSR 304

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK 183
           +++AR +FD +P +   A   +MV+GYA   +   A+ +   M  +N+VSWN++++GYT+
Sbjct: 305 IKEARFIFDSMPIRNVIA-ETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQ 363

Query: 184 NGE-----------------------------------MHLASKF----------FEAME 198
           NGE                                   +HL  +           F++ E
Sbjct: 364 NGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGE 423

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
           E D+   N ++D YV+   ++  +  F+K+ E++ VSW  M+ G+A+NG   EA  LF +
Sbjct: 424 EDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFRE 483

Query: 259 M----PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVRIA 309
           M       + +    +++A    G +EE    F  M     V+     +T M+D   R  
Sbjct: 484 MLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAG 543

Query: 310 KLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDK---IGTHDVVCWNVMIK 365
            L+EA+ ++++MP + +     ++++    ++ +     + +K   + T +   + ++  
Sbjct: 544 FLEEAKSIIEEMPVQPDSVIWGSLLAACKVHRNITLGKYVAEKLFEVETSNSGPYVLLSN 603

Query: 366 GYAQCGRMDEAINLFRQMVNKDIVT------WNTMIAGYAQIRQMDD 406
            YA+ G+  +A+N+ R+++ K+ VT      W   I G+A +  + D
Sbjct: 604 MYAELGKWGDAMNV-RKLMRKEGVTKQPGCSW-IKIPGHAHVFMVKD 648



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 118/253 (46%), Gaps = 54/253 (21%)

Query: 456 STLACALSACAHL--AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN----- 508
           S  A  L +C  L  +A+ + R +H   IKSG+ N++F+ N LI  YAKCG +++     
Sbjct: 20  SPFAKLLDSCIKLKLSAIDV-RCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLF 78

Query: 509 --------------------------AELLFKDADPVDVISWNSLIAGYAINGNATEAIK 542
                                     A+ LF+     D  +WNS+++G+A +    EA+ 
Sbjct: 79  DKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALY 138

Query: 543 LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE------CMTEVYAIEPLVEHYA 596
            F  M  EG   +  TF   LSACS +  ++ G+++        C+++VY    LV    
Sbjct: 139 YFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALV---- 194

Query: 597 CMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMH----QNIKLGRIAVEKLSE 652
              D+ S+ G +++A ++   M  + N   W +L+     +    + +K+ ++ +E  S 
Sbjct: 195 ---DMYSKCGNVNDAQQVFDEMGDR-NVVSWNSLITCYEQNGPAVEALKVFQVMLE--SW 248

Query: 653 LEPQKTSCYALLS 665
           +EP + +  +++S
Sbjct: 249 VEPDEVTLASVIS 261


>gi|8671867|gb|AAF78430.1|AC018748_9 Contains similarity to glycerine-rich protein from Nicotiana glauca
           gb|AF151215 and contains multiple PPR PF|01535 repeats
           [Arabidopsis thaliana]
          Length = 816

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 230/652 (35%), Positives = 369/652 (56%), Gaps = 14/652 (2%)

Query: 81  NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
           NS I+ +  N  ++EA  +F +M    + SW  MI+ Y   G++ KA ++FD +P +  T
Sbjct: 54  NSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTT 113

Query: 141 ACWNAMVAGYAK-IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF--EAM 197
           + +NAM+    K   +  +A +L   +P KN VS+ +M++G+ + G    A   +    +
Sbjct: 114 S-YNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAETPV 172

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFD 257
           + RD V+ N++L GY+     + A + FQ +  + VVS  +M+ GY + GR+++AR LFD
Sbjct: 173 KFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFD 232

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-----SWTTMIDG---YVRIA 309
           +M  RNV+ W AMI  Y + G  E+   LF+ M +   V     +   M      +VR  
Sbjct: 233 RMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYR 292

Query: 310 KLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
           +  +   L+ +MP + ++    +++S Y +   M EA  +F  +   D V WN +I G  
Sbjct: 293 EGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLV 352

Query: 369 QCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
           Q  ++ EA  LF +M  KD+V+W  MI G++   ++   V++F  M ++ N ++W A+IS
Sbjct: 353 QRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDN-ITWTAMIS 411

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
            F+ N ++ +AL  F  M Q+    +  T +  LSA A LA L  G QIH   +K   VN
Sbjct: 412 AFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVN 471

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           DL V NSL++MY KCG   +A  +F      +++S+N++I+GY+ NG   +A+KLF  + 
Sbjct: 472 DLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLE 531

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
             G  P+ VTF+ +LSAC HVG VD G K F+ M   Y IEP  +HYACM+DLL R+G L
Sbjct: 532 SSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLL 591

Query: 609 DEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMH 668
           D+A  ++  M  KP++G+WG+LL A + H  + L  +A +KL ELEP   + Y +LS ++
Sbjct: 592 DDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLY 651

Query: 669 AEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           +  G+  + +++    +    +K PG SWI +K ++H FL+GD  Q    EI
Sbjct: 652 SIIGKNRDCDRIMNIKKSKRIKKDPGSSWIILKGEVHNFLAGDESQLNLEEI 703



 Score =  254 bits (650), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 161/522 (30%), Positives = 276/522 (52%), Gaps = 52/522 (9%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F  N +I++  ++G ++EA  IF QMS ++ V++ +MISAYA+NG+++ A ++F++MP 
Sbjct: 50  IFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPV 109

Query: 75  RNLVSWNSMIAGYLHND-KVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDL 133
           R   S+N+MI   + N   + +A ELF  +   +  S+A MIT + R G  ++A  L+  
Sbjct: 110 RVTTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAE 169

Query: 134 LPNK-EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
            P K  D+   N +++GY + G +NEA ++   M  K +VS +SM+ GY K G +  A  
Sbjct: 170 TPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARS 229

Query: 193 FFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ--------------------- 231
            F+ M ER+V++W  M+DGY +    +  +  F ++ ++                     
Sbjct: 230 LFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFV 289

Query: 232 ---------NVVSWV----------TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
                     +VS +          +++S Y++ G M EA+ +F  M  ++ V+WN++I 
Sbjct: 290 RYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLIT 349

Query: 273 AYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAM 332
             VQR QI EA  LF +MP ++ VSWT MI G+    ++ +   L   MP K+    TAM
Sbjct: 350 GLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNITWTAM 409

Query: 333 ISGYVQNKRMDEANQIFDKIGTHDVV----CWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
           IS +V N   +EA   F K+   +V      ++ ++   A    + E + +  ++V  +I
Sbjct: 410 ISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNI 469

Query: 389 V----TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
           V      N++++ Y +    +DA KIF  + +  N VS+N +ISG+  N F   ALK+F 
Sbjct: 470 VNDLSVQNSLVSMYCKCGNTNDAYKIFSCISE-PNIVSYNTMISGYSYNGFGKKALKLFS 528

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
           ++   GK+ +  T    LSAC H+  + LG + +  ++KS Y
Sbjct: 529 MLESSGKEPNGVTFLALLSACVHVGYVDLGWK-YFKSMKSSY 569



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 150/292 (51%), Gaps = 18/292 (6%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF 109
           NS++S Y+K G + +A+ +F  M  ++ VSWNS+I G +   ++ EA ELF+KM   D+ 
Sbjct: 314 NSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDMV 373

Query: 110 SWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA----KKLLDA 165
           SW  MI  ++ KGE+ K  ELF ++P K D   W AM++ +   G Y EA     K+L  
Sbjct: 374 SWTDMIKGFSGKGEISKCVELFGMMPEK-DNITWTAMISAFVSNGYYEEALCWFHKMLQK 432

Query: 166 MPSKNIVSWNSMLSGYTKNGE----MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA 221
               N  +++S+LS      +    + +  +  +     D+   N ++  Y +  + + A
Sbjct: 433 EVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDA 492

Query: 222 WKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQR 277
           +K F  I E N+VS+ TM+SGY+ NG   +A +LF  +       N V + A+++A V  
Sbjct: 493 YKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHV 552

Query: 278 GQIEEAARLFIEMP-----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
           G ++   + F  M      E  P  +  M+D   R   LD+A  L+  MP K
Sbjct: 553 GYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCK 604



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 188/420 (44%), Gaps = 56/420 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F  N  ++   K G + EA  +F  M  K++V++NS+I+   +  ++++A +LFE+MP 
Sbjct: 310 LFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPG 369

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           +++VSW  MI G+    ++ +  ELF  M   D  +W  MI+ +   G  E+A   F  +
Sbjct: 370 KDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKM 429

Query: 135 PNKE--------------------------------------DTACWNAMVAGYAKIGNY 156
             KE                                      D +  N++V+ Y K GN 
Sbjct: 430 LQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNT 489

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGY 212
           N+A K+   +   NIVS+N+M+SGY+ NG    A K F  +E    E + V++  +L   
Sbjct: 490 NDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSAC 549

Query: 213 VELDDLDSAWKFFQKIP-----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVA 266
           V +  +D  WK+F+ +      E     +  M+    R+G + +A  L   MP + +   
Sbjct: 550 VHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCKPHSGV 609

Query: 267 WNAMIAA---YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
           W ++++A   +++    E AA+  IE+   +   +  +   Y  I K  +  R+++    
Sbjct: 610 WGSLLSASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSIIGKNRDCDRIMNIKKS 669

Query: 324 KNIAAQTA----MISGYVQNKRMDEANQI-FDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
           K I         ++ G V N    + +Q+  ++I         V+I    + G+ +  IN
Sbjct: 670 KRIKKDPGSSWIILKGEVHNFLAGDESQLNLEEIAICGFFALMVIIVCILEWGKKETVIN 729


>gi|12324033|gb|AAG51982.1|AC024260_20 hypothetical protein; 70922-66390 [Arabidopsis thaliana]
          Length = 839

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 230/652 (35%), Positives = 369/652 (56%), Gaps = 14/652 (2%)

Query: 81  NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
           NS I+ +  N  ++EA  +F +M    + SW  MI+ Y   G++ KA ++FD +P +  T
Sbjct: 54  NSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPVRVTT 113

Query: 141 ACWNAMVAGYAK-IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF--EAM 197
           + +NAM+    K   +  +A +L   +P KN VS+ +M++G+ + G    A   +    +
Sbjct: 114 S-YNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAETPV 172

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFD 257
           + RD V+ N++L GY+     + A + FQ +  + VVS  +M+ GY + GR+++AR LFD
Sbjct: 173 KFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFD 232

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-----SWTTMIDG---YVRIA 309
           +M  RNV+ W AMI  Y + G  E+   LF+ M +   V     +   M      +VR  
Sbjct: 233 RMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYR 292

Query: 310 KLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
           +  +   L+ +MP + ++    +++S Y +   M EA  +F  +   D V WN +I G  
Sbjct: 293 EGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLV 352

Query: 369 QCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
           Q  ++ EA  LF +M  KD+V+W  MI G++   ++   V++F  M ++ N ++W A+IS
Sbjct: 353 QRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDN-ITWTAMIS 411

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
            F+ N ++ +AL  F  M Q+    +  T +  LSA A LA L  G QIH   +K   VN
Sbjct: 412 AFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVN 471

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           DL V NSL++MY KCG   +A  +F      +++S+N++I+GY+ NG   +A+KLF  + 
Sbjct: 472 DLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLE 531

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
             G  P+ VTF+ +LSAC HVG VD G K F+ M   Y IEP  +HYACM+DLL R+G L
Sbjct: 532 SSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLL 591

Query: 609 DEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMH 668
           D+A  ++  M  KP++G+WG+LL A + H  + L  +A +KL ELEP   + Y +LS ++
Sbjct: 592 DDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLY 651

Query: 669 AEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           +  G+  + +++    +    +K PG SWI +K ++H FL+GD  Q    EI
Sbjct: 652 SIIGKNRDCDRIMNIKKSKRIKKDPGSSWIILKGEVHNFLAGDESQLNLEEI 703



 Score =  255 bits (651), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 161/522 (30%), Positives = 276/522 (52%), Gaps = 52/522 (9%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F  N +I++  ++G ++EA  IF QMS ++ V++ +MISAYA+NG+++ A ++F++MP 
Sbjct: 50  IFQCNSQISKHARNGNLQEAEAIFRQMSNRSIVSWIAMISAYAENGKMSKAWQVFDEMPV 109

Query: 75  RNLVSWNSMIAGYLHND-KVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDL 133
           R   S+N+MI   + N   + +A ELF  +   +  S+A MIT + R G  ++A  L+  
Sbjct: 110 RVTTSYNAMITAMIKNKCDLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAE 169

Query: 134 LPNK-EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
            P K  D+   N +++GY + G +NEA ++   M  K +VS +SM+ GY K G +  A  
Sbjct: 170 TPVKFRDSVASNVLLSGYLRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARS 229

Query: 193 FFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ--------------------- 231
            F+ M ER+V++W  M+DGY +    +  +  F ++ ++                     
Sbjct: 230 LFDRMTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFV 289

Query: 232 ---------NVVSWV----------TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
                     +VS +          +++S Y++ G M EA+ +F  M  ++ V+WN++I 
Sbjct: 290 RYREGSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLIT 349

Query: 273 AYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAM 332
             VQR QI EA  LF +MP ++ VSWT MI G+    ++ +   L   MP K+    TAM
Sbjct: 350 GLVQRKQISEAYELFEKMPGKDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNITWTAM 409

Query: 333 ISGYVQNKRMDEANQIFDKIGTHDVV----CWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
           IS +V N   +EA   F K+   +V      ++ ++   A    + E + +  ++V  +I
Sbjct: 410 ISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNI 469

Query: 389 V----TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
           V      N++++ Y +    +DA KIF  + +  N VS+N +ISG+  N F   ALK+F 
Sbjct: 470 VNDLSVQNSLVSMYCKCGNTNDAYKIFSCISE-PNIVSYNTMISGYSYNGFGKKALKLFS 528

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
           ++   GK+ +  T    LSAC H+  + LG + +  ++KS Y
Sbjct: 529 MLESSGKEPNGVTFLALLSACVHVGYVDLGWK-YFKSMKSSY 569



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 150/292 (51%), Gaps = 18/292 (6%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF 109
           NS++S Y+K G + +A+ +F  M  ++ VSWNS+I G +   ++ EA ELF+KM   D+ 
Sbjct: 314 NSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDMV 373

Query: 110 SWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA----KKLLDA 165
           SW  MI  ++ KGE+ K  ELF ++P K D   W AM++ +   G Y EA     K+L  
Sbjct: 374 SWTDMIKGFSGKGEISKCVELFGMMPEK-DNITWTAMISAFVSNGYYEEALCWFHKMLQK 432

Query: 166 MPSKNIVSWNSMLSGYTKNGE----MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA 221
               N  +++S+LS      +    + +  +  +     D+   N ++  Y +  + + A
Sbjct: 433 EVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDA 492

Query: 222 WKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQR 277
           +K F  I E N+VS+ TM+SGY+ NG   +A +LF  +       N V + A+++A V  
Sbjct: 493 YKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHV 552

Query: 278 GQIEEAARLFIEMP-----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
           G ++   + F  M      E  P  +  M+D   R   LD+A  L+  MP K
Sbjct: 553 GYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCK 604



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 188/420 (44%), Gaps = 56/420 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F  N  ++   K G + EA  +F  M  K++V++NS+I+   +  ++++A +LFE+MP 
Sbjct: 310 LFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPG 369

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           +++VSW  MI G+    ++ +  ELF  M   D  +W  MI+ +   G  E+A   F  +
Sbjct: 370 KDMVSWTDMIKGFSGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKM 429

Query: 135 PNKE--------------------------------------DTACWNAMVAGYAKIGNY 156
             KE                                      D +  N++V+ Y K GN 
Sbjct: 430 LQKEVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNT 489

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGY 212
           N+A K+   +   NIVS+N+M+SGY+ NG    A K F  +E    E + V++  +L   
Sbjct: 490 NDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSAC 549

Query: 213 VELDDLDSAWKFFQKIP-----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVA 266
           V +  +D  WK+F+ +      E     +  M+    R+G + +A  L   MP + +   
Sbjct: 550 VHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCKPHSGV 609

Query: 267 WNAMIAA---YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
           W ++++A   +++    E AA+  IE+   +   +  +   Y  I K  +  R+++    
Sbjct: 610 WGSLLSASKTHLRVDLAELAAKKLIELEPDSATPYVVLSQLYSIIGKNRDCDRIMNIKKS 669

Query: 324 KNIAAQTA----MISGYVQNKRMDEANQI-FDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
           K I         ++ G V N    + +Q+  ++I         V+I    + G+ +  IN
Sbjct: 670 KRIKKDPGSSWIILKGEVHNFLAGDESQLNLEEIAICGFFALMVIIVCILEWGKKETVIN 729


>gi|302802806|ref|XP_002983157.1| hypothetical protein SELMODRAFT_117419 [Selaginella moellendorffii]
 gi|300149310|gb|EFJ15966.1| hypothetical protein SELMODRAFT_117419 [Selaginella moellendorffii]
          Length = 704

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/642 (33%), Positives = 353/642 (54%), Gaps = 42/642 (6%)

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
           Y  N  +  A+ +FD++   ++ SW  +I  +++ G +  A E+F  +P +  ++ WN+M
Sbjct: 4   YSENGDLGSAKAIFDQIPSHNVVSWNSLIAGFSQHGFMSNADEIFARMP-RWSSSSWNSM 62

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK-FFEAMEERDVVSW 205
           + GYA+ G+   A  + D  P  N++SWN++++GY+ N  +  A    F+ M  R+ VSW
Sbjct: 63  ITGYAQSGDLAGATAMFDRTPEHNVISWNALITGYSDNRMIPEAKGVIFDEMPRREEVSW 122

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
           N +L  Y +   +  A   F+++P  +VV+W  +++   +NG++ EA  L+D +P R++V
Sbjct: 123 NALLSAYAQAGHVHLARSTFERMPRHDVVAWTALIAVSGQNGQLEEAEVLYDLIPERDLV 182

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           AW A+I AY   GQ+ E+ R++  MPERN VS T MI  Y +  ++ +AR++LD +P  +
Sbjct: 183 AWTALIQAYGVNGQLTESKRVYALMPERNRVSHTAMIIAYSQNGEVVQARKMLDTLPDPD 242

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
            + +T+MI  Y QN  + +A ++FD I   DV+  N M++ Y+    +D A  +F  +  
Sbjct: 243 QSTRTSMIVAYAQNGYIKDAREMFDSIKNPDVIACNAMMEAYSSAQMLDHAKAMFDSIKQ 302

Query: 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVL 445
           K +V+WNTM+A YAQ   +D+A  IF+ +   +N VS N ++  +  N    +A +IF  
Sbjct: 303 KTLVSWNTMVAAYAQAGNLDEAKSIFDSI-PHKNVVSHNVMVVAYAHNMDLAEARRIFYS 361

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
           M ++                                       D     +++ M A+ GR
Sbjct: 362 MDEK---------------------------------------DTVTWTAMVAMLAQHGR 382

Query: 506 IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565
           +  A+ LF      +V+SWNSLIAG A  G+   A++    M  EG  PD +TF+G+L A
Sbjct: 383 LAEAQELFAKMPYRNVVSWNSLIAGMASCGHGMAAVRYLYVMRNEGAKPDHITFMGILIA 442

Query: 566 CSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAG 625
           CSHVGLV+ G   F  M   + + P  EHY  M+D+L RAG+L  A E+++ M   P+ G
Sbjct: 443 CSHVGLVEEGWTHFTSMQGDHGLIPWREHYCRMVDVLGRAGQLGAARELLETMPFIPDVG 502

Query: 626 IWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685
            WG+LLG+C+ H ++KLG  A E L + + Q +  Y LL+NM++  GR  +   VR  M+
Sbjct: 503 AWGSLLGSCKTHSDVKLGTRAAESLLQFDDQSSGPYVLLANMYSSVGRVADALAVRNRMK 562

Query: 686 GSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
             G +KQPG S I V   +H F++G+    R  EI + L  L
Sbjct: 563 ARGVKKQPGVSLIRVDGVLHRFVAGEASHPRHQEILSELSRL 604



 Score =  283 bits (723), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 148/450 (32%), Positives = 243/450 (54%), Gaps = 32/450 (7%)

Query: 56  YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMI 115
           Y++NG +  A+ +F+Q+P  N+VSWNS+IAG+  +  +  A E+F +M R    SW  MI
Sbjct: 4   YSENGDLGSAKAIFDQIPSHNVVSWNSLIAGFSQHGFMSNADEIFARMPRWSSSSWNSMI 63

Query: 116 TCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL-DAMPSKNIVSW 174
           T Y + G+L  A  +FD  P + +   WNA++ GY+      EAK ++ D MP +  VSW
Sbjct: 64  TGYAQSGDLAGATAMFDRTP-EHNVISWNALITGYSDNRMIPEAKGVIFDEMPRREEVSW 122

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
           N++LS Y + G +HLA   FE M   DVV+W  ++    +   L+ A   +  IPE+++V
Sbjct: 123 NALLSAYAQAGHVHLARSTFERMPRHDVVAWTALIAVSGQNGQLEEAEVLYDLIPERDLV 182

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
           +W  ++  Y  NG++ E++R++  MP RN V+  AMI AY Q G++ +A ++   +P+ +
Sbjct: 183 AWTALIQAYGVNGQLTESKRVYALMPERNRVSHTAMIIAYSQNGEVVQARKMLDTLPDPD 242

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
             + T+MI  Y +   + +AR + D +   ++ A  AM+  Y   + +D A  +FD I  
Sbjct: 243 QSTRTSMIVAYAQNGYIKDAREMFDSIKNPDVIACNAMMEAYSSAQMLDHAKAMFDSIKQ 302

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
             +V WN M+  YAQ G +DEA ++F  + +K++V+ N M+  YA    + +A +IF  M
Sbjct: 303 KTLVSWNTMVAAYAQAGNLDEAKSIFDSIPHKNVVSHNVMVVAYAHNMDLAEARRIFYSM 362

Query: 415 GKR------------------------------RNTVSWNALISGFLQNEFHLDALKIFV 444
            ++                              RN VSWN+LI+G       + A++   
Sbjct: 363 DEKDTVTWTAMVAMLAQHGRLAEAQELFAKMPYRNVVSWNSLIAGMASCGHGMAAVRYLY 422

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLG 474
           +M  EG K DH T    L AC+H+  ++ G
Sbjct: 423 VMRNEGAKPDHITFMGILIACSHVGLVEEG 452



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 169/286 (59%), Gaps = 1/286 (0%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  ++   ++G V  A   F +M + + V + ++I+   +NG++ +A  L++ +P+R+LV
Sbjct: 123 NALLSAYAQAGHVHLARSTFERMPRHDVVAWTALIAVSGQNGQLEEAEVLYDLIPERDLV 182

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           +W ++I  Y  N ++ E++ ++  M   +  S   MI  Y++ GE+ +AR++ D LP+  
Sbjct: 183 AWTALIQAYGVNGQLTESKRVYALMPERNRVSHTAMIIAYSQNGEVVQARKMLDTLPDP- 241

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           D +   +M+  YA+ G   +A+++ D++ + ++++ N+M+  Y+    +  A   F++++
Sbjct: 242 DQSTRTSMIVAYAQNGYIKDAREMFDSIKNPDVIACNAMMEAYSSAQMLDHAKAMFDSIK 301

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
           ++ +VSWN M+  Y +  +LD A   F  IP +NVVS   M+  YA N  + EARR+F  
Sbjct: 302 QKTLVSWNTMVAAYAQAGNLDEAKSIFDSIPHKNVVSHNVMVVAYAHNMDLAEARRIFYS 361

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDG 304
           M  ++ V W AM+A   Q G++ EA  LF +MP RN VSW ++I G
Sbjct: 362 MDEKDTVTWTAMVAMLAQHGRLAEAQELFAKMPYRNVVSWNSLIAG 407



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 182/338 (53%), Gaps = 41/338 (12%)

Query: 26  GKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIA 85
           G++G++EEA  ++  + +++ V + ++I AY  NG++ ++++++  MP+RN VS  +MI 
Sbjct: 161 GQNGQLEEAEVLYDLIPERDLVAWTALIQAYGVNGQLTESKRVYALMPERNRVSHTAMII 220

Query: 86  GYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNA 145
            Y  N +V +AR++ D +  PD  +   MI  Y + G ++ ARE+FD + N +  AC NA
Sbjct: 221 AYSQNGEVVQARKMLDTLPDPDQSTRTSMIVAYAQNGYIKDAREMFDSIKNPDVIAC-NA 279

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW 205
           M+  Y+     + AK + D++  K +VSWN+M++ Y + G +  A   F+++  ++VVS 
Sbjct: 280 MMEAYSSAQMLDHAKAMFDSIKQKTLVSWNTMVAAYAQAGNLDEAKSIFDSIPHKNVVSH 339

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
           N+M+  Y    DL  A + F  + E++ V+W  M++  A++GR+ EA+ LF +MP RNVV
Sbjct: 340 NVMVVAYAHNMDLAEARRIFYSMDEKDTVTWTAMVAMLAQHGRLAEAQELFAKMPYRNVV 399

Query: 266 AWNAMIAA--------------YVQR---------------------GQIEEAARLFIEM 290
           +WN++IA               YV R                     G +EE    F  M
Sbjct: 400 SWNSLIAGMASCGHGMAAVRYLYVMRNEGAKPDHITFMGILIACSHVGLVEEGWTHFTSM 459

Query: 291 P-ERNPVSW----TTMIDGYVRIAKLDEARRLLDQMPY 323
             +   + W      M+D   R  +L  AR LL+ MP+
Sbjct: 460 QGDHGLIPWREHYCRMVDVLGRAGQLGAARELLETMPF 497



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 107/209 (51%), Gaps = 11/209 (5%)

Query: 2   KASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGR 61
           K+   SI +K   V + N  +     +  + EA +IF  M +K+TVT+ +M++  A++GR
Sbjct: 325 KSIFDSIPHKN--VVSHNVMVVAYAHNMDLAEARRIFYSMDEKDTVTWTAMVAMLAQHGR 382

Query: 62  VNDARKLFEQMPQRNLVSWNSMIAGYLH-NDKVKEARELF---DKMFRPDLFSWALMITC 117
           + +A++LF +MP RN+VSWNS+IAG       +   R L+   ++  +PD  ++  ++  
Sbjct: 383 LAEAQELFAKMPYRNVVSWNSLIAGMASCGHGMAAVRYLYVMRNEGAKPDHITFMGILIA 442

Query: 118 YTRKGELEKARELFDLLPNKEDTACWNA----MVAGYAKIGNYNEAKKLLDAMPS-KNIV 172
            +  G +E+    F  +        W      MV    + G    A++LL+ MP   ++ 
Sbjct: 443 CSHVGLVEEGWTHFTSMQGDHGLIPWREHYCRMVDVLGRAGQLGAARELLETMPFIPDVG 502

Query: 173 SWNSMLSGYTKNGEMHLASKFFEAMEERD 201
           +W S+L     + ++ L ++  E++ + D
Sbjct: 503 AWGSLLGSCKTHSDVKLGTRAAESLLQFD 531


>gi|302753930|ref|XP_002960389.1| hypothetical protein SELMODRAFT_73601 [Selaginella moellendorffii]
 gi|300171328|gb|EFJ37928.1| hypothetical protein SELMODRAFT_73601 [Selaginella moellendorffii]
          Length = 577

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/571 (36%), Positives = 327/571 (57%), Gaps = 4/571 (0%)

Query: 114 MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS 173
           M+T Y   G    A+ LFD +P   D+  W+ ++  + KIG+   A+++ D +P   +V+
Sbjct: 1   MLTVYAHNGRPWDAKNLFDRIPGGRDSVAWSCLIGAFVKIGDLEHARRVFDLLPRWTVVT 60

Query: 174 WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV 233
             ++L    K G+   A   F AM ERD+V+WN M+  Y +  +L  A   F ++P +N 
Sbjct: 61  STAILVALAKRGKAENARAMFLAMPERDLVAWNAMITAYAQNGNLQVAQAMFFRMPARNF 120

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           VSW  ++ G A+      A+++FD MP R VV+W AM+A Y Q G++EEA  L  +MP  
Sbjct: 121 VSWNAIIDGCAQGQDEALAKKVFDSMPQREVVSWTAMVATYSQSGRLEEAQALLSKMPAL 180

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
           N VSW  MI  +     ++EA+   D+ P  +  +  A+I+ Y Q  ++  A   FD++ 
Sbjct: 181 NIVSWNVMIQAFADNLLVEEAKERFDRAPEHDFVSWNAIITAYAQTSQIFLARAAFDRMP 240

Query: 354 THDVVCWNVMIKGYAQCGR--MDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIF 411
             DVV W  MI+ YAQ G+  MD+A  +F +   +++V+WN MI GY+   ++  +  +F
Sbjct: 241 QRDVVSWATMIQSYAQEGQPSMDQAKEIFDRAPQRNVVSWNVMITGYSASGRIKQSRGLF 300

Query: 412 EEMG--KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           E M      + VSWNALI+G L N     AL++F+ M + G   D ++   AL+ACA LA
Sbjct: 301 ERMPMMAEHDLVSWNALIAGHLDNGLDERALQLFLEMDRRGCSPDPASYTSALAACAGLA 360

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
           +L   R IH    K+G   D FV N+L+  Y K GR+ +AEL+F+    VDV++WN+L A
Sbjct: 361 SLGAARDIHWRLCKAGLETDAFVHNALVDFYGKSGRMADAELVFQSLASVDVVTWNALAA 420

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE 589
           G +  G+    + L   +  +G+ PD +TF+ +L+A  H GLVD G + F  M E Y IE
Sbjct: 421 GLSRQGSYRLVVDLLWAIKDQGLEPDGITFLALLAAYGHAGLVDHGRRAFAAMVETYRIE 480

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649
           P +EHY C++D+L RA RL+EA  +V  M  +P++  W T+L AC   +N+ +  +A E 
Sbjct: 481 PGIEHYHCLVDMLGRANRLEEAVAVVSAMPHRPSSVTWTTVLSACVKWKNLGVASVAFES 540

Query: 650 LSELEPQKTSCYALLSNMHAEAGRWDEVEKV 680
           L  ++P   + Y L++N++  AG  +E  K+
Sbjct: 541 LLGIDPDGPAAYVLMANVYGSAGMAEEEAKL 571



 Score =  251 bits (642), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 157/578 (27%), Positives = 285/578 (49%), Gaps = 54/578 (9%)

Query: 52  MISAYAKNGRVNDARKLFEQMP-QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFS 110
           M++ YA NGR  DA+ LF+++P  R+ V+W+ +I  ++    ++ AR +FD + R  + +
Sbjct: 1   MLTVYAHNGRPWDAKNLFDRIPGGRDSVAWSCLIGAFVKIGDLEHARRVFDLLPRWTVVT 60

Query: 111 WALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN 170
              ++    ++G+ E AR +F  +P + D   WNAM+  YA+ GN   A+ +   MP++N
Sbjct: 61  STAILVALAKRGKAENARAMFLAMPER-DLVAWNAMITAYAQNGNLQVAQAMFFRMPARN 119

Query: 171 IVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPE 230
            VSWN+++ G  +  +  LA K F++M +R+VVSW  M+  Y +   L+ A     K+P 
Sbjct: 120 FVSWNAIIDGCAQGQDEALAKKVFDSMPQREVVSWTAMVATYSQSGRLEEAQALLSKMPA 179

Query: 231 QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
            N+VSW  M+  +A N  + EA+  FD+ P  + V+WNA+I AY Q  QI  A   F  M
Sbjct: 180 LNIVSWNVMIQAFADNLLVEEAKERFDRAPEHDFVSWNAIITAYAQTSQIFLARAAFDRM 239

Query: 291 PERNPVSWTTMIDGYVRIAK--LDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQI 348
           P+R+ VSW TMI  Y +  +  +D+A+ + D+ P +N+ +   MI+GY  + R+ ++  +
Sbjct: 240 PQRDVVSWATMIQSYAQEGQPSMDQAKEIFDRAPQRNVVSWNVMITGYSASGRIKQSRGL 299

Query: 349 FDK---IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM---------------------- 383
           F++   +  HD+V WN +I G+   G  + A+ LF +M                      
Sbjct: 300 FERMPMMAEHDLVSWNALIAGHLDNGLDERALQLFLEMDRRGCSPDPASYTSALAACAGL 359

Query: 384 -----------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNAL 426
                            +  D    N ++  Y +  +M DA  +F+ +    + V+WNAL
Sbjct: 360 ASLGAARDIHWRLCKAGLETDAFVHNALVDFYGKSGRMADAELVFQSLAS-VDVVTWNAL 418

Query: 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
            +G  +   +   + +   +  +G + D  T    L+A  H   +  GR+     +++  
Sbjct: 419 AAGLSRQGSYRLVVDLLWAIKDQGLEPDGITFLALLAAYGHAGLVDHGRRAFAAMVETYR 478

Query: 487 VND-LFVGNSLITMYAKCGRIQNAELLFKDADP--VDVISWNSLIAGYAINGNATEAIKL 543
           +   +   + L+ M  +  R++ A +    A P     ++W ++++      N   A   
Sbjct: 479 IEPGIEHYHCLVDMLGRANRLEEA-VAVVSAMPHRPSSVTWTTVLSACVKWKNLGVASVA 537

Query: 544 FEEMVMEGVAPD-PVTFIGVLSACSHVGLVDGGLKLFE 580
           FE ++  G+ PD P  ++ + +     G+ +   KL E
Sbjct: 538 FESLL--GIDPDGPAAYVLMANVYGSAGMAEEEAKLLE 573



 Score =  243 bits (619), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 133/417 (31%), Positives = 226/417 (54%), Gaps = 18/417 (4%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V      +  L K G+ E A  +F  M +++ V +N+MI+AYA+NG +  A+ +F +MP 
Sbjct: 58  VVTSTAILVALAKRGKAENARAMFLAMPERDLVAWNAMITAYAQNGNLQVAQAMFFRMPA 117

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN VSWN++I G         A+++FD M + ++ SW  M+  Y++ G LE+A+ L   +
Sbjct: 118 RNFVSWNAIIDGCAQGQDEALAKKVFDSMPQREVVSWTAMVATYSQSGRLEEAQALLSKM 177

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P   +   WN M+  +A      EAK+  D  P  + VSWN++++ Y +  ++ LA   F
Sbjct: 178 P-ALNIVSWNVMIQAFADNLLVEEAKERFDRAPEHDFVSWNAIITAYAQTSQIFLARAAF 236

Query: 195 EAMEERDVVSWNLMLDGYVE--LDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA 252
           + M +RDVVSW  M+  Y +     +D A + F + P++NVVSW  M++GY+ +GR+ ++
Sbjct: 237 DRMPQRDVVSWATMIQSYAQEGQPSMDQAKEIFDRAPQRNVVSWNVMITGYSASGRIKQS 296

Query: 253 RRLFDQMPI---RNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGY 305
           R LF++MP+    ++V+WNA+IA ++  G  E A +LF+EM  R    +P S+T+ +   
Sbjct: 297 RGLFERMPMMAEHDLVSWNALIAGHLDNGLDERALQLFLEMDRRGCSPDPASYTSALAAC 356

Query: 306 VRIAKLDEAR----RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWN 361
             +A L  AR    RL       +     A++  Y ++ RM +A  +F  + + DVV WN
Sbjct: 357 AGLASLGAARDIHWRLCKAGLETDAFVHNALVDFYGKSGRMADAELVFQSLASVDVVTWN 416

Query: 362 VMIKGYAQCGRMDEAINLF----RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            +  G ++ G     ++L      Q +  D +T+  ++A Y     +D   + F  M
Sbjct: 417 ALAAGLSRQGSYRLVVDLLWAIKDQGLEPDGITFLALLAAYGHAGLVDHGRRAFAAM 473



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/160 (20%), Positives = 69/160 (43%), Gaps = 9/160 (5%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F  N  +   GKSGR+ +A  +F  ++  + VT+N++ +  ++ G       L   +  +
Sbjct: 382 FVHNALVDFYGKSGRMADAELVFQSLASVDVVTWNALAAGLSRQGSYRLVVDLLWAIKDQ 441

Query: 76  NL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEK 126
            L    +++ +++A Y H   V   R  F  M       P +  +  ++    R   LE+
Sbjct: 442 GLEPDGITFLALLAAYGHAGLVDHGRRAFAAMVETYRIEPGIEHYHCLVDMLGRANRLEE 501

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           A  +   +P++  +  W  +++   K  N   A    +++
Sbjct: 502 AVAVVSAMPHRPSSVTWTTVLSACVKWKNLGVASVAFESL 541


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 234/647 (36%), Positives = 365/647 (56%), Gaps = 47/647 (7%)

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           F  ++F    +I  Y +   L+ AR+LFD +P + +T  WN++++   K G  +EA +L 
Sbjct: 46  FSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQR-NTFTWNSLISVLTKSGFLDEAARLF 104

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV----SWNLMLDGYVELDDLD 219
            +MP  +  SWNSM+SG+ ++     + ++F  M   D +    S+   L     L DL+
Sbjct: 105 GSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLN 164

Query: 220 SAWKFFQKIPEQNVVSWVTMLSG----YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
              +    + +    + V M S     Y++ G +  A  +F  M  RN+V WN++I  Y 
Sbjct: 165 MGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYE 224

Query: 276 QRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
           Q G   EA  +F+ M     E + V+  +++     +  L E  ++              
Sbjct: 225 QNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQI-------------- 270

Query: 332 MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTW 391
                  + R+ + N+  D     D+V  N ++  YA+C +++EA  +F +M  +++V+ 
Sbjct: 271 -------HARVVKTNKFRD-----DLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSE 318

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
            +M++GYA+   +  A  +F +M  +RN VSWNALI+G+ QN  + +AL++F L+ +E  
Sbjct: 319 TSMVSGYARAASVKAARFMFSKM-TQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESI 377

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV------NDLFVGNSLITMYAKCGR 505
              H T    LSACA+LA L LGRQ H   +K G+       +D+FVGNSLI MY KCG 
Sbjct: 378 WPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGS 437

Query: 506 IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565
           I++   +F+     D +SWN++I GYA NG   EA+++F +M++ G  PD VT IGVL A
Sbjct: 438 IEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCA 497

Query: 566 CSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAG 625
           CSH GLV+ G   F  M E + + PL +HY CM+DLL RAG L+EA  +++ M + P+A 
Sbjct: 498 CSHAGLVEEGRHYFFSMEE-HGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAV 556

Query: 626 IWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685
           +WG+LL AC++H NI++G+ A EKL E++P  +  Y LLSNM+AE GRW +V +VR  M 
Sbjct: 557 VWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMR 616

Query: 686 GSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
             G  KQPGCSWIEV++++H FL  D       +I + LK L  Q++
Sbjct: 617 QQGVTKQPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQMK 663



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/432 (29%), Positives = 219/432 (50%), Gaps = 63/432 (14%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F QN+ I   GK   +++A K+F +M Q+NT T+NS+IS   K+G +++A +LF  MP+
Sbjct: 50  IFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPE 109

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL----FSWALMITCYTRKGELEKAREL 130
            +  SWNSM++G+  +D+ +E+ E F KM R D     +S+   ++      +L    ++
Sbjct: 110 PDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQV 169

Query: 131 FDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
             L+       D    +A++  Y+K G+   A+++   M  +N+V+WNS+++ Y +NG  
Sbjct: 170 HALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPA 229

Query: 188 HLASKFFEAMEER----------------------------------------DVVSWNL 207
             A + F  M +                                         D+V  N 
Sbjct: 230 SEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNA 289

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
           ++D Y +   ++ A + F ++  +NVVS  +M+SGYAR   +  AR +F +M  RNVV+W
Sbjct: 290 LVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSW 349

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
           NA+IA Y Q G+ EEA RLF  + +R  +  T    G +  A  + A  LL +  + ++ 
Sbjct: 350 NALIAGYTQNGENEEALRLF-RLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVL 408

Query: 328 AQ---------------TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGR 372
            Q                ++I  Y++   +++ +++F+K+   D V WN +I GYAQ G 
Sbjct: 409 KQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGY 468

Query: 373 MDEAINLFRQMV 384
             EA+ +FR+M+
Sbjct: 469 GAEALQIFRKML 480



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 49/246 (19%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F  N  I    K G +E+  ++F +M +++ V++N++I  YA+NG   +A ++F +M
Sbjct: 420 SDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKM 479

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF- 131
                     ++ G                  +PD  +   ++   +  G +E+ R  F 
Sbjct: 480 ----------LVCGE-----------------KPDHVTMIGVLCACSHAGLVEEGRHYFF 512

Query: 132 -----DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNG 185
                 L+P K+   C   MV    + G  NEAK L++AMP + + V W S+L+    +G
Sbjct: 513 SMEEHGLIPLKDHYTC---MVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHG 569

Query: 186 EMHLASKFFEAMEERDVVSWN-----LMLDGYVEL---DDLDSAWKFF--QKIPEQNVVS 235
            + +     E + E D   WN     L+ + Y EL    D+    K    Q + +Q   S
Sbjct: 570 NIEMGKHAAEKLLEID--PWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCS 627

Query: 236 WVTMLS 241
           W+ + S
Sbjct: 628 WIEVES 633



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 90/213 (42%), Gaps = 45/213 (21%)

Query: 456 STLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC------------ 503
           S  A  L +C    + +  R +H   + + +  ++F+ N LI +Y KC            
Sbjct: 16  SPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDR 75

Query: 504 -------------------GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLF 544
                              G +  A  LF      D  SWNS+++G+A +    E+++ F
Sbjct: 76  MPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYF 135

Query: 545 EEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHY------ACM 598
            +M  E    +  +F   LSAC+  GL+D  +      T+V+A+     +       + +
Sbjct: 136 VKMHREDFLLNEYSFGSALSACA--GLMDLNMG-----TQVHALVSKSRYSTDVYMGSAL 188

Query: 599 IDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           ID+ S+ G +  A E+  GM I+ N   W +L+
Sbjct: 189 IDMYSKCGSVACAEEVFSGM-IERNLVTWNSLI 220


>gi|125550574|gb|EAY96283.1| hypothetical protein OsI_18181 [Oryza sativa Indica Group]
          Length = 661

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/609 (36%), Positives = 337/609 (55%), Gaps = 39/609 (6%)

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS--KNIVSWNSMLSGYTKNGEM 187
           +FD +P ++D   + AMV  +    +   A+ L  A P   + I     ML GY K G++
Sbjct: 80  MFDGMPRRDDAVAYAAMVGIHLWDRDLPHAEALYRAAPPDCRGIHLDTVMLDGYVKAGQV 139

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
             A + F+ M  ++VV+W  M+ GY     +D A + F  +P +NV SW TM+ GYA NG
Sbjct: 140 DRARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPYRNVFSWTTMVQGYAHNG 199

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVR 307
            + EAR +FD+MP RNVVAW  M+ AYV  G I+EA  LF  MP+ N  SW  M  G + 
Sbjct: 200 MLREAREMFDKMPERNVVAWTVMVKAYVDNGCIQEALELFNRMPQMNSYSWNAMATGLMS 259

Query: 308 IAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367
             K+D+A +L D+MP+KN+ + T M++G  QN  +  A + FD++   D+  WN MI  Y
Sbjct: 260 AGKVDDAVQLFDKMPHKNVVSWTIMVTGLAQNGFVSRAREFFDRMPKKDIPAWNSMITAY 319

Query: 368 AQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
              G++++A  LF  M +K++VTWN +I GY+                            
Sbjct: 320 TNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYS---------------------------- 351

Query: 428 SGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV 487
                N    +AL++F+LM +     D +TL   L        +   RQIH L+ K GY 
Sbjct: 352 ----MNNLKDEALRLFLLMLRSAVSPDSTTLISVLVVSESTMEV---RQIHGLSTKLGYQ 404

Query: 488 NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
            +  +GN+L++MY++ G + +A L F+  +  D I+W S+I   A +G A  A++ F +M
Sbjct: 405 PETNLGNTLVSMYSRSGDLSSAWLAFRRLNEKDAITWTSMIQALANHGCAPCALQGFAQM 464

Query: 548 VMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGR 607
           +  G  P   TF  VLSAC+HVGLV+ G K+F+ ++ VY +EP +EHY+C++DLL RAG 
Sbjct: 465 LRCGYKPSSTTFTAVLSACNHVGLVEKGRKIFKSISHVYGLEPTIEHYSCLVDLLGRAGY 524

Query: 608 LDEAFEMVKGMKIK-PNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSN 666
           + EA E+V GM+    +  I GTLLG+C  H  +++GR   E L +++P  +  Y LL+N
Sbjct: 525 VREAKEVVDGMQRDMCDEAILGTLLGSCMTHNEVEVGRAVGEDLVKIDPSGSGGYTLLAN 584

Query: 667 MHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKT 726
           + A  G W+EV  V   M+GS  +K PG S IEV  + H F S D    +  EI   L +
Sbjct: 585 VFASGGMWNEVASVWKIMKGSKVKKTPGFSQIEVNARNHVFYSRDQMHSQRTEIYEMLNS 644

Query: 727 -LAAQIRNT 734
            L  Q++ +
Sbjct: 645 RLVPQMKGS 653



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 131/448 (29%), Positives = 226/448 (50%), Gaps = 22/448 (4%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSW 111
           M+  Y K G+V+ AR+LF+ M  +N+V+W  M++GY     V EAR LFD M   ++FSW
Sbjct: 129 MLDGYVKAGQVDRARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPYRNVFSW 188

Query: 112 ALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI 171
             M+  Y   G L +ARE+FD +P + +   W  MV  Y   G   EA +L + MP  N 
Sbjct: 189 TTMVQGYAHNGMLREAREMFDKMPER-NVVAWTVMVKAYVDNGCIQEALELFNRMPQMNS 247

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ 231
            SWN+M +G    G++  A + F+ M  ++VVSW +M+ G  +   +  A +FF ++P++
Sbjct: 248 YSWNAMATGLMSAGKVDDAVQLFDKMPHKNVVSWTIMVTGLAQNGFVSRAREFFDRMPKK 307

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
           ++ +W +M++ Y  +G++ +A+RLFD MP +N+V WN +I  Y      +EA RLF+ M 
Sbjct: 308 DIPAWNSMITAYTNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNLKDEALRLFLLM- 366

Query: 292 ERNPVS--WTTMIDGYVRIAKLDEARRL------LDQMPYKNIAAQTAMISGYVQNKRMD 343
            R+ VS   TT+I   V      E R++      L   P  N+     ++S Y ++  + 
Sbjct: 367 LRSAVSPDSTTLISVLVVSESTMEVRQIHGLSTKLGYQPETNLG--NTLVSMYSRSGDLS 424

Query: 344 EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV----NKDIVTWNTMIAGYA 399
            A   F ++   D + W  MI+  A  G    A+  F QM+         T+  +++   
Sbjct: 425 SAWLAFRRLNEKDAITWTSMIQALANHGCAPCALQGFAQMLRCGYKPSSTTFTAVLSACN 484

Query: 400 QIRQMDDAVKIFEEM----GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADH 455
            +  ++   KIF+ +    G       ++ L+    +  +  +A ++   M ++    D 
Sbjct: 485 HVGLVEKGRKIFKSISHVYGLEPTIEHYSCLVDLLGRAGYVREAKEVVDGMQRD--MCDE 542

Query: 456 STLACALSACAHLAALQLGRQIHHLAIK 483
           + L   L +C     +++GR +    +K
Sbjct: 543 AILGTLLGSCMTHNEVEVGRAVGEDLVK 570



 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 174/353 (49%), Gaps = 48/353 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF+    +     +G + EA ++F +M ++N V +  M+ AY  NG + +A +LF +MPQ
Sbjct: 185 VFSWTTMVQGYAHNGMLREAREMFDKMPERNVVAWTVMVKAYVDNGCIQEALELFNRMPQ 244

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
            N  SWN+M  G +   KV +A +LFDKM   ++ SW +M+T   + G + +ARE FD +
Sbjct: 245 MNSYSWNAMATGLMSAGKVDDAVQLFDKMPHKNVVSWTIMVTGLAQNGFVSRAREFFDRM 304

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P K+D   WN+M+  Y   G  N+A++L D MPSKN+V+WN ++ GY+ N     A + F
Sbjct: 305 P-KKDIPAWNSMITAYTNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNLKDEALRLF 363

Query: 195 -----------------------EAMEERDVVSW-------------NLMLDGYVELDDL 218
                                    ME R +                N ++  Y    DL
Sbjct: 364 LLMLRSAVSPDSTTLISVLVVSESTMEVRQIHGLSTKLGYQPETNLGNTLVSMYSRSGDL 423

Query: 219 DSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-----NVVAWNAMIAA 273
            SAW  F+++ E++ ++W +M+   A +G    A + F QM +R     +   + A+++A
Sbjct: 424 SSAWLAFRRLNEKDAITWTSMIQALANHGCAPCALQGFAQM-LRCGYKPSSTTFTAVLSA 482

Query: 274 YVQRGQIEEAARLFIEMP-----ERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
               G +E+  ++F  +      E     ++ ++D   R   + EA+ ++D M
Sbjct: 483 CNHVGLVEKGRKIFKSISHVYGLEPTIEHYSCLVDLLGRAGYVREAKEVVDGM 535


>gi|115476932|ref|NP_001062062.1| Os08g0481000 [Oryza sativa Japonica Group]
 gi|42409025|dbj|BAD10278.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113624031|dbj|BAF23976.1| Os08g0481000 [Oryza sativa Japonica Group]
 gi|215715342|dbj|BAG95093.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222640747|gb|EEE68879.1| hypothetical protein OsJ_27695 [Oryza sativa Japonica Group]
          Length = 563

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/543 (37%), Positives = 322/543 (59%), Gaps = 2/543 (0%)

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARN 246
           MH           R +V  N  +       D+ +A + F  +P ++ VSW  +L+   R 
Sbjct: 1   MHRLRHHAALASSRLLVRDNQRITALARAGDVAAARRVFDAMPRRDAVSWNALLTALWRA 60

Query: 247 GRMLEA-RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGY 305
           GR L A R LFD MP RNV++WN++IA  +  G +  A+  F   P RN  SW  M+ G 
Sbjct: 61  GRDLPAARSLFDDMPSRNVISWNSIIAGCLAHGDLAAASAYFARAPRRNVASWNAMLAGL 120

Query: 306 VRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIK 365
           VR+  +++AR L DQMP +N+ + T M+ G  +   +  A ++FD + T ++V W  MI 
Sbjct: 121 VRLGSMEDARSLFDQMPERNVVSYTTMVDGLARCGEVASARELFDAMPTRNLVSWAAMIS 180

Query: 366 GYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
           GY     ++EA  LF  M  K++V    MI GY +   + +A ++F+ + + ++ +SWNA
Sbjct: 181 GYVDNNMLEEARKLFEAMPEKNVVACTAMITGYCKEGDLQNARRLFDGI-RAKDVISWNA 239

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485
           +ISG++ N    +A K++++M +EG K D +TL   L+AC+ LA L+ GR  H + IK+ 
Sbjct: 240 IISGYVHNGLGEEATKLYIIMLREGIKPDQATLIALLTACSSLALLRQGRSTHAVVIKAM 299

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
             + + + N+L+TMY+KCG +  +EL+F      D++SWN++IA YA +G   + I LF 
Sbjct: 300 LESSISICNALMTMYSKCGNVDESELVFMSLKSQDIVSWNTIIAAYAQHGRYQKVIALFH 359

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRA 605
           EM + G+ P+ +TF+ +LSAC H G VD  LKLF+ M   YAI P  EHYAC++D+LSRA
Sbjct: 360 EMELCGLIPNDITFLSMLSACGHAGRVDESLKLFDLMFSKYAISPRAEHYACIVDILSRA 419

Query: 606 GRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLS 665
           G+L++A   +K M  +    +WGTLL A + H N++LG +A + L   + + +  Y +LS
Sbjct: 420 GQLEKACSYIKEMPSEAEKNVWGTLLCASQTHGNVQLGELAAKMLVLSDFESSGAYVMLS 479

Query: 666 NMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLK 725
           N++A AG W EV +VR  M+  G +KQPG SW E+ +++H F+ GD        I + L+
Sbjct: 480 NIYAAAGMWGEVNRVRSQMKEKGVKKQPGHSWTEIADKVHMFVGGDASHPEMDMILSELR 539

Query: 726 TLA 728
            ++
Sbjct: 540 KIS 542



 Score =  231 bits (590), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 129/387 (33%), Positives = 221/387 (57%), Gaps = 16/387 (4%)

Query: 42  SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDK-VKEARELF 100
           S +  V  N  I+A A+ G V  AR++F+ MP+R+ VSWN+++       + +  AR LF
Sbjct: 12  SSRLLVRDNQRITALARAGDVAAARRVFDAMPRRDAVSWNALLTALWRAGRDLPAARSLF 71

Query: 101 DKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
           D M   ++ SW  +I      G+L  A   F   P + + A WNAM+AG  ++G+  +A+
Sbjct: 72  DDMPSRNVISWNSIIAGCLAHGDLAAASAYFARAP-RRNVASWNAMLAGLVRLGSMEDAR 130

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
            L D MP +N+VS+ +M+ G  + GE+  A + F+AM  R++VSW  M+ GYV+ + L+ 
Sbjct: 131 SLFDQMPERNVVSYTTMVDGLARCGEVASARELFDAMPTRNLVSWAAMISGYVDNNMLEE 190

Query: 221 AWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQI 280
           A K F+ +PE+NVV+   M++GY + G +  ARRLFD +  ++V++WNA+I+ YV  G  
Sbjct: 191 ARKLFEAMPEKNVVACTAMITGYCKEGDLQNARRLFDGIRAKDVISWNAIISGYVHNGLG 250

Query: 281 EEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARR----LLDQMPYKNIAAQTAM 332
           EEA +L+I M       +  +   ++     +A L + R     ++  M   +I+   A+
Sbjct: 251 EEATKLYIIMLREGIKPDQATLIALLTACSSLALLRQGRSTHAVVIKAMLESSISICNAL 310

Query: 333 ISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-----VNKD 387
           ++ Y +   +DE+  +F  + + D+V WN +I  YAQ GR  + I LF +M     +  D
Sbjct: 311 MTMYSKCGNVDESELVFMSLKSQDIVSWNTIIAAYAQHGRYQKVIALFHEMELCGLIPND 370

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           I T+ +M++      ++D+++K+F+ M
Sbjct: 371 I-TFLSMLSACGHAGRVDESLKLFDLM 396



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 124/433 (28%), Positives = 228/433 (52%), Gaps = 23/433 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGR-VNDARKLFEQMP 73
           +   N++IT L ++G V  A ++F  M +++ V++N++++A  + GR +  AR LF+ MP
Sbjct: 16  LVRDNQRITALARAGDVAAARRVFDAMPRRDAVSWNALLTALWRAGRDLPAARSLFDDMP 75

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDL 133
            RN++SWNS+IAG L +  +  A   F +  R ++ SW  M+    R G +E AR LFD 
Sbjct: 76  SRNVISWNSIIAGCLAHGDLAAASAYFARAPRRNVASWNAMLAGLVRLGSMEDARSLFDQ 135

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
           +P + +   +  MV G A+ G    A++L DAMP++N+VSW +M+SGY  N  +  A K 
Sbjct: 136 MPER-NVVSYTTMVDGLARCGEVASARELFDAMPTRNLVSWAAMISGYVDNNMLEEARKL 194

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEAR 253
           FEAM E++VV+   M+ GY +  DL +A + F  I  ++V+SW  ++SGY  NG   EA 
Sbjct: 195 FEAMPEKNVVACTAMITGYCKEGDLQNARRLFDGIRAKDVISWNAIISGYVHNGLGEEAT 254

Query: 254 RLF----------DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMID 303
           +L+          DQ  +  ++   + + A +++G+   A  +   M E +      ++ 
Sbjct: 255 KLYIIMLREGIKPDQATLIALLTACSSL-ALLRQGRSTHAV-VIKAMLESSISICNALMT 312

Query: 304 GYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNV- 362
            Y +   +DE+  +   +  ++I +   +I+ Y Q+ R  +   +F ++    ++  ++ 
Sbjct: 313 MYSKCGNVDESELVFMSLKSQDIVSWNTIIAAYAQHGRYQKVIALFHEMELCGLIPNDIT 372

Query: 363 ---MIKGYAQCGRMDEAINLFRQMVNKDIVT-----WNTMIAGYAQIRQMDDAVKIFEEM 414
              M+      GR+DE++ LF  M +K  ++     +  ++   ++  Q++ A    +EM
Sbjct: 373 FLSMLSACGHAGRVDESLKLFDLMFSKYAISPRAEHYACIVDILSRAGQLEKACSYIKEM 432

Query: 415 GKRRNTVSWNALI 427
                   W  L+
Sbjct: 433 PSEAEKNVWGTLL 445



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 90/187 (48%), Gaps = 19/187 (10%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +T   K G V+E+  +F  +  ++ V++N++I+AYA++GR      LF +M    L+
Sbjct: 308 NALMTMYSKCGNVDESELVFMSLKSQDIVSWNTIIAAYAQHGRYQKVIALFHEMELCGLI 367

Query: 79  ----SWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARE 129
               ++ SM++   H  +V E+ +LFD MF      P    +A ++   +R G+LEKA  
Sbjct: 368 PNDITFLSMLSACGHAGRVDESLKLFDLMFSKYAISPRAEHYACIVDILSRAGQLEKACS 427

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
               +P++ +   W  ++      GN       L  + +K +V     LS +  +G   +
Sbjct: 428 YIKEMPSEAEKNVWGTLLCASQTHGNVQ-----LGELAAKMLV-----LSDFESSGAYVM 477

Query: 190 ASKFFEA 196
            S  + A
Sbjct: 478 LSNIYAA 484


>gi|296090396|emb|CBI40215.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/538 (41%), Positives = 331/538 (61%), Gaps = 21/538 (3%)

Query: 120 RKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLS 179
           R G +E+AR +F+ +  + D   WN+M+ GY++ G  +EA+ L DA   KNI +W  +L+
Sbjct: 51  RLGRVEEARRVFNEMIQR-DVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLT 109

Query: 180 GYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTM 239
           GY K G +  A + FE+M ER+VVSWN M+ GYV+  DL +A K F ++PE+NV SW ++
Sbjct: 110 GYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSV 169

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE-RNPVSW 298
           ++GY    RM EAR LFDQMP RN V+W  MI+ YV      EA  +F++M   RN  SW
Sbjct: 170 VTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTRNEYSW 229

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV 357
           TTMI  + +  +LD+A +L +++P + N A+  AMI+G+VQN+   EA ++  ++     
Sbjct: 230 TTMIAAFAQCGRLDDAIQLYERVPEQTNSASWAAMIAGFVQNEESREALELLIELHRSGS 289

Query: 358 V------------CWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMD 405
           V            C N+   G  + GR+  ++ + +     +    N +I+ YA+   ++
Sbjct: 290 VPSDSSFTSALSACANI---GDVEIGRVIHSLAI-KTGCQFNSYVMNGLISMYAKCGNVE 345

Query: 406 DAVKIFEEMG-KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSA 464
           D   +F  +   +R+ VSW A+IS ++Q      AL +F+ M   G K +  T+   LSA
Sbjct: 346 DGSHVFRTIRMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSA 405

Query: 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
           C +L A++LG Q H L  K G+   LFVGNSLITMY KCG  ++   +F++    D+I+W
Sbjct: 406 CGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEHDLITW 464

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           N+++ G A NG   EAIK+FE+M +EG+ PD ++F+GVL ACSH GLVD G   F  MT+
Sbjct: 465 NAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQ 524

Query: 585 VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKL 642
            Y I PLV HY CM+DLL RAG L EA  +++ M +KP++ IW  LLGACR+H+N +L
Sbjct: 525 KYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNNEL 582



 Score =  278 bits (711), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 148/413 (35%), Positives = 231/413 (55%), Gaps = 36/413 (8%)

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
           P  ++   N+ +    + G +  A + F  M +RDVVSWN M++GY +   +D A   F 
Sbjct: 35  PQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFD 94

Query: 227 KIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
               +N+ +W  +L+GYA+ GR+ EAR +F+ M  RNVV+WNAMI+ YVQ G ++ A +L
Sbjct: 95  AFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKL 154

Query: 287 FIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEAN 346
           F EMPE+N  SW +++ GY    ++ EAR L DQMP +N  +   MISGYV      EA 
Sbjct: 155 FDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAW 214

Query: 347 QIFDKIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK-DIVTWNTMIAGYAQIRQM 404
            +F K+  T +   W  MI  +AQCGR+D+AI L+ ++  + +  +W  MIAG       
Sbjct: 215 DVFVKMCRTRNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTNSASWAAMIAG------- 267

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSA 464
                                    F+QNE   +AL++ + + + G     S+   ALSA
Sbjct: 268 -------------------------FVQNEESREALELLIELHRSGSVPSDSSFTSALSA 302

Query: 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD--ADPVDVI 522
           CA++  +++GR IH LAIK+G   + +V N LI+MYAKCG +++   +F+       DV+
Sbjct: 303 CANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRMPKRDVV 362

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
           SW ++I+ Y   G+   A+ LF +M+  G+ P+ +T   +LSAC ++G +  G
Sbjct: 363 SWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLG 415



 Score =  244 bits (623), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 161/578 (27%), Positives = 277/578 (47%), Gaps = 89/578 (15%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           +++F  N +I +LG+ GRVEEA ++F++M Q++ V++NSMI+ Y++NG+V++AR LF+  
Sbjct: 37  THLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAF 96

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD 132
             +N+ +W  ++ GY    +++EARE+F+ M   ++ SW  MI+ Y + G+L+ AR+LFD
Sbjct: 97  VGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFD 156

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
            +P K + A WN++V GY      +EA++L D MP +N VSW  M+SGY    +   A  
Sbjct: 157 EMPEK-NVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWD 215

Query: 193 FFEAM-EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ-NVVSWVTMLSGYARNGRML 250
            F  M   R+  SW  M+  + +   LD A + ++++PEQ N  SW  M++G+ +N    
Sbjct: 216 VFVKMCRTRNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTNSASWAAMIAGFVQNEESR 275

Query: 251 EAR----------------------------------RLFDQMPIR-----NVVAWNAMI 271
           EA                                   R+   + I+     N    N +I
Sbjct: 276 EALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLI 335

Query: 272 AAYVQRGQIEEAARLF--IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
           + Y + G +E+ + +F  I MP+R+ VSWT +I  YV+    + A  L   M  + I   
Sbjct: 336 SMYAKCGNVEDGSHVFRTIRMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPN 395

Query: 330 TAMISGYVQN-------KRMDEANQIFDKIGTHD-VVCWNVMIKGYAQCGRMDEAINLFR 381
              ++  +         K  ++ + +  K+G    +   N +I  Y +CG  D    +F 
Sbjct: 396 QLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYED-GFCVFE 454

Query: 382 QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALK 441
           +M   D++TWN ++ G AQ     +A+KIFE+                            
Sbjct: 455 EMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQ---------------------------- 486

Query: 442 IFVLMTQEGKKADHSTLACALSACAHLAALQLG-RQIHHLAIKSGYVNDLFVGNSLITMY 500
               M  EG   D  +    L AC+H   +  G    + +  K G +  ++    ++ + 
Sbjct: 487 ----MEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLL 542

Query: 501 AKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGN 536
            + G +  AE L ++  PV  D + W +L+    I+ N
Sbjct: 543 GRAGYLSEAEALIENM-PVKPDSVIWEALLGACRIHRN 579


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/569 (37%), Positives = 333/569 (58%), Gaps = 40/569 (7%)

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR 262
           +S+   L  +++   LD A   F KIP  N+  +  M++GY RN R+ +A +LFD+M +R
Sbjct: 13  LSYTTSLANHLKNQRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVR 72

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
           +VV+WN+MI   +  G +  A RLF EMPE+N +SWTTM++GY++  +++ A+RL   M 
Sbjct: 73  DVVSWNSMIKGCLDCGNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLFLDMH 132

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
            K++AA  AM+ GY +N R++E  ++F+++   DV+ W  MI G    G+ +EA+ +F++
Sbjct: 133 VKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKK 192

Query: 383 MVNKDI-VTWNT--------------------------------------MIAGYAQIRQ 403
           M+   +  TW+T                                      +I  YA   +
Sbjct: 193 MLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMK 252

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS 463
           ++ A KIF E    +N V W AL++ ++ N  H DAL++F  MT+ G   + ST +  L 
Sbjct: 253 IEHAHKIFNET-LTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLK 311

Query: 464 ACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
           AC  L AL  G++IH +AIK G   D+FVGNSL+ MY +CG + +A  +F++ +  D++S
Sbjct: 312 ACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVS 371

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMT 583
           WNS+I G A +G    A+  F +M+  GV P+ +TF G+LSACS  G++  G   FE ++
Sbjct: 372 WNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLLKGRCFFEYIS 431

Query: 584 EVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLG 643
              +     +HYACM+D+L R G+LDEA E+V+ M +K N+ IW  LL ACR+H N+++ 
Sbjct: 432 RYKSNVLRPQHYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSACRVHSNLEVA 491

Query: 644 RIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQ 703
             A + + +LEP  +S Y LLSN++A AGRW +V ++RV M+  G  KQPG SW+ ++ +
Sbjct: 492 ERAAKHILDLEPNCSSAYVLLSNIYASAGRWADVSRMRVKMKQGGLVKQPGSSWVVLRGK 551

Query: 704 IHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            H FLS D     +  I   L  L  +++
Sbjct: 552 KHEFLSADRSHPLSERIYEKLDWLGKKLK 580



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 139/511 (27%), Positives = 230/511 (45%), Gaps = 88/511 (17%)

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
           +S+ + +A +L N ++ +AR +FDK+  P+L  +  MI  YTR   L  A +LFD +  +
Sbjct: 13  LSYTTSLANHLKNQRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVR 72

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            D   WN+M+ G    GN   A +L D MP KN++SW +M++GY K G + LA + F  M
Sbjct: 73  -DVVSWNSMIKGCLDCGNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLFLDM 131

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFD 257
             +DV +WN M+ GY E   ++   + F+++P ++V+SW +M+ G   NG+  EA  +F 
Sbjct: 132 HVKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFK 191

Query: 258 QM-----------------PIRNVVAWN----------------------AMIAAYVQRG 278
           +M                    N V +N                      ++I  Y    
Sbjct: 192 KMLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCM 251

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP----YKNIAAQTAMIS 334
           +IE A ++F E   +N V WT ++  YV   K  +A R+   M       N +  +  + 
Sbjct: 252 KIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLK 311

Query: 335 GYVQNKRMDEANQIFD---KIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
                + +D+  +I     K+G   DV   N ++  Y +CG ++ A+ +FR +  KDIV+
Sbjct: 312 ACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVS 371

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
           WN++I G A                                Q+ F L AL  F  M + G
Sbjct: 372 WNSIIVGSA--------------------------------QHGFGLWALIFFNQMIRRG 399

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN---SLITMYAKCGRIQ 507
              +  T    LSAC+    L  GR        S Y +++        ++ +  +CG++ 
Sbjct: 400 VDPNEITFTGLLSACSRSGMLLKGRCF--FEYISRYKSNVLRPQHYACMVDILGRCGKLD 457

Query: 508 NAELLFKDADPVDVIS--WNSLIAGYAINGN 536
            AE L +   PV   S  W +L++   ++ N
Sbjct: 458 EAEELVRYM-PVKANSMIWLALLSACRVHSN 487



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 172/397 (43%), Gaps = 88/397 (22%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  I      G +  A ++F +M +KN +++ +M++ Y K GRV  A++LF  M  
Sbjct: 74  VVSWNSMIKGCLDCGNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLFLDMHV 133

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD-- 132
           +++ +WN+M+ GY  N +V+E   LF++M   D+ SW  MI      G+ E+A  +F   
Sbjct: 134 KDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKM 193

Query: 133 LLPNKEDT---------ACWNA---------------------------MVAGYAKIGNY 156
           L    E T         AC NA                           ++  YA     
Sbjct: 194 LRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKI 253

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGY----------------TKNGEMHLASKF------- 193
             A K+ +   +KN+V W ++L+ Y                TK G +   S F       
Sbjct: 254 EHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKAC 313

Query: 194 --FEAME--------------ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV 237
              EA++              E DV   N ++  Y E  +++SA   F+ I E+++VSW 
Sbjct: 314 CGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWN 373

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           +++ G A++G  L A   F+QM  R V    + +  +++A  + G + +  R F E   R
Sbjct: 374 SIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLLK-GRCFFEYISR 432

Query: 294 ------NPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
                  P  +  M+D   R  KLDEA  L+  MP K
Sbjct: 433 YKSNVLRPQHYACMVDILGRCGKLDEAEELVRYMPVK 469



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 17/169 (10%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  N  +    + G V  A+ +F  +++K+ V++NS+I   A++G    A   F QM +
Sbjct: 338 VFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIR 397

Query: 75  R----NLVSWNSMIAGYLHNDKVKEARELFD-------KMFRPDLFSWALMITCYTRKGE 123
           R    N +++  +++    +  + + R  F+        + RP    +A M+    R G+
Sbjct: 398 RGVDPNEITFTGLLSACSRSGMLLKGRCFFEYISRYKSNVLRPQ--HYACMVDILGRCGK 455

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNY----NEAKKLLDAMPS 168
           L++A EL   +P K ++  W A+++      N       AK +LD  P+
Sbjct: 456 LDEAEELVRYMPVKANSMIWLALLSACRVHSNLEVAERAAKHILDLEPN 504


>gi|115461705|ref|NP_001054452.1| Os05g0112900 [Oryza sativa Japonica Group]
 gi|45680436|gb|AAS75237.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578003|dbj|BAF16366.1| Os05g0112900 [Oryza sativa Japonica Group]
 gi|215715346|dbj|BAG95097.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215736909|dbj|BAG95838.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222629956|gb|EEE62088.1| hypothetical protein OsJ_16872 [Oryza sativa Japonica Group]
          Length = 661

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/609 (36%), Positives = 336/609 (55%), Gaps = 39/609 (6%)

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS--KNIVSWNSMLSGYTKNGEM 187
           +FD +P ++D   + AMV  +    +   A+ L  A P   + I     ML GY K G++
Sbjct: 80  MFDGMPRRDDAVAYAAMVGIHLWDRDLPHAEALYRAAPPDCRGIHLDTVMLDGYVKAGQV 139

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
             A + F+ M  ++VV+W  M+ GY     +D A + F  +P +NV SW TM+ GYA NG
Sbjct: 140 DRARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPYRNVFSWTTMVQGYAHNG 199

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVR 307
            + EAR +FD+MP RNVVAW  M+ AYV  G I+EA  LF  MP+ N  SW  M  G + 
Sbjct: 200 MLREAREMFDKMPERNVVAWTVMVKAYVDNGCIQEALELFNRMPQMNSYSWNAMATGLMS 259

Query: 308 IAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367
             K+D+A +L D+MP+KN+ + T M++G  QN  +  A + FD++   D+  WN MI  Y
Sbjct: 260 AGKVDDAVQLFDKMPHKNVVSWTIMVTGLAQNGFVSRAREFFDRMPKKDIPAWNSMITAY 319

Query: 368 AQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
              G++++A  LF  M +K++VTWN +I GY+                            
Sbjct: 320 TNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYS---------------------------- 351

Query: 428 SGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV 487
                N    +AL++F+LM +     D +TL   L        +   RQIH L+ K GY 
Sbjct: 352 ----MNNLKDEALRLFLLMLRSAVSPDSTTLISVLVVSESTMEV---RQIHGLSTKLGYQ 404

Query: 488 NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
            +  +GN+L++MY++ G + +A L F+  +  D I+W S+I   A +G A  A++ F +M
Sbjct: 405 PETNLGNTLVSMYSRSGDLSSAWLAFRRLNEKDAITWTSMIQALANHGCAPCALQGFAQM 464

Query: 548 VMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGR 607
           +  G  P   TF  VLSAC+HVGLV+ G K+F+ ++ VY + P +EHY+C++DLL RAG 
Sbjct: 465 LRCGYKPSSTTFTAVLSACNHVGLVEKGRKIFKSISHVYGLGPTIEHYSCLVDLLGRAGY 524

Query: 608 LDEAFEMVKGMKIK-PNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSN 666
           + EA E+V GM+    +  I GTLLG+C  H  +++GR   E L +++P  +  Y LL+N
Sbjct: 525 VREAKEVVDGMQRDMCDEAILGTLLGSCMTHNEVEVGRAVGEDLVKIDPSGSGGYTLLAN 584

Query: 667 MHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKT 726
           + A  G W+EV  V   M+GS  +K PG S IEV  + H F S D    +  EI   L +
Sbjct: 585 VFASGGMWNEVASVWKIMKGSKVKKTPGFSQIEVNARNHVFYSRDQMHSQRTEIYEMLNS 644

Query: 727 -LAAQIRNT 734
            L  Q++ +
Sbjct: 645 RLVPQMKGS 653



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 131/430 (30%), Positives = 206/430 (47%), Gaps = 67/430 (15%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSW 111
           M+  Y K G+V+ AR+LF+ M  +N+V+W  M++GY     V EAR LFD M   ++FSW
Sbjct: 129 MLDGYVKAGQVDRARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPYRNVFSW 188

Query: 112 ALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI 171
             M+  Y   G L +ARE+FD +P + +   W  MV  Y   G   EA +L + MP  N 
Sbjct: 189 TTMVQGYAHNGMLREAREMFDKMPER-NVVAWTVMVKAYVDNGCIQEALELFNRMPQMNS 247

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ 231
            SWN+M +G    G++  A + F+ M  ++VVSW +M+ G  +   +  A +FF ++P++
Sbjct: 248 YSWNAMATGLMSAGKVDDAVQLFDKMPHKNVVSWTIMVTGLAQNGFVSRAREFFDRMPKK 307

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
           ++ +W +M++ Y  +G++ +A+RLFD MP +N+V WN +I  Y      +EA RLF+ M 
Sbjct: 308 DIPAWNSMITAYTNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNLKDEALRLFLLM- 366

Query: 292 ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF-- 349
            R+ VS                                T +IS  V ++   E  QI   
Sbjct: 367 LRSAVS-----------------------------PDSTTLISVLVVSESTMEVRQIHGL 397

Query: 350 -DKIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDA 407
             K+G   +    N ++  Y++ G +  A   FR++  KD +TW +MI   A        
Sbjct: 398 STKLGYQPETNLGNTLVSMYSRSGDLSSAWLAFRRLNEKDAITWTSMIQALA-------- 449

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
                      N       + GF Q             M + G K   +T    LSAC H
Sbjct: 450 -----------NHGCAPCALQGFAQ-------------MLRCGYKPSSTTFTAVLSACNH 485

Query: 468 LAALQLGRQI 477
           +  ++ GR+I
Sbjct: 486 VGLVEKGRKI 495



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 130/467 (27%), Positives = 236/467 (50%), Gaps = 41/467 (8%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K+G+V+ A ++F  M+ KN V +  M+S Y + G V++AR+LF+ MP RN+ SW +M+ G
Sbjct: 135 KAGQVDRARRLFDGMAVKNVVAWTCMVSGYCRAGLVDEARRLFDLMPYRNVFSWTTMVQG 194

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
           Y HN  ++EARE+FDKM   ++ +W +M+  Y   G +++A ELF+ +P + ++  WNAM
Sbjct: 195 YAHNGMLREAREMFDKMPERNVVAWTVMVKAYVDNGCIQEALELFNRMP-QMNSYSWNAM 253

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN 206
             G    G  ++A +L D MP KN+VSW  M++G  +NG +  A +FF+ M ++D+ +WN
Sbjct: 254 ATGLMSAGKVDDAVQLFDKMPHKNVVSWTIMVTGLAQNGFVSRAREFFDRMPKKDIPAWN 313

Query: 207 LMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA 266
            M+  Y     ++ A + F  +P +N+V+W  ++ GY+ N    EA RLF  M +R+ V+
Sbjct: 314 SMITAYTNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNLKDEALRLFLLM-LRSAVS 372

Query: 267 WNA--MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
            ++  +I+  V                    VS +TM      + ++      L   P  
Sbjct: 373 PDSTTLISVLV--------------------VSESTM-----EVRQIHGLSTKLGYQPET 407

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
           N+     ++S Y ++  +  A   F ++   D + W  MI+  A  G    A+  F QM+
Sbjct: 408 NLG--NTLVSMYSRSGDLSSAWLAFRRLNEKDAITWTSMIQALANHGCAPCALQGFAQML 465

Query: 385 ----NKDIVTWNTMIAGYAQIRQMDDAVKIFEEM----GKRRNTVSWNALISGFLQNEFH 436
                    T+  +++    +  ++   KIF+ +    G       ++ L+    +  + 
Sbjct: 466 RCGYKPSSTTFTAVLSACNHVGLVEKGRKIFKSISHVYGLGPTIEHYSCLVDLLGRAGYV 525

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
            +A ++   M ++    D + L   L +C     +++GR +    +K
Sbjct: 526 REAKEVVDGMQRD--MCDEAILGTLLGSCMTHNEVEVGRAVGEDLVK 570



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 174/353 (49%), Gaps = 48/353 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF+    +     +G + EA ++F +M ++N V +  M+ AY  NG + +A +LF +MPQ
Sbjct: 185 VFSWTTMVQGYAHNGMLREAREMFDKMPERNVVAWTVMVKAYVDNGCIQEALELFNRMPQ 244

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
            N  SWN+M  G +   KV +A +LFDKM   ++ SW +M+T   + G + +ARE FD +
Sbjct: 245 MNSYSWNAMATGLMSAGKVDDAVQLFDKMPHKNVVSWTIMVTGLAQNGFVSRAREFFDRM 304

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P K+D   WN+M+  Y   G  N+A++L D MPSKN+V+WN ++ GY+ N     A + F
Sbjct: 305 P-KKDIPAWNSMITAYTNDGQVNDAQRLFDIMPSKNLVTWNIIIDGYSMNNLKDEALRLF 363

Query: 195 -----------------------EAMEERDVVSW-------------NLMLDGYVELDDL 218
                                    ME R +                N ++  Y    DL
Sbjct: 364 LLMLRSAVSPDSTTLISVLVVSESTMEVRQIHGLSTKLGYQPETNLGNTLVSMYSRSGDL 423

Query: 219 DSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-----NVVAWNAMIAA 273
            SAW  F+++ E++ ++W +M+   A +G    A + F QM +R     +   + A+++A
Sbjct: 424 SSAWLAFRRLNEKDAITWTSMIQALANHGCAPCALQGFAQM-LRCGYKPSSTTFTAVLSA 482

Query: 274 YVQRGQIEEAARLFIEMPE---RNPV--SWTTMIDGYVRIAKLDEARRLLDQM 321
               G +E+  ++F  +       P    ++ ++D   R   + EA+ ++D M
Sbjct: 483 CNHVGLVEKGRKIFKSISHVYGLGPTIEHYSCLVDLLGRAGYVREAKEVVDGM 535


>gi|224118338|ref|XP_002317794.1| predicted protein [Populus trichocarpa]
 gi|222858467|gb|EEE96014.1| predicted protein [Populus trichocarpa]
          Length = 852

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 247/750 (32%), Positives = 405/750 (54%), Gaps = 70/750 (9%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPD 107
           ++  YA+ G + DA  LFE MP RNL SW ++++ YL +   +EA  LF  +       D
Sbjct: 100 LLQMYARCGLLKDADFLFETMPMRNLHSWKAILSVYLDHGLFEEAFLLFQVLQFDGVELD 159

Query: 108 LFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLD 164
            F + L+    +  G +E  R+L  L+       +    NA++  Y K G+ ++AKK+L 
Sbjct: 160 FFVFPLVFKACSGLGSVELGRQLHGLVIKFRFCLNIYVSNALIDMYGKCGSLDDAKKVLV 219

Query: 165 AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD-----VVSWNLMLDGYVELDDLD 219
            MP ++ V+WNS+++    NG ++ A +F E M+  D     VVSW+ ++ G+ +    +
Sbjct: 220 KMPERDSVTWNSVITACAANGMVYEALEFLEKMKSLDYSMPNVVSWSAVIGGFAQNGYDE 279

Query: 220 SAWKFFQKIPEQNVVSWVTMLSGY----ARNGRMLEARRLFDQMP----IRNVVAWNAMI 271
            A +   ++  + +V     L+G     AR  R+   ++L   +     I N V  NA++
Sbjct: 280 EAIEMLFRMQVEGLVPNAQTLAGVLPACARLQRLDLGKQLHGYITRHDFISNPVVVNALV 339

Query: 272 AAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY----KNIA 327
             Y + G +  AA++F++   +N +S  TMI GY     + +A+ L D M      + + 
Sbjct: 340 DVYRRCGDMGGAAKIFLKFSVKNVLSCNTMIVGYCESGDVSKAKELFDCMDVLGIERGLI 399

Query: 328 AQTAMISGYVQNKRMDEANQIFDK-------------IGTHDVVCWNVM----------- 363
           +  ++ISGYV+N   DEA  +F               +G+    C + +           
Sbjct: 400 SWNSIISGYVRNFMFDEAFSMFQNMLMEEGIEPDSFTLGSVLTACADTISLRQGKEIHAQ 459

Query: 364 --IKG--------------YAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDA 407
             +KG              Y++C  +  A   F +++ KD+ TWN +I+GY +  Q++  
Sbjct: 460 AIVKGLQSDTFVGGALVEMYSKCQDLTAAQVAFDEVMEKDVPTWNALISGYTRSNQIERI 519

Query: 408 VKIFEEM---GKRRNTVSWNALISGFLQNEFHLD-ALKIFVLMTQEGKKADHSTLACALS 463
             + E+M   G   N  +WN++++G ++N   LD  +++F  M     + D  T+   L 
Sbjct: 520 QYLLEKMKGDGYHPNIYTWNSILAGLVENR-QLDLTMQLFSEMQISKLRPDIYTVGIILP 578

Query: 464 ACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
           AC+ LA L+ G+Q H  +IK GY  D+ +G +L+ MYAKCG ++ A+L +      +++S
Sbjct: 579 ACSRLATLERGKQAHAHSIKCGYDTDVHIGAALVDMYAKCGSLKYAQLAYDRISNPNLVS 638

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMT 583
            N+++   A++G+  E I LF+ M+  G  PD VTF+ VLS+C HVG V+ G + F+ M 
Sbjct: 639 HNAMLTACAMHGHGEEGISLFQTMLALGFIPDHVTFLSVLSSCVHVGSVETGCEFFDLMG 698

Query: 584 EVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLG 643
             Y ++P ++HY  M+DLLSR+G+L EA+E++K M ++ ++ +WG LLG C  H NI+LG
Sbjct: 699 -YYNVKPTLKHYTSMVDLLSRSGQLHEAYELIKKMPVECDSVLWGALLGGCVTHGNIELG 757

Query: 644 RIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQ 703
            IA E+L ELEP  +  Y LL+N+HA A RW ++ +VR  M+  G  K PGCSWIE KN+
Sbjct: 758 EIAAERLIELEPNNSGNYVLLANLHAYARRWTDLARVRGMMKDRGMHKSPGCSWIEDKNE 817

Query: 704 IHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           IH+FL+ D    R  EI  TL  LA  ++ 
Sbjct: 818 IHSFLACDRSHKRAEEIYATLDYLALHMKT 847



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 134/564 (23%), Positives = 270/564 (47%), Gaps = 47/564 (8%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           ++  N  I   GK G +++A K+  +M ++++VT+NS+I+A A NG V +A +  E+M  
Sbjct: 195 IYVSNALIDMYGKCGSLDDAKKVLVKMPERDSVTWNSVITACAANGMVYEALEFLEKMKS 254

Query: 75  -----RNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELE 125
                 N+VSW+++I G+  N   +EA E+  +M      P+  + A ++    R   L+
Sbjct: 255 LDYSMPNVVSWSAVIGGFAQNGYDEEAIEMLFRMQVEGLVPNAQTLAGVLPACARLQRLD 314

Query: 126 KARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYT 182
             ++L   +   +   +    NA+V  Y + G+   A K+      KN++S N+M+ GY 
Sbjct: 315 LGKQLHGYITRHDFISNPVVVNALVDVYRRCGDMGGAAKIFLKFSVKNVLSCNTMIVGYC 374

Query: 183 KNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKI-----PEQNV 233
           ++G++  A + F+ M+    ER ++SWN ++ GYV     D A+  FQ +      E + 
Sbjct: 375 ESGDVSKAKELFDCMDVLGIERGLISWNSIISGYVRNFMFDEAFSMFQNMLMEEGIEPDS 434

Query: 234 VSWVTMLSGYA-----RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFI 288
            +  ++L+  A     R G+ + A+ +   +     V   A++  Y +   +  A   F 
Sbjct: 435 FTLGSVLTACADTISLRQGKEIHAQAIVKGLQSDTFVG-GALVEMYSKCQDLTAAQVAFD 493

Query: 289 EMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP----YKNIAAQTAMISGYVQNKRMDE 344
           E+ E++  +W  +I GY R  +++  + LL++M     + NI    ++++G V+N+++D 
Sbjct: 494 EVMEKDVPTWNALISGYTRSNQIERIQYLLEKMKGDGYHPNIYTWNSILAGLVENRQLDL 553

Query: 345 ANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMV----NKDIVTWNTMIA 396
             Q+F ++       D+    +++   ++   ++         +    + D+     ++ 
Sbjct: 554 TMQLFSEMQISKLRPDIYTVGIILPACSRLATLERGKQAHAHSIKCGYDTDVHIGAALVD 613

Query: 397 GYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHS 456
            YA+   +  A   ++ +    N VS NA+++    +    + + +F  M   G   DH 
Sbjct: 614 MYAKCGSLKYAQLAYDRI-SNPNLVSHNAMLTACAMHGHGEEGISLFQTMLALGFIPDHV 672

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKSGYVN---DLFVGNSLITMYAKCGRIQNA-ELL 512
           T    LS+C H+ +++ G +   L    GY N    L    S++ + ++ G++  A EL+
Sbjct: 673 TFLSVLSSCVHVGSVETGCEFFDLM---GYYNVKPTLKHYTSMVDLLSRSGQLHEAYELI 729

Query: 513 FKDADPVDVISWNSLIAGYAINGN 536
            K     D + W +L+ G   +GN
Sbjct: 730 KKMPVECDSVLWGALLGGCVTHGN 753



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 136/275 (49%), Gaps = 20/275 (7%)

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
           + K  + S  A  L +C      +LG+Q+H   IK+G+  D F+   L+ MYA+CG +++
Sbjct: 56  DNKPLNTSKYASVLDSCK---CPKLGKQVHAHTIKTGFDADGFIDTKLLQMYARCGLLKD 112

Query: 509 AELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
           A+ LF+     ++ SW ++++ Y  +G   EA  LF+ +  +GV  D   F  V  ACS 
Sbjct: 113 ADFLFETMPMRNLHSWKAILSVYLDHGLFEEAFLLFQVLQFDGVELDFFVFPLVFKACSG 172

Query: 569 VGLVDGGLKLFECMTEV-YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIW 627
           +G V+ G +L   + +  + +   V +   +ID+  + G LD+A +++  M  + ++  W
Sbjct: 173 LGSVELGRQLHGLVIKFRFCLNIYVSN--ALIDMYGKCGSLDDAKKVLVKMPER-DSVTW 229

Query: 628 GTLLGACRMHQNIKLGRIAVEKLSELE---PQKTSCYALLSNMHAEAGRWDEVEKV-RVS 683
            +++ AC  +  +      +EK+  L+   P   S  A++          + +E + R+ 
Sbjct: 230 NSVITACAANGMVYEALEFLEKMKSLDYSMPNVVSWSAVIGGFAQNGYDEEAIEMLFRMQ 289

Query: 684 MEGSGAQKQ------PGCSWIE---VKNQIHTFLS 709
           +EG     Q      P C+ ++   +  Q+H +++
Sbjct: 290 VEGLVPNAQTLAGVLPACARLQRLDLGKQLHGYIT 324


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 236/748 (31%), Positives = 408/748 (54%), Gaps = 31/748 (4%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIF-SQMSQKNTVTYNSMISAYAKNGRVNDARKLFE 70
            S VF QN  +      G + +A ++  + ++  N +T+N M++ Y K GR++DA +LF 
Sbjct: 36  ASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGRLSDAVELFG 95

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELE 125
           +MP R++ SWN++++GY  + +   + E F  M R     P+ F++A  +      GE  
Sbjct: 96  RMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERS 155

Query: 126 KARELFDLLP---NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYT 182
            A +L  ++    +++D+    A+V  + + G  + A +L   +    I   NSML GY 
Sbjct: 156 LALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYV 215

Query: 183 KNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVT 238
           K   +  A + F++M ERDVVSWN+M+    +   +  A      +  + V     ++ +
Sbjct: 216 KTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTS 275

Query: 239 MLSGYARNGRMLEARRLFDQ----MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
            L+  AR   +   ++L  Q    +P  +    +A++  Y + G  +EA  +F  + +RN
Sbjct: 276 SLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRN 335

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA----AQTAMISGYVQNKRMD-----EA 345
            V+WT +I G+++     E+  L +QM  + +     A   +ISG     RMD     + 
Sbjct: 336 NVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCS--RMDLCLGRQL 393

Query: 346 NQIFDKIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQM 404
           + +  K G    VV  N +I  YA+C  +  A ++FR M  KDIV+W +MI  ++Q+  +
Sbjct: 394 HSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNI 453

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF-VLMTQEGKKADHSTLACALS 463
             A + F+ M  + N ++WNA++  ++Q+    D L+++ V+++++  + D  T      
Sbjct: 454 AKAREFFDGMSTK-NVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFK 512

Query: 464 ACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
            CA L A +LG QI    +K G + D  V N++ITMY+KCGRI  A  +F   +  D++S
Sbjct: 513 GCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVS 572

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMT 583
           WN++I GY+ +G   +AI++F++++  G  PD ++++ VLS CSH GLV  G   F+ M 
Sbjct: 573 WNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMK 632

Query: 584 EVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLG 643
            V+ I P +EH++CM+DLL RAG L EA +++  M +KP A +WG LL AC++H N +L 
Sbjct: 633 RVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNELA 692

Query: 644 RIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQ 703
            +A + + EL+   +  Y L++ ++A+AG+ D+  ++R  M   G +K PG SW+EV N+
Sbjct: 693 ELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVNNK 752

Query: 704 IHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           +H F + D    +   I   L  L  +I
Sbjct: 753 VHVFKADDVSHPQVIAIRKKLDELMEKI 780



 Score = 47.0 bits (110), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 76/187 (40%), Gaps = 34/187 (18%)

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA-ELLFKDA 516
            A AL +C    AL   R +H   +  G  + +F+ N+L+  Y  CG + +A  LL  D 
Sbjct: 7   FADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDI 66

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA----------------------- 553
              +VI+ N ++ GY   G  ++A++LF  M    VA                       
Sbjct: 67  AHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFV 126

Query: 554 ---------PDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSR 604
                    P+  TF   + +C  +G     L+L   M + +  +   +  A ++D+  R
Sbjct: 127 SMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLG-MVQKFGSQDDSDVAAALVDMFVR 185

Query: 605 AGRLDEA 611
            G +D A
Sbjct: 186 CGTVDLA 192


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/720 (32%), Positives = 389/720 (54%), Gaps = 60/720 (8%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPD 107
           ++  Y+K G +  AR++F++MP+R++V+WN+MIAG   ++   EA + F  M      P 
Sbjct: 170 LVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPS 229

Query: 108 LFSWALMITCYTRKGELEKARELFDLLPNKE-DTACWNAMVAGYAKIGNYNEAKKLLDAM 166
             S   +     +   +E  R +   +  ++  +A  N ++  Y+K G+ + A+++ D M
Sbjct: 230 SVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQM 289

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAW 222
             ++ VSW +M++GY  NG      + F+ M+  +V    VS         E  DL+   
Sbjct: 290 VDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGK 349

Query: 223 KF----FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
           +      Q+  + +++    ++  YA+ G   +A++LF  +  R++VAW+A+IAA VQ G
Sbjct: 350 EIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTG 409

Query: 279 QIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQT 330
             EEA  LF EM  +    N V+  +++     ++ L   + +    +      +++  T
Sbjct: 410 YPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGT 469

Query: 331 AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNK 386
           A++S Y +      A   F+++ + D+V WN +I GYAQ G    AI++F ++    +N 
Sbjct: 470 ALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINP 529

Query: 387 DIVTW-----------------------------------NTMIAGYAQIRQMDDAVKIF 411
           D  T                                    N +I  YA+   +  A  +F
Sbjct: 530 DAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLF 589

Query: 412 EEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAAL 471
            +    ++ V+WN +I+ ++QN    +A+  F  M  E    +  T    L A A+LAA 
Sbjct: 590 NKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAF 649

Query: 472 QLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGY 531
           + G   H   I+ G++++  VGNSLI MYAKCG++  +E LF + D  D +SWN++++GY
Sbjct: 650 REGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGY 709

Query: 532 AINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL 591
           A++G+   AI LF  M    V  D V+F+ VLSAC H GLV+ G K+F  M++ Y I+P 
Sbjct: 710 AVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPD 769

Query: 592 VEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLS 651
           +EHYACM+DLL RAG  DE    +K M ++P+AG+WG LLG+CRMH N+KLG +A++ L 
Sbjct: 770 LEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLV 829

Query: 652 ELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD 711
           +LEP+  + + +LS+++A++GRW +  K R  M   G +K PGCSW+E+KN++H F  GD
Sbjct: 830 KLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGD 889



 Score =  202 bits (513), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 139/537 (25%), Positives = 249/537 (46%), Gaps = 55/537 (10%)

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSW 205
           Y+     + A+ + D+ P+ + + WNSM+  YT++ + + A + +  M E+    D  ++
Sbjct: 73  YSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTF 132

Query: 206 NLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
             +L       +L     F  +I     E++V     ++  Y++ G +  AR +FD+MP 
Sbjct: 133 TFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPK 192

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRL 317
           R+VVAWNAMIA   Q     EA   F  M     E + VS   +  G  +++ ++  R +
Sbjct: 193 RDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSI 252

Query: 318 LDQMPYKNI--AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
              +  ++   A    +I  Y +   +D A ++FD++   D V W  M+ GYA  G   E
Sbjct: 253 HGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVE 312

Query: 376 AINLFRQM---------------------------------------VNKDIVTWNTMIA 396
            + LF +M                                       ++ DI+    ++ 
Sbjct: 313 VLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMV 372

Query: 397 GYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHS 456
            YA+  + + A ++F  + + R+ V+W+A+I+  +Q  +  +AL +F  M  +  K +  
Sbjct: 373 MYAKCGETEKAKQLFWGL-QGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRV 431

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
           TL   L ACA L+ L+LG+ IH   +K+   +DL  G +L++MYAKCG    A   F   
Sbjct: 432 TLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRM 491

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGL 576
              D+++WNSLI GYA  G+   AI +F ++ +  + PD  T +GV+ AC+ +  +D G 
Sbjct: 492 SSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGT 551

Query: 577 KLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
            +   + ++   E        +ID+ ++ G L  A  +        +   W  ++ A
Sbjct: 552 CIHGLIVKL-GFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 117/510 (22%), Positives = 216/510 (42%), Gaps = 107/510 (20%)

Query: 14  YVFNQ-------NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDAR 66
           YVF +       N  I    K G V+ A ++F QM  ++ V++ +M++ YA NG   +  
Sbjct: 255 YVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVL 314

Query: 67  KLFEQMPQRNL-VSWNSMIAGYL---HNDKVKEAREL----FDKMFRPDLFSWALMITCY 118
           +LF++M   N+ ++  S ++ +L       +++ +E+      +    D+     ++  Y
Sbjct: 315 ELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMY 374

Query: 119 TRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------PSK--- 169
            + GE EKA++LF  L  + D   W+A++A   + G   EA  L   M      P++   
Sbjct: 375 AKCGETEKAKQLFWGLQGR-DLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTL 433

Query: 170 ------------------------------NIVSWNSMLSGYTKNGEMHLASKFFEAMEE 199
                                         ++ +  +++S Y K G    A   F  M  
Sbjct: 434 MSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSS 493

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKI------PEQNVVSWVT--------------- 238
           RD+V+WN +++GY ++ D  +A   F K+      P+   +  V                
Sbjct: 494 RDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCI 553

Query: 239 ------------------MLSGYARNGRMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQ 279
                             ++  YA+ G +  A  LF++    ++ V WN +IAAY+Q G 
Sbjct: 554 HGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGH 613

Query: 280 IEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEA---RRLLDQMPY-KNIAAQTA 331
            +EA   F +M       N V++ +++     +A   E       + QM +  N     +
Sbjct: 614 AKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNS 673

Query: 332 MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKD 387
           +I  Y +  ++D + ++F+++   D V WN M+ GYA  G  D AI LF  M    V  D
Sbjct: 674 LIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQID 733

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
            V++ ++++       +++  KIF  M  +
Sbjct: 734 SVSFVSVLSACRHAGLVEEGRKIFHSMSDK 763



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 168/394 (42%), Gaps = 75/394 (19%)

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
           +K+  + T +I+ Y    + D A  +FD       + WN MI+ Y +  + +EA+ ++  
Sbjct: 60  FKHHHSITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYC 119

Query: 383 MVNK---------------------------------------DIVTWNTMIAGYAQIRQ 403
           MV K                                       D+     ++  Y+++  
Sbjct: 120 MVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGD 179

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS 463
           +  A ++F++M K R+ V+WNA+I+G  Q+E   +A+  F  M   G +    +L     
Sbjct: 180 LKRAREVFDKMPK-RDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFP 238

Query: 464 ACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
               L+ ++L R IH    +  + +   V N LI +Y+KCG +  A  +F      D +S
Sbjct: 239 GICKLSNIELCRSIHGYVFRRDFSSA--VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVS 296

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM- 582
           W +++AGYA NG   E ++LF++M +  V  + V+ +    A +    ++ G ++  C  
Sbjct: 297 WGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCAL 356

Query: 583 -----TEVYAIEPLVEHYA------------------------CMIDLLSRAGRLDEA-- 611
                +++    PL+  YA                         +I  L + G  +EA  
Sbjct: 357 QQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALS 416

Query: 612 -FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
            F+ ++  K+KPN     ++L AC     +KLG+
Sbjct: 417 LFQEMQNQKMKPNRVTLMSILPACADLSLLKLGK 450



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 87/179 (48%), Gaps = 12/179 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  I    K G+++ + K+F++M  K+TV++N+M+S YA +G  + A  LF  M +  + 
Sbjct: 672 NSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQ 731

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARE 129
              VS+ S+++   H   V+E R++F  M      +PDL  +A M+    R G  ++   
Sbjct: 732 IDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLG 791

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLD---AMPSKNIVSWNSMLSGYTKNG 185
              ++P + D   W A++       N    +  LD    +  +N   +  + S Y ++G
Sbjct: 792 FIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSG 850



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 16/177 (9%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           LS+C HL  L    QIH   I SG+ +   + + LI +Y+   +   A  +F        
Sbjct: 39  LSSCKHLNPL---LQIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPNPSR 94

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL--- 578
           I WNS+I  Y  +    EA++++  MV +G+ PD  TF  VL AC+      G L L   
Sbjct: 95  ILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACT------GALNLQEG 148

Query: 579 --FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
             F    +   +E  V   A ++D+ S+ G L  A E+   M  K +   W  ++  
Sbjct: 149 VWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP-KRDVVAWNAMIAG 204


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/463 (41%), Positives = 296/463 (63%), Gaps = 2/463 (0%)

Query: 259 MPIRNVVAWNAMIAAYVQ-RGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL 317
           M ++  V WN+++A   + RG+++EA  LF+++PE + VS+ TM+  YVR + ++ A+  
Sbjct: 1   MTLKTTVTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAF 60

Query: 318 LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAI 377
            + MP K+  +   MI+G+ QN++MD+A  +F  + T +VV WN MI GY +CG +D A+
Sbjct: 61  FEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSAL 120

Query: 378 NLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHL 437
            LF +   K +V W  MI GY ++ ++  A ++FE+M   +N V+WNA+I+G+++N    
Sbjct: 121 KLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKM-PEKNLVTWNAMIAGYIENHRAE 179

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
           D +K+F  M   G + + STL+ AL  C+ L+ALQLGRQ+H L  KS   +D   G SLI
Sbjct: 180 DGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLI 239

Query: 498 TMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
           +MY KCG +++   LF      DV++WN++I+GYA +G   +A+ LF+EM+ +G+ PD +
Sbjct: 240 SMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWI 299

Query: 558 TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKG 617
           TF+ VL AC+H G  D G+K F  M + Y +    +HY CM+DLL RAG+L EA ++++ 
Sbjct: 300 TFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEK 359

Query: 618 MKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEV 677
           M  KP+A ++GTLLGACR+H+N ++   A +KL  L+P   + Y  L+N++A   RWD V
Sbjct: 360 MPFKPHAAVFGTLLGACRIHKNTEMAEFASQKLLNLDPASATGYVQLANVYAATKRWDHV 419

Query: 678 EKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
            +VR SM+     K PG SWIEVK+  H F SGD      A I
Sbjct: 420 ARVRKSMKSCKVVKTPGYSWIEVKSMAHQFRSGDKFHPELASI 462



 Score =  199 bits (505), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 109/315 (34%), Positives = 181/315 (57%), Gaps = 13/315 (4%)

Query: 120 RKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLS 179
           ++G+L++A+ELF  +P + D   +N M++ Y +  N   A+   + MP K+  SWN+M++
Sbjct: 19  KRGKLKEAQELFVKIP-EPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMIT 77

Query: 180 GYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTM 239
           G+ +N +M  A   F  M  ++VV+WN M+ GYVE  DLDSA K F+K P ++VV+W  M
Sbjct: 78  GFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSALKLFEKAPFKSVVAWTAM 137

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNP 295
           ++GY + GR+  A RLF++MP +N+V WNAMIA Y++  + E+  +LF  M     + N 
Sbjct: 138 ITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNS 197

Query: 296 VSWTTMIDGYVRIAKLDEAR---RLLDQMPY-KNIAAQTAMISGYVQNKRMDEANQIFDK 351
            + ++ + G   ++ L   R   +L+ + P   +  A T++IS Y +   +++  ++F +
Sbjct: 198 STLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQ 257

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVTWNTMIAGYAQIRQMDDA 407
           +   DVV WN MI GYAQ G   +A+ LF +M+ K    D +T+  ++         D  
Sbjct: 258 VPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLG 317

Query: 408 VKIFEEMGKRRNTVS 422
           VK F  M K    V+
Sbjct: 318 VKYFHSMAKDYGLVA 332



 Score =  197 bits (502), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/449 (28%), Positives = 210/449 (46%), Gaps = 82/449 (18%)

Query: 166 MPSKNIVSWNSMLSGYTKN-GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKF 224
           M  K  V+WNS+L+G +K  G++  A + F  + E D VS+N ML  YV   +++ A  F
Sbjct: 1   MTLKTTVTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAF 60

Query: 225 FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA 284
           F+ +P ++  SW TM++G+A+N +M +AR LF  MP +NVV WNAMI+ YV+ G ++ A 
Sbjct: 61  FEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSAL 120

Query: 285 RLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDE 344
           +LF + P ++ V+WT MI GY+++ ++  A RL ++MP KN+    AMI+GY++N R ++
Sbjct: 121 KLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAED 180

Query: 345 ANQIFDKI-----------------------------GTHDVVC----------WNVMIK 365
             ++F  +                               H +VC             +I 
Sbjct: 181 GVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLIS 240

Query: 366 GYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
            Y +CG +++   LF Q+  +D+VTWN MI+GYAQ  +   A+ +F+E            
Sbjct: 241 MYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDE------------ 288

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG-RQIHHLAIKS 484
                               M ++G K D  T    L AC H     LG +  H +A   
Sbjct: 289 --------------------MIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDY 328

Query: 485 GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLF 544
           G V        ++ +  + G++  A         VD+I         A+ G    A ++ 
Sbjct: 329 GLVAKPDHYTCMVDLLGRAGKLVEA---------VDLIEKMPFKPHAAVFGTLLGACRIH 379

Query: 545 EEMVMEGVAPDPVTFIGVLSACSHVGLVD 573
           +   M   A   +  +   SA  +V L +
Sbjct: 380 KNTEMAEFASQKLLNLDPASATGYVQLAN 408



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 122/433 (28%), Positives = 210/433 (48%), Gaps = 85/433 (19%)

Query: 41  MSQKNTVTYNSMISAYAKN-GRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEAREL 99
           M+ K TVT+NS+++  +K  G++ +A++LF ++P+ + VS+N+M++ Y+ N  ++ A+  
Sbjct: 1   MTLKTTVTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAF 60

Query: 100 FDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA 159
           F+ M   D  SW  MIT + +  +++KAR+LF ++P K +   WNAM++GY + G+ + A
Sbjct: 61  FEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTK-NVVTWNAMISGYVECGDLDSA 119

Query: 160 KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLD 219
            KL +  P K++V+W +M++GY K G + LA + FE M E+++V+WN M+ GY+E    +
Sbjct: 120 LKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAE 179

Query: 220 SAWKFFQKI------PEQNVVS---------------------------------WVTML 240
              K F+ +      P  + +S                                   +++
Sbjct: 180 DGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLI 239

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN------ 294
           S Y + G + +  +LF Q+P R+VV WNAMI+ Y Q G+ ++A  LF EM E+       
Sbjct: 240 SMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWI 299

Query: 295 ----------------------------------PVSWTTMIDGYVRIAKLDEARRLLDQ 320
                                             P  +T M+D   R  KL EA  L+++
Sbjct: 300 TFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEK 359

Query: 321 MPYKNIAAQTAMISGYV---QNKRMDE-ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
           MP+K  AA    + G     +N  M E A+Q    +       +  +   YA   R D  
Sbjct: 360 MPFKPHAAVFGTLLGACRIHKNTEMAEFASQKLLNLDPASATGYVQLANVYAATKRWDHV 419

Query: 377 INLFRQMVNKDIV 389
             + + M +  +V
Sbjct: 420 ARVRKSMKSCKVV 432



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 164/324 (50%), Gaps = 21/324 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V   N  I+   + G ++ A+K+F +   K+ V + +MI+ Y K GR+  A +LFE+MP+
Sbjct: 100 VVTWNAMISGYVECGDLDSALKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPE 159

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKAREL 130
           +NLV+WN+MIAGY+ N + ++  +LF  M     +P+  + +  +   +    L+  R++
Sbjct: 160 KNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQV 219

Query: 131 FDLL---PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
             L+   P  +DT    ++++ Y K G   +  KL   +P +++V+WN+M+SGY ++GE 
Sbjct: 220 HQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEG 279

Query: 188 HLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV-----SWVT 238
             A   F+ M E+    D +++  +L         D   K+F  + +   +      +  
Sbjct: 280 KKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTC 339

Query: 239 MLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
           M+    R G+++EA  L ++MP + +   +  ++ A       E A     ++   +P S
Sbjct: 340 MVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIHKNTEMAEFASQKLLNLDPAS 399

Query: 298 WTTMIDGYVRIAKLDEARRLLDQM 321
            T    GYV++A +  A +  D +
Sbjct: 400 AT----GYVQLANVYAATKRWDHV 419


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/720 (32%), Positives = 389/720 (54%), Gaps = 60/720 (8%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPD 107
           ++  Y+K G +  AR++F++MP+R++V+WN+MIAG   ++   EA + F  M      P 
Sbjct: 170 LVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPS 229

Query: 108 LFSWALMITCYTRKGELEKARELFDLLPNKE-DTACWNAMVAGYAKIGNYNEAKKLLDAM 166
             S   +     +   +E  R +   +  ++  +A  N ++  Y+K G+ + A+++ D M
Sbjct: 230 SVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQM 289

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAW 222
             ++ VSW +M++GY  NG      + F+ M+  +V    VS         E  DL+   
Sbjct: 290 VDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGK 349

Query: 223 KF----FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
           +      Q+  + +++    ++  YA+ G   +A++LF  +  R++VAW+A+IAA VQ G
Sbjct: 350 EIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTG 409

Query: 279 QIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQT 330
             EEA  LF EM  +    N V+  +++     ++ L   + +    +      +++  T
Sbjct: 410 YPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGT 469

Query: 331 AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNK 386
           A++S Y +      A   F+++ + D+V WN +I GYAQ G    AI++F ++    +N 
Sbjct: 470 ALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINP 529

Query: 387 DIVTW-----------------------------------NTMIAGYAQIRQMDDAVKIF 411
           D  T                                    N +I  YA+   +  A  +F
Sbjct: 530 DAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLF 589

Query: 412 EEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAAL 471
            +    ++ V+WN +I+ ++QN    +A+  F  M  E    +  T    L A A+LAA 
Sbjct: 590 NKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAF 649

Query: 472 QLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGY 531
           + G   H   I+ G++++  VGNSLI MYAKCG++  +E LF + D  D +SWN++++GY
Sbjct: 650 REGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGY 709

Query: 532 AINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL 591
           A++G+   AI LF  M    V  D V+F+ VLSAC H GLV+ G K+F  M++ Y I+P 
Sbjct: 710 AVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPD 769

Query: 592 VEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLS 651
           +EHYACM+DLL RAG  DE    +K M ++P+AG+WG LLG+CRMH N+KLG +A++ L 
Sbjct: 770 LEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLV 829

Query: 652 ELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD 711
           +LEP+  + + +LS+++A++GRW +  K R  M   G +K PGCSW+E+KN++H F  GD
Sbjct: 830 KLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGD 889



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 139/537 (25%), Positives = 249/537 (46%), Gaps = 55/537 (10%)

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSW 205
           Y+     + A+ + D+ P+ + + WNSM+  YT++ + + A + +  M E+    D  ++
Sbjct: 73  YSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTF 132

Query: 206 NLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
             +L       +L     F  +I     E++V     ++  Y++ G +  AR +FD+MP 
Sbjct: 133 TFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPK 192

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRL 317
           R+VVAWNAMIA   Q     EA   F  M     E + VS   +  G  +++ ++  R +
Sbjct: 193 RDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSI 252

Query: 318 LDQMPYKNI--AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
              +  ++   A    +I  Y +   +D A ++FD++   D V W  M+ GYA  G   E
Sbjct: 253 HGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVE 312

Query: 376 AINLFRQM---------------------------------------VNKDIVTWNTMIA 396
            + LF +M                                       ++ DI+    ++ 
Sbjct: 313 VLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMV 372

Query: 397 GYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHS 456
            YA+  + + A ++F  + + R+ V+W+A+I+  +Q  +  +AL +F  M  +  K +  
Sbjct: 373 MYAKCGETEKAKQLFWGL-QGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRV 431

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
           TL   L ACA L+ L+LG+ IH   +K+   +DL  G +L++MYAKCG    A   F   
Sbjct: 432 TLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRM 491

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGL 576
              D+++WNSLI GYA  G+   AI +F ++ +  + PD  T +GV+ AC+ +  +D G 
Sbjct: 492 SSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGT 551

Query: 577 KLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
            +   + ++   E        +ID+ ++ G L  A  +        +   W  ++ A
Sbjct: 552 CIHGLIVKL-GFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA 607



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 116/510 (22%), Positives = 215/510 (42%), Gaps = 107/510 (20%)

Query: 14  YVFNQ-------NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDAR 66
           YVF +       N  I    K G V+ A ++F QM  ++ V++ +M++ YA NG   +  
Sbjct: 255 YVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVL 314

Query: 67  KLFEQMPQRNL-VSWNSMIAGYL---HNDKVKEAREL----FDKMFRPDLFSWALMITCY 118
           +LF++M   N+ ++  S ++ +L       +++ +E+      +    D+     ++  Y
Sbjct: 315 ELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMY 374

Query: 119 TRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------PSK--- 169
            + GE EKA++LF  L  + D   W+A++A   + G   EA  L   M      P++   
Sbjct: 375 AKCGETEKAKQLFWGLQGR-DLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTL 433

Query: 170 ------------------------------NIVSWNSMLSGYTKNGEMHLASKFFEAMEE 199
                                         ++ +  +++S Y K G    A   F  M  
Sbjct: 434 MSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSS 493

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKI------PEQNVVSWVT--------------- 238
           RD+V+WN +++GY ++ D  +A   F K+      P+   +  V                
Sbjct: 494 RDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCI 553

Query: 239 ------------------MLSGYARNGRMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQ 279
                             ++  YA+ G +  A  LF++    ++ V WN +IAAY+Q G 
Sbjct: 554 HGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGH 613

Query: 280 IEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEA---RRLLDQMPY-KNIAAQTA 331
            +EA   F +M       N V++ +++     +A   E       + QM +  N     +
Sbjct: 614 AKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNS 673

Query: 332 MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKD 387
           +I  Y +  ++  + ++F+++   D V WN M+ GYA  G  D AI LF  M    V  D
Sbjct: 674 LIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQID 733

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
            V++ ++++       +++  KIF  M  +
Sbjct: 734 SVSFVSVLSACRHXGLVEEGRKIFHSMSDK 763



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 168/394 (42%), Gaps = 75/394 (19%)

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
           +K+  + T +I+ Y    + D A  +FD       + WN MI+ Y +  + +EA+ ++  
Sbjct: 60  FKHHHSITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYC 119

Query: 383 MVNK---------------------------------------DIVTWNTMIAGYAQIRQ 403
           MV K                                       D+     ++  Y+++  
Sbjct: 120 MVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGD 179

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS 463
           +  A ++F++M K R+ V+WNA+I+G  Q+E   +A+  F  M   G +    +L     
Sbjct: 180 LKRAREVFDKMPK-RDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFP 238

Query: 464 ACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
               L+ ++L R IH    +  + +   V N LI +Y+KCG +  A  +F      D +S
Sbjct: 239 GICKLSNIELCRSIHGYVFRRDFSSA--VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVS 296

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM- 582
           W +++AGYA NG   E ++LF++M +  V  + V+ +    A +    ++ G ++  C  
Sbjct: 297 WGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCAL 356

Query: 583 -----TEVYAIEPLVEHYA------------------------CMIDLLSRAGRLDEA-- 611
                +++    PL+  YA                         +I  L + G  +EA  
Sbjct: 357 QQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALS 416

Query: 612 -FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
            F+ ++  K+KPN     ++L AC     +KLG+
Sbjct: 417 LFQEMQNQKMKPNRVTLMSILPACADLSLLKLGK 450



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 12/179 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  I    K G++  + K+F++M  K+TV++N+M+S YA +G  + A  LF  M +  + 
Sbjct: 672 NSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQ 731

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARE 129
              VS+ S+++   H   V+E R++F  M      +PDL  +A M+    R G  ++   
Sbjct: 732 IDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLG 791

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLD---AMPSKNIVSWNSMLSGYTKNG 185
              ++P + D   W A++       N    +  LD    +  +N   +  + S Y ++G
Sbjct: 792 FIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSG 850



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 16/177 (9%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           LS+C HL  L    QIH   I SG+ +   + + LI +Y+   +   A  +F        
Sbjct: 39  LSSCKHLNPL---LQIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPNPSR 94

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL--- 578
           I WNS+I  Y  +    EA++++  MV +G+ PD  TF  VL AC+      G L L   
Sbjct: 95  ILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACT------GALNLQEG 148

Query: 579 --FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
             F    +   +E  V   A ++D+ S+ G L  A E+   M  K +   W  ++  
Sbjct: 149 VWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP-KRDVVAWNAMIAG 204


>gi|325260825|gb|ADZ04643.1| hypothetical protein [Oryza punctata]
          Length = 674

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 233/642 (36%), Positives = 362/642 (56%), Gaps = 17/642 (2%)

Query: 70  EQMPQR--NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKA 127
           E  P R  N    N+++  Y    ++++A+ LFD+M   D+ SW  ++T Y   G+L  A
Sbjct: 29  EPPPPRGPNRAHLNALLTAYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASA 88

Query: 128 RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
           R +FD +P + +   WNA+++ Y +      A  L   MP+KN VS+ +++SG  K G +
Sbjct: 89  RLVFDDMP-RRNAPSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAGML 147

Query: 188 HLASKFFEAMEE--RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR 245
             A   +E M +  RD V  N ++ GY+ + +L  A + F+ +  ++V+SW  M+ G  +
Sbjct: 148 REAELVYEEMPQQWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCK 207

Query: 246 NGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTM 301
           +G + EARR+FD MP R+VV+W +MI  YV+RG   +   LF+ M       N  + + +
Sbjct: 208 HGSVSEARRVFDAMPERSVVSWTSMIRGYVKRGMCSDGLLLFLNMRREGVQVNATTLSVV 267

Query: 302 IDGYVRIAKLDEA---RRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV 357
           +D     +   E      L+  M ++ +I    ++I  Y +   M +A + F+ +   D+
Sbjct: 268 LDACAGASLAREGIQIHNLIISMGFELDIFLGDSVIIMYSRFGWMADAQRAFNCMQQKDI 327

Query: 358 VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
           V WN +I GY Q   ++EA  LF+ M  KD V+W +M+ G+A    M ++V++FE+M   
Sbjct: 328 VSWNSLITGYVQHDMVEEAHVLFKLMPQKDAVSWTSMVVGFANRGWMRESVELFEQM-PV 386

Query: 418 RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI 477
           ++ V+W A+IS F+ N  +L A++ F  M+QEG K +  T +C LSA A LA L  GRQ 
Sbjct: 387 KDVVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTITFSCLLSALASLAMLNQGRQA 446

Query: 478 HHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNA 537
           H  +I  G+V D  V  SLI+MYAKCGR+  A  +F       +I+ NS+I  +  +G A
Sbjct: 447 HAYSINMGWVFDSAVHTSLISMYAKCGRLAEAHHVFSSISNPSLIAINSMITAFVQHGFA 506

Query: 538 TEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYAC 597
            +A+KLF +M   G  P+ VTF+G+L+ C+  G V  G   FE M  VY +EP  EHY C
Sbjct: 507 EDALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTC 566

Query: 598 MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK 657
           M+DLL RAG L EA EM+  M    ++  W  LL A  +H N+   +IA +KL E +P  
Sbjct: 567 MVDLLGRAGLLAEALEMINSMPQNDHSDAWAALLSASSLHSNLAFAKIAAQKLLEKDPYD 626

Query: 658 TSCYALLSNMHAEAG-RWDEVEKVRVSMEGSGAQKQPGCSWI 698
            + Y +LS M + AG  ++E++KV V +    A K+PG S I
Sbjct: 627 ATAYTVLSKMFSSAGMEYEEMQKV-VQLSNM-ASKRPGYSLI 666



 Score =  236 bits (601), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 140/504 (27%), Positives = 256/504 (50%), Gaps = 49/504 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +T  G+ GR+ +A  +F QM  ++ +++ ++++AYA  G +  AR +F+ MP+RN  
Sbjct: 42  NALLTAYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNAP 101

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK- 137
           SWN++++ YL   + + A  LF KM   +  S+  +I+   + G L +A  +++ +P + 
Sbjct: 102 SWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAGMLREAELVYEEMPQQW 161

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            D    NA++AGY ++G    A ++ + M  ++++SW++M+ G  K+G +  A + F+AM
Sbjct: 162 RDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFDAM 221

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS---------------- 241
            ER VVSW  M+ GYV+          F  +  + V    T LS                
Sbjct: 222 PERSVVSWTSMIRGYVKRGMCSDGLLLFLNMRREGVQVNATTLSVVLDACAGASLAREGI 281

Query: 242 -----------------------GYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
                                   Y+R G M +A+R F+ M  +++V+WN++I  YVQ  
Sbjct: 282 QIHNLIISMGFELDIFLGDSVIIMYSRFGWMADAQRAFNCMQQKDIVSWNSLITGYVQHD 341

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
            +EEA  LF  MP+++ VSWT+M+ G+     + E+  L +QMP K++ A TA+IS ++ 
Sbjct: 342 MVEEAHVLFKLMPQKDAVSWTSMVVGFANRGWMRESVELFEQMPVKDVVAWTAIISSFIT 401

Query: 339 NKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVT 390
           N     A + F ++       + + ++ ++   A    +++        +N     D   
Sbjct: 402 NGDYLSAVRWFCRMSQEGCKPNTITFSCLLSALASLAMLNQGRQAHAYSINMGWVFDSAV 461

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
             ++I+ YA+  ++ +A  +F  +    + ++ N++I+ F+Q+ F  DALK+F  M   G
Sbjct: 462 HTSLISMYAKCGRLAEAHHVFSSISN-PSLIAINSMITAFVQHGFAEDALKLFTKMQNAG 520

Query: 451 KKADHSTLACALSACAHLAALQLG 474
            K +H T    L+ CA    +Q G
Sbjct: 521 YKPNHVTFLGILTGCARAGFVQQG 544



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 109/462 (23%), Positives = 191/462 (41%), Gaps = 92/462 (19%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + +  +  L K G V EA ++F  M +++ V++ SMI  Y K G  +D   LF  M +
Sbjct: 195 VISWSAMVDGLCKHGSVSEARRVFDAMPERSVVSWTSMIRGYVKRGMCSDGLLLFLNMRR 254

Query: 75  RNL--------VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEK 126
             +        V  ++     L  + ++    +    F  D+F    +I  Y+R G +  
Sbjct: 255 EGVQVNATTLSVVLDACAGASLAREGIQIHNLIISMGFELDIFLGDSVIIMYSRFGWMAD 314

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           A+  F+ +  K D   WN+++ GY +     EA  L   MP K+ VSW SM+ G+   G 
Sbjct: 315 AQRAFNCMQQK-DIVSWNSLITGYVQHDMVEEAHVLFKLMPQKDAVSWTSMVVGFANRGW 373

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV------------- 233
           M  + + FE M  +DVV+W  ++  ++   D  SA ++F ++ ++               
Sbjct: 374 MRESVELFEQMPVKDVVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTITFSCLLSA 433

Query: 234 -------------------VSWV-------TMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
                              + WV       +++S YA+ GR+ EA  +F  +   +++A 
Sbjct: 434 LASLAMLNQGRQAHAYSINMGWVFDSAVHTSLISMYAKCGRLAEAHHVFSSISNPSLIAI 493

Query: 268 NAMIAAYVQRGQIEEAARLFIEMP------------------------------------ 291
           N+MI A+VQ G  E+A +LF +M                                     
Sbjct: 494 NSMITAFVQHGFAEDALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRP 553

Query: 292 ----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA-AQTAMISGYVQNKRMDEAN 346
               E NP  +T M+D   R   L EA  +++ MP  + + A  A++S    +  +  A 
Sbjct: 554 VYGVEPNPEHYTCMVDLLGRAGLLAEALEMINSMPQNDHSDAWAALLSASSLHSNLAFAK 613

Query: 347 QIFDKI---GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
               K+     +D   + V+ K ++  G   E +    Q+ N
Sbjct: 614 IAAQKLLEKDPYDATAYTVLSKMFSSAGMEYEEMQKVVQLSN 655


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 230/738 (31%), Positives = 385/738 (52%), Gaps = 111/738 (15%)

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           F+P +F    +I  Y +  +LE A ++FD +P + DT  WNAM+ GYA  G+   A+KL 
Sbjct: 73  FKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQR-DTVSWNAMLFGYAGRGDIGVAQKLF 131

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFF----------------------EAMEER- 200
           DAMP +++VSWNS++SGY  NG+       F                       ++E+  
Sbjct: 132 DAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHG 191

Query: 201 ----------------DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYA 244
                           DVV+ + +LD Y +   LD + +FF  +PE+N VSW  +++G  
Sbjct: 192 GGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCV 251

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER--------NPV 296
           +N  +     LF +M    V    +  A+  +      A RL  ++           + V
Sbjct: 252 QNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVV 311

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKR---MDEAN------- 346
             T  +D Y++   L +A++L + +P  N+ +  A+I GY ++ +   +DE +       
Sbjct: 312 IGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGLGLDEVSLSGAFRA 371

Query: 347 -----------QI----FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTW 391
                      Q+       +   ++   N ++  Y +CG + EA  +F +MV++D V+W
Sbjct: 372 CAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSW 431

Query: 392 NTMIAG-------------------------------------YAQIRQMDDAVKIFEEM 414
           N +IA                                      Y++   M+ A K+ + +
Sbjct: 432 NAIIAAHEQNGNEEKTLSLFIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRL 491

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
            ++   VSWNA+ISGF   +   +A K F  M + G   D+ T A  L  CA+L  ++LG
Sbjct: 492 AEQ-TVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELG 550

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
           +QIH   IK    +D ++ ++L+ MY+KCG +Q+ +L+F+ A   D ++WN+++ GYA +
Sbjct: 551 KQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQH 610

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEH 594
           G   EA+K+FE M +E V P+  TF+ VL AC H+GLV+ GL  F  M   Y ++P +EH
Sbjct: 611 GLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEH 670

Query: 595 YACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE 654
           Y+C++D++ R+G++ +A E+++GM  + +A IW TLL  C++H N+++   A   + +LE
Sbjct: 671 YSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLE 730

Query: 655 PQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQ 714
           P+ ++ Y LLSN++A AG W+EV K+R  M  +G +K+PGCSWIE+K+++H FL GD   
Sbjct: 731 PEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDKAH 790

Query: 715 CRTAEICNTLKTLAAQIR 732
            R+ EI   L  L  +++
Sbjct: 791 PRSKEIYENLDVLTDEMK 808



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 158/677 (23%), Positives = 276/677 (40%), Gaps = 181/677 (26%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  N  I    K   +E A K+F  M Q++TV++N+M+  YA  G +  A+KLF+ MP+
Sbjct: 77  VFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPE 136

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKAREL 130
           R++VSWNS+I+GYLHN   ++  ++F +M R     D  ++A+++   +   +     ++
Sbjct: 137 RDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQI 196

Query: 131 FDL---LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
             L   +    D    +A++  YAK    + + +   +MP KN VSW+++++G  +N ++
Sbjct: 197 HGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDL 256

Query: 188 HLASKFFEAMEE---------------------------------------RDVVSWNLM 208
               + F+ M++                                        DVV     
Sbjct: 257 RGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTAT 316

Query: 209 LDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR------ 262
           LD Y++ ++L  A K F  +P  N+ S+  ++ GYAR+ + L    +      R      
Sbjct: 317 LDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGLGLDEVSLSGAFRACAVIK 376

Query: 263 -------------------NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMI- 302
                              N+   NA++  Y + G + EA  +F EM  R+ VSW  +I 
Sbjct: 377 GDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIA 436

Query: 303 ---------------------------DGYVRIAKLD---------EARRLLDQMPYKNI 326
                                      D +V IA +D         +A +L D++  + +
Sbjct: 437 AHEQNGNEEKTLSLFIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTV 496

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTHDV------------VCWNV------------ 362
            +  A+ISG+   K+ +EA + F K+    V             C N+            
Sbjct: 497 VSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQ 556

Query: 363 ---------------MIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDA 407
                          ++  Y++CG M +   +F +  N+D VTWN M+ GYAQ    ++A
Sbjct: 557 IIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEA 616

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
           +KIFE                                 M  E  K +H+T    L AC H
Sbjct: 617 LKIFE--------------------------------YMQLENVKPNHATFLAVLRACGH 644

Query: 468 LAALQLGRQIHHLAIKS-GYVNDLFVGNSLITMYAKCGRIQNA-ELLFKDADPVDVISWN 525
           +  ++ G    H  + + G    L   + ++ +  + G++  A EL+       D + W 
Sbjct: 645 MGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWR 704

Query: 526 SLIAGYAINGNATEAIK 542
           +L++   I+GN   A K
Sbjct: 705 TLLSICKIHGNVEVAEK 721



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 199/399 (49%), Gaps = 34/399 (8%)

Query: 247 GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYV 306
           G+   AR +  +     V   N +I  Y++   +E A ++F  MP+R+ VSW  M+ GY 
Sbjct: 61  GKQAHARMILTEFK-PTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYA 119

Query: 307 RIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG----THDVVCWNV 362
               +  A++L D MP +++ +  ++ISGY+ N    +   +F ++G      D   + V
Sbjct: 120 GRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAV 179

Query: 363 MIKGYAQCGRMDEAINLFRQMV----NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRR 418
           ++K  +        I +    V    + D+VT + ++  YA+ +++D +++ F  M   +
Sbjct: 180 VLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSM-PEK 238

Query: 419 NTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIH 478
           N VSW+A+I+G +QN+     L++F  M + G     ST A    +CA L+AL+LG Q+H
Sbjct: 239 NWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLH 298

Query: 479 HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNAT 538
             A+K+ +  D+ +G + + MY KC  + +A+ LF      ++ S+N++I GYA +    
Sbjct: 299 GHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSD--- 355

Query: 539 EAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYAC- 597
                      +G+  D V+  G   AC+   ++ G L+  +      +++ L +   C 
Sbjct: 356 -----------KGLGLDEVSLSGAFRACA---VIKGDLEGLQ--VHGLSMKSLCQSNICV 399

Query: 598 ---MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
              ++D+  + G L EA  + + M +  +A  W  ++ A
Sbjct: 400 ANAILDMYGKCGALVEACLVFEEM-VSRDAVSWNAIIAA 437



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/367 (21%), Positives = 164/367 (44%), Gaps = 61/367 (16%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISA----------------------- 55
           N  +   GK G + EA  +F +M  ++ V++N++I+A                       
Sbjct: 401 NAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKSR 460

Query: 56  --------------YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFD 101
                         Y+K G +  A KL +++ ++ +VSWN++I+G+    + +EA++ F 
Sbjct: 461 LGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFS 520

Query: 102 KMFR----PDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIG 154
           KM      PD F++A ++        +E  +++   +  KE   D    + +V  Y+K G
Sbjct: 521 KMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCG 580

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLD 210
           N  + + + +  P+++ V+WN+M+ GY ++G    A K FE M+  +V     ++  +L 
Sbjct: 581 NMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLR 640

Query: 211 GYVELDDLDSAWKFFQKI-------PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR- 262
               +  ++    +F  +       P+    S V  + G  R+G++ +A  L + MP   
Sbjct: 641 ACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMG--RSGQVSKALELIEGMPFEA 698

Query: 263 NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLD 319
           + V W  +++     G +   E+AA   +++   +  ++  + + Y      +E  +L  
Sbjct: 699 DAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRK 758

Query: 320 QMPYKNI 326
            M +  +
Sbjct: 759 MMRFNGL 765



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 98/244 (40%), Gaps = 33/244 (13%)

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
            Q++     L I    + +       T +     C+   AL  G+Q H   I + +   +
Sbjct: 18  FQSKSPFKTLPISPFSSYQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTV 77

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSL----------------------- 527
           FV N LI MY KC  ++ A  +F      D +SWN++                       
Sbjct: 78  FVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPER 137

Query: 528 --------IAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
                   I+GY  NG+  + I +F +M   G   D  TF  VL +CS +    GG+++ 
Sbjct: 138 DVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIH 197

Query: 580 ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
               ++   +  V   + ++D+ ++  +LD + +    M  K N   W  ++  C  + +
Sbjct: 198 GLAVKM-GFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEK-NWVSWSAIIAGCVQNDD 255

Query: 640 IKLG 643
           ++ G
Sbjct: 256 LRGG 259



 Score = 42.7 bits (99), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 88/224 (39%), Gaps = 30/224 (13%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMS----QKNTVTYNSMISAYAKNGRVNDARKLFEQM-- 72
           N  +    + G  EEA+KIF  M     + N  T+ +++ A    G V      F  M  
Sbjct: 601 NAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLS 660

Query: 73  -----PQRNLVSWNSMIAGYLHNDKVKEARELFDKM-FRPDLFSWALMITCYTRKGELEK 126
                PQ    S    I G   + +V +A EL + M F  D   W  +++     G +E 
Sbjct: 661 NYGLDPQLEHYSCVVDIMG--RSGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEV 718

Query: 127 ARE----LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM--------PSKNIVSW 174
           A +    +  L P  ED+A +  +   YA  G +NE  KL   M        P  + +  
Sbjct: 719 AEKAAYSILQLEP--EDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEI 776

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDL 218
            S +  +    + H  SK  E  E  DV++  +   GY+   D 
Sbjct: 777 KSEVHAFLVGDKAHPRSK--EIYENLDVLTDEMKWVGYMPDTDF 818


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 239/783 (30%), Positives = 410/783 (52%), Gaps = 100/783 (12%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           N     +++  YA+ G ++DA    +++   ++V+WN++IAGY+     +EA  +FD+M 
Sbjct: 209 NLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRML 268

Query: 105 R----PDLFSWAL--------------------MITC---------------YTRKGELE 125
           +    PD F++A                     +I C               Y +  + E
Sbjct: 269 KIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEE 328

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA-------------------------- 159
              ++FD +  + +   WN++++  A+ G++N+A                          
Sbjct: 329 SCLKVFDEM-GERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMAS 387

Query: 160 -------------KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN 206
                          L+  + + +I+  ++++  Y+K G +  A + F ++ ER+ VS+N
Sbjct: 388 AGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYN 447

Query: 207 LMLDGYVELDDLDSAWKFFQKI-------PEQNVVSWVTMLSGYARN---GRMLEARRLF 256
            +L GYV+    + A + +  +       P+Q   + +  L    RN   GR + A  L 
Sbjct: 448 ALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAH-LI 506

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
                +N++    ++  Y + G++  A  +F  M ERN  SW +MI+GY +  +  EA R
Sbjct: 507 RANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALR 566

Query: 317 LLDQMPYKNIAAQ----TAMISGYVQ----NKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
           L  QM    I       ++M+S  V      K  +  N I       + +   V++  YA
Sbjct: 567 LFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYA 626

Query: 369 QCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
           +CG MD A  ++ Q + KD++  N M++ +    + +DA  +F++M ++RNT  WN++++
Sbjct: 627 KCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQM-EQRNTALWNSILA 685

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
           G+       ++   F+ M +   + D  T+   ++ C+ L AL+ G Q+H L IK G+VN
Sbjct: 686 GYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVN 745

Query: 489 -DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
             + +  +L+ MY+KCG I  A  +F + +  +++SWN++I+GY+ +G + EA+ L+EEM
Sbjct: 746 CSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEM 805

Query: 548 VMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGR 607
             +G+ P+ VTF+ +LSACSH GLV+ GL++F  M E Y IE   EHY CM+DLL RAGR
Sbjct: 806 PKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGR 865

Query: 608 LDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNM 667
           L++A E V+ M I+P    WG LLGACR+H+++ +GR+A ++L EL+PQ    Y ++SN+
Sbjct: 866 LEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNI 925

Query: 668 HAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
           +A AGRW EVE +R  M+  G +K PG SWIE+ ++I  F +G     +T EI N L+ L
Sbjct: 926 YAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHL 985

Query: 728 AAQ 730
             Q
Sbjct: 986 TLQ 988



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 150/644 (23%), Positives = 292/644 (45%), Gaps = 89/644 (13%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
           + + L + G KG   F  N  I    K    E  +K+F +M ++N VT+NS+ISA A+ G
Sbjct: 298 VHSKLIACGFKGD-TFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFG 356

Query: 61  RVNDARKLFEQMPQ----RNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWA 112
             NDA  LF +M +     N  +  S++        + + REL   + R     D+   +
Sbjct: 357 HFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGS 416

Query: 113 LMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV 172
            ++  Y++ G +E+A ++F  L  + + + +NA++AGY + G   EA +L   M S++ +
Sbjct: 417 ALVDMYSKCGMVEEAHQVFRSLLERNEVS-YNALLAGYVQEGKAEEALELYHDMQSEDGI 475

Query: 173 -----SWNSMLS----GYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWK 223
                ++ ++L+        N    + +    A   ++++    ++  Y E   L+ A +
Sbjct: 476 QPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKE 535

Query: 224 FFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQ 279
            F ++ E+N  SW +M+ GY +NG   EA RLF QM +  +     + ++M+++ V    
Sbjct: 536 IFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSD 595

Query: 280 IEEAARL--FI--EMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG 335
            ++   L  FI     E   +    ++D Y +   +D A ++ DQ   K++     M+S 
Sbjct: 596 SQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSA 655

Query: 336 YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI------- 388
           +V + R ++A  +FD++   +   WN ++ GYA  G   E+ N F +M+  DI       
Sbjct: 656 FVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTM 715

Query: 389 ---------------------------------VTWNTMIAGYAQIRQMDDAVKIFEEMG 415
                                            V    ++  Y++   +  A  +F+ M 
Sbjct: 716 VTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMN 775

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
             +N VSWNA+ISG+ ++    +AL ++  M ++G   +  T    LSAC+H   ++ G 
Sbjct: 776 G-KNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGL 834

Query: 476 QI-------HHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA-ELLFKDADPVDVISWNSL 527
           +I       +++  K+ +         ++ +  + GR+++A E + K     +V +W +L
Sbjct: 835 RIFTSMQEDYNIEAKAEHY------TCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGAL 888

Query: 528 IAGYAINGNAT----EAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
           +    ++ +       A +LFE   ++   P P   +  + A +
Sbjct: 889 LGACRVHKDMDMGRLAAQRLFE---LDPQNPGPYVIMSNIYAAA 929



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 113/431 (26%), Positives = 201/431 (46%), Gaps = 71/431 (16%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP----QRNLVSWNSMI 84
           GR+  A +IF++M+++N  ++NSMI  Y +NG   +A +LF+QM     + +  S +SM+
Sbjct: 528 GRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSML 587

Query: 85  AGYLHNDKVKEARELFDKMFRPDL----FSWALMITCYTRKGELEKARELFDLLPNKEDT 140
           +  +     ++ REL + + R  +        +++  Y + G ++ A +++D    K+D 
Sbjct: 588 SSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTI-KKDV 646

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER 200
              N MV+ +   G  N+AK L D M  +N   WNS+L+GY   G    +   F  M E 
Sbjct: 647 ILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLES 706

Query: 201 D----------------------------------------VVSWNLMLDGYVELDDLDS 220
           D                                        VV    ++D Y +   +  
Sbjct: 707 DIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITK 766

Query: 221 AWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQ 276
           A   F  +  +N+VSW  M+SGY+++G   EA  L+++MP +    N V + A+++A   
Sbjct: 767 ARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSH 826

Query: 277 RGQIEEAARLFIEMPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQT 330
            G +EE  R+F  M E   +      +T M+D   R  +L++A+  +++MP +  ++   
Sbjct: 827 TGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWG 886

Query: 331 AMISGYVQNKRMD----EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM--- 383
           A++     +K MD     A ++F+ +   +   + +M   YA  GR  E  ++ RQM   
Sbjct: 887 ALLGACRVHKDMDMGRLAAQRLFE-LDPQNPGPYVIMSNIYAAAGRWKEVEDI-RQMMKM 944

Query: 384 --VNKDI-VTW 391
             V KD  V+W
Sbjct: 945 KGVKKDPGVSW 955



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 155/327 (47%), Gaps = 23/327 (7%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           +    K G ++ A K++ Q  +K+ +  N M+SA+  +GR NDA+ LF+QM QRN   WN
Sbjct: 622 VDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWN 681

Query: 82  SMIAGYLHNDKVKEARELFDKMFRPDL----FSWALMITCYTRKGELEKARELFDLLPNK 137
           S++AGY +    KE+   F +M   D+     +   ++   +    LE   +L  L+  K
Sbjct: 682 SILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKK 741

Query: 138 EDTACW----NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
               C      A+V  Y+K G   +A+ + D M  KNIVSWN+M+SGY+K+G    A   
Sbjct: 742 GFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALIL 801

Query: 194 FEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYA 244
           +E M ++ +    V++  +L        ++   + F  + E   +      +  M+    
Sbjct: 802 YEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLG 861

Query: 245 RNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE----EAARLFIEMPERNPVSWT 299
           R GR+ +A+   ++MPI   V  W A++ A      ++     A RLF E+  +NP  + 
Sbjct: 862 RAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLF-ELDPQNPGPYV 920

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNI 326
            M + Y    +  E   +   M  K +
Sbjct: 921 IMSNIYAAAGRWKEVEDIRQMMKMKGV 947



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 196/449 (43%), Gaps = 62/449 (13%)

Query: 270 MIAAYVQRGQIEE---AARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
           ++  Y + G +++   A +LF EMPERN  +W TMI  Y R+    E  RL         
Sbjct: 112 ILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYG------- 164

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
                         RM  +    DK     V+   + ++      ++  ++   +  +N 
Sbjct: 165 --------------RMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSV--VKAGLNC 208

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446
           ++     ++ GYA+   MDDAV   +E+ +  + V+WNA+I+G+++     +A  IF  M
Sbjct: 209 NLFVGGALVDGYARFGWMDDAVTSLDEI-EGTSVVTWNAVIAGYVKILSWEEAWGIFDRM 267

Query: 447 TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI 506
            + G   D+ T A AL  C  L +   G+Q+H   I  G+  D FVGN+LI MYAKC   
Sbjct: 268 LKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDE 327

Query: 507 QNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
           ++   +F +    + ++WNS+I+  A  G+  +A+ LF  M   G   +      +L A 
Sbjct: 328 ESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMAS 387

Query: 567 SHVG---------------LVDGGLKLFECMTEVYAIEPLVEH---------------YA 596
           + +                L++  + L   + ++Y+   +VE                Y 
Sbjct: 388 AGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYN 447

Query: 597 CMIDLLSRAGRLDEAFEMVKGMK----IKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSE 652
            ++    + G+ +EA E+   M+    I+P+   + TLL  C   +N   GR     L  
Sbjct: 448 ALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIR 507

Query: 653 LEPQKTSCYAL-LSNMHAEAGRWDEVEKV 680
               K       L +M++E GR +  +++
Sbjct: 508 ANITKNIIVETELVHMYSECGRLNYAKEI 536



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 109/221 (49%), Gaps = 10/221 (4%)

Query: 385 NKDIVTWNTMIAGYAQIRQMDD---AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALK 441
           N D      ++  YA+   +DD   A K+FEEM   RN  +WN +I  + + + +++ L+
Sbjct: 103 NPDAYLMTKILMLYARSGCLDDLCYARKLFEEM-PERNLTAWNTMILAYARVDDYMEVLR 161

Query: 442 IFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYA 501
           ++  M   G  +D  T    + AC  +  +   RQ+    +K+G   +LFVG +L+  YA
Sbjct: 162 LYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYA 221

Query: 502 KCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIG 561
           + G + +A     + +   V++WN++IAGY    +  EA  +F+ M+  GV PD  TF  
Sbjct: 222 RFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFAS 281

Query: 562 VLSACSHVGLVDGG----LKLFEC--MTEVYAIEPLVEHYA 596
            L  C  +   DGG     KL  C    + +    L++ YA
Sbjct: 282 ALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYA 322


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 255/818 (31%), Positives = 407/818 (49%), Gaps = 127/818 (15%)

Query: 29  GRVEEAIKIFSQM----SQKNTVTYNSMISA----------------------------- 55
           G  E+A+K++SQM     Q N +TY S++ A                             
Sbjct: 9   GYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVE 68

Query: 56  ------YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
                 Y K G ++DA+ +F++M +RN++SW  MI G  H  + +EA   F +M    F 
Sbjct: 69  TALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFI 128

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKL 162
           P+ +++  ++      G LE  +E+     N     D    NA+V  YAK G+ ++A+ +
Sbjct: 129 PNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVV 188

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAW 222
            D M  ++I SW  M+ G  ++G    A   F  ME    +     L  Y+ + +  +  
Sbjct: 189 FDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLP---NLTTYLSILNASA-- 243

Query: 223 KFFQKIPEQNVVSWV--------------------TMLSGYARNGRMLEARRLFDQMPIR 262
                I     + WV                     ++  YA+ G + +AR +FD M  R
Sbjct: 244 -----ITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDR 298

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRL- 317
           +V++WNAMI    Q G   EA  +F++M +     +  ++ ++++ +V     +  + + 
Sbjct: 299 DVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVH 358

Query: 318 ---LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ--CGR 372
              ++     ++   +A +  Y++   +D+A  IFDK+   +V  WN MI G AQ  CGR
Sbjct: 359 KHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGR 418

Query: 373 MDEAINLFRQM-------------------VNKDIVTW-------------------NTM 394
             EA++LF QM                   V ++ + W                   N +
Sbjct: 419 --EALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGNAL 476

Query: 395 IAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
           +  YA+      A ++F++M   RN  +W  +ISG  Q+    +A  +F+ M +EG   D
Sbjct: 477 VHMYAKCGNTMYAKQVFDDM-VERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPD 535

Query: 455 HSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
            +T    LSACA   AL+  +++H  A+ +G V+DL VGN+L+ MYAKCG + +A  +F 
Sbjct: 536 ATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFD 595

Query: 515 DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574
           D    DV SW  +I G A +G   +A+ LF +M +EG  P+  +F+ VLSACSH GLVD 
Sbjct: 596 DMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDE 655

Query: 575 GLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGAC 634
           G + F  +T+ Y IEP +EHY CM+DLL RAG+L+EA   +  M I+P    WG LLGAC
Sbjct: 656 GRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGAC 715

Query: 635 RMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPG 694
             + N+++   A ++  +L+P+  S Y LLSN++A  G W++   VR  M+  G +K+PG
Sbjct: 716 VTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPG 775

Query: 695 CSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            SWIEV NQIH+F+ GD     + EI   LK L  +++
Sbjct: 776 RSWIEVDNQIHSFVVGDTSHPESKEIYAKLKDLIKRLK 813



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 127/460 (27%), Positives = 216/460 (46%), Gaps = 61/460 (13%)

Query: 270 MIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARRL---LDQMP 322
           MI  Y + G  E+A +++ +M     + N +++ +++        L   +++   + Q  
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 323 YK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
           ++ ++  +TA+++ YV+   +D+A  IFDK+   +V+ W VMI G A  GR  EA + F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 382 QM-----------------------------------VNK----DIVTWNTMIAGYAQIR 402
           QM                                   VN     D+   N ++  YA+  
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
            +DDA  +F+ M   R+  SW  +I G  Q+    +A  +F+ M + G   + +T    L
Sbjct: 181 SIDDARVVFDGM-VERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSIL 239

Query: 463 SACA--HLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVD 520
           +A A     AL+  +++H  A K+G+++DL VGN+LI MYAKCG I +A L+F      D
Sbjct: 240 NASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRD 299

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE 580
           VISWN++I G A NG   EA  +F +M  EG  PD  T++ +L+     G  +   ++ +
Sbjct: 300 VISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHK 359

Query: 581 CMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNI 640
              EV  +  L    A  + +  R G +D+A  +   + ++ N   W  ++G        
Sbjct: 360 HAVEVGLVSDLRVGSA-FVHMYIRCGSIDDAQLIFDKLAVR-NVTTWNAMIGGVAQQ--- 414

Query: 641 KLGRIAVEKLSELE-----PQKTSCYALLS-NMHAEAGRW 674
           K GR A+    ++      P  T+   +LS N+  EA  W
Sbjct: 415 KCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEW 454



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 141/588 (23%), Positives = 239/588 (40%), Gaps = 107/588 (18%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ---- 74
           N  +    KSG +++A  +F  M +++  ++  MI   A++GR  +A  LF QM +    
Sbjct: 170 NALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCL 229

Query: 75  RNLVSWNSMI-------AGYLHNDKVKEARELFDKM-FRPDLFSWALMITCYTRKGELEK 126
            NL ++ S++        G L  + VKE  +   K  F  DL     +I  Y + G ++ 
Sbjct: 230 PNLTTYLSILNASAITSTGAL--EWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDD 287

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV----SWNSMLSGYT 182
           AR +FD + ++ D   WNAM+ G A+ G  +EA  +   M  +  V    ++ S+L+ + 
Sbjct: 288 ARLVFDGMCDR-DVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHV 346

Query: 183 KNGEMHLASKFFEAMEERDVVS----WNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
             G      +  +   E  +VS     +  +  Y+    +D A   F K+  +NV +W  
Sbjct: 347 STGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNA 406

Query: 239 MLSGYARNGRMLEARRLFDQMP--------------------------IRNVVAW----- 267
           M+ G A+     EA  LF QM                           ++ V ++     
Sbjct: 407 MIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAG 466

Query: 268 -------NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
                  NA++  Y + G    A ++F +M ERN  +WT MI G  +     EA  L  Q
Sbjct: 467 LVDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQ 526

Query: 321 MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH--------DVVCWNVMIKGYAQCGR 372
           M  + I          +       A +   ++ +H        D+   N ++  YA+CG 
Sbjct: 527 MLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGS 586

Query: 373 MDEAINLFRQMVNKDIVTWNTMIAGYAQI-RQMDDAVKIFEEMGKRRNTVSWNALISGFL 431
           +D+A  +F  M+ +D+ +W  MI G AQ  R +D                          
Sbjct: 587 VDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLD-------------------------- 620

Query: 432 QNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG-RQIHHLAIKSGYVNDL 490
                  AL +FV M  EG K +  +    LSAC+H   +  G RQ   L    G    +
Sbjct: 621 -------ALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTM 673

Query: 491 FVGNSLITMYAKCGRIQNAE--LLFKDADPVDVISWNSLIAGYAINGN 536
                ++ +  + G+++ A+  +L    +P D   W +L+      GN
Sbjct: 674 EHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDA-PWGALLGACVTYGN 720


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 191/468 (40%), Positives = 302/468 (64%), Gaps = 1/468 (0%)

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR-GQIEEAARLFIEMPERNPVSWTTMID 303
           R+G +  A R+F  M  +N + WN+++    +   ++ EA +LF E+PE +  S+  M+ 
Sbjct: 73  RSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLS 132

Query: 304 GYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVM 363
            YVR    ++A+   D+MP+K+ A+   MI+GY +   M++A ++F  +   + V WN M
Sbjct: 133 CYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAM 192

Query: 364 IKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
           I GY +CG +++A + F+    + +V W  MI GY + ++++ A  +F++M   +N V+W
Sbjct: 193 ISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTW 252

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
           NA+ISG+++N    D LK+F  M +EG + + S L+ AL  C+ L+ALQLGRQIH +  K
Sbjct: 253 NAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSK 312

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
           S   ND+    SLI+MY KCG + +A  LF+     DV++WN++I+GYA +GNA +A+ L
Sbjct: 313 STLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCL 372

Query: 544 FEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLS 603
           F EM+   + PD +TF+ VL AC+H GLV+ G+  FE M   Y +EP  +HY CM+DLL 
Sbjct: 373 FREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLG 432

Query: 604 RAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYAL 663
           RAG+L+EA ++++ M  +P+A ++GTLLGACR+H+N++L   A EKL +L  Q  + Y  
Sbjct: 433 RAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQ 492

Query: 664 LSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD 711
           L+N++A   RW++V +VR  M+ S   K PG SWIE++N++H F S D
Sbjct: 493 LANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSD 540



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/404 (29%), Positives = 206/404 (50%), Gaps = 45/404 (11%)

Query: 5   LKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND 64
           L+SIGN  + +       +       +  +  +     Q      N +I+   ++G ++ 
Sbjct: 20  LRSIGNPDTILVESCSSSSCSSPEPSLVRSDYLTKPSDQDQIFPLNKIIARCVRSGDIDG 79

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHN-DKVKEARELFDKMFRPDLFSWALMITCYTRKGE 123
           A ++F  M  +N ++WNS++ G   +  ++ EA +LFD++  P                 
Sbjct: 80  ALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEP----------------- 122

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK 183
                          DT  +N M++ Y +  N+ +A+   D MP K+  SWN+M++GY +
Sbjct: 123 ---------------DTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYAR 167

Query: 184 NGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGY 243
            GEM  A + F +M E++ VSWN M+ GY+E  DL+ A  FF+  P + VV+W  M++GY
Sbjct: 168 RGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGY 227

Query: 244 ARNGRMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSW 298
            +  ++  A  +F  M + +N+V WNAMI+ YV+  + E+  +LF  M E     N    
Sbjct: 228 MKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGL 287

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYK-----NIAAQTAMISGYVQNKRMDEANQIFDKIG 353
           ++ + G   ++ L   R+ + Q+  K     ++ A T++IS Y +   + +A ++F+ + 
Sbjct: 288 SSALLGCSELSALQLGRQ-IHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMK 346

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI-VTWNTMIA 396
             DVV WN MI GYAQ G  D+A+ LFR+M++  I   W T +A
Sbjct: 347 KKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVA 390



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 108/329 (32%), Positives = 170/329 (51%), Gaps = 41/329 (12%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN-GEMHLASKFFEAMEERDV 202
           N ++A   + G+ + A ++   M +KN ++WNS+L G +K+   M  A + F+ + E D 
Sbjct: 65  NKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDT 124

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR 262
            S+N+ML  YV   + + A  FF ++P ++  SW TM++GYAR G M +AR LF  M  +
Sbjct: 125 FSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEK 184

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
           N V+WNAMI+ Y++ G +E+A+  F   P R  V+WT MI GY++  K++ A  +   M 
Sbjct: 185 NEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMT 244

Query: 323 Y-KNIAAQTAMISGYVQNKRMDEANQIF-------------------------------- 349
             KN+    AMISGYV+N R ++  ++F                                
Sbjct: 245 VNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGR 304

Query: 350 --DKIGTHDVVCWNV-----MIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIR 402
              +I +   +C +V     +I  Y +CG + +A  LF  M  KD+V WN MI+GYAQ  
Sbjct: 305 QIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHG 364

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFL 431
             D A+ +F EM   +    W   ++  L
Sbjct: 365 NADKALCLFREMIDNKIRPDWITFVAVLL 393



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 120/426 (28%), Positives = 200/426 (46%), Gaps = 58/426 (13%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL 88
            R+ EA ++F ++ + +T +YN M+S Y +N     A+  F++MP ++  SWN+MI GY 
Sbjct: 107 SRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYA 166

Query: 89  HNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVA 148
              ++++ARELF  M   +  SW  MI+ Y   G+LEKA   F + P +   A W AM+ 
Sbjct: 167 RRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVA-WTAMIT 225

Query: 149 GYAKIGNYNEAKKLL-DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----V 203
           GY K      A+ +  D   +KN+V+WN+M+SGY +N       K F AM E  +     
Sbjct: 226 GYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSS 285

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARNGRMLEARRLFDQM 259
             +  L G  EL  L    +  Q + +     +V +  +++S Y + G + +A +LF+ M
Sbjct: 286 GLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVM 345

Query: 260 PIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----------------------------- 290
             ++VVAWNAMI+ Y Q G  ++A  LF EM                             
Sbjct: 346 KKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGM 405

Query: 291 -----------PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQN 339
                       E  P  +T M+D   R  KL+EA +L+  MP++  AA    + G  + 
Sbjct: 406 AYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRV 465

Query: 340 KRMDE----ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMI 395
            +  E    A +   ++ + +   +  +   YA   R ++   + ++M   ++V     +
Sbjct: 466 HKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVK----V 521

Query: 396 AGYAQI 401
            GY+ I
Sbjct: 522 PGYSWI 527


>gi|115474659|ref|NP_001060926.1| Os08g0131000 [Oryza sativa Japonica Group]
 gi|42408463|dbj|BAD09644.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50725835|dbj|BAD33365.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113622895|dbj|BAF22840.1| Os08g0131000 [Oryza sativa Japonica Group]
 gi|215704880|dbj|BAG94908.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215712334|dbj|BAG94461.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 674

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 232/628 (36%), Positives = 355/628 (56%), Gaps = 13/628 (2%)

Query: 81  NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
           N+++  Y    ++++A+ LFD+M   D+ SW  ++T Y   G+L  AR +FD +P + + 
Sbjct: 42  NALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMP-RRNA 100

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM--E 198
             WNA+++ Y +      A  L   MP+KN VS+ +++SG  K   +H A   +E M  +
Sbjct: 101 PSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEMPWQ 160

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
            RD V  N ++ GY+ + +L  A + F+ +  ++V+SW  M+ G  ++G + EARR+FD 
Sbjct: 161 WRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFDA 220

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMIDGYVRIAKLDEARR- 316
           MP RNVV+W +MI  YV+RG   +   LF+ M  E   V+ TT+       A    AR  
Sbjct: 221 MPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASLAREG 280

Query: 317 -----LLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC 370
                L+  M ++ +I    ++I  Y +   M +A + FD +   D+V WN +I GY Q 
Sbjct: 281 IQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDIVSWNSLITGYVQH 340

Query: 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
             ++EA  LF+ M  KD V+W +M+ G+A    M ++V++FE+M   ++ V+W A+IS F
Sbjct: 341 DMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQM-PVKDEVAWTAIISSF 399

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
           + N  +L A++ F  M+QEG K +    +C LSA A LA L  GRQ H  +I  G+V D 
Sbjct: 400 ITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQAHAYSINMGWVFDS 459

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME 550
            V  SL++MYAKCGR+  A  +F       +I+ NS+I  +  +G   +A+KLF +M   
Sbjct: 460 AVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFVQHGFVEDALKLFTKMQNA 519

Query: 551 GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDE 610
           G  P+ VTF+G+L+ C+  G V  G   FE M  VY +EP  EHY CM+DLL RAG L E
Sbjct: 520 GYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGRAGLLAE 579

Query: 611 AFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAE 670
           A EM+  M    ++  W  LL A  +H N+   +IA +KL E +P   + Y +LS M + 
Sbjct: 580 ALEMINSMPQNDHSDAWAALLSASSLHSNLAFAKIAAQKLLEKDPYDATAYTVLSRMFSS 639

Query: 671 AGRWDEVEKVRVSMEGSGAQKQPGCSWI 698
           AG  DE E ++V    + A K+PG S I
Sbjct: 640 AGMEDE-EMLKVVQLSNLASKRPGYSLI 666



 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 138/504 (27%), Positives = 255/504 (50%), Gaps = 49/504 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +T  G+ GR+ +A  +F QM  ++ +++ ++++AYA  G +  AR +F+ MP+RN  
Sbjct: 42  NALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNAP 101

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK- 137
           SWN++++ YL   + + A  LF KM   +  S+  +I+   +   L +A  +++ +P + 
Sbjct: 102 SWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEMPWQW 161

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            D    NA++AGY ++G    A ++ + M  ++++SW++M+ G  K+G +  A + F+AM
Sbjct: 162 RDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFDAM 221

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS---------------- 241
            ER+VVSW  M+ GYV+          F  +  + V    T LS                
Sbjct: 222 PERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASLAREGI 281

Query: 242 -----------------------GYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
                                   Y+R G M++A+R FD M  +++V+WN++I  YVQ  
Sbjct: 282 QIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDIVSWNSLITGYVQHD 341

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
            +EEA  LF  M +++ VSWT+M+ G+     + E+  L +QMP K+  A TA+IS ++ 
Sbjct: 342 MVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMPVKDEVAWTAIISSFIT 401

Query: 339 NKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVT 390
           N     A + F ++       + + ++ ++   A    +++        +N     D   
Sbjct: 402 NGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQAHAYSINMGWVFDSAV 461

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
             ++++ YA+  ++ +A  +F  +    + ++ N++I+ F+Q+ F  DALK+F  M   G
Sbjct: 462 HTSLVSMYAKCGRLAEAYHVFSSISN-PSLIAINSMITAFVQHGFVEDALKLFTKMQNAG 520

Query: 451 KKADHSTLACALSACAHLAALQLG 474
            K +H T    L+ CA    +Q G
Sbjct: 521 YKPNHVTFLGILTGCARAGFVQQG 544



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 110/462 (23%), Positives = 192/462 (41%), Gaps = 92/462 (19%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + +  +  L K G V EA ++F  M ++N V++ SMI  Y K G   D   LF  M +
Sbjct: 195 VISWSAMVDGLCKHGSVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRR 254

Query: 75  RNL--------VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEK 126
             +        V+ ++  A  L  + ++    +    F  D+F    +I  Y+R G +  
Sbjct: 255 EGVQVNTTTLSVALDACAAASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVD 314

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           A+  FD +  K D   WN+++ GY +     EA  L   M  K+ VSW SM+ G+   G 
Sbjct: 315 AKRAFDCMQQK-DIVSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGW 373

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV------------- 233
           M  + + FE M  +D V+W  ++  ++   D  SA ++F ++ ++               
Sbjct: 374 MRESVELFEQMPVKDEVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSA 433

Query: 234 -------------------VSWV-------TMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
                              + WV       +++S YA+ GR+ EA  +F  +   +++A 
Sbjct: 434 LASLAMLNQGRQAHAYSINMGWVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAI 493

Query: 268 NAMIAAYVQRGQIEEAARLFIEMP------------------------------------ 291
           N+MI A+VQ G +E+A +LF +M                                     
Sbjct: 494 NSMITAFVQHGFVEDALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRP 553

Query: 292 ----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA-AQTAMISGYVQNKRMDEAN 346
               E NP  +T M+D   R   L EA  +++ MP  + + A  A++S    +  +  A 
Sbjct: 554 VYGVEPNPEHYTCMVDLLGRAGLLAEALEMINSMPQNDHSDAWAALLSASSLHSNLAFAK 613

Query: 347 QIFDKI---GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
               K+     +D   + V+ + ++  G  DE +    Q+ N
Sbjct: 614 IAAQKLLEKDPYDATAYTVLSRMFSSAGMEDEEMLKVVQLSN 655


>gi|325260820|gb|ADZ04639.1| hypothetical protein [Oryza glaberrima]
          Length = 674

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 229/629 (36%), Positives = 355/629 (56%), Gaps = 15/629 (2%)

Query: 81  NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
           N+++  Y    ++++A+ LFD+M   D+ SW  ++T Y   G+L  AR +FD +P + + 
Sbjct: 42  NALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMP-RRNA 100

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM--E 198
             WNA+++ Y +      A  L   MP+KN VS+ +++SG  K   +H A   +E M  +
Sbjct: 101 PSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEMPWQ 160

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
            RD V  N ++ GY+ + +L  A + F+ +  ++V+SW  M+ G  ++G + EARR+FD 
Sbjct: 161 WRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFDA 220

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLD-- 312
           MP RNVV+W +MI  YV+RG   +   LF+ M       N  + +  +D    +A L   
Sbjct: 221 MPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDA-CAVASLARE 279

Query: 313 --EARRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ 369
             +   L+  M ++ +I    ++I  Y +   M +A + FD +   D+V WN +I GY Q
Sbjct: 280 GIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDIVSWNSLITGYVQ 339

Query: 370 CGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
              ++EA  LF+ M  KD V+W +M+ G+A    M ++V++FE+M   ++ V+W A+IS 
Sbjct: 340 HDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQM-PVKDEVAWTAIISS 398

Query: 430 FLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND 489
           F+ N  +L A++ F  M+QEG K +    +C LSA A LA L  GRQ H  +I  G+V D
Sbjct: 399 FITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQAHAYSINMGWVFD 458

Query: 490 LFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549
             V  SL++MYAKCGR+  A  +F       +I+ NS+I  +  +G   +A+KLF +M  
Sbjct: 459 SAVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFVQHGFVEDALKLFTKMQN 518

Query: 550 EGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLD 609
            G  P+ VTF+G+L+ C+  G V  G   FE M  VY +EP  EHY CM+DLL RAG L 
Sbjct: 519 AGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGRAGLLA 578

Query: 610 EAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHA 669
           EA EM+  M    ++  W  LL A  +H N+   +IA +KL E +P   + Y +LS M +
Sbjct: 579 EALEMINSMPQNDHSDAWAALLSASSLHSNLAFAKIAAQKLLEKDPYDATAYTVLSRMFS 638

Query: 670 EAGRWDEVEKVRVSMEGSGAQKQPGCSWI 698
            AG  DE E ++V    + A K+PG S I
Sbjct: 639 SAGMEDE-EMLKVVQLSNLASKRPGYSLI 666



 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 138/504 (27%), Positives = 255/504 (50%), Gaps = 49/504 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +T  G+ GR+ +A  +F QM  ++ +++ ++++AYA  G +  AR +F+ MP+RN  
Sbjct: 42  NALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNAP 101

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK- 137
           SWN++++ YL   + + A  LF KM   +  S+  +I+   +   L +A  +++ +P + 
Sbjct: 102 SWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEMPWQW 161

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            D    NA++AGY ++G    A ++ + M  ++++SW++M+ G  K+G +  A + F+AM
Sbjct: 162 RDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFDAM 221

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS---------------- 241
            ER+VVSW  M+ GYV+          F  +  + V    T LS                
Sbjct: 222 PERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAVASLAREGI 281

Query: 242 -----------------------GYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
                                   Y+R G M++A+R FD M  +++V+WN++I  YVQ  
Sbjct: 282 QIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDIVSWNSLITGYVQHD 341

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
            +EEA  LF  M +++ VSWT+M+ G+     + E+  L +QMP K+  A TA+IS ++ 
Sbjct: 342 MVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMPVKDEVAWTAIISSFIT 401

Query: 339 NKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVT 390
           N     A + F ++       + + ++ ++   A    +++        +N     D   
Sbjct: 402 NGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQAHAYSINMGWVFDSAV 461

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
             ++++ YA+  ++ +A  +F  +    + ++ N++I+ F+Q+ F  DALK+F  M   G
Sbjct: 462 HTSLVSMYAKCGRLAEAYHVFSSISN-PSLIAINSMITAFVQHGFVEDALKLFTKMQNAG 520

Query: 451 KKADHSTLACALSACAHLAALQLG 474
            K +H T    L+ CA    +Q G
Sbjct: 521 YKPNHVTFLGILTGCARAGFVQQG 544



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 109/462 (23%), Positives = 191/462 (41%), Gaps = 92/462 (19%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + +  +  L K G V EA ++F  M ++N V++ SMI  Y K G   D   LF  M +
Sbjct: 195 VISWSAMVDGLCKHGSVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRR 254

Query: 75  RNL--------VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEK 126
             +        V+ ++     L  + ++    +    F  D+F    +I  Y+R G +  
Sbjct: 255 EGVQVNTTTLSVALDACAVASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVD 314

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           A+  FD +  K D   WN+++ GY +     EA  L   M  K+ VSW SM+ G+   G 
Sbjct: 315 AKRAFDCMQQK-DIVSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGW 373

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV------------- 233
           M  + + FE M  +D V+W  ++  ++   D  SA ++F ++ ++               
Sbjct: 374 MRESVELFEQMPVKDEVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSA 433

Query: 234 -------------------VSWV-------TMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
                              + WV       +++S YA+ GR+ EA  +F  +   +++A 
Sbjct: 434 LASLAMLNQGRQAHAYSINMGWVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAI 493

Query: 268 NAMIAAYVQRGQIEEAARLFIEMP------------------------------------ 291
           N+MI A+VQ G +E+A +LF +M                                     
Sbjct: 494 NSMITAFVQHGFVEDALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRP 553

Query: 292 ----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA-AQTAMISGYVQNKRMDEAN 346
               E NP  +T M+D   R   L EA  +++ MP  + + A  A++S    +  +  A 
Sbjct: 554 VYGVEPNPEHYTCMVDLLGRAGLLAEALEMINSMPQNDHSDAWAALLSASSLHSNLAFAK 613

Query: 347 QIFDKI---GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
               K+     +D   + V+ + ++  G  DE +    Q+ N
Sbjct: 614 IAAQKLLEKDPYDATAYTVLSRMFSSAGMEDEEMLKVVQLSN 655


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 239/737 (32%), Positives = 396/737 (53%), Gaps = 34/737 (4%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR--NLVSWNSMIAG 86
           G   +A ++F +   +N  T+N+MI A   + R++DA KLF++MP R  + VSW +MI+G
Sbjct: 57  GLTHDAFQVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISG 116

Query: 87  YLHNDKVKEARELFDKMFRP--------DLFSWALMITCYTRKGELEKARELFDLLPN-- 136
           Y  N     + E F  M R         D FS+  ++      G+   A +L  L+    
Sbjct: 117 YSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLG 176

Query: 137 -KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
              +T   N++V  Y K G+ + A+ +   +   ++  WNSM+ GY++    + A + F 
Sbjct: 177 FGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFN 236

Query: 196 AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARN----- 246
            M ERD VSWN ++  + +          F ++  Q    N +++ ++LS  A       
Sbjct: 237 RMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKW 296

Query: 247 GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYV 306
           G  L AR L  +  + ++V  N +I  Y + G ++ A R+F  + E + +SW ++I G V
Sbjct: 297 GAHLHARILRMEHSL-DLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVV 355

Query: 307 RIAKLDEARRLLDQMPYKNIAAQTAMI-------SG--YVQNKRMDEANQIFDKIGTHDV 357
                ++A  L +QM   ++     ++       SG  Y     +     I   +G+   
Sbjct: 356 HFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAP 415

Query: 358 VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
           V  N +I  YA+CG  D+A  +FR M  ++ ++W  MI  +++   +  A   F+ M   
Sbjct: 416 V-GNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMM-PE 473

Query: 418 RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI 477
           RN V+WN+++S ++QN F  + LK++V M   G + D  T   ++ ACA LA ++LG Q+
Sbjct: 474 RNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQV 533

Query: 478 HHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNA 537
              A K G   ++ V NS++TMY++CG I+ A+  F   D  D+ISWN+++A +A NG  
Sbjct: 534 VTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLG 593

Query: 538 TEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYAC 597
            + I  FE+M+     P+ ++++ VLS CSH+GLV  G   F+ MT V+ I P  EH++C
Sbjct: 594 IKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSC 653

Query: 598 MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK 657
           M+DLL RAG L++A ++++GM  KPNA +W  LLG+CR+H +++L   A +KL EL+ + 
Sbjct: 654 MVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALLGSCRVHHDLRLAETAAKKLMELDVEG 713

Query: 658 TSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRT 717
           +  Y LLSNM++E+G  D V  +R  M+  G +   GCSWIEV N++H F   +    + 
Sbjct: 714 SEGYVLLSNMYSESGELDNVADMRKLMKVKGIRTSRGCSWIEVDNRVHVFTVDETSHPQI 773

Query: 718 AEICNTLKTLAAQIRNT 734
            E+   L+ +   I +T
Sbjct: 774 KEVYLKLEEMMKMIEDT 790



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 93/199 (46%), Gaps = 43/199 (21%)

Query: 472 QLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG--------------------------- 504
            + R++H   I SG  + LF+ N+L+ MY+ CG                           
Sbjct: 25  HIARKLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQVFQETHHRNIFTWNTMIRAL 84

Query: 505 ----RIQNAELLFKDADPV---DVISWNSLIAGYAINGNATEAIKLFEEMVME----GVA 553
               R+ +AE LF D  PV   D +SW ++I+GY+ NG  + + + F  M+ +    G  
Sbjct: 85  VSSSRMSDAEKLF-DEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKN 143

Query: 554 PDPVTFIGVLSACSHVGLVDGGLKLFECMTEV-YAIEPLVEHYACMIDLLSRAGRLDEAF 612
            DP +F  V+ AC  +G     ++L   ++++ + +E  +++   ++ +  + G +D A 
Sbjct: 144 YDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQN--SVVGMYVKCGDVDLAE 201

Query: 613 EMVKGMKIKPNAGIWGTLL 631
            +   ++ +P+   W +++
Sbjct: 202 TVFFDIE-RPSLFCWNSMI 219


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 238/749 (31%), Positives = 408/749 (54%), Gaps = 33/749 (4%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIF-SQMSQKNTVTYNSMISAYAKNGRVNDARKLFE 70
            S VF QN  +      G + +A ++    ++  N +T+N M++ YAK GR++DA +LF 
Sbjct: 56  ASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFG 115

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELE 125
           +MP R++ SWN++++GY  + +   + E F  M R     P+ F+ A  +      G   
Sbjct: 116 RMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHS 175

Query: 126 KARELFDLL---PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYT 182
            A +L  ++    +++D+    A+V  + + G  + A +L   +    +   NSML+GY 
Sbjct: 176 LALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYV 235

Query: 183 KNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVT 238
           K   +  A + F++M ERDVVSWN+M+    +   +  A      +  + V     ++ +
Sbjct: 236 KTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTS 295

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNV-----VAWNAMIAAYVQRGQIEEAARLFIEMPER 293
            L+  AR   +   ++L  Q+ IRN+        +A++  Y + G  +EA  +F  + +R
Sbjct: 296 SLTACARLSSLRWGKQLHAQV-IRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDR 354

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA----AQTAMISGYVQNKRMD-----E 344
           N V+WT +I G+++     E+  L +QM  + +     A   +ISG     RMD     +
Sbjct: 355 NNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCS--RMDLCLGRQ 412

Query: 345 ANQIFDKIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQ 403
            + +  K G    VV  N +I  YA+C  +  A  +FR M  KDIV+W +MI  Y+Q+  
Sbjct: 413 LHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGN 472

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF-VLMTQEGKKADHSTLACAL 462
           +  A + F+ M ++ N ++WNA++  ++Q+    D L+++ V++++E  + D  T     
Sbjct: 473 VAKAREFFDGMSEK-NVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLF 531

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
             CA L A +LG QI    +K G + D  V N++ITMY+KCGRI  A  +F   +  D++
Sbjct: 532 KGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIV 591

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           SWN++I GY+ +G   +AI++F++++  G  PD ++++ VLS CSH GLV  G   F+ M
Sbjct: 592 SWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMM 651

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKL 642
              + I P +EH++CM+DLL RAG L EA +++  M +KP A +WG LL AC++H N +L
Sbjct: 652 KRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNEL 711

Query: 643 GRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKN 702
             +A + + EL+   +  Y L++ ++A+AG+ D+  ++R  M   G +K PG SW+EV N
Sbjct: 712 AELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDN 771

Query: 703 QIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           ++H F + D    +   I   L  L  +I
Sbjct: 772 KVHVFKADDVSHPQVLAIRKKLDELMEKI 800



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 106/266 (39%), Gaps = 38/266 (14%)

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA-ELLFKDA 516
            A AL +C    AL   R +H   +  G  + +F+ N+L+  Y  CG + +A  LL  D 
Sbjct: 27  FADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDI 86

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA----------------------- 553
              +VI+ N ++ GYA  G  ++A++LF  M    VA                       
Sbjct: 87  AHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFL 146

Query: 554 ---------PDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSR 604
                    P+  T    + +C  +G     L+L   M + +  +   E  A ++D+  R
Sbjct: 147 SMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLA-MVQKFDSQDDSEVAAALVDMFVR 205

Query: 605 AGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALL 664
            G +D A  +   +K +P      ++L        +     A+E    +  +    + ++
Sbjct: 206 CGAVDLASRLFVRIK-EPTMFCRNSMLAGYVKTYGVDH---ALELFDSMPERDVVSWNMM 261

Query: 665 SNMHAEAGRWDEVEKVRVSMEGSGAQ 690
            +  +++GR  E   + V M+  G +
Sbjct: 262 VSALSQSGRVREALDMVVDMQSKGVR 287


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 235/652 (36%), Positives = 352/652 (53%), Gaps = 64/652 (9%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE--AMEERD 201
           N ++  Y+K    N A+ L D +P  +IV+  ++++ Y+  G++ L+ K F    +  RD
Sbjct: 52  NRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRD 111

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFD 257
            V +N M+  Y    D  +A + F  +   N      ++ ++L   A      +  +   
Sbjct: 112 SVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLH 171

Query: 258 QMPIRNVVAW-----NAMIAAYVQ---------RGQIEEAARLFIEMPERNPVSWTTMID 303
              +++   +     NA+I++YV+            + EA +LF EMP R+ +SWTT+I 
Sbjct: 172 CAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIIT 231

Query: 304 GYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV------ 357
           GYV+   LD A+  L+    K   A  AMISGY       EA ++F K+    +      
Sbjct: 232 GYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFT 291

Query: 358 ------VCWNV-------------------------------MIKGYAQCGRMDEAINLF 380
                 VC N                                +I  Y +CG++D A  +F
Sbjct: 292 FTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIF 351

Query: 381 RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
            +M  +D+V+WN +++GY  +R MD+A   F EM   +N +SW  +ISG  Q  F  +AL
Sbjct: 352 NKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEM-PEKNILSWIIMISGLAQIGFAEEAL 410

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500
           K F  M  +G +      A A+ +C+ L +L+ GRQ+H   ++ GY + L  GN+LITMY
Sbjct: 411 KFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMY 470

Query: 501 AKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
           A+CG +  A  LF +   VD ISWN++IA    +G  T+AI+LFEEM+ EG+ PD ++F+
Sbjct: 471 ARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFL 530

Query: 561 GVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKI 620
            V+SACSH GLV  G K F+ M  VY + P  EHYA +IDLL RAG+  EA E+++ M  
Sbjct: 531 TVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPF 590

Query: 621 KPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKV 680
           +P A IW  LL  CR+H NI LG  A E+L EL+PQ    Y LLSNM+A AG+W+++ KV
Sbjct: 591 EPGAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKV 650

Query: 681 RVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           R  M   G +K+PGCSWIEV+N++H+FL GD       +I N L+ L  ++R
Sbjct: 651 RKLMRDRGVKKEPGCSWIEVENKVHSFLVGDANHPEVRQIYNYLEQLVLEMR 702



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 157/608 (25%), Positives = 268/608 (44%), Gaps = 118/608 (19%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP--QRN 76
           N+ I    KS ++  A  +F ++ Q + V   ++I+AY+  G +  +RK+F   P   R+
Sbjct: 52  NRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRD 111

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFD 132
            V +N+MI  Y HN     A ELF  M    FRPD +++  ++       E EK  +   
Sbjct: 112 SVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLH 171

Query: 133 LLPNKED----TACWNAMVAGYAKIGNYN---------EAKKLLDAMPSKNIVSWNSMLS 179
               K      T+  NA+++ Y K              EA+KL D MP+++ +SW ++++
Sbjct: 172 CAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIIT 231

Query: 180 GYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VS 235
           GY KN ++  A +F     ++  V+WN M+ GY        A++ F+K+    +     +
Sbjct: 232 GYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFT 291

Query: 236 WVTMLS-----GYARNGRMLEA---RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF 287
           + +++S     G  R G+ + A   + + +  P   +   NA+I  Y + G+++ A  +F
Sbjct: 292 FTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIF 351

Query: 288 IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347
            +MPER+ VSW  ++ GYV +  +DEA+   ++MP KNI +   MISG  Q    +EA +
Sbjct: 352 NKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALK 411

Query: 348 IFDKIGTHD------------VVC---------------------------WNVMIKGYA 368
            F+++                + C                            N +I  YA
Sbjct: 412 FFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYA 471

Query: 369 QCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
           +CG +D A  LF  M   D ++WN MIA   Q  Q   A+++FEEM K            
Sbjct: 472 RCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLK------------ 519

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ----IHHLAIKS 484
                               EG   D  +    +SAC+H   ++ GR+    +H++    
Sbjct: 520 --------------------EGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNV---Y 556

Query: 485 GYVNDLFVGNSLITMYAKCGRIQNAE-----LLFKDADPVDVISWNSLIAGYAINGNATE 539
           G   D      +I +  + G+   A+     + F+   P+    W +L+AG  I+GN   
Sbjct: 557 GVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPI----WEALLAGCRIHGNIDL 612

Query: 540 AIKLFEEM 547
            I+  E +
Sbjct: 613 GIEAAERL 620



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 151/315 (47%), Gaps = 27/315 (8%)

Query: 5   LKSIGNKGSYVFN--QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRV 62
           LK++ N    V     N  IT   K G+V+ A +IF++M +++ V++N ++S Y     +
Sbjct: 316 LKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCM 375

Query: 63  NDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCY 118
           ++A+  F +MP++N++SW  MI+G       +EA + F++M    F P  +++A  I   
Sbjct: 376 DEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISC 435

Query: 119 TRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN 175
           +  G L+  R+L   +     +   +  NA++  YA+ G  + A  L   MP  + +SWN
Sbjct: 436 SVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWN 495

Query: 176 SMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKI--- 228
           +M++   ++G+   A + FE M +     D +S+  ++        +    K+F  +   
Sbjct: 496 AMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNV 555

Query: 229 ----PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQ---- 279
               P++    +  ++    R G+  EA+ + + MP       W A++A     G     
Sbjct: 556 YGVNPDEE--HYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLG 613

Query: 280 IEEAARLFIEMPERN 294
           IE A RLF   P+ +
Sbjct: 614 IEAAERLFELKPQHD 628



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 2/110 (1%)

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
           +  L R +H   I SG+     + N LI +Y+K  ++  A  LF +    D+++  +LIA
Sbjct: 28  SYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIA 87

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
            Y+  G+   + K+F +  +     D V +  +++A SH       ++LF
Sbjct: 88  AYSAAGDLKLSRKIFSDTPLG--MRDSVFYNAMITAYSHNHDGHAAIELF 135


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 238/749 (31%), Positives = 408/749 (54%), Gaps = 33/749 (4%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIF-SQMSQKNTVTYNSMISAYAKNGRVNDARKLFE 70
            S VF QN  +      G + +A ++    ++  N +T+N M++ YAK GR++DA +LF 
Sbjct: 36  ASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFG 95

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELE 125
           +MP R++ SWN++++GY  + +   + E F  M R     P+ F+ A  +      G   
Sbjct: 96  RMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHS 155

Query: 126 KARELFDLL---PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYT 182
            A +L  ++    +++D+    A+V  + + G  + A +L   +    +   NSML+GY 
Sbjct: 156 LALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYV 215

Query: 183 KNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVT 238
           K   +  A + F++M ERDVVSWN+M+    +   +  A      +  + V     ++ +
Sbjct: 216 KTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTS 275

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNV-----VAWNAMIAAYVQRGQIEEAARLFIEMPER 293
            L+  AR   +   ++L  Q+ IRN+        +A++  Y + G  +EA  +F  + +R
Sbjct: 276 SLTACARLSSLRWGKQLHAQV-IRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDR 334

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA----AQTAMISGYVQNKRMD-----E 344
           N V+WT +I G+++     E+  L +QM  + +     A   +ISG     RMD     +
Sbjct: 335 NNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCS--RMDLCLGRQ 392

Query: 345 ANQIFDKIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQ 403
            + +  K G    VV  N +I  YA+C  +  A  +FR M  KDIV+W +MI  Y+Q+  
Sbjct: 393 LHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGN 452

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF-VLMTQEGKKADHSTLACAL 462
           +  A + F+ M ++ N ++WNA++  ++Q+    D L+++ V++++E  + D  T     
Sbjct: 453 VAKAREFFDGMSEK-NVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLF 511

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
             CA L A +LG QI    +K G + D  V N++ITMY+KCGRI  A  +F   +  D++
Sbjct: 512 KGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIV 571

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           SWN++I GY+ +G   +AI++F++++  G  PD ++++ VLS CSH GLV  G   F+ M
Sbjct: 572 SWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMM 631

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKL 642
              + I P +EH++CM+DLL RAG L EA +++  M +KP A +WG LL AC++H N +L
Sbjct: 632 KRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNEL 691

Query: 643 GRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKN 702
             +A + + EL+   +  Y L++ ++A+AG+ D+  ++R  M   G +K PG SW+EV N
Sbjct: 692 AELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDN 751

Query: 703 QIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           ++H F + D    +   I   L  L  +I
Sbjct: 752 KVHVFKADDVSHPQVLAIRKKLDELMEKI 780



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 106/266 (39%), Gaps = 38/266 (14%)

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA-ELLFKDA 516
            A AL +C    AL   R +H   +  G  + +F+ N+L+  Y  CG + +A  LL  D 
Sbjct: 7   FADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDI 66

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA----------------------- 553
              +VI+ N ++ GYA  G  ++A++LF  M    VA                       
Sbjct: 67  AHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFL 126

Query: 554 ---------PDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSR 604
                    P+  T    + +C  +G     L+L   M + +  +   E  A ++D+  R
Sbjct: 127 SMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLA-MVQKFDSQDDSEVAAALVDMFVR 185

Query: 605 AGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALL 664
            G +D A  +   +K +P      ++L        +     A+E    +  +    + ++
Sbjct: 186 CGAVDLASRLFVRIK-EPTMFCRNSMLAGYVKTYGVDH---ALELFDSMPERDVVSWNMM 241

Query: 665 SNMHAEAGRWDEVEKVRVSMEGSGAQ 690
            +  +++GR  E   + V M+  G +
Sbjct: 242 VSALSQSGRVREALDMVVDMQSKGVR 267


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 244/746 (32%), Positives = 405/746 (54%), Gaps = 29/746 (3%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIF-SQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           S VF QN  +      G + +A  +   ++++ N +T+N M++ YAK G ++DA +LF +
Sbjct: 58  SVVFLQNTLLHAYLSCGALSDARNLLRDEITEPNVITHNIMMNGYAKLGSLSDAVELFGR 117

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEK 126
           MP R++ SWN++++GY  + +   A ++F  M +     P+ F++  ++      G  E 
Sbjct: 118 MPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEV 177

Query: 127 ARELFDLLP---NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK 183
           A +L  LL    +++D     A+V    + G  + A K    + +  I+  NSML GY K
Sbjct: 178 ALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAK 237

Query: 184 NGEMHLASKFFEAMEERDVVSWNLMLDGYVE----LDDLDSAWKFFQKIPEQNVVSWVTM 239
           +  +  A + F++M ERDVVSWN+++    +     + LD       K    +  ++ + 
Sbjct: 238 SHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSS 297

Query: 240 LSGYARNGRMLEARRLFDQMPIRNV-----VAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
           L+  AR   +   ++L  Q+ IRN+        +AM+  Y + G  +EA R+F  + +RN
Sbjct: 298 LTACARLSSLEWGKQLHVQV-IRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRN 356

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA----AQTAMISGYVQNKRMDEANQIFD 350
            VSWT +I G+++     E+  L +QM  + +A    A   +ISG      +   +Q+  
Sbjct: 357 SVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHS 416

Query: 351 ---KIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDD 406
              K G T  VV  N +I  YA+CG +  A  +F  M  +DIV+W  MI  Y+Q+  +  
Sbjct: 417 LCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAK 476

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV-LMTQEGKKADHSTLACALSAC 465
           A + F++M  R N ++WNA++  ++Q+    D LK++  ++T++    D  T       C
Sbjct: 477 AREFFDDMSTR-NVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGC 535

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
           A + A +LG QI    +K G + D  V N++ITMY+KCGRI  A   F      D++SWN
Sbjct: 536 ADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWN 595

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
           ++I GY+ +G   +AI++F++++ +G  PD ++++ VLS CSH GLV+ G   F+ M   
Sbjct: 596 AMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRD 655

Query: 586 YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI 645
           + I P +EH++CM+DLL RAG L EA  ++  M +KP A +WG LL AC+ H N  L  +
Sbjct: 656 HNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAEL 715

Query: 646 AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705
           A + L +L+   +  Y LL+ M+A+AG+ D+  +VR  M   G +K PG SW+EV N++H
Sbjct: 716 AAKHLFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGIKKSPGYSWMEVNNRVH 775

Query: 706 TFLSGDPKQCRTAEICNTLKTLAAQI 731
            F + D    +   I   L  L  +I
Sbjct: 776 VFKAEDVSHPQVIAIREKLDELMEKI 801



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 110/486 (22%), Positives = 208/486 (42%), Gaps = 104/486 (21%)

Query: 11  KGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDAR---- 66
           K   +  +N  +    KS  V+ A++IF  M +++ V++N +ISA +K+GRV +A     
Sbjct: 221 KNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVV 280

Query: 67  -----------------------------------KLFEQMPQRNLVSWNSMIAGYLHND 91
                                              ++   +P  +    ++M+  Y    
Sbjct: 281 DMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCG 340

Query: 92  KVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD------------------- 132
             KEA+ +F  +   +  SW ++I  + + G   ++ ELF+                   
Sbjct: 341 CFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLIS 400

Query: 133 --------LLPNKEDTACW-----------NAMVAGYAKIGNYNEAKKLLDAMPSKNIVS 173
                    L ++  + C            N++++ YAK GN   A+ + + M  ++IVS
Sbjct: 401 GCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVS 460

Query: 174 WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK-IPEQN 232
           W  M++ Y++ G +  A +FF+ M  R+V++WN ML  Y++    +   K +   + E++
Sbjct: 461 WTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKD 520

Query: 233 V----VSWVTMLSGYARNGRMLEARRLFDQMP--------IRNVVAWNAMIAAYVQRGQI 280
           V    V++VT+  G A  G    A +L DQ+         I +    NA+I  Y + G+I
Sbjct: 521 VIPDWVTYVTLFRGCADIG----ANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRI 576

Query: 281 EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK----NIAAQTAMISGY 336
            EA + F  +  ++ VSW  MI GY +     +A  + D +  K    +  +  A++SG 
Sbjct: 577 SEARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGC 636

Query: 337 VQNKRMDEANQIFDKIG-THDVVC----WNVMIKGYAQCGRMDEAINLFRQMVNKDIV-T 390
             +  ++E    FD +   H++      ++ M+    + G + EA NL  +M  K     
Sbjct: 637 SHSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEV 696

Query: 391 WNTMIA 396
           W  +++
Sbjct: 697 WGALLS 702



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 115/267 (43%), Gaps = 40/267 (14%)

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD-- 515
           LA AL +C   +AL   R +H   I  G  + +F+ N+L+  Y  CG + +A  L +D  
Sbjct: 28  LADALRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEI 87

Query: 516 ---------------------ADPV---------DVISWNSLIAGYAINGNATEAIKLFE 545
                                +D V         DV SWN++++GY  +G    A+ +F 
Sbjct: 88  TEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFV 147

Query: 546 EMVMEGVA-PDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI-EPLVEHYACMIDLLS 603
            M   G + P+  TF  V+ +C  +G  +  L+L   +++  +  +P V+    ++D+L 
Sbjct: 148 SMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQ--TALVDMLV 205

Query: 604 RAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYAL 663
           R G +D A +    +K          L+G  + H        A+E    +  +    + +
Sbjct: 206 RCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDH----ALEIFKSMPERDVVSWNM 261

Query: 664 LSNMHAEAGRWDEVEKVRVSMEGSGAQ 690
           + +  +++GR  E   + V M G G +
Sbjct: 262 VISALSKSGRVREALDMVVDMHGKGVR 288


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 243/674 (36%), Positives = 357/674 (52%), Gaps = 60/674 (8%)

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           F+P  +    +I  Y +  +L  A  LFD +  + D      ++A ++  GN N A+++ 
Sbjct: 46  FKPRGYILNRLIDVYCKSSDLVSAHHLFDEI-RQPDIVARTTLIAAHSSAGNSNLAREIF 104

Query: 164 DAMP--SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA 221
            A P   ++ V +N+M++GY+ N +   A + F     RD++      D +     L + 
Sbjct: 105 FATPLGIRDTVCYNAMITGYSHNNDGFGAIELF-----RDLLRNGFRPDNFTFTSVLGAL 159

Query: 222 WKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIE 281
               +   +   +    + SG      +L A        + +V    A          + 
Sbjct: 160 ALIVEDEKQCQQIHCAVVKSGSGFVTSVLNA--------LLSVFVKCASSPLVSSSSLMA 211

Query: 282 EAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKR 341
            A +LF EM ER+ +SWTTMI GYVR  +LD AR+ LD M  K + A  AMISGYV +  
Sbjct: 212 AARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGF 271

Query: 342 MDEANQIFDKI---------GTHDVV---CWNV--MIKG--------------------- 366
             EA ++F K+          T+  V   C N    + G                     
Sbjct: 272 FLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLS 331

Query: 367 --------YAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRR 418
                   Y +CG++DEA  +F QM  KD+V+WN +++GY    ++D+A   FEEM   R
Sbjct: 332 VNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEM-PER 390

Query: 419 NTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIH 478
           N ++W  +ISG  QN F  ++LK+F  M  EG +      A A+ ACA LAAL  GRQ+H
Sbjct: 391 NLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLH 450

Query: 479 HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNAT 538
              ++ G+ + L  GN+LITMYAKCG ++ A  LF     +D +SWN++IA    +G+  
Sbjct: 451 AQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGA 510

Query: 539 EAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACM 598
           +A++LFE M+ E + PD +TF+ VLS CSH GLV+ G + F+ M+ +Y I P  +HYA M
Sbjct: 511 QALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARM 570

Query: 599 IDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKT 658
           IDLL RAG+  EA +M++ M ++P   IW  LL  CR+H N+ LG  A E+L EL PQ  
Sbjct: 571 IDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHD 630

Query: 659 SCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTA 718
             Y LLSNM+A  GRWD+V KVR  M   G +K+PGCSWIEV+N++H FL  D       
Sbjct: 631 GTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVFLVDDIVHPEVQ 690

Query: 719 EICNTLKTLAAQIR 732
            + N L+ L  ++R
Sbjct: 691 AVYNYLEELGLKMR 704



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/428 (25%), Positives = 205/428 (47%), Gaps = 49/428 (11%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKV 93
           A K+F +M++++ +++ +MI+ Y +NG ++ AR+  + M ++ +V+WN+MI+GY+H+   
Sbjct: 213 ARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFF 272

Query: 94  KEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDLLPNKE-------DTAC 142
            EA E+F KM+    + D F++  +++     G     +++   +   E         + 
Sbjct: 273 LEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSV 332

Query: 143 WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV 202
            NA+   Y K G  +EA+++ + MP K++VSWN++LSGY   G +  A  FFE M ER++
Sbjct: 333 NNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNL 392

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQN-------------VVSWVTMLSGYARNGRM 249
           ++W +M+ G  +    + + K F ++  +                +W+  L     +GR 
Sbjct: 393 LTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAAL----MHGRQ 448

Query: 250 LEA---RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYV 306
           L A   R  FD     ++ A NA+I  Y + G +E A  LF+ MP  + VSW  MI    
Sbjct: 449 LHAQLVRLGFDS----SLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALG 504

Query: 307 RIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIGTHDVVC--- 359
           +     +A  L + M  ++I         ++S       ++E ++ F  +     +C   
Sbjct: 505 QHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGE 564

Query: 360 --WNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAGYAQIRQMDDAV----KIFE 412
             +  MI    + G+  EA ++   M V      W  ++AG      MD  +    ++FE
Sbjct: 565 DHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFE 624

Query: 413 EMGKRRNT 420
            M +   T
Sbjct: 625 LMPQHDGT 632



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 168/345 (48%), Gaps = 26/345 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N   T   K G+V+EA ++F+QM  K+ V++N+++S Y   GR+++A+  FE+MP+RNL+
Sbjct: 334 NALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLL 393

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLL 134
           +W  MI+G   N   +E+ +LF++M    F P  +++A  I        L   R+L   L
Sbjct: 394 TWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQL 453

Query: 135 PN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
                    +  NA++  YAK G    A  L   MP  + VSWN+M++   ++G    A 
Sbjct: 454 VRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQAL 513

Query: 192 KFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKI-------PEQNVVSWVTML 240
           + FE M + D+    +++  +L        ++   ++F+ +       P ++   +  M+
Sbjct: 514 ELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGED--HYARMI 571

Query: 241 SGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQ----IEEAARLFIEMPERNP 295
               R G+  EA+ + + MP+      W A++A     G     I+ A RLF  MP+ + 
Sbjct: 572 DLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHDG 631

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340
            ++  + + Y  + + D+  ++   M  K +  +       V+NK
Sbjct: 632 -TYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENK 675



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 34/135 (25%)

Query: 465 CAH-LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD-------- 515
           C H   +  + R +H   I SG+    ++ N LI +Y K   + +A  LF +        
Sbjct: 24  CPHNPMSYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVA 83

Query: 516 ----------------------ADPV---DVISWNSLIAGYAINGNATEAIKLFEEMVME 550
                                 A P+   D + +N++I GY+ N +   AI+LF +++  
Sbjct: 84  RTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRN 143

Query: 551 GVAPDPVTFIGVLSA 565
           G  PD  TF  VL A
Sbjct: 144 GFRPDNFTFTSVLGA 158


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/647 (34%), Positives = 358/647 (55%), Gaps = 76/647 (11%)

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P   +T   N ++  Y K G  + A+KL D M  +NI SWNS++  +TK+G +  A   F
Sbjct: 49  PFASETFIQNRLIDVYGKCGCVDVARKLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIF 108

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK--------------------------- 227
           E M + D  SWN M+ G+ +    D A  +F +                           
Sbjct: 109 EKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLK 168

Query: 228 --------IPEQNVVSWVTMLSG----YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
                   +   N +S V M S     Y++ GR+  A+ +FD+M +R+ V+WN++I  Y 
Sbjct: 169 LGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYE 228

Query: 276 QRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
           Q G ++EA ++F+EM     E + V+  +++     I+ + E +++              
Sbjct: 229 QNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQI-------------- 274

Query: 332 MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTW 391
               + +  + DE          +D++  N ++  YA+C R++EA  +F  M  + +V+ 
Sbjct: 275 ----HARVVKCDEFR--------NDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSE 322

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
            +M++GYA+  ++  A  +F  M   ++ ++WNALI+G  QN  + +AL +F L+ +E  
Sbjct: 323 TSMVSGYAKASKVKVARYMFSNM-MVKDVITWNALIAGCTQNGENEEALILFRLLKRESV 381

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV------NDLFVGNSLITMYAKCGR 505
              H T    L+ACA+LA LQLGRQ H   +K G+       +D+FVGNSLI MY KCG 
Sbjct: 382 WPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGS 441

Query: 506 IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565
           ++N   +F+     D +SWN++I GYA NG   +A+++F +M+  G APD VT IGVL A
Sbjct: 442 VENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCA 501

Query: 566 CSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAG 625
           CSH GL+D G   F  MT  + + PL +HY CM+DLL RAG L+EA  +++ M ++P+A 
Sbjct: 502 CSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAI 561

Query: 626 IWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685
           +WG+LL AC++H+NI+LG   V+KL E++P+ +  Y LLSNM+AE   W  V +VR  M 
Sbjct: 562 VWGSLLAACKVHRNIQLGEYVVKKLLEVDPENSGPYVLLSNMYAENRDWKNVVRVRKLMR 621

Query: 686 GSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
             G  KQPGCSWIE++ +++ F+  D +  R  EI   L+T+  Q++
Sbjct: 622 QRGVVKQPGCSWIEIQGELNVFMVKDKRHARKKEIYMVLRTILQQMK 668



 Score =  201 bits (512), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 159/598 (26%), Positives = 269/598 (44%), Gaps = 110/598 (18%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
            S  F QN+ I   GK G V+ A K+F +M ++N  ++NS+I A+ K+G ++DA  +FE+
Sbjct: 51  ASETFIQNRLIDVYGKCGCVDVARKLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEK 110

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKA 127
           MPQ +  SWNSMI+G+  + +  EA   F +M    F  + +S+   ++      +L+  
Sbjct: 111 MPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLG 170

Query: 128 RELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
            ++  L+       D    +A+V  Y+K G    A+ + D M  ++ VSWNS+++ Y +N
Sbjct: 171 SQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQN 230

Query: 185 GEMHLASKFF-------------------------EAMEE---------------RDVVS 204
           G +  A K F                          A++E                D++ 
Sbjct: 231 GPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLIL 290

Query: 205 WNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV 264
            N +LD Y + + ++ A   F  +P ++VVS  +M+SGYA+  ++  AR +F  M +++V
Sbjct: 291 GNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDV 350

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWT--TMIDGYVRIAKLDEARRLLDQ 320
           + WNA+IA   Q G+ EEA  LF  +   +  P  +T   +++    +A L   R+    
Sbjct: 351 ITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQ---- 406

Query: 321 MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF 380
                 A    +  G+            F      DV   N +I  Y +CG ++    +F
Sbjct: 407 ------AHSHVLKHGFR-----------FQYGEDSDVFVGNSLIDMYMKCGSVENGCRVF 449

Query: 381 RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
           + M+ KD V+WN MI GYA                                QN F   AL
Sbjct: 450 QHMLEKDCVSWNAMIVGYA--------------------------------QNGFGNKAL 477

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGR-QIHHLAIKSGYVNDLFVGNSLITM 499
           ++F  M + G+  DH T+   L AC+H   L  GR     +  + G +        ++ +
Sbjct: 478 EVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDL 537

Query: 500 YAKCGRIQNAELLFKDAD-PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
             + G ++ A+ L ++     D I W SL+A   ++ N    I+L E +V + +  DP
Sbjct: 538 LGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVHRN----IQLGEYVVKKLLEVDP 591



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 112/478 (23%), Positives = 219/478 (45%), Gaps = 59/478 (12%)

Query: 4   SLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVN 63
           SL    N  S V+  +  +    K GRVE A  +F +M+ ++ V++NS+I+ Y +NG V+
Sbjct: 175 SLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVD 234

Query: 64  DARKLFEQMPQRNL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALM 114
           +A K+F +M +  +    V+  S+++       +KE +++  ++     FR DL     +
Sbjct: 235 EALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNAL 294

Query: 115 ITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSW 174
           +  Y +   + +AR +FD++P +       +MV+GYAK      A+ +   M  K++++W
Sbjct: 295 LDMYAKCNRINEARIIFDMMPIRS-VVSETSMVSGYAKASKVKVARYMFSNMMVKDVITW 353

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKF------ 224
           N++++G T+NGE   A   F  ++   V     ++  +L+    L DL    +       
Sbjct: 354 NALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLK 413

Query: 225 ----FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQI 280
               FQ   + +V    +++  Y + G +    R+F  M  ++ V+WNAMI  Y Q G  
Sbjct: 414 HGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFG 473

Query: 281 EEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGY 336
            +A  +F +M E     + V+   ++        LDE R       ++++ AQ  ++   
Sbjct: 474 NKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYY-----FRSMTAQHGLMP-- 526

Query: 337 VQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMI 395
                          +  H    +  M+    + G ++EA NL  +M +  D + W +++
Sbjct: 527 ---------------LKDH----YTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLL 567

Query: 396 AG---YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
           A    +  I+  +  VK   E+    N+  +  L + + +N    + +++  LM Q G
Sbjct: 568 AACKVHRNIQLGEYVVKKLLEVDP-ENSGPYVLLSNMYAENRDWKNVVRVRKLMRQRG 624



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 163/368 (44%), Gaps = 39/368 (10%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +    K  R+ EA  IF  M  ++ V+  SM+S YAK  +V  AR +F  M  ++++
Sbjct: 292 NALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVI 351

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLL 134
           +WN++IAG   N + +EA  LF  + R    P  +++  ++       +L+  R+    +
Sbjct: 352 TWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHV 411

Query: 135 ---------PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
                        D    N+++  Y K G+     ++   M  K+ VSWN+M+ GY +NG
Sbjct: 412 LKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNG 471

Query: 186 ----EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV-----SW 236
                + +  K  E+ E  D V+   +L        LD    +F+ +  Q+ +      +
Sbjct: 472 FGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHY 531

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAY-----VQRGQIEEAARLFIEM 290
             M+    R G + EA+ L ++M ++ + + W +++AA      +Q G  E   +  +E+
Sbjct: 532 TCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVHRNIQLG--EYVVKKLLEV 589

Query: 291 PERNPVSWTTMIDGY---------VRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKR 341
              N   +  + + Y         VR+ KL   R ++ Q     I  Q  +    V++KR
Sbjct: 590 DPENSGPYVLLSNMYAENRDWKNVVRVRKLMRQRGVVKQPGCSWIEIQGELNVFMVKDKR 649

Query: 342 MDEANQIF 349
                +I+
Sbjct: 650 HARKKEIY 657



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 39/212 (18%)

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
           D S  +  L+ CA   + +   ++H   IKS + ++ F+ N LI +Y KCG +  A  LF
Sbjct: 18  DSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLF 77

Query: 514 ------------------------KDA-------DPVDVISWNSLIAGYAINGNATEAIK 542
                                    DA         VD  SWNS+I+G+  +G   EA+ 
Sbjct: 78  DRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALV 137

Query: 543 LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL-FECMTEVYAIEPLVEHY--ACMI 599
            F +M   G   +  +F   LSAC+  GL D  LKL  +  + VY    L + Y  + ++
Sbjct: 138 YFAQMHGHGFLVNEYSFGSALSACA--GLQD--LKLGSQIHSLVYRSNYLSDVYMGSALV 193

Query: 600 DLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           D+ S+ GR++ A  +   M ++     W +L+
Sbjct: 194 DMYSKCGRVEYAQSVFDEMTVRSRVS-WNSLI 224


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 244/750 (32%), Positives = 403/750 (53%), Gaps = 66/750 (8%)

Query: 47  VTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR- 105
           +  N +I  YAKNG +  ARK+F+ +  ++ VSW +MI+G+  N   +EA  LF +M   
Sbjct: 148 IISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTA 207

Query: 106 ---PDLFSWALMITCYTRKGELEKARELFDLL---PNKEDTACWNAMVAGYAKIGNYNEA 159
              P  + ++ +++  T+    +   +L  L+    +  +T   NA+V  Y+++ N+  A
Sbjct: 208 GIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSA 267

Query: 160 KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME--------------------- 198
           +K+   M SK+ VS+NS++SG  + G    A + F  M+                     
Sbjct: 268 EKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASN 327

Query: 199 ------------------ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
                               D++    +LD YV   D+ +A + F     +NVV W  ML
Sbjct: 328 GALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVML 387

Query: 241 SGYARNGRMLEARRLFDQMPIRNVV----AWNAMIAAYVQRGQIEEAARLFIEMPER--- 293
             + +   + E+ R+F QM I+ ++     + +++      G ++   ++  ++ +    
Sbjct: 388 VAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQ 447

Query: 294 -NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
            N    + +ID Y +  KLD A  +L  +   ++ + TA+ISGY Q+    EA + F ++
Sbjct: 448 FNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEM 507

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQM--------VNKDIVTWNTMIAGYAQIRQM 404
               +   N+            +A+N  RQ+         ++D+   N +++ YA+  ++
Sbjct: 508 LNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRI 567

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSA 464
            +A   FE++   ++++SWN LISGF Q+ +  DALK+F  M +   +A   T   A+SA
Sbjct: 568 KEAYLEFEKI-DAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSA 626

Query: 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
            A++A ++ G+QIH + IK G+ +D+ V N+LIT YAKCG I++A   F +    + +SW
Sbjct: 627 AANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSW 686

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           N++I GY+ +G   EA+ LFE+M   G  P+ VTF+GVLSACSHVGLV  GL  FE M++
Sbjct: 687 NAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSK 746

Query: 585 VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
            + + P   HYAC++DL+SRAG L  A + ++ M I+P+A IW TLL AC +H+N+++G 
Sbjct: 747 EHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGE 806

Query: 645 IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQI 704
            A + L ELEP+ ++ Y LLSNM+A +G+WD  ++ R  M   G +K+PG SWIEVKN +
Sbjct: 807 FAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSV 866

Query: 705 HTFLSGD---PKQCRTAEICNTLKTLAAQI 731
           H F  GD   P   +  E    L   AA+I
Sbjct: 867 HAFYVGDRLHPLADKIYEFLAELNKKAAEI 896



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 128/280 (45%), Gaps = 35/280 (12%)

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
           V  N ++  Y  +  +D  VK+FE+M   R+  SW+ +ISGF++ +     L +F  M +
Sbjct: 46  VLCNKLVDVYFALGDLDGVVKVFEDM-PNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIE 104

Query: 449 EGKKADHSTLACALSACA-HLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
           E       + A  L AC+ H   ++   QIH   I  G +    + N LI +YAK G I 
Sbjct: 105 ENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLII 164

Query: 508 NAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
           +A  +F +    D +SW ++I+G++ NG   EAI LF EM   G+ P P  F  VLS C+
Sbjct: 165 SARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCT 224

Query: 568 HVGLVDGGLKL------FECMTEVYAIEPLVEHYACM----------------------- 598
            + L D G +L      +    E Y    LV  Y+ M                       
Sbjct: 225 KIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNS 284

Query: 599 -IDLLSRAGRLDEAFEMVKGMK---IKPNAGIWGTLLGAC 634
            I  L++ G  D A E+   MK   +KP+     +LL AC
Sbjct: 285 LISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSAC 324



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 59/122 (48%)

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
           M   G  A+  T    L  C +  +L   +++H   +K G+ N+  + N L+ +Y   G 
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 506 IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565
           +     +F+D     V SW+ +I+G+     +   + LF  M+ E V+P  ++F  VL A
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 566 CS 567
           CS
Sbjct: 121 CS 122


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 241/738 (32%), Positives = 401/738 (54%), Gaps = 63/738 (8%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKE 95
           KI       + +  N +I  Y+KNG V+ A+ +FE++  ++ VSW +MI+G   N +  E
Sbjct: 137 KIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDE 196

Query: 96  ARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVA 148
           A  LF +M +    P  + ++ +++  T+    +   +L   +       +T   NA+V 
Sbjct: 197 AILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVT 256

Query: 149 GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME---------- 198
            Y++ GN   A+++   M  ++ +S+NS++SG  + G    A + FE M+          
Sbjct: 257 LYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVT 316

Query: 199 -----------------------------ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP 229
                                          D++    +LD YV+  D+++A ++F    
Sbjct: 317 VASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTE 376

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAAR 285
            +NVV W  ML  Y + G + E+  +F QM I     N   + +++      G ++   +
Sbjct: 377 TENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQ 436

Query: 286 LFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKR 341
           +  ++ +     N    + +ID Y +  +LD AR +L ++  +++ + TAMI+GY Q+  
Sbjct: 437 IHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDL 496

Query: 342 MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM--------VNKDIVTWNT 393
             EA ++F ++    +   N+            +A+N  +Q+         ++D+   N 
Sbjct: 497 FAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNA 556

Query: 394 MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA 453
           +++ YA+  +  DA   FE++  + N +SWNALISGF Q+    +AL++F  M Q G +A
Sbjct: 557 LVSLYARCGRAQDAYLAFEKIDAKDN-ISWNALISGFAQSGHCEEALQVFSQMNQAGVEA 615

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
           +  T   A+SA A+ A ++ G+QIH + IK+GY ++    N LIT+Y+KCG I++A+  F
Sbjct: 616 NLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREF 675

Query: 514 KDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVD 573
            +    +V+SWN++I GY+ +G  +EA+ LFEEM   G+ P+ VTF+GVLSACSHVGLV+
Sbjct: 676 FEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVN 735

Query: 574 GGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
            GL  F  M++ + + P  EHY C++DLL RA  L  A E ++ M I+P+A IW TLL A
Sbjct: 736 EGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSA 795

Query: 634 CRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQP 693
           C +H+NI++G  A   L ELEP+ ++ Y LLSNM+A +G+WD  ++ R  M+  G +K+P
Sbjct: 796 CTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEP 855

Query: 694 GCSWIEVKNQIHTFLSGD 711
           G SWIEVKN IH F  GD
Sbjct: 856 GRSWIEVKNSIHAFFVGD 873



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 133/491 (27%), Positives = 238/491 (48%), Gaps = 35/491 (7%)

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGR 248
           L ++ F++  + + V  + ++D Y+   ++D+A K F  IP  NV  W  ++SG      
Sbjct: 32  LHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKL 91

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRG-------QIEEA--ARLFIEMPERNPVSWT 299
             +   LF  M   NV    +  A+ ++         Q+ E   A++       +P+   
Sbjct: 92  ASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCN 151

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
            +ID Y +   +D A+ + +++  K+  +  AMISG  QN R DEA  +F ++    V+ 
Sbjct: 152 PLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIP 211

Query: 360 WNVMIKG-YAQCGRMDEAINLFR--QMVNKDIVTW---------NTMIAGYAQIRQMDDA 407
              +     + C +    I LF+  + ++  IV W         N ++  Y++   +  A
Sbjct: 212 TPYVFSSVLSACTK----IELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAA 267

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
            +IF +M  RR+ +S+N+LISG  Q  F   AL++F  M  +  K D  T+A  LSACA 
Sbjct: 268 EQIFSKM-HRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACAS 326

Query: 468 LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSL 527
           + A   G+Q+H   IK G  +DL +  SL+ +Y KC  I+ A   F   +  +V+ WN +
Sbjct: 327 VGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVM 386

Query: 528 IAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYA 587
           +  Y   GN +E+  +F +M +EG+ P+  T+  +L  C+ +G +D G ++    T+V  
Sbjct: 387 LVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIH---TQVIK 443

Query: 588 IEPLVEHYAC--MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI 645
                  Y C  +ID+ ++ G LD A  +++ ++ + +   W  ++     H    L   
Sbjct: 444 SGFQFNVYVCSVLIDMYAKHGELDTARGILQRLR-EEDVVSWTAMIAGYTQHD---LFAE 499

Query: 646 AVEKLSELEPQ 656
           A++   E+E Q
Sbjct: 500 ALKLFQEMENQ 510



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 149/621 (23%), Positives = 278/621 (44%), Gaps = 88/621 (14%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S  F  N  +T   + G +  A +IFS+M +++ ++YNS+IS  A+ G  + A +LFE+M
Sbjct: 246 SETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKM 305

Query: 73  P----QRNLVSWNSMI-------AGYLHNDKVKEARELFDKM-FRPDLFSWALMITCYTR 120
                + + V+  S++       AGY    K K+      KM    DL     ++  Y +
Sbjct: 306 QLDCMKPDCVTVASLLSACASVGAGY----KGKQLHSYVIKMGMSSDLIIEGSLLDLYVK 361

Query: 121 KGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV----SWNS 176
             ++E A E F L    E+   WN M+  Y ++GN +E+  +   M  + ++    ++ S
Sbjct: 362 CFDIETAHEYF-LTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPS 420

Query: 177 MLSGYTKNGEMHLA----SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQN 232
           +L   T  G + L     ++  ++  + +V   ++++D Y +  +LD+A    Q++ E++
Sbjct: 421 ILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREED 480

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMP---IR--------------------------- 262
           VVSW  M++GY ++    EA +LF +M    IR                           
Sbjct: 481 VVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHA 540

Query: 263 ---------NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDE 313
                    ++   NA+++ Y + G+ ++A   F ++  ++ +SW  +I G+ +    +E
Sbjct: 541 QSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEE 600

Query: 314 ARRLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFD---KIG-THDVVCWNVMIK 365
           A ++  QM    + A      + +S       + +  QI     K G   +    NV+I 
Sbjct: 601 ALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLIT 660

Query: 366 GYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVS 422
            Y++CG +++A   F +M  K++V+WN MI GY+Q     +AV +FEEM   G   N V+
Sbjct: 661 LYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVT 720

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEG---KKADHSTLACALSACAHLAALQLGRQ-IH 478
           +  ++S         + L  F  M++E     K +H    C +      A L   R+ I 
Sbjct: 721 FVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEH--YVCVVDLLGRAALLCCAREFIE 778

Query: 479 HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK---DADPVDVISWNSLIAGYAING 535
            + I+     D  +  +L++       I+  E   +   + +P D  ++  L   YA++G
Sbjct: 779 EMPIEP----DAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSG 834

Query: 536 NATEAIKLFEEMVMEGVAPDP 556
                 +  + M   GV  +P
Sbjct: 835 KWDYRDRTRQMMKDRGVKKEP 855



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 100/238 (42%), Gaps = 46/238 (19%)

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
           M + G +A+  T       C +  +L   +++H    KSG+  +  +G+ LI +Y   G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 506 IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565
           + NA  LF D    +V  WN +I+G      A++ + LF  M+ E V PD  TF  VL A
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 566 CSHVGLVDGGLKLFECMTEVYA-------------IEPLVEHYA---------------- 596
           CS      GG   F+   +++A               PL++ Y+                
Sbjct: 121 CS------GGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLF 174

Query: 597 --------CMIDLLSRAGRLDEAFEMVKGMK---IKPNAGIWGTLLGACRMHQNIKLG 643
                    MI  LS+ GR DEA  +   M    + P   ++ ++L AC   +  KLG
Sbjct: 175 LKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLG 232


>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 998

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 242/766 (31%), Positives = 408/766 (53%), Gaps = 66/766 (8%)

Query: 30  RVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLH 89
           ++   I +F    + +    N+++ AY+K   VN A KLF+ M  +NLV+W+SM++ Y H
Sbjct: 59  KIHSKIVVFG-FHKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTH 117

Query: 90  NDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTA 141
           +    EA  LF +  R     P+ +  A ++   T+ G L  A ++  L+      +D  
Sbjct: 118 HSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNPALQIHGLVVKGGYVQDVY 177

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
              +++  Y K    ++A+ L D +  K   +W ++++GY+K G   ++ K F+ M+E  
Sbjct: 178 VCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGH 237

Query: 202 VVSWNLMLDGYVE----LDDLDSAWKFFQKIPEQNVVSWVTMLSG----YARNGRMLEAR 253
           V     +L   +     L  L+   +    +    +V  V+M++G    Y +  ++   R
Sbjct: 238 VCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGR 297

Query: 254 RLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER--NPVSW--TTMIDGYVRIA 309
           +LFD+M  +NVV+W  +IA  +Q     +A  LF+EM     NP ++  T++++    + 
Sbjct: 298 KLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLV 357

Query: 310 KLDEARRLLDQMPYKNIA----AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIK 365
            L++ R++       NI      +  +I  Y +   + +A ++F+ +   D+V +N MI+
Sbjct: 358 ALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIE 417

Query: 366 GYAQCGRMDEAINLFRQM---------------------------------------VNK 386
           GY++  ++ EA++LFR+M                                       V+ 
Sbjct: 418 GYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIKYGVSL 477

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446
           D    + +I  Y++  ++ DA  +FEE+ + ++ V W A+ SG+ Q   + ++LK++  +
Sbjct: 478 DEFAGSALIDVYSKCSRVGDARLVFEEI-QDKDIVVWTAMFSGYTQQSENEESLKLYKCL 536

Query: 447 TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI 506
                K +  T A  ++A +++A+L+ G+Q H+  IK G+ +D FV N+L+ MYAK G I
Sbjct: 537 QMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDDDPFVANTLVDMYAKSGSI 596

Query: 507 QNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
           + A   F   +  D   WNS+IA YA +G A +A+++FE+M+MEG+ P+ VTF+GVLSAC
Sbjct: 597 EEAHKAFISTNWKDTACWNSMIATYAQHGEAEKALQVFEDMIMEGLKPNYVTFVGVLSAC 656

Query: 567 SHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGI 626
           SH GL+D G   F+ M++ + IEP +EHY CM+ LL RAG+L EA E ++ M IK  A +
Sbjct: 657 SHTGLLDLGFDHFDSMSQ-FGIEPGIEHYVCMVSLLGRAGKLYEAKEFIEKMPIKQAAVV 715

Query: 627 WGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEG 686
           W +LL ACR+  N++LG  A E      P  +  Y LLSN+ A  G W  V ++R  M+ 
Sbjct: 716 WRSLLSACRVSGNVELGTYAAEMAISCNPADSGSYVLLSNIFASKGMWVNVRRLREKMDI 775

Query: 687 SGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           SG  K+PGCSWIEV N+IH F++ D     +A I   L  L  QI+
Sbjct: 776 SGVVKEPGCSWIEVNNEIHKFIAKDTAHRDSAPISLVLDNLLLQIK 821


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  404 bits (1038), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/503 (39%), Positives = 313/503 (62%), Gaps = 2/503 (0%)

Query: 231 QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV-QRGQIEEAARLFIE 289
            NV+S   +++ + R+G +  A R+F+ M ++  V WN+M+A Y  +RG+I+ A +LF  
Sbjct: 3   SNVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDR 62

Query: 290 MPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF 349
           +PE +  S+  M+  Y+  A ++ AR   DQMP K+ A+   MISG+ QN  MD+A ++F
Sbjct: 63  IPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELF 122

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVK 409
             +   + V WN MI GY + G +D A  LF     + +V W  MI G+ +  +++ A K
Sbjct: 123 LVMPVRNSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEK 182

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
            FEEM   +N V+WNA+I+G+++N    + LK+F  M + G + + S+L+  L  C++L+
Sbjct: 183 YFEEM-PMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLS 241

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
           AL+LG+Q+H L  KS    ++  G SL++MY KCG +++A  LF      DV++WN++I+
Sbjct: 242 ALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMIS 301

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE 589
           GYA +G   +A+ LF++M  EG+ PD +TF+ VLSAC+H G VD G++ F  M   Y +E
Sbjct: 302 GYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVE 361

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649
              +HY C++DLL R G+L EA +++K M  KP++ I+GTLLGACR+H+N++L   A + 
Sbjct: 362 AKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIHKNLELAEFAAKN 421

Query: 650 LSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLS 709
           L  L+P+  + Y  L+N++A   RWD V  VR SM+ +   K PG SWIEVK+ +H F S
Sbjct: 422 LLNLDPESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSWIEVKSVVHEFRS 481

Query: 710 GDPKQCRTAEICNTLKTLAAQIR 732
           GD      A I   L  L  ++R
Sbjct: 482 GDRIHPELAFIHEKLNELERKMR 504



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 112/321 (34%), Positives = 204/321 (63%), Gaps = 12/321 (3%)

Query: 11  KGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYA-KNGRVNDARKLF 69
           K S V + N+ IT   +SG +  A+++F  M+ K TVT+NSM++ Y+ + G++  AR+LF
Sbjct: 1   KSSNVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLF 60

Query: 70  EQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARE 129
           +++P+ ++ S+N M+A YLHN  V+ AR  FD+M   D  SW  MI+ +++ G +++ARE
Sbjct: 61  DRIPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARE 120

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           LF ++P + ++  WNAM++GY + G+ + AK+L +  P +++V+W +M++G+ K G++ L
Sbjct: 121 LFLVMPVR-NSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIEL 179

Query: 190 ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYAR 245
           A K+FE M  +++V+WN M+ GY+E    ++  K F+++ E     N  S  ++L G   
Sbjct: 180 AEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLG-CS 238

Query: 246 NGRMLEARRLFDQMPIRNVVAWN-----AMIAAYVQRGQIEEAARLFIEMPERNPVSWTT 300
           N   L+  +   Q+  ++ V+WN     ++++ Y + G +E+A +LF+ MP+++ V+W  
Sbjct: 239 NLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNA 298

Query: 301 MIDGYVRIAKLDEARRLLDQM 321
           MI GY +    ++A  L D+M
Sbjct: 299 MISGYAQHGAGEKALYLFDKM 319



 Score =  220 bits (560), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 116/353 (32%), Positives = 207/353 (58%), Gaps = 14/353 (3%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLH-NDKVKEARELFDKM 103
           N ++ N +I+ + ++G +N A ++FE M  +  V+WNSM+AGY +   K+K AR+LFD++
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRI 63

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
             PD+FS+ +M+ CY    ++E AR  FD +P K DTA WN M++G+++ G  ++A++L 
Sbjct: 64  PEPDIFSYNIMLACYLHNADVESARLFFDQMPVK-DTASWNTMISGFSQNGMMDQARELF 122

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWK 223
             MP +N VSWN+M+SGY ++G++ LA + FE    R VV+W  M+ G+++   ++ A K
Sbjct: 123 LVMPVRNSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEK 182

Query: 224 FFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEA 283
           +F+++P +N+V+W  M++GY  N +     +LF +M         + +++ +       A
Sbjct: 183 YFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSA 242

Query: 284 ARLFIEMPE---RNPVSW-----TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG 335
            +L  ++ +   ++PVSW     T+++  Y +   L++A +L   MP K++    AMISG
Sbjct: 243 LKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISG 302

Query: 336 YVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
           Y Q+   ++A  +FDK+       D + +  ++      G +D  I  F  MV
Sbjct: 303 YAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMV 355



 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 120/371 (32%), Positives = 197/371 (53%), Gaps = 72/371 (19%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYT-KNGEMHLASKFFEAMEERDV 202
           N ++  + + G+ N A ++ ++M  K  V+WNSML+GY+ + G++ +A + F+ + E D+
Sbjct: 9   NRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRIPEPDI 68

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR 262
            S+N+ML  Y+   D++SA  FF ++P ++  SW TM+SG+++NG M +AR LF  MP+R
Sbjct: 69  FSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVMPVR 128

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
           N V+WNAMI+ YV+ G ++ A +LF   P R+ V+WT MI G+++  K++ A +  ++MP
Sbjct: 129 NSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMP 188

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFD---------------------------KIG-- 353
            KN+    AMI+GY++N + +   ++F                            K+G  
Sbjct: 189 MKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQ 248

Query: 354 THDVVC-----WNV-----MIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQ 403
            H ++C     WN+     ++  Y +CG +++A  LF  M  KD+VTWN MI+GYAQ   
Sbjct: 249 VHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGA 308

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS 463
            + A+ +F++                                M  EG K D  T    LS
Sbjct: 309 GEKALYLFDK--------------------------------MRDEGMKPDWITFVAVLS 336

Query: 464 ACAHLAALQLG 474
           AC H   + LG
Sbjct: 337 ACNHAGFVDLG 347



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 108/339 (31%), Positives = 180/339 (53%), Gaps = 20/339 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F+ N  +     +  VE A   F QM  K+T ++N+MIS +++NG ++ AR+LF  MP 
Sbjct: 68  IFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVMPV 127

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN VSWN+MI+GY+ +  +  A++LF+      + +W  MIT + + G++E A + F+ +
Sbjct: 128 RNSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEM 187

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSMLSGYTKNGEMHLA 190
           P K +   WNAM+AGY +        KL   M       N  S +S+L G +    + L 
Sbjct: 188 PMK-NLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLG 246

Query: 191 SKFFEAMEERDVVSWNL-----MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR 245
            +  + +  +  VSWN+     +L  Y +  DL+ AWK F  +P+++VV+W  M+SGYA+
Sbjct: 247 KQVHQLI-CKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQ 305

Query: 246 NGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEM-----PERNPV 296
           +G   +A  LFD+M    +    + + A+++A    G ++     F  M      E  P 
Sbjct: 306 HGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPD 365

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG 335
            +T ++D   R  KL EA  L+ +MP+K  +A    + G
Sbjct: 366 HYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLG 404


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  404 bits (1038), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/527 (37%), Positives = 314/527 (59%), Gaps = 2/527 (0%)

Query: 207 LMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA 266
           L+   +V L    S+     +    NV++   +++ Y R G +  A R+F+ M +++ V 
Sbjct: 15  LLTSSFVTLSKYVSSHTHQHEFNNNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVT 74

Query: 267 WNAMIAAYVQR-GQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           WN+++AA+ ++ G  E A +LF ++P+ N VS+  M+  +     + +AR   D MP K+
Sbjct: 75  WNSILAAFAKKPGHFEYARQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKD 134

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
           +A+   MIS   Q   M EA ++F  +   + V W+ M+ GY  CG +D A+  F     
Sbjct: 135 VASWNTMISALAQVGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECFYAAPM 194

Query: 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVL 445
           + ++TW  MI GY +  +++ A ++F+EM  R   V+WNA+I+G+++N    D L++F  
Sbjct: 195 RSVITWTAMITGYMKFGRVELAERLFQEMSMR-TLVTWNAMIAGYVENGRAEDGLRLFRT 253

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
           M + G K +  +L   L  C++L+ALQLG+Q+H L  K    +D   G SL++MY+KCG 
Sbjct: 254 MLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGD 313

Query: 506 IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565
           +++A  LF      DV+ WN++I+GYA +G   +A++LF+EM  EG+ PD +TF+ VL A
Sbjct: 314 LKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLA 373

Query: 566 CSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAG 625
           C+H GLVD G++ F  M   + IE   EHYACM+DLL RAG+L EA +++K M  KP+  
Sbjct: 374 CNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPA 433

Query: 626 IWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685
           I+GTLLGACR+H+N+ L   A + L EL+P   + Y  L+N++A   RWD V  +R SM+
Sbjct: 434 IYGTLLGACRIHKNLNLAEFAAKNLLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMK 493

Query: 686 GSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            +   K PG SWIE+ + +H F S D      A I   LK L  +++
Sbjct: 494 DNNVVKIPGYSWIEINSVVHGFRSSDRLHPELASIHEKLKDLEKKMK 540



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 139/475 (29%), Positives = 220/475 (46%), Gaps = 97/475 (20%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKN-GRVNDARKLFEQMP 73
           V   NK I    + G ++ A+++F  M  K+TVT+NS+++A+AK  G    AR+LFE++P
Sbjct: 41  VIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFEKIP 100

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDL 133
           Q N VS+N M+A + H+  V +AR  FD M   D+ SW  MI+   + G + +AR LF  
Sbjct: 101 QPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSA 160

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
           +P K +   W+AMV+GY   G+ + A +   A P +++++W +M++GY K G + LA + 
Sbjct: 161 MPEK-NCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITGYMKFGRVELAERL 219

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV-------------------- 233
           F+ M  R +V+WN M+ GYVE    +   + F+ + E  V                    
Sbjct: 220 FQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSAL 279

Query: 234 -------------------VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
                               +  +++S Y++ G + +A  LF Q+P ++VV WNAMI+ Y
Sbjct: 280 QLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGY 339

Query: 275 VQRGQIEEAARLFIEMP----------------------------------------ERN 294
            Q G  ++A RLF EM                                         E  
Sbjct: 340 AQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETK 399

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ-NKRMDEAN------- 346
           P  +  M+D   R  KL EA  L+  MP+K   A    + G  + +K ++ A        
Sbjct: 400 PEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLL 459

Query: 347 QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQI 401
           ++   I T  V   NV    YA   R D   ++ R M + ++V     I GY+ I
Sbjct: 460 ELDPTIATGYVQLANV----YAAQNRWDHVASIRRSMKDNNVVK----IPGYSWI 506



 Score =  198 bits (504), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 109/371 (29%), Positives = 189/371 (50%), Gaps = 41/371 (11%)

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW 205
           + + +  +  Y  +        + N+++ N +++ Y + G++  A + FE M+ +  V+W
Sbjct: 16  LTSSFVTLSKYVSSHTHQHEFNNNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTW 75

Query: 206 NLMLDGYV-ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV 264
           N +L  +  +    + A + F+KIP+ N VS+  ML+ +  +  + +AR  FD MP+++V
Sbjct: 76  NSILAAFAKKPGHFEYARQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDV 135

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
            +WN MI+A  Q G + EA RLF  MPE+N VSW+ M+ GYV    LD A       P +
Sbjct: 136 ASWNTMISALAQVGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECFYAAPMR 195

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM- 383
           ++   TAMI+GY++  R++ A ++F ++    +V WN MI GY + GR ++ + LFR M 
Sbjct: 196 SVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTML 255

Query: 384 --------------------------------------VNKDIVTWNTMIAGYAQIRQMD 405
                                                 ++ D     ++++ Y++   + 
Sbjct: 256 ETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLK 315

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
           DA ++F ++  R++ V WNA+ISG+ Q+     AL++F  M +EG K D  T    L AC
Sbjct: 316 DAWELFIQI-PRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLAC 374

Query: 466 AHLAALQLGRQ 476
            H   + LG Q
Sbjct: 375 NHAGLVDLGVQ 385



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 107/358 (29%), Positives = 193/358 (53%), Gaps = 16/358 (4%)

Query: 40  QMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHND-KVKEARE 98
           + +  N +  N +I++Y + G ++ A ++FE M  ++ V+WNS++A +       + AR+
Sbjct: 35  EFNNNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQ 94

Query: 99  LFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNE 158
           LF+K+ +P+  S+ +M+ C+     +  AR  FD +P K D A WN M++  A++G   E
Sbjct: 95  LFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLK-DVASWNTMISALAQVGLMGE 153

Query: 159 AKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDL 218
           A++L  AMP KN VSW++M+SGY   G++  A + F A   R V++W  M+ GY++   +
Sbjct: 154 ARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITGYMKFGRV 213

Query: 219 DSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
           + A + FQ++  + +V+W  M++GY  NGR  +  RLF  M +   V  NA+    V  G
Sbjct: 214 ELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTM-LETGVKPNALSLTSVLLG 272

Query: 279 -------QI-EEAARLFIEMP-ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
                  Q+ ++  +L  + P   +  + T+++  Y +   L +A  L  Q+P K++   
Sbjct: 273 CSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCW 332

Query: 330 TAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQM 383
            AMISGY Q+    +A ++FD++       D + +  ++      G +D  +  F  M
Sbjct: 333 NAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTM 390


>gi|359491917|ref|XP_003634341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 767

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 236/745 (31%), Positives = 401/745 (53%), Gaps = 63/745 (8%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
           + A L  +G K S +F QN  +      G + +A ++F  +   N  ++N+MIS +A +G
Sbjct: 16  LHAQLIFMGLKSS-IFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYSWNTMISGFADSG 74

Query: 61  RVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMI 115
           ++ +A KLFE+MP+R+ VSWNSM++GY HN +++   ++F  M R     PD FS++ ++
Sbjct: 75  QMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKVFVSMVRDCCCVPDPFSFSCVM 134

Query: 116 TCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV 172
                 G L+ A +L       +   DT    +++  Y K G  + A+K+    P+ ++ 
Sbjct: 135 KASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLF 194

Query: 173 SWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE----LDDLDSAWKFFQKI 228
            WNSM+ GY+K G +  A + F  M ERD VSWN M+    +     + L++  + + + 
Sbjct: 195 CWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQG 254

Query: 229 PEQNVVSWVTMLSGYARN-----GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEA 283
              N +++ ++LS          G  L AR +    P  +V A   +I  Y + G++E A
Sbjct: 255 FRPNSMTYASVLSACTSIYDLEWGAHLHAR-IVRMEPCLDVYAGCGLIDMYAKCGRLESA 313

Query: 284 ARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMD 343
            ++F  + E N VSWT++I G  +    +EA  L +QM    +A+    ++  +      
Sbjct: 314 RQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQ 373

Query: 344 EANQIFDKIGTHDVV--------CWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMI 395
           +   I +++  H +           N ++  YA+CG + +A + F  M  +DI++W  MI
Sbjct: 374 KDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMI 433

Query: 396 AGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADH 455
             ++Q   ++ A + F++M   RN +SWN++++ ++Q  +  + LK+++ M +EG K D 
Sbjct: 434 TAFSQAGDVEKAREYFDKM-PERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDW 492

Query: 456 STLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD 515
            T + ++SACA LA L LG QI   A K G+ +++ V NS++TMY++CG+I+ A+ +F  
Sbjct: 493 ITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSS 552

Query: 516 ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
               +++SWN+++AGYA NG   + I++FE+M+  G  PD ++++ VLS           
Sbjct: 553 IVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLS----------- 601

Query: 576 LKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACR 635
                                   DLL RAG+L++A  ++  M  KPNA IWG LL ACR
Sbjct: 602 ------------------------DLLGRAGQLEQAKNLINQMPFKPNAAIWGALLAACR 637

Query: 636 MHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGC 695
           +H N KL  +AV+ L EL+ +    Y LL+N+++E+G+   V  VR  M   G +K PGC
Sbjct: 638 IHGNTKLAELAVKNLLELDAEGPGSYCLLANIYSESGKIQGVTNVRKLMRDKGVRKNPGC 697

Query: 696 SWIEVKNQIHTFLSGDPKQCRTAEI 720
           SWIEV N++H F   D    +  ++
Sbjct: 698 SWIEVDNRVHVFTVDDTNHPQIKDV 722



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 5/162 (3%)

Query: 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
           CA L ++ + R++H   I  G  + +F+ N L+ MY+ CG I +A  +F      +V SW
Sbjct: 4   CASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYSW 63

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           N++I+G+A +G   EA KLFE+M       D V++  ++S   H G ++  +K+F  M  
Sbjct: 64  NTMISGFADSGQMREAEKLFEKMPER----DSVSWNSMMSGYFHNGELEATIKVFVSMVR 119

Query: 585 VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGI 626
                P    ++C++      G L  A ++  G   K + GI
Sbjct: 120 DCCCVPDPFSFSCVMKASGSLGYLKLALQL-HGFAEKFDFGI 160


>gi|356528451|ref|XP_003532816.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 579

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/534 (37%), Positives = 322/534 (60%), Gaps = 2/534 (0%)

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM 259
           RDV   NL +        +D+A K F ++  ++VV+W +MLS Y +NG +  ++ LF  M
Sbjct: 27  RDVYHANLDIVALSRAGKVDAARKLFDEMATKDVVTWNSMLSAYWQNGLLQRSKALFHSM 86

Query: 260 PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLD 319
           P+RNVV+WN++IAA VQ   +++A R     PE+N  S+  +I G  R  ++ +A+RL +
Sbjct: 87  PLRNVVSWNSIIAACVQNDNLQDAFRYLAAAPEKNAASYNAIISGLARCGRMKDAQRLFE 146

Query: 320 QMPYKNIAAQTAMISGYVQ-NKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
            MP  N+ + TAM+ GY +    +  A  +F+ +   + V W VMI G  + G  +EA  
Sbjct: 147 AMPCPNVVSYTAMVDGYARVEGGIGRARALFEAMPRRNSVSWVVMINGLVENGLCEEAWE 206

Query: 379 LFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
           +F +M  K+ V    MI G+ +  +M+DA  +F+E+ + R+ VSWN +++G+ QN    +
Sbjct: 207 VFVRMPQKNDVARTAMITGFCKEGRMEDARDLFQEI-RCRDLVSWNIIMTGYAQNGRGEE 265

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
           AL +F  M + G + D  T      ACA LA+L+ G + H L IK G+ +DL V N+LIT
Sbjct: 266 ALNLFSQMIRTGMQPDDLTFVSVFIACASLASLEEGSKAHALLIKHGFDSDLSVCNALIT 325

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           +++KCG I ++EL+F      D++SWN++IA +A +G   +A   F++MV   V PD +T
Sbjct: 326 VHSKCGGIVDSELVFGQISHPDLVSWNTIIAAFAQHGLYDKARSYFDQMVTVSVQPDGIT 385

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
           F+ +LSAC   G V+  + LF  M + Y I P  EHYAC++D++SRAG+L  A +++  M
Sbjct: 386 FLSLLSACCRAGKVNESMNLFSLMVDNYGIPPRSEHYACLVDVMSRAGQLQRACKIINEM 445

Query: 619 KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVE 678
             K ++ IWG +L AC +H N++LG +A  ++  L+P  +  Y +LSN++A AG+W +V 
Sbjct: 446 PFKADSSIWGAVLAACSVHLNVELGELAARRILNLDPFNSGAYVMLSNIYAAAGKWKDVH 505

Query: 679 KVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           ++RV M+  G +KQ   SW+++ N+ H F+ GDP      +I   L+ +   ++
Sbjct: 506 RIRVLMKEQGVKKQTAYSWLQIGNKTHYFVGGDPSHPNINDIHVALRRITLHMK 559



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 140/453 (30%), Positives = 226/453 (49%), Gaps = 51/453 (11%)

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           L  L  +  D    N  +   ++ G  + A+KL D M +K++V+WNSMLS Y +NG +  
Sbjct: 19  LATLFSSTRDVYHANLDIVALSRAGKVDAARKLFDEMATKDVVTWNSMLSAYWQNGLLQR 78

Query: 190 ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRM 249
           +   F +M  R+VVSWN ++   V+ D+L  A+++    PE+N  S+  ++SG AR GRM
Sbjct: 79  SKALFHSMPLRNVVSWNSIIAACVQNDNLQDAFRYLAAAPEKNAASYNAIISGLARCGRM 138

Query: 250 LEARRLFDQMPIRNVVAWNAMIAAYVQ-RGQIEEAARLFIEMPERNPVSWTTMIDGYVRI 308
            +A+RLF+ MP  NVV++ AM+  Y +  G I  A  LF  MP RN VSW  MI+G V  
Sbjct: 139 KDAQRLFEAMPCPNVVSYTAMVDGYARVEGGIGRARALFEAMPRRNSVSWVVMINGLVEN 198

Query: 309 AKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
              +EA  +  +MP KN  A+TAMI+G+ +  RM++A  +F +I   D+V WN+++ GYA
Sbjct: 199 GLCEEAWEVFVRMPQKNDVARTAMITGFCKEGRMEDARDLFQEIRCRDLVSWNIIMTGYA 258

Query: 369 QCGRMDEAINLFRQMV---------------------------------------NKDIV 389
           Q GR +EA+NLF QM+                                       + D+ 
Sbjct: 259 QNGRGEEALNLFSQMIRTGMQPDDLTFVSVFIACASLASLEEGSKAHALLIKHGFDSDLS 318

Query: 390 TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
             N +I  +++   + D+  +F ++    + VSWN +I+ F Q+  +  A   F  M   
Sbjct: 319 VCNALITVHSKCGGIVDSELVFGQI-SHPDLVSWNTIIAAFAQHGLYDKARSYFDQMVTV 377

Query: 450 GKKADHSTLACALSACAHLAALQLGRQIHHLAIKS-GYVNDLFVGNSLITMYAKCGRIQN 508
             + D  T    LSAC     +     +  L + + G          L+ + ++ G++Q 
Sbjct: 378 SVQPDGITFLSLLSACCRAGKVNESMNLFSLMVDNYGIPPRSEHYACLVDVMSRAGQLQR 437

Query: 509 A-----ELLFKDADPVDVISWNSLIAGYAINGN 536
           A     E+ FK     D   W +++A  +++ N
Sbjct: 438 ACKIINEMPFK----ADSSIWGAVLAACSVHLN 466



 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 133/455 (29%), Positives = 249/455 (54%), Gaps = 31/455 (6%)

Query: 42  SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFD 101
           S ++    N  I A ++ G+V+ ARKLF++M  +++V+WNSM++ Y  N  ++ ++ LF 
Sbjct: 25  STRDVYHANLDIVALSRAGKVDAARKLFDEMATKDVVTWNSMLSAYWQNGLLQRSKALFH 84

Query: 102 KMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKK 161
            M   ++ SW  +I    +   L+ A       P K + A +NA+++G A+ G   +A++
Sbjct: 85  SMPLRNVVSWNSIIAACVQNDNLQDAFRYLAAAPEK-NAASYNAIISGLARCGRMKDAQR 143

Query: 162 LLDAMPSKNIVSWNSMLSGYTK-NGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
           L +AMP  N+VS+ +M+ GY +  G +  A   FEAM  R+ VSW +M++G VE    + 
Sbjct: 144 LFEAMPCPNVVSYTAMVDGYARVEGGIGRARALFEAMPRRNSVSWVVMINGLVENGLCEE 203

Query: 221 AWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQI 280
           AW+ F ++P++N V+   M++G+ + GRM +AR LF ++  R++V+WN ++  Y Q G+ 
Sbjct: 204 AWEVFVRMPQKNDVARTAMITGFCKEGRMEDARDLFQEIRCRDLVSWNIIMTGYAQNGRG 263

Query: 281 EEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDE---ARRLLDQMPY-KNIAAQTAM 332
           EEA  LF +M     + + +++ ++      +A L+E   A  LL +  +  +++   A+
Sbjct: 264 EEALNLFSQMIRTGMQPDDLTFVSVFIACASLASLEEGSKAHALLIKHGFDSDLSVCNAL 323

Query: 333 ISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN----KDI 388
           I+ + +   + ++  +F +I   D+V WN +I  +AQ G  D+A + F QMV      D 
Sbjct: 324 ITVHSKCGGIVDSELVFGQISHPDLVSWNTIIAAFAQHGLYDKARSYFDQMVTVSVQPDG 383

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEM----GKRRNTVSWNALI-----SGFLQNEFHLDA 439
           +T+ ++++   +  ++++++ +F  M    G    +  +  L+     +G LQ      A
Sbjct: 384 ITFLSLLSACCRAGKVNESMNLFSLMVDNYGIPPRSEHYACLVDVMSRAGQLQR-----A 438

Query: 440 LKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
            KI   + +   KAD S     L+AC+    ++LG
Sbjct: 439 CKI---INEMPFKADSSIWGAVLAACSVHLNVELG 470



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/434 (28%), Positives = 236/434 (54%), Gaps = 21/434 (4%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V++ N  I  L ++G+V+ A K+F +M+ K+ VT+NSM+SAY +NG +  ++ LF  MP 
Sbjct: 29  VYHANLDIVALSRAGKVDAARKLFDEMATKDVVTWNSMLSAYWQNGLLQRSKALFHSMPL 88

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN+VSWNS+IA  + ND +++A          +  S+  +I+   R G ++ A+ LF+ +
Sbjct: 89  RNVVSWNSIIAACVQNDNLQDAFRYLAAAPEKNAASYNAIISGLARCGRMKDAQRLFEAM 148

Query: 135 PNKEDTACWNAMVAGYAKI-GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
           P   +   + AMV GYA++ G    A+ L +AMP +N VSW  M++G  +NG    A + 
Sbjct: 149 PCP-NVVSYTAMVDGYARVEGGIGRARALFEAMPRRNSVSWVVMINGLVENGLCEEAWEV 207

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEAR 253
           F  M +++ V+   M+ G+ +   ++ A   FQ+I  +++VSW  +++GYA+NGR  EA 
Sbjct: 208 FVRMPQKNDVARTAMITGFCKEGRMEDARDLFQEIRCRDLVSWNIIMTGYAQNGRGEEAL 267

Query: 254 RLFDQMPIR-----NVVAWNAMIAAYVQRGQIEEAAR---LFIEMPERNPVS-WTTMIDG 304
            LF QM IR     + + + ++  A      +EE ++   L I+    + +S    +I  
Sbjct: 268 NLFSQM-IRTGMQPDDLTFVSVFIACASLASLEEGSKAHALLIKHGFDSDLSVCNALITV 326

Query: 305 YVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT----HDVVCW 360
           + +   + ++  +  Q+ + ++ +   +I+ + Q+   D+A   FD++ T     D + +
Sbjct: 327 HSKCGGIVDSELVFGQISHPDLVSWNTIIAAFAQHGLYDKARSYFDQMVTVSVQPDGITF 386

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVT-----WNTMIAGYAQIRQMDDAVKIFEEMG 415
             ++    + G+++E++NLF  MV+   +      +  ++   ++  Q+  A KI  EM 
Sbjct: 387 LSLLSACCRAGKVNESMNLFSLMVDNYGIPPRSEHYACLVDVMSRAGQLQRACKIINEMP 446

Query: 416 KRRNTVSWNALISG 429
            + ++  W A+++ 
Sbjct: 447 FKADSSIWGAVLAA 460



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 92/215 (42%), Gaps = 19/215 (8%)

Query: 475 RQIHH---LAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGY 531
           RQ H    LA       D++  N  I   ++ G++  A  LF +    DV++WNS+++ Y
Sbjct: 11  RQRHSFFVLATLFSSTRDVYHANLDIVALSRAGKVDAARKLFDEMATKDVVTWNSMLSAY 70

Query: 532 AINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL 591
             NG    +  LF  M +  V    V++  +++AC     +    +      E  A    
Sbjct: 71  WQNGLLQRSKALFHSMPLRNV----VSWNSIIAACVQNDNLQDAFRYLAAAPEKNAAS-- 124

Query: 592 VEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL-GACRMHQNIKLGRIAVEKL 650
              Y  +I  L+R GR+ +A  + + M   PN   +  ++ G  R+   I   R     L
Sbjct: 125 ---YNAIISGLARCGRMKDAQRLFEAMPC-PNVVSYTAMVDGYARVEGGIGRAR----AL 176

Query: 651 SELEPQKTSC-YALLSNMHAEAGRWDEVEKVRVSM 684
            E  P++ S  + ++ N   E G  +E  +V V M
Sbjct: 177 FEAMPRRNSVSWVVMINGLVENGLCEEAWEVFVRM 211


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 237/760 (31%), Positives = 401/760 (52%), Gaps = 65/760 (8%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP--QRNLVSWNSMIAGYLHNDKVK 94
           I    +  +  T N++I+ Y + G + +AR++++++   +R + SWN+M+ GY+    ++
Sbjct: 49  IIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIE 108

Query: 95  EARELFDKM----FRPDLFSWALMITCYTRKGELEKAREL-FDLLPNKE--DTACWNAMV 147
           +A +L  +M      PD  +    ++     G LE  RE+ F  +      D    N ++
Sbjct: 109 KALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCIL 168

Query: 148 AGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL 207
             YAK G+  EA+++ D M  K++VSW   + GY   G    A + F+ ME+  VV   +
Sbjct: 169 NMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRI 228

Query: 208 MLDGYVELDDLDSAWKFFQKIP--------EQNVVSWVTMLSGYARNGRMLEARRLFDQM 259
                +      +A K+ + +         E +      ++  YA+ G   + R++F+++
Sbjct: 229 TYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKL 288

Query: 260 PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEAR 315
             R+++AWN MI    + G  EEA+ ++ +M       N +++  +++  V  A L   +
Sbjct: 289 VNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGK 348

Query: 316 RLLDQMP----YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
            +  ++       +I  Q A+IS Y +   + +A  +FDK+   DV+ W  MI G A+ G
Sbjct: 349 EIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSG 408

Query: 372 RMDEAINLFRQM----VNKDIVTW-----------------------------------N 392
              EA+ ++++M    V  + VT+                                   N
Sbjct: 409 FGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGN 468

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
           T++  Y+    + DA ++F+ M  +R+ V++NA+I G+  +    +ALK+F  + +EG K
Sbjct: 469 TLVNMYSMCGSVKDARQVFDRM-IQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLK 527

Query: 453 ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512
            D  T    L+ACA+  +L+  R+IH L  K G+ +D  VGN+L++ YAKCG   +A ++
Sbjct: 528 PDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIV 587

Query: 513 FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
           F+     +VISWN++I G A +G   +A++LFE M MEGV PD VTF+ +LSACSH GL+
Sbjct: 588 FEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLL 647

Query: 573 DGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLG 632
           + G + F  M++ +AI P +EHY CM+DLL RAG+LDEA  ++K M  + N  IWG LLG
Sbjct: 648 EEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLG 707

Query: 633 ACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQ 692
           ACR+H N+ +   A E   +L+      Y  LS+M+A AG WD   K+R  ME  G  K+
Sbjct: 708 ACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKE 767

Query: 693 PGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           PG SWI+V +++H F++ D    ++ +I   L  L   ++
Sbjct: 768 PGRSWIQVGDKLHYFVAEDRSHPQSEKIYAELDRLTHAMK 807



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 171/367 (46%), Gaps = 59/367 (16%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQ----KNTVTYNSMISA---------------------- 55
           I  L KSG   EA+ ++ +M Q     N VTY S+++A                      
Sbjct: 401 IGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGL 460

Query: 56  -------------YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
                        Y+  G V DAR++F++M QR++V++N+MI GY  ++  KEA +LFD+
Sbjct: 461 ATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDR 520

Query: 103 M----FRPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGN 155
           +     +PD  ++  M+      G LE ARE+  L+       DT+  NA+V+ YAK G+
Sbjct: 521 LQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGS 580

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDG 211
           +++A  + + M  +N++SWN+++ G  ++G    A + FE M+    + D+V++  +L  
Sbjct: 581 FSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSA 640

Query: 212 YVELDDLDSAWKFFQKIPEQ-----NVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVV 265
                 L+   ++F  + +       +  +  M+    R G++ EA  L   MP + N  
Sbjct: 641 CSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTR 700

Query: 266 AWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
            W A++ A    G +   E AA   +++   N V +  +   Y      D A +L   M 
Sbjct: 701 IWGALLGACRIHGNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLME 760

Query: 323 YKNIAAQ 329
            + +  +
Sbjct: 761 QRGVTKE 767



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 135/287 (47%), Gaps = 20/287 (6%)

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
           A+ +   + Q+G + + S     L  C  +  L  GRQ+H   I+   V D +  N+LI 
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66

Query: 499 MYAKCGRIQNAELLFKDADPVD--VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
           MY +CG I+ A  ++K    ++  V SWN+++ GY   G   +A+KL  +M   G+APD 
Sbjct: 67  MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126

Query: 557 VTFIGVLSACSHVGLVDGGLKL-FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV 615
            T +  LS+C   G ++ G ++ F+ M      +  V +  C++++ ++ G ++EA E+ 
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVAN--CILNMYAKCGSIEEAREVF 184

Query: 616 KGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE-----PQKTSCYALLSNMHAE 670
             M+ K +   W   +G    + +      A E   ++E     P + +  ++L+   + 
Sbjct: 185 DKME-KKSVVSWTITIGG---YADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSP 240

Query: 671 AG-RWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCR 716
           A  +W +    R+   G  +    G + +++  +      G  K CR
Sbjct: 241 AALKWGKAVHSRILNAGHESDTAVGTALVKMYAK-----CGSYKDCR 282


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 239/690 (34%), Positives = 370/690 (53%), Gaps = 77/690 (11%)

Query: 81  NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP-NKED 139
           N +I  Y  +     AR+LFD++ +PD+ +   +IT Y+  G L+ ARE+F+  P +  D
Sbjct: 52  NRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRD 111

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYT-------KNGEMH 188
           T  +NAM+ GY+ + + + A +L  AM   N      ++ S+LS  T       + G+MH
Sbjct: 112 TVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMH 171

Query: 189 -----LASKFFEAMEERDVVSWNLMLDGYVE---------LDDLDSAWKFFQKIPEQNVV 234
                   + F A+        N +L  YV+            + SA K F ++P++N  
Sbjct: 172 GTVVKFGIEIFPAV-------LNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEF 224

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP--- 291
            W T+++GY RNG +  AR + D M  +  +AWNAMI+ Y+  G  E+A  LF +M    
Sbjct: 225 IWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLG 284

Query: 292 -ERNPVSWTTMID-----GYVRIAKLDEARRLLDQM-PYKN--IAAQTAMISGYVQNKRM 342
            + +  ++T++I      G+  + K   A  L +++ P ++  ++    +I+ Y +  ++
Sbjct: 285 VQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKV 344

Query: 343 DEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIR 402
           D A +IF ++   D++ WN ++ GY   GRM+EA + F QM  K+++TW  MI+G A   
Sbjct: 345 DGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLA--- 401

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
                                        QN F   ALK+F  M  +G + +    A A+
Sbjct: 402 -----------------------------QNGFGEQALKLFNQMKLDGYEPNDYAFAGAI 432

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
           +AC+ L AL+ GRQ+H   +  G+ + L VGN++ITMYA+CG ++ A  +F     VD +
Sbjct: 433 TACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPV 492

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           SWNS+IA    +G+  +AI+L+E+M+ EG+ PD  TF+ VLSACSH GLV+ G + F  M
Sbjct: 493 SWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSM 552

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKL 642
            E Y I P  +HYA MIDL  RAG+  +A  ++  M  +  A IW  LL  CR H N+ L
Sbjct: 553 LENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDL 612

Query: 643 GRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKN 702
           G  A EKL +L PQ    Y LLSNM+A  GRW++V + R  M   G +K+P CSW EV+N
Sbjct: 613 GIEAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVEN 672

Query: 703 QIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           ++H FL  D        I N L+ L  +++
Sbjct: 673 KVHVFLVDDTVHPEVLSIYNYLEKLNLEMK 702



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 156/612 (25%), Positives = 279/612 (45%), Gaps = 126/612 (20%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP--QRN 76
           N+ I    KS     A K+F ++ Q + +   ++I+AY+  G +  AR++F + P   R+
Sbjct: 52  NRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRD 111

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYT-------RKGELE 125
            V +N+MI GY H +    A ELF  M    F+PD F++A +++  T       + G++ 
Sbjct: 112 TVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMH 171

Query: 126 KARELF--DLLPNKEDTACWNAMVAGYAKIGNYN---------EAKKLLDAMPSKNIVSW 174
                F  ++ P     A  NA+++ Y K  +            A+KL D MP +N   W
Sbjct: 172 GTVVKFGIEIFP-----AVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIW 226

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI------ 228
            ++++GY +NG++  A +  + M E+  ++WN M+ GY+     + A   F+K+      
Sbjct: 227 TTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQ 286

Query: 229 -----------------------------------PEQNVVSWV--TMLSGYARNGRMLE 251
                                              P+++ +  V  T+++ Y + G++  
Sbjct: 287 VDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDG 346

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKL 311
           AR++F +MP+++++ WN +++ YV  G++EEA   F +MPE+N ++WT MI G  +    
Sbjct: 347 ARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFG 406

Query: 312 DEARRLLDQMP--------YKNIAAQTAM-ISGYVQNKRMDEANQIFDKIGTHDVVCWNV 362
           ++A +L +QM         Y    A TA  + G ++N R   A QI        +   N 
Sbjct: 407 EQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHA-QIVHLGHDSTLSVGNA 465

Query: 363 MIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
           MI  YA+CG ++ A  +F  M   D V+WN+MIA   Q      A++++E+M K      
Sbjct: 466 MITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLK------ 519

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ-----I 477
                                     EG   D  T    LSAC+H   ++ G +     +
Sbjct: 520 --------------------------EGILPDRRTFLTVLSACSHAGLVEEGNRYFNSML 553

Query: 478 HHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS--WNSLIAGYAING 535
            +  I  G   D +    +I ++ + G+  +A+ +  D+ P +  +  W +L+AG   +G
Sbjct: 554 ENYGIAPG--EDHYA--RMIDLFCRAGKFSDAKNVI-DSMPFEARAPIWEALLAGCRTHG 608

Query: 536 NATEAIKLFEEM 547
           N    I+  E++
Sbjct: 609 NMDLGIEAAEKL 620



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/413 (25%), Positives = 200/413 (48%), Gaps = 31/413 (7%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKV 93
           A K+F +M ++N   + ++I+ Y +NG +  AR++ + M ++  ++WN+MI+GYLH+   
Sbjct: 211 ARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLF 270

Query: 94  KEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELF------DLLPNKED-TAC 142
           ++A  LF KM     + D  ++  +I+     G     +++       +L P+++   + 
Sbjct: 271 EDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSV 330

Query: 143 WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV 202
            N ++  Y K G  + A+K+   MP K+I++WN++LSGY   G M  A  FF  M E+++
Sbjct: 331 GNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNL 390

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLS-----GYARNGRMLEAR 253
           ++W +M+ G  +    + A K F ++     E N  ++   ++     G   NGR L A 
Sbjct: 391 LTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHA- 449

Query: 254 RLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDE 313
           ++        +   NAMI  Y + G +E A  +F+ MP  +PVSW +MI    +     +
Sbjct: 450 QIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVK 509

Query: 314 ARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIGTHDVVC-----WNVMI 364
           A  L +QM  + I         ++S       ++E N+ F+ +  +  +      +  MI
Sbjct: 510 AIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMI 569

Query: 365 KGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
             + + G+  +A N+   M        W  ++AG      MD  ++  E++ K
Sbjct: 570 DLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFK 622



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 170/343 (49%), Gaps = 22/343 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  IT   K G+V+ A KIF +M  K+ +T+N+++S Y   GR+ +A+  F QMP++NL+
Sbjct: 332 NTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLL 391

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFD-- 132
           +W  MI+G   N   ++A +LF++M    + P+ +++A  IT  +  G LE  R+L    
Sbjct: 392 TWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQI 451

Query: 133 -LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
             L +    +  NAM+  YA+ G    A+ +   MP  + VSWNSM++   ++G    A 
Sbjct: 452 VHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAI 511

Query: 192 KFFEAMEERDVV----SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSG 242
           + +E M +  ++    ++  +L        ++   ++F  + E   ++     +  M+  
Sbjct: 512 ELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDL 571

Query: 243 YARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQ----IEEAARLFIEMPERNPVS 297
           + R G+  +A+ + D MP       W A++A     G     IE A +LF  +P+ +  +
Sbjct: 572 FCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDG-T 630

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340
           +  + + Y  + + ++  R    M  + +  + A     V+NK
Sbjct: 631 YVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVENK 673



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 118/458 (25%), Positives = 201/458 (43%), Gaps = 75/458 (16%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP----QRNL 77
           IT   ++G +  A +I   M+++  + +N+MIS Y  +G   DA  LF +M     Q + 
Sbjct: 230 ITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDE 289

Query: 78  VSWNSMIA-----GYLHNDKVKEARELFDKMFRPD----LFSWALMITCYTRKGELEKAR 128
            ++ S+I+     G+    K   A  L +++  PD    L     +IT Y + G+++ AR
Sbjct: 290 STYTSVISACADGGFFLLGKQVHAYILKNEL-NPDRDFLLSVGNTLITLYWKYGKVDGAR 348

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
           ++F  +P K D   WN +++GY   G   EAK     MP KN+++W  M+SG  +NG   
Sbjct: 349 KIFYEMPVK-DIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGE 407

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVE----LDDLDSAWKFFQKIPEQNVVSWVT----ML 240
            A K F  M+       +    G +     L  L++  +   +I      S ++    M+
Sbjct: 408 QALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMI 467

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ--------------------- 279
           + YAR G +  AR +F  MP  + V+WN+MIAA  Q G                      
Sbjct: 468 TMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRR 527

Query: 280 --------------IEEAARLFIEMPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQ 320
                         +EE  R F  M E   ++     +  MID + R  K  +A+ ++D 
Sbjct: 528 TFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDS 587

Query: 321 MPYKNIAA-QTAMISGYVQNKRMD----EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
           MP++  A    A+++G   +  MD     A ++F  I  HD   + ++   YA  GR ++
Sbjct: 588 MPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGT-YVLLSNMYASLGRWND 646

Query: 376 AINLFRQMVNKDI-----VTWNTMIAGYAQIRQMDDAV 408
                + M ++ +      +W T +     +  +DD V
Sbjct: 647 VARTRKLMRDRGVKKEPACSW-TEVENKVHVFLVDDTV 683



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 2/115 (1%)

Query: 468 LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSL 527
           L++  L R +H   I SG+     + N LI +Y K      A  LF +    DVI+  +L
Sbjct: 26  LSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTTL 85

Query: 528 IAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           I  Y+  GN   A ++F E  ++    D V +  +++  SH+      ++LF  M
Sbjct: 86  ITAYSALGNLKMAREIFNETPLD--MRDTVFYNAMITGYSHMNDGHSAIELFRAM 138


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/571 (37%), Positives = 326/571 (57%), Gaps = 44/571 (7%)

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRN 263
           S+  M+  ++    +D A   F K+   +V  +  M++GYARN R   A +LF +MP+++
Sbjct: 13  SYQSMITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKD 72

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
           VV+WN+MI        +  A +LF EMPER+ VSWTTMI+G+++  K++ A  L  +MP+
Sbjct: 73  VVSWNSMIKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPF 132

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
           ++IAA  +MI GY  N R+++  ++F ++   +V+ W  MI G  Q GR +EA+ LFRQM
Sbjct: 133 RDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQM 192

Query: 384 VNKDIVTWNT-----------------------------------------MIAGYAQIR 402
           +   +    T                                         +I  YA  +
Sbjct: 193 MGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCK 252

Query: 403 QMDDAVKIFEEMGK-RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
           QM+D++++F   GK   N V W AL++G+  N  H DALK+F  M +EG   + S+   A
Sbjct: 253 QMEDSLRVFH--GKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSA 310

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           L++C  L AL  GR+IH  A+K G   D+FVGNSLI MY +CG + +  ++FK     ++
Sbjct: 311 LNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNI 370

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC 581
           +SWNS+I G A +G    A+  F +MV   V PD +TF G+LSACSH G+   G  LF+ 
Sbjct: 371 VSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKY 430

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIK 641
            +E  + E  ++HYACM+D+L R+G+L+EA E+++ M +K N+ +W  LL AC MH  ++
Sbjct: 431 FSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLE 490

Query: 642 LGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVK 701
           +   A + + +LEP  +S Y LLSN++A A RW +V ++R  M+  G  KQPG SWI +K
Sbjct: 491 VAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIK 550

Query: 702 NQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
              + FLSGD     +  I   L+ L  +++
Sbjct: 551 GWRNEFLSGDRSHPSSDRIYQKLEWLGGKLK 581



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 138/562 (24%), Positives = 259/562 (46%), Gaps = 50/562 (8%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            F+    IT   ++ R++EA  +F ++S  +   Y  MI+ YA+N R + A +LF +MP 
Sbjct: 11  TFSYQSMITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPV 70

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           +++VSWNSMI G      +  AR+LFD+M    + SW  MI  + + G++E A  LF  +
Sbjct: 71  KDVVSWNSMIKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKM 130

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P + D A WN+M+ GY   G   +  +L   MP +N++SW SM+ G  ++G    A   F
Sbjct: 131 PFR-DIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLF 189

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
                        M+   VE+    S              ++  +++  A    + +  +
Sbjct: 190 RQ-----------MMGCGVEVKPTSS--------------TYCCVITACANASALYQGVQ 224

Query: 255 LFDQMPIRNVVAWNAMIAA-----YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIA 309
           +   +  +   +++A I+A     Y    Q+E++ R+F      N V WT ++ GY    
Sbjct: 225 IHAHV-FKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNC 283

Query: 310 KLDEARRLLDQMPYKNI----AAQTAMISGYVQNKRMDEANQIFD---KIGTH-DVVCWN 361
           K ++A ++  +M  + +    ++ T+ ++     + +D   +I     K+G   DV   N
Sbjct: 284 KHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGN 343

Query: 362 VMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK---RR 418
            +I  Y +CG +++ + +F+++  K+IV+WN++I G AQ      A+  F +M +     
Sbjct: 344 SLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEP 403

Query: 419 NTVSWNALISGFLQNEFHLDALKIFVLMTQEGK---KADHSTLACALSACAHLAALQLGR 475
           + +++  L+S    +        +F   ++      K DH   AC +        L+   
Sbjct: 404 DEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDH--YACMVDILGRSGKLEEAE 461

Query: 476 Q-IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
           + I ++ +K+  +  L V  S  TM++K    + A     D +P    ++  L   YA  
Sbjct: 462 ELIRNMPVKANSMVWL-VLLSACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNLYASA 520

Query: 535 GNATEAIKLFEEMVMEGVAPDP 556
              ++  ++  EM   G+   P
Sbjct: 521 SRWSDVSRIRREMKQRGITKQP 542


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 251/760 (33%), Positives = 418/760 (55%), Gaps = 46/760 (6%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G Y    N  I    K+G V  A ++F ++S ++ V++ +M+S YA+NG   +A  L+ Q
Sbjct: 74  GKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQ 133

Query: 72  MPQRNLVS----WNSMIAGYLHNDKVKEAREL----FDKMFRPDLFSWALMITCYTRKGE 123
           M +  +V      +S+++     +   + R +    +   F  ++F    +IT Y R G 
Sbjct: 134 MHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGS 193

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP----SKNIVSWNSMLS 179
              A  +F  +P++ DT  +N +++G+A+ G+   A ++ + M     S + V+ +S+L+
Sbjct: 194 FRLAERVFCDMPHR-DTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLA 252

Query: 180 GYTKNGEMH----LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
                G++     L S  F+A    D +    +LD YV+  D+++A   F      NVV 
Sbjct: 253 ACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVL 312

Query: 236 WVTMLSGYARNGRMLEARRLFDQMP---IR-NVVAWNAMIAAYVQRGQI---EEAARLFI 288
           W  ML  + +   + ++  LF QM    IR N   +  ++       +I   E+   L +
Sbjct: 313 WNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSV 372

Query: 289 EMP-ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347
           +   E +      +ID Y +   L++ARR+L+ +  K++ + T+MI+GYVQ++   +A  
Sbjct: 373 KTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALA 432

Query: 348 IFDKIGTHDVVCWNV----MIKGYAQCGRMDEAINLFRQMV----NKDIVTWNTMIAGYA 399
            F ++    +   N+     I G A    M + + +  ++     + D+  WN ++  YA
Sbjct: 433 AFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYA 492

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
           +  ++ +A   FEE+ + ++ ++WN L+SGF Q+  H +ALK+F+ M Q G K +  T  
Sbjct: 493 RCGRIREAFSSFEEI-EHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFV 551

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
            ALSA A+LA ++ G+QIH   IK+G+  +  VGN+LI++Y KCG  ++A++ F +    
Sbjct: 552 SALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSER 611

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
           + +SWN++I   + +G   EA+ LF++M  EG+ P+ VTFIGVL+ACSHVGLV+ GL  F
Sbjct: 612 NEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYF 671

Query: 580 ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
           + M++ Y I P  +HYAC+ID+  RAG+LD A + ++ M I  +A +W TLL AC++H+N
Sbjct: 672 KSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKN 731

Query: 640 IKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
           I++G  A + L ELEP  ++ Y LLSN +A   +W   ++VR  M   G +K+PG SWIE
Sbjct: 732 IEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIE 791

Query: 700 VKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNTPLAVI 739
           VKN +H F  GD            L  LA QI N  LAVI
Sbjct: 792 VKNVVHAFFVGD-----------RLHPLAEQIYNF-LAVI 819



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 78/160 (48%), Gaps = 1/160 (0%)

Query: 417 RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC-AHLAALQLGR 475
           RR   S    ++GFL +E     L +F    ++         ACAL AC  +    Q+  
Sbjct: 3   RRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQVVP 62

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
           +IH  A+  G      VGN LI +Y+K G +  A  +F++    D +SW ++++GYA NG
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
              EA+ L+ +M   GV P P     VLS+C+   L   G
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQG 162


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 251/760 (33%), Positives = 418/760 (55%), Gaps = 46/760 (6%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G Y    N  I    K+G V  A ++F ++S ++ V++ +M+S YA+NG   +A  L+ Q
Sbjct: 74  GKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQ 133

Query: 72  MPQRNLVS----WNSMIAGYLHNDKVKEAREL----FDKMFRPDLFSWALMITCYTRKGE 123
           M +  +V      +S+++     +   + R +    +   F  ++F    +IT Y R G 
Sbjct: 134 MHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGS 193

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP----SKNIVSWNSMLS 179
              A  +F  +P++ DT  +N +++G+A+ G+   A ++ + M     S + V+ +S+L+
Sbjct: 194 FRLAERVFCDMPHR-DTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLA 252

Query: 180 GYTKNGEMH----LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
                G++     L S  F+A    D +    +LD YV+  D+++A   F      NVV 
Sbjct: 253 ACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVL 312

Query: 236 WVTMLSGYARNGRMLEARRLFDQMP---IR-NVVAWNAMIAAYVQRGQI---EEAARLFI 288
           W  ML  + +   + ++  LF QM    IR N   +  ++       +I   E+   L +
Sbjct: 313 WNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSV 372

Query: 289 EMP-ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347
           +   E +      +ID Y +   L++ARR+L+ +  K++ + T+MI+GYVQ++   +A  
Sbjct: 373 KTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALA 432

Query: 348 IFDKIGTHDVVCWNV----MIKGYAQCGRMDEAINLFRQMV----NKDIVTWNTMIAGYA 399
            F ++    +   N+     I G A    M + + +  ++     + D+  WN ++  YA
Sbjct: 433 AFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYA 492

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
           +  ++ +A   FEE+ + ++ ++WN L+SGF Q+  H +ALK+F+ M Q G K +  T  
Sbjct: 493 RCGRIREAFSSFEEI-EHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFV 551

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
            ALSA A+LA ++ G+QIH   IK+G+  +  VGN+LI++Y KCG  ++A++ F +    
Sbjct: 552 SALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSER 611

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
           + +SWN++I   + +G   EA+ LF++M  EG+ P+ VTFIGVL+ACSHVGLV+ GL  F
Sbjct: 612 NEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYF 671

Query: 580 ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
           + M++ Y I P  +HYAC+ID+  RAG+LD A + ++ M I  +A +W TLL AC++H+N
Sbjct: 672 KSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKN 731

Query: 640 IKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
           I++G  A + L ELEP  ++ Y LLSN +A   +W   ++VR  M   G +K+PG SWIE
Sbjct: 732 IEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIE 791

Query: 700 VKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNTPLAVI 739
           VKN +H F  GD            L  LA QI N  LAVI
Sbjct: 792 VKNVVHAFFVGD-----------RLHPLAEQIYNF-LAVI 819



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 78/160 (48%), Gaps = 1/160 (0%)

Query: 417 RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC-AHLAALQLGR 475
           RR   S    ++GFL +E     L +F    ++         ACAL AC  +    Q+  
Sbjct: 3   RRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQVVP 62

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
           +IH  A+  G      VGN LI +Y+K G +  A  +F++    D +SW ++++GYA NG
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
              EA+ L+ +M   GV P P     VLS+C+   L   G
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQG 162


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 248/748 (33%), Positives = 387/748 (51%), Gaps = 78/748 (10%)

Query: 45  NTVTYNSMISA-----YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEAREL 99
           N + YN ++       Y   G   DA+ +F Q+       WN MI G+    +   A   
Sbjct: 75  NGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLF 134

Query: 100 FDKMFR----PDLFSWALMITCYTRKGELEKARELFD---LLPNKEDTACWNAMVAGYAK 152
           + KM      PD +++  +I        +   R + D    +  + D    ++++  Y++
Sbjct: 135 YFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSE 194

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD----------- 201
            G  ++A+ L D MPSK+ V WN ML+GY KNG+   A+  F  M   +           
Sbjct: 195 NGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACV 254

Query: 202 --VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM 259
             V +  +M++   +L  L  +       P  N     T+L+ YA+ G + +ARRLFD M
Sbjct: 255 LSVCASEIMINFGSQLHGLVVSSGLEMDSPVAN-----TLLAMYAKCGHLFDARRLFDMM 309

Query: 260 PIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PE--------------------- 292
           P  ++V WN MI+ YVQ G ++EA+ LF EM      P+                     
Sbjct: 310 PKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGK 369

Query: 293 -------RNPVSW-----TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340
                  RN VS      + +ID Y +   ++ AR++ DQ    +I   TAMISGYV N 
Sbjct: 370 EIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNG 429

Query: 341 RMDEANQIF-----DKIGTHDVVCWNVM--IKGYAQCGRMDEAI-NLFRQMVNKDIVTWN 392
             + A +IF     +++  + V   +V+    G A      E   ++ +          +
Sbjct: 430 MNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGS 489

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
            ++  YA+  ++D A + F  +  + + V WN++I+   QN    +A+ +F  M   G K
Sbjct: 490 AIMDMYAKCGRLDLAHQTFIGISDK-DAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTK 548

Query: 453 ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512
            D  +++ ALSACA+L AL  G++IH   ++  + +DLF  ++LI MY+KCG +  A  +
Sbjct: 549 YDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRV 608

Query: 513 FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
           F   +  + +SWNS+IA Y  +G   +++ LF  M+ +G+ PD VTF+ ++SAC H G V
Sbjct: 609 FDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQV 668

Query: 573 DGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLG 632
           D G+  F CMTE   I   +EHYACM+DL  RAGRL+EAF M+  M   P+AG+WGTLLG
Sbjct: 669 DEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLG 728

Query: 633 ACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQ 692
           ACR+H N++L  +A   L +L+PQ +  Y LLSN+HA AG+W+ V K+R  M+  G QK 
Sbjct: 729 ACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKV 788

Query: 693 PGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           PGCSWI+V N  H F++ D    ++++I
Sbjct: 789 PGCSWIDVNNTTHMFVAADRSHPQSSQI 816



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 105/456 (23%), Positives = 198/456 (43%), Gaps = 62/456 (13%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  +    K G + +A ++F  M + + VT+N MIS Y +NG +++A  LF +M    + 
Sbjct: 287 NTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMK 346

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKAREL 130
              ++++S +        +++ +E+   + R     D+F  + +I  Y +  ++E AR++
Sbjct: 347 PDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKI 406

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEA----KKLLDAMPSKNIVSWNSM------LSG 180
           FD     +   C  AM++GY   G  N A    + LL      N V+  S+      L+ 
Sbjct: 407 FDQRTPVDIVVC-TAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAA 465

Query: 181 YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
            T   E+H      +          + ++D Y +   LD A + F  I +++ V W +M+
Sbjct: 466 LTLGKELH--GHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMI 523

Query: 241 SGYARNGRMLEARRLFDQMPIRNV-------------------VAWNAMIAAYVQRGQIE 281
           +  ++NG+  EA  LF QM +                      + +   I A++ RG   
Sbjct: 524 TSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFR 583

Query: 282 EAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKR 341
             + LF E         + +ID Y +   LD A R+ D M  KN  +  ++I+ Y  + R
Sbjct: 584 --SDLFAE---------SALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGR 632

Query: 342 MDEANQIF-----DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK-----DIVTW 391
           + ++  +F     D I   D V +  +I      G++DE I+ FR M  +      +  +
Sbjct: 633 LKDSLNLFHGMLGDGI-QPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHY 691

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
             M+  + +  ++++A  +   M    +   W  L+
Sbjct: 692 ACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLL 727



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 153/335 (45%), Gaps = 26/335 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF ++  I    K   VE A KIF Q +  + V   +MIS Y  NG  N+A ++F  + Q
Sbjct: 384 VFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQ 443

Query: 75  R----NLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEK 126
                N V+  S++        +   +EL   + +       +  + ++  Y + G L+ 
Sbjct: 444 ERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDL 503

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM----PSKNIVSWNSMLSGYT 182
           A + F  + +K D  CWN+M+   ++ G   EA  L   M       + VS ++ LS   
Sbjct: 504 AHQTFIGISDK-DAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACA 562

Query: 183 KNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
               +H   +    M       D+ + + ++D Y +  +LD A + F  + E+N VSW +
Sbjct: 563 NLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNS 622

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
           +++ Y  +GR+ ++  LF  M    +    V + A+I+A    GQ++E    F  M E  
Sbjct: 623 IIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEEL 682

Query: 295 PV-----SWTTMIDGYVRIAKLDEARRLLDQMPYK 324
            +      +  M+D + R  +L+EA  +++ MP+ 
Sbjct: 683 GIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFS 717



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 14/178 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F ++  I    K G ++ A ++F  M +KN V++NS+I+AY  +GR+ D+  LF  M
Sbjct: 584 SDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGM 643

Query: 73  ----PQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGE 123
                Q + V++ ++I+   H  +V E    F  M         +  +A M+  + R G 
Sbjct: 644 LGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGR 703

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
           L +A  + + +P   D   W  ++      GN   A+     + S+N+   +   SGY
Sbjct: 704 LNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAE-----VASRNLFDLDPQNSGY 756



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 49/109 (44%)

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD 517
           L   L  C   + L  GRQ H   + +G   +  +G  L+ MY  CG   +A+ +F    
Sbjct: 49  LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108

Query: 518 PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
                 WN +I G+ + G    A+  + +M+  G  PD  TF  V+ AC
Sbjct: 109 LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKAC 157


>gi|255587181|ref|XP_002534168.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223525755|gb|EEF28217.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 513

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/471 (40%), Positives = 299/471 (63%), Gaps = 2/471 (0%)

Query: 92  KVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYA 151
           K K+++   +K    D+ +W + IT + R G+   A ++F+ +P +  T  +NAM++GY 
Sbjct: 41  KFKQSKNESEKTTDSDIVNWNMAITTHMRNGQCHSALQVFNTMP-RRSTVTYNAMISGYL 99

Query: 152 KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
             G ++ A+++ D MP +++ +WN MLSGY +N  +  A   FE M  RDVVSWN ML G
Sbjct: 100 SNGRFDLAREMFDKMPERDLFTWNVMLSGYVRNKNLTDARGLFERMPRRDVVSWNAMLSG 159

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
           Y +   +  A + F ++P +N +SW  +L+ Y +NGR+ +ARRLF+     +VV+WN ++
Sbjct: 160 YAQNGFIAEAREIFDEMPVKNSISWNGLLAAYVQNGRIEDARRLFESKMDWDVVSWNCLM 219

Query: 272 AAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
             +V++ ++ +A R+F  +P R+ VSW TMI GY +  +L+EAR+L ++ P +++   TA
Sbjct: 220 GGFVKKKRLVDARRVFDRIPVRDEVSWNTMITGYAQNGELEEARKLFEESPTQDVFTWTA 279

Query: 332 MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTW 391
           M+SGYVQN  +DEA  IFDK+   + V WN MI GY QC RMD A  LF  M  ++I +W
Sbjct: 280 MVSGYVQNGMVDEARSIFDKMPEKNSVSWNAMIAGYVQCKRMDMAKELFEAMPFRNISSW 339

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
           NTMI GYAQ   +  A  +F+ M  +R+++SW+A+I+G++QN  + +A+ ++V M ++G+
Sbjct: 340 NTMITGYAQSGNVPHARNLFDRM-PQRDSISWSAMIAGYVQNGCNEEAVHLYVEMKRDGE 398

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL 511
             + S+    L+ACA +AAL LG+Q H   +K GY    +VGN+L+ MY KCG I  A+ 
Sbjct: 399 SLNRSSFTSVLTACADIAALDLGKQFHGWLVKVGYQTGCYVGNALLAMYCKCGSIDEADD 458

Query: 512 LFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
            F +    D+ISWN++I GYA +G   EA+ +FE M   GV PD  T + V
Sbjct: 459 AFHEITDKDLISWNTMIYGYARHGFGKEALIVFESMKTVGVKPDEATMVTV 509



 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 172/492 (34%), Positives = 282/492 (57%), Gaps = 46/492 (9%)

Query: 6   KSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDA 65
           +S+       +   K++TQ  K  + E       + +  + V +N  I+ + +NG+ + A
Sbjct: 22  QSVKGTNRTPYPSKKELTQKFKQSKNES-----EKTTDSDIVNWNMAITTHMRNGQCHSA 76

Query: 66  RKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELE 125
            ++F  MP+R+ V++N+MI+GYL N +   ARE+FDKM   DLF+W +M++ Y R   L 
Sbjct: 77  LQVFNTMPRRSTVTYNAMISGYLSNGRFDLAREMFDKMPERDLFTWNVMLSGYVRNKNLT 136

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
            AR LF+ +P + D   WNAM++GYA+ G   EA+++ D MP KN +SWN +L+ Y +NG
Sbjct: 137 DARGLFERMP-RRDVVSWNAMLSGYAQNGFIAEAREIFDEMPVKNSISWNGLLAAYVQNG 195

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR 245
            +  A + FE+  + DVVSWN ++ G+V+   L  A + F +IP ++ VSW TM++GYA+
Sbjct: 196 RIEDARRLFESKMDWDVVSWNCLMGGFVKKKRLVDARRVFDRIPVRDEVSWNTMITGYAQ 255

Query: 246 NGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGY 305
           NG + EAR+LF++ P ++V  W AM++ YVQ G ++EA  +F +MPE+N VSW  MI GY
Sbjct: 256 NGELEEARKLFEESPTQDVFTWTAMVSGYVQNGMVDEARSIFDKMPEKNSVSWNAMIAGY 315

Query: 306 VRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIK 365
           V+  ++D A+ L + MP++NI++   MI+GY Q+  +  A  +FD++   D + W+ MI 
Sbjct: 316 VQCKRMDMAKELFEAMPFRNISSWNTMITGYAQSGNVPHARNLFDRMPQRDSISWSAMIA 375

Query: 366 GYAQCGRMDEAINLFRQM--------------------------VNKDIVTW-------- 391
           GY Q G  +EA++L+ +M                          + K    W        
Sbjct: 376 GYVQNGCNEEAVHLYVEMKRDGESLNRSSFTSVLTACADIAALDLGKQFHGWLVKVGYQT 435

Query: 392 -----NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446
                N ++A Y +   +D+A   F E+   ++ +SWN +I G+ ++ F  +AL +F  M
Sbjct: 436 GCYVGNALLAMYCKCGSIDEADDAFHEITD-KDLISWNTMIYGYARHGFGKEALIVFESM 494

Query: 447 TQEGKKADHSTL 458
              G K D +T+
Sbjct: 495 KTVGVKPDEATM 506


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/567 (37%), Positives = 324/567 (57%), Gaps = 44/567 (7%)

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
           M+  ++    +D A   F K+   +V  +  M++GYARN R   A +LF +MP+++VV+W
Sbjct: 1   MITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSW 60

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
           N+MI        +  A +LF EMPER+ VSWTTMI+G+++  K++ A  L  +MP+++IA
Sbjct: 61  NSMIKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIA 120

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD 387
           A  +MI GY  N R+++  ++F ++   +V+ W  MI G  Q GR +EA+ LFRQM+   
Sbjct: 121 AWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCG 180

Query: 388 IVTWNT-----------------------------------------MIAGYAQIRQMDD 406
           +    T                                         +I  YA  +QM+D
Sbjct: 181 VEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMED 240

Query: 407 AVKIFEEMGK-RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
           ++++F   GK   N V W AL++G+  N  H DALK+F  M +EG   + S+   AL++C
Sbjct: 241 SLRVFH--GKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSC 298

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
             L AL  GR+IH  A+K G   D+FVGNSLI MY +CG + +  ++FK     +++SWN
Sbjct: 299 CGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWN 358

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
           S+I G A +G    A+  F +MV   V PD +TF G+LSACSH G+   G  LF+  +E 
Sbjct: 359 SVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSEN 418

Query: 586 YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI 645
            + E  ++HYACM+D+L R+G+L+EA E+++ M +K N+ +W  LL AC MH  +++   
Sbjct: 419 KSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAER 478

Query: 646 AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705
           A + + +LEP  +S Y LLSN++A A RW +V ++R  M+  G  KQPG SWI +K   +
Sbjct: 479 AAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRN 538

Query: 706 TFLSGDPKQCRTAEICNTLKTLAAQIR 732
            FLSGD     +  I   L+ L  +++
Sbjct: 539 EFLSGDRSHPSSDRIYQKLEWLGGKLK 565



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 137/555 (24%), Positives = 257/555 (46%), Gaps = 50/555 (9%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           IT   ++ R++EA  +F ++S  +   Y  MI+ YA+N R + A +LF +MP +++VSWN
Sbjct: 2   ITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWN 61

Query: 82  SMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTA 141
           SMI G      +  AR+LFD+M    + SW  MI  + + G++E A  LF  +P + D A
Sbjct: 62  SMIKGCFDCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFR-DIA 120

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
            WN+M+ GY   G   +  +L   MP +N++SW SM+ G  ++G    A   F       
Sbjct: 121 AWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQ----- 175

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
                 M+   VE+    S              ++  +++  A    + +  ++   +  
Sbjct: 176 ------MMGCGVEVKPTSS--------------TYCCVITACANASALYQGVQIHAHV-F 214

Query: 262 RNVVAWNAMIAA-----YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
           +   +++A I+A     Y    Q+E++ R+F      N V WT ++ GY    K ++A +
Sbjct: 215 KLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALK 274

Query: 317 LLDQMPYKNI----AAQTAMISGYVQNKRMDEANQIFD---KIGTH-DVVCWNVMIKGYA 368
           +  +M  + +    ++ T+ ++     + +D   +I     K+G   DV   N +I  Y 
Sbjct: 275 VFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYY 334

Query: 369 QCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK---RRNTVSWNA 425
           +CG +++ + +F+++  K+IV+WN++I G AQ      A+  F +M +     + +++  
Sbjct: 335 RCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTG 394

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGK---KADHSTLACALSACAHLAALQLGRQ-IHHLA 481
           L+S    +        +F   ++      K DH   AC +        L+   + I ++ 
Sbjct: 395 LLSACSHSGMSQKGRCLFKYFSENKSAEVKLDH--YACMVDILGRSGKLEEAEELIRNMP 452

Query: 482 IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
           +K+  +  L V  S  TM++K    + A     D +P    ++  L   YA     ++  
Sbjct: 453 VKANSMVWL-VLLSACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVS 511

Query: 542 KLFEEMVMEGVAPDP 556
           ++  EM   G+   P
Sbjct: 512 RIRREMKQRGITKQP 526


>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
 gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
          Length = 1026

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 256/787 (32%), Positives = 410/787 (52%), Gaps = 83/787 (10%)

Query: 27   KSGRVEEAIKIFSQM----SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNS 82
            K G  EEA+K+F +M     + + V + ++I+AY   GR+++A  LF +MP RN+V+WN 
Sbjct: 238  KVGLPEEAVKVFQEMEKVGQEPDQVAFVTVINAYVDLGRLDNASDLFSRMPNRNVVAWNL 297

Query: 83   MIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL----FDLLPNKE 138
            MI+G+       EA E F  M +  + S     T  T    L     L    F LL + E
Sbjct: 298  MISGHAKGGYGVEAIEFFQNMRKAGIKS-----TRSTLGSVLSAIASLAALDFGLLVHAE 352

Query: 139  --------DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
                    +    +++V+ YAK G    AKK+ D +  +N+V WN+ML GY +NG  +  
Sbjct: 353  ALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEV 412

Query: 191  SKFFEAMEE----RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSG 242
             + F  M+      D  +++ +L     L  LD   +    I +    S +     ++  
Sbjct: 413  MELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDM 472

Query: 243  YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PERNPV 296
            YA++G + +AR+ F+ +  R+ V+WN +I  YVQ     EA  LF  M      P+   V
Sbjct: 473  YAKSGALEDARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDE--V 530

Query: 297  SWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
            S  +++     +  L++ +++    +       + + +++I  Y +   +D A++I   +
Sbjct: 531  SLASILSACASVRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACM 590

Query: 353  GTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMI-AGYAQIR----- 402
                VV  N +I GYAQ   +++A+NLFR M    +N   +T+ +++ A + Q +     
Sbjct: 591  PERSVVSMNALIAGYAQI-NLEQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGR 649

Query: 403  -----------QMDD-------------------AVKIFEEMGKRRNTVSWNALISGFLQ 432
                       Q+DD                   A  +F E    ++ V W A+ISG  Q
Sbjct: 650  QIHSLILKMGLQLDDEFLGVSLLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMISGLSQ 709

Query: 433  NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
            N+  + AL+++  M       D +T   AL ACA +++++ G + H L   +G+ +D   
Sbjct: 710  NDCSVVALQLYKEMRSCNVLPDQATFVSALRACAVVSSIKDGTETHSLIFHTGFDSDELT 769

Query: 493  GNSLITMYAKCGRIQNAELLFKD-ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
             ++L+ MYAKCG ++++  +FK+ +   DVISWNS+I G+A NG A +A+++F+EM    
Sbjct: 770  SSALVDMYAKCGDVKSSMQVFKEMSRKKDVISWNSMIVGFAKNGYAEDALRVFDEMKQSH 829

Query: 552  VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
            V PD VTF+GVL+ACSH G V  G  +F+ M  +Y ++P  +H ACM+DLL R G L EA
Sbjct: 830  VTPDDVTFLGVLTACSHSGRVSEGRLIFDMMVNLYGMQPRADHCACMVDLLGRWGSLKEA 889

Query: 612  FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEA 671
             E +  +  +P+A +W T+LGACR+H +   G+ A EKL ELEPQ +S Y LLSN++A +
Sbjct: 890  EEFINKLNFEPDAKVWATMLGACRIHGDDIRGQQAAEKLIELEPQNSSPYVLLSNIYAAS 949

Query: 672  GRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
            G WDEV  +R  M   G +K PGCSWI V  + + F++GD      +EI   LK L   +
Sbjct: 950  GNWDEVNTLRREMREKGVKKLPGCSWIVVGQETNMFVAGDKSHHSASEIDAILKDLTPLM 1009

Query: 732  RNTPLAV 738
            R     V
Sbjct: 1010 RENDYVV 1016



 Score =  222 bits (566), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 159/576 (27%), Positives = 274/576 (47%), Gaps = 93/576 (16%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIA-----GYLHNDKVKEARELFDKMF 104
           N ++  YAK   V+ A + F+Q+  +++++WNS+++     G+ H   VK    L++   
Sbjct: 98  NVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQGFPHL-VVKYFGLLWNSGV 156

Query: 105 RPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKK 161
            P+ F++A++++   R   ++  R++   +     +  + C  A++  YAK     +A+ 
Sbjct: 157 WPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCEGALIGMYAKCNFLTDARS 216

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDD 217
           + D     + VSW SM+ GY K G    A K F+ ME    E D V++  +++ YV+L  
Sbjct: 217 IFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPDQVAFVTVINAYVDLGR 276

Query: 218 LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI---------------- 261
           LD+A   F ++P +NVV+W  M+SG+A+ G  +EA   F  M                  
Sbjct: 277 LDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSA 336

Query: 262 -----------------------RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW 298
                                   NV   +++++ Y + G++E A ++F  + E+N V W
Sbjct: 337 IASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLW 396

Query: 299 TTMIDGYVRIAKLDEARRLLDQMP----YKNIAAQTAMISGYVQNKRMDEANQIFDKI-- 352
             M+ GYV+    +E   L   M     Y +    ++++S     K +D  +Q+   I  
Sbjct: 397 NAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIK 456

Query: 353 --GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKI 410
                ++   N ++  YA+ G +++A   F  + N+D V+WN +I GY            
Sbjct: 457 NKFASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGY------------ 504

Query: 411 FEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAA 470
                               +Q E  ++A  +F  M   G   D  +LA  LSACA +  
Sbjct: 505 --------------------VQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRG 544

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
           L+ G+Q+H L++K+G    L+ G+SLI MYAKCG I +A  +        V+S N+LIAG
Sbjct: 545 LEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNALIAG 604

Query: 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
           YA   N  +A+ LF +M++EG+    +TF  +L AC
Sbjct: 605 YA-QINLEQAVNLFRDMLVEGINSTEITFASLLDAC 639



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 113/478 (23%), Positives = 214/478 (44%), Gaps = 76/478 (15%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V+  +  ++   K G++E A K+F  ++++N V +N+M+  Y +NG  N+  +LF  M
Sbjct: 360 SNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNM 419

Query: 73  PQRNL----VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGEL 124
                     +++S+++       +    +L   +    F  +LF    ++  Y + G L
Sbjct: 420 KSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGAL 479

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLS- 179
           E AR+ F+L+ N+ D   WN ++ GY +  +  EA  L   M    I    VS  S+LS 
Sbjct: 480 EDARQQFELIRNR-DNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSA 538

Query: 180 -----GYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
                G  +  ++H  S   +  +E  + S + ++D Y +   +DSA K    +PE++VV
Sbjct: 539 CASVRGLEQGKQVHCLS--VKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVV 596

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN-------------------------- 268
           S   +++GYA+   + +A  LF  M +  + +                            
Sbjct: 597 SMNALIAGYAQI-NLEQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQIHSLI 655

Query: 269 --------------AMIAAYVQRGQIEEAARLFIEMPE-RNPVSWTTMIDGY-------V 306
                         +++  Y+   +  +A+ LF E    ++ V WT MI G        V
Sbjct: 656 LKMGLQLDDEFLGVSLLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMISGLSQNDCSVV 715

Query: 307 RIAKLDEARR---LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVM 363
            +    E R    L DQ  + +     A++S        +  + IF      D +  + +
Sbjct: 716 ALQLYKEMRSCNVLPDQATFVSALRACAVVSSI--KDGTETHSLIFHTGFDSDELTSSAL 773

Query: 364 IKGYAQCGRMDEAINLFRQMV-NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
           +  YA+CG +  ++ +F++M   KD+++WN+MI G+A+    +DA+++F+EM +   T
Sbjct: 774 VDMYAKCGDVKSSMQVFKEMSRKKDVISWNSMIVGFAKNGYAEDALRVFDEMKQSHVT 831



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 105/391 (26%), Positives = 178/391 (45%), Gaps = 52/391 (13%)

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
           P  +T ++   ++ +K  +   L D++P +        +S +    ++  A  +  K+G 
Sbjct: 41  PRIYTHILQNCLQKSKQVKTHSLFDEIPQR--------LSQFSTTNKIIHAQSL--KLGF 90

Query: 355 -HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEE 413
               V  NV++  YA+C  +D A   F+Q+ +KDI+ WN++++ +++       VK F  
Sbjct: 91  WSKGVLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQGFPHLVVKYFGL 150

Query: 414 MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQL 473
           +        WN   SG   NEF                     T A  LS+CA L  ++ 
Sbjct: 151 L--------WN---SGVWPNEF---------------------TFAIVLSSCARLEMVKC 178

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           GRQ+H   +K G+ +  +   +LI MYAKC  + +A  +F  A  +D +SW S+I GY  
Sbjct: 179 GRQVHCNVVKMGFESISYCEGALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIK 238

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVE 593
            G   EA+K+F+EM   G  PD V F+ V++A   +G +D    LF  M     +     
Sbjct: 239 VGLPEEAVKVFQEMEKVGQEPDQVAFVTVINAYVDLGRLDNASDLFSRMPNRNVVA---- 294

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMK---IKPNAGIWGTLLGACRMHQNIKLGRIA-VEK 649
            +  MI   ++ G   EA E  + M+   IK      G++L A      +  G +   E 
Sbjct: 295 -WNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEA 353

Query: 650 LSELEPQKTSCYALLSNMHAEAGRWDEVEKV 680
           L +         + L +M+A+ G+ +  +KV
Sbjct: 354 LKQGLHSNVYVGSSLVSMYAKCGKMEAAKKV 384


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 234/756 (30%), Positives = 401/756 (53%), Gaps = 79/756 (10%)

Query: 48  TYNSMISAYAKNGRVNDARKLFEQM--PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR 105
           T N++I+ Y + G + +AR+++ ++   +R + SWN+M+ GY+    ++EA +L  +M +
Sbjct: 178 TVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQ 237

Query: 106 PDL-----FSWALMITCYTRKG---------ELEKARELFDLLPNKEDTACWNAMVAGYA 151
             L      +  L+ +C +            E  KAR LFD+          N ++  YA
Sbjct: 238 HGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDV-------NVANCILNMYA 290

Query: 152 KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
           K G+ +EA+++ D M +K++VSW  ++ GY   G   +A + F+ M++  VV   +    
Sbjct: 291 KCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYIN 350

Query: 212 YVELDDLDSAWKFFQKIP--------EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRN 263
            +      +A K+ + +         E ++     ++  YA+ G   + R++F+++  R+
Sbjct: 351 VLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRD 410

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEAR---- 315
           ++AWN MI    + G  EEA+ ++ +M       N +++  +++  V    L   R    
Sbjct: 411 LIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHS 470

Query: 316 RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
           R++      +I+ Q A+IS Y +   + +A  +F+K+   D++ W  MI G A+ G   E
Sbjct: 471 RVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAE 530

Query: 376 AINLFRQM----VNKDIVTW-----------------------------------NTMIA 396
           A+ +F+ M    +  + VT+                                   NT++ 
Sbjct: 531 ALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVN 590

Query: 397 GYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHS 456
            Y+    + DA ++F+ M  +R+ V++NA+I G+  +    +ALK+F  + +EG K D  
Sbjct: 591 MYSMCGSVKDARQVFDRM-TQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKV 649

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
           T    L+ACA+  +L+  ++IH L +K GY++D  +GN+L++ YAKCG   +A L+F   
Sbjct: 650 TYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKM 709

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGL 576
              +VISWN++I G A +G   + ++LFE M MEG+ PD VTF+ +LSACSH GL++ G 
Sbjct: 710 MKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGR 769

Query: 577 KLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRM 636
           + F  M+  + I P +EHY CM+DLL RAG+LDE   ++K M  + N  IWG LLGACR+
Sbjct: 770 RYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRI 829

Query: 637 HQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCS 696
           H N+ +   A E   +L+P   + Y  LS+M+A AG WD   K+R  ME  G  K+PG S
Sbjct: 830 HGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRS 889

Query: 697 WIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           WIEV +++H F++ D     + +I   L  L   ++
Sbjct: 890 WIEVGDKLHYFVAEDRSHPESEKIYAELDKLTHAMK 925



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 96/198 (48%), Gaps = 6/198 (3%)

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
           A+ +   + Q+G + +       L  C  +  L  GR++H   I+   V D +  N+LI 
Sbjct: 125 AMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALIN 184

Query: 499 MYAKCGRIQNAELLFKDADPVD--VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
           MY +CG I+ A  ++   +  +  V SWN+++ GY   G   EA+KL  EM   G+A   
Sbjct: 185 MYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGR 244

Query: 557 VTFIGVLSACSHVGLVDGGLKL-FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV 615
            T + +LS+C     ++ G ++  E M      +  V +  C++++ ++ G + EA E+ 
Sbjct: 245 ATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVAN--CILNMYAKCGSIHEAREVF 302

Query: 616 KGMKIKPNAGIWGTLLGA 633
             M+ K     W  ++G 
Sbjct: 303 DKMETKSVVS-WTIIIGG 319


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 245/757 (32%), Positives = 395/757 (52%), Gaps = 72/757 (9%)

Query: 43   QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
            Q +     ++++ Y K G + DA+ +F++M +RN++SW  MI G  H  + +EA  LF +
Sbjct: 251  QSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQ 310

Query: 103  M----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGN 155
            M    F P+ +++  ++      G LE  +E+     N     D    NA+V  YAK G+
Sbjct: 311  MQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGS 370

Query: 156  YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDG 211
             ++A+ + D M  ++I SW  M+ G  ++G    A   F  M+      ++ ++  +L+ 
Sbjct: 371  IDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNA 430

Query: 212  YVELDDLDSAW-KFFQKIPEQ-NVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNVV 265
                      W K   K  E+   +S +     ++  YA+ G + +AR +FD M  R+V+
Sbjct: 431  SAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVI 490

Query: 266  AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
            +WNAM+    Q G   EA  +F++M +   V  +T     +      +A   ++++ +K+
Sbjct: 491  SWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEV-HKH 549

Query: 326  IAAQTAMISG----------YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ--CGRM 373
             A +T +IS           Y++   +D+A  +FDK+    V  WN MI G AQ  CGR 
Sbjct: 550  -AVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGR- 607

Query: 374  DEAINLFRQM-------------------VNKDIVTW-------------------NTMI 395
             EA++LF QM                   V+++ + W                   N ++
Sbjct: 608  -EALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGLVDLRVGNALV 666

Query: 396  AGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADH 455
              Y++   +  A ++F++M   RN  +W  +I G  Q+    DA   F+ M +EG   D 
Sbjct: 667  HTYSKCGNVKYAKQVFDDM-VERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDA 725

Query: 456  STLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD 515
            +T    LSACA   AL+  +++H+ A+ +G V+DL VGN+L+ MYAKCG I +A  +F D
Sbjct: 726  TTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDD 785

Query: 516  ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
                DV SW  +I G A +G   EA+  F +M  EG  P+  +++ VL+ACSH GLVD G
Sbjct: 786  MVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEG 845

Query: 576  LKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACR 635
             + F  MT+ Y IEP +EHY CM+DLL RAG L+EA   +  M I+P+   WG LLGAC 
Sbjct: 846  RRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACV 905

Query: 636  MHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGC 695
             + N+++   A ++  +L+P+  S Y LLSN++A  G+W++   VR  M+  G +K+PG 
Sbjct: 906  TYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGR 965

Query: 696  SWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            SWIEV N+IH+F+ GD     + EI   L  L  +++
Sbjct: 966  SWIEVDNRIHSFVVGDTSHPESKEIYAQLNDLIERLK 1002



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 141/506 (27%), Positives = 245/506 (48%), Gaps = 73/506 (14%)

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIE 289
           EQN+     +L  Y R GR+  AR++FD++  +N+  W  MI  Y + G  E+A R++ +
Sbjct: 150 EQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDK 209

Query: 290 MPER----NPVSWTTMIDGYVRIAKLDEARRL---LDQMPYK-NIAAQTAMISGYVQNKR 341
           M +     N +++ +++        L   +++   + Q  ++ ++  +TA+++ YV+   
Sbjct: 210 MRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGS 269

Query: 342 MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM------------------ 383
           +++A  IFDK+   +V+ W VMI G A  GR  EA +LF QM                  
Sbjct: 270 IEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNA 329

Query: 384 -----------------VNK----DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
                            VN     D+   N ++  YA+   +DDA  +F+ M   R+  S
Sbjct: 330 NASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGM-TERDIFS 388

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL--SACAHLAALQLGRQIHHL 480
           W  +I G  Q+    +A  +F+ M + G   + +T    L  SA A  +AL+  + +H  
Sbjct: 389 WTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKH 448

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEA 540
           A ++G+++DL +GN+LI MYAKCG I +A L+F      DVISWN+++ G A NG   EA
Sbjct: 449 AEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEA 508

Query: 541 IKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV--YAIEP-LVEHY-- 595
             +F +M  EG+ PD  T++ +L+         G     E + EV  +A+E  L+  +  
Sbjct: 509 FTVFLQMQQEGLVPDSTTYLSLLN-------THGSTDALEWVNEVHKHAVETGLISDFRV 561

Query: 596 -ACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE 654
            +  I +  R G +D+A  +   + ++ +   W  ++G        + GR A+    +++
Sbjct: 562 GSAFIHMYIRCGSIDDARLLFDKLSVR-HVTTWNAMIGGAAQQ---RCGREALSLFLQMQ 617

Query: 655 -----PQKTSCYALLS-NMHAEAGRW 674
                P  T+   +LS N+  EA  W
Sbjct: 618 REGFIPDATTFINILSANVDEEALEW 643



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 170/389 (43%), Gaps = 59/389 (15%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I    K G +++A  +F  M  ++ +++N+M+   A+NG  ++A  +F QM Q  LV
Sbjct: 462 NALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLV 521

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFR--------PDLFSWALMITCYTRKGELEKAREL 130
             ++     L+     +A E  +++ +         D    +  I  Y R G ++ AR L
Sbjct: 522 PDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLL 581

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL----------DAMPSKNIVS------- 173
           FD L  +  T  WNAM+ G A+     EA  L           DA    NI+S       
Sbjct: 582 FDKLSVRHVTT-WNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEA 640

Query: 174 --W-------------------NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY 212
             W                   N+++  Y+K G +  A + F+ M ER+V +W +M+ G 
Sbjct: 641 LEWVKEVHSHATDAGLVDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGL 700

Query: 213 VELDDLDSAWKFFQKIPEQNVV----SWVTMLSGYARNGRMLEARRLFDQMPIRNVVA-- 266
            +      A+  F ++  + +V    ++V++LS  A  G +   + + +      +V+  
Sbjct: 701 AQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDL 760

Query: 267 --WNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
              NA++  Y + G I++A  +F +M ER+  SWT MI G  +  +  EA     +M  +
Sbjct: 761 RVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSE 820

Query: 325 ----NIAAQTAMISGYVQNKRMDEANQIF 349
               N  +  A+++       +DE  + F
Sbjct: 821 GFKPNGYSYVAVLTACSHAGLVDEGRRQF 849



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 134/272 (49%), Gaps = 25/272 (9%)

Query: 377 INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
           + + +  + +++   N ++  Y +  ++  A ++F+++ K+ N   W  +I G+ +    
Sbjct: 142 VCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKK-NIYIWTTMIGGYAEYGHA 200

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSL 496
            DA++++  M QE  + +  T    L AC     L+ G++IH   I+SG+ +D+ V  +L
Sbjct: 201 EDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETAL 260

Query: 497 ITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
           + MY KCG I++A+L+F      +VISW  +I G A  G   EA  LF +M  EG  P+ 
Sbjct: 261 VNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNS 320

Query: 557 VTFIGVLSACSHVG-----------LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRA 605
            T++ +L+A +  G            V+ GL L     ++     LV  YA       ++
Sbjct: 321 YTYVSILNANASAGALEWVKEVHSHAVNAGLAL-----DLRVGNALVHMYA-------KS 368

Query: 606 GRLDEAFEMVKGMKIKPNAGIWGTLLGACRMH 637
           G +D+A  +  GM  + +   W  ++G    H
Sbjct: 369 GSIDDARVVFDGMT-ERDIFSWTVMIGGLAQH 399



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 107/229 (46%), Gaps = 33/229 (14%)

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
           DA+ +  +  Q+G   D  +    L  C     + L +Q+H   IKSG   +L+V N L+
Sbjct: 101 DAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLL 160

Query: 498 TMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
            +Y +CGR+Q A  +F      ++  W ++I GYA  G+A +A++++++M  E   P+ +
Sbjct: 161 RVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEI 220

Query: 558 TFIGVLSACS-----------HVGLVDGG----LKLFECMTEVYA--------------- 587
           T++ +L AC            H  ++  G    +++   +  +Y                
Sbjct: 221 TYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKM 280

Query: 588 IEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIK---PNAGIWGTLLGA 633
           +E  V  +  MI  L+  GR  EAF +   M+ +   PN+  + ++L A
Sbjct: 281 VERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNA 329


>gi|308044597|ref|NP_001182884.1| uncharacterized protein LOC100501159 [Zea mays]
 gi|238007964|gb|ACR35017.1| unknown [Zea mays]
          Length = 580

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/564 (38%), Positives = 314/564 (55%), Gaps = 39/564 (6%)

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
            +ML GY K G +  A + F+AM  ++VV+W  M+ GY     +  A + F  +PE+N  
Sbjct: 32  TAMLDGYAKAGRVDRARELFDAMPVKNVVTWTSMVSGYFRAGRVQEARELFDVMPERNDY 91

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
           SW T++ GYARNG + EAR +FD+MP RNVVAW AM+ AYV  GQI++A  LF  MPERN
Sbjct: 92  SWTTVVQGYARNGMLREAREMFDRMPQRNVVAWTAMVKAYVDCGQIQQAWELFDMMPERN 151

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMP--YKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
             SW  MI G++ I K+ EA +L ++MP  +KN+ + T M++G   N     A + FD++
Sbjct: 152 SYSWNAMISGFLSIGKVAEAVQLFERMPHRHKNVVSWTTMVAGLANNGLACRAREFFDRM 211

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFE 412
              D   WN +I  YA  G+++EA  LF  M+ KD+VTW+T+I  Y+             
Sbjct: 212 PAKDTAAWNAIITVYANNGQLNEAQRLFDSMLAKDLVTWSTIIEAYS------------- 258

Query: 413 EMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQ 472
                              +NE   +AL +F+LM       +  TL   L        + 
Sbjct: 259 -------------------KNERKHEALNMFLLMRHSAVSPNIRTLISILVISESTVEV- 298

Query: 473 LGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYA 532
             +QIH L I  G++++  +GN+L+TMY++ G + +A   FK  +  D I+W S++  +A
Sbjct: 299 --KQIHGLVIALGFLSETSLGNALLTMYSRSGDLMSAWFAFKRLEQKDAITWTSIVQAFA 356

Query: 533 INGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLV 592
            +G    A+  F +M+  G  P   TF  VLSAC HVGLV  G K+F+ +  VY +EP +
Sbjct: 357 DHGCGYHALLGFAQMLRHGYKPSSTTFTAVLSACRHVGLVGKGRKMFKSIYHVYGLEPTI 416

Query: 593 EHYACMIDLLSRAGRLDEAFEMVKGMKIK-PNAGIWGTLLGACRMHQNIKLGRIAVEKLS 651
           EHY+C++DLL RAG + EA E+V GM+    +  I  TLLGAC +H  +++ R   E L 
Sbjct: 417 EHYSCLVDLLGRAGYVREAKELVDGMQQGMRDEAILATLLGACVVHNEVEVAREVGEDLV 476

Query: 652 ELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD 711
             +P  T  Y LL+N+ A  G WDE   V   M GS A++ PG S IEV  + H F S D
Sbjct: 477 RFDPSGTGGYRLLANVFASHGMWDETANVWKVMRGSKAKRTPGFSQIEVNMRNHVFYSRD 536

Query: 712 PKQCRTAEICNTL-KTLAAQIRNT 734
            +  + AEI   L  T+A Q++ +
Sbjct: 537 QEHPQCAEIYEMLIDTIAPQMKGS 560



 Score =  225 bits (574), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 131/435 (30%), Positives = 223/435 (51%), Gaps = 42/435 (9%)

Query: 52  MISAYAKNGRVNDARKLF--EQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF 109
           M+++  +   +  A  LF       R L    +M+ GY    +V  ARELFD M   ++ 
Sbjct: 1   MVASRLRERDLTRAEALFGAAPAAARGLYLDTAMLDGYAKAGRVDRARELFDAMPVKNVV 60

Query: 110 SWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK 169
           +W  M++ Y R G +++ARELFD++P + D + W  +V GYA+ G   EA+++ D MP +
Sbjct: 61  TWTSMVSGYFRAGRVQEARELFDVMPERNDYS-WTTVVQGYARNGMLREAREMFDRMPQR 119

Query: 170 NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP 229
           N+V+W +M+  Y   G++  A + F+ M ER+  SWN M+ G++ +  +  A + F+++P
Sbjct: 120 NVVAWTAMVKAYVDCGQIQQAWELFDMMPERNSYSWNAMISGFLSIGKVAEAVQLFERMP 179

Query: 230 --EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF 287
              +NVVSW TM++G A NG    AR  FD+MP ++  AWNA+I  Y   GQ+ EA RLF
Sbjct: 180 HRHKNVVSWTTMVAGLANNGLACRAREFFDRMPAKDTAAWNAIITVYANNGQLNEAQRLF 239

Query: 288 IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT-AMISGYVQNKRMDEAN 346
             M  ++ V+W+T+I+ Y +  +  EA  +   M +  ++     +IS  V ++   E  
Sbjct: 240 DSMLAKDLVTWSTIIEAYSKNERKHEALNMFLLMRHSAVSPNIRTLISILVISESTVEVK 299

Query: 347 QIFDKIGT----HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIR 402
           QI   +       +    N ++  Y++ G +  A   F+++  KD +TW +++  +A   
Sbjct: 300 QIHGLVIALGFLSETSLGNALLTMYSRSGDLMSAWFAFKRLEQKDAITWTSIVQAFAD-- 357

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
                           +   ++AL+ GF Q             M + G K   +T    L
Sbjct: 358 ----------------HGCGYHALL-GFAQ-------------MLRHGYKPSSTTFTAVL 387

Query: 463 SACAHLAALQLGRQI 477
           SAC H+  +  GR++
Sbjct: 388 SACRHVGLVGKGRKM 402



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 176/318 (55%), Gaps = 39/318 (12%)

Query: 26  GKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIA 85
            K+GRV+ A ++F  M  KN VT+ SM+S Y + GRV +AR+LF+ MP+RN  SW +++ 
Sbjct: 39  AKAGRVDRARELFDAMPVKNVVTWTSMVSGYFRAGRVQEARELFDVMPERNDYSWTTVVQ 98

Query: 86  GYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNA 145
           GY  N  ++EARE+FD+M + ++ +W  M+  Y   G++++A ELFD++P + ++  WNA
Sbjct: 99  GYARNGMLREAREMFDRMPQRNVVAWTAMVKAYVDCGQIQQAWELFDMMPER-NSYSWNA 157

Query: 146 MVAGYAKIGNYNEAKKLLDAMP--SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           M++G+  IG   EA +L + MP   KN+VSW +M++G   NG    A +FF+ M  +D  
Sbjct: 158 MISGFLSIGKVAEAVQLFERMPHRHKNVVSWTTMVAGLANNGLACRAREFFDRMPAKDTA 217

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP--- 260
           +WN ++  Y     L+ A + F  +  +++V+W T++  Y++N R  EA  +F  M    
Sbjct: 218 AWNAIITVYANNGQLNEAQRLFDSMLAKDLVTWSTIIEAYSKNERKHEALNMFLLMRHSA 277

Query: 261 ----IRNVVA-----------------------------WNAMIAAYVQRGQIEEAARLF 287
               IR +++                              NA++  Y + G +  A   F
Sbjct: 278 VSPNIRTLISILVISESTVEVKQIHGLVIALGFLSETSLGNALLTMYSRSGDLMSAWFAF 337

Query: 288 IEMPERNPVSWTTMIDGY 305
             + +++ ++WT+++  +
Sbjct: 338 KRLEQKDAITWTSIVQAF 355



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 113/205 (55%), Gaps = 6/205 (2%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQ--KNTVTYNSMISAYAKNGRVNDARKLFEQMP 73
           ++ N  I+     G+V EA+++F +M    KN V++ +M++  A NG    AR+ F++MP
Sbjct: 153 YSWNAMISGFLSIGKVAEAVQLFERMPHRHKNVVSWTTMVAGLANNGLACRAREFFDRMP 212

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDL 133
            ++  +WN++I  Y +N ++ EA+ LFD M   DL +W+ +I  Y++     +A  +F L
Sbjct: 213 AKDTAAWNAIITVYANNGQLNEAQRLFDSMLAKDLVTWSTIIEAYSKNERKHEALNMFLL 272

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS----WNSMLSGYTKNGEMHL 189
           + +   +     +++      +  E K++   + +   +S     N++L+ Y+++G++  
Sbjct: 273 MRHSAVSPNIRTLISILVISESTVEVKQIHGLVIALGFLSETSLGNALLTMYSRSGDLMS 332

Query: 190 ASKFFEAMEERDVVSWNLMLDGYVE 214
           A   F+ +E++D ++W  ++  + +
Sbjct: 333 AWFAFKRLEQKDAITWTSIVQAFAD 357



 Score = 44.3 bits (103), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 60/123 (48%), Gaps = 9/123 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  +T   +SG +  A   F ++ QK+ +T+ S++ A+A +G    A   F QM +    
Sbjct: 318 NALLTMYSRSGDLMSAWFAFKRLEQKDAITWTSIVQAFADHGCGYHALLGFAQMLRHGYK 377

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARE 129
               ++ ++++   H   V + R++F  ++      P +  ++ ++    R G + +A+E
Sbjct: 378 PSSTTFTAVLSACRHVGLVGKGRKMFKSIYHVYGLEPTIEHYSCLVDLLGRAGYVREAKE 437

Query: 130 LFD 132
           L D
Sbjct: 438 LVD 440


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 235/748 (31%), Positives = 398/748 (53%), Gaps = 43/748 (5%)

Query: 24  QLGKSGRVEEAIKIFSQMSQK----NTVTYNSMISAYAKNGRVNDARKLFEQMPQR---- 75
           +L K+GR+ EAI++   + Q+    N+ TY  +I   AK  R  D + + +Q+ +     
Sbjct: 30  RLCKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEI 89

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL- 134
           ++   NS+I  Y   + V  A ++F +M   D+ +W+ MI  Y       KA + F+ + 
Sbjct: 90  DIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMT 149

Query: 135 -----PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNGEMH 188
                PN+            Y+ +    +   ++ AM    ++    ++++ Y+K GE+ 
Sbjct: 150 DANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEIS 209

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYA 244
           +A + F  M ER+VVSW  ++    +   L+ A++ ++++ +     N V++V++L+   
Sbjct: 210 VACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCN 269

Query: 245 RNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTT 300
               +   RR+   +  R    +++  NA+I  Y +   ++EA  +F  M +R+ +SW+ 
Sbjct: 270 TPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSA 329

Query: 301 MIDGYVRIA-----KLDEARRLLDQMP----YKNIAAQTAMISGYVQNKRMDEANQI--- 348
           MI GY +        +DE  +LL++M     + N     +++     +  +++  QI   
Sbjct: 330 MIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAE 389

Query: 349 FDKIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDA 407
             K+G   D      +   YA+CG + EA  +F +M NK++V W + ++ Y +   +  A
Sbjct: 390 LSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSA 449

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ---EGKKADHSTLACALSA 464
            K+F EM   RN VSWN +I+G+ QN    D +K+F L++    EG + D  T+   L A
Sbjct: 450 EKVFSEM-PTRNVVSWNLMIAGYAQNG---DIVKVFELLSSMKAEGFQPDRVTVITILEA 505

Query: 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
           C  LA L+ G+ +H  A+K G  +D  V  SLI MY+KCG++  A  +F      D ++W
Sbjct: 506 CGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAW 565

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           N+++AGY  +G+  EA+ LF+ M+ E V+P+ +T   V+SACS  GLV  G ++F  M E
Sbjct: 566 NAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQE 625

Query: 585 VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
            + + P  +HY CM+DLL RAGRL EA E ++ M  +P+  +W  LLGAC+ H N++L  
Sbjct: 626 DFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAE 685

Query: 645 IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQI 704
            A   + ELEP   S Y  LSN++A+AGRWD+  KVR  M+  G +K  G S IE+  +I
Sbjct: 686 RAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRI 745

Query: 705 HTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           HTF++ D        I   L+TL  +++
Sbjct: 746 HTFVAEDCAHPEIDAIHAELETLTKEMK 773



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 140/602 (23%), Positives = 278/602 (46%), Gaps = 92/602 (15%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           ++  N  I    K   V  A ++F +M+ ++ VT++SMI+AYA N     A   FE+M  
Sbjct: 91  IYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTD 150

Query: 75  RNL----VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEK 126
            N+    +++ S++    +   +++ R++   +       D+     +IT Y++ GE+  
Sbjct: 151 ANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISV 210

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA----KKLLDAMPSKNIVSWNSMLSGYT 182
           A E+F  +  + +   W A++   A+    NEA    +++L A  S N V++ S+L+   
Sbjct: 211 ACEVFHKMTER-NVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCN 269

Query: 183 KNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
               ++   +    + ER    D++  N ++  Y + + +  A + F ++ +++V+SW  
Sbjct: 270 TPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSA 329

Query: 239 MLSGYARNG-----------RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF 287
           M++GYA++G           ++LE  R     P  N V + +++ A    G +E+  ++ 
Sbjct: 330 MIAGYAQSGYKDKESIDEVFQLLERMRREGVFP--NKVTFMSILRACTAHGALEQGRQIH 387

Query: 288 IEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMD 343
            E+     E +    T + + Y +   + EA ++  +M  KN+ A T+ +S Y++   + 
Sbjct: 388 AELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLS 447

Query: 344 EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-------------------- 383
            A ++F ++ T +VV WN+MI GYAQ G + +   L   M                    
Sbjct: 448 SAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACG 507

Query: 384 -------------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
                              +  D V   ++I  Y++  Q+ +A  +F++M   R+TV+WN
Sbjct: 508 ALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSN-RDTVAWN 566

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL---- 480
           A+++G+ Q+   L+A+ +F  M +E    +  TL   +SAC+    +Q GR+I  +    
Sbjct: 567 AMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQED 626

Query: 481 ----AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD--ADPVDVISWNSLIAGYAIN 534
                 K  Y         ++ +  + GR+Q AE   +    +P D+  W++L+     +
Sbjct: 627 FKMTPRKQHY-------GCMVDLLGRAGRLQEAEEFIQSMPCEP-DISVWHALLGACKSH 678

Query: 535 GN 536
            N
Sbjct: 679 NN 680


>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Glycine max]
          Length = 849

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 240/753 (31%), Positives = 400/753 (53%), Gaps = 65/753 (8%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           Q +    N+++ AY+K    +DA+KLF+ MP RNLV+W+SM++ Y  +    EA  LF +
Sbjct: 84  QHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQHGYSVEALLLFCR 143

Query: 103 MFR-----PDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIG 154
             R     P+ +  A ++   T+ G L +A +L   +      +D     +++  YAK G
Sbjct: 144 FMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRG 203

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE 214
             +EA+ + D +  K  V+W ++++GY K G   ++ K F  M E DV     ++   + 
Sbjct: 204 YVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLS 263

Query: 215 ----LDDLDSAWKFFQKIPEQNVVSWVTMLSG----YARNGRMLEARRLFDQMPIRNVVA 266
               L+ L+   +    +  +     V++++G    Y +  ++   R+LF+++  ++VV+
Sbjct: 264 ACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVS 323

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
           W  MIA  +Q     +A  LF+EM  +    +    T++++    +  L + R++     
Sbjct: 324 WTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAI 383

Query: 323 YKNIA----AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
             NI      +  +I  Y +   +  A ++FD +   +VV +N MI+GY++  ++ EA++
Sbjct: 384 KVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALD 443

Query: 379 LFRQM---------------------------------------VNKDIVTWNTMIAGYA 399
           LFR+M                                       V+ D    + +I  Y+
Sbjct: 444 LFREMRLSLSPPTLLTFVSLLGLSSSLFLLELSSQIHCLIIKFGVSLDSFAGSALIDVYS 503

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
           +   + DA  +FEE+   R+ V WNA+ SG+ Q   + ++LK++  +     K +  T A
Sbjct: 504 KCSCVGDARLVFEEI-YDRDIVVWNAMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFA 562

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
             ++A +++A+L+ G+Q H+  IK G  +D FV NSL+ MYAKCG I+ +   F   +  
Sbjct: 563 AVIAAASNIASLRHGQQFHNQVIKMGLDDDPFVTNSLVDMYAKCGSIEESHKAFSSTNQR 622

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
           D+  WNS+I+ YA +G+A +A+++FE M+MEGV P+ VTF+G+LSACSH GL+D G   F
Sbjct: 623 DIACWNSMISTYAQHGDAAKALEVFERMIMEGVKPNYVTFVGLLSACSHAGLLDLGFHHF 682

Query: 580 ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
           E M++ + IEP ++HYACM+ LL RAG++ EA E VK M IKP A +W +LL ACR+  +
Sbjct: 683 ESMSK-FGIEPGIDHYACMVSLLGRAGKIYEAKEFVKKMPIKPAAVVWRSLLSACRVSGH 741

Query: 640 IKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
           ++LG  A E     +P  +  Y LLSN+ A  G W  V  VR  M+ S   K+PG SWIE
Sbjct: 742 VELGTYAAEMAISCDPADSGSYILLSNIFASKGMWASVRMVREKMDMSRVVKEPGWSWIE 801

Query: 700 VKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           V N++H F++ D     +  I   L  L  QI+
Sbjct: 802 VNNEVHRFIARDTAHRDSTLISLVLDNLILQIK 834



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 131/434 (30%), Positives = 211/434 (48%), Gaps = 64/434 (14%)

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG----EMHLAS 191
           ++ D    N ++  Y+K+   ++A+KL D MP +N+V+W+SM+S YT++G     + L  
Sbjct: 83  HQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQHGYSVEALLLFC 142

Query: 192 KFFEAMEER-DVVSWNLMLDGYVELDDLDSAWKFFQKIPE----QNVVSWVTMLSGYARN 246
           +F  +  E+ +      ++    +L +L  A +    + +    Q+V    +++  YA+ 
Sbjct: 143 RFMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKR 202

Query: 247 GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYV 306
           G + EAR +FD + ++  V W A+IA Y + G+ E + +LF +M E +        D YV
Sbjct: 203 GYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGD-----VYPDRYV 257

Query: 307 RIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG 366
            I+ +  A  +L+ +           I GYV  +  D            DV   N +I  
Sbjct: 258 -ISSVLSACSMLEFLE------GGKQIHGYVLRRGFDM-----------DVSVVNGIIDF 299

Query: 367 YAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNAL 426
           Y +C ++     LF ++V+KD+V+W TMIAG  Q                          
Sbjct: 300 YLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQ-------------------------- 333

Query: 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
                 N FH DA+ +FV M ++G K D       L++C  L ALQ GRQ+H  AIK   
Sbjct: 334 ------NSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNI 387

Query: 487 VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEE 546
            ND FV N LI MYAKC  + NA  +F     ++V+S+N++I GY+      EA+ LF E
Sbjct: 388 DNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFRE 447

Query: 547 MVMEGVAPDPVTFI 560
           M +    P  +TF+
Sbjct: 448 MRLSLSPPTLLTFV 461



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 89/183 (48%), Gaps = 23/183 (12%)

Query: 475 RQIH-HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           ++IH H+ +   + +D+F+ N+L+  Y+K     +A+ LF      ++++W+S+++ Y  
Sbjct: 71  KKIHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQ 130

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFI--GVLSACSHVGLVDGGLKLFECMT------EV 585
           +G + EA+ LF    M   +  P  +I   V+ AC+ +G +   L+L   +       +V
Sbjct: 131 HGYSVEALLLFCRF-MRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDV 189

Query: 586 YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI 645
           Y    L++ YA       + G +DEA  +  G+K+K     W  ++         KLGR 
Sbjct: 190 YVGTSLIDFYA-------KRGYVDEARLIFDGLKVKTTV-TWTAIIAG-----YAKLGRS 236

Query: 646 AVE 648
            V 
Sbjct: 237 EVS 239


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 238/727 (32%), Positives = 393/727 (54%), Gaps = 69/727 (9%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           N +I  YAKNG V  AR++F+++  R+ VSW +M++GY  +   KEA  L+ +M      
Sbjct: 82  NLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVI 141

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKL 162
           P  +  + +++  T+     + R +   +  +    +T   NA++A Y   G++  A+++
Sbjct: 142 PTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERV 201

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME------------------------ 198
              M   + V++N+++SG+ + G    A + F+ M+                        
Sbjct: 202 FCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDL 261

Query: 199 ---------------ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGY 243
                            D ++   +LD YV+  D+++A   F      NVV W  ML  Y
Sbjct: 262 QKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAY 321

Query: 244 ARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIE---EAARLFIEMP-ERNP 295
            +   + ++  +F QM       N   +  ++      GQIE   +   L I+   E + 
Sbjct: 322 GQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDM 381

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
                +ID Y +   LD+AR++L+ +  +++ + T+MI+GYVQ+   +EA   F ++   
Sbjct: 382 YVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEM--Q 439

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMVN-----------KDIVTWNTMIAGYAQIRQM 404
           D   W   I G A        I   RQ +             DI  WNT++  YA+  + 
Sbjct: 440 DCGVWPDNI-GLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRS 498

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSA 464
           ++A  +F E+ + ++ ++WN LISGF Q+  +  AL +F+ M Q G K +  T   A+SA
Sbjct: 499 EEAFSLFREI-EHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISA 557

Query: 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
            A+LA ++ G+Q+H  A+K+G+ ++  V N+LI++Y KCG I++A+++F +    + +SW
Sbjct: 558 LANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSW 617

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           N++I   + +G   EA+ LF++M  EG+ P+ VTFIGVL+ACSHVGLV+ GL  F+ M+ 
Sbjct: 618 NTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSN 677

Query: 585 VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
           VY + P+ +HYAC++D+L RAG+LD A   V  M I  NA IW TLL AC++H+NI++G 
Sbjct: 678 VYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGE 737

Query: 645 IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQI 704
           +A + L ELEP  ++ Y LLSN +A  G+W   ++VR  M+  G +K+PG SWIEVKN +
Sbjct: 738 LAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAV 797

Query: 705 HTFLSGD 711
           H F  GD
Sbjct: 798 HAFFVGD 804



 Score =  108 bits (271), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 138/279 (49%), Gaps = 36/279 (12%)

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMG 415
           D +  N++I  YA+ G + +A  +F+++ ++D V+W  M++GYAQ     +A +++ +M 
Sbjct: 77  DRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQM- 135

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
                  W A+I                              L+  LSAC        GR
Sbjct: 136 ------HWTAVIP-------------------------TPYVLSSVLSACTKGKLFAQGR 164

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
            IH    K  + ++ FVGN+LI +Y   G  + AE +F D    D +++N+LI+G+A  G
Sbjct: 165 MIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCG 224

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV-YAIEPLVEH 594
           +   A+++F+EM + G+ PD VT   +L+AC+ VG +  G +L   + +   + + + E 
Sbjct: 225 HGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITE- 283

Query: 595 YACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
              ++DL  + G ++ A ++   +  + N  +W  +L A
Sbjct: 284 -GSLLDLYVKCGDIETAHDIFN-LGDRTNVVLWNLMLVA 320



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 1/111 (0%)

Query: 458 LACALSACAHLA-ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
           L CAL AC        L  +IH  ++  G   D  +GN LI +YAK G +  A  +FK+ 
Sbjct: 45  LTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKEL 104

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
              D +SW ++++GYA +G   EA +L+ +M    V P P     VLSAC+
Sbjct: 105 SSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACT 155


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 236/774 (30%), Positives = 392/774 (50%), Gaps = 121/774 (15%)

Query: 49  YNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL 108
           +NS+++ YAK G  N A K+F ++P+R++VSW ++I G++       A  LF +M R  +
Sbjct: 166 WNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGV 225

Query: 109 ----FSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLD 164
               F++A  +   +   +LE  +++                 A   K+G++++      
Sbjct: 226 EANEFTYATALKACSMCLDLEFGKQVH----------------AEAIKVGDFSD------ 263

Query: 165 AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKF 224
                 +   ++++  Y K GEM LA + F  M +++ VSWN +L+G+ ++ D +     
Sbjct: 264 ------LFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNL 317

Query: 225 FQKIPEQNV----VSWVTMLSGYARNGRML------------------------------ 250
           F ++    +     +  T+L G A +G +                               
Sbjct: 318 FCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSK 377

Query: 251 -----EARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTM 301
                +A ++F ++   +VV+W+A+I    Q+GQ  EAA +F  M       N  +  ++
Sbjct: 378 CGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASL 437

Query: 302 IDGYVRIAKLDEARRLLD-----QMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHD 356
           +     +  L     +          Y N     A+++ Y++   + +  ++F+     D
Sbjct: 438 VSAATDLGDLYYGESIHACVCKYGFEYDNTVCN-ALVTMYMKIGSVQDGCRVFEATTNRD 496

Query: 357 VVCWNVMIKGYAQCGRMDEAINLFRQMV----NKDIVTW--------------------- 391
           ++ WN ++ G+      D  + +F QM+    N ++ T+                     
Sbjct: 497 LISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHA 556

Query: 392 --------------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHL 437
                           ++  YA+ R ++DA  IF  + KR +  +W  +++G+ Q+    
Sbjct: 557 QIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKR-DLFAWTVIVAGYAQDGQGE 615

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
            A+K F+ M +EG K +  TLA +LS C+ +A L  GRQ+H +AIK+G   D+FV ++L+
Sbjct: 616 KAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALV 675

Query: 498 TMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
            MYAKCG +++AE++F      D +SWN++I GY+ +G   +A+K FE M+ EG  PD V
Sbjct: 676 DMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEV 735

Query: 558 TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKG 617
           TFIGVLSACSH+GL++ G K F  ++++Y I P +EHYACM+D+L RAG+  E    ++ 
Sbjct: 736 TFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEE 795

Query: 618 MKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEV 677
           MK+  N  IW T+LGAC+MH NI+ G  A  KL ELEP+  S Y LLSNM A  G WD+V
Sbjct: 796 MKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDV 855

Query: 678 EKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
             VR  M   G +K+PGCSW+EV  Q+H FLS D    +  EI   L+ L  ++
Sbjct: 856 TNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKL 909



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 82/170 (48%), Gaps = 2/170 (1%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           L  CA    L  G+ IH   IKSG   D  + NSL+ +YAKCG    A  +F +    DV
Sbjct: 135 LRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDV 194

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC 581
           +SW +LI G+   G  + A+ LF EM  EGV  +  T+   L ACS    ++ G ++   
Sbjct: 195 VSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAE 254

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
             +V     L    A ++DL ++ G +  A  +   M  K NA  W  LL
Sbjct: 255 AIKVGDFSDLFVGSA-LVDLYAKCGEMVLAERVFLCMP-KQNAVSWNALL 302


>gi|414873978|tpg|DAA52535.1| TPA: hypothetical protein ZEAMMB73_896450 [Zea mays]
 gi|414873979|tpg|DAA52536.1| TPA: hypothetical protein ZEAMMB73_896450 [Zea mays]
          Length = 701

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/564 (38%), Positives = 314/564 (55%), Gaps = 39/564 (6%)

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
            +ML GY K G +  A + F+AM  ++VV+W  M+ GY     +  A + F  +PE+N  
Sbjct: 153 TAMLDGYAKAGRVDRARELFDAMPVKNVVTWTSMVSGYFRAGRVQEARELFDVMPERNDY 212

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
           SW T++ GYARNG + EAR +FD+MP RNVVAW AM+ AYV  GQI++A  LF  MPERN
Sbjct: 213 SWTTVVQGYARNGMLREAREMFDRMPQRNVVAWTAMVKAYVDCGQIQQAWELFDMMPERN 272

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMP--YKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
             SW  MI G++ I K+ EA +L ++MP  +KN+ + T M++G   N     A + FD++
Sbjct: 273 SYSWNAMISGFLSIGKVAEAVQLFERMPHRHKNVVSWTTMVAGLANNGLACRAREFFDRM 332

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFE 412
              D   WN +I  YA  G+++EA  LF  M+ KD+VTW+T+I  Y+             
Sbjct: 333 PAKDTAAWNAIITVYANNGQLNEAQRLFDSMLAKDLVTWSTIIEAYS------------- 379

Query: 413 EMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQ 472
                              +NE   +AL +F+LM       +  TL   L        + 
Sbjct: 380 -------------------KNERKHEALNMFLLMRHSAVSPNIRTLISILVISESTVEV- 419

Query: 473 LGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYA 532
             +QIH L I  G++++  +GN+L+TMY++ G + +A   FK  +  D I+W S++  +A
Sbjct: 420 --KQIHGLVIALGFLSETSLGNALLTMYSRSGDLMSAWFAFKRLEQKDAITWTSIVQAFA 477

Query: 533 INGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLV 592
            +G    A+  F +M+  G  P   TF  VLSAC HVGLV  G K+F+ +  VY +EP +
Sbjct: 478 DHGCGYHALLGFAQMLRHGYKPSSTTFTAVLSACRHVGLVGKGRKMFKSIYHVYGLEPTI 537

Query: 593 EHYACMIDLLSRAGRLDEAFEMVKGMKIK-PNAGIWGTLLGACRMHQNIKLGRIAVEKLS 651
           EHY+C++DLL RAG + EA E+V GM+    +  I  TLLGAC +H  +++ R   E L 
Sbjct: 538 EHYSCLVDLLGRAGYVREAKELVDGMQQGMRDEAILATLLGACVVHNEVEVAREVGEDLV 597

Query: 652 ELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD 711
             +P  T  Y LL+N+ A  G WDE   V   M GS A++ PG S IEV  + H F S D
Sbjct: 598 RFDPSGTGGYRLLANVFASHGMWDETANVWKVMRGSKAKRTPGFSQIEVNMRNHVFYSRD 657

Query: 712 PKQCRTAEICNTL-KTLAAQIRNT 734
            +  + AEI   L  T+A Q++ +
Sbjct: 658 QEHPQCAEIYEMLIDTIAPQMKGS 681



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 132/438 (30%), Positives = 225/438 (51%), Gaps = 42/438 (9%)

Query: 49  YNSMISAYAKNGRVNDARKLF--EQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP 106
           Y +M+++  +   +  A  LF       R L    +M+ GY    +V  ARELFD M   
Sbjct: 119 YAAMVASRLRERDLTRAEALFGAAPAAARGLYLDTAMLDGYAKAGRVDRARELFDAMPVK 178

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           ++ +W  M++ Y R G +++ARELFD++P + D + W  +V GYA+ G   EA+++ D M
Sbjct: 179 NVVTWTSMVSGYFRAGRVQEARELFDVMPERNDYS-WTTVVQGYARNGMLREAREMFDRM 237

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
           P +N+V+W +M+  Y   G++  A + F+ M ER+  SWN M+ G++ +  +  A + F+
Sbjct: 238 PQRNVVAWTAMVKAYVDCGQIQQAWELFDMMPERNSYSWNAMISGFLSIGKVAEAVQLFE 297

Query: 227 KIP--EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA 284
           ++P   +NVVSW TM++G A NG    AR  FD+MP ++  AWNA+I  Y   GQ+ EA 
Sbjct: 298 RMPHRHKNVVSWTTMVAGLANNGLACRAREFFDRMPAKDTAAWNAIITVYANNGQLNEAQ 357

Query: 285 RLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT-AMISGYVQNKRMD 343
           RLF  M  ++ V+W+T+I+ Y +  +  EA  +   M +  ++     +IS  V ++   
Sbjct: 358 RLFDSMLAKDLVTWSTIIEAYSKNERKHEALNMFLLMRHSAVSPNIRTLISILVISESTV 417

Query: 344 EANQIFDKIGT----HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYA 399
           E  QI   +       +    N ++  Y++ G +  A   F+++  KD +TW +++  +A
Sbjct: 418 EVKQIHGLVIALGFLSETSLGNALLTMYSRSGDLMSAWFAFKRLEQKDAITWTSIVQAFA 477

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
                              +   ++AL+ GF Q             M + G K   +T  
Sbjct: 478 D------------------HGCGYHALL-GFAQ-------------MLRHGYKPSSTTFT 505

Query: 460 CALSACAHLAALQLGRQI 477
             LSAC H+  +  GR++
Sbjct: 506 AVLSACRHVGLVGKGRKM 523



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 176/318 (55%), Gaps = 39/318 (12%)

Query: 26  GKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIA 85
            K+GRV+ A ++F  M  KN VT+ SM+S Y + GRV +AR+LF+ MP+RN  SW +++ 
Sbjct: 160 AKAGRVDRARELFDAMPVKNVVTWTSMVSGYFRAGRVQEARELFDVMPERNDYSWTTVVQ 219

Query: 86  GYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNA 145
           GY  N  ++EARE+FD+M + ++ +W  M+  Y   G++++A ELFD++P + ++  WNA
Sbjct: 220 GYARNGMLREAREMFDRMPQRNVVAWTAMVKAYVDCGQIQQAWELFDMMPER-NSYSWNA 278

Query: 146 MVAGYAKIGNYNEAKKLLDAMP--SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           M++G+  IG   EA +L + MP   KN+VSW +M++G   NG    A +FF+ M  +D  
Sbjct: 279 MISGFLSIGKVAEAVQLFERMPHRHKNVVSWTTMVAGLANNGLACRAREFFDRMPAKDTA 338

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP--- 260
           +WN ++  Y     L+ A + F  +  +++V+W T++  Y++N R  EA  +F  M    
Sbjct: 339 AWNAIITVYANNGQLNEAQRLFDSMLAKDLVTWSTIIEAYSKNERKHEALNMFLLMRHSA 398

Query: 261 ----IRNVVA-----------------------------WNAMIAAYVQRGQIEEAARLF 287
               IR +++                              NA++  Y + G +  A   F
Sbjct: 399 VSPNIRTLISILVISESTVEVKQIHGLVIALGFLSETSLGNALLTMYSRSGDLMSAWFAF 458

Query: 288 IEMPERNPVSWTTMIDGY 305
             + +++ ++WT+++  +
Sbjct: 459 KRLEQKDAITWTSIVQAF 476



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 113/205 (55%), Gaps = 6/205 (2%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQ--KNTVTYNSMISAYAKNGRVNDARKLFEQMP 73
           ++ N  I+     G+V EA+++F +M    KN V++ +M++  A NG    AR+ F++MP
Sbjct: 274 YSWNAMISGFLSIGKVAEAVQLFERMPHRHKNVVSWTTMVAGLANNGLACRAREFFDRMP 333

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDL 133
            ++  +WN++I  Y +N ++ EA+ LFD M   DL +W+ +I  Y++     +A  +F L
Sbjct: 334 AKDTAAWNAIITVYANNGQLNEAQRLFDSMLAKDLVTWSTIIEAYSKNERKHEALNMFLL 393

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS----WNSMLSGYTKNGEMHL 189
           + +   +     +++      +  E K++   + +   +S     N++L+ Y+++G++  
Sbjct: 394 MRHSAVSPNIRTLISILVISESTVEVKQIHGLVIALGFLSETSLGNALLTMYSRSGDLMS 453

Query: 190 ASKFFEAMEERDVVSWNLMLDGYVE 214
           A   F+ +E++D ++W  ++  + +
Sbjct: 454 AWFAFKRLEQKDAITWTSIVQAFAD 478



 Score = 43.5 bits (101), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 60/123 (48%), Gaps = 9/123 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  +T   +SG +  A   F ++ QK+ +T+ S++ A+A +G    A   F QM +    
Sbjct: 439 NALLTMYSRSGDLMSAWFAFKRLEQKDAITWTSIVQAFADHGCGYHALLGFAQMLRHGYK 498

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARE 129
               ++ ++++   H   V + R++F  ++      P +  ++ ++    R G + +A+E
Sbjct: 499 PSSTTFTAVLSACRHVGLVGKGRKMFKSIYHVYGLEPTIEHYSCLVDLLGRAGYVREAKE 558

Query: 130 LFD 132
           L D
Sbjct: 559 LVD 561


>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 642

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/597 (34%), Positives = 338/597 (56%), Gaps = 9/597 (1%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N ++  Y++ G  + A K+ D +   N   W S++ GY +N +   A   F  M    + 
Sbjct: 39  NKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPIS 98

Query: 204 SWNLMLDGYVE-------LDDLDSAWKFFQKIPEQ-NVVSWVTMLSGYARNGRMLEARRL 255
             N  +   ++            + + F  K     +++   ++L  + R  ++  AR+ 
Sbjct: 99  VLNFTISSVLKALARLTRFKGGQAVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQA 158

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR 315
           FD+M  +++V+WN MI+ Y    +++ A + F  MPERN VSWT+MI GYV+   + EA+
Sbjct: 159 FDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQ 218

Query: 316 RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
            L D MP K++A+   M+SGY+       A  IF K+  HD   WN+MI G+ + G ++ 
Sbjct: 219 VLFDSMPVKDLASWNVMVSGYMDIGDCVNARIIFGKMPIHDTGSWNIMISGFCKAGELES 278

Query: 376 AINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEF 435
           A + F +M NK++++W  M+ GY +    + A  +F++M   +N V+W+ +I G+ +N  
Sbjct: 279 AKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQM-PMKNLVTWSTMIGGYARNGQ 337

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS 495
            L AL++F    ++  K D + +   +SAC+ L  +     I H  +    ++DL V  S
Sbjct: 338 PLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTS 397

Query: 496 LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555
           LI MYAKCG I+ A  +F+ A P D++ ++++IA  A +G   +AI LF++M    + PD
Sbjct: 398 LIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPD 457

Query: 556 PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV 615
            VTF+GVL+AC+H GLVD G K F+ MTE + I+P  +HYAC++DLL R G L+EA+ ++
Sbjct: 458 SVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLI 517

Query: 616 KGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWD 675
           + M I P++ +WG LL ACR+H N++L  +A  +L ++EP  +  Y LLSN++A AGRW 
Sbjct: 518 RNMPIAPHSVVWGALLAACRVHCNVQLAEVAAAELFKIEPDNSGNYILLSNIYAAAGRWG 577

Query: 676 EVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            V KVR  +     +K  G SWIE+ + +H F+ GD     +  I   L  L   ++
Sbjct: 578 SVAKVRAKIREHRVRKNRGSSWIELSHVVHEFVMGDMSHTDSDSISLILYLLCEDMK 634



 Score =  234 bits (598), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 133/442 (30%), Positives = 232/442 (52%), Gaps = 16/442 (3%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL- 108
           N ++  Y++ G  + A K+F+++ Q N   W S+I GY+ N +  EA  LF +M R  + 
Sbjct: 39  NKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPIS 98

Query: 109 ---FSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKL 162
              F+ + ++    R    +  + ++  +       D    N+++  + +    + A++ 
Sbjct: 99  VLNFTISSVLKALARLTRFKGGQAVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQA 158

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAW 222
            D M  K+IVSWN M+SGY  N  + +A KFF+ M ER+VVSW  M+ GYV+  D+  A 
Sbjct: 159 FDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQ 218

Query: 223 KFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEE 282
             F  +P +++ SW  M+SGY   G  + AR +F +MPI +  +WN MI+ + + G++E 
Sbjct: 219 VLFDSMPVKDLASWNVMVSGYMDIGDCVNARIIFGKMPIHDTGSWNIMISGFCKAGELES 278

Query: 283 AARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRM 342
           A   F  MP +N +SW  M+DGY++    + AR L DQMP KN+   + MI GY +N + 
Sbjct: 279 AKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQP 338

Query: 343 DEANQIFDKIGTHDVVCWNVMIKGY----AQCGRMDEAINLFRQMVN----KDIVTWNTM 394
            +A ++F++    D+      I G     +Q G +D A ++    V      D+  + ++
Sbjct: 339 LKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSL 398

Query: 395 IAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
           I  YA+   ++ A+++F EM   ++ + ++ +I+    +    DA+ +F  M +   K D
Sbjct: 399 IDMYAKCGSIEKALQMF-EMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPD 457

Query: 455 HSTLACALSACAHLAALQLGRQ 476
             T    L+AC H   +  GR+
Sbjct: 458 SVTFLGVLTACNHGGLVDEGRK 479



 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 123/378 (32%), Positives = 209/378 (55%), Gaps = 36/378 (9%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           + +  NS++  + +  +V+ AR+ F++M ++++VSWN MI+GY +ND+V  AR+ FD+M 
Sbjct: 135 DLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMP 194

Query: 105 RPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLD 164
             ++ SW  MI  Y + G++ +A+ LFD +P K D A WN MV+GY  IG+   A+ +  
Sbjct: 195 ERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVK-DLASWNVMVSGYMDIGDCVNARIIFG 253

Query: 165 AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKF 224
            MP  +  SWN M+SG+ K GE+  A  FF+ M  ++V+SW +MLDGY++  D + A   
Sbjct: 254 KMPIHDTGSWNIMISGFCKAGELESAKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCL 313

Query: 225 FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQI 280
           F ++P +N+V+W TM+ GYARNG+ L+A  LF++   +++         +I+A  Q G I
Sbjct: 314 FDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGII 373

Query: 281 EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340
           + A                ++I  YV  + L + R              T++I  Y +  
Sbjct: 374 DAA---------------ESIIHNYVGPSLLSDLRVF------------TSLIDMYAKCG 406

Query: 341 RMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIA 396
            +++A Q+F+     D++C++ MI   A  G   +AI LF +M    +  D VT+  ++ 
Sbjct: 407 SIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLT 466

Query: 397 GYAQIRQMDDAVKIFEEM 414
                  +D+  K F++M
Sbjct: 467 ACNHGGLVDEGRKYFKQM 484



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/398 (29%), Positives = 202/398 (50%), Gaps = 19/398 (4%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           QN  +    +  +V+ A + F +M +K+ V++N MIS Y  N RV+ ARK F++MP+RN+
Sbjct: 139 QNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNV 198

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
           VSW SMI GY+    + EA+ LFD M   DL SW +M++ Y   G+   AR +F  +P  
Sbjct: 199 VSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDCVNARIIFGKMP-I 257

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            DT  WN M++G+ K G    AK   D MP+KN++SW  ML GY KNG+ + A   F+ M
Sbjct: 258 HDTGSWNIMISGFCKAGELESAKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCLFDQM 317

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEAR 253
             +++V+W+ M+ GY        A + F++  EQ++       + ++S  ++ G +  A 
Sbjct: 318 PMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAE 377

Query: 254 RLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIA 309
            +         + ++  + ++I  Y + G IE+A ++F     ++ + ++TMI       
Sbjct: 378 SIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHG 437

Query: 310 KLDEARRLLDQMPYKNIAAQTAMISGYV----QNKRMDEANQIFDKIGTHDVV-----CW 360
              +A  L D+M   NI   +    G +        +DE  + F ++     +      +
Sbjct: 438 LGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHY 497

Query: 361 NVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAG 397
             ++    + G ++EA NL R M +    V W  ++A 
Sbjct: 498 ACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAA 535



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 111/449 (24%), Positives = 202/449 (44%), Gaps = 73/449 (16%)

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVR 307
           + + AR L +     +    N ++  Y + G  + A ++F E+ + N   WT++I GYV 
Sbjct: 19  KSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVE 78

Query: 308 IAKLDEARRLLDQMPYKNIA---------------------------------------A 328
             + DEA  L  QM  + I+                                        
Sbjct: 79  NRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFVLKYGFAFDLIV 138

Query: 329 QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
           Q +++  +++ +++D A Q FD++   D+V WN+MI GY    R+D A   F +M  +++
Sbjct: 139 QNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNV 198

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
           V+W +MI GY +   M +A  +F+ M   ++  SWN ++SG++     ++A  IF     
Sbjct: 199 VSWTSMICGYVKAGDMAEAQVLFDSM-PVKDLASWNVMVSGYMDIGDCVNARIIF----- 252

Query: 449 EGKKADHSTLACALSACAHLAALQL-------GRQIHHLAIKSGYVNDLFVGNSLITMYA 501
            GK   H T +  +       A +L        R  +   I  G + D ++ N       
Sbjct: 253 -GKMPIHDTGSWNIMISGFCKAGELESAKDFFDRMPNKNVISWGIMLDGYIKN------- 304

Query: 502 KCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIG 561
             G    A  LF      ++++W+++I GYA NG   +A++LFE    + + PD    +G
Sbjct: 305 --GDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILG 362

Query: 562 VLSACSHVGLVDGGLKLFECMTEVYAIEPLVEH---YACMIDLLSRAGRLDEAFEMVKGM 618
           ++SACS +G++D      E +   Y    L+     +  +ID+ ++ G +++A +M + M
Sbjct: 363 IISACSQLGIIDAA----ESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQMFE-M 417

Query: 619 KIKPNAGIWGTLLGACRMHQNIKLGRIAV 647
               +   + T++ A   H    LGR A+
Sbjct: 418 AHPKDLLCYSTMIAALANH---GLGRDAI 443



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 85/190 (44%), Gaps = 8/190 (4%)

Query: 465 CAHLAALQLGRQIH-HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
           C  L +L   + IH  L I+S   +  FV N L+ +Y++ G    A  +F +    +   
Sbjct: 12  CKTLKSL---KSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQPNAYL 68

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMT 583
           W SLI GY  N    EA  LF +M  E ++    T   VL A + +    GG  ++  + 
Sbjct: 69  WTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYGFVL 128

Query: 584 EV-YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKL 642
           +  +A + +V++   ++DL  R  ++D A +    M  K     W  ++     +  + +
Sbjct: 129 KYGFAFDLIVQN--SVLDLFMRCRKVDTARQAFDEMCEKDIVS-WNMMISGYGNNDRVDI 185

Query: 643 GRIAVEKLSE 652
            R   +++ E
Sbjct: 186 ARKFFDRMPE 195


>gi|125602089|gb|EAZ41414.1| hypothetical protein OsJ_25936 [Oryza sativa Japonica Group]
          Length = 1165

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/606 (36%), Positives = 343/606 (56%), Gaps = 12/606 (1%)

Query: 81  NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
           N+++  Y    ++++A+ LFD+M   D+ SW  ++T Y   G+L  AR +FD +P + + 
Sbjct: 42  NALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMP-RRNA 100

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM--E 198
             WNA+++ Y +      A  L   MP+KN VS+ +++SG  K   +H A   +E M  +
Sbjct: 101 PSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEMPWQ 160

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
            RD V  N ++ GY+ + +L  A + F+ +  ++V+SW  M+ G  ++G + EARR+FD 
Sbjct: 161 WRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFDA 220

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMIDGYVRIAKLDEARR- 316
           MP RNVV+W +MI  YV+RG   +   LF+ M  E   V+ TT+       A    AR  
Sbjct: 221 MPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASLAREG 280

Query: 317 -----LLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC 370
                L+  M ++ +I    ++I  Y +   M +A + FD +   D+V WN +I GY Q 
Sbjct: 281 IQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDIVSWNSLITGYVQH 340

Query: 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
             ++EA  LF+ M  KD V+W +M+ G+A    M ++V++FE+M   ++ V+W A+IS F
Sbjct: 341 DMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQM-PVKDEVAWTAIISSF 399

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
           + N  +L A++ F  M+QEG K +    +C LSA A LA L  GRQ H  +I  G+V D 
Sbjct: 400 ITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQAHAYSINMGWVFDS 459

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME 550
            V  SL++MYAKCGR+  A  +F       +I+ NS+I  +  +G   +A+KLF +M   
Sbjct: 460 AVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFVQHGFVEDALKLFTKMQNA 519

Query: 551 GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDE 610
           G  P+ VTF+G+L+ C+  G V  G   FE M  VY +EP  EHY CM+DLL RAG L E
Sbjct: 520 GYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGRAGLLAE 579

Query: 611 AFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAE 670
           A EM+  M    ++  W  LL A  +H N+   +IA +KL E +P   + Y +LS M + 
Sbjct: 580 ALEMINSMPQNDHSDAWAALLSASSLHSNLAFAKIAAQKLLEKDPYDATAYTVLSRMFSS 639

Query: 671 AGRWDE 676
           AG  DE
Sbjct: 640 AGMEDE 645



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 138/504 (27%), Positives = 255/504 (50%), Gaps = 49/504 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +T  G+ GR+ +A  +F QM  ++ +++ ++++AYA  G +  AR +F+ MP+RN  
Sbjct: 42  NALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNAP 101

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK- 137
           SWN++++ YL   + + A  LF KM   +  S+  +I+   +   L +A  +++ +P + 
Sbjct: 102 SWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEMPWQW 161

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            D    NA++AGY ++G    A ++ + M  ++++SW++M+ G  K+G +  A + F+AM
Sbjct: 162 RDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFDAM 221

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS---------------- 241
            ER+VVSW  M+ GYV+          F  +  + V    T LS                
Sbjct: 222 PERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASLAREGI 281

Query: 242 -----------------------GYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
                                   Y+R G M++A+R FD M  +++V+WN++I  YVQ  
Sbjct: 282 QIHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDIVSWNSLITGYVQHD 341

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
            +EEA  LF  M +++ VSWT+M+ G+     + E+  L +QMP K+  A TA+IS ++ 
Sbjct: 342 MVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMPVKDEVAWTAIISSFIT 401

Query: 339 NKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVT 390
           N     A + F ++       + + ++ ++   A    +++        +N     D   
Sbjct: 402 NGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQAHAYSINMGWVFDSAV 461

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
             ++++ YA+  ++ +A  +F  +    + ++ N++I+ F+Q+ F  DALK+F  M   G
Sbjct: 462 HTSLVSMYAKCGRLAEAYHVFSSISN-PSLIAINSMITAFVQHGFVEDALKLFTKMQNAG 520

Query: 451 KKADHSTLACALSACAHLAALQLG 474
            K +H T    L+ CA    +Q G
Sbjct: 521 YKPNHVTFLGILTGCARAGFVQQG 544



 Score =  132 bits (332), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 110/462 (23%), Positives = 192/462 (41%), Gaps = 92/462 (19%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + +  +  L K G V EA ++F  M ++N V++ SMI  Y K G   D   LF  M +
Sbjct: 195 VISWSAMVDGLCKHGSVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRR 254

Query: 75  RNL--------VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEK 126
             +        V+ ++  A  L  + ++    +    F  D+F    +I  Y+R G +  
Sbjct: 255 EGVQVNTTTLSVALDACAAASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGWMVD 314

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           A+  FD +  K D   WN+++ GY +     EA  L   M  K+ VSW SM+ G+   G 
Sbjct: 315 AKRAFDCMQQK-DIVSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGW 373

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV------------- 233
           M  + + FE M  +D V+W  ++  ++   D  SA ++F ++ ++               
Sbjct: 374 MRESVELFEQMPVKDEVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSA 433

Query: 234 -------------------VSWV-------TMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
                              + WV       +++S YA+ GR+ EA  +F  +   +++A 
Sbjct: 434 LASLAMLNQGRQAHAYSINMGWVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAI 493

Query: 268 NAMIAAYVQRGQIEEAARLFIEMP------------------------------------ 291
           N+MI A+VQ G +E+A +LF +M                                     
Sbjct: 494 NSMITAFVQHGFVEDALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRP 553

Query: 292 ----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA-AQTAMISGYVQNKRMDEAN 346
               E NP  +T M+D   R   L EA  +++ MP  + + A  A++S    +  +  A 
Sbjct: 554 VYGVEPNPEHYTCMVDLLGRAGLLAEALEMINSMPQNDHSDAWAALLSASSLHSNLAFAK 613

Query: 347 QIFDKI---GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
               K+     +D   + V+ + ++  G  DE +    Q+ N
Sbjct: 614 IAAQKLLEKDPYDATAYTVLSRMFSSAGMEDEEMLKVVQLSN 655


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 259/774 (33%), Positives = 405/774 (52%), Gaps = 73/774 (9%)

Query: 29   GRVEEAIKIFSQMSQ----KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMI 84
            G  EEA+K+F  M +     + V + ++I+A    GR++DA  LF QMP  N+V+WN MI
Sbjct: 262  GLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRLDDACDLFVQMPNTNVVAWNVMI 321

Query: 85   AGYLHNDKVKEARELFDKMFRPDLFSW-ALMITCYTRKGELEKARELFDLLPNKE----- 138
            +G++      EA + F  M++  + S  + + +  +    LE     + LL + +     
Sbjct: 322  SGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALN--YGLLVHAQAIKQG 379

Query: 139  ---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
               +    ++++  YAK      AKK+ DA+  +N+V WN+ML GY +NG      K F 
Sbjct: 380  LNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFS 439

Query: 196  AMEE----RDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNG 247
             M       D  ++  +L     L+ L+   +    I     E N+    T++  YA+ G
Sbjct: 440  EMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCG 499

Query: 248  RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMID 303
             + EAR+ F+ +  R+ V+WNA+I  YVQ    +EA  +F  M       + VS  +++ 
Sbjct: 500  ALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILS 559

Query: 304  GYVRIAKLDEARR----LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
            G   +  L++  +    L+       + A +++I  YV+   ++ A  +F  + +  VV 
Sbjct: 560  GCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVS 619

Query: 360  WNVMIKGYAQCGRMDEAINLFRQMVNKDI----VTWNTMIAG------------------ 397
             N +I GYAQ   + EAI+LF++M N+ +    +T+ +++                    
Sbjct: 620  MNAIIAGYAQ-NDLVEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQ 678

Query: 398  ------------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDA 439
                              Y   ++  DA  +F E    ++T+ W A+ISG  QN    +A
Sbjct: 679  KRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEA 738

Query: 440  LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
            L+++  M +   + D +T A  L AC+ LA+L  GR IH L    G  +D   G++++ M
Sbjct: 739  LQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIFHVGLDSDELTGSAVVDM 798

Query: 500  YAKCGRIQNAELLFKD-ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
            YAKCG ++++  +F++     DVISWNS+I G+A NG A  A+K+F+EM    + PD VT
Sbjct: 799  YAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVT 858

Query: 559  FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
            F+GVL+ACSH G V  G ++F+ M   Y I P ++H ACMIDLL R G L EA E +  +
Sbjct: 859  FLGVLTACSHAGRVSEGREIFDIMVHSYKIVPRLDHCACMIDLLGRWGFLKEAEEFIDKL 918

Query: 619  KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVE 678
              +PNA IW TLLGACR+H +   GR A EKL ELEP+ +S Y LLSN++A +G WDEV 
Sbjct: 919  NFEPNAMIWATLLGACRIHGDDIRGRRAAEKLIELEPENSSPYVLLSNIYAASGNWDEVN 978

Query: 679  KVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
             VR +M   G +K PGCSWI V  + + F++GD       EI   LK L A ++
Sbjct: 979  SVRRAMREKGLRKLPGCSWIVVGQKTNLFVAGDKFHPSAGEIHALLKDLIALMK 1032



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 165/556 (29%), Positives = 274/556 (49%), Gaps = 59/556 (10%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV- 202
           +A+V  YAK GN   A K  + +  ++I++WNS+LS Y++ G +      F +++   V 
Sbjct: 120 SAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVS 179

Query: 203 ---VSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRL 255
               ++ ++L     L D+D   +    +     E N     +++  Y++ G +++AR++
Sbjct: 180 PNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKI 239

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE----RNPVSWTTMIDGYVRIAKL 311
           FD +   + V+W AMIA YVQ G  EEA ++F +M +     + V++ T+I   V + +L
Sbjct: 240 FDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRL 299

Query: 312 DEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
           D+A  L  QMP  N+ A   MISG+V+     EA   F  +    V      +       
Sbjct: 300 DDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAI 359

Query: 372 RMDEAINL--------FRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
              EA+N          +Q +N ++   +++I  YA+  +M+ A K+F+ + + RN V W
Sbjct: 360 ASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDE-RNLVLW 418

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
           NA++ G+ QN +    +K+F  M   G   D  T    LSACA L  L++GRQ+H   IK
Sbjct: 419 NAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIK 478

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
             +  +LFV N+L+ MYAKCG ++ A   F+     D +SWN++I GY    +  EA  +
Sbjct: 479 HNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNM 538

Query: 544 FEEMVMEGVAPDPVTFIGVLSACS-----------HVGLVDGGLK--------LFECMTE 584
           F  M+++G+APD V+   +LS C+           H  LV  GL+        L +   +
Sbjct: 539 FRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVK 598

Query: 585 VYAIEPLVEHYACMIDLLSRA-------------GRLDEAFEMVKGMK---IKPNAGIWG 628
             AIE     ++CM    SR+               L EA ++ + M+   + P+   + 
Sbjct: 599 CGAIEAARYVFSCMP---SRSVVSMNAIIAGYAQNDLVEAIDLFQEMQNEGLNPSEITFA 655

Query: 629 TLLGACRMHQNIKLGR 644
           +LL AC     + LGR
Sbjct: 656 SLLDACTGPYKLNLGR 671



 Score =  229 bits (584), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 160/576 (27%), Positives = 277/576 (48%), Gaps = 91/576 (15%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           ++++  YAK G V  A K F Q+ +R++++WNS+++ Y     +++    F  +      
Sbjct: 120 SAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVS 179

Query: 106 PDLFSWALMITCYTRKGELEKAREL---FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKL 162
           P+ F++A++++   R  +++  +++      +  + ++ C  +++  Y+K G+  +A+K+
Sbjct: 180 PNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKI 239

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE----RDVVSWNLMLDGYVELDDL 218
            DA+   + VSW +M++GY + G    A K FE M++     D V++  ++   V L  L
Sbjct: 240 FDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRL 299

Query: 219 DSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM------------------- 259
           D A   F ++P  NVV+W  M+SG+ + G  +EA   F  M                   
Sbjct: 300 DDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAI 359

Query: 260 ---------------PIR-----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWT 299
                           I+     NV   +++I  Y +  ++E A ++F  + ERN V W 
Sbjct: 360 ASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWN 419

Query: 300 TMIDGYVRIAKLDEARRLLDQMP----YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
            M+ GY +     +  +L  +M     + +    T+++S     + ++   Q+   I  H
Sbjct: 420 AMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKH 479

Query: 356 ----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIF 411
               ++   N ++  YA+CG ++EA   F  + N+D V+WN +I GY Q    D+A  +F
Sbjct: 480 NFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMF 539

Query: 412 EEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAAL 471
                RR                           M  +G   D  +LA  LS CA+L AL
Sbjct: 540 -----RR---------------------------MILDGIAPDEVSLASILSGCANLQAL 567

Query: 472 QLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGY 531
           + G Q+H   +KSG    L+ G+SLI MY KCG I+ A  +F       V+S N++IAGY
Sbjct: 568 EQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGY 627

Query: 532 AINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
           A N +  EAI LF+EM  EG+ P  +TF  +L AC+
Sbjct: 628 AQN-DLVEAIDLFQEMQNEGLNPSEITFASLLDACT 662



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 115/504 (22%), Positives = 219/504 (43%), Gaps = 105/504 (20%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V+  +  I    K  ++E A K+F  + ++N V +N+M+  YA+NG  +   KLF +M
Sbjct: 382 SNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEM 441

Query: 73  PQRNL----VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGEL 124
                     ++ S+++     + ++  R+L   +    F  +LF    ++  Y + G L
Sbjct: 442 RGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGAL 501

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSG 180
           E+AR+ F+ + N+ D   WNA++ GY +  + +EA  +   M    I    VS  S+LSG
Sbjct: 502 EEARQQFEFIRNR-DNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSG 560

Query: 181 -----------------------------------YTKNGEMHLASKFFEAMEERDVVSW 205
                                              Y K G +  A   F  M  R VVS 
Sbjct: 561 CANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSM 620

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSG------------------- 242
           N ++ GY + +DL  A   FQ++  + +    +++ ++L                     
Sbjct: 621 NAIIAGYAQ-NDLVEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQK 679

Query: 243 -----------------YARNGRMLEARRLFD--QMPIRNVVAWNAMIAAYVQRGQIEEA 283
                            Y  + R  +A  LF   Q P ++ + W A+I+ + Q G  EEA
Sbjct: 680 RGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYP-KSTILWTAIISGHTQNGCSEEA 738

Query: 284 ARLFIEMPERNP----VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISG 335
            +L+ EM   N      ++ +++     +A L + R +   + +  + +     +A++  
Sbjct: 739 LQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIFHVGLDSDELTGSAVVDM 798

Query: 336 YVQNKRMDEANQIFDKIGT-HDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVT 390
           Y +   M  + Q+F+++G+ +DV+ WN MI G+A+ G  + A+ +F +M    +  D VT
Sbjct: 799 YAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVT 858

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEM 414
           +  ++   +   ++ +  +IF+ M
Sbjct: 859 FLGVLTACSHAGRVSEGREIFDIM 882



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 151/325 (46%), Gaps = 43/325 (13%)

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
           + ++  YA+CG ++ A   F Q+  +DI+ WN++++ Y++   ++  +  F         
Sbjct: 120 SAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCF--------- 170

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
                   G LQN                G   +  T A  LS+CA L  + LG+Q+H  
Sbjct: 171 --------GSLQNC---------------GVSPNQFTYAIVLSSCARLVDIDLGKQVHCG 207

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEA 540
            IK G+  + F   SLI MY+KCG + +A  +F      D +SW ++IAGY   G   EA
Sbjct: 208 VIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEA 267

Query: 541 IKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMID 600
           +K+FE+M   G+ PD V F+ V++AC  +G +D    LF  M     +      +  MI 
Sbjct: 268 LKVFEDMQKLGLVPDQVAFVTVITACVGLGRLDDACDLFVQMPNTNVVA-----WNVMIS 322

Query: 601 LLSRAGRLDEAFEMVKGM---KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK 657
              + G   EA +  K M    +K      G++L A    + +  G + V   +  +   
Sbjct: 323 GHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYG-LLVHAQAIKQGLN 381

Query: 658 TSCY--ALLSNMHAEAGRWDEVEKV 680
           ++ Y  + L NM+A+  + +  +KV
Sbjct: 382 SNVYVGSSLINMYAKCEKMEAAKKV 406



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 84/164 (51%), Gaps = 2/164 (1%)

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
           A +  + IH   +K G+ +   +G++++ +YAKCG ++ A   F   +  D+++WNS+++
Sbjct: 96  ASRTSKTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLS 155

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE 589
            Y+  G+  + I  F  +   GV+P+  T+  VLS+C+ +  +D G K   C       E
Sbjct: 156 MYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLG-KQVHCGVIKMGFE 214

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
                   +ID+ S+ G L +A ++   + + P+   W  ++  
Sbjct: 215 FNSFCEGSLIDMYSKCGSLVDARKIFDAV-VDPDTVSWTAMIAG 257


>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 640

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/592 (35%), Positives = 332/592 (56%), Gaps = 9/592 (1%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N ++  Y+K G  + A KL D  P  N   W +++ G+T+N +   A  FF  M   ++V
Sbjct: 40  NKLLRLYSKFGAVSYAHKLFDETPEPNSFLWTALIHGFTENNQYENAFAFFIKMHRENIV 99

Query: 204 SWNLMLDGYVE-------LDDLDSAWKFFQKIP-EQNVVSWVTMLSGYARNGRMLEARRL 255
             N  +   ++       + D D  +    +   E ++V    M+  + R G M  AR++
Sbjct: 100 PLNFTIASVLKAVSRLGRIKDGDLVYGLAVRCGYEFDLVVKNVMIELFMRCGEMGSARQM 159

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR 315
           FD+M  R+ V+WN+MI  Y   G+++ A +LF  M ERN +SWT+MI GYV+   L EAR
Sbjct: 160 FDEMEERDAVSWNSMITGYGNNGRVDIARKLFDRMEERNVISWTSMIQGYVKAGDLLEAR 219

Query: 316 RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
            L ++MP K++A+   M+S Y+    +  A  +F+ +  HDV  WN+MI G  + G MD 
Sbjct: 220 VLFERMPEKDLASWKVMVSAYMSVGNLVAARNLFELMPIHDVGTWNLMISGCCKAGEMDA 279

Query: 376 AINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEF 435
           A   F +M  +++ +W  +I GY ++  +D A  +F++M   +N V+W+ +I G+ +   
Sbjct: 280 AKEFFDRMQERNVASWVMIIDGYIKVGDVDAARSVFDQM-PEKNLVAWSTMIGGYAKTGH 338

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS 495
              +LK++    ++G K D +     +SAC+ L        +    +      +L V  S
Sbjct: 339 PYSSLKLYKTFKEQGIKPDETFALGIISACSQLGVPDTAESVICDFVGPSLFPNLQVVTS 398

Query: 496 LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555
           LI MYAKCG I+ A  +F+  D  D+  ++++I  +A +G + +AI LF EM    + PD
Sbjct: 399 LIDMYAKCGNIERAVQVFEMVDQKDLHCYSTVITAFANHGLSEDAISLFSEMQKANIKPD 458

Query: 556 PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV 615
            V F+GVL+AC+H GLV  G +LF  M + Y I+P  +HYACM+D+L RAG L+EA  ++
Sbjct: 459 GVAFLGVLTACNHGGLVGEGRRLFRQMIDEYGIQPSEKHYACMVDILGRAGCLEEAHSLI 518

Query: 616 KGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWD 675
             M + PNA +WG LL ACR+H N++L   A  +L ++EP  +  Y LL N++A+AG+WD
Sbjct: 519 CSMPVAPNATVWGALLSACRVHLNVQLAEAAATELFQIEPNNSGNYVLLFNIYADAGQWD 578

Query: 676 EVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
           +  KVR  +  +  +K  G SWIE+ + IH F+ GD     +  I   L+ L
Sbjct: 579 DFSKVRAMIRENRVRKNRGSSWIELGSVIHEFVMGDKSHFDSERIFFMLELL 630



 Score =  249 bits (637), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 179/602 (29%), Positives = 300/602 (49%), Gaps = 64/602 (10%)

Query: 47  VTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP 106
           +T N ++  Y+K G V+ A KLF++ P+ N   W ++I G+  N++ + A   F KM R 
Sbjct: 37  LTLNKLLRLYSKFGAVSYAHKLFDETPEPNSFLWTALIHGFTENNQYENAFAFFIKMHRE 96

Query: 107 DL----FSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEA 159
           ++    F+ A ++   +R G ++    ++ L      + D    N M+  + + G    A
Sbjct: 97  NIVPLNFTIASVLKAVSRLGRIKDGDLVYGLAVRCGYEFDLVVKNVMIELFMRCGEMGSA 156

Query: 160 KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLD 219
           +++ D M  ++ VSWNSM++GY  NG + +A K F+ MEER+V+SW  M+ GYV+  DL 
Sbjct: 157 RQMFDEMEERDAVSWNSMITGYGNNGRVDIARKLFDRMEERNVISWTSMIQGYVKAGDLL 216

Query: 220 SAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ 279
            A   F+++PE+++ SW  M+S Y   G ++ AR LF+ MPI +V  WN MI+   + G+
Sbjct: 217 EARVLFERMPEKDLASWKVMVSAYMSVGNLVAARNLFELMPIHDVGTWNLMISGCCKAGE 276

Query: 280 IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQN 339
           ++ A   F  M ERN  SW  +IDGY+++  +D AR + DQMP KN+ A + MI GY + 
Sbjct: 277 MDAAKEFFDRMQERNVASWVMIIDGYIKVGDVDAARSVFDQMPEKNLVAWSTMIGGYAKT 336

Query: 340 KRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMV------NKDIV 389
                + +++          D      +I   +Q G  D A ++    V      N  +V
Sbjct: 337 GHPYSSLKLYKTFKEQGIKPDETFALGIISACSQLGVPDTAESVICDFVGPSLFPNLQVV 396

Query: 390 TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
           T  ++I  YA+   ++ AV++F EM  +++   ++ +I+ F  +    DA+ +F  M + 
Sbjct: 397 T--SLIDMYAKCGNIERAVQVF-EMVDQKDLHCYSTVITAFANHGLSEDAISLFSEMQKA 453

Query: 450 GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA 509
             K D       L+AC H   +  GR++                  +I  Y     IQ +
Sbjct: 454 NIKPDGVAFLGVLTACNHGGLVGEGRRLFR---------------QMIDEYG----IQPS 494

Query: 510 ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
           E  +  A  VD++       G A  G   EA  L   M    VAP+   +  +LSAC   
Sbjct: 495 EKHY--ACMVDIL-------GRA--GCLEEAHSLICSM---PVAPNATVWGALLSACR-- 538

Query: 570 GLVDGGLKLFE-CMTEVYAIEPLVE-HYACMIDLLSRAGRLDEAFEMVKGM----KIKPN 623
             V   ++L E   TE++ IEP    +Y  + ++ + AG+ D+ F  V+ M    +++ N
Sbjct: 539 --VHLNVQLAEAAATELFQIEPNNSGNYVLLFNIYADAGQWDD-FSKVRAMIRENRVRKN 595

Query: 624 AG 625
            G
Sbjct: 596 RG 597



 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 177/347 (51%), Gaps = 44/347 (12%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           +N  I    + G +  A ++F +M +++ V++NSMI+ Y  NGRV+ ARKLF++M +RN+
Sbjct: 140 KNVMIELFMRCGEMGSARQMFDEMEERDAVSWNSMITGYGNNGRVDIARKLFDRMEERNV 199

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
           +SW SMI GY+    + EAR LF++M   DL SW +M++ Y   G L  AR LF+L+P  
Sbjct: 200 ISWTSMIQGYVKAGDLLEARVLFERMPEKDLASWKVMVSAYMSVGNLVAARNLFELMP-I 258

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            D   WN M++G  K G  + AK+  D M  +N+ SW  ++ GY K G++  A   F+ M
Sbjct: 259 HDVGTWNLMISGCCKAGEMDAAKEFFDRMQERNVASWVMIIDGYIKVGDVDAARSVFDQM 318

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ-------------------------- 231
            E+++V+W+ M+ GY +     S+ K ++   EQ                          
Sbjct: 319 PEKNLVAWSTMIGGYAKTGHPYSSLKLYKTFKEQGIKPDETFALGIISACSQLGVPDTAE 378

Query: 232 -------------NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
                        N+    +++  YA+ G +  A ++F+ +  +++  ++ +I A+   G
Sbjct: 379 SVICDFVGPSLFPNLQVVTSLIDMYAKCGNIERAVQVFEMVDQKDLHCYSTVITAFANHG 438

Query: 279 QIEEAARLFIEMPERN----PVSWTTMIDGYVRIAKLDEARRLLDQM 321
             E+A  LF EM + N     V++  ++        + E RRL  QM
Sbjct: 439 LSEDAISLFSEMQKANIKPDGVAFLGVLTACNHGGLVGEGRRLFRQM 485



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 88/201 (43%), Gaps = 8/201 (3%)

Query: 454 DHSTLACALSACAHLAALQLGRQIH-HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512
           +HS ++  L  C  L  L     IH HL I     +     N L+ +Y+K G +  A  L
Sbjct: 2   NHSLISKLLKQCRSLKTLT---TIHAHLLISGSIASSDLTLNKLLRLYSKFGAVSYAHKL 58

Query: 513 FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
           F +    +   W +LI G+  N     A   F +M  E + P   T   VL A S +G +
Sbjct: 59  FDETPEPNSFLWTALIHGFTENNQYENAFAFFIKMHRENIVPLNFTIASVLKAVSRLGRI 118

Query: 573 -DGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
            DG L     +   Y  + +V++   MI+L  R G +  A +M   M+ + +A  W +++
Sbjct: 119 KDGDLVYGLAVRCGYEFDLVVKN--VMIELFMRCGEMGSARQMFDEME-ERDAVSWNSMI 175

Query: 632 GACRMHQNIKLGRIAVEKLSE 652
                +  + + R   +++ E
Sbjct: 176 TGYGNNGRVDIARKLFDRMEE 196


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 235/766 (30%), Positives = 407/766 (53%), Gaps = 63/766 (8%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHN 90
           ++ A K+F +M  ++ V+YNS+IS YA  G ++ ARK F +MP+R++VSWNS+I+G+L N
Sbjct: 100 LDYACKVFDKMYLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQN 159

Query: 91  DKVKEARELFDKMFRPDL-FSWALMITCYTRKGELE------KARELFDLLPNKEDTACW 143
            + +++ ++F +M R  + F  A +       G LE      +   L        D    
Sbjct: 160 GECRKSIDVFLEMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTG 219

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV- 202
           +A++  YAK    +++  +   +P KN VSW++M++G  +N       + F+ M+   V 
Sbjct: 220 SALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVG 279

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQ--------NVVSWVTMLSGYARNGRMLEARR 254
           VS ++    +     L SA +  +++           +++     L  YA+ GRM +A++
Sbjct: 280 VSQSIYASLFRSCAAL-SALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQK 338

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAK 310
           +   MP  ++ ++NA+I  Y +  +  +A + F  + +     + ++ +  ++    I  
Sbjct: 339 VLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRG 398

Query: 311 LDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG 366
             E R++    +  +   NI    A++  Y + K + EA+ +FD +   D V WN +I  
Sbjct: 399 DLEGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAA 458

Query: 367 YAQCGRMDEAINLFRQMVNK----DIVTWNTMIAGYAQIRQMDDAVKIFEEMGK------ 416
             Q G  +E +  F  M++     D  T+ +++   A  + ++  ++I   + K      
Sbjct: 459 CEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFD 518

Query: 417 ----------------------------RRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
                                       ++  VSWNA+ISGF   +   DA K F  M +
Sbjct: 519 SFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLE 578

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
            G   D+ T A  L  CA+LA + LG+QIH   IK    +D+++ ++L+ MY+KCG +Q+
Sbjct: 579 MGVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQD 638

Query: 509 AELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
           ++L+F+ A   D ++WN+++ GYA +G   EA+KLFE M +  V P+  TF+ VL AC+H
Sbjct: 639 SQLMFEKAPNRDFVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAH 698

Query: 569 VGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWG 628
           +GLVD GL  F+ M   Y ++P  EHY+CM+D+L R+GR+DEA  +V+ M  + +A IW 
Sbjct: 699 MGLVDKGLHYFDVMLSEYGLDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWR 758

Query: 629 TLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688
            LL  C++H N+++   A   L +L+PQ +S   LLSN++A+AG W  V ++R  M  + 
Sbjct: 759 NLLSVCKIHGNVEVAEKATRALLQLDPQDSSACVLLSNIYADAGMWGNVSEMRKMMRHNK 818

Query: 689 AQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNT 734
            +K+PGCSWIE+K+++H FL GD    R  EI   L  L  ++++ 
Sbjct: 819 LKKEPGCSWIELKDEVHAFLVGDKGHPRDEEIYEKLGVLIGEMQSV 864



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 184/713 (25%), Positives = 327/713 (45%), Gaps = 92/713 (12%)

Query: 35  IKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVK 94
           I+ FS + Q+ +   NS+       G+   AR +F        VS N ++  Y+    + 
Sbjct: 49  IRTFSHIYQECS-KQNSL-----NPGKQAHARMIFCGFEPTTFVS-NCLMQMYIKCLYLD 101

Query: 95  EARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIG 154
            A ++FDKM+  D+ S+  +I+ Y   GE++ AR+ F  +P + D   WN++++G+ + G
Sbjct: 102 YACKVFDKMYLRDVVSYNSIISGYASCGEMDIARKFFYEMPER-DVVSWNSVISGFLQNG 160

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE--------------- 199
              E +K +D       +       G+ +   + +  K   A+EE               
Sbjct: 161 ---ECRKSIDV-----FLEMGRCGVGFDR-ASLAVVLKACGALEECDMGVQVHGLVVKFG 211

Query: 200 --RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFD 257
              DVV+ + +L  Y +   LD +   F ++PE+N VSW  M++G  +N R +E   LF 
Sbjct: 212 FDCDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFK 271

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER--------NPVSWTTMIDGYVRIA 309
           +M    V    ++ A+  +      A RL  E+           + +  T  +D Y +  
Sbjct: 272 EMQGVGVGVSQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCG 331

Query: 310 KLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQI----------FDKIGTHDVVC 359
           ++ +A+++L  MP  ++ +  A+I GY ++ R  +A +           FD+I     + 
Sbjct: 332 RMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALN 391

Query: 360 WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRN 419
               I+G  + GR    + + + +   +I   N ++  Y + + + +A  +F+ M +RR+
Sbjct: 392 ACASIRGDLE-GRQVHGLAV-KSISMSNICVANAILDMYGKCKALAEASDLFDMM-ERRD 448

Query: 420 TVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHH 479
            VSWNA+I+   QN    + L  F  M     + D  T    L ACA   AL  G +IH 
Sbjct: 449 AVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHT 508

Query: 480 LAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATE 539
             IKSG   D FVG +L+ MY KCG I+ A+ +    +   ++SWN++I+G+++   + +
Sbjct: 509 RIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSED 568

Query: 540 AIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF------ECMTEVYAIEPLVE 593
           A K F  M+  GV PD  T+  VL  C+++  V  G ++       E  ++VY    LV+
Sbjct: 569 AHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVD 628

Query: 594 HYA------------------------CMIDLLSRAGRLDEAFEMVKGMK---IKPNAGI 626
            Y+                         M+   +  G  +EA ++ + M+   +KPN   
Sbjct: 629 MYSKCGNMQDSQLMFEKAPNRDFVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHAT 688

Query: 627 WGTLLGACRMHQNIKLGRIAVE-KLSE--LEPQKTSCYALLSNMHAEAGRWDE 676
           + ++L AC     +  G    +  LSE  L+PQ    Y+ + ++   +GR DE
Sbjct: 689 FVSVLRACAHMGLVDKGLHYFDVMLSEYGLDPQSEH-YSCMVDILGRSGRIDE 740



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 104/475 (21%), Positives = 185/475 (38%), Gaps = 116/475 (24%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFE- 70
           GS +      +    K GR+ +A K+ S M + +  +YN++I  YA++ R   A K F+ 
Sbjct: 314 GSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQL 373

Query: 71  --------------------------------------QMPQRNLVSWNSMIAGYLHNDK 92
                                                  +   N+   N+++  Y     
Sbjct: 374 LLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKA 433

Query: 93  VKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE-------------- 138
           + EA +LFD M R D  SW  +I    + G  E+    F  + +                
Sbjct: 434 LAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKA 493

Query: 139 ------------------------DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSW 174
                                   D+    A+V  Y K G   +A K+ D    K +VSW
Sbjct: 494 CAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSW 553

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPE 230
           N+++SG++   +   A KFF  M E  V     ++  +LD    L  +    +   +I +
Sbjct: 554 NAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIK 613

Query: 231 QNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
           Q + S V    T++  Y++ G M +++ +F++ P R+ V WNAM+  Y   G  EEA +L
Sbjct: 614 QELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAMLCGYAHHGLGEEALKL 673

Query: 287 FIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRM 342
           F  M     + N  ++ +++     +  +D+     D            M+S Y  + + 
Sbjct: 674 FESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYFD-----------VMLSEYGLDPQS 722

Query: 343 DEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIA 396
           +  + + D +G               + GR+DEA+NL ++M    D V W  +++
Sbjct: 723 EHYSCMVDILG---------------RSGRIDEALNLVQKMPFEADAVIWRNLLS 762


>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 230/662 (34%), Positives = 366/662 (55%), Gaps = 19/662 (2%)

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
           YL+  K  E  ++  +    DL     MI+ Y + G L +AR LFD +P + + + W+A+
Sbjct: 66  YLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVS-WSAL 124

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV---- 202
           ++G  K G   E+    +  P +N+VSW + +SG+ +NG    A K F  + E  V    
Sbjct: 125 ISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPND 184

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT----MLSGYARNGRMLEARRLFDQ 258
           V++  ++    EL D          + +     +++    +++   R G +  ARR+FD+
Sbjct: 185 VTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDR 244

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
           M  R+VV+W A++ AYV+ G + EA R+F EMPERN +SW+ MI  Y +    +EA +L 
Sbjct: 245 MEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLF 304

Query: 319 DQMPYK----NIAAQTAMISGYVQNKRMDEANQI---FDKIGT-HDVVCWNVMIKGYAQC 370
            +M  +    NI+     +S     + +     I     KIG   DV   + +I  Y +C
Sbjct: 305 SKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKC 364

Query: 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
           G+ D+   +F  ++ K++V WN+M+ GY+ I    +  +   E+   +N VSW  +I+G+
Sbjct: 365 GKPDDGRLVFDLILEKNVVCWNSMVGGYS-INGRLEETEELFELIPEKNDVSWGTIIAGY 423

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
           L+NE     L++F  +   G+  + ST +  L ACA +A+L  G  +H   IK G   D+
Sbjct: 424 LENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDI 483

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME 550
           FVG +L  MYAKCG I +++ +F+     + ISW  +I G A +G A E++ LFEEM   
Sbjct: 484 FVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERT 543

Query: 551 G-VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLD 609
             VAP+ +  + VL ACSH GLVD GL  F  M +VY I+P  +HY C++DLLSR+GRL 
Sbjct: 544 SEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLY 603

Query: 610 EAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHA 669
           EA E ++ +  +P A  W  LL  C+ +++ K+     +KL +L    ++ Y LLSN++A
Sbjct: 604 EAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQLAENNSAGYVLLSNIYA 663

Query: 670 EAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAA 729
            AGRW +V  +R  M   G +K  GCSW+EV+NQ+H+F S D    ++ EI  TL+ L +
Sbjct: 664 SAGRWIDVSNIRKLMREKGLKKSGGCSWVEVRNQVHSFYSEDGSHSQSNEIYGTLQLLRS 723

Query: 730 QI 731
           ++
Sbjct: 724 EM 725



 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 124/471 (26%), Positives = 229/471 (48%), Gaps = 57/471 (12%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS +   N  I+   + G + +A  +F +M ++N V+++++IS   K GRV ++   FE+
Sbjct: 84  GSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFER 143

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----RP-------------DLFSWAL- 113
            P +N+VSW + I+G++ N    EA +LF ++     RP             +L  + L 
Sbjct: 144 NPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLG 203

Query: 114 ---------------------MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAK 152
                                +IT   R GE++ AR +FD +  K D   W A++  Y +
Sbjct: 204 MSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRM-EKRDVVSWTAILDAYVE 262

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLM 208
            G+  EA+++ D MP +N +SW++M++ Y+++G    A K F  M +     ++  +   
Sbjct: 263 TGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACT 322

Query: 209 LDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV 264
           L     L  L +       +     +++V    +++  Y + G+  + R +FD +  +NV
Sbjct: 323 LSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNV 382

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLD----- 319
           V WN+M+  Y   G++EE   LF  +PE+N VSW T+I GY+   + ++   + +     
Sbjct: 383 VCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVS 442

Query: 320 -QMPYKNIAAQT--AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
            Q P K+  +    A  S    +K M+   +I      +D+     +   YA+CG +  +
Sbjct: 443 GQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSS 502

Query: 377 INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
             +F +M  K+ ++W  MI G A+     +++ +FEEM +R + V+ N L+
Sbjct: 503 KQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEM-ERTSEVAPNELM 552



 Score = 44.7 bits (104), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 4/107 (3%)

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           G  +H   IK+G+ +  ++   L+ +Y  C +    + + K+ D  D++  N +I+ Y  
Sbjct: 40  GNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQ 99

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE 580
            GN  +A  LF+EM       + V++  ++S     G V+  +  FE
Sbjct: 100 WGNLVQARLLFDEMPER----NEVSWSALISGLMKYGRVEESMWYFE 142


>gi|125560040|gb|EAZ05488.1| hypothetical protein OsI_27705 [Oryza sativa Indica Group]
          Length = 1165

 Score =  397 bits (1021), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/606 (36%), Positives = 343/606 (56%), Gaps = 12/606 (1%)

Query: 81  NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
           N+++  Y    ++++A+ LFD+M   D+ SW  ++T Y   G+L  AR +FD +P + + 
Sbjct: 42  NALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMP-RRNA 100

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM--E 198
             WNA+++ Y +      A  L   MP+KN VS+ +++SG  K   +H A   +E M  +
Sbjct: 101 PSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEMPWQ 160

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
            RD V  N ++ GY+ + +L  A + F+ +  ++V+SW  M+ G  ++G + EARR+FD 
Sbjct: 161 WRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFDA 220

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMIDGYVRIAKLDEARR- 316
           MP RNVV+W +MI  YV+RG   +   LF+ M  E   V+ TT+       A    AR  
Sbjct: 221 MPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASLAREG 280

Query: 317 -----LLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC 370
                L+  M ++ +I    ++I  Y +   M +A + FD +   D+V WN +I GY Q 
Sbjct: 281 IQIHNLIISMGFELDIFLGDSIIIMYSRFGCMVDAKRAFDCMQQKDIVSWNSLITGYVQH 340

Query: 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
             ++EA  LF+ M  KD V+W +M+ G+A    M ++V++FE+M   ++ V+W A+IS F
Sbjct: 341 DMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQM-PVKDEVAWTAIISSF 399

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
           + N  +L A++ F  M+QEG K +    +C LSA A LA L  GRQ H  +I  G+V D 
Sbjct: 400 ITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQAHAYSINMGWVFDS 459

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME 550
            V  SL++MYAKCGR+  A  +F       +I+ NS+I  +  +G   +A+KLF +M   
Sbjct: 460 AVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFVQHGFVEDALKLFTKMQNA 519

Query: 551 GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDE 610
           G  P+ VTF+G+L+ C+  G V  G   FE M  VY +EP  EHY CM+DLL RAG L E
Sbjct: 520 GYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGRAGLLAE 579

Query: 611 AFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAE 670
           A EM+  M    ++  W  LL A  +H N+   +IA +KL E +P   + Y +LS M + 
Sbjct: 580 ALEMINSMPQNDHSDAWAALLSASSLHSNLAFAKIAAQKLLEKDPYDATAYTVLSRMFSS 639

Query: 671 AGRWDE 676
           AG  DE
Sbjct: 640 AGMEDE 645



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 138/504 (27%), Positives = 255/504 (50%), Gaps = 49/504 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +T  G+ GR+ +A  +F QM  ++ +++ ++++AYA  G +  AR +F+ MP+RN  
Sbjct: 42  NALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPRRNAP 101

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK- 137
           SWN++++ YL   + + A  LF KM   +  S+  +I+   +   L +A  +++ +P + 
Sbjct: 102 SWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYEEMPWQW 161

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            D    NA++AGY ++G    A ++ + M  ++++SW++M+ G  K+G +  A + F+AM
Sbjct: 162 RDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVFDAM 221

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS---------------- 241
            ER+VVSW  M+ GYV+          F  +  + V    T LS                
Sbjct: 222 PERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASLAREGI 281

Query: 242 -----------------------GYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
                                   Y+R G M++A+R FD M  +++V+WN++I  YVQ  
Sbjct: 282 QIHNLIISMGFELDIFLGDSIIIMYSRFGCMVDAKRAFDCMQQKDIVSWNSLITGYVQHD 341

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
            +EEA  LF  M +++ VSWT+M+ G+     + E+  L +QMP K+  A TA+IS ++ 
Sbjct: 342 MVEEAHVLFKLMHQKDAVSWTSMVVGFANRGWMRESVELFEQMPVKDEVAWTAIISSFIT 401

Query: 339 NKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVT 390
           N     A + F ++       + + ++ ++   A    +++        +N     D   
Sbjct: 402 NGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQGRQAHAYSINMGWVFDSAV 461

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
             ++++ YA+  ++ +A  +F  +    + ++ N++I+ F+Q+ F  DALK+F  M   G
Sbjct: 462 HTSLVSMYAKCGRLAEAYHVFSSISN-PSLIAINSMITAFVQHGFVEDALKLFTKMQNAG 520

Query: 451 KKADHSTLACALSACAHLAALQLG 474
            K +H T    L+ CA    +Q G
Sbjct: 521 YKPNHVTFLGILTGCARAGFVQQG 544



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 110/462 (23%), Positives = 192/462 (41%), Gaps = 92/462 (19%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + +  +  L K G V EA ++F  M ++N V++ SMI  Y K G   D   LF  M +
Sbjct: 195 VISWSAMVDGLCKHGSVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRR 254

Query: 75  RNL--------VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEK 126
             +        V+ ++  A  L  + ++    +    F  D+F    +I  Y+R G +  
Sbjct: 255 EGVQVNTTTLSVALDACAAASLAREGIQIHNLIISMGFELDIFLGDSIIIMYSRFGCMVD 314

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           A+  FD +  K D   WN+++ GY +     EA  L   M  K+ VSW SM+ G+   G 
Sbjct: 315 AKRAFDCMQQK-DIVSWNSLITGYVQHDMVEEAHVLFKLMHQKDAVSWTSMVVGFANRGW 373

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV------------- 233
           M  + + FE M  +D V+W  ++  ++   D  SA ++F ++ ++               
Sbjct: 374 MRESVELFEQMPVKDEVAWTAIISSFITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSA 433

Query: 234 -------------------VSWV-------TMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
                              + WV       +++S YA+ GR+ EA  +F  +   +++A 
Sbjct: 434 LASLAMLNQGRQAHAYSINMGWVFDSAVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAI 493

Query: 268 NAMIAAYVQRGQIEEAARLFIEMP------------------------------------ 291
           N+MI A+VQ G +E+A +LF +M                                     
Sbjct: 494 NSMITAFVQHGFVEDALKLFTKMQNAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRP 553

Query: 292 ----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA-AQTAMISGYVQNKRMDEAN 346
               E NP  +T M+D   R   L EA  +++ MP  + + A  A++S    +  +  A 
Sbjct: 554 VYGVEPNPEHYTCMVDLLGRAGLLAEALEMINSMPQNDHSDAWAALLSASSLHSNLAFAK 613

Query: 347 QIFDKI---GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
               K+     +D   + V+ + ++  G  DE +    Q+ N
Sbjct: 614 IAAQKLLEKDPYDATAYTVLSRMFSSAGMEDEEMLKVVQLSN 655


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 237/716 (33%), Positives = 390/716 (54%), Gaps = 38/716 (5%)

Query: 50  NSMISAYAKNGRVNDARKLFE-QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL 108
           N+++ AY   G ++DAR+L    + + N+++ N M+ GY     + +A ELFD+M R D+
Sbjct: 59  NTLLHAYLSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDV 118

Query: 109 FSWALMITCYTRK----------GELEKARELFDLLPNKE---DTACWNAMVAGYAKIGN 155
            SW  +++  +R           G  E A +L  L    +   D     A+V  + + G 
Sbjct: 119 ASWNTLMSDTSRPAGSWMSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGY 178

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
            + A +L   +    I   NSML+GY K   +  A ++FE M ERDVVSWN+M+    + 
Sbjct: 179 VDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQS 238

Query: 216 DDLDSAWKFFQKIPEQNV----VSWVTMLSGYARN-----GRMLEARRLFDQMPIRNVVA 266
             +  A     ++  + V     ++ + L+  AR      G+ L A+ +   +P  +   
Sbjct: 239 GRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAK-VIRSLPQIDPYV 297

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
            +A+I  Y + G  +EA R+F  + +RN VSWT +I G ++     ++  L +QM  + +
Sbjct: 298 ASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELM 357

Query: 327 A----AQTAMISGYVQNKRMD-----EANQIFDKIG-THDVVCWNVMIKGYAQCGRMDEA 376
           A    A   +ISG     RMD     + + +  K G    +V  N +I  YA+CG +  A
Sbjct: 358 AIDQFALATLISGCFN--RMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNA 415

Query: 377 INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
             +F  M  +DIV+W +MI  Y+QI  +  A + F+ M  R N ++WNA++  ++Q+   
Sbjct: 416 EFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATR-NAITWNAMLGAYIQHGAE 474

Query: 437 LDALKIF-VLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS 495
            D LK++  +++Q+    D  T       CA + A +LG QI    +K+G + ++ V N+
Sbjct: 475 EDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANA 534

Query: 496 LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555
            ITMY+KCGRI  A+ LF   +  DV+SWN++I GY+ +G   +A K F++M+ +G  PD
Sbjct: 535 AITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPD 594

Query: 556 PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV 615
            ++++ VLS CSH GLV  G   F+ MT V+ I P +EH++CM+DLL RAG L EA +++
Sbjct: 595 YISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLI 654

Query: 616 KGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWD 675
             M +KP A +WG LL AC++H N +L  +A + + EL+   +  Y LL+ ++++AG+ D
Sbjct: 655 DKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSD 714

Query: 676 EVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           +  +VR  M   G +K PG SW+EV+N++H F + D    +   I N +  L  +I
Sbjct: 715 DSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELMEKI 770



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/461 (27%), Positives = 224/461 (48%), Gaps = 72/461 (15%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           + G V+ A ++FSQ+ +      NSM++ YAK   ++ A + FE M +R++VSWN MIA 
Sbjct: 175 RCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAA 234

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE-------- 138
              + +V+EA  L  +M R  +    L  T YT    L     LF L   K+        
Sbjct: 235 LSQSGRVREALGLVVEMHRKGV---RLDSTTYT--SSLTACARLFSLGWGKQLHAKVIRS 289

Query: 139 ----DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG------YTKNGEMH 188
               D    +A++  YAK G++ EAK++ +++  +N VSW  ++ G      ++K+ E+ 
Sbjct: 290 LPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELF 349

Query: 189 -----------------LASKFFEAME----------------ERDVVSWNLMLDGYVEL 215
                            L S  F  M+                 R +V  N ++  Y + 
Sbjct: 350 NQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKC 409

Query: 216 DDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
            DL +A   F  + E+++VSW +M++ Y++ G +++AR  FD M  RN + WNAM+ AY+
Sbjct: 410 GDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYI 469

Query: 276 QRGQIEEAARLFIEMPERNPVS--WTTMIDGYVRIAKLDEARRLLDQMPYK--------N 325
           Q G  E+  +++  M  +  V+  W T +  +   A +  A +L DQ+           N
Sbjct: 470 QHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIG-ANKLGDQIIGHTVKAGLILN 528

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
           ++   A I+ Y +  R+ EA ++FD +   DVV WN MI GY+Q G   +A   F  M++
Sbjct: 529 VSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLS 588

Query: 386 K----DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
           K    D +++  +++G +    + +  K++ +M  R + +S
Sbjct: 589 KGAKPDYISYVAVLSGCSHSGLVQEG-KLYFDMMTRVHGIS 628



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 174/361 (48%), Gaps = 31/361 (8%)

Query: 5   LKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND 64
           LKS  N+   V   N  I+   K G ++ A  +FS MS+++ V++ SMI+AY++ G +  
Sbjct: 388 LKSGHNRAIVV--SNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIK 445

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYT 119
           AR+ F+ M  RN ++WN+M+  Y+ +   ++  +++  M       PD   W   +T + 
Sbjct: 446 AREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPD---WVTYVTLFR 502

Query: 120 RKGELEKARELFDLLPNKE-------DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV 172
              ++  A +L D +           + +  NA +  Y+K G  +EA+KL D +  K++V
Sbjct: 503 GCADI-GANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVV 561

Query: 173 SWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKI 228
           SWN+M++GY+++G    A+K F+ M  +    D +S+  +L G      +     +F  +
Sbjct: 562 SWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMM 621

Query: 229 PEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPIRNVV-AWNAMIAAYVQRGQ--- 279
              + +S     +  M+    R G + EA+ L D+MP++     W A+++A    G    
Sbjct: 622 TRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDEL 681

Query: 280 IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQN 339
            E AA+   E+   +  S+  +   Y    K D++ ++   M  K I          V+N
Sbjct: 682 AELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVEN 741

Query: 340 K 340
           K
Sbjct: 742 K 742



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 78/362 (21%), Positives = 139/362 (38%), Gaps = 95/362 (26%)

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK-DA 516
           LA AL +C    AL   R +H   +  G  + +F+ N+L+  Y  CG + +A  L + D 
Sbjct: 23  LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADI 82

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP---------------------- 554
              +VI+ N ++ GYA  G+ ++A +LF+ M    VA                       
Sbjct: 83  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALG 142

Query: 555 -------------------DPVTFIGVLSACSHVGLVDGGLKLFECM------------- 582
                              DP     ++      G VD   +LF  +             
Sbjct: 143 CRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLA 202

Query: 583 --TEVYAIEPLVEHYA-----------CMIDLLSRAGRLDEAFEMVKGMK---IKPNAGI 626
              ++Y I+  +E++             MI  LS++GR+ EA  +V  M    ++ ++  
Sbjct: 203 GYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTT 262

Query: 627 WGTLLGACRMHQNIKLGR----IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRV 682
           + + L AC    ++  G+      +  L +++P   S    L  ++A+ G + E ++V  
Sbjct: 263 YTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASA---LIELYAKCGSFKEAKRVFN 319

Query: 683 SMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQ----CRTAEICNTLKTLAAQIRNTPLAV 738
           S+     Q +   SW        T L G   Q     ++ E+ N ++     I    LA 
Sbjct: 320 SL-----QDRNSVSW--------TVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALAT 366

Query: 739 II 740
           +I
Sbjct: 367 LI 368


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 238/727 (32%), Positives = 392/727 (53%), Gaps = 69/727 (9%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           N +I  YAKNG V  AR++F+++  R+ VSW +M++GY      KEA  L+ +M      
Sbjct: 82  NLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVI 141

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKL 162
           P  +  + +++  T+     + R +   +  +    +T   NA++A Y   G++  A+++
Sbjct: 142 PTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERV 201

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME------------------------ 198
              M   + V++N+++SG+ + G    A + F+ M+                        
Sbjct: 202 FCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDL 261

Query: 199 ---------------ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGY 243
                            D ++   +LD YV+  D+++A   F      NVV W  ML  Y
Sbjct: 262 QKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAY 321

Query: 244 ARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIE---EAARLFIEMP-ERNP 295
            +   + ++  +F QM       N   +  ++      GQIE   +   L I+   E + 
Sbjct: 322 GQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDM 381

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
                +ID Y +   LD+AR++L+ +  +++ + T+MI+GYVQ+   +EA   F ++   
Sbjct: 382 YVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEM--Q 439

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMVN-----------KDIVTWNTMIAGYAQIRQM 404
           D   W   I G A        I   RQ +             DI  WNT++  YA+  + 
Sbjct: 440 DCGVWPDNI-GLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRS 498

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSA 464
           ++A  +F E+   ++ ++WN LISGF Q+  +  AL +F+ M+Q G K +  T   A+SA
Sbjct: 499 EEAFSLFREI-DHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISA 557

Query: 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
            A+LA ++ G+Q+H  A+K+G+ ++  V N+LI++Y KCG I++A+++F +    + +SW
Sbjct: 558 LANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSW 617

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           N++I   + +G   EA+ LF++M  EG+ P+ VTFIGVL+ACSHVGLV+ GL  F+ M+ 
Sbjct: 618 NTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSN 677

Query: 585 VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
           VY + P+ +HYAC++D+L RAG+LD A   V  M I  NA IW TLL AC++H+NI++G 
Sbjct: 678 VYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGE 737

Query: 645 IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQI 704
           +A + L ELEP  ++ Y LLSN +A  G+W   ++VR  M+  G +K+PG SWIEVKN +
Sbjct: 738 LAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAV 797

Query: 705 HTFLSGD 711
           H F  GD
Sbjct: 798 HAFFVGD 804



 Score =  108 bits (271), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 138/279 (49%), Gaps = 36/279 (12%)

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMG 415
           D +  N++I  YA+ G + +A  +F+++ ++D V+W  M++GYAQ     +A +++ +M 
Sbjct: 77  DRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQM- 135

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
                  W A+I                              L+  LSAC        GR
Sbjct: 136 ------HWTAVI-------------------------PTPYVLSSVLSACTKGKLFAQGR 164

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
            IH    K  + ++ FVGN+LI +Y   G  + AE +F D    D +++N+LI+G+A  G
Sbjct: 165 MIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCG 224

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV-YAIEPLVEH 594
           +   A+++F+EM + G+ PD VT   +L+AC+ VG +  G +L   + +   + + + E 
Sbjct: 225 HGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITE- 283

Query: 595 YACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
              ++DL  + G ++ A ++   +  + N  +W  +L A
Sbjct: 284 -GSLLDLYVKCGDIETAHDIFN-LGDRTNVVLWNLMLVA 320



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 58/111 (52%), Gaps = 1/111 (0%)

Query: 458 LACALSACAHLA-ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
           L CAL AC        L  +IH  ++  G   D  +GN LI +YAK G +  A  +FK+ 
Sbjct: 45  LTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKEL 104

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
              D +SW ++++GYA  G   EA +L+ +M    V P P     VLSAC+
Sbjct: 105 SSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACT 155


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 253/760 (33%), Positives = 416/760 (54%), Gaps = 46/760 (6%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G Y    N  I    K+G V  A ++F ++S ++ V++ +M+S YA+NG   +A  L+ Q
Sbjct: 74  GKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQ 133

Query: 72  MPQRNLVS----WNSMIAGYLHNDKVKEAREL----FDKMFRPDLFSWALMITCYTRKGE 123
           M +  +V      +S+++     +   + R +    +   F  ++F    +IT Y R G 
Sbjct: 134 MHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGS 193

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP----SKNIVSWNSMLS 179
              A  +F  +P++ DT  +N +++G+A+ G+   A ++ + M     S + V+ +S+L+
Sbjct: 194 FRLAERVFCDMPHR-DTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLA 252

Query: 180 GYTKNGEMH----LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
                G++     L S  F+A    D +    +LD YV+  D+++A   F      NVV 
Sbjct: 253 ACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVL 312

Query: 236 WVTMLSGYARNGRMLEARRLFDQMP---IR-NVVAWNAMIAAYVQRGQI---EEAARLFI 288
           W  ML  + +   + ++  LF QM    IR N   +  ++       +I   E+   L +
Sbjct: 313 WNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSV 372

Query: 289 EMP-ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347
           +   E +      +ID Y +   L++ARR+L+ +  K++ + T+MI+GYVQ++   +A  
Sbjct: 373 KTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALA 432

Query: 348 IF---DKIGT-HDVVCWNVMIKGYAQCGRMDEAINLFRQMV----NKDIVTWNTMIAGYA 399
            F    K G   D +     I G A    M + + +  ++     + D+  WN ++  YA
Sbjct: 433 AFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYA 492

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
           +  ++ +A   FEEM + ++ ++ N L+SGF Q+  H +ALK+F+ M Q G K +  T  
Sbjct: 493 RCGRIREAFSSFEEM-ELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFV 551

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
            ALSA A+LA ++ G+QIH   IK+G+  +  VGN+LI++Y KCG  ++A++ F +    
Sbjct: 552 SALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSER 611

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
           + +SWN++I   + +G   EA+ LF++M  EG+ P+ VTFIGVL+ACSHVGLV+ GL  F
Sbjct: 612 NEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYF 671

Query: 580 ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
           + M++ Y I P  +HYAC+ID+  RAG+LD A + ++ M I  +A +W TLL AC++H+N
Sbjct: 672 KSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKN 731

Query: 640 IKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
           I++G  A + L ELEP  ++ Y LLSN +A   +W   ++VR  M   G +K+PG SWIE
Sbjct: 732 IEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIE 791

Query: 700 VKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNTPLAVI 739
           VKN +H F  GD            L  LA QI N  LAVI
Sbjct: 792 VKNVVHAFFVGD-----------RLHPLAEQIYNF-LAVI 819



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 78/160 (48%), Gaps = 1/160 (0%)

Query: 417 RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC-AHLAALQLGR 475
           RR   S    ++GFL +E     L +F    ++         ACAL AC  +    Q+  
Sbjct: 3   RRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQVVP 62

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
           +IH  A+  G      VGN LI +Y+K G +  A  +F++    D +SW ++++GYA NG
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
              EA+ L+ +M   GV P P     VLS+C+   L   G
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQG 162


>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
          Length = 1984

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 234/703 (33%), Positives = 380/703 (54%), Gaps = 23/703 (3%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQRNLVSWN----SMIAGYLHNDKVKEARELFDKMFRP 106
           S++  ++  G +     L   + +    S       ++  YL+  K  E  ++  +    
Sbjct: 26  SLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDGS 85

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           DL     MI+ Y + G L +AR LFD +P + + + W+A+++G  K G   E+    +  
Sbjct: 86  DLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVS-WSALISGLMKYGRVEESMWYFERN 144

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAW 222
           P +N+VSW + +SG+ +NG    A K F  + E  V    V++  ++    EL D     
Sbjct: 145 PFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGM 204

Query: 223 KFFQKIPEQNVVSWVT----MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
                + +     +++    +++   R G +  ARR+FD+M  R+VV+W A++ AYV+ G
Sbjct: 205 SILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETG 264

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK----NIAAQTAMIS 334
            + EA R+F EMPERN +SW+ MI  Y +    +EA +L  +M  +    NI+     +S
Sbjct: 265 DLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLS 324

Query: 335 GYVQNKRMDEANQI---FDKIGT-HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
                + +     I     KIG   DV   + +I  Y +CG+ D+   +F  ++ K++V 
Sbjct: 325 ALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVC 384

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
           WN+M+ GY+ I    +  +   E+   +N VSW  +I+G+L+NE     L++F  +   G
Sbjct: 385 WNSMVGGYS-INGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSG 443

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
           +  + ST +  L ACA +A+L  G  +H   IK G   D+FVG +L  MYAKCG I +++
Sbjct: 444 QTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSK 503

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG-VAPDPVTFIGVLSACSHV 569
            +F+     + ISW  +I G A +G A E++ LFEEM     VAP+ +  + VL ACSH 
Sbjct: 504 QVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHC 563

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629
           GLVD GL  F  M +VY I+P  +HY C++DLLSR+GRL EA E ++ +  +P A  W  
Sbjct: 564 GLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWAA 623

Query: 630 LLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689
           LL  C+ +++ K+     +KL +L    ++ Y LLSN++A AGRW +V  +R  M   G 
Sbjct: 624 LLSGCKKYKDEKIAERTAKKLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGL 683

Query: 690 QKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +K  GCSW+EV+NQ+H+F S D    ++ EI  TL+ L ++++
Sbjct: 684 KKSGGCSWVEVRNQVHSFYSEDGSHSQSNEIYGTLQLLRSEMK 726



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 126/472 (26%), Positives = 232/472 (49%), Gaps = 59/472 (12%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS +   N  I+   + G + +A  +F +M ++N V+++++IS   K GRV ++   FE+
Sbjct: 84  GSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFER 143

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----RP-------------DLFSWAL- 113
            P +N+VSW + I+G++ N    EA +LF ++     RP             +L  + L 
Sbjct: 144 NPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLG 203

Query: 114 ---------------------MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAK 152
                                +IT   R GE++ AR +FD +  K D   W A++  Y +
Sbjct: 204 MSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRM-EKRDVVSWTAILDAYVE 262

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLM 208
            G+  EA+++ D MP +N +SW++M++ Y+++G    A K F  M +     ++  +   
Sbjct: 263 TGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACT 322

Query: 209 LDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV 264
           L     L  L +       +     +++V    +++  Y + G+  + R +FD +  +NV
Sbjct: 323 LSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNV 382

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLD----- 319
           V WN+M+  Y   G++EE   LF  +PE+N VSW T+I GY+   + ++   + +     
Sbjct: 383 VCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVS 442

Query: 320 -QMPYKNIAAQT--AMISGYVQNKRMDEANQIFDKIGT-HDVVCWNVMIKGYAQCGRMDE 375
            Q P K+  +    A  S    +K M+   +I  K+G  +D+     +   YA+CG +  
Sbjct: 443 GQTPNKSTFSSVLCACASIASLDKGMNVHGKII-KLGIQYDIFVGTALTDMYAKCGDIGS 501

Query: 376 AINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
           +  +F +M  K+ ++W  MI G A+     +++ +FEEM +R + V+ N L+
Sbjct: 502 SKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEM-ERTSEVAPNELM 552


>gi|358346115|ref|XP_003637117.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503052|gb|AES84255.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 592

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/613 (35%), Positives = 341/613 (55%), Gaps = 64/613 (10%)

Query: 53  ISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWA 112
           I ++    + ND       +PQ +L   N  I+  +   ++  AR LFD     +  +W 
Sbjct: 21  IRSFTSQTKTNDT------IPQ-SLYQLNKKISHLIRTGRLTAARTLFDSTNHRNTVTWN 73

Query: 113 LMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGN---YNEAKKLLDAMPSK 169
            MIT Y ++ E+ KAR+LFD +P + D   WN +++GY          E +KL D MP +
Sbjct: 74  SMITGYVQRREIAKARQLFDEMPLR-DIVSWNLIISGYFSCRGSRFVEEGRKLFDIMPQR 132

Query: 170 NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP 229
           + VSWN+++SGY KNG M  A + FE+M ER+VVS N +++G++   D+DSA  FF+K+ 
Sbjct: 133 DCVSWNTVISGYAKNGRMDQAIEIFESMPERNVVSCNAVVNGFLLNGDVDSAVGFFRKMG 192

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRN------VVAWNAMIAAYVQRGQIEEA 283
           E++  S   ++SG  RNG++  A  +  +           V A+N +IA Y QRG +EEA
Sbjct: 193 ERDSASLSGLVSGLVRNGKLDMAAEILVEYGNEGDEKDDLVYAYNTLIAGYGQRGMVEEA 252

Query: 284 ARLFIEMP-------------ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT 330
             +F  +              +RN VSW +M+  YV+   +  AR L D+M  ++  +  
Sbjct: 253 RHVFDGVMSDQGEGNEGKRRLKRNVVSWNSMMMCYVKAGDVVSARELFDRMVERDACSWN 312

Query: 331 AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
            +I GYVQ   M+EA+++F ++   DV+ WN +I G++Q G +      F  M +K++++
Sbjct: 313 TVIGGYVQIGDMEEASKLFLEMPIPDVLSWNSIISGFSQIGDLKRVKEFFENMPHKNLIS 372

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
           WN++IAGY                                 +NE +  A+++F  M  +G
Sbjct: 373 WNSVIAGYE--------------------------------KNEDYKGAIELFSQMQLKG 400

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
           ++ D  TL+  LS    L  L LG+QIH    K+  V DL + NSLITMY++CG I +A 
Sbjct: 401 ERPDRHTLSSILSVSTGLVDLYLGKQIHQFVTKT-VVPDLPINNSLITMYSRCGEIGDAR 459

Query: 511 LLFKDADPV-DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
            +F +     DVI+WN++I GYA +G A +A++LFE M    + P  +TFI VL+AC+H 
Sbjct: 460 HVFNEMKLYKDVITWNAMIGGYAFHGFAAQALELFERMKGLKIQPTYITFISVLNACAHA 519

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629
           GLV+ G + F  M   Y IEP VEH+A ++D+L R G+L EA +++  M +KP+  +WG 
Sbjct: 520 GLVEEGKRQFNSMINDYGIEPRVEHFASLVDILGRQGQLQEAMDLIVNMPVKPDKAVWGA 579

Query: 630 LLGACRMHQNIKL 642
           LLGACR+H N+ L
Sbjct: 580 LLGACRVHSNVDL 592



 Score =  253 bits (645), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 165/586 (28%), Positives = 292/586 (49%), Gaps = 96/586 (16%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           ++  NKKI+ L ++GR+  A  +F   + +NTVT+NSMI+ Y +   +  AR+LF++MP 
Sbjct: 38  LYQLNKKISHLIRTGRLTAARTLFDSTNHRNTVTWNSMITGYVQRREIAKARQLFDEMPL 97

Query: 75  RNLVSWNSMIAGYLH---NDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           R++VSWN +I+GY     +  V+E R+LFD M + D  SW  +I+ Y + G +++A E+F
Sbjct: 98  RDIVSWNLIISGYFSCRGSRFVEEGRKLFDIMPQRDCVSWNTVISGYAKNGRMDQAIEIF 157

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
           + +P +   +C NA+V G+   G+ + A      M  ++  S + ++SG  +NG++ +A+
Sbjct: 158 ESMPERNVVSC-NAVVNGFLLNGDVDSAVGFFRKMGERDSASLSGLVSGLVRNGKLDMAA 216

Query: 192 KFF-----EAMEERDVV-SWNLMLDGYVELDDLDSAWKFFQKIP-------------EQN 232
           +       E  E+ D+V ++N ++ GY +   ++ A   F  +              ++N
Sbjct: 217 EILVEYGNEGDEKDDLVYAYNTLIAGYGQRGMVEEARHVFDGVMSDQGEGNEGKRRLKRN 276

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE 292
           VVSW +M+  Y + G ++ AR LFD+M  R+  +WN +I  YVQ G +EEA++LF+EMP 
Sbjct: 277 VVSWNSMMMCYVKAGDVVSARELFDRMVERDACSWNTVIGGYVQIGDMEEASKLFLEMPI 336

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD-- 350
            + +SW ++I G+ +I  L   +   + MP+KN+ +  ++I+GY +N+    A ++F   
Sbjct: 337 PDVLSWNSIISGFSQIGDLKRVKEFFENMPHKNLISWNSVIAGYEKNEDYKGAIELFSQM 396

Query: 351 ------------------------------------KIGTHDVVCWNVMIKGYAQCGRMD 374
                                               K    D+   N +I  Y++CG + 
Sbjct: 397 QLKGERPDRHTLSSILSVSTGLVDLYLGKQIHQFVTKTVVPDLPINNSLITMYSRCGEIG 456

Query: 375 EAINLFRQM-VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433
           +A ++F +M + KD++TWN MI GYA       A+++FE M                   
Sbjct: 457 DARHVFNEMKLYKDVITWNAMIGGYAFHGFAAQALELFERM------------------- 497

Query: 434 EFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG-RQIHHLAIKSGYVNDLFV 492
                 LKI         +  + T    L+ACAH   ++ G RQ + +    G    +  
Sbjct: 498 ----KGLKI---------QPTYITFISVLNACAHAGLVEEGKRQFNSMINDYGIEPRVEH 544

Query: 493 GNSLITMYAKCGRIQNA-ELLFKDADPVDVISWNSLIAGYAINGNA 537
             SL+ +  + G++Q A +L+       D   W +L+    ++ N 
Sbjct: 545 FASLVDILGRQGQLQEAMDLIVNMPVKPDKAVWGALLGACRVHSNV 590


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 237/814 (29%), Positives = 412/814 (50%), Gaps = 131/814 (16%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  N  I    K   +E A K+F  M Q++TV++N+M+  YA  G +  A+KLF+ MP+
Sbjct: 77  VFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPE 136

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKAREL 130
           R++VSWNS+I+GYLHN   ++  ++F +M R     D  ++A+++   +   +     ++
Sbjct: 137 RDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQI 196

Query: 131 FDL---LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
             L   +    D    +A++  YAK    + + +   +MP KN VSW+++++G  +N ++
Sbjct: 197 HGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDL 256

Query: 188 HLASKFFEAMEE---------------------------------------RDVVSWNLM 208
               + F+ M++                                        DVV     
Sbjct: 257 RGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTAT 316

Query: 209 LDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF----------DQ 258
           LD Y++ ++L  A K F  +P  N+ S+  ++ GYAR+ + +EA  +F          D+
Sbjct: 317 LDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDE 376

Query: 259 MPI-----------------------------RNVVAWNAMIAAYVQRGQIEEAARLFIE 289
           + +                              N+   NA++  Y + G + EA  +F E
Sbjct: 377 VSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEE 436

Query: 290 MPERNPVSWTTMIDGYVRIAKLDEARRLL----------DQMPYKNIAAQTAMISGY-VQ 338
           M  R+ VSW  +I  + +    ++   L           D+  Y ++    A   G+   
Sbjct: 437 MVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACA---GWQAL 493

Query: 339 NKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGY 398
           N  M+  N+I       D      +I  Y++CG M++A  L  ++  + +V+WN +I+G+
Sbjct: 494 NCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGF 553

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           +  +Q ++A K F +                                M + G   D+ T 
Sbjct: 554 SLQKQSEEAQKTFSK--------------------------------MLEMGVDPDNFTY 581

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
           A  L  CA+L  ++LG+QIH   IK    +D ++ ++L+ MY+KCG +Q+ +L+F+ A  
Sbjct: 582 ATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPN 641

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
            D ++WN+++ GYA +G   EA+K+FE M +E V P+  TF+ VL AC H+GLV+ GL  
Sbjct: 642 RDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHY 701

Query: 579 FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQ 638
           F  M   Y ++P +EHY+C++D++ R+G++ +A E+++GM  + +A IW TLL  C++H 
Sbjct: 702 FHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIHG 761

Query: 639 NIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWI 698
           N+++   A   + +LEP+ ++ Y LLSN++A AG W+EV K+R  M  +G +K+PGCSWI
Sbjct: 762 NVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWI 821

Query: 699 EVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           E+K+++H FL GD    R+ EI   L  L  +++
Sbjct: 822 EIKSEVHAFLVGDKAHPRSKEIYENLDVLTDEMK 855



 Score =  236 bits (602), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 174/621 (28%), Positives = 290/621 (46%), Gaps = 94/621 (15%)

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           F+P +F    +I  Y +  +LE A ++FD +P + DT  WNAM+ GYA  G+   A+KL 
Sbjct: 73  FKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQR-DTVSWNAMLFGYAGRGDIGVAQKLF 131

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFF----------------------EAMEER- 200
           DAMP +++VSWNS++SGY  NG+       F                       ++E+  
Sbjct: 132 DAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHG 191

Query: 201 ----------------DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYA 244
                           DVV+ + +LD Y +   LD + +FF  +PE+N VSW  +++G  
Sbjct: 192 GGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCV 251

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER--------NPV 296
           +N  +     LF +M    V    +  A+  +      A RL  ++           + V
Sbjct: 252 QNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVV 311

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF------- 349
             T  +D Y++   L +A++L + +P  N+ +  A+I GY ++ +  EA  +F       
Sbjct: 312 IGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSG 371

Query: 350 ---DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDD 406
              D++          +IKG  + G     +++ + +   +I   N ++  Y +   + +
Sbjct: 372 LGLDEVSLSGAFRACAVIKGDLE-GLQVHGLSM-KSLCQSNICVANAILDMYGKCGALVE 429

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
           A  +FEEM   R+ VSWNA+I+   QN      L +FV M Q G + D  T    L ACA
Sbjct: 430 ACLVFEEM-VSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACA 488

Query: 467 HLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNS 526
              AL  G +IH+  IKS    D FVG +LI MY+KCG ++ AE L        V+SWN+
Sbjct: 489 GWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNA 548

Query: 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF------E 580
           +I+G+++   + EA K F +M+  GV PD  T+  +L  C+++  V+ G ++       E
Sbjct: 549 IISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKE 608

Query: 581 CMTEVYAIEPLVEHYA------------------------CMIDLLSRAGRLDEAFEMVK 616
             ++ Y    LV+ Y+                         M+   ++ G  +EA ++ +
Sbjct: 609 LQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFE 668

Query: 617 GMK---IKPNAGIWGTLLGAC 634
            M+   +KPN   +  +L AC
Sbjct: 669 YMQLENVKPNHATFLAVLRAC 689



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 98/244 (40%), Gaps = 33/244 (13%)

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
            Q++     L I    + +       T +     C+   AL  G+Q H   I + +   +
Sbjct: 18  FQSKSPFKTLPISPFSSYQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTV 77

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSL----------------------- 527
           FV N LI MY KC  ++ A  +F      D +SWN++                       
Sbjct: 78  FVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPER 137

Query: 528 --------IAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
                   I+GY  NG+  + I +F +M   G   D  TF  VL +CS +    GG+++ 
Sbjct: 138 DVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIH 197

Query: 580 ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
               ++   +  V   + ++D+ ++  +LD + +    M  K N   W  ++  C  + +
Sbjct: 198 GLAVKM-GFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEK-NWVSWSAIIAGCVQNDD 255

Query: 640 IKLG 643
           ++ G
Sbjct: 256 LRGG 259


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 236/764 (30%), Positives = 406/764 (53%), Gaps = 68/764 (8%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKV 93
           A K+F +MSQ++ ++YN+MIS YA  G +N A + F   P+R++VSWNSM++G+L N + 
Sbjct: 97  AYKVFEKMSQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGEC 156

Query: 94  KEARELFDKMFRPD-------LFSWALMITCYTRKGELE-KARELFDLLPNKEDTACWNA 145
           +++ ++F  M R +        F+  L        G L  +   L   +   +D    +A
Sbjct: 157 RKSIDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSA 216

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV-VS 204
           ++  YAK    +++ K+   +P KN V W+++++G  +N E  L  + F+ M++  + VS
Sbjct: 217 LLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVS 276

Query: 205 WNLMLDGYVELDDLDSAWKFFQKIPEQ--------NVVSWVTMLSGYARNGRMLEARRLF 256
            ++    +     L SA K   ++           ++      L  YA+ G + +A+R+F
Sbjct: 277 QSIYASVFRSCAGL-SALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIF 335

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLD 312
           + +P  ++  +NA+I   V+  +  EA + F  + +     N +S +        I K D
Sbjct: 336 NSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASI-KGD 394

Query: 313 EARRLLDQMPYK-----NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367
              R L  +  K     NI    +++  Y + + + EA  +FD++   D V WN +I  +
Sbjct: 395 LDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAH 454

Query: 368 AQCGRMDEAINLFRQMV----NKDIVTWNTMIAG-------------------------- 397
            Q G  +E +NLF  M+      D  T+ +++                            
Sbjct: 455 EQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDS 514

Query: 398 ---------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
                    Y +   +++A KI + + +++  VSWNA+I+GF   +   DA   F  M +
Sbjct: 515 FVGGALIDMYCKCGMIEEAKKIHDRI-EQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLK 573

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
              K D+ T A  L ACA+LA++ LG+QIH   IK    +D+++ ++L+ MY+KCG +Q+
Sbjct: 574 MSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQD 633

Query: 509 AELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
           + L+F+ A   D ++WN++I GYA +G   EA+  FE M +E V P+  TF+ +L AC+H
Sbjct: 634 SALVFEKAPNKDFVTWNAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAH 693

Query: 569 VGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWG 628
           +G +D GL  F  M   Y +EP +EHY+CMID++ R+GR+ EA ++++ M  + +A IW 
Sbjct: 694 MGFIDKGLHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEADAVIWR 753

Query: 629 TLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688
           TLL  C++H NI++   A   + +LEP+ +S   LLSN++A+AG W +V ++R  M  + 
Sbjct: 754 TLLSICKIHGNIEIAEKATNAILQLEPEDSSACILLSNIYADAGMWGKVSEMRKMMRYNK 813

Query: 689 AQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            +K+PGCSWIEVK+++H FL G+    R  EI   L  L  +++
Sbjct: 814 LKKEPGCSWIEVKDEVHAFLVGNKTHPRYEEIYKILSVLLDEMK 857



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 154/614 (25%), Positives = 293/614 (47%), Gaps = 71/614 (11%)

Query: 96  ARELFDKMFRPDLFSWALMITCYTRKGEL-EKARELFDLLPNKEDTACWNAMVAGYAKIG 154
           +R L++K  R  +F++  + T    + +L  K R    ++    D   +N++     K G
Sbjct: 13  SRILYNKTLR--IFTFCTISTLQQNQTKLPTKIRTFSHIIQECSD---YNSL-----KPG 62

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE 214
               A+ ++        +S N ++  Y +   ++ A K FE M +RDV+S+N M+ GY +
Sbjct: 63  KQAHARMIVSGFIPDVYIS-NCLMKMYLRCSHLNYAYKVFEKMSQRDVISYNTMISGYAD 121

Query: 215 LDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
             +++ A +FF   P+++VVSW +MLSG+ +NG   ++  +F  M     V ++    A 
Sbjct: 122 AGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTTFAV 181

Query: 275 VQRG-QIEEAARLFIEMP--------ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           V +   + E   L I++          ++ V+ + ++D Y +  +LD++ ++  ++P KN
Sbjct: 182 VLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKN 241

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDV-VCWNVMIKGYAQCGRMDEAINLFRQM- 383
               +A+I+G VQN       ++F ++    + V  ++    +  C  +  A+ +  Q+ 
Sbjct: 242 WVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLS-ALKVGTQLH 300

Query: 384 -------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
                     DI      +  YA+   + DA +IF  + K  +   +NA+I G ++NE  
Sbjct: 301 AHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPK-HSLQCYNAIIVGCVRNEKG 359

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSL 496
            +AL+ F L+ + G   +  +L+ A SACA +     GRQ+H L++KS   +++ V NS+
Sbjct: 360 FEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNICVANSI 419

Query: 497 ITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
           + MY KC  +  A  +F + +  D +SWN++IA +  NGN  E + LF  M+   + PD 
Sbjct: 420 LDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQ 479

Query: 557 VTFIGVLSACSHVGLVDGGLKLF-ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA---- 611
            T+  VL ACS    ++ G+++    +     ++  V     +ID+  + G ++EA    
Sbjct: 480 FTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVG--GALIDMYCKCGMIEEAKKIH 537

Query: 612 -------------------------------FEMVKGMKIKPNAGIWGTLLGACRMHQNI 640
                                          +EM+K M +KP+   +  +L AC    ++
Sbjct: 538 DRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLK-MSVKPDNFTYAIVLDACANLASV 596

Query: 641 KLGRIAVEKLSELE 654
            LG+    ++ +LE
Sbjct: 597 GLGKQIHGQIIKLE 610



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/426 (21%), Positives = 190/426 (44%), Gaps = 50/426 (11%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS +      +    K G + +A +IF+ + + +   YN++I    +N +  +A + F+ 
Sbjct: 309 GSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQL 368

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           + +  L                      F+++     FS      C + KG+L+  R+L 
Sbjct: 369 LLKSGLG---------------------FNEISLSGAFS-----ACASIKGDLD-GRQLH 401

Query: 132 DLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
            L      + +    N+++  Y K    +EA  + D M  ++ VSWN++++ + +NG   
Sbjct: 402 SLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEE 461

Query: 189 LASKFFEAM----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV--SWV--TML 240
                F +M     E D  ++  +L        L+S  +   +I +  +   S+V   ++
Sbjct: 462 ETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALI 521

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPV 296
             Y + G + EA+++ D++  + +V+WNA+IA +      E+A   F EM     + +  
Sbjct: 522 DMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNF 581

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMP----YKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
           ++  ++D    +A +   +++  Q+     + ++   + ++  Y +   M ++  +F+K 
Sbjct: 582 TYAIVLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKA 641

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAV 408
              D V WN MI GYAQ G  +EA+  F +M    V  +  T+ +++   A +  +D  +
Sbjct: 642 PNKDFVTWNAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGL 701

Query: 409 KIFEEM 414
             F  M
Sbjct: 702 HYFNAM 707



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/271 (24%), Positives = 119/271 (43%), Gaps = 57/271 (21%)

Query: 418 RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHS-------TLACALSACAHLAA 470
           ++T S   + S  L N+     L+IF   T    + + +       T +  +  C+   +
Sbjct: 3   KHTSSLRLIASRILYNK----TLRIFTFCTISTLQQNQTKLPTKIRTFSHIIQECSDYNS 58

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
           L+ G+Q H   I SG++ D+++ N L+ MY +C  +  A  +F+     DVIS+N++I+G
Sbjct: 59  LKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKMSQRDVISYNTMISG 118

Query: 531 YA-------------------------------INGNATEAIKLFEEM-VMEGVAPDPVT 558
           YA                                NG   ++I +F +M   E V  D  T
Sbjct: 119 YADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTT 178

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHY------ACMIDLLSRAGRLDEAF 612
           F  VL ACS   L DGGL +     +V+ +   +  Y      + ++D+ ++  RLD++ 
Sbjct: 179 FAVVLKACS--VLEDGGLGI-----QVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSL 231

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLG 643
           ++   + +K N   W  ++  C  +    LG
Sbjct: 232 KIFSEIPVK-NWVCWSAIIAGCVQNDEHILG 261



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 76/163 (46%), Gaps = 9/163 (5%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V+  +  +    K G ++++  +F +   K+ VT+N+MI  YA++G   +A   FE+M
Sbjct: 613 SDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAMICGYAQHGLGEEALGYFERM 672

Query: 73  PQRNL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGE 123
              N+     ++ S++    H   + +    F+ M       P +  ++ MI    R G 
Sbjct: 673 QLENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGR 732

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           + +A +L   +P + D   W  +++     GN   A+K  +A+
Sbjct: 733 ISEALKLIQEMPFEADAVIWRTLLSICKIHGNIEIAEKATNAI 775


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 227/632 (35%), Positives = 348/632 (55%), Gaps = 67/632 (10%)

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
           +++    S  I   N ++  Y K G +  A K F+ M++R+  SWN +L    +   LD 
Sbjct: 44  RIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGALDE 103

Query: 221 AWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM--------------------- 259
           A   F+ +PE++  SW  M+SG+A+  R  EA R    M                     
Sbjct: 104 ALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAG 163

Query: 260 --------PIRNVVA----------WNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTM 301
                    I  ++A           +A++  Y +   +  A R F +M  RN VSW ++
Sbjct: 164 LMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSL 223

Query: 302 IDGYVRIAKLDEARRLL----------DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK 351
           I  Y +     +A  +           D++   ++A+  A +S       + E  QI  +
Sbjct: 224 ITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSA------IREGLQIHAR 277

Query: 352 IGTH-----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDD 406
           +  H     D+V  N ++  YA+C R++EA  +F +M  +D+V+  +M++GYA+   +  
Sbjct: 278 VMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKA 337

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
           A  +F  M   RN VSWNALI+G+ QN  + +A+++F+L+ +E     H T    L+ACA
Sbjct: 338 ARLMFSNM-MERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACA 396

Query: 467 HLAALQLGRQIH-HLA-----IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVD 520
           +LA L+LGRQ H H+       KSG  +D+FVGNSLI MY KCG +++  L+F+     D
Sbjct: 397 NLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERD 456

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE 580
            +SWN++I GYA NG  TEA+++F EM++ G  PD VT IGVLSACSH GLV+ G   F+
Sbjct: 457 NVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQ 516

Query: 581 CMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNI 640
            MT  + + P+ +HY CM+DLL RAG LDEA  +++ M ++P+A +WG+LL AC++H NI
Sbjct: 517 SMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGNI 576

Query: 641 KLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEV 700
            LG+   E+L E++P  +  Y LLSNM+AE GRW +V +VR  M   G  KQPGCSWI +
Sbjct: 577 TLGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQPGCSWISI 636

Query: 701 KNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           ++ +H F+  D +     +I   LK L  Q++
Sbjct: 637 QSHLHVFMVKDKRHPHKKDIYLILKILTEQMK 668



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/433 (28%), Positives = 213/433 (49%), Gaps = 61/433 (14%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F QN+ +   GK G +E+A K+F  M Q+NT ++N+++ A  K G +++A  LF+ M
Sbjct: 52  SEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCM 111

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL----FSWALMITCYTRKGELEKAR 128
           P+R+  SWN+M++G+   D+ +EA      M   D     +S+   ++      +L    
Sbjct: 112 PERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGV 171

Query: 129 ELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
           ++  L+       D    +A+V  Y+K      A++  D M  +NIVSWNS+++ Y +NG
Sbjct: 172 QIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNG 231

Query: 186 --------------------EMHLAS-----KFFEAMEE---------------RDVVSW 205
                               E+ LAS         A+ E                D+V  
Sbjct: 232 PAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLG 291

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
           N ++D Y +   ++ A   F ++P ++VVS  +M+SGYA+   +  AR +F  M  RNVV
Sbjct: 292 NALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVV 351

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWT--TMIDGYVRIAKLDEARRLLDQM 321
           +WNA+IA Y Q G+ EEA RLF+ +   +  P  +T   +++    +A L   R+    +
Sbjct: 352 SWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHI 411

Query: 322 ----------PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
                        +I    ++I  Y++   +++   +F+++   D V WN MI GYAQ G
Sbjct: 412 LKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNG 471

Query: 372 RMDEAINLFRQMV 384
              EA+ +FR+M+
Sbjct: 472 YGTEALEIFREML 484



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 147/285 (51%), Gaps = 36/285 (12%)

Query: 298 WTTMIDGYVRIAKLDEAR----RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
           +  ++D  V+   + EAR    R++       I  Q  ++  Y +   +++A ++FD + 
Sbjct: 22  FAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQ 81

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEE 413
             +   WN ++    + G +DEA+NLF+ M  +D  +WN M++G+AQ  + ++A++   +
Sbjct: 82  QRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVD 141

Query: 414 MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQL 473
           M               F+ NE+                     +   ALSACA L  L +
Sbjct: 142 MHSE-----------DFVLNEY---------------------SFGSALSACAGLMDLSI 169

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           G QIH L  KS Y  D+++G++L+ MY+KC  + +A+  F D D  +++SWNSLI  Y  
Sbjct: 170 GVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQ 229

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
           NG A +A+++F  M+  G+ PD +T   V SAC+ +  +  GL++
Sbjct: 230 NGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQI 274



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 144/311 (46%), Gaps = 35/311 (11%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           + + V  N+++  YAK  RVN+AR +F++MP R++VS  SM++GY     VK AR +F  
Sbjct: 285 RNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSN 344

Query: 103 MFRPDLFSWALMITCYTRKGELEKARELFDLLPNKED-----------TACWNAMVAGYA 151
           M   ++ SW  +I  YT+ GE E+A  LF LL  +              AC N       
Sbjct: 345 MMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACAN---LADL 401

Query: 152 KIGNYNEAKKL-----LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN 206
           K+G       L       +    +I   NS++  Y K G +      FE M ERD VSWN
Sbjct: 402 KLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWN 461

Query: 207 LMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR 262
            M+ GY +      A + F+++       + V+ + +LS  +  G + E R  F  M I 
Sbjct: 462 AMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIE 521

Query: 263 NVVA-----WNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTM-----IDGYVRIAKL 311
           + +      +  M+    + G ++EA  L   MP E + V W ++     + G + + K 
Sbjct: 522 HGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGNITLGKY 581

Query: 312 DEARRLLDQMP 322
             A RLL+  P
Sbjct: 582 -VAERLLEIDP 591



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 154/337 (45%), Gaps = 26/337 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +    K  RV EA  +F +M  ++ V+  SM+S YAK   V  AR +F  M +RN+V
Sbjct: 292 NALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVV 351

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLL 134
           SWN++IAGY  N + +EA  LF  + R    P  +++  ++       +L+  R+    +
Sbjct: 352 SWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHI 411

Query: 135 -------PNKEDTACW--NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
                   + ED+  +  N+++  Y K G   + + + + M  ++ VSWN+M+ GY +NG
Sbjct: 412 LKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNG 471

Query: 186 EMHLASKFFEAM----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-EQNVVS----W 236
               A + F  M    E  D V+   +L        ++    +FQ +  E  +V     +
Sbjct: 472 YGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHY 531

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPE 292
             M+    R G + EA  L   MP+  + V W +++AA    G I   +  A   +E+  
Sbjct: 532 TCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGNITLGKYVAERLLEIDP 591

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
            N   +  + + Y  + +  +  R+  QM    +  Q
Sbjct: 592 LNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQ 628



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 15/169 (8%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F  N  I    K G VE+   +F +M +++ V++N+MI  YA+NG   +A ++F +M
Sbjct: 424 SDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREM 483

Query: 73  ----PQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGE 123
                + + V+   +++   H   V+E R  F  M       P    +  M+    R G 
Sbjct: 484 LVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGC 543

Query: 124 LEKARELFDLLPNKEDTACWNAMVA-----GYAKIGNYNEAKKLLDAMP 167
           L++A  L   +P + D   W +++A     G   +G Y  A++LL+  P
Sbjct: 544 LDEANNLIQTMPMEPDAVVWGSLLAACKVHGNITLGKY-VAERLLEIDP 591



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 48/94 (51%)

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
           D S  A  L  C    ++   R +H   IK+ + +++F+ N L+ +Y KCG +++A  +F
Sbjct: 18  DSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVF 77

Query: 514 KDADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
                 +  SWN+++      G   EA+ LF+ M
Sbjct: 78  DHMQQRNTFSWNAVLGALTKFGALDEALNLFKCM 111


>gi|413917533|gb|AFW57465.1| hypothetical protein ZEAMMB73_932577 [Zea mays]
          Length = 677

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/633 (34%), Positives = 363/633 (57%), Gaps = 12/633 (1%)

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           N    N+++  Y    ++++A++LFD+M R D+ SW  ++T Y   G+   AR +FD +P
Sbjct: 38  NRAHLNALLTSYGRRGRIQDAQQLFDRMPRRDVISWTALLTAYAEGGDFASARLVFDDMP 97

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
            + +   WNA+++ Y   G    A  L    P+KN VS+  +++G  + G +  A   + 
Sbjct: 98  -RRNAVSWNALLSLYLGAGRPAAAHALFCKTPAKNAVSYGVIITGLARAGMLREAQAVYG 156

Query: 196 AMEER--DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEAR 253
            M  R  D V  N M+ GY+   ++D A + F  +  ++V+SW +M+ G  + G + EAR
Sbjct: 157 EMPPRLRDPVGSNAMILGYLRAGEIDMALRVFDTMAARDVISWSSMVDGLCKYGTVSEAR 216

Query: 254 RLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIA 309
           RLF+ MP RNVV+W +M+  YV+ G   E   LF++M       N ++ + ++DG  + +
Sbjct: 217 RLFEAMPERNVVSWTSMVRGYVKCGMYREGLLLFLDMRREGVQVNAITLSVVLDGCAQAS 276

Query: 310 KLDEARR---LLDQMPY-KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIK 365
            + E  +   L+ +M +  +I    ++I  Y +   M +A ++F  +   D+V WN +I 
Sbjct: 277 LVGEGIQVHCLMTRMGFVTDIFLDGSLIIMYSRFGWMVDARRVFAFMKQKDIVSWNSLIT 336

Query: 366 GYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
           GY Q   +++A  LF+ M  +D ++W +++ G+A    M ++V++FE+M   ++ ++W A
Sbjct: 337 GYVQNNMIEDAHVLFKLMPERDAISWTSVVVGFANRGWMRESVELFEQM-PVKDDIAWTA 395

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485
           +IS F+ N  H+  ++ F  M+QEG + + +  +C LSA A LA L  G Q H  A+  G
Sbjct: 396 VISSFIANGNHVSVVRWFCQMSQEGCRPNTAAFSCLLSALASLAMLNQGLQAHAYAVNMG 455

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
           ++ D  V  SL+TMYAKCGR+  A  +F       +++ NS+I+ +A +G A +A+KLF 
Sbjct: 456 WIFDSAVHASLVTMYAKCGRLAEAHRVFSCIRNPSLVAINSMISAFAQHGLAEDALKLFN 515

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRA 605
            M  +G  P+ VTF+G+L+AC+  GLV  G   FE M  VY I+P  +HY CM++LL  A
Sbjct: 516 RMQYDGQRPNHVTFLGILTACARAGLVQQGYNYFESMRSVYGIQPNPDHYTCMVNLLGHA 575

Query: 606 GRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLS 665
           G LDEA EM+  M  K     W  LL +  +H N+ L ++A ++L E++P  T+ Y +L+
Sbjct: 576 GFLDEALEMINSMPQKDYPDAWAALLSSSSLHSNLDLAKLAAQRLLEIDPYDTTAYRVLT 635

Query: 666 NMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWI 698
           NM + AG   + E V+V+   + A K+PG S I
Sbjct: 636 NMFSSAGLKGDEEMVKVAQLSNMASKRPGYSLI 668



 Score =  246 bits (627), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 144/504 (28%), Positives = 262/504 (51%), Gaps = 49/504 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +T  G+ GR+++A ++F +M +++ +++ ++++AYA+ G    AR +F+ MP+RN V
Sbjct: 43  NALLTSYGRRGRIQDAQQLFDRMPRRDVISWTALLTAYAEGGDFASARLVFDDMPRRNAV 102

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK- 137
           SWN++++ YL   +   A  LF K    +  S+ ++IT   R G L +A+ ++  +P + 
Sbjct: 103 SWNALLSLYLGAGRPAAAHALFCKTPAKNAVSYGVIITGLARAGMLREAQAVYGEMPPRL 162

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            D    NAM+ GY + G  + A ++ D M +++++SW+SM+ G  K G +  A + FEAM
Sbjct: 163 RDPVGSNAMILGYLRAGEIDMALRVFDTMAARDVISWSSMVDGLCKYGTVSEARRLFEAM 222

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSG----------- 242
            ER+VVSW  M+ GYV+          F  +  +    N ++   +L G           
Sbjct: 223 PERNVVSWTSMVRGYVKCGMYREGLLLFLDMRREGVQVNAITLSVVLDGCAQASLVGEGI 282

Query: 243 ------------------------YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
                                   Y+R G M++ARR+F  M  +++V+WN++I  YVQ  
Sbjct: 283 QVHCLMTRMGFVTDIFLDGSLIIMYSRFGWMVDARRVFAFMKQKDIVSWNSLITGYVQNN 342

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
            IE+A  LF  MPER+ +SWT+++ G+     + E+  L +QMP K+  A TA+IS ++ 
Sbjct: 343 MIEDAHVLFKLMPERDAISWTSVVVGFANRGWMRESVELFEQMPVKDDIAWTAVISSFIA 402

Query: 339 NKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVT 390
           N       + F ++       +   ++ ++   A    +++ +      VN     D   
Sbjct: 403 NGNHVSVVRWFCQMSQEGCRPNTAAFSCLLSALASLAMLNQGLQAHAYAVNMGWIFDSAV 462

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
             +++  YA+  ++ +A ++F  + +  + V+ N++IS F Q+    DALK+F  M  +G
Sbjct: 463 HASLVTMYAKCGRLAEAHRVFSCI-RNPSLVAINSMISAFAQHGLAEDALKLFNRMQYDG 521

Query: 451 KKADHSTLACALSACAHLAALQLG 474
           ++ +H T    L+ACA    +Q G
Sbjct: 522 QRPNHVTFLGILTACARAGLVQQG 545



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 107/463 (23%), Positives = 191/463 (41%), Gaps = 93/463 (20%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP- 73
           V + +  +  L K G V EA ++F  M ++N V++ SM+  Y K G   +   LF  M  
Sbjct: 196 VISWSSMVDGLCKYGTVSEARRLFEAMPERNVVSWTSMVRGYVKCGMYREGLLLFLDMRR 255

Query: 74  ---QRNLVSWNSMIAGYLHNDKVKEARE---LFDKM-FRPDLFSWALMITCYTRKGELEK 126
              Q N ++ + ++ G      V E  +   L  +M F  D+F    +I  Y+R G +  
Sbjct: 256 EGVQVNAITLSVVLDGCAQASLVGEGIQVHCLMTRMGFVTDIFLDGSLIIMYSRFGWMVD 315

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           AR +F  +  K D   WN+++ GY +     +A  L   MP ++ +SW S++ G+   G 
Sbjct: 316 ARRVFAFMKQK-DIVSWNSLITGYVQNNMIEDAHVLFKLMPERDAISWTSVVVGFANRGW 374

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSG 242
           M  + + FE M  +D ++W  ++  ++   +  S  ++F ++ ++    N  ++  +LS 
Sbjct: 375 MRESVELFEQMPVKDDIAWTAVISSFIANGNHVSVVRWFCQMSQEGCRPNTAAFSCLLSA 434

Query: 243 -----------------------------------YARNGRMLEARRLFDQMPIRNVVAW 267
                                              YA+ GR+ EA R+F  +   ++VA 
Sbjct: 435 LASLAMLNQGLQAHAYAVNMGWIFDSAVHASLVTMYAKCGRLAEAHRVFSCIRNPSLVAI 494

Query: 268 NAMIAAYVQRGQIEEAARLFIEMP------------------------------------ 291
           N+MI+A+ Q G  E+A +LF  M                                     
Sbjct: 495 NSMISAFAQHGLAEDALKLFNRMQYDGQRPNHVTFLGILTACARAGLVQQGYNYFESMRS 554

Query: 292 ----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI----AAQTAMISGYVQNKRMD 343
               + NP  +T M++       LDEA  +++ MP K+     AA  +  S +       
Sbjct: 555 VYGIQPNPDHYTCMVNLLGHAGFLDEALEMINSMPQKDYPDAWAALLSSSSLHSNLDLAK 614

Query: 344 EANQIFDKIGTHDVVCWNVMIKGYAQCG-RMDEAINLFRQMVN 385
            A Q   +I  +D   + V+   ++  G + DE +    Q+ N
Sbjct: 615 LAAQRLLEIDPYDTTAYRVLTNMFSSAGLKGDEEMVKVAQLSN 657


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 237/756 (31%), Positives = 407/756 (53%), Gaps = 72/756 (9%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           Q +T   N +I+  +K+ RV++AR +F++MP +NL++W+SM++ Y      +EA  +F  
Sbjct: 59  QSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVD 118

Query: 103 MFR-----PDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIG 154
           + R     P+ F  A +I   T+ G +EK  +L   +      +D     +++  Y+K G
Sbjct: 119 LQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNG 178

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE 214
           N  EA+ + D +  K  V+W ++++GYTK G   ++ + F  M E +VV    ++   + 
Sbjct: 179 NIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLS 238

Query: 215 ----LDDLDSAWKF----FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA 266
               L+ L+   +      ++  E +V     ++  Y +  R+   R+LFDQM ++N+++
Sbjct: 239 ACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIIS 298

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPERNPVSW-------TTMIDGYVRIAKLDEARRLLD 319
           W  MI+ Y+Q     EA +LF EM   N + W       T+++        L++ R++  
Sbjct: 299 WTTMISGYMQNSFDWEAMKLFGEM---NRLGWKPDGFACTSVLTSCGSREALEQGRQVHA 355

Query: 320 QMPYKNIAA----QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
                N+ +    +  +I  Y ++  + +A ++FD +   +V+ +N MI+GY+   ++ E
Sbjct: 356 YTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSE 415

Query: 376 AINLFRQM---------------------------------------VNKDIVTWNTMIA 396
           A+ LF +M                                       V+ D+   + +I 
Sbjct: 416 ALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSALID 475

Query: 397 GYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHS 456
            Y++   + DA  +FEEM ++ + V WNA+  G+ Q+  + +ALK++  +    +K +  
Sbjct: 476 VYSKCSYVKDARHVFEEMNEK-DIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEF 534

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
           T A  ++A ++LA+L+ G+Q H+  +K G     FV N+L+ MYAKCG I+ A  +F  +
Sbjct: 535 TFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSS 594

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGL 576
              DV+ WNS+I+ +A +G A EA+ +F EM+ EG+ P+ VTF+ VLSACSH G V+ GL
Sbjct: 595 IWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGL 654

Query: 577 KLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRM 636
             F  M   + I+P  EHYAC++ LL R+G+L EA E ++ M I+P A +W +LL ACR+
Sbjct: 655 NHFNSMPG-FGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRI 713

Query: 637 HQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCS 696
             N++LG+ A E     +P+ +  Y LLSN+ A  G W +V+KVR  M+ S   K+PG S
Sbjct: 714 AGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRS 773

Query: 697 WIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           WIEV N+++ F++ D    R A+I + L  L   I+
Sbjct: 774 WIEVNNKVNVFIARDTTH-READIGSVLDILIQHIK 808



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 163/336 (48%), Gaps = 25/336 (7%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F +N  I    KS  + +A K+F  M+++N ++YN+MI  Y+   ++++A +LF +M  R
Sbjct: 367 FVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVR 426

Query: 76  ----NLVSWNSMI---AGYLHNDKVKEARELFDKM-FRPDLFSWALMITCYTRKGELEKA 127
               +L+++ S++   A     +  K+   L  K     DLF+ + +I  Y++   ++ A
Sbjct: 427 LFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDA 486

Query: 128 RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM----PSKNIVSWNSMLSGYTK 183
           R +F+ + N++D   WNAM  GY +     EA KL   +       N  ++ ++++  + 
Sbjct: 487 RHVFEEM-NEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASN 545

Query: 184 NGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTM 239
              +    +F   + +  +       N ++D Y +   ++ A K F     ++VV W +M
Sbjct: 546 LASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSM 605

Query: 240 LSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMP---- 291
           +S +A++G   EA  +F +M       N V + A+++A    G++E+    F  MP    
Sbjct: 606 ISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPGFGI 665

Query: 292 ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
           +     +  ++    R  KL EA+  +++MP +  A
Sbjct: 666 KPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAA 701



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 8/172 (4%)

Query: 477 IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGN 536
           IH   I SG  +D F+ N LI + +K  R+ NA ++F      ++I+W+S+++ Y+  G 
Sbjct: 49  IHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGY 108

Query: 537 ATEAIKLFEEMVME-GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHY 595
           + EA+ +F ++  + G  P+      V+ AC+ +G+V+ G +L   +      +  V   
Sbjct: 109 SEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVR-SGFDQDVYVG 167

Query: 596 ACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAV 647
             +ID  S+ G ++EA  +V     +  A  W T++         K GR AV
Sbjct: 168 TSLIDFYSKNGNIEEA-RLVFDQLSEKTAVTWTTIIAG-----YTKCGRSAV 213


>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
          Length = 728

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 228/662 (34%), Positives = 365/662 (55%), Gaps = 19/662 (2%)

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
           YL+  K  E  ++  +    DL     MI+ Y + G L +AR LFD +P + + + W+A+
Sbjct: 66  YLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVS-WSAL 124

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV---- 202
           ++G  K G   E+    +  P +N+VSW + +SG+ +NG    A K F  + E  V    
Sbjct: 125 ISGLMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPND 184

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT----MLSGYARNGRMLEARRLFDQ 258
           V++  ++    EL D          + +     +++    +++   R G +  ARR+FD+
Sbjct: 185 VTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDR 244

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
           M  R+VV+W A++ AYV+ G + EA R+F EMPERN +SW+ MI  Y +    +EA +L 
Sbjct: 245 MEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLF 304

Query: 319 DQMPYK----NIAAQTAMISGYVQNKRMDEANQI---FDKIGT-HDVVCWNVMIKGYAQC 370
            +M  +    NI+     +S     + +     I     KIG   DV   + +I  Y +C
Sbjct: 305 SKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKC 364

Query: 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
           G+ D+   +F  ++ K++V WN+M+ GY+ I    +  +   E+   +N  SW  +J+G+
Sbjct: 365 GKPDDGRLVFDLILEKNVVCWNSMVGGYS-INGRLEEXEELFELIPEKNDXSWGTIJAGY 423

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
           L+NE     L++F  +   G+  + ST +  L ACA +A+L  G  +H   IK G   D+
Sbjct: 424 LENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDI 483

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME 550
           FVG +L  MYAKCG I +++ +F+     + ISW  +I G A +G A E++ LFEEM   
Sbjct: 484 FVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERT 543

Query: 551 G-VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLD 609
             VAP+ +  + VL ACSH GLVD GL  F  M +VY I+P  +HY C++DLLSR+GRL 
Sbjct: 544 SEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLY 603

Query: 610 EAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHA 669
           EA E ++ +  +P A  W  LL  C+ +++ K+     +KL +L    ++ Y LLSN++A
Sbjct: 604 EAEEFIRTIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQLAENNSAGYVLLSNIYA 663

Query: 670 EAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAA 729
            AGRW +V  +R  M   G +K  GCSW+EV+NQ+H+F S D    ++ EI  TL+ L +
Sbjct: 664 SAGRWIDVSNIRKLMREKGLKKSGGCSWVEVRNQVHSFYSEDGSHSQSDEIYGTLQLLRS 723

Query: 730 QI 731
           ++
Sbjct: 724 EM 725



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 122/471 (25%), Positives = 228/471 (48%), Gaps = 57/471 (12%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS +   N  I+   + G + +A  +F +M ++N V+++++IS   K GRV ++   FE+
Sbjct: 84  GSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISGLMKYGRVEESMWYFER 143

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----RP-------------DLFSWAL- 113
            P +N+VSW + I+G++ N    EA +LF ++     RP             +L  + L 
Sbjct: 144 NPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLG 203

Query: 114 ---------------------MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAK 152
                                +IT   R GE++ AR +FD +  K D   W A++  Y +
Sbjct: 204 MSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRM-EKRDVVSWTAILDAYVE 262

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLM 208
            G+  EA+++ D MP +N +SW++M++ Y+++G    A K F  M +     ++  +   
Sbjct: 263 TGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACT 322

Query: 209 LDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV 264
           L     L  L +       +     +++V    +++  Y + G+  + R +FD +  +NV
Sbjct: 323 LSALASLRALSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNV 382

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLD----- 319
           V WN+M+  Y   G++EE   LF  +PE+N  SW T+J GY+   + ++   + +     
Sbjct: 383 VCWNSMVGGYSINGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVS 442

Query: 320 -QMPYKNIAAQT--AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
            Q P K+  +    A  S    +K M+   +I      +D+     +   YA+CG +  +
Sbjct: 443 GQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSS 502

Query: 377 INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
             +F +M  K+ ++W  MI G A+     +++ +FEEM +R + V+ N L+
Sbjct: 503 KQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEM-ERTSEVAPNELM 552



 Score = 44.7 bits (104), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 4/107 (3%)

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           G  +H   IK+G+ +  ++   L+ +Y  C +    + + K+ D  D++  N +I+ Y  
Sbjct: 40  GNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQ 99

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE 580
            GN  +A  LF+EM       + V++  ++S     G V+  +  FE
Sbjct: 100 WGNLVQARLLFDEM----PERNEVSWSALISGLMKYGRVEESMWYFE 142


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 232/684 (33%), Positives = 363/684 (53%), Gaps = 65/684 (9%)

Query: 81  NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP-NKED 139
           N ++  Y  +  V  AR+LF+++  PD  +   +IT Y   G LE  RE+F+  P    D
Sbjct: 52  NRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRD 111

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYT-------KNGEMH 188
           +  +NAM+ GYA  G+ + A +L  AM   +      ++ S+LS          + G+MH
Sbjct: 112 SVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMH 171

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVE--------LDDLDSAWKFFQKIPEQNVVSWVTML 240
            A      M        N +L  YV+           + SA K F ++P+++ ++W TM+
Sbjct: 172 CAV-VKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMI 230

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPV 296
           +GY RN  +  AR +F+ M      AWNAMI+ YV  G  +EA  L  +M     + + +
Sbjct: 231 TGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDI 290

Query: 297 SWTTMIDGYVRIAKLDEARRL--------LDQMPYKNIAAQTAMISGYVQNKRMDEANQI 348
           ++TT+I     +      +++        L+      ++   A+I+ Y +N ++DEA +I
Sbjct: 291 TYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKI 350

Query: 349 FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAV 408
           F  +   +++ WN ++ GY   GRM+EA + F +M  K+++T   MI+G AQ    D+ +
Sbjct: 351 FYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGL 410

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
           K+F++M            + GF   +F                       A AL+AC+ L
Sbjct: 411 KLFKQM-----------RLDGFEPCDF---------------------AFAGALTACSVL 438

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
            AL+ GRQ+H   +  GY + L VGN++I+MYAKCG ++ AE +F     VD++SWNS+I
Sbjct: 439 GALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMI 498

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI 588
           A    +G+  +AI+LF++M+ EGV PD +TF+ VL+ACSH GLV+ G   F  M E Y I
Sbjct: 499 AALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGI 558

Query: 589 EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVE 648
            P  +HYA M+DL  RAG    A  ++  M  KP A +W  LL  CR+H N+ LG  A E
Sbjct: 559 TPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAE 618

Query: 649 KLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFL 708
           +L +L PQ    Y LLSN++A+ GRW++V KVR  M     +K+P CSWIEV+N++H F+
Sbjct: 619 QLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVFM 678

Query: 709 SGDPKQCRTAEICNTLKTLAAQIR 732
             D        +   L+ L  +++
Sbjct: 679 VDDDVHPEVLSVYRYLEQLGLEMK 702



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 147/576 (25%), Positives = 261/576 (45%), Gaps = 85/576 (14%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQ---------------------------------RN 76
           N ++  Y K+  V  AR+LFE++P                                  R+
Sbjct: 52  NRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRD 111

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFD 132
            V +N+MI GY HN     A ELF  M    FRPD F++  +++        E+      
Sbjct: 112 SVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMH 171

Query: 133 LLPNKEDTAC-----WNAMVAGYAKIGN--------YNEAKKLLDAMPSKNIVSWNSMLS 179
               K    C      NA+++ Y K  +           A+KL D MP ++ ++W +M++
Sbjct: 172 CAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMIT 231

Query: 180 GYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VS 235
           GY +N +++ A + FEAM E    +WN M+ GYV       A    +K+    +    ++
Sbjct: 232 GYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDIT 291

Query: 236 WVTMLS-----GYARNGRMLEARRLFDQMPIRNVVAW---NAMIAAYVQRGQIEEAARLF 287
           + T++S     G  + G+ + A  L +++   +       NA+I  Y +  +++EA ++F
Sbjct: 292 YTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIF 351

Query: 288 IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347
             MP RN ++W  ++ GYV   +++EA+   ++MP KN+   T MISG  QN   DE  +
Sbjct: 352 YAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLK 411

Query: 348 IFDKIGTHDVVCWNVMIKG-YAQC---GRMDEAINLFRQMVN----KDIVTWNTMIAGYA 399
           +F ++        +    G    C   G ++    L  Q+V+      +   N MI+ YA
Sbjct: 412 LFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYA 471

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
           +   ++ A  +F  M    + VSWN++I+   Q+   + A+++F  M +EG   D  T  
Sbjct: 472 KCGVVEAAESVFVTM-PSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFL 530

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGYVN---DLFVGNSLITMYAKCGRIQNAELLF--- 513
             L+AC+H   ++ GR   +  ++S  +    D +    ++ ++ + G    A ++    
Sbjct: 531 TVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYA--RMVDLFCRAGMFSYARIVIDSM 588

Query: 514 --KDADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
             K   PV    W +L+AG  I+GN    I+  E++
Sbjct: 589 PSKPGAPV----WEALLAGCRIHGNMDLGIEAAEQL 620



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 166/323 (51%), Gaps = 22/323 (6%)

Query: 20  KKITQLG-KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           K+ ++LG     +  A K+F +M +++ +T+ +MI+ Y +N  +N AR++FE M +    
Sbjct: 196 KRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGA 255

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELF--- 131
           +WN+MI+GY+H    +EA  L  KM     + D  ++  +I+     G  +  +++    
Sbjct: 256 AWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYI 315

Query: 132 ---DLLPNKEDT-ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
              +L PN     +  NA++  Y K    +EA+K+  AMP +NI++WN++LSGY   G M
Sbjct: 316 LKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRM 375

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLS-- 241
             A  FFE M  +++++  +M+ G  +    D   K F+++     E    ++   L+  
Sbjct: 376 EEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTAC 435

Query: 242 ---GYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW 298
              G   NGR L A +L       ++   NAMI+ Y + G +E A  +F+ MP  + VSW
Sbjct: 436 SVLGALENGRQLHA-QLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSW 494

Query: 299 TTMIDGYVRIAKLDEARRLLDQM 321
            +MI    +     +A  L DQM
Sbjct: 495 NSMIAALGQHGHGVKAIELFDQM 517



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 168/344 (48%), Gaps = 22/344 (6%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
            N  IT   K+ +V+EA KIF  M  +N +T+N+++S Y   GR+ +A+  FE+MP +NL
Sbjct: 331 SNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNL 390

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDL 133
           ++   MI+G   N    E  +LF +M    F P  F++A  +T  +  G LE  R+L   
Sbjct: 391 LTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQ 450

Query: 134 LPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           L +   +   +  NAM++ YAK G    A+ +   MPS ++VSWNSM++   ++G    A
Sbjct: 451 LVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKA 510

Query: 191 SKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLS 241
            + F+ M +     D +++  +L        ++    +F  + E   ++     +  M+ 
Sbjct: 511 IELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVD 570

Query: 242 GYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQ----IEEAARLFIEMPERNPV 296
            + R G    AR + D MP +     W A++A     G     IE A +LF  MP+ N  
Sbjct: 571 LFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQ-NDG 629

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340
           ++  + + Y  + + ++  ++   M  + +  + A     V+NK
Sbjct: 630 TYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENK 673


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 225/717 (31%), Positives = 377/717 (52%), Gaps = 61/717 (8%)

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAR 128
           P  N+  WNS+I    HN    EA  L+ +  R    PD +++  +I       + E A+
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 194

Query: 129 ELFD---LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
            + D    +    D    NA++  Y +  + ++A+K+ + MP +++VSWNS++SGY  NG
Sbjct: 195 SIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 254

Query: 186 EMHLASKFFEAMEERDVVSWNLMLD-------GYVELDDLDSAWKFFQKIP-EQNVVSWV 237
             + A + +       VV  +  +        G   +++ D      +KI  +++V+   
Sbjct: 255 YWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNN 314

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER---N 294
            +LS Y +   +++ RR+FD+M +R+ V+WN MI  Y Q G  EE+ +LF+EM  +   +
Sbjct: 315 GLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKPD 374

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYK----NIAAQTAMISGYVQNKRMDEANQIFD 350
            ++ T+++     +  L+  + + D M       +  A   +I+ Y +   +  + ++F 
Sbjct: 375 LLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFS 434

Query: 351 KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM--------------------------- 383
            +   D V WN MI  Y Q G  DEA+ LF+ M                           
Sbjct: 435 GMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLXLG 494

Query: 384 -----------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
                       N +IV  NT++  YA+  +M D++K+FE M K R+ ++WN +I+  + 
Sbjct: 495 KELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENM-KARDIITWNTIIASCVH 553

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
           +E     L++   M  EG   D +T+   L  C+ LAA + G++IH    K G  +D+ V
Sbjct: 554 SEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPV 613

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
           GN LI MY+KCG ++N+  +FK     DV++W +LI+   + G   +A++ F EM   G+
Sbjct: 614 GNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGI 673

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
            PD V F+ ++ ACSH GLV+ GL  F  M + Y IEP +EHYAC++DLLSR+  LD+A 
Sbjct: 674 VPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAE 733

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672
           + +  M +KP++ IWG LL ACRM  + ++ +   E++ EL P  T  Y L+SN++A  G
Sbjct: 734 DFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALG 793

Query: 673 RWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAA 729
           +WD+V  +R S++  G +K PGCSW+E++N+++ F +G     +  E+   L  LA 
Sbjct: 794 KWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEEVNKLLGMLAG 850



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 115/496 (23%), Positives = 228/496 (45%), Gaps = 71/496 (14%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS ++  N  I    +   +++A K+F +M  ++ V++NS+IS Y  NG  N+A +++ +
Sbjct: 206 GSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYR 265

Query: 72  ------MP---------------------------------QRNLVSWNSMIAGYLHNDK 92
                 +P                                 +++++  N +++ Y   + 
Sbjct: 266 FRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNG 325

Query: 93  VKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN--KEDTACWNAMVAGY 150
           + + R +FDKM   D  SW  MI  Y++ G  E++ +LF  + N  K D     +++   
Sbjct: 326 LIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKPDLLTITSILQAC 385

Query: 151 AKIGNYNEAKKLLDAMPSK----NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN 206
             +G+    K + D M +     +  + N +++ Y K G +  + + F  M+ +D VSWN
Sbjct: 386 GHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWN 445

Query: 207 LMLDGYVELDDLDSAWKFFQKIP---EQNVVSWVTMLSGYARNGRMLEARRLFDQMPI-- 261
            M++ Y++    D A K F+ +    + + V++V +LS   + G +   + L   +    
Sbjct: 446 SMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMG 505

Query: 262 --RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLD 319
              N+V  N ++  Y + G++ ++ ++F  M  R+ ++W T+I   V     +   R++ 
Sbjct: 506 FNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMIS 565

Query: 320 QMPYKNIAAQTAMI-------SGYVQNKRMDEANQIFDKIGTH-DVVCWNVMIKGYAQCG 371
           +M  + +    A +       S     ++  E +    K+G   DV   NV+I+ Y++CG
Sbjct: 566 RMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCG 625

Query: 372 RMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALI- 427
            +  +  +F+ M  KD+VTW  +I+      +   AV+ F EM   G   + V++ A+I 
Sbjct: 626 SLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIF 685

Query: 428 ----SGFLQ---NEFH 436
               SG ++   N FH
Sbjct: 686 ACSHSGLVEEGLNYFH 701



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 92/182 (50%)

Query: 394 MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA 453
           +IA YA  R    +  +F       N   WN++I     N    +AL ++    +   + 
Sbjct: 113 LIAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQP 172

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
           D  T    ++ACA L   ++ + IH   +  G+ +DL++GN+LI MY +   +  A  +F
Sbjct: 173 DTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVF 232

Query: 514 KDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVD 573
           ++    DV+SWNSLI+GY  NG   EA++++      GV PD  T   VL AC  +G V+
Sbjct: 233 EEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVE 292

Query: 574 GG 575
            G
Sbjct: 293 EG 294



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/358 (21%), Positives = 151/358 (42%), Gaps = 79/358 (22%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
            N  I    K G +  + ++FS M  K++V++NSMI+ Y +NG  ++A KLF+ M     
Sbjct: 413 SNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD-- 470

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF-DL--L 134
                                      +PD  ++ ++++  T+ G+L   +EL  DL  +
Sbjct: 471 --------------------------VKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKM 504

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
               +    N +V  YAK G   ++ K+ + M +++I++WN++++    + + +L  +  
Sbjct: 505 GFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMI 564

Query: 195 EAME---------------------------------------ERDVVSWNLMLDGYVEL 215
             M                                        E DV   N++++ Y + 
Sbjct: 565 SRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKC 624

Query: 216 DDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP----IRNVVAWNAMI 271
             L ++++ F+ +  ++VV+W  ++S     G   +A R F +M     + + VA+ A+I
Sbjct: 625 GSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAII 684

Query: 272 AAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQMPYK 324
            A    G +EE    F  M +   +      +  ++D   R A LD+A   +  MP K
Sbjct: 685 FACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLK 742


>gi|357114699|ref|XP_003559133.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 640

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/559 (37%), Positives = 311/559 (55%), Gaps = 38/559 (6%)

Query: 177 MLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSW 236
           ML+GY K G +H A + F+ M  R VV+W  M+D Y     +  A + F  +PE++VVSW
Sbjct: 106 MLAGYAKAGRVHRARRLFDGMLTRGVVAWTCMVDAYCRAGRVSEARELFDAMPERSVVSW 165

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
             M+ GYAR G   EAR +FD+MP RNVV+W  M+ AY   G  ++A  LF  MP+RN  
Sbjct: 166 TAMMHGYARAGMPREAREMFDRMPERNVVSWTVMVKAYADGGYFQDAMGLFDRMPQRNSY 225

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHD 356
           SW  +I G  R  ++DEA RL ++MP++N+ + TAM++G  QN R+  A + FD +   D
Sbjct: 226 SWNAVISGSFRAGRVDEAVRLFERMPHRNVVSWTAMVTGLAQNGRVSMAREFFDVMPCKD 285

Query: 357 VVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
           +  WN MI  YA  G M+EA  LF  M  KD+V+WNT+I GYA+    D+A  +F +M +
Sbjct: 286 ITAWNAMITAYANNGEMNEARRLFDSMPAKDLVSWNTVIDGYAKKELKDEASGLFLDMLR 345

Query: 417 RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ 476
              + +   LIS  + +E  ++ +                                   Q
Sbjct: 346 SAASPNSTTLISVLVISESMVEVV-----------------------------------Q 370

Query: 477 IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGN 536
           IH LA   G +++  +GN+L+TMY++ G + +A L FK  +  D I+W S+I  +A +G+
Sbjct: 371 IHGLATTLGLLSETSLGNALLTMYSRIGDLPSAWLAFKRLEEKDAITWTSMIQAFANHGH 430

Query: 537 ATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYA 596
           A+ A++ F +M+  G  P   TF  VLSACSH GLV+ G  +F  +  VY +E  +EHY 
Sbjct: 431 ASYALQAFAQMLEHGKNPSSTTFTAVLSACSHAGLVEEGKSVFRSIRHVYGLERTIEHYT 490

Query: 597 CMIDLLSRAGRLDEAFEMVKGMKIK-PNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEP 655
           C+ID+L RAG + EA ++V  M     +  I  TLLGAC MH+ +   R   E L++ +P
Sbjct: 491 CLIDILGRAGNMREAMDVVNAMPPDICDDAILRTLLGACMMHKEVDAAREVGEVLAKSDP 550

Query: 656 QKTSCYAL-LSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQ 714
             +  Y + L+N+ A  G WDE+  V  +M+GS  +K PG S I V  + H F S D   
Sbjct: 551 SGSGGYYMVLANVLASGGLWDEMADVWKAMKGSNVRKTPGVSQITVDARNHAFFSRDQIH 610

Query: 715 CRTAEICNTL-KTLAAQIR 732
            + AEI   L  TL  +++
Sbjct: 611 PQCAEIYEMLDHTLVPEMK 629



 Score =  239 bits (609), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 128/392 (32%), Positives = 198/392 (50%), Gaps = 38/392 (9%)

Query: 123 ELEKARELFDLLPNKEDTACWNA-MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
           +L +A  L+   P        +A M+AGYAK G  + A++L D M ++ +V+W  M+  Y
Sbjct: 82  DLPRAEALYRAAPEAARGPALDAVMLAGYAKAGRVHRARRLFDGMLTRGVVAWTCMVDAY 141

Query: 182 TKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
            + G +  A + F+AM ER VVSW  M+ GY        A + F ++PE+NVVSW  M+ 
Sbjct: 142 CRAGRVSEARELFDAMPERSVVSWTAMMHGYARAGMPREAREMFDRMPERNVVSWTVMVK 201

Query: 242 GYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTM 301
            YA  G   +A  LFD+MP RN  +WNA+I+   + G+++EA RLF  MP RN VSWT M
Sbjct: 202 AYADGGYFQDAMGLFDRMPQRNSYSWNAVISGSFRAGRVDEAVRLFERMPHRNVVSWTAM 261

Query: 302 IDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWN 361
           + G  +  ++  AR   D MP K+I A  AMI+ Y  N  M+EA ++FD +   D+V WN
Sbjct: 262 VTGLAQNGRVSMAREFFDVMPCKDITAWNAMITAYANNGEMNEARRLFDSMPAKDLVSWN 321

Query: 362 VMIKGYAQCGRMDEAINLFRQMVN------------------------------------ 385
            +I GYA+    DEA  LF  M+                                     
Sbjct: 322 TVIDGYAKKELKDEASGLFLDMLRSAASPNSTTLISVLVISESMVEVVQIHGLATTLGLL 381

Query: 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVL 445
            +    N ++  Y++I  +  A   F+ + + ++ ++W ++I  F  +     AL+ F  
Sbjct: 382 SETSLGNALLTMYSRIGDLPSAWLAFKRL-EEKDAITWTSMIQAFANHGHASYALQAFAQ 440

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQI 477
           M + GK    +T    LSAC+H   ++ G+ +
Sbjct: 441 MLEHGKNPSSTTFTAVLSACSHAGLVEEGKSV 472



 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 129/467 (27%), Positives = 231/467 (49%), Gaps = 37/467 (7%)

Query: 26  GKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIA 85
            K+GRV  A ++F  M  +  V +  M+ AY + GRV++AR+LF+ MP+R++VSW +M+ 
Sbjct: 111 AKAGRVHRARRLFDGMLTRGVVAWTCMVDAYCRAGRVSEARELFDAMPERSVVSWTAMMH 170

Query: 86  GYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNA 145
           GY      +EARE+FD+M   ++ SW +M+  Y   G  + A  LFD +P + ++  WNA
Sbjct: 171 GYARAGMPREAREMFDRMPERNVVSWTVMVKAYADGGYFQDAMGLFDRMPQR-NSYSWNA 229

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW 205
           +++G  + G  +EA +L + MP +N+VSW +M++G  +NG + +A +FF+ M  +D+ +W
Sbjct: 230 VISGSFRAGRVDEAVRLFERMPHRNVVSWTAMVTGLAQNGRVSMAREFFDVMPCKDITAW 289

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
           N M+  Y    +++ A + F  +P +++VSW T++ GYA+     EA  LF  M +R+  
Sbjct: 290 NAMITAYANNGEMNEARRLFDSMPAKDLVSWNTVIDGYAKKELKDEASGLFLDM-LRSAA 348

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           + N+     V          L I           +M++  V+I  L     LL +    N
Sbjct: 349 SPNSTTLISV----------LVIS---------ESMVE-VVQIHGLATTLGLLSETSLGN 388

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV- 384
                A+++ Y +   +  A   F ++   D + W  MI+ +A  G    A+  F QM+ 
Sbjct: 389 -----ALLTMYSRIGDLPSAWLAFKRLEEKDAITWTSMIQAFANHGHASYALQAFAQMLE 443

Query: 385 ---NKDIVTWNTMIAGYAQIRQMDDAVKIFEEM----GKRRNTVSWNALISGFLQNEFHL 437
              N    T+  +++  +    +++   +F  +    G  R    +  LI    +     
Sbjct: 444 HGKNPSSTTFTAVLSACSHAGLVEEGKSVFRSIRHVYGLERTIEHYTCLIDILGRAGNMR 503

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
           +A+ +   M  +    D + L   L AC     +   R++  +  KS
Sbjct: 504 EAMDVVNAMPPD--ICDDAILRTLLGACMMHKEVDAAREVGEVLAKS 548



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 196/388 (50%), Gaps = 37/388 (9%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL 88
           G  ++A+ +F +M Q+N+ ++N++IS   + GRV++A +LFE+MP RN+VSW +M+ G  
Sbjct: 207 GYFQDAMGLFDRMPQRNSYSWNAVISGSFRAGRVDEAVRLFERMPHRNVVSWTAMVTGLA 266

Query: 89  HNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVA 148
            N +V  ARE FD M   D+ +W  MIT Y   GE+ +AR LFD +P K D   WN ++ 
Sbjct: 267 QNGRVSMAREFFDVMPCKDITAWNAMITAYANNGEMNEARRLFDSMPAK-DLVSWNTVID 325

Query: 149 GYAKIGNYNEAKKL-LDAMPSKNIVSWNSMLSGYTKNGEM------HLASKFFEAMEERD 201
           GYAK    +EA  L LD + S    +  +++S    +  M      H  +     + E  
Sbjct: 326 GYAKKELKDEASGLFLDMLRSAASPNSTTLISVLVISESMVEVVQIHGLATTLGLLSETS 385

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM-- 259
           +   N +L  Y  + DL SAW  F+++ E++ ++W +M+  +A +G    A + F QM  
Sbjct: 386 L--GNALLTMYSRIGDLPSAWLAFKRLEEKDAITWTSMIQAFANHGHASYALQAFAQMLE 443

Query: 260 ----PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-----ERNPVSWTTMIDGYVRIAK 310
               P  +   + A+++A    G +EE   +F  +      ER    +T +ID   R   
Sbjct: 444 HGKNP--SSTTFTAVLSACSHAGLVEEGKSVFRSIRHVYGLERTIEHYTCLIDILGRAGN 501

Query: 311 LDEARRLLDQMPYK--NIAAQTAMISGYVQNKRMDEANQIFDKIGTHD--------VVCW 360
           + EA  +++ MP    + A    ++   + +K +D A ++ + +   D        +V  
Sbjct: 502 MREAMDVVNAMPPDICDDAILRTLLGACMMHKEVDAAREVGEVLAKSDPSGSGGYYMVLA 561

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDI 388
           NV+  G    G  DE  ++++ M   ++
Sbjct: 562 NVLASG----GLWDEMADVWKAMKGSNV 585


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 229/753 (30%), Positives = 410/753 (54%), Gaps = 63/753 (8%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           N +++ Y+K  R   ARKL ++  + ++VSW+S+++GY+ N  V+EA  +F++M     +
Sbjct: 20  NHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGVK 79

Query: 106 PDLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNEAKKL 162
            + F++  ++   + K +L   R++  +      + D    N +V  YAK G  +++++L
Sbjct: 80  CNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRL 139

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV----SWNLMLDGYVELDDL 218
              +  +N+VSWN++ S Y ++     A   F+ M    ++    S +++L+    L + 
Sbjct: 140 FGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEG 199

Query: 219 DSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
           D   K    + +  +     S   ++  Y++ G +  A  +F  +   +VV+WNA+IA  
Sbjct: 200 DLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGC 259

Query: 275 VQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARRLLDQM----PYKNI 326
           V     + A  L  EM       N  + ++ +     +   +  R+L   +     + ++
Sbjct: 260 VLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDL 319

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
            A   ++  Y + + MD+A + +D +   D++ WN +I GY+QCG   +A++LF +M ++
Sbjct: 320 FAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSE 379

Query: 387 DI---------------------------------------VTWNTMIAGYAQIRQMDDA 407
           DI                                          N+++  Y +   +D+A
Sbjct: 380 DIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEA 439

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
            KIFEE     + V++ ++I+ + Q     +ALK+++ M     K D    +  L+ACA+
Sbjct: 440 SKIFEER-TWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACAN 498

Query: 468 LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSL 527
           L+A + G+Q+H  AIK G++ D+F  NSL+ MYAKCG I++A+  F +     ++SW+++
Sbjct: 499 LSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAM 558

Query: 528 IAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYA 587
           I GYA +G+  EA++LF +M+ +GV P+ +T + VL AC+H GLV+ G + FE M  ++ 
Sbjct: 559 IGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFG 618

Query: 588 IEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAV 647
           I+P  EHYACMIDLL R+G+L+EA E+V  +  + +  +WG LLGA R+H+NI+LG+ A 
Sbjct: 619 IKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAA 678

Query: 648 EKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTF 707
           + L +LEP+K+  + LL+N++A AG W+ V KVR  M+ S  +K+PG SWIE+K++++TF
Sbjct: 679 KMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTF 738

Query: 708 LSGDPKQCRTAEICNTLKTLAAQIRNTPLAVII 740
           + GD    R+ EI   L  L   +     + I+
Sbjct: 739 IVGDRSHSRSDEIYAKLDQLGDLLSKAGYSSIV 771



 Score =  202 bits (513), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 157/575 (27%), Positives = 262/575 (45%), Gaps = 92/575 (16%)

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           D +  N +V  Y+K   +  A+KL+D     ++VSW+S+LSGY +NG +  A   F  M 
Sbjct: 15  DPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMC 74

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV--------TMLSGYARNGRML 250
              V          ++   +       +K+    VV+          T++  YA+ G + 
Sbjct: 75  LLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLD 134

Query: 251 EARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYV 306
           ++RRLF  +  RNVV+WNA+ + YVQ     EA  LF EM       N  S + +++   
Sbjct: 135 DSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACA 194

Query: 307 RIAKLDEARRL----------LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHD 356
            + + D  R++          LDQ       +  A++  Y +   ++ A  +F  I   D
Sbjct: 195 GLQEGDLGRKIHGLMLKMGLDLDQF------SANALVDMYSKAGEIEGAVAVFQDIAHPD 248

Query: 357 VVCWNVMIKGYAQCGRMDEAINLFRQM--------------------------------- 383
           VV WN +I G       D A+ L  +M                                 
Sbjct: 249 VVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHS 308

Query: 384 ------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHL 437
                  + D+     ++  Y++   MDDA + ++ M K ++ ++WNALISG+ Q   HL
Sbjct: 309 SLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPK-KDIIAWNALISGYSQCGDHL 367

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
           DA+ +F  M  E    + +TL+  L + A L A+++ +QIH ++IKSG  +D +V NSL+
Sbjct: 368 DAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLL 427

Query: 498 TMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
             Y KC  I  A  +F++    D++++ S+I  Y+  G+  EA+KL+ +M    + PDP 
Sbjct: 428 DTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPF 487

Query: 558 TFIGVLSACSHVGLVDGGLKL------FECMTEVYAIEPLVEHYACMIDLLSRAGRL--- 608
               +L+AC+++   + G +L      F  M +++A   LV  YA       + G +   
Sbjct: 488 ICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYA-------KCGSIEDA 540

Query: 609 DEAFEMVKGMKIKPNAGI--WGTLLGACRMHQNIK 641
           D AF  +      PN GI  W  ++G    H + K
Sbjct: 541 DRAFSEI------PNRGIVSWSAMIGGYAQHGHGK 569



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 173/327 (52%), Gaps = 10/327 (3%)

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
           R+P     ++  Y +  +   AR+L+D+    ++ + ++++SGYVQN  ++EA  +F+++
Sbjct: 14  RDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEM 73

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTW--------NTMIAGYAQIRQM 404
               V C         +   M   +N+ R++    +VT         NT++  YA+   +
Sbjct: 74  CLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLL 133

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSA 464
           DD+ ++F  +   RN VSWNAL S ++Q+E   +A+ +F  M + G   +  +++  L+A
Sbjct: 134 DDSRRLFGGI-VERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNA 192

Query: 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
           CA L    LGR+IH L +K G   D F  N+L+ MY+K G I+ A  +F+D    DV+SW
Sbjct: 193 CAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSW 252

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           N++IAG  ++     A+ L +EM   G  P+  T    L AC+ +G  + G +L   + +
Sbjct: 253 NAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIK 312

Query: 585 VYAIEPLVEHYACMIDLLSRAGRLDEA 611
           + A   L      ++D+ S+   +D+A
Sbjct: 313 MDAHSDLFAAVG-LVDMYSKCEMMDDA 338



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 129/505 (25%), Positives = 235/505 (46%), Gaps = 66/505 (13%)

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARN 246
           M L +   +    RD    N ++  Y +      A K   +  E +VVSW ++LSGY +N
Sbjct: 1   MELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN 60

Query: 247 GRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARL----FIEMPERNPVSW 298
           G + EA  +F++M +  V      + +++ A   +  +    ++     +   E +    
Sbjct: 61  GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVA 120

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV 358
            T++  Y +   LD++RRL   +  +N+ +  A+ S YVQ++   EA  +F ++    ++
Sbjct: 121 NTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIM 180

Query: 359 ----CWNVMIKGYA--QCGRMDEAIN--LFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKI 410
                 ++++   A  Q G +   I+  + +  ++ D  + N ++  Y++  +++ AV +
Sbjct: 181 PNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAV 240

Query: 411 FEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAA 470
           F+++    + VSWNA+I+G + ++ +  AL +   M   G + +  TL+ AL ACA +  
Sbjct: 241 FQDIA-HPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGF 299

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
            +LGRQ+H   IK    +DLF    L+ MY+KC  + +A   +      D+I+WN+LI+G
Sbjct: 300 KELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISG 359

Query: 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA------------------------- 565
           Y+  G+  +A+ LF +M  E +  +  T   VL +                         
Sbjct: 360 YSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSD 419

Query: 566 -------------CSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
                        C+H   +D   K+FE  T     E LV  Y  MI   S+ G  +EA 
Sbjct: 420 FYVINSLLDTYGKCNH---IDEASKIFEERT----WEDLVA-YTSMITAYSQYGDGEEAL 471

Query: 613 EMVKGMK---IKPNAGIWGTLLGAC 634
           ++   M+   IKP+  I  +LL AC
Sbjct: 472 KLYLQMQDADIKPDPFICSSLLNAC 496



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 132/588 (22%), Positives = 252/588 (42%), Gaps = 102/588 (17%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F  N  +    K G ++++ ++F  + ++N V++N++ S Y ++    +A  LF++M + 
Sbjct: 118 FVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRS 177

Query: 76  NLVSWNSMI-------AGYLHNDKVKEARELFDKM-FRPDLFSWALMITCYTRKGELEKA 127
            ++     I       AG    D  ++   L  KM    D FS   ++  Y++ GE+E A
Sbjct: 178 GIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGA 237

Query: 128 RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSMLSGYTK 183
             +F  + +  D   WNA++AG       + A  LLD M       N+ + +S L     
Sbjct: 238 VAVFQDIAHP-DVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAA 296

Query: 184 NGEMHLASKFFEAM----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTM 239
            G   L  +   ++       D+ +   ++D Y + + +D A + +  +P++++++W  +
Sbjct: 297 MGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNAL 356

Query: 240 LSGYARNGRMLEARRLFDQM--------------PIRNVVAW------------------ 267
           +SGY++ G  L+A  LF +M               +++V +                   
Sbjct: 357 ISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGI 416

Query: 268 -------NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
                  N+++  Y +   I+EA+++F E    + V++T+MI  Y +    +EA +L  Q
Sbjct: 417 YSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQ 476

Query: 321 M--------PY--KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC 370
           M        P+   ++    A +S Y Q K++      F  +   D+   N ++  YA+C
Sbjct: 477 MQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMC--DIFASNSLVNMYAKC 534

Query: 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
           G +++A   F ++ N+ IV+W+ MI GYAQ              GK              
Sbjct: 535 GSIEDADRAFSEIPNRGIVSWSAMIGGYAQ-----------HGHGK-------------- 569

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ-IHHLAIKSGYVND 489
                  +AL++F  M ++G   +H TL   L AC H   +  G+Q    + +  G    
Sbjct: 570 -------EALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPT 622

Query: 490 LFVGNSLITMYAKCGRIQNA-ELLFKDADPVDVISWNSLIAGYAINGN 536
                 +I +  + G++  A EL+       D   W +L+    I+ N
Sbjct: 623 QEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKN 670



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 86/170 (50%), Gaps = 15/170 (8%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F  N  +    K G +E+A + FS++  +  V++++MI  YA++G   +A +LF QM +
Sbjct: 521 IFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLR 580

Query: 75  R----NLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELE 125
                N ++  S++    H   V E ++ F+KM      +P    +A MI    R G+L 
Sbjct: 581 DGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLN 640

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNE-----AKKLLDAMPSKN 170
           +A EL + +P + D   W A++ G A+I    E     AK L D  P K+
Sbjct: 641 EAVELVNSIPFEADGFVWGALL-GAARIHKNIELGQKAAKMLFDLEPEKS 689


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  394 bits (1012), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 228/643 (35%), Positives = 367/643 (57%), Gaps = 58/643 (9%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N ++  Y+K G    A+KL D MP +   SWN++LS Y K G+M  + +FF+ + +RD V
Sbjct: 53  NNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSV 112

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKI------PEQ----NVVSWV---------------- 237
           SW  M+ GY  +     A +   ++      P Q    NV++ V                
Sbjct: 113 SWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFI 172

Query: 238 -------------TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA 284
                        ++L+ YA+ G  + A+ +FD+M ++++ +WNAMIA ++Q GQ++ A 
Sbjct: 173 VKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAM 232

Query: 285 RLFIEMPERNPVSWTTMIDGYVR----IAKLDEARRLL-DQMPYKNIAAQTAMISGYVQN 339
             F +M ER+ V+W +MI GY +    +  LD   ++L D M   +     +++S     
Sbjct: 233 AQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANL 292

Query: 340 KRMDEANQIFDKIGT--HDV--VCWNVMIKGYAQCGRMDEAINLFRQMVNKD--IVTWNT 393
           +++    QI   I T   D+  +  N +I  Y++CG ++ A  L  Q   KD  I  +  
Sbjct: 293 EKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTA 352

Query: 394 MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA 453
           ++ GY ++  M++A  IF+ + K R+ V+W A+I G+ Q+  + +A+ +F  M  E ++ 
Sbjct: 353 LLDGYIKLGDMNEAKNIFDSL-KDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRP 411

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
           +  TLA  LS  + LA+L  G+QIH  A+KSG +  + V N+LITMYAK G I +A   F
Sbjct: 412 NSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAF 471

Query: 514 KDADPV----DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
              D +    D +SW S+I   A +G+A EA++LFE M+MEG+ PD +T++GV SAC+H 
Sbjct: 472 ---DLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHA 528

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629
           GLV+ G + F+ M +V  I P + HYACM+DL  RAG L EA E ++ M I+P+   WG+
Sbjct: 529 GLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGS 588

Query: 630 LLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689
           LL ACR+++NI LG++A E+L  LEP+ +  Y+ L+N+++  G+W+E  K+R SM+    
Sbjct: 589 LLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRV 648

Query: 690 QKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +K+ G SWIEVK+++H F   D    +  EI  T+K +  +I+
Sbjct: 649 KKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIYITMKKIWDEIK 691



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 176/699 (25%), Positives = 316/699 (45%), Gaps = 87/699 (12%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V+  N  +    K+G    A K+F +M  +   ++N+++SAYAK G ++ + + F+++PQ
Sbjct: 49  VYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQ 108

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAREL 130
           R+ VSW +MI GY +  +  +A  +  +M R    P  F+   ++        LE  +++
Sbjct: 109 RDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKV 168

Query: 131 FDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
              +     + + +  N+++  YAK G+   AK + D M  K+I SWN+M++ + + G+M
Sbjct: 169 HSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQM 228

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSG 242
            LA   FE M ERD+V+WN M+ GY +      A   F K+   +++S       ++LS 
Sbjct: 229 DLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSA 288

Query: 243 YARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-- 296
            A   ++    ++   +         +  NA+I+ Y + G +E A RL  +   ++    
Sbjct: 289 CANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIE 348

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK-IGTH 355
            +T ++DGY+++  ++EA+ + D +  +++ A TAMI GY Q+    EA  +F   +G  
Sbjct: 349 GFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEE 408

Query: 356 ---DVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVTWNTMIAGYAQIRQMDDAV 408
              +      M+   +    +     +    V       +   N +I  YA+   +  A 
Sbjct: 409 QRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSAS 468

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
           + F+ +   R+TVSW ++I    Q+    +AL++F  M  EG + DH T     SAC H 
Sbjct: 469 RAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHA 528

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWNS 526
             +  GRQ         Y +                       + KD D +   +  +  
Sbjct: 529 GLVNQGRQ---------YFD-----------------------MMKDVDKIIPTLSHYAC 556

Query: 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVY 586
           ++  +   G   EA +  E+M +E   PD VT+  +LSAC     +D G    E    + 
Sbjct: 557 MVDLFGRAGLLQEAQEFIEKMPIE---PDVVTWGSLLSACRVYKNIDLGKVAAE---RLL 610

Query: 587 AIEPLVE-HYACMIDLLSRAGRLDEAFEMVKGMK---IKPNAGI-WGTLLGACRMHQNIK 641
            +EP     Y+ + +L S  G+ +EA ++ K MK   +K   G  W        +    K
Sbjct: 611 LLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSW--------IEVKHK 662

Query: 642 LGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKV 680
           +    VE    + PQK   Y  +  +      WDE++K+
Sbjct: 663 VHAFGVE--DGIHPQKNEIYITMKKI------WDEIKKM 693



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 143/546 (26%), Positives = 232/546 (42%), Gaps = 113/546 (20%)

Query: 246 NGRM---LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMI 302
           NGR    L   R+     + +V   N ++  Y + G    A +LF EMP R   SW T++
Sbjct: 28  NGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVL 87

Query: 303 DGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGY-----------VQNKRMDEA------ 345
             Y +   +D +    D++P ++  + T MI GY           +  + M E       
Sbjct: 88  SAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQF 147

Query: 346 ---------------------NQIFDKIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQM 383
                                +    K+G   +V   N ++  YA+CG    A  +F +M
Sbjct: 148 TLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRM 207

Query: 384 VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
           V KDI +WN MIA + Q+ QMD A+  FE+M + R+ V+WN++ISG+ Q  + L AL +F
Sbjct: 208 VVKDISSWNAMIALHMQVGQMDLAMAQFEQMAE-RDIVTWNSMISGYNQRGYDLRALDMF 266

Query: 444 VLMTQEGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
             M ++     D  TLA  LSACA+L  L +G QIH   + +G+     V N+LI+MY++
Sbjct: 267 SKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSR 326

Query: 503 CGRIQNAELL---------------------------------FKDADPVDVISWNSLIA 529
           CG ++ A  L                                 F      DV++W ++I 
Sbjct: 327 CGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIV 386

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMT---EVY 586
           GY  +G   EAI LF  MV E   P+  T   +LS  S +  +  G ++        E+Y
Sbjct: 387 GYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIY 446

Query: 587 AIE---PLVEHYA-------------------------CMIDLLSRAGRLDEAFEMVKGM 618
           ++     L+  YA                          MI  L++ G  +EA E+ + M
Sbjct: 447 SVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETM 506

Query: 619 ---KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEP--QKTSCYALLSNMHAEAGR 673
               ++P+   +  +  AC     +  GR   + + +++      S YA + ++   AG 
Sbjct: 507 LMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGL 566

Query: 674 WDEVEK 679
             E ++
Sbjct: 567 LQEAQE 572


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  394 bits (1012), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 234/732 (31%), Positives = 396/732 (54%), Gaps = 67/732 (9%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
           ++ +  N +I  YAK G V  AR++FEQ+  R+ VSW +M++GY  N   +EA  L+ +M
Sbjct: 75  EDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQM 134

Query: 104 ----FRPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNY 156
                 P  +  + +++  T+    E+ R +   +  +    +T   NA++A Y + G+ 
Sbjct: 135 HCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSL 194

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGY 212
           + A+++   MP  + V++N+++S + + G    A + FE M       D V+   +L   
Sbjct: 195 SLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAAC 254

Query: 213 VELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN 268
             + DL+   +    + +     + +   ++L  Y + G ++EA  +F      NVV WN
Sbjct: 255 ASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWN 314

Query: 269 AMIAAYVQRGQIEEAARLFIEMPERN--PVSWT--------------------------- 299
            M+ AY Q   + ++  LF +M      P  +T                           
Sbjct: 315 LMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKT 374

Query: 300 ----------TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF 349
                      +ID Y +   LD+ARR+L+ +  K++ + T+MI+GYVQ++   EA + F
Sbjct: 375 GFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETF 434

Query: 350 ----------DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYA 399
                     D IG    +     IK   Q  ++   +  +    + D+  WN ++  YA
Sbjct: 435 KDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRV--YVSGYSADVSIWNALVNLYA 492

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
           +  +  +A  +FE + + ++ ++WN ++SGF Q+  + +AL++F+ M Q G K +  T  
Sbjct: 493 RCGRSKEAFSLFEAI-EHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFV 551

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
            ++SA A+LA ++ G+QIH   IK+G  ++  V N+LI++Y KCG I++A++ F +    
Sbjct: 552 SSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSER 611

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
           + +SWN++I   + +G   EA+ LF++M  EG+ P+ VTFIGVL+ACSHVGLV+ GL  F
Sbjct: 612 NHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYF 671

Query: 580 ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
           + M+  + I P  +HYAC++D+L RAG+LD A + V+ M +  NA +W TLL ACR+H+N
Sbjct: 672 KSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKN 731

Query: 640 IKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
           I++G +A + L ELEP  ++ Y LLSN +A  G+W   + VR  M+  G +K+PG SWIE
Sbjct: 732 IEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIE 791

Query: 700 VKNQIHTFLSGD 711
           VKN +H F  GD
Sbjct: 792 VKNVVHAFFVGD 803



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 134/255 (52%), Gaps = 13/255 (5%)

Query: 384 VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
           + +D +  N +I  YA+   +  A ++FE++  R N VSW A++SG+ +N    +A+ ++
Sbjct: 73  LGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDN-VSWVAMLSGYARNGLGEEAVGLY 131

Query: 444 VLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
             M   G       L+  LSAC   A  + GR +H    K G  ++  VGN+LI +Y + 
Sbjct: 132 HQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRF 191

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
           G +  AE +F +    D +++N+LI+ +A  GN   A+++FEEM + G  PD VT   +L
Sbjct: 192 GSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLL 251

Query: 564 SACSHVGLVDGGLKLFEC-----MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
           +AC+ +G ++ G +L        M+  Y IE        ++DL  + G + EA E+ K  
Sbjct: 252 AACASIGDLNKGKQLHSYLLKAGMSPDYIIE------GSLLDLYVKCGVIVEALEIFKSG 305

Query: 619 KIKPNAGIWGTLLGA 633
             + N  +W  +L A
Sbjct: 306 D-RTNVVLWNLMLVA 319



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 78/160 (48%), Gaps = 1/160 (0%)

Query: 417 RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC-AHLAALQLGR 475
           RR   S N  ++GFL +E     L +F    ++ +       ACAL  C   +    L  
Sbjct: 3   RRAAASLNKSLTGFLAHEDPEKLLSLFAAKVRQCRGLGSVDFACALRECRGSVKHWPLVP 62

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
            IH  AI  G   D   GN LI +YAK G +Q A  +F+     D +SW ++++GYA NG
Sbjct: 63  VIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNG 122

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
              EA+ L+ +M   GV P P     VLSAC+   L + G
Sbjct: 123 LGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQG 162


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 242/785 (30%), Positives = 404/785 (51%), Gaps = 73/785 (9%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  N  +    K   +  A  +F +M Q++ +++N+MI  YA  G +  A+ LF+ MP+
Sbjct: 73  VFVSNCLLQFYCKCLNLNYAFNVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPE 132

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKAREL 130
           R++VSWNSM++ YL N   +++ E+F KM     + D  ++A+++   T   +     ++
Sbjct: 133 RDVVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQV 192

Query: 131 FDL---LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
             L   +    D     A+V  Y+     + A  +   MP +N V W+++++GY +N   
Sbjct: 193 HCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRF 252

Query: 188 HLASKFFEAMEERDV-VSWNLMLDGY--------VELDDLDSAWKFFQKIPEQNVVSWVT 238
               K ++ M +  + VS       +         EL     A+         N+V   T
Sbjct: 253 TEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTAT 312

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF----------I 288
            L  YA+  RM++AR++F+  P     + NA+I  Y ++ Q+ EA  +F           
Sbjct: 313 -LDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFD 371

Query: 289 EMPERNPVSWTTMIDGYVRIAKLD--EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEAN 346
           E+     ++  + I GY+   +L     +  LD     NI     ++  Y +   + EA 
Sbjct: 372 EISLSGALTACSAIKGYLEGIQLHGLAVKCGLD----FNICVANTILDMYAKCGALMEAC 427

Query: 347 QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF----RQMVNKDIVTWNTMI---AG-- 397
            IFD +   D V WN +I  + Q   ++E + LF    R  +  D  T+ +++   AG  
Sbjct: 428 LIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKK 487

Query: 398 ------------------------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
                                         Y +   + +A KI E + + R TVSWN++I
Sbjct: 488 ALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERL-EERTTVSWNSII 546

Query: 428 SGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV 487
           SGF   +   +AL  F  M Q G   D+ T A  L  CA+LA ++LG+QIH   +K    
Sbjct: 547 SGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQILKLQLH 606

Query: 488 NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
           +D+++ ++++ MY+KCG +Q++ ++F+ A   D ++W+++I  YA +G   +AIKLFEEM
Sbjct: 607 SDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLFEEM 666

Query: 548 VMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGR 607
            ++ V P+   FI VL AC+H+G VD GL  F  M   Y ++P +EHY+CM+DLL R+G+
Sbjct: 667 QLQNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGRSGQ 726

Query: 608 LDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNM 667
           ++EA E+++ M  + +  IW TLLG CR+  N+++   A   L +L+PQ +S Y LLSN+
Sbjct: 727 VNEALELIESMPFEADDVIWRTLLGICRLQGNVEVAEKAANSLLQLDPQDSSAYVLLSNV 786

Query: 668 HAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
           +A AG W EV K+R  M+    +K+PGCSWI+V++++H FL GD    R+ EI      L
Sbjct: 787 YAIAGMWGEVAKIRSFMKNYKLKKEPGCSWIQVRDEVHAFLVGDKAHPRSEEIYQQTHLL 846

Query: 728 AAQIR 732
             +++
Sbjct: 847 VDEMK 851



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 123/429 (28%), Positives = 220/429 (51%), Gaps = 28/429 (6%)

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
           +  V   N ++  Y +   +  A  +F +MP+R+ +SW TMI GY  +  ++ A+ L D 
Sbjct: 70  VPTVFVSNCLLQFYCKCLNLNYAFNVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDS 129

Query: 321 MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG----THDVVCWNVMIKGYAQCGRMDEA 376
           MP +++ +  +M+S Y+QN    ++ +IF K+      HD   + V++K  A  G  D  
Sbjct: 130 MPERDVVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLK--ACTGIEDYG 187

Query: 377 INL------FRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
           + L       +   + D+VT   ++  Y+  +++D A  IF EM   RN+V W+A+I+G+
Sbjct: 188 LGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEM-PERNSVCWSAVIAGY 246

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
           ++N+   + LK++ +M  EG     +T A A  +CA L+A +LG Q+H  A+K+ +  D 
Sbjct: 247 VRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDN 306

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME 550
            VG + + MYAKC R+ +A  +F         S N+LI GYA      EA+++F  +   
Sbjct: 307 IVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKS 366

Query: 551 GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYAC----MIDLLSRAG 606
            +  D ++  G L+ACS +     G++L        A++  ++   C    ++D+ ++ G
Sbjct: 367 YLDFDEISLSGALTACSAIKGYLEGIQL-----HGLAVKCGLDFNICVANTILDMYAKCG 421

Query: 607 RLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIK--LGRIAVEKLSELEPQKTSCYALL 664
            L EA  +   M+IK +A  W  ++ A   +++++  L        S +EP     Y   
Sbjct: 422 ALMEACLIFDDMEIK-DAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDD---YTFG 477

Query: 665 SNMHAEAGR 673
           S + A AG+
Sbjct: 478 SVVKACAGK 486



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 99/229 (43%), Gaps = 39/229 (17%)

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
           T +     C++L A+  G+Q H     +G+V  +FV N L+  Y KC  +  A  +F   
Sbjct: 40  TFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKM 99

Query: 517 DPVDVISWNSLIAGYA-------------------------------INGNATEAIKLFE 545
              DVISWN++I GYA                                NG   ++I++F 
Sbjct: 100 PQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFT 159

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL-FECMTEVYAIEPLVEHYACMIDLLSR 604
           +M +  +  D  TF  VL AC+  G+ D GL L   C+      +  V     ++D+ S 
Sbjct: 160 KMRLLEIQHDYATFAVVLKACT--GIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYST 217

Query: 605 AGRLDEAFEMVKGMKIKPNAGIWGTLLGAC----RMHQNIKLGRIAVEK 649
             +LD AF +   M  + N+  W  ++       R  + +KL ++ +++
Sbjct: 218 CKKLDHAFNIFCEMP-ERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDE 265



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 80/163 (49%), Gaps = 9/163 (5%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V+  +  +    K G ++++  +F +  +++ VT+++MI AYA +G   DA KLFE+M
Sbjct: 607 SDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLFEEM 666

Query: 73  PQRNLVSWNSMIAGYL----HNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGE 123
             +N+   +++    L    H   V +    F +M       P +  ++ M+    R G+
Sbjct: 667 QLQNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGRSGQ 726

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           + +A EL + +P + D   W  ++      GN   A+K  +++
Sbjct: 727 VNEALELIESMPFEADDVIWRTLLGICRLQGNVEVAEKAANSL 769


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/526 (38%), Positives = 302/526 (57%), Gaps = 41/526 (7%)

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP---------------- 291
           RM  AR+LFDQ+P  N+  WN+M   Y Q     E   LF +M                 
Sbjct: 85  RMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLK 144

Query: 292 -----------------------ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA 328
                                    NP   TT+ID Y     + +A ++  +M  +N+ A
Sbjct: 145 SCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVA 204

Query: 329 QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
            T+MI+GY+ +  +  A ++FD     DVV WN+M+ GY + G M EA  LF +M N+D+
Sbjct: 205 WTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDV 264

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
           + WNT++ GYA    ++    +FEEM   RN  SWNALI G+  N    + L  F  M  
Sbjct: 265 MFWNTVLKGYATNGNVEALEGLFEEM-PERNIFSWNALIGGYAHNGLFFEVLGSFKRMLS 323

Query: 449 EGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
           E     + +TL   LSACA L AL LG+ +H  A  SG   +++VGN+L+ MYAKCG I+
Sbjct: 324 ESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIE 383

Query: 508 NAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
           NA  +F+  D  D+ISWN+LI G A++    +A+ LF +M   G  PD +TFIG+L AC+
Sbjct: 384 NAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACT 443

Query: 568 HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIW 627
           H+GLV+ G   F+ M + Y I P +EHY CM+D+L+RAGRL++A   V+ M ++ +  IW
Sbjct: 444 HMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIW 503

Query: 628 GTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGS 687
             LLGACR+++N++L  +A+++L ELEP+  + Y +LSN++ +AGRW++V +++V+M  +
Sbjct: 504 AGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDT 563

Query: 688 GAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           G +K PGCS IEV + +  F S D +  +  EI   L+ L   +R+
Sbjct: 564 GFKKLPGCSLIEVNDAVVEFYSLDERHPQIEEIYGVLRGLVKVLRS 609



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 163/635 (25%), Positives = 281/635 (44%), Gaps = 108/635 (17%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKE 95
           +I +   Q N      +++  A   R+  AR+LF+Q+P  N+  WNSM  GY  ++  +E
Sbjct: 60  QIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYRE 119

Query: 96  ARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVA 148
              LF +M     RP+ F++ +++    +   L +  ++   L     + +      ++ 
Sbjct: 120 VVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLID 179

Query: 149 GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLM 208
            Y+  G   +A K+   M  +N+V+W SM++GY  + ++  A + F+   ERDVV WN+M
Sbjct: 180 MYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIM 239

Query: 209 LDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN 268
           + GY+E  D+  A K F ++P ++V+ W T+L GYA NG +     LF++MP RN+ +WN
Sbjct: 240 VSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWN 299

Query: 269 AMIAAYVQRGQIEEAARLFIEMPER-----NPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
           A+I  Y   G   E    F  M        N  +  T++    R+  LD  +       +
Sbjct: 300 ALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGK-------W 352

Query: 324 KNIAAQTAMISG--YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
            ++ A+++ + G  YV N  MD                       YA+CG ++ AI++FR
Sbjct: 353 VHVYAESSGLKGNVYVGNALMDM----------------------YAKCGIIENAISVFR 390

Query: 382 QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALK 441
            M  KD+++WNT+I G A   +  D                                AL 
Sbjct: 391 GMDTKDLISWNTLIGGLAMHSRGAD--------------------------------ALN 418

Query: 442 IFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV------GNS 495
           +F  M   G+K D  T    L AC H+  ++ G      A      +D  +         
Sbjct: 419 LFFQMKNAGQKPDGITFIGILCACTHMGLVEDG-----FAYFQSMADDYLIMPQIEHYGC 473

Query: 496 LITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA 553
           ++ M A+ GR++ A + F    PV  D + W  L+    I  N  E  +L  + ++E   
Sbjct: 474 MVDMLARAGRLEQA-MAFVRKMPVEADGVIWAGLLGACRIYKN-VELAELALQRLIELEP 531

Query: 554 PDPVTFIGVLS------------ACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601
            +P  ++ +LS            A   V + D G K     + +   + +VE Y+    L
Sbjct: 532 KNPANYV-MLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYS----L 586

Query: 602 LSRAGRLDEAFEMVKGM-KIKPNAGIWGTLLGACR 635
             R  +++E + +++G+ K+  + G    L GA R
Sbjct: 587 DERHPQIEEIYGVLRGLVKVLRSFGYVPDLTGAGR 621



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 115/437 (26%), Positives = 194/437 (44%), Gaps = 63/437 (14%)

Query: 20  KKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP----QR 75
           K +T      R+  A ++F Q+   N   +NSM   YA++    +   LF QM     + 
Sbjct: 75  KLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRP 134

Query: 76  NLVSW----------NSMIAG-------------------------YLHNDKVKEARELF 100
           N  ++          N++I G                         Y     V +A ++F
Sbjct: 135 NCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIF 194

Query: 101 DKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
            +MF  ++ +W  MI  Y    +L  AR LFDL P + D   WN MV+GY + G+  EA+
Sbjct: 195 CEMFERNVVAWTSMINGYILSADLVSARRLFDLAPER-DVVLWNIMVSGYIEGGDMVEAR 253

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
           KL   MP+++++ WN++L GY  NG +      FE M ER++ SWN ++ GY        
Sbjct: 254 KLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFE 313

Query: 221 AWKFFQKIPEQ-----NVVSWVTMLSGYARNGRMLEARRLF---DQMPIR-NVVAWNAMI 271
               F+++  +     N  + VT+LS  AR G +   + +    +   ++ NV   NA++
Sbjct: 314 VLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALM 373

Query: 272 AAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
             Y + G IE A  +F  M  ++ +SW T+I G    ++  +A  L  QM  KN   +  
Sbjct: 374 DMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQM--KNAGQKPD 431

Query: 332 MIS-----------GYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF 380
            I+           G V++      +   D +    +  +  M+   A+ GR+++A+   
Sbjct: 432 GITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFV 491

Query: 381 RQM-VNKDIVTWNTMIA 396
           R+M V  D V W  ++ 
Sbjct: 492 RKMPVEADGVIWAGLLG 508



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 102/218 (46%), Gaps = 12/218 (5%)

Query: 468 LAALQLGRQIHHLA---IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
           L + +  +Q+H +    I +G+  + ++   L+T+ A   R+  A  LF      ++  W
Sbjct: 45  LQSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALW 104

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           NS+  GYA + +  E + LF +M    + P+  TF  VL +C  +  +  G ++   + +
Sbjct: 105 NSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIK 164

Query: 585 V-YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLG 643
             +   P V     +ID+ S  G + +A+++   M  + N   W +++    +  ++   
Sbjct: 165 CGFRGNPFVG--TTLIDMYSAGGTVGDAYKIFCEM-FERNVVAWTSMINGYILSADL--- 218

Query: 644 RIAVEKLSELEPQK-TSCYALLSNMHAEAGRWDEVEKV 680
            ++  +L +L P++    + ++ + + E G   E  K+
Sbjct: 219 -VSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKL 255


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/463 (41%), Positives = 292/463 (63%), Gaps = 6/463 (1%)

Query: 270 MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
           MI+ Y++  + + A  LF +MPER+  SW  M+ GYVR   L  AR L ++MP ++I + 
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSW 60

Query: 330 TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIV 389
            AM+SGY QN  +DEA +IF K+   + + WN ++  Y Q GR+++A  LF   ++  +V
Sbjct: 61  NAMLSGYAQNGFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLFESKMDWTLV 120

Query: 390 TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
           +WN ++ G+ + R+      +F+ M  +R+++SW+A+I+G+ QN    +AL  FV M ++
Sbjct: 121 SWNCLMGGFVRKRR-----NLFDNM-PQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRD 174

Query: 450 GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA 509
            ++ + S+  CALS C+++AAL+LGRQ+H   +K+GY    +VGN+L+ MY KCG I  A
Sbjct: 175 CERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEA 234

Query: 510 ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
              F++    DV+SWN++I GYA +G   EA+ +FE M   G+ PD  T + VL+ACSH 
Sbjct: 235 RDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHA 294

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629
           GLVD G + F  M   Y I   + HY CM+DLL RAG+L+EA  ++K M  +P+A  WG 
Sbjct: 295 GLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGA 354

Query: 630 LLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689
           LLGA R+H N +LG  A + + E+EP  +  Y LLS ++A +GRW +  K+R+ M   G 
Sbjct: 355 LLGASRIHGNTELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGV 414

Query: 690 QKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +K PG SW+EV+N+IHTF  GD     T +I   L+ +  +++
Sbjct: 415 KKVPGYSWLEVQNKIHTFKVGDTSHPHTDKIYTFLEEMDLKLK 457



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/403 (31%), Positives = 204/403 (50%), Gaps = 80/403 (19%)

Query: 177 MLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSW 236
           M+SGY +N +  LA   F+ M ERD+ SWN+ML GYV   DL +A   F+++PE+++VSW
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSW 60

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
             MLSGYA+NG + EAR +F +MP++N ++WN ++AAYVQ G+IE+A RLF    +   V
Sbjct: 61  NAMLSGYAQNGFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLFESKMDWTLV 120

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF------- 349
           SW  ++ G+VR     + R L D MP ++  + +AMI+GY QN   +EA   F       
Sbjct: 121 SWNCLMGGFVR-----KRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDC 175

Query: 350 DKIGTHDVVC-----------------------------W---NVMIKGYAQCGRMDEAI 377
           +++      C                             W   N ++  Y +CG +DEA 
Sbjct: 176 ERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEAR 235

Query: 378 NLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHL 437
           + F++++ KD+V+WNTMI GYA                                ++ F  
Sbjct: 236 DAFQEILEKDVVSWNTMIHGYA--------------------------------RHGFGE 263

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ-IHHLAIKSGYVNDLFVGNSL 496
           +AL +F LM   G + D +T+   L+AC+H   +  G +  + +    G    L     +
Sbjct: 264 EALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCM 323

Query: 497 ITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAINGNA 537
           + +  + G+++ A+ L K+   +P D  +W +L+    I+GN 
Sbjct: 324 VDLLGRAGQLEEAQNLMKNMPFEP-DAATWGALLGASRIHGNT 365



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/367 (30%), Positives = 189/367 (51%), Gaps = 32/367 (8%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSW 111
           MIS Y +N + + AR LF++MP+R+L SWN M+ GY+ N  +K AR LF++M   D+ SW
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSW 60

Query: 112 ALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI 171
             M++ Y + G +++ARE+F  +P K   + WN ++A Y + G   +AK+L ++     +
Sbjct: 61  NAMLSGYAQNGFVDEAREIFYKMPLKNGIS-WNGLLAAYVQNGRIEDAKRLFESKMDWTL 119

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ 231
           VSWN ++ G+ +          F+ M +RD +SW+ M+ GY +    + A  FF ++   
Sbjct: 120 VSWNCLMGGFVRK-----RRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRD 174

Query: 232 ----NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA-----W---NAMIAAYVQRGQ 279
               N  S+   LS  +     + A  L  Q+  R V A     W   NA++A Y + G 
Sbjct: 175 CERLNRSSFTCALSTCSN----IAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGS 230

Query: 280 IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI----AAQTAMISG 335
           I+EA   F E+ E++ VSW TMI GY R    +EA  + + M    I    A   ++++ 
Sbjct: 231 IDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAA 290

Query: 336 YVQNKRMDEANQIFDKIG-----THDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIV 389
                 +D+ ++ F  +      T  +V +  M+    + G+++EA NL + M    D  
Sbjct: 291 CSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAA 350

Query: 390 TWNTMIA 396
           TW  ++ 
Sbjct: 351 TWGALLG 357



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 120/417 (28%), Positives = 208/417 (49%), Gaps = 64/417 (15%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           ++ + + A  +F +M +++  ++N M++ Y +N  +  AR LFE+MP+R++VSWN+M++G
Sbjct: 7   RNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSG 66

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKED--TACWN 144
           Y  N  V EARE+F KM   +  SW  ++  Y + G +E A+ LF+   +K D     WN
Sbjct: 67  YAQNGFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLFE---SKMDWTLVSWN 123

Query: 145 AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV-- 202
            ++ G+ +     + + L D MP ++ +SW++M++GY++NG    A  FF  M +RD   
Sbjct: 124 CLMGGFVR-----KRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEM-QRDCER 177

Query: 203 -----------------------------------VSW---NLMLDGYVELDDLDSAWKF 224
                                                W   N +L  Y +   +D A   
Sbjct: 178 LNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDA 237

Query: 225 FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNA----MIAAYVQRGQI 280
           FQ+I E++VVSW TM+ GYAR+G   EA  +F+ M    +   +A    ++AA    G +
Sbjct: 238 FQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLV 297

Query: 281 EEAARLFIEMPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG 335
           ++ +  F  M     ++     +T M+D   R  +L+EA+ L+  MP++  AA    + G
Sbjct: 298 DQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLG 357

Query: 336 YVQ---NKRMDE-ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
             +   N  + E A QI  ++  H+   + ++ K YA  GR  +A  +  +M NK +
Sbjct: 358 ASRIHGNTELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGV 414



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 106/309 (34%), Positives = 161/309 (52%), Gaps = 38/309 (12%)

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW 205
           M++GY +   ++ A+ L D MP +++ SWN ML+GY +N ++  A   FE M ERD+VSW
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSW 60

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR----------- 254
           N ML GY +   +D A + F K+P +N +SW  +L+ Y +NGR+ +A+R           
Sbjct: 61  NAMLSGYAQNGFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLFESKMDWTLV 120

Query: 255 ---------------LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP---ER-NP 295
                          LFD MP R+ ++W+AMIA Y Q G  EEA   F+EM    ER N 
Sbjct: 121 SWNCLMGGFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNR 180

Query: 296 VSWTTMIDGYVRIAKLDEARRL---LDQMPYKN-IAAQTAMISGYVQNKRMDEANQIFDK 351
            S+T  +     IA L+  R+L   L +  Y+       A+++ Y +   +DEA   F +
Sbjct: 181 SSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQE 240

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDA 407
           I   DVV WN MI GYA+ G  +EA+ +F  M    +  D  T  +++A  +    +D  
Sbjct: 241 ILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQG 300

Query: 408 VKIFEEMGK 416
            + F  M +
Sbjct: 301 SEYFYSMNR 309


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 235/744 (31%), Positives = 386/744 (51%), Gaps = 73/744 (9%)

Query: 56  YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSW 111
           Y + G + DA+ LF  +      +WN MI G+    +   A   + KM      PD +++
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 112 ALMI--TCYTRKGELEK-ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS 168
             ++   C  +  ++ K   E  +L+  KED    ++++  YA+ G+ ++A+ L D +P 
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQ 121

Query: 169 KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD-------------VVSWNLMLDGYVEL 215
           K+ V WN ML+GY KNG+   A K F  M   +             V +   MLD   +L
Sbjct: 122 KDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQL 181

Query: 216 DDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
             +  +       P  N     T+L+ Y++   +  AR+LFD  P  ++V+WN +I+ YV
Sbjct: 182 HGIAVSCGLELDSPVAN-----TLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYV 236

Query: 276 QRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIA 327
           Q G + EA  LF  M     + + +++ + +     +  L   + +    +      ++ 
Sbjct: 237 QNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVF 296

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD 387
            ++A+I  Y + + ++ A +I  +  + D V    MI GY   G+  EA+  FR +V + 
Sbjct: 297 LKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQER 356

Query: 388 I----VTWNTMIAG-----------------------------------YAQIRQMDDAV 408
           +    VT++++                                      YA+  ++D A 
Sbjct: 357 MKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLAC 416

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
           ++F  +   ++ + WN++I+   QN    +A+ +F  M  EG + D  +++ ALSACA+L
Sbjct: 417 RVFNRI-TEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANL 475

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
            AL  G++IH L IK    +DL+  +SLI MYAKCG +  +  +F      + +SWNS+I
Sbjct: 476 PALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWNSII 535

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI 588
           + Y  +G+  E + LF EM+  G+ PD VTF+G++SAC H G VD G++ +  MTE Y I
Sbjct: 536 SAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGI 595

Query: 589 EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVE 648
              +EHYAC+ D+  RAGRLDEAFE +  M   P+AG+WGTLLGAC +H N++L  +A +
Sbjct: 596 PARMEHYACVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASK 655

Query: 649 KLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFL 708
            L +L+P  +  Y LL+N+ A AG+W +V KVR  M+  G +K PG SWIEV N  H F+
Sbjct: 656 HLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRKVPGYSWIEVNNATHMFV 715

Query: 709 SGDPKQCRTAEICNTLKTLAAQIR 732
           + D     TA+I + L +L  +++
Sbjct: 716 AADGSHPLTAQIYSVLDSLLLELK 739



 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 143/562 (25%), Positives = 258/562 (45%), Gaps = 65/562 (11%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           +++    +S+I  YA+NG ++DA+ LF+ +PQ++ V WN M+ GY+ N     A ++F +
Sbjct: 90  KEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLE 149

Query: 103 M----FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGN 155
           M     +P+  ++A +++    +  L+   +L  +  +   + D+   N ++A Y+K   
Sbjct: 150 MRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQC 209

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSWNLMLDG 211
              A+KL D  P  ++VSWN ++SGY +NG M  A   F  M     + D +++   L  
Sbjct: 210 LQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPC 269

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSG----YARNGRMLEARRLFDQMPIRNVVAW 267
             EL  L    +    I    VV  V + S     Y +   +  A+++  Q    + V  
Sbjct: 270 VNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVC 329

Query: 268 NAMIAAYVQRGQIEEAARLF----IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
             MI+ YV  G+ +EA   F     E  +   V+++++   +  +A L+  + L   +  
Sbjct: 330 TTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIK 389

Query: 324 KNIAAQ----TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
             +  +    +A++  Y +  R+D A ++F++I   D +CWN MI   +Q GR  EAINL
Sbjct: 390 TKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINL 449

Query: 380 FRQM---------------------------------------VNKDIVTWNTMIAGYAQ 400
           FRQM                                       +  D+   +++I  YA+
Sbjct: 450 FRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAK 509

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
              ++ + ++F+ M + RN VSWN++IS +  +    + L +F  M + G + DH T   
Sbjct: 510 CGNLNFSRRVFDRM-QERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLG 568

Query: 461 ALSACAHLAALQLGRQIHHLAIKS-GYVNDLFVGNSLITMYAKCGRIQNA-ELLFKDADP 518
            +SAC H   +  G + +HL  +  G    +     +  M+ + GR+  A E +     P
Sbjct: 569 IISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINSMPFP 628

Query: 519 VDVISWNSLIAGYAINGNATEA 540
            D   W +L+    I+GN   A
Sbjct: 629 PDAGVWGTLLGACHIHGNVELA 650



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 125/259 (48%), Gaps = 23/259 (8%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM----PQRNLVSWNS 82
           K GR++ A ++F+++++K+ + +NSMI++ ++NGR  +A  LF QM     + + VS + 
Sbjct: 408 KCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISG 467

Query: 83  MIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
            ++   +   +   +E+   M     R DL++ + +I  Y + G L  +R +FD +  + 
Sbjct: 468 ALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERN 527

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASKFF 194
           + + WN++++ Y   G+  E   L   M    I    V++  ++S     G++    +++
Sbjct: 528 EVS-WNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYY 586

Query: 195 EAMEERDVVS-----WNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSWVTMLSGYARNGR 248
             M E   +      +  + D +     LD A++    +P   +   W T+L     +G 
Sbjct: 587 HLMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGN 646

Query: 249 M----LEARRLFDQMPIRN 263
           +    + ++ LFD  P+ +
Sbjct: 647 VELAEVASKHLFDLDPLNS 665



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/330 (21%), Positives = 138/330 (41%), Gaps = 87/330 (26%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNT-------------------------------- 46
           N  IT   ++GR  EAI +F QM  + T                                
Sbjct: 431 NSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIK 490

Query: 47  -------VTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEAREL 99
                     +S+I  YAK G +N +R++F++M +RN VSWNS+I+ Y ++  +KE   L
Sbjct: 491 GPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNHGDLKECLAL 550

Query: 100 FDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPNK-------EDTACWNAMVA 148
           F +M R    PD  ++  +I+     G++++    + L+  +       E  AC   M  
Sbjct: 551 FHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADM-- 608

Query: 149 GYAKIGNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL 207
            + + G  +EA + +++MP   +   W ++L     +G + LA          +V S +L
Sbjct: 609 -FGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELA----------EVASKHL 657

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
                 +LD L+S +           V    + +G  +  ++L+ R +  +  +R V  +
Sbjct: 658 F-----DLDPLNSGY----------YVLLANVQAGAGKWRKVLKVRSIMKERGVRKVPGY 702

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
           + +        ++  A  +F+     +P++
Sbjct: 703 SWI--------EVNNATHMFVAADGSHPLT 724



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 83/178 (46%), Gaps = 14/178 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S ++ ++  I    K G +  + ++F +M ++N V++NS+ISAY  +G + +   LF +M
Sbjct: 495 SDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNHGDLKECLALFHEM 554

Query: 73  ----PQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGE 123
                Q + V++  +I+   H  +V E    +  M         +  +A +   + R G 
Sbjct: 555 LRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGR 614

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
           L++A E  + +P   D   W  ++      GN   A+     + SK++   + + SGY
Sbjct: 615 LDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAE-----VASKHLFDLDPLNSGY 667



 Score = 47.8 bits (112), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 84/175 (48%), Gaps = 4/175 (2%)

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           MY + G +++A+ LF         +WN +I G+ + G    A+  + +M+  GV+PD  T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
           F  V+ AC  +  V  G K+      +  ++  V   + +I L +  G L +A  +   +
Sbjct: 61  FPYVVKACCGLKSVKMG-KIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 619 KIKPNAGIWGTLL-GACRMHQNIKLGRIAVE-KLSELEPQKTSCYALLSNMHAEA 671
             K ++ +W  +L G  +   +    +I +E + SE++P   +   +LS   +EA
Sbjct: 120 PQK-DSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEA 173


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/698 (31%), Positives = 371/698 (53%), Gaps = 61/698 (8%)

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAR 128
           P  N+  WNS+I    HN    EA  L+ +  R    PD +++  +I       + E A+
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 129 ELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
            + D + +     D    NA++  Y +  + ++A+K+ + MP +++VSWNS++SGY  NG
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 195

Query: 186 EMHLASKFFEAMEERDVVSWNLMLD-------GYVELDDLDSAWKFFQKIP-EQNVVSWV 237
             + A + +       VV  +  +        G   +++ D      +KI  +++V+   
Sbjct: 196 YWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNN 255

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER---N 294
            +LS Y +   +++ RR+FD+M +R+ V+WN MI  Y Q G  EE+ +LF+EM  +   +
Sbjct: 256 GLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKPD 315

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYK----NIAAQTAMISGYVQNKRMDEANQIFD 350
            ++ T+++     +  L+  + + D M       +  A   +I+ Y +   +  + ++F 
Sbjct: 316 LLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFS 375

Query: 351 KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM--------------------------- 383
            +   D V WN MI  Y Q G  DEA+ LF+ M                           
Sbjct: 376 GMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLHLG 435

Query: 384 -----------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
                       N +IV  NT++  YA+  +M D++K+FE M K R+ ++WN +I+  + 
Sbjct: 436 KELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENM-KARDIITWNTIIASCVH 494

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
           +E     L++   M  EG   D +T+   L  C+ LAA + G++IH    K G  +D+ V
Sbjct: 495 SEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPV 554

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
           GN LI MY+KCG ++N+  +FK     DV++W +LI+   + G   +A++ F EM   G+
Sbjct: 555 GNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGI 614

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
            PD V F+ ++ ACSH GLV+ GL  F  M + Y IEP +EHYAC++DLLSR+  LD+A 
Sbjct: 615 VPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAE 674

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672
           + +  M +KP++ IWG LL ACRM  + ++     E++ EL P  T  Y L+SN++A  G
Sbjct: 675 DFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALG 734

Query: 673 RWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSG 710
           +WD+V  +R S++  G +K PGCSW+E++N+++ F +G
Sbjct: 735 KWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTG 772



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 115/496 (23%), Positives = 228/496 (45%), Gaps = 71/496 (14%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS ++  N  I    +   +++A K+F +M  ++ V++NS+IS Y  NG  N+A +++ +
Sbjct: 147 GSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYR 206

Query: 72  ------MP---------------------------------QRNLVSWNSMIAGYLHNDK 92
                 +P                                 +++++  N +++ Y   + 
Sbjct: 207 FRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNG 266

Query: 93  VKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN--KEDTACWNAMVAGY 150
           + + R +FDKM   D  SW  MI  Y++ G  E++ +LF  + N  K D     +++   
Sbjct: 267 LIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKPDLLTITSILQAC 326

Query: 151 AKIGNYNEAKKLLDAMPSK----NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN 206
             +G+    K + D M +     +  + N +++ Y K G +  + + F  M+ +D VSWN
Sbjct: 327 GHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWN 386

Query: 207 LMLDGYVELDDLDSAWKFFQKIP---EQNVVSWVTMLSGYARNGRMLEARRLFDQMPI-- 261
            M++ Y++    D A K F+ +    + + V++V +LS   + G +   + L   +    
Sbjct: 387 SMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMG 446

Query: 262 --RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLD 319
              N+V  N ++  Y + G++ ++ ++F  M  R+ ++W T+I   V     +   R++ 
Sbjct: 447 FNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMIS 506

Query: 320 QMPYKNIAAQTAMI-------SGYVQNKRMDEANQIFDKIGTH-DVVCWNVMIKGYAQCG 371
           +M  + +    A +       S     ++  E +    K+G   DV   NV+I+ Y++CG
Sbjct: 507 RMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCG 566

Query: 372 RMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALI- 427
            +  +  +F+ M  KD+VTW  +I+      +   AV+ F EM   G   + V++ A+I 
Sbjct: 567 SLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIF 626

Query: 428 ----SGFLQ---NEFH 436
               SG ++   N FH
Sbjct: 627 ACSHSGLVEEGLNYFH 642



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 92/182 (50%)

Query: 394 MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA 453
           +IA YA  R    +  +F       N   WN++I     N    +AL ++    +   + 
Sbjct: 54  LIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQP 113

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
           D  T    ++ACA L   ++ + IH   +  G+ +DL++GN+LI MY +   +  A  +F
Sbjct: 114 DTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVF 173

Query: 514 KDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVD 573
           ++    DV+SWNSLI+GY  NG   EA++++      GV PD  T   VL AC  +G V+
Sbjct: 174 EEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVE 233

Query: 574 GG 575
            G
Sbjct: 234 EG 235



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/358 (21%), Positives = 151/358 (42%), Gaps = 79/358 (22%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
            N  I    K G +  + ++FS M  K++V++NSMI+ Y +NG  ++A KLF+ M     
Sbjct: 354 SNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD-- 411

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF-DL--L 134
                                      +PD  ++ ++++  T+ G+L   +EL  DL  +
Sbjct: 412 --------------------------VKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKM 445

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
               +    N +V  YAK G   ++ K+ + M +++I++WN++++    + + +L  +  
Sbjct: 446 GFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMI 505

Query: 195 EAME---------------------------------------ERDVVSWNLMLDGYVEL 215
             M                                        E DV   N++++ Y + 
Sbjct: 506 SRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKC 565

Query: 216 DDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP----IRNVVAWNAMI 271
             L ++++ F+ +  ++VV+W  ++S     G   +A R F +M     + + VA+ A+I
Sbjct: 566 GSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAII 625

Query: 272 AAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQMPYK 324
            A    G +EE    F  M +   +      +  ++D   R A LD+A   +  MP K
Sbjct: 626 FACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLK 683


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 233/657 (35%), Positives = 357/657 (54%), Gaps = 68/657 (10%)

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           F  + F    +++ Y R G L  AR +FD +P++ +T  +NA+++  A++G  ++A  L 
Sbjct: 46  FAGETFLLNTLLSAYARLGSLHDARRVFDGMPHR-NTFSYNALLSACARLGRADDALALF 104

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS-AW 222
            A+P  +  S+N++++   ++G    A +F  AM   D V     L+ Y     L + A 
Sbjct: 105 GAIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFV-----LNAYSFASALSACAS 159

Query: 223 KFFQKIPEQ------------NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAM 270
           +   +  EQ            +V     ++  YA+  R  EA+++FD MP RN+V+WN++
Sbjct: 160 EKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSL 219

Query: 271 IAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMP---- 322
           I  Y Q G ++EA  LF+ M +     + V+  +++     +A   E R++  +M     
Sbjct: 220 ITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDR 279

Query: 323 -YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
             +++    A++  Y +  R  EA  +FD++    VV    MI GYA+   + +A  +F 
Sbjct: 280 FREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFL 339

Query: 382 QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALK 441
           QMV K++V WN +IA YA                                 N    +AL+
Sbjct: 340 QMVEKNVVAWNVLIATYA--------------------------------HNSEEEEALR 367

Query: 442 IFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV------NDLFVGNS 495
           +FV + +E     H T    L+ACA+LA LQLG+Q H   +K G+       +D+FVGNS
Sbjct: 368 LFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNS 427

Query: 496 LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555
           L+ MY K G I +   +F+     D +SWN++I GYA NG A +A+ LFE M+     PD
Sbjct: 428 LVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPD 487

Query: 556 PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV 615
            VT IGVLSAC H GLV  G + F+ MTE + I P  +HY CMIDLL RAG L E  E++
Sbjct: 488 SVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELI 547

Query: 616 KGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWD 675
           + M ++P+A +W +LLGACR+H+NI +G  A  KL EL+P  +  Y LLSNM+AE G+W 
Sbjct: 548 ENMPMEPDAVLWASLLGACRLHKNIDMGEWAAGKLFELDPDNSGPYVLLSNMYAELGKWA 607

Query: 676 EVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDP-KQCRTAEICNTLKTLAAQI 731
           +V +VR SM+  G  KQPGCSWIE+  +++ FL+ D    CR  EI +TL+ +  Q+
Sbjct: 608 DVFRVRRSMKHRGVSKQPGCSWIEIGRKVNVFLARDNIHPCRN-EIHDTLRIIQMQM 663



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/465 (26%), Positives = 216/465 (46%), Gaps = 65/465 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            F  N  ++   + G + +A ++F  M  +NT +YN+++SA A+ GR +DA  LF  +P 
Sbjct: 50  TFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPD 109

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL----FSWALMIT-CYTRKGEL--EKA 127
            +  S+N+++A    + +  +A      M   D     +S+A  ++ C + K     E+ 
Sbjct: 110 PDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQV 169

Query: 128 RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
             L     +  D     A+V  YAK     EA+K+ DAMP +NIVSWNS+++ Y +NG +
Sbjct: 170 HALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPV 229

Query: 188 HLASKFFEAM--------------------------EER--------------DVVSWNL 207
             A   F  M                          E R              D+V  N 
Sbjct: 230 DEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNA 289

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
           ++D Y +      A   F ++  ++VVS  +M++GYA++  + +A+ +F QM  +NVVAW
Sbjct: 290 LVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAW 349

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERN--PVSWT--TMIDGYVRIAKLDEARRL------ 317
           N +IA Y    + EEA RLF+ +   +  P  +T   +++    +A L   ++       
Sbjct: 350 NVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLK 409

Query: 318 ----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRM 373
                D  P  ++    +++  Y++   + +  ++F+++   D V WN MI GYAQ GR 
Sbjct: 410 EGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNGRA 469

Query: 374 DEAINLFRQMV----NKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            +A+ LF +M+      D VT   +++       + +  + F+ M
Sbjct: 470 KDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSM 514



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 115/440 (26%), Positives = 199/440 (45%), Gaps = 42/440 (9%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTY--NSMISAYAKNGRVNDARKLFE 70
           +Y F          K+ R  E +      S   +  Y   +++  YAK  R  +A+K+F+
Sbjct: 147 AYSFASALSACASEKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFD 206

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEK 126
            MP+RN+VSWNS+I  Y  N  V EA  LF +M    F PD  + A +++         +
Sbjct: 207 AMPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGRE 266

Query: 127 ARELFDLLPN----KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYT 182
            R++   +      +ED    NA+V  YAK G   EAK + D M  +++VS  SM++GY 
Sbjct: 267 GRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYA 326

Query: 183 KNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS- 241
           K+  +  A   F  M E++VV+WN+++  Y    + + A + F ++  ++V  W T  + 
Sbjct: 327 KSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESV--WPTHYTY 384

Query: 242 ---------------GYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
                          G   +  +L+    FD  P  +V   N+++  Y++ G I + A++
Sbjct: 385 GNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKV 444

Query: 287 FIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYV----QNKRM 342
           F  M  R+ VSW  MI GY +  +  +A  L ++M   N    +  + G +     +  +
Sbjct: 445 FERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLV 504

Query: 343 DEANQIFDKIG-THDVVC----WNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIA 396
            E  + F  +   H ++     +  MI    + G + E   L   M +  D V W +++ 
Sbjct: 505 KEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDAVLWASLLG 564

Query: 397 GYAQIRQMD----DAVKIFE 412
                + +D     A K+FE
Sbjct: 565 ACRLHKNIDMGEWAAGKLFE 584



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 161/339 (47%), Gaps = 30/339 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +    K GR  EA  +F +M+ ++ V+  SMI+ YAK+  V DA+ +F QM ++N+V
Sbjct: 288 NALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVV 347

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAREL---- 130
           +WN +IA Y HN + +EA  LF ++ R    P  +++  ++        L+  ++     
Sbjct: 348 AWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHV 407

Query: 131 ------FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
                 FD  P + D    N++V  Y K G+ ++  K+ + M +++ VSWN+M+ GY +N
Sbjct: 408 LKEGFRFDSGP-ESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQN 466

Query: 185 GEMHLASKFFEAM----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV-----S 235
           G    A   FE M    E  D V+   +L        +    ++FQ + E + +      
Sbjct: 467 GRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGIIPTRDH 526

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE----EAARLFIEM 290
           +  M+    R G + E   L + MP+  + V W +++ A      I+     A +LF E+
Sbjct: 527 YTCMIDLLGRAGHLKEVEELIENMPMEPDAVLWASLLGACRLHKNIDMGEWAAGKLF-EL 585

Query: 291 PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
              N   +  + + Y  + K  +  R+   M ++ ++ Q
Sbjct: 586 DPDNSGPYVLLSNMYAELGKWADVFRVRRSMKHRGVSKQ 624



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 8/101 (7%)

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
           S +  + F+ N+L++ YA+ G + +A  +F      +  S+N+L++  A  G A +A+ L
Sbjct: 44  SPFAGETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALAL 103

Query: 544 FEEMVMEGVAPDP--VTFIGVLSACSHVGLVDGGLKLFECM 582
           F      G  PDP   ++  V++A +  G     L+    M
Sbjct: 104 F------GAIPDPDQCSYNAVVAALAQHGRGGDALRFLAAM 138


>gi|18481717|gb|AAL73539.1|AF466200_18 hypothetical protein S250_18C08.29 [Sorghum bicolor]
          Length = 679

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 223/633 (35%), Positives = 360/633 (56%), Gaps = 12/633 (1%)

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           N    N+++  Y    ++++A++LFD+M   D+ SW  ++T Y   G L  AR +FD +P
Sbjct: 40  NRAHLNALLTSYGRRGRIQDAQQLFDRMPHRDVISWTALLTAYADVGNLASARFVFDDMP 99

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
            + + A WNA+V+ Y + G    A  L    P+KN VS+ ++++G  + G +  A   + 
Sbjct: 100 LR-NAASWNALVSLYLRAGRPAAAHALFCKAPAKNAVSYGAIITGLARAGMLREAQAVYW 158

Query: 196 AMEER--DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEAR 253
            M  R  D V  N M+ GY+   +L  A + F  +  ++V+SW  M+ G  + G + EAR
Sbjct: 159 EMPPRWRDPVGSNAMIWGYLRGGELGMALRVFDGMAARDVISWSAMVDGLCKYGTVSEAR 218

Query: 254 RLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIA 309
           RLF+ MP RNVV+W +MI  YV+ G   +   LF++M       N ++ + ++DG  + +
Sbjct: 219 RLFEAMPERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNMITLSVVLDGCAQAS 278

Query: 310 KLDEARR---LLDQMPY-KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIK 365
            +DE  +   L+ +M + ++I    ++I  Y +   M +A  +F  +   D+V WN +I 
Sbjct: 279 LVDEGSQVHCLMIRMGFAEDIFLGDSLIIMYSRFGSMADARSLFSFMNQKDIVSWNSLIT 338

Query: 366 GYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
           GY Q   +++A  LF+ M  KD ++W +M+ G+A    M ++V++FE+M   ++ ++W A
Sbjct: 339 GYVQNDMIEDAHVLFKLMPEKDAISWTSMVVGFANRGWMRESVELFEQM-PVKDEIAWAA 397

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485
           ++S  + N  ++ A++ F  M+QEG + +    +C LSA A LA L  G Q H  A+  G
Sbjct: 398 VMSSLVANGNYVSAVRWFCQMSQEGCRPNTVAFSCLLSALASLAMLNQGLQAHAYAVNMG 457

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
           ++ D  V  SL+TMYAKCGR+  A  +F       +I+ NS+I  +A +G A +A KLF 
Sbjct: 458 WIFDSAVHASLVTMYAKCGRLAEAHRVFSCISHPSLIATNSMITAFAQHGLAEDAFKLFN 517

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRA 605
            M  +G  P+ VTF+G+L+AC+  GLV  G   FE M  VY I+P  +HY CM+DLL RA
Sbjct: 518 RMQYDGQRPNHVTFLGILTACARAGLVQHGYNYFESMRSVYGIQPNPDHYTCMVDLLGRA 577

Query: 606 GRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLS 665
           G L+EA EM   M  K     W  LL +  +H N+ L ++A ++L E++P   + Y +LS
Sbjct: 578 GFLNEALEMTNSMPQKDYPDAWKALLSSSSLHSNLDLAKLAAQRLLEIDPYDATAYTVLS 637

Query: 666 NMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWI 698
           NM + AG  ++ E V+V+   + A K PG S I
Sbjct: 638 NMFSSAGMKEDEEMVKVAQLSNMASKSPGYSLI 670



 Score =  232 bits (591), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 140/504 (27%), Positives = 254/504 (50%), Gaps = 49/504 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +T  G+ GR+++A ++F +M  ++ +++ ++++AYA  G +  AR +F+ MP RN  
Sbjct: 45  NALLTSYGRRGRIQDAQQLFDRMPHRDVISWTALLTAYADVGNLASARFVFDDMPLRNAA 104

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF-DLLPNK 137
           SWN++++ YL   +   A  LF K    +  S+  +IT   R G L +A+ ++ ++ P  
Sbjct: 105 SWNALVSLYLRAGRPAAAHALFCKAPAKNAVSYGAIITGLARAGMLREAQAVYWEMPPRW 164

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            D    NAM+ GY + G    A ++ D M +++++SW++M+ G  K G +  A + FEAM
Sbjct: 165 RDPVGSNAMIWGYLRGGELGMALRVFDGMAARDVISWSAMVDGLCKYGTVSEARRLFEAM 224

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSG----------- 242
            ER+VVSW  M+ GYV+          F  +  +    N+++   +L G           
Sbjct: 225 PERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNMITLSVVLDGCAQASLVDEGS 284

Query: 243 ------------------------YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
                                   Y+R G M +AR LF  M  +++V+WN++I  YVQ  
Sbjct: 285 QVHCLMIRMGFAEDIFLGDSLIIMYSRFGSMADARSLFSFMNQKDIVSWNSLITGYVQND 344

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
            IE+A  LF  MPE++ +SWT+M+ G+     + E+  L +QMP K+  A  A++S  V 
Sbjct: 345 MIEDAHVLFKLMPEKDAISWTSMVVGFANRGWMRESVELFEQMPVKDEIAWAAVMSSLVA 404

Query: 339 NKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVT 390
           N     A + F ++       + V ++ ++   A    +++ +      VN     D   
Sbjct: 405 NGNYVSAVRWFCQMSQEGCRPNTVAFSCLLSALASLAMLNQGLQAHAYAVNMGWIFDSAV 464

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
             +++  YA+  ++ +A ++F  +    + ++ N++I+ F Q+    DA K+F  M  +G
Sbjct: 465 HASLVTMYAKCGRLAEAHRVFSCI-SHPSLIATNSMITAFAQHGLAEDAFKLFNRMQYDG 523

Query: 451 KKADHSTLACALSACAHLAALQLG 474
           ++ +H T    L+ACA    +Q G
Sbjct: 524 QRPNHVTFLGILTACARAGLVQHG 547



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 170/398 (42%), Gaps = 88/398 (22%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP- 73
           V + +  +  L K G V EA ++F  M ++N V++ SMI  Y K+G   D   LF  M  
Sbjct: 198 VISWSAMVDGLCKYGTVSEARRLFEAMPERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRR 257

Query: 74  ---QRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEK 126
              Q N+++ + ++ G      V E  ++   M R     D+F    +I  Y+R G +  
Sbjct: 258 EGVQVNMITLSVVLDGCAQASLVDEGSQVHCLMIRMGFAEDIFLGDSLIIMYSRFGSMAD 317

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           AR LF  + N++D   WN+++ GY +     +A  L   MP K+ +SW SM+ G+   G 
Sbjct: 318 ARSLFSFM-NQKDIVSWNSLITGYVQNDMIEDAHVLFKLMPEKDAISWTSMVVGFANRGW 376

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSG 242
           M  + + FE M  +D ++W  ++   V   +  SA ++F ++ ++    N V++  +LS 
Sbjct: 377 MRESVELFEQMPVKDEIAWAAVMSSLVANGNYVSAVRWFCQMSQEGCRPNTVAFSCLLSA 436

Query: 243 -----------------------------------YARNGRMLEARRLFDQMPIRNVVAW 267
                                              YA+ GR+ EA R+F  +   +++A 
Sbjct: 437 LASLAMLNQGLQAHAYAVNMGWIFDSAVHASLVTMYAKCGRLAEAHRVFSCISHPSLIAT 496

Query: 268 NAMIAAYVQRGQIEEAARLFIEMP------------------------------------ 291
           N+MI A+ Q G  E+A +LF  M                                     
Sbjct: 497 NSMITAFAQHGLAEDAFKLFNRMQYDGQRPNHVTFLGILTACARAGLVQHGYNYFESMRS 556

Query: 292 ----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
               + NP  +T M+D   R   L+EA  + + MP K+
Sbjct: 557 VYGIQPNPDHYTCMVDLLGRAGFLNEALEMTNSMPQKD 594


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 234/677 (34%), Positives = 356/677 (52%), Gaps = 51/677 (7%)

Query: 81  NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP-NKED 139
           N ++  Y  +  +  AR+LF+++  PD  +   +IT Y   G LE  RE+F+  P    D
Sbjct: 52  NRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRD 111

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYT-------KNGEMH 188
           +  +NAM+ GYA  G+ + A +L  AM   +      ++ S+LS          + G+MH
Sbjct: 112 SVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMH 171

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGR 248
            A           VV   +   G V    L++    + K   +  +S   M+S       
Sbjct: 172 CA-----------VVKTGM---GCVSSSVLNALLSVYVKRASELGISCSAMVS------- 210

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRI 308
              AR+LFD+MP R+ + W  MI  YV+   +  A  +F  M E    +W  MI GYV  
Sbjct: 211 ---ARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHC 267

Query: 309 AKLDEARRL----------LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV 358
               EA  L           D + Y  I +  A +  +   K++  A  + +++  +   
Sbjct: 268 GCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQV-HAYILKNELNPNHSF 326

Query: 359 CW---NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMG 415
           C    N +I  Y +  ++DEA  +F  M  ++I+TWN +++GY    +M++A   FEEM 
Sbjct: 327 CLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEM- 385

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
             +N ++   +ISG  QN F  + LK+F  M  +G +      A AL+AC+ L AL+ GR
Sbjct: 386 PVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGR 445

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
           Q+H   +  GY + L VGN++I+MYAKCG ++ AE +F     VD++SWNS+IA    +G
Sbjct: 446 QLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHG 505

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHY 595
           +  +AI+LF++M+ EGV PD +TF+ VL+ACSH GLV+ G   F  M E Y I P  +HY
Sbjct: 506 HGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHY 565

Query: 596 ACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEP 655
           A M+DL  RAG    A  ++  M  KP A +W  LL  CR+H N+ LG  A E+L +L P
Sbjct: 566 ARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMP 625

Query: 656 QKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQC 715
           Q    Y LLSN++A+ GRW+EV KVR  M     +K+P CSWIEV+N++H F+  D    
Sbjct: 626 QNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHP 685

Query: 716 RTAEICNTLKTLAAQIR 732
               +   L+ L  +++
Sbjct: 686 EVLSVYRYLEQLGLEMK 702



 Score =  177 bits (448), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 149/608 (24%), Positives = 251/608 (41%), Gaps = 149/608 (24%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQ---------------------------------RN 76
           N ++  Y K+  +  AR+LFE++P                                  R+
Sbjct: 52  NRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRD 111

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFD 132
            V +N+MI GY HN     A ELF  M    FRPD F++  +++        E+      
Sbjct: 112 SVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMH 171

Query: 133 LLPNKEDTAC-----WNAMVAGYAKIGN--------YNEAKKLLDAMPSKNIVSWNSMLS 179
               K    C      NA+++ Y K  +           A+KL D MP ++ ++W +M++
Sbjct: 172 CAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMIT 231

Query: 180 GYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VS 235
           GY +N +++ A + FEAM E    +WN M+ GYV       A    +K+    +    ++
Sbjct: 232 GYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDIT 291

Query: 236 WVTMLSG---------------------------------------YARNGRMLEARRLF 256
           + T++S                                        Y +N ++ EAR++F
Sbjct: 292 YTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIF 351

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
             MP+RN++ WNA+++ YV  G++EEA   F EMP +N ++ T MI G  +    DE  +
Sbjct: 352 YAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLK 411

Query: 317 LLDQMPYKNI---------AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367
           L  QM              A     + G ++N R   A Q+        +   N MI  Y
Sbjct: 412 LFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHA-QLVHLGYESSLSVGNAMISMY 470

Query: 368 AQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
           A+CG ++ A ++F  M + D+V+WN+MIA   Q      A+++F++M K           
Sbjct: 471 AKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLK----------- 519

Query: 428 SGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV 487
                                EG   D  T    L+AC+H   ++ GR   +  ++S  +
Sbjct: 520 ---------------------EGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGI 558

Query: 488 N---DLFVGNSLITMYAKCGRIQNAELLF-----KDADPVDVISWNSLIAGYAINGNATE 539
               D +    ++ ++ + G    A ++      K   PV    W +L+AG  I+GN   
Sbjct: 559 TPCEDHYA--RMVDLFCRAGMFSYARIVIDSMPSKPGAPV----WEALLAGCRIHGNMDL 612

Query: 540 AIKLFEEM 547
            I+  E++
Sbjct: 613 GIEAAEQL 620



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 121/469 (25%), Positives = 208/469 (44%), Gaps = 78/469 (16%)

Query: 22  ITQLGKSGRVEEAIKIF--SQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRN--- 76
           IT     G +E   +IF  + +  +++V YN+MI+ YA NG  + A +LF  M + +   
Sbjct: 86  ITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRP 145

Query: 77  -------------LVSWNSMIAGYLHNDKVK----------------------------- 94
                        L   N    G +H   VK                             
Sbjct: 146 DDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISC 205

Query: 95  ----EARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGY 150
                AR+LFD+M + D  +W  MIT Y R  +L  ARE+F+ +      A WNAM++GY
Sbjct: 206 SAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAA-WNAMISGY 264

Query: 151 AKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASKFFEAMEERDV---- 202
              G + EA  L   M    I    +++ +++S     G   +  +    + + ++    
Sbjct: 265 VHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNH 324

Query: 203 -----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFD 257
                VS N ++  Y + + +D A K F  +P +N+++W  +LSGY   GRM EA+  F+
Sbjct: 325 SFCLSVS-NALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFE 383

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDE 313
           +MP++N++    MI+   Q G  +E  +LF +M     E    ++   +     +  L+ 
Sbjct: 384 EMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALEN 443

Query: 314 ARRLLDQMPY----KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ 369
            R+L  Q+ +     +++   AMIS Y +   ++ A  +F  + + D+V WN MI    Q
Sbjct: 444 GRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQ 503

Query: 370 CGRMDEAINLFRQMVNK----DIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            G   +AI LF QM+ +    D +T+ T++   +    ++     F  M
Sbjct: 504 HGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSM 552



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/323 (30%), Positives = 167/323 (51%), Gaps = 22/323 (6%)

Query: 20  KKITQLGKS-GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           K+ ++LG S   +  A K+F +M +++ +T+ +MI+ Y +N  +N AR++FE M +    
Sbjct: 196 KRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGA 255

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELF--- 131
           +WN+MI+GY+H    +EA  L  KM     + D  ++  +I+     G  +  +++    
Sbjct: 256 AWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYI 315

Query: 132 ---DLLPNKEDT-ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
              +L PN     +  NA++  Y K    +EA+K+  AMP +NI++WN++LSGY   G M
Sbjct: 316 LKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRM 375

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLS-- 241
             A  FFE M  +++++  +M+ G  +    D   K F+++     E    ++   L+  
Sbjct: 376 EEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTAC 435

Query: 242 ---GYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW 298
              G   NGR L A +L       ++   NAMI+ Y + G +E A  +F+ MP  + VSW
Sbjct: 436 SVLGALENGRQLHA-QLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSW 494

Query: 299 TTMIDGYVRIAKLDEARRLLDQM 321
            +MI    +     +A  L DQM
Sbjct: 495 NSMIAALGQHGHGVKAIELFDQM 517



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 168/344 (48%), Gaps = 22/344 (6%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
            N  IT   K+ +V+EA KIF  M  +N +T+N+++S Y   GR+ +A+  FE+MP +NL
Sbjct: 331 SNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNL 390

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDL 133
           ++   MI+G   N    E  +LF +M    F P  F++A  +T  +  G LE  R+L   
Sbjct: 391 LTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQ 450

Query: 134 LPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           L +   +   +  NAM++ YAK G    A+ +   MPS ++VSWNSM++   ++G    A
Sbjct: 451 LVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKA 510

Query: 191 SKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLS 241
            + F+ M +     D +++  +L        ++    +F  + E   ++     +  M+ 
Sbjct: 511 IELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVD 570

Query: 242 GYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQ----IEEAARLFIEMPERNPV 296
            + R G    AR + D MP +     W A++A     G     IE A +LF  MP+ N  
Sbjct: 571 LFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQ-NDG 629

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340
           ++  + + Y  + + +E  ++   M  + +  + A     V+NK
Sbjct: 630 TYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENK 673


>gi|242080473|ref|XP_002445005.1| hypothetical protein SORBIDRAFT_07g002620 [Sorghum bicolor]
 gi|241941355|gb|EES14500.1| hypothetical protein SORBIDRAFT_07g002620 [Sorghum bicolor]
          Length = 679

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 223/633 (35%), Positives = 360/633 (56%), Gaps = 12/633 (1%)

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           N    N+++  Y    ++++A++LFD+M   D+ SW  ++T Y   G L  AR +FD +P
Sbjct: 40  NRAHLNALLTSYGRRGRIQDAQQLFDRMPHRDVISWTALLTAYADVGNLASARFVFDDMP 99

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
            + + A WNA+V+ Y + G    A  L    P+KN VS+ ++++G  + G +  A   + 
Sbjct: 100 LR-NAASWNALVSLYLRAGRPAAAHALFCKAPAKNAVSYGAIITGLARAGMLREAQAVYW 158

Query: 196 AMEER--DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEAR 253
            M  R  D V  N M+ GY+   +L  A + F  +  ++V+SW  M+ G  + G + EAR
Sbjct: 159 EMPPRWRDPVGSNAMIWGYLRGGELGMALRVFDGMAARDVISWSAMVDGLCKYGTVSEAR 218

Query: 254 RLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIA 309
           RLF+ MP RNVV+W +MI  YV+ G   +   LF++M       N ++ + ++DG  + +
Sbjct: 219 RLFEAMPERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNMITLSVVLDGCAQAS 278

Query: 310 KLDEARR---LLDQMPY-KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIK 365
            +DE  +   L+ +M + ++I    ++I  Y +   M +A  +F  +   D+V WN +I 
Sbjct: 279 LVDEGSQVHCLMIRMGFAEDIFLGDSLIIMYSRFGSMADARSLFSFMNQKDIVSWNSLIT 338

Query: 366 GYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
           GY Q   +++A  LF+ M  KD ++W +M+ G+A    M ++V++FE+M   ++ ++W A
Sbjct: 339 GYVQNDMIEDAHVLFKLMPEKDAISWTSMVVGFANRGWMRESVELFEQM-PVKDEIAWAA 397

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485
           ++S  + N  ++ A++ F  M+QEG + +    +C LSA A LA L  G Q H  A+  G
Sbjct: 398 VMSSLVANGNYVSAVRWFCQMSQEGCRPNTVAFSCLLSALASLAMLNQGLQAHAYAVNMG 457

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
           ++ D  V  SL+TMYAKCGR+  A  +F       +I+ NS+I  +A +G A +A KLF 
Sbjct: 458 WIFDSAVHASLVTMYAKCGRLAEAHRVFSCISHPSLIATNSMITAFAQHGLAEDAFKLFN 517

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRA 605
            M  +G  P+ VTF+G+L+AC+  GLV  G   FE M  VY I+P  +HY CM+DLL RA
Sbjct: 518 RMQYDGQRPNHVTFLGILTACARAGLVQHGYNYFESMRSVYGIQPNPDHYTCMVDLLGRA 577

Query: 606 GRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLS 665
           G L+EA EM   M  K     W  LL +  +H N+ L ++A ++L E++P   + Y +LS
Sbjct: 578 GFLNEALEMTNSMPQKDYPDAWKVLLSSSSLHSNLDLAKLAAQRLLEIDPYDATAYTVLS 637

Query: 666 NMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWI 698
           NM + AG  ++ E V+V+   + A K PG S I
Sbjct: 638 NMFSSAGMKEDEEMVKVAQLSNMASKSPGYSLI 670



 Score =  232 bits (591), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 140/504 (27%), Positives = 254/504 (50%), Gaps = 49/504 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +T  G+ GR+++A ++F +M  ++ +++ ++++AYA  G +  AR +F+ MP RN  
Sbjct: 45  NALLTSYGRRGRIQDAQQLFDRMPHRDVISWTALLTAYADVGNLASARFVFDDMPLRNAA 104

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF-DLLPNK 137
           SWN++++ YL   +   A  LF K    +  S+  +IT   R G L +A+ ++ ++ P  
Sbjct: 105 SWNALVSLYLRAGRPAAAHALFCKAPAKNAVSYGAIITGLARAGMLREAQAVYWEMPPRW 164

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            D    NAM+ GY + G    A ++ D M +++++SW++M+ G  K G +  A + FEAM
Sbjct: 165 RDPVGSNAMIWGYLRGGELGMALRVFDGMAARDVISWSAMVDGLCKYGTVSEARRLFEAM 224

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSG----------- 242
            ER+VVSW  M+ GYV+          F  +  +    N+++   +L G           
Sbjct: 225 PERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNMITLSVVLDGCAQASLVDEGS 284

Query: 243 ------------------------YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
                                   Y+R G M +AR LF  M  +++V+WN++I  YVQ  
Sbjct: 285 QVHCLMIRMGFAEDIFLGDSLIIMYSRFGSMADARSLFSFMNQKDIVSWNSLITGYVQND 344

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
            IE+A  LF  MPE++ +SWT+M+ G+     + E+  L +QMP K+  A  A++S  V 
Sbjct: 345 MIEDAHVLFKLMPEKDAISWTSMVVGFANRGWMRESVELFEQMPVKDEIAWAAVMSSLVA 404

Query: 339 NKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVT 390
           N     A + F ++       + V ++ ++   A    +++ +      VN     D   
Sbjct: 405 NGNYVSAVRWFCQMSQEGCRPNTVAFSCLLSALASLAMLNQGLQAHAYAVNMGWIFDSAV 464

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
             +++  YA+  ++ +A ++F  +    + ++ N++I+ F Q+    DA K+F  M  +G
Sbjct: 465 HASLVTMYAKCGRLAEAHRVFSCI-SHPSLIATNSMITAFAQHGLAEDAFKLFNRMQYDG 523

Query: 451 KKADHSTLACALSACAHLAALQLG 474
           ++ +H T    L+ACA    +Q G
Sbjct: 524 QRPNHVTFLGILTACARAGLVQHG 547



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 170/398 (42%), Gaps = 88/398 (22%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP- 73
           V + +  +  L K G V EA ++F  M ++N V++ SMI  Y K+G   D   LF  M  
Sbjct: 198 VISWSAMVDGLCKYGTVSEARRLFEAMPERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRR 257

Query: 74  ---QRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEK 126
              Q N+++ + ++ G      V E  ++   M R     D+F    +I  Y+R G +  
Sbjct: 258 EGVQVNMITLSVVLDGCAQASLVDEGSQVHCLMIRMGFAEDIFLGDSLIIMYSRFGSMAD 317

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           AR LF  + N++D   WN+++ GY +     +A  L   MP K+ +SW SM+ G+   G 
Sbjct: 318 ARSLFSFM-NQKDIVSWNSLITGYVQNDMIEDAHVLFKLMPEKDAISWTSMVVGFANRGW 376

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSG 242
           M  + + FE M  +D ++W  ++   V   +  SA ++F ++ ++    N V++  +LS 
Sbjct: 377 MRESVELFEQMPVKDEIAWAAVMSSLVANGNYVSAVRWFCQMSQEGCRPNTVAFSCLLSA 436

Query: 243 -----------------------------------YARNGRMLEARRLFDQMPIRNVVAW 267
                                              YA+ GR+ EA R+F  +   +++A 
Sbjct: 437 LASLAMLNQGLQAHAYAVNMGWIFDSAVHASLVTMYAKCGRLAEAHRVFSCISHPSLIAT 496

Query: 268 NAMIAAYVQRGQIEEAARLFIEMP------------------------------------ 291
           N+MI A+ Q G  E+A +LF  M                                     
Sbjct: 497 NSMITAFAQHGLAEDAFKLFNRMQYDGQRPNHVTFLGILTACARAGLVQHGYNYFESMRS 556

Query: 292 ----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
               + NP  +T M+D   R   L+EA  + + MP K+
Sbjct: 557 VYGIQPNPDHYTCMVDLLGRAGFLNEALEMTNSMPQKD 594


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/526 (38%), Positives = 302/526 (57%), Gaps = 41/526 (7%)

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP---------------- 291
           RM  AR+LFDQ+P  N+  WN+M   Y Q     E   LF +M                 
Sbjct: 148 RMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLK 207

Query: 292 -----------------------ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA 328
                                    NP   TT+ID Y     + +A ++  +M  +N+ A
Sbjct: 208 SCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVA 267

Query: 329 QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
            T+MI+GY+ +  +  A ++FD     DVV WN+M+ GY + G M EA  LF +M N+D+
Sbjct: 268 WTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFXEMPNRDV 327

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
           + WNT++ GYA    ++    +FEEM   RN  SWNALI G+  N    + L  F  M  
Sbjct: 328 MFWNTVLKGYATNGNVEALEGLFEEM-PERNIFSWNALIGGYAHNGLFFEVLGSFKRMLS 386

Query: 449 EGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
           E     + +TL   LSACA L AL LG+ +H  A  SG   +++VGN+L+ MYAKCG I+
Sbjct: 387 ESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIE 446

Query: 508 NAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
           NA  +F+  D  D+ISWN+LI G A++    +A+ LF +M   G  PD +TFIG+L AC+
Sbjct: 447 NAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACT 506

Query: 568 HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIW 627
           H+GLV+ G   F+ M + Y I P +EHY CM+D+L+RAGRL++A   V+ M ++ +  IW
Sbjct: 507 HMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIW 566

Query: 628 GTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGS 687
             LLGACR+++N++L  +A+++L ELEP+  + Y +LSN++ +AGRW++V +++V+M  +
Sbjct: 567 AGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDT 626

Query: 688 GAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           G +K PGCS IEV + +  F S D +  +  EI   L+ L   +R+
Sbjct: 627 GFKKLPGCSLIEVNDAVVEFYSLDERHPQIEEIYGVLRGLVKVLRS 672



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 162/635 (25%), Positives = 280/635 (44%), Gaps = 108/635 (17%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKE 95
           +I +   Q N      +++  A   R+  AR+LF+Q+P  N+  WNSM  GY  ++  +E
Sbjct: 123 QIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYRE 182

Query: 96  ARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVA 148
              LF +M     RP+ F++ +++    +   L +  ++   L     + +      ++ 
Sbjct: 183 VVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLID 242

Query: 149 GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLM 208
            Y+  G   +A K+   M  +N+V+W SM++GY  + ++  A + F+   ERDVV WN+M
Sbjct: 243 MYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIM 302

Query: 209 LDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN 268
           + GY+E  D+  A K F ++P ++V+ W T+L GYA NG +     LF++MP RN+ +WN
Sbjct: 303 VSGYIEGGDMVEARKLFXEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWN 362

Query: 269 AMIAAYVQRGQIEEAARLFIEMPER-----NPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
           A+I  Y   G   E    F  M        N  +  T++    R+  LD  +       +
Sbjct: 363 ALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGK-------W 415

Query: 324 KNIAAQTAMISG--YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
            ++ A+++ + G  YV N  MD                       YA+CG ++ AI++FR
Sbjct: 416 VHVYAESSGLKGNVYVGNALMDM----------------------YAKCGIIENAISVFR 453

Query: 382 QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALK 441
            M  KD+++WNT+I G A   +  D                                AL 
Sbjct: 454 GMDTKDLISWNTLIGGLAMHSRGAD--------------------------------ALN 481

Query: 442 IFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV------GNS 495
           +F  M   G+K D  T    L AC H+  ++ G      A      +D  +         
Sbjct: 482 LFFQMKNAGQKPDGITFIGILCACTHMGLVEDG-----FAYFQSMADDYLIMPQIEHYGC 536

Query: 496 LITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA 553
           ++ M A+ GR++ A    +   PV  D + W  L+    I  N  E  +L  + ++E   
Sbjct: 537 MVDMLARAGRLEQAXAFVRKM-PVEADGVIWAGLLGACRIYKN-VELAELALQRLIELEP 594

Query: 554 PDPVTFIGVLS------------ACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601
            +P  ++ +LS            A   V + D G K     + +   + +VE Y+    L
Sbjct: 595 KNPANYV-MLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYS----L 649

Query: 602 LSRAGRLDEAFEMVKGM-KIKPNAGIWGTLLGACR 635
             R  +++E + +++G+ K+  + G    L GA R
Sbjct: 650 DERHPQIEEIYGVLRGLVKVLRSFGYVPDLTGAGR 684



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 115/437 (26%), Positives = 193/437 (44%), Gaps = 63/437 (14%)

Query: 20  KKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP----QR 75
           K +T      R+  A ++F Q+   N   +NSM   YA++    +   LF QM     + 
Sbjct: 138 KLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRP 197

Query: 76  NLVSW----------NSMIAG-------------------------YLHNDKVKEARELF 100
           N  ++          N++I G                         Y     V +A ++F
Sbjct: 198 NCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIF 257

Query: 101 DKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
            +MF  ++ +W  MI  Y    +L  AR LFDL P + D   WN MV+GY + G+  EA+
Sbjct: 258 CEMFERNVVAWTSMINGYILSADLVSARRLFDLAPER-DVVLWNIMVSGYIEGGDMVEAR 316

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
           KL   MP+++++ WN++L GY  NG +      FE M ER++ SWN ++ GY        
Sbjct: 317 KLFXEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFE 376

Query: 221 AWKFFQKIPEQ-----NVVSWVTMLSGYARNGRMLEARRLF---DQMPIR-NVVAWNAMI 271
               F+++  +     N  + VT+LS  AR G +   + +    +   ++ NV   NA++
Sbjct: 377 VLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALM 436

Query: 272 AAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
             Y + G IE A  +F  M  ++ +SW T+I G    ++  +A  L  QM  KN   +  
Sbjct: 437 DMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQM--KNAGQKPD 494

Query: 332 MIS-----------GYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF 380
            I+           G V++      +   D +    +  +  M+   A+ GR+++A    
Sbjct: 495 GITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAXAFV 554

Query: 381 RQM-VNKDIVTWNTMIA 396
           R+M V  D V W  ++ 
Sbjct: 555 RKMPVEADGVIWAGLLG 571



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 153/338 (45%), Gaps = 51/338 (15%)

Query: 340 KRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI----------- 388
           KRM  A Q+FD+I   ++  WN M +GYAQ     E + LF QM   DI           
Sbjct: 147 KRMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVL 206

Query: 389 ----------------------------VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
                                           T+I  Y+    + DA KIF EM + RN 
Sbjct: 207 KSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFE-RNV 265

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
           V+W ++I+G++ +   + A ++F L  +      +  ++  +     + A +L  ++ + 
Sbjct: 266 VAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFXEMPN- 324

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEA 540
                   D+   N+++  YA  G ++  E LF++    ++ SWN+LI GYA NG   E 
Sbjct: 325 -------RDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEV 377

Query: 541 IKLFEEMVMEG-VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMI 599
           +  F+ M+ E  V P+  T + VLSAC+ +G +D G K      E   ++  V     ++
Sbjct: 378 LGSFKRMLSESDVPPNDATLVTVLSACARLGALDLG-KWVHVYAESSGLKGNVYVGNALM 436

Query: 600 DLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMH 637
           D+ ++ G ++ A  + +GM  K +   W TL+G   MH
Sbjct: 437 DMYAKCGIIENAISVFRGMDTK-DLISWNTLIGGLAMH 473



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 100/215 (46%), Gaps = 12/215 (5%)

Query: 475 RQIHHLA---IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGY 531
           +Q+H +    I +G+  + ++   L+T+ A   R+  A  LF      ++  WNS+  GY
Sbjct: 115 KQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRGY 174

Query: 532 AINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV-YAIEP 590
           A + +  E + LF +M    + P+  TF  VL +C  +  +  G ++   + +  +   P
Sbjct: 175 AQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNP 234

Query: 591 LVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL 650
            V     +ID+ S  G + +A+++   M  + N   W +++    +  ++    ++  +L
Sbjct: 235 FVG--TTLIDMYSAGGTVGDAYKIFCEM-FERNVVAWTSMINGYILSADL----VSARRL 287

Query: 651 SELEPQK-TSCYALLSNMHAEAGRWDEVEKVRVSM 684
            +L P++    + ++ + + E G   E  K+   M
Sbjct: 288 FDLAPERDVVLWNIMVSGYIEGGDMVEARKLFXEM 322


>gi|147836314|emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]
          Length = 768

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/677 (32%), Positives = 380/677 (56%), Gaps = 21/677 (3%)

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN 136
           ++S N  I+ Y    K+  AR+LFD+M +  + SW  MI+ Y++ G   +A  L   +  
Sbjct: 72  IISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHR 131

Query: 137 ---KEDTACWNAMVAGYAKIGNYNEAKKL----LDAMPSKNIVSWNSMLSGYTKNGEMHL 189
              K   + ++++++  A++    + K +    L +      +  +++L  Y    E+  
Sbjct: 132 SHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIGE 191

Query: 190 ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG-- 247
           A + F+ +  R+ V W+LML GYV  + +D A   F K+P ++VV+W T++SG+++NG  
Sbjct: 192 ARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDG 251

Query: 248 --RMLEARRLF----DQMPIRNVVAWNAMIAAYVQRGQIEEA----ARLFIEMPERNPVS 297
             + LE  RL     +  P  N   ++ ++ A  + G +         L     E +P  
Sbjct: 252 CGKALEMFRLMMRSGETTP--NEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSI 309

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV 357
              +++ Y     +D+A R+   +    + A  ++I G +   R+++A  +F+ +   + 
Sbjct: 310 GGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTEMNP 369

Query: 358 VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
           V +N+MIKGYA  G+MD++  LF +M  + I + NTMI+ Y++  ++D A+++FEE    
Sbjct: 370 VSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKALELFEETKNE 429

Query: 418 RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI 477
           ++ V+WN++ISG++ +    +ALK+++ M +   +   ST +    AC+ L +LQ G+ +
Sbjct: 430 KDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTRSTFSALFHACSCLGSLQQGQLL 489

Query: 478 HHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNA 537
           H   IK+ + ++++VG SLI MY+KCG I  A+  F      +V +W +LI G+A +G  
Sbjct: 490 HAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHAYHGLG 549

Query: 538 TEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYAC 597
           +EAI LF+ M+ +G+AP+  TF+GVLSACS  GLV+ G+K+F  M   Y++ P +EHYAC
Sbjct: 550 SEAISLFDXMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMERCYSVTPTLEHYAC 609

Query: 598 MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK 657
           ++DLL R+G + EA E +K M ++ +  +WG LL AC    ++++G    EK+   +P+ 
Sbjct: 610 VVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSACWFWMDLEVGERVAEKMFSFDPKP 669

Query: 658 TSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRT 717
            S Y +LSN++A  GRW E   VR  + G   +K PGCSWIE+ N+IH F   D      
Sbjct: 670 ISSYVILSNIYAGLGRWREKMMVRKILRGFKVKKDPGCSWIELNNKIHVFSIEDRSHPYC 729

Query: 718 AEICNTLKTLAAQIRNT 734
             I  TL+ L A I + 
Sbjct: 730 NMIYATLEHLTANINSV 746



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 156/613 (25%), Positives = 266/613 (43%), Gaps = 118/613 (19%)

Query: 22  ITQLGKSGRVEEAIKIFS--QMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVS 79
           I++  K  R++E  K+++  Q +    ++ N  IS YAK  +++ AR+LF+QMPQR +VS
Sbjct: 47  ISKAWKHQRLKE-FKLYTAHQSNLSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVS 105

Query: 80  WNSMIAGYLHNDKVKEARELFDKMFRPDL------FSWALMITCY---TRKGE------L 124
           WN+MI+ Y  + +  EA  L   M R  +      FS  L +       R G+      L
Sbjct: 106 WNTMISSYSKHGRFSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVL 165

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
           +   E F+L+         +A++  YA      EA+++ D +  +N V W+ ML GY   
Sbjct: 166 KSGSESFELVG--------SALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTC 217

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVE-LDDLDSAWKFF-------QKIPEQNVVSW 236
             M  A   F  M  RDVV+W  ++ G+ +  D    A + F       +  P +     
Sbjct: 218 NVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEMFRLMMRSGETTPNEFTFDC 277

Query: 237 VT-------MLS-GYARNGRML-------------------EARRLFDQMPI-RNVV--- 265
           V        +LS G   +G ++                   E   + D + + + VV   
Sbjct: 278 VVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPC 337

Query: 266 --AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
             A N++I   +  G+IE+A  +F  M E NPVS+  MI GY    ++D+++RL ++MP 
Sbjct: 338 LNALNSLIEGLISMGRIEDAELVFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPC 397

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIFDKIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQ 382
           + I +   MIS Y +N  +D+A ++F++     D V WN MI GY   G+ +EA+ L+  
Sbjct: 398 RTIFSSNTMISVYSRNGEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYIT 457

Query: 383 M---------------------------------------VNKDIVTWNTMIAGYAQIRQ 403
           M                                          ++    ++I  Y++   
Sbjct: 458 MHRLSIQQTRSTFSALFHACSCLGSLQQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGS 517

Query: 404 MDDA----VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
           + +A    V IF       N  +W ALI+G   +    +A+ +F  M ++G   + +T  
Sbjct: 518 IMEAQTSFVSIFSP-----NVAAWTALINGHAYHGLGSEAISLFDXMIEQGLAPNGATFV 572

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS-LITMYAKCGRIQNAELLFKDAD- 517
             LSAC+    +  G +I H   +   V       + ++ +  + G I+ AE   K    
Sbjct: 573 GVLSACSRAGLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPL 632

Query: 518 PVDVISWNSLIAG 530
             D + W +L++ 
Sbjct: 633 EADGVVWGALLSA 645



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 122/480 (25%), Positives = 220/480 (45%), Gaps = 70/480 (14%)

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL 317
           Q  +  +++ N  I+ Y ++ +++ A +LF +MP+R  VSW TMI  Y +  +  EA  L
Sbjct: 66  QSNLSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFL 125

Query: 318 LDQMPYKNIAAQTAMISG---------------YVQNKRMDEANQIFDKIGTHDVVCWNV 362
           +  M   ++    +  S                 +    +   ++ F+ +G+        
Sbjct: 126 VYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGS-------A 178

Query: 363 MIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
           ++  YA C  + EA  +F  +V ++ V W+ M+ GY     MDDA+ +F +M  RR+ V+
Sbjct: 179 LLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKM-PRRDVVA 237

Query: 423 WNALISGFLQN-EFHLDALKIFVLMTQEGKKADHS-TLACALSACAHLAALQLGRQIHHL 480
           W  LISGF +N +    AL++F LM + G+   +  T  C + AC  L  L +GR +H L
Sbjct: 238 WTTLISGFSKNGDGCGKALEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGL 297

Query: 481 AIKSGYVNDLFVGNSLITMYAKC-------------------------------GRIQNA 509
            +K G   D  +G +L+  Y +C                               GRI++A
Sbjct: 298 LMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDA 357

Query: 510 ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
           EL+F     ++ +S+N +I GYA+ G   ++ +LFE+M    +         ++S  S  
Sbjct: 358 ELVFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNT----MISVYSRN 413

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM---KIKPNAGI 626
           G +D  L+LFE        +P+   +  MI     +G+ +EA ++   M    I+     
Sbjct: 414 GEIDKALELFEETKN--EKDPVT--WNSMISGYIHSGQPEEALKLYITMHRLSIQQTRST 469

Query: 627 WGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCY--ALLSNMHAEAGRWDEVEKVRVSM 684
           +  L  AC    +++ G++    L +  P +++ Y    L +M+++ G   E +   VS+
Sbjct: 470 FSALFHACSCLGSLQQGQLLHAHLIK-TPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSI 528



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 158/321 (49%), Gaps = 18/321 (5%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I  L   GR+E+A  +F+ M++ N V+YN MI  YA  G+++D+++LFE+MP R + 
Sbjct: 342 NSLIEGLISMGRIEDAELVFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIF 401

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM-FRPDLFSWALMITCYTRKGELEKARELF---DLL 134
           S N+MI+ Y  N ++ +A ELF++     D  +W  MI+ Y   G+ E+A +L+     L
Sbjct: 402 SSNTMISVYSRNGEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRL 461

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAK----KLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
             ++  + ++A+    + +G+  + +     L+      N+    S++  Y+K G +  A
Sbjct: 462 SIQQTRSTFSALFHACSCLGSLQQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEA 521

Query: 191 SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARN 246
              F ++   +V +W  +++G+        A   F  + EQ    N  ++V +LS  +R 
Sbjct: 522 QTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLFDXMIEQGLAPNGATFVGVLSACSRA 581

Query: 247 GRMLEARRLFDQM----PIRNVVAWNAMIAAYVQR-GQIEEAARLFIEMP-ERNPVSWTT 300
           G + E  ++F  M     +   +   A +   + R G I EA     +MP E + V W  
Sbjct: 582 GLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGA 641

Query: 301 MIDGYVRIAKLDEARRLLDQM 321
           ++        L+   R+ ++M
Sbjct: 642 LLSACWFWMDLEVGERVAEKM 662


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Glycine max]
          Length = 1033

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 245/767 (31%), Positives = 401/767 (52%), Gaps = 80/767 (10%)

Query: 45  NTVTYNSMISAYAK-NGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
           + V  N ++S Y+  +  ++DAR++FE++  +   SWNS+I+ Y        A +LF  M
Sbjct: 176 DMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSM 235

Query: 104 --------FRPDLFSWALMIT--CYTRKGELEKARELFDLLPNK---EDTACWNAMVAGY 150
                    RP+ +++  ++T  C      L    ++   +      +D    +A+V+G+
Sbjct: 236 QREATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGF 295

Query: 151 AKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME---ERDVVSWNL 207
           A+ G  + AK + + M  +N V+ N ++ G  +  +   A+K F+ M+   E +  S+ +
Sbjct: 296 ARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDLVEINASSYAV 355

Query: 208 MLDGYVELDDLDSAWKFFQKIPE---QNVVSWVTMLSG------YARNGRMLEARRLFDQ 258
           +L  + E  +L    +  Q++     +N +  V +L G      YA+   +  AR +F  
Sbjct: 356 LLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQL 415

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-SWTTMIDGYVRIAKLDEARRL 317
           MP ++ V+WN++I+      + EEA   F  M     V S  ++I      A L     +
Sbjct: 416 MPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWI--M 473

Query: 318 LDQMPYK---------NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
           L Q  +          +++   A+++ Y +   M+E  ++F  +  +D V WN  I   A
Sbjct: 474 LGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALA 533

Query: 369 QC-GRMDEAINLFRQM---------------------------------------VNKDI 388
                + +AI  F +M                                       V  D 
Sbjct: 534 TSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQIHALILKHSVADDN 593

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
              NT++A Y +  QM+D   IF  M +RR+ VSWNA+ISG++ N     A+ +  LM Q
Sbjct: 594 AIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQ 653

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
           +G++ D  TLA  LSACA +A L+ G ++H  AI++    ++ VG++L+ MYAKCG+I  
Sbjct: 654 KGQRLDDFTLATVLSACASVATLERGMEVHACAIRACLEAEVVVGSALVDMYAKCGKIDY 713

Query: 509 AELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
           A   F+     ++ SWNS+I+GYA +G+  +A+KLF +M   G  PD VTF+GVLSACSH
Sbjct: 714 ASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSACSH 773

Query: 569 VGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWG 628
           VGLVD G + F+ M EVY + P +EH++CM+DLL RAG + +  E +K M + PNA IW 
Sbjct: 774 VGLVDEGFEHFKSMGEVYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNPNALIWR 833

Query: 629 TLLGAC--RMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEG 686
           T+LGAC     +N +LGR A + L ELEP     Y LLSNMHA  G+W++VE+ R++M  
Sbjct: 834 TILGACCRANSRNTELGRRAAKMLIELEPLNAVNYVLLSNMHAAGGKWEDVEEARLAMRN 893

Query: 687 SGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           +  +K+ GCSW+ +K+ +H F++GD       +I + LK +  ++R+
Sbjct: 894 AEVKKEAGCSWVTMKDGVHVFVAGDQTHPEKEKIYDKLKEIMNKMRD 940



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 179/692 (25%), Positives = 324/692 (46%), Gaps = 86/692 (12%)

Query: 28  SGRVEEAIKIFSQMSQKNTVT----YNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSM 83
           S  VE+A ++  Q+ +    +     N++++ + + G +  A+KLF++MPQ+NLVSW+ +
Sbjct: 52  SCTVEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCL 111

Query: 84  IAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGE------LEKARELFDLL--- 134
           ++GY  N    EA  LF  +    L      I    R  +      L+   E+  L+   
Sbjct: 112 VSGYAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKS 171

Query: 135 PNKEDTACWNAMVAGYAKI-GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
           P   D    N +++ Y+    + ++A+++ + +  K   SWNS++S Y + G+   A K 
Sbjct: 172 PYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKL 231

Query: 194 FEAMEERDVVSWNLMLDGY-------VELDDLDSAWKFFQ----KIPEQNVVSWV----T 238
           F +M+ R+    N   + Y       V    +D      +    +I + + V  +     
Sbjct: 232 FSSMQ-REATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSFVKDLYVGSA 290

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP---ERNP 295
           ++SG+AR G +  A+ +F+QM  RN V  N ++    ++ Q EEAA++F EM    E N 
Sbjct: 291 LVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDLVEINA 350

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQMP---YKN------IAAQTAMISGYVQNKRMDEAN 346
            S+  ++  +   + L E +R   ++     +N      I    A+++ Y +   +D A 
Sbjct: 351 SSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNAR 410

Query: 347 QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----------------------- 383
            IF  + + D V WN +I G     R +EA+  F  M                       
Sbjct: 411 SIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLG 470

Query: 384 ----------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
                           ++ D+   N ++  YA+   M++  K+F  M    + VSWN+ I
Sbjct: 471 WIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLM-PEYDQVSWNSFI 529

Query: 428 SGFLQNEFH-LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
                +E   L A+K F+ M Q G K +  T    LSA + L+ L+LGRQIH L +K   
Sbjct: 530 GALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQIHALILKHSV 589

Query: 487 VNDLFVGNSLITMYAKCGRIQNAELLF-KDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
            +D  + N+L+  Y KC ++++ E++F + ++  D +SWN++I+GY  NG   +A+ L  
Sbjct: 590 ADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMGLVW 649

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRA 605
            M+ +G   D  T   VLSAC+ V  ++ G+++  C      +E  V   + ++D+ ++ 
Sbjct: 650 LMMQKGQRLDDFTLATVLSACASVATLERGMEVHACAIRA-CLEAEVVVGSALVDMYAKC 708

Query: 606 GRLDEAFEMVKGMKIKPNAGIWGTLLGACRMH 637
           G++D A    + M ++ N   W +++     H
Sbjct: 709 GKIDYASRFFELMPVR-NIYSWNSMISGYARH 739



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 128/534 (23%), Positives = 214/534 (40%), Gaps = 139/534 (26%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
           K+    ++++S +A+ G ++ A+ +FEQM  RN V+ N ++ G     + +EA ++F +M
Sbjct: 283 KDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEM 342

Query: 104 FRPDLF-----SWALMITCYTRKGELE----KARELFDLLPNKEDTACW----NAMVAGY 150
              DL      S+A++++ +T    L+    K +E+   L        W    NA+V  Y
Sbjct: 343 --KDLVEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLY 400

Query: 151 AKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME------------ 198
           AK    + A+ +   MPSK+ VSWNS++SG   N     A   F  M             
Sbjct: 401 AKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVI 460

Query: 199 ---------------------------ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ 231
                                      + DV   N +L  Y E D ++   K F  +PE 
Sbjct: 461 STLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEY 520

Query: 232 NVVSWVTMLSGYARN-GRMLEARRLFDQM------P------------------------ 260
           + VSW + +   A +   +L+A + F +M      P                        
Sbjct: 521 DQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQI 580

Query: 261 ----IRNVVA-----WNAMIAAYVQRGQIEEAARLFIEMPER-NPVSWTTMIDGYVRIAK 310
               +++ VA      N ++A Y +  Q+E+   +F  M ER + VSW  MI GY+    
Sbjct: 581 HALILKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISGYIHNGI 640

Query: 311 LDEARRL----------LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW 360
           L +A  L          LD      + +  A ++     + M+            +VV  
Sbjct: 641 LHKAMGLVWLMMQKGQRLDDFTLATVLSACASVA--TLERGMEVHACAIRACLEAEVVVG 698

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
           + ++  YA+CG++D A   F  M  ++I +WN+MI+GYA+      A+K+F +       
Sbjct: 699 SALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQ------- 751

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
                                    M Q G+  DH T    LSAC+H+  +  G
Sbjct: 752 -------------------------MKQHGQLPDHVTFVGVLSACSHVGLVDEG 780



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 153/311 (49%), Gaps = 16/311 (5%)

Query: 377 INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
           + +++  +  D+   NT++  + +   +  A K+F+EM  ++N VSW+ L+SG+ QN   
Sbjct: 63  LQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEM-PQKNLVSWSCLVSGYAQNGMP 121

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAA--LQLGRQIHHLAIKSGYVNDLFVGN 494
            +A  +F  +   G   +H  +  AL AC  L    L+LG +IH L  KS Y +D+ + N
Sbjct: 122 DEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVLSN 181

Query: 495 SLITMYAKC-GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA 553
            L++MY+ C   I +A  +F++       SWNS+I+ Y   G+A  A KLF  M  E   
Sbjct: 182 VLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREATE 241

Query: 554 ----PDPVTFIGVLS-ACSHVGLVDGGLKLFECMTEVYAIEPLVEHY---ACMIDLLSRA 605
               P+  TF  +++ ACS   LVD GL L E M         V+     + ++   +R 
Sbjct: 242 LNCRPNEYTFCSLVTVACS---LVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFARY 298

Query: 606 GRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLS 665
           G +D A  + + M  +    + G ++G  R HQ  +  +I  +++ +L     S YA+L 
Sbjct: 299 GLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKI-FKEMKDLVEINASSYAVLL 357

Query: 666 NMHAEAGRWDE 676
           +   E     E
Sbjct: 358 SAFTEFSNLKE 368



 Score = 40.8 bits (94), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 85/212 (40%), Gaps = 42/212 (19%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQK----NTVTYNSMISAYAKNGRVNDARKLFE 70
           +++ N  I+   + G   +A+K+F+QM Q     + VT+  ++SA +  G V++      
Sbjct: 726 IYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSACSHVGLVDE------ 779

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
                          G+ H   + E  EL      P +  ++ M+    R G+++K  E 
Sbjct: 780 ---------------GFEHFKSMGEVYEL-----APRIEHFSCMVDLLGRAGDVKKLEEF 819

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYN-----EAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
              +P   +   W  ++    +  + N      A K+L  +   N V++  + + +   G
Sbjct: 820 IKTMPMNPNALIWRTILGACCRANSRNTELGRRAAKMLIELEPLNAVNYVLLSNMHAAGG 879

Query: 186 ------EMHLASKFFEAMEERDVVSWNLMLDG 211
                 E  LA +  E  +E    SW  M DG
Sbjct: 880 KWEDVEEARLAMRNAEVKKEAG-CSWVTMKDG 910


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 248/743 (33%), Positives = 403/743 (54%), Gaps = 69/743 (9%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR---- 105
           N +I  Y KNG +N A+K+F+ + +R+ VSW +M++G   +   +EA  LF +M      
Sbjct: 209 NPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVY 268

Query: 106 --PDLFSWALMITCYTRKGELEKARELFDLLPNKE----DTACWNAMVAGYAKIGNYNEA 159
             P +FS +++  C   K E  K  E    L  K+    +T   NA+V  Y+++GN+  A
Sbjct: 269 PTPYIFS-SVLSAC--TKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPA 325

Query: 160 KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSWNLMLDGYVEL 215
           +++ +AM  ++ VS+NS++SG ++ G    A + F+ M     + D V+   +L     +
Sbjct: 326 EQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSV 385

Query: 216 DDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
             L    +F     +  + S +     +L  Y +   +  A   F      NVV WN M+
Sbjct: 386 GALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVML 445

Query: 272 AAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK--- 324
            AY     + E+ ++F +M     E N  ++ +++     +  +D   ++  Q+      
Sbjct: 446 VAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQ 505

Query: 325 -NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
            N+   + +I  Y +  ++D A +IF ++   DVV W  MI GYAQ  +  EA+NLF++M
Sbjct: 506 FNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEM 565

Query: 384 VNK---------------------------------------DIVTWNTMIAGYAQIRQM 404
            ++                                       D+   N +++ YA+  ++
Sbjct: 566 QDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKV 625

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSA 464
            DA   F+++  + N +SWN+LISGF Q+    +AL +F  M++ G++ +  T   A+SA
Sbjct: 626 RDAYFAFDKIFSKDN-ISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSA 684

Query: 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
            A++A ++LG+QIH + IK+G+ ++  V N LIT+YAKCG I +AE  F +    + ISW
Sbjct: 685 AANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISW 744

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           N+++ GY+ +G+  +A+ LFE+M   GV P+ VTF+GVLSACSHVGLVD G+K F+ M E
Sbjct: 745 NAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMRE 804

Query: 585 VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
           V+ + P  EHYAC++DLL R+G L  A   V+ M I+P+A +  TLL AC +H+NI +G 
Sbjct: 805 VHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGE 864

Query: 645 IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQI 704
            A   L ELEP+ ++ Y LLSNM+A  G+W   ++ R  M+  G +K+PG SWIEV N +
Sbjct: 865 FAASHLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSV 924

Query: 705 HTFLSGDPKQCRTAEICNTLKTL 727
           H F +GD K     +I   L+ L
Sbjct: 925 HAFFAGDQKHPNVDKIYEYLRDL 947



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 168/646 (26%), Positives = 278/646 (43%), Gaps = 135/646 (20%)

Query: 114 MITCYTRKGELEKARELFDLLPNKEDTACWNAM----VAGYAKIGNYNEAKKLLDAMPSK 169
           ++  Y   G+L+ A  +FD +P +   +CWN +    VAG          +++L      
Sbjct: 109 LMDLYIAFGDLDGAVTVFDEMPVRP-LSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKP 167

Query: 170 NIVSWNSMLSGYTKNGEM--HLASKFFEAM----EERDVVSWNLMLDGYVELDDLDSAWK 223
           +  ++  +L G    G++  H   K          E  +   N ++D Y +   L+SA K
Sbjct: 168 DERTYAGVLRG-CGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKK 226

Query: 224 FFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV------------------- 264
            F  + +++ VSWV MLSG +++G   EA  LF QM    V                   
Sbjct: 227 VFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEF 286

Query: 265 --------------------VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDG 304
                                  NA++  Y + G    A ++F  M +R+ VS+ ++I G
Sbjct: 287 YKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISG 346

Query: 305 YVRIAKLDEARRLLDQMPY---------------------------------------KN 325
             +    D+A  L  +M                                          +
Sbjct: 347 LSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSD 406

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-- 383
           I  + A++  YV+   +  A++ F    T +VV WNVM+  Y     ++E+  +F QM  
Sbjct: 407 IILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQM 466

Query: 384 -------------------------------------VNKDIVTWNTMIAGYAQIRQMDD 406
                                                   ++   + +I  YA++ ++D 
Sbjct: 467 EGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDH 526

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
           A+KIF  + K ++ VSW A+I+G+ Q+E   +AL +F  M  +G  +D+   A A+SACA
Sbjct: 527 ALKIFRRL-KEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACA 585

Query: 467 HLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNS 526
            + AL  G+QIH  A  SGY +DL VGN+L+++YA+CG++++A   F      D ISWNS
Sbjct: 586 GIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNS 645

Query: 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVY 586
           LI+G+A +G+  EA+ LF +M   G   +  TF   +SA ++V  V  G K    M    
Sbjct: 646 LISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLG-KQIHAMIIKT 704

Query: 587 AIEPLVEHYACMIDLLSRAGRLDEA----FEMVKGMKIKPNAGIWG 628
             +   E    +I L ++ G +D+A    FEM +  +I  NA + G
Sbjct: 705 GHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTG 750



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/419 (23%), Positives = 188/419 (44%), Gaps = 75/419 (17%)

Query: 336 YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI------- 388
           Y+    +D A  +FD++    + CWN ++  +         + LFR+M+ + +       
Sbjct: 113 YIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTY 172

Query: 389 ---------------------------------VTWNTMIAGYAQIRQMDDAVKIFEEMG 415
                                               N +I  Y +   ++ A K+F+ + 
Sbjct: 173 AGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGL- 231

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
           ++R++VSW A++SG  Q+    +A+ +F  M   G        +  LSAC  +   ++G 
Sbjct: 232 QKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGE 291

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
           Q+H L +K G+  + +V N+L+T+Y++ G    AE +F      D +S+NSLI+G +  G
Sbjct: 292 QLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQG 351

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG---------------------LVDG 574
            + +A++LF++M ++ + PD VT   +LSACS VG                     +++G
Sbjct: 352 YSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEG 411

Query: 575 G-LKLFECMTEV-----YAIEPLVEHYACMIDLLSRAGRLD---EAFEMVKGMK---IKP 622
             L L+   +++     + +    E+      +L   G LD   E+F++   M+   I+P
Sbjct: 412 ALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEP 471

Query: 623 NAGIWGTLLGACRMHQNIKLG-RIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKV 680
           N   + ++L  C   + + LG +I  + L           ++L +M+A+ G+ D   K+
Sbjct: 472 NQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKI 530



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 122/282 (43%), Gaps = 35/282 (12%)

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446
           ++V    ++  Y     +D AV +F+EM  R  +  WN ++  F+  +     L +F  M
Sbjct: 102 EVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSC-WNKVLHRFVAGKMAGRVLGLFRRM 160

Query: 447 TQEGKKADHSTLACALSACAHL-AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
            QE  K D  T A  L  C           +IH   I  GY N LFV N LI +Y K G 
Sbjct: 161 LQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGF 220

Query: 506 IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565
           + +A+ +F      D +SW ++++G + +G   EA+ LF +M   GV P P  F  VLSA
Sbjct: 221 LNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSA 280

Query: 566 CSHVGLVDGGLKLFECM------TEVYAIEPLVEHYA----------------------- 596
           C+ V     G +L   +       E Y    LV  Y+                       
Sbjct: 281 CTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSY 340

Query: 597 -CMIDLLSRAGRLDEAFEMVKGM---KIKPNAGIWGTLLGAC 634
             +I  LS+ G  D+A E+ K M    +KP+     +LL AC
Sbjct: 341 NSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSAC 382



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 106/245 (43%), Gaps = 25/245 (10%)

Query: 400 QIRQMDDAVKIFEEMGK--RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHST 457
           +I+Q    V IF    K    NT    AL   +  +E   + +    LM + G +A+  T
Sbjct: 15  KIKQFRPVVSIFFFFQKFLEHNT----ALSYAYSNDEGEANGINFLHLMEERGVRANSQT 70

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD 517
               L  C        G ++H   +K G+  ++ +   L+ +Y   G +  A  +F D  
Sbjct: 71  YLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVF-DEM 129

Query: 518 PVDVIS-WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGL 576
           PV  +S WN ++  +     A   + LF  M+ E V PD  T+ GVL  C       GG 
Sbjct: 130 PVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCG------GGD 183

Query: 577 KLFECMTEVYAIEPLVEH------YAC--MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWG 628
             F C+ +++A    + H      + C  +IDL  + G L+ A ++  G++ K ++  W 
Sbjct: 184 VPFHCVEKIHA--RTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQ-KRDSVSWV 240

Query: 629 TLLGA 633
            +L  
Sbjct: 241 AMLSG 245


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 256/780 (32%), Positives = 423/780 (54%), Gaps = 79/780 (10%)

Query: 22  ITQLGKSGRVEEAIKIFSQ-MSQKNTVTYN-SMISAYAKNGRVNDARKLFEQMPQRNLVS 79
           + QLG+S R     K F+Q +S    V +N     + +K   ++ +++LF++ PQ+ L  
Sbjct: 4   VRQLGRSKRQ----KRFTQSLSGPYDVVFNPKTSLSSSKLSTLSHSQQLFDETPQQGLSR 59

Query: 80  WNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK-- 137
            N ++  +  ND+ KEA  LF  + R    +    ++C      L+    LFD +  K  
Sbjct: 60  NNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCV-----LKVCGCLFDRIVGKQV 114

Query: 138 ----------EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
                     ED +   ++V  Y K  +  + +++ D M  KN+VSW S+L+GY +NG  
Sbjct: 115 HCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLN 174

Query: 188 HLASKFFEAMEERDV---------VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
             A K F  M+   +         V   L  DG VE   +       +   +  +    +
Sbjct: 175 EQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVE-KGVQVHTMVIKSGLDSTIFVGNS 233

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF----IEMPERN 294
           M++ Y+++  + +A+ +FD M  RN V+WN+MIA +V  G   EA  LF    +E  +  
Sbjct: 234 MVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLT 293

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYK----NIAAQTAMISGYVQNKRMDEANQIFD 350
              + T+I     I ++  A++L  Q+       ++  +TA++  Y +   +D+A ++F 
Sbjct: 294 QTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFC 353

Query: 351 KI-GTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAG-------- 397
            + G  +VV W  +I GY Q GR D A+NLF QM    V  +  T++T++          
Sbjct: 354 MMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSPSQ 413

Query: 398 -----------------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
                                  Y++I   ++A KIFE + ++ + V+W+A++SG+ Q  
Sbjct: 414 IHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEK-DIVAWSAMLSGYAQMG 472

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAH-LAALQLGRQIHHLAIKSGYVNDLFVG 493
               A+KIF+ + +EG + +  T +  L+ACA   A+++ G+Q H  +IKSG+ N L V 
Sbjct: 473 DIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVS 532

Query: 494 NSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA 553
           ++L+TMYAK G I++A  +FK     D++SWNS+I+GYA +G   +++K+FEEM  + + 
Sbjct: 533 SALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLE 592

Query: 554 PDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFE 613
            D +TFIGV+SAC+H GLV+ G + F+ M + Y I P +EHY+CM+DL SRAG L++A +
Sbjct: 593 LDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMD 652

Query: 614 MVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGR 673
           ++  M     A IW TLL ACR+H N++LG +A EKL  L+PQ ++ Y LLSN++A AG 
Sbjct: 653 LINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGN 712

Query: 674 WDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           W E  KVR  M+    +K+ G SWIEVKN+  +F++GD    ++  I   L+ L+ ++++
Sbjct: 713 WQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKD 772


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 238/847 (28%), Positives = 414/847 (48%), Gaps = 135/847 (15%)

Query: 18   QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
            QN  +   GK   +  A ++FS + +++ V+YN+M+  YA+   V +   LF QM    +
Sbjct: 221  QNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGI 280

Query: 78   ----VSWNSMIAGYLHNDKVKEARELF----DKMFRPDLFSWALMITCYTRKGELEKARE 129
                V++ +++  +     + E + +     ++    D+     + T + R G++  A++
Sbjct: 281  PPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQ 340

Query: 130  LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS---------------- 173
              +   ++ D   +NA++A  A+ G+Y EA +    M S  +V                 
Sbjct: 341  ALEAFADR-DVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSK 399

Query: 174  -----------------------WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLD 210
                                    NS++S Y + G++  A + F  M +RD++SWN ++ 
Sbjct: 400  ALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIA 459

Query: 211  GYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSG------------------------ 242
            GY   +D   A K ++++  + V    V+++ +LS                         
Sbjct: 460  GYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKS 519

Query: 243  -----------YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
                       Y R G ++EA+ +F+    R++++WN+MIA + Q G  E A +LF+EM 
Sbjct: 520  NGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMK 579

Query: 292  ----ERNPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMD 343
                E + +++ +++ G      L+  R++    ++     ++    A+I+ Y++   + 
Sbjct: 580  KEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQ 639

Query: 344  EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----------------- 386
            +A ++F  +   +V+ W  MI G+A  G   +A  LF QM N                  
Sbjct: 640  DAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACM 699

Query: 387  ----------------------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
                                  D    N +I+ Y++   M DA K+F++M   R+ +SWN
Sbjct: 700  SSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKM-PNRDIMSWN 758

Query: 425  ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
             +I+G+ QN     AL+    M ++G   +  +    L+AC+  +AL+ G+++H   +K 
Sbjct: 759  KMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKR 818

Query: 485  GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLF 544
                D+ VG +LI+MYAKCG ++ A+ +F +    +V++WN++I  YA +G A++A+  F
Sbjct: 819  KMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFF 878

Query: 545  EEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSR 604
              M  EG+ PD  TF  +LSAC+H GLV  G ++F  +   + + P +EHY C++ LL R
Sbjct: 879  NCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGR 938

Query: 605  AGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALL 664
            AGR  EA  ++  M   P+A +W TLLGACR+H N+ L   A     +L  +  + Y LL
Sbjct: 939  AGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLL 998

Query: 665  SNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTL 724
            SN++A AGRWD+V K+R  MEG G +K+PG SWIEV N IH F++ D     TAEI   L
Sbjct: 999  SNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYEEL 1058

Query: 725  KTLAAQI 731
            K L+ ++
Sbjct: 1059 KRLSLEM 1065



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 190/763 (24%), Positives = 333/763 (43%), Gaps = 149/763 (19%)

Query: 33  EAIKIFSQMSQ----KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL 88
           EA +I +QM +     +    N +I+ Y K   V+DA ++F +MP+R+++SWNS+I+ Y 
Sbjct: 100 EAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYA 159

Query: 89  HNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTA 141
                K+A +LF++M    F P   ++  ++T      ELE  +++   +     + D  
Sbjct: 160 QQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPR 219

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER- 200
             N+++  Y K  +   A+++   +  +++VS+N+ML  Y +   +      F  M    
Sbjct: 220 VQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEG 279

Query: 201 ---DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEAR 253
              D V++  +LD +     LD   +  +    + + S +     + + + R G +  A+
Sbjct: 280 IPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAK 339

Query: 254 RLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTT------------- 300
           +  +    R+VV +NA+IAA  Q G  EEA   + +M     V   T             
Sbjct: 340 QALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSK 399

Query: 301 --------------------------MIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMIS 334
                                     +I  Y R   L  AR L + MP +++ +  A+I+
Sbjct: 400 ALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIA 459

Query: 335 GYVQNKRMDEANQIFDKIGTHDV------------VCW---------------------- 360
           GY + +   EA +++ ++ +  V             C                       
Sbjct: 460 GYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKS 519

Query: 361 -----NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMG 415
                N ++  Y +CG + EA N+F     +DI++WN+MIAG+AQ    + A K+F EM 
Sbjct: 520 NGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMK 579

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
           K                                EG + D  T A  L  C +  AL+LGR
Sbjct: 580 K--------------------------------EGLEPDKITFASVLVGCKNPEALELGR 607

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
           QIH L I+SG   D+ +GN+LI MY +CG +Q+A  +F      +V+SW ++I G+A  G
Sbjct: 608 QIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQG 667

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF-ECMTEVYAIEPLVEH 594
              +A +LF +M  +G  P   TF  +L AC     +D G K+    +   Y ++  V +
Sbjct: 668 EDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGN 727

Query: 595 YACMIDLLSRAGRLDEAFEMVKGMKIKPNAGI--WGTLLGACRMHQNIKLGRIAVEKLSE 652
              +I   S++G + +A ++   M   PN  I  W  ++      QN  LG  A++   +
Sbjct: 728 --ALISAYSKSGSMTDARKVFDKM---PNRDIMSWNKMIAG--YAQN-GLGGTALQFAYQ 779

Query: 653 LEPQKT--SCYALLSNMHA-------EAGRWDEVEKVRVSMEG 686
           ++ Q    + ++ +S ++A       E G+    E V+  M+G
Sbjct: 780 MQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQG 822



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 167/370 (45%), Gaps = 45/370 (12%)

Query: 292 ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA----QTAMISGYVQNKRMDEANQ 347
           E N  ++  ++    R   L EA+R+  QM    +         +I+ YV+ + + +A+Q
Sbjct: 79  ETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQ 138

Query: 348 IFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM------------------------ 383
           +F K+   DV+ WN +I  YAQ G   +A  LF +M                        
Sbjct: 139 VFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAE 198

Query: 384 ---------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
                            +D    N+++  Y +   +  A ++F  +  RR+ VS+N ++ 
Sbjct: 199 LEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGI-YRRDVVSYNTMLG 257

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
            + Q  +  + + +F  M+ EG   D  T    L A    + L  G++IH LA+  G  +
Sbjct: 258 LYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNS 317

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           D+ VG +L TM+ +CG +  A+   +     DV+ +N+LIA  A +G+  EA + + +M 
Sbjct: 318 DIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMR 377

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
            +GV  +  T++ VL+ACS    +  G  +   ++EV      V+    +I + +R G L
Sbjct: 378 SDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEV-GHSSDVQIGNSLISMYARCGDL 436

Query: 609 DEAFEMVKGM 618
             A E+   M
Sbjct: 437 PRARELFNTM 446



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 126/556 (22%), Positives = 224/556 (40%), Gaps = 148/556 (26%)

Query: 1    MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
            +++ +KS G+  + + N  ++       G + EA  +F     ++ +++NSMI+ +A++G
Sbjct: 513  LRSGIKSNGHLANALMNMYRRC------GSIMEAQNVFEGTRARDIISWNSMIAGHAQHG 566

Query: 61   RVNDARKLFEQMPQRNL----VSWNSMIAG------------------------------ 86
                A KLF +M +  L    +++ S++ G                              
Sbjct: 567  SYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGN 626

Query: 87   -----YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF------DLLP 135
                 Y+    +++A E+F  +   ++ SW  MI  +  +GE  KA ELF         P
Sbjct: 627  ALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKP 686

Query: 136  NKE--------------------------------DTACWNAMVAGYAKIGNYNEAKKLL 163
             K                                 DT   NA+++ Y+K G+  +A+K+ 
Sbjct: 687  VKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVF 746

Query: 164  DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV----SWNLMLDGYVELDDLD 219
            D MP+++I+SWN M++GY +NG    A +F   M+E+ VV    S+  +L+       L+
Sbjct: 747  DKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALE 806

Query: 220  SAWKFFQKIPEQ----NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
               +   +I ++    +V     ++S YA+ G + EA+ +FD    +NVV WNAMI AY 
Sbjct: 807  EGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYA 866

Query: 276  QR-----------------------------------GQIEEAARLFIEMPERNPVSWTT 300
            Q                                    G + E  R+F  +  ++ +S T 
Sbjct: 867  QHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTI 926

Query: 301  MIDGYV-----RIAKLDEARRLLDQMPYKNIAA------QTAMISGYVQNKRMDEANQIF 349
               G +     R  +  EA  L++QMP+   AA          I G V        N + 
Sbjct: 927  EHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNAL- 985

Query: 350  DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI-----VTW----NTMIAGYAQ 400
             K+   +   + ++   YA  GR D+   + R M  + I      +W    N +    A 
Sbjct: 986  -KLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAA 1044

Query: 401  IRQMDDAVKIFEEMGK 416
             R   +  +I+EE+ +
Sbjct: 1045 DRSHPETAEIYEELKR 1060


>gi|225462731|ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|302143682|emb|CBI22543.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 220/677 (32%), Positives = 379/677 (55%), Gaps = 21/677 (3%)

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN 136
           ++S N  I+ Y    K+  AR+LFD+M +  + SW  MI+ Y++ G   +A  L   +  
Sbjct: 32  IISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHR 91

Query: 137 ---KEDTACWNAMVAGYAKIGNYNEAKKL----LDAMPSKNIVSWNSMLSGYTKNGEMHL 189
              K   + ++++++  A++    + K +    L +      +  +++L  Y    E+  
Sbjct: 92  SHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIGE 151

Query: 190 ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG-- 247
           A + F+ +  R+ V W+LML GYV  + +D A   F K+P ++VV+W T++SG+++NG  
Sbjct: 152 ARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDG 211

Query: 248 --RMLEARRLF----DQMPIRNVVAWNAMIAAYVQRGQIEEA----ARLFIEMPERNPVS 297
             + LE  RL     +  P  N   ++ ++ A  + G +         L     E +P  
Sbjct: 212 CGKALEIFRLMMRSGETTP--NEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSI 269

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV 357
              +++ Y     +D+A R+   +    + A  ++I G +   R+++A  +F+ +   + 
Sbjct: 270 GGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTEMNP 329

Query: 358 VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
           V +N+MIKGYA  G+MD++  LF +M  + I + NTMI+ Y++  ++D A+++FEE    
Sbjct: 330 VSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKALELFEETKNE 389

Query: 418 RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI 477
           ++ V+WN++ISG++ +    +ALK+++ M +   +   ST +    AC+ L +L  G+ +
Sbjct: 390 KDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSALFHACSCLGSLHQGQLL 449

Query: 478 HHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNA 537
           H   IK+ + ++++VG SLI MY+KCG I  A+  F      +V +W +LI G+A +G  
Sbjct: 450 HAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHAYHGLG 509

Query: 538 TEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYAC 597
           +EAI LF+ M+ +G+AP+  TF+GVLSACS  GLV+ G+K+F  M   Y++ P +EHYAC
Sbjct: 510 SEAISLFDRMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMERCYSVTPTLEHYAC 569

Query: 598 MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK 657
           ++DLL R+G + EA E +K M ++ +  +WG LL AC    ++++G    EK+   +P+ 
Sbjct: 570 VVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSACWFWMDLEVGERVAEKMFSFDPKP 629

Query: 658 TSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRT 717
            S Y +LSN++A  GRW E   VR  + G   +K PGCSWIE+ N+IH F   D      
Sbjct: 630 ISSYVILSNIYAGLGRWREKMMVRKILRGFKVKKDPGCSWIELNNKIHVFSIEDRSHPYC 689

Query: 718 AEICNTLKTLAAQIRNT 734
             I  TL+ L A I + 
Sbjct: 690 NMIYATLEHLTANINSV 706



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 156/613 (25%), Positives = 266/613 (43%), Gaps = 118/613 (19%)

Query: 22  ITQLGKSGRVEEAIKIFS--QMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVS 79
           I++  K  R++E  K+++  Q +    ++ N  IS YAK  +++ AR+LF+QMPQR +VS
Sbjct: 7   ISKAWKHQRLKE-FKLYTAHQSNLSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVS 65

Query: 80  WNSMIAGYLHNDKVKEARELFDKMFRPDL------FSWALMITCY---TRKGE------L 124
           WN+MI+ Y  + +  EA  L   M R  +      FS  L +       R G+      L
Sbjct: 66  WNTMISSYSKHGRFSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVL 125

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
           +   E F+L+         +A++  YA      EA+++ D +  +N V W+ ML GY   
Sbjct: 126 KSGSESFELVG--------SALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTC 177

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVE-LDDLDSAWKFF-------QKIPEQNVVSW 236
             M  A   F  M  RDVV+W  ++ G+ +  D    A + F       +  P +     
Sbjct: 178 NVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEIFRLMMRSGETTPNEFTFDC 237

Query: 237 VT-------MLS-GYARNGRML-------------------EARRLFDQMPI-RNVV--- 265
           V        +LS G   +G ++                   E   + D + + + VV   
Sbjct: 238 VVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPC 297

Query: 266 --AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
             A N++I   +  G+IE+A  +F  M E NPVS+  MI GY    ++D+++RL ++MP 
Sbjct: 298 LNALNSLIEGLISMGRIEDAELVFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPC 357

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIFDKIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQ 382
           + I +   MIS Y +N  +D+A ++F++     D V WN MI GY   G+ +EA+ L+  
Sbjct: 358 RTIFSSNTMISVYSRNGEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYIT 417

Query: 383 M---------------------------------------VNKDIVTWNTMIAGYAQIRQ 403
           M                                          ++    ++I  Y++   
Sbjct: 418 MHRLSIQQTQSTFSALFHACSCLGSLHQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGS 477

Query: 404 MDDA----VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
           + +A    V IF       N  +W ALI+G   +    +A+ +F  M ++G   + +T  
Sbjct: 478 IMEAQTSFVSIFSP-----NVAAWTALINGHAYHGLGSEAISLFDRMIEQGLAPNGATFV 532

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS-LITMYAKCGRIQNAELLFKDAD- 517
             LSAC+    +  G +I H   +   V       + ++ +  + G I+ AE   K    
Sbjct: 533 GVLSACSRAGLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPL 592

Query: 518 PVDVISWNSLIAG 530
             D + W +L++ 
Sbjct: 593 EADGVVWGALLSA 605



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 123/480 (25%), Positives = 219/480 (45%), Gaps = 70/480 (14%)

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL 317
           Q  +  +++ N  I+ Y ++ +++ A +LF +MP+R  VSW TMI  Y +  +  EA  L
Sbjct: 26  QSNLSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFL 85

Query: 318 LDQMPYKNIAAQTAMISG---------------YVQNKRMDEANQIFDKIGTHDVVCWNV 362
           +  M   ++    +  S                 +    +   ++ F+ +G+        
Sbjct: 86  VYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGS-------A 138

Query: 363 MIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
           ++  YA C  + EA  +F  +V ++ V W+ M+ GY     MDDA+ +F +M  RR+ V+
Sbjct: 139 LLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKM-PRRDVVA 197

Query: 423 WNALISGFLQN-EFHLDALKIFVLMTQEGKKADHS-TLACALSACAHLAALQLGRQIHHL 480
           W  LISGF +N +    AL+IF LM + G+   +  T  C + AC  L  L +GR +H L
Sbjct: 198 WTTLISGFSKNGDGCGKALEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGL 257

Query: 481 AIKSGYVNDLFVGNSLITMYAKC-------------------------------GRIQNA 509
            +K G   D  +G +L+  Y +C                               GRI++A
Sbjct: 258 LMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDA 317

Query: 510 ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
           EL+F     ++ +S+N +I GYA+ G   ++ +LFE+M    +         ++S  S  
Sbjct: 318 ELVFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNT----MISVYSRN 373

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM---KIKPNAGI 626
           G +D  L+LFE        +P+   +  MI     +G+ +EA ++   M    I+     
Sbjct: 374 GEIDKALELFEETKN--EKDPVT--WNSMISGYIHSGQPEEALKLYITMHRLSIQQTQST 429

Query: 627 WGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCY--ALLSNMHAEAGRWDEVEKVRVSM 684
           +  L  AC    ++  G++    L +  P +++ Y    L +M+++ G   E +   VS+
Sbjct: 430 FSALFHACSCLGSLHQGQLLHAHLIK-TPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSI 488



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 160/321 (49%), Gaps = 18/321 (5%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I  L   GR+E+A  +F+ M++ N V+YN MI  YA  G+++D+++LFE+MP R + 
Sbjct: 302 NSLIEGLISMGRIEDAELVFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIF 361

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM-FRPDLFSWALMITCYTRKGELEKARELF---DLL 134
           S N+MI+ Y  N ++ +A ELF++     D  +W  MI+ Y   G+ E+A +L+     L
Sbjct: 362 SSNTMISVYSRNGEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRL 421

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAK----KLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
             ++  + ++A+    + +G+ ++ +     L+      N+    S++  Y+K G +  A
Sbjct: 422 SIQQTQSTFSALFHACSCLGSLHQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEA 481

Query: 191 SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARN 246
              F ++   +V +W  +++G+        A   F ++ EQ    N  ++V +LS  +R 
Sbjct: 482 QTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLFDRMIEQGLAPNGATFVGVLSACSRA 541

Query: 247 GRMLEARRLFDQM----PIRNVVAWNAMIAAYVQR-GQIEEAARLFIEMP-ERNPVSWTT 300
           G + E  ++F  M     +   +   A +   + R G I EA     +MP E + V W  
Sbjct: 542 GLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGA 601

Query: 301 MIDGYVRIAKLDEARRLLDQM 321
           ++        L+   R+ ++M
Sbjct: 602 LLSACWFWMDLEVGERVAEKM 622


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/630 (34%), Positives = 340/630 (53%), Gaps = 62/630 (9%)

Query: 170 NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL----DDLDSAWKFF 225
           N V W   + GY KNG  + A + +  M+   +    L+    ++      DL +  K  
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143

Query: 226 QKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIE 281
           + I     E +V+    + S Y + G +  AR++FD+MP R+VV+WNA+IA Y Q GQ  
Sbjct: 144 EDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPY 203

Query: 282 EAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG-- 335
           EA  LF EM     + N  +  +++     +  L++ +++        I +   +++G  
Sbjct: 204 EALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLV 263

Query: 336 --YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI----- 388
             Y +   ++ A+++F+++   DV  WN +I GY+   +  EA+  F +M  + I     
Sbjct: 264 NMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSI 323

Query: 389 ----------------------------------VTWNTMIAGYAQIRQMDDAVKIFEEM 414
                                             V  N ++  YA+   ++ A K+FE M
Sbjct: 324 TMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERM 383

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
            K+ N V+WNA+ISG+ Q+    +AL +F+ M  +G K D   +   L ACAH  AL+ G
Sbjct: 384 PKK-NVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQG 442

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
           +QIH   I+SG+ +++ VG  L+ +YAKCG +  A+ LF+     DV+SW ++I  Y I+
Sbjct: 443 KQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIH 502

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEH 594
           G+  +A+ LF +M   G   D + F  +L+ACSH GLVD GL+ F+CM   Y + P +EH
Sbjct: 503 GHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEH 562

Query: 595 YACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE 654
           YAC++DLL RAG LDEA  ++K M ++P+A +WG LLGACR+H NI+LG  A + L EL+
Sbjct: 563 YACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELD 622

Query: 655 PQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQ 714
           P     Y LLSN++AEA RW++V K+R  M+  G +KQPGCS + V   + TFL GD   
Sbjct: 623 PDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTH 682

Query: 715 CRTAEICNTLKTLAAQIR------NTPLAV 738
            ++ +I   L+ L  Q+R      NT LA+
Sbjct: 683 PQSEQIYAMLEILYEQMRKAGYVPNTNLAL 712



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 129/452 (28%), Positives = 235/452 (51%), Gaps = 22/452 (4%)

Query: 223 KFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRG 278
           +F Q     N V W   + GY +NG   +A RL+ QM    +    + + ++I A   + 
Sbjct: 75  QFTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQS 134

Query: 279 QIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMIS 334
            ++   ++  ++  R    + +  T +   Y +   L+ AR++ D+MP +++ +  A+I+
Sbjct: 135 DLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIA 194

Query: 335 GYVQNKRMDEANQIFDKIGTHDV-VCWNVMIKGYAQCGRM-----DEAINLF--RQMVNK 386
           GY QN +  EA  +F ++  + +    + ++     C  +      + I+ +  R  +  
Sbjct: 195 GYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIES 254

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446
           D++  N ++  YA+   ++ A K+FE M   R+  SWNA+I G+  N  H +AL  F  M
Sbjct: 255 DVLVVNGLVNMYAKCGNVNTAHKLFERM-PIRDVASWNAIIGGYSLNSQHHEALAFFNRM 313

Query: 447 TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI 506
              G K +  T+   L ACAHL AL+ G+QIH  AI+SG+ ++  VGN+L+ MYAKCG +
Sbjct: 314 QVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNV 373

Query: 507 QNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
            +A  LF+     +V++WN++I+GY+ +G+  EA+ LF EM  +G+ PD    + VL AC
Sbjct: 374 NSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPAC 433

Query: 567 SHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGI 626
           +H   ++ G K     T     E  V     ++D+ ++ G ++ A ++ + M  + +   
Sbjct: 434 AHFLALEQG-KQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMP-EQDVVS 491

Query: 627 WGTLLGACRMHQNIKLGRIAVEKLSELEPQKT 658
           W T++ A  +H +   G  A+   S+++   T
Sbjct: 492 WTTMILAYGIHGH---GEDALALFSKMQETGT 520



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 114/456 (25%), Positives = 216/456 (47%), Gaps = 67/456 (14%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           I ++  + + +   ++ S Y K G + +AR++F++MP+R++VSWN++IAGY  N +  EA
Sbjct: 146 IIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEA 205

Query: 97  RELFDKM----FRPDLFSWALMITCYTRKGELEKAREL--FDLLPNKE-DTACWNAMVAG 149
             LF +M     +P+  +   ++        LE+ +++  + +    E D    N +V  
Sbjct: 206 LALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNM 265

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV------- 202
           YAK GN N A KL + MP +++ SWN+++ GY+ N + H A  FF  M+ R +       
Sbjct: 266 YAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITM 325

Query: 203 --------------------------------VSWNLMLDGYVELDDLDSAWKFFQKIPE 230
                                           V  N +++ Y +  +++SA+K F+++P+
Sbjct: 326 VSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPK 385

Query: 231 QNVVSWVTMLSGYARNGRMLEARRLF----------DQMPIRNVVAWNAMIAAYVQRGQI 280
           +NVV+W  ++SGY+++G   EA  LF          D   I +V+   A   A  Q  QI
Sbjct: 386 KNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQI 445

Query: 281 EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340
                      E N V  T ++D Y +   ++ A++L ++MP +++ + T MI  Y  + 
Sbjct: 446 H--GYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHG 503

Query: 341 RMDEANQIFDKI---GTH-DVVCWNVMIKGYAQCGRMDEAINLFRQM-----VNKDIVTW 391
             ++A  +F K+   GT  D + +  ++   +  G +D+ +  F+ M     +   +  +
Sbjct: 504 HGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHY 563

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
             ++    +   +D+A  I + M    +   W AL+
Sbjct: 564 ACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALL 599



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 132/542 (24%), Positives = 226/542 (41%), Gaps = 107/542 (19%)

Query: 38  FSQMS-QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL----VSWNSMIAGYLHNDK 92
           F+Q   + N V +   I  Y KNG  N A +L+ QM +  +    + + S+I        
Sbjct: 76  FTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSD 135

Query: 93  VKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVA 148
           ++  R++ + +    F  D+     + + YT+ G LE AR++FD +P K D   WNA++A
Sbjct: 136 LQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMP-KRDVVSWNAIIA 194

Query: 149 GYAKIGNYNEA----------------KKLLDAMP-----------------------SK 169
           GY++ G   EA                  L+  MP                         
Sbjct: 195 GYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIES 254

Query: 170 NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP 229
           +++  N +++ Y K G ++ A K FE M  RDV SWN ++ GY        A  FF ++ 
Sbjct: 255 DVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQ 314

Query: 230 ----EQNVVSWVTMLSG-----------------------------------YARNGRML 250
               + N ++ V++L                                     YA+ G + 
Sbjct: 315 VRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVN 374

Query: 251 EARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSW--TTMIDGYV 306
            A +LF++MP +NVVAWNA+I+ Y Q G   EA  LFIEM  +   P S+   +++    
Sbjct: 375 SAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACA 434

Query: 307 RIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNV 362
               L++ +++    +      N+   T ++  Y +   ++ A ++F+++   DVV W  
Sbjct: 435 HFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTT 494

Query: 363 MIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRR 418
           MI  Y   G  ++A+ LF +M       D + +  ++   +    +D  ++ F+ M    
Sbjct: 495 MILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDY 554

Query: 419 N---TVSWNALISGFLQNEFHLD-ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
                +   A +   L    HLD A  I   M+ E    D +     L AC     ++LG
Sbjct: 555 GLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLE---PDANVWGALLGACRIHCNIELG 611

Query: 475 RQ 476
            Q
Sbjct: 612 EQ 613



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 144/309 (46%), Gaps = 24/309 (7%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           + N V  N++++ YAK G VN A KLFE+MP++N+V+WN++I+GY  +    EA  LF +
Sbjct: 354 ESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIE 413

Query: 103 M----FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGN 155
           M     +PD F+   ++        LE+ +++         + +      +V  YAK GN
Sbjct: 414 MQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGN 473

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDG 211
            N A+KL + MP +++VSW +M+  Y  +G    A   F  M+E     D +++  +L  
Sbjct: 474 VNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTA 533

Query: 212 YVELDDLDSAWKFFQKIPEQ-----NVVSWVTMLSGYARNGRMLEARRLFDQM---PIRN 263
                 +D   ++FQ +         +  +  ++    R G + EA  +   M   P  N
Sbjct: 534 CSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDAN 593

Query: 264 VVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
           V  W A++ A      I   E+AA+   E+   N   +  + + Y    + ++  +L   
Sbjct: 594 V--WGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKM 651

Query: 321 MPYKNIAAQ 329
           M  K +  Q
Sbjct: 652 MKEKGVKKQ 660


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 248/813 (30%), Positives = 418/813 (51%), Gaps = 106/813 (13%)

Query: 14  YVFNQNKKITQLGKSGRVEEAIKIFSQMSQ----KNTVTYNSMISAYAKN-GRVNDARKL 68
           Y F    +  Q       +  ++I   +S+     + V  N +IS Y       NDAR +
Sbjct: 173 YAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSV 232

Query: 69  FEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM--------FRPDLFSWALMIT---- 116
           F+ +  RN +SWNS+I+ Y        A +LF  M        F+P+ +++  +IT    
Sbjct: 233 FDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITTACS 292

Query: 117 ------CYTRK--GELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS 168
                 C   +    +EK+  L DL  +       +A+V+G+A+ G  ++AK + + M  
Sbjct: 293 SVDFGLCVLEQMLARVEKSGFLQDLYVS-------SALVSGFARFGLTDDAKNIFEQMGV 345

Query: 169 KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV-----SWNLMLDGYVELDDLDSAWK 223
           +N+VS N ++ G  K  +   A+K F  M  +D+V     S+ ++L  + E   L+   +
Sbjct: 346 RNVVSMNGLMVGLVKQKQGEAAAKVFHEM--KDLVGINSDSYVVLLSAFSEFSVLEEGRR 403

Query: 224 FFQKIPEQNVVSWVT---------MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
             +++    + + +          +++ YA++G + +A  +F+ M  ++ V+WN++I+  
Sbjct: 404 KGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGL 463

Query: 275 VQRGQIEEAARLFIEMPERNPV-SWTTMIDGYVRIAKL-----------DEARRLLDQMP 322
            Q    E+AA  F  M     + S  T+I      A L           D  +  LD   
Sbjct: 464 DQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLD--- 520

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC-GRMDEAINLFR 381
             +++   A+++ Y +     E  ++F  +  +D V WN +I   +     + +A+  F 
Sbjct: 521 -TDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFL 579

Query: 382 QM---------------------------------------VNKDIVTWNTMIAGYAQIR 402
           QM                                       ++ D    N +++ Y +  
Sbjct: 580 QMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCG 639

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
           +M++  KIF  M + R+ VSWN++ISG++ NE    A+ +   M Q+G++ D  T A  L
Sbjct: 640 EMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATIL 699

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
           SACA +A L+ G ++H   I++   +D+ VG++L+ MY+KCGRI  A   F+     +V 
Sbjct: 700 SACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVY 759

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           SWNS+I+GYA +G+  +A+KLF  M+++G  PD VTF+GVLSACSHVG V+ G + F+ M
Sbjct: 760 SWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSM 819

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA-CRMH-QNI 640
           +EVY + P VEH++CM+DLL RAG+LDE  + +  M +KPN  IW T+LGA CR + +N 
Sbjct: 820 SEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNT 879

Query: 641 KLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEV 700
           +LGR A E L ELEPQ    Y LL+NM+A   +W++V K R +M+ +  +K+ GCSW+ +
Sbjct: 880 ELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTM 939

Query: 701 KNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           K+ +H F++GD        I + L+ L  ++R+
Sbjct: 940 KDGVHVFVAGDKLHPEKDLIYDKLRELNRKMRD 972



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 164/671 (24%), Positives = 314/671 (46%), Gaps = 82/671 (12%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           N    N++I+ Y + G +  A+KLF++M  RNLV+W  +I+GY  N K  EA   F  M 
Sbjct: 105 NLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMV 164

Query: 105 R----PDLFSWALMITCYTRKGE--LEKARELFDLLPNK---EDTACWNAMVAGYAK-IG 154
           R    P+ +++   +      G    +   ++  L+       D    N +++ Y   + 
Sbjct: 165 RAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLD 224

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE 214
           + N+A+ + D +  +N +SWNS++S Y++ G+   A   F +M +++ + ++   + Y  
Sbjct: 225 SANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSM-QKEGLGFSFKPNEYTF 283

Query: 215 LDDLDSAW-----------KFFQKIPE----QNVVSWVTMLSGYARNGRMLEARRLFDQM 259
              + +A            +   ++ +    Q++     ++SG+AR G   +A+ +F+QM
Sbjct: 284 GSLITTACSSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQM 343

Query: 260 PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER---NPVSWTTMIDGYVRIAKLDEARR 316
            +RNVV+ N ++   V++ Q E AA++F EM +    N  S+  ++  +   + L+E RR
Sbjct: 344 GVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVVLLSAFSEFSVLEEGRR 403

Query: 317 ---------LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367
                    +   +    +A    +++ Y ++  + +A  +F+ +   D V WN +I G 
Sbjct: 404 KGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGL 463

Query: 368 AQCGRMDEAINLFRQM---------------------------------------VNKDI 388
            Q    ++A   F +M                                       ++ D+
Sbjct: 464 DQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDV 523

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD-ALKIFVLMT 447
              N ++A YA+     + +K+F  M    + VSWN++I     +E  +  A+K F+ M 
Sbjct: 524 SVSNALLALYAETGCFTECLKVFSLM-PEYDQVSWNSVIGALSDSEASVSQAVKYFLQMM 582

Query: 448 QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
           + G      T    LSA + L+  ++  QIH L +K    +D  +GN+L++ Y KCG + 
Sbjct: 583 RGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMN 642

Query: 508 NAELLF-KDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
             E +F + ++  D +SWNS+I+GY  N    +A+ L   M+ +G   D  TF  +LSAC
Sbjct: 643 ECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSAC 702

Query: 567 SHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGI 626
           + V  ++ G+++  C      +E  V   + ++D+ S+ GR+D A    + M ++ N   
Sbjct: 703 ASVATLERGMEVHACGIRA-CLESDVVVGSALVDMYSKCGRIDYASRFFELMPLR-NVYS 760

Query: 627 WGTLLGACRMH 637
           W +++     H
Sbjct: 761 WNSMISGYARH 771



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 143/539 (26%), Positives = 257/539 (47%), Gaps = 52/539 (9%)

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLL 134
           ++ S+I  Y  +   +EAREL  +     F  +LF    +I  Y R G+L  A++LFD +
Sbjct: 73  TFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEM 132

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEA----KKLLDAMPSKNIVSWNSMLSGYTKNGE---- 186
            N+ +   W  +++GY + G  +EA    + ++ A    N  ++ S L    ++G     
Sbjct: 133 SNR-NLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCK 191

Query: 187 --MHLASKFFEAMEERDVVSWNLMLDGYVE-LDDLDSAWKFFQKIPEQNVVSWVTMLSGY 243
             + +     +     DVV  N+++  Y   LD  + A   F  I  +N +SW +++S Y
Sbjct: 192 LGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVY 251

Query: 244 ARNGRMLEARRLFDQMPIR--------NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
           +R G  + A  LF  M           N   + ++I        ++    +  +M  R  
Sbjct: 252 SRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITTAC--SSVDFGLCVLEQMLARVE 309

Query: 296 VSW--------TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347
            S         + ++ G+ R    D+A+ + +QM  +N+ +   ++ G V+ K+ + A +
Sbjct: 310 KSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAK 369

Query: 348 IFDKIGTHDVVCWN-----VMIKGYAQCGRMDEA--------INLFRQMVNKD-IVTWNT 393
           +F ++   D+V  N     V++  +++   ++E          ++ R  +N + +   N 
Sbjct: 370 VFHEM--KDLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNG 427

Query: 394 MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA 453
           ++  YA+   + DA  +FE M + +++VSWN+LISG  QNE   DA + F  M + G   
Sbjct: 428 LVNMYAKSGAIADACSVFELMVE-KDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMP 486

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
            + TL   LS+CA L  + LG QIH   +K G   D+ V N+L+ +YA+ G       +F
Sbjct: 487 SNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVF 546

Query: 514 KDADPVDVISWNSLIAGYAIN-GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
                 D +SWNS+I   + +  + ++A+K F +M+  G     VTFI +LSA S + L
Sbjct: 547 SLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSL 605



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 107/444 (24%), Positives = 211/444 (47%), Gaps = 40/444 (9%)

Query: 10  NKGSYV-----FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND 64
           N  SYV     F++   + +  + GR   A  I + ++       N +++ YAK+G + D
Sbjct: 381 NSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIAD 440

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTR 120
           A  +FE M +++ VSWNS+I+G   N+  ++A E F +M R    P  F+    ++    
Sbjct: 441 ACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCAS 500

Query: 121 KGELEKARELF-DLLPNKEDT--ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSM 177
            G +    ++  D L    DT  +  NA++A YA+ G + E  K+   MP  + VSWNS+
Sbjct: 501 LGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSV 560

Query: 178 LSGYTKN-GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQN--VV 234
           +   + +   +  A K+F  M       W L    ++ +    S+    +   + +  V+
Sbjct: 561 IGALSDSEASVSQAVKYFLQMMRG---GWGLSRVTFINILSAVSSLSLHEVSHQIHALVL 617

Query: 235 SWV---------TMLSGYARNGRMLEARRLFDQMP-IRNVVAWNAMIAAYVQRGQIEEAA 284
            +           +LS Y + G M E  ++F +M   R+ V+WN+MI+ Y+    + +A 
Sbjct: 618 KYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAM 677

Query: 285 RLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGY 336
            L   M ++    +  ++ T++     +A L+    +    +      ++   +A++  Y
Sbjct: 678 DLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIRACLESDVVVGSALVDMY 737

Query: 337 VQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV----NKDIVTWN 392
            +  R+D A++ F+ +   +V  WN MI GYA+ G  ++A+ LF +M+      D VT+ 
Sbjct: 738 SKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFV 797

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGK 416
            +++  + +  +++  + F+ M +
Sbjct: 798 GVLSACSHVGFVEEGFEHFKSMSE 821



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 2/105 (1%)

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
            R++H  +IK G+V +LF+ N+LI +Y + G + +A+ LF +    ++++W  LI+GY  
Sbjct: 90  ARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQ 149

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
           NG   EA   F +MV  G  P+   F   L AC   G    G KL
Sbjct: 150 NGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESG--PSGCKL 192


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 237/748 (31%), Positives = 392/748 (52%), Gaps = 43/748 (5%)

Query: 24  QLGKSGRVEEAIKIFSQMSQK----NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVS 79
           +L K+GR++EAI++   + Q+    N+ TY  +I   AK  R  D + + +Q+ +  L  
Sbjct: 52  RLCKAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAI 111

Query: 80  ----WNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL- 134
                NS+I  Y     V    ++F +M   D+ +W+ MI  Y       KA + F+ + 
Sbjct: 112 DIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMK 171

Query: 135 -----PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNGEMH 188
                PN+            Y+ +    E   ++ A     ++    ++++ Y+K GE+ 
Sbjct: 172 DANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEIS 231

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYA 244
           LA + F+ M+ER+VVSW  ++    +   L+ A++ ++K+ +     N V++V++L+   
Sbjct: 232 LACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCN 291

Query: 245 RNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTT 300
               +   RR+   +  R    +VV  NA+I  Y +   I++A   F  M +R+ +SW+ 
Sbjct: 292 TPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSA 351

Query: 301 MIDGYVRIA-----KLDEARRLLDQMP----YKNIAAQTAMISGYVQNKRMDEANQI--- 348
           MI GY +        LDE  +LL++M     + N     +++     +  +++  QI   
Sbjct: 352 MIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAE 411

Query: 349 FDKIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDA 407
             K+G   D      +   YA+CG + EA  +F +M NK++V W +++  Y +   +  A
Sbjct: 412 ISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSA 471

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ---EGKKADHSTLACALSA 464
            K+F EM  R N VSWN +I+G+ Q+    D  K+F L++    EG + D  T+   L A
Sbjct: 472 EKVFSEMSTR-NVVSWNLMIAGYAQSG---DIAKVFELLSSMKVEGFQPDRVTIISILEA 527

Query: 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
           C  L+AL+ G+ +H  A+K G  +D  V  SLI MY+KCG +  A  +F      D ++W
Sbjct: 528 CGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAW 587

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           N+++AGY  +G   EA+ LF+ M+ E V P+ +TF  V+SAC   GLV  G ++F  M E
Sbjct: 588 NAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQE 647

Query: 585 VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
            + ++P  +HY CM+DLL RAGRL EA E ++ M  +P+  +W  LLGAC+ H N++L  
Sbjct: 648 DFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAE 707

Query: 645 IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQI 704
            A   +  LEP   S Y  LSN++A+AGRWD+  KVR  M+  G +K  G S IE+  +I
Sbjct: 708 WAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRI 767

Query: 705 HTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           HTF++ D        I   L+ L  +++
Sbjct: 768 HTFVAEDCAHPEIDSIHAELEMLTKEMK 795



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 139/599 (23%), Positives = 278/599 (46%), Gaps = 86/599 (14%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           ++  N  I    K G V    ++F +M+ ++ VT++SMI+AYA N     A   FE+M  
Sbjct: 113 IYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKD 172

Query: 75  RNL----VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEK 126
            N+    +++ S++    +   +++ARE+   +       D+     +IT Y++ GE+  
Sbjct: 173 ANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISL 232

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA----KKLLDAMPSKNIVSWNSMLSGYT 182
           A E+F  +  + +   W A++   A+    NEA    +K+L A  S N V++ S+L+   
Sbjct: 233 ACEIFQKMKER-NVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCN 291

Query: 183 KNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
               ++   +    + ER    DVV  N ++  Y + + +  A + F ++ +++V+SW  
Sbjct: 292 TPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSA 351

Query: 239 MLSGYARNG-----------RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF 287
           M++GYA++G           ++LE  R     P  N V + +++ A    G +E+  ++ 
Sbjct: 352 MIAGYAQSGYQDKESLDEVFQLLERMRREGVFP--NKVTFMSILKACSVHGALEQGRQIH 409

Query: 288 IEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMD 343
            E+     E +    T + + Y +   + EA ++  +M  KN+ A  ++++ Y++   + 
Sbjct: 410 AEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLT 469

Query: 344 EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-------------------- 383
            A ++F ++ T +VV WN+MI GYAQ G + +   L   M                    
Sbjct: 470 SAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACG 529

Query: 384 -------------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
                              +  D V   ++I  Y++  ++ +A  +F+++   R+TV+WN
Sbjct: 530 ALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISN-RDTVAWN 588

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLA--- 481
           A+++G+ Q+    +A+ +F  M +E    +  T    +SAC     +Q GR+I  +    
Sbjct: 589 AMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQED 648

Query: 482 --IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK--DADPVDVISWNSLIAGYAINGN 536
             +K G  +       ++ +  + GR+Q AE   +    +P D+  W++L+     + N
Sbjct: 649 FRMKPGKQHY----GCMVDLLGRAGRLQEAEEFIQRMPCEP-DISVWHALLGACKSHDN 702


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 233/744 (31%), Positives = 384/744 (51%), Gaps = 73/744 (9%)

Query: 56  YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSW 111
           Y + G + DA+ LF  +      +WN MI G+    +   A   + KM      PD +++
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 112 ALMI--TCYTRKGELEK-ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS 168
             ++   C  +  ++ K   E  +L+  KED    ++++  YA+ G+ ++A+ L D +P 
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQ 121

Query: 169 KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD-------------VVSWNLMLDGYVEL 215
           K+ V WN ML+GY KNG+   A K F  M   +             V +   MLD   +L
Sbjct: 122 KDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQL 181

Query: 216 DDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
             +          P  N     T+L+ Y++   +  AR+LFD +P  ++V+WN +I+ YV
Sbjct: 182 HGIAVGCGLELDSPVAN-----TLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYV 236

Query: 276 QRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIA 327
           Q G + EA  LF  M     + + +++ + +     +  L   + +    +      ++ 
Sbjct: 237 QNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVF 296

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD 387
            ++A+I  Y + + ++ A +   +  + D V    MI GY   G+  EA+  FR +V + 
Sbjct: 297 LKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQER 356

Query: 388 I----VTWNTMIAG-----------------------------------YAQIRQMDDAV 408
           +    VT++++                                      YA+  ++D A 
Sbjct: 357 MKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLAC 416

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
           ++F  +   ++ + WN++I+   QN    +A+ +F  M  EG + D  +++ ALSACA+L
Sbjct: 417 RVFNRI-TEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANL 475

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
            AL  G++IH L IK    +DL+  +SLI MYAKCG +  +  +F      + +SWNS+I
Sbjct: 476 PALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWNSII 535

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI 588
           + Y  +G+  E + LF EM+  G+ PD VTF+G++SAC H G VD G++ +  MTE Y I
Sbjct: 536 SAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGI 595

Query: 589 EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVE 648
              +EHYAC+ D+  RAGRL EAFE +  M   P+AG+WGTLLGAC +H N++L  +A +
Sbjct: 596 PARMEHYACVADMFGRAGRLHEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEVASK 655

Query: 649 KLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFL 708
            L +L+P  +  Y LL+N+ A AG+W +V KVR  M+  G +K PG SWIEV N  H F+
Sbjct: 656 HLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRKVPGYSWIEVNNATHMFV 715

Query: 709 SGDPKQCRTAEICNTLKTLAAQIR 732
           + D     TA+I + L +L  +++
Sbjct: 716 AADGSHPLTAQIYSVLDSLLLELK 739



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 142/562 (25%), Positives = 257/562 (45%), Gaps = 65/562 (11%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           +++    +S+I  YA+NG ++DA+ LF+ +PQ++ V WN M+ GY+ N     A ++F +
Sbjct: 90  KEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLE 149

Query: 103 M----FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGN 155
           M     +P+  ++A +++    +  L+   +L  +      + D+   N ++A Y+K   
Sbjct: 150 MRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQC 209

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSWNLMLDG 211
              A+KL D +P  ++VSWN ++SGY +NG M  A   F  M     + D +++   L  
Sbjct: 210 LQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPC 269

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSG----YARNGRMLEARRLFDQMPIRNVVAW 267
             EL  L    +    I    VV  V + S     Y +   +  A++   Q    + V  
Sbjct: 270 VNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVC 329

Query: 268 NAMIAAYVQRGQIEEAARLF----IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
             MI+ YV  G+ +EA   F     E  +   V+++++   +  +A L+  + L   +  
Sbjct: 330 TTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIK 389

Query: 324 KNIAAQ----TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
             +  +    +A++  Y +  R+D A ++F++I   D +CWN MI   +Q GR  EAINL
Sbjct: 390 TKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINL 449

Query: 380 FRQM---------------------------------------VNKDIVTWNTMIAGYAQ 400
           FRQM                                       +  D+   +++I  YA+
Sbjct: 450 FRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAK 509

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
              ++ + ++F+ M + +N VSWN++IS +  +    + L +F  M + G + DH T   
Sbjct: 510 CGNLNFSRRVFDRM-QEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLG 568

Query: 461 ALSACAHLAALQLGRQIHHLAIKS-GYVNDLFVGNSLITMYAKCGRIQNA-ELLFKDADP 518
            +SAC H   +  G + +HL  +  G    +     +  M+ + GR+  A E +     P
Sbjct: 569 IISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLHEAFETINSMPFP 628

Query: 519 VDVISWNSLIAGYAINGNATEA 540
            D   W +L+    I+GN   A
Sbjct: 629 PDAGVWGTLLGACHIHGNVELA 650



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 99/426 (23%), Positives = 191/426 (44%), Gaps = 64/426 (15%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +    K   ++ A K+F  + Q + V++N +IS Y +NG + +A  LF  M    + 
Sbjct: 198 NTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIK 257

Query: 79  SWNSMIAGYLH--ND--KVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKAREL 130
             +   A +L   N+   +K  +E+   + R     D+F  + +I  Y +  ++E A++ 
Sbjct: 258 PDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQK- 316

Query: 131 FDLLPNKE-DTACWNAMVAGYAKIGNYNEAKK----LLDAMPSKNIVSWNSMLSGYTKNG 185
            +L  +   DT     M++GY   G   EA +    L+        V+++S+   +    
Sbjct: 317 -NLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLA 375

Query: 186 EMHLASKFFEA-----MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
            ++L  +   +     ++E+  V  + +LD Y +   LD A + F +I E++ + W +M+
Sbjct: 376 ALNLGKELHGSIIKTKLDEKCHVG-SAILDMYAKCGRLDLACRVFNRITEKDAICWNSMI 434

Query: 241 SGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQI---EEAARLFIEMPER 293
           +  ++NGR  EA  LF QM +     + V+ +  ++A      +   +E   L I+ P R
Sbjct: 435 TSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLR 494

Query: 294 NPV-SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
           + + + +++ID Y +   L+ +RR+ D                     RM E N+     
Sbjct: 495 SDLYAESSLIDMYAKCGNLNFSRRVFD---------------------RMQEKNE----- 528

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAV 408
                V WN +I  Y   G + E + LF +M    +  D VT+  +I+      Q+D+ +
Sbjct: 529 -----VSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGI 583

Query: 409 KIFEEM 414
           + +  M
Sbjct: 584 RYYHLM 589



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 153/335 (45%), Gaps = 28/335 (8%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF ++  I    K   VE A K   Q S  +TV   +MIS Y  NG+  +A + F  + Q
Sbjct: 295 VFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQ 354

Query: 75  RNL----VSWNSMIAGYLHNDKVKEARELFDKMFRPDL----FSWALMITCYTRKGELEK 126
             +    V+++S+   +     +   +EL   + +  L       + ++  Y + G L+ 
Sbjct: 355 ERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDL 414

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSMLSGYT 182
           A  +F+ +  K D  CWN+M+   ++ G   EA  L   M  +    + VS +  LS   
Sbjct: 415 ACRVFNRITEK-DAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACA 473

Query: 183 KNGEMHLASKFFEAMEE----RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
               +H   +    M +     D+ + + ++D Y +  +L+ + + F ++ E+N VSW +
Sbjct: 474 NLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWNS 533

Query: 239 MLSGYARNGRMLEARRLFDQMPIRN-----VVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           ++S Y  +G + E   LF +M +RN      V +  +I+A    GQ++E  R +  M E 
Sbjct: 534 IISAYGNHGDLKECLALFHEM-LRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEE 592

Query: 294 NPVS-----WTTMIDGYVRIAKLDEARRLLDQMPY 323
             +      +  + D + R  +L EA   ++ MP+
Sbjct: 593 YGIPARMEHYACVADMFGRAGRLHEAFETINSMPF 627



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 122/270 (45%), Gaps = 40/270 (14%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM----PQRNLVSWNS 82
           K GR++ A ++F+++++K+ + +NSMI++ ++NGR  +A  LF QM     + + VS + 
Sbjct: 408 KCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISG 467

Query: 83  MIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
            ++   +   +   +E+   M     R DL++ + +I  Y + G L  +R +FD +  K 
Sbjct: 468 ALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKN 527

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASKFF 194
           + + WN++++ Y   G+  E   L   M    I    V++  ++S     G++    +++
Sbjct: 528 EVS-WNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYY 586

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
             M E   +     ++ Y  + D+                        + R GR+ EA  
Sbjct: 587 HLMTEEYGIPAR--MEHYACVADM------------------------FGRAGRLHEAFE 620

Query: 255 LFDQMPI-RNVVAWNAMIAAYVQRGQIEEA 283
             + MP   +   W  ++ A    G +E A
Sbjct: 621 TINSMPFPPDAGVWGTLLGACHIHGNVELA 650



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/330 (21%), Positives = 138/330 (41%), Gaps = 87/330 (26%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNT-------------------------------- 46
           N  IT   ++GR  EAI +F QM  + T                                
Sbjct: 431 NSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIK 490

Query: 47  -------VTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEAREL 99
                     +S+I  YAK G +N +R++F++M ++N VSWNS+I+ Y ++  +KE   L
Sbjct: 491 GPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLAL 550

Query: 100 FDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPNK-------EDTACWNAMVA 148
           F +M R    PD  ++  +I+     G++++    + L+  +       E  AC   M  
Sbjct: 551 FHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADM-- 608

Query: 149 GYAKIGNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL 207
            + + G  +EA + +++MP   +   W ++L     +G + LA          +V S +L
Sbjct: 609 -FGRAGRLHEAFETINSMPFPPDAGVWGTLLGACHIHGNVELA----------EVASKHL 657

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
                 +LD L+S +           V    + +G  +  ++L+ R +  +  +R V  +
Sbjct: 658 F-----DLDPLNSGY----------YVLLANVQAGAGKWRKVLKVRSIMKERGVRKVPGY 702

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
           + +        ++  A  +F+     +P++
Sbjct: 703 SWI--------EVNNATHMFVAADGSHPLT 724



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 82/178 (46%), Gaps = 14/178 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S ++ ++  I    K G +  + ++F +M +KN V++NS+ISAY  +G + +   LF +M
Sbjct: 495 SDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLALFHEM 554

Query: 73  ----PQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGE 123
                Q + V++  +I+   H  +V E    +  M         +  +A +   + R G 
Sbjct: 555 LRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGR 614

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
           L +A E  + +P   D   W  ++      GN   A+     + SK++   + + SGY
Sbjct: 615 LHEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAE-----VASKHLFDLDPLNSGY 667



 Score = 47.8 bits (112), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 84/175 (48%), Gaps = 4/175 (2%)

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           MY + G +++A+ LF         +WN +I G+ + G    A+  + +M+  GV+PD  T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
           F  V+ AC  +  V  G K+      +  ++  V   + +I L +  G L +A  +   +
Sbjct: 61  FPYVVKACCGLKSVKMG-KIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 619 KIKPNAGIWGTLL-GACRMHQNIKLGRIAVE-KLSELEPQKTSCYALLSNMHAEA 671
             K ++ +W  +L G  +   +    +I +E + SE++P   +   +LS   +EA
Sbjct: 120 PQK-DSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEA 173


>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1028

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 245/799 (30%), Positives = 395/799 (49%), Gaps = 102/799 (12%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM----PQRNL 77
           +    K  R+ +A ++F  +   NTV +  + S Y K G   +A  +FE+M     + + 
Sbjct: 202 VDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRGEGHRPDH 261

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF------ 131
           +++ ++I  Y+   K+K+AR LF +M  PD+ +W +MI+ + ++G    A E F      
Sbjct: 262 LAFVTVINTYISLGKLKDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKS 321

Query: 132 ----------------------DL----------LPNKEDTACWNAMVAGYAKIGNYNEA 159
                                 DL          L    +    +++V+ Y+K      A
Sbjct: 322 SVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAA 381

Query: 160 KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVEL 215
            K+ +A+  +N V WN+M+ GY  NGE H   + F  M+      D  ++  +L      
Sbjct: 382 AKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVS 441

Query: 216 DDLDSAWKF----FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
            DL+   +F     +K   +N+     ++  YA+ G + +AR++F+ M  R+ V+WN +I
Sbjct: 442 HDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDNVSWNTII 501

Query: 272 AAYVQRGQIEEAARLFIEMPERNPVS---------------------------------- 297
             YVQ     EA  LF+ M     VS                                  
Sbjct: 502 GGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQVHCLSVKCGLD 561

Query: 298 -----WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
                 +++ID Y +   +++AR++   MP  ++ +  A+I+GY QN  ++EA  +F ++
Sbjct: 562 RVLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGYSQNN-LEEAVVLFQEM 620

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWN----------TMIAGYAQIR 402
            T  V    +      +     E++ L  Q  +  I+ W           +++  Y   R
Sbjct: 621 LTKGVNPSEITFATIVEACHKPESLTLGTQF-HGQIIKWGFSSEGEYLGISLLGLYMNSR 679

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
           +M +A  +F E+   ++ V W  ++SG  QN F+ +ALK +  M  +G   D +T    L
Sbjct: 680 RMAEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVL 739

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP-VDV 521
             C+ L++L+ GR IH L     +  D    N+LI MYAKCG ++++  +F +     +V
Sbjct: 740 RVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKSSSQVFDEMRRRSNV 799

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC 581
           +SWNSLI GYA NG A +A+K+F+ M    + PD +TF+GVL+ACSH G V  G K+FE 
Sbjct: 800 VSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEM 859

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIK 641
           M   Y IE  V+H ACM+DLL R G L EA + ++   +KP+A +W +LLGACR+H +  
Sbjct: 860 MIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDM 919

Query: 642 LGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVK 701
            G IA E+L ELEPQ +S Y LLSN++A  GRW+E   +R +M   G +K PG SWI+V 
Sbjct: 920 RGEIAAERLIELEPQNSSAYVLLSNIYASQGRWEEANALRKAMRDRGVKKVPGYSWIDVG 979

Query: 702 NQIHTFLSGDPKQCRTAEI 720
            + H F +GD       +I
Sbjct: 980 QRRHIFAAGDQSHSDIGKI 998



 Score =  226 bits (575), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 157/578 (27%), Positives = 282/578 (48%), Gaps = 98/578 (16%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDK----VKEARELFDKMFR 105
           N+++  YAK  +V+ A K F  + ++++ +WNSM++ Y    +    ++    LF+ +  
Sbjct: 99  NAIVDLYAKCAQVSYAEKQFNSL-EKDVTAWNSMLSMYSSIGQPGKVLRSFVSLFENLIF 157

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL 162
           P+ F+++++++   R+  +E  R++   +     + ++ C  A+V  YAK     +A+++
Sbjct: 158 PNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRLGDAQRV 217

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAW 222
            D +   N                                V W  +  GYV+    + A 
Sbjct: 218 FDGIVDPN-------------------------------TVCWTCLFSGYVKAGLPEEAV 246

Query: 223 KFFQKIPEQ----NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
             F+++  +    + +++VT+++ Y   G++ +AR LF +MP  +VVAWN MI+ + +RG
Sbjct: 247 IVFERMRGEGHRPDHLAFVTVINTYISLGKLKDARLLFGEMPSPDVVAWNVMISGHGKRG 306

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVR----IAKLD-------EARRLLDQMPYKNIA 327
               A   F+ M + +  S  + +   +     +A LD       EA +L       NI 
Sbjct: 307 CEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKL---GLASNIY 363

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM---- 383
             ++++S Y + ++M+ A ++F+ +   + V WN MI+GYA  G   + + LF  M    
Sbjct: 364 VGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSG 423

Query: 384 -----------------------------------VNKDIVTWNTMIAGYAQIRQMDDAV 408
                                              + K++   N ++  YA+   ++DA 
Sbjct: 424 YNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDAR 483

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
           +IFE M  R N VSWN +I G++Q+E   +A  +F+ M   G  +D + LA  L AC ++
Sbjct: 484 QIFEHMCDRDN-VSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNV 542

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
             L  G+Q+H L++K G    L  G+SLI MY+KCG I++A  +F       V+S N+LI
Sbjct: 543 HGLYQGKQVHCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALI 602

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
           AGY+ N N  EA+ LF+EM+ +GV P  +TF  ++ AC
Sbjct: 603 AGYSQN-NLEEAVVLFQEMLTKGVNPSEITFATIVEAC 639



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 145/339 (42%), Gaps = 50/339 (14%)

Query: 310 KLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ 369
           KL ++R++ D+MP++   A    I   V +K +        ++G       N ++  YA+
Sbjct: 57  KLFKSRKVFDEMPHR--LALALRIGKAVHSKSLILGIDSEGRLG-------NAIVDLYAK 107

Query: 370 CGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
           C ++  A   F  +  KD+  WN+M++ Y+ I Q    ++ F  +        +  LI  
Sbjct: 108 CAQVSYAEKQFNSL-EKDVTAWNSMLSMYSSIGQPGKVLRSFVSL--------FENLI-- 156

Query: 430 FLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND 489
              N+F                     T +  LS  A    ++ GRQIH   IK G   +
Sbjct: 157 -FPNKF---------------------TFSIVLSTSARETNVEFGRQIHCSMIKMGLERN 194

Query: 490 LFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549
            + G +L+ MYAKC R+ +A+ +F      + + W  L +GY   G   EA+ +FE M  
Sbjct: 195 SYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRG 254

Query: 550 EGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLD 609
           EG  PD + F+ V++    +G +     LF  M       P V  +  MI    + G   
Sbjct: 255 EGHRPDHLAFVTVINTYISLGKLKDARLLFGEMP-----SPDVVAWNVMISGHGKRGCEI 309

Query: 610 EAFEMVKGMK---IKPNAGIWGTLLGACRMHQNIKLGRI 645
            A E    M+   +K      G++L A  +  N+ LG +
Sbjct: 310 VAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLV 348



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 28/179 (15%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQK----NTVTYNSMISAYAKNGRVNDARKL 68
           S V + N  I    K+G  E+A+KIF  M Q     + +T+  +++A +  G+V+D RK+
Sbjct: 797 SNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKI 856

Query: 69  FEQM-PQRNLVSWNSMIA---------GYLHN-DKVKEARELFDKMFRPDLFSW-ALMIT 116
           FE M  Q  + +    +A         GYL   D   EA+ L     +PD   W +L+  
Sbjct: 857 FEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNL-----KPDARLWSSLLGA 911

Query: 117 CYTR----KGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI 171
           C       +GE+   R L +L P  ++++ +  +   YA  G + EA  L  AM  + +
Sbjct: 912 CRIHGDDMRGEIAAER-LIELEP--QNSSAYVLLSNIYASQGRWEEANALRKAMRDRGV 967


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 225/657 (34%), Positives = 365/657 (55%), Gaps = 42/657 (6%)

Query: 94  KEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAG 149
           ++AR +  ++    F  ++F    +I  Y + G L+ AR++FD +  + +   +N++++ 
Sbjct: 41  RDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMSER-NVFSFNSIIST 99

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV----SW 205
             + G  +E+  L   MP K+  SWNSM++G+ ++     A  +F  M   D V    S+
Sbjct: 100 LMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSF 159

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG----YARNGRMLEARRLFDQMPI 261
              L     L DL    +    I +      V M SG    Y++ G +  ARR+FD M  
Sbjct: 160 GSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEE 219

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           +NVV+WN +I  Y Q G   EA   F  M E           G+             D++
Sbjct: 220 KNVVSWNCLITCYEQNGPAIEALEAFGRMTEL----------GFKP-----------DEV 258

Query: 322 PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
              ++ +  A ++ + +  ++       DK   +D++  N ++  YA+CGR++EA  +F 
Sbjct: 259 TLASVVSACATLAAFKEGVQIHARVVKSDKF-RNDLILGNALVDMYAKCGRVNEARCVFD 317

Query: 382 QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALK 441
           +M  ++ V+  TM++GYA+   +  A  +F  + K+++ VSWNALI+G+ QN  + +AL 
Sbjct: 318 RMPVRNAVSETTMVSGYAKSASVKAARSMFATI-KQKDIVSWNALIAGYTQNGENEEALG 376

Query: 442 IFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV------NDLFVGNS 495
           +F ++ +E     H T    L+A A+LA L+LGRQ H   +K G+        D+FVGNS
Sbjct: 377 LFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNS 436

Query: 496 LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555
           LI MY KCG ++    +F++    D +SWN++I GYA NG   EA++LF++M+  G  PD
Sbjct: 437 LIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPD 496

Query: 556 PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV 615
            VT IG L ACSH GLV+ G + F  MT+ + + P+ +HY CM+DLL RAG L+EA +++
Sbjct: 497 HVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLI 556

Query: 616 KGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWD 675
           + M  +P+A +W +LL AC++H+NI LG+   EK+ E++P  +  Y LL+NM++E GRW 
Sbjct: 557 ESMPKQPDAVVWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWG 616

Query: 676 EVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +   VR  M   G  KQPGCSWI++++ +H F+  D +  +  EI + LK L   +R
Sbjct: 617 DAVSVRKLMRRRGVVKQPGCSWIDIQSNVHVFMVKDKRHPQKKEIYSILKLLTKHMR 673



 Score =  219 bits (557), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 162/591 (27%), Positives = 277/591 (46%), Gaps = 116/591 (19%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF QN+ I   GK G ++ A K+F +MS++N  ++NS+IS   + G V+++  LF  MP+
Sbjct: 59  VFIQNRLIDVYGKCGYLDYARKVFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPE 118

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL----FSWALMITCYTRKGELEKAREL 130
           ++  SWNSMIAG+  +D+ +EA + F +M R D     +S+   ++  +R  +L+   ++
Sbjct: 119 KDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQI 178

Query: 131 FDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG-- 185
             L+   +   D    + ++  Y+K G    A+++ D M  KN+VSWN +++ Y +NG  
Sbjct: 179 HGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPA 238

Query: 186 ------------------EMHLAS---------KFFEAME-----------ERDVVSWNL 207
                             E+ LAS          F E ++             D++  N 
Sbjct: 239 IEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNA 298

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
           ++D Y +   ++ A   F ++P +N VS  TM+SGYA++  +  AR +F  +  +++V+W
Sbjct: 299 LVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSW 358

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
           NA+IA Y Q G+ EEA  LF  M +R  V  T    G +  A  + A   L +  + ++ 
Sbjct: 359 NALIAGYTQNGENEEALGLF-RMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVV 417

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD 387
                  G+            F      D+   N +I  Y +CG ++E + +F  MV KD
Sbjct: 418 KH-----GFR-----------FQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKD 461

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMT 447
            V+WNTMI GYA                                QN + ++AL++F  M 
Sbjct: 462 HVSWNTMIIGYA--------------------------------QNGYGMEALELFQKML 489

Query: 448 QEGKKADHSTLACALSACAHLAALQLGRQIHH--------LAIKSGYVNDLFVGNSLITM 499
           + G+K DH T+   L AC+H   ++ GR+           L +K  Y         ++ +
Sbjct: 490 ESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHY-------TCMVDL 542

Query: 500 YAKCGRIQNAELLFKD-ADPVDVISWNSLIAGYAINGNAT----EAIKLFE 545
             + G ++ A+ L +      D + W+SL++   ++ N T     A K+FE
Sbjct: 543 LGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLGKYVAEKIFE 593



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 131/436 (30%), Positives = 216/436 (49%), Gaps = 54/436 (12%)

Query: 244 ARNGRMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMI 302
           +R+ R +  R +  Q P    V   N +I  Y + G ++ A ++F  M ERN  S+ ++I
Sbjct: 40  SRDARSVHGRLI--QTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMSERNVFSFNSII 97

Query: 303 DGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNV 362
              +R   +DE+  L   MP K+  +  +MI+G+ Q+ R +EA   F ++   D V  + 
Sbjct: 98  STLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDY 157

Query: 363 MI-KGYAQCGRMDEAINLFRQ---MVNK-----DIVTWNTMIAGYAQIRQMDDAVKIFEE 413
               G + C R+ + + L  Q   +++K     D+   + +I  Y++   +  A ++F+ 
Sbjct: 158 SFGSGLSACSRLKD-LKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDG 216

Query: 414 MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQL 473
           M + +N VSWN LI+ + QN   ++AL+ F  MT+ G K D  TLA  +SACA LAA + 
Sbjct: 217 M-EEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKE 275

Query: 474 GRQIHHLAIKSG-YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV------------- 519
           G QIH   +KS  + NDL +GN+L+ MYAKCGR+  A  +F D  PV             
Sbjct: 276 GVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVF-DRMPVRNAVSETTMVSGY 334

Query: 520 -------------------DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
                              D++SWN+LIAGY  NG   EA+ LF  +  E V P   TF 
Sbjct: 335 AKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFG 394

Query: 561 GVLSACSHVGLVDGGLKLFECMTE-----VYAIEPLVEHYACMIDLLSRAGRLDEAFEMV 615
            +L+A +++  ++ G +    + +         EP +     +ID+  + G ++E   + 
Sbjct: 395 NLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVF 454

Query: 616 KGMKIKPNAGIWGTLL 631
           + M  K +   W T++
Sbjct: 455 ENMVEKDHVS-WNTMI 469



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 161/328 (49%), Gaps = 36/328 (10%)

Query: 298 WTTMIDGYVRIAKLDEARRL---LDQMPY-KNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
           +  ++D  V++    +AR +   L Q P+ + +  Q  +I  Y +   +D A ++FD++ 
Sbjct: 27  FAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMS 86

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEE 413
             +V  +N +I    + G +DE+  LF  M  KD  +WN+MIAG+AQ  + ++A+  F  
Sbjct: 87  ERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVR 146

Query: 414 MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQL 473
           M +             F+ N++                     +    LSAC+ L  L+L
Sbjct: 147 MHR-----------DDFVLNDY---------------------SFGSGLSACSRLKDLKL 174

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           G QIH L  KS Y  D+F+G+ LI  Y+KCG +  A  +F   +  +V+SWN LI  Y  
Sbjct: 175 GAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQ 234

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVE 593
           NG A EA++ F  M   G  PD VT   V+SAC+ +     G+++   + +       + 
Sbjct: 235 NGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLI 294

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMKIK 621
               ++D+ ++ GR++EA  +   M ++
Sbjct: 295 LGNALVDMYAKCGRVNEARCVFDRMPVR 322



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 35/210 (16%)

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
           D S  A  L  C  L + +  R +H   I++ +  ++F+ N LI +Y KCG +  A  +F
Sbjct: 23  DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVF 82

Query: 514 KDADPVDVI-------------------------------SWNSLIAGYAINGNATEAIK 542
                 +V                                SWNS+IAG+A +    EA+ 
Sbjct: 83  DRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALD 142

Query: 543 LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV-YAIEPLVEHYACMIDL 601
            F  M  +    +  +F   LSACS +  +  G ++   +++  Y+++  +   + +ID 
Sbjct: 143 WFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMG--SGLIDF 200

Query: 602 LSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
            S+ G +  A  +  GM+ K N   W  L+
Sbjct: 201 YSKCGLVGCARRVFDGMEEK-NVVSWNCLI 229


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 232/713 (32%), Positives = 382/713 (53%), Gaps = 53/713 (7%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMP--QRNLVSWNSMIAGYLHNDKVKEARELF 100
           +++T+  N++IS Y K   + DAR +FE M   QRN+VSWN+MIA Y  N    EA  L+
Sbjct: 39  ERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLY 98

Query: 101 DKMFRPDL------FSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIG 154
            +M    L      F   L       +G     R  +  L + +  A  NA+V  YA+ G
Sbjct: 99  WRMNLQGLGTDHVTFVSVLGACSSLAQGREIHNRVFYSGLDSFQSLA--NALVTMYARFG 156

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME---ERDVVSWNLMLDG 211
           +  +AK++  ++ +++  SWN+++  ++++G+   A + F+ M+   + +  ++  ++ G
Sbjct: 157 SVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDVKPNSTTYINVISG 216

Query: 212 YVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
           +   + L    K   +I     + ++V    +++ Y + G   EAR +FD+M  R++V+W
Sbjct: 217 FSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSW 276

Query: 268 NAMIAAYVQRGQIEEAARLF----IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
           N MI  YV  G   EA  L+    +E  +R   ++ +++     +  L            
Sbjct: 277 NVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKAL------------ 324

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
               AQ  ++  ++  + +D            +V     ++  YA+CG ++EA  +F  M
Sbjct: 325 ----AQGRLVHSHILERGLDS-----------EVAVATALVNMYAKCGSLEEARKVFNAM 369

Query: 384 VNKDIVTWNTMIAGYAQIRQMDDAVK---IFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
            N+D V W+T+I  YA      DA K   +F+ +G R +T+SWNA+I+ ++QN   + A+
Sbjct: 370 KNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSR-DTISWNAMITTYVQNGCAVAAM 428

Query: 441 KIFVLMT-QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
           KIF  MT   G K D  T    L ACA L  L   + +H    +S   +++ V N+LI M
Sbjct: 429 KIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINM 488

Query: 500 YAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTF 559
           YA+CG ++ AE LF  A    V+SW +++A ++  G   EA+ LF+EM +EGV PD VT+
Sbjct: 489 YARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTY 548

Query: 560 IGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMK 619
             +L  C+H G ++ G + F  M E++A+ P  +H+A M+DLL R+GRL +A E+++ M 
Sbjct: 549 TSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMP 608

Query: 620 IKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEK 679
            +P+   W T L ACR+H  ++LG  A E++ EL+P  T+ Y  +SN++A  G W++V  
Sbjct: 609 FEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVAS 668

Query: 680 VRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           VR  ME  G +K PG S+IEV  ++H F SG     RT EIC  L  L   +R
Sbjct: 669 VRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMR 721



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 151/308 (49%), Gaps = 24/308 (7%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND---ARKLFEQMPQRNLV 78
           +    K G +EEA K+F+ M  ++ V ++++I AYA NG   D   ARK+F+++  R+ +
Sbjct: 350 VNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTI 409

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFDL 133
           SWN+MI  Y+ N     A ++F +M      +PD  ++  ++      G L + + L   
Sbjct: 410 SWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQ 469

Query: 134 LPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           +   E   +    N ++  YA+ G+  EA++L  A   K +VSW +M++ +++ G    A
Sbjct: 470 ISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEA 529

Query: 191 SKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLS 241
              F+ M+    + D V++  +L        L+  W++F  + E + ++     +  M+ 
Sbjct: 530 LDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVD 589

Query: 242 GYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVS 297
              R+GR+ +A+ L + MP   + VAW   + A    G++   E AA    E+   +   
Sbjct: 590 LLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAP 649

Query: 298 WTTMIDGY 305
           +  M + Y
Sbjct: 650 YIAMSNIY 657



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 22/227 (9%)

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
           ++ D+ T    L +C+    +  GR +H     S +  D  VGN+LI+MY KC  + +A 
Sbjct: 3   RQPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDAR 62

Query: 511 LLFKDAD--PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS- 567
            +F+  D    +V+SWN++IA YA NG++TEA+ L+  M ++G+  D VTF+ VL ACS 
Sbjct: 63  SVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSS 122

Query: 568 -------HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKI 620
                  H  +   GL  F+ +               ++ + +R G + +A  M + ++ 
Sbjct: 123 LAQGREIHNRVFYSGLDSFQSLANA------------LVTMYARFGSVGDAKRMFQSLQT 170

Query: 621 KPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNM 667
           +        +L   +        RI  E   +++P  T+   ++S  
Sbjct: 171 RDETSWNAVILAHSQSGDWSGALRIFKEMKCDVKPNSTTYINVISGF 217



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 112/251 (44%), Gaps = 24/251 (9%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V   N  I    + G +EEA ++F+   +K  V++ +M++A+++ GR  +A  LF++M
Sbjct: 477 SNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEM 536

Query: 73  PQRNL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGE 123
               +    V++ S++    H   +++    F  M       P    +A M+    R G 
Sbjct: 537 DLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVDLLGRSGR 596

Query: 124 LEKARELFDLLPNKEDTACWNAM-----VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSML 178
           L  A+EL + +P + D   W        + G  ++G    A+++ +  PS +   + +M 
Sbjct: 597 LFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGE-AAAERVYELDPS-STAPYIAMS 654

Query: 179 SGYTKNGEMHLASKFFEAMEERDVVSWN----LMLDGYVELDDLDSAWKFFQKIPEQNVV 234
           + Y  +G     +   + MEER +        + +DG  +L +  S  K+  +  E  + 
Sbjct: 655 NIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDG--KLHEFSSGGKYHPRTDE--IC 710

Query: 235 SWVTMLSGYAR 245
             +T L G  R
Sbjct: 711 EELTRLHGLMR 721


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/616 (34%), Positives = 337/616 (54%), Gaps = 51/616 (8%)

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
           +++  + +     +N++++ Y K G++  A   F+ + + ++ SWN +L  Y +L  L  
Sbjct: 30  RIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYSKLGYLQD 89

Query: 221 AWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN------------ 268
             + F  +P  +VVSW ++LSGYA NG + E+ R+++ M     V  N            
Sbjct: 90  MQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSS 149

Query: 269 ----------------------------AMIAAYVQRGQIEEAARLFIEMPERNPVSWTT 300
                                        ++  Y + G I +A R+F E+PE+N V + T
Sbjct: 150 NRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNT 209

Query: 301 MIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW 360
           MI G +R   + EA +L D MP K+  + T +I+G  QN    EA   F ++G  +  C 
Sbjct: 210 MITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGI-EGFCM 268

Query: 361 NVMIKG--YAQCG---RMDEAINLFRQMVNKD----IVTWNTMIAGYAQIRQMDDAVKIF 411
           +    G     CG    +DE   +   ++  D    I   + ++  Y + R +  A  +F
Sbjct: 269 DQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVF 328

Query: 412 EEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAAL 471
            +M + +N +SW A++ G+ QN +  +A++IF  M +     D  TL   +S+CA+LA+L
Sbjct: 329 RKM-RHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASL 387

Query: 472 QLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGY 531
           + G Q H  A+ SG +  + V N+LIT+Y KCG +++A  LF +    D +SW +L++GY
Sbjct: 388 EEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGY 447

Query: 532 AINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL 591
           A  G A E I LFE M+  G+ PD VTF+GVLSACS  GLV+ G   FECM + + I P+
Sbjct: 448 AQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPI 507

Query: 592 VEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLS 651
            +HY CMIDLLSRAGRL+EA   +  M   P+A  W TLL +CR++ N+++G+ A E L 
Sbjct: 508 PDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLH 567

Query: 652 ELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD 711
           +LEPQ  + Y LLS+++A  G+WD+V K+R  M   G +K+PG SWI+ KN++H F + D
Sbjct: 568 KLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNKVHIFSADD 627

Query: 712 PKQCRTAEICNTLKTL 727
                + +I   L++L
Sbjct: 628 RSSPFSDQIYAKLESL 643



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/449 (25%), Positives = 212/449 (47%), Gaps = 59/449 (13%)

Query: 5   LKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND 64
           ++++ N  ++++N    I   GK G ++ A  +F  + Q N  ++N+++SAY+K G + D
Sbjct: 32  IRTLTNPETFLYNN--LINTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYSKLGYLQD 89

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM--------------------- 103
            +++F+ MP  ++VSWNS+++GY  N  + E+  +++ M                     
Sbjct: 90  MQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSS 149

Query: 104 -------------------FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWN 144
                              ++  LF  + ++  Y + G +  A  +F+ +P K +   +N
Sbjct: 150 NRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEK-NIVVYN 208

Query: 145 AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA-SKFFE------AM 197
            M+ G  +     EA++L D MP K+ +SW ++++G T+NG    A  KF E       M
Sbjct: 209 TMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCM 268

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ-NVVSWVTMLSGYARNGRMLEARRLF 256
           ++    S      G++ LD+      +  +   Q N+     +L  Y +   +  A  +F
Sbjct: 269 DQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVF 328

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP--ERNPVSWT--TMIDGYVRIAKLD 312
            +M  +NV++W AM+  Y Q G  EEA R+F +M   E +P  +T  ++I     +A L+
Sbjct: 329 RKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLE 388

Query: 313 EARRLLDQMPYKN----IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
           E  +   Q         +    A+I+ Y +   ++ A+Q+F ++   D V W  ++ GYA
Sbjct: 389 EGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYA 448

Query: 369 QCGRMDEAINLFRQMVNKDIVTWNTMIAG 397
           Q G+ +E I+LF  M+   IV       G
Sbjct: 449 QFGKANETISLFETMLAHGIVPDGVTFVG 477



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 136/612 (22%), Positives = 264/612 (43%), Gaps = 100/612 (16%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKE 95
           +I   ++   T  YN++I+ Y K G + +AR +F+ +PQ NL SWN++++ Y     +++
Sbjct: 30  RIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYSKLGYLQD 89

Query: 96  ARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMV-------- 147
            + +FD M   D+ SW  +++ Y   G + ++  +++++  K+ +   N +         
Sbjct: 90  MQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMML-KDGSVNLNRITFSTMLILS 148

Query: 148 --AGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW 205
              G+  +G     +       S   V  + ++  Y K G ++ A++ FE + E+++V +
Sbjct: 149 SNRGFVDLGRQIHGQIFKFGYQSYLFVG-SPLVDMYAKTGFINDANRIFEEIPEKNIVVY 207

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR--- 262
           N M+ G +    +  A + F  +PE++ +SW T+++G  +NG   EA   F +M I    
Sbjct: 208 NTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFC 267

Query: 263 ------------------------------------NVVAWNAMIAAYVQRGQIEEAARL 286
                                               N+   +A++  Y +   ++ A  +
Sbjct: 268 MDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAV 327

Query: 287 FIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT----AMISGYVQNKRM 342
           F +M  +N +SWT M+ GY +    +EA R+   M    I        ++IS       +
Sbjct: 328 FRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASL 387

Query: 343 DEANQIFDKIGTHDVVCW----NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGY 398
           +E  Q   +     ++C+    N +I  Y +CG ++ A  LF +M  +D V+W  +++GY
Sbjct: 388 EEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGY 447

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           AQ  + ++ + +FE                                 M   G   D  T 
Sbjct: 448 AQFGKANETISLFET--------------------------------MLAHGIVPDGVTF 475

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVN---DLFVGNSLITMYAKCGRIQNAELLFKD 515
              LSAC+    ++ G       +K   +    D +    +I + ++ GR++ A+  F +
Sbjct: 476 VGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYT--CMIDLLSRAGRLEEAK-NFIN 532

Query: 516 ADPV--DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVD 573
             P   D I W +L++   +NGN  E  K   E + +    +P ++I + S  +  G  D
Sbjct: 533 QMPFSPDAIGWATLLSSCRLNGN-LEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWD 591

Query: 574 GGLKLFECMTEV 585
              KL + M E+
Sbjct: 592 DVAKLRKGMREM 603


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/645 (33%), Positives = 354/645 (54%), Gaps = 53/645 (8%)

Query: 102 KMFR-PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
           K FR P++F    +++ Y +   +  AR +FD +P + +   WN +++ Y+K+    E +
Sbjct: 37  KAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQR-NLYSWNTLLSSYSKLACLPEME 95

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM-------EERDVVSWNLML---D 210
           ++  AMP++++VSWNS++S Y   G +  + K +  M         R  +S  L+L    
Sbjct: 96  RVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQ 155

Query: 211 GYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAM 270
           G V L  L       +   +  V     ++  Y++ G +  AR+ FD+MP +NVV +N +
Sbjct: 156 GCVHL-GLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTL 214

Query: 271 IAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT 330
           IA  ++  +IE++ +LF +M E++ +SWT MI G+ +     EA  L  +M  +N+    
Sbjct: 215 IAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQ 274

Query: 331 ----AMISGYVQNKRMDEANQIFDKIGTHD----VVCWNVMIKGYAQCGRMDEAINLFRQ 382
               ++++       + E  Q+   I   D    +   + ++  Y +C  +  A  +FR+
Sbjct: 275 YTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRK 334

Query: 383 MVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI 442
           M  K++V+W  M+ GY Q                                N +  +A+KI
Sbjct: 335 MNCKNVVSWTAMLVGYGQ--------------------------------NGYSEEAVKI 362

Query: 443 FVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
           F  M   G + D  TL   +S+CA+LA+L+ G Q H  A+ SG ++ + V N+L+T+Y K
Sbjct: 363 FCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGK 422

Query: 503 CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
           CG I+++  LF +   VD +SW +L++GYA  G A E ++LFE M+  G  PD VTFIGV
Sbjct: 423 CGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGV 482

Query: 563 LSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKP 622
           LSACS  GLV  G ++FE M + + I P+ +HY CMIDL SRAGRL+EA + +  M   P
Sbjct: 483 LSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSP 542

Query: 623 NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRV 682
           +A  W +LL +CR H+N+++G+ A E L +LEP  T+ Y LLS+++A  G+W+EV  +R 
Sbjct: 543 DAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRK 602

Query: 683 SMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
            M   G +K+PGCSWI+ KNQ+H F + D     + +I + L+ L
Sbjct: 603 GMRDKGLRKEPGCSWIKYKNQVHIFSADDQSNPFSDQIYSELEKL 647



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 131/516 (25%), Positives = 253/516 (49%), Gaps = 33/516 (6%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF 109
           N+++SAYAK  R+  AR++F+QMPQRNL SWN++++ Y     + E   +F  M   D+ 
Sbjct: 48  NNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMV 107

Query: 110 SWALMITCYTRKGELEKARELFDLL----PNKEDTACWNAMVAGYAKIGNYNEAKKLLDA 165
           SW  +I+ Y  +G L ++ + ++L+    P   +    + M+   +K G  +   ++   
Sbjct: 108 SWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGH 167

Query: 166 MPSKNIVSW----NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA 221
           +      S+    + ++  Y+K G +  A + F+ M E++VV +N ++ G +    ++ +
Sbjct: 168 VVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDS 227

Query: 222 WKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAY--- 274
            + F  + E++ +SW  M++G+ +NG   EA  LF +M + N+      + +++ A    
Sbjct: 228 RQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGV 287

Query: 275 --VQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAM 332
             +Q G+   A  +  +  + N    + ++D Y +   +  A  +  +M  KN+ + TAM
Sbjct: 288 MALQEGKQVHAYIIRTDYQD-NIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAM 346

Query: 333 ISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
           + GY QN   +EA +IF  +  +    D      +I   A    ++E      + +   +
Sbjct: 347 LVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGL 406

Query: 389 VTWNT----MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
           +++ T    ++  Y +   ++D+ ++F EM    + VSW AL+SG+ Q     + L++F 
Sbjct: 407 ISFITVSNALVTLYGKCGSIEDSHRLFSEMS-YVDEVSWTALVSGYAQFGKANETLRLFE 465

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY---VNDLFVGNSLITMYA 501
            M   G K D  T    LSAC+    +Q G QI    IK      + D +    +I +++
Sbjct: 466 SMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYT--CMIDLFS 523

Query: 502 KCGRIQNA-ELLFKDADPVDVISWNSLIAGYAINGN 536
           + GR++ A + + K     D I W SL++    + N
Sbjct: 524 RAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRN 559



 Score =  155 bits (392), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 111/467 (23%), Positives = 214/467 (45%), Gaps = 61/467 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F  N  ++   K  R+  A ++F QM Q+N  ++N+++S+Y+K   + +  ++F  MP 
Sbjct: 44  IFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKLACLPEMERVFHAMPT 103

Query: 75  RNLVSWNSMIAGY----------------LHNDKVKEARELFDKM--------------- 103
           R++VSWNS+I+ Y                L+N      R     M               
Sbjct: 104 RDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQ 163

Query: 104 ---------FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIG 154
                    F+  +F  + ++  Y++ G +  AR+ FD +P K +   +N ++AG  +  
Sbjct: 164 VHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEK-NVVMYNTLIAGLMRCS 222

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLD 210
              ++++L   M  K+ +SW +M++G+T+NG    A   F  M     E D  ++  +L 
Sbjct: 223 RIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLT 282

Query: 211 ---GYVELDDLDSAWKFFQKIPEQ-NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA 266
              G + L +      +  +   Q N+     ++  Y +   +  A  +F +M  +NVV+
Sbjct: 283 ACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVS 342

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEAR----RLL 318
           W AM+  Y Q G  EEA ++F +M     E +  +  ++I     +A L+E      R L
Sbjct: 343 WTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRAL 402

Query: 319 DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
                  I    A+++ Y +   +++++++F ++   D V W  ++ GYAQ G+ +E + 
Sbjct: 403 VSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLR 462

Query: 379 LFRQMV----NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
           LF  M+      D VT+  +++  ++   +    +IFE M K    +
Sbjct: 463 LFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRII 509



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 110/435 (25%), Positives = 204/435 (46%), Gaps = 59/435 (13%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           SYVF  +  +    K+G V  A + F +M +KN V YN++I+   +  R+ D+R+LF  M
Sbjct: 175 SYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDM 234

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKAR 128
            +++ +SW +MIAG+  N   +EA +LF +M       D +++  ++T       L++ +
Sbjct: 235 QEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGK 294

Query: 129 ELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
           ++   +     +++    +A+V  Y K  +   A+ +   M  KN+VSW +ML GY +NG
Sbjct: 295 QVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNG 354

Query: 186 EMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT--- 238
               A K F  M+    E D  +   ++     L  L+   +F  +     ++S++T   
Sbjct: 355 YSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSN 414

Query: 239 -MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------P 291
            +++ Y + G + ++ RLF +M   + V+W A+++ Y Q G+  E  RLF  M      P
Sbjct: 415 ALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKP 474

Query: 292 ERN--------------------------------PVS--WTTMIDGYVRIAKLDEARRL 317
           ++                                 P+   +T MID + R  +L+EAR+ 
Sbjct: 475 DKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKF 534

Query: 318 LDQMPYKNIAAQTAMISGYVQNKRMDE----ANQIFDKIGTHDVVCWNVMIKGYAQCGRM 373
           +++MP+   A   A +    +  R  E    A +   K+  H+   + ++   YA  G+ 
Sbjct: 535 INKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKW 594

Query: 374 DEAINLFRQMVNKDI 388
           +E  NL + M +K +
Sbjct: 595 EEVANLRKGMRDKGL 609



 Score = 43.9 bits (102), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 38/170 (22%)

Query: 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
           C  L   +  ++IH   IK+    ++F+ N+L++ YAK  RI  A  +F      ++ SW
Sbjct: 19  CELLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSW 78

Query: 525 NS-------------------------------LIAGYAINGNATEAIKLFEEMVMEG-- 551
           N+                               LI+ YA  G   +++K +  M+  G  
Sbjct: 79  NTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPF 138

Query: 552 ----VAPDPVTFIGVLSACSHVGL-VDGGLKLFECMTEVYAIEPLVEHYA 596
               +A   +  +     C H+GL V G +  F   + V+   PLV+ Y+
Sbjct: 139 NLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYS 188


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/526 (38%), Positives = 312/526 (59%), Gaps = 10/526 (1%)

Query: 218 LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP----IRNVVAWNAMIAA 273
           +++A K F +IPE N   W  M  GY++N    +   LF QM     + N   +  ++ +
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 274 YVQRGQI---EEAARLFIEMPER-NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
            V+   +   EE     I+   R NP   TT+ID Y     +  A R+  +M  +N+ A 
Sbjct: 61  CVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAW 120

Query: 330 TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIV 389
           TAMI+GY+    +  A ++FD     D+V WN MI GY +   +  A  LF +M NKD++
Sbjct: 121 TAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPNKDVM 180

Query: 390 TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
           +WNT++ GYA    +    ++FEEM   RN  SWNALI G+ +N    + L  F  M  +
Sbjct: 181 SWNTVLNGYASNGDVMACERLFEEM-PERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVD 239

Query: 450 GKKA-DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
           G    + +TL   LSACA L AL LG+ +H  A   GY  +++V N+L+ MYAKCG ++ 
Sbjct: 240 GTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVET 299

Query: 509 AELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
           A  +FK  D  D+ISWN++I G A++G+  +A+ LF  M + G  PD +TFIG+L AC+H
Sbjct: 300 ALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTH 359

Query: 569 VGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWG 628
           +GLV+ G   F+ MT+ Y+I P +EHY C++DLL RAG L  A + ++ M I+ +A IW 
Sbjct: 360 MGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWA 419

Query: 629 TLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688
            LLGACR+++N++L  +A+EKL E EP+  + Y +LSN++ + GRW +V +++V+M  +G
Sbjct: 420 ALLGACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDFGRWKDVARLKVAMRDTG 479

Query: 689 AQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNT 734
            +K PGCS IEV + +  F S D +     +I  TL+TL   +R++
Sbjct: 480 FKKLPGCSLIEVNDYLVEFYSLDERHPEKEQIYGTLRTLTKLLRSS 525



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 113/400 (28%), Positives = 200/400 (50%), Gaps = 40/400 (10%)

Query: 64  DARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYT 119
           +A K+F+Q+P+ N   WN+M  GY  N+  K+   LF +M      P+ F++ +++    
Sbjct: 3   NAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCV 62

Query: 120 RKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNS 176
           +   L++  E+   +     + +      ++  YA  G  + A ++   M  +N+++W +
Sbjct: 63  KINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTA 122

Query: 177 MLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSW 236
           M++GY    ++  A + F+   ERD+V WN M+ GY+E  D+  A + F K+P ++V+SW
Sbjct: 123 MINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPNKDVMSW 182

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
            T+L+GYA NG ++   RLF++MP RNV +WNA+I  Y + G   E    F    +R  V
Sbjct: 183 NTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAF----KRMLV 238

Query: 297 SWTTMIDGYVRIAKLDEARRL--LDQMPYKNIAAQTAMISG--YVQNKRMDEANQIFDKI 352
             T + +    +  L    RL  LD   + ++ A++    G  YV+N  MD         
Sbjct: 239 DGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDM-------- 290

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFE 412
                         YA+CG ++ A+++F+ M NKD+++WNT+I G A      DA+ +F 
Sbjct: 291 --------------YAKCGVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFS 336

Query: 413 EM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
            M   G+  + +++  ++          D    F  MT +
Sbjct: 337 HMKIAGENPDGITFIGILCACTHMGLVEDGFSYFKSMTDD 376



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 181/400 (45%), Gaps = 43/400 (10%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP----QRNLVSWNSMIAG 86
           +E A K+F Q+ + N   +N+M   Y++N    D   LF QM       N  ++  ++  
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 87  YLHNDKVKEARE----LFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTAC 142
            +  + +KE  E    +    FR + F    +I  Y   G +  A  +F  +  +   A 
Sbjct: 61  CVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIA- 119

Query: 143 WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV 202
           W AM+ GY    +   A++L D  P ++IV WN+M+SGY +  ++  A + F+ M  +DV
Sbjct: 120 WTAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPNKDV 179

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR 262
           +SWN +L+GY    D+ +  + F+++PE+NV SW  ++ GY RNG   E    F +M + 
Sbjct: 180 MSWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVD 239

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL---LD 319
             V                            N  +   ++    R+  LD  + +    +
Sbjct: 240 GTVV--------------------------PNDATLVNVLSACARLGALDLGKWVHVYAE 273

Query: 320 QMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
              YK N+  + A++  Y +   ++ A  +F  +   D++ WN +I G A  G   +A+N
Sbjct: 274 SHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLISWNTIIGGLAVHGHGADALN 333

Query: 379 LFRQMV----NKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           LF  M     N D +T+  ++     +  ++D    F+ M
Sbjct: 334 LFSHMKIAGENPDGITFIGILCACTHMGLVEDGFSYFKSM 373



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 159/338 (47%), Gaps = 19/338 (5%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F     I      G +  A ++F +M ++N + + +MI+ Y     +  AR+LF+  P+R
Sbjct: 87  FVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAMINGYITCCDLVTARRLFDLAPER 146

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           ++V WN+MI+GY+    V  ARELFDKM   D+ SW  ++  Y   G++     LF+ +P
Sbjct: 147 DIVLWNTMISGYIEAKDVIRARELFDKMPNKDVMSWNTVLNGYASNGDVMACERLFEEMP 206

Query: 136 NKEDTACWNAMVAGYAKIGNYNEA-----KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
            + +   WNA++ GY + G ++E      + L+D     N  +  ++LS   + G + L 
Sbjct: 207 ER-NVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLG 265

Query: 191 SKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARN 246
                  E      +V   N ++D Y +   +++A   F+ +  ++++SW T++ G A +
Sbjct: 266 KWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLISWNTIIGGLAVH 325

Query: 247 GRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-----S 297
           G   +A  LF  M I     + + +  ++ A    G +E+    F  M +   +      
Sbjct: 326 GHGADALNLFSHMKIAGENPDGITFIGILCACTHMGLVEDGFSYFKSMTDDYSIVPRIEH 385

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG 335
           +  ++D   R   L  A   + +MP +  A   A + G
Sbjct: 386 YGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAALLG 423


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 239/804 (29%), Positives = 395/804 (49%), Gaps = 115/804 (14%)

Query: 32  EEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHND 91
           +E I+I++ + QK    YN  +        V +   + E +  R       ++  Y    
Sbjct: 86  DECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSR-------LLEVYCQTG 138

Query: 92  KVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVA 148
            V++AR +FDKM   ++FSW  ++  Y   G+ E+  +LF L+ N   + D   +  +  
Sbjct: 139 CVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFK 198

Query: 149 GYAKIGNYNEAKKLLDAMPS----KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS 204
             +++ NY   K + D M S     N     S+L  + K G M +A +FFE +E +DV  
Sbjct: 199 ACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFM 258

Query: 205 WNLMLDGYVELDDLDSAWKFFQKI------PEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
           WN+M+ GY    +   A K    +      P+Q  V+W  ++SGYA++G+  EA + F +
Sbjct: 259 WNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQ--VTWNAIISGYAQSGQFEEASKYFLE 316

Query: 259 M-------PIRNVVAWNAMIAAYVQRGQIEEAARLF------------------------ 287
           M       P  NVV+W A+IA   Q G   EA  +F                        
Sbjct: 317 MGGLKDFKP--NVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTN 374

Query: 288 ----------------IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
                           +E  + + +   +++D Y +   ++ ARR    +   ++ +  A
Sbjct: 375 LSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNA 434

Query: 332 MISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQM---- 383
           M++GY      +EA ++  ++       D++ WN ++ G+ Q G    A+  F++M    
Sbjct: 435 MLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMG 494

Query: 384 VNKDIVTWNTMIAGYAQIR-----------------------------------QMDDAV 408
           ++ +  T +  +A   Q+R                                    ++ A 
Sbjct: 495 MDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVAC 554

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
            +F E+  R + V WN++IS   Q+   ++AL +   M     + +  T+  AL AC+ L
Sbjct: 555 SVFSELSTR-DVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKL 613

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
           AAL+ G++IH   I+ G     F+ NSLI MY +CG IQ +  +F      D++SWN +I
Sbjct: 614 AALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMI 673

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI 588
           + Y ++G   +A+ LF++    G+ P+ +TF  +LSACSH GL++ G K F+ M   YA+
Sbjct: 674 SVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAM 733

Query: 589 EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVE 648
           +P VE YACM+DLLSRAG+ +E  E ++ M  +PNA +WG+LLGACR+H N  L   A  
Sbjct: 734 DPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAAR 793

Query: 649 KLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFL 708
            L ELEPQ +  Y L++N+++ AGRW++  K+R  M+  G  K PGCSWIEVK ++H+F+
Sbjct: 794 YLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFV 853

Query: 709 SGDPKQCRTAEICNTLKTLAAQIR 732
            GD       +I   +++L   I+
Sbjct: 854 VGDTSHPLMEQISAKMESLYFDIK 877



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 112/463 (24%), Positives = 206/463 (44%), Gaps = 59/463 (12%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMS-----QKNTVTYNSMISAYAKNGRVNDARKLFEQM- 72
           N  I+   +SG+ EEA K F +M      + N V++ ++I+   +NG   +A  +F +M 
Sbjct: 295 NAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMV 354

Query: 73  ---PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGEL 124
               + N ++  S ++   +   ++  RE+     +      DL     ++  Y +   +
Sbjct: 355 LEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSV 414

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP----SKNIVSWNSMLSG 180
           E AR  F ++  + D   WNAM+AGYA  G++ EA +LL  M       +I++WN +++G
Sbjct: 415 EVARRKFGMI-KQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTG 473

Query: 181 YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
           +T+ G+   A +FF+ M        ++ +D                  P    +S     
Sbjct: 474 FTQYGDGKAALEFFQRMH-------SMGMD------------------PNTTTISGALAA 508

Query: 241 SGYARN---GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
            G  RN   G+ +    L + + +   V  +A+I+ Y     +E A  +F E+  R+ V 
Sbjct: 509 CGQVRNLKLGKEIHGYVLRNHIELSTGVG-SALISMYSGCDSLEVACSVFSELSTRDVVV 567

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT-AMISGYVQNKRM------DEANQIFD 350
           W ++I    +  +   A  LL +M   N+   T  M+S      ++       E +Q   
Sbjct: 568 WNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFII 627

Query: 351 KIGTHDV-VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVK 409
           + G        N +I  Y +CG + ++  +F  M  +D+V+WN MI+ Y       DAV 
Sbjct: 628 RCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVN 687

Query: 410 IFEE---MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
           +F++   MG + N +++  L+S    +    +  K F +M  E
Sbjct: 688 LFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTE 730



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 141/286 (49%), Gaps = 26/286 (9%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL-VSWNSMIAGYLH 89
           +E A  +FS++S ++ V +NS+ISA A++GR  +A  L  +M   N+ V+  +M++    
Sbjct: 550 LEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPA 609

Query: 90  NDK---VKEARELFDKMFRPDL----FSWALMITCYTRKGELEKARELFDLLPNKEDTAC 142
             K   +++ +E+   + R  L    F    +I  Y R G ++K+R +FDL+P + D   
Sbjct: 610 CSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQR-DLVS 668

Query: 143 WNAMVAGYAKIGNYNEAKKLLDAMPS----KNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           WN M++ Y   G   +A  L     +     N +++ ++LS  + +G +    K+F+ M+
Sbjct: 669 WNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMK 728

Query: 199 -----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSWVTMLSGYAR---NGRM 249
                +  V  +  M+D        +   +F +K+P E N   W ++L G  R   N  +
Sbjct: 729 TEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLL-GACRIHCNPDL 787

Query: 250 LE--ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
            E  AR LF+  P ++   +  M   Y   G+ E+AA++   M ER
Sbjct: 788 AEYAARYLFELEP-QSSGNYVLMANIYSAAGRWEDAAKIRCLMKER 832



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 96/200 (48%), Gaps = 12/200 (6%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP-- 73
           F  N  I   G+ G ++++ +IF  M Q++ V++N MIS Y  +G   DA  LF+Q    
Sbjct: 636 FILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTM 695

Query: 74  --QRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEK 126
             + N +++ ++++   H+  ++E  + F  M       P +  +A M+   +R G+  +
Sbjct: 696 GLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNE 755

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK---KLLDAMPSKNIVSWNSMLSGYTK 183
             E  + +P + + A W +++       N + A+   + L  +  ++  ++  M + Y+ 
Sbjct: 756 TLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSA 815

Query: 184 NGEMHLASKFFEAMEERDVV 203
            G    A+K    M+ER V 
Sbjct: 816 AGRWEDAAKIRCLMKERGVT 835


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/626 (34%), Positives = 342/626 (54%), Gaps = 55/626 (8%)

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
           +++    S  I   N ++  Y K G    A K F+ M +R+  S+N +L    +   LD 
Sbjct: 44  RIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDE 103

Query: 221 AWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP-------------------- 260
           A+  F+ +PE +  SW  M+SG+A++ R  EA R F  M                     
Sbjct: 104 AFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAG 163

Query: 261 -------------------IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTM 301
                              + +V   +A++  Y + G +  A R F  M  RN VSW ++
Sbjct: 164 LTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSL 223

Query: 302 IDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIGT--- 354
           I  Y +     +A  +   M    +        +++S       + E  QI  ++     
Sbjct: 224 ITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDK 283

Query: 355 --HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFE 412
             +D+V  N ++  YA+C R++EA  +F +M  +++V+  +M+ GYA+   +  A  +F 
Sbjct: 284 YRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFS 343

Query: 413 EMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQ 472
            M   +N VSWNALI+G+ QN  + +A+++F+L+ +E     H T    L+ACA+LA L+
Sbjct: 344 NM-MEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLK 402

Query: 473 LGRQIHHLAIKSGY------VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNS 526
           LGRQ H   +K G+       +D+FVGNSLI MY KCG +++  L+F+     DV+SWN+
Sbjct: 403 LGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNA 462

Query: 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVY 586
           +I GYA NG  T A+++F +M++ G  PD VT IGVLSACSH GLV+ G + F  M    
Sbjct: 463 MIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTEL 522

Query: 587 AIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIA 646
            + P+ +H+ CM+DLL RAG LDEA ++++ M ++P+  +WG+LL AC++H NI+LG+  
Sbjct: 523 GLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGNIELGKYV 582

Query: 647 VEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHT 706
            EKL E++P  +  Y LLSNM+AE GRW +V +VR  M   G  KQPGCSWIE+++++H 
Sbjct: 583 AEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQPGCSWIEIQSRVHV 642

Query: 707 FLSGDPKQCRTAEICNTLKTLAAQIR 732
           F+  D +     +I   LK L  Q++
Sbjct: 643 FMVKDKRHPLKKDIHLVLKFLTEQMK 668



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 129/467 (27%), Positives = 226/467 (48%), Gaps = 65/467 (13%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F QN+ +   GK G  E+A K+F +M Q+NT +YN+++S   K G++++A  +F+ M
Sbjct: 52  SEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSM 111

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL----FSWALMITCYTRKGELEKAR 128
           P+ +  SWN+M++G+  +D+ +EA   F  M   D     +S+   ++      +L    
Sbjct: 112 PEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGI 171

Query: 129 ELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
           ++  L+       D    +A+V  Y+K G    A++  D M  +NIVSWNS+++ Y +NG
Sbjct: 172 QIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNG 231

Query: 186 EMHLASKFFEAMEE----------------------------------------RDVVSW 205
               A + F  M +                                         D+V  
Sbjct: 232 PAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLG 291

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
           N ++D Y +   ++ A   F ++P +NVVS  +M+ GYAR   +  AR +F  M  +NVV
Sbjct: 292 NALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVV 351

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWT--TMIDGYVRIAKLDEARRLLDQM 321
           +WNA+IA Y Q G+ EEA RLF+ +   +  P  +T   +++    +A L   R+   Q+
Sbjct: 352 SWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQI 411

Query: 322 ----------PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
                        +I    ++I  Y++   +++   +F+++   DVV WN MI GYAQ G
Sbjct: 412 LKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNG 471

Query: 372 RMDEAINLFRQMV----NKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
               A+ +FR+M+      D VT   +++  +    +++  + F  M
Sbjct: 472 YGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSM 518



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 145/285 (50%), Gaps = 36/285 (12%)

Query: 298 WTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
           +  ++D  VR     +ARR+    +       I  Q  ++  Y +    ++A ++FD++ 
Sbjct: 22  FAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMP 81

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEE 413
             +   +N ++    + G++DEA N+F+ M   D  +WN M++G+AQ  + ++A++ F +
Sbjct: 82  QRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVD 141

Query: 414 MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQL 473
           M               F+ NE+                     +   ALSACA L  L +
Sbjct: 142 MHS-----------EDFVLNEY---------------------SFGSALSACAGLTDLNM 169

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           G QIH L  KS Y+ D+++G++L+ MY+KCG +  A+  F      +++SWNSLI  Y  
Sbjct: 170 GIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQ 229

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
           NG A +A+++F  M+  GV PD +T   V+SAC+    +  GL++
Sbjct: 230 NGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQI 274



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 94/210 (44%), Gaps = 35/210 (16%)

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL-- 511
           D S  A  L +C    +    R+IH   IK+ + +++F+ N L+  Y KCG  ++A    
Sbjct: 18  DSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVF 77

Query: 512 -----------------------------LFKDADPVDVISWNSLIAGYAINGNATEAIK 542
                                        +FK     D  SWN++++G+A +    EA++
Sbjct: 78  DRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALR 137

Query: 543 LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV-YAIEPLVEHYACMIDL 601
            F +M  E    +  +F   LSAC+ +  ++ G+++   +++  Y ++  V   + ++D+
Sbjct: 138 FFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLD--VYMGSALVDM 195

Query: 602 LSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
            S+ G +  A     GM ++ N   W +L+
Sbjct: 196 YSKCGVVACAQRAFDGMAVR-NIVSWNSLI 224


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 228/722 (31%), Positives = 387/722 (53%), Gaps = 67/722 (9%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           N    N++I+ Y + G +  A+KLF++M  RNLV+W  +I+GY  N K  EA   F  M 
Sbjct: 133 NLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMV 192

Query: 105 R----PDLFSWALMITCYTRKGE--LEKARELFDLLPNK---EDTACWNAMVAGYAK-IG 154
           R    P+ +++   +      G    +   ++  L+       D    N +++ Y   + 
Sbjct: 193 RAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLD 252

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE 214
           + N+A+ + D +  +N +SWNS++S Y++ G+   A   F +M++  +       D + E
Sbjct: 253 SANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSE 312

Query: 215 LDDLDSAWKFFQKIPEQNVVSWVT---------MLSGYARNGRMLEARRLFDQMPIRNVV 265
              L+   +  +++    + + +          +++ YA++G + +A  +F+ M  ++ V
Sbjct: 313 FSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSV 372

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRI-AKLDEARRLLDQM--- 321
           +WN++I+   Q    E+AA +F  MPE + VSW ++I       A + +A +   QM   
Sbjct: 373 SWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRG 432

Query: 322 -------PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMD 374
                   + NI +  + +S +  + ++     +     + D    N ++  Y +CG M+
Sbjct: 433 GWGLSRVTFINILSAVSSLSLHEVSHQIHAL--VLKYCLSDDTAIGNALLSCYGKCGEMN 490

Query: 375 EAINLFRQMV-NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433
           E   +F +M   +D V+WN+MI+GY                                + N
Sbjct: 491 ECEKIFARMSETRDEVSWNSMISGY--------------------------------IHN 518

Query: 434 EFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG 493
           E    A+ +   M Q+G++ D  T A  LSACA +A L+ G ++H   I++   +D+ VG
Sbjct: 519 ELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIRACLESDVVVG 578

Query: 494 NSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA 553
           ++L+ MY+KCGRI  A   F+     +V SWNS+I+GYA +G+  +A+KLF  M+++G  
Sbjct: 579 SALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQP 638

Query: 554 PDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFE 613
           PD VTF+GVLSACSHVG V+ G + F+ M+EVY + P VEH++CM+DLL RAG+LDE  +
Sbjct: 639 PDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGD 698

Query: 614 MVKGMKIKPNAGIWGTLLGA-CRMH-QNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEA 671
            +  M +KPN  IW T+LGA CR + +N +LGR A E L ELEPQ    Y LL+NM+A  
Sbjct: 699 FINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASG 758

Query: 672 GRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
            +W++V K R +M+ +  +K+ GCSW+ +K+ +H F++GD        I + L+ L  ++
Sbjct: 759 EKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDLIYDKLRELNRKM 818

Query: 732 RN 733
           R+
Sbjct: 819 RD 820



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 129/506 (25%), Positives = 208/506 (41%), Gaps = 122/506 (24%)

Query: 251 EARRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYV 306
           EAR L  Q      + N+   N +I  YV+ G +  A +LF EM  RN V+W  +I GY 
Sbjct: 117 EARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYT 176

Query: 307 RIAKLDEA-RRLLDQMPYKNIAAQTAM--------------------ISGYVQNKR---- 341
           +  K DEA  R  D +    I    A                     I G +   R    
Sbjct: 177 QNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSD 236

Query: 342 --------------MDEAN---QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
                         +D AN    +FD IG  + + WN +I  Y++ G    A +LF  M 
Sbjct: 237 VVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQ 296

Query: 385 ----------------------------------------NKDIVTWNTMIAGYAQIRQM 404
                                                   +  +   N ++  YA+   +
Sbjct: 297 KEGLGFSFKPNDAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAI 356

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC---- 460
            DA  +FE M   +++VSWN+LISG  QNE   DA ++F LM +  + + +S +      
Sbjct: 357 ADACSVFELM-VEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDS 415

Query: 461 ----------------------------ALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
                                        LSA + L+  ++  QIH L +K    +D  +
Sbjct: 416 EASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAI 475

Query: 493 GNSLITMYAKCGRIQNAELLF-KDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
           GN+L++ Y KCG +   E +F + ++  D +SWNS+I+GY  N    +A+ L   M+ +G
Sbjct: 476 GNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKG 535

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
              D  TF  +LSAC+ V  ++ G+++  C      +E  V   + ++D+ S+ GR+D A
Sbjct: 536 QRLDSFTFATILSACASVATLERGMEVHACGIRA-CLESDVVVGSALVDMYSKCGRIDYA 594

Query: 612 FEMVKGMKIKPNAGIWGTLLGACRMH 637
               + M ++ N   W +++     H
Sbjct: 595 SRFFELMPLR-NVYSWNSMISGYARH 619



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 147/659 (22%), Positives = 266/659 (40%), Gaps = 156/659 (23%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F  N  I    + G +  A K+F +MS +N VT+  +IS Y +NG+ ++A   F  M +
Sbjct: 134 LFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVR 193

Query: 75  -----------------------------------------RNLVSWNSMIAGYLHN-DK 92
                                                     ++V  N +I+ Y    D 
Sbjct: 194 AGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDS 253

Query: 93  VKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP----------------- 135
             +AR +FD +   +  SW  +I+ Y+R+G+   A +LF  +                  
Sbjct: 254 ANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEF 313

Query: 136 ----------------------NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS 173
                                 N    A  N +V  YAK G   +A  + + M  K+ VS
Sbjct: 314 SVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVS 373

Query: 174 WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELD-DLDSAWKFF------- 225
           WNS++SG  +N     A++ F  M E D VSWN ++    + +  +  A K+F       
Sbjct: 374 WNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGG 433

Query: 226 ---QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA-----WNAMIAAYVQR 277
               ++   N++S V+ LS       + E       + ++  ++      NA+++ Y + 
Sbjct: 434 WGLSRVTFINILSAVSSLS-------LHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKC 486

Query: 278 GQIEEAARLFIEMPE-RNPVSWTTMIDGYVRIAKLDEARRL----------LDQMPYKNI 326
           G++ E  ++F  M E R+ VSW +MI GY+    L +A  L          LD   +  I
Sbjct: 487 GEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATI 546

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
            +  A ++     + M+            DVV  + ++  Y++CGR+D A   F  M  +
Sbjct: 547 LSACASVA--TLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLR 604

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446
           ++ +WN+MI+GYA+    + A+K+F                                  M
Sbjct: 605 NVYSWNSMISGYARHGHGEKALKLFTR--------------------------------M 632

Query: 447 TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN--SLITMYAKCG 504
             +G+  DH T    LSAC+H+  ++ G + H  ++   Y     V +   ++ +  + G
Sbjct: 633 MLDGQPPDHVTFVGVLSACSHVGFVEEGFE-HFKSMSEVYRLSPRVEHFSCMVDLLGRAG 691

Query: 505 RIQNAELLFKDADPV--DVISWNSLIAGYA-INGNATEAIKLFEEMVMEGVAPDPVTFI 560
           ++      F ++ P+  +V+ W +++      NG  TE  +   EM++E    + V ++
Sbjct: 692 KLDEVG-DFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYV 749



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 110/222 (49%), Gaps = 25/222 (11%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           + + V  ++++  Y+K GR++ A + FE MP RN+ SWNSMI+GY  +   ++A +LF +
Sbjct: 572 ESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTR 631

Query: 103 MF----RPDLFSWALMITCYTRKGELEKA-------RELFDLLPNKEDTACWNAMVAGYA 151
           M      PD  ++  +++  +  G +E+         E++ L P  E  +C   MV    
Sbjct: 632 MMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSC---MVDLLG 688

Query: 152 KIGNYNEAKKLLDAMPSK-NIVSWNSMLSGYT----KNGEM-HLASKFFEAMEERDVVSW 205
           + G  +E    +++MP K N++ W ++L        +N E+   A++    +E ++ V++
Sbjct: 689 RAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNY 748

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNV-----VSWVTMLSG 242
            L+ + Y   +  +   K    + E  V      SWVTM  G
Sbjct: 749 VLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDG 790


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 232/735 (31%), Positives = 379/735 (51%), Gaps = 69/735 (9%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLH----NDKVKEARELFDKMFRP 106
           S+++ YAK      AR +  +MP R++VSW ++I G +     ND +   +E+ ++   P
Sbjct: 152 SLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMP 211

Query: 107 DLFSWALMITCYTRKGELEKAREL------FDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
           + F+ A  +   +    L+  +++        LL    D    +A+V  YAK G    A 
Sbjct: 212 NEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLL---DLFVGSALVDLYAKCGEIELAS 268

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELD 216
           K+   MP +N V+WN +L+GY + G++    K F +M E DV     +   +L G     
Sbjct: 269 KMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSK 328

Query: 217 DLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
           +L         I     E N      ++  Y++ G  ++A  +F  +   ++V W+A+I 
Sbjct: 329 NLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALIT 388

Query: 273 AYVQRGQIEEAARLF--IEMPERNPVSWT--TMIDGYVRIAKLDEARRLLDQM-PY---K 324
              Q+GQ EE+ +LF  + + +  P  +T  +++        L   + +   +  Y    
Sbjct: 389 CLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFET 448

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
           ++A   A+++ Y++N  + +  ++++ +   D++ WN  + G   CG  D  + +F  M+
Sbjct: 449 DVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHML 508

Query: 385 NKDIV---------------------------------------TWNTMIAGYAQIRQMD 405
            +  +                                           +I  YA+   ++
Sbjct: 509 EEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLE 568

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
           DA   F  +   R+  +W  +I+ + Q      AL  F  M QEG K +  TLA  LS C
Sbjct: 569 DADVAFNRL-SVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGC 627

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
           + LA+L+ G+Q+H +  KSG+V+D+FVG++L+ MYAKCG ++ AE LF+     D I+WN
Sbjct: 628 SSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWN 687

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
           ++I GYA NG   +A+  F  M+ EG++PD VTF G+LSACSH GLV+ G + F  M   
Sbjct: 688 TIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRD 747

Query: 586 YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI 645
           + I P V+H ACM+D+L R G+ DE  + ++ M++  NA IW T+LGA +MH N+ LG  
Sbjct: 748 FGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEK 807

Query: 646 AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705
           A  KL EL+P++ S Y LLSN+ A  GRWD+V++VR  M   G +K+PGCSW+E   Q+H
Sbjct: 808 AANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVH 867

Query: 706 TFLSGDPKQCRTAEI 720
           TF+S D    +  EI
Sbjct: 868 TFVSHDYSHPQIQEI 882



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 136/556 (24%), Positives = 245/556 (44%), Gaps = 60/556 (10%)

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           D+  W ++V  YAK      A+ +L  MP +++VSW +++ G    G  + +   F+ M+
Sbjct: 146 DSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQ 205

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ--------NVVSWVTMLSGYARNGRML 250
              ++     L   ++   L  A    +++  Q        ++     ++  YA+ G + 
Sbjct: 206 NEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIE 265

Query: 251 EARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYV 306
            A ++F  MP +N V WN ++  Y QRG +    +LF  M E     N  + TT++ G  
Sbjct: 266 LASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCA 325

Query: 307 RIAKLDEAR---RLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNV 362
               L + +    L+ +  Y+ N      ++  Y +     +A  +F  I   D+V W+ 
Sbjct: 326 NSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSA 385

Query: 363 MIKGYAQCGRMDEAINLFRQM--------------------------------------- 383
           +I    Q G+ +E+I LF  M                                       
Sbjct: 386 LITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYG 445

Query: 384 VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
              D+   N ++  Y +   + D  K++E M   R+ +SWNA +SG      +   L IF
Sbjct: 446 FETDVAVSNALVTMYMKNGCVHDGTKLYESM-VDRDLISWNAYLSGLHDCGMYDRPLTIF 504

Query: 444 VLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
             M +EG   +  T    L +C+ L  +  GRQ+H   IK+   ++ FV  +LI MYAKC
Sbjct: 505 YHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKC 564

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
             +++A++ F      D+ +W  +I  YA      +A+  F +M  EGV P+  T  G L
Sbjct: 565 MYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCL 624

Query: 564 SACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPN 623
           S CS +  ++GG +L   + +   +  +    A ++D+ ++ G ++EA  + + + I+ +
Sbjct: 625 SGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSA-LVDMYAKCGCMEEAEALFEAL-IRRD 682

Query: 624 AGIWGTLLGACRMHQN 639
              W T++  C   QN
Sbjct: 683 TIAWNTII--CGYAQN 696



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 120/517 (23%), Positives = 222/517 (42%), Gaps = 102/517 (19%)

Query: 26  GKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR----NLVSWN 81
            K G +E A K+F  M ++N VT+N +++ YA+ G V    KLF  M +     N  +  
Sbjct: 259 AKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLT 318

Query: 82  SMIAGYLHNDKVKEAREL-----------------------------------FDKMFRP 106
           +++ G  ++  +K+ + +                                   F  + +P
Sbjct: 319 TVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKP 378

Query: 107 DLFSWALMITCYTRKGELEKARELF------DLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
           D+  W+ +ITC  ++G+ E++ +LF      D LPN+  T C  ++++     GN    +
Sbjct: 379 DIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQY-TIC--SLLSAATNTGNLQYGQ 435

Query: 161 KLLDAM----PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELD 216
            +   +       ++   N++++ Y KNG +H  +K +E+M +RD++SWN  L G  +  
Sbjct: 436 SIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCG 495

Query: 217 DLDSAWKFFQKIPEQ----NVVSWVTMLSGYA-----RNGRMLEARRLFDQMPIRNVVAW 267
             D     F  + E+    N+ +++++L   +       GR + A  + +Q+   N V  
Sbjct: 496 MYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVC- 554

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
            A+I  Y +   +E+A   F  +  R+  +WT +I  Y +  + ++A     QM  + + 
Sbjct: 555 TALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVK 614

Query: 328 AQ----TAMISGYVQNKRMDEANQ----IFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
                    +SG      ++   Q    +F      D+   + ++  YA+CG M+EA  L
Sbjct: 615 PNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEAL 674

Query: 380 FRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDA 439
           F  ++ +D + WNT+I GYAQ  Q +                                 A
Sbjct: 675 FEALIRRDTIAWNTIICGYAQNGQGN--------------------------------KA 702

Query: 440 LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ 476
           L  F +M  EG   D  T    LSAC+H   ++ G++
Sbjct: 703 LTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKE 739



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/358 (20%), Positives = 156/358 (43%), Gaps = 58/358 (16%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTV---------------------------------- 47
           IT L + G+ EE+IK+F  M   +T+                                  
Sbjct: 387 ITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGF 446

Query: 48  -----TYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGY----LHNDKVKEARE 98
                  N++++ Y KNG V+D  KL+E M  R+L+SWN+ ++G     +++  +     
Sbjct: 447 ETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYH 506

Query: 99  LFDKMFRPDLFSWALMITCYTRKGELEKARELF-DLLPNKEDTACW--NAMVAGYAKIGN 155
           + ++ F P+++++  ++   +   ++   R++   ++ N+ D   +   A++  YAK   
Sbjct: 507 MLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMY 566

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV-- 213
             +A    + +  +++ +W  +++ Y +  +   A  +F  M++  V      L G +  
Sbjct: 567 LEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSG 626

Query: 214 --ELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
              L  L+   +    + +   VS +     ++  YA+ G M EA  LF+ +  R+ +AW
Sbjct: 627 CSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAW 686

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           N +I  Y Q GQ  +A   F  M +     + V++T ++        ++E +   + M
Sbjct: 687 NTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSM 744



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 6/172 (3%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           L  CA   +L + + IH L +K     D  +  SL+ +YAKC     A L+       DV
Sbjct: 119 LRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDV 178

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC 581
           +SW +LI G    G A ++I LF+EM  EG+ P+  T    L ACS    +D G ++   
Sbjct: 179 VSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMH-- 236

Query: 582 MTEVYAIEPLVEHY--ACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
             + + +  L++ +  + ++DL ++ G ++ A +M  GM  + N   W  LL
Sbjct: 237 -AQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMP-EQNDVTWNVLL 286



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 118/261 (45%), Gaps = 23/261 (8%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           I    K   +E+A   F+++S ++  T+  +I+ YA+  +   A   F QM Q  +    
Sbjct: 558 IDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNE 617

Query: 82  SMIAGYLHN----DKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDL 133
             +AG L        ++  ++L   +F+     D+F  + ++  Y + G +E+A  LF+ 
Sbjct: 618 FTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEA 677

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEA----KKLLDAMPSKNIVSWNSMLS-----GYTKN 184
           L  + DT  WN ++ GYA+ G  N+A    + +LD   S + V++  +LS     G  + 
Sbjct: 678 LI-RRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEE 736

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSWVTMLSGY 243
           G+ H  S + +      V     M+D    +   D    F QK+   QN + W T+L   
Sbjct: 737 GKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGAS 796

Query: 244 ARNGRML----EARRLFDQMP 260
             +  ++     A +LF+  P
Sbjct: 797 KMHNNLVLGEKAANKLFELQP 817



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 83/189 (43%), Gaps = 36/189 (19%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL---- 77
           +    K G +EEA  +F  + +++T+ +N++I  YA+NG+ N A   F  M    +    
Sbjct: 659 VDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDG 718

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
           V++  +++   H   V+E +E F+ M+R                         F + P  
Sbjct: 719 VTFTGILSACSHQGLVEEGKEHFNSMYRD------------------------FGISPTV 754

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNGEMHL----ASK 192
           +  AC   MV    ++G ++E +  +  M  S+N + W ++L     +  + L    A+K
Sbjct: 755 DHCAC---MVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANK 811

Query: 193 FFEAMEERD 201
            FE   E +
Sbjct: 812 LFELQPEEE 820


>gi|302784086|ref|XP_002973815.1| hypothetical protein SELMODRAFT_100620 [Selaginella moellendorffii]
 gi|300158147|gb|EFJ24770.1| hypothetical protein SELMODRAFT_100620 [Selaginella moellendorffii]
          Length = 564

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/588 (33%), Positives = 324/588 (55%), Gaps = 36/588 (6%)

Query: 92  KVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYA 151
            + +AR  FD++  P+ FSW ++I  Y + G++  AR+ FD +P +  +  WN ++  YA
Sbjct: 7   SLDDARTAFDRLAHPNAFSWNILILAYAQNGQIPLARDAFDRMPART-SVTWNTLLTAYA 65

Query: 152 KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
           + G+  E++ L   MP + IV+WNS++  Y  NG +  A   F+AM ER   SWN+M+ G
Sbjct: 66  RAGHMPESELLFKNMPERGIVTWNSIVEAYAHNGLLARAKTLFDAMPERTAYSWNIMIQG 125

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
           YV+     SA   F+++P+++  SW T+L+G    G + EA R+F+  P R++ A N M+
Sbjct: 126 YVDNSRFQSALAAFERMPQRSTASWNTVLAGLVAAGHLREAERVFEATPHRDLHAHNTMV 185

Query: 272 AAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
           +AY + G +  A  +F ++P RN V W  ++  YV+  +L  A+   D  P +++A+  A
Sbjct: 186 SAYCKAGALHRARDVFDKVPHRNFVCWNALLQAYVQNGQLSTAKATFDVSPCRDVASWNA 245

Query: 332 MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTW 391
           M+ G+ +  ++ +A  +F ++   DVV    ++  YA+ G + +A  LF  +  +D + W
Sbjct: 246 MMQGFAEEGQLQDAELLFQRMPKRDVVSATALVVAYARHGHITQARALFDGLPVRDTIAW 305

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
           N MIA Y Q                           +G       LDAL +F +M  E  
Sbjct: 306 NAMIAAYTQ---------------------------AGLA-----LDALNLFKVMDLEAV 333

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSG-YVNDLFVGNSLITMYAKCGRIQNAE 510
             DH++L+ AL ACA LAAL+ G+ IH   + S  + ++  V  SLITMYA+C R+  A+
Sbjct: 334 PLDHASLSSALDACATLAALREGKLIHSSILHSELFHSNTIVATSLITMYARCARLCEAK 393

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
             F      DV  WN+++A Y+ NG   E++++F  M +EG  P   +FI +L++CSH G
Sbjct: 394 RAFDGLTKRDVPCWNTMVAAYSQNGLFQESLEIFRTMEVEGHKPQSASFICILTSCSHGG 453

Query: 571 LVDGGLKLFEC--MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWG 628
           L+   L  F    + E + + P V+HY C+IDLL+R G L +A E++  M  +P++  W 
Sbjct: 454 LLTEALWYFTALQLVEDHGVVPTVDHYICIIDLLARIGWLHQAEELLNTMPFEPDSVAWM 513

Query: 629 TLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDE 676
            LLG C+   +++ G    + + +L+P+  + Y LLSN HA     DE
Sbjct: 514 ALLGGCKGQNDVQTGARVAKHVFQLQPRTPALYVLLSNTHASNAVEDE 561



 Score =  268 bits (686), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 152/527 (28%), Positives = 251/527 (47%), Gaps = 62/527 (11%)

Query: 56  YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMI 115
           Y   G ++DAR  F+++   N  SWN +I  Y  N ++  AR+ FD+M      +W  ++
Sbjct: 2   YGACGSLDDARTAFDRLAHPNAFSWNILILAYAQNGQIPLARDAFDRMPARTSVTWNTLL 61

Query: 116 TCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN 175
           T Y R G + ++  LF  +P +     WN++V  YA  G    AK L DAMP +   SWN
Sbjct: 62  TAYARAGHMPESELLFKNMPER-GIVTWNSIVEAYAHNGLLARAKTLFDAMPERTAYSWN 120

Query: 176 SMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
            M+ GY  N     A   FE M +R   SWN +L G V    L  A + F+  P +++ +
Sbjct: 121 IMIQGYVDNSRFQSALAAFERMPQRSTASWNTVLAGLVAAGHLREAERVFEATPHRDLHA 180

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
             TM+S Y + G +  AR +FD++P RN V WNA++ AYVQ GQ+  A   F   P R+ 
Sbjct: 181 HNTMVSAYCKAGALHRARDVFDKVPHRNFVCWNALLQAYVQNGQLSTAKATFDVSPCRDV 240

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
            SW  M+ G+    +L +A  L  +MP +++ + TA++  Y ++  + +A  +FD +   
Sbjct: 241 ASWNAMMQGFAEEGQLQDAELLFQRMPKRDVVSATALVVAYARHGHITQARALFDGLPVR 300

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFR---------------------------------- 381
           D + WN MI  Y Q G   +A+NLF+                                  
Sbjct: 301 DTIAWNAMIAAYTQAGLALDALNLFKVMDLEAVPLDHASLSSALDACATLAALREGKLIH 360

Query: 382 ------QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEF 435
                 ++ + + +   ++I  YA+  ++ +A + F+ + K R+   WN +++ + QN  
Sbjct: 361 SSILHSELFHSNTIVATSLITMYARCARLCEAKRAFDGLTK-RDVPCWNTMVAAYSQNGL 419

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAH----------LAALQLGRQIHHLAIKSG 485
             ++L+IF  M  EG K   ++  C L++C+H            ALQL      +     
Sbjct: 420 FQESLEIFRTMEVEGHKPQSASFICILTSCSHGGLLTEALWYFTALQLVEDHGVVPTVDH 479

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAG 530
           Y+        +I + A+ G +  AE L      +P D ++W +L+ G
Sbjct: 480 YI-------CIIDLLARIGWLHQAEELLNTMPFEP-DSVAWMALLGG 518



 Score =  256 bits (654), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 132/408 (32%), Positives = 215/408 (52%), Gaps = 41/408 (10%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F+ N  I    ++G++  A   F +M  + +VT+N++++AYA+ G + ++  LF+ MP+R
Sbjct: 24  FSWNILILAYAQNGQIPLARDAFDRMPARTSVTWNTLLTAYARAGHMPESELLFKNMPER 83

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
            +V+WNS++  Y HN  +  A+ LFD M     +SW +MI  Y      + A   F+ +P
Sbjct: 84  GIVTWNSIVEAYAHNGLLARAKTLFDAMPERTAYSWNIMIQGYVDNSRFQSALAAFERMP 143

Query: 136 NKEDTACWNAMVAG-------------------------------YAKIGNYNEAKKLLD 164
            +  TA WN ++AG                               Y K G  + A+ + D
Sbjct: 144 QRS-TASWNTVLAGLVAAGHLREAERVFEATPHRDLHAHNTMVSAYCKAGALHRARDVFD 202

Query: 165 AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKF 224
            +P +N V WN++L  Y +NG++  A   F+    RDV SWN M+ G+ E   L  A   
Sbjct: 203 KVPHRNFVCWNALLQAYVQNGQLSTAKATFDVSPCRDVASWNAMMQGFAEEGQLQDAELL 262

Query: 225 FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA 284
           FQ++P+++VVS   ++  YAR+G + +AR LFD +P+R+ +AWNAMIAAY Q G   +A 
Sbjct: 263 FQRMPKRDVVSATALVVAYARHGHITQARALFDGLPVRDTIAWNAMIAAYTQAGLALDAL 322

Query: 285 RLF----IEMPERNPVSWTTMIDGYVRIAKLDEARR-----LLDQMPYKNIAAQTAMISG 335
            LF    +E    +  S ++ +D    +A L E +      L  ++ + N    T++I+ 
Sbjct: 323 NLFKVMDLEAVPLDHASLSSALDACATLAALREGKLIHSSILHSELFHSNTIVATSLITM 382

Query: 336 YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
           Y +  R+ EA + FD +   DV CWN M+  Y+Q G   E++ +FR M
Sbjct: 383 YARCARLCEAKRAFDGLTKRDVPCWNTMVAAYSQNGLFQESLEIFRTM 430



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 154/326 (47%), Gaps = 31/326 (9%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  +    + G++++A  +F +M +++ V+  +++ AYA++G +  AR LF+ +P 
Sbjct: 240 VASWNAMMQGFAEEGQLQDAELLFQRMPKRDVVSATALVVAYARHGHITQARALFDGLPV 299

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWAL--------MITCYT----RKG 122
           R+ ++WN+MIA Y       +A  LF  M   DL +  L        +  C T    R+G
Sbjct: 300 RDTIAWNAMIAAYTQAGLALDALNLFKVM---DLEAVPLDHASLSSALDACATLAALREG 356

Query: 123 ELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYT 182
           +L  +  L   L +  +T    +++  YA+     EAK+  D +  +++  WN+M++ Y+
Sbjct: 357 KLIHSSILHSELFHS-NTIVATSLITMYARCARLCEAKRAFDGLTKRDVPCWNTMVAAYS 415

Query: 183 KNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSA-WKF--FQKIPEQNVVS 235
           +NG    + + F  ME    +    S+  +L        L  A W F   Q + +  VV 
Sbjct: 416 QNGLFQESLEIFRTMEVEGHKPQSASFICILTSCSHGGLLTEALWYFTALQLVEDHGVVP 475

Query: 236 ----WVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARL---F 287
               ++ ++   AR G + +A  L + MP   + VAW A++     +  ++  AR+    
Sbjct: 476 TVDHYICIIDLLARIGWLHQAEELLNTMPFEPDSVAWMALLGGCKGQNDVQTGARVAKHV 535

Query: 288 IEMPERNPVSWTTMIDGYVRIAKLDE 313
            ++  R P  +  + + +   A  DE
Sbjct: 536 FQLQPRTPALYVLLSNTHASNAVEDE 561



 Score = 42.7 bits (99), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 52/115 (45%), Gaps = 7/115 (6%)

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           MY  CG + +A   F      +  SWN LI  YA NG    A   F+ M     A   VT
Sbjct: 1   MYGACGSLDDARTAFDRLAHPNAFSWNILILAYAQNGQIPLARDAFDRM----PARTSVT 56

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTE--VYAIEPLVEHYACMIDLLSRAGRLDEA 611
           +  +L+A +  G +     LF+ M E  +     +VE YA    LL+RA  L +A
Sbjct: 57  WNTLLTAYARAGHMPESELLFKNMPERGIVTWNSIVEAYA-HNGLLARAKTLFDA 110


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 232/747 (31%), Positives = 391/747 (52%), Gaps = 72/747 (9%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           N +++ Y++    + AR +F+++P    VSW+S++  Y +N   ++A   F  M      
Sbjct: 41  NHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVP 100

Query: 106 PDLFSWALMITCY--TRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
            + F+  +++ C    R G    A  +   L +  D    NA+VA Y   G  +EA+++ 
Sbjct: 101 CNEFALPVVLKCAPDVRFGAQVHALAVATRLVH--DVFVANALVAVYGGFGMVDEARRMF 158

Query: 164 DAM----PSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSWNLMLDGYVEL 215
           D        +N VSWN+M+S Y KN +   A   F  M    E  +   ++ +++     
Sbjct: 159 DEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGS 218

Query: 216 DDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
            DL++  +    +     E++V +   ++  Y++ G +  A  +F++MP  +VV+WNA I
Sbjct: 219 RDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFI 278

Query: 272 AAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
           +  V  G    A  L ++M       N  + ++++         +  R++   M  K +A
Sbjct: 279 SGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFM-VKAVA 337

Query: 328 -----AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
                    ++  Y ++  +D+A ++FD +   D++ WN +I G +  GR  E ++LF +
Sbjct: 338 DFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHR 397

Query: 383 M--------VNK---------------------------------DIVTWNTMIAGYAQI 401
           M        VN+                                 D    N +I  Y + 
Sbjct: 398 MRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKC 457

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
            Q+D A+K+F+E  +  + +S   +++   Q +   DA+K+FV M ++G + D   L+  
Sbjct: 458 GQLDYAIKVFKE-SRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSL 516

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           L+AC  L+A + G+Q+H   IK  + +D+F GN+L+  YAKCG I++A++ F       +
Sbjct: 517 LNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGI 576

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC 581
           +SW+++I G A +G+   A+ LF  M+ EGVAP+ +T   VLSAC+H GLVD   K FE 
Sbjct: 577 VSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFES 636

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIK 641
           M E + I+   EHYACMID+L RAG+L++A E+V  M  + NA +WG LLGA R+H++ +
Sbjct: 637 MKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPE 696

Query: 642 LGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVK 701
           LGR+A EKL  LEP+K+  + LL+N +A AG WDE+ KVR  M+ S  +K+P  SW+E+K
Sbjct: 697 LGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVEIK 756

Query: 702 NQIHTFLSGDPKQCRTAEICNTLKTLA 728
           +++HTF+ GD     T +I   L  L 
Sbjct: 757 DKVHTFIVGDKSHPMTRDIYGKLAELG 783



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 101/455 (22%), Positives = 182/455 (40%), Gaps = 105/455 (23%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           +K+  T N+++  Y+K G +  A  +FE+MP  ++VSWN+ I+G + +     A EL  +
Sbjct: 237 EKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQ 296

Query: 103 M----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGN 155
           M      P++F+ + ++      G     R++   +       D      +V  YAK G 
Sbjct: 297 MKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGF 356

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER--------------- 200
            ++A+K+ D MP ++++ WN+++SG + +G        F  M +                
Sbjct: 357 LDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVL 416

Query: 201 --------------------------DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
                                     D    N ++D Y +   LD A K F++    +++
Sbjct: 417 KSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDII 476

Query: 235 SWVTMLSGYARNGRMLEARRLFDQM------P---------------------------- 260
           S  TM++  ++     +A +LF QM      P                            
Sbjct: 477 SSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHL 536

Query: 261 -----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAK----L 311
                  +V A NA++ AY + G IE+A   F  +PER  VSW+ MI G  +       L
Sbjct: 537 IKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRAL 596

Query: 312 DEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF---------DKIGTHDVVCWNV 362
           D   R+LD+    N    T+++S       +D+A + F         D+   H    +  
Sbjct: 597 DLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEH----YAC 652

Query: 363 MIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIA 396
           MI    + G++++A+ L   M    +   W  ++ 
Sbjct: 653 MIDILGRAGKLEDAMELVNNMPFQANAAVWGALLG 687



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 88/405 (21%), Positives = 180/405 (44%), Gaps = 46/405 (11%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL---- 77
           +    K G +++A K+F  M +++ + +N++IS  + +GR  +   LF +M +  L    
Sbjct: 348 VDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDV 407

Query: 78  --VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWAL----MITCYTRKGELEKARELF 131
              +  S++     ++ +   R++     +  L S +     +I  Y + G+L+ A ++F
Sbjct: 408 NRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVF 467

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL----------DAMPSKNIVSWNSMLSGY 181
                 +D      M+   ++  +  +A KL           D+    ++++  + LS Y
Sbjct: 468 K-ESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAY 526

Query: 182 TKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
            +  ++H  +   +     DV + N ++  Y +   ++ A   F  +PE+ +VSW  M+ 
Sbjct: 527 EQGKQVH--AHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIG 584

Query: 242 GYARNGRMLEA----RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE----- 292
           G A++G    A     R+ D+    N +   ++++A    G +++A + F  M E     
Sbjct: 585 GLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGID 644

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDE-----ANQ 347
           R    +  MID   R  KL++A  L++ MP++  AA    + G  +  R  E     A +
Sbjct: 645 RTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEK 704

Query: 348 IF----DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
           +F    +K GTH      ++   YA  G  DE   + + M + ++
Sbjct: 705 LFTLEPEKSGTH-----VLLANTYASAGMWDEMAKVRKLMKDSNV 744



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 143/332 (43%), Gaps = 47/332 (14%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I    K G+++ AIK+F +    + ++  +M++A ++     DA KLF QM ++ L 
Sbjct: 448 NGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGL- 506

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
                                      PD F  + ++   T     E+ +++   L  ++
Sbjct: 507 --------------------------EPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQ 540

Query: 139 ---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
              D    NA+V  YAK G+  +A      +P + IVSW++M+ G  ++G    A   F 
Sbjct: 541 FTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFH 600

Query: 196 AMEERDVVSWNLMLDGYVELDD----LDSAWKFFQKIPEQNVVS-----WVTMLSGYARN 246
            M +  V   ++ L   +   +    +D A K+F+ + E   +      +  M+    R 
Sbjct: 601 RMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGRA 660

Query: 247 GRMLEARRLFDQMPIR-NVVAWNAMI-AAYVQR----GQIEEAARLFIEMPERNPVSWTT 300
           G++ +A  L + MP + N   W A++ A+ V R    G++  A +LF   PE++  +   
Sbjct: 661 GKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRM-AAEKLFTLEPEKSG-THVL 718

Query: 301 MIDGYVRIAKLDEARRLLDQMPYKNIAAQTAM 332
           + + Y      DE  ++   M   N+  + AM
Sbjct: 719 LANTYASAGMWDEMAKVRKLMKDSNVKKEPAM 750



 Score = 47.8 bits (112), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 77/184 (41%), Gaps = 17/184 (9%)

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD- 515
           T+  AL+      +L  G  +H   +KSG +      N L+T+Y++C     A  +F + 
Sbjct: 6   TIGSALARFGTSRSLFAGAHLHSHLLKSGLLAGF--SNHLLTLYSRCRLPSAARAVFDEI 63

Query: 516 ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL---V 572
            DP  V SW+SL+  Y+ NG   +A+  F  M   GV  +      VL     V     V
Sbjct: 64  PDPCHV-SWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAPDVRFGAQV 122

Query: 573 DGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA---FEMVKGMKIKPNAGIWGT 629
                    + +V+    LV  Y          G +DEA   F+   G+  + NA  W T
Sbjct: 123 HALAVATRLVHDVFVANALVAVYGGF-------GMVDEARRMFDEYVGVGGERNAVSWNT 175

Query: 630 LLGA 633
           ++ A
Sbjct: 176 MISA 179


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 232/735 (31%), Positives = 379/735 (51%), Gaps = 69/735 (9%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLH----NDKVKEARELFDKMFRP 106
           S+++ YAK      AR +  +MP R++VSW ++I G +     ND +   +E+ ++   P
Sbjct: 152 SLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMP 211

Query: 107 DLFSWALMITCYTRKGELEKAREL------FDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
           + F+ A  +   +    L+  +++        LL    D    +A+V  YAK G    A 
Sbjct: 212 NEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLL---DLFVGSALVDLYAKCGEIELAS 268

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELD 216
           K+   MP +N V+WN +L+GY + G++    K F +M E DV     +   +L G     
Sbjct: 269 KMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSK 328

Query: 217 DLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
           +L         I     E N      ++  Y++ G  ++A  +F  +   ++V W+A+I 
Sbjct: 329 NLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALIT 388

Query: 273 AYVQRGQIEEAARLF--IEMPERNPVSWT--TMIDGYVRIAKLDEARRLLDQM-PY---K 324
              Q+GQ EE+ +LF  + + +  P  +T  +++        L   + +   +  Y    
Sbjct: 389 CLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFET 448

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
           ++A   A+++ Y++N  + +  ++++ +   D++ WN  + G   CG  D  + +F  M+
Sbjct: 449 DVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHML 508

Query: 385 NKDIV---------------------------------------TWNTMIAGYAQIRQMD 405
            +  +                                           +I  YA+   ++
Sbjct: 509 EEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLE 568

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
           DA   F  +   R+  +W  +I+ + Q      AL  F  M QEG K +  TLA  LS C
Sbjct: 569 DADVAFNRL-SVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGC 627

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
           + LA+L+ G+Q+H +  KSG+V+D+FVG++L+ MYAKCG ++ AE LF+     D I+WN
Sbjct: 628 SSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWN 687

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
           ++I GYA NG   +A+  F  M+ EG++PD VTF G+LSACSH GLV+ G + F  M   
Sbjct: 688 TIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRD 747

Query: 586 YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI 645
           + I P V+H ACM+D+L R G+ DE  + ++ M++  NA IW T+LGA +MH N+ LG  
Sbjct: 748 FGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEK 807

Query: 646 AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705
           A  KL EL+P++ S Y LLSN+ A  GRWD+V++VR  M   G +K+PGCSW+E   Q+H
Sbjct: 808 AANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVH 867

Query: 706 TFLSGDPKQCRTAEI 720
           TF+S D    +  EI
Sbjct: 868 TFVSHDYSHPQIQEI 882



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 136/556 (24%), Positives = 245/556 (44%), Gaps = 60/556 (10%)

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           D+  W ++V  YAK      A+ +L  MP +++VSW +++ G    G  + +   F+ M+
Sbjct: 146 DSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQ 205

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ--------NVVSWVTMLSGYARNGRML 250
              ++     L   ++   L  A    +++  Q        ++     ++  YA+ G + 
Sbjct: 206 NEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIE 265

Query: 251 EARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYV 306
            A ++F  MP +N V WN ++  Y QRG +    +LF  M E     N  + TT++ G  
Sbjct: 266 LASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCA 325

Query: 307 RIAKLDEAR---RLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNV 362
               L + +    L+ +  Y+ N      ++  Y +     +A  +F  I   D+V W+ 
Sbjct: 326 NSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSA 385

Query: 363 MIKGYAQCGRMDEAINLFRQM--------------------------------------- 383
           +I    Q G+ +E+I LF  M                                       
Sbjct: 386 LITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYG 445

Query: 384 VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
              D+   N ++  Y +   + D  K++E M   R+ +SWNA +SG      +   L IF
Sbjct: 446 FETDVAVSNALVTMYMKNGCVHDGTKLYESM-VDRDLISWNAYLSGLHDCGMYDRPLTIF 504

Query: 444 VLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
             M +EG   +  T    L +C+ L  +  GRQ+H   IK+   ++ FV  +LI MYAKC
Sbjct: 505 YHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKC 564

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
             +++A++ F      D+ +W  +I  YA      +A+  F +M  EGV P+  T  G L
Sbjct: 565 MYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCL 624

Query: 564 SACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPN 623
           S CS +  ++GG +L   + +   +  +    A ++D+ ++ G ++EA  + + + I+ +
Sbjct: 625 SGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSA-LVDMYAKCGCMEEAEALFEAL-IRRD 682

Query: 624 AGIWGTLLGACRMHQN 639
              W T++  C   QN
Sbjct: 683 TIAWNTII--CGYAQN 696



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 120/517 (23%), Positives = 222/517 (42%), Gaps = 102/517 (19%)

Query: 26  GKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR----NLVSWN 81
            K G +E A K+F  M ++N VT+N +++ YA+ G V    KLF  M +     N  +  
Sbjct: 259 AKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLT 318

Query: 82  SMIAGYLHNDKVKEAREL-----------------------------------FDKMFRP 106
           +++ G  ++  +K+ + +                                   F  + +P
Sbjct: 319 TVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKP 378

Query: 107 DLFSWALMITCYTRKGELEKARELF------DLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
           D+  W+ +ITC  ++G+ E++ +LF      D LPN+  T C  ++++     GN    +
Sbjct: 379 DIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQY-TIC--SLLSAATNTGNLQYGQ 435

Query: 161 KLLDAM----PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELD 216
            +   +       ++   N++++ Y KNG +H  +K +E+M +RD++SWN  L G  +  
Sbjct: 436 SIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCG 495

Query: 217 DLDSAWKFFQKIPEQ----NVVSWVTMLSGYA-----RNGRMLEARRLFDQMPIRNVVAW 267
             D     F  + E+    N+ +++++L   +       GR + A  + +Q+   N V  
Sbjct: 496 MYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVC- 554

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
            A+I  Y +   +E+A   F  +  R+  +WT +I  Y +  + ++A     QM  + + 
Sbjct: 555 TALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVK 614

Query: 328 AQ----TAMISGYVQNKRMDEANQ----IFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
                    +SG      ++   Q    +F      D+   + ++  YA+CG M+EA  L
Sbjct: 615 PNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEAL 674

Query: 380 FRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDA 439
           F  ++ +D + WNT+I GYAQ  Q +                                 A
Sbjct: 675 FEALIRRDTIAWNTIICGYAQNGQGN--------------------------------KA 702

Query: 440 LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ 476
           L  F +M  EG   D  T    LSAC+H   ++ G++
Sbjct: 703 LTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKE 739



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 74/358 (20%), Positives = 156/358 (43%), Gaps = 58/358 (16%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTV---------------------------------- 47
           IT L + G+ EE+IK+F  M   +T+                                  
Sbjct: 387 ITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGF 446

Query: 48  -----TYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGY----LHNDKVKEARE 98
                  N++++ Y KNG V+D  KL+E M  R+L+SWN+ ++G     +++  +     
Sbjct: 447 ETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYH 506

Query: 99  LFDKMFRPDLFSWALMITCYTRKGELEKARELF-DLLPNKEDTACW--NAMVAGYAKIGN 155
           + ++ F P+++++  ++   +   ++   R++   ++ N+ D   +   A++  YAK   
Sbjct: 507 MLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMY 566

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV-- 213
             +A    + +  +++ +W  +++ Y +  +   A  +F  M++  V      L G +  
Sbjct: 567 LEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSG 626

Query: 214 --ELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
              L  L+   +    + +   VS +     ++  YA+ G M EA  LF+ +  R+ +AW
Sbjct: 627 CSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAW 686

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           N +I  Y Q GQ  +A   F  M +     + V++T ++        ++E +   + M
Sbjct: 687 NTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSM 744



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 6/172 (3%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           L  CA   +L + + IH L +K     D  +  SL+ +YAKC     A L+       DV
Sbjct: 119 LRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDV 178

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC 581
           +SW +LI G    G A ++I LF+EM  EG+ P+  T    L ACS    +D G ++   
Sbjct: 179 VSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMH-- 236

Query: 582 MTEVYAIEPLVEHY--ACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
             + + +  L++ +  + ++DL ++ G ++ A +M  GM  + N   W  LL
Sbjct: 237 -AQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMP-EQNDVTWNVLL 286



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 118/261 (45%), Gaps = 23/261 (8%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           I    K   +E+A   F+++S ++  T+  +I+ YA+  +   A   F QM Q  +    
Sbjct: 558 IDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNE 617

Query: 82  SMIAGYLHN----DKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDL 133
             +AG L        ++  ++L   +F+     D+F  + ++  Y + G +E+A  LF+ 
Sbjct: 618 FTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEA 677

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEA----KKLLDAMPSKNIVSWNSMLS-----GYTKN 184
           L  + DT  WN ++ GYA+ G  N+A    + +LD   S + V++  +LS     G  + 
Sbjct: 678 LI-RRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEE 736

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSWVTMLSGY 243
           G+ H  S + +      V     M+D    +   D    F QK+   QN + W T+L   
Sbjct: 737 GKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGAS 796

Query: 244 ARNGRML----EARRLFDQMP 260
             +  ++     A +LF+  P
Sbjct: 797 KMHNNLVLGEKAANKLFELQP 817



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 36/198 (18%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F  +  +    K G +EEA  +F  + +++T+ +N++I  YA+NG+ N A   F  M
Sbjct: 650 SDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMM 709

Query: 73  PQRNL----VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAR 128
               +    V++  +++   H   V+E +E F+ M+R                       
Sbjct: 710 LDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRD---------------------- 747

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNGEM 187
             F + P  +  AC   MV    ++G ++E +  +  M  S+N + W ++L     +  +
Sbjct: 748 --FGISPTVDHCAC---MVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNL 802

Query: 188 HL----ASKFFEAMEERD 201
            L    A+K FE   E +
Sbjct: 803 VLGEKAANKLFELQPEEE 820


>gi|357475531|ref|XP_003608051.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509106|gb|AES90248.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 763

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 232/685 (33%), Positives = 366/685 (53%), Gaps = 61/685 (8%)

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           + P + S  + I  + + G+L +AR +FD +P +   + WN M++GY++ G Y EA  L+
Sbjct: 33  YPPHVISTNISIAHHAKTGKLVEARHMFDEMPLR-TVSSWNTMISGYSQWGKYTEALTLV 91

Query: 164 DAMPSK----NIVSWNSMLSGYTKNGEMHLA----SKFFEAMEERDVVSWNLMLDGYVEL 215
             M S     N VS+++ LS  T+ G + L     S  F++  +R     + +L  YV+ 
Sbjct: 92  SFMHSSCVKFNEVSFSACLSACTRGGSLFLGKQIHSLLFKSGYQRFGPVGSALLHYYVQC 151

Query: 216 DDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
             +  A   F+++ ++N V W  ML+GY +   + +A  +F++MP+R+VVAW  +I+ Y 
Sbjct: 152 CGIREAEMVFEELRDENHVLWSLMLAGYVQRDMIGDAMEIFEKMPVRDVVAWTTLISGYA 211

Query: 276 QRGQ-IEEAARLFIEM---PERNPVSWTTMIDGYVRIAK--------------------- 310
           +R    E A  LF  M    E  P  +T  +D  +R+                       
Sbjct: 212 KREDGCERALDLFGCMRRSSEVLPNEFT--LDCVLRVCARLRILYVGKVVHGLCIKDGFD 269

Query: 311 ------------------LDEARRLLDQM---PYKNIAAQTAMISGYVQNKRMDEANQIF 349
                             +D+A+R+ + M      N+A   ++I G V   R+ EA  IF
Sbjct: 270 FDNSVSSALAEFYCVSDAVDDAKRVYESMVGEACSNVA--DSLIGGLVSMGRVKEAGMIF 327

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVK 409
             +    ++  N+MIKGYA  G+  ++  LF +M  K + + NTMI  Y++  ++D+AVK
Sbjct: 328 YGLRDKTLISNNLMIKGYAMSGQFKKSKKLFEKMSLKHLTSLNTMITVYSKNGELDEAVK 387

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           +F++    RN V+WN+++SG++ N  H +ALK++V M +   +   ST +    ACA+L 
Sbjct: 388 LFDKTKGERNCVTWNSMMSGYIHNGEHSEALKLYVTMRRFLVEYSRSTFSVLFRACAYLC 447

Query: 470 ALQLGRQIH-HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
           + Q G+ +H HLA K+ Y  +++VG +L+  Y+KCG + +A+  F      +V +W +LI
Sbjct: 448 SFQQGQLLHAHLA-KTPYQENVYVGTALVDFYSKCGHLADAQRSFTSIFSPNVAAWTALI 506

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI 588
            GYA +G  +EAI  F  M+ +GV P+  TF+ VLSACSH GLVD GLK F  M   Y I
Sbjct: 507 NGYAYHGCGSEAISRFRSMLDQGVVPNAATFVAVLSACSHAGLVDEGLKFFHSMQINYRI 566

Query: 589 EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVE 648
            P +EHY C++DLL R+GR+ EA E +  M IK +  IWG LL A     N++LG  A  
Sbjct: 567 TPTIEHYTCVVDLLGRSGRVKEAEEFIIQMPIKADGVIWGALLNASCFWNNVELGERAAV 626

Query: 649 KLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFL 708
           KL  L+P   S    LSNM+A  GRW +  K+R  ++    +K  G SWIE+ N +H F 
Sbjct: 627 KLFSLDPNSVSALVTLSNMYARRGRWGKKTKIRKRLQSLELRKDQGFSWIELNNNVHLFS 686

Query: 709 SGDPKQCRTAEICNTLKTLAAQIRN 733
             D     +  I  T++ + A I +
Sbjct: 687 VEDTTHPYSDVIYKTVEHITATINS 711



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 105/409 (25%), Positives = 207/409 (50%), Gaps = 27/409 (6%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL-H 89
           + EA  +F ++  +N V ++ M++ Y +   + DA ++FE+MP R++V+W ++I+GY   
Sbjct: 154 IREAEMVFEELRDENHVLWSLMLAGYVQRDMIGDAMEIFEKMPVRDVVAWTTLISGYAKR 213

Query: 90  NDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTA 141
            D  + A +LF  M R     P+ F+   ++    R   L   + +  L        D +
Sbjct: 214 EDGCERALDLFGCMRRSSEVLPNEFTLDCVLRVCARLRILYVGKVVHGLCIKDGFDFDNS 273

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAM---PSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
             +A+   Y      ++AK++ ++M      N+   +S++ G    G +  A   F  + 
Sbjct: 274 VSSALAEFYCVSDAVDDAKRVYESMVGEACSNVA--DSLIGGLVSMGRVKEAGMIFYGLR 331

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
           ++ ++S NLM+ GY        + K F+K+  +++ S  TM++ Y++NG + EA +LFD+
Sbjct: 332 DKTLISNNLMIKGYAMSGQFKKSKKLFEKMSLKHLTSLNTMITVYSKNGELDEAVKLFDK 391

Query: 259 MP-IRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDE 313
               RN V WN+M++ Y+  G+  EA +L++ M     E +  +++ +      +    +
Sbjct: 392 TKGERNCVTWNSMMSGYIHNGEHSEALKLYVTMRRFLVEYSRSTFSVLFRACAYLCSFQQ 451

Query: 314 ARRL---LDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ 369
            + L   L + PY+ N+   TA++  Y +   + +A + F  I + +V  W  +I GYA 
Sbjct: 452 GQLLHAHLAKTPYQENVYVGTALVDFYSKCGHLADAQRSFTSIFSPNVAAWTALINGYAY 511

Query: 370 CGRMDEAINLFRQMVNKDIV----TWNTMIAGYAQIRQMDDAVKIFEEM 414
            G   EAI+ FR M+++ +V    T+  +++  +    +D+ +K F  M
Sbjct: 512 HGCGSEAISRFRSMLDQGVVPNAATFVAVLSACSHAGLVDEGLKFFHSM 560



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 132/623 (21%), Positives = 266/623 (42%), Gaps = 87/623 (13%)

Query: 14  YVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP 73
           +V + N  I    K+G++ EA  +F +M  +   ++N+MIS Y++ G+  +A  L   M 
Sbjct: 36  HVISTNISIAHHAKTGKLVEARHMFDEMPLRTVSSWNTMISGYSQWGKYTEALTLVSFMH 95

Query: 74  QR----NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSW----ALMITCYTRKGELE 125
                 N VS+++ ++       +   +++   +F+     +    + ++  Y +   + 
Sbjct: 96  SSCVKFNEVSFSACLSACTRGGSLFLGKQIHSLLFKSGYQRFGPVGSALLHYYVQCCGIR 155

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
           +A  +F+ L + E+   W+ M+AGY +     +A ++ + MP +++V+W +++SGY K  
Sbjct: 156 EAEMVFEELRD-ENHVLWSLMLAGYVQRDMIGDAMEIFEKMPVRDVVAWTTLISGYAKRE 214

Query: 186 E-MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG-- 242
           +    A   F  M     V     L     LD +       + +    VV  + +  G  
Sbjct: 215 DGCERALDLFGCMRRSSEV-----LPNEFTLDCVLRVCARLRILYVGKVVHGLCIKDGFD 269

Query: 243 ------------YARNGRMLEARRLFDQM---PIRNVVAWNAMIAAYVQRGQIEEAARLF 287
                       Y  +  + +A+R+++ M      NV   +++I   V  G+++EA  +F
Sbjct: 270 FDNSVSSALAEFYCVSDAVDDAKRVYESMVGEACSNVA--DSLIGGLVSMGRVKEAGMIF 327

Query: 288 IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347
             + ++  +S   MI GY    +  ++++L ++M  K++ +   MI+ Y +N  +DEA +
Sbjct: 328 YGLRDKTLISNNLMIKGYAMSGQFKKSKKLFEKMSLKHLTSLNTMITVYSKNGELDEAVK 387

Query: 348 IFDKI-GTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----------------------- 383
           +FDK  G  + V WN M+ GY   G   EA+ L+  M                       
Sbjct: 388 LFDKTKGERNCVTWNSMMSGYIHNGEHSEALKLYVTMRRFLVEYSRSTFSVLFRACAYLC 447

Query: 384 ----------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
                             +++     ++  Y++   + DA + F  +    N  +W ALI
Sbjct: 448 SFQQGQLLHAHLAKTPYQENVYVGTALVDFYSKCGHLADAQRSFTSIFS-PNVAAWTALI 506

Query: 428 SGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG-RQIHHLAIKSGY 486
           +G+  +    +A+  F  M  +G   + +T    LSAC+H   +  G +  H + I    
Sbjct: 507 NGYAYHGCGSEAISRFRSMLDQGVVPNAATFVAVLSACSHAGLVDEGLKFFHSMQINYRI 566

Query: 487 VNDLFVGNSLITMYAKCGRIQNA-ELLFKDADPVDVISWNSLIAGYAINGNAT----EAI 541
              +     ++ +  + GR++ A E + +     D + W +L+       N       A+
Sbjct: 567 TPTIEHYTCVVDLLGRSGRVKEAEEFIIQMPIKADGVIWGALLNASCFWNNVELGERAAV 626

Query: 542 KLFEEMVMEGVAPDPVTFIGVLS 564
           KLF       + P+ V+ +  LS
Sbjct: 627 KLFS------LDPNSVSALVTLS 643



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 161/321 (50%), Gaps = 22/321 (6%)

Query: 2   KASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGR 61
           +A +   G +   + + N  I     SG+ +++ K+F +MS K+  + N+MI+ Y+KNG 
Sbjct: 322 EAGMIFYGLRDKTLISNNLMIKGYAMSGQFKKSKKLFEKMSLKHLTSLNTMITVYSKNGE 381

Query: 62  VNDARKLFEQMP-QRNLVSWNSMIAGYLHNDKVKEARELFDKMFR------PDLFSW--- 111
           +++A KLF++   +RN V+WNSM++GY+HN +  EA +L+  M R         FS    
Sbjct: 382 LDEAVKLFDKTKGERNCVTWNSMMSGYIHNGEHSEALKLYVTMRRFLVEYSRSTFSVLFR 441

Query: 112 ALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI 171
           A    C  ++G+L  A       P +E+     A+V  Y+K G+  +A++   ++ S N+
Sbjct: 442 ACAYLCSFQQGQLLHAH--LAKTPYQENVYVGTALVDFYSKCGHLADAQRSFTSIFSPNV 499

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAMEERDVV----SWNLMLDGYVELDDLDSAWKFFQK 227
            +W ++++GY  +G    A   F +M ++ VV    ++  +L        +D   KFF  
Sbjct: 500 AAWTALINGYAYHGCGSEAISRFRSMLDQGVVPNAATFVAVLSACSHAGLVDEGLKFFHS 559

Query: 228 IP-----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE 281
           +         +  +  ++    R+GR+ EA     QMPI+ + V W A++ A      +E
Sbjct: 560 MQINYRITPTIEHYTCVVDLLGRSGRVKEAEEFIIQMPIKADGVIWGALLNASCFWNNVE 619

Query: 282 EAARLFIEMPERNPVSWTTMI 302
              R  +++   +P S + ++
Sbjct: 620 LGERAAVKLFSLDPNSVSALV 640


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 236/786 (30%), Positives = 404/786 (51%), Gaps = 64/786 (8%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  N  I    K   +E A K+F +M Q++ V++N+M+   A  GR+  A+ +F  MP 
Sbjct: 59  VFVTNCLIQMYVKCCALEYAYKVFEEMPQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPH 118

Query: 75  R-NLVSWNSMIAGYLHNDKVKEARELFDKM------FRPDLFSWALMITCYTRKGELE-K 126
             ++VSWNS+I+GYL N  ++++  +F KM      F     + +L I        L  +
Sbjct: 119 HGDVVSWNSLISGYLQNGDIQKSIAVFLKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQ 178

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
              +   +    D    +A+V  YAK  +  ++  +   +P KN +SW++ ++G  +N +
Sbjct: 179 IHGIAVQMGFDYDVVTGSALVDMYAKCNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQ 238

Query: 187 MHLASKFFEAMEER---------------------------------------DVVSWNL 207
           +    K F+ M+ +                                       DV+    
Sbjct: 239 LLRGLKLFKEMQRKGIGVSQSTYASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTA 298

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM-----PIR 262
            LD Y + D++  A+K F  +P+ N+ S+  M+ GYARN +  +A +LF Q+        
Sbjct: 299 TLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFD 358

Query: 263 NVVAWNAMIAAYVQRGQIE--EAARLFIEMP-ERNPVSWTTMIDGYVRIAKLDEARRLLD 319
            V    A+ AA V +G  E  +   L I+     N      ++D Y +   L EA  L D
Sbjct: 359 EVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFD 418

Query: 320 QMPYKNIAAQTAMISGYVQN----KRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
           +M  ++  +  A+I+   QN    K +     +       D   +  ++K  A       
Sbjct: 419 EMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSN 478

Query: 376 AINLFRQMVNK----DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFL 431
            + +  +++       +   + ++  Y++   M++A KI   + + +  VSWNA+ISGF 
Sbjct: 479 GMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRL-EEQTMVSWNAIISGFS 537

Query: 432 QNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLF 491
             +   D+ + F  M + G + D+ T A  L  CA+LA + LG+QIH   IK   ++D++
Sbjct: 538 LQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIHAQMIKLELLSDVY 597

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
           + ++L+ MY+KCG + ++ L+F+ A   D ++WN++I G+A +G   EA++LFE M+ E 
Sbjct: 598 ITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMICGFAYHGLGEEALELFEHMLHEN 657

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
           + P+  TF+ VL ACSHVG    GL  F+ M  +YA+EP +EHY+CM+D+L R+G+++EA
Sbjct: 658 IKPNHATFVSVLRACSHVGNAKKGLFYFQKMASIYALEPQLEHYSCMVDILGRSGQVEEA 717

Query: 612 FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEA 671
             +++ M  + +A IW TLL  C++  N+++   A   L +L+P+ +S Y LLSN++A+A
Sbjct: 718 LRLIQDMPFEADAIIWRTLLSICKIQGNVEVAEKAASSLLKLDPEDSSAYTLLSNIYADA 777

Query: 672 GRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           G W +V K+R +M     +K+PGCSWIEVK+++HTFL  D    +   I + L  L   +
Sbjct: 778 GMWQQVSKIRQTMRSHNLKKEPGCSWIEVKDEVHTFLVCDKAHPKCEMIYSLLDLLICDM 837

Query: 732 RNTPLA 737
           R +  A
Sbjct: 838 RRSGCA 843



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 76/214 (35%), Positives = 123/214 (57%)

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEE 413
           T  V   N +I+ Y +C  ++ A  +F +M  +DIV+WNTM+ G A   +M+ A  +F  
Sbjct: 56  TPTVFVTNCLIQMYVKCCALEYAYKVFEEMPQRDIVSWNTMVFGCAGAGRMELAQAVFNS 115

Query: 414 MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQL 473
           M    + VSWN+LISG+LQN     ++ +F+ M   G   DH+TLA +L  C+ L    L
Sbjct: 116 MPHHGDVVSWNSLISGYLQNGDIQKSIAVFLKMRDLGVMFDHTTLAVSLKICSLLEDQVL 175

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           G QIH +A++ G+  D+  G++L+ MYAKC  ++++  +F +    + ISW++ IAG   
Sbjct: 176 GIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLEDSLDVFSELPDKNWISWSAAIAGCVQ 235

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
           N      +KLF+EM  +G+     T+  V  +C+
Sbjct: 236 NDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCA 269



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 173/396 (43%), Gaps = 46/396 (11%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS V      +    K   + +A K+FS +   N  +YN+MI  YA+N +   A KLF Q
Sbjct: 290 GSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQ 349

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           + Q+N  S                    FD++      S A +I  ++   +L       
Sbjct: 350 L-QKNSFS--------------------FDEVSLSGALSAAAVIKGHSEGLQLHG----L 384

Query: 132 DLLPNKEDTAC-WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
            +  N     C  NA++  Y K G   EA  L D M  ++ VSWN++++   +N      
Sbjct: 385 AIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKT 444

Query: 191 SKFFEAM----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG---- 242
              F AM     E D  ++  +L          +  +   +I +  +   + M  G    
Sbjct: 445 LSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGM--GLKMFVGSALV 502

Query: 243 --YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPV 296
             Y++ G M EA ++  ++  + +V+WNA+I+ +  + + E++ R F  M     E +  
Sbjct: 503 DMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNF 562

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMP----YKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
           ++ T++D    +A +   +++  QM       ++   + ++  Y +   M ++  +F K 
Sbjct: 563 TYATVLDTCANLATVGLGKQIHAQMIKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKA 622

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
              D V WN MI G+A  G  +EA+ LF  M++++I
Sbjct: 623 PKRDSVTWNAMICGFAYHGLGEEALELFEHMLHENI 658



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 76/158 (48%), Gaps = 9/158 (5%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V+  +  +    K G + +++ +F +  ++++VT+N+MI  +A +G   +A +LFE M
Sbjct: 594 SDVYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMICGFAYHGLGEEALELFEHM 653

Query: 73  PQRNL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGE 123
              N+     ++ S++    H    K+    F KM       P L  ++ M+    R G+
Sbjct: 654 LHENIKPNHATFVSVLRACSHVGNAKKGLFYFQKMASIYALEPQLEHYSCMVDILGRSGQ 713

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKK 161
           +E+A  L   +P + D   W  +++     GN   A+K
Sbjct: 714 VEEALRLIQDMPFEADAIIWRTLLSICKIQGNVEVAEK 751



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 32/143 (22%)

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
           T +     C++  AL+ G++ H   I SG+   +FV N LI MY KC  ++ A  +F++ 
Sbjct: 26  TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85

Query: 517 DPVDVISWN--------------------------------SLIAGYAINGNATEAIKLF 544
              D++SWN                                SLI+GY  NG+  ++I +F
Sbjct: 86  PQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVF 145

Query: 545 EEMVMEGVAPDPVTFIGVLSACS 567
            +M   GV  D  T    L  CS
Sbjct: 146 LKMRDLGVMFDHTTLAVSLKICS 168


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 230/739 (31%), Positives = 386/739 (52%), Gaps = 61/739 (8%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL- 108
           N +IS Y+K  R   AR++F+++P    VSW+S++  Y +N   + A + F  M    + 
Sbjct: 41  NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVC 100

Query: 109 ---FSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLD- 164
              F+  +++ C        +   +        D    NA+VA Y   G  ++A+++ D 
Sbjct: 101 CNEFALPVVLKCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDE 160

Query: 165 AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDS 220
           A   +N VSWN ++S Y KN +   A + F  M    +      ++ +++      ++D+
Sbjct: 161 AGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDA 220

Query: 221 AWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ 276
             +    +     E++V +   ++  Y + GR+  A  +F++MP  +VV+WNA+I+  V 
Sbjct: 221 GRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVL 280

Query: 277 RGQIEEAARLFIEMPERNPVSWTTMIDGYVRI----AKLDEARRLLDQMPYKNIAAQ--- 329
            G    A  L ++M     V    M+   ++        D  R++   M   N  +    
Sbjct: 281 NGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYI 340

Query: 330 -TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----- 383
              ++  Y +N  +D+A ++FD +   D++ WN +I G +  GR DEA ++F  +     
Sbjct: 341 GVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGL 400

Query: 384 -VNK---------------------------------DIVTWNTMIAGYAQIRQMDDAVK 409
            VN+                                 D    N +I  Y +   + DA++
Sbjct: 401 GVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIR 460

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           +FEE     + ++  ++I+   Q +    A+K+F+ M ++G + D   L+  L+ACA L+
Sbjct: 461 VFEECSSG-DIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLS 519

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
           A + G+Q+H   IK  +++D F GN+L+  YAKCG I++AEL F       V+SW+++I 
Sbjct: 520 AYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIG 579

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE 589
           G A +G+   A++LF  MV EG+ P+ +T   VL AC+H GLVD   + F  M E++ I+
Sbjct: 580 GLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGID 639

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649
              EHY+CMIDLL RAG+LD+A E+V  M  + NA +WG LLGA R+H++ +LG++A EK
Sbjct: 640 RTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEK 699

Query: 650 LSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLS 709
           L  LEP+K+  + LL+N +A +G W+EV KVR  M+ S  +K+P  SW+EVK+++HTF+ 
Sbjct: 700 LFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIV 759

Query: 710 GDPKQCRTAEICNTLKTLA 728
           GD     T EI + L  L 
Sbjct: 760 GDKSHPMTKEIYSKLDELG 778



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 121/515 (23%), Positives = 223/515 (43%), Gaps = 87/515 (16%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQM-SQKNTVTYNSMISAYAKNGRVNDARKLFE 70
           GS VF  N  +   G  G +++A ++F +  S++N V++N ++SAY KN +  DA ++F 
Sbjct: 132 GSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFG 191

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
           +M       W+ +                     +P  F ++ ++   T    ++  R++
Sbjct: 192 EM------VWSGI---------------------QPTEFGFSCVVNACTGSRNIDAGRQV 224

Query: 131 FDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
             ++     ++D    NA+V  Y K+G  + A  + + MP  ++VSWN+++SG   NG  
Sbjct: 225 HAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD 284

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI--------PEQNVVSWVTM 239
           H A +    M+   +V    ML   ++      A+   ++I         + +    V +
Sbjct: 285 HRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGL 344

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM-PERNPVSW 298
           +  YA+N  + +A ++FD M  R+++ WNA+I+     G+ +EA  +F  +  E   V+ 
Sbjct: 345 VDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNR 404

Query: 299 TTMIDGYVRIAKLD--EARRLLDQMPYK-----NIAAQTAMISGYVQNKRMDEANQIFDK 351
           TT+       A L+   A R +  +  K     +      +I  Y +   + +A ++F++
Sbjct: 405 TTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEE 464

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK------------------------- 386
             + D++    MI   +QC   + AI LF +M+ K                         
Sbjct: 465 CSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQG 524

Query: 387 --------------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
                         D    N ++  YA+   ++DA   F  +   R  VSW+A+I G  Q
Sbjct: 525 KQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSL-PERGVVSWSAMIGGLAQ 583

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
           +     AL++F  M  EG   +H T+   L AC H
Sbjct: 584 HGHGKRALELFGRMVDEGINPNHITMTSVLCACNH 618



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 192/402 (47%), Gaps = 33/402 (8%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           +K+  T N+++  Y K GRV+ A  +FE+MP  ++VSWN++I+G + N     A EL  +
Sbjct: 234 EKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQ 293

Query: 103 M----FRPDLFSWALMITCYTRKGELEKAREL--FDLLPNKE-DTACWNAMVAGYAKIGN 155
           M      P++F  + ++      G  +  R++  F +  N + D      +V  YAK   
Sbjct: 294 MKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHF 353

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDG 211
            ++A K+ D M  ++++ WN+++SG +  G    A   F  + +  +     +   +L  
Sbjct: 354 LDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKS 413

Query: 212 YVELDDLDSAWKFFQKIPEQ-------NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV 264
              L +  SA +    + E+       +VV+   ++  Y +   + +A R+F++    ++
Sbjct: 414 TASL-EAASATRQVHALAEKIGFIFDAHVVN--GLIDSYWKCSCLSDAIRVFEECSSGDI 470

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARR---- 316
           +A  +MI A  Q    E A +LF+EM     E +P   +++++    ++  ++ ++    
Sbjct: 471 IAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAH 530

Query: 317 LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
           L+ +    +  A  A++  Y +   +++A   F  +    VV W+ MI G AQ G    A
Sbjct: 531 LIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRA 590

Query: 377 INLFRQMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEM 414
           + LF +MV++ I    +T  +++        +D+A + F  M
Sbjct: 591 LELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSM 632



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 14/161 (8%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S  F  N  +    K G +E+A   FS + ++  V++++MI   A++G    A +LF +M
Sbjct: 538 SDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRM 597

Query: 73  PQR----NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFS-------WALMITCYTRK 121
                  N ++  S++    H   V EA+  F+ M   ++F        ++ MI    R 
Sbjct: 598 VDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSM--KEMFGIDRTEEHYSCMIDLLGRA 655

Query: 122 GELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKL 162
           G+L+ A EL + +P + + + W A++ G +++    E  KL
Sbjct: 656 GKLDDAMELVNSMPFQANASVWGALL-GASRVHKDPELGKL 695


>gi|302820798|ref|XP_002992065.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
 gi|300140187|gb|EFJ06914.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
          Length = 771

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 224/663 (33%), Positives = 377/663 (56%), Gaps = 30/663 (4%)

Query: 92  KVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKARELFDL--LPNKEDTACWNA 145
           K+ EA+ L D++ R     +     L+I  + + G+ + AR +F+   LPN+     W+ 
Sbjct: 22  KLHEAKILHDEIARSPHGDNRRLTNLLIDLFGKCGDPDAARAVFNRVRLPNEYS---WSC 78

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM-EERDVVS 204
           ++  Y      ++A+ L D+MP  +  +WN M++ Y +   +  A + F  M   RDVVS
Sbjct: 79  IIQAYVSSSRIHDARALFDSMPGFDAFTWNIMIAAYARINRLDDARELFHGMISGRDVVS 138

Query: 205 WNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP---I 261
           W +++ GY   D L+ A   F+++P  + V+  ++L GYA NG + EA+ LFD++     
Sbjct: 139 WAILVAGYARHDRLEEASALFRRMPLWDTVTCTSVLQGYAHNGHLAEAQELFDRIGGAGD 198

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           R+  A NAMIAAY +  +++ A  LF ++  RN  SW+ ++  Y +   LD A++  D+M
Sbjct: 199 RDATACNAMIAAYGKNARVDLAEGLFAQIKLRNAASWSLLLLTYAQNGHLDLAKKSFDRM 258

Query: 322 PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
           P ++  A TAM +       +  A ++   +   DV+ WN +++GY++ G +DE   LF 
Sbjct: 259 PQRDSIAFTAMTAVLSDQGELRGAREMLRYLSAVDVIAWNALLEGYSRTGDLDEVRRLFS 318

Query: 382 QMVNKDIVTWNTMIAG-----YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
            M ++ + T  T++AG     Y +  ++DDA ++ + M   R +VSW A+I+ + QN   
Sbjct: 319 AMEHRTVAT--TVVAGTLVNLYGKCGRVDDARRVLDAM-PVRTSVSWTAMIAAYAQNGNA 375

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG--YVNDLFVGN 494
            +A+ +F  M  EG +    TL   + +CA L  L LG++I H  I+S   +   L + N
Sbjct: 376 AEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRI-HARIRSSPLFSQSLMLLN 434

Query: 495 SLITMYAKCGRIQNAELLFKDADPV---DVISWNSLIAGYAINGNATEAIKLFEEMVME- 550
           ++ITMY KCG ++ A  +F+   P+    V++W ++I  YA NG   EAI+LF+EMV++ 
Sbjct: 435 AVITMYGKCGNLELAREVFESV-PLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMVIDG 493

Query: 551 GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDE 610
           G  P+ VTF+ VLSACSH+G ++   + F  M   + + P  +HY C++DLL RAGRL E
Sbjct: 494 GTEPNRVTFLSVLSACSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGE 553

Query: 611 AFEMVKGMK-IKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHA 669
           A +++   K  + +   W   L AC+M+ +++  + A +++SELEP+  +   LLSN++A
Sbjct: 554 AEKLLLRHKDFEADVVCWIAFLSACQMNGDLERSQRAAKRVSELEPENVAGRVLLSNVYA 613

Query: 670 EAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAA 729
             GR  +V ++R  M+ SG +K  G SWIE+ N++H F+  D    R  EI + L+ L  
Sbjct: 614 AKGRRADVARIRNEMKSSGVKKFAGRSWIEINNRVHEFMVSDVSHPRKLEIYSELERLHR 673

Query: 730 QIR 732
           +I+
Sbjct: 674 EIK 676



 Score =  248 bits (632), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 165/567 (29%), Positives = 294/567 (51%), Gaps = 36/567 (6%)

Query: 19  NKKITQL-----GKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP 73
           N+++T L     GK G  + A  +F+++   N  +++ +I AY  + R++DAR LF+ MP
Sbjct: 41  NRRLTNLLIDLFGKCGDPDAARAVFNRVRLPNEYSWSCIIQAYVSSSRIHDARALFDSMP 100

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP-DLFSWALMITCYTRKGELEKARELFD 132
             +  +WN MIA Y   +++ +ARELF  M    D+ SWA+++  Y R   LE+A  LF 
Sbjct: 101 GFDAFTWNIMIAAYARINRLDDARELFHGMISGRDVVSWAILVAGYARHDRLEEASALFR 160

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS---KNIVSWNSMLSGYTKNGEMHL 189
            +P  +   C  +++ GYA  G+  EA++L D +     ++  + N+M++ Y KN  + L
Sbjct: 161 RMPLWDTVTC-TSVLQGYAHNGHLAEAQELFDRIGGAGDRDATACNAMIAAYGKNARVDL 219

Query: 190 ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRM 249
           A   F  ++ R+  SW+L+L  Y +   LD A K F ++P+++ +++  M +  +  G +
Sbjct: 220 AEGLFAQIKLRNAASWSLLLLTYAQNGHLDLAKKSFDRMPQRDSIAFTAMTAVLSDQGEL 279

Query: 250 LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER---NPVSWTTMIDGYV 306
             AR +   +   +V+AWNA++  Y + G ++E  RLF  M  R     V   T+++ Y 
Sbjct: 280 RGAREMLRYLSAVDVIAWNALLEGYSRTGDLDEVRRLFSAMEHRTVATTVVAGTLVNLYG 339

Query: 307 RIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF---DKIGTH--DVVCWN 361
           +  ++D+ARR+LD MP +   + TAMI+ Y QN    EA  +F   D  G    D+   +
Sbjct: 340 KCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLIS 399

Query: 362 VM----IKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
           V+    + G    G+   A      + ++ ++  N +I  Y +   ++ A ++FE +  R
Sbjct: 400 VVDSCAVLGTLSLGKRIHARIRSSPLFSQSLMLLNAVITMYGKCGNLELAREVFESVPLR 459

Query: 418 -RNTVSWNALISGFLQNEFHLDALKIFVLMTQE-GKKADHSTLACALSACAHLAALQLGR 475
            R+ V+W A+I  + QN    +A+++F  M  + G + +  T    LSAC+HL  L+   
Sbjct: 460 TRSVVTWTAMIRAYAQNGVGEEAIELFQEMVIDGGTEPNRVTFLSVLSACSHLGQLEQAW 519

Query: 476 QIHHLAIKSGY----VNDLFVGNSLITMYAKCGRIQNAE-LLFKDAD-PVDVISWNSLIA 529
           + H  ++   +      D +    L+ +  + GR+  AE LL +  D   DV+ W + ++
Sbjct: 520 E-HFCSMGPDFGVPPAGDHYC--CLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLS 576

Query: 530 GYAINGN---ATEAIKLFEEMVMEGVA 553
              +NG+   +  A K   E+  E VA
Sbjct: 577 ACQMNGDLERSQRAAKRVSELEPENVA 603



 Score = 42.4 bits (98), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 20/160 (12%)

Query: 470 ALQLGRQIHHLAI------KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
           A  +GR++H   I      +S + ++  + N LI ++ KCG    A  +F      +  S
Sbjct: 16  ACAIGRKLHEAKILHDEIARSPHGDNRRLTNLLIDLFGKCGDPDAARAVFNRVRLPNEYS 75

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMT 583
           W+ +I  Y  +    +A  LF+ M       D  T+  +++A + +  +D   +LF  M 
Sbjct: 76  WSCIIQAYVSSSRIHDARALFDSM----PGFDAFTWNIMIAAYARINRLDDARELFHGMI 131

Query: 584 ---EVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKI 620
              +V +   LV  YA       R  RL+EA  + + M +
Sbjct: 132 SGRDVVSWAILVAGYA-------RHDRLEEASALFRRMPL 164


>gi|297804490|ref|XP_002870129.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315965|gb|EFH46388.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 853

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/504 (37%), Positives = 303/504 (60%), Gaps = 18/504 (3%)

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ-RGQIEEAARLFI 288
           E  +     +++   R+G +  A  +F  M  +N V+WN+++    +   ++ EA +LF 
Sbjct: 58  EDQIFPLNKIIATRVRSGDIDGALSVFHGMRAKNTVSWNSLLVGISKDPSRMMEAHQLFD 117

Query: 289 EMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQI 348
           E+PE +  S+  M+  YVR    ++A+   ++MP+K+ A+   MI+GY +   M++A  +
Sbjct: 118 EIPEPDTFSYNIMLSCYVRNGNFEKAQSFFNRMPFKDAASWNTMITGYARRGEMEKARVL 177

Query: 349 FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAV 408
           F  +   + V WN MI GY +CG +++A + F+    + +V W  MI GY + ++++ A 
Sbjct: 178 FYSMMEKNEVSWNAMISGYIECGDLEKAAHFFKAAPFRGVVAWTAMITGYMKAKKVELAE 237

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
            +F++M  ++N V+WNA+ISG+++N    D LK+F  M +EG + + S L+ AL  C+ L
Sbjct: 238 AMFKDMTVKKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSEL 297

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
           +AL LGRQIH                  I MY KCG + +A  LF+     DV++WN++I
Sbjct: 298 SALCLGRQIHQ-----------------IVMYCKCGELGDAWKLFEAMKKKDVVAWNAMI 340

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI 588
           +GYA +GNA +A+ LF EM      PD +TF+ VL AC+H GLVD G+  F+ M   Y +
Sbjct: 341 SGYAQHGNAEKALCLFHEMRDSKTKPDWITFVAVLLACNHAGLVDIGMTYFDSMVRDYRV 400

Query: 589 EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVE 648
           EP  +HY CM+DLL RAG+++EA ++++ M  +P+A ++GTLLGACR+H+N++L   A E
Sbjct: 401 EPRPDHYTCMVDLLGRAGKVEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAE 460

Query: 649 KLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFL 708
           KL EL+P+  + Y  L+N++A    W++V +VR  M+ S   K PG SWIE++N+IH F 
Sbjct: 461 KLLELDPRNAAGYVQLANIYASKNLWEDVARVRKRMKESNVVKVPGYSWIEIRNKIHHFR 520

Query: 709 SGDPKQCRTAEICNTLKTLAAQIR 732
           S D        I   LK L  +++
Sbjct: 521 SSDRIHPELDSIHKKLKELERKMK 544



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 117/385 (30%), Positives = 195/385 (50%), Gaps = 65/385 (16%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKN-GRVNDARKLFEQMP 73
           +F  NK I    +SG ++ A+ +F  M  KNTV++NS++   +K+  R+ +A +LF+++P
Sbjct: 61  IFPLNKIIATRVRSGDIDGALSVFHGMRAKNTVSWNSLLVGISKDPSRMMEAHQLFDEIP 120

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDL 133
           + +  S+N M++ Y+ N   ++A+  F++M   D  SW  MIT Y R+GE+EKAR LF  
Sbjct: 121 EPDTFSYNIMLSCYVRNGNFEKAQSFFNRMPFKDAASWNTMITGYARRGEMEKARVLFYS 180

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
           +  K + + WNAM++GY + G+  +A     A P + +V+W +M++GY K  ++ LA   
Sbjct: 181 MMEKNEVS-WNAMISGYIECGDLEKAAHFFKAAPFRGVVAWTAMITGYMKAKKVELAEAM 239

Query: 194 FEAME-ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG---------- 242
           F+ M  ++++V+WN M+ GYVE    +   K F+ + E+ +    + LS           
Sbjct: 240 FKDMTVKKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSA 299

Query: 243 ------------YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
                       Y + G + +A +LF+ M  ++VVAWNAMI+ Y Q G  E+A  LF EM
Sbjct: 300 LCLGRQIHQIVMYCKCGELGDAWKLFEAMKKKDVVAWNAMISGYAQHGNAEKALCLFHEM 359

Query: 291 P----------------------------------------ERNPVSWTTMIDGYVRIAK 310
                                                    E  P  +T M+D   R  K
Sbjct: 360 RDSKTKPDWITFVAVLLACNHAGLVDIGMTYFDSMVRDYRVEPRPDHYTCMVDLLGRAGK 419

Query: 311 LDEARRLLDQMPYKNIAAQTAMISG 335
           ++EA +L+  MP++  AA    + G
Sbjct: 420 VEEALKLIRSMPFRPHAAVFGTLLG 444



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 109/353 (30%), Positives = 180/353 (50%), Gaps = 50/353 (14%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF 109
           N +I+   ++G ++ A  +F  M  +N VSWNS++ G +  D  +               
Sbjct: 65  NKIIATRVRSGDIDGALSVFHGMRAKNTVSWNSLLVG-ISKDPSR--------------- 108

Query: 110 SWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK 169
                         + +A +LFD +P + DT  +N M++ Y + GN+ +A+   + MP K
Sbjct: 109 --------------MMEAHQLFDEIP-EPDTFSYNIMLSCYVRNGNFEKAQSFFNRMPFK 153

Query: 170 NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP 229
           +  SWN+M++GY + GEM  A   F +M E++ VSWN M+ GY+E  DL+ A  FF+  P
Sbjct: 154 DAASWNTMITGYARRGEMEKARVLFYSMMEKNEVSWNAMISGYIECGDLEKAAHFFKAAP 213

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQIEEAARLFI 288
            + VV+W  M++GY +  ++  A  +F  M + +N+V WNAMI+ YV+  + E+  +LF 
Sbjct: 214 FRGVVAWTAMITGYMKAKKVELAEAMFKDMTVKKNLVTWNAMISGYVENSRPEDGLKLFR 273

Query: 289 EMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDE 344
            M E     N    ++ + G   ++ L   R             Q   I  Y +   + +
Sbjct: 274 AMLEEGIRPNSSGLSSALLGCSELSALCLGR-------------QIHQIVMYCKCGELGD 320

Query: 345 ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN-KDIVTWNTMIA 396
           A ++F+ +   DVV WN MI GYAQ G  ++A+ LF +M + K    W T +A
Sbjct: 321 AWKLFEAMKKKDVVAWNAMISGYAQHGNAEKALCLFHEMRDSKTKPDWITFVA 373



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 105/381 (27%), Positives = 178/381 (46%), Gaps = 49/381 (12%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            F+ N  ++   ++G  E+A   F++M  K+  ++N+MI+ YA+ G +  AR LF  M +
Sbjct: 124 TFSYNIMLSCYVRNGNFEKAQSFFNRMPFKDAASWNTMITGYARRGEMEKARVLFYSMME 183

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           +N VSWN+MI+GY+    +++A   F       + +W  MIT Y +  ++E A  +F  +
Sbjct: 184 KNEVSWNAMISGYIECGDLEKAAHFFKAAPFRGVVAWTAMITGYMKAKKVELAEAMFKDM 243

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG-------------- 180
             K++   WNAM++GY +     +  KL  AM  + I   +S LS               
Sbjct: 244 TVKKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALCLG 303

Query: 181 --------YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQN 232
                   Y K GE+  A K FEAM+++DVV+WN M+ GY +  + + A   F ++ +  
Sbjct: 304 RQIHQIVMYCKCGELGDAWKLFEAMKKKDVVAWNAMISGYAQHGNAEKALCLFHEMRDSK 363

Query: 233 V----VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA------WNAMIAAYVQRGQIEE 282
                +++V +L      G +      FD M +R+         +  M+    + G++EE
Sbjct: 364 TKPDWITFVAVLLACNHAGLVDIGMTYFDSM-VRDYRVEPRPDHYTCMVDLLGRAGKVEE 422

Query: 283 AARLFIEMPERNPVSWTTMIDGYVRIAKLDE-----ARRLLDQMPYKNIAAQTAMISGYV 337
           A +L   MP R   +    + G  R+ K  E     A +LL+  P +N A    + + Y 
Sbjct: 423 ALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLELDP-RNAAGYVQLANIYA 481

Query: 338 QN----------KRMDEANQI 348
                       KRM E+N +
Sbjct: 482 SKNLWEDVARVRKRMKESNVV 502


>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 2000

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 230/703 (32%), Positives = 377/703 (53%), Gaps = 23/703 (3%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQRNLVSWN----SMIAGYLHNDKVKEARELFDKMFRP 106
           S++      G + D   L   + +  + S       ++  YL+  K  EA ++       
Sbjct: 26  SLLKNLTNQGLIRDGSALHAHLFKTGISSEQYISIKLLIMYLNYRKSAEADQISKDFDGF 85

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           DL     MI+   ++G L++AR+LFD +P   + + W A+++G+ K G   E+    +  
Sbjct: 86  DLVVHNCMISANVQRGNLDEARKLFDEMPQTNEIS-WTALISGFMKYGRVRESMWYFERN 144

Query: 167 PSKNIVSWNSMLSGYTKNG----EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAW 222
           P +N+VSW + +SGY +NG     M L  K  E+  + + V++  ++     L D     
Sbjct: 145 PFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGM 204

Query: 223 KFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
                I     E ++    ++++   R G +  AR +FD+M  ++VV+W A++  YV+  
Sbjct: 205 SVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMD 264

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK----NIAAQTAMIS 334
           ++ EA R+F EMP+RN VSW+ MI  Y +    +E+ RL  +M  +    NI+  ++++S
Sbjct: 265 ELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSILS 324

Query: 335 GYVQNKRMDEANQI---FDKIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
                + +     I     KIG   DV   + +I  Y +CG   +   LF  ++ K++V+
Sbjct: 325 ALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVS 384

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
           WN M+ GY+    M++A  +F  M   RN VSW+A+I+G L  E   +  ++F  M   G
Sbjct: 385 WNAMVGGYSLNGHMEEAKYLFNIM-PVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLG 443

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
           +  + ST +  L ACA  A+L  G+ +H   +K G   D +VG +L  MYAK G I++++
Sbjct: 444 EIPNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSK 503

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEM-VMEGVAPDPVTFIGVLSACSHV 569
            +F      + +SW ++I G A +G A E++ LFEEM     +AP+ V F+ VL ACSH 
Sbjct: 504 KVFNRMPKKNEVSWTAMIQGLAESGLAEESLTLFEEMEKTSSIAPNEVMFLAVLFACSHS 563

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629
           GLVD GL  F  M  VY ++P   H+ C++D+LSRAGRL EA E +  M  +P    W  
Sbjct: 564 GLVDKGLWYFNSMEAVYGLKPKGRHFTCVVDMLSRAGRLFEAEEFIYSMPFQPETNAWAA 623

Query: 630 LLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689
           LL  C+ ++N +L      KL E+  +  + Y LLSN++A AGRW +V KVR  M+  G 
Sbjct: 624 LLSGCKTYKNEELAERVAGKLWEMAEKNCAGYVLLSNIYASAGRWRDVLKVRKLMKAKGL 683

Query: 690 QKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +K  GCSW+E+++++H+F S D    ++AEI   L+ L  +++
Sbjct: 684 KKSGGCSWVEIRDRVHSFYSEDGAHSQSAEIYEILELLGYEMK 726



 Score =  201 bits (512), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 144/564 (25%), Positives = 272/564 (48%), Gaps = 76/564 (13%)

Query: 33  EAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDK 92
           EA +I       + V +N MISA  + G +++ARKLF++MPQ N +SW ++I+G++   +
Sbjct: 74  EADQISKDFDGFDLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGR 133

Query: 93  VKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF------DLLPNKEDTACWNAM 146
           V+E+   F++    ++ SW   I+ Y + G   +A +LF      ++ PNK     + ++
Sbjct: 134 VRESMWYFERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNK---VTFTSV 190

Query: 147 VAGYAKIGNYNEAKKLLDAMP----SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV 202
           V   A +G++     +L  +       ++   NS+++   + GE+HLA + F+ MEE+DV
Sbjct: 191 VRACANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDV 250

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR 262
           VSW  +LD YVE+D+L  A + F ++P++N VSW  M++ Y ++G   E+ RLF +M   
Sbjct: 251 VSWTAILDLYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQE 310

Query: 263 ----NVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEA 314
               N+  ++++++A      ++    +   +     E++    +++ID Y +  +  + 
Sbjct: 311 GFKPNISCFSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDG 370

Query: 315 RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMD 374
           R L D +  KN+ +  AM+ GY  N  M+EA  +F+ +   + V W+ +I G+  C + D
Sbjct: 371 RFLFDTILEKNMVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFD 430

Query: 375 EAINLFRQMV------NK---------------------------------DIVTWNTMI 395
           E   +F +M+      NK                                 D      + 
Sbjct: 431 EMFEVFNEMILLGEIPNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALT 490

Query: 396 AGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADH 455
             YA+   ++ + K+F  M K +N VSW A+I G  ++    ++L +F  M +    A +
Sbjct: 491 DMYAKSGDIESSKKVFNRMPK-KNEVSWTAMIQGLAESGLAEESLTLFEEMEKTSSIAPN 549

Query: 456 STLACA-LSACAHLAALQLG-------RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
             +  A L AC+H   +  G         ++ L  K  +         ++ M ++ GR+ 
Sbjct: 550 EVMFLAVLFACSHSGLVDKGLWYFNSMEAVYGLKPKGRHF------TCVVDMLSRAGRLF 603

Query: 508 NA-ELLFKDADPVDVISWNSLIAG 530
            A E ++      +  +W +L++G
Sbjct: 604 EAEEFIYSMPFQPETNAWAALLSG 627



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 121/455 (26%), Positives = 215/455 (47%), Gaps = 91/455 (20%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL 88
           G ++EA K+F +M Q N +++ ++IS + K GRV ++   FE+ P +N+VSW + I+GY+
Sbjct: 101 GNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRESMWYFERNPFQNVVSWTAAISGYV 160

Query: 89  HNDKVKEARELFDKM---------------------------------------FRPDLF 109
            N    EA +LF K+                                       +  DL 
Sbjct: 161 QNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGMSVLGLIVKTGYEHDLA 220

Query: 110 SWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK 169
               +IT   R GE+  ARE+FD +  K D   W A++  Y ++    EA+++ D MP +
Sbjct: 221 VSNSLITLCLRMGEIHLAREVFDRMEEK-DVVSWTAILDLYVEMDELGEARRIFDEMPQR 279

Query: 170 NIVSWNSMLSGYTKNGEMHLASKFF-------------------------EAME------ 198
           N VSW++M++ Y ++G    + + F                         EA++      
Sbjct: 280 NEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSILSALASVEALQAGMNIH 339

Query: 199 --------ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRML 250
                   E+DV   + ++D Y +  +       F  I E+N+VSW  M+ GY+ NG M 
Sbjct: 340 GHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSWNAMVGGYSLNGHME 399

Query: 251 EARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PERNPVSWTTMIDG 304
           EA+ LF+ MP+RN V+W+A+IA ++   Q +E   +F EM      P  N  ++++++  
Sbjct: 400 EAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIP--NKSTFSSLLCA 457

Query: 305 YVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIGTHDVVCW 360
               A LD+ + L  ++    I       TA+   Y ++  ++ + ++F+++   + V W
Sbjct: 458 CASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKVFNRMPKKNEVSW 517

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMI 395
             MI+G A+ G  +E++ LF +M     +  N ++
Sbjct: 518 TAMIQGLAESGLAEESLTLFEEMEKTSSIAPNEVM 552



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 166/320 (51%), Gaps = 19/320 (5%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  IT   + G +  A ++F +M +K+ V++ +++  Y +   + +AR++F++MPQRN V
Sbjct: 223 NSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMDELGEARRIFDEMPQRNEV 282

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLL 134
           SW++MIA Y  +   +E+  LF +M    F+P++  ++ +++       L+    +   +
Sbjct: 283 SWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSILSALASVEALQAGMNIHGHV 342

Query: 135 PN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
                ++D    ++++  Y K G   + + L D +  KN+VSWN+M+ GY+ NG M  A 
Sbjct: 343 TKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSWNAMVGGYSLNGHMEEAK 402

Query: 192 KFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ------KIPEQNVVSWVTMLSGYAR 245
             F  M  R+ VSW+ ++ G+++ +  D  ++ F       +IP ++  S  ++L   A 
Sbjct: 403 YLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFS--SLLCACAS 460

Query: 246 NGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTM 301
              + + + L  ++    +        A+   Y + G IE + ++F  MP++N VSWT M
Sbjct: 461 TASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKVFNRMPKKNEVSWTAM 520

Query: 302 IDGYVRIAKLDEARRLLDQM 321
           I G       +E+  L ++M
Sbjct: 521 IQGLAESGLAEESLTLFEEM 540



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 150/317 (47%), Gaps = 31/317 (9%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  +  I    K G  ++   +F  + +KN V++N+M+  Y+ NG + +A+ LF  MP 
Sbjct: 351 VFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSWNAMVGGYSLNGHMEEAKYLFNIMPV 410

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAREL 130
           RN VSW+++IAG+L  ++  E  E+F++M      P+  +++ ++        L+K + L
Sbjct: 411 RNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSSLLCACASTASLDKGKNL 470

Query: 131 FDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
              +     + DT    A+   YAK G+   +KK+ + MP KN VSW +M+ G  ++G  
Sbjct: 471 HGKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKVFNRMPKKNEVSWTAMIQGLAESGLA 530

Query: 188 HLASKFFEAMEERDVVSWNLML----------DGYVE-----LDDLDSAWKFFQKIPEQN 232
             +   FE ME+   ++ N ++           G V+      + +++ +    K   ++
Sbjct: 531 EESLTLFEEMEKTSSIAPNEVMFLAVLFACSHSGLVDKGLWYFNSMEAVYGL--KPKGRH 588

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAA---YVQRGQIEEAARLFI 288
               V MLS   R GR+ EA      MP +    AW A+++    Y      E  A    
Sbjct: 589 FTCVVDMLS---RAGRLFEAEEFIYSMPFQPETNAWAALLSGCKTYKNEELAERVAGKLW 645

Query: 289 EMPERNPVSWTTMIDGY 305
           EM E+N   +  + + Y
Sbjct: 646 EMAEKNCAGYVLLSNIY 662


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 230/667 (34%), Positives = 359/667 (53%), Gaps = 74/667 (11%)

Query: 137 KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEA 196
           K +T   N ++  Y K  N   A+KL D +P  +IV+  ++LS Y+ +G + LA + F A
Sbjct: 37  KPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSSSGNVKLAQQLFNA 96

Query: 197 --MEERDVVSWNLMLDGYVELDDLDSAWKFFQK------IPE----QNVVSWVTMLSGYA 244
             +  RD VS+N M+  Y   +D  +A   F +      +P+     +V+S +++++   
Sbjct: 97  TPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVLSALSLIADEE 156

Query: 245 RNGRMLEARRL-FDQMPIRNVVAWNAMIAAYV--------QRGQIEEAARLFIEMPERNP 295
           R+ +ML    +    + I +V   NA+++ YV        +  Q+  +AR   +   +N 
Sbjct: 157 RHCQMLHCEVIKLGTLLIPSVT--NALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQ 214

Query: 296 V---SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF--- 349
           +   SWTTMI GYVR   L  AR LLD + Y    A  AMISGYV+    +EA   F   
Sbjct: 215 IYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRM 274

Query: 350 -----------------------DKIG-------------------THDVVCW--NVMIK 365
                                  +K+G                   +H  V    N +I 
Sbjct: 275 HSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALIT 334

Query: 366 GYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
            Y +  RM EA  +F +M  +DI++WN +++GY   +++++A  IF EM   RN ++W  
Sbjct: 335 FYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEM-PERNVLTWTV 393

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485
           +ISG  QN F  + LK+F  M  EG +      A A++AC+ L +L  G+QIH   I+ G
Sbjct: 394 MISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLG 453

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
           + + L  GN+LITMY++CG +++AE +F     VD +SWN++IA  A +G+  +AI+LFE
Sbjct: 454 HDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFE 513

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRA 605
           +M+ E + PD +TF+ +L+AC+H GL+  G   F+ M   Y I P  +HYA +IDLL RA
Sbjct: 514 QMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRA 573

Query: 606 GRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLS 665
           G   +A  ++K M  +  A IW  LL  CR+H N++LG  A ++L EL P +   Y +LS
Sbjct: 574 GMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILS 633

Query: 666 NMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLK 725
           NM+A  G+WDEV +VR+ M   G +K+PGCSW+EV+N +H FL  D +      +   L+
Sbjct: 634 NMYAALGQWDEVARVRLLMRERGVKKEPGCSWVEVENMVHVFLVDDARHPEVQAVYTYLQ 693

Query: 726 TLAAQIR 732
            L  +++
Sbjct: 694 QLVNEMK 700



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 156/615 (25%), Positives = 269/615 (43%), Gaps = 118/615 (19%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ- 74
           F  N+ I    KS  +  A K+F ++ + + V   +++SAY+ +G V  A++LF   P  
Sbjct: 41  FILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSSSGNVKLAQQLFNATPLT 100

Query: 75  -RNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWA----------------- 112
            R+ VS+N+MI  Y H +    A  LF +M    F PD F+++                 
Sbjct: 101 IRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVLSALSLIADEERHCQ 160

Query: 113 -------------------LMITCY--------TRKGEL-EKARELFDLLP-NKEDTACW 143
                               +++CY         +  +L   AR++FD  P N+     W
Sbjct: 161 MLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYEPSW 220

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----E 199
             M+AGY +  +   A++LLD +     V+WN+M+SGY + G    A   F  M     +
Sbjct: 221 TTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQ 280

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKI----------PEQNVVSWV--TMLSGYARNG 247
            D  ++  ++      ++    +   +++          P  + V  V   +++ Y +  
Sbjct: 281 EDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYD 340

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVR 307
           RM+EARR+FD+MP+R++++WNA+++ YV   +IEEA  +F EMPERN ++WT MI G  +
Sbjct: 341 RMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQ 400

Query: 308 IAKLDEARRLLDQMPYKNIAAQTAMISGYVQN----KRMDEANQIFDKIGT--HD--VVC 359
               +E  +L +QM  + +       +G +        +D   QI  ++    HD  +  
Sbjct: 401 NGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSA 460

Query: 360 WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRN 419
            N +I  Y++CG ++ A ++F  M   D V+WN MIA  AQ      A+++FE+M K   
Sbjct: 461 GNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMK--- 517

Query: 420 TVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ-IH 478
                                        E    D  T    L+AC H   ++ GR    
Sbjct: 518 -----------------------------EDILPDRITFLTILTACNHAGLIKEGRHYFD 548

Query: 479 HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE-----LLFKDADPVDVISWNSLIAGYAI 533
            +  + G          LI +  + G    A+     + F+   P+    W +L+AG  I
Sbjct: 549 TMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPI----WEALLAGCRI 604

Query: 534 NGNATEAIKLFEEMV 548
           +GN    I+  + ++
Sbjct: 605 HGNMELGIQAADRLL 619



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 152/319 (47%), Gaps = 20/319 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  IT   K  R+ EA ++F +M  ++ +++N+++S Y    R+ +A  +F +MP+RN++
Sbjct: 330 NALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVL 389

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFD-- 132
           +W  MI+G   N   +E  +LF++M      P  +++A  IT  +  G L+  +++    
Sbjct: 390 TWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQV 449

Query: 133 -LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
             L +    +  NA++  Y++ G    A+ +   MP  + VSWN+M++   ++G    A 
Sbjct: 450 IRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAI 509

Query: 192 KFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSG 242
           + FE M + D+    +++  +L        +     +F  +  +  ++     +  ++  
Sbjct: 510 ELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDL 569

Query: 243 YARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE---EAARLFIEMPERNPVSW 298
             R G  L+A+ +   MP       W A++A     G +E   +AA   +E+      ++
Sbjct: 570 LCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELIPGQDGTY 629

Query: 299 TTMIDGYVRIAKLDEARRL 317
             + + Y  + + DE  R+
Sbjct: 630 IILSNMYAALGQWDEVARV 648



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 174/408 (42%), Gaps = 53/408 (12%)

Query: 30  RVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLH 89
           R+EEA  IFS+M ++N +T+  MIS  A+NG   +  KLF QM    L   +   AG + 
Sbjct: 372 RIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAIT 431

Query: 90  NDKV----KEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTA 141
              V       +++  ++ R      L +   +IT Y+R G +E A  +F  +P   D+ 
Sbjct: 432 ACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMP-YVDSV 490

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASKFFEAM 197
            WNAM+A  A+ G+  +A +L + M  ++I    +++ ++L+     G +     +F+ M
Sbjct: 491 SWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTM 550

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQK-------IP-EQNVVSWVTMLSGYARNGRM 249
             R  ++     D Y  L DL      F K       +P E     W  +L+G   +G M
Sbjct: 551 CTRYGITPG--EDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNM 608

Query: 250 ----LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN-----PVSWTT 300
                 A RL + +P ++   +  +   Y   GQ +E AR+ + M ER        SW  
Sbjct: 609 ELGIQAADRLLELIPGQD-GTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGCSWVE 667

Query: 301 MIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMIS--GYVQNKRMD----EANQIFDKIGT 354
            ++  V +  +D+AR    Q  Y  +      +   GYV + +      E+      + T
Sbjct: 668 -VENMVHVFLVDDARHPEVQAVYTYLQQLVNEMKKLGYVPDTKFVLHDMESEHKEHSLST 726

Query: 355 HD---VVCWNVM----------IKGYAQCGRMDEAINLFRQMVNKDIV 389
           H     V + +M           K    CG    A     ++V ++IV
Sbjct: 727 HSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYISKVVEREIV 774



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 34/154 (22%)

Query: 462 LSACAHLAALQL-GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVD 520
           L+   H++  Q+  R +H   + SG+  + F+ N LI +Y K   I  A  LF      D
Sbjct: 11  LTQLNHVSTTQIIARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPD 70

Query: 521 VISWNSLIAGYAINGNAT---------------------------------EAIKLFEEM 547
           +++  +L++ Y+ +GN                                    A+ LF +M
Sbjct: 71  IVARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQM 130

Query: 548 VMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC 581
              G  PDP TF  VLSA S +   +   ++  C
Sbjct: 131 KRYGFLPDPFTFSSVLSALSLIADEERHCQMLHC 164


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 222/625 (35%), Positives = 350/625 (56%), Gaps = 34/625 (5%)

Query: 135  PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
            P   +T   N +V+ YA++G   +A+++ D +P  N  S+N++LS + + G    A   F
Sbjct: 790  PFVAETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALF 849

Query: 195  EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV----SWVTMLSGYA-----R 245
             A+ + D  S+N ++    +      A  F   +   + V    S+ + LS  A     R
Sbjct: 850  HAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSR 909

Query: 246  NGRMLEARRLFDQMP-IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDG 304
             G  + A  L  + P  ++V   +A++  Y +    EEA R+F  MPERN VSW ++I  
Sbjct: 910  TGVQVHA--LVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITC 967

Query: 305  YVRIAKLDEARRLLDQM------PYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGT--- 354
            Y +   + EA  L   M      P +  +A+  +  +G   ++   E  Q+  ++     
Sbjct: 968  YEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADR---EGRQVHARVVKSDR 1024

Query: 355  --HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFE 412
               D+V  N ++  YA+CGR   A  +F +M ++ +V+  ++I GYA+   ++DA  +F 
Sbjct: 1025 FREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFS 1084

Query: 413  EMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQ 472
            +M ++ N ++WN LI+ + QN    +AL++FV + +E     H T    L+AC ++A LQ
Sbjct: 1085 QMVEK-NVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQ 1143

Query: 473  LGRQIHHLAIKSGYV------NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNS 526
            LG+Q H   +K G+       +D+FVGNSL+ MY K G I +   +F+     D +SWN+
Sbjct: 1144 LGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNA 1203

Query: 527  LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVY 586
            +I G+A NG A +A+ LFE M+    +PD VT IGVLSAC H GLV+ G + F  MTE +
Sbjct: 1204 MIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDH 1263

Query: 587  AIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIA 646
             I P  +HY CMIDLL RAG L E  E++K M ++P+A +W +LLG+CR+H+N+++G  A
Sbjct: 1264 GIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLLGSCRLHKNVEMGEWA 1323

Query: 647  VEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHT 706
              KL EL+P+ +  Y LLSNM+AE G+W +V +VR SM+  G  KQPGCSWIE+  ++  
Sbjct: 1324 AGKLFELDPRNSGPYVLLSNMYAELGKWADVFRVRSSMKHRGVSKQPGCSWIEIGRKVSV 1383

Query: 707  FLSGDPKQCRTAEICNTLKTLAAQI 731
            FL+ D       EI   L+ +  Q+
Sbjct: 1384 FLARDNGHPCKNEIHAILRIIQMQM 1408



 Score =  229 bits (583), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 187/697 (26%), Positives = 308/697 (44%), Gaps = 108/697 (15%)

Query: 46  TVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM-- 103
           T  +N  I + A  G V DAR+LF+ MP R+  SWN++I          EA  LF  M  
Sbjct: 85  TFLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNS 144

Query: 104 --FRPDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNE 158
              RP   + A +++C     +L  AR+L   +  ++   +     A+V  Y       +
Sbjct: 145 LGIRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLAD 204

Query: 159 AKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF------------------------ 194
           A++  D +   N +SWN ++  Y   G   +A   F                        
Sbjct: 205 ARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRD 264

Query: 195 -EAMEE-RDVVSWNL-------------MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTM 239
             A+EE R + ++ L             ++D Y +   +D+A   F   P +++V   ++
Sbjct: 265 NNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSI 324

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWT 299
           +SG A  GR+ +A+R+F+ M  RN+V+WNAM+  Y++   +  A  LF +M +      T
Sbjct: 325 VSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQE-----T 379

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
              D     + L     +LD    + + A  A+  G+  +                  + 
Sbjct: 380 REFDAITLGSVLSACTGILDIGKGEEVHA-FAIKCGFFSSP-----------------IL 421

Query: 360 WNVMIKGYAQCG--RMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
            N +++ Y++CG  R  E + LF     +D  +WN++I+GY                   
Sbjct: 422 KNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGY------------------E 463

Query: 418 RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI 477
           R+++S  AL +               +   Q     + ST + AL+ACA++  L+ G QI
Sbjct: 464 RHSMSEAALYA---------------LTKMQSEVTPNQSTFSSALAACANIFLLKQGMQI 508

Query: 478 HHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNA 537
           H   I+ GY  D  + + LI MY KC +   +  +F+     DVI WNS+I G A +G  
Sbjct: 509 HAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKG 568

Query: 538 TEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYAC 597
              + LF+EM  +G+  D VTF+G L +C   G V  G   F  M +  +I P +EHY C
Sbjct: 569 EYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYFTLMMD-ESIIPRIEHYEC 627

Query: 598 MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK 657
           MI+LL + G + E  + V+ M  +P   +W  +   CR + N KLG  A + +++  P  
Sbjct: 628 MIELLGKHGCMVELEDFVEHMPFEPTTAMWLRIFDCCREYGNRKLGERAAKCINDSNPLT 687

Query: 658 TSCYALLSNMHA-EAGRWDEVEKVRVSMEGSGAQKQP 693
              +    +  + + GR  E E    S EG G ++ P
Sbjct: 688 PVQFVATVDYESNDGGR--EAESTSFSSEGEGCEELP 722



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 121/465 (26%), Positives = 229/465 (49%), Gaps = 65/465 (13%)

Query: 15   VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
             F  N  ++   + GR+ +A ++F ++   NT +YN+++SA+A+ GR  DAR LF  +P 
Sbjct: 795  TFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIPD 854

Query: 75   RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL----FSWALMITCYTRKGELEKAREL 130
             +  S+N++IA    + +  +A      M   D     +S+A  ++    + +     ++
Sbjct: 855  PDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQV 914

Query: 131  FDLL---PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
              L+   P+ +D    +A++  YAK     EA+++ +AMP +NIVSWNS+++ Y +NG +
Sbjct: 915  HALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQNGPV 974

Query: 188  HLASKFFEAM--------------------------EER--------------DVVSWNL 207
              A   F +M                          E R              D+V  N 
Sbjct: 975  GEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSNA 1034

Query: 208  MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
            ++D Y +     +A   F ++  ++VVS  ++++GYAR+  + +A+ +F QM  +NV+AW
Sbjct: 1035 LVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNVIAW 1094

Query: 268  NAMIAAYVQRGQIEEAARLFIEMPERN--PVSWT--TMIDGYVRIAKLDEARRL------ 317
            N +IAAY Q G+ EEA RLF+ +   +  P  +T   +++    +A L   ++       
Sbjct: 1095 NVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVHVLK 1154

Query: 318  ----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRM 373
                 D  P  ++    +++  Y++   +D+  ++F+++   D V WN MI G+AQ GR 
Sbjct: 1155 EGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGHAQNGRA 1214

Query: 374  DEAINLFRQMV----NKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
             +A++LF +M+    + D VT   +++       +++  + F  M
Sbjct: 1215 KDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSM 1259



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 138/542 (25%), Positives = 236/542 (43%), Gaps = 103/542 (19%)

Query: 104  FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
            F  + F    +++ Y R G L  AR +FD +P+  +T  +NA+++ +A++G   +A+ L 
Sbjct: 791  FVAETFLLNTLVSAYARLGRLPDARRVFDEIPHP-NTFSYNALLSAHARLGRPADARALF 849

Query: 164  DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV----SWNLMLDGYVELDDLD 219
             A+P  +  S+N++++   ++     A  F  AM   D V    S+   L       D  
Sbjct: 850  HAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSR 909

Query: 220  SAWK---FFQKIPE-QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
            +  +      K P  ++V     +L  YA+     EARR+F+ MP RN+V+WN++I  Y 
Sbjct: 910  TGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYE 969

Query: 276  QRGQIEEAARLFIEM------PE----------------------------------RNP 295
            Q G + EA  LF+ M      P+                                   + 
Sbjct: 970  QNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDM 1029

Query: 296  VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
            V    ++D Y +  +   AR + D+M  +++ ++T++I+GY ++  +++A  +F ++   
Sbjct: 1030 VLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEK 1089

Query: 356  DVVCWNVMIKGYAQCGRMDEAINLF----RQMV--------------------------- 384
            +V+ WNV+I  YAQ G  +EA+ LF    R+ V                           
Sbjct: 1090 NVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAH 1149

Query: 385  --------------NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
                            D+   N+++  Y +   +DD  K+FE M  R N VSWNA+I G 
Sbjct: 1150 VHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDN-VSWNAMIVGH 1208

Query: 431  LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ-IHHLAIKSGYVND 489
             QN    DAL +F  M    +  D  T+   LSAC H   ++ GR+    +    G +  
Sbjct: 1209 AQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGIIPS 1268

Query: 490  LFVGNSLITMYAKCGRIQNAELLFKD--ADPVDVISWNSLIAGYAINGNAT----EAIKL 543
                  +I +  + G ++  E L K+   +P D + W SL+    ++ N       A KL
Sbjct: 1269 QDHYTCMIDLLGRAGHLKEVEELIKEMSMEP-DAVLWASLLGSCRLHKNVEMGEWAAGKL 1327

Query: 544  FE 545
            FE
Sbjct: 1328 FE 1329



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 126/502 (25%), Positives = 223/502 (44%), Gaps = 76/502 (15%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMS----QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           N  IT   ++G   EA+ +FS M+    +    T  S++S  A+   +  AR+L   + +
Sbjct: 120 NAIITASSRAGHPSEALSLFSNMNSLGIRPKDATMASVLSCCAECLDLCGARQLHGHIAK 179

Query: 75  R----NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
           R    N++   +++  Y +   + +AR  FD +  P+  SW +++  Y   G  + A ++
Sbjct: 180 RDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDM 239

Query: 131 F-----------------DLLPNKEDTA-----CWNAMVAG----------------YAK 152
           F                  +L  +++ A     C +A V                  YAK
Sbjct: 240 FFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAK 299

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY 212
            G  + A+ L +  P K++V   S++SG    G +  A + FE M+ER++VSWN ML GY
Sbjct: 300 CGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGY 359

Query: 213 VELDDLDSAWKFFQKIPEQ-------NVVSWVTMLSGYARNGRMLEARRL-----FDQMP 260
           +   DL  A   FQ++ ++        + S ++  +G    G+  E         F   P
Sbjct: 360 IRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSP 419

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFI-EM-PERNPVSWTTMIDGYVRIAKLDEARRLL 318
           I      NA++  Y + G +  A RL + EM  ER+  SW ++I GY R +  + A   L
Sbjct: 420 ILK----NALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALYAL 475

Query: 319 DQMPYKNIAAQTAMISG-------YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
            +M  +    Q+   S        ++  + M     +  K    D +  +V+I  Y +C 
Sbjct: 476 TKMQSEVTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCR 535

Query: 372 RMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSW-NALI 427
           + D +I +F    ++D++ WN+MI G A   + +  + +F+EM   G + ++V++  AL+
Sbjct: 536 QFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALV 595

Query: 428 SGFLQNEFHLDALKIFVLMTQE 449
           S   +    L     F LM  E
Sbjct: 596 SCISEGHVRL-GRSYFTLMMDE 616



 Score =  119 bits (297), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 161/340 (47%), Gaps = 30/340 (8%)

Query: 18   QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
             N  +    K GR   A  +F +M+ ++ V+  S+I+ YA++  V DA+ +F QM ++N+
Sbjct: 1032 SNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNV 1091

Query: 78   VSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAREL--- 130
            ++WN +IA Y  N + +EA  LF ++ R    P  +++  ++       +L+  ++    
Sbjct: 1092 IAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVH 1151

Query: 131  -------FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK 183
                   FD  P + D    N++V  Y K G+ ++  K+ + M +++ VSWN+M+ G+ +
Sbjct: 1152 VLKEGFRFDFGP-ESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGHAQ 1210

Query: 184  NGEMHLASKFFEAM----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV----- 234
            NG    A   FE M    E  D V+   +L        ++   ++F+ + E + +     
Sbjct: 1211 NGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGIIPSQD 1270

Query: 235  SWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE----EAARLFIE 289
             +  M+    R G + E   L  +M +  + V W +++ +      +E     A +LF E
Sbjct: 1271 HYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLLGSCRLHKNVEMGEWAAGKLF-E 1329

Query: 290  MPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
            +  RN   +  + + Y  + K  +  R+   M ++ ++ Q
Sbjct: 1330 LDPRNSGPYVLLSNMYAELGKWADVFRVRSSMKHRGVSKQ 1369



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 144/307 (46%), Gaps = 24/307 (7%)

Query: 27   KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
            + GR   A  + S   +++ V  N+++  YAK GR   AR +F++M  R++VS  S+I G
Sbjct: 1010 REGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITG 1069

Query: 87   YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKED------- 139
            Y  +  V++A+ +F +M   ++ +W ++I  Y + GE E+A  LF  L  +         
Sbjct: 1070 YARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTY 1129

Query: 140  ----TACWNAMVAGYAKIGNYNEAKK--LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
                 AC N       +  + +  K+    D  P  ++   NS++  Y K G +   +K 
Sbjct: 1130 GNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKV 1189

Query: 194  FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSGYARNGRM 249
            FE M  RD VSWN M+ G+ +      A   F+++       + V+ + +LS    +G +
Sbjct: 1190 FERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLV 1249

Query: 250  LEARRLFDQMP-----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMID 303
             E RR F  M      I +   +  MI    + G ++E   L  EM  E + V W +++ 
Sbjct: 1250 EEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLL- 1308

Query: 304  GYVRIAK 310
            G  R+ K
Sbjct: 1309 GSCRLHK 1315



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/370 (22%), Positives = 159/370 (42%), Gaps = 55/370 (14%)

Query: 14  YVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP 73
           +V  ++  +    K G ++ A  +F+    K+ V   S++S  A  GR+ DA+++FE M 
Sbjct: 286 HVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMK 345

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKARE 129
           +RNLVSWN+M+ GY+ +  +  A  LF +M +     D  +   +++  T   ++ K  E
Sbjct: 346 ERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEE 405

Query: 130 LFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLL--DAMPSKNIVSWNSMLSGYTKN 184
           +                NA+V  Y+K G    A++LL  +    ++  SWNS++SGY ++
Sbjct: 406 VHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERH 465

Query: 185 GEMHLA---------------SKFFEAME-----------------------ERDVVSWN 206
                A               S F  A+                        E D +  +
Sbjct: 466 SMSEAALYALTKMQSEVTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDILRS 525

Query: 207 LMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV-- 264
           +++D Y +    D + + F+  P ++V+ W +M+ G A +G+      LFD+M  + +  
Sbjct: 526 VLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKA 585

Query: 265 --VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS----WTTMIDGYVRIAKLDEARRLL 318
             V +   + + +  G +      F  M + + +     +  MI+   +   + E    +
Sbjct: 586 DSVTFLGALVSCISEGHVRLGRSYFTLMMDESIIPRIEHYECMIELLGKHGCMVELEDFV 645

Query: 319 DQMPYKNIAA 328
           + MP++   A
Sbjct: 646 EHMPFEPTTA 655



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 9/145 (6%)

Query: 13   SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
            S VF  N  +    K+G +++  K+F +M+ ++ V++N+MI  +A+NGR  DA  LFE+M
Sbjct: 1165 SDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFERM 1224

Query: 73   ----PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGE 123
                   + V+   +++   H+  V+E R  F  M       P    +  MI    R G 
Sbjct: 1225 LCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGH 1284

Query: 124  LEKARELFDLLPNKEDTACWNAMVA 148
            L++  EL   +  + D   W +++ 
Sbjct: 1285 LKEVEELIKEMSMEPDAVLWASLLG 1309



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 6/75 (8%)

Query: 482 IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
           +KS +V + F+ N+L++ YA+ GR+ +A  +F +    +  S+N+L++ +A  G   +A 
Sbjct: 787 LKSPFVAETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADAR 846

Query: 542 KLFEEMVMEGVAPDP 556
            LF  +      PDP
Sbjct: 847 ALFHAI------PDP 855


>gi|218197545|gb|EEC79972.1| hypothetical protein OsI_21597 [Oryza sativa Indica Group]
          Length = 731

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/694 (30%), Positives = 368/694 (53%), Gaps = 46/694 (6%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIA----GYLHNDKVKEARELFDKMFR 105
           N +++ + + GR+  AR++F+ MP+R++VSWN+++A       H   V    E+  + FR
Sbjct: 39  NRLMAEHLRAGRLEAAREVFDGMPRRDVVSWNTIMAVQARAGSHGRAVGAFLEMRRQGFR 98

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKE--DTACWNAMVAGYAKIGNYNEAKKLL 163
           PD  S++  ++   R   LE    L  +L   E  + A WNA+++G        +A+K  
Sbjct: 99  PDHTSFSTALSACARLEALEMGSCLEQVLDGVESPNVALWNALISGLVMNHRVGDARKAF 158

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWK 223
           D MP +N+VSW +M+ G+    E+ +A + F+ M  ++ VSW +M+ G+V  +    A +
Sbjct: 159 DRMPVRNVVSWTAMIKGHFTVHEVDMAFQLFKLMPVKNSVSWCVMIGGFVTHEKFSEAVE 218

Query: 224 FFQKI----PEQNVVSWVTMLSGYA-----RNGRML------------------------ 250
            F  +     E   V  V +++ +A     R GR +                        
Sbjct: 219 LFNSLMMNGEEVTNVILVKIVNAFAGMKSIRGGRCIHGLAVKSGFAYDLVLEASLVLMYC 278

Query: 251 ------EARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDG 304
                 EAR  FD+M   +V +WNAM+  Y+   +I+EA +LF  M  R+ +SW +MI+G
Sbjct: 279 KSLDITEARLEFDKMEGNHVGSWNAMLCGYIYSDKIDEARKLFDSMNNRDKISWNSMING 338

Query: 305 YVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMI 364
           Y+   ++ +A  L  +M  K++ A TA++S ++ N  +D+A  +F  +   DV+    ++
Sbjct: 339 YINDGRIADATELYSKMTEKSLEAATALMSWFIDNGMLDKARDMFYNMPQIDVMSCTTLL 398

Query: 365 KGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
            GY + G MD+A++LF  M  + +VT+N MI+G     ++ +A K+F E    R++V+W+
Sbjct: 399 FGYVKGGHMDDALDLFHMMQKRTVVTYNVMISGLFHQGKITEAYKLFNE-SPTRDSVTWS 457

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
            L++G   N    +AL+ +  M     +   S ++  +S  ++ + +  G+Q H   IK 
Sbjct: 458 CLVAGLATNGLIHEALQFYKKMLLSNIRPSESVVSSLISCLSNYSMMVHGQQFHATTIKI 517

Query: 485 GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLF 544
           G  + L + NSLI++Y KCG +  A+ +F      D ++WN++I GYA+N     A+++F
Sbjct: 518 GLDSHLLIQNSLISLYCKCGEMIIAQSIFDLMAKRDKVTWNTIIHGYALNNLGQNAVEMF 577

Query: 545 EEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSR 604
           E M    V PD +TF+GVLSAC+H+ L++     F  MT  Y I P + HYACM+DL  R
Sbjct: 578 ESMTKAQVDPDDITFLGVLSACNHMSLLEEAKYFFNAMTCTYGILPNIMHYACMVDLFCR 637

Query: 605 AGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALL 664
              + EA  +VK M  +P++ IW +LL  CR+  N KL   A  +L  ++P     Y  L
Sbjct: 638 KCMIKEAEGLVKSMPFEPDSAIWTSLLSGCRLTGNDKLAEHAASQLIAIDPCTKMPYLHL 697

Query: 665 SNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWI 698
            ++H    +   ++ +R  ++ +  +K  G SWI
Sbjct: 698 ISVHGLTNKSTVIDSLRSQIKSTATEKDVGYSWI 731



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/398 (23%), Positives = 193/398 (48%), Gaps = 19/398 (4%)

Query: 11  KGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFE 70
           +G++V + N  +     S +++EA K+F  M+ ++ +++NSMI+ Y  +GR+ DA +L+ 
Sbjct: 294 EGNHVGSWNAMLCGYIYSDKIDEARKLFDSMNNRDKISWNSMINGYINDGRIADATELYS 353

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
           +M +++L +  ++++ ++ N  + +AR++F  M + D+ S   ++  Y + G ++ A +L
Sbjct: 354 KMTEKSLEAATALMSWFIDNGMLDKARDMFYNMPQIDVMSCTTLLFGYVKGGHMDDALDL 413

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           F ++  K     +N M++G    G   EA KL +  P+++ V+W+ +++G   NG +H A
Sbjct: 414 FHMM-QKRTVVTYNVMISGLFHQGKITEAYKLFNESPTRDSVTWSCLVAGLATNGLIHEA 472

Query: 191 SKFFEAM-------EERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSWVTMLSG 242
            +F++ M        E  V S    L  Y  +           KI  + +++   +++S 
Sbjct: 473 LQFYKKMLLSNIRPSESVVSSLISCLSNYSMMVHGQQFHATTIKIGLDSHLLIQNSLISL 532

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSW 298
           Y + G M+ A+ +FD M  R+ V WN +I  Y      + A  +F  M     + + +++
Sbjct: 533 YCKCGEMIIAQSIFDLMAKRDKVTWNTIIHGYALNNLGQNAVEMFESMTKAQVDPDDITF 592

Query: 299 TTMIDGYVRIAKLDEARRLLDQMP-----YKNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
             ++     ++ L+EA+   + M        NI     M+  + +   + EA  +   + 
Sbjct: 593 LGVLSACNHMSLLEEAKYFFNAMTCTYGILPNIMHYACMVDLFCRKCMIKEAEGLVKSMP 652

Query: 354 TH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
              D   W  ++ G    G    A +   Q++  D  T
Sbjct: 653 FEPDSAIWTSLLSGCRLTGNDKLAEHAASQLIAIDPCT 690


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  384 bits (986), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 236/786 (30%), Positives = 386/786 (49%), Gaps = 115/786 (14%)

Query: 32  EEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHND 91
           +E I+I++ + QK    YN  +        V +   + E +  R       ++  Y    
Sbjct: 86  DECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSR-------LLEVYCQTG 138

Query: 92  KVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVA 148
            V++AR +FDKM   ++FSW  ++  Y   G+ E+  +LF L+ N   + D   +  +  
Sbjct: 139 CVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFK 198

Query: 149 GYAKIGNYNEAKKLLDAMPS----KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS 204
             +++ NY   K + D M S     N     S+L  + K G M +A +FFE +E +DV  
Sbjct: 199 ACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFM 258

Query: 205 WNLMLDGYVELDDLDSAWKFFQKI------PEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
           WN+M+ GY    +   A K    +      P+Q  V+W  ++SGYA++G+  EA + F +
Sbjct: 259 WNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQ--VTWNAIISGYAQSGQFEEASKYFLE 316

Query: 259 M-------PIRNVVAWNAMIAAYVQRGQIEEAARLF------------------------ 287
           M       P  NVV+W A+IA   Q G   EA  +F                        
Sbjct: 317 MGGLKDFKP--NVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTN 374

Query: 288 ----------------IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
                           +E  + + +   +++D Y +   ++ ARR    +   ++ +  A
Sbjct: 375 LSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNA 434

Query: 332 MISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQM---- 383
           M++GY      +EA ++  ++       D++ WN ++ G+ Q G    A+  F++M    
Sbjct: 435 MLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMG 494

Query: 384 VNKDIVTWNTMIAGYAQIR-----------------------------------QMDDAV 408
           ++ +  T +  +A   Q+R                                    ++ A 
Sbjct: 495 MDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVAC 554

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
            +F E+  R + V WN++IS   Q+   ++AL +   M     + +  T+  AL AC+ L
Sbjct: 555 SVFSELSTR-DVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKL 613

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
           AAL+ G++IH   I+ G     F+ NSLI MY +CG IQ +  +F      D++SWN +I
Sbjct: 614 AALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMI 673

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI 588
           + Y ++G   +A+ LF+     G+ P+ +TF  +LSACSH GL++ G K F+ M   YA+
Sbjct: 674 SVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAM 733

Query: 589 EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVE 648
           +P VE YACM+DLLSRAG+ +E  E ++ M  +PNA +WG+LLGACR+H N  L   A  
Sbjct: 734 DPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAAR 793

Query: 649 KLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFL 708
            L ELEPQ +  Y L++N+++ AGRW++  K+R  M+  G  K PGCSWIEVK ++H+F+
Sbjct: 794 YLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFV 853

Query: 709 SGDPKQ 714
            GD   
Sbjct: 854 VGDTSH 859



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 112/463 (24%), Positives = 205/463 (44%), Gaps = 59/463 (12%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMS-----QKNTVTYNSMISAYAKNGRVNDARKLFEQM- 72
           N  I+   +SG+ EEA K F +M      + N V++ ++I+   +NG   +A  +F +M 
Sbjct: 295 NAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMV 354

Query: 73  ---PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGEL 124
               + N ++  S ++   +   ++  RE+     +      DL     ++  Y +   +
Sbjct: 355 LEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSV 414

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP----SKNIVSWNSMLSG 180
           E AR  F ++  + D   WNAM+AGYA  G++ EA +LL  M       +I++WN +++G
Sbjct: 415 EVARRKFGMI-KQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTG 473

Query: 181 YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
           +T+ G+   A +FF+ M        ++ +D                  P    +S     
Sbjct: 474 FTQYGDGKAALEFFQRMH-------SMGMD------------------PNTTTISGALAA 508

Query: 241 SGYARN---GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
            G  RN   G+ +    L + + +   V  +A+I+ Y     +E A  +F E+  R+ V 
Sbjct: 509 CGQVRNLKLGKEIHGYVLRNHIELSTGVG-SALISMYSGCDSLEVACSVFSELSTRDVVV 567

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT-AMISGYVQNKRM------DEANQIFD 350
           W ++I    +  +   A  LL +M   N+   T  M+S      ++       E +Q   
Sbjct: 568 WNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFII 627

Query: 351 KIGTHDV-VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVK 409
           + G        N +I  Y +CG + ++  +F  M  +D+V+WN MI+ Y       DAV 
Sbjct: 628 RCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVN 687

Query: 410 IFE---EMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
           +F+    MG + N +++  L+S    +    +  K F +M  E
Sbjct: 688 LFQXFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTE 730



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 153/323 (47%), Gaps = 31/323 (9%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL-VSWNSMIAGYLH 89
           +E A  +FS++S ++ V +NS+ISA A++GR  +A  L  +M   N+ V+  +M++    
Sbjct: 550 LEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPA 609

Query: 90  NDK---VKEARELFDKMFRPDL----FSWALMITCYTRKGELEKARELFDLLPNKEDTAC 142
             K   +++ +E+   + R  L    F    +I  Y R G ++K+R +FDL+P + D   
Sbjct: 610 CSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQR-DLVS 668

Query: 143 WNAMVAGYAKIGNYNEAKKLLDAMPS----KNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           WN M++ Y   G   +A  L     +     N +++ ++LS  + +G +    K+F+ M+
Sbjct: 669 WNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMK 728

Query: 199 -----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSWVTMLSGYAR---NGRM 249
                +  V  +  M+D        +   +F +K+P E N   W ++L G  R   N  +
Sbjct: 729 TEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLL-GACRIHCNPDL 787

Query: 250 LE--ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN-----PVSWTTMI 302
            E  AR LF+  P ++   +  M   Y   G+ E+AA++   M ER        SW  + 
Sbjct: 788 AEYAARYLFELEP-QSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVK 846

Query: 303 DGYVRIAKLDEARRLLDQMPYKN 325
                    D +  L++Q+  K+
Sbjct: 847 RKLHSFVVGDTSHPLMEQISGKD 869



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 95/200 (47%), Gaps = 12/200 (6%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP-- 73
           F  N  I   G+ G ++++ +IF  M Q++ V++N MIS Y  +G   DA  LF+     
Sbjct: 636 FILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTM 695

Query: 74  --QRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEK 126
             + N +++ ++++   H+  ++E  + F  M       P +  +A M+   +R G+  +
Sbjct: 696 GLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNE 755

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK---KLLDAMPSKNIVSWNSMLSGYTK 183
             E  + +P + + A W +++       N + A+   + L  +  ++  ++  M + Y+ 
Sbjct: 756 TLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSA 815

Query: 184 NGEMHLASKFFEAMEERDVV 203
            G    A+K    M+ER V 
Sbjct: 816 AGRWEDAAKIRCLMKERGVT 835


>gi|297744558|emb|CBI37820.3| unnamed protein product [Vitis vinifera]
          Length = 504

 Score =  384 bits (986), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/501 (37%), Positives = 311/501 (62%), Gaps = 21/501 (4%)

Query: 218 LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR 277
           +D A + F  + E+NVVSW  M++G+ +NG +  A   F +MP R+  + +A++A  +Q 
Sbjct: 1   MDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQN 60

Query: 278 GQIEEAARLFIEMPERNP------VSWTTMIDGYVRIAKLDEARRLLDQMPY-------- 323
           G+++EA R+ +    ++        ++  ++ GY +  ++D+AR+L DQ+P+        
Sbjct: 61  GELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDG 120

Query: 324 ----KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
               +N+ +  +MI  YV+ + +  A  +FD++   D + WN MI GY +   M+EA  L
Sbjct: 121 GRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWML 180

Query: 380 FRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDA 439
           F++M N D +TWN+MI+G+AQ   ++ A  +F  +  ++N VSWN++I+G+  N  +  A
Sbjct: 181 FQEMPNPDTLTWNSMISGFAQKGNLELARALFATI-PQKNLVSWNSMIAGYENNGDYKGA 239

Query: 440 LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
            +++  M  +G+K D  TL+  LS C+  AAL LG QIH    K+  + D+ + NSLITM
Sbjct: 240 TELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKT-VIPDIPINNSLITM 298

Query: 500 YAKCGRIQNAELLFKDAD-PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           Y++CG I  A  +F +     +VISWN++I GYA +G A +A++LFE M    V P  +T
Sbjct: 299 YSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYIT 358

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
           FI VL+AC+H G V  G   F+ M   + IEP +EH+A ++D++ R G+L+EA +++  M
Sbjct: 359 FISVLNACAHAGFVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEAMDLINSM 418

Query: 619 KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVE 678
             +P+  +WG LLGACR+H N++L R+A E L +LEP+ ++ Y LL NM+A+ G+WD   
Sbjct: 419 PFEPDKAVWGALLGACRVHNNVELARVAAEALMKLEPESSAPYVLLHNMYADVGQWDNAT 478

Query: 679 KVRVSMEGSGAQKQPGCSWIE 699
           ++R+ ME +  +KQPG SW++
Sbjct: 479 EMRMMMERNNIRKQPGYSWVD 499



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 112/348 (32%), Positives = 196/348 (56%), Gaps = 27/348 (7%)

Query: 62  VNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRK 121
           +++A +LF+ M +RN+VSWN+M+ G+L N  V+ A E F +M   D  S + ++    + 
Sbjct: 1   MDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQN 60

Query: 122 GELEKARELFDLLPNKED------TACWNAMVAGYAKIGNYNEAKKLLDAMP-------- 167
           GEL++A+ +  L   ++D         +N ++AGY + G  ++A++L D +P        
Sbjct: 61  GELDEAKRIL-LTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKD 119

Query: 168 ----SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWK 223
                +N+VSWNSM+  Y K  ++  A   F+ M+ERD +SWN M+ GYV + D++ AW 
Sbjct: 120 GGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWM 179

Query: 224 FFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEA 283
            FQ++P  + ++W +M+SG+A+ G +  AR LF  +P +N+V+WN+MIA Y   G  + A
Sbjct: 180 LFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGA 239

Query: 284 ARLFIEM------PERNPVSWT-TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGY 336
             L+ +M      P+R+ +S   ++  G+  +    +  + + +    +I    ++I+ Y
Sbjct: 240 TELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVIPDIPINNSLITMY 299

Query: 337 VQNKRMDEANQIFDKIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQM 383
            +   + EA  IFD++    +V+ WN MI GYA  G   +A+ LF  M
Sbjct: 300 SRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFELM 347



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 114/412 (27%), Positives = 196/412 (47%), Gaps = 83/412 (20%)

Query: 10  NKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMS------------QKNTVTYNSMISAYA 57
           +KG  V   N  +   G++GRV++A ++F Q+             ++N V++NSMI  Y 
Sbjct: 79  DKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYV 138

Query: 58  KNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITC 117
           K   +  AR LF+QM +R+ +SWN+MI+GY+    ++EA  LF +M  PD  +W  MI+ 
Sbjct: 139 KARDIFSARVLFDQMKERDTISWNTMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISG 198

Query: 118 YTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------PSKNI 171
           + +KG LE AR LF  +P K +   WN+M+AGY   G+Y  A +L   M      P ++ 
Sbjct: 199 FAQKGNLELARALFATIPQK-NLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHT 257

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ 231
           +S  S+LS  +    +HL  +  + + +                            IP  
Sbjct: 258 LS--SVLSVCSGFAALHLGMQIHQQITK-----------------------TVIPDIPIN 292

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
           N  S +TM   Y+R G ++EAR +FD++ + + V++WNAMI  Y   G   +A  LF E+
Sbjct: 293 N--SLITM---YSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELF-EL 346

Query: 291 PER-----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
            +R       +++ ++++       + E R     M +K++A +  +        R++  
Sbjct: 347 MKRLKVRPTYITFISVLNACAHAGFVKEGR-----MHFKSMACEFGI------EPRIEHF 395

Query: 346 NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIA 396
             + D +G H               G+++EA++L   M    D   W  ++ 
Sbjct: 396 ASLVDIVGRH---------------GQLEEAMDLINSMPFEPDKAVWGALLG 432


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/619 (34%), Positives = 344/619 (55%), Gaps = 27/619 (4%)

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           DT     +++ YA    + +A  +LD +P  N+ S+++++  ++K  + H A   F  M 
Sbjct: 47  DTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQML 106

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV--------TMLSGYARNGRML 250
            R ++  N +L   V+     SA K  +++     VS          +++  Y +  ++ 
Sbjct: 107 TRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIR 166

Query: 251 EARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYV 306
           +A R+FD+M   +VV+W+A++AAY ++G ++EA RLF EM +     N +SW  MI G+ 
Sbjct: 167 DAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFN 226

Query: 307 RIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH----------D 356
                 EA  +   M  +        IS  +    + +   +   I  H          D
Sbjct: 227 HSGLYSEAVLMFLDMHLRGFEPDGTTISSVL--PAVGDLEDLVMGILIHGYVIKQGLVSD 284

Query: 357 VVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM-- 414
               + +I  Y +C    E   +F QM + D+ + N  I G ++  Q++ ++++F ++  
Sbjct: 285 KCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKD 344

Query: 415 -GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQL 473
            G   N VSW ++I+   QN   ++AL++F  M   G K +  T+ C L AC ++AAL  
Sbjct: 345 QGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMH 404

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           G+  H  +++ G   D++VG++LI MYAKCGRIQ + + F      +++ WN++IAGYA+
Sbjct: 405 GKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAM 464

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVE 593
           +G A EA+++F+ M   G  PD ++F  VLSACS  GL + G   F  M+  Y IE  VE
Sbjct: 465 HGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVE 524

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653
           HYACM+ LLSRAG+L++A+ M++ M + P+A +WG LL +CR+H N+ LG +A EKL EL
Sbjct: 525 HYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFEL 584

Query: 654 EPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPK 713
           EP     Y LLSN++A  G W+EV +VR  M+  G +K PGCSWIEVKN++H  L+GD  
Sbjct: 585 EPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKS 644

Query: 714 QCRTAEICNTLKTLAAQIR 732
             +  +I   L  L+ +++
Sbjct: 645 HPQMTQIIENLDKLSMEMK 663



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/455 (23%), Positives = 208/455 (45%), Gaps = 61/455 (13%)

Query: 5   LKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND 64
           + S+    S  F Q+  +    K  ++ +A ++F +M + + V+++++++AYA+ G V++
Sbjct: 139 IASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDE 198

Query: 65  ARKLFEQMP----QRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMIT 116
           A++LF +M     Q NL+SWN MIAG+ H+    EA  +F  M    F PD  + + ++ 
Sbjct: 199 AKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLP 258

Query: 117 CYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS 173
                 +L     +   +  +    D    +A++  Y K    +E  ++ D M   ++ S
Sbjct: 259 AVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGS 318

Query: 174 WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV 233
            N+ + G ++NG++  + + F  ++++ +                           E NV
Sbjct: 319 CNAFIFGLSRNGQVESSLRLFRQLKDQGM---------------------------ELNV 351

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR-GQIE-----EAARLF 287
           VSW +M++  ++NGR +EA  LF +M I  V   +  I   +   G I      +AA  F
Sbjct: 352 VSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCF 411

Query: 288 IEMPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRM 342
                R  +S      + +ID Y +  ++  +R   D +P KN+    A+I+GY  + + 
Sbjct: 412 ---SLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKA 468

Query: 343 DEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNK-----DIVTWNT 393
            EA +IFD +       D++ +  ++   +Q G  +E    F  M +K      +  +  
Sbjct: 469 KEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYAC 528

Query: 394 MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
           M+   ++  +++ A  +   M    +   W AL+S
Sbjct: 529 MVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLS 563



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 92/181 (50%), Gaps = 21/181 (11%)

Query: 33  EAIKIFSQMSQKNTVTY--NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHN 90
           +A   FS     +T  Y  +++I  YAK GR+  +R  F+ +P +NLV WN++IAGY  +
Sbjct: 406 KAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMH 465

Query: 91  DKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPNK-------ED 139
            K KEA E+FD M R    PD+ S+  +++  ++ G  E+    F+ + +K       E 
Sbjct: 466 GKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEH 525

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNGEMHL----ASKFF 194
            AC   MV   ++ G   +A  ++  MP + +   W ++LS    +  + L    A K F
Sbjct: 526 YAC---MVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLF 582

Query: 195 E 195
           E
Sbjct: 583 E 583



 Score = 47.4 bits (111), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 3/113 (2%)

Query: 455 HSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
           H+ L C  S  A L+     RQ H   +K+G  ND  +   L++ YA      +A L+  
Sbjct: 16  HTILNCLNSTTASLSQT---RQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLD 72

Query: 515 DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
                +V S+++LI  ++       A+  F +M+  G+ PD       + AC+
Sbjct: 73  LVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACA 125


>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
 gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/504 (38%), Positives = 312/504 (61%), Gaps = 12/504 (2%)

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PV 296
            +S  +   RM  A   + QM I NV  +NAMI  +VQ  Q  +A  L+++M   N  P 
Sbjct: 20  FISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQMLRANVSPT 79

Query: 297 SWT--TMIDGYVRIAKLDEARRLLDQMPYKN-----IAAQTAMISGYVQNKRMDEANQIF 349
           S+T  ++I     +++L  A  +   + ++N     +  QT+++  Y    R++E+ ++F
Sbjct: 80  SYTFPSLIKACGLVSQLRFAEAVHGHV-WRNGFDSHVFVQTSLVDFYSSMGRIEESVRVF 138

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVK 409
           D++   DV  W  M+ G  + G M  A  LF  M ++++ TWNT+I GYA++R++D A  
Sbjct: 139 DEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLIDGYARLREVDVAEL 198

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           +F +M   R+ +SW  +I+ + QN+   +AL +F  M + G   D  T+A  +SACAHL 
Sbjct: 199 LFNQM-PARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLG 257

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
           AL LG++IH+  ++ G+  D+++G++LI MYAKCG +  + L+F      ++  WNS+I 
Sbjct: 258 ALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIE 317

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE 589
           G A++G A EA+ +F++M  E + P+ VTF+ VLSAC+H GL++ G K F  MT  ++I 
Sbjct: 318 GLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIP 377

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649
           P VEHY CM+DLLS+AG L+EA ++++ MK++PNA IWG LL  C++H+N+++ ++A  K
Sbjct: 378 PGVEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALLSGCKLHRNLEIAQVAANK 437

Query: 650 LSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQ-PGCSWIEVKNQIHTFL 708
           L  LEP  +  Y LL NM+AE  RW E  K+R++M+  G +K+ PG SWIE+++Q+H F 
Sbjct: 438 LMVLEPGNSGYYTLLVNMNAEVNRWGEAAKIRLTMKEQGVEKRCPGSSWIEMESQVHQFA 497

Query: 709 SGDPKQCRTAEICNTLKTLAAQIR 732
           + D     + EI + L  L  Q++
Sbjct: 498 ASDKSHAASDEIYSLLAELDGQMK 521



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 207/422 (49%), Gaps = 29/422 (6%)

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
           +D    N  ++  +     + A      M   N+  +N+M+ G+ ++ +   A + +  M
Sbjct: 12  QDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQM 71

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIP--------EQNVVSWVTMLSGYARNGRM 249
              +V   +      ++   L S  +F + +         + +V    +++  Y+  GR+
Sbjct: 72  LRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGRI 131

Query: 250 LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIA 309
            E+ R+FD+MP R+V AW  M++  V+ G +  A RLF  MP+RN  +W T+IDGY R+ 
Sbjct: 132 EESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLIDGYARLR 191

Query: 310 KLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIK 365
           ++D A  L +QMP ++I + T MI+ Y QNKR  EA  +F+++  H    D V    +I 
Sbjct: 192 EVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVIS 251

Query: 366 GYAQCGRMD--EAINLF--RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
             A  G +D  + I+ +  +   N D+   + +I  YA+   +D ++ +F ++ + +N  
Sbjct: 252 ACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKL-REKNLF 310

Query: 422 SWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ----- 476
            WN++I G   + +  +AL +F  M +E  K +  T    LSAC H   ++ GR+     
Sbjct: 311 CWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASM 370

Query: 477 IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAIN 534
               +I  G  +       ++ + +K G ++ A  L +    +P  VI W +L++G  ++
Sbjct: 371 TRDHSIPPGVEHY----GCMVDLLSKAGLLEEALQLIRTMKLEPNAVI-WGALLSGCKLH 425

Query: 535 GN 536
            N
Sbjct: 426 RN 427



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 100/429 (23%), Positives = 203/429 (47%), Gaps = 29/429 (6%)

Query: 5   LKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND 64
           +K+  N+  Y+ NQ   I+ L    R++ A+  ++QM   N   YN+MI  + ++ +   
Sbjct: 6   VKTNTNQDCYLMNQF--ISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQ 63

Query: 65  ARKLFEQMPQRNL----VSWNSMI--AGYLHNDKVKEA--RELFDKMFRPDLFSWALMIT 116
           A +L+ QM + N+     ++ S+I   G +   +  EA    ++   F   +F    ++ 
Sbjct: 64  ALELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVD 123

Query: 117 CYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNS 176
            Y+  G +E++  +FD +P + D   W  MV+G  ++G+ + A +L D MP +N+ +WN+
Sbjct: 124 FYSSMGRIEESVRVFDEMPER-DVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNT 182

Query: 177 MLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV--- 233
           ++ GY +  E+ +A   F  M  RD++SW  M++ Y +      A   F ++ +  +   
Sbjct: 183 LIDGYARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPD 242

Query: 234 -VSWVTMLSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFI 288
            V+  T++S  A  G +   + +   +       +V   +A+I  Y + G ++ +  +F 
Sbjct: 243 EVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFF 302

Query: 289 EMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMI---------SGYVQN 339
           ++ E+N   W ++I+G       +EA  + D+M  + I                +G ++ 
Sbjct: 303 KLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEE 362

Query: 340 KRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAGY 398
            R   A+   D      V  +  M+   ++ G ++EA+ L R M +  + V W  +++G 
Sbjct: 363 GRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGALLSGC 422

Query: 399 AQIRQMDDA 407
              R ++ A
Sbjct: 423 KLHRNLEIA 431



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 122/263 (46%), Gaps = 13/263 (4%)

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
           N+D    N  I+  +   +MD AV  + +M +  N   +NA+I GF+Q+   + AL+++V
Sbjct: 11  NQDCYLMNQFISALSTFNRMDYAVLAYTQM-EIPNVFVYNAMIKGFVQSYQPVQALELYV 69

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG 504
            M +        T    + AC  ++ L+    +H    ++G+ + +FV  SL+  Y+  G
Sbjct: 70  QMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMG 129

Query: 505 RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLS 564
           RI+ +  +F +    DV +W ++++G    G+ + A +LF+ M    +A    T+  ++ 
Sbjct: 130 RIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLA----TWNTLID 185

Query: 565 ACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMK---IK 621
             + +  VD    LF  M     I      +  MI+  S+  R  EA  +   M    I 
Sbjct: 186 GYARLREVDVAELLFNQMPARDIIS-----WTTMINCYSQNKRFREALGVFNEMAKHGIS 240

Query: 622 PNAGIWGTLLGACRMHQNIKLGR 644
           P+     T++ AC     + LG+
Sbjct: 241 PDEVTMATVISACAHLGALDLGK 263



 Score = 46.2 bits (108), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 83/180 (46%), Gaps = 23/180 (12%)

Query: 477 IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGN 536
           ++ + +K+    D ++ N  I+  +   R+  A L +   +  +V  +N++I G+  +  
Sbjct: 1   MYAVMVKTNTNQDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQ 60

Query: 537 ATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM----------TEVY 586
             +A++L+ +M+   V+P   TF  ++ AC   GLV   L+  E +          + V+
Sbjct: 61  PVQALELYVQMLRANVSPTSYTFPSLIKAC---GLVS-QLRFAEAVHGHVWRNGFDSHVF 116

Query: 587 AIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL-GACRMHQNIKLGRI 645
               LV+ Y+ M       GR++E+  +   M  + +   W T++ G  R+      GR+
Sbjct: 117 VQTSLVDFYSSM-------GRIEESVRVFDEMPER-DVFAWTTMVSGLVRVGDMSSAGRL 168


>gi|359492699|ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Vitis vinifera]
          Length = 1545

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 243/735 (33%), Positives = 394/735 (53%), Gaps = 46/735 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTV----TYNSMISAYAKNGRVNDARKLFEQ--- 71
           +  +  L K+GR+ +AI     ++Q  +     TY  ++ +    G     RKL  +   
Sbjct: 54  DAHLNHLCKNGRLADAIACLDAIAQGGSNVKPNTYMQLLQSCIDQGSAELGRKLHARIGL 113

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           + + N      +++ Y     + EAR++F +M   +L++W+ MI  Y+R+    +  + F
Sbjct: 114 LEEMNPFVETKLVSMYAKCGSLGEARKVFGEMRERNLYAWSAMIGAYSREQMWREVVQHF 173

Query: 132 -----------DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG 180
                      + L  K   AC N    G A+ G    +  +   M + NI   NS+L+ 
Sbjct: 174 FFMMEDGIVPDEFLLPKILQACGNC---GDAETGKLIHSLVIRCGM-NFNIRVSNSILAV 229

Query: 181 YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSW 236
           Y K G +  A +FFE M+ RD VSWN ++ GY +  +L+ + + F+K+ E+ +    V+W
Sbjct: 230 YAKCGRLSCARRFFENMDYRDRVSWNSIITGYCQKGELEKSHQLFEKMQEEGIEPGLVTW 289

Query: 237 VTMLSGYARNGRMLEARRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEM-- 290
             +++ Y+++G+  +A  L  +M     + +V  W +MI+ + Q  +  +A  LF EM  
Sbjct: 290 NILINSYSQSGKCDDAMELMKKMESFRIVPDVFTWTSMISGFAQNNRRSQALELFREMLL 349

Query: 291 --PERNPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDE 344
              E N V+ T+ I     +  L +   L    +     +++    ++I  Y ++  +++
Sbjct: 350 AGIEPNGVTVTSGISACASLKALKKGMELHSVAVKIGCVEDLLVGNSLIDMYSKSGELED 409

Query: 345 ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQ 400
           A ++FD I   DV  WN MI GY Q G   +A +LF +M    V  ++VTWN MI+GY Q
Sbjct: 410 ARRVFDMILKKDVYTWNSMIGGYCQAGYCGKAYDLFIKMHESDVPPNVVTWNAMISGYIQ 469

Query: 401 IRQMDDAVKIFEEMGK----RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHS 456
               D A+ +F  M K    +R+T SWN+LI+G+LQN     AL IF  M     + +  
Sbjct: 470 NGDEDQAMDLFHRMEKDGLIKRDTASWNSLIAGYLQNGHKNKALGIFRQMQSFCIRPNSV 529

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
           T+   L ACA+L A +  ++IH   ++    ++L V N LI  YAK G I  A+ +F+  
Sbjct: 530 TMLSILPACANLVAAKKVKEIHGCILRRNLGSELSVANCLIDTYAKSGNIVYAQTIFQGI 589

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGL 576
              D+ISWNSLIAGY ++G +  A+ LF++M   GV P   TF+ ++ A S  G+VD G 
Sbjct: 590 SSKDIISWNSLIAGYVLHGCSDSALDLFDQMTKMGVKPSRGTFLSIIYAFSLSGMVDKGK 649

Query: 577 KLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRM 636
           ++F  M E Y I P +EH++ MIDLL R+G+L EA E ++ M I+P++ IW  LL A ++
Sbjct: 650 QVFSSMMEDYQILPGLEHHSAMIDLLGRSGKLGEAIEFIEDMAIEPDSCIWAALLTASKI 709

Query: 637 HQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCS 696
           H NI L   A E L ELEP   S +  +  M+A +G++++V K+R S + S  ++  GCS
Sbjct: 710 HGNIGLAIRAGECLLELEPSNFSIHQQILQMYALSGKFEDVSKLRKSEKRSETKQPLGCS 769

Query: 697 WIEVKNQIHTFLSGD 711
           WIE KN +HTF++ D
Sbjct: 770 WIEAKNIVHTFVADD 784



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 154/633 (24%), Positives = 269/633 (42%), Gaps = 134/633 (21%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKN---------------- 59
           F + K ++   K G + EA K+F +M ++N   +++MI AY++                 
Sbjct: 120 FVETKLVSMYAKCGSLGEARKVFGEMRERNLYAWSAMIGAYSREQMWREVVQHFFFMMED 179

Query: 60  ----------------GRVNDAR--KLFEQMPQR-----NLVSWNSMIAGYLHNDKVKEA 96
                           G   DA   KL   +  R     N+   NS++A Y    ++  A
Sbjct: 180 GIVPDEFLLPKILQACGNCGDAETGKLIHSLVIRCGMNFNIRVSNSILAVYAKCGRLSCA 239

Query: 97  RELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKI 153
           R  F+ M   D  SW  +IT Y +KGELEK+ +LF+ +     +     WN ++  Y++ 
Sbjct: 240 RRFFENMDYRDRVSWNSIITGYCQKGELEKSHQLFEKMQEEGIEPGLVTWNILINSYSQS 299

Query: 154 GNYNEAKKLLDAMPSKNIV----SWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSW 205
           G  ++A +L+  M S  IV    +W SM+SG+ +N     A + F  M     E + V+ 
Sbjct: 300 GKCDDAMELMKKMESFRIVPDVFTWTSMISGFAQNNRRSQALELFREMLLAGIEPNGVTV 359

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPE----QNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
              +     L  L    +      +    ++++   +++  Y+++G + +ARR+FD +  
Sbjct: 360 TSGISACASLKALKKGMELHSVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRVFDMILK 419

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRL 317
           ++V  WN+MI  Y Q G   +A  LFI+M E     N V+W  MI GY++    D+A  L
Sbjct: 420 KDVYTWNSMIGGYCQAGYCGKAYDLFIKMHESDVPPNVVTWNAMISGYIQNGDEDQAMDL 479

Query: 318 LDQMP-----YKNIAAQTAMISGYVQNKRMDEANQIFDKIGT------------------ 354
             +M       ++ A+  ++I+GY+QN   ++A  IF ++ +                  
Sbjct: 480 FHRMEKDGLIKRDTASWNSLIAGYLQNGHKNKALGIFRQMQSFCIRPNSVTMLSILPACA 539

Query: 355 ---------------------HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNT 393
                                 ++   N +I  YA+ G +  A  +F+ + +KDI++WN+
Sbjct: 540 NLVAAKKVKEIHGCILRRNLGSELSVANCLIDTYAKSGNIVYAQTIFQGISSKDIISWNS 599

Query: 394 MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA 453
           +IAGY      D A+ +F++M K     S    +S  +   F L        M  +GK+ 
Sbjct: 600 LIAGYVLHGCSDSALDLFDQMTKMGVKPSRGTFLS--IIYAFSLSG------MVDKGKQ- 650

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
                +  +     L  L+     HH A              +I +  + G++  A    
Sbjct: 651 ---VFSSMMEDYQILPGLE-----HHSA--------------MIDLLGRSGKLGEAIEFI 688

Query: 514 KD-ADPVDVISWNSLIAGYAINGNATEAIKLFE 545
           +D A   D   W +L+    I+GN   AI+  E
Sbjct: 689 EDMAIEPDSCIWAALLTASKIHGNIGLAIRAGE 721



 Score = 73.2 bits (178), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 129/282 (45%), Gaps = 10/282 (3%)

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
            KI + +  +      +A ++   +N    DA+     + Q G     +T    L +C  
Sbjct: 38  TKIHQPLTPKLKPKVTDAHLNHLCKNGRLADAIACLDAIAQGGSNVKPNTYMQLLQSCID 97

Query: 468 LAALQLGRQIHHLAIKSGYVNDL--FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
             + +LGR++H    + G + ++  FV   L++MYAKCG +  A  +F +    ++ +W+
Sbjct: 98  QGSAELGRKLH---ARIGLLEEMNPFVETKLVSMYAKCGSLGEARKVFGEMRERNLYAWS 154

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
           ++I  Y+      E ++ F  M+ +G+ PD      +L AC + G  + G KL   +   
Sbjct: 155 AMIGAYSREQMWREVVQHFFFMMEDGIVPDEFLLPKILQACGNCGDAETG-KLIHSLVIR 213

Query: 586 YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI 645
             +   +     ++ + ++ GRL  A    + M  +        + G C+  +  K  ++
Sbjct: 214 CGMNFNIRVSNSILAVYAKCGRLSCARRFFENMDYRDRVSWNSIITGYCQKGELEKSHQL 273

Query: 646 AVEKLSE--LEPQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685
             EK+ E  +EP   + + +L N ++++G+ D+  ++   ME
Sbjct: 274 -FEKMQEEGIEPGLVT-WNILINSYSQSGKCDDAMELMKKME 313



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 18/199 (9%)

Query: 10  NKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLF 69
           N GS +   N  I    KSG +  A  IF  +S K+ +++NS+I+ Y  +G  + A  LF
Sbjct: 558 NLGSELSVANCLIDTYAKSGNIVYAQTIFQGISSKDIISWNSLIAGYVLHGCSDSALDLF 617

Query: 70  EQM------PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCY 118
           +QM      P R   ++ S+I  +  +  V + +++F  M       P L   + MI   
Sbjct: 618 DQMTKMGVKPSRG--TFLSIIYAFSLSGMVDKGKQVFSSMMEDYQILPGLEHHSAMIDLL 675

Query: 119 TRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKK----LLDAMPSKNIVSW 174
            R G+L +A E  + +  + D+  W A++      GN   A +    LL+  PS N    
Sbjct: 676 GRSGKLGEAIEFIEDMAIEPDSCIWAALLTASKIHGNIGLAIRAGECLLELEPS-NFSIH 734

Query: 175 NSMLSGYTKNGEMHLASKF 193
             +L  Y  +G+    SK 
Sbjct: 735 QQILQMYALSGKFEDVSKL 753


>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g09040, mitochondrial; Flags: Precursor
 gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
 gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1028

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 248/810 (30%), Positives = 391/810 (48%), Gaps = 135/810 (16%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           ++N+    +++  YAK  R++DAR++FE +   N V W  + +GY+     +EA  +F++
Sbjct: 192 ERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFER 251

Query: 103 M----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGN--- 155
           M     RPD  ++  +I  Y R G+L+ AR LF  + +  D   WN M++G+ K G    
Sbjct: 252 MRDEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSSP-DVVAWNVMISGHGKRGCETV 310

Query: 156 -----YNEAKKLLDAMPS-------------------------------KNIVSWNSMLS 179
                +N  K  + +  S                                NI   +S++S
Sbjct: 311 AIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVS 370

Query: 180 GYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VS 235
            Y+K  +M  A+K FEA+EE++ V WN M+ GY    +     + F  +          +
Sbjct: 371 MYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFT 430

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPI-----RNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
           + ++LS  A +   LE    F  + I     +N+   NA++  Y + G +E+A ++F  M
Sbjct: 431 FTSLLSTCAAS-HDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERM 489

Query: 291 PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMIS----------GYVQNK 340
            +R+ V+W T+I  YV+     EA  L  +M    I +  A ++          G  Q K
Sbjct: 490 CDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGK 549

Query: 341 R-----------------------------MDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
           +                             + +A ++F  +    VV  N +I GY+Q  
Sbjct: 550 QVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQ-N 608

Query: 372 RMDEAINLFRQM----VNKDIVTWNTMIAG------------------------------ 397
            ++EA+ LF++M    VN   +T+ T++                                
Sbjct: 609 NLEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLG 668

Query: 398 ------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
                 Y   R M +A  +F E+   ++ V W  ++SG  QN F+ +ALK +  M  +G 
Sbjct: 669 ISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGV 728

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL 511
             D +T    L  C+ L++L+ GR IH L     +  D    N+LI MYAKCG ++ +  
Sbjct: 729 LPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQ 788

Query: 512 LFKDA-DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
           +F +     +V+SWNSLI GYA NG A +A+K+F+ M    + PD +TF+GVL+ACSH G
Sbjct: 789 VFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAG 848

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
            V  G K+FE M   Y IE  V+H ACM+DLL R G L EA + ++   +KP+A +W +L
Sbjct: 849 KVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSL 908

Query: 631 LGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQ 690
           LGACR+H +   G I+ EKL ELEPQ +S Y LLSN++A  G W++   +R  M   G +
Sbjct: 909 LGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRGVK 968

Query: 691 KQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           K PG SWI+V+ + H F +GD       +I
Sbjct: 969 KVPGYSWIDVEQRTHIFAAGDKSHSEIGKI 998



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 167/721 (23%), Positives = 315/721 (43%), Gaps = 121/721 (16%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARK----LFEQ--M 72
           N  +    K  +V  A K F  + +K+   +NSM+S Y+  G+     +    LFE    
Sbjct: 99  NAIVDLYAKCAQVSYAEKQFDFL-EKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIF 157

Query: 73  P---------------------------------QRNLVSWNSMIAGYLHNDKVKEAREL 99
           P                                 +RN     +++  Y   D++ +AR +
Sbjct: 158 PNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRV 217

Query: 100 FDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNY 156
           F+ +  P+   W  + + Y + G  E+A  +F+ + +   + D   +  ++  Y ++G  
Sbjct: 218 FEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKL 277

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE-- 214
            +A+ L   M S ++V+WN M+SG+ K G   +A ++F  M +  V S    L   +   
Sbjct: 278 KDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAI 337

Query: 215 --LDDLDSAWKFFQKIPE----QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN 268
             + +LD       +  +     N+    +++S Y++  +M  A ++F+ +  +N V WN
Sbjct: 338 GIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWN 397

Query: 269 AMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARR----LLDQ 320
           AMI  Y   G+  +   LF++M       +  ++T+++        L+   +    ++ +
Sbjct: 398 AMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKK 457

Query: 321 MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF 380
              KN+    A++  Y +   +++A QIF+++   D V WN +I  Y Q     EA +LF
Sbjct: 458 KLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLF 517

Query: 381 RQM---------------------------------------VNKDIVTWNTMIAGYAQI 401
           ++M                                       +++D+ T +++I  Y++ 
Sbjct: 518 KRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKC 577

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
             + DA K+F  +    + VS NALI+G+ QN    +A+ +F  M   G      T A  
Sbjct: 578 GIIKDARKVFSSL-PEWSVVSMNALIAGYSQNNLE-EAVVLFQEMLTRGVNPSEITFATI 635

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVND-LFVGNSLITMYAKCGRIQNAELLFKD-ADPV 519
           + AC    +L LG Q H    K G+ ++  ++G SL+ MY     +  A  LF + + P 
Sbjct: 636 VEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPK 695

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
            ++ W  +++G++ NG   EA+K ++EM  +GV PD  TF+ VL  CS          + 
Sbjct: 696 SIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCS----------VL 745

Query: 580 ECMTEVYAIEPLVEHYA---------CMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
             + E  AI  L+ H A          +ID+ ++ G +  + ++   M+ + N   W +L
Sbjct: 746 SSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSL 805

Query: 631 L 631
           +
Sbjct: 806 I 806



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 149/568 (26%), Positives = 262/568 (46%), Gaps = 54/568 (9%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S ++  +  ++   K  ++E A K+F  + +KN V +N+MI  YA NG  +   +LF  M
Sbjct: 360 SNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDM 419

Query: 73  PQRNL----VSWNSMIAGYLHNDKVKEARE----LFDKMFRPDLFSWALMITCYTRKGEL 124
                     ++ S+++    +  ++   +    +  K    +LF    ++  Y + G L
Sbjct: 420 KSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGAL 479

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLS----- 179
           E AR++F+ + ++ D   WN ++  Y +  N +EA  L   M    IVS  + L+     
Sbjct: 480 EDARQIFERMCDR-DNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKA 538

Query: 180 -----GYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
                G  +  ++H  S   +   +RD+ + + ++D Y +   +  A K F  +PE +VV
Sbjct: 539 CTHVHGLYQGKQVHCLS--VKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVV 596

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ--------------RGQI 280
           S   +++GY++N  + EA  LF +M  R V       A  V+               GQI
Sbjct: 597 SMNALIAGYSQN-NLEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQI 655

Query: 281 EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY-KNIAAQTAMISGYVQN 339
            +  R F    E   +S   M   Y+    + EA  L  ++   K+I   T M+SG+ QN
Sbjct: 656 TK--RGFSSEGEYLGISLLGM---YMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQN 710

Query: 340 KRMDEANQIFDKIGTHDVVCWN--VMIKGYAQCG-----RMDEAIN--LFRQMVNKDIVT 390
              +EA + + ++  HD V  +    +     C      R   AI+  +F    + D +T
Sbjct: 711 GFYEEALKFYKEM-RHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELT 769

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
            NT+I  YA+   M  + ++F+EM +R N VSWN+LI+G+ +N +  DALKIF  M Q  
Sbjct: 770 SNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSH 829

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAI-KSGYVNDLFVGNSLITMYAKCGRIQNA 509
              D  T    L+AC+H   +  GR+I  + I + G    +     ++ +  + G +Q A
Sbjct: 830 IMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEA 889

Query: 510 ELLFKDAD-PVDVISWNSLIAGYAINGN 536
           +   +  +   D   W+SL+    I+G+
Sbjct: 890 DDFIEAQNLKPDARLWSSLLGACRIHGD 917



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/456 (24%), Positives = 218/456 (47%), Gaps = 67/456 (14%)

Query: 248 RMLEARRLFDQMPIR--------------------------------------------- 262
           ++ ++R++FD+MP R                                             
Sbjct: 57  KLFKSRKVFDEMPQRLALALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEK 116

Query: 263 -------NVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKL 311
                  +V AWN+M++ Y   G+  +  R F+ + E     N  +++ ++    R   +
Sbjct: 117 QFDFLEKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNV 176

Query: 312 DEARRLLDQMPY----KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367
           +  R++   M      +N     A++  Y +  R+ +A ++F+ I   + VCW  +  GY
Sbjct: 177 EFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGY 236

Query: 368 AQCGRMDEAINLFRQMVNK----DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
            + G  +EA+ +F +M ++    D + + T+I  Y ++ ++ DA  +F EM    + V+W
Sbjct: 237 VKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSS-PDVVAW 295

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
           N +ISG  +      A++ F  M +   K+  STL   LSA   +A L LG  +H  AIK
Sbjct: 296 NVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIK 355

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
            G  ++++VG+SL++MY+KC +++ A  +F+  +  + + WN++I GYA NG + + ++L
Sbjct: 356 LGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMEL 415

Query: 544 FEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLS 603
           F +M   G   D  TF  +LS C+    ++ G +    + +    + L    A ++D+ +
Sbjct: 416 FMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNA-LVDMYA 474

Query: 604 RAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
           + G L++A ++ + M  + N   W T++G+    +N
Sbjct: 475 KCGALEDARQIFERMCDRDNV-TWNTIIGSYVQDEN 509



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 147/340 (43%), Gaps = 52/340 (15%)

Query: 310 KLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ 369
           KL ++R++ D+MP +   A    I   V +K +        ++G       N ++  YA+
Sbjct: 57  KLFKSRKVFDEMPQR--LALALRIGKAVHSKSLILGIDSEGRLG-------NAIVDLYAK 107

Query: 370 CGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
           C ++  A   F   + KD+  WN+M++ Y+ I +    ++ F  + + +           
Sbjct: 108 CAQVSYAEKQF-DFLEKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQ----------- 155

Query: 430 FLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND 489
              N+F                     T +  LS CA    ++ GRQIH   IK G   +
Sbjct: 156 IFPNKF---------------------TFSIVLSTCARETNVEFGRQIHCSMIKMGLERN 194

Query: 490 LFVGNSLITMYAKCGRIQNAELLFK-DADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
            + G +L+ MYAKC RI +A  +F+   DP + + W  L +GY   G   EA+ +FE M 
Sbjct: 195 SYCGGALVDMYAKCDRISDARRVFEWIVDP-NTVCWTCLFSGYVKAGLPEEAVLVFERMR 253

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
            EG  PD + F+ V++    +G +     LF  M+      P V  +  MI    + G  
Sbjct: 254 DEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMS-----SPDVVAWNVMISGHGKRGCE 308

Query: 609 DEAFEMVKGMK---IKPNAGIWGTLLGACRMHQNIKLGRI 645
             A E    M+   +K      G++L A  +  N+ LG +
Sbjct: 309 TVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLV 348


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 241/847 (28%), Positives = 412/847 (48%), Gaps = 135/847 (15%)

Query: 18   QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
            QN  ++  GK G +  A ++F+ +S ++ V+YN+M+  YA+   V +   LF QM    +
Sbjct: 166  QNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGI 225

Query: 78   ----VSWNSMIAGYLHNDKVKEARELF----DKMFRPDLFSWALMITCYTRKGELEKARE 129
                V++ +++  +     + E + +     ++    D+     ++T   R G+++ A++
Sbjct: 226  SPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQ 285

Query: 130  LFDLLPNKEDTACWNAMVAGYAKIGNYNEA----------------------------KK 161
             F    ++ D   +NA++A  A+ G+  EA                             K
Sbjct: 286  AFKGTADR-DVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSK 344

Query: 162  LLDAMP-----------SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLD 210
             L+A             S ++   N+++S Y + G++  A + F  M +RD++SWN ++ 
Sbjct: 345  ALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIA 404

Query: 211  GYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSG------------------------ 242
            GY   +D   A + ++++  + V    V+++ +LS                         
Sbjct: 405  GYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKS 464

Query: 243  -----------YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
                       Y R G ++EA+ +F+    R+V++WN+MIA + Q G  E A +LF EM 
Sbjct: 465  NGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQ 524

Query: 292  ----ERNPVSWTTMIDGYVRIAKLDEAR----RLLDQMPYKNIAAQTAMISGYVQNKRMD 343
                E + +++ +++ G      L+  +    R+ +     ++    A+I+ Y++   + 
Sbjct: 525  NEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQ 584

Query: 344  EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----------------- 386
            +A  +F  +   DV+ W  MI G A  G   +AI LF QM N+                 
Sbjct: 585  DARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCT 644

Query: 387  ----------------------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
                                  D    N +I+ Y++   M DA ++F++M   R+ VSWN
Sbjct: 645  SSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKM-PSRDIVSWN 703

Query: 425  ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
             +I+G+ QN     A++    M ++    +  +    L+AC+  +AL+ G+++H   +K 
Sbjct: 704  KIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKR 763

Query: 485  GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLF 544
                D+ VG +LI+MYAKCG    A+ +F +    +V++WN++I  YA +G A++A+  F
Sbjct: 764  KLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFF 823

Query: 545  EEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSR 604
              M  EG+ PD  TF  +LSAC+H GLV  G ++F  M   Y + P +EHY C++ LL R
Sbjct: 824  NCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGR 883

Query: 605  AGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALL 664
            A R  EA  ++  M   P+A +W TLLGACR+H NI L   A     +L  +  + Y LL
Sbjct: 884  ARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILL 943

Query: 665  SNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTL 724
            SN++A AGRWD+V K+R  MEG G +K+PG SWIEV N IH F++ D     TAEI   L
Sbjct: 944  SNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAEL 1003

Query: 725  KTLAAQI 731
            K L+ ++
Sbjct: 1004 KRLSVEM 1010



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 195/766 (25%), Positives = 344/766 (44%), Gaps = 151/766 (19%)

Query: 31  VEEAIKIFSQMSQ----KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           + EA +I +QM +     +    N +I+ Y K   V DA ++F++MP+R+++SWNS+I+ 
Sbjct: 43  LPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISC 102

Query: 87  YLHNDKVKEARELFDKM----FRPDLFSW-ALMITCYTRKGELEKARELFDLLPN---KE 138
           Y      K+A +LF++M    F P+  ++ +++  CY+   ELE  +++   +     + 
Sbjct: 103 YAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYS-PAELENGKKIHSQIIKAGYQR 161

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           D    N++++ Y K G+   A+++   +  +++VS+N+ML  Y +   +      F  M 
Sbjct: 162 DPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMS 221

Query: 199 ER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRML 250
                 D V++  +LD +     LD   +  +   E+ + S +     +++   R G + 
Sbjct: 222 SEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVD 281

Query: 251 EARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMI---- 302
            A++ F     R+VV +NA+IAA  Q G   EA   +  M       N  ++ +++    
Sbjct: 282 SAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACS 341

Query: 303 -----------------DG--------------YVRIAKLDEARRLLDQMPYKNIAAQTA 331
                            DG              Y R   L +AR L   MP +++ +  A
Sbjct: 342 TSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNA 401

Query: 332 MISGYVQNKRMDEANQIFDKIGTHDV------------VC-------------------- 359
           +I+GY + +   EA +++ ++ +  V             C                    
Sbjct: 402 IIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSG 461

Query: 360 -------WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFE 412
                   N ++  Y +CG + EA N+F     +D+++WN+MIAG+AQ    + A K+F+
Sbjct: 462 IKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQ 521

Query: 413 EMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQ 472
           EM                 QN               E  + D+ T A  LS C +  AL+
Sbjct: 522 EM-----------------QN---------------EELEPDNITFASVLSGCKNPEALE 549

Query: 473 LGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYA 532
           LG+QIH    +SG   D+ +GN+LI MY +CG +Q+A  +F      DV+SW ++I G A
Sbjct: 550 LGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCA 609

Query: 533 INGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE-CMTEVYAIEPL 591
             G   +AI+LF +M  EG  P   TF  +L  C+    +D G K+    +   Y ++  
Sbjct: 610 DQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTG 669

Query: 592 VEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGI--WGTLLGACRMHQNIKLGRIAVEK 649
           V +   +I   S++G + +A E+   M   P+  I  W  ++      QN  LG+ AVE 
Sbjct: 670 VGN--ALISAYSKSGSMTDAREVFDKM---PSRDIVSWNKIIAG--YAQN-GLGQTAVEF 721

Query: 650 LSELE-----PQKTSCYALLSNMHA----EAGRWDEVEKVRVSMEG 686
             +++     P K S  +LL+   +    E G+    E V+  ++G
Sbjct: 722 AYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQG 767



 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 106/419 (25%), Positives = 190/419 (45%), Gaps = 48/419 (11%)

Query: 292 ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY----KNIAAQTAMISGYVQNKRMDEANQ 347
           E    ++  ++    R   L EA+R+  QM       +I     +I+ YV+ + + +A+Q
Sbjct: 24  ETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQ 83

Query: 348 IFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN---------------------- 385
           +F ++   DV+ WN +I  YAQ G   +A  LF +M N                      
Sbjct: 84  VFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAE 143

Query: 386 -----------------KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
                            +D    N++++ Y +   +  A ++F  +  R + VS+N ++ 
Sbjct: 144 LENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPR-DVVSYNTMLG 202

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
            + Q  +  + L +F  M+ EG   D  T    L A    + L  G++IH L ++ G  +
Sbjct: 203 LYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNS 262

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           D+ VG +L+TM  +CG + +A+  FK     DV+ +N+LIA  A +G+  EA + +  M 
Sbjct: 263 DIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMR 322

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
            +GVA +  T++ +L+ACS    ++ G KL             V+    +I + +R G L
Sbjct: 323 SDGVALNRTTYLSILNACSTSKALEAG-KLIHSHISEDGHSSDVQIGNALISMYARCGDL 381

Query: 609 DEAFEMVKGMKIKPNAGIWGTLL-GACRMHQNIKLGRIAVEKLSE-LEPQKTSCYALLS 665
            +A E+   M  K +   W  ++ G  R     +  R+  +  SE ++P + +   LLS
Sbjct: 382 PKARELFYTMP-KRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLS 439



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 167/372 (44%), Gaps = 91/372 (24%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
           +++ +KS G+  + + N  ++       G + EA  +F     ++ +++NSMI+ +A++G
Sbjct: 458 LRSGIKSNGHLANALMNMYRRC------GSLMEAQNVFEGTQARDVISWNSMIAGHAQHG 511

Query: 61  RVNDARKLFEQMPQRNL----VSWNSMIAG------------------------------ 86
               A KLF++M    L    +++ S+++G                              
Sbjct: 512 SYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGN 571

Query: 87  -----YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE--- 138
                Y+    +++AR +F  +   D+ SW  MI     +GE  KA ELF  + N+    
Sbjct: 572 ALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRP 631

Query: 139 -----------------------------------DTACWNAMVAGYAKIGNYNEAKKLL 163
                                              DT   NA+++ Y+K G+  +A+++ 
Sbjct: 632 VKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVF 691

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV----SWNLMLDGYVELDDLD 219
           D MPS++IVSWN +++GY +NG    A +F   M+E+DVV    S+  +L+       L+
Sbjct: 692 DKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALE 751

Query: 220 SAWKFFQKIPEQ----NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
              +   +I ++    +V     ++S YA+ G   EA+ +FD +  +NVV WNAMI AY 
Sbjct: 752 EGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYA 811

Query: 276 QRGQIEEAARLF 287
           Q G   +A   F
Sbjct: 812 QHGLASKALGFF 823



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 120/243 (49%), Gaps = 16/243 (6%)

Query: 431 LQNEFHLDALKIFVLMTQEGK--KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
           ++NE H    +  V  T + +  + + +T    L  C     L   ++IH   +++    
Sbjct: 1   MRNERHCGPDREDVSNTHQPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGP 60

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           D+F+ N LI MY KC  + +A  +FK+    DVISWNSLI+ YA  G   +A +LFEEM 
Sbjct: 61  DIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQ 120

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV-YAIEPLVEHYACMIDLLSRAGR 607
             G  P+ +T+I +L+AC     ++ G K+   + +  Y  +P V++   ++ +  + G 
Sbjct: 121 NAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQN--SLLSMYGKCGD 178

Query: 608 LDEAFEMVKGMKIKPNAGI-WGTLLGACRMHQNIK-----LGRIAVEKLSELEPQKTSCY 661
           L  A ++  G  I P   + + T+LG       +K      G+++ E +S   P K +  
Sbjct: 179 LPRARQVFAG--ISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGIS---PDKVTYI 233

Query: 662 ALL 664
            LL
Sbjct: 234 NLL 236


>gi|302760949|ref|XP_002963897.1| hypothetical protein SELMODRAFT_80086 [Selaginella moellendorffii]
 gi|300169165|gb|EFJ35768.1| hypothetical protein SELMODRAFT_80086 [Selaginella moellendorffii]
          Length = 714

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/618 (33%), Positives = 324/618 (52%), Gaps = 4/618 (0%)

Query: 118 YTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSM 177
           Y R G +  A   FD + N    +  N MVA YA+ G  + A +  D  P+K++VSWN M
Sbjct: 2   YGRCGCVADAVICFDSIRNPTAFS-HNVMVAAYAQNGYLDLAARTFDRTPNKDVVSWNGM 60

Query: 178 LSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV 237
           LSGY + G    A  FF+ M  ++ VS+N ++  +    +L  A   F  +  ++  +W 
Sbjct: 61  LSGYARYGSFRDAKLFFDEMPYKNTVSYNTLISAFARQGNLAEARNLFNSMKIRDAATWN 120

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
            +++GY +      AR +FD+ P+RNVV WN MI  Y Q G ++ A  LF  MP+ N V 
Sbjct: 121 VLIAGYTQRCLCTHAREIFDRAPVRNVVTWNTMIGGYAQAGHLDNATELFGLMPQWNEVC 180

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV 357
           W  +I G  R  +L +A  L   +P++++ +  AMI G V +  +  A  +F ++   DV
Sbjct: 181 WNALISGMGRNRRLPDALELFQALPFRDMVSWIAMIQGCVHSGDLHRAWDLFKRMPLTDV 240

Query: 358 VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
           V W  ++  +A  G + EA +LF  +  KD    N MIA Y    ++  A  +F+  G  
Sbjct: 241 VIWTAIVTAFAHSGFLQEARDLFDAIPIKDAAAVNAMIAAYGLHGEIARAKDLFDSAGDL 300

Query: 418 RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI 477
           R+ +SWNAL++ F QN     AL IF  M  EG   D  +   AL AC  L AL+ G+ +
Sbjct: 301 RDVISWNALLAAFSQNGHARQALGIFAGMDLEGIHPDGISFVSALDACTILTALREGKLL 360

Query: 478 HH---LAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
           H    LA +     +  +  +L+  YAKCGR+  A  LF      D I  NS++  YA +
Sbjct: 361 HEELLLASQGEIFVEASLATALVNFYAKCGRLDEARSLFDAMAFCDAILLNSMLGAYAQS 420

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEH 594
           G A EA  LF+  ++ G+ PD VTF+ ++SACSH GL+D G + F  +   +A+ P   H
Sbjct: 421 GRAGEAADLFQRAILSGIHPDAVTFVSMVSACSHAGLLDLGHRYFLSLVGDFALAPHAAH 480

Query: 595 YACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE 654
           Y CM+DLL+R G L +  +++  M  +P    W +LL  CR H ++  G     + +   
Sbjct: 481 YTCMVDLLARTGHLMDGEDLLDAMPFQPEYTAWKSLLAGCRTHGDVGRGARLARRATNAN 540

Query: 655 PQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQ 714
           P  +S Y LLS ++  AG+  +   VR +M+    +K  G S I +K + H F++G    
Sbjct: 541 PVCSSPYVLLSRLYDAAGKHGDGISVRKAMDARRLRKPAGLSSITIKGRAHEFVAGGKNH 600

Query: 715 CRTAEICNTLKTLAAQIR 732
              + I + L +L A++R
Sbjct: 601 PEISAILDELHSLNAKMR 618



 Score =  244 bits (622), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 132/443 (29%), Positives = 232/443 (52%), Gaps = 48/443 (10%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F+ N  +    ++G ++ A + F +   K+ V++N M+S YA+ G   DA+  F++MP +
Sbjct: 24  FSHNVMVAAYAQNGYLDLAARTFDRTPNKDVVSWNGMLSGYARYGSFRDAKLFFDEMPYK 83

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           N VS+N++I+ +     + EAR LF+ M   D  +W ++I  YT++     ARE+FD  P
Sbjct: 84  NTVSYNTLISAFARQGNLAEARNLFNSMKIRDAATWNVLIAGYTQRCLCTHAREIFDRAP 143

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
            + +   WN M+ GYA+ G+ + A +L   MP  N V WN+++SG  +N  +  A + F+
Sbjct: 144 VR-NVVTWNTMIGGYAQAGHLDNATELFGLMPQWNEVCWNALISGMGRNRRLPDALELFQ 202

Query: 196 AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRL 255
           A+  RD+VSW  M+ G V   DL  AW  F+++P  +VV W  +++ +A +G + EAR L
Sbjct: 203 ALPFRDMVSWIAMIQGCVHSGDLHRAWDLFKRMPLTDVVIWTAIVTAFAHSGFLQEARDL 262

Query: 256 FDQMPI--------------------------------RNVVAWNAMIAAYVQRGQIEEA 283
           FD +PI                                R+V++WNA++AA+ Q G   +A
Sbjct: 263 FDAIPIKDAAAVNAMIAAYGLHGEIARAKDLFDSAGDLRDVISWNALLAAFSQNGHARQA 322

Query: 284 ARLF----IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM-------PYKNIAAQTAM 332
             +F    +E    + +S+ + +D    +  L E + L +++        +   +  TA+
Sbjct: 323 LGIFAGMDLEGIHPDGISFVSALDACTILTALREGKLLHEELLLASQGEIFVEASLATAL 382

Query: 333 ISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDI 388
           ++ Y +  R+DEA  +FD +   D +  N M+  YAQ GR  EA +LF++     ++ D 
Sbjct: 383 VNFYAKCGRLDEARSLFDAMAFCDAILLNSMLGAYAQSGRAGEAADLFQRAILSGIHPDA 442

Query: 389 VTWNTMIAGYAQIRQMDDAVKIF 411
           VT+ +M++  +    +D   + F
Sbjct: 443 VTFVSMVSACSHAGLLDLGHRYF 465



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 147/535 (27%), Positives = 254/535 (47%), Gaps = 51/535 (9%)

Query: 56  YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMI 115
           Y + G V DA   F+ +      S N M+A Y  N  +  A   FD+    D+ SW  M+
Sbjct: 2   YGRCGCVADAVICFDSIRNPTAFSHNVMVAAYAQNGYLDLAARTFDRTPNKDVVSWNGML 61

Query: 116 TCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN 175
           + Y R G    A+  FD +P K +T  +N +++ +A+ GN  EA+ L ++M  ++  +WN
Sbjct: 62  SGYARYGSFRDAKLFFDEMPYK-NTVSYNTLISAFARQGNLAEARNLFNSMKIRDAATWN 120

Query: 176 SMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
            +++GYT+      A + F+    R+VV+WN M+ GY +   LD+A + F  +P+ N V 
Sbjct: 121 VLIAGYTQRCLCTHAREIFDRAPVRNVVTWNTMIGGYAQAGHLDNATELFGLMPQWNEVC 180

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
           W  ++SG  RN R+ +A  LF  +P R++V+W AMI   V  G +  A  LF  MP  + 
Sbjct: 181 WNALISGMGRNRRLPDALELFQALPFRDMVSWIAMIQGCVHSGDLHRAWDLFKRMPLTDV 240

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT- 354
           V WT ++  +     L EAR L D +P K+ AA  AMI+ Y  +  +  A  +FD  G  
Sbjct: 241 VIWTAIVTAFAHSGFLQEARDLFDAIPIKDAAAVNAMIAAYGLHGEIARAKDLFDSAGDL 300

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTW------------------- 391
            DV+ WN ++  ++Q G   +A+ +F  M    ++ D +++                   
Sbjct: 301 RDVISWNALLAAFSQNGHARQALGIFAGMDLEGIHPDGISFVSALDACTILTALREGKLL 360

Query: 392 -------------------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
                                ++  YA+  ++D+A  +F+ M    + +  N+++  + Q
Sbjct: 361 HEELLLASQGEIFVEASLATALVNFYAKCGRLDEARSLFDAMAF-CDAILLNSMLGAYAQ 419

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
           +    +A  +F      G   D  T    +SAC+H   L LG + + L++   +      
Sbjct: 420 SGRAGEAADLFQRAILSGIHPDAVTFVSMVSACSHAGLLDLGHR-YFLSLVGDFALAPHA 478

Query: 493 GN--SLITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGNATEAIKL 543
            +   ++ + A+ G + + E L  DA P   +  +W SL+AG   +G+     +L
Sbjct: 479 AHYTCMVDLLARTGHLMDGEDLL-DAMPFQPEYTAWKSLLAGCRTHGDVGRGARL 532



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 119/429 (27%), Positives = 200/429 (46%), Gaps = 26/429 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V   N  I    ++G ++ A ++F  M Q N V +N++IS   +N R+ DA +LF+ +P 
Sbjct: 147 VVTWNTMIGGYAQAGHLDNATELFGLMPQWNEVCWNALISGMGRNRRLPDALELFQALPF 206

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           R++VSW +MI G +H+  +  A +LF +M   D+  W  ++T +   G L++AR+LFD +
Sbjct: 207 RDMVSWIAMIQGCVHSGDLHRAWDLFKRMPLTDVVIWTAIVTAFAHSGFLQEARDLFDAI 266

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS-KNIVSWNSMLSGYTKNGEMHLASKF 193
           P K D A  NAM+A Y   G    AK L D+    ++++SWN++L+ +++NG    A   
Sbjct: 267 PIK-DAAAVNAMIAAYGLHGEIARAKDLFDSAGDLRDVISWNALLAAFSQNGHARQALGI 325

Query: 194 FEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQK--IPEQNVV----SWVTMLSG- 242
           F  M+      D +S+   LD    L  L       ++  +  Q  +    S  T L   
Sbjct: 326 FAGMDLEGIHPDGISFVSALDACTILTALREGKLLHEELLLASQGEIFVEASLATALVNF 385

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF----IEMPERNPVSW 298
           YA+ GR+ EAR LFD M   + +  N+M+ AY Q G+  EAA LF    +     + V++
Sbjct: 386 YAKCGRLDEARSLFDAMAFCDAILLNSMLGAYAQSGRAGEAADLFQRAILSGIHPDAVTF 445

Query: 299 TTMIDGYVRIAKLDEARRLL-----DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
            +M+        LD   R       D     + A  T M+    +   + +   + D + 
Sbjct: 446 VSMVSACSHAGLLDLGHRYFLSLVGDFALAPHAAHYTCMVDLLARTGHLMDGEDLLDAMP 505

Query: 354 TH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIA---GYAQIRQMDDAVK 409
              +   W  ++ G    G +     L R+  N + V  +  +     Y    +  D + 
Sbjct: 506 FQPEYTAWKSLLAGCRTHGDVGRGARLARRATNANPVCSSPYVLLSRLYDAAGKHGDGIS 565

Query: 410 IFEEMGKRR 418
           + + M  RR
Sbjct: 566 VRKAMDARR 574



 Score = 45.4 bits (106), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 10/133 (7%)

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           MY +CG + +A + F         S N ++A YA NG    A + F+    +    D V+
Sbjct: 1   MYGRCGCVADAVICFDSIRNPTAFSHNVMVAAYAQNGYLDLAARTFDRTPNK----DVVS 56

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
           + G+LS  +  G        F+ M     +      Y  +I   +R G L EA  +   M
Sbjct: 57  WNGMLSGYARYGSFRDAKLFFDEMPYKNTVS-----YNTLISAFARQGNLAEARNLFNSM 111

Query: 619 KIKPNAGIWGTLL 631
           KI+ +A  W  L+
Sbjct: 112 KIR-DAATWNVLI 123


>gi|255551485|ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543876|gb|EEF45402.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 710

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/609 (35%), Positives = 341/609 (55%), Gaps = 32/609 (5%)

Query: 114 MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS 173
           +I  Y + G L  A+ +FD+ P + D   +N M++GY K G  + A +L D MP K  VS
Sbjct: 107 LINMYGKCGLLVDAKSIFDVCP-RSDPVSYNVMISGYVKSGQLDYACELFDEMPVKGCVS 165

Query: 174 WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFF-------- 225
           + +M+ G+++N   + A + F+ M    VV         V +  L SA+  F        
Sbjct: 166 YTTMIMGFSQNECWNQAVELFKQMRNVGVVP------NEVTIATLVSAYSHFGGIWACRM 219

Query: 226 ------QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ 279
                 + + E+ V+    +L  Y     ++EAR LFD+MP +N+V+WN M+  Y + G 
Sbjct: 220 LHGLVIKMLFEEFVLVSTNLLRMYCVCSSLVEARALFDEMPEKNIVSWNVMLNGYSKAGF 279

Query: 280 IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA----RRLLDQMPYKNIAAQTAMISG 335
           ++ A  +F  +P ++ V+W T+IDGYVR+ +++EA    R ++      N      +ISG
Sbjct: 280 VDSARVVFERIPNKDLVTWGTIIDGYVRVERINEALMMYRSMISAGWEPNDVMMVDLISG 339

Query: 336 YVQNKRMDEANQIFDKIGTHDVVCWN----VMIKGYAQCGRMDEAINLFRQMVNKDIVTW 391
             +   M E  Q+   +      C++     +I  YA CGR++EA   FR    +++ +W
Sbjct: 340 CGRTMAMTEGQQLLSAVVKMGFDCYDFIQSTIIHLYAACGRINEACLQFRIGSKENVASW 399

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
           N +IAGY + R +D A+++F EM   R+  SW+ +ISG+ QNE    AL++F  M   G 
Sbjct: 400 NALIAGYVRNRMIDRAMELFNEM-PERDVFSWSTMISGYTQNEQPNLALELFHKMVASGI 458

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA-E 510
           K +  T+   LSA A    L+ GR  H     +       +  ++I MYAKCG I NA E
Sbjct: 459 KPNEVTMVSVLSAIATSGTLKEGRWAHEYVHNNSITVSDNLSAAIIDMYAKCGSINNALE 518

Query: 511 LLFKDADPVDVIS-WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
           + ++  +    +S WN++I G A++G+A  ++K+F ++    +  + +TFIGVL+AC HV
Sbjct: 519 VFYEIREKASTVSPWNAIICGLAVHGHANLSLKIFSDLERRHIKLNAITFIGVLTACCHV 578

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629
           GLV+ G + F  M   ++I+P ++HY CM+DLL RAGRL+EA EM++ M +K +  IWGT
Sbjct: 579 GLVESGKRHFMSMKSEHSIDPDIKHYGCMVDLLGRAGRLEEAEEMIRSMPMKADVVIWGT 638

Query: 630 LLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689
           LL ACR H N+ +G  A E L+ LEP   +   LLSNM+A+AG+W++   VR +M+    
Sbjct: 639 LLAACRTHGNVDVGERAAENLARLEPSHGASRVLLSNMYADAGKWEDAFLVRRAMQSHRM 698

Query: 690 QKQPGCSWI 698
           Q+ PG S +
Sbjct: 699 QRLPGYSGV 707



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 164/559 (29%), Positives = 285/559 (50%), Gaps = 28/559 (5%)

Query: 5   LKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND 64
           L S    GS  F QN  I   GK G + +A  IF    + + V+YN MIS Y K+G+++ 
Sbjct: 91  LVSKSGLGSNNFIQNSLINMYGKCGLLVDAKSIFDVCPRSDPVSYNVMISGYVKSGQLDY 150

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTR 120
           A +LF++MP +  VS+ +MI G+  N+   +A ELF +M      P+  + A +++ Y+ 
Sbjct: 151 ACELFDEMPVKGCVSYTTMIMGFSQNECWNQAVELFKQMRNVGVVPNEVTIATLVSAYSH 210

Query: 121 KGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSM 177
            G +   R L  L+     +E       ++  Y    +  EA+ L D MP KNIVSWN M
Sbjct: 211 FGGIWACRMLHGLVIKMLFEEFVLVSTNLLRMYCVCSSLVEARALFDEMPEKNIVSWNVM 270

Query: 178 LSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNV 233
           L+GY+K G +  A   FE +  +D+V+W  ++DGYV ++ ++ A   ++ +     E N 
Sbjct: 271 LNGYSKAGFVDSARVVFERIPNKDLVTWGTIIDGYVRVERINEALMMYRSMISAGWEPND 330

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN----AMIAAYVQRGQIEEAARLFIE 289
           V  V ++SG  R   M E ++L   +       ++     +I  Y   G+I EA   F  
Sbjct: 331 VMMVDLISGCGRTMAMTEGQQLLSAVVKMGFDCYDFIQSTIIHLYAACGRINEACLQFRI 390

Query: 290 MPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF 349
             + N  SW  +I GYVR   +D A  L ++MP +++ + + MISGY QN++ + A ++F
Sbjct: 391 GSKENVASWNALIAGYVRNRMIDRAMELFNEMPERDVFSWSTMISGYTQNEQPNLALELF 450

Query: 350 DKIGTHDV----VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAG----YAQI 401
            K+    +    V    ++   A  G + E       + N  I   + + A     YA+ 
Sbjct: 451 HKMVASGIKPNEVTMVSVLSAIATSGTLKEGRWAHEYVHNNSITVSDNLSAAIIDMYAKC 510

Query: 402 RQMDDAVKIFEEMGKRRNTVS-WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
             +++A+++F E+ ++ +TVS WNA+I G   +     +LKIF  + +   K +  T   
Sbjct: 511 GSINNALEVFYEIREKASTVSPWNAIICGLAVHGHANLSLKIFSDLERRHIKLNAITFIG 570

Query: 461 ALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN--SLITMYAKCGRIQNAELLFKDAD- 517
            L+AC H+  ++ G++ H +++KS +  D  + +   ++ +  + GR++ AE + +    
Sbjct: 571 VLTACCHVGLVESGKR-HFMSMKSEHSIDPDIKHYGCMVDLLGRAGRLEEAEEMIRSMPM 629

Query: 518 PVDVISWNSLIAGYAINGN 536
             DV+ W +L+A    +GN
Sbjct: 630 KADVVIWGTLLAACRTHGN 648



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 6/165 (3%)

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
            L  AL  C+    L  G+QIH L  KSG  ++ F+ NSLI MY KCG + +A+ +F   
Sbjct: 68  VLVSALKFCSDHLFLSQGKQIHCLVSKSGLGSNNFIQNSLINMYGKCGLLVDAKSIFDVC 127

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGL 576
              D +S+N +I+GY  +G    A +LF+EM ++G     V++  ++   S     +  +
Sbjct: 128 PRSDPVSYNVMISGYVKSGQLDYACELFDEMPVKGC----VSYTTMIMGFSQNECWNQAV 183

Query: 577 KLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIK 621
           +LF+ M  V  + P     A ++   S  G +  A  M+ G+ IK
Sbjct: 184 ELFKQMRNV-GVVPNEVTIATLVSAYSHFGGI-WACRMLHGLVIK 226



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 11/151 (7%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQK-NTVT-YNSMISAYAKNGRVNDARKLFEQMPQR---- 75
           I    K G +  A+++F ++ +K +TV+ +N++I   A +G  N + K+F  + +R    
Sbjct: 504 IDMYAKCGSINNALEVFYEIREKASTVSPWNAIICGLAVHGHANLSLKIFSDLERRHIKL 563

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKAREL 130
           N +++  ++    H   V+  +  F  M       PD+  +  M+    R G LE+A E+
Sbjct: 564 NAITFIGVLTACCHVGLVESGKRHFMSMKSEHSIDPDIKHYGCMVDLLGRAGRLEEAEEM 623

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKK 161
              +P K D   W  ++A     GN +  ++
Sbjct: 624 IRSMPMKADVVIWGTLLAACRTHGNVDVGER 654


>gi|119638460|gb|ABL85051.1| hypothetical protein 57h21.26 [Brachypodium sylvaticum]
          Length = 753

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 221/731 (30%), Positives = 388/731 (53%), Gaps = 49/731 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N+ +    ++GR + A ++F  M +++ V++NS +SA+A++G    A  LF ++ +
Sbjct: 25  VVSGNRLMGAHLRAGRPDAAREVFDGMPRRDVVSWNSAMSAHARSGAHAGAAGLFLELRR 84

Query: 75  RNL----VSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEK 126
           R +     S +++++     + ++  R +     R     ++F  A ++T Y   G ++ 
Sbjct: 85  RGVRPDGTSLSTVLSACARLEALELGRCVHGLALRSCSTGNVFVGASLVTMYASCGVVDC 144

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
              +FD + +  + A WNA+V+G        +A+++ + MP++N+VSW +M+ G+    +
Sbjct: 145 LERVFDDV-DSPNVALWNALVSGLVMNHRVGDARRVFNRMPARNVVSWTAMVKGHVSVHD 203

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSG 242
           +  A + F  M  ++ VSW +M+ G V       A + F  +     E   V  V +++ 
Sbjct: 204 VGQAVELFNLMPVKNSVSWCVMIGGLVHCQQFREAVELFNSLMRNGDEVTNVILVKVVNA 263

Query: 243 YAR-----NGRML------------------------------EARRLFDQMPIRNVVAW 267
           YA       GR +                              EAR  FD+M  + V +W
Sbjct: 264 YAGLKSIGGGRCIHGFSVKSGFVHDLIIEASLVAMYCNSLDIDEARLEFDKMDRKQVGSW 323

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
           NA+I  Y+   +I+EA  +F  M  R+ VSW +MI+GY+R  ++ +A  L  +MP KN+ 
Sbjct: 324 NAIIRGYIYAEKIDEAENIFESMTYRDKVSWNSMINGYIRDGRIADATELYSKMPEKNVE 383

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD 387
           A TA++S ++ N ++ +A  +F  +   DV+    ++ GY + G +D+A++LF +M  + 
Sbjct: 384 AATALMSWFIDNGKLGKARDMFYSLPQVDVMSCTALLFGYMKEGYLDDALDLFHRMHKRT 443

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMT 447
            VT+N MIAG+    ++ +A K+F E     +  + +  ++G  QN    DALK++  M 
Sbjct: 444 AVTYNVMIAGFLHQGKVAEAYKLFNE-SPAHDATTCSCFVTGLAQNGLIHDALKLYKKML 502

Query: 448 QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
                   S ++  +S C+H + +  G Q+H   IK G+   L + NSLI++Y+KCG + 
Sbjct: 503 VSNMHTSESVVSSLISCCSHHSMIVHGLQLHATTIKLGFELYLIIQNSLISLYSKCGEMV 562

Query: 508 NAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
            A+ +F      DV++WN+LI GYA N     AI++F+ M +  V PD +TF+GVLSAC+
Sbjct: 563 AAQNIFDQMVKRDVVTWNTLIHGYAFNSLGQNAIEMFKNMKIAQVDPDEITFLGVLSACN 622

Query: 568 HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIW 627
           H+ L++     F+ MT  Y I P + HYACM+DLL R G ++EA  ++K M  +P++ IW
Sbjct: 623 HMSLLEEAKHFFDVMTCDYGIAPNMMHYACMVDLLCRRGMVEEAEGLMKSMPFEPDSAIW 682

Query: 628 GTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGS 687
            +LL +CR+  + KL   A  +L  + P     Y  L N+H    +W  ++ +R  +  S
Sbjct: 683 TSLLSSCRLSGSDKLAEHAASQLIAINPCTKMPYLHLINVHGSMDKWAVIDSLRSQITRS 742

Query: 688 GAQKQPGCSWI 698
             +K+ G SWI
Sbjct: 743 TTEKEVGYSWI 753



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 76/144 (52%), Gaps = 9/144 (6%)

Query: 14  YVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP 73
           Y+  QN  I+   K G +  A  IF QM +++ VT+N++I  YA N    +A ++F+ M 
Sbjct: 544 YLIIQNSLISLYSKCGEMVAAQNIFDQMVKRDVVTWNTLIHGYAFNSLGQNAIEMFKNMK 603

Query: 74  QRNL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGEL 124
              +    +++  +++   H   ++EA+  FD M       P++  +A M+    R+G +
Sbjct: 604 IAQVDPDEITFLGVLSACNHMSLLEEAKHFFDVMTCDYGIAPNMMHYACMVDLLCRRGMV 663

Query: 125 EKARELFDLLPNKEDTACWNAMVA 148
           E+A  L   +P + D+A W ++++
Sbjct: 664 EEAEGLMKSMPFEPDSAIWTSLLS 687


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/619 (34%), Positives = 344/619 (55%), Gaps = 27/619 (4%)

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           DT     +++ YA    + +A  +LD +P  N+ S+++++  ++K  + H A   F  M 
Sbjct: 47  DTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQML 106

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV--------TMLSGYARNGRML 250
            R ++  N +L   V+     SA K  +++     VS          +++  Y +  ++ 
Sbjct: 107 TRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIR 166

Query: 251 EARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYV 306
           +A R+FD+M   +VV+W+A++AAY ++G ++EA RLF EM +     N +SW  MI G+ 
Sbjct: 167 DAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFN 226

Query: 307 RIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH----------D 356
                 EA  +   M  +        IS  +    + +   +   I  H          D
Sbjct: 227 HSGLYSEAVLMFLDMHLRGFEPDGTTISSVL--PAVGDLEDLVMGILIHGYVIKQGLVSD 284

Query: 357 VVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM-- 414
               + +I  Y +C    E   +F QM + D+ + N  I G ++  Q++ ++++F ++  
Sbjct: 285 KCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKD 344

Query: 415 -GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQL 473
            G   N VSW ++I+   QN   ++AL++F  M   G K +  T+ C L AC ++AAL  
Sbjct: 345 QGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMH 404

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           G+  H  +++ G   D++VG++LI MYAKCGRIQ + + F      +++ WN++IAGYA+
Sbjct: 405 GKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAM 464

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVE 593
           +G A EA+++F+ M   G  PD ++F  VLSACS  GL + G   F  M+  Y IE  VE
Sbjct: 465 HGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVE 524

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653
           HYACM+ LLSRAG+L++A+ M++ M + P+A +WG LL +CR+H N+ LG +A EKL EL
Sbjct: 525 HYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFEL 584

Query: 654 EPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPK 713
           EP     Y LLSN++A  G W+EV +VR  M+  G +K PGCSWIEVKN++H  L+GD  
Sbjct: 585 EPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKS 644

Query: 714 QCRTAEICNTLKTLAAQIR 732
             +  +I   L  L+ +++
Sbjct: 645 HPQMTQIIEKLDKLSMEMK 663



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 106/455 (23%), Positives = 208/455 (45%), Gaps = 61/455 (13%)

Query: 5   LKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND 64
           + S+    S  F Q+  +    K  ++ +A ++F +M + + V+++++++AYA+ G V++
Sbjct: 139 IASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDE 198

Query: 65  ARKLFEQMP----QRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMIT 116
           A++LF +M     Q NL+SWN MIAG+ H+    EA  +F  M    F PD  + + ++ 
Sbjct: 199 AKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLP 258

Query: 117 CYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS 173
                 +L     +   +  +    D    +A++  Y K    +E  ++ D M   ++ S
Sbjct: 259 AVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGS 318

Query: 174 WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV 233
            N+ + G ++NG++  + + F  ++++ +                           E NV
Sbjct: 319 CNAFIFGLSRNGQVESSLRLFRQLKDQGM---------------------------ELNV 351

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR-GQIE-----EAARLF 287
           VSW +M++  ++NGR +EA  LF +M I  V   +  I   +   G I      +AA  F
Sbjct: 352 VSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCF 411

Query: 288 IEMPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRM 342
                R  +S      + +ID Y +  ++  +R   D +P KN+    A+I+GY  + + 
Sbjct: 412 ---SLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKA 468

Query: 343 DEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNK-----DIVTWNT 393
            EA +IFD +       D++ +  ++   +Q G  +E    F  M +K      +  +  
Sbjct: 469 KEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYAC 528

Query: 394 MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
           M+   ++  +++ A  +   M    +   W AL+S
Sbjct: 529 MVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLS 563



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 92/181 (50%), Gaps = 21/181 (11%)

Query: 33  EAIKIFSQMSQKNTVTY--NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHN 90
           +A   FS     +T  Y  +++I  YAK GR+  +R  F+ +P +NLV WN++IAGY  +
Sbjct: 406 KAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMH 465

Query: 91  DKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPNK-------ED 139
            K KEA E+FD M R    PD+ S+  +++  ++ G  E+    F+ + +K       E 
Sbjct: 466 GKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEH 525

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNGEMHL----ASKFF 194
            AC   MV   ++ G   +A  ++  MP + +   W ++LS    +  + L    A K F
Sbjct: 526 YAC---MVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLF 582

Query: 195 E 195
           E
Sbjct: 583 E 583



 Score = 45.8 bits (107), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 46/99 (46%)

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
           A+L   RQ H   +K+G  ND  +   L++ YA      +A L+       +V S+++LI
Sbjct: 27  ASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLI 86

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
             ++       A+  F +M+  G+ PD       + AC+
Sbjct: 87  YAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACA 125


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 240/775 (30%), Positives = 395/775 (50%), Gaps = 71/775 (9%)

Query: 25  LGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR--NLVSWNS 82
           L + G+   A  I + +S  ++ T   ++  YA  G  +D  K+F ++  R  ++  WNS
Sbjct: 50  LLRQGKQVHAFLIVNSIS-GDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNS 108

Query: 83  MIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDLLPN-- 136
           +I+ ++ N  + +A   + KM      PD+ ++  ++         +    L D + +  
Sbjct: 109 IISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLG 168

Query: 137 ---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
               E  A  ++++  Y + G  +   KL D +  K+ V WN ML+GY K G +    K 
Sbjct: 169 MDCNEFVA--SSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKG 226

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV--------TMLSGYAR 245
           F  M    +    +  D  + +           ++    VVS V        ++LS Y++
Sbjct: 227 FSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSK 286

Query: 246 NGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTM 301
            GR  +A +LF  M   + V WN MI+ YVQ G +EE+   F EM       + ++++++
Sbjct: 287 CGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSL 346

Query: 302 IDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV 357
           +    +   L+  +++    +      +I   +A+I  Y + + +  A  IF +  + DV
Sbjct: 347 LPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDV 406

Query: 358 VCWNVMIKGYAQCGRMDEAINLFRQMVNKDI----VTWNTM------------------- 394
           V +  MI GY   G   +++ +FR +V   I    +T  ++                   
Sbjct: 407 VVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGF 466

Query: 395 ----------------IAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
                           I  YA+  +M+ A +IFE + KR + VSWN++I+   Q++    
Sbjct: 467 IIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKR-DIVSWNSMITRCAQSDNPSA 525

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
           A+ IF  M   G   D  +++ ALSACA+L +   G+ IH   IK    +D++  ++LI 
Sbjct: 526 AIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLID 585

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME-GVAPDPV 557
           MYAKCG ++ A  +FK     +++SWNS+IA    +G   +++ LF EMV + G+ PD +
Sbjct: 586 MYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQI 645

Query: 558 TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKG 617
           TF+ ++S+C HVG VD G++ F  MTE Y I+P  EHYAC++DL  RAGRL EA+E VK 
Sbjct: 646 TFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKS 705

Query: 618 MKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEV 677
           M   P+AG+WGTLLGACR+H+N++L  +A  KL +L+P  +  Y L+SN HA A  W+ V
Sbjct: 706 MPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESV 765

Query: 678 EKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            KVR  M+    QK PG SWIE+  + H F+SGD     ++ I + L +L  ++R
Sbjct: 766 TKVRSLMKEREVQKIPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELR 820



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/395 (22%), Positives = 170/395 (43%), Gaps = 92/395 (23%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           +N  ++   K GR ++A K+F  MS+ +TVT+N MIS Y ++G + ++   F +M    +
Sbjct: 277 KNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGV 336

Query: 78  ----VSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKARE 129
               ++++S++      + ++  +++   + R     D+F  + +I  Y +   +  A+ 
Sbjct: 337 LPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQN 396

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKK----LLDAMPSKNIVSWNSMLS------ 179
           +F    N  D   + AM++GY   G Y ++ +    L+    S N ++  S+L       
Sbjct: 397 IFSQC-NSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILL 455

Query: 180 -----------------------------GYTKNGEMHLASKFFEAMEERDVVSWNLMLD 210
                                         Y K G M+LA + FE + +RD+VSWN M+ 
Sbjct: 456 ALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMIT 515

Query: 211 GYVELDDLDSAWKFFQK----------------------IPEQ----------------- 231
              + D+  +A   F++                      +P +                 
Sbjct: 516 RCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLAS 575

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
           +V S  T++  YA+ G +  A  +F  M  +N+V+WN++IAA    G+++++  LF EM 
Sbjct: 576 DVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMV 635

Query: 292 ER-----NPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           E+     + +++  +I     +  +DE  R    M
Sbjct: 636 EKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSM 670



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 147/338 (43%), Gaps = 33/338 (9%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM-- 72
           +F  +  I    K   V  A  IFSQ +  + V + +MIS Y  NG   D+ ++F  +  
Sbjct: 375 IFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVK 434

Query: 73  ----PQR-NLVSWNSMIAGYLHNDKVKEAREL----FDKMFRPDLFSWALMITCYTRKGE 123
               P    LVS   +I   L    +K  REL      K F         +I  Y + G 
Sbjct: 435 VKISPNEITLVSILPVIGILL---ALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGR 491

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLS 179
           +  A E+F+ L +K D   WN+M+   A+  N + A  +   M    I    VS ++ LS
Sbjct: 492 MNLAYEIFERL-SKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALS 550

Query: 180 GYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
                            M +     DV S + ++D Y +  +L +A   F+ + E+N+VS
Sbjct: 551 ACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVS 610

Query: 236 WVTMLSGYARNGRMLEARRLFDQM----PIR-NVVAWNAMIAAYVQRGQIEEAARLFIEM 290
           W ++++    +G++ ++  LF +M     IR + + +  +I++    G ++E  R F  M
Sbjct: 611 WNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSM 670

Query: 291 PERNPVS-----WTTMIDGYVRIAKLDEARRLLDQMPY 323
            E   +      +  ++D + R  +L EA   +  MP+
Sbjct: 671 TEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPF 708



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 95/206 (46%), Gaps = 17/206 (8%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
            S V++++  I    K G ++ A+ +F  M +KN V++NS+I+A   +G++ D+  LF +
Sbjct: 574 ASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHE 633

Query: 72  MPQR-----NLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRK 121
           M ++     + +++  +I+   H   V E    F  M      +P    +A ++  + R 
Sbjct: 634 MVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRA 693

Query: 122 GELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK----KLLDAMPSKNIVSWNSM 177
           G L +A E    +P   D   W  ++       N   A+    KL+D  PS +   +  +
Sbjct: 694 GRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNS--GYYVL 751

Query: 178 LSGYTKNG-EMHLASKFFEAMEERDV 202
           +S    N  E    +K    M+ER+V
Sbjct: 752 ISNAHANAREWESVTKVRSLMKEREV 777



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 117/261 (44%), Gaps = 40/261 (15%)

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK--D 515
           L+  L AC++   L+ G+Q+H   I +    D +    ++ MYA CG   +   +F   D
Sbjct: 38  LSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLD 97

Query: 516 ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
                +  WNS+I+ +  NG   +A+  + +M+  GV+PD  TF  ++ AC  +    G 
Sbjct: 98  LRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGI 157

Query: 576 LKLFECMTEV------YAIEPLVEHYA------------------------CMIDLLSRA 605
             L + ++ +      +    L++ Y                          M++  ++ 
Sbjct: 158 DFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKC 217

Query: 606 GRLD---EAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL---SELEPQKTS 659
           G LD   + F +++  +I PNA  +  +L  C     I LG + +  L   S ++ + + 
Sbjct: 218 GALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLG-VQLHGLVVVSGVDFEGSI 276

Query: 660 CYALLSNMHAEAGRWDEVEKV 680
             +LLS M+++ GR+D+  K+
Sbjct: 277 KNSLLS-MYSKCGRFDDASKL 296


>gi|357436395|ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477521|gb|AES58724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 827

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 223/748 (29%), Positives = 386/748 (51%), Gaps = 68/748 (9%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF------R 105
           ++  Y+ N    DA  +F++M  +NL SW +++  +L+     +   LF++        +
Sbjct: 72  LLQMYSINSSFEDAWHMFDKMTLKNLHSWTAVLRLHLNMGLFYKGFMLFEEFLCDGLGEK 131

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKL 162
            D F + +++      G+LE  R++  ++       +    NA++  Y K G+ +EAKK+
Sbjct: 132 LDFFVFPVVLNICCGLGDLELGRQVHGMVLKHGFVTNVYVGNALIDMYGKCGSLDEAKKV 191

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVE-LDD 217
           L+ M  K+ VSWNS+++    NG ++ A    E M     E +VV+W+ ++ G+     D
Sbjct: 192 LEGMTQKDCVSWNSIITACVANGVVYEALDLLENMLLSELEPNVVTWSAVIGGFSSNAYD 251

Query: 218 LDSAWKFFQKI---------------PEQNVVSWV-----------------------TM 239
           ++S   F + +               P  + + W+                        +
Sbjct: 252 VESVELFARMVGAGVAPDARTLASVLPACSRMKWLFVGKELHGYIVRHELFSNGFVANAL 311

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNP 295
           +  Y R G M  A ++F +   +   ++N MI  Y++ G + +A  LF +M     ER+ 
Sbjct: 312 VGMYRRCGDMKSAFKIFSKFARKCAASYNTMIVGYLENGNVGKAKELFYQMEQEGVERDR 371

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFD- 350
           +SW  MI G+V     D+A  L   +  + I   +    ++++G+     + +  +I   
Sbjct: 372 ISWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDSFTLGSILTGFADMTCIRQGKEIHSI 431

Query: 351 ---KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDA 407
              K    +      +++ Y +C  +  A   F ++  +D  TWN +I+GYA+  Q+   
Sbjct: 432 AIVKGLQSNSFVGGALVEMYCKCNDIIAAQMAFDEISERDTSTWNALISGYARCNQIGKI 491

Query: 408 VKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSA 464
            ++ E M   G   N  +WN++++G ++N+ +  A+++F  M     + D  T+   L+A
Sbjct: 492 RELVERMKSDGFEPNVYTWNSILAGLVENKQYDLAMQLFNEMQVSSLRPDIYTVGIILAA 551

Query: 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
           C+ LA +  G+Q+H  +I++GY +D  +G +L+ MYAKCG I++   ++      +++  
Sbjct: 552 CSKLATIHRGKQVHAYSIRAGYDSDAHIGATLVDMYAKCGSIKHCYQVYNKISNPNLVCH 611

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           N+++  YA++G+  E I +F  M+   V PD VTF+ VLS+C H G +  G + F  M E
Sbjct: 612 NAMLTAYAMHGHGEEGIVIFRRMLDSRVRPDHVTFLSVLSSCVHAGSIKIGYECFYLM-E 670

Query: 585 VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
            Y I P ++HY CM+DLLSRAG+LDEA++++K M ++ ++  W  LLG C +H+ + LG 
Sbjct: 671 TYNITPTLKHYTCMVDLLSRAGKLDEAYQLIKNMPMEADSVTWSALLGGCFIHKEVALGE 730

Query: 645 IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQI 704
           IA EKL ELEP  T  Y LL+N++A AGRW ++ K R  M   G QK PGCSWIE ++ +
Sbjct: 731 IAAEKLIELEPSNTGNYVLLANLYASAGRWHDLAKTRELMNDKGMQKSPGCSWIEDRDGV 790

Query: 705 HTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           H FL+ D    R  EI   L  L   IR
Sbjct: 791 HIFLASDKSHQRVEEIYFMLDNLTKFIR 818



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 138/557 (24%), Positives = 264/557 (47%), Gaps = 39/557 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM-- 72
           V+  N  I   GK G ++EA K+   M+QK+ V++NS+I+A   NG V +A  L E M  
Sbjct: 169 VYVGNALIDMYGKCGSLDEAKKVLEGMTQKDCVSWNSIITACVANGVVYEALDLLENMLL 228

Query: 73  --PQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEK 126
              + N+V+W+++I G+  N    E+ ELF +M      PD  + A ++   +R   L  
Sbjct: 229 SELEPNVVTWSAVIGGFSSNAYDVESVELFARMVGAGVAPDARTLASVLPACSRMKWLFV 288

Query: 127 ARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK 183
            +EL   +   E   +    NA+V  Y + G+   A K+      K   S+N+M+ GY +
Sbjct: 289 GKELHGYIVRHELFSNGFVANALVGMYRRCGDMKSAFKIFSKFARKCAASYNTMIVGYLE 348

Query: 184 NGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVS 235
           NG +  A + F  ME    ERD +SWN M+ G+V+    D A   F+ +     E +  +
Sbjct: 349 NGNVGKAKELFYQMEQEGVERDRISWNCMISGHVDNFMFDDALMLFRDLLMEGIEPDSFT 408

Query: 236 WVTMLSGYA-----RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
             ++L+G+A     R G+ + +  +   +   + V   A++  Y +   I  A   F E+
Sbjct: 409 LGSILTGFADMTCIRQGKEIHSIAIVKGLQSNSFVG-GALVEMYCKCNDIIAAQMAFDEI 467

Query: 291 PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY----KNIAAQTAMISGYVQNKRMDEAN 346
            ER+  +W  +I GY R  ++ + R L+++M       N+    ++++G V+NK+ D A 
Sbjct: 468 SERDTSTWNALISGYARCNQIGKIRELVERMKSDGFEPNVYTWNSILAGLVENKQYDLAM 527

Query: 347 QIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINL----FRQMVNKDIVTWNTMIAGY 398
           Q+F+++       D+    +++   ++   +     +     R   + D     T++  Y
Sbjct: 528 QLFNEMQVSSLRPDIYTVGIILAACSKLATIHRGKQVHAYSIRAGYDSDAHIGATLVDMY 587

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           A+   +    +++ ++    N V  NA+++ +  +    + + IF  M     + DH T 
Sbjct: 588 AKCGSIKHCYQVYNKI-SNPNLVCHNAMLTAYAMHGHGEEGIVIFRRMLDSRVRPDHVTF 646

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD- 517
              LS+C H  ++++G +  +L         L     ++ + ++ G++  A  L K+   
Sbjct: 647 LSVLSSCVHAGSIKIGYECFYLMETYNITPTLKHYTCMVDLLSRAGKLDEAYQLIKNMPM 706

Query: 518 PVDVISWNSLIAGYAIN 534
             D ++W++L+ G  I+
Sbjct: 707 EADSVTWSALLGGCFIH 723



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 121/260 (46%), Gaps = 30/260 (11%)

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
           +L LG+Q+H  +IK+G+ N  FV   L+ MY+     ++A  +F      ++ SW +++ 
Sbjct: 46  SLTLGKQLHSHSIKTGFYNHNFVQTKLLQMYSINSSFEDAWHMFDKMTLKNLHSWTAVLR 105

Query: 530 GYAINGNATEAIKLFEEMVMEGVAP--DPVTFIGVLSACSHVGLVDGGLKLFEC------ 581
            +   G   +   LFEE + +G+    D   F  VL+ C  +G ++ G ++         
Sbjct: 106 LHLNMGLFYKGFMLFEEFLCDGLGEKLDFFVFPVVLNICCGLGDLELGRQVHGMVLKHGF 165

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIK 641
           +T VY    L       ID+  + G LDEA ++++GM  K     W +++ AC  +  + 
Sbjct: 166 VTNVYVGNAL-------IDMYGKCGSLDEAKKVLEGMTQKDCVS-WNSIITACVANGVVY 217

Query: 642 LGRIAVEK--LSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG--------AQK 691
                +E   LSELEP   +  A++    + A   + VE +   M G+G        A  
Sbjct: 218 EALDLLENMLLSELEPNVVTWSAVIGGFSSNAYDVESVE-LFARMVGAGVAPDARTLASV 276

Query: 692 QPGCS---WIEVKNQIHTFL 708
            P CS   W+ V  ++H ++
Sbjct: 277 LPACSRMKWLFVGKELHGYI 296


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/622 (34%), Positives = 341/622 (54%), Gaps = 59/622 (9%)

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
           N+++S Y + G +  A + F+ +  R+  S+N +L  Y  L   D A   F+ IP+ +  
Sbjct: 56  NTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQC 115

Query: 235 SWVTMLSGYARNGR--MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAAR------- 285
           S+  +++  AR+GR    +A R    M   + V      A+ +     E+ +R       
Sbjct: 116 SYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHG 175

Query: 286 LFIEMPERNPVS-WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDE 344
           L    P  + V   + ++D Y +  + ++ARR+ D MP +N+ +  ++I+ Y QN  + E
Sbjct: 176 LVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGE 235

Query: 345 ANQIF---------------------------DKIGTH-------------DVVCWNVMI 364
           A  +F                           D+ G               D+V  N ++
Sbjct: 236 ALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALV 295

Query: 365 KGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
             YA+CGR  EA  +F  M ++ IV+  +++ GYA+   ++DA  +F +M ++ N ++WN
Sbjct: 296 DMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEK-NVIAWN 354

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
            LI+ + QN    +A+++FV + ++     H T    L+AC ++A LQLG+Q H   +K 
Sbjct: 355 VLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKE 414

Query: 485 GYV------NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNAT 538
           G+       +D+FVGNSL+ MY K G I +   +F+     D +SWN++I GYA NG A 
Sbjct: 415 GFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAK 474

Query: 539 EAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACM 598
           +A+ LFE M+     PD VT IGVLSAC H GLVD G + F  MTE + I P  +HY CM
Sbjct: 475 DALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCM 534

Query: 599 IDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKT 658
           +DLL RAG L EA E++  M ++P++ +W +LLGACR+H+N++LG     +L EL+PQ +
Sbjct: 535 VDLLGRAGHLKEAEELINDMPMEPDSVLWASLLGACRLHKNVELGEWTAGRLFELDPQNS 594

Query: 659 SCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQ-CRT 717
             Y LLSNM+AE G+W EV +VR SM+  G  KQPGCSWIE+  +++ FL+ D +  CR 
Sbjct: 595 GPYVLLSNMYAEMGKWAEVFRVRRSMKDRGVSKQPGCSWIEIGRKMNVFLARDKRHPCRN 654

Query: 718 AEICNTLKTLAAQIRNTPLAVI 739
            EI NTL+ +  ++  T +  I
Sbjct: 655 -EIHNTLRIIQMEMGRTSIDEI 675



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/467 (26%), Positives = 231/467 (49%), Gaps = 67/467 (14%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            F  N  ++   + GR+ +A ++F ++  +NT +YN+++SAYA+ GR ++AR LFE +P 
Sbjct: 52  TFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYARLGRPDEARALFEAIPD 111

Query: 75  RNLVSWNSMIAGYLHNDK--VKEARELFDKMFRPDL----FSWALMITCYTRKGELEKAR 128
            +  S+N+++A    + +    +A      M   D     +S+A  ++    + +     
Sbjct: 112 PDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGE 171

Query: 129 ELFDLL---PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
           ++  L+   P+ +D    +A+V  YAK     +A+++ DAMP +N+VSWNS+++ Y +NG
Sbjct: 172 QVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNG 231

Query: 186 EMHLASKFFEAM--------------------------EER--------------DVVSW 205
            +  A   F  M                          E R              D+V  
Sbjct: 232 PVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLN 291

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
           N ++D Y +      A   F  +P +++VS  ++L+GYA++  + +A+ +F QM  +NV+
Sbjct: 292 NALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVI 351

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWT--TMIDGYVRIAKLDEARRL---- 317
           AWN +IAAY Q G+ EEA RLF+++   +  P  +T   +++    IA L   ++     
Sbjct: 352 AWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHV 411

Query: 318 ------LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
                  D  P  ++    +++  Y++   +D+  ++F+++   D V WN MI GYAQ G
Sbjct: 412 LKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNG 471

Query: 372 RMDEAINLFRQMV----NKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           R  +A++LF +M+    N D VT   +++       +D+  + F  M
Sbjct: 472 RAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSM 518



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 161/339 (47%), Gaps = 30/339 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +    K GR  EA  IF  M  ++ V+  S+++ YAK+  V DA+ +F QM ++N++
Sbjct: 292 NALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVI 351

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAREL---- 130
           +WN +IA Y  N + +EA  LF ++ R    P  +++  ++       +L+  ++     
Sbjct: 352 AWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHV 411

Query: 131 ------FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
                 FD  P + D    N++V  Y K G+ ++  K+ + M +++ VSWN+M+ GY +N
Sbjct: 412 LKEGFRFDFGP-ESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQN 470

Query: 185 GEMHLASKFFEAM----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS----- 235
           G    A   FE M    E  D V+   +L        +D   ++F  + E + ++     
Sbjct: 471 GRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDH 530

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE----EAARLFIEM 290
           +  M+    R G + EA  L + MP+  + V W +++ A      +E     A RLF E+
Sbjct: 531 YTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWASLLGACRLHKNVELGEWTAGRLF-EL 589

Query: 291 PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
             +N   +  + + Y  + K  E  R+   M  + ++ Q
Sbjct: 590 DPQNSGPYVLLSNMYAEMGKWAEVFRVRRSMKDRGVSKQ 628



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 148/311 (47%), Gaps = 32/311 (10%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           + GR   A  +     + + V  N+++  YAK GR  +AR +F+ MP R++VS  S++ G
Sbjct: 269 REGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTG 328

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT------ 140
           Y  +  V++A+ +F +M   ++ +W ++I  Y + GE E+A  LF  L  K D+      
Sbjct: 329 YAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQL--KRDSIWPTHY 386

Query: 141 -------ACWNAMVAGYAKIGNYNEAKK--LLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
                  AC N       +  + +  K+    D  P  ++   NS++  Y K G +   +
Sbjct: 387 TYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGA 446

Query: 192 KFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQN----VVSWVTMLSGYARNG 247
           K FE M  RD VSWN M+ GY +      A   F+++   N     V+ + +LS    +G
Sbjct: 447 KVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSG 506

Query: 248 RMLEARRLFDQM-------PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWT 299
            + E RR F  M       P R+   +  M+    + G ++EA  L  +MP E + V W 
Sbjct: 507 LVDEGRRYFHSMTEDHGITPSRD--HYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWA 564

Query: 300 TMIDGYVRIAK 310
           +++ G  R+ K
Sbjct: 565 SLL-GACRLHK 574



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 9/146 (6%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S VF  N  +    K+G +++  K+F +M+ ++ V++N+MI  YA+NGR  DA  LFE+M
Sbjct: 424 SDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERM 483

Query: 73  PQRNLVSWNSMIAGYL----HNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGE 123
              N    +  + G L    H+  V E R  F  M       P    +  M+    R G 
Sbjct: 484 LCSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGH 543

Query: 124 LEKARELFDLLPNKEDTACWNAMVAG 149
           L++A EL + +P + D+  W +++  
Sbjct: 544 LKEAEELINDMPMEPDSVLWASLLGA 569



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 4/100 (4%)

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
           L   R  H   +KS    + F+ N+L++ YA+ GR+++A  +F +    +  S+N+L++ 
Sbjct: 33  LSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSA 92

Query: 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
           YA  G   EA  LFE +      PD  ++  V++A +  G
Sbjct: 93  YARLGRPDEARALFEAI----PDPDQCSYNAVVAALARHG 128


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 239/742 (32%), Positives = 384/742 (51%), Gaps = 64/742 (8%)

Query: 50  NSMISAYAKNGRVNDARKLFE-QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL 108
           N+++ AY   G + DAR L    + + N+++ N M+ GY     + +A ELF +M R D+
Sbjct: 67  NTLLHAYLSCGALPDARGLLRGDITEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDV 126

Query: 109 FSWALMITCYTRKGELEKARELF-------DLLPNKEDTACWNAMVAGYAKIGNYNEAKK 161
            SW  +++ Y + G    A E F       D LPN     C  AM +  A +G +  A +
Sbjct: 127 TSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGC--AMKSCGA-LGWHEVALQ 183

Query: 162 LLDAMPSKNIVSWNSMLSG----YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDD 217
           LL  +          + +G    + + G +  ASK F  +E   V   N ML GY +   
Sbjct: 184 LLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYG 243

Query: 218 LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV------------- 264
           +D A + F+ +PE++VVSW  M+S  +++GR  EA  +   M  R V             
Sbjct: 244 VDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTA 303

Query: 265 ------VAW--------------------NAMIAAYVQRGQIEEAARLFIEMPERNPVSW 298
                 + W                    +AM+  Y + G  +EA R+F  + +RN VSW
Sbjct: 304 CAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSW 363

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIA----AQTAMISGYVQNKRMDEANQIFD---K 351
           T +I G+++     E+  L +QM  + +     A   +ISG      M  A Q+     K
Sbjct: 364 TVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLK 423

Query: 352 IG-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKI 410
            G T  VV  N +I  YA+CG +  A ++F  M  +DIV+W  M+  Y+Q+  +  A + 
Sbjct: 424 SGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREF 483

Query: 411 FEEMGKRRNTVSWNALISGFLQNEFHLDALKIF-VLMTQEGKKADHSTLACALSACAHLA 469
           F+ M  R N ++WNA++  ++Q+    D LK++  ++T++    D  T       CA + 
Sbjct: 484 FDGMSTR-NVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMG 542

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
           A +LG QI    +K G + D  V N++ITMY+KCGRI  A  +F      D++SWN++I 
Sbjct: 543 ANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMIT 602

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE 589
           GY+ +G   +AI++F++M+ +G  PD ++++ VLS+CSH GLV  G   F+ +   + + 
Sbjct: 603 GYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVS 662

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649
           P +EH++CM+DLL+RAG L EA  ++  M +KP A +WG LL AC+ H N +L  +A + 
Sbjct: 663 PGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELAELAAKH 722

Query: 650 LSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLS 709
           L +L+   +  Y LL+ ++A+AG+  +  +VR  M   G +K PG SW+EVKN++H F +
Sbjct: 723 LFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYSWMEVKNKVHVFKA 782

Query: 710 GDPKQCRTAEICNTLKTLAAQI 731
            D    +   I   L  L  +I
Sbjct: 783 EDVSHPQVIAIREKLDELMEKI 804



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 109/267 (40%), Gaps = 40/267 (14%)

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC-------------- 503
           LA AL +C    AL   R +H   +  G  + +F+ N+L+  Y  C              
Sbjct: 31  LADALRSCGARGALAGARALHGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDI 90

Query: 504 ------------------GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
                             G + +AE LF      DV SWN+L++GY  +G   +A++ F 
Sbjct: 91  TEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFV 150

Query: 546 EMVMEGVA-PDPVTFIGVLSACSHVGLVDGGLKLFECMTEV-YAIEPLVEHYACMIDLLS 603
            M   G + P+  TF   + +C  +G  +  L+L   +T+  +  +P V     ++D+  
Sbjct: 151 SMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVA--TGIVDMFV 208

Query: 604 RAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYAL 663
           R G +D A +    ++ +P      ++L        +     A+E    +  +    + +
Sbjct: 209 RCGAVDFASKQFSQIE-RPTVFCRNSMLAGYAKSYGVDH---ALELFESMPERDVVSWNM 264

Query: 664 LSNMHAEAGRWDEVEKVRVSMEGSGAQ 690
           + +  +++GR  E   V V M   G +
Sbjct: 265 MVSALSQSGRAREALSVAVDMHNRGVR 291


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 242/807 (29%), Positives = 415/807 (51%), Gaps = 93/807 (11%)

Query: 14   YVFNQNKKITQLGKSGRVEEAIKIFSQMSQ----KNTVTYNSMISAYAKN-GRVNDARKL 68
            Y F    +  Q       +  ++I   +S+     + V  N +IS Y       NDAR +
Sbjct: 646  YAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSV 705

Query: 69   FEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM--------FRPDLFSWALMITCYTR 120
            F+++  RN +SWNS+I+ Y        A +LF  M        F+P+ +++  +IT    
Sbjct: 706  FDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACS 765

Query: 121  KGE-----LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN 175
              +     LE+     +     +D    +A+V+G+A+ G  ++AK + + M  +N+VS N
Sbjct: 766  SVDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMN 825

Query: 176  SMLSGYTKNGEMHLASKFFEAMEERDVV-----SWNLMLDGYVELDDLDSAWKFFQKIPE 230
             ++ G  K  +   A+K F  M  +D+V     S+ ++L  + E   L+   +  +++  
Sbjct: 826  GLMVGLVKQKQGEAAAKVFHEM--KDLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHA 883

Query: 231  QNVVSWVT---------MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIE 281
              + + +          +++ YA++G + +A  +F+ M  ++ V+WN++I+   Q    E
Sbjct: 884  HVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSE 943

Query: 282  EAARLFIEMPERNPV-SWTTMIDGYVRIAKL-----------DEARRLLDQMPYKNIAAQ 329
            +AA  F+ M     + S  T+I      A L           D  +  LD     +++  
Sbjct: 944  DAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDT----DVSVS 999

Query: 330  TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC-GRMDEAINLFRQM----- 383
             A+++ Y +     E  ++F  +  +D V WN +I   +     + +A+  F +M     
Sbjct: 1000 NALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGW 1059

Query: 384  ----------------------------------VNKDIVTWNTMIAGYAQIRQMDDAVK 409
                                              ++ D    N +++ Y +  +M++  K
Sbjct: 1060 GLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEK 1119

Query: 410  IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
            IF  M + R+ VSWN++ISG++ NE    A+ +   M Q+G++ D  T A  LSACA +A
Sbjct: 1120 IFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVLSACASVA 1179

Query: 470  ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
             L+ G ++H   I++   +D+ VG++L+ MY+KCGRI  A   F+     +V SWNS+I+
Sbjct: 1180 TLERGMEVHACGIRACMESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMIS 1239

Query: 530  GYAINGNATEAIKLFEEMVMEGVAPDPVT-FIGVLSACSHVGLVDGGLKLFECMTEVYAI 588
            GYA +G+  +A+KLF  M+++G  PD V   +GVLSACSHVG V+ G + F+ M+EVY +
Sbjct: 1240 GYARHGHGEKALKLFTRMMLDGQPPDHVAPLLGVLSACSHVGFVEEGFEHFKSMSEVYRL 1299

Query: 589  EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA-CRMH-QNIKLGRIA 646
             P VEH++CM+DLL RAG+LDE  + +  M +KPN  IW T+LGA CR + +N +LGR A
Sbjct: 1300 SPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRA 1359

Query: 647  VEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHT 706
             E L ELEPQ    Y LL+NM+A   +W++V K R +M+ +  +K+ GCSW+ +K+ +H 
Sbjct: 1360 AEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARXAMKEAAVKKEAGCSWVTMKDGVHV 1419

Query: 707  FLSGDPKQCRTAEICNTLKTLAAQIRN 733
            F++GD        I + L+ L  ++R+
Sbjct: 1420 FVAGDKLHPEKDXIYDKLRELNRKMRD 1446



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 165/671 (24%), Positives = 312/671 (46%), Gaps = 82/671 (12%)

Query: 45   NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
            N    N++I+ Y + G +  A+KLF++M  RNLV+W  +I+GY  N K  EA   F  M 
Sbjct: 578  NLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMV 637

Query: 105  R----PDLFSWALMITCYTRKGE--LEKARELFDLLPNK---EDTACWNAMVAGYAK-IG 154
            R    P+ +++   +      G    +   ++  L+       D    N +++ Y   + 
Sbjct: 638  RAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLD 697

Query: 155  NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV- 213
            + N+A+ + D +  +N +SWNS++S Y++ G+   A   F +M +++ + ++   + Y  
Sbjct: 698  SANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSM-QKEGLGFSFKPNEYTF 756

Query: 214  ------ELDDLDSAWKFFQKIPE--------QNVVSWVTMLSGYARNGRMLEARRLFDQM 259
                      +D      +++          Q++     ++SG+AR G   +A+ +F+QM
Sbjct: 757  GSLITAACSSVDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQM 816

Query: 260  PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER---NPVSWTTMIDGYVRIAKLDEARR 316
             +RNVV+ N ++   V++ Q E AA++F EM +    N  S+  ++  +   + L+E RR
Sbjct: 817  GVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVVLLSAFSEFSVLEEGRR 876

Query: 317  ---------LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367
                     +   +    +A    +++ Y ++  + +A  +F+ +   D V WN +I G 
Sbjct: 877  KGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGL 936

Query: 368  AQCGRMDEAINLFRQM---------------------------------------VNKDI 388
             Q    ++A   F +M                                       ++ D+
Sbjct: 937  DQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDV 996

Query: 389  VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD-ALKIFVLMT 447
               N ++A YA+     + +K+F  M    + VSWN++I     +E  +  A+K F+ M 
Sbjct: 997  SVSNALLALYAETGCFTECLKVFSLM-PEYDQVSWNSVIGALSDSEASVSQAVKYFLEMM 1055

Query: 448  QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
            + G      T    LSA + L+  ++  QIH L +K    +D  +GN+L++ Y KCG + 
Sbjct: 1056 RGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMN 1115

Query: 508  NAELLF-KDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
              E +F + ++  D +SWNS+I+GY  N    +A+ L   M+ +G   D  TF  VLSAC
Sbjct: 1116 ECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVLSAC 1175

Query: 567  SHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGI 626
            + V  ++ G+++  C      +E  V   + ++D+ S+ GR+D A    + M ++ N   
Sbjct: 1176 ASVATLERGMEVHACGIRA-CMESDVVVGSALVDMYSKCGRIDYASRFFELMPLR-NVYS 1233

Query: 627  WGTLLGACRMH 637
            W +++     H
Sbjct: 1234 WNSMISGYARH 1244



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 145/539 (26%), Positives = 260/539 (48%), Gaps = 52/539 (9%)

Query: 79   SWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLL 134
            ++ S+I  Y  +   +EAREL  +     F  +LF    +I  Y R G+L  A++LFD +
Sbjct: 546  TFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEM 605

Query: 135  PNKEDTACWNAMVAGYAKIGNYNEA----KKLLDAMPSKNIVSWNSMLSGYTKNGE---- 186
             N+ +   W  +++GY + G  +EA    + ++ A    N  ++ S L    ++G     
Sbjct: 606  SNR-NLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCK 664

Query: 187  --MHLASKFFEAMEERDVVSWNLMLDGYVE-LDDLDSAWKFFQKIPEQNVVSWVTMLSGY 243
              + +     +     DVV  N+++  Y   LD  + A   F +I  +N +SW +++S Y
Sbjct: 665  LGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVY 724

Query: 244  ARNGRMLEARRLFDQMPIR--------NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
            +R G  + A  LF  M           N   + ++I A      ++    +  +M  R  
Sbjct: 725  SRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACS--SVDFGLCVLEQMLARVE 782

Query: 296  VS--------WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347
             S         + ++ G+ R    D+A+ + +QM  +N+ +   ++ G V+ K+ + A +
Sbjct: 783  KSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAK 842

Query: 348  IFDKIGTHDVVCWN-----VMIKGYAQCGRMDEA--------INLFRQMVNKD-IVTWNT 393
            +F ++   D+V  N     V++  +++   ++E          ++ R  +N + +   N 
Sbjct: 843  VFHEM--KDLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNG 900

Query: 394  MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA 453
            ++  YA+   + DA  +FE M + +++VSWN+LISG  QNE   DA + F+ M + G   
Sbjct: 901  LVNMYAKSGAIADACSVFELMVE-KDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMP 959

Query: 454  DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
             + TL   LS+CA L  + LG QIH   +K G   D+ V N+L+ +YA+ G       +F
Sbjct: 960  SNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVF 1019

Query: 514  KDADPVDVISWNSLIAGYAIN-GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
                  D +SWNS+I   + +  + ++A+K F EM+  G     VTFI +LSA S + L
Sbjct: 1020 SLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLSL 1078



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 194/408 (47%), Gaps = 36/408 (8%)

Query: 10   NKGSYV-----FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND 64
            N  SYV     F++   + +  + GR   A  I + ++       N +++ YAK+G + D
Sbjct: 854  NSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIAD 913

Query: 65   ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTR 120
            A  +FE M +++ VSWNS+I+G   N+  ++A E F +M R    P  F+    ++    
Sbjct: 914  ACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCAS 973

Query: 121  KGELEKARELF-DLLPNKEDT--ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSM 177
             G +    ++  D L    DT  +  NA++A YA+ G + E  K+   MP  + VSWNS+
Sbjct: 974  LGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSV 1033

Query: 178  LSGYTKN-GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQN--VV 234
            +   + +   +  A K+F  M       W L    ++ +    S+    +   + +  V+
Sbjct: 1034 IGALSDSEASVSQAVKYFLEMMRG---GWGLSRVTFINILSAVSSLSLHEVSHQIHALVL 1090

Query: 235  SWV---------TMLSGYARNGRMLEARRLFDQMP-IRNVVAWNAMIAAYVQRGQIEEAA 284
             +           +LS Y + G M E  ++F +M   R+ V+WN+MI+ Y+    + +A 
Sbjct: 1091 KYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAM 1150

Query: 285  RLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGY 336
             L   M ++    +  ++ T++     +A L+    +    +      ++   +A++  Y
Sbjct: 1151 DLVWFMMQKGQRLDSFTFATVLSACASVATLERGMEVHACGIRACMESDVVVGSALVDMY 1210

Query: 337  VQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
             +  R+D A++ F+ +   +V  WN MI GYA+ G  ++A+ LF +M+
Sbjct: 1211 SKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMM 1258


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 220/641 (34%), Positives = 348/641 (54%), Gaps = 65/641 (10%)

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           F  ++F    +I  Y +   L+ AR+LFD +P + +T  WN++++   K G  +EA +L 
Sbjct: 46  FSMEIFIQNRLIDVYGKCDCLDDARKLFDRMPQR-NTFTWNSLISVLTKSGFLDEAARLF 104

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV----SWNLMLDGYVELDDLD 219
            +MP  +  SWNSM+SG+ ++     + ++F  M   D +    S+   L     L DL+
Sbjct: 105 GSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLN 164

Query: 220 SAWKFFQKIPEQNVVSWVTMLSG----YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
              +    + +    + V M S     Y++ G +  A  +F  M  RN+V WN++I  Y 
Sbjct: 165 MGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYE 224

Query: 276 QRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
           Q G   EA  +F+ M     E + V+  +++     +  L E  ++              
Sbjct: 225 QNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQI-------------- 270

Query: 332 MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTW 391
                  + R+ + N+  D     D+V  N ++  YA+C +++EA  +F +M  +++V+ 
Sbjct: 271 -------HARVVKTNKFRD-----DLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSE 318

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
            +M++GYA+   +  A  +F +M  +RN VSWNALI+G+ QN  + +AL++F L+ +E  
Sbjct: 319 TSMVSGYARAASVKAARFMFSKM-TQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESI 377

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL 511
              H T    L +                        D+FVGNSLI MY KCG I++   
Sbjct: 378 WPTHYTFGNLLKS------------------------DIFVGNSLIDMYMKCGSIEDGSR 413

Query: 512 LFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
           +F+     D +SWN++I GYA NG   EA+++F +M++ G  PD VT IGVL ACSH GL
Sbjct: 414 VFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGL 473

Query: 572 VDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           V+ G   F  M E + + PL +HY CM+DLL RAG L+EA  +++ M + P+A +WG+LL
Sbjct: 474 VEEGRHYFFSMEE-HGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLL 532

Query: 632 GACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQK 691
            AC++H NI++G+ A EKL E++P  +  Y LLSNM+AE GRW +V +VR  M   G  K
Sbjct: 533 AACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTK 592

Query: 692 QPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           QPGCSWIEV++++H FL  D       +I + LK L  Q++
Sbjct: 593 QPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQMK 633



 Score =  193 bits (491), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 134/489 (27%), Positives = 236/489 (48%), Gaps = 78/489 (15%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F QN+ I   GK   +++A K+F +M Q+NT T+NS+IS   K+G +++A +LF  MP+
Sbjct: 50  IFIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPE 109

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL----FSWALMITCYTRKGELEKAREL 130
            +  SWNSM++G+  +D+ +E+ E F KM R D     +S+   ++      +L    ++
Sbjct: 110 PDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQV 169

Query: 131 FDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
             L+       D    +A++  Y+K G+   A+++   M  +N+V+WNS+++ Y +NG  
Sbjct: 170 HALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPA 229

Query: 188 HLASKFFEAMEER----------------------------------------DVVSWNL 207
             A + F  M +                                         D+V  N 
Sbjct: 230 SEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNA 289

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
           ++D Y +   ++ A + F ++  +NVVS  +M+SGYAR   +  AR +F +M  RNVV+W
Sbjct: 290 LVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSW 349

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERN--PVSWT-------------TMIDGYVRIAKLD 312
           NA+IA Y Q G+ EEA RLF  +   +  P  +T             ++ID Y++   ++
Sbjct: 350 NALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLKSDIFVGNSLIDMYMKCGSIE 409

Query: 313 EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWN-----VMIKGY 367
           +  R+ ++M  ++  +  A+I GY QN    EA QIF K+    +VC        MI   
Sbjct: 410 DGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKM----LVCGEKPDHVTMIGVL 465

Query: 368 AQC---GRMDEAINLFRQMVNKDIVT----WNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
             C   G ++E  + F  M    ++     +  M+    +   +++A  + E M    + 
Sbjct: 466 CACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDA 525

Query: 421 VSWNALISG 429
           V W +L++ 
Sbjct: 526 VVWGSLLAA 534



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 109/246 (44%), Gaps = 49/246 (19%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F  N  I    K G +E+  ++F +M +++ V++N++I  YA+NG   +A ++F +M
Sbjct: 390 SDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKM 449

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF- 131
                     ++ G                  +PD  +   ++   +  G +E+ R  F 
Sbjct: 450 ----------LVCGE-----------------KPDHVTMIGVLCACSHAGLVEEGRHYFF 482

Query: 132 -----DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNG 185
                 L+P K+   C   MV    + G  NEAK L++AMP + + V W S+L+    +G
Sbjct: 483 SMEEHGLIPLKDHYTC---MVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHG 539

Query: 186 EMHLASKFFEAMEERDVVSWN-----LMLDGYVEL---DDLDSAWKFF--QKIPEQNVVS 235
            + +     E + E D   WN     L+ + Y EL    D+    K    Q + +Q   S
Sbjct: 540 NIEMGKHAAEKLLEID--PWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCS 597

Query: 236 WVTMLS 241
           W+ + S
Sbjct: 598 WIEVES 603



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 91/215 (42%), Gaps = 45/215 (20%)

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC---------- 503
           + S  A  L +C    + +  R +H   + + +  ++F+ N LI +Y KC          
Sbjct: 14  NSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLF 73

Query: 504 ---------------------GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIK 542
                                G +  A  LF      D  SWNS+++G+A +    E+++
Sbjct: 74  DRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLE 133

Query: 543 LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHY------A 596
            F +M  E    +  +F   LSAC+  GL+D  +      T+V+A+     +       +
Sbjct: 134 YFVKMHREDFLLNEYSFGSALSACA--GLMDLNMG-----TQVHALVSKSRYSTDVYMGS 186

Query: 597 CMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
            +ID+ S+ G +  A E+  GM I+ N   W +L+
Sbjct: 187 ALIDMYSKCGSVACAEEVFSGM-IERNLVTWNSLI 220


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 233/758 (30%), Positives = 393/758 (51%), Gaps = 65/758 (8%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKE 95
           +I  Q  + +TV  N +I  Y++NG V+ AR++F+ +  ++  SW +MI+G   N+   E
Sbjct: 212 RILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAE 271

Query: 96  ARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVA 148
           A  LF  M+     P  ++++ +++   +   LE   +L  L   L    DT   NA+V+
Sbjct: 272 AIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVS 331

Query: 149 GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVS 204
            Y  +GN   A+ +   M  ++ V++N++++G ++ G    A + F+ M     E D  +
Sbjct: 332 LYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNT 391

Query: 205 WNLML-----DGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM 259
              ++     DG +       A+         N +    +L+ YA+   +  A   F + 
Sbjct: 392 LASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEG-ALLNLYAKCADIETALDYFLET 450

Query: 260 PIRNVVAWNAMIAAYVQRGQIEEAARLF----IEMPERNPVSWTTMIDGYVRIAKLDEAR 315
            + NVV WN M+ AY     +  + R+F    IE    N  ++ +++   +R+  L+   
Sbjct: 451 EVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGE 510

Query: 316 RLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
           ++  Q+   N        + +I  Y +  ++D A  I  +    DVV W  MI GY Q  
Sbjct: 511 QIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYN 570

Query: 372 RMDEAINLFRQMVNK---------------------------------------DIVTWN 392
             D+A+  FRQM+++                                       D+   N
Sbjct: 571 FDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQN 630

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
            ++  Y++  +++++   FE+     N ++WNAL+SGF Q+  + +AL++FV M +EG  
Sbjct: 631 ALVTLYSRCGKIEESYLAFEQTEAGDN-IAWNALVSGFQQSGNNEEALRVFVRMNREGID 689

Query: 453 ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512
            ++ T   A+ A +  A ++ G+Q+H +  K+GY ++  V N+LI+MYAKCG I +AE  
Sbjct: 690 NNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQ 749

Query: 513 FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
           F +    + +SWN++I  Y+ +G  +EA+  F++M+   V P+ VT +GVLSACSH+GLV
Sbjct: 750 FLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLV 809

Query: 573 DGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLG 632
           D G+  FE M   Y + P  EHY C++D+L+RAG L  A E ++ M IKP+A +W TLL 
Sbjct: 810 DKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLS 869

Query: 633 ACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQ 692
           AC +H+N+++G  A   L ELEP+ ++ Y LLSN++A + +WD  +  R  M+  G +K+
Sbjct: 870 ACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKE 929

Query: 693 PGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQ 730
           PG SWIEVKN IH+F  GD       EI    + L  +
Sbjct: 930 PGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKR 967



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 105/429 (24%), Positives = 195/429 (45%), Gaps = 66/429 (15%)

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN-------- 294
           Y   G +  A ++FD+MP R +  WN MI     R  I E   LF+ M   N        
Sbjct: 130 YLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTF 189

Query: 295 --------------------------------PVSWTTMIDGYVRIAKLDEARRLLDQMP 322
                                            V    +ID Y R   +D ARR+ D + 
Sbjct: 190 SGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLR 249

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA------QCGRMDEA 376
            K+ ++  AMISG  +N+   EA ++F      D+    +M   YA       C ++ E+
Sbjct: 250 LKDHSSWVAMISGLSKNECEAEAIRLF-----CDMYVLGIMPTPYAFSSVLSACKKI-ES 303

Query: 377 INLFRQM--------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
           + +  Q+         + D    N +++ Y  +  +  A  IF  M + R+ V++N LI+
Sbjct: 304 LEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQ-RDAVTYNTLIN 362

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
           G  Q  +   A+++F  M  +G + D +TLA  + AC+    L  G+Q+H    K G+ +
Sbjct: 363 GLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFAS 422

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           +  +  +L+ +YAKC  I+ A   F + +  +V+ WN ++  Y +  +   + ++F +M 
Sbjct: 423 NNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQ 482

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYAC--MIDLLSRAG 606
           +E + P+  T+  +L  C  +G ++ G ++    +++      +  Y C  +ID+ ++ G
Sbjct: 483 IEEIVPNQYTYPSILKTCIRLGDLELGEQIH---SQIIKTNFQLNAYVCSVLIDMYAKLG 539

Query: 607 RLDEAFEMV 615
           +LD A++++
Sbjct: 540 KLDTAWDIL 548



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 114/262 (43%), Gaps = 35/262 (13%)

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC- 465
           A K+F+EM   R   +WN +I          +   +FV M  E    +  T +  L AC 
Sbjct: 139 AFKVFDEM-PERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACR 197

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
               A  +  QIH   +  G  +   V N LI +Y++ G +  A  +F      D  SW 
Sbjct: 198 GGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWV 257

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM--- 582
           ++I+G + N    EAI+LF +M + G+ P P  F  VLSAC  +  ++ G +L   +   
Sbjct: 258 AMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKL 317

Query: 583 ---TEVYAIEPLV------------EH------------YACMIDLLSRAGRLDEAFEMV 615
              ++ Y    LV            EH            Y  +I+ LS+ G  ++A E+ 
Sbjct: 318 GFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELF 377

Query: 616 KGMK---IKPNAGIWGTLLGAC 634
           K M    ++P++    +L+ AC
Sbjct: 378 KRMHLDGLEPDSNTLASLVVAC 399



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 144/316 (45%), Gaps = 38/316 (12%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           QN  +T   + G++EE+   F Q    + + +N+++S + ++G   +A ++F +M +  +
Sbjct: 629 QNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGI 688

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
            + N     +     VK A E                 T   ++G  ++   +       
Sbjct: 689 DNNN-----FTFGSAVKAASE-----------------TANMKQG--KQVHAVITKTGYD 724

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            +T   NA+++ YAK G+ ++A+K    + +KN VSWN++++ Y+K+G    A   F+ M
Sbjct: 725 SETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQM 784

Query: 198 EERDVVSWNLMLDGYV----ELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGR 248
              +V   ++ L G +     +  +D    +F+ +  +  +S     +V ++    R G 
Sbjct: 785 IHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGL 844

Query: 249 MLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTTMIDG 304
           +  A+    +MPI+ + + W  +++A V    +   E AA   +E+   +  ++  + + 
Sbjct: 845 LSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNL 904

Query: 305 YVRIAKLDEARRLLDQ 320
           Y    K D AR L  Q
Sbjct: 905 YAVSKKWD-ARDLTRQ 919



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 13/182 (7%)

Query: 450 GKKADHSTLACALSACAHL-AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
           G + +H TL   L  C     +L  GR++H   +K G  ++  +   L   Y   G +  
Sbjct: 79  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 138

Query: 509 AELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
           A  +F +     + +WN +I   A      E   LF  MV E V P+  TF GVL AC  
Sbjct: 139 AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACR- 197

Query: 569 VGLVDGGLKLFECMTEVYA---IEPLVEHYAC---MIDLLSRAGRLDEAFEMVKGMKIKP 622
                GG   F+ + +++A    + L +       +IDL SR G +D A  +  G+++K 
Sbjct: 198 -----GGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKD 252

Query: 623 NA 624
           ++
Sbjct: 253 HS 254


>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Glycine max]
          Length = 916

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 249/767 (32%), Positives = 389/767 (50%), Gaps = 90/767 (11%)

Query: 29  GRVEEAIKIFSQMSQ--KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           G++++A ++F QM    +N V +N MIS +AK     +A   F QM +  + S  S +A 
Sbjct: 163 GKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLAS 222

Query: 87  YL---------------HNDKVKE------------------------ARELFDKMFRPD 107
            L               H   +K+                        AR++FD + + +
Sbjct: 223 VLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQKN 282

Query: 108 LFSWALMITCYTRKGELEKARELF-DLLPN--KEDTACWNAMVAGYAKIGNYNEAKKLLD 164
           +  W  M+  Y++ G L    ELF D++      D   + ++++  A        ++L  
Sbjct: 283 MIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHS 342

Query: 165 AMPSK----NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
           A+  K    N+   N+++  Y K G +  A K FE M  RD +SWN ++ GYV+ +    
Sbjct: 343 AIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAG 402

Query: 221 AWKFFQK------IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-----NVVAWNA 269
           A+  F++      +P++  VS  ++LS    N ++LEA + F  + ++     N+ A ++
Sbjct: 403 AFSLFRRMILDGIVPDE--VSLASILSACG-NIKVLEAGQQFHCLSVKLGLETNLFAGSS 459

Query: 270 MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
           +I  Y + G I++A + +  MPER+ VS   +I GY  +    E+  LL +M    +   
Sbjct: 460 LIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGYA-LKNTKESINLLHEMQILGLKPS 518

Query: 330 TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC--GRMDEAINLFRQMVNKD 387
               +  +                    VC     KG A+   G       + R ++   
Sbjct: 519 EITFASLID-------------------VC-----KGSAKVILGLQIHCAIVKRGLLCGS 554

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMT 447
                +++  Y   +++ DA  +F E    ++ V W ALISG +QNE    AL ++  M 
Sbjct: 555 EFLGTSLLGMYMDSQRLADANILFSEFSSLKSIVMWTALISGHIQNECSDVALNLYREMR 614

Query: 448 QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
                 D +T    L ACA L++L  GR+IH L   +G+  D    ++L+ MYAKCG ++
Sbjct: 615 DNNISPDQATFVTVLQACALLSSLHDGREIHSLIFHTGFDLDELTSSALVDMYAKCGDVK 674

Query: 508 NAELLFKD-ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
           ++  +F++ A   DVISWNS+I G+A NG A  A+K+F+EM    + PD VTF+GVL+AC
Sbjct: 675 SSVQVFEELATKKDVISWNSMIVGFAKNGYAKCALKVFDEMTQSCITPDDVTFLGVLTAC 734

Query: 567 SHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGI 626
           SH G V  G ++F+ M   Y IEP V+HYACM+DLL R G L EA E +  ++++PNA I
Sbjct: 735 SHAGWVYEGRQIFDVMVNYYGIEPRVDHYACMVDLLGRWGFLKEAEEFIDKLEVEPNAMI 794

Query: 627 WGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEG 686
           W  LLGACR+H + K G+ A +KL ELEPQ +S Y LLSNM+A +G WDE   +R +M  
Sbjct: 795 WANLLGACRIHGDEKRGQRAAKKLIELEPQSSSPYVLLSNMYAASGNWDEARSLRRTMIK 854

Query: 687 SGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
              QK PGCSWI V  + + F++GD       EI   LK L A I++
Sbjct: 855 KDIQKIPGCSWIVVGQETNLFVAGDISHSSYDEISKALKHLTALIKD 901



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 155/559 (27%), Positives = 255/559 (45%), Gaps = 93/559 (16%)

Query: 80  WNSMIAGYLH--NDKVKEARELF-DKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN 136
           WN  + G  H  +++V +    F +    PD F++A+ ++   +   L   R +   +  
Sbjct: 16  WNWRVQGTKHYSSERVLQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGRAVHSCVIK 75

Query: 137 K--EDTA-CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
              E T+ C  A++  YAK  +   A+ +  + P  ++                      
Sbjct: 76  SGLESTSFCQGALIHLYAKCNSLTCARTIFASAPFPHL---------------------- 113

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK-----IPEQNVVSWVTMLSGYARNGR 248
                    VSW  ++ GYV+      A   F K     +P+Q  V+ VT+L+ Y   G+
Sbjct: 114 -------HTVSWTALISGYVQAGLPHEALHIFDKMRNSAVPDQ--VALVTVLNAYISLGK 164

Query: 249 MLEARRLFDQMPI--RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS----WTTMI 302
           + +A +LF QMPI  RNVVAWN MI+ + +    EEA   F +M +    S      +++
Sbjct: 165 LDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASVL 224

Query: 303 DGYVRIAKLDEA----RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV 358
                +A L+         + Q    +I   +++I+ Y + +  D+A Q+FD I   +++
Sbjct: 225 SAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMI 284

Query: 359 CWNVMIKGYAQCGRMDEAINLFRQMV----NKDIVTW----------------------- 391
            WN M+  Y+Q G +   + LF  M+    + D  T+                       
Sbjct: 285 VWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSAI 344

Query: 392 ------------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDA 439
                       N +I  YA+   + +A K FE M   R+ +SWNA+I G++Q E    A
Sbjct: 345 IKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHM-TYRDHISWNAIIVGYVQEEVEAGA 403

Query: 440 LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
             +F  M  +G   D  +LA  LSAC ++  L+ G+Q H L++K G   +LF G+SLI M
Sbjct: 404 FSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLETNLFAGSSLIDM 463

Query: 500 YAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTF 559
           Y+KCG I++A   +       V+S N+LIAGYA+  N  E+I L  EM + G+ P  +TF
Sbjct: 464 YSKCGDIKDAHKTYSSMPERSVVSVNALIAGYALK-NTKESINLLHEMQILGLKPSEITF 522

Query: 560 IGVLSACSHVGLVDGGLKL 578
             ++  C     V  GL++
Sbjct: 523 ASLIDVCKGSAKVILGLQI 541



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/408 (29%), Positives = 209/408 (51%), Gaps = 21/408 (5%)

Query: 243 YARNGRMLEARRLFDQMPIRNV--VAWNAMIAAYVQRGQIEEAARLFIEMPER---NPVS 297
           YA+   +  AR +F   P  ++  V+W A+I+ YVQ G   EA  +F +M      + V+
Sbjct: 92  YAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLPHEALHIFDKMRNSAVPDQVA 151

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPY--KNIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
             T+++ Y+ + KLD+A +L  QMP   +N+ A   MISG+ +    +EA   F ++  H
Sbjct: 152 LVTVLNAYISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKH 211

Query: 356 DV----VCWNVMIKGYAQCGRMDEAI----NLFRQMVNKDIVTWNTMIAGYAQIRQMDDA 407
            V         ++   A    ++  +    +  +Q     I   +++I  Y + +  DDA
Sbjct: 212 GVKSSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDA 271

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
            ++F+ + ++ N + WNA++  + QN F  + +++F+ M   G   D  T    LS CA 
Sbjct: 272 RQVFDAISQK-NMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCAC 330

Query: 468 LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSL 527
              L++GRQ+H   IK  + ++LFV N+LI MYAK G ++ A   F+     D ISWN++
Sbjct: 331 FEYLEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAI 390

Query: 528 IAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYA 587
           I GY        A  LF  M+++G+ PD V+   +LSAC ++ +++ G + F C++    
Sbjct: 391 IVGYVQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAG-QQFHCLSVKLG 449

Query: 588 IEPLVEHYACMIDLLSRAGRLDEAFEMVKGMK----IKPNAGIWGTLL 631
           +E  +   + +ID+ S+ G + +A +    M     +  NA I G  L
Sbjct: 450 LETNLFAGSSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGYAL 497



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 155/653 (23%), Positives = 289/653 (44%), Gaps = 74/653 (11%)

Query: 48  TYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN----SMIAGYLHNDKVKEARELFDKM 103
           T+   +SA AK   ++  R +   + +  L S +    ++I  Y   + +  AR +F   
Sbjct: 49  TFAVTLSACAKLQNLHLGRAVHSCVIKSGLESTSFCQGALIHLYAKCNSLTCARTIFASA 108

Query: 104 FRPDL--FSWALMITCYTRKGELEKARELFDLLPNK--EDTACWNAMVAGYAKIGNYNEA 159
             P L   SW  +I+ Y + G   +A  +FD + N    D      ++  Y  +G  ++A
Sbjct: 109 PFPHLHTVSWTALISGYVQAGLPHEALHIFDKMRNSAVPDQVALVTVLNAYISLGKLDDA 168

Query: 160 KKLLDAMPS--KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS----WNLMLDGYV 213
            +L   MP   +N+V+WN M+SG+ K      A  FF  M +  V S       +L    
Sbjct: 169 CQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIA 228

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNVVAWNA 269
            L  L+          +Q   S +    ++++ Y +     +AR++FD +  +N++ WNA
Sbjct: 229 SLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNA 288

Query: 270 MIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK- 324
           M+  Y Q G +     LF++M       +  ++T+++        L+  R+L   +  K 
Sbjct: 289 MLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKR 348

Query: 325 ---NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
              N+    A+I  Y +   + EA + F+ +   D + WN +I GY Q      A +LFR
Sbjct: 349 FTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFR 408

Query: 382 QMVNKDIV---------------------------------------TWNTMIAGYAQIR 402
           +M+   IV                                         +++I  Y++  
Sbjct: 409 RMILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLETNLFAGSSLIDMYSKCG 468

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGF-LQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
            + DA K +  M   R+ VS NALI+G+ L+N    +++ +   M   G K    T A  
Sbjct: 469 DIKDAHKTYSSM-PERSVVSVNALIAGYALKNT--KESINLLHEMQILGLKPSEITFASL 525

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYV-NDLFVGNSLITMYAKCGRIQNAELLFKDADPV- 519
           +  C   A + LG QIH   +K G +    F+G SL+ MY    R+ +A +LF +   + 
Sbjct: 526 IDVCKGSAKVILGLQIHCAIVKRGLLCGSEFLGTSLLGMYMDSQRLADANILFSEFSSLK 585

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
            ++ W +LI+G+  N  +  A+ L+ EM    ++PD  TF+ VL AC+ +  +  G ++ 
Sbjct: 586 SIVMWTALISGHIQNECSDVALNLYREMRDNNISPDQATFVTVLQACALLSSLHDGREIH 645

Query: 580 ECMTEV-YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
             +    + ++ L    + ++D+ ++ G +  + ++ + +  K +   W +++
Sbjct: 646 SLIFHTGFDLDELTS--SALVDMYAKCGDVKSSVQVFEELATKKDVISWNSMI 696



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 75/145 (51%), Gaps = 3/145 (2%)

Query: 440 LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
           L+ +      G   D  T A  LSACA L  L LGR +H   IKSG  +  F   +LI +
Sbjct: 32  LQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGRAVHSCVIKSGLESTSFCQGALIHL 91

Query: 500 YAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
           YAKC  +  A  +F  A    +  +SW +LI+GY   G   EA+ +F++M    V PD V
Sbjct: 92  YAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLPHEALHIFDKMRNSAV-PDQV 150

Query: 558 TFIGVLSACSHVGLVDGGLKLFECM 582
             + VL+A   +G +D   +LF+ M
Sbjct: 151 ALVTVLNAYISLGKLDDACQLFQQM 175


>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Vitis vinifera]
          Length = 847

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 230/739 (31%), Positives = 394/739 (53%), Gaps = 44/739 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            F  N+ I    K   ++ + ++F QM +++  T+N+++ AY K   + DA  LF +MP+
Sbjct: 40  TFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPE 99

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKAREL 130
           RN+VSWN++I+    N   ++A  ++ +M    F P  F+ A +++      ++E  R  
Sbjct: 100 RNIVSWNTLISALTRNGFEQKALGVYYRMSREGFVPTHFTLASVLSACGALVDVECGRRC 159

Query: 131 FDL---LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
             +   +    +    NA++  YAK     +A +    +P  N VS+ +M+ G   + ++
Sbjct: 160 HGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQV 219

Query: 188 HLASKFFEAMEER----DVVSWNLMLD----------GYVELDDLDSAWKFFQKIP---- 229
           + A + F  M       D VS + +L           G  + +D+ S+    Q++     
Sbjct: 220 NEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTI 279

Query: 230 ----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ----IE 281
               E ++    ++L  YA+NG M  A  +F  MP  +VV+WN MIA Y Q+ Q    IE
Sbjct: 280 KHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIE 339

Query: 282 EAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKR 341
              R+     E + +++  M+   ++   ++  R++ D M   ++++   ++SGY QN+ 
Sbjct: 340 YLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNEN 399

Query: 342 MDEANQIFDKI---GTH-DVVCWNVMIKGYA-----QCGRMDEAINLFRQMVNKDIVTWN 392
             EA ++F ++     H D     +++   A     + GR   A++  + +   DI   +
Sbjct: 400 HKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQ-KAVFRTDIYLAS 458

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
            +I  Y++  +++ A +IF+ + +  + V WN++++G   N    +A   F  M ++G  
Sbjct: 459 GLIGMYSKCGKVEMAKRIFDRIAEL-DIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMF 517

Query: 453 ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512
               + A  LS CA L++L  GRQ+H    + GY+ND FVG++LI MY+KCG +  A  +
Sbjct: 518 PSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWV 577

Query: 513 FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
           F      + ++WN +I GYA NG   EA+ L+E+M+  G  PD +TF+ VL+ACSH GLV
Sbjct: 578 FDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLV 637

Query: 573 DGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLG 632
           D G+K+F  M + + +EPLV+HY C+ID L RAGRL EA  ++  M  K +  IW  LL 
Sbjct: 638 DTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLS 697

Query: 633 ACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQ 692
           +CR++ ++ L R A E+L  L+PQ ++ Y LL+N+++  GRWD+ + VR  M  +   K 
Sbjct: 698 SCRVYADVSLARRAAEELFHLDPQNSAPYVLLANIYSSLGRWDDAKAVRELMSYNQVVKD 757

Query: 693 PGCSWIEVKNQIHTFLSGD 711
           PG SWIE KN +  F+  D
Sbjct: 758 PGYSWIEHKNGMQAFMVDD 776



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 153/577 (26%), Positives = 270/577 (46%), Gaps = 74/577 (12%)

Query: 112 ALMITCYTRKGELEKARELFDLLPNK--EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK 169
           +L+ TC  +K  L        +L ++  +DT   N ++  YAK    + +++L D MP +
Sbjct: 10  SLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKR 69

Query: 170 NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP 229
           +I +WN++L  Y K  E+  A   F  M ER++VSWN ++           A   + ++ 
Sbjct: 70  DIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYRMS 129

Query: 230 EQNVV-SWVTMLSGYARNGRM--LEARRLFDQMPIR-----NVVAWNAMIAAYVQRGQIE 281
            +  V +  T+ S  +  G +  +E  R    + I+     N+   NA++  Y +   I 
Sbjct: 130 REGFVPTHFTLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIG 189

Query: 282 EAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG------ 335
           +A + F ++PE N VS+T M+ G     +++EA RL   M    I   +  +S       
Sbjct: 190 DAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCS 249

Query: 336 -----------------------------------------------YVQNKRMDEANQI 348
                                                          Y +N  MD A  I
Sbjct: 250 RGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMI 309

Query: 349 FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQM 404
           F  +    VV WNVMI GY Q  +  +AI   ++M       D +T+  M+    +   +
Sbjct: 310 FVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDI 369

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSA 464
           +   ++F+ M    +  SWN ++SG+ QNE H +A+K+F  M       D +TLA  LS+
Sbjct: 370 EAGRQMFDGMSS-PSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSS 428

Query: 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
            A +  L+ GRQ+H ++ K+ +  D+++ + LI MY+KCG+++ A+ +F     +D++ W
Sbjct: 429 LAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCW 488

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF-ECMT 583
           NS++AG ++N    EA   F++M  +G+ P   ++  VLS C+ +  +  G ++  +   
Sbjct: 489 NSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAR 548

Query: 584 EVYAIEPLVEHYACMIDLLSRAGRLDEA---FEMVKG 617
           E Y  +  V   + +ID+ S+ G +D A   F+M+ G
Sbjct: 549 EGYMNDAFVG--SALIDMYSKCGDVDAARWVFDMMLG 583



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 117/307 (38%), Gaps = 81/307 (26%)

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI----------- 506
           LA  L  C    A   G+ IH   ++S   +D F+ N LI  YAKC  I           
Sbjct: 8   LASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMP 67

Query: 507 --------------------QNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEE 546
                               ++A +LF +    +++SWN+LI+    NG   +A+ ++  
Sbjct: 68  KRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYR 127

Query: 547 MVMEGVAPDPVTFIGVLSACS----------------HVGLVDGGLKLFECMTEVYA--- 587
           M  EG  P   T   VLSAC                  +GL D  + +   +  +YA   
Sbjct: 128 MSREGFVPTHFTLASVLSACGALVDVECGRRCHGISIKIGL-DNNIYVGNALLGMYAKCR 186

Query: 588 ------------IEPLVEHYACMIDLLSRAGRLDEAFEMVKGM---KIKPNAGIWGTLLG 632
                        EP    +  M+  L+ + +++EAF + + M   +I  ++    ++LG
Sbjct: 187 CIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLG 246

Query: 633 ACRMHQNIKLGRIAVEKL--SELEPQKTSCYAL-------------LSNMHAEAGRWDEV 677
            C      + G      +  S++  Q+  C  +             L +M+A+ G  D  
Sbjct: 247 VCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSA 306

Query: 678 EKVRVSM 684
           E + V+M
Sbjct: 307 EMIFVNM 313


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 235/744 (31%), Positives = 407/744 (54%), Gaps = 40/744 (5%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I    K G V  A ++F ++S ++ V++ +++S YA+NG   +A +L+ +M +  +V
Sbjct: 81  NLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVV 140

Query: 79  S----WNSMIAGYLHNDKVKEARELFDKMFRPDLFSWAL----MITCYTRKGELEKAREL 130
                 +S+++     +  +  R +  ++++   FS       +I+ Y R      A  +
Sbjct: 141 PTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRV 200

Query: 131 F-DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP----SKNIVSWNSMLSGYTKNG 185
           F D+L    D+  +N +++G+A+ G+ + A  + D M     S + V+  S+L+  +  G
Sbjct: 201 FCDMLYC--DSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVG 258

Query: 186 EM----HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
           ++     L S   +A    D +    +LD YV+  D++ A + F      NVV W  ML 
Sbjct: 259 DLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLV 318

Query: 242 GYARNGRMLEARRLFDQM---PIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERN 294
            Y +   + ++  +F +M    +R N   +  M+      G+I   E+   L I+   ++
Sbjct: 319 AYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQS 378

Query: 295 PVSWT-TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF---- 349
            +  +  +ID Y +   LD+A+R+LD +  K++ + T+MI+GYVQ++   EA + F    
Sbjct: 379 DMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQ 438

Query: 350 ------DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQ 403
                 D IG    +     IK   Q  ++   +  +    + D+  WN ++  YA+   
Sbjct: 439 ACGIWPDNIGLASAISACAGIKAVHQGSQIHARV--YVSGYSADVSIWNGLVYLYARCGI 496

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS 463
             +A   FE + + +  ++WN LISGF Q+  + +ALK+F+ M Q G K +  T   ++S
Sbjct: 497 SKEAFSSFEAI-EHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSIS 555

Query: 464 ACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
           A A+LA ++ G+QIH   IK+GY ++  + N+LI++Y KCG I++A++ F +    + +S
Sbjct: 556 ASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVS 615

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMT 583
           WN++I   + +G   EA+ LF++M  +G+ P  VTF+GVL+ACSHVGLV+ GL  F+ M+
Sbjct: 616 WNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMS 675

Query: 584 EVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLG 643
             + I P  +HYAC++D+L RAG+LD A   V+ M I  ++ +W TLL AC++H+N+++G
Sbjct: 676 NEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIG 735

Query: 644 RIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQ 703
             A + L ELEP  ++ Y LLSN +A  G+W   +++R  M+  G +K+PG SWIEVKN 
Sbjct: 736 EFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKNV 795

Query: 704 IHTFLSGDPKQCRTAEICNTLKTL 727
           +H F  GD       +I N L  L
Sbjct: 796 VHAFFVGDRLHPLADQIYNFLSHL 819



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 156/637 (24%), Positives = 284/637 (44%), Gaps = 82/637 (12%)

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           M  R   S+N  +AG+L  D  ++   LF    R  +   A+   C  R       R  +
Sbjct: 1   MTPRGAASFNRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDFACALRACRGSGRR--W 58

Query: 132 DLLPNKEDTA----------CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
            L+P     A            N ++  YAK G    A+++ + +  ++ VSW ++LSGY
Sbjct: 59  PLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGY 118

Query: 182 TKNGEMHLASKFFEAMEERDVVSWNLMLDGYV---------ELDDLDSAWKFFQKIPEQN 232
            +NG    A + +  M    VV    +L   +         +L  L     + Q    + 
Sbjct: 119 AQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSET 178

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP- 291
            V    ++S Y R      A R+F  M   + V +N +I+ + Q G  + A  +F EM  
Sbjct: 179 FVG-NALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQL 237

Query: 292 ---ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA----AQTAMISGYVQNKRMDE 344
                + V+  +++     +  L + ++L   +    ++     + +++  YV++  ++E
Sbjct: 238 SGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEE 297

Query: 345 ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV-------------------- 384
           A QIFD     +VV WN+M+  Y Q   + ++ ++F +M+                    
Sbjct: 298 ALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTH 357

Query: 385 -------------------NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
                                D+     +I  Y++   +D A +I  +M + ++ VSW +
Sbjct: 358 TGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRIL-DMIEEKDVVSWTS 416

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485
           +I+G++Q+EF  +AL+ F  M   G   D+  LA A+SACA + A+  G QIH     SG
Sbjct: 417 MIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSG 476

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
           Y  D+ + N L+ +YA+CG  + A   F+  +  + I+WN LI+G+A +G   EA+K+F 
Sbjct: 477 YSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFM 536

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV-YAIEPLVEHYACMIDLLSR 604
           +M   G   +  TF+  +SA +++  +  G ++   + +  Y  E  + +   +I L  +
Sbjct: 537 KMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISN--ALISLYGK 594

Query: 605 AGRLDEA----FEMVKGMKIKPNAGIWGTLLGACRMH 637
            G +++A    FEM K  ++      W T++  C  H
Sbjct: 595 CGSIEDAKMDFFEMTKRNEVS-----WNTIITCCSQH 626



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 116/256 (45%), Gaps = 7/256 (2%)

Query: 418 RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAAL-QLGRQ 476
           R   S+N  ++GFL  +     L +F    ++         ACAL AC        L  +
Sbjct: 4   RGAASFNRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDFACALRACRGSGRRWPLVPE 63

Query: 477 IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGN 536
           IH  AI  G      +GN LI +YAK G ++ A  +F++    D +SW ++++GYA NG 
Sbjct: 64  IHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGL 123

Query: 537 ATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVD-GGLKLFECMTEVYAIEPLVEHY 595
             EA++L+ EM   GV P P     +LSAC+   L   G L   +   + +  E  V + 
Sbjct: 124 GEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNA 183

Query: 596 ACMIDLLSRAGRL-DEAF-EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653
              + L  R+ RL D  F +M+    +  N  I G     C  H +  LG     +LS L
Sbjct: 184 LISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGH--AQCG-HGDRALGIFDEMQLSGL 240

Query: 654 EPQKTSCYALLSNMHA 669
            P   +  +LL+   A
Sbjct: 241 SPDSVTIASLLAACSA 256


>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/531 (38%), Positives = 301/531 (56%), Gaps = 10/531 (1%)

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP---IR-NVVAW 267
           +V L  +  A   F   P+  V  W  +  GY  N    E   LF +M    +R N   +
Sbjct: 67  WVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTF 126

Query: 268 NAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
             ++ +  + G   E   +  E+     E N    TT+ID Y     +  A +L   M  
Sbjct: 127 PLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLE 186

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
           +NI A T+MISGY+   R+  A ++FD     DVV WN+M+ GY + G M  A  LF  M
Sbjct: 187 RNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTM 246

Query: 384 VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
             +D ++WNTM+ GYA    ++   ++FEEM   RN  SWN LI G+  N    + L+ F
Sbjct: 247 PYRDTMSWNTMLNGYANNGDVEACEQLFEEM-PERNVFSWNGLIGGYAHNGCFFEVLRCF 305

Query: 444 VLMTQEGKKA-DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
             M  +G    + +TL   LSACA L AL LG+ +H  A   G+   ++VGN+LI MY+K
Sbjct: 306 KRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSK 365

Query: 503 CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
           CG I+NA  +F+  D  D+I+WNS+I G A +G   +A+ LF +M + G  PD +TFIGV
Sbjct: 366 CGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGV 425

Query: 563 LSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKP 622
           L +C+H+GLV+ G   F  M   Y+I P +EHY CM+DL  RAG LD A E VK M ++ 
Sbjct: 426 LCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEA 485

Query: 623 NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRV 682
           +A IW  LLGACR+++NI L  +A++KL  LEP+  + Y LLSN++ + GRW +V ++++
Sbjct: 486 DAVIWAALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKI 545

Query: 683 SMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
            M  +G++K PGCS IEV + +  F S D +  ++ EI   LK L   +R+
Sbjct: 546 LMRDTGSKKLPGCSLIEVNDSVVEFYSLDERHSQSKEIYGVLKGLMKLLRS 596



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 143/546 (26%), Positives = 233/546 (42%), Gaps = 110/546 (20%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKE 95
           +I +   Q N     ++++++    ++  AR LF+  P   +  WN++  GY HN   +E
Sbjct: 47  QIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYRE 106

Query: 96  ARELFDKM----FRPDLFSWALMITCYTRKGELEKARELF------DLLPNKEDTACWNA 145
              LF KM     RP+ F++ L++    + G   +  E+        L  N+        
Sbjct: 107 VVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLID 166

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW 205
           + +G   IG+   A KL   M  +NIV+W SM+SGY     + LA + F+   ERDVV W
Sbjct: 167 VYSGGRAIGS---AYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLW 223

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
           N+M+ GY+E+ D+ +A K F  +P ++ +SW TML+GYA NG +    +LF++MP RNV 
Sbjct: 224 NIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVF 283

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEM-----PERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
           +WN +I  Y   G   E  R F  M        N  +  T++    R+  LD  +     
Sbjct: 284 SWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGK----- 338

Query: 321 MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF 380
             + ++ A T    G                     +   N +I  Y++CG ++ A+ +F
Sbjct: 339 --WVHVYAATIGFKG--------------------SIYVGNALIDMYSKCGLIENAMEVF 376

Query: 381 RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
             M  KD++TWN+MI G A      DA+ +F +M                          
Sbjct: 377 ESMDLKDLITWNSMICGLATHGCGADALTLFHQM-------------------------- 410

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500
           KI       G+K D  T    L +C HL  ++ G                   NS++  Y
Sbjct: 411 KI------NGEKPDGITFIGVLCSCTHLGLVEEGTSYF---------------NSMVNEY 449

Query: 501 AKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
           +   +I++               +  ++  +   G    AI+  + M ME    D V + 
Sbjct: 450 SIAPQIEH---------------YGCMVDLFGRAGLLDRAIEFVKRMPMEA---DAVIWA 491

Query: 561 GVLSAC 566
            +L AC
Sbjct: 492 ALLGAC 497



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 169/345 (48%), Gaps = 21/345 (6%)

Query: 28  SGR-VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
            GR +  A K+F  M ++N V + SMIS Y    RV  AR+LF+  P+R++V WN M++G
Sbjct: 170 GGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSG 229

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
           Y+    +K AR+LFD M   D  SW  M+  Y   G++E   +LF+ +P + +   WN +
Sbjct: 230 YIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPER-NVFSWNGL 288

Query: 147 VAGYAKIGNYNEA-----KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS--KFFEAM-- 197
           + GYA  G + E      + L+D +   N  +  ++LS   + G + L      + A   
Sbjct: 289 IGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIG 348

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFD 257
            +  +   N ++D Y +   +++A + F+ +  +++++W +M+ G A +G   +A  LF 
Sbjct: 349 FKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFH 408

Query: 258 QMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVRI 308
           QM I     + + +  ++ +    G +EE    F  M     ++     +  M+D + R 
Sbjct: 409 QMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRA 468

Query: 309 AKLDEARRLLDQMPYKNIAAQTAMISGYVQ-NKRMDEANQIFDKI 352
             LD A   + +MP +  A   A + G  +  K +D A     K+
Sbjct: 469 GLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKL 513



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 148/310 (47%), Gaps = 21/310 (6%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL 88
           G ++ A K+F  M  ++T+++N+M++ YA NG V    +LFE+MP+RN+ SWN +I GY 
Sbjct: 234 GDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYA 293

Query: 89  HNDKVKEA-----RELFDKMFRPDLFSWALMITCYTRKGELEKARELF---DLLPNKEDT 140
           HN    E      R L D +  P+  +   +++   R G L+  + +      +  K   
Sbjct: 294 HNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSI 353

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM--- 197
              NA++  Y+K G    A ++ ++M  K++++WNSM+ G   +G    A   F  M   
Sbjct: 354 YVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKIN 413

Query: 198 -EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLE 251
            E+ D +++  +L     L  ++    +F  +  +  ++     +  M+  + R G +  
Sbjct: 414 GEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDR 473

Query: 252 ARRLFDQMPIR-NVVAWNAMIAA---YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVR 307
           A     +MP+  + V W A++ A   Y      E A +  I +  +NP ++  + + Y  
Sbjct: 474 AIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGD 533

Query: 308 IAKLDEARRL 317
           + +  +  RL
Sbjct: 534 LGRWKDVARL 543



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 10/151 (6%)

Query: 7   SIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDAR 66
           +IG KGS ++  N  I    K G +E A+++F  M  K+ +T+NSMI   A +G   DA 
Sbjct: 346 TIGFKGS-IYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADAL 404

Query: 67  KLFEQMP----QRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITC 117
            LF QM     + + +++  ++    H   V+E    F+ M       P +  +  M+  
Sbjct: 405 TLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDL 464

Query: 118 YTRKGELEKARELFDLLPNKEDTACWNAMVA 148
           + R G L++A E    +P + D   W A++ 
Sbjct: 465 FGRAGLLDRAIEFVKRMPMEADAVIWAALLG 495



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 88/196 (44%), Gaps = 9/196 (4%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           L +C  +A LQ   ++    I  G+  + +V  +++T +    ++ +A  LF       V
Sbjct: 32  LRSCKTVALLQ---KVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPKV 88

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC 581
             WN++  GY  N    E + LF +M    V P+  TF  VL +C+ +G    G ++  C
Sbjct: 89  ELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEI-HC 147

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIK 641
                 +E        +ID+ S    +  A+++  GM ++ N   W +++    +   + 
Sbjct: 148 EVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGM-LERNIVAWTSMISGYILCNRVA 206

Query: 642 LGRIAVEKLSELEPQK 657
           L R    +L +L P++
Sbjct: 207 LAR----RLFDLAPER 218


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 233/756 (30%), Positives = 392/756 (51%), Gaps = 65/756 (8%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKE 95
           +I  Q  + +TV  N +I  Y++NG V+ AR++F+ +  ++  SW +MI+G   N+   E
Sbjct: 172 RILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAE 231

Query: 96  ARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVA 148
           A  LF  M+     P  ++++ +++   +   LE   +L  L   L    DT   NA+V+
Sbjct: 232 AIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVS 291

Query: 149 GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVS 204
            Y  +GN   A+ +   M  ++ V++N++++G ++ G    A + F+ M     E D  +
Sbjct: 292 LYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNT 351

Query: 205 WNLML-----DGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM 259
              ++     DG +       A+         N +    +L+ YA+   +  A   F + 
Sbjct: 352 LASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEG-ALLNLYAKCADIETALDYFLET 410

Query: 260 PIRNVVAWNAMIAAYVQRGQIEEAARLF----IEMPERNPVSWTTMIDGYVRIAKLDEAR 315
            + NVV WN M+ AY     +  + R+F    IE    N  ++ +++   +R+  L+   
Sbjct: 411 EVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGE 470

Query: 316 RLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
           ++  Q+   N        + +I  Y +  ++D A  I  +    DVV W  MI GY Q  
Sbjct: 471 QIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYN 530

Query: 372 RMDEAINLFRQMVNK---------------------------------------DIVTWN 392
             D+A+  FRQM+++                                       D+   N
Sbjct: 531 FDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQN 590

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
            ++  Y++  +++++   FE+     N ++WNAL+SGF Q+  + +AL++FV M +EG  
Sbjct: 591 ALVTLYSRCGKIEESYLAFEQTEAGDN-IAWNALVSGFQQSGNNEEALRVFVRMNREGID 649

Query: 453 ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512
            ++ T   A+ A +  A ++ G+Q+H +  K+GY ++  V N+LI+MYAKCG I +AE  
Sbjct: 650 NNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQ 709

Query: 513 FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
           F +    + +SWN++I  Y+ +G  +EA+  F++M+   V P+ VT +GVLSACSH+GLV
Sbjct: 710 FLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLV 769

Query: 573 DGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLG 632
           D G+  FE M   Y + P  EHY C++D+L+RAG L  A E ++ M IKP+A +W TLL 
Sbjct: 770 DKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLS 829

Query: 633 ACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQ 692
           AC +H+N+++G  A   L ELEP+ ++ Y LLSN++A + +WD  +  R  M+  G +K+
Sbjct: 830 ACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKE 889

Query: 693 PGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLA 728
           PG SWIEVKN IH+F  GD       EI    + L 
Sbjct: 890 PGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLT 925



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 105/429 (24%), Positives = 195/429 (45%), Gaps = 66/429 (15%)

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN-------- 294
           Y   G +  A ++FD+MP R +  WN MI     R  I E   LF+ M   N        
Sbjct: 90  YLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTF 149

Query: 295 --------------------------------PVSWTTMIDGYVRIAKLDEARRLLDQMP 322
                                            V    +ID Y R   +D ARR+ D + 
Sbjct: 150 SGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLR 209

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA------QCGRMDEA 376
            K+ ++  AMISG  +N+   EA ++F      D+    +M   YA       C ++ E+
Sbjct: 210 LKDHSSWVAMISGLSKNECEAEAIRLF-----CDMYVLGIMPTPYAFSSVLSACKKI-ES 263

Query: 377 INLFRQM--------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
           + +  Q+         + D    N +++ Y  +  +  A  IF  M + R+ V++N LI+
Sbjct: 264 LEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQ-RDAVTYNTLIN 322

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
           G  Q  +   A+++F  M  +G + D +TLA  + AC+    L  G+Q+H    K G+ +
Sbjct: 323 GLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFAS 382

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           +  +  +L+ +YAKC  I+ A   F + +  +V+ WN ++  Y +  +   + ++F +M 
Sbjct: 383 NNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQ 442

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYAC--MIDLLSRAG 606
           +E + P+  T+  +L  C  +G ++ G ++    +++      +  Y C  +ID+ ++ G
Sbjct: 443 IEEIVPNQYTYPSILKTCIRLGDLELGEQIH---SQIIKTNFQLNAYVCSVLIDMYAKLG 499

Query: 607 RLDEAFEMV 615
           +LD A++++
Sbjct: 500 KLDTAWDIL 508



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/262 (27%), Positives = 114/262 (43%), Gaps = 35/262 (13%)

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC- 465
           A K+F+EM   R   +WN +I          +   +FV M  E    +  T +  L AC 
Sbjct: 99  AFKVFDEM-PERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACR 157

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
               A  +  QIH   +  G  +   V N LI +Y++ G +  A  +F      D  SW 
Sbjct: 158 GGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWV 217

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM--- 582
           ++I+G + N    EAI+LF +M + G+ P P  F  VLSAC  +  ++ G +L   +   
Sbjct: 218 AMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKL 277

Query: 583 ---TEVYAIEPLV------------EH------------YACMIDLLSRAGRLDEAFEMV 615
              ++ Y    LV            EH            Y  +I+ LS+ G  ++A E+ 
Sbjct: 278 GFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELF 337

Query: 616 KGMK---IKPNAGIWGTLLGAC 634
           K M    ++P++    +L+ AC
Sbjct: 338 KRMHLDGLEPDSNTLASLVVAC 359



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 144/316 (45%), Gaps = 38/316 (12%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           QN  +T   + G++EE+   F Q    + + +N+++S + ++G   +A ++F +M +  +
Sbjct: 589 QNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGI 648

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
            + N     +     VK A E                 T   ++G  ++   +       
Sbjct: 649 DNNN-----FTFGSAVKAASE-----------------TANMKQG--KQVHAVITKTGYD 684

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            +T   NA+++ YAK G+ ++A+K    + +KN VSWN++++ Y+K+G    A   F+ M
Sbjct: 685 SETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQM 744

Query: 198 EERDVVSWNLMLDGYV----ELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGR 248
              +V   ++ L G +     +  +D    +F+ +  +  +S     +V ++    R G 
Sbjct: 745 IHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGL 804

Query: 249 MLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTTMIDG 304
           +  A+    +MPI+ + + W  +++A V    +   E AA   +E+   +  ++  + + 
Sbjct: 805 LSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNL 864

Query: 305 YVRIAKLDEARRLLDQ 320
           Y    K D AR L  Q
Sbjct: 865 YAVSKKWD-ARDLTRQ 879



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 13/182 (7%)

Query: 450 GKKADHSTLACALSACAHL-AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
           G + +H TL   L  C     +L  GR++H   +K G  ++  +   L   Y   G +  
Sbjct: 39  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 98

Query: 509 AELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
           A  +F +     + +WN +I   A      E   LF  MV E V P+  TF GVL AC  
Sbjct: 99  AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACR- 157

Query: 569 VGLVDGGLKLFECMTEVYA---IEPLVEHYAC---MIDLLSRAGRLDEAFEMVKGMKIKP 622
                GG   F+ + +++A    + L +       +IDL SR G +D A  +  G+++K 
Sbjct: 158 -----GGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKD 212

Query: 623 NA 624
           ++
Sbjct: 213 HS 214


>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/486 (39%), Positives = 287/486 (59%), Gaps = 36/486 (7%)

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRI 308
           M  AR+LFDQ+P  N+  WN+M   Y Q    E    +F EM ERN V+WT+MI+GY+  
Sbjct: 1   MTYARQLFDQIPDPNIALWNSMFRGYAQS---ESYREIFCEMFERNVVAWTSMINGYILS 57

Query: 309 AKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
           A L  ARRL D  P +++     M+SGY++   M EA ++F ++   DV+ WN ++KGYA
Sbjct: 58  ADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYA 117

Query: 369 QCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
             G ++    LF +M  ++I +WN +I GYA                             
Sbjct: 118 TNGNVEALEGLFEEMPERNIFSWNALIGGYA----------------------------- 148

Query: 429 GFLQNEFHLDALKIFVLMTQEGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV 487
               N    + L  F  M  E     + +TL   LSACA L AL LG+ +H  A  SG  
Sbjct: 149 ---HNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLK 205

Query: 488 NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
            +++VGN+L+ MYAKCG I+NA  +F+  D  D+ISWN+LI G A++    +A+ LF +M
Sbjct: 206 GNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQM 265

Query: 548 VMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGR 607
              G  PD +TFIG+L AC+H+GLV+ G   F+ M + Y I P +EHY CM+D+L+RAGR
Sbjct: 266 KNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGR 325

Query: 608 LDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNM 667
           L++A   V+ M ++ +  IW  LLGACR+++N++L  +A+++L ELEP+  + Y +LSN+
Sbjct: 326 LEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNI 385

Query: 668 HAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
           + +AGRW++V +++V+M  +G +K PGCS IEV + +  F S D +  +  EI   L+ L
Sbjct: 386 YGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYSLDERHPQIEEIYGVLRGL 445

Query: 728 AAQIRN 733
              +R+
Sbjct: 446 VKVLRS 451



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 143/519 (27%), Positives = 235/519 (45%), Gaps = 104/519 (20%)

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           AR+LFD +P+  + A WN+M  GYA+  +Y E   +   M  +N+V+W SM++GY  + +
Sbjct: 4   ARQLFDQIPDP-NIALWNSMFRGYAQSESYRE---IFCEMFERNVVAWTSMINGYILSAD 59

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARN 246
           +  A + F+   ERDVV WN+M+ GY+E  D+  A K F ++P ++V+ W T+L GYA N
Sbjct: 60  LVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATN 119

Query: 247 GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER-----NPVSWTTM 301
           G +     LF++MP RN+ +WNA+I  Y   G   E    F  M        N  +  T+
Sbjct: 120 GNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTV 179

Query: 302 IDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG--YVQNKRMDEANQIFDKIGTHDVVC 359
           +    R+  LD  +       + ++ A+++ + G  YV N  MD                
Sbjct: 180 LSACARLGALDLGK-------WVHVYAESSGLKGNVYVGNALMDM--------------- 217

Query: 360 WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRN 419
                  YA+CG ++ AI++FR M  KD+++WNT+I G A              M  R  
Sbjct: 218 -------YAKCGIIENAISVFRGMDTKDLISWNTLIGGLA--------------MHSR-- 254

Query: 420 TVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHH 479
                             DAL +F  M   G+K D  T    L AC H+  ++ G     
Sbjct: 255 ----------------GADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDG----- 293

Query: 480 LAIKSGYVNDLFV------GNSLITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGY 531
            A      +D  +         ++ M A+ GR++ A + F    PV  D + W  L+   
Sbjct: 294 FAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQA-MAFVRKMPVEADGVIWAGLLGAC 352

Query: 532 AINGNATEAIKLFEEMVMEGVAPDPVTFIGVLS------------ACSHVGLVDGGLKLF 579
            I  N  E  +L  + ++E    +P  ++ +LS            A   V + D G K  
Sbjct: 353 RIYKN-VELAELALQRLIELEPKNPANYV-MLSNIYGDAGRWEDVARLKVAMRDTGFKKL 410

Query: 580 ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
              + +   + +VE Y+    L  R  +++E + +++G+
Sbjct: 411 PGCSLIEVNDAVVEFYS----LDERHPQIEEIYGVLRGL 445



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 183/379 (48%), Gaps = 48/379 (12%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKV 93
           A ++F Q+   N   +NSM   YA++      R++F +M +RN+V+W SMI GY+ +  +
Sbjct: 4   ARQLFDQIPDPNIALWNSMFRGYAQS---ESYREIFCEMFERNVVAWTSMINGYILSADL 60

Query: 94  KEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKI 153
             AR LFD     D+  W +M++ Y   G++ +AR+LF  +PN+ D   WN ++ GYA  
Sbjct: 61  VSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNR-DVMFWNTVLKGYATN 119

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV 213
           GN    + L + MP +NI SWN+++ GY  NG       FFE +      S+  ML    
Sbjct: 120 GNVEALEGLFEEMPERNIFSWNALIGGYAHNG------LFFEVLG-----SFKRMLS--- 165

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF---DQMPIR-NVVAWNA 269
           E D           +P  N  + VT+LS  AR G +   + +    +   ++ NV   NA
Sbjct: 166 ESD-----------VP-PNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNA 213

Query: 270 MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
           ++  Y + G IE A  +F  M  ++ +SW T+I G    ++  +A  L  QM  KN   +
Sbjct: 214 LMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQM--KNAGQK 271

Query: 330 TAMIS-----------GYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
              I+           G V++      +   D +    +  +  M+   A+ GR+++A+ 
Sbjct: 272 PDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMA 331

Query: 379 LFRQM-VNKDIVTWNTMIA 396
             R+M V  D V W  ++ 
Sbjct: 332 FVRKMPVEADGVIWAGLLG 350



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 151/320 (47%), Gaps = 21/320 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  ++   + G + EA K+F +M  ++ + +N+++  YA NG V     LFE+MP+RN+ 
Sbjct: 79  NIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIF 138

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARELFDL 133
           SWN++I GY HN    E    F +M       P+  +   +++   R G L+  + +   
Sbjct: 139 SWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVY 198

Query: 134 LPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
             +   K +    NA++  YAK G    A  +   M +K+++SWN+++ G   +     A
Sbjct: 199 AESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADA 258

Query: 191 SKFFEAM----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV-----SWVTMLS 241
              F  M    ++ D +++  +L     +  ++  + +FQ + +  ++      +  M+ 
Sbjct: 259 LNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVD 318

Query: 242 GYARNGRMLEARRLFDQMPIR-NVVAWNAMIAA---YVQRGQIEEAARLFIEMPERNPVS 297
             AR GR+ +A     +MP+  + V W  ++ A   Y      E A +  IE+  +NP +
Sbjct: 319 MLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPAN 378

Query: 298 WTTMIDGYVRIAKLDEARRL 317
           +  + + Y    + ++  RL
Sbjct: 379 YVMLSNIYGDAGRWEDVARL 398


>gi|242076488|ref|XP_002448180.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
 gi|241939363|gb|EES12508.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
          Length = 1029

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 236/773 (30%), Positives = 398/773 (51%), Gaps = 68/773 (8%)

Query: 27   KSGRVEEAIKIFSQM----SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNS 82
            + GR ++A+ +FS+M    S  + VTY ++IS  A  GR++DAR L +++   + V+WN+
Sbjct: 238  RVGRYQQALALFSRMEKMGSAPDQVTYVTIISTLASMGRLSDARTLLKRIQMPSTVAWNA 297

Query: 83   MIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDL-LPNK 137
            +I+ Y  +    E   L+  M R    P   ++A M++        ++ +++    + + 
Sbjct: 298  VISSYSQSGLESEVFGLYKDMKRQGLMPTRSTFASMLSAAASMTAFDEGQQIHAAAVKHG 357

Query: 138  EDTACW--NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
             D   +  ++++  Y K G  ++AKK+ D    KNIV WN+ML G+ +N       + F+
Sbjct: 358  LDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQ 417

Query: 196  AME----ERDVVSWNLMLDGYVELDDLDSAWKF----FQKIPEQNVVSWVTMLSGYARNG 247
             M     E D  ++  +L   + LD LD   +      +   + ++     ML  Y++ G
Sbjct: 418  YMRRADLEADDFTFVSVLGACINLDSLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLG 477

Query: 248  RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PER-------- 293
             +  A+ LF  +P ++ V+WNA+I       + EEA  +   M      P+         
Sbjct: 478  AIDVAKALFSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAIN 537

Query: 294  -------------------------NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA 328
                                     N    +++ID Y +   ++ +R++L  +   ++  
Sbjct: 538  ACSNIRATETGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSMVP 597

Query: 329  QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG-YAQC--------GRMDEAINL 379
              A+I+G VQN R DEA ++F ++        N       + C        G+   +  L
Sbjct: 598  INALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCTGPVSSVIGKQVHSYTL 657

Query: 380  FRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDA 439
               ++N+D     +++  Y + + ++DA K+  E+   +N V W A ISG+ QN +   +
Sbjct: 658  KSALLNQDTSLGISLVGIYLKCKLLEDANKLLAEVPDHKNLVEWTATISGYAQNGYSDQS 717

Query: 440  LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
            L +F  M     ++D +T A  L AC+ +AAL  G++IH L IKSG+V+     ++L+ M
Sbjct: 718  LVMFWRMRSHDVRSDEATFASVLKACSEIAALTDGKEIHGLIIKSGFVSYETAASALMDM 777

Query: 500  YAKCGRIQNAELLFKD-ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
            Y+KCG + ++  +FK+  +  +++ WNS+I G+A NG A EA+ LF++M    + PD VT
Sbjct: 778  YSKCGDVISSFEIFKELKNKQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQLKPDEVT 837

Query: 559  FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
             +GVL ACSH GL+  G  LF+ M++VY I P V+HYAC+IDLL R G L EA E++  +
Sbjct: 838  LLGVLIACSHAGLISEGRNLFDSMSQVYGIVPRVDHYACLIDLLGRGGHLQEAQEVIDQL 897

Query: 619  KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVE 678
              + +  IW T L AC+MH++ + G++A +KL E+EPQ++S Y  LS++HA AG W E +
Sbjct: 898  PFRADGVIWATFLAACQMHKDEERGKVAAKKLVEMEPQRSSTYVFLSSLHAAAGNWVEAK 957

Query: 679  KVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
              R +M   G  K PGCSWI V N+ + F+  D     T  I   L  L   +
Sbjct: 958  VAREAMREKGVMKFPGCSWITVGNKTNLFVVQDTHHPDTLGIYKMLDDLTGMM 1010



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 134/514 (26%), Positives = 247/514 (48%), Gaps = 82/514 (15%)

Query: 106 PDLFSWALMITCYTRKGELEKARELF-DLLPNK--EDTACWNAMVAGYAKIGNYNEAKKL 162
           PD F  A++++  +R G LE+ R++  D+L +       C   +V  YAK     +A+++
Sbjct: 158 PDQFGLAVVLSACSRLGALEQGRQVHCDVLKSGFCSSAFCQAGLVDMYAKCVEVKDARRV 217

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAW 222
            D +   + + W SM++GY + G    A   F  ME+                  + SA 
Sbjct: 218 FDGIACPDTICWASMIAGYHRVGRYQQALALFSRMEK------------------MGSA- 258

Query: 223 KFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEE 282
                 P+Q  V++VT++S  A  GR+ +AR L  ++ + + VAWNA+I++Y Q G   E
Sbjct: 259 ------PDQ--VTYVTIISTLASMGRLSDARTLLKRIQMPSTVAWNAVISSYSQSGLESE 310

Query: 283 AARLFIE------MPERNPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAM 332
              L+ +      MP R+  ++ +M+     +   DE +++    +      N+   +++
Sbjct: 311 VFGLYKDMKRQGLMPTRS--TFASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSL 368

Query: 333 ISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM--------- 383
           I+ YV++  + +A ++FD     ++V WN M+ G+ Q    +E I +F+ M         
Sbjct: 369 INLYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADD 428

Query: 384 ------------------------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEE 413
                                         ++ D+   N M+  Y+++  +D A  +F  
Sbjct: 429 FTFVSVLGACINLDSLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGAIDVAKALFSL 488

Query: 414 MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQL 473
           +   +++VSWNALI G   NE   +A+ +   M   G   D  + A A++AC+++ A + 
Sbjct: 489 I-PGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSNIRATET 547

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           G+QIH  +IK    ++  VG+SLI +Y+K G ++++  +    D   ++  N+LI G   
Sbjct: 548 GKQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSMVPINALITGLVQ 607

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
           N    EAI+LF++++ +G  P   TF  +LS C+
Sbjct: 608 NNREDEAIELFQQVLKDGFKPSNFTFASILSGCT 641



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 162/296 (54%), Gaps = 9/296 (3%)

Query: 329 QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN--- 385
           Q  ++  Y +   + +A ++FD I   D +CW  MI GY + GR  +A+ LF +M     
Sbjct: 198 QAGLVDMYAKCVEVKDARRVFDGIACPDTICWASMIAGYHRVGRYQQALALFSRMEKMGS 257

Query: 386 -KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
             D VT+ T+I+  A + ++ DA  + + + +  +TV+WNA+IS + Q+    +   ++ 
Sbjct: 258 APDQVTYVTIISTLASMGRLSDARTLLKRI-QMPSTVAWNAVISSYSQSGLESEVFGLYK 316

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG 504
            M ++G     ST A  LSA A + A   G+QIH  A+K G   ++FVG+SLI +Y K G
Sbjct: 317 DMKRQGLMPTRSTFASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYVKHG 376

Query: 505 RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLS 564
            I +A+ +F  +   +++ WN+++ G+  N    E I++F+ M    +  D  TF+ VL 
Sbjct: 377 CISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADDFTFVSVLG 436

Query: 565 ACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA---FEMVKG 617
           AC ++  +D G ++  C+T   +++  +     M+D+ S+ G +D A   F ++ G
Sbjct: 437 ACINLDSLDIGRQV-HCITIKNSMDADLFVANAMLDMYSKLGAIDVAKALFSLIPG 491



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 131/555 (23%), Positives = 259/555 (46%), Gaps = 43/555 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  +  I    K G + +A K+F   ++KN V +N+M+  + +N    +  ++F+ M +
Sbjct: 362 VFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRR 421

Query: 75  RNL----VSWNSMIAGYLHNDKVKEAREL----FDKMFRPDLFSWALMITCYTRKGELEK 126
            +L     ++ S++   ++ D +   R++           DLF    M+  Y++ G ++ 
Sbjct: 422 ADLEADDFTFVSVLGACINLDSLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGAIDV 481

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSG-- 180
           A+ LF L+P K D+  WNA++ G A      EA  +L  M    I    VS+ + ++   
Sbjct: 482 AKALFSLIPGK-DSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACS 540

Query: 181 ---YTKNG-EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSW 236
               T+ G ++H AS  +       V S   ++D Y +  D++S+ K    +   ++V  
Sbjct: 541 NIRATETGKQIHCASIKYNVCSNHAVGSS--LIDLYSKFGDVESSRKVLAHVDASSMVPI 598

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR---------GQIEEAARLF 287
             +++G  +N R  EA  LF Q+        N   A+ +           G+   +  L 
Sbjct: 599 NALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCTGPVSSVIGKQVHSYTLK 658

Query: 288 IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP-YKNIAAQTAMISGYVQNKRMDEAN 346
             +  ++     +++  Y++   L++A +LL ++P +KN+   TA ISGY QN   D++ 
Sbjct: 659 SALLNQDTSLGISLVGIYLKCKLLEDANKLLAEVPDHKNLVEWTATISGYAQNGYSDQSL 718

Query: 347 QIFDKIGTHDV----VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAG----Y 398
            +F ++ +HDV      +  ++K  ++   + +   +   ++    V++ T  +     Y
Sbjct: 719 VMFWRMRSHDVRSDEATFASVLKACSEIAALTDGKEIHGLIIKSGFVSYETAASALMDMY 778

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           ++   +  + +IF+E+  ++N + WN++I GF +N +  +AL +F  M +   K D  TL
Sbjct: 779 SKCGDVISSFEIFKELKNKQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQLKPDEVTL 838

Query: 459 ACALSACAHLAALQLGRQIH-HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD 517
              L AC+H   +  GR +   ++   G V  +     LI +  + G +Q A+ +  D  
Sbjct: 839 LGVLIACSHAGLISEGRNLFDSMSQVYGIVPRVDHYACLIDLLGRGGHLQEAQEVI-DQL 897

Query: 518 P--VDVISWNSLIAG 530
           P   D + W + +A 
Sbjct: 898 PFRADGVIWATFLAA 912



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 96/188 (51%), Gaps = 10/188 (5%)

Query: 450 GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA 509
           G   D   LA  LSAC+ L AL+ GRQ+H   +KSG+ +  F    L+ MYAKC  +++A
Sbjct: 155 GGTPDQFGLAVVLSACSRLGALEQGRQVHCDVLKSGFCSSAFCQAGLVDMYAKCVEVKDA 214

Query: 510 ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
             +F      D I W S+IAGY   G   +A+ LF  M   G APD VT++ ++S  + +
Sbjct: 215 RRVFDGIACPDTICWASMIAGYHRVGRYQQALALFSRMEKMGSAPDQVTYVTIISTLASM 274

Query: 570 GLVDGGLKLFECMTEVYAIE-PLVEHYACMIDLLSRAGRLDEAFEMVKGMK---IKPNAG 625
           G      +L +  T +  I+ P    +  +I   S++G   E F + K MK   + P   
Sbjct: 275 G------RLSDARTLLKRIQMPSTVAWNAVISSYSQSGLESEVFGLYKDMKRQGLMPTRS 328

Query: 626 IWGTLLGA 633
            + ++L A
Sbjct: 329 TFASMLSA 336



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/283 (20%), Positives = 123/283 (43%), Gaps = 42/283 (14%)

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAG----YAQIRQMDDAV 408
           GT D     V++   ++ G +++   +   ++     +     AG    YA+  ++ DA 
Sbjct: 156 GTPDQFGLAVVLSACSRLGALEQGRQVHCDVLKSGFCSSAFCQAGLVDMYAKCVEVKDAR 215

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
           ++F+ +    +T+ W ++I+G+ +   +  AL +F  M + G   D  T           
Sbjct: 216 RVFDGIACP-DTICWASMIAGYHRVGRYQQALALFSRMEKMGSAPDQVT----------- 263

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
                            YV       ++I+  A  GR+ +A  L K       ++WN++I
Sbjct: 264 -----------------YV-------TIISTLASMGRLSDARTLLKRIQMPSTVAWNAVI 299

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI 588
           + Y+ +G  +E   L+++M  +G+ P   TF  +LSA + +   D G ++     + + +
Sbjct: 300 SSYSQSGLESEVFGLYKDMKRQGLMPTRSTFASMLSAAASMTAFDEGQQIHAAAVK-HGL 358

Query: 589 EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           +  V   + +I+L  + G + +A + V     + N  +W  +L
Sbjct: 359 DANVFVGSSLINLYVKHGCISDA-KKVFDFSTEKNIVMWNAML 400


>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/531 (38%), Positives = 301/531 (56%), Gaps = 10/531 (1%)

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP---IR-NVVAW 267
           +V L  +  A   F   P+  V  W  +  GY  N    E   LF +M    +R N   +
Sbjct: 109 WVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTF 168

Query: 268 NAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
             ++ +  + G   E   +  E+     E N    TT+ID Y     +  A +L   M  
Sbjct: 169 PLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLE 228

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
           +NI A T+MISGY+   R+  A ++FD     DVV WN+M+ GY + G M  A  LF  M
Sbjct: 229 RNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTM 288

Query: 384 VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
             +D ++WNTM+ GYA    ++   ++FEEM   RN  SWN LI G+  N    + L+ F
Sbjct: 289 PYRDTMSWNTMLNGYANNGDVEACEQLFEEM-PERNVFSWNGLIGGYAHNGCFFEVLRCF 347

Query: 444 VLMTQEGKKA-DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
             M  +G    + +TL   LSACA L AL LG+ +H  A   G+   ++VGN+LI MY+K
Sbjct: 348 KRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSK 407

Query: 503 CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
           CG I+NA  +F+  D  D+I+WNS+I G A +G   +A+ LF +M + G  PD +TFIGV
Sbjct: 408 CGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGV 467

Query: 563 LSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKP 622
           L +C+H+GLV+ G   F  M   Y+I P +EHY CM+DL  RAG LD A E VK M ++ 
Sbjct: 468 LCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEA 527

Query: 623 NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRV 682
           +A IW  LLGACR+++NI L  +A++KL  LEP+  + Y LLSN++ + GRW +V ++++
Sbjct: 528 DAVIWAALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKI 587

Query: 683 SMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
            M  +G++K PGCS IEV + +  F S D +  ++ EI   LK L   +R+
Sbjct: 588 LMRDTGSKKLPGCSLIEVNDSVVEFYSLDERHSQSKEIYGVLKGLMKLLRS 638



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 143/546 (26%), Positives = 233/546 (42%), Gaps = 110/546 (20%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKE 95
           +I +   Q N     ++++++    ++  AR LF+  P   +  WN++  GY HN   +E
Sbjct: 89  QIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYRE 148

Query: 96  ARELFDKM----FRPDLFSWALMITCYTRKGELEKARELF------DLLPNKEDTACWNA 145
              LF KM     RP+ F++ L++    + G   +  E+        L  N+        
Sbjct: 149 VVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLID 208

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW 205
           + +G   IG+   A KL   M  +NIV+W SM+SGY     + LA + F+   ERDVV W
Sbjct: 209 VYSGGRAIGS---AYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLW 265

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
           N+M+ GY+E+ D+ +A K F  +P ++ +SW TML+GYA NG +    +LF++MP RNV 
Sbjct: 266 NIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVF 325

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEM-----PERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
           +WN +I  Y   G   E  R F  M        N  +  T++    R+  LD  +     
Sbjct: 326 SWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGK----- 380

Query: 321 MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF 380
             + ++ A T    G                     +   N +I  Y++CG ++ A+ +F
Sbjct: 381 --WVHVYAATIGFKG--------------------SIYVGNALIDMYSKCGLIENAMEVF 418

Query: 381 RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
             M  KD++TWN+MI G A      DA+ +F +M                          
Sbjct: 419 ESMDLKDLITWNSMICGLATHGCGADALTLFHQM-------------------------- 452

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500
           KI       G+K D  T    L +C HL  ++ G                   NS++  Y
Sbjct: 453 KI------NGEKPDGITFIGVLCSCTHLGLVEEGTSYF---------------NSMVNEY 491

Query: 501 AKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
           +   +I++               +  ++  +   G    AI+  + M ME    D V + 
Sbjct: 492 SIAPQIEH---------------YGCMVDLFGRAGLLDRAIEFVKRMPMEA---DAVIWA 533

Query: 561 GVLSAC 566
            +L AC
Sbjct: 534 ALLGAC 539



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 169/346 (48%), Gaps = 21/346 (6%)

Query: 27  KSGR-VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIA 85
             GR +  A K+F  M ++N V + SMIS Y    RV  AR+LF+  P+R++V WN M++
Sbjct: 211 SGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVS 270

Query: 86  GYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNA 145
           GY+    +K AR+LFD M   D  SW  M+  Y   G++E   +LF+ +P + +   WN 
Sbjct: 271 GYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPER-NVFSWNG 329

Query: 146 MVAGYAKIGNYNEA-----KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS--KFFEAM- 197
           ++ GYA  G + E      + L+D +   N  +  ++LS   + G + L      + A  
Sbjct: 330 LIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATI 389

Query: 198 -EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF 256
             +  +   N ++D Y +   +++A + F+ +  +++++W +M+ G A +G   +A  LF
Sbjct: 390 GFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLF 449

Query: 257 DQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVR 307
            QM I     + + +  ++ +    G +EE    F  M     ++     +  M+D + R
Sbjct: 450 HQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGR 509

Query: 308 IAKLDEARRLLDQMPYKNIAAQTAMISGYVQ-NKRMDEANQIFDKI 352
              LD A   + +MP +  A   A + G  +  K +D A     K+
Sbjct: 510 AGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKL 555



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 148/310 (47%), Gaps = 21/310 (6%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL 88
           G ++ A K+F  M  ++T+++N+M++ YA NG V    +LFE+MP+RN+ SWN +I GY 
Sbjct: 276 GDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYA 335

Query: 89  HNDKVKEA-----RELFDKMFRPDLFSWALMITCYTRKGELEKARELF---DLLPNKEDT 140
           HN    E      R L D +  P+  +   +++   R G L+  + +      +  K   
Sbjct: 336 HNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSI 395

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM--- 197
              NA++  Y+K G    A ++ ++M  K++++WNSM+ G   +G    A   F  M   
Sbjct: 396 YVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKIN 455

Query: 198 -EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLE 251
            E+ D +++  +L     L  ++    +F  +  +  ++     +  M+  + R G +  
Sbjct: 456 GEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDR 515

Query: 252 ARRLFDQMPIR-NVVAWNAMIAA---YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVR 307
           A     +MP+  + V W A++ A   Y      E A +  I +  +NP ++  + + Y  
Sbjct: 516 AIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGD 575

Query: 308 IAKLDEARRL 317
           + +  +  RL
Sbjct: 576 LGRWKDVARL 585



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 10/151 (6%)

Query: 7   SIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDAR 66
           +IG KGS ++  N  I    K G +E A+++F  M  K+ +T+NSMI   A +G   DA 
Sbjct: 388 TIGFKGS-IYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLATHGCGADAL 446

Query: 67  KLFEQMP----QRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITC 117
            LF QM     + + +++  ++    H   V+E    F+ M       P +  +  M+  
Sbjct: 447 TLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDL 506

Query: 118 YTRKGELEKARELFDLLPNKEDTACWNAMVA 148
           + R G L++A E    +P + D   W A++ 
Sbjct: 507 FGRAGLLDRAIEFVKRMPMEADAVIWAALLG 537



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 88/196 (44%), Gaps = 9/196 (4%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           L +C  +A LQ   ++    I  G+  + +V  +++T +    ++ +A  LF       V
Sbjct: 74  LRSCKTVALLQ---KVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPKV 130

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC 581
             WN++  GY  N    E + LF +M    V P+  TF  VL +C+ +G    G ++  C
Sbjct: 131 ELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEI-HC 189

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIK 641
                 +E        +ID+ S    +  A+++  GM ++ N   W +++    +   + 
Sbjct: 190 EVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGM-LERNIVAWTSMISGYILCNRVA 248

Query: 642 LGRIAVEKLSELEPQK 657
           L R    +L +L P++
Sbjct: 249 LAR----RLFDLAPER 260


>gi|218184996|gb|EEC67423.1| hypothetical protein OsI_34621 [Oryza sativa Indica Group]
          Length = 799

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 223/713 (31%), Positives = 377/713 (52%), Gaps = 37/713 (5%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           +F  M +++TV++N+M++AY+  G ++ A  LF+ MP  ++VSWN++++GY      +E+
Sbjct: 74  VFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQES 133

Query: 97  RELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAG 149
            +LF +M R    PD  ++A+++   +   EL    ++  L      + D    +A+V  
Sbjct: 134 VDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDM 193

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSW 205
           Y K  + ++A      MP +N VSW S ++G  +N +     + F  M+   +     S+
Sbjct: 194 YGKCRSLDDALCFFYGMPERNWVSWGSAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSY 253

Query: 206 NLMLDGYVELDDLDSAWKFF-----QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
                    +  L++  +        K     VV    ++  YA+   + +ARR F  +P
Sbjct: 254 ASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVG-TAIVDVYAKANSLTDARRAFFGLP 312

Query: 261 IRNVVAWNA-MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLD 319
              V   NA M+  ++ R  I      F  +      S      GY    ++        
Sbjct: 313 NHTVETSNAMMVGLFMIRSSIR-----FDVVSLSGVFSACAETKGYFPGQQV-------- 359

Query: 320 QMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
                +  A  +++  Y + K + EA  IF  +   D V WN +I    Q G  D+ I  
Sbjct: 360 -----HCLAIKSVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILH 414

Query: 380 FRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDA 439
           F +M+  D    +T++  Y +   +D+A K+ + +G ++  VSWNA++SGF  N+    A
Sbjct: 415 FNEMLRFDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQ-VVSWNAILSGFSLNKESEAA 473

Query: 440 LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
            K F  M   G K DH T A  L  CA+LA ++LG+QIH   IK   ++D ++ ++L+ M
Sbjct: 474 QKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDM 533

Query: 500 YAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTF 559
           YAKCG + ++ L+F+  +  D +SWN++I GYA++G   EA+++FE M  E V P+  TF
Sbjct: 534 YAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATF 593

Query: 560 IGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMK 619
           + VL ACSHVGL D G + F  MT  Y +EP +EH+ACM+D+L R+    EA + +  M 
Sbjct: 594 VAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMP 653

Query: 620 IKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEK 679
            + +A IW TLL  C++ Q++++  +A   +  L+P  +S Y LLSN++AE+G+W +V +
Sbjct: 654 FQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSR 713

Query: 680 VRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            R  ++    +K+PGCSWIE ++++H FL GD    R+ E+   L  L  +++
Sbjct: 714 TRRLLKQGRLKKEPGCSWIEAQSEMHGFLVGDKAHPRSGELYEMLNDLIGEMK 766



 Score =  129 bits (324), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 119/482 (24%), Positives = 204/482 (42%), Gaps = 87/482 (18%)

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
           N +L  Y        A + F  +P ++ VSW TML+ Y+  G +  A  LFD MP  +VV
Sbjct: 56  NCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVV 115

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           +WNA+++ Y QRG  +E+  LF+EM  R      T     ++     E   L  Q+    
Sbjct: 116 SWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQV--HA 173

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
           +A +T +                       DV   + ++  Y +C  +D+A+  F  M  
Sbjct: 174 LAVKTGL---------------------EIDVRTGSALVDMYGKCRSLDDALCFFYGMPE 212

Query: 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVL 445
           ++ V+W + IAG  Q                                NE ++  L++F+ 
Sbjct: 213 RNWVSWGSAIAGCVQ--------------------------------NEQYVRGLELFIE 240

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
           M + G      + A A  +CA ++ L  GRQ+H  AIK+ + +D  VG +++ +YAK   
Sbjct: 241 MQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANS 300

Query: 506 IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565
           + +A   F       V + N+++ G            LF  M+   +  D V+  GV SA
Sbjct: 301 LTDARRAFFGLPNHTVETSNAMMVG------------LF--MIRSSIRFDVVSLSGVFSA 346

Query: 566 CSHV-GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNA 624
           C+   G   G  +   C+    AI+ +       +DL  +   L EA+ + +GMK K + 
Sbjct: 347 CAETKGYFPG--QQVHCL----AIKSV-------LDLYGKCKALMEAYLIFQGMKQKDSV 393

Query: 625 GIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSM 684
             W  ++ A  + QN       +   +E+        + + +M+ + G  DE +K+   +
Sbjct: 394 S-WNAIIAA--LEQNGHYDD-TILHFNEMLRFDAFVASTVVDMYCKCGIIDEAQKLHDRI 449

Query: 685 EG 686
            G
Sbjct: 450 GG 451



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 181/382 (47%), Gaps = 31/382 (8%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
           M+A L   G K     + N  I  L ++G  ++ I  F++M + +    ++++  Y K G
Sbjct: 378 MEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFDAFVASTVVDMYCKCG 437

Query: 61  RVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMIT 116
            +++A+KL +++  + +VSWN++++G+  N + + A++ F +M     +PD F++A ++ 
Sbjct: 438 IIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEAAQKFFSEMLDMGLKPDHFTFATVLD 497

Query: 117 CYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS 173
                  +E  +++   +  +E   D    + +V  YAK G+  ++  + + +  ++ VS
Sbjct: 498 TCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVS 557

Query: 174 WNSMLSGYTKNGEMHLASKFFEAMEERDVV----SWNLMLDGYVELDDLDSAWKFFQKIP 229
           WN+M+ GY  +G    A + FE M++ +VV    ++  +L     +   D   ++F  + 
Sbjct: 558 WNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMT 617

Query: 230 -----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE-- 281
                E  +  +  M+    R+    EA +  + MP + + V W  +++    R  +E  
Sbjct: 618 THYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIA 677

Query: 282 --EAARLFIEMPERNPVSWTTMIDGYVRIAK---LDEARRLLDQMPYKN------IAAQT 330
              A+ + +  P+ + V +  + + Y    K   +   RRLL Q   K       I AQ+
Sbjct: 678 ELAASNVLLLDPDDSSV-YILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEAQS 736

Query: 331 AMISGYVQNKRMDEANQIFDKI 352
            M    V +K    + ++++ +
Sbjct: 737 EMHGFLVGDKAHPRSGELYEML 758



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 33/184 (17%)

Query: 482 IKSGYVNDLFVGNSLITM-------------------------------YAKCGRIQNAE 510
           + SG+V   FV N L+ M                               Y+  G I  A 
Sbjct: 44  VVSGFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAV 103

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
            LF      DV+SWN+L++GY   G   E++ LF EM   GV+PD  TF  +L +CS + 
Sbjct: 104 ALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALE 163

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
            +  G+++     +   +E  V   + ++D+  +   LD+A     GM  + N   WG+ 
Sbjct: 164 ELSLGVQVHALAVKT-GLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPER-NWVSWGSA 221

Query: 631 LGAC 634
           +  C
Sbjct: 222 IAGC 225


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 228/643 (35%), Positives = 363/643 (56%), Gaps = 58/643 (9%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N ++  Y+K G    A+KL D MP +   SWN++LS Y+K G+M    +FF+ + +RD V
Sbjct: 53  NNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSV 112

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKI------PEQ----NVVSWV---------------- 237
           SW  M+ GY  +     A +    +      P Q    NV++ V                
Sbjct: 113 SWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFI 172

Query: 238 -------------TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA 284
                        ++L+ YA+ G  + A+ +FD+M +R++ +WNAMIA ++Q GQ++ A 
Sbjct: 173 VKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAM 232

Query: 285 RLFIEMPERNPVSWTTMIDGYVR----IAKLDEARRLL-DQMPYKNIAAQTAMISGYVQN 339
             F +M ER+ V+W +MI G+ +    +  LD   ++L D +   +     +++S     
Sbjct: 233 AQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANL 292

Query: 340 KRMDEANQIFDKIGT--HDV--VCWNVMIKGYAQCGRMDEAINLFRQMVNKD--IVTWNT 393
           +++    QI   I T   D+  +  N +I  Y++CG ++ A  L  Q   KD  I  +  
Sbjct: 293 EKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTA 352

Query: 394 MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA 453
           ++ GY ++  M+ A  IF  + K R+ V+W A+I G+ Q+  + +A+ +F  M   G++ 
Sbjct: 353 LLDGYIKLGDMNQAKNIFVSL-KDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRP 411

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
           +  TLA  LS  + LA+L  G+QIH  A+KSG +  + V N+LITMYAK G I +A   F
Sbjct: 412 NSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAF 471

Query: 514 KDADPV----DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
              D +    D +SW S+I   A +G+A EA++LFE M+MEG+ PD +T++GV SAC+H 
Sbjct: 472 ---DLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHA 528

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629
           GLV+ G + F+ M +V  I P + HYACM+DL  RAG L EA E ++ M I+P+   WG+
Sbjct: 529 GLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGS 588

Query: 630 LLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689
           LL ACR+H+NI LG++A E+L  LEP+ +  Y+ L+N+++  G+W+E  K+R SM+    
Sbjct: 589 LLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRV 648

Query: 690 QKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +K+ G SWIEVK+++H F   D       EI  T+K +  +I+
Sbjct: 649 KKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIK 691



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 136/551 (24%), Positives = 266/551 (48%), Gaps = 30/551 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V+  N  +    K+G    A K+F +M  +   ++N+++SAY+K G ++   + F+Q+PQ
Sbjct: 49  VYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQ 108

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAREL 130
           R+ VSW +MI GY +  +  +A  +   M +    P  F+   ++        +E  +++
Sbjct: 109 RDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKV 168

Query: 131 FDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
              +     + + +  N+++  YAK G+   AK + D M  ++I SWN+M++ + + G+M
Sbjct: 169 HSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQM 228

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSG 242
            LA   FE M ERD+V+WN M+ G+ +      A   F K+   +++S       ++LS 
Sbjct: 229 DLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSA 288

Query: 243 YARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-- 296
            A   ++   +++   +         +  NA+I+ Y + G +E A RL  +   ++    
Sbjct: 289 CANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIE 348

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI--GT 354
            +T ++DGY+++  +++A+ +   +  +++ A TAMI GY Q+    EA  +F  +  G 
Sbjct: 349 GFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGG 408

Query: 355 HDVVCWNV--MIKGYAQCGRMDEAINLFRQMVNK----DIVTWNTMIAGYAQIRQMDDAV 408
                + +  M+   +    +     +    V       +   N +I  YA+   +  A 
Sbjct: 409 QRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSAS 468

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
           + F+ +   R+TVSW ++I    Q+    +AL++F  M  EG + DH T     SAC H 
Sbjct: 469 RAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHA 528

Query: 469 AALQLGRQIHHLAIK-SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWN 525
             +  GRQ   +       +  L     ++ ++ + G +Q A+  F +  P+  DV++W 
Sbjct: 529 GLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQ-EFIEKMPIEPDVVTWG 587

Query: 526 SLIAGYAINGN 536
           SL++   ++ N
Sbjct: 588 SLLSACRVHKN 598



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 139/526 (26%), Positives = 226/526 (42%), Gaps = 110/526 (20%)

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
           +V   N ++  Y + G    A +LF EMP R   SW T++  Y +   +D      DQ+P
Sbjct: 48  SVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLP 107

Query: 323 YKNIAAQTAMISGY-----------------------------------VQNKRMDEANQ 347
            ++  + T MI GY                                      + M+   +
Sbjct: 108 QRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKK 167

Query: 348 IFD---KIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQ 403
           +     K+G   +V   N ++  YA+CG    A  +F +MV +DI +WN MIA + Q+ Q
Sbjct: 168 VHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQ 227

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG-KKADHSTLACAL 462
           MD A+  FE+M + R+ V+WN++ISGF Q  + L AL IF  M ++     D  TLA  L
Sbjct: 228 MDLAMAQFEQMAE-RDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVL 286

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL---------- 512
           SACA+L  L +G+QIH   + +G+     V N+LI+MY++CG ++ A  L          
Sbjct: 287 SACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLK 346

Query: 513 -----------------------FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549
                                  F      DV++W ++I GY  +G+  EAI LF  MV 
Sbjct: 347 IEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVG 406

Query: 550 EGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMT---EVYAIE---PLVEHYA------- 596
            G  P+  T   +LS  S +  +  G ++        E+Y++     L+  YA       
Sbjct: 407 GGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITS 466

Query: 597 ------------------CMIDLLSRAGRLDEAFEMVKGM---KIKPNAGIWGTLLGACR 635
                              MI  L++ G  +EA E+ + M    ++P+   +  +  AC 
Sbjct: 467 ASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACT 526

Query: 636 MHQNIKLGRIAVEKLSELEP--QKTSCYALLSNMHAEAGRWDEVEK 679
               +  GR   + + +++      S YA + ++   AG   E ++
Sbjct: 527 HAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQE 572



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 146/329 (44%), Gaps = 56/329 (17%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVT--YNSMISAYAKNGRVNDARKLFEQMPQRN 76
           N  I+   + G VE A ++  Q   K+     + +++  Y K G +N A+ +F  +  R+
Sbjct: 318 NALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRD 377

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALM------------------ 114
           +V+W +MI GY  +    EA  LF  M     RP+ ++ A M                  
Sbjct: 378 VVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHG 437

Query: 115 -----------------ITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYN 157
                            IT Y + G +  A   FDL+  + DT  W +M+   A+ G+  
Sbjct: 438 SAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAE 497

Query: 158 EAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASKFFEAMEERDVV-----SWNLM 208
           EA +L + M  + +    +++  + S  T  G ++   ++F+ M++ D +      +  M
Sbjct: 498 EALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACM 557

Query: 209 LDGYVELDDLDSAWKFFQKIP-EQNVVSWVTMLSGYARNGRM----LEARRLFDQMPIRN 263
           +D +     L  A +F +K+P E +VV+W ++LS    +  +    + A RL    P  N
Sbjct: 558 VDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEP-EN 616

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEMPE 292
             A++A+   Y   G+ EEAA++   M +
Sbjct: 617 SGAYSALANLYSACGKWEEAAKIRKSMKD 645



 Score = 44.7 bits (104), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 31/133 (23%)

Query: 477 IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGN 536
           +H   IKSG +  +++ N+L+ +Y+K G   +A  LF +       SWN++++ Y+  G+
Sbjct: 36  VHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGD 95

Query: 537 AT-------------------------------EAIKLFEEMVMEGVAPDPVTFIGVLSA 565
                                            +AI++  +MV EG+ P   T   VL++
Sbjct: 96  MDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLAS 155

Query: 566 CSHVGLVDGGLKL 578
            +    ++ G K+
Sbjct: 156 VAATRCMETGKKV 168


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/544 (36%), Positives = 309/544 (56%), Gaps = 41/544 (7%)

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIE 289
           E N       ++  +R  R+  AR+LFD++P  N   WNAM   Y+Q G   +   LF E
Sbjct: 41  EHNDFVAPNFITTCSRFKRIHHARKLFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGE 100

Query: 290 ------MP---------------------------------ERNPVSWTTMIDGYVRIAK 310
                 MP                                 + N    T++ID Y +   
Sbjct: 101 LNRIAGMPNCFTFPMIIKSCGKLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGC 160

Query: 311 LDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC 370
           +++A ++  +M  +N+   TA+I+GY+    +    ++FD     DVV W+V+I GY + 
Sbjct: 161 VEDAYKVFGEMHERNVVVWTAIINGYILCGDVVSGRRLFDLAPERDVVMWSVLISGYIES 220

Query: 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
             M  A  LF +M N+D ++WN M+ GYA   +++   K+F+EM   RN  SWN LI G+
Sbjct: 221 KNMAAARELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEM-PERNVFSWNGLIGGY 279

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHS-TLACALSACAHLAALQLGRQIHHLAIKSGYVND 489
           ++N    + L+ F  M  EG    +  TL   LSAC+ L AL +G+ +H  A   GY  +
Sbjct: 280 VKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGN 339

Query: 490 LFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549
           LFVGN LI MYAKCG I+NA ++F   D  D+ISWN++I G AI+G+A +A+ +F+ M  
Sbjct: 340 LFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKS 399

Query: 550 EGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLD 609
           EG  PD VTF+G+LSAC+H+GLV  G   F+ M + Y+I P +EHY CM+DLL RAG LD
Sbjct: 400 EGEEPDGVTFVGILSACTHMGLVKDGFLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLD 459

Query: 610 EAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHA 669
           +A   ++ M I+P+A IW  LLGACR+++N+++  +A+++L ELEP   + + ++SN++ 
Sbjct: 460 QALNFIRKMPIEPDAVIWAALLGACRLYKNVEIAELALQRLIELEPNNPANFVMVSNIYK 519

Query: 670 EAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAA 729
           + GR ++V +++++M  +G +K PGCS IE  + +  F S D +   T  I   LK L  
Sbjct: 520 DLGRSEDVARLKIAMRDTGFRKLPGCSVIECNDSVVEFYSLDERHSETESIYRVLKGLTM 579

Query: 730 QIRN 733
            +R+
Sbjct: 580 LLRS 583



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 154/616 (25%), Positives = 283/616 (45%), Gaps = 101/616 (16%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKE 95
           +I +   + N     + I+  ++  R++ ARKLF+++PQ N  +WN+M  GYL N   ++
Sbjct: 34  QIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFDKIPQPNTATWNAMFRGYLQNGHHRD 93

Query: 96  ARELFDKMFR----PDLFSWALMI-TCYTRKGELEKARELFDL------LPNKEDTACWN 144
              LF ++ R    P+ F++ ++I +C    G+LE  RE  ++         K ++    
Sbjct: 94  TVVLFGELNRIAGMPNCFTFPMIIKSC----GKLEGVREGEEVHCCATKHGFKSNSFVAT 149

Query: 145 AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS 204
           +++  Y+K G   +A K+   M  +N+V W ++++GY   G++    + F+   ERDVV 
Sbjct: 150 SLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGYILCGDVVSGRRLFDLAPERDVVM 209

Query: 205 WNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV 264
           W++++ GY+E  ++ +A + F K+P ++ +SW  ML+GYA NG +    ++FD+MP RNV
Sbjct: 210 WSVLISGYIESKNMAAARELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNV 269

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL--LDQMP 322
            +WN +I  YV+ G   E    F    +R  V    + + +  +A L    RL  LD   
Sbjct: 270 FSWNGLIGGYVKNGLFSETLESF----KRMLVEGHVIPNDFTLVAVLSACSRLGALDMGK 325

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
           + ++ A++    GY  N                 +   NV+I  YA+CG ++ A+ +F  
Sbjct: 326 WVHVYAESI---GYKGN-----------------LFVGNVLIDMYAKCGVIENAVVVFNC 365

Query: 383 MVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI 442
           +  KDI++WNT+I G A      DA+ +F+                              
Sbjct: 366 LDRKDIISWNTIINGLAIHGHAPDALGMFDR----------------------------- 396

Query: 443 FVLMTQEGKKADHSTLACALSACAHLAALQLG-----RQIHHLAIKSGYVNDLFVGNSLI 497
              M  EG++ D  T    LSAC H+  ++ G       + H +I    V  +     ++
Sbjct: 397 ---MKSEGEEPDGVTFVGILSACTHMGLVKDGFLYFKSMVDHYSI----VPQIEHYGCMV 449

Query: 498 TMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555
            +  + G +  A L F    P+  D + W +L+    +  N  E  +L  + ++E    +
Sbjct: 450 DLLGRAGLLDQA-LNFIRKMPIEPDAVIWAALLGACRLYKN-VEIAELALQRLIELEPNN 507

Query: 556 PVTFIGVLSACSHVG-----------LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSR 604
           P  F+ V +    +G           + D G +     + +   + +VE Y+    L  R
Sbjct: 508 PANFVMVSNIYKDLGRSEDVARLKIAMRDTGFRKLPGCSVIECNDSVVEFYS----LDER 563

Query: 605 AGRLDEAFEMVKGMKI 620
               +  + ++KG+ +
Sbjct: 564 HSETESIYRVLKGLTM 579



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 170/339 (50%), Gaps = 21/339 (6%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F     I    K G VE+A K+F +M ++N V + ++I+ Y   G V   R+LF+  P+R
Sbjct: 146 FVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGYILCGDVVSGRRLFDLAPER 205

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           ++V W+ +I+GY+ +  +  ARELFDKM   D  SW  M+  Y   GE+E   ++FD +P
Sbjct: 206 DVVMWSVLISGYIESKNMAAARELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMP 265

Query: 136 NKEDTACWNAMVAGYAKIGNYNEA-----KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
            + +   WN ++ GY K G ++E      + L++     N  +  ++LS  ++ G + + 
Sbjct: 266 ER-NVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMG 324

Query: 191 SKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR 245
            K+     E      ++   N+++D Y +   +++A   F  +  ++++SW T+++G A 
Sbjct: 325 -KWVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAI 383

Query: 246 NGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV----- 296
           +G   +A  +FD+M       + V +  +++A    G +++    F  M +   +     
Sbjct: 384 HGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVKDGFLYFKSMVDHYSIVPQIE 443

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG 335
            +  M+D   R   LD+A   + +MP +  A   A + G
Sbjct: 444 HYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALLG 482



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 92/196 (46%), Gaps = 9/196 (4%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           L +C +   L    QI    +  G  ++ FV  + IT  ++  RI +A  LF      + 
Sbjct: 19  LRSCKNYERLH---QIQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFDKIPQPNT 75

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC 581
            +WN++  GY  NG+  + + LF E+      P+  TF  ++ +C  +  V  G ++  C
Sbjct: 76  ATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVREGEEVHCC 135

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIK 641
            T+ +  +        +ID+ S+ G +++A+++   M  + N  +W  ++    +  ++ 
Sbjct: 136 ATK-HGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHER-NVVVWTAIINGYILCGDVV 193

Query: 642 LGRIAVEKLSELEPQK 657
            GR    +L +L P++
Sbjct: 194 SGR----RLFDLAPER 205


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 233/767 (30%), Positives = 410/767 (53%), Gaps = 69/767 (8%)

Query: 2   KASLKSIGNKGSY-------VFNQNKKITQLGKSGRVEEAIKIFSQMSQK---NTVTYNS 51
           +ASL+++ ++          V + N ++ +  +SG ++ A+K+   +S K   +  T  S
Sbjct: 41  RASLRTVSDRADSITTFDRSVTDANTQLRRFCESGNLKNAVKLL-HVSGKWDIDPRTLCS 99

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG-----YLHNDKVKEARELFDKMFRP 106
           ++   A +  + D +++ +   + N    +S +       Y +   +KEA  +FD++   
Sbjct: 100 VLQLCADSKSLKDGKEV-DNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIE 158

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLL 163
               W +++    + G+   +  LF  + +   + D+  ++ +   ++ + + N  ++L 
Sbjct: 159 KALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLH 218

Query: 164 -----DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDL 218
                     +N V  NS+++ Y KN  +  A K F+ M ERDV+SWN +++GYV     
Sbjct: 219 GYILKSGFGERNSVG-NSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLA 277

Query: 219 DSAWKFFQKI----PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA-----WNA 269
           +     F ++     E ++ + V++ +G A + R++   R      ++   +      N 
Sbjct: 278 EKGLSVFVQMLFSGIEIDLATIVSVFAGCA-DSRLISLGRAVHCFGVKACFSREDRFCNT 336

Query: 270 MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
           ++  Y + G ++ A  +F EM  R+ VS+T+MI GY R     EA +L ++M  + I+  
Sbjct: 337 LLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPD 396

Query: 330 ----TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
               TA+++   +N+ +DE  ++ + I  +D+        G+                  
Sbjct: 397 VYTVTAVLNCCARNRLLDEGKRVHEWIKENDM--------GF------------------ 430

Query: 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVL 445
            DI   N ++  YA+   M +A  +F EM + ++ +SWN +I G+ +N +  +AL +F L
Sbjct: 431 -DIFVSNALMDMYAKCGSMREAELVFSEM-RVKDIISWNTVIGGYSKNCYANEALSLFNL 488

Query: 446 MTQEGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG 504
           +  E +   D  T+AC L ACA L+A   GR+IH   +++GY +D  V NSL+ MYAKCG
Sbjct: 489 LLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCG 548

Query: 505 RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLS 564
            +  A LLF D    D++SW  +IAGY ++G   EAI LF +M   G+ PD ++F+ +L 
Sbjct: 549 ALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLY 608

Query: 565 ACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNA 624
           ACSH GLVD G + F  M     IEP VEHYAC++D+L+R G L +A+  ++ M I P+A
Sbjct: 609 ACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDA 668

Query: 625 GIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSM 684
            IWG LL  CR+H ++KL     EK+ ELEP+ T  Y L++N++AEA +W+EV+++R  +
Sbjct: 669 TIWGALLCGCRIHHDVKLAERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRI 728

Query: 685 EGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
              G +K PGCSWIE+K +++ F++GD     T +I   L+ + A++
Sbjct: 729 GQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETEKIEAFLRGVRARM 775



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 93/199 (46%), Gaps = 12/199 (6%)

Query: 384 VNKDIVTWNTMIAGYAQIRQMDD---AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
           +  D+     +I   A +R + D   ++  F+      NT       SG L+N     A+
Sbjct: 27  LRSDVRVRKDVIFNRASLRTVSDRADSITTFDRSVTDANTQLRRFCESGNLKN-----AV 81

Query: 441 KIFVLMTQEGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
           K   L+   GK   D  TL   L  CA   +L+ G+++ +    +G+V D  +G+ L  M
Sbjct: 82  K---LLHVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALM 138

Query: 500 YAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTF 559
           Y  CG ++ A  +F        + WN L+   A +G+ + +I LF++M+  GV  D  TF
Sbjct: 139 YTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTF 198

Query: 560 IGVLSACSHVGLVDGGLKL 578
             V  + S +  V+GG +L
Sbjct: 199 SCVSKSFSSLRSVNGGEQL 217


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 224/664 (33%), Positives = 355/664 (53%), Gaps = 49/664 (7%)

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           F+P       +I  Y +  EL+ AR+LFD + ++ D      MV+GY   G+   A+ + 
Sbjct: 45  FQPHAHILNRLIDVYCKSSELDYARQLFDEI-SEPDKIARTTMVSGYCASGDIALARSVF 103

Query: 164 DAMPS--KNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDD 217
           +  P   ++ V +N+M++G++ N + + A   F  M+      D  ++  +L G   + D
Sbjct: 104 EETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLALVVD 163

Query: 218 LDSAWKFFQKIPEQNVVSWVT-----MLSGYARNGR----MLEARRLFDQMPIRNVVAWN 268
            +     F     ++   +VT     ++S Y+R       +  AR++FD +P ++  +W 
Sbjct: 164 DEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWT 223

Query: 269 AMIAAYVQRGQIEEAARLFIEMPER-NPVSWTTMIDGYVRIAKLDEA----RRL------ 317
            M+  YV+ G  +    L   M E    V++  MI GYV      EA    RR+      
Sbjct: 224 TMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIE 283

Query: 318 LDQMPYKNIAAQTA---------MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
           LD+  Y ++    A          +  YV   R ++ +  FD          N ++  Y 
Sbjct: 284 LDEFTYPSVIRACANARLLQLGKQVHAYVL--RREDFSFHFD----------NSLVTLYY 331

Query: 369 QCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
           +CG+ +EA  +F +M  KD+V+WN +++GY     + +A  IF+EM K +N +SW  +IS
Sbjct: 332 KCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEM-KEKNILSWMIMIS 390

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
           G  +N F  + LK+F  M +EG +      + A+ +CA L A   G+Q H   +K G+ +
Sbjct: 391 GLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDS 450

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
            L  GN+LITMYAKCG ++ A+ +F+    +D +SWN+LIA    +G+  EA+ ++EEM+
Sbjct: 451 SLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEML 510

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
            +G+ PD +TF+ VL+ACSH GLVD G K F  M  VY I P  +HYA +IDLL R+G+ 
Sbjct: 511 KKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKF 570

Query: 609 DEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMH 668
            EA  +++ +  KP A IW  LL  CR+H N++LG IA +KL  L P+    Y LLSNM+
Sbjct: 571 SEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMY 630

Query: 669 AEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLA 728
           A  G+W+EV +VR  M   G +K+  CSWIE++ Q+HTFL  D        +   L+ L 
Sbjct: 631 AATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYKYLQDLG 690

Query: 729 AQIR 732
            ++R
Sbjct: 691 KEMR 694



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 155/588 (26%), Positives = 268/588 (45%), Gaps = 109/588 (18%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP--QRN 76
           N+ I    KS  ++ A ++F ++S+ + +   +M+S Y  +G +  AR +FE+ P   R+
Sbjct: 53  NRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRD 112

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFD 132
            V +N+MI G+ HN+    A  LF KM    F+PD F++A ++       + EK    F 
Sbjct: 113 TVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQFH 172

Query: 133 LLPNKED----TACWNAMVAGYAKIGN----YNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
               K      T+  NA+V+ Y++  +     + A+K+ D +P K+  SW +M++GY KN
Sbjct: 173 AAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKN 232

Query: 185 GEMHLASKFFEAMEER-DVVSWNLMLDGYVELDDLDSAWKFFQKIPE------------- 230
           G   L  +  + M+E   +V++N M+ GYV       A +  +++               
Sbjct: 233 GCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSV 292

Query: 231 -------------QNVVSWV------------TMLSGYARNGRMLEARRLFDQMPIRNVV 265
                        + V ++V            ++++ Y + G+  EAR +F++MP +++V
Sbjct: 293 IRACANARLLQLGKQVHAYVLRREDFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLV 352

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           +WNA+++ YV  G I EA  +F EM E+N +SW  MI G       +E  +L   M  + 
Sbjct: 353 SWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREG 412

Query: 326 IAAQTAMISGYVQNKRMDEA---NQIFD----KIG-THDVVCWNVMIKGYAQCGRMDEAI 377
                   SG +++  +  A    Q F     KIG    +   N +I  YA+CG ++EA 
Sbjct: 413 FEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQ 472

Query: 378 NLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHL 437
            +FR M   D V+WN +IA   Q     +AV ++EEM K+                    
Sbjct: 473 QVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKK-------------------- 512

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV----NDLFVG 493
                       G + D  T    L+AC+H   +  GR+  + ++++ Y      D +  
Sbjct: 513 ------------GIRPDRITFLTVLTACSHAGLVDQGRKYFN-SMETVYRIPPGADHYA- 558

Query: 494 NSLITMYAKCGRIQNAE-----LLFKDADPVDVISWNSLIAGYAINGN 536
             LI +  + G+   AE     L FK    +    W +L++G  ++GN
Sbjct: 559 -RLIDLLCRSGKFSEAESIIESLPFKPTAEI----WEALLSGCRVHGN 601



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/389 (22%), Positives = 185/389 (47%), Gaps = 54/389 (13%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTY---NSMISAYAKNGRVNDARKLFEQMPQR 75
           N ++ QLGK        ++ + + ++   ++   NS+++ Y K G+ N+AR +FE+MP +
Sbjct: 298 NARLLQLGK--------QVHAYVLRREDFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAK 349

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           +LVSWN++++GY+ +  + EA+ +F +M   ++ SW +MI+     G  E+  +LF  + 
Sbjct: 350 DLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMK 409

Query: 136 NKEDTAC---WNAMVAGYAKIGNYNEAK----KLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
            +    C   ++  +   A +G Y   +    +L+      ++ + N++++ Y K G + 
Sbjct: 410 REGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVE 469

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVE----LDDLDSAWKFFQKIPEQNVVSWVTMLSGYA 244
            A + F  M   D VSWN ++    +    ++ +D   +  +K    + ++++T+L+  +
Sbjct: 470 EAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACS 529

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDG 304
             G + + R+ F           N+M   Y      +  ARL               ID 
Sbjct: 530 HAGLVDQGRKYF-----------NSMETVYRIPPGADHYARL---------------IDL 563

Query: 305 YVRIAKLDEARRLLDQMPYKNIAAQ-TAMISGYVQNKRMD----EANQIFDKIGTHDVVC 359
             R  K  EA  +++ +P+K  A    A++SG   +  M+     A+++F  I  HD   
Sbjct: 564 LCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGT- 622

Query: 360 WNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
           + ++   YA  G+ +E   + + M ++ +
Sbjct: 623 YMLLSNMYAATGQWEEVARVRKLMRDRGV 651



 Score = 46.2 bits (108), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 2/99 (2%)

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
           +LQL R +H   I  G+     + N LI +Y K   +  A  LF +    D I+  ++++
Sbjct: 29  SLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVS 88

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
           GY  +G+   A  +FEE  +     D V +  +++  SH
Sbjct: 89  GYCASGDIALARSVFEETPVS--MRDTVMYNAMITGFSH 125


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 236/783 (30%), Positives = 405/783 (51%), Gaps = 79/783 (10%)

Query: 20  KKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVS 79
           +K  ++G+  R+ E +   +Q    + V    +I+ Y+  G  +D+R +F+++ ++NL  
Sbjct: 11  RKDIEVGR--RLHEMVSASTQFCN-DFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQ 67

Query: 80  WNSMIAGYLHNDKVKEARELFDKMF-----RPDLFSWALMITCYTRKGELEKARELFDLL 134
           WN++++ Y  N+  ++A  +F ++      +PD F+   +I       +L   + +  + 
Sbjct: 68  WNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMA 127

Query: 135 PNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
              +   D    NA++A Y K G   EA K+ + MP +N+VSWNS++ G+++NG +  + 
Sbjct: 128 TKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESF 187

Query: 192 KFFEAM---EER---DVVSWNLMLDGYVELDDLDSAWKFFQ-----KIPEQNVVSWVTML 240
             F  M   EE    DV +   +L      +D++             + E+ +V+  +++
Sbjct: 188 NAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVN-NSLI 246

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTT 300
             Y++   + EA+ LFD+   +N+V+WN+MI  Y +    E+  R F  + +        
Sbjct: 247 DMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYARE---EDVCRTFYLLQKMQTEDAKM 303

Query: 301 MIDGYVRIAKL------DEARRLLDQMPYK-------NIAAQTAMISGYVQNKRMDEANQ 347
             D +  +  L       E + L +   Y        N     A I+ Y +   +  + +
Sbjct: 304 KADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSER 363

Query: 348 IFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQ 403
           +FD + T  V  WN ++ GYAQ     +A++L+ QM    ++ D  T  +++   ++++ 
Sbjct: 364 VFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKS 423

Query: 404 MDDAVKI-----------------------------------FEEMGKRRNTVSWNALIS 428
           +    +I                                   F+ M + R+ VSWN +I+
Sbjct: 424 LHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGM-EHRSLVSWNVMIA 482

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
           G+ QN    +A+ +F  M  +G +     + C   AC+ L+AL+LG+++H  A+K+    
Sbjct: 483 GYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTE 542

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           D+FV +S+I MYAK G I  ++ +F      DV SWN +IAGY I+G   EA++LFE+M+
Sbjct: 543 DIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKML 602

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
             G+ PD  TF G+L ACSH GLV+ GL+ F  M  ++ IEP +EHY C++D+L RAGR+
Sbjct: 603 RLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRI 662

Query: 609 DEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMH 668
           D+A  +++ M   P++ IW +LL +CR+H N+ LG     KL ELEP+K   Y L+SN+ 
Sbjct: 663 DDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLF 722

Query: 669 AEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLA 728
           A +G+WD+V +VR  M+  G QK  GCSWIEV  ++H FL GD       E+  T + L 
Sbjct: 723 AGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLE 782

Query: 729 AQI 731
            +I
Sbjct: 783 VKI 785



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 157/628 (25%), Positives = 276/628 (43%), Gaps = 109/628 (17%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S VF  N  I   GK G VEEA+K+F  M ++N V++NS+I  +++NG + ++   F +M
Sbjct: 134 SDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREM 193

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD 132
               LV   S                     F PD+ +   ++     + ++EK   +  
Sbjct: 194 ----LVGEES---------------------FVPDVATLVTVLPVCAGEEDIEKGMAVHG 228

Query: 133 L---LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           L   L   E+    N+++  Y+K    +EA+ L D    KNIVSWNSM+ GY +  ++  
Sbjct: 229 LAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCR 288

Query: 190 ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKF--FQKIPEQNVVSWV---------- 237
                + M+  D     +  D +  L+ L    +    Q + E +  SW           
Sbjct: 289 TFYLLQKMQTEDA---KMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVA 345

Query: 238 -TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER--N 294
              ++ Y R G +  + R+FD M  + V +WNA++  Y Q     +A  L+++M +   +
Sbjct: 346 NAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLD 405

Query: 295 PVSWT--TMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQI 348
           P  +T  +++    R+  L     +        +A       +++S Y+   +   A  +
Sbjct: 406 PDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVL 465

Query: 349 FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN----------------------- 385
           FD +    +V WNVMI GY+Q G  DEAINLFRQM++                       
Sbjct: 466 FDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSAL 525

Query: 386 ----------------KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
                           +DI   +++I  YA+   +  + +IF+ + + ++  SWN +I+G
Sbjct: 526 RLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRL-REKDVASWNVIIAG 584

Query: 430 FLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ-------IHHLAI 482
           +  +    +AL++F  M + G K D  T    L AC+H   ++ G +       +H++  
Sbjct: 585 YGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEP 644

Query: 483 KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD--ADPVDVISWNSLIAGYAINGNATEA 540
           K  +         ++ M  + GRI +A  L ++   DP D   W+SL++   I+GN    
Sbjct: 645 KLEHY------TCVVDMLGRAGRIDDALRLIEEMPGDP-DSRIWSSLLSSCRIHGNLGLG 697

Query: 541 IKLFEEMV-MEGVAPDPVTFIGVLSACS 567
            K+  +++ +E   P+    I  L A S
Sbjct: 698 EKVANKLLELEPEKPENYVLISNLFAGS 725



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 87/184 (47%), Gaps = 15/184 (8%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F  +  I    K G +  + +IF ++ +K+  ++N +I+ Y  +GR  +A +LFE+M +
Sbjct: 544 IFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLR 603

Query: 75  RNLVSWNSMIAGYL----HNDKVKEARELFDKMF-----RPDLFSWALMITCYTRKGELE 125
             L   +    G L    H   V++  E F++M       P L  +  ++    R G ++
Sbjct: 604 LGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRID 663

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYN----EAKKLLDAMPSK--NIVSWNSMLS 179
            A  L + +P   D+  W+++++     GN       A KLL+  P K  N V  +++ +
Sbjct: 664 DALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFA 723

Query: 180 GYTK 183
           G  K
Sbjct: 724 GSGK 727



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 4/117 (3%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSG-YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVD 520
           L AC     +++GR++H +   S  + ND  +   +ITMY+ CG   ++ ++F      +
Sbjct: 5   LQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKN 64

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMV-MEGVAPDPVTFIGVLSACSHVGLVDGGL 576
           +  WN++++ Y  N    +A+ +F E++ +    PD  T   V+ AC+  GL+D GL
Sbjct: 65  LFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACA--GLLDLGL 119


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/587 (33%), Positives = 329/587 (56%), Gaps = 32/587 (5%)

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLML 209
           G++  A++L D +P  N+  WN+M+ GY++     L    +  M  R    D  ++  + 
Sbjct: 66  GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 125

Query: 210 DGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
            G+     L+   +    + +     NV     ++  Y   G++  AR +FD  P  +V+
Sbjct: 126 KGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVI 185

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
            WN +I+AY + G+ EE+ RLF+ M ++  +  T  +     +  L    +L D    K 
Sbjct: 186 TWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTL-----VLVLSACSKLKDLRTGKK 240

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
           + +       YV+N ++ E+N + +          N MI  YA CG MD A+ +FR M N
Sbjct: 241 VHS-------YVKNCKV-ESNLVLE----------NAMIDMYADCGEMDSALGIFRSMNN 282

Query: 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVL 445
           +DI++W T+++G+  + ++D A   F++M ++ + VSW A+I G++++    +AL++F  
Sbjct: 283 RDIISWTTIVSGFTNLGEIDVARNYFDKMPEK-DYVSWTAMIDGYIRSNRFKEALELFRN 341

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
           M     K D  T+   L+ACAHL AL+LG  I     ++   NDLFV N+LI MY KCG 
Sbjct: 342 MQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGD 401

Query: 506 IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565
           +  AE +F++    D  +W ++I G A+NG+  +A+ +F  M+   + PD +T+IGVLSA
Sbjct: 402 VDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSA 461

Query: 566 CSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAG 625
           C+H GLVD G K F  MT  + IEP + HY C++DLL+RAGRL EA+E+++ M IK N+ 
Sbjct: 462 CTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSI 521

Query: 626 IWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685
           +WG LL  CR+++   +  + V+++ ELEP   + Y LL N++A   RW+++ ++R  M 
Sbjct: 522 VWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMM 581

Query: 686 GSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
             G +K PGCS IE+  ++H F++GD    +T  I   L  +   ++
Sbjct: 582 DKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLK 628



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/431 (25%), Positives = 200/431 (46%), Gaps = 64/431 (14%)

Query: 60  GRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMI 115
           G    AR+LF+++P+ NL  WN+MI GY   D  +    L+ +M R    PD +++  + 
Sbjct: 66  GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 125

Query: 116 TCYTRK-----------------------------------GELEKARELFDLLPNKEDT 140
             +TR                                    G+L+ AR +FD+ P K D 
Sbjct: 126 KGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCP-KADV 184

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASKFFEA 196
             WN +++ Y K+G + E+++L   M  K +    V+   +LS  +K  ++    K    
Sbjct: 185 ITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSY 244

Query: 197 ME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA 252
           ++    E ++V  N M+D Y +  ++DSA   F+ +  ++++SW T++SG+   G +  A
Sbjct: 245 VKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVA 304

Query: 253 RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWT--TMIDGYVRI 308
           R  FD+MP ++ V+W AMI  Y++  + +EA  LF  M   N  P  +T  +++     +
Sbjct: 305 RNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHL 364

Query: 309 AKLDEA---RRLLDQMPYKN-IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMI 364
             L+     R  +D+   KN +  + A+I  Y +   +D+A  IF ++   D   W  MI
Sbjct: 365 GALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMI 424

Query: 365 KGYAQCGRMDEAINLFRQMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEM----GK 416
            G A  G  ++A+++F  M+   I    +T+  +++       +D   K F  M    G 
Sbjct: 425 VGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGI 484

Query: 417 RRNTVSWNALI 427
             N   +  L+
Sbjct: 485 EPNIAHYGCLV 495



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 197/397 (49%), Gaps = 25/397 (6%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF-- 100
           Q N   + +++  Y   G+++ AR +F+  P+ ++++WN +I+ Y    K +E+R LF  
Sbjct: 150 QYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLV 209

Query: 101 --DKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGN 155
             DK   P   +  L+++  ++  +L   +++   + N   + +    NAM+  YA  G 
Sbjct: 210 MEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGE 269

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
            + A  +  +M +++I+SW +++SG+T  GE+ +A  +F+ M E+D VSW  M+DGY+  
Sbjct: 270 MDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRS 329

Query: 216 DDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEA---RRLFDQMPIRN-VVAW 267
           +    A + F+ +   NV     + V++L+  A  G +      R   D+  I+N +   
Sbjct: 330 NRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVR 389

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
           NA+I  Y + G +++A  +F EM +R+  +WT MI G       ++A  +   M   +I 
Sbjct: 390 NALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASIL 449

Query: 328 AQ----TAMISGYVQNKRMDEANQIFDKIGTH-----DVVCWNVMIKGYAQCGRMDEAIN 378
                   ++S       +D+  + F ++ +      ++  +  ++   A+ GR+ EA  
Sbjct: 450 PDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYE 509

Query: 379 LFRQM-VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           +   M +  + + W  ++AG    R+ D A  + +++
Sbjct: 510 VIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQI 546



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 156/329 (47%), Gaps = 20/329 (6%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           +N  I      G ++ A+ IF  M+ ++ +++ +++S +   G ++ AR  F++MP+++ 
Sbjct: 257 ENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDY 316

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKA---REL 130
           VSW +MI GY+ +++ KEA ELF  M     +PD F+   ++T     G LE     R  
Sbjct: 317 VSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTY 376

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
            D    K D    NA++  Y K G+ ++A+ +   M  ++  +W +M+ G   NG    A
Sbjct: 377 IDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKA 436

Query: 191 SKFFEAMEE----RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ-----NVVSWVTMLS 241
              F  M +     D +++  +L        +D   K+F ++  Q     N+  +  ++ 
Sbjct: 437 LDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVD 496

Query: 242 GYARNGRMLEARRLFDQMPIR-NVVAWNAMIAA---YVQRGQIEEAARLFIEMPERNPVS 297
             AR GR+ EA  + + MPI+ N + W A++A    Y +    E   +  +E+   N   
Sbjct: 497 LLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAV 556

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
           +  + + Y    + ++ R L   M  K I
Sbjct: 557 YVLLCNIYAACKRWNDLRELRQMMMDKGI 585



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 186/424 (43%), Gaps = 69/424 (16%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR------------- 75
           G+++ A  +F    + + +T+N +ISAY K G+  ++R+LF  M  +             
Sbjct: 167 GQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVL 226

Query: 76  --------------------------NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF 109
                                     NLV  N+MI  Y    ++  A  +F  M   D+ 
Sbjct: 227 SACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDII 286

Query: 110 SWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK 169
           SW  +++ +T  GE++ AR  FD +P K D   W AM+ GY +   + EA +L   M + 
Sbjct: 287 SWTTIVSGFTNLGEIDVARNYFDKMPEK-DYVSWTAMIDGYIRSNRFKEALELFRNMQAT 345

Query: 170 NI----VSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSA 221
           N+     +  S+L+     G + L       ++    + D+   N ++D Y +  D+D A
Sbjct: 346 NVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKA 405

Query: 222 WKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM----PIRNVVAWNAMIAAYVQR 277
              F+++ +++  +W  M+ G A NG   +A  +F  M     + + + +  +++A    
Sbjct: 406 ESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHT 465

Query: 278 GQIEEAARLFIEMP-----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTA 331
           G +++  + F+ M      E N   +  ++D   R  +L EA  +++ MP K N     A
Sbjct: 466 GLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGA 525

Query: 332 MISGYVQNKRMDEANQIFDKI-------GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
           +++G    +  D A  +  +I       G   V+  N+    YA C R ++   L + M+
Sbjct: 526 LLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNI----YAACKRWNDLRELRQMMM 581

Query: 385 NKDI 388
           +K I
Sbjct: 582 DKGI 585



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 74/144 (51%), Gaps = 9/144 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F +N  I    K G V++A  IF +MSQ++  T+ +MI   A NG    A  +F  M +
Sbjct: 386 LFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLK 445

Query: 75  RNL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELE 125
            ++    +++  +++   H   V + R+ F +M       P++  +  ++    R G L+
Sbjct: 446 ASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLK 505

Query: 126 KARELFDLLPNKEDTACWNAMVAG 149
           +A E+ + +P K ++  W A++AG
Sbjct: 506 EAYEVIENMPIKANSIVWGALLAG 529


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/587 (33%), Positives = 329/587 (56%), Gaps = 32/587 (5%)

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLML 209
           G++  A++L D +P  N+  WN+M+ GY++     L    +  M  R    D  ++  + 
Sbjct: 87  GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 146

Query: 210 DGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
            G+     L+   +    + +     NV     ++  Y   G++  AR +FD  P  +V+
Sbjct: 147 KGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVI 206

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
            WN +I+AY + G+ EE+ RLF+ M ++  +  T  +     +  L    +L D    K 
Sbjct: 207 TWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTL-----VLVLSACSKLKDLRTGKK 261

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
           + +       YV+N ++ E+N + +          N MI  YA CG MD A+ +FR M N
Sbjct: 262 VHS-------YVKNCKV-ESNLVLE----------NAMIDMYADCGEMDSALGIFRSMNN 303

Query: 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVL 445
           +DI++W T+++G+  + ++D A   F++M ++ + VSW A+I G++++    +AL++F  
Sbjct: 304 RDIISWTTIVSGFTNLGEIDVARNYFDKMPEK-DYVSWTAMIDGYIRSNRFKEALELFRN 362

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
           M     K D  T+   L+ACAHL AL+LG  I     ++   NDLFV N+LI MY KCG 
Sbjct: 363 MQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGD 422

Query: 506 IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565
           +  AE +F++    D  +W ++I G A+NG+  +A+ +F  M+   + PD +T+IGVLSA
Sbjct: 423 VDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSA 482

Query: 566 CSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAG 625
           C+H GLVD G K F  MT  + IEP + HY C++DLL+RAGRL EA+E+++ M IK N+ 
Sbjct: 483 CTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSI 542

Query: 626 IWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685
           +WG LL  CR+++   +  + V+++ ELEP   + Y LL N++A   RW+++ ++R  M 
Sbjct: 543 VWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMM 602

Query: 686 GSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
             G +K PGCS IE+  ++H F++GD    +T  I   L  +   ++
Sbjct: 603 DKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLK 649



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 113/465 (24%), Positives = 208/465 (44%), Gaps = 96/465 (20%)

Query: 60  GRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMI 115
           G    AR+LF+++P+ NL  WN+MI GY   D  +    L+ +M R    PD +++  + 
Sbjct: 87  GDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLF 146

Query: 116 TCYTRK-----------------------------------GELEKARELFDLLPNKEDT 140
             +TR                                    G+L+ AR +FD+ P K D 
Sbjct: 147 KGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCP-KADV 205

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASKFFEA 196
             WN +++ Y K+G + E+++L   M  K +    V+   +LS  +K  ++    K    
Sbjct: 206 ITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSY 265

Query: 197 ME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA 252
           ++    E ++V  N M+D Y +  ++DSA   F+ +  ++++SW T++SG+   G +  A
Sbjct: 266 VKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVA 325

Query: 253 RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWT--TMIDGYVRI 308
           R  FD+MP ++ V+W AMI  Y++  + +EA  LF  M   N  P  +T  +++     +
Sbjct: 326 RNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHL 385

Query: 309 AKLDEA---RRLLDQMPYKN-IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMI 364
             L+     R  +D+   KN +  + A+I  Y +   +D+A  IF ++   D   W  MI
Sbjct: 386 GALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMI 445

Query: 365 KGYAQCGRMDEAINLFRQM----------------------------------------V 384
            G A  G  ++A+++F  M                                        +
Sbjct: 446 VGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGI 505

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
             +I  +  ++   A+  ++ +A ++ E M  + N++ W AL++G
Sbjct: 506 EPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAG 550



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 197/397 (49%), Gaps = 25/397 (6%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF-- 100
           Q N   + +++  Y   G+++ AR +F+  P+ ++++WN +I+ Y    K +E+R LF  
Sbjct: 171 QYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLV 230

Query: 101 --DKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGN 155
             DK   P   +  L+++  ++  +L   +++   + N   + +    NAM+  YA  G 
Sbjct: 231 MEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGE 290

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
            + A  +  +M +++I+SW +++SG+T  GE+ +A  +F+ M E+D VSW  M+DGY+  
Sbjct: 291 MDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRS 350

Query: 216 DDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEA---RRLFDQMPIRN-VVAW 267
           +    A + F+ +   NV     + V++L+  A  G +      R   D+  I+N +   
Sbjct: 351 NRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVR 410

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
           NA+I  Y + G +++A  +F EM +R+  +WT MI G       ++A  +   M   +I 
Sbjct: 411 NALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASIL 470

Query: 328 AQ----TAMISGYVQNKRMDEANQIFDKIGTH-----DVVCWNVMIKGYAQCGRMDEAIN 378
                   ++S       +D+  + F ++ +      ++  +  ++   A+ GR+ EA  
Sbjct: 471 PDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYE 530

Query: 379 LFRQM-VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           +   M +  + + W  ++AG    R+ D A  + +++
Sbjct: 531 VIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQI 567



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 156/329 (47%), Gaps = 20/329 (6%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           +N  I      G ++ A+ IF  M+ ++ +++ +++S +   G ++ AR  F++MP+++ 
Sbjct: 278 ENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDY 337

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKA---REL 130
           VSW +MI GY+ +++ KEA ELF  M     +PD F+   ++T     G LE     R  
Sbjct: 338 VSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTY 397

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
            D    K D    NA++  Y K G+ ++A+ +   M  ++  +W +M+ G   NG    A
Sbjct: 398 IDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKA 457

Query: 191 SKFFEAMEE----RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ-----NVVSWVTMLS 241
              F  M +     D +++  +L        +D   K+F ++  Q     N+  +  ++ 
Sbjct: 458 LDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVD 517

Query: 242 GYARNGRMLEARRLFDQMPIR-NVVAWNAMIAA---YVQRGQIEEAARLFIEMPERNPVS 297
             AR GR+ EA  + + MPI+ N + W A++A    Y +    E   +  +E+   N   
Sbjct: 518 LLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAV 577

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
           +  + + Y    + ++ R L   M  K I
Sbjct: 578 YVLLCNIYAACKRWNDLRELRQMMMDKGI 606



 Score =  119 bits (298), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 186/424 (43%), Gaps = 69/424 (16%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR------------- 75
           G+++ A  +F    + + +T+N +ISAY K G+  ++R+LF  M  +             
Sbjct: 188 GQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVL 247

Query: 76  --------------------------NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF 109
                                     NLV  N+MI  Y    ++  A  +F  M   D+ 
Sbjct: 248 SACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDII 307

Query: 110 SWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK 169
           SW  +++ +T  GE++ AR  FD +P K D   W AM+ GY +   + EA +L   M + 
Sbjct: 308 SWTTIVSGFTNLGEIDVARNYFDKMPEK-DYVSWTAMIDGYIRSNRFKEALELFRNMQAT 366

Query: 170 NI----VSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSA 221
           N+     +  S+L+     G + L       ++    + D+   N ++D Y +  D+D A
Sbjct: 367 NVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKA 426

Query: 222 WKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM----PIRNVVAWNAMIAAYVQR 277
              F+++ +++  +W  M+ G A NG   +A  +F  M     + + + +  +++A    
Sbjct: 427 ESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHT 486

Query: 278 GQIEEAARLFIEMP-----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTA 331
           G +++  + F+ M      E N   +  ++D   R  +L EA  +++ MP K N     A
Sbjct: 487 GLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGA 546

Query: 332 MISGYVQNKRMDEANQIFDKI-------GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
           +++G    +  D A  +  +I       G   V+  N+    YA C R ++   L + M+
Sbjct: 547 LLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNI----YAACKRWNDLRELRQMMM 602

Query: 385 NKDI 388
           +K I
Sbjct: 603 DKGI 606



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 74/144 (51%), Gaps = 9/144 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F +N  I    K G V++A  IF +MSQ++  T+ +MI   A NG    A  +F  M +
Sbjct: 407 LFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLK 466

Query: 75  RNL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELE 125
            ++    +++  +++   H   V + R+ F +M       P++  +  ++    R G L+
Sbjct: 467 ASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLK 526

Query: 126 KARELFDLLPNKEDTACWNAMVAG 149
           +A E+ + +P K ++  W A++AG
Sbjct: 527 EAYEVIENMPIKANSIVWGALLAG 550


>gi|302795382|ref|XP_002979454.1| hypothetical protein SELMODRAFT_111075 [Selaginella moellendorffii]
 gi|300152702|gb|EFJ19343.1| hypothetical protein SELMODRAFT_111075 [Selaginella moellendorffii]
          Length = 689

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 224/663 (33%), Positives = 349/663 (52%), Gaps = 25/663 (3%)

Query: 41  MSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF 100
           M Q  +V    +I A A+ G   +A  L+  +P+++  S N+MI  Y     V +AR +F
Sbjct: 1   MPQVGSVAATVVILALAEEGHFAEAENLYCFIPEKDTASMNAMINLYGRTGDVSQARTVF 60

Query: 101 DKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
           D +  PD+ SW  M+      G L+ A+ LF  +P + D  CWN M+ G+A  G+   A 
Sbjct: 61  DAIKNPDVVSWTSMLQANALSGHLQDAKNLFRAMPQRNDY-CWNTMLNGFASHGDVTTAC 119

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM--EERDVVSWNLMLDGYVELDDL 218
            +L  MP  N+VSW  ML+ Y + G + LA   F+++    RDVV+WN++         +
Sbjct: 120 LILQLMPQHNVVSWTIMLTAYAERGHLALALSVFDSVPARTRDVVTWNVLAQALAGNFHV 179

Query: 219 DSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
           D A    +K+P  ++V+  +M++ +A+ G    AR LF  MP RNVV+W+A I AY Q G
Sbjct: 180 DEAMLVLEKMPHHSLVAVNSMITAHAQAGHAHVARHLFKNMPARNVVSWSATIGAYAQAG 239

Query: 279 QIEEAARL----FIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA----AQT 330
            I E+  L     +E  + N V+   ++ G      L   R +  Q+     A     Q 
Sbjct: 240 YIPESLELVRAMLLEGVKPNEVTLVAILTGCTP-EHLAIGRAVHQQIARSGDARDRFVQN 298

Query: 331 AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM------- 383
            +I  Y +   + EA +IFD I   +V  WN+MI  Y   G  D A++L+++M       
Sbjct: 299 LLIQMYGKCGAVQEARKIFDAIADKNVFSWNIMIGAYVNNGLDDHALDLYKRMAPALPSA 358

Query: 384 --VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALK 441
             +  + V    +I  ++    +  A + F  +   ++ V W ++I+ F +N   + ALK
Sbjct: 359 LGLETNPVVATALINAFSAAGSLLSAEEAFHCV-DCKDAVCWTSMITAFARNGDGIGALK 417

Query: 442 IFVLMTQEGKKADHS---TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
            F  M  EG   D     T    L+AC  +  ++ GR+ H     SG+     V NSL++
Sbjct: 418 TFSRMNLEGIFPDEICILTYVTLLAACGSVGDVEEGRRAHAKITASGFEAVPVVANSLLS 477

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           MY+K GR   A+++F+     +  ++NS+I+    +G   EA+ LF  M ++GV P+ VT
Sbjct: 478 MYSKFGRCDEAKVVFEKIQRKETGAFNSMISALTEHGKFEEALGLFPLMDIDGVRPNDVT 537

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
           FI V  AC+H GLVD   +LF CM E   IEP  +H  C++DLL RAG+L+EA + +  M
Sbjct: 538 FINVFLACTHAGLVDKAWELFLCMVEECGIEPSEKHCGCVVDLLGRAGKLEEAEKFIANM 597

Query: 619 KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVE 678
           + +P A IW TLLGAC++H +I  GR A EK  E++P  +  Y  L+++   AG  DE +
Sbjct: 598 EARPGAVIWMTLLGACKLHGDIDRGRFAAEKAIEIDPADSGPYVALASIFMAAGMKDEAD 657

Query: 679 KVR 681
           K+R
Sbjct: 658 KLR 660



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 152/631 (24%), Positives = 287/631 (45%), Gaps = 67/631 (10%)

Query: 17  NQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRN 76
           + N  I   G++G V +A  +F  +   + V++ SM+ A A +G + DA+ LF  MPQRN
Sbjct: 39  SMNAMINLYGRTGDVSQARTVFDAIKNPDVVSWTSMLQANALSGHLQDAKNLFRAMPQRN 98

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN 136
              WN+M+ G+  +  V  A  +   M + ++ SW +M+T Y  +G L  A  +FD +P 
Sbjct: 99  DYCWNTMLNGFASHGDVTTACLILQLMPQHNVVSWTIMLTAYAERGHLALALSVFDSVPA 158

Query: 137 K-EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
           +  D   WN +    A   + +EA  +L+ MP  ++V+ NSM++ + + G  H+A   F+
Sbjct: 159 RTRDVVTWNVLAQALAGNFHVDEAMLVLEKMPHHSLVAVNSMITAHAQAGHAHVARHLFK 218

Query: 196 AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSG--------- 242
            M  R+VVSW+  +  Y +   +  + +  + +     + N V+ V +L+G         
Sbjct: 219 NMPARNVVSWSATIGAYAQAGYIPESLELVRAMLLEGVKPNEVTLVAILTGCTPEHLAIG 278

Query: 243 -------------------------YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR 277
                                    Y + G + EAR++FD +  +NV +WN MI AYV  
Sbjct: 279 RAVHQQIARSGDARDRFVQNLLIQMYGKCGAVQEARKIFDAIADKNVFSWNIMIGAYVNN 338

Query: 278 GQIEEAARLFIEMP---------ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA 328
           G  + A  L+  M          E NPV  T +I+ +     L  A      +  K+   
Sbjct: 339 GLDDHALDLYKRMAPALPSALGLETNPVVATALINAFSAAGSLLSAEEAFHCVDCKDAVC 398

Query: 329 QTAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGR---MDEAINLFR 381
            T+MI+ + +N     A + F ++       D +C    +   A CG    ++E      
Sbjct: 399 WTSMITAFARNGDGIGALKTFSRMNLEGIFPDEICILTYVTLLAACGSVGDVEEGRRAHA 458

Query: 382 QMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHL 437
           ++         V  N++++ Y++  + D+A  +FE++ +R+ T ++N++IS   ++    
Sbjct: 459 KITASGFEAVPVVANSLLSMYSKFGRCDEAKVVFEKI-QRKETGAFNSMISALTEHGKFE 517

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV--NDLFVGNS 495
           +AL +F LM  +G + +  T      AC H   +    ++    ++   +  ++   G  
Sbjct: 518 EALGLFPLMDIDGVRPNDVTFINVFLACTHAGLVDKAWELFLCMVEECGIEPSEKHCG-C 576

Query: 496 LITMYAKCGRIQNAELLFK--DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA 553
           ++ +  + G+++ AE      +A P  VI W +L+    ++G+     +   E  +E   
Sbjct: 577 VVDLLGRAGKLEEAEKFIANMEARPGAVI-WMTLLGACKLHGDIDRG-RFAAEKAIEIDP 634

Query: 554 PDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
            D   ++ + S     G+ D   KL + ++E
Sbjct: 635 ADSGPYVALASIFMAAGMKDEADKLRKRLSE 665



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 138/333 (41%), Gaps = 37/333 (11%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP-- 73
           F QN  I   GK G V+EA KIF  ++ KN  ++N MI AY  NG  + A  L+++M   
Sbjct: 295 FVQNLLIQMYGKCGAVQEARKIFDAIADKNVFSWNIMIGAYVNNGLDDHALDLYKRMAPA 354

Query: 74  -------QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEK 126
                  + N V   ++I  +     +  A E F  +   D   W  MIT + R G+   
Sbjct: 355 LPSALGLETNPVVATALINAFSAAGSLLSAEEAFHCVDCKDAVCWTSMITAFARNGDGIG 414

Query: 127 ARELFD------LLPNKEDTACWNAMVAGYAKIGNYNEAKKL--------LDAMPSKNIV 172
           A + F       + P++     +  ++A    +G+  E ++          +A+P    V
Sbjct: 415 ALKTFSRMNLEGIFPDEICILTYVTLLAACGSVGDVEEGRRAHAKITASGFEAVP----V 470

Query: 173 SWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP--- 229
             NS+LS Y+K G    A   FE ++ ++  ++N M+    E    + A   F  +    
Sbjct: 471 VANSLLSMYSKFGRCDEAKVVFEKIQRKETGAFNSMISALTEHGKFEEALGLFPLMDIDG 530

Query: 230 -EQNVVSWVTMLSGYARNGRMLEARRLF----DQMPIRNVVAWNAMIAAYVQR-GQIEEA 283
              N V+++ +       G + +A  LF    ++  I         +   + R G++EEA
Sbjct: 531 VRPNDVTFINVFLACTHAGLVDKAWELFLCMVEECGIEPSEKHCGCVVDLLGRAGKLEEA 590

Query: 284 ARLFIEMPER-NPVSWTTMIDGYVRIAKLDEAR 315
            +    M  R   V W T++        +D  R
Sbjct: 591 EKFIANMEARPGAVIWMTLLGACKLHGDIDRGR 623


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/644 (33%), Positives = 344/644 (53%), Gaps = 87/644 (13%)

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI----PE 230
           +S++  Y +NG +  A + F+ M  +D V WN+ML+G+V+  + +SA K F+ +     +
Sbjct: 11  SSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNCQTK 70

Query: 231 QNVVSWVTMLS-----------------------------------GYARNGRMLEARRL 255
            N +++ ++LS                                    Y++ G++ +A +L
Sbjct: 71  PNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKL 130

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKL 311
           F+ MP  NVV WN MIA +VQ G ++EA+ LF EM       + +++ + +      A L
Sbjct: 131 FNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASL 190

Query: 312 DEARRLLDQMPYKNIAA----QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367
            + + +   +    IA     ++A+I  Y + + +  A +IF +    D+V    +I GY
Sbjct: 191 KQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGY 250

Query: 368 AQCGRMDEAINLFR----QMVNKDIVTWNTMIAG-------------------------- 397
              G  ++A+ +FR    + ++ + VT  +++                            
Sbjct: 251 VLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERR 310

Query: 398 ---------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
                    YA+  ++D A +IF  M   ++ V WNA+I+   QN    +A+ +F  M +
Sbjct: 311 HVGSAIMDMYAKCGRLDLAYQIFRRM-PEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGR 369

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
           EG   D  +++ ALSACA+L AL  G+ IH   IK  + +++F  ++LI MY KCG +  
Sbjct: 370 EGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSV 429

Query: 509 AELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
           A  +F      + +SWNS+IA Y  +G+   ++ LF +M+ +G+ PD VTF+ +LSAC H
Sbjct: 430 ARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGH 489

Query: 569 VGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWG 628
            G VD G++ F CMTE Y I   +EHYAC++DL  RAGRL+EAFE +K M   P+ G+WG
Sbjct: 490 AGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDDGVWG 549

Query: 629 TLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688
           TLLGACR+H N++L  +A   L +L+P+ + CY LLSN+HA+AG+W  V K+R  M+  G
Sbjct: 550 TLLGACRVHGNVELAEVASRCLLDLDPENSGCYVLLSNVHADAGQWGSVRKIRSLMKKRG 609

Query: 689 AQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            QK PG SWIEV    H F++ D     +A+I + L  L  ++R
Sbjct: 610 VQKVPGYSWIEVNKTTHMFVAADGSHPESAQIYSVLNNLLLELR 653



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 139/553 (25%), Positives = 252/553 (45%), Gaps = 69/553 (12%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           +S+I  YA+NG + DAR+LF++MP ++ V WN M+ G++   +   A ++F+ M     +
Sbjct: 11  SSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNCQTK 70

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL 162
           P+  ++A +++    +   E   +L  L+ +     D    NA+VA Y+K G  ++A KL
Sbjct: 71  PNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKL 130

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSWNLMLDGYVELDDL 218
            + MP  N+V+WN M++G+ +NG M  AS  F  M       D +++   L    E   L
Sbjct: 131 FNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASL 190

Query: 219 DSAWKFFQKIPEQNVVSWVTMLSG----YARNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
               +    I    +   V + S     Y +   +  A ++F Q    ++V   A+I+ Y
Sbjct: 191 KQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGY 250

Query: 275 VQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ- 329
           V  G   +A  +F  + E     N V+  +++     +A L+  + L   +    +  + 
Sbjct: 251 VLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERR 310

Query: 330 ---TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM--- 383
              +A++  Y +  R+D A QIF ++   D VCWN +I   +Q G+  EAI+LFRQM   
Sbjct: 311 HVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGRE 370

Query: 384 ------------------------------------VNKDIVTWNTMIAGYAQIRQMDDA 407
                                                + ++   + +I  Y +   +  A
Sbjct: 371 GLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVA 430

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLD-ALKIFVLMTQEGKKADHSTLACALSACA 466
             +F+ M + +N VSWN++I+ +  +  HL+ +L +F  M ++G + DH T    LSAC 
Sbjct: 431 RCVFDMM-REKNEVSWNSIIAAY-GSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACG 488

Query: 467 HLAALQLGRQIHHLAIKS-GYVNDLFVGNSLITMYAKCGRIQNAELLFKDA--DPVDVIS 523
           H   +  G Q      +  G    +     ++ ++ + GR+  A    K+    P D + 
Sbjct: 489 HAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDDGV- 547

Query: 524 WNSLIAGYAINGN 536
           W +L+    ++GN
Sbjct: 548 WGTLLGACRVHGN 560



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/443 (22%), Positives = 205/443 (46%), Gaps = 36/443 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  +    K G++ +A+K+F+ M   N VT+N MI+ + +NG +++A  LF +M    + 
Sbjct: 112 NALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVS 171

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKAREL 130
              +++ S +     +  +K+ +E+   + R     D+F  + +I  Y +  ++  A ++
Sbjct: 172 PDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKI 231

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKK----LLDAMPSKNIVSWNSMLSGYTKNGE 186
           F    N +   C  A+++GY   G  N+A +    LL+   S N V+  S+L        
Sbjct: 232 FKQSTNVDIVVC-TAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLAT 290

Query: 187 MHLASKFF-----EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
           ++L  +         ++ER  V   +M D Y +   LD A++ F+++PE++ V W  +++
Sbjct: 291 LNLGKELHANILKHGLDERRHVGSAIM-DMYAKCGRLDLAYQIFRRMPEKDAVCWNAIIT 349

Query: 242 GYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMP----ER 293
             ++NG+  EA  LF QM       + V+ +A ++A      +     +   M     + 
Sbjct: 350 NCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDS 409

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI- 352
              + + +ID Y +   L  AR + D M  KN  +  ++I+ Y  +  ++ +  +F K+ 
Sbjct: 410 EVFAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKML 469

Query: 353 --GTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT-----WNTMIAGYAQIRQM 404
             G   D V +  ++      G++D+ I  FR M  +  +      +  ++  + +  ++
Sbjct: 470 EDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRL 529

Query: 405 DDAVKIFEEMGKRRNTVSWNALI 427
           ++A +  + M    +   W  L+
Sbjct: 530 NEAFETIKNMPFSPDDGVWGTLL 552



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 151/335 (45%), Gaps = 26/335 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLF----E 70
           VF ++  I    K   V  A KIF Q +  + V   ++IS Y  NG  NDA ++F    E
Sbjct: 209 VFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLE 268

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL----FSWALMITCYTRKGELEK 126
           +    N V+  S++        +   +EL   + +  L       + ++  Y + G L+ 
Sbjct: 269 EKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDL 328

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP----SKNIVSWNSMLSGYT 182
           A ++F  +P K D  CWNA++   ++ G   EA  L   M     S + VS ++ LS   
Sbjct: 329 AYQIFRRMPEK-DAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACA 387

Query: 183 KNGEMH----LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
               +H    + S   +   + +V + + ++D Y +  +L  A   F  + E+N VSW +
Sbjct: 388 NLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNS 447

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
           +++ Y  +G +  +  LF +M    +    V +  +++A    GQ+++  + F  M E  
Sbjct: 448 IIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEY 507

Query: 295 PVS-----WTTMIDGYVRIAKLDEARRLLDQMPYK 324
            +      +  ++D + R  +L+EA   +  MP+ 
Sbjct: 508 GIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFS 542



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 3/135 (2%)

Query: 485 GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLF 544
           G+  D FVG+SLI +YA+ G I++A  LF      D + WN ++ G+   G    A+K+F
Sbjct: 2   GFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVF 61

Query: 545 EEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV-YAIEPLVEHYACMIDLLS 603
           E+M      P+ +TF  VLS C+   L + G +L   +    +  +PLV +   ++ + S
Sbjct: 62  EDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVAN--ALVAMYS 119

Query: 604 RAGRLDEAFEMVKGM 618
           + G+L +A ++   M
Sbjct: 120 KFGQLSDALKLFNTM 134



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 13/168 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S VF ++  I   GK G +  A  +F  M +KN V++NS+I+AY  +G +  +  LF +M
Sbjct: 409 SEVFAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKM 468

Query: 73  ----PQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGE 123
                Q + V++ ++++   H  +V +  + F  M         +  +A ++  + R G 
Sbjct: 469 LEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGR 528

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA----KKLLDAMP 167
           L +A E    +P   D   W  ++      GN   A    + LLD  P
Sbjct: 529 LNEAFETIKNMPFSPDDGVWGTLLGACRVHGNVELAEVASRCLLDLDP 576


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 224/717 (31%), Positives = 377/717 (52%), Gaps = 79/717 (11%)

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RNLV+  +    +LH D       +    F P+ +    ++  + ++G+L  AR+LFD +
Sbjct: 73  RNLVTTLTAPKPHLHVDA-----SIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEM 127

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P+K +    N M+ GY K GN +EA+ L D+M  +  V+W  ++ GY +N +   A   F
Sbjct: 128 PHK-NIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLF 186

Query: 195 EAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARN 246
             M       D VS   +L G+ E D ++   +    +     +  +V   ++L  Y + 
Sbjct: 187 IEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKT 246

Query: 247 GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE--RNPVSWTTMIDG 304
             +  A +LF+ +P R+ V +NA++  Y + G   EA  LF +M E    P  +T     
Sbjct: 247 RSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFT----- 301

Query: 305 YVRIAKLDEARRLLDQMPYK--------------NIAAQTAMISGYVQNKRMDEANQIFD 350
               A +  A   LD + +               N+    A++  Y ++ R+ EA+++F 
Sbjct: 302 ---FAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFY 358

Query: 351 KIGTHDVVCWNVMIKGYAQCGRMDEAINLF------------------------------ 380
           ++   D + +NV++  YA  GR+ E++ LF                              
Sbjct: 359 EMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDI 418

Query: 381 -RQMVNKDIVT--------WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFL 431
            RQ+ ++ IVT         N+++  YA+  +  +A +IF ++  + ++V W A+IS ++
Sbjct: 419 GRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQ-SSVPWTAMISSYV 477

Query: 432 QNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLF 491
           Q   H D LK+FV M +    AD +T A  + ACA LA+L LG+Q+H   I SGY++++F
Sbjct: 478 QKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVF 537

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
            G++L+ MYAKCG I++A  +F++    + +SWN+LI+ YA NG+    ++LFEEMV  G
Sbjct: 538 SGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSG 597

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
           + PD V+ + +L ACSH GLV+ GL+ F+ MT +Y + P  EHYA  ID+L R GR DEA
Sbjct: 598 LQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEA 657

Query: 612 FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSC-YALLSNMHAE 670
            +++  M  +P+  +W ++L +C +H+N +L + A  +L  ++  + +  Y  +SN++A 
Sbjct: 658 EKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQLFNMKVLRDAAPYVTMSNIYAA 717

Query: 671 AGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
           AG WD V KV+ +M   G +K P  SW+E+K++ H F + D    +  EI   L  L
Sbjct: 718 AGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKTHVFTANDKTHPQMREIMKKLDEL 774



 Score =  202 bits (513), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 161/615 (26%), Positives = 279/615 (45%), Gaps = 83/615 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            +  N  +    + G +  A K+F +M  KN  + N+MI  Y K+G +++AR LF+ M Q
Sbjct: 101 TYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQ 160

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAREL 130
           R  V+W  +I GY  N++ +EA  LF +M R    PD  S A +++ +T    + + R++
Sbjct: 161 RTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQV 220

Query: 131 FDL---LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
                 L         N+++  Y K  +   A +L + +P ++ V++N++L+GY+K G  
Sbjct: 221 HSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFN 280

Query: 188 HLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV----TM 239
             A   F  M+E        ++  +L   ++LDD++   +    + + N V  V     +
Sbjct: 281 REAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANAL 340

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNP 295
           L  Y+++ R++EA +LF +MP  + +++N ++  Y   G+++E+  LF E+     +R  
Sbjct: 341 LDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRN 400

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQM----PYKNIAAQTAMISGYVQNKRMDEANQIFDK 351
             + T++        LD  R++  Q         I    +++  Y +     EAN+IF  
Sbjct: 401 FPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSD 460

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAG---------- 397
           +     V W  MI  Y Q G  ++ + LF +M    +  D  T+ +++            
Sbjct: 461 LAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLTLG 520

Query: 398 -------------------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
                                    YA+   + DA+++F+EM   RN+VSWNALIS + Q
Sbjct: 521 KQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEM-PVRNSVSWNALISAYAQ 579

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ-------IHHLAIKSG 485
           N      L++F  M + G + D  +L   L AC+H   ++ G Q       I+ L  K  
Sbjct: 580 NGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKE 639

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAINGNATEAIK- 542
           +        S I M  + GR   AE L      +P D I W+S++    I+ N   A K 
Sbjct: 640 HY------ASTIDMLCRGGRFDEAEKLMAQMPFEP-DEIMWSSVLNSCGIHKNQELAKKA 692

Query: 543 ---LFEEMVMEGVAP 554
              LF   V+   AP
Sbjct: 693 ANQLFNMKVLRDAAP 707



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 183/395 (46%), Gaps = 41/395 (10%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  N  +    K  RV EA K+F +M + + ++YN +++ YA NGRV ++ +LF+++  
Sbjct: 334 VFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQF 393

Query: 75  RNLVSWNSMIAGYLH----NDKVKEARELFDKMFRPDLFSWAL----MITCYTRKGELEK 126
                 N   A  L     +  +   R++  +    D  S  L    ++  Y + GE  +
Sbjct: 394 TGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGE 453

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL----------DAMPSKNIVSWNS 176
           A  +F  L   + +  W AM++ Y + G + +  KL           DA    +IV   +
Sbjct: 454 ANRIFSDLA-IQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACA 512

Query: 177 MLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSW 236
            L+  T   ++H  S    +    +V S + ++D Y +   +  A + FQ++P +N VSW
Sbjct: 513 SLASLTLGKQLH--SHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSW 570

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIR-----NVVAWNAMIAAYVQRGQIEEAARLFIEM- 290
             ++S YA+NG      RLF++M +R     + V+  +++ A    G +EE  + F  M 
Sbjct: 571 NALISAYAQNGDGDCTLRLFEEM-VRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMT 629

Query: 291 ------PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK--NIAAQTAMIS-GYVQNKR 341
                 P++    + + ID   R  + DEA +L+ QMP++   I   + + S G  +N+ 
Sbjct: 630 RIYKLVPKKE--HYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQE 687

Query: 342 MDE--ANQIFDKIGTHDVVCWNVMIKGYAQCGRMD 374
           + +  ANQ+F+     D   +  M   YA  G  D
Sbjct: 688 LAKKAANQLFNMKVLRDAAPYVTMSNIYAAAGEWD 722



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 100/203 (49%), Gaps = 13/203 (6%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S VF+ +  +    K G +++A+++F +M  +N+V++N++ISAYA+NG  +   +LFE+M
Sbjct: 534 SNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEM 593

Query: 73  PQRNL----VSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGE 123
            +  L    VS  S++    H   V+E  + FD M R     P    +A  I    R G 
Sbjct: 594 VRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGR 653

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKK----LLDAMPSKNIVSWNSMLS 179
            ++A +L   +P + D   W++++       N   AKK    L +    ++   + +M +
Sbjct: 654 FDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQLFNMKVLRDAAPYVTMSN 713

Query: 180 GYTKNGEMHLASKFFEAMEERDV 202
            Y   GE     K  +AM ER V
Sbjct: 714 IYAAAGEWDNVGKVKKAMRERGV 736


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 238/786 (30%), Positives = 408/786 (51%), Gaps = 67/786 (8%)

Query: 9   GNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQK----NTVTYNSMISAYAKNGRVND 64
           GN      + +K ++Q   +  +   ++I + +++     +    N +I+ Y+K      
Sbjct: 50  GNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGY 109

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTR 120
           ARKL ++  + +LVSW+++I+GY  N     A   F +M     + + F+++ ++   + 
Sbjct: 110 ARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSI 169

Query: 121 KGELEKARELFDLL---PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSM 177
             +L   +++  ++     + D    N +V  YAK   + ++K+L D +P +N+VSWN++
Sbjct: 170 VKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNAL 229

Query: 178 LSGYT--------------------KNGEMHLASKFFEAMEERDV--------------- 202
            S Y                     K  E  L+S        RD                
Sbjct: 230 FSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGY 289

Query: 203 ----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
                S N ++D Y ++ DL  A   F+KI + ++VSW  +++G   +    +A  L  Q
Sbjct: 290 DWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQ 349

Query: 259 MP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAK 310
           M       N+   ++ + A    G  E   +L   +     E +      ++D Y +   
Sbjct: 350 MKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDL 409

Query: 311 LDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC 370
           L++AR   + +P K++ A  A+ISGY Q     EA  +F ++    +      +    + 
Sbjct: 410 LEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKS 469

Query: 371 GRMDEAINLFRQM--------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
               + +++ RQ+         + DI   N++I  Y +   ++DA +IFEE     + VS
Sbjct: 470 TAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEEC-TIGDLVS 528

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482
           + ++I+ + Q     +ALK+F+ M     K D    +  L+ACA+L+A + G+Q+H   +
Sbjct: 529 FTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHIL 588

Query: 483 KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIK 542
           K G+V D+F GNSL+ MYAKCG I +A   F +     ++SW+++I G A +G+  +A++
Sbjct: 589 KYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQ 648

Query: 543 LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLL 602
           LF +M+ EGV+P+ +T + VL AC+H GLV      FE M E++  +P+ EHYACMIDLL
Sbjct: 649 LFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLL 708

Query: 603 SRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYA 662
            RAG+++EA E+V  M  + NA +WG LLGA R+H++++LGR A E L  LEP+K+  + 
Sbjct: 709 GRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHV 768

Query: 663 LLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICN 722
           LL+N++A AG+W+ V +VR  M  S  +K+PG SWIEVK++++TFL GD    R+ EI  
Sbjct: 769 LLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYA 828

Query: 723 TLKTLA 728
            L  L+
Sbjct: 829 KLDELS 834


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 240/770 (31%), Positives = 400/770 (51%), Gaps = 72/770 (9%)

Query: 31  VEEAIKIFSQMSQ----KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           + EA +I +QM +     +    N +I+ Y K   V DA ++F++MP+R+++SWNS+I+ 
Sbjct: 43  LPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISC 102

Query: 87  YLHNDKVKEARELFDKM----FRPDLFSW-ALMITCYTRKGELEKARELFDLLPN---KE 138
           Y      K+A +LF++M    F P+  ++ +++  CY+   ELE  +++   +     + 
Sbjct: 103 YAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYS-PAELENGKKIHSQIIKAGYQR 161

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           D    N++++ Y K G+   A+++   +  +++VS+N+ML  Y +   +      F  M 
Sbjct: 162 DPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMS 221

Query: 199 ER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRML 250
                 D V++  +LD +     LD   +  +   E+ + S +     +++   R G + 
Sbjct: 222 SEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVD 281

Query: 251 EARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYV 306
            A++ F  +  R+VV +NA+IAA  Q G   EA   +  M       N  ++ ++++   
Sbjct: 282 SAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNA-C 340

Query: 307 RIAKLDEARRLL-----DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWN 361
             +K  EA +L+     +     ++    A+IS Y +   + +A ++F  +   D++ WN
Sbjct: 341 STSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWN 400

Query: 362 VMIKGYAQCGRMDEAINLFRQM------------------------------VNKDIVT- 390
            +I GYA+     EA+ L++QM                              +++DI+  
Sbjct: 401 AIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRS 460

Query: 391 --------WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI 442
                    N ++  Y +   + +A  +FE   + R+ +SWN++I+G  Q+  +  A K+
Sbjct: 461 GIKSNGHLANALMNMYRRCGSLMEAQNVFEGT-QARDVISWNSMIAGHAQHGSYETAYKL 519

Query: 443 FVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
           F  M  E  + D+ T A  LS C +  AL+LG+QIH    +SG   D+ +GN+LI MY +
Sbjct: 520 FQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIR 579

Query: 503 CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV-APDPVTFIG 561
           CG +Q+A  +F      DV+SW ++I G A  G   +AI+LF +M  EG   PD  TF  
Sbjct: 580 CGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTS 639

Query: 562 VLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIK 621
           +LSAC+H GLV  G ++F  M   Y + P +EHY C++ LL RA R  EA  ++  M   
Sbjct: 640 ILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFP 699

Query: 622 PNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVR 681
           P+A +W TLLGACR+H NI L   A     +L  +  + Y LLSN++A AGRWD+V K+R
Sbjct: 700 PDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIR 759

Query: 682 VSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
             MEG G +K+PG SWIEV N IH F++ D     TAEI   LK L+ ++
Sbjct: 760 RVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEM 809



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 154/592 (26%), Positives = 281/592 (47%), Gaps = 97/592 (16%)

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKK----LLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           P + D A + A++    +     EAK+    +++A    +I   N +++ Y K   +  A
Sbjct: 22  PTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDA 81

Query: 191 SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK------IPEQNVVSWVTMLS--- 241
            + F+ M  RDV+SWN ++  Y +      A++ F++      IP  N ++++++L+   
Sbjct: 82  HQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIP--NKITYISILTACY 139

Query: 242 ------------------GYARN--------------GRMLEARRLFDQMPIRNVVAWNA 269
                             GY R+              G +  AR++F  +  R+VV++N 
Sbjct: 140 SPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNT 199

Query: 270 MIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRL----LDQM 321
           M+  Y Q+  ++E   LF +M       + V++  ++D +   + LDE +R+    +++ 
Sbjct: 200 MLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEG 259

Query: 322 PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
              +I   TA+++  V+   +D A Q F  I   DVV +N +I   AQ G   EA   + 
Sbjct: 260 LNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYY 319

Query: 382 QM------VNK---------------------------------DIVTWNTMIAGYAQIR 402
           +M      +N+                                 D+   N +I+ YA+  
Sbjct: 320 RMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCG 379

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
            +  A ++F  M K R+ +SWNA+I+G+ + E   +A++++  M  EG K    T    L
Sbjct: 380 DLPKARELFYTMPK-RDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLL 438

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
           SACA+ +A   G+ IH   ++SG  ++  + N+L+ MY +CG +  A+ +F+     DVI
Sbjct: 439 SACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVI 498

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           SWNS+IAG+A +G+   A KLF+EM  E + PD +TF  VLS C +   ++ G ++   +
Sbjct: 499 SWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRI 558

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGAC 634
           TE   ++  V     +I++  R G L +A  +   ++ + +   W  ++G C
Sbjct: 559 TES-GLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHR-DVMSWTAMIGGC 608



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 121/243 (49%), Gaps = 16/243 (6%)

Query: 431 LQNEFHLDALKIFVLMTQEGK--KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
           ++NE H    +  V  T + +  + D +T    L  C     L   ++IH   +++G   
Sbjct: 1   MRNERHCGPDREDVSNTHQPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGP 60

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           D+F+ N LI MY KC  + +A  +FK+    DVISWNSLI+ YA  G   +A +LFEEM 
Sbjct: 61  DIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQ 120

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV-YAIEPLVEHYACMIDLLSRAGR 607
             G  P+ +T+I +L+AC     ++ G K+   + +  Y  +P V++   ++ +  + G 
Sbjct: 121 NAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQN--SLLSMYGKCGD 178

Query: 608 LDEAFEMVKGMKIKPNAGI-WGTLLGACRMHQNIK-----LGRIAVEKLSELEPQKTSCY 661
           L  A ++  G  I P   + + T+LG       +K      G+++ E +S   P K +  
Sbjct: 179 LPRARQVFAG--ISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGIS---PDKVTYI 233

Query: 662 ALL 664
            LL
Sbjct: 234 NLL 236


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 234/731 (32%), Positives = 380/731 (51%), Gaps = 61/731 (8%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL- 108
           N +IS Y+K  R   AR++F+++P    VSW+S++  Y +N   + A + F  M    + 
Sbjct: 41  NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVC 100

Query: 109 ---FSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDA 165
              F+  +++ C        +   +        D    NA+VA Y   G  ++A+++ + 
Sbjct: 101 CNEFALPVVLKCVPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNE 160

Query: 166 MPS-KNIVSWNSMLSGYTKNGEMHLASKFFEAM--------------------------- 197
             S +N VSWN ++S Y KN +   A + F  M                           
Sbjct: 161 ADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEA 220

Query: 198 ------------EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR 245
                        ++DV + N ++D Y+++  +D A   F+K+P+ +VVSW  ++SG   
Sbjct: 221 GRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVL 280

Query: 246 NGRMLEARRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS---- 297
           NG    A  L  QM     + NV   ++++ A    G  +   ++   M + N  S    
Sbjct: 281 NGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYI 340

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV 357
              ++D Y +   LD+AR++ D M ++++    A+ISG     R DEA  +F ++    +
Sbjct: 341 GVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGL 400

Query: 358 VCWNVMIKGYAQCGRMDEAINLFRQM--------VNKDIVTWNTMIAGYAQIRQMDDAVK 409
                 +    +     EA +  RQ+           D    N +I  Y +   + DA +
Sbjct: 401 GVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANR 460

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           +FEE     + ++  ++I+   Q +    A+K+F+ M ++G + D   L+  L+ACA L+
Sbjct: 461 VFEECSS-GDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLS 519

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
           A + G+Q+H   IK  +++D F GN+L+  YAKCG I++AEL F       V+SW+++I 
Sbjct: 520 AYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIG 579

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE 589
           G A +G+   A++LF  MV EG+ P+ +T   VL AC+H GLVD   + F  M E++ I+
Sbjct: 580 GLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGID 639

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649
              EHY+CMIDLL RAG+LD+A E+V  M  + NA IWG LLGA R+H++ +LG++A EK
Sbjct: 640 RTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEK 699

Query: 650 LSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLS 709
           L  LEP+K+  + LL+N +A AG W+EV KVR  M+ S  +K+P  SWIEVK+++HTF+ 
Sbjct: 700 LFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIV 759

Query: 710 GDPKQCRTAEI 720
           GD     T EI
Sbjct: 760 GDKSHPMTKEI 770



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 124/515 (24%), Positives = 224/515 (43%), Gaps = 87/515 (16%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQM-SQKNTVTYNSMISAYAKNGRVNDARKLFE 70
           GS VF  N  +   G  G +++A ++F++  S++N V++N ++SAY KN +  DA ++F 
Sbjct: 132 GSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFG 191

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
           +M       W+ +                     +P  F ++ ++   T    +E  R++
Sbjct: 192 EM------VWSGI---------------------QPTEFGFSCVVNACTGSRNIEAGRQV 224

Query: 131 FDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
             ++      +D    NA+V  Y K+G  + A  + + MP  ++VSWN+++SG   NG  
Sbjct: 225 HAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD 284

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI--------PEQNVVSWVTM 239
           H A +    M+   +V     L   ++      A+   ++I         + +    V +
Sbjct: 285 HRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGL 344

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM-PERNPVSW 298
           +  YA+N  + +AR++FD M  R+++  NA+I+     G+ +EA  LF E+  E   V+ 
Sbjct: 345 VDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNR 404

Query: 299 TTMIDGYVRIAKLDEAR--RLLDQMPYK-----NIAAQTAMISGYVQNKRMDEANQIFDK 351
           TT+       A L+ A   R +  +  K     +      +I  Y +   + +AN++F++
Sbjct: 405 TTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEE 464

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK------------------------- 386
             + D++    MI   +QC   + AI LF +M+ K                         
Sbjct: 465 CSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQG 524

Query: 387 --------------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
                         D    N ++  YA+   ++DA   F  +   R  VSW+A+I G  Q
Sbjct: 525 KQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSL-PERGVVSWSAMIGGLAQ 583

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
           +     AL++F  M  EG   +H T+   L AC H
Sbjct: 584 HGHGKRALELFGRMVDEGINPNHITMTSVLCACNH 618



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 194/401 (48%), Gaps = 31/401 (7%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
            K+  T N+++  Y K GRV+ A  +FE+MP  ++VSWN++I+G + N     A EL  +
Sbjct: 234 DKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQ 293

Query: 103 M----FRPDLFSWALMITCYTRKGELEKAREL--FDLLPNKE-DTACWNAMVAGYAKIGN 155
           M      P++F+ + ++   +  G  +  R++  F +  N + D      +V  YAK   
Sbjct: 294 MKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHF 353

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA-SKFFEAMEERDVVSWNLMLDGYVE 214
            ++A+K+ D M  ++++  N+++SG +  G    A S F+E  +E   V+   +      
Sbjct: 354 LDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKS 413

Query: 215 LDDLDSAWKFFQK---------IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
              L++A    Q          I + +VV+   ++  Y +   + +A R+F++    +++
Sbjct: 414 TASLEAASTTRQVHALAVKIGFIFDAHVVN--GLIDSYWKCSCLSDANRVFEECSSGDII 471

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARR----L 317
           A  +MI A  Q    E A +LF+EM     E +P   +++++    ++  ++ ++    L
Sbjct: 472 ACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHL 531

Query: 318 LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAI 377
           + +    +  A  A++  Y +   +++A   F  +    VV W+ MI G AQ G    A+
Sbjct: 532 IKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRAL 591

Query: 378 NLFRQMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEM 414
            LF +MV++ I    +T  +++        +D+A + F  M
Sbjct: 592 ELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSM 632



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 14/161 (8%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S  F  N  +    K G +E+A   FS + ++  V++++MI   A++G    A +LF +M
Sbjct: 538 SDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRM 597

Query: 73  PQR----NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFS-------WALMITCYTRK 121
                  N ++  S++    H   V EA+  F+ M   ++F        ++ MI    R 
Sbjct: 598 VDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSM--KEMFGIDRTEEHYSCMIDLLGRA 655

Query: 122 GELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKL 162
           G+L+ A EL + +P + + + W A++ G +++    E  KL
Sbjct: 656 GKLDDAMELVNSMPFQANASIWGALL-GASRVHKDPELGKL 695


>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
          Length = 768

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 228/728 (31%), Positives = 392/728 (53%), Gaps = 47/728 (6%)

Query: 28  SGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGY 87
           +G++  A  + S++S  +T   N +I  YAK   ++ +R+LF+QMP+R++ +WN+++  Y
Sbjct: 23  AGKLIHAHMLRSRLSD-DTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAY 81

Query: 88  LHNDKVKEARELFDKMFRPDLFSWALMITCYTRKG------ELEKARELFDL---LPNKE 138
               ++++A  LF +M   ++ SW  +I+  TR G      ++E  R    +   +    
Sbjct: 82  CKASELEDAHVLFAEMPERNIVSWNTLISALTRNGACGALVDVECGRRCHGISIKIGLDN 141

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           +    NA++  YAK     +A +    +P  N VS+ +M+ G   + +++ A + F  M 
Sbjct: 142 NIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLML 201

Query: 199 ER----DVVSWNLMLD----------GYVELDDLDSAWKFFQKIP--------EQNVVSW 236
                 D VS + +L           G  + +D+ S+    Q++         E ++   
Sbjct: 202 RNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLN 261

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ----IEEAARLFIEMPE 292
            ++L  YA+NG M  A  +F  MP  +VV+WN MIA Y Q+ Q    IE   R+     E
Sbjct: 262 NSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFE 321

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
            + +++  M+   ++   ++  R++ D M   ++++   ++SGY QN+   EA ++F ++
Sbjct: 322 PDEITYVNMLVACIKSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREM 381

Query: 353 ---GTH-DVVCWNVMIKGYA-----QCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQ 403
                H D     +++   A     + GR   A++  + +   DI   + +I  Y++  +
Sbjct: 382 QFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQ-KAVFRTDIYLASGLIGMYSKCGK 440

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS 463
           ++ A +IF+ + +  + V WN++++G   N    +A   F  M ++G      + A  LS
Sbjct: 441 VEMAKRIFDRIAE-LDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLS 499

Query: 464 ACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
            CA L++L  GRQ+H    + GY+ND FVG++LI MY+KCG +  A  +F      + ++
Sbjct: 500 CCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVT 559

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMT 583
           WN +I GYA NG   EA+ L+E+M+  G  PD +TF+ VL+ACSH GLVD G+K+F  M 
Sbjct: 560 WNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQ 619

Query: 584 EVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLG 643
           + + +EPLV+HY C+ID L RAGRL EA  ++  M  K +  IW  LL +CR++ ++ L 
Sbjct: 620 QEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLSSCRVYADVSLA 679

Query: 644 RIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQ 703
           R A E+L  L+PQ ++ Y LL+N+++  GRWD+ + VR  M  +   K PG SWIE KN 
Sbjct: 680 RRAAEELFHLDPQNSAPYVLLANIYSSLGRWDDAKAVRELMSYNQVVKDPGYSWIEHKNG 739

Query: 704 IHTFLSGD 711
           +  F+  D
Sbjct: 740 MQAFMVDD 747



 Score =  208 bits (529), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 150/548 (27%), Positives = 270/548 (49%), Gaps = 45/548 (8%)

Query: 112 ALMITCYTRKGELEKARELFDLLPNK--EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK 169
           +L+ TC  +K  L        +L ++  +DT   N ++  YAK    + +++L D MP +
Sbjct: 10  SLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKR 69

Query: 170 NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE------LDDLDSAWK 223
           +I +WN++L  Y K  E+  A   F  M ER++VSWN ++           L D++   +
Sbjct: 70  DIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGACGALVDVECGRR 129

Query: 224 FFQ---KIP-EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ 279
                 KI  + N+     +L  YA+   + +A + F  +P  N V++ AM+       Q
Sbjct: 130 CHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQ 189

Query: 280 IEEAARLFIEMPER----NPVSWTTMIDGYVRIA----KLDEARRLLDQMPY-------- 323
           + EA RLF  M       + VS ++++    R       L ++  +L    +        
Sbjct: 190 VNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLT 249

Query: 324 ------KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAI 377
                  ++    +++  Y +N  MD A  IF  +    VV WNVMI GY Q  +  +AI
Sbjct: 250 IKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAI 309

Query: 378 NLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433
              ++M       D +T+  M+    +   ++   ++F+ M    +  SWN ++SG+ QN
Sbjct: 310 EYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSS-PSLSSWNTILSGYSQN 368

Query: 434 EFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG 493
           E H +A+K+F  M       D +TLA  LS+ A +  L+ GRQ+H ++ K+ +  D+++ 
Sbjct: 369 ENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLA 428

Query: 494 NSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA 553
           + LI MY+KCG+++ A+ +F     +D++ WNS++AG ++N    EA   F++M  +G+ 
Sbjct: 429 SGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMF 488

Query: 554 PDPVTFIGVLSACSHVGLVDGGLKLF-ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA- 611
           P   ++  VLS C+ +  +  G ++  +   E Y  +  V   + +ID+ S+ G +D A 
Sbjct: 489 PSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVG--SALIDMYSKCGDVDAAR 546

Query: 612 --FEMVKG 617
             F+M+ G
Sbjct: 547 WVFDMMLG 554



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 157/654 (24%), Positives = 275/654 (42%), Gaps = 128/654 (19%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            F  N+ I    K   ++ + ++F QM +++  T+N+++ AY K   + DA  LF +MP+
Sbjct: 40  TFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPE 99

Query: 75  RNLVSWNSMIAGYLHND------KVKEARELFDKMFR----PDLFSWALMITCYTRKGEL 124
           RN+VSWN++I+    N        V+  R       +     +++    ++  Y +   +
Sbjct: 100 RNIVSWNTLISALTRNGACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCI 159

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------------------ 166
             A + F  +P   + + + AM+ G A     NEA +L   M                  
Sbjct: 160 GDAIQAFGDVPEPNEVS-FTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGV 218

Query: 167 ------------PSKNIVSWN-----------------------SMLSGYTKNGEMHLAS 191
                        S +++S +                       S+L  Y KNG M  A 
Sbjct: 219 CSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAE 278

Query: 192 KFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNG 247
             F  M E  VVSWN+M+ GY +      A ++ Q++     E + +++V ML    ++G
Sbjct: 279 MIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSG 338

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PERNPVSWTTM 301
            +   R++FD M   ++ +WN +++ Y Q    +EA +LF EM      P+R  ++   +
Sbjct: 339 DIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLA---I 395

Query: 302 IDGYVRIAKLDEARRLLDQMPYK-----NIAAQTAMISGYVQNKRMDEANQIFDKIGTHD 356
           I   +    L E  R +  +  K     +I   + +I  Y +  +++ A +IFD+I   D
Sbjct: 396 ILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELD 455

Query: 357 VVCWNVMIKGYAQCGRMDEAINLFRQMVNK------------------------------ 386
           +VCWN M+ G +      EA   F++M  K                              
Sbjct: 456 IVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHS 515

Query: 387 ---------DIVTWNTMIAGYAQIRQMDDAVKIFEEM-GKRRNTVSWNALISGFLQNEFH 436
                    D    + +I  Y++   +D A  +F+ M GK  NTV+WN +I G+ QN   
Sbjct: 516 QIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGK--NTVTWNEMIHGYAQNGCG 573

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG-NS 495
            +A+ ++  M   G+K D  T    L+AC+H   +  G +I +   +   V  L      
Sbjct: 574 DEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTC 633

Query: 496 LITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGNATEAIKLFEEM 547
           +I    + GR+  AE+L  D  P   D I W  L++   +  + + A +  EE+
Sbjct: 634 IIDSLGRAGRLHEAEVLI-DKMPCKYDPIIWEVLLSSCRVYADVSLARRAAEEL 686



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 103/432 (23%), Positives = 200/432 (46%), Gaps = 32/432 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMS----QKNTVTYNSMISAYAKNGRVNDARKLFE 70
           V + N  I   G+  +  +AI+   +M     + + +TY +M+ A  K+G +   R++F+
Sbjct: 289 VVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFD 348

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM-FR---PDLFSWALMITCYTRKGELEK 126
            M   +L SWN++++GY  N+  KEA +LF +M FR   PD  + A++++       LE 
Sbjct: 349 GMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEG 408

Query: 127 ARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK 183
            R++  +      + D    + ++  Y+K G    AK++ D +   +IV WNSM++G + 
Sbjct: 409 GRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSL 468

Query: 184 NGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS---- 235
           N     A  FF+ M E+ +     S+  +L    +L  L    +   +I  +  ++    
Sbjct: 469 NSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFV 528

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----P 291
              ++  Y++ G +  AR +FD M  +N V WN MI  Y Q G  +EA  L+ +M     
Sbjct: 529 GSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGE 588

Query: 292 ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN-----IAAQTAMISGYVQNKRMDEAN 346
           + + +++  ++        +D   ++ + M  ++     +   T +I    +  R+ EA 
Sbjct: 589 KPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAE 648

Query: 347 QIFDKIGT-HDVVCWNVMIKG---YAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIR 402
            + DK+   +D + W V++     YA       A      +  ++   +  +   Y+ + 
Sbjct: 649 VLIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQNSAPYVLLANIYSSLG 708

Query: 403 QMDDAVKIFEEM 414
           + DDA  + E M
Sbjct: 709 RWDDAKAVRELM 720



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 107/282 (37%), Gaps = 60/282 (21%)

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD 517
           LA  L  C    A   G+ IH   ++S   +D F+ N LI  YAKC  I  +  LF    
Sbjct: 8   LASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMP 67

Query: 518 PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLK 577
             D+ +WN+++  Y       +A  LF EM    +    V++  ++SA +  G   G L 
Sbjct: 68  KRDIYTWNAILGAYCKASELEDAHVLFAEMPERNI----VSWNTLISALTRNGAC-GALV 122

Query: 578 LFECMTEVYAI-------------------------------------EPLVEHYACMID 600
             EC    + I                                     EP    +  M+ 
Sbjct: 123 DVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMG 182

Query: 601 LLSRAGRLDEAFEMVKGM---KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL--SELEP 655
            L+ + +++EAF + + M   +I  ++    ++LG C      + G      +  S++  
Sbjct: 183 GLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHG 242

Query: 656 QKTSCYAL-------------LSNMHAEAGRWDEVEKVRVSM 684
           Q+  C  +             L +M+A+ G  D  E + V+M
Sbjct: 243 QQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNM 284


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 234/731 (32%), Positives = 379/731 (51%), Gaps = 61/731 (8%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL- 108
           N +IS Y+K  R   AR+ F+++P    VSW+S++  Y +N   + A + F  M    + 
Sbjct: 41  NHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVC 100

Query: 109 ---FSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDA 165
              F+  +++ C        +   +        D    NA+VA Y   G  ++A+++ + 
Sbjct: 101 CNEFALPVVLKCVPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNE 160

Query: 166 MPS-KNIVSWNSMLSGYTKNGEMHLASKFFEAM--------------------------- 197
             S +N VSWN ++S Y KN +   A + F  M                           
Sbjct: 161 ADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEA 220

Query: 198 ------------EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR 245
                        ++DV + N ++D Y+++  +D A   F+K+P+ +VVSW  ++SG   
Sbjct: 221 GRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVL 280

Query: 246 NGRMLEARRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS---- 297
           NG    A  L  QM     + NV   ++++ A    G  +   ++   M + N  S    
Sbjct: 281 NGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYI 340

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV 357
              ++D Y +   LD+AR++ D M ++++    A+ISG     R DEA  +F ++    +
Sbjct: 341 GVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGL 400

Query: 358 VCWNVMIKGYAQCGRMDEAINLFRQM--------VNKDIVTWNTMIAGYAQIRQMDDAVK 409
                 +    +     EA +  RQ+           D    N +I  Y +   + DA +
Sbjct: 401 GVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANR 460

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           +FEE     + ++  ++I+   Q +    A+K+F+ M ++G + D   L+  L+ACA L+
Sbjct: 461 VFEECSS-GDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLS 519

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
           A + G+Q+H   IK  +++D F GN+L+  YAKCG I++AEL F       V+SW+++I 
Sbjct: 520 AYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIG 579

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE 589
           G A +G+   A++LF  MV EG+ P+ +T   VL AC+H GLVD   + F  M E++ I+
Sbjct: 580 GLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGID 639

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649
              EHY+CMIDLL RAG+LD+A E+V  M  + NA IWG LLGA R+H++ +LG++A EK
Sbjct: 640 RTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEK 699

Query: 650 LSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLS 709
           L  LEP+K+  + LL+N +A AG W+EV KVR  M+ S  +K+P  SWIEVK+++HTF+ 
Sbjct: 700 LFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIV 759

Query: 710 GDPKQCRTAEI 720
           GD     T EI
Sbjct: 760 GDKSHPMTKEI 770



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 124/515 (24%), Positives = 224/515 (43%), Gaps = 87/515 (16%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQM-SQKNTVTYNSMISAYAKNGRVNDARKLFE 70
           GS VF  N  +   G  G +++A ++F++  S++N V++N ++SAY KN +  DA ++F 
Sbjct: 132 GSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFG 191

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
           +M       W+ +                     +P  F ++ ++   T    +E  R++
Sbjct: 192 EM------VWSGI---------------------QPTEFGFSCVVNACTGSRNIEAGRQV 224

Query: 131 FDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
             ++      +D    NA+V  Y K+G  + A  + + MP  ++VSWN+++SG   NG  
Sbjct: 225 HAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD 284

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI--------PEQNVVSWVTM 239
           H A +    M+   +V     L   ++      A+   ++I         + +    V +
Sbjct: 285 HRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGL 344

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM-PERNPVSW 298
           +  YA+N  + +AR++FD M  R+++  NA+I+     G+ +EA  LF E+  E   V+ 
Sbjct: 345 VDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNR 404

Query: 299 TTMIDGYVRIAKLDEAR--RLLDQMPYK-----NIAAQTAMISGYVQNKRMDEANQIFDK 351
           TT+       A L+ A   R +  +  K     +      +I  Y +   + +AN++F++
Sbjct: 405 TTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEE 464

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK------------------------- 386
             + D++    MI   +QC   + AI LF +M+ K                         
Sbjct: 465 CSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQG 524

Query: 387 --------------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
                         D    N ++  YA+   ++DA   F  +   R  VSW+A+I G  Q
Sbjct: 525 KQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSL-PERGVVSWSAMIGGLAQ 583

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
           +     AL++F  M  EG   +H T+   L AC H
Sbjct: 584 HGHGKRALELFGRMVDEGINPNHITMTSVLCACNH 618



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 194/401 (48%), Gaps = 31/401 (7%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
            K+  T N+++  Y K GRV+ A  +FE+MP  ++VSWN++I+G + N     A EL  +
Sbjct: 234 DKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQ 293

Query: 103 M----FRPDLFSWALMITCYTRKGELEKAREL--FDLLPNKE-DTACWNAMVAGYAKIGN 155
           M      P++F+ + ++   +  G  +  R++  F +  N + D      +V  YAK   
Sbjct: 294 MKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHF 353

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA-SKFFEAMEERDVVSWNLMLDGYVE 214
            ++A+K+ D M  ++++  N+++SG +  G    A S F+E  +E   V+   +      
Sbjct: 354 LDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKS 413

Query: 215 LDDLDSAWKFFQK---------IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
              L++A    Q          I + +VV+   ++  Y +   + +A R+F++    +++
Sbjct: 414 TASLEAASTTRQVHALAVKIGFIFDAHVVN--GLIDSYWKCSCLSDANRVFEECSSGDII 471

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARR----L 317
           A  +MI A  Q    E A +LF+EM     E +P   +++++    ++  ++ ++    L
Sbjct: 472 ACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHL 531

Query: 318 LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAI 377
           + +    +  A  A++  Y +   +++A   F  +    VV W+ MI G AQ G    A+
Sbjct: 532 IKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRAL 591

Query: 378 NLFRQMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEM 414
            LF +MV++ I    +T  +++        +D+A + F  M
Sbjct: 592 ELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSM 632



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 14/161 (8%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S  F  N  +    K G +E+A   FS + ++  V++++MI   A++G    A +LF +M
Sbjct: 538 SDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRM 597

Query: 73  PQR----NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFS-------WALMITCYTRK 121
                  N ++  S++    H   V EA+  F+ M   ++F        ++ MI    R 
Sbjct: 598 VDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSM--KEMFGIDRTEEHYSCMIDLLGRA 655

Query: 122 GELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKL 162
           G+L+ A EL + +P + + + W A++ G +++    E  KL
Sbjct: 656 GKLDDAMELVNSMPFQANASIWGALL-GASRVHKDPELGKL 695


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  377 bits (969), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/557 (33%), Positives = 321/557 (57%), Gaps = 6/557 (1%)

Query: 181 YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
           + + G +  A + F+A+ +RD  SW +ML  Y    DL +A   F ++P  ++ SW  +L
Sbjct: 2   FGRLGCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTALL 61

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTT 300
           S +A +G   EA+ LFD M  R+++AW  M+        IE+A   F +MPER+ V+WT 
Sbjct: 62  SAFALSGHHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAWTA 121

Query: 301 MIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW 360
           M+       +++ AR   DQMP +N+ + T+++S Y ++  +  A ++FD +   ++V W
Sbjct: 122 MLAANAERGQMENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSMPEWNLVAW 181

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
             M+ GY+  G +  A   F  M  +D++ W  M++ YA    +    +IF+ M +R + 
Sbjct: 182 TAMLTGYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPER-DL 240

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQ-----EGKKADHSTLACALSACAHLAALQLGR 475
           +SW  +++  ++N+   ++ ++F  M +     +G   +  T    L AC+ L AL  GR
Sbjct: 241 ISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGR 300

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
           +IH    + G+  DL V N+L+  Y +CG + +A+++F      DVISW+S+I+ +A  G
Sbjct: 301 KIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRG 360

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHY 595
              EA++L+  M+ EG  PD + FI VL ACS+ G+V+     F  +     +EP +EHY
Sbjct: 361 RVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHY 420

Query: 596 ACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEP 655
           ACM+D+L RAG+L +A ++++ M   P   ++ T+L AC+++ +++ G  A E + EL+P
Sbjct: 421 ACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFELDP 480

Query: 656 QKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQC 715
           + +S Y  L+N+++ A R  +  ++R  ME  G +K+PGCSWIEV +++H F++GD    
Sbjct: 481 ENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAGDKMHP 540

Query: 716 RTAEICNTLKTLAAQIR 732
           +  EI   ++ L  Q++
Sbjct: 541 QRDEIYAEIQRLGRQMK 557



 Score =  243 bits (620), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 119/375 (31%), Positives = 220/375 (58%), Gaps = 14/375 (3%)

Query: 25  LGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMI 84
            G+ G VE A +IF  ++ +++ ++  M+S YA++G +++A+ +F++MP+ +L SW +++
Sbjct: 2   FGRLGCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTALL 61

Query: 85  AGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWN 144
           + +  +   +EA+ LFD M   DL +W +M+T       +E A+  FD +P + D   W 
Sbjct: 62  SAFALSGHHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPER-DLVAWT 120

Query: 145 AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS 204
           AM+A  A+ G    A++  D MP +N+ SW S+LS Y ++G++  A + F++M E ++V+
Sbjct: 121 AMLAANAERGQMENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSMPEWNLVA 180

Query: 205 WNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV 264
           W  ML GY    D+  A + F  +PE+++++W  MLS YA NG +   R +F +MP R++
Sbjct: 181 WTAMLTGYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDL 240

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPER---------NPVSWTTMIDGYVRIAKLDEAR 315
           ++W  M+AA V+   +EE+  LF  MP           N V++ T++D    +  L E R
Sbjct: 241 ISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGR 300

Query: 316 RLLDQMPYK----NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
           ++   +  +    ++    A+++ Y +   + +A  +FD +   DV+ W+ MI  +AQ G
Sbjct: 301 KIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRG 360

Query: 372 RMDEAINLFRQMVNK 386
           R+DEA+ L+ +M+++
Sbjct: 361 RVDEAMELYHRMLSE 375



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 114/373 (30%), Positives = 204/373 (54%), Gaps = 16/373 (4%)

Query: 56  YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMI 115
           + + G V  AR++F+ +  R+  SW  M++ Y  +  +  A+ +FD+M R  L SW  ++
Sbjct: 2   FGRLGCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTALL 61

Query: 116 TCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN 175
           + +   G  E+A+ LFD +  + D   W  M+   A   N  +AK   D MP +++V+W 
Sbjct: 62  SAFALSGHHEEAKTLFDTMQER-DLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAWT 120

Query: 176 SMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
           +ML+   + G+M  A + F+ M ER++ SW  +L  Y    D+ +A + F  +PE N+V+
Sbjct: 121 AMLAANAERGQMENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSMPEWNLVA 180

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
           W  ML+GY+ +G ++ A+R FD MP R+++AW AM++AY   G +     +F  MPER+ 
Sbjct: 181 WTAMLTGYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDL 240

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG-- 353
           +SW TM+   V    L+E++ L D+MP ++ A    M    V    + +A      +   
Sbjct: 241 ISWATMVAALVENDLLEESKELFDRMP-RHCALSKGMTPNRVTFITLLDACSFLGALAEG 299

Query: 354 ------------THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQI 401
                         D+V  N ++  Y +CG + +A  +F  M  +D+++W++MI+ +AQ 
Sbjct: 300 RKIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQR 359

Query: 402 RQMDDAVKIFEEM 414
            ++D+A++++  M
Sbjct: 360 GRVDEAMELYHRM 372



 Score =  222 bits (566), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 157/622 (25%), Positives = 284/622 (45%), Gaps = 104/622 (16%)

Query: 118 YTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSM 177
           + R G +E+AR++FD + ++ D+  W  M++ YA+ G+ + AK + D MP  ++ SW ++
Sbjct: 2   FGRLGCVERARQIFDAIADR-DSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTAL 60

Query: 178 LSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV 237
           LS +  +G    A   F+ M+ERD+++W +ML       +++ A   F ++PE+++V+W 
Sbjct: 61  LSAFALSGHHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAWT 120

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
            ML+  A  G+M  AR  FDQMP RN+ +W ++++AY + G ++ A R+F  MPE N V+
Sbjct: 121 AMLAANAERGQMENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSMPEWNLVA 180

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV 357
           WT M+ GY     +  A+R  D MP +++ A TAM+S Y  N  +    +IF ++   D+
Sbjct: 181 WTAMLTGYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDL 240

Query: 358 VCWNVMIKGYAQCGRMDEAINLFRQM---------------------------------- 383
           + W  M+    +   ++E+  LF +M                                  
Sbjct: 241 ISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGR 300

Query: 384 ----------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433
                      + D+V  N ++  Y +   + DA  +F+ M +RR+ +SW+++IS F Q 
Sbjct: 301 KIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGM-RRRDVISWSSMISAFAQR 359

Query: 434 EFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG 493
               +A++++  M  EG   D       L AC++   ++         +    V      
Sbjct: 360 GRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEH 419

Query: 494 NS-LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
            + ++ +  + G++++AE L +                                  +   
Sbjct: 420 YACMVDVLGRAGKLRDAEDLLR----------------------------------LMPF 445

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEA 611
            P P+ ++ +LSAC     V+ G    E    V+ ++P     Y  + ++ S A R  +A
Sbjct: 446 HPGPLLYMTMLSACKLYTDVERGEAAAEV---VFELDPENSSPYITLANIYSAAKRPKDA 502

Query: 612 FEMVK-----GMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYA---L 663
             + K     G+K KP    W  +L   R+H+      IA +K   + PQ+   YA    
Sbjct: 503 ARIRKLMEERGIKKKPGCS-WIEVLD--RVHEF-----IAGDK---MHPQRDEIYAEIQR 551

Query: 664 LSNMHAEAGRWDEVEKVRVSME 685
           L     EAG + + + V   +E
Sbjct: 552 LGRQMKEAGYFQDTKVVLQDVE 573



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 121/457 (26%), Positives = 233/457 (50%), Gaps = 28/457 (6%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           ++    SG  EEA  +F  M +++ + +  M++  A    + DA+  F+QMP+R+LV+W 
Sbjct: 61  LSAFALSGHHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAWT 120

Query: 82  SMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTA 141
           +M+A      +++ ARE FD+M   +LFSW  +++ Y R G+++ A  +FD +P + +  
Sbjct: 121 AMLAANAERGQMENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSMP-EWNLV 179

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
            W AM+ GY+  G+   AK+  D+MP +++++W +MLS Y  NG +    + F+ M ERD
Sbjct: 180 AWTAMLTGYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERD 239

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKIPEQ---------NVVSWVTMLSGYARNGRMLEA 252
           ++SW  M+   VE D L+ + + F ++P           N V+++T+L   +  G + E 
Sbjct: 240 LISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEG 299

Query: 253 RRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRI 308
           R++   +  R    ++V  NA++  Y + G + +A  +F  M  R+ +SW++MI  + + 
Sbjct: 300 RKIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQR 359

Query: 309 AKLDEARRLLDQMPYKNIAAQTAMISGYV---QNKRMDEANQIFDKIGTHDVVC------ 359
            ++DEA  L  +M  +       +    +    N  + EA+  F +    D         
Sbjct: 360 GRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEH 419

Query: 360 WNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAG---YAQIRQMDDAVKIFEEMG 415
           +  M+    + G++ +A +L R M  +   + + TM++    Y  + + + A ++  E+ 
Sbjct: 420 YACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFELD 479

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
              N+  +  L + +   +   DA +I  LM + G K
Sbjct: 480 P-ENSSPYITLANIYSAAKRPKDAARIRKLMEERGIK 515



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 181/364 (49%), Gaps = 35/364 (9%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F+    ++  G+SG V+ A ++F  M + N V + +M++ Y+ +G V  A++ F+ MP+
Sbjct: 147 LFSWTSLLSAYGRSGDVKAAGRVFDSMPEWNLVAWTAMLTGYSLSGDVVRAKRAFDSMPE 206

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           R+L++W +M++ Y  N  ++  RE+F +M   DL SWA M+        LE+++ELFD +
Sbjct: 207 RDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDLISWATMVAALVENDLLEESKELFDRM 266

Query: 135 PNK--------EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSMLSGYT 182
           P           +   +  ++   + +G   E +K+  A+  +    ++V  N++++ Y 
Sbjct: 267 PRHCALSKGMTPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDLVVSNALVNFYG 326

Query: 183 KNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS----WVT 238
           + G +  A   F+ M  RDV+SW+ M+  + +   +D A + + ++  +  +     +++
Sbjct: 327 RCGALGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFIS 386

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVA----------WNAMIAAYVQRGQIEEAARLFI 288
           +L   + +G ++EA   F     R++V           +  M+    + G++ +A  L  
Sbjct: 387 VLFACSNSG-VVEASGDF----FRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLR 441

Query: 289 EMP-ERNPVSWTTMIDG---YVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDE 344
            MP    P+ + TM+     Y  + + + A  ++ ++  +N +    + + Y   KR  +
Sbjct: 442 LMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFELDPENSSPYITLANIYSAAKRPKD 501

Query: 345 ANQI 348
           A +I
Sbjct: 502 AARI 505


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 235/743 (31%), Positives = 377/743 (50%), Gaps = 61/743 (8%)

Query: 46  TVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM-- 103
            V  N ++S Y+K      AR++F+++P    VSW+S++  Y +N   ++A   F  M  
Sbjct: 37  AVFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRS 96

Query: 104 --FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKK 161
              R + F   +++ C    G   +   L        D    NA+VA Y   G  +EA+ 
Sbjct: 97  CSVRCNEFVLPVVLKCAPDAGFGTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARM 156

Query: 162 LLD-AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----------------------- 197
           + D A   +N VSWN ++S Y KN     A K F  M                       
Sbjct: 157 VFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSR 216

Query: 198 ----------------EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
                            ++DV + N ++D Y +L D+  A   F K+PE +VVSW   +S
Sbjct: 217 DLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFIS 276

Query: 242 GYARNGRMLEARRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
           G   +G    A  L  QM     + NV   ++++ A    G      ++   M + N  S
Sbjct: 277 GCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADS 336

Query: 298 ----WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
                  ++D Y +   LD+A+++ D +P +++    A+ISG     +  EA  +F ++ 
Sbjct: 337 DNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMR 396

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQM--------VNKDIVTWNTMIAGYAQIRQMD 405
                     +    +     EAI+  RQ+           D    N +I  Y +   ++
Sbjct: 397 KEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLN 456

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
            A ++FE+ G   + +++ ++I+   Q +   DA+K+F+ M ++G   D   L+  L+AC
Sbjct: 457 YAYRVFEKHGSY-DIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNAC 515

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
           A L+A + G+Q+H   IK  +++D+F GN+L+  YAKCG I++A+L F       V+SW+
Sbjct: 516 ASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWS 575

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
           ++I G A +G+   A+ +F  MV E ++P+ +T   VL AC+H GLVD   + F  M E+
Sbjct: 576 AMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEM 635

Query: 586 YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI 645
           + IE   EHYACMIDLL RAG+LD+A E+V  M  + NA +WG LL A R+H++ +LGR+
Sbjct: 636 FGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRL 695

Query: 646 AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705
           A EKL  LEP+K+  + LL+N +A AG WD+V KVR  M+ S  +K+P  SW+E+K+++H
Sbjct: 696 AAEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDKVH 755

Query: 706 TFLSGDPKQCRTAEICNTLKTLA 728
           TF+ GD    R  +I   L  L 
Sbjct: 756 TFIVGDKSHPRARDIYAKLDELG 778



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 122/512 (23%), Positives = 218/512 (42%), Gaps = 81/512 (15%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMS-QKNTVTYNSMISAYAKNGRVNDARKLFE 70
           G  +F  N  +   G  G V+EA  +F +   ++NTV++N ++SAY KN R + A K+F 
Sbjct: 132 GGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFG 191

Query: 71  QM----PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKG 122
           +M     Q N   ++ ++     +  ++  R++   + R     D+F+   ++  Y++ G
Sbjct: 192 EMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLG 251

Query: 123 ELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSML 178
           ++  A  +F  +P + D   WNA ++G    G+   A +LL  M S     N+ + +S+L
Sbjct: 252 DIRMAAVVFGKVP-ETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSIL 310

Query: 179 SGYTKNGEMHLASKFFEAMEERDVVSWNL----MLDGYVELDDLDSAWKFFQKIPEQNVV 234
                +G  +L  +    M + +  S N     ++D Y +   LD A K F  IP++++V
Sbjct: 311 KACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLV 370

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
            W  ++SG +   +  EA  LF +M           +AA ++     EA           
Sbjct: 371 LWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEA----------- 419

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
                  I    ++  L E    L      N      +I  Y +   ++ A ++F+K G+
Sbjct: 420 -------ISDTRQVHALAEKLGFLSDSHVVN-----GLIDSYWKCDCLNYAYRVFEKHGS 467

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK---------------------------- 386
           +D++ +  MI   +QC   ++AI LF +M+ K                            
Sbjct: 468 YDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQV 527

Query: 387 -----------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEF 435
                      D+   N ++  YA+   ++DA   F  +   +  VSW+A+I G  Q+  
Sbjct: 528 HAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGL-PEKGVVSWSAMIGGLAQHGH 586

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAH 467
              AL +F  M  E    +H T+   L AC H
Sbjct: 587 GKRALDVFHRMVDEHISPNHITMTSVLCACNH 618



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/417 (22%), Positives = 202/417 (48%), Gaps = 32/417 (7%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           ++GR   A+ I +    K+  T N+++  Y+K G +  A  +F ++P+ ++VSWN+ I+G
Sbjct: 219 EAGRKVHAMVIRTGY-DKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISG 277

Query: 87  YLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KED 139
            + +   + A EL  +M      P++F+ + ++      G     R++   +       D
Sbjct: 278 CVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSD 337

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE 199
                 +V  YAK G  ++AKK+ D +P +++V WN+++SG +   +   A   F  M +
Sbjct: 338 NYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRK 397

Query: 200 ------RDVVSWNLMLDGYVE-LDDLDSAWKFFQK---IPEQNVVSWVTMLSGYARNGRM 249
                 R  ++  L     +E + D        +K   + + +VV+   ++  Y +   +
Sbjct: 398 EGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVN--GLIDSYWKCDCL 455

Query: 250 LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGY 305
             A R+F++    +++A+ +MI A  Q    E+A +LF+EM  +    +P   +++++  
Sbjct: 456 NYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNAC 515

Query: 306 VRIAKLDEARR----LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWN 361
             ++  ++ ++    L+ +    ++ A  A++  Y +   +++A+  F  +    VV W+
Sbjct: 516 ASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWS 575

Query: 362 VMIKGYAQCGRMDEAINLFRQMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEM 414
            MI G AQ G    A+++F +MV++ I    +T  +++        +D+A + F  M
Sbjct: 576 AMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSM 632


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/619 (34%), Positives = 343/619 (55%), Gaps = 59/619 (9%)

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
           N+++S Y + G +  A + F+ +  R+  S+N +L  Y  L   D A   F+ IP+ +  
Sbjct: 56  NTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQC 115

Query: 235 SWVTMLSGYARNGR--MLEARRLFDQMP----IRNVVAWNAMIAAYVQRGQI---EEAAR 285
           S+  +++  AR+GR    +A R    M     + N  ++ + ++A      +   E+   
Sbjct: 116 SYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALSACAAEKDLRTGEQVHG 175

Query: 286 LFIEMPERNPVS-WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDE 344
           L    P  + V   T ++D Y +  +  +ARR+ D MP +N+ +  ++I+ Y QN  + E
Sbjct: 176 LVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGE 235

Query: 345 ANQIF-------------------------------DKIGTH---------DVVCWNVMI 364
           A  +F                                ++  H         D+V  N ++
Sbjct: 236 ALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALV 295

Query: 365 KGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
             YA+CGR  EA  +F  M ++ +V+  +++AGYA+   ++DA  +F +M ++ N ++WN
Sbjct: 296 DMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEK-NVIAWN 354

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
            LI+ + QN    +A+++FV + ++     H T    L+AC ++A LQLG+Q H   +K 
Sbjct: 355 VLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKE 414

Query: 485 GYV------NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNAT 538
           G+       +D+FVGNSL+ MY K G I +   +F+     D +SWN++I GYA NG A 
Sbjct: 415 GFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAK 474

Query: 539 EAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACM 598
           +A+ LFE M+     PD VT IGVLSAC H GLVD G + F  MTE + I P  +HY CM
Sbjct: 475 DALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCM 534

Query: 599 IDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKT 658
           +DLL RAG L EA E++K M  +P++ +W +LLGACR+H+N++LG     +L EL+P+ +
Sbjct: 535 VDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGERTAGRLFELDPENS 594

Query: 659 SCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQ-CRT 717
             Y LLSNM+AE G+W +V +VR SM+  G  KQPGCSWIE+ ++++ FL+ D +  CR 
Sbjct: 595 GPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQPGCSWIEIGSKMNVFLARDNRHPCRN 654

Query: 718 AEICNTLKTLAAQIRNTPL 736
            EI +TL+ +  ++  T +
Sbjct: 655 -EIHSTLRIIQMEMCRTSI 672



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/467 (27%), Positives = 233/467 (49%), Gaps = 67/467 (14%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            F  N  ++   + GR+ EA ++F  +  +NT +YN+++SAYA+ GR ++AR LFE +P 
Sbjct: 52  TFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRPDEARALFEAIPD 111

Query: 75  RNLVSWNSMIAGYLHNDK--VKEARELFDKMFRPDL----FSWALMITCYTRKGELEKAR 128
            +  S+N+++A    + +    +A      M   D     +S+A  ++    + +L    
Sbjct: 112 PDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALSACAAEKDLRTGE 171

Query: 129 ELFDLL---PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
           ++  L+   P+ +D     A+V  YAK     +A+++ DAMP +N+VSWNS+++ Y +NG
Sbjct: 172 QVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNG 231

Query: 186 EMH---------LASKFFE--------------------------AMEER-----DVVSW 205
            +          +A+ FF                            M +R     D+V  
Sbjct: 232 PVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLN 291

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
           N ++D Y +      A   F  +P ++VVS  ++L+GYA++  + +A+ +F QM  +NV+
Sbjct: 292 NALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVI 351

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWT--TMIDGYVRIAKLDEARRL---- 317
           AWN +IAAY Q G+ EEA RLF+++   +  P  +T   +++    IA L   ++     
Sbjct: 352 AWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHV 411

Query: 318 ------LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
                  D  P  ++    +++  Y++   +D+  ++F+++   D V WN MI GYAQ G
Sbjct: 412 LKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNG 471

Query: 372 RMDEAINLFRQMV----NKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           R  +A++LF +M+    N D VT   +++       +D+  + F  M
Sbjct: 472 RAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFM 518



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 150/311 (48%), Gaps = 32/311 (10%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           + GR   A  +     + + V  N+++  YAK GR  +AR +F+ MP R++VS  S++AG
Sbjct: 269 REGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAG 328

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT------ 140
           Y  +  V++A+ +F +M   ++ +W ++I  Y + GE E+A  LF  L  K D+      
Sbjct: 329 YAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQL--KRDSIWPTHY 386

Query: 141 -------ACWNAMVAGYAKIGNYNEAKK--LLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
                  AC N  V    +  + +  K+    D  P  ++   NS++  Y K G +   +
Sbjct: 387 TYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGA 446

Query: 192 KFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQN----VVSWVTMLSGYARNG 247
           K FE M  RD VSWN M+ GY +      A   F+++   N     V+ + +LS    +G
Sbjct: 447 KVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSG 506

Query: 248 RMLEARRLFDQM-------PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWT 299
            + E RR F  M       P R+   +  M+    + G ++EA  L  +MP E + V W 
Sbjct: 507 LVDEGRRHFHFMTEDHGITPSRD--HYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWA 564

Query: 300 TMIDGYVRIAK 310
           +++ G  R+ K
Sbjct: 565 SLL-GACRLHK 574



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 156/339 (46%), Gaps = 30/339 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +    K GR  EA  IF  M  ++ V+  S+++ YAK+  V DA+ +F QM ++N++
Sbjct: 292 NALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVI 351

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAREL---- 130
           +WN +IA Y  N + +EA  LF ++ R    P  +++  ++        L+  ++     
Sbjct: 352 AWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHV 411

Query: 131 ------FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
                 FD  P + D    N++V  Y K G+ ++  K+ + M +++ VSWN+M+ GY +N
Sbjct: 412 LKEGFRFDFGP-ESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQN 470

Query: 185 GEMHLASKFFEAM----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS----- 235
           G    A   FE M    E  D V+   +L        +D   + F  + E + ++     
Sbjct: 471 GRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDH 530

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE----EAARLFIEM 290
           +  M+    R G + EA  L   MP   + V W +++ A      +E     A RLF E+
Sbjct: 531 YTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGERTAGRLF-EL 589

Query: 291 PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
              N   +  + + Y  + K  +  R+   M  + ++ Q
Sbjct: 590 DPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQ 628



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 9/145 (6%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S VF  N  +    K+G +++  K+F +M+ ++ V++N+MI  YA+NGR  DA  LFE+M
Sbjct: 424 SDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERM 483

Query: 73  PQRNLVSWNSMIAGYL----HNDKVKEARELF-----DKMFRPDLFSWALMITCYTRKGE 123
              N    +  + G L    H+  V E R  F     D    P    +  M+    R G 
Sbjct: 484 LCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGH 543

Query: 124 LEKARELFDLLPNKEDTACWNAMVA 148
           L++A EL   +P + D+  W +++ 
Sbjct: 544 LKEAEELIKDMPTEPDSVLWASLLG 568



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 4/109 (3%)

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
           +L   R  H   +KS    + F+ N+L++ YA+ GR++ A  +F      +  S+N+L++
Sbjct: 32  SLPGARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLS 91

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
            YA  G   EA  LFE +      PD  ++  V++A +  G    G  L
Sbjct: 92  AYARLGRPDEARALFEAI----PDPDQCSYNAVVAALARHGRGHAGDAL 136


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 240/737 (32%), Positives = 396/737 (53%), Gaps = 40/737 (5%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I    K+G +E A K+F+ +  K+ VT+ +MIS  ++NG   +A  LF  M    + 
Sbjct: 199 NLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIF 258

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM--------FRPDLFSWALMITCYTRKGELEKAREL 130
               +++  L      +  EL +++        F  + +    ++  Y+R  +L  A  +
Sbjct: 259 PTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERI 318

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP----SKNIVSWNSMLSGYTKNGE 186
           F  + N  D   +N++++G  + G  + A +L   M       + ++  S+LS     G 
Sbjct: 319 FSTM-NSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGA 377

Query: 187 MH----LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG 242
           +H    L S   +A    D++    +LD Y +  D+++A KFF     +N+V W  ML  
Sbjct: 378 LHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVA 437

Query: 243 YARNGRMLEARRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERN 294
           Y +   + ++  +F QM     I N   + +++      G +    ++   +     + N
Sbjct: 438 YGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLN 497

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
               + +ID Y +  +L  A R+L ++P  ++ + TAMI+GYVQ+    EA Q+F+++  
Sbjct: 498 VYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEY 557

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQM-----------VNKDIVTWNTMIAGYAQIRQ 403
             +   N+   G+A        I   RQ               D+   N +I+ YA+  +
Sbjct: 558 RGIQFDNI---GFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGR 614

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS 463
           + +A   FE++G + N +SWN+L+SG  Q+ +  +AL++FV M +   + +  T   A+S
Sbjct: 615 IQEAYLAFEKIGDK-NNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAIS 673

Query: 464 ACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
           A A LA ++ G+QIH + +K+GY ++  V NSLI++YAK G I +A   F D    +VIS
Sbjct: 674 AAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVIS 733

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMT 583
           WN++I GY+ +G   EA++LFEEM + G+ P+ VTF+GVLSACSH+GLV  GL  FE M 
Sbjct: 734 WNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMF 793

Query: 584 EVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLG 643
           +++ + P  EHY C++DLL RAG+LD A E +K M I  +A IW TLL AC +H+NI++G
Sbjct: 794 KIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIG 853

Query: 644 RIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQ 703
             A   L ELEP+ ++ Y L+SN++A + +W   +  R  M+  G +K+PG SWIEVKN 
Sbjct: 854 ERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNA 913

Query: 704 IHTFLSGDPKQCRTAEI 720
           +H F +GD     T +I
Sbjct: 914 VHAFYAGDKLHPLTNQI 930



 Score =  192 bits (489), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 146/598 (24%), Positives = 283/598 (47%), Gaps = 88/598 (14%)

Query: 28  SGRVEEAIKIFSQMSQKN----TVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSM 83
           SG + E +++  ++S+       +  +S++  Y ++G  + A K+F++   R++ SWN M
Sbjct: 71  SGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKM 130

Query: 84  IAGYLHNDKVKEARELFDKMF----RPDLFSWA-LMITC--------YTRKGELEKAREL 130
           I  ++      +   LF +M      P+ +++A ++  C        Y ++         
Sbjct: 131 IHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYG 190

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           FD  P        N ++  Y+K G    AKK+ + +  K+IV+W +M+SG ++NG    A
Sbjct: 191 FDSSP-----LVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEA 245

Query: 191 SKFFEAMEERDVVSWNLMLDGYV-------------ELDDLDSAWKFFQKIPEQNVVSWV 237
              F  M   ++     +L   +             +L  L   W F  +    N     
Sbjct: 246 ILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCN----- 300

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ER 293
            +++ Y+R+ +++ A R+F  M  R+ V++N++I+  VQ+G  + A  LF +M     + 
Sbjct: 301 GLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKP 360

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA----QTAMISGYVQNKRMDEANQIF 349
           + ++  +++     +  L +  +L        ++A    + +++  Y +   ++ A++ F
Sbjct: 361 DCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFF 420

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-------------------------- 383
               T ++V WNVM+  Y Q   + ++  +FRQM                          
Sbjct: 421 LTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALY 480

Query: 384 -------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
                           ++   + +I  YA+  Q+  A++I   +    + VSW A+I+G+
Sbjct: 481 LGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRL-PEDDVVSWTAMIAGY 539

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
           +Q++   +AL++F  M   G + D+   A A+SACA + AL+ G+QIH  +  +G+  DL
Sbjct: 540 VQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADL 599

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
            + N+LI++YA+CGRIQ A L F+     + ISWNSL++G A +G   EA+++F  M+
Sbjct: 600 SINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRML 657



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 115/452 (25%), Positives = 219/452 (48%), Gaps = 36/452 (7%)

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
           +S++  Y ++G+ H A K F+    R V SWN M+  +V        +  F+++  + + 
Sbjct: 97  DSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGIT 156

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
                 +GY   G +        +  +   +A+N     YV++      +R F    + +
Sbjct: 157 P-----NGYTFAGVL--------KACVGGDIAFN-----YVKQVH----SRTFYYGFDSS 194

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
           P+    +ID Y +   ++ A+++ + +  K+I    AMISG  QN   +EA  +F  +  
Sbjct: 195 PLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHA 254

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQM--------VNKDIVTWNTMIAGYAQIRQMDD 406
            ++     ++          +   L  Q+         + +    N ++A Y++ R++  
Sbjct: 255 SEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLIS 314

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
           A +IF  M   R+ VS+N+LISG +Q  F   AL++F  M ++  K D  T+A  LSACA
Sbjct: 315 AERIFSTMNS-RDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACA 373

Query: 467 HLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNS 526
            + AL  G Q+H  AIK+G   D+ +  SL+ +Y+KC  ++ A   F   +  +++ WN 
Sbjct: 374 SVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNV 433

Query: 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVY 586
           ++  Y    N +++ ++F +M MEG+ P+  T+  +L  C+ +G +  G ++    T V 
Sbjct: 434 MLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIH---THVI 490

Query: 587 AIEPLVEHYAC--MIDLLSRAGRLDEAFEMVK 616
                +  Y C  +ID+ ++ G+L  A  +++
Sbjct: 491 KTGFQLNVYVCSVLIDMYAKYGQLALALRILR 522



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 9/189 (4%)

Query: 430 FLQNEFHLDA-----LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
           F Q   H++      +++   M + G ++++      L  C    +L    ++H    KS
Sbjct: 28  FDQTTLHMEQGKSKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKS 87

Query: 485 GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLF 544
           G+  +  + +SL+  Y + G    A  +F +     V SWN +I  +    +  +   LF
Sbjct: 88  GFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLF 147

Query: 545 EEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE--PLVEHYACMIDLL 602
             M+ EG+ P+  TF GVL AC    +    +K     T  Y  +  PLV +   +IDL 
Sbjct: 148 RRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANL--LIDLY 205

Query: 603 SRAGRLDEA 611
           S+ G ++ A
Sbjct: 206 SKNGYIESA 214


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 240/737 (32%), Positives = 396/737 (53%), Gaps = 40/737 (5%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I    K+G +E A K+F+ +  K+ VT+ +MIS  ++NG   +A  LF  M    + 
Sbjct: 199 NLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIF 258

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM--------FRPDLFSWALMITCYTRKGELEKAREL 130
               +++  L      +  EL +++        F  + +    ++  Y+R  +L  A  +
Sbjct: 259 PTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERI 318

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP----SKNIVSWNSMLSGYTKNGE 186
           F  + N  D   +N++++G  + G  + A +L   M       + ++  S+LS     G 
Sbjct: 319 FSTM-NSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGA 377

Query: 187 MH----LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG 242
           +H    L S   +A    D++    +LD Y +  D+++A KFF     +N+V W  ML  
Sbjct: 378 LHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVA 437

Query: 243 YARNGRMLEARRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERN 294
           Y +   + ++  +F QM     I N   + +++      G +    ++   +     + N
Sbjct: 438 YGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLN 497

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
               + +ID Y +  +L  A R+L ++P  ++ + TAMI+GYVQ+    EA Q+F+++  
Sbjct: 498 VYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEY 557

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQM-----------VNKDIVTWNTMIAGYAQIRQ 403
             +   N+   G+A        I   RQ               D+   N +I+ YA+  +
Sbjct: 558 RGIQFDNI---GFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGR 614

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS 463
           + +A   FE++G + N +SWN+L+SG  Q+ +  +AL++FV M +   + +  T   A+S
Sbjct: 615 IQEAYLAFEKIGDK-NNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAIS 673

Query: 464 ACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
           A A LA ++ G+QIH + +K+GY ++  V NSLI++YAK G I +A   F D    +VIS
Sbjct: 674 AAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVIS 733

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMT 583
           WN++I GY+ +G   EA++LFEEM + G+ P+ VTF+GVLSACSH+GLV  GL  FE M 
Sbjct: 734 WNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMF 793

Query: 584 EVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLG 643
           +++ + P  EHY C++DLL RAG+LD A E +K M I  +A IW TLL AC +H+NI++G
Sbjct: 794 KIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIG 853

Query: 644 RIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQ 703
             A   L ELEP+ ++ Y L+SN++A + +W   +  R  M+  G +K+PG SWIEVKN 
Sbjct: 854 ERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNA 913

Query: 704 IHTFLSGDPKQCRTAEI 720
           +H F +GD     T +I
Sbjct: 914 VHAFYAGDKLHPLTNQI 930



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 146/598 (24%), Positives = 283/598 (47%), Gaps = 88/598 (14%)

Query: 28  SGRVEEAIKIFSQMSQKN----TVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSM 83
           SG + E +++  ++S+       +  +S++  Y ++G  + A K+F++   R++ SWN M
Sbjct: 71  SGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKM 130

Query: 84  IAGYLHNDKVKEARELFDKMF----RPDLFSWA-LMITC--------YTRKGELEKAREL 130
           I  ++      +   LF +M      P+ +++A ++  C        Y ++         
Sbjct: 131 IHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYG 190

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           FD  P        N ++  Y+K G    AKK+ + +  K+IV+W +M+SG ++NG    A
Sbjct: 191 FDSSP-----LVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEA 245

Query: 191 SKFFEAMEERDVVSWNLMLDGYV-------------ELDDLDSAWKFFQKIPEQNVVSWV 237
              F  M   ++     +L   +             +L  L   W F  +    N     
Sbjct: 246 ILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCN----- 300

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ER 293
            +++ Y+R+ +++ A R+F  M  R+ V++N++I+  VQ+G  + A  LF +M     + 
Sbjct: 301 GLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKP 360

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA----QTAMISGYVQNKRMDEANQIF 349
           + ++  +++     +  L +  +L        ++A    + +++  Y +   ++ A++ F
Sbjct: 361 DCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFF 420

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-------------------------- 383
               T ++V WNVM+  Y Q   + ++  +FRQM                          
Sbjct: 421 LXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALY 480

Query: 384 -------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
                           ++   + +I  YA+  Q+  A++I   +    + VSW A+I+G+
Sbjct: 481 LGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRL-PEDDVVSWTAMIAGY 539

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
           +Q++   +AL++F  M   G + D+   A A+SACA + AL+ G+QIH  +  +G+  DL
Sbjct: 540 VQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADL 599

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
            + N+LI++YA+CGRIQ A L F+     + ISWNSL++G A +G   EA+++F  M+
Sbjct: 600 SINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRML 657



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 115/452 (25%), Positives = 219/452 (48%), Gaps = 36/452 (7%)

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
           +S++  Y ++G+ H A K F+    R V SWN M+  +V        +  F+++  + + 
Sbjct: 97  DSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGIT 156

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
                 +GY   G +        +  +   +A+N     YV++      +R F    + +
Sbjct: 157 P-----NGYTFAGVL--------KACVGGDIAFN-----YVKQVH----SRTFYYGFDSS 194

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
           P+    +ID Y +   ++ A+++ + +  K+I    AMISG  QN   +EA  +F  +  
Sbjct: 195 PLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHA 254

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQM--------VNKDIVTWNTMIAGYAQIRQMDD 406
            ++     ++          +   L  Q+         + +    N ++A Y++ R++  
Sbjct: 255 SEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLIS 314

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
           A +IF  M   R+ VS+N+LISG +Q  F   AL++F  M ++  K D  T+A  LSACA
Sbjct: 315 AERIFSTMNS-RDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACA 373

Query: 467 HLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNS 526
            + AL  G Q+H  AIK+G   D+ +  SL+ +Y+KC  ++ A   F   +  +++ WN 
Sbjct: 374 SVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNV 433

Query: 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVY 586
           ++  Y    N +++ ++F +M MEG+ P+  T+  +L  C+ +G +  G ++    T V 
Sbjct: 434 MLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIH---THVI 490

Query: 587 AIEPLVEHYAC--MIDLLSRAGRLDEAFEMVK 616
                +  Y C  +ID+ ++ G+L  A  +++
Sbjct: 491 KTGFQLNVYVCSVLIDMYAKYGQLALALRILR 522



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 9/189 (4%)

Query: 430 FLQNEFHLDA-----LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
           F Q   H++      +++   M + G ++++      L  C    +L    ++H    KS
Sbjct: 28  FDQTTLHMEQGKSKRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKS 87

Query: 485 GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLF 544
           G+  +  + +SL+  Y + G    A  +F +     V SWN +I  +    +  +   LF
Sbjct: 88  GFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLF 147

Query: 545 EEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE--PLVEHYACMIDLL 602
             M+ EG+ P+  TF GVL AC    +    +K     T  Y  +  PLV +   +IDL 
Sbjct: 148 RRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANL--LIDLY 205

Query: 603 SRAGRLDEA 611
           S+ G ++ A
Sbjct: 206 SKNGYIESA 214


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/641 (32%), Positives = 359/641 (56%), Gaps = 67/641 (10%)

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           DT+  N  V  + K G  ++A++L + MP KN VS N M+SGY K+G +  A K F+ M 
Sbjct: 46  DTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMV 105

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSGYARNGRMLEARR 254
           ER  V+W +++ GY +L+    A++ F ++     E + V++VT+LSG   NG  +  + 
Sbjct: 106 ERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGC--NGHEMGNQI 163

Query: 255 LFDQMPI------RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRI 308
              Q  I        ++  N ++ +Y +  +++ A +LF EMPE +  ++  ++   + +
Sbjct: 164 TQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCANIGL 223

Query: 309 AKLDEARRLLDQMPYK---------NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
             +     +L Q  +          N+    A++  Y ++  + +A ++FD++   D V 
Sbjct: 224 DDI-----VLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVS 278

Query: 360 WNVMIKGYAQCGRMDEAINLFRQM------------------------------------ 383
           +NV+I GYA  G+   A +LFR++                                    
Sbjct: 279 YNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTI 338

Query: 384 ---VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
               + +I+  N+++  YA+  + ++A  IF  +   R+ V W A+IS ++Q  F+ + L
Sbjct: 339 VTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNL-THRSAVPWTAMISAYVQKGFYEEGL 397

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500
           ++F  M Q    AD +T A  L A A +A+L LG+Q+H   IKSG+++++F G++L+ +Y
Sbjct: 398 QLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVY 457

Query: 501 AKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
           AKCG I++A   F++    +++SWN++I+ YA NG A   +K F+EMV+ G+ PD V+F+
Sbjct: 458 AKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFL 517

Query: 561 GVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKI 620
           GVLSACSH GLV+ GL  F  MT++Y ++P  EHYA ++D+L R+GR +EA +++  M I
Sbjct: 518 GVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPI 577

Query: 621 KPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSC-YALLSNMHAEAGRWDEVEK 679
            P+  +W ++L ACR+H+N +L R A ++L  +E  + +  Y  +SN++A AG+W+ V K
Sbjct: 578 DPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSK 637

Query: 680 VRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           V  +M   G +K P  SW+E+K++ H F + D    +  EI
Sbjct: 638 VHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEI 678



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 148/586 (25%), Positives = 261/586 (44%), Gaps = 108/586 (18%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N ++    K+G + +A ++F +M  KNTV+ N MIS Y K+G + +ARKLF+ M +R  V
Sbjct: 51  NFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAV 110

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMIT-C--YTRKGELEKARELF 131
           +W  +I GY   ++ KEA ELF +M R    PD  ++  +++ C  +    ++ + +   
Sbjct: 111 TWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQI 170

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
             L         N +V  Y K    + A +L   MP  +  ++ ++L       ++ L  
Sbjct: 171 IKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCANIGLDDIVLGQ 230

Query: 192 KFFEAMEERDVVSWNL-----MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARN 246
           +    + + + V WN+     +LD Y + D +  A K F ++PEQ+ VS+  ++SGYA +
Sbjct: 231 QIHSFVIKTNFV-WNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWD 289

Query: 247 GRMLEARRLF----------DQMPI-------RNVVAW---------------------- 267
           G+   A  LF           Q P         N + W                      
Sbjct: 290 GKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVG 349

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
           N+++  Y + G+ EEA  +F  +  R+ V WT MI  YV+    +E  +L ++M   ++ 
Sbjct: 350 NSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVI 409

Query: 328 AQTAMISGYVQNK----RMDEANQIFDKI----GTHDVVCWNVMIKGYAQCGRMDEAINL 379
           A  A  +  ++       +    Q+   I       +V   + ++  YA+CG + +A+  
Sbjct: 410 ADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQT 469

Query: 380 FRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDA 439
           F++M +++IV+WN MI+ YAQ  + +  +K F+EM           ++SG          
Sbjct: 470 FQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEM-----------VLSGL--------- 509

Query: 440 LKIFVLMTQEGKKADHSTLACALSACAHLAALQLG-------RQIHHLAIKSGYVNDLFV 492
                       + D  +    LSAC+H   ++ G        QI+ L  +  +      
Sbjct: 510 ------------QPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHY----- 552

Query: 493 GNSLITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAINGN 536
             S++ M  + GR   AE L  +   DP D I W+S++    I+ N
Sbjct: 553 -ASVVDMLCRSGRFNEAEKLMAEMPIDP-DEIMWSSVLNACRIHKN 596



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 172/382 (45%), Gaps = 72/382 (18%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLF----- 69
           VF  N  +    K   V +A K+F +M +++ V+YN +IS YA +G+   A  LF     
Sbjct: 245 VFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQF 304

Query: 70  -----EQMP-------QRNLVSW----------------------NSMIAGYLHNDKVKE 95
                +Q P         N + W                      NS++  Y    K +E
Sbjct: 305 TAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEE 364

Query: 96  ARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAK 152
           A  +F  +       W  MI+ Y +KG  E+  +LF+ +       D A + +++   A 
Sbjct: 365 AEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASAS 424

Query: 153 IGNYNEAKKL----LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLM 208
           I + +  K+L    + +    N+ S +++L  Y K G +  A + F+ M +R++VSWN M
Sbjct: 425 IASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAM 484

Query: 209 LDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQM----- 259
           +  Y +  + ++  K F+++     + + VS++ +LS  + +G + E    F+ M     
Sbjct: 485 ISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYK 544

Query: 260 --PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMIDGYVRIAKLDE-AR 315
             P R   A  +++    + G+  EA +L  EMP + + + W+++++   RI K  E AR
Sbjct: 545 LDPRREHYA--SVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNA-CRIHKNQELAR 601

Query: 316 RLLDQM----------PYKNIA 327
           R  DQ+          PY N++
Sbjct: 602 RAADQLFNMEELRDAAPYVNMS 623



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 97/203 (47%), Gaps = 13/203 (6%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S VF+ +  +    K G +++A++ F +M  +N V++N+MISAYA+NG      K F++M
Sbjct: 445 SNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEM 504

Query: 73  P----QRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGE 123
                Q + VS+  +++   H+  V+E    F+ M       P    +A ++    R G 
Sbjct: 505 VLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGR 564

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS----KNIVSWNSMLS 179
             +A +L   +P   D   W++++       N   A++  D + +    ++   + +M +
Sbjct: 565 FNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSN 624

Query: 180 GYTKNGEMHLASKFFEAMEERDV 202
            Y   G+    SK  +AM +R V
Sbjct: 625 IYAAAGQWENVSKVHKAMRDRGV 647



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 47/199 (23%)

Query: 462 LSACAHLAALQLGR-------QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
           L++   LA+LQ  +        I    +K+G+  D    N  +  + K G +  A  LF+
Sbjct: 12  LTSLTSLASLQSPKLRLNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFE 71

Query: 515 DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME------------------------ 550
                + +S N +I+GY  +GN  EA KLF+ MV                          
Sbjct: 72  KMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFEL 131

Query: 551 -------GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV----YAIEPLVEHYACMI 599
                  G  PD VTF+ +LS C+   +   G ++ +  T++    Y    +V +   ++
Sbjct: 132 FVQMQRCGTEPDYVTFVTLLSGCNGHEM---GNQITQVQTQIIKLGYDSRLIVGN--TLV 186

Query: 600 DLLSRAGRLDEAFEMVKGM 618
           D   ++ RLD A ++ K M
Sbjct: 187 DSYCKSNRLDLACQLFKEM 205


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 217/678 (32%), Positives = 353/678 (52%), Gaps = 74/678 (10%)

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKMFRPDL--FSWALMITCYTRKGELEKARELFDLL 134
           +  +N  I  +     ++ A EL ++  +PDL   ++  ++        ++  R +  ++
Sbjct: 68  ITDYNIEICRFCELGNLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSII 127

Query: 135 PNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG------ 185
            + +   D    + +V  Y   G+  E +++ D + ++ +  WN +++GY K G      
Sbjct: 128 QSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESL 187

Query: 186 ------------EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI----P 229
                        +  A K F+ + +RDV+SWN M+ GYV     +     F+++     
Sbjct: 188 SLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGI 247

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQMPI----RNVVAWNAMIAAYVQRGQIEEAAR 285
             ++ + V++++G +  G +L  R L          + +   N ++  Y + G +  A +
Sbjct: 248 NTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQ 307

Query: 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMI---------SGY 336
           +F  M ER+ VSWT+MI GY R    D + RL  +M  + I+     I         +G 
Sbjct: 308 VFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGL 367

Query: 337 VQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIA 396
           ++N + D  N I +     D+   N ++  YA+CG M +A ++F +M  KDIV+WNTMI 
Sbjct: 368 LENGK-DVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIG 426

Query: 397 GYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHS 456
           GY++    ++A+ +F EM                                 Q   K +  
Sbjct: 427 GYSKNSLPNEALNLFVEM---------------------------------QYNSKPNSI 453

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
           T+AC L ACA LAAL+ G++IH   +++G+  D  V N+L+ MY KCG +  A LLF   
Sbjct: 454 TMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMI 513

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGL 576
              D++SW  +IAGY ++G  +EAI  F EM   G+ PD V+FI +L ACSH GL+D G 
Sbjct: 514 PEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGW 573

Query: 577 KLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRM 636
             F  M     IEP  EHYAC++DLL+RAG L +A++ +K M I+P+A IWG LL  CR+
Sbjct: 574 GFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRI 633

Query: 637 HQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCS 696
           + ++KL     E + ELEP+ T  Y LL+N++AEA +W+EV+K+R  +   G +K PGCS
Sbjct: 634 YHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCS 693

Query: 697 WIEVKNQIHTFLSGDPKQ 714
           WIE+K ++H F++GD   
Sbjct: 694 WIEIKGKVHIFVTGDSSH 711



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/400 (26%), Positives = 188/400 (47%), Gaps = 40/400 (10%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG------------------RVNDARKLFE 70
           G + E  +IF +++ +    +N +++ YAK G                  RV  ARKLF+
Sbjct: 150 GDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFD 209

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEK 126
           ++  R+++SWNSMI+GY+ N   ++  +LF++M       DL +   ++   +  G L  
Sbjct: 210 ELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLL 269

Query: 127 ARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK 183
            R L          ++    N ++  Y+K GN N A ++ + M  +++VSW SM++GY +
Sbjct: 270 GRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAR 329

Query: 184 NGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV-- 237
            G   ++ + F  ME+     D+ +   +L        L++       I E  + S +  
Sbjct: 330 EGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFV 389

Query: 238 --TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM---PE 292
              ++  YA+ G M +A  +F +M ++++V+WN MI  Y +     EA  LF+EM    +
Sbjct: 390 SNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNSK 449

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA----AQTAMISGYVQNKRMDEANQI 348
            N ++   ++     +A L+  + +   +     +       A++  Y++   +  A  +
Sbjct: 450 PNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLL 509

Query: 349 FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
           FD I   D+V W VMI GY   G   EAI  F +M N  I
Sbjct: 510 FDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGI 549



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 186/408 (45%), Gaps = 40/408 (9%)

Query: 47  VTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGY------------------L 88
           V  + ++  Y   G + + R++F+++    +  WN ++ GY                  L
Sbjct: 137 VLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMREL 196

Query: 89  HNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD---LLPNKEDTACWNA 145
              +V+ AR+LFD++   D+ SW  MI+ Y   G  EK  +LF+   LL    D A   +
Sbjct: 197 GIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVS 256

Query: 146 MVAGYAKIGNYNEAKKL----LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
           +VAG +  G     + L    + A   K +   N +L  Y+K+G ++ A + FE M ER 
Sbjct: 257 VVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERS 316

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARNGRMLEARRLFD 257
           VVSW  M+ GY      D + + F ++ ++    ++ +  T+L   A  G +   + + +
Sbjct: 317 VVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHN 376

Query: 258 QMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDE 313
            +       ++   NA++  Y + G + +A  +F EM  ++ VSW TMI GY + +  +E
Sbjct: 377 YIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNE 436

Query: 314 ARRLLDQMPYK---NIAAQTAMISGYVQNKRMDEANQIFDKI----GTHDVVCWNVMIKG 366
           A  L  +M Y    N      ++        ++   +I   I     + D    N ++  
Sbjct: 437 ALNLFVEMQYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDM 496

Query: 367 YAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           Y +CG +  A  LF  +  KD+V+W  MIAGY       +A+  F EM
Sbjct: 497 YLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEM 544



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 136/303 (44%), Gaps = 19/303 (6%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           Q +    N+++  YAK G + DA  +F +M  +++VSWN+MI GY  N    EA  LF +
Sbjct: 384 QSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVE 443

Query: 103 M---FRPDLFSWALMITCYTRKGELEKARELF-DLLPN--KEDTACWNAMVAGYAKIGNY 156
           M    +P+  + A ++        LE+ +E+   +L N    D    NA+V  Y K G  
Sbjct: 444 MQYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGAL 503

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGY 212
             A+ L D +P K++VSW  M++GY  +G    A   F  M     E D VS+  +L   
Sbjct: 504 GLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYAC 563

Query: 213 VELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPIR-NVVA 266
                LD  W FF  +     +      +  ++   AR G + +A +    MPI  +   
Sbjct: 564 SHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATI 623

Query: 267 WNAMIAA---YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
           W A++     Y      E+ A    E+   N   +  + + Y    K +E ++L +++  
Sbjct: 624 WGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGR 683

Query: 324 KNI 326
           + +
Sbjct: 684 RGL 686



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 141/311 (45%), Gaps = 45/311 (14%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           KSG +  AI++F  M +++ V++ SMI+ YA+ G  + + +LF +M +  +         
Sbjct: 298 KSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGI--------- 348

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACW 143
                              PD+F+   ++      G LE  +++ + +     + D    
Sbjct: 349 ------------------SPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVS 390

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME---ER 200
           NA++  YAK G+  +A  +   M  K+IVSWN+M+ GY+KN   + A   F  M+   + 
Sbjct: 391 NALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNSKP 450

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKI------PEQNVVSWVTMLSGYARNGRMLEARR 254
           + ++   +L     L  L+   +    I       +++V +   ++  Y + G +  AR 
Sbjct: 451 NSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVAN--ALVDMYLKCGALGLARL 508

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAK 310
           LFD +P +++V+W  MIA Y   G   EA   F EM     E + VS+ +++        
Sbjct: 509 LFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGL 568

Query: 311 LDEARRLLDQM 321
           LDE     + M
Sbjct: 569 LDEGWGFFNMM 579



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 18/247 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F  N  +    K G + +A  +FS+M  K+ V++N+MI  Y+KN   N+A  LF +M
Sbjct: 385 SDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEM 444

Query: 73  ---PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELE 125
               + N ++   ++        ++  +E+   + R     D      ++  Y + G L 
Sbjct: 445 QYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALG 504

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGY 181
            AR LFD++P K D   W  M+AGY   G  +EA    + M +  I    VS+ S+L   
Sbjct: 505 LARLLFDMIPEK-DLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYAC 563

Query: 182 TKNGEMHLASKFFEAMEERDVVS-----WNLMLDGYVELDDLDSAWKFFQKIP-EQNVVS 235
           + +G +     FF  M     +      +  ++D      +L  A+KF + +P E +   
Sbjct: 564 SHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATI 623

Query: 236 WVTMLSG 242
           W  +L G
Sbjct: 624 WGALLCG 630


>gi|356519676|ref|XP_003528496.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 728

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 219/664 (32%), Positives = 364/664 (54%), Gaps = 55/664 (8%)

Query: 120 RKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWN 175
           + G+LE+AR LFD +PN+  ++ WN M++GY+ +G Y EA  L+  M       N VS++
Sbjct: 53  KMGKLEEARHLFDQMPNRTVSS-WNTMISGYSLLGRYPEALTLVSFMHRSCVALNEVSFS 111

Query: 176 SMLSGYTKNGEMHLA----SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ 231
           ++LS   ++G   L     S   ++  ER  +  + +L   V    +  A   F+++ + 
Sbjct: 112 AVLSACARSGSFLLGKQVHSLLLKSGYERFGLVGSALLYFCVHCCGIREAEVVFEELRDG 171

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ-IEEAARLFIEM 290
           N V W  ML+GY +   M +A  +F++MP+R+VVAW  +I+ Y +R    E A  LF  M
Sbjct: 172 NQVLWSLMLAGYVKQDMMDDAMDMFEKMPVRDVVAWTTLISGYAKREDGCERALDLFGCM 231

Query: 291 ---PERNPVSWTTMIDGYVRIAK------------------------------------- 310
               E  P  +T  +D  VR+                                       
Sbjct: 232 RRSSEVLPNEFT--LDCVVRVCARLGVLRAGKVVHGLCIKGGLDFDNSIGGAVTEFYCGC 289

Query: 311 --LDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367
             +D+A+R+ + M  + ++    ++I G V   R++EA  +F ++   + V +N+MIKGY
Sbjct: 290 EAIDDAKRVYESMGGQASLNVANSLIGGLVSKGRIEEAELVFYELRETNPVSYNLMIKGY 349

Query: 368 AQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
           A  G+ +++  LF +M  +++ + NTMI+ Y++  ++D+AVK+F++    RN VSWN+++
Sbjct: 350 AMSGQFEKSKRLFEKMSPENLTSLNTMISVYSKNGELDEAVKLFDKTKGERNYVSWNSMM 409

Query: 428 SGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV 487
           SG++ N  + +AL ++V M +       ST +    AC+ L + + G+ +H   IK+ + 
Sbjct: 410 SGYIINGKYKEALNLYVAMRRLSVDYSRSTFSVLFRACSCLCSFRQGQLLHAHLIKTPFQ 469

Query: 488 NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
            +++VG +L+  Y+KCG +  A+  F      +V +W +LI GYA +G  +EAI LF  M
Sbjct: 470 VNVYVGTALVDFYSKCGHLAEAQRSFISIFSPNVAAWTALINGYAYHGLGSEAILLFRSM 529

Query: 548 VMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGR 607
           + +G+ P+  TF+GVLSAC+H GLV  GL++F  M   Y + P +EHY C++DLL R+G 
Sbjct: 530 LHQGIVPNAATFVGVLSACNHAGLVCEGLRIFHSMQRCYGVTPTIEHYTCVVDLLGRSGH 589

Query: 608 LDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNM 667
           L EA E +  M I+ +  IWG LL A    +++++G  A EKL  L+P     + +LSNM
Sbjct: 590 LKEAEEFIIKMPIEADGIIWGALLNASWFWKDMEVGERAAEKLFSLDPNPIFAFVVLSNM 649

Query: 668 HAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
           +A  GRW +  K+R  ++    +K PGCSWIE+ N+IH F   D     +  I  T++ +
Sbjct: 650 YAILGRWGQKTKLRKRLQSLELRKDPGCSWIELNNKIHLFSVEDKTHLYSDVIYATVEHI 709

Query: 728 AAQI 731
            A I
Sbjct: 710 TATI 713



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 144/586 (24%), Positives = 254/586 (43%), Gaps = 114/586 (19%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           N ++ N  I+   K G++ +AR LF+QMP R + SWN+MI+GY    +  EA  L   M 
Sbjct: 40  NVISTNISIAQRFKMGKLEEARHLFDQMPNRTVSSWNTMISGYSLLGRYPEALTLVSFMH 99

Query: 105 RPDL----FSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIG------ 154
           R  +     S++ +++   R G     +++  LL           + +GY + G      
Sbjct: 100 RSCVALNEVSFSAVLSACARSGSFLLGKQVHSLL-----------LKSGYERFGLVGSAL 148

Query: 155 --------NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN 206
                      EA+ + + +   N V W+ ML+GY K   M  A   FE M  RDVV+W 
Sbjct: 149 LYFCVHCCGIREAEVVFEELRDGNQVLWSLMLAGYVKQDMMDDAMDMFEKMPVRDVVAWT 208

Query: 207 LMLDGYVELDD-LDSAWKFF-------QKIPEQNVVSWVTMLS---GYARNGRML----- 250
            ++ GY + +D  + A   F       + +P +  +  V  +    G  R G+++     
Sbjct: 209 TLISGYAKREDGCERALDLFGCMRRSSEVLPNEFTLDCVVRVCARLGVLRAGKVVHGLCI 268

Query: 251 -------------------------EARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAA 284
                                    +A+R+++ M  + ++   N++I   V +G+IEEA 
Sbjct: 269 KGGLDFDNSIGGAVTEFYCGCEAIDDAKRVYESMGGQASLNVANSLIGGLVSKGRIEEAE 328

Query: 285 RLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDE 344
            +F E+ E NPVS+  MI GY    + ++++RL ++M  +N+ +   MIS Y +N  +DE
Sbjct: 329 LVFYELRETNPVSYNLMIKGYAMSGQFEKSKRLFEKMSPENLTSLNTMISVYSKNGELDE 388

Query: 345 ANQIFDKI-GTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-------------------- 383
           A ++FDK  G  + V WN M+ GY   G+  EA+NL+  M                    
Sbjct: 389 AVKLFDKTKGERNYVSWNSMMSGYIINGKYKEALNLYVAMRRLSVDYSRSTFSVLFRACS 448

Query: 384 -------------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
                                 ++     ++  Y++   + +A + F  +    N  +W 
Sbjct: 449 CLCSFRQGQLLHAHLIKTPFQVNVYVGTALVDFYSKCGHLAEAQRSFISIFS-PNVAAWT 507

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
           ALI+G+  +    +A+ +F  M  +G   + +T    LSAC H   +  G +I H   + 
Sbjct: 508 ALINGYAYHGLGSEAILLFRSMLHQGIVPNAATFVGVLSACNHAGLVCEGLRIFHSMQRC 567

Query: 485 -GYVNDLFVGNSLITMYAKCGRIQNA-ELLFKDADPVDVISWNSLI 528
            G    +     ++ +  + G ++ A E + K     D I W +L+
Sbjct: 568 YGVTPTIEHYTCVVDLLGRSGHLKEAEEFIIKMPIEADGIIWGALL 613



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 112/411 (27%), Positives = 209/411 (50%), Gaps = 27/411 (6%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL-H 89
           + EA  +F ++   N V ++ M++ Y K   ++DA  +FE+MP R++V+W ++I+GY   
Sbjct: 158 IREAEVVFEELRDGNQVLWSLMLAGYVKQDMMDDAMDMFEKMPVRDVVAWTTLISGYAKR 217

Query: 90  NDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTA 141
            D  + A +LF  M R     P+ F+   ++    R G L   + +  L        D +
Sbjct: 218 EDGCERALDLFGCMRRSSEVLPNEFTLDCVVRVCARLGVLRAGKVVHGLCIKGGLDFDNS 277

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAM---PSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
              A+   Y      ++AK++ ++M    S N+   NS++ G    G +  A   F  + 
Sbjct: 278 IGGAVTEFYCGCEAIDDAKRVYESMGGQASLNVA--NSLIGGLVSKGRIEEAELVFYELR 335

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
           E + VS+NLM+ GY      + + + F+K+  +N+ S  TM+S Y++NG + EA +LFD+
Sbjct: 336 ETNPVSYNLMIKGYAMSGQFEKSKRLFEKMSPENLTSLNTMISVYSKNGELDEAVKLFDK 395

Query: 259 MP-IRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDE 313
               RN V+WN+M++ Y+  G+ +EA  L++ M     + +  +++ +      +    +
Sbjct: 396 TKGERNYVSWNSMMSGYIINGKYKEALNLYVAMRRLSVDYSRSTFSVLFRACSCLCSFRQ 455

Query: 314 ARRL---LDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ 369
            + L   L + P++ N+   TA++  Y +   + EA + F  I + +V  W  +I GYA 
Sbjct: 456 GQLLHAHLIKTPFQVNVYVGTALVDFYSKCGHLAEAQRSFISIFSPNVAAWTALINGYAY 515

Query: 370 CGRMDEAINLFRQMVNKDIV----TWNTMIAGYAQIRQMDDAVKIFEEMGK 416
            G   EAI LFR M+++ IV    T+  +++       + + ++IF  M +
Sbjct: 516 HGLGSEAILLFRSMLHQGIVPNAATFVGVLSACNHAGLVCEGLRIFHSMQR 566



 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 178/367 (48%), Gaps = 57/367 (15%)

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
           + NV++ N  IA   + G++EEA  LF +MP R   SW TMI GY  + +  EA  L+  
Sbjct: 38  VGNVISTNISIAQRFKMGKLEEARHLFDQMPNRTVSSWNTMISGYSLLGRYPEALTLVSF 97

Query: 321 MPYKNIA----AQTAMISGYVQNKRMDEANQI--------FDKIGTHDVVCWNVMIKGYA 368
           M    +A    + +A++S   ++       Q+        +++ G    +  + ++    
Sbjct: 98  MHRSCVALNEVSFSAVLSACARSGSFLLGKQVHSLLLKSGYERFG----LVGSALLYFCV 153

Query: 369 QCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
            C  + EA  +F ++ + + V W+ M+AGY +   MDDA+ +FE+M   R+ V+W  LIS
Sbjct: 154 HCCGIREAEVVFEELRDGNQVLWSLMLAGYVKQDMMDDAMDMFEKM-PVRDVVAWTTLIS 212

Query: 429 GFLQNEFHLD-ALKIFVLMTQEGKK-ADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
           G+ + E   + AL +F  M +  +   +  TL C +  CA L  L+ G+ +H L IK G 
Sbjct: 213 GYAKREDGCERALDLFGCMRRSSEVLPNEFTLDCVVRVCARLGVLRAGKVVHGLCIKGGL 272

Query: 487 VNDLFVGNSLITMYAKC--------------------------------GRIQNAELLFK 514
             D  +G ++   Y  C                                GRI+ AEL+F 
Sbjct: 273 DFDNSIGGAVTEFYCGCEAIDDAKRVYESMGGQASLNVANSLIGGLVSKGRIEEAELVFY 332

Query: 515 DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIG-VLSACSHVGLVD 573
           +    + +S+N +I GYA++G   ++ +LFE+M     +P+ +T +  ++S  S  G +D
Sbjct: 333 ELRETNPVSYNLMIKGYAMSGQFEKSKRLFEKM-----SPENLTSLNTMISVYSKNGELD 387

Query: 574 GGLKLFE 580
             +KLF+
Sbjct: 388 EAVKLFD 394



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 150/311 (48%), Gaps = 20/311 (6%)

Query: 31  VEEAIKIFSQMS-QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLH 89
           +++A +++  M  Q +    NS+I      GR+ +A  +F ++ + N VS+N MI GY  
Sbjct: 292 IDDAKRVYESMGGQASLNVANSLIGGLVSKGRIEEAELVFYELRETNPVSYNLMIKGYAM 351

Query: 90  NDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAG 149
           + + ++++ LF+KM   +L S   MI+ Y++ GEL++A +LFD    + +   WN+M++G
Sbjct: 352 SGQFEKSKRLFEKMSPENLTSLNTMISVYSKNGELDEAVKLFDKTKGERNYVSWNSMMSG 411

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLS---------GYTKNGEMHLASKFFEAMEER 200
           Y   G Y EA  L  AM   ++    S  S            + G++ L +   +   + 
Sbjct: 412 YIINGKYKEALNLYVAMRRLSVDYSRSTFSVLFRACSCLCSFRQGQL-LHAHLIKTPFQV 470

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM- 259
           +V     ++D Y +   L  A + F  I   NV +W  +++GYA +G   EA  LF  M 
Sbjct: 471 NVYVGTALVDFYSKCGHLAEAQRSFISIFSPNVAAWTALINGYAYHGLGSEAILLFRSML 530

Query: 260 ---PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVRIAKL 311
               + N   +  +++A    G + E  R+F  M     V+     +T ++D   R   L
Sbjct: 531 HQGIVPNAATFVGVLSACNHAGLVCEGLRIFHSMQRCYGVTPTIEHYTCVVDLLGRSGHL 590

Query: 312 DEARRLLDQMP 322
            EA   + +MP
Sbjct: 591 KEAEEFIIKMP 601



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 47/92 (51%)

Query: 479 HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNAT 538
           HL     +V ++   N  I    K G+++ A  LF       V SWN++I+GY++ G   
Sbjct: 30  HLQTTEPHVGNVISTNISIAQRFKMGKLEEARHLFDQMPNRTVSSWNTMISGYSLLGRYP 89

Query: 539 EAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
           EA+ L   M    VA + V+F  VLSAC+  G
Sbjct: 90  EALTLVSFMHRSCVALNEVSFSAVLSACARSG 121


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/627 (32%), Positives = 334/627 (53%), Gaps = 83/627 (13%)

Query: 181 YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
           +TK   +H  S   + +   +    N ++  Y +L  +  A K F ++P  N+ SW T+L
Sbjct: 25  FTKAKNLH--SHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTIL 82

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER------N 294
           S Y++ GR+ E   LFD MP R+ V+WN++I+ Y   G I ++ + +  M +       N
Sbjct: 83  SAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLN 142

Query: 295 PVSWTTM-----------------------------------IDGYVRIAKLDEARRLLD 319
            ++++T+                                   +D Y ++  +  AR++ D
Sbjct: 143 RITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFD 202

Query: 320 QMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
           ++P KN+     +I G ++  R++++ ++F ++   D + W  MI G+ Q G   +AI++
Sbjct: 203 ELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDI 262

Query: 380 FRQM---------------------------------------VNKDIVTWNTMIAGYAQ 400
           FR+M                                          +I   + ++  Y +
Sbjct: 263 FREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCK 322

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
            + +  A  +F++M   +N VSW A++ G+ QN +  +A+K F  M + G + D  TL  
Sbjct: 323 CKNIKSAEAVFKKM-TCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGS 381

Query: 461 ALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVD 520
            +S+CA+LA+L+ G Q H  A+ SG ++ + V N+L+T+Y KCG I+++  LF +    D
Sbjct: 382 VISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKD 441

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE 580
            ++W +L++GYA  G A E I LFE M+  G+ PD VTFIGVLSACS  GLV+ G ++FE
Sbjct: 442 EVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFE 501

Query: 581 CMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNI 640
            M   + I P+ +HY CMIDL SRAGR++EA   +  M   P+A  W TLL +CR + N+
Sbjct: 502 SMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNM 561

Query: 641 KLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEV 700
            +G+ A E L EL+P  T+ Y LLS+++A  G+W+EV ++R  M   G +K+PGCSWI+ 
Sbjct: 562 DIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKY 621

Query: 701 KNQIHTFLSGDPKQCRTAEICNTLKTL 727
           KNQ+H F + D     + +I + L+ L
Sbjct: 622 KNQVHVFSADDKSNPFSDQIYSELEKL 648



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 137/560 (24%), Positives = 248/560 (44%), Gaps = 94/560 (16%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           I   +    T   N++IS+YAK G +  A K+F+QMP  NL SWN++++ Y    +V E 
Sbjct: 35  IIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILSAYSKLGRVSEM 94

Query: 97  RELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWN------------ 144
             LFD M R D  SW  +I+ Y   G + ++ + ++L+   + +   N            
Sbjct: 95  EYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILAS 154

Query: 145 ----------------------------AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNS 176
                                        +V  Y+K+G  + A+K+ D +P KN+V +N+
Sbjct: 155 KRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNT 214

Query: 177 MLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLD-SAWKFFQKIPEQNV-- 233
           ++ G  + G +  + + F  M ERD +SW  M+ G+ + + LD  A   F+++  +N+  
Sbjct: 215 LIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQ-NGLDRDAIDIFREMKLENLQM 273

Query: 234 --VSWVTMLSGYARNGRMLEARRLFDQMPIR-----NVVAWNAMIAAYVQRGQIEEAARL 286
              ++ ++L+       + E +++   + IR     N+   +A++  Y +   I+ A  +
Sbjct: 274 DQYTFGSVLTACGGVMALQEGKQVHAYI-IRTDYKDNIFVASALVDMYCKCKNIKSAEAV 332

Query: 287 FIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT----AMISGYVQNKRM 342
           F +M  +N VSWT M+ GY +    +EA +    M    I        ++IS       +
Sbjct: 333 FKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASL 392

Query: 343 DEANQIFDKIGTHDVVCW----NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGY 398
           +E  Q   +  T  ++ +    N ++  Y +CG ++++  LF ++  KD VTW  +++GY
Sbjct: 393 EEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGY 452

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           AQ  + ++ + +FE                                 M   G K D  T 
Sbjct: 453 AQFGKANETIGLFES--------------------------------MLAHGLKPDKVTF 480

Query: 459 ACALSACAHLAALQLGRQIHHLAI-KSGYVNDLFVGNSLITMYAKCGRIQNAE-LLFKDA 516
              LSAC+    ++ G QI    I + G V        +I ++++ GRI+ A   + K  
Sbjct: 481 IGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMP 540

Query: 517 DPVDVISWNSLIAGYAINGN 536
              D ISW +L++     GN
Sbjct: 541 FSPDAISWATLLSSCRFYGN 560



 Score =  168 bits (426), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 127/520 (24%), Positives = 222/520 (42%), Gaps = 130/520 (25%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            F  N  I+   K G +  A K+F QM   N  ++N+++SAY+K GRV++   LF+ MP+
Sbjct: 44  TFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPR 103

Query: 75  RNLVSWNSMIAGY----------------LHNDK---------------------VKEAR 97
           R+ VSWNS+I+GY                L ND                      VK  R
Sbjct: 104 RDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLILASKRGCVKLGR 163

Query: 98  ELFDKMFRPDLFSWAL----MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKI 153
           ++   + +    S+      ++  Y++ G +  AR++FD LP K +   +N ++ G  + 
Sbjct: 164 QIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEK-NVVMYNTLIMGLMRC 222

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME--------------- 198
           G   ++K+L   M  ++ +SW SM++G+T+NG    A   F  M+               
Sbjct: 223 GRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVL 282

Query: 199 ------------------------ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
                                   + ++   + ++D Y +  ++ SA   F+K+  +NVV
Sbjct: 283 TACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVV 342

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMP---------------------------------- 260
           SW  ML GY +NG   EA + F  M                                   
Sbjct: 343 SWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARA 402

Query: 261 -----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR 315
                I  +   NA++  Y + G IE++ RLF E+  ++ V+WT ++ GY +  K +E  
Sbjct: 403 LTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETI 462

Query: 316 RLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDK-IGTHDVVC----WNVMIKG 366
            L + M    +         ++S   +   +++ NQIF+  I  H +V     +  MI  
Sbjct: 463 GLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDL 522

Query: 367 YAQCGRMDEAINLFRQM-VNKDIVTWNTMIAGYAQIRQMD 405
           +++ GR++EA N   +M  + D ++W T+++       MD
Sbjct: 523 FSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMD 562



 Score = 47.8 bits (112), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 5/124 (4%)

Query: 460 CAL-SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
           CAL   C         + +H   IK+    + F+ N+LI+ YAK G I  A  +F     
Sbjct: 13  CALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPH 72

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
            ++ SWN++++ Y+  G  +E   LF+ M       D V++  ++S  +  GL+   +K 
Sbjct: 73  PNLYSWNTILSAYSKLGRVSEMEYLFDAMPRR----DGVSWNSLISGYAGCGLIYQSVKA 128

Query: 579 FECM 582
           +  M
Sbjct: 129 YNLM 132


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 233/747 (31%), Positives = 386/747 (51%), Gaps = 64/747 (8%)

Query: 17  NQNKKITQLGKSGRVEEAIKIF--SQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           NQN KI +  + G +  AI++   S+  +    +Y S++   A+   + D +++   +  
Sbjct: 63  NQNAKINKFCEMGDLRNAIELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIIS 122

Query: 75  RNLVSWNSMIAG-----YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARE 129
            N +S +  +       Y++   + + R++FDK+    +F W L+++ Y + G   ++  
Sbjct: 123 -NGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVS 181

Query: 130 LFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL----LDAMPSKNIVSWNSMLSGYT 182
           LF  +       +   +  ++  +A +G   E K++    L      N    NS+++ Y 
Sbjct: 182 LFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYF 241

Query: 183 KNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVT 238
           K G +  A   F+ + E DVVSWN M++G V      +  + F ++     E ++ + V+
Sbjct: 242 KFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVS 301

Query: 239 MLSGYARNGRMLEARRL----FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
           +L   A  G +   R L            VV  N ++  Y + G +  A  +F++M +  
Sbjct: 302 VLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTT 361

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYK----NIAAQTAMISGYVQNKRMDEANQIFD 350
            VSWT++I  YVR     +A  L D+M  K    +I   T+++     +  +D+   +  
Sbjct: 362 IVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHS 421

Query: 351 KIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDD 406
            +  +    ++   N +I  YA+CG ++EA  +F ++  KDI                  
Sbjct: 422 YVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDI------------------ 463

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
                         VSWN +I G+ QN    +AL++F+ M Q+  K D  T+AC L ACA
Sbjct: 464 --------------VSWNTMIGGYSQNLLPNEALELFLDM-QKQFKPDDITMACVLPACA 508

Query: 467 HLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNS 526
            LAAL  GR+IH   ++ GY +DL V  +L+ MYAKCG +  A+LLF      D+ISW  
Sbjct: 509 GLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTV 568

Query: 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVY 586
           +IAGY ++G   EAI  F EM + G+ PD  +F  +L+ACSH GL++ G K F  M    
Sbjct: 569 MIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNEC 628

Query: 587 AIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIA 646
            +EP +EHYAC++DLL+R G L +A++ ++ M IKP+  IWG LL  CR+H ++KL    
Sbjct: 629 GVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKV 688

Query: 647 VEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHT 706
            E + ELEP  T  Y +L+N++AEA +W+EV+K+R  M+  G ++ PGCSWIEV  + + 
Sbjct: 689 AEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNI 748

Query: 707 FLSGDPKQCRTAEICNTLKTLAAQIRN 733
           F++G+ K  +  +I   L  L  Q++N
Sbjct: 749 FVAGNSKHPQAKKIDVLLSKLTMQMQN 775



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 146/313 (46%), Gaps = 28/313 (8%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS +   N  I    K G VEEA  +FS++  K+ V++N+MI  Y++N   N+A +LF  
Sbjct: 429 GSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLD 488

Query: 72  MPQR------NLVSWNSMIAGYLHNDKVKEAR-ELFDKMFRPDLFSWALMITCYTRKGEL 124
           M ++       +       AG    DK +E    +  + +  DL     ++  Y + G L
Sbjct: 489 MQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLL 548

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSG 180
             A+ LFD++P K+D   W  M+AGY   G  NEA    + M    I     S++++L+ 
Sbjct: 549 VLAQLLFDMIP-KKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNA 607

Query: 181 YTKNGEMHLASKFFEAME-----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-EQNVV 234
            + +G ++   KFF +M      E  +  +  ++D    + +L  A+KF + +P + +  
Sbjct: 608 CSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTT 667

Query: 235 SWVTMLSG--YARNGRMLE--ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
            W  +LSG     + ++ E  A  +F+  P  N   +  +   Y +  + EE  +L   M
Sbjct: 668 IWGVLLSGCRIHHDVKLAEKVAEHIFELEP-DNTRYYVVLANVYAEAEKWEEVKKLRKRM 726

Query: 291 PER----NP-VSW 298
            +R    NP  SW
Sbjct: 727 QKRGFKQNPGCSW 739


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 233/747 (31%), Positives = 386/747 (51%), Gaps = 64/747 (8%)

Query: 17   NQNKKITQLGKSGRVEEAIKIF--SQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            NQN KI +  + G +  AI++   S+  +    +Y S++   A+   + D +++   +  
Sbjct: 338  NQNAKINKFCEMGDLRNAIELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIIS 397

Query: 75   RNLVSWNSMIAG-----YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARE 129
             N +S +  +       Y++   + + R++FDK+    +F W L+++ Y + G   ++  
Sbjct: 398  -NGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVS 456

Query: 130  LFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL----LDAMPSKNIVSWNSMLSGYT 182
            LF  +       +   +  ++  +A +G   E K++    L      N    NS+++ Y 
Sbjct: 457  LFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYF 516

Query: 183  KNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVT 238
            K G +  A   F+ + E DVVSWN M++G V      +  + F ++     E ++ + V+
Sbjct: 517  KFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVS 576

Query: 239  MLSGYARNGRMLEARRL----FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
            +L  +A  G +   R L            VV  N ++  Y + G +  A  +F++M +  
Sbjct: 577  VLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTT 636

Query: 295  PVSWTTMIDGYVRIAKLDEARRLLDQMPYK----NIAAQTAMISGYVQNKRMDEANQIFD 350
             VSWT+ I  YVR     +A  L D+M  K    +I   T+++     +  +D+   +  
Sbjct: 637  IVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHS 696

Query: 351  KIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDD 406
             +  +    ++   N +I  YA+CG ++EA  +F ++  KDI                  
Sbjct: 697  YVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDI------------------ 738

Query: 407  AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
                          VSWN +I G+ QN    +AL++F+ M Q+  K D  T+AC L ACA
Sbjct: 739  --------------VSWNTMIGGYSQNSLPNEALELFLDM-QKQFKPDDITMACVLPACA 783

Query: 467  HLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNS 526
             LAAL  GR+IH   ++ GY +DL V  +L+ MYAKCG +  A+LLF      D+ISW  
Sbjct: 784  GLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTV 843

Query: 527  LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVY 586
            +IAGY ++G   EAI  F EM + G+ PD  +F  +L+ACSH GL++ G K F  M    
Sbjct: 844  MIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNEC 903

Query: 587  AIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIA 646
             +EP +EHYAC++DLL+R G L +A++ ++ M IKP+  IWG LL  CR+H ++KL    
Sbjct: 904  GVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKV 963

Query: 647  VEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHT 706
             E + ELEP  T  Y +L+N++AEA +W+EV+K+R  M+  G ++ PGCSWIEV  + + 
Sbjct: 964  AEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNI 1023

Query: 707  FLSGDPKQCRTAEICNTLKTLAAQIRN 733
            F++G+ K  +   I   L+ L  Q++N
Sbjct: 1024 FVAGNSKHPQAKRIDVLLRKLTMQMQN 1050



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 145/313 (46%), Gaps = 28/313 (8%)

Query: 12   GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
            GS +   N  I    K G VEEA  +FS++  K+ V++N+MI  Y++N   N+A +LF  
Sbjct: 704  GSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLD 763

Query: 72   MPQR------NLVSWNSMIAGYLHNDKVKEAR-ELFDKMFRPDLFSWALMITCYTRKGEL 124
            M ++       +       AG    DK +E    +  + +  DL     ++  Y + G L
Sbjct: 764  MQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLL 823

Query: 125  EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSG 180
              A+ LFD++P K+D   W  M+AGY   G  NEA    + M    I     S++ +L+ 
Sbjct: 824  VLAQLLFDMIP-KKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNA 882

Query: 181  YTKNGEMHLASKFFEAME-----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-EQNVV 234
             + +G ++   KFF +M      E  +  +  ++D    + +L  A+KF + +P + +  
Sbjct: 883  CSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTT 942

Query: 235  SWVTMLSG--YARNGRMLE--ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
             W  +LSG     + ++ E  A  +F+  P  N   +  +   Y +  + EE  +L   M
Sbjct: 943  IWGVLLSGCRIHHDVKLAEKVAEHIFELEP-DNTRYYVVLANVYAEAEKWEEVKKLRKRM 1001

Query: 291  PER----NP-VSW 298
             +R    NP  SW
Sbjct: 1002 QKRGFKQNPGCSW 1014


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/645 (33%), Positives = 350/645 (54%), Gaps = 62/645 (9%)

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV--- 202
           +V  Y K G+  E + + D +    I  WN M+S Y+ +G    +   F+ M E  +   
Sbjct: 191 LVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPN 250

Query: 203 -VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT----MLSGYARNGRMLEARRLFD 257
             +++ +L  +  +  ++   +    I +    S+ T    ++S Y    ++  A++LFD
Sbjct: 251 SYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFD 310

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN-PVSWTTMIDGYVRIAKLDEARR 316
           ++  R+V++WN+MI+ YV+ G  +    +FI+M      +   TM++ +V  A +     
Sbjct: 311 ELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANI--GTL 368

Query: 317 LLDQMPYK-NIAAQT---------AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG 366
           LL ++ +  +I A T          ++  Y +   ++ A ++F+++    VV W  MI G
Sbjct: 369 LLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITG 428

Query: 367 YAQCGRMDEAINLFRQMVNKDIV------------------------------------- 389
           Y + G  D AI LF +M ++ +V                                     
Sbjct: 429 YVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETN 488

Query: 390 --TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMT 447
               N +   YA+   M DA  +F  M K+++ +SWN +I G+ +N    +AL +F  M 
Sbjct: 489 SFVSNALTDMYAKCGSMKDAHDVFSHM-KKKDVISWNTMIGGYTKNSLPNEALTLFAEMQ 547

Query: 448 QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
           +E K  D +T+AC L ACA LAAL  GR+IH  A+++GY  D +V N+++ MY KCG + 
Sbjct: 548 RESK-PDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLV 606

Query: 508 NAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
            A  LF      D++SW  +IAGY ++G  +EAI  F +M M G+ PD V+FI +L ACS
Sbjct: 607 LARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACS 666

Query: 568 HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIW 627
           H GL+D G K+F  M +   IEP +EHYACM+DLL+R G L +A + +K M IKP+A IW
Sbjct: 667 HSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIW 726

Query: 628 GTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGS 687
           G LL  CR+H ++KL     E++ ELEP+ T  Y LL+N++AEA +W+EV+K+R  +   
Sbjct: 727 GALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQR 786

Query: 688 GAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           G +K PGCSWIE+K +I+ F++GD  + +  +I   LK L ++++
Sbjct: 787 GLKKNPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRLRSKMK 831



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 128/436 (29%), Positives = 203/436 (46%), Gaps = 35/436 (8%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYN----SMISAYAKNGRVNDARKL 68
           SY F+   K        RVEE  ++   + +    +YN    S+IS Y    +V  A+KL
Sbjct: 251 SYTFSSILKC--FAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKL 308

Query: 69  FEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM--FRPDLFSWALMITCYTRKGE--- 123
           F+++  R+++SWNSMI+GY+ N       E+F KM  F  D+   A M+  +        
Sbjct: 309 FDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDI-DLATMVNVFVACANIGT 367

Query: 124 --LEKARELFDLLPNKEDTACW--NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLS 179
             L K    + +     D      N ++  Y+K G+ N A ++ + M  K +VSW SM++
Sbjct: 368 LLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMIT 427

Query: 180 GYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV- 234
           GY + G    A K F+ M+ R    DV +   +L+      +L S       I E N+  
Sbjct: 428 GYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLET 487

Query: 235 -SWVT--MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
            S+V+  +   YA+ G M +A  +F  M  ++V++WN MI  Y +     EA  LF EM 
Sbjct: 488 NSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQ 547

Query: 292 ERNPVSWTT---MIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDE 344
             +    TT   ++     +A LD+ R +    L     ++     A++  YV+   +  
Sbjct: 548 RESKPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVL 607

Query: 345 ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQ 400
           A  +FD I   D+V W VMI GY   G   EAIN F QM    +  D V++ +++   + 
Sbjct: 608 ARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSH 667

Query: 401 IRQMDDAVKIFEEMGK 416
              +D+  KIF  M K
Sbjct: 668 SGLLDEGWKIFNIMKK 683



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 152/671 (22%), Positives = 269/671 (40%), Gaps = 178/671 (26%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIF--SQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP 73
            + ++KI +  + G ++ A+++   SQ S  +   Y S++   A+   + D R++     
Sbjct: 118 LDSSRKIVEFCEVGDLKNAMELLCSSQNSNFDLGAYCSILQLCAERKSIRDGRRV----- 172

Query: 74  QRNLV-SWNSMIAG---------YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGE 123
            R+++ S   MI G         Y+    +KE R +FDK+    +F W LMI+ Y+  G 
Sbjct: 173 -RSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGN 231

Query: 124 LEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNE---------------------- 158
             ++  LF     L  K ++  +++++  +A +    E                      
Sbjct: 232 YGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNS 291

Query: 159 -------------AKKLLDAMPSKNIVSWNSMLSGYTKNG-----------------EMH 188
                        A+KL D +  ++++SWNSM+SGY KNG                 ++ 
Sbjct: 292 LISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDID 351

Query: 189 LAS-----------------------KFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFF 225
           LA+                           A  +R+V   N +LD Y +  DL+SA + F
Sbjct: 352 LATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVF 411

Query: 226 QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV-------------------- 265
           +++ E+ VVSW +M++GY R G    A +LFD+M  R VV                    
Sbjct: 412 ERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLK 471

Query: 266 -------------------AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYV 306
                                NA+   Y + G +++A  +F  M +++ +SW TMI GY 
Sbjct: 472 SGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYT 531

Query: 307 RIAKLDEARRLLDQMPYKNIAAQT---AMISGYVQNKRMDEANQIFD---KIG-THDVVC 359
           + +  +EA  L  +M  ++    T    ++        +D+  +I     + G + D   
Sbjct: 532 KNSLPNEALTLFAEMQRESKPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYV 591

Query: 360 WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRN 419
            N ++  Y +CG +  A +LF  + NKD+V+W  MIAGY       +A+  F +      
Sbjct: 592 TNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQ------ 645

Query: 420 TVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHH 479
                                     M   G + D  +    L AC+H   L  G +I +
Sbjct: 646 --------------------------MRMTGIEPDEVSFISILYACSHSGLLDEGWKIFN 679

Query: 480 LAIKSGYVN-DLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGN 536
           +  K   +  +L     ++ + A+ G +  A    K A P+  D   W +L+ G  I+ +
Sbjct: 680 IMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIK-AMPIKPDATIWGALLCGCRIHHD 738

Query: 537 ATEAIKLFEEM 547
              A K+ E +
Sbjct: 739 VKLAEKVAERI 749



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 136/294 (46%), Gaps = 19/294 (6%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           + N+   N++   YAK G + DA  +F  M +++++SWN+MI GY  N    EA  LF +
Sbjct: 486 ETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAE 545

Query: 103 MFR---PDLFSWALMITCYTRKGELEKARELFDL-LPN--KEDTACWNAMVAGYAKIGNY 156
           M R   PD  + A ++        L+K RE+    L N   ED    NA+V  Y K G  
Sbjct: 546 MQRESKPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLL 605

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGY 212
             A+ L D +P+K++VSW  M++GY  +G    A   F  M     E D VS+  +L   
Sbjct: 606 VLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYAC 665

Query: 213 VELDDLDSAWKFFQKIP-----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVA 266
                LD  WK F  +      E N+  +  M+   AR G +++A +    MPI+ +   
Sbjct: 666 SHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATI 725

Query: 267 WNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL 317
           W A++        +   E+ A    E+   N   +  + + Y    K +E ++L
Sbjct: 726 WGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKL 779



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 67/132 (50%)

Query: 444 VLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
           +L + +    D       L  CA   +++ GR++  +   SG + D  +G  L+ MY KC
Sbjct: 139 LLCSSQNSNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKC 198

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
           G ++   ++F       +  WN +I+ Y+ +GN  E+I LF++M+  G+ P+  TF  +L
Sbjct: 199 GDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSIL 258

Query: 564 SACSHVGLVDGG 575
              + V  V+ G
Sbjct: 259 KCFAAVARVEEG 270


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 230/760 (30%), Positives = 387/760 (50%), Gaps = 67/760 (8%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           +F  M +++TV++N+M++AY+  G ++ A  LF+ MP  ++VSWN++++GY      +E+
Sbjct: 74  VFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQES 133

Query: 97  RELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAG 149
            +LF +M R    PD  ++A+++   +   EL    ++  L        D    +A+V  
Sbjct: 134 VDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDM 193

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSW 205
           Y K  + ++A      MP +N VSW + ++G  +N +     + F  M+   +     S+
Sbjct: 194 YGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSY 253

Query: 206 NLMLDGYVELDDLDSAWKFF-----QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
                    +  L++  +        K     VV    ++  YA+   + +ARR F  +P
Sbjct: 254 ASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVG-TAIVDVYAKANSLTDARRAFFGLP 312

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
              V   NAM+   V+ G   EA  LF  M  R+ + +  +    V  A  +       Q
Sbjct: 313 NHTVETSNAMMVGLVRAGLGIEAMGLFQFMI-RSSIRFDVVSLSGVFSACAETKGYFQGQ 371

Query: 321 MPY---------KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
             +          +I    A++  Y + K + EA  IF  +   D V WN +I    Q G
Sbjct: 372 QVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNG 431

Query: 372 RMDEAINLFRQMV----NKDIVTWNTMIAGYAQIRQM----------------------- 404
             D+ I  F +M+      D  T+ +++   A +R +                       
Sbjct: 432 HYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVAS 491

Query: 405 ------------DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
                       D+A K+ + +G ++  VSWNA++SGF  N+   +A K F  M   G K
Sbjct: 492 TVVDMYCKCGIIDEAQKLHDRIGGQQ-VVSWNAILSGFSLNKESEEAQKFFSEMLDMGLK 550

Query: 453 ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512
            DH T A  L  CA+LA ++LG+QIH   IK   ++D ++ ++L+ MYAKCG + ++ L+
Sbjct: 551 PDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLV 610

Query: 513 FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
           F+  +  D +SWN++I GYA++G   EA+++FE M  E V P+  TF+ VL ACSHVGL 
Sbjct: 611 FEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLF 670

Query: 573 DGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLG 632
           D G + F  MT  Y +EP +EH+ACM+D+L R+    EA + +  M  + +A IW TLL 
Sbjct: 671 DDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLS 730

Query: 633 ACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQ 692
            C++ Q++++  +A   +  L+P  +S Y LLSN++AE+G+W +V + R  ++    +K+
Sbjct: 731 ICKIRQDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKE 790

Query: 693 PGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           PGCSWIEV++++H FL GD    R+ E+   L  L  +++
Sbjct: 791 PGCSWIEVQSEMHGFLVGDKAHPRSGELYEMLNDLIGEMK 830



 Score =  208 bits (529), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 153/554 (27%), Positives = 253/554 (45%), Gaps = 63/554 (11%)

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           F P+ F    ++  Y R      AR +FD +P + DT  WN M+  Y+  G+ + A  L 
Sbjct: 48  FVPNAFVSNCLLQMYARCAGAACARRVFDAMP-RRDTVSWNTMLTAYSHAGDISTAVALF 106

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLD 219
           D MP  ++VSWN+++SGY + G    +   F  M  R    D  ++ ++L     L++L 
Sbjct: 107 DGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELS 166

Query: 220 SAWKF----FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
              +      +   E +V +   ++  Y +   + +A   F  MP RN V+W A IA  V
Sbjct: 167 LGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCV 226

Query: 276 QRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ-- 329
           Q  Q      LFIEM       +  S+ +       ++ L+  R+L         ++   
Sbjct: 227 QNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRV 286

Query: 330 --TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK- 386
             TA++  Y +   + +A + F  +  H V   N M+ G  + G   EA+ LF+ M+   
Sbjct: 287 VGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSS 346

Query: 387 --------------------------------------DIVTWNTMIAGYAQIRQMDDAV 408
                                                 DI   N ++  Y + + + +A 
Sbjct: 347 IRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAY 406

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
            IF+ M K++++VSWNA+I+   QN  + D +  F  M + G K D  T    L ACA L
Sbjct: 407 LIFQGM-KQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAAL 465

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
            +L+ G  +H   IKSG  +D FV ++++ MY KCG I  A+ L        V+SWN+++
Sbjct: 466 RSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAIL 525

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF------ECM 582
           +G+++N  + EA K F EM+  G+ PD  TF  VL  C+++  ++ G ++       E +
Sbjct: 526 SGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEML 585

Query: 583 TEVYAIEPLVEHYA 596
            + Y    LV+ YA
Sbjct: 586 DDEYISSTLVDMYA 599



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/367 (19%), Positives = 155/367 (42%), Gaps = 54/367 (14%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS  F  +  +    K G ++EA K+  ++  +  V++N+++S ++ N    +A+K F +
Sbjct: 484 GSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSE 543

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           M                            D   +PD F++A ++        +E  +++ 
Sbjct: 544 M---------------------------LDMGLKPDHFTFATVLDTCANLATIELGKQIH 576

Query: 132 DLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
             +  +E   D    + +V  YAK G+  ++  + + +  ++ VSWN+M+ GY  +G   
Sbjct: 577 GQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGV 636

Query: 189 LASKFFEAMEERDVV----SWNLMLDGYVELDDLDSAWKFFQKIP-----EQNVVSWVTM 239
            A + FE M++ +VV    ++  +L     +   D   ++F  +      E  +  +  M
Sbjct: 637 EALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACM 696

Query: 240 LSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE----EAARLFIEMPERN 294
           +    R+    EA +  + MP + + V W  +++    R  +E     A+ + +  P+ +
Sbjct: 697 VDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDS 756

Query: 295 PVSWTTMIDGYVRIAK---LDEARRLLDQMPYKN------IAAQTAMISGYVQNKRMDEA 345
            V +  + + Y    K   +   RRLL Q   K       I  Q+ M    V +K    +
Sbjct: 757 SV-YILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMHGFLVGDKAHPRS 815

Query: 346 NQIFDKI 352
            ++++ +
Sbjct: 816 GELYEML 822



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 33/184 (17%)

Query: 482 IKSGYVNDLFVGNSLITM-------------------------------YAKCGRIQNAE 510
           + SG+V + FV N L+ M                               Y+  G I  A 
Sbjct: 44  VVSGFVPNAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAV 103

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
            LF      DV+SWN+L++GY   G   E++ LF EM   GV+PD  TF  +L +CS + 
Sbjct: 104 ALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALE 163

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
            +  G+++     +   +E  V   + ++D+  +   LD+A     GM  + N   WG  
Sbjct: 164 ELSLGVQVHALAVKT-GLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPER-NWVSWGAA 221

Query: 631 LGAC 634
           +  C
Sbjct: 222 IAGC 225


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 230/760 (30%), Positives = 387/760 (50%), Gaps = 67/760 (8%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           +F  M +++TV++N+M++AY+  G ++ A  LF+ MP  ++VSWN++++GY      +E+
Sbjct: 74  VFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQES 133

Query: 97  RELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAG 149
            +LF +M R    PD  ++A+++   +   EL    ++  L        D    +A+V  
Sbjct: 134 VDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDM 193

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSW 205
           Y K  + ++A      MP +N VSW + ++G  +N +     + F  M+   +     S+
Sbjct: 194 YGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSY 253

Query: 206 NLMLDGYVELDDLDSAWKFF-----QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
                    +  L++  +        K     VV    ++  YA+   + +ARR F  +P
Sbjct: 254 ASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVG-TAIVDVYAKANSLTDARRAFFGLP 312

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
              V   NAM+   V+ G   EA  LF  M  R+ + +  +    V  A  +       Q
Sbjct: 313 NHTVETSNAMMVGLVRAGLGIEAMGLFQFMI-RSSIRFDVVSLSGVFSACAETKGYFQGQ 371

Query: 321 MPY---------KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
             +          +I    A++  Y + K + EA  IF  +   D V WN +I    Q G
Sbjct: 372 QVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNG 431

Query: 372 RMDEAINLFRQMV----NKDIVTWNTMIAGYAQIRQM----------------------- 404
             D+ I  F +M+      D  T+ +++   A +R +                       
Sbjct: 432 HYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVAS 491

Query: 405 ------------DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
                       D+A K+ + +G ++  VSWNA++SGF  N+   +A K F  M   G K
Sbjct: 492 TVVDMYCKCGIIDEAQKLHDRIGGQQ-VVSWNAILSGFSLNKESEEAQKFFSEMLDMGLK 550

Query: 453 ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512
            DH T A  L  CA+LA ++LG+QIH   IK   ++D ++ ++L+ MYAKCG + ++ L+
Sbjct: 551 PDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLV 610

Query: 513 FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
           F+  +  D +SWN++I GYA++G   EA+++FE M  E V P+  TF+ VL ACSHVGL 
Sbjct: 611 FEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLF 670

Query: 573 DGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLG 632
           D G + F  MT  Y +EP +EH+ACM+D+L R+    EA + +  M  + +A IW TLL 
Sbjct: 671 DDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLS 730

Query: 633 ACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQ 692
            C++ Q++++  +A   +  L+P  +S Y LLSN++AE+G+W +V + R  ++    +K+
Sbjct: 731 ICKIRQDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKE 790

Query: 693 PGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           PGCSWIEV++++H FL GD    R+ E+   L  L  +++
Sbjct: 791 PGCSWIEVQSEMHGFLVGDKAHPRSGELYEMLNDLIGEMK 830



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 153/554 (27%), Positives = 252/554 (45%), Gaps = 63/554 (11%)

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           F P  F    ++  Y R      AR +FD +P + DT  WN M+  Y+  G+ + A  L 
Sbjct: 48  FVPTAFVSNCLLQMYARCAGAACARRVFDAMP-RRDTVSWNTMLTAYSHAGDISTAVALF 106

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLD 219
           D MP  ++VSWN+++SGY + G    +   F  M  R    D  ++ ++L     L++L 
Sbjct: 107 DGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELS 166

Query: 220 SAWKF----FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
              +      +   E +V +   ++  Y +   + +A   F  MP RN V+W A IA  V
Sbjct: 167 LGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCV 226

Query: 276 QRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ-- 329
           Q  Q      LFIEM       +  S+ +       ++ L+  R+L         ++   
Sbjct: 227 QNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRV 286

Query: 330 --TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK- 386
             TA++  Y +   + +A + F  +  H V   N M+ G  + G   EA+ LF+ M+   
Sbjct: 287 VGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSS 346

Query: 387 --------------------------------------DIVTWNTMIAGYAQIRQMDDAV 408
                                                 DI   N ++  Y + + + +A 
Sbjct: 347 IRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAY 406

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
            IF+ M K++++VSWNA+I+   QN  + D +  F  M + G K D  T    L ACA L
Sbjct: 407 LIFQGM-KQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAAL 465

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
            +L+ G  +H   IKSG  +D FV ++++ MY KCG I  A+ L        V+SWN+++
Sbjct: 466 RSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAIL 525

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF------ECM 582
           +G+++N  + EA K F EM+  G+ PD  TF  VL  C+++  ++ G ++       E +
Sbjct: 526 SGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEML 585

Query: 583 TEVYAIEPLVEHYA 596
            + Y    LV+ YA
Sbjct: 586 DDEYISSTLVDMYA 599



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/367 (19%), Positives = 155/367 (42%), Gaps = 54/367 (14%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS  F  +  +    K G ++EA K+  ++  +  V++N+++S ++ N    +A+K F +
Sbjct: 484 GSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSE 543

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           M                            D   +PD F++A ++        +E  +++ 
Sbjct: 544 M---------------------------LDMGLKPDHFTFATVLDTCANLATIELGKQIH 576

Query: 132 DLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
             +  +E   D    + +V  YAK G+  ++  + + +  ++ VSWN+M+ GY  +G   
Sbjct: 577 GQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGV 636

Query: 189 LASKFFEAMEERDVV----SWNLMLDGYVELDDLDSAWKFFQKIP-----EQNVVSWVTM 239
            A + FE M++ +VV    ++  +L     +   D   ++F  +      E  +  +  M
Sbjct: 637 EALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACM 696

Query: 240 LSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE----EAARLFIEMPERN 294
           +    R+    EA +  + MP + + V W  +++    R  +E     A+ + +  P+ +
Sbjct: 697 VDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDS 756

Query: 295 PVSWTTMIDGYVRIAK---LDEARRLLDQMPYKN------IAAQTAMISGYVQNKRMDEA 345
            V +  + + Y    K   +   RRLL Q   K       I  Q+ M    V +K    +
Sbjct: 757 SV-YILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMHGFLVGDKAHPRS 815

Query: 346 NQIFDKI 352
            ++++ +
Sbjct: 816 GELYEML 822



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 33/184 (17%)

Query: 482 IKSGYVNDLFVGNSLITM-------------------------------YAKCGRIQNAE 510
           + SG+V   FV N L+ M                               Y+  G I  A 
Sbjct: 44  VVSGFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAV 103

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
            LF      DV+SWN+L++GY   G   E++ LF EM   GV+PD  TF  +L +CS + 
Sbjct: 104 ALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALE 163

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
            +  G+++     +   +E  V   + ++D+  +   LD+A     GM  + N   WG  
Sbjct: 164 ELSLGVQVHALAVKT-GLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPER-NWVSWGAA 221

Query: 631 LGAC 634
           +  C
Sbjct: 222 IAGC 225


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 230/760 (30%), Positives = 387/760 (50%), Gaps = 67/760 (8%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           +F  M +++TV++N+M++AY+  G ++ A  LF+ MP  ++VSWN++++GY      +E+
Sbjct: 116 VFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQES 175

Query: 97  RELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAG 149
            +LF +M R    PD  ++A+++   +   EL    ++  L        D    +A+V  
Sbjct: 176 VDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDM 235

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSW 205
           Y K  + ++A      MP +N VSW + ++G  +N +     + F  M+   +     S+
Sbjct: 236 YGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSY 295

Query: 206 NLMLDGYVELDDLDSAWKFF-----QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
                    +  L++  +        K     VV    ++  YA+   + +ARR F  +P
Sbjct: 296 ASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVG-TAIVDVYAKANSLTDARRAFFGLP 354

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
              V   NAM+   V+ G   EA  LF  M  R+ + +  +    V  A  +       Q
Sbjct: 355 NHTVETSNAMMVGLVRAGLGIEAMGLFQFMI-RSSIRFDVVSLSGVFSACAETKGYFQGQ 413

Query: 321 MPY---------KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
             +          +I    A++  Y + K + EA  IF  +   D V WN +I    Q G
Sbjct: 414 QVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNG 473

Query: 372 RMDEAINLFRQMV----NKDIVTWNTMIAGYAQIRQM----------------------- 404
             D+ I  F +M+      D  T+ +++   A +R +                       
Sbjct: 474 HYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVAS 533

Query: 405 ------------DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
                       D+A K+ + +G ++  VSWNA++SGF  N+   +A K F  M   G K
Sbjct: 534 TVVDMYCKCGIIDEAQKLHDRIGGQQ-VVSWNAILSGFSLNKESEEAQKFFSEMLDMGLK 592

Query: 453 ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512
            DH T A  L  CA+LA ++LG+QIH   IK   ++D ++ ++L+ MYAKCG + ++ L+
Sbjct: 593 PDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLV 652

Query: 513 FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
           F+  +  D +SWN++I GYA++G   EA+++FE M  E V P+  TF+ VL ACSHVGL 
Sbjct: 653 FEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLF 712

Query: 573 DGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLG 632
           D G + F  MT  Y +EP +EH+ACM+D+L R+    EA + +  M  + +A IW TLL 
Sbjct: 713 DDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLS 772

Query: 633 ACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQ 692
            C++ Q++++  +A   +  L+P  +S Y LLSN++AE+G+W +V + R  ++    +K+
Sbjct: 773 ICKIRQDVEIAELAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKE 832

Query: 693 PGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           PGCSWIEV++++H FL GD    R+ E+   L  L  +++
Sbjct: 833 PGCSWIEVQSEMHGFLVGDKAHPRSGELYEMLNDLIGEMK 872



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 153/554 (27%), Positives = 252/554 (45%), Gaps = 63/554 (11%)

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           F P  F    ++  Y R      AR +FD +P + DT  WN M+  Y+  G+ + A  L 
Sbjct: 90  FVPTAFVSNCLLQMYARCAGAACARRVFDAMP-RRDTVSWNTMLTAYSHAGDISTAVALF 148

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLD 219
           D MP  ++VSWN+++SGY + G    +   F  M  R    D  ++ ++L     L++L 
Sbjct: 149 DGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELS 208

Query: 220 SAWKF----FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
              +      +   E +V +   ++  Y +   + +A   F  MP RN V+W A IA  V
Sbjct: 209 LGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCV 268

Query: 276 QRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ-- 329
           Q  Q      LFIEM       +  S+ +       ++ L+  R+L         ++   
Sbjct: 269 QNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRV 328

Query: 330 --TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK- 386
             TA++  Y +   + +A + F  +  H V   N M+ G  + G   EA+ LF+ M+   
Sbjct: 329 VGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSS 388

Query: 387 --------------------------------------DIVTWNTMIAGYAQIRQMDDAV 408
                                                 DI   N ++  Y + + + +A 
Sbjct: 389 IRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAY 448

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
            IF+ M K++++VSWNA+I+   QN  + D +  F  M + G K D  T    L ACA L
Sbjct: 449 LIFQGM-KQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAAL 507

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
            +L+ G  +H   IKSG  +D FV ++++ MY KCG I  A+ L        V+SWN+++
Sbjct: 508 RSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAIL 567

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF------ECM 582
           +G+++N  + EA K F EM+  G+ PD  TF  VL  C+++  ++ G ++       E +
Sbjct: 568 SGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEML 627

Query: 583 TEVYAIEPLVEHYA 596
            + Y    LV+ YA
Sbjct: 628 DDEYISSTLVDMYA 641



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 73/367 (19%), Positives = 155/367 (42%), Gaps = 54/367 (14%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS  F  +  +    K G ++EA K+  ++  +  V++N+++S ++ N    +A+K F +
Sbjct: 526 GSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSE 585

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           M                            D   +PD F++A ++        +E  +++ 
Sbjct: 586 M---------------------------LDMGLKPDHFTFATVLDTCANLATIELGKQIH 618

Query: 132 DLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
             +  +E   D    + +V  YAK G+  ++  + + +  ++ VSWN+M+ GY  +G   
Sbjct: 619 GQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGV 678

Query: 189 LASKFFEAMEERDVV----SWNLMLDGYVELDDLDSAWKFFQKIP-----EQNVVSWVTM 239
            A + FE M++ +VV    ++  +L     +   D   ++F  +      E  +  +  M
Sbjct: 679 EALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACM 738

Query: 240 LSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE----EAARLFIEMPERN 294
           +    R+    EA +  + MP + + V W  +++    R  +E     A+ + +  P+ +
Sbjct: 739 VDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDS 798

Query: 295 PVSWTTMIDGYVRIAK---LDEARRLLDQMPYKN------IAAQTAMISGYVQNKRMDEA 345
            V +  + + Y    K   +   RRLL Q   K       I  Q+ M    V +K    +
Sbjct: 799 SV-YILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMHGFLVGDKAHPRS 857

Query: 346 NQIFDKI 352
            ++++ +
Sbjct: 858 GELYEML 864



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 33/184 (17%)

Query: 482 IKSGYVNDLFVGNSLITM-------------------------------YAKCGRIQNAE 510
           + SG+V   FV N L+ M                               Y+  G I  A 
Sbjct: 86  VVSGFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAV 145

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
            LF      DV+SWN+L++GY   G   E++ LF EM   GV+PD  TF  +L +CS + 
Sbjct: 146 ALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALE 205

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
            +  G+++     +   +E  V   + ++D+  +   LD+A     GM  + N   WG  
Sbjct: 206 ELSLGVQVHALAVKT-GLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPER-NWVSWGAA 263

Query: 631 LGAC 634
           +  C
Sbjct: 264 IAGC 267


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 220/640 (34%), Positives = 350/640 (54%), Gaps = 52/640 (8%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N ++  YAK G+   A  + D MP K+  SWN+++SGY K G   ++ +    M + D V
Sbjct: 49  NNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPV 108

Query: 204 SWNLMLDGYVELDDLDSA-WKFFQKI-----PEQNVVSWV-------------------- 237
           SW  ++ GY +    D+A W F + I     P Q  VS V                    
Sbjct: 109 SWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFV 168

Query: 238 -------------TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA 284
                        ++L+ YA+ G  + A+ +FD+M ++N+  WNA+I+ Y+Q GQ E AA
Sbjct: 169 VKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAA 228

Query: 285 RLFIEMPERNPVSWTTMIDGYVRIAKLDEA----RRLLDQMPYKNIAAQTAMISGYVQN- 339
             F +MP+R+ VSW +MI GY +     EA     ++L++   K      A I     N 
Sbjct: 229 SQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANL 288

Query: 340 KRMDEANQIFDKIGTHDV----VCWNVMIKGYAQCGRMDEA--INLFRQMVNKDIVTWNT 393
           ++++   QI   I   +        N +I  YA+ G ++ A  I    +  N +I+ + +
Sbjct: 289 EKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTS 348

Query: 394 MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA 453
           ++ GY ++  +  A +IF ++ + R+ V+W A+I G++QN    DAL++F LM  EG + 
Sbjct: 349 LLDGYTKLGNVKPAREIFNKL-RDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEP 407

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
           +  TLA  LS  + L  L+ G+QIH  AIK+G  +   V N+LI MYAK G I  A+ +F
Sbjct: 408 NSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVF 467

Query: 514 KDAD-PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
              +   +++SW S+I   A +G   EAI LFE M+  G+ PD +T++GVLSAC+HVGLV
Sbjct: 468 DLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLV 527

Query: 573 DGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLG 632
           + G K +  MTEV+ IEP + HYACMIDL  RAG L EA+  ++ M I+P+   WG+LL 
Sbjct: 528 EQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLLA 587

Query: 633 ACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQ 692
           +C++H+N  L ++A E+L  ++P  +  Y  L+N+++  G+W+   + R  M+  G +K+
Sbjct: 588 SCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRKE 647

Query: 693 PGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            G SWI +KN++H F   D    +  EI   +  +  +I+
Sbjct: 648 KGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIK 687



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 157/585 (26%), Positives = 290/585 (49%), Gaps = 36/585 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V+  N  +T   K+G +  A  +F +M  K+T ++N++IS YAK G    +R+L  +MP 
Sbjct: 45  VYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPD 104

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAREL 130
            + VSW ++I GY        A  +F KM      P  F+ + +++       L+  R++
Sbjct: 105 CDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKI 164

Query: 131 FDLLPNKEDTAC---WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
              +      +C     +++  YAK G+   AK + D M  KNI +WN+++S Y ++G+ 
Sbjct: 165 HSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQF 224

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELD-DLDSAWKFFQKIPEQNV----VSWVTMLSG 242
            LA+  FE M +RD+VSWN M+ GY +   +L++   F + + E ++     +  ++LS 
Sbjct: 225 ELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSA 284

Query: 243 YA-----RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIE---MPERN 294
            A       G+ + A  L  +      V  NA+I+ Y + G + E ARL +E       N
Sbjct: 285 CANLEKLNIGKQIHAYILRAETETSGAVG-NALISMYAKSGGV-EIARLIVEHNRTSNLN 342

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF----D 350
            +++T+++DGY ++  +  AR + +++  +++ A TAMI GYVQN   ++A ++F    +
Sbjct: 343 IIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVN 402

Query: 351 KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV----NKDIVTWNTMIAGYAQIRQMDD 406
           +    +      M+   +    ++    +    +    +      N +IA YA+   ++ 
Sbjct: 403 EGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINV 462

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
           A ++F+    ++  VSW ++I    Q+    +A+ +F  M   G K DH T    LSAC 
Sbjct: 463 AKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACT 522

Query: 467 HLAALQLGRQIHHLAIKSGYVNDLFVGNS-LITMYAKCGRIQNAELLFKDADPV--DVIS 523
           H+  ++ GR+ +++  +   +       + +I +Y + G +Q A  LF ++ P+  D I+
Sbjct: 523 HVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEA-YLFIESMPIEPDNIA 581

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVM--EGVAPDPVTFIGVLSAC 566
           W SL+A   I+ NA  A    E +++   G +   +    V SAC
Sbjct: 582 WGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSAC 626



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 124/439 (28%), Positives = 207/439 (47%), Gaps = 46/439 (10%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS V      +    K G    A  +F +M+ KN  T+N++IS Y ++G+   A   FE+
Sbjct: 174 GSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEK 233

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEK 126
           MP R++VSWNSMI+GY       EA  +F KM      +PD F+ A +++      +L  
Sbjct: 234 MPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNI 293

Query: 127 ARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDA--MPSKNIVSWNSMLSGY 181
            +++   +   E     A  NA+++ YAK G    A+ +++     + NI+++ S+L GY
Sbjct: 294 GKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGY 353

Query: 182 TKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWV 237
           TK G +  A + F  + +RDVV+W  M+ GYV+    + A + F+ +    PE N  +  
Sbjct: 354 TKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLA 413

Query: 238 TMLSGYARNGRMLEARRLFDQMPIR-----NVVAWNAMIAAYVQRGQIEEAARLFIEMP- 291
            MLS  + +  +LE  +      I+          NA+IA Y + G I  A R+F ++P 
Sbjct: 414 AMLS-VSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVF-DLPN 471

Query: 292 -ERNPVSWTTMIDGYVRIAKLDEARRLL----------DQMPYKNIAAQTAMISGYVQNK 340
            ++  VSWT+MI    +     EA  L           D + Y  + +    + G V+  
Sbjct: 472 GKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHV-GLVEQG 530

Query: 341 R-----MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTM 394
           R     M E ++I +   +H    +  MI  Y + G + EA      M +  D + W ++
Sbjct: 531 RKYYNMMTEVHEI-EPTLSH----YACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSL 585

Query: 395 IAGYAQIRQMDDAVKIFEE 413
           +A   +I +  D  K+  E
Sbjct: 586 LAS-CKIHKNADLAKVAAE 603



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 8/111 (7%)

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           GR +H   IK G    +++ N+L+T YAK G ++ A  +F +       SWN+LI+GYA 
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 534 NGNATEAIKLFEEMVMEGVAP--DPVTFIGVLSACSHVGLVDGGLKLFECM 582
            GN   + +L  EM      P  DPV++  ++   +  GL D  + +F  M
Sbjct: 89  QGNFEVSRRLLYEM------PDCDPVSWTAIIVGYNQFGLFDNAIWMFAKM 133


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 219/642 (34%), Positives = 350/642 (54%), Gaps = 56/642 (8%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N ++  YAK G+   A  + D MP K+  SWN+++SGY K G   ++ +    M + D V
Sbjct: 49  NNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPV 108

Query: 204 SWNLMLDGYVELDDLDSA-WKFFQKI-----PEQNVVSWV-------------------- 237
           SW  ++ GY +    D+A W F + I     P Q  VS V                    
Sbjct: 109 SWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFV 168

Query: 238 -------------TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA 284
                        ++L+ YA+ G  + A+ +FD+M ++N+  WNA+I+ Y+Q GQ E AA
Sbjct: 169 VKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAA 228

Query: 285 RLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM-------PYKNIAAQTAMISGYV 337
             F +MP+R+ VSW +MI GY +     EA  +  +M       P     A  +++S   
Sbjct: 229 SQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLA--SILSACA 286

Query: 338 QNKRMDEANQIFDKIGTHDV----VCWNVMIKGYAQCGRMDEA--INLFRQMVNKDIVTW 391
             ++++   QI   I   +        N +I  YA+ G ++ A  I    +  N +I+ +
Sbjct: 287 NLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAF 346

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
            +++ GY ++  +  A +IF ++ + R+ V+W A+I G++QN    DAL++F LM  EG 
Sbjct: 347 TSLLDGYTKLGNVKPAREIFNKL-RDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGP 405

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL 511
           + +  TLA  LS  + L  L+ G+QIH  AIK+G  +   V N+LI MYAK G I  A+ 
Sbjct: 406 EPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKR 465

Query: 512 LFKDAD-PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
           +F   +   +++SW S+I   A +G   EAI LFE M+  G+ PD +T++GVLSAC+HVG
Sbjct: 466 VFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVG 525

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
           LV+ G K +  MTEV+ IEP + HYACMIDL  RAG L EA+  ++ M I+P+   WG+L
Sbjct: 526 LVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSL 585

Query: 631 LGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQ 690
           L +C++H+N  L ++A E+L  ++P  +  Y  L+N+++  G+W+   + R  M+  G +
Sbjct: 586 LASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVR 645

Query: 691 KQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           K+ G SWI +KN++H F   D    +  EI   +  +  +I+
Sbjct: 646 KEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIK 687



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 157/585 (26%), Positives = 286/585 (48%), Gaps = 36/585 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V+  N  +T   K+G +  A  +F +M  K+T ++N++IS YAK G    +R+L  +MP 
Sbjct: 45  VYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPD 104

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAREL 130
            + VSW ++I GY        A  +F KM      P  F+ + +++       L+  R++
Sbjct: 105 CDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKI 164

Query: 131 FDLLPNKEDTAC---WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
              +      +C     +++  YAK G+   AK + D M  KNI +WN+++S Y ++G+ 
Sbjct: 165 HSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQF 224

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV-----SWVTMLSG 242
            LA+  FE M +RD+VSWN M+ GY +      A   F K+  +  +     +  ++LS 
Sbjct: 225 ELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSA 284

Query: 243 YA-----RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIE---MPERN 294
            A       G+ + A  L  +      V  NA+I+ Y + G + E ARL +E       N
Sbjct: 285 CANLEKLNIGKQIHAYILRAETETSGAVG-NALISMYAKSGGV-EIARLIVEHNRTSNLN 342

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF----D 350
            +++T+++DGY ++  +  AR + +++  +++ A TAMI GYVQN   ++A ++F    +
Sbjct: 343 IIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVN 402

Query: 351 KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV----NKDIVTWNTMIAGYAQIRQMDD 406
           +    +      M+   +    ++    +    +    +      N +IA YA+   ++ 
Sbjct: 403 EGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINV 462

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
           A ++F+    ++  VSW ++I    Q+    +A+ +F  M   G K DH T    LSAC 
Sbjct: 463 AKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACT 522

Query: 467 HLAALQLGRQIHHLAIKSGYVNDLFVGNS-LITMYAKCGRIQNAELLFKDADPV--DVIS 523
           H+  ++ GR+ +++  +   +       + +I +Y + G +Q A  LF ++ P+  D I+
Sbjct: 523 HVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEA-YLFIESMPIEPDNIA 581

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVM--EGVAPDPVTFIGVLSAC 566
           W SL+A   I+ NA  A    E +++   G +   +    V SAC
Sbjct: 582 WGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSAC 626



 Score =  142 bits (359), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 124/439 (28%), Positives = 207/439 (47%), Gaps = 46/439 (10%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS V      +    K G    A  +F +M+ KN  T+N++IS Y ++G+   A   FE+
Sbjct: 174 GSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEK 233

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEK 126
           MP R++VSWNSMI+GY       EA  +F KM      +PD F+ A +++      +L  
Sbjct: 234 MPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNI 293

Query: 127 ARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDA--MPSKNIVSWNSMLSGY 181
            +++   +   E     A  NA+++ YAK G    A+ +++     + NI+++ S+L GY
Sbjct: 294 GKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGY 353

Query: 182 TKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWV 237
           TK G +  A + F  + +RDVV+W  M+ GYV+    + A + F+ +    PE N  +  
Sbjct: 354 TKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLA 413

Query: 238 TMLSGYARNGRMLEARRLFDQMPIR-----NVVAWNAMIAAYVQRGQIEEAARLFIEMP- 291
            MLS  + +  +LE  +      I+          NA+IA Y + G I  A R+F ++P 
Sbjct: 414 AMLS-VSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVF-DLPN 471

Query: 292 -ERNPVSWTTMIDGYVRIAKLDEARRLL----------DQMPYKNIAAQTAMISGYVQNK 340
            ++  VSWT+MI    +     EA  L           D + Y  + +    + G V+  
Sbjct: 472 GKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHV-GLVEQG 530

Query: 341 R-----MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTM 394
           R     M E ++I +   +H    +  MI  Y + G + EA      M +  D + W ++
Sbjct: 531 RKYYNMMTEVHEI-EPTLSH----YACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSL 585

Query: 395 IAGYAQIRQMDDAVKIFEE 413
           +A   +I +  D  K+  E
Sbjct: 586 LAS-CKIHKNADLAKVAAE 603



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 8/111 (7%)

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           GR +H   IK G    +++ N+L+T YAK G ++ A  +F +       SWN+LI+GYA 
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 534 NGNATEAIKLFEEMVMEGVAP--DPVTFIGVLSACSHVGLVDGGLKLFECM 582
            GN   + +L  EM      P  DPV++  ++   +  GL D  + +F  M
Sbjct: 89  QGNFEVSRRLLYEM------PDCDPVSWTAIIVGYNQFGLFDNAIWMFAKM 133


>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 861

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 232/779 (29%), Positives = 403/779 (51%), Gaps = 85/779 (10%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           +F +M  ++ V++N MI+ YAK+  +  A   F  MP R++VSWNSM++GYL N +  ++
Sbjct: 63  VFDRMPLRDVVSWNKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKS 122

Query: 97  RELFDKMFRP----DLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAG 149
            E+F  M R     D  ++A+++   +   +     ++  ++       D    +A++  
Sbjct: 123 IEVFVDMGRAGTEFDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDM 182

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV-VSWNL- 207
           YAK   + E+ ++   +P KN VSW+++++G  +N  + LA KFF+ M++ +  VS ++ 
Sbjct: 183 YAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIY 242

Query: 208 --MLDGYVELDDLD-----SAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
             +L     L +L       A           +V   T L  YA+   M +A+ LFD+  
Sbjct: 243 ASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTAT-LDMYAKCDNMQDAQILFDKSE 301

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARR 316
             N  ++NAMI  Y Q     +A  LF  +       + +S + +      +  L E  +
Sbjct: 302 NLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQ 361

Query: 317 LLDQMPYK-----NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
           + D +  K     ++    A I  Y + + + EA ++FD++   D V WN +I  + Q G
Sbjct: 362 IYD-LAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNG 420

Query: 372 RMDEAINLF----RQMVNKDIVTWNTMIAG------------------------------ 397
           +  E + LF    R  +  D  T+ +++                                
Sbjct: 421 KGYETLFLFVSMLRSRIEPDEFTFGSVLKACTGGSLGYGMEIHSSIVKSGMASNSSVGCS 480

Query: 398 ----YAQIRQMDDAVKIFEEMGKRRNT-------------------VSWNALISGFLQNE 434
               Y++   +++A KI     +R N                    VSWN++ISG++  E
Sbjct: 481 LIDMYSKCGMIEEAEKIHSRFFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKE 540

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN 494
              DA  +F  M + G   D  T A  L  CA+LA+  LG+QIH   IK    +D+++ +
Sbjct: 541 QSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYISS 600

Query: 495 SLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP 554
           +L+ MY+KCG + ++ L+F+ +   D ++WN++I GYA +G   EAI+LFE M++E + P
Sbjct: 601 TLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKP 660

Query: 555 DPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEM 614
           + VTFI +L AC+H+GL+D GL+ F  M   Y ++P + HY+ M+D+L ++G++  A E+
Sbjct: 661 NHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALEL 720

Query: 615 VKGMKIKPNAGIWGTLLGACRMHQ-NIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGR 673
           ++ M  + +  IW TLLG C +H+ N+++   A   L  L+PQ +S Y LLSN++A+AG 
Sbjct: 721 IREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGM 780

Query: 674 WDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           W++V  +R +M G   +K+PGCSW+E+K+++H FL GD    R  EI   L  + ++++
Sbjct: 781 WEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEELGLIYSEMK 839



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 180/642 (28%), Positives = 290/642 (45%), Gaps = 117/642 (18%)

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           FRP  F    ++  YT   +   A  +FD +P + D   WN M+ GYAK  N  +A    
Sbjct: 37  FRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLR-DVVSWNKMINGYAKSNNMVKASFFF 95

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFF----EAMEERDVVSWNLMLDGYVELDDLD 219
           + MP +++VSWNSMLSGY +NGE   + + F     A  E D  ++ ++L     L+D  
Sbjct: 96  NMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTEFDGRTFAIILKVCSCLEDTS 155

Query: 220 SAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
              +    +     + +VV+   +L  YA+  R +E+ R+F  +P +N V+W+A+IA  V
Sbjct: 156 LGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCV 215

Query: 276 QRGQIEEAARLFIEMPERNP-VSWTTM-----------------------------IDGY 305
           Q   +  A + F EM + N  VS +                                DG 
Sbjct: 216 QNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGI 275

Query: 306 VRIAKLD---------EARRLLDQMPYKNIAAQTAMISGYVQNK----------RMDEAN 346
           VR A LD         +A+ L D+    N  +  AMI+GY Q +          R+  + 
Sbjct: 276 VRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSG 335

Query: 347 QIFDKIGTHDVVCWNVMIKGYAQCGRM-DEAINLFRQMVNKDIVTWNTMIAGYAQIRQMD 405
             FD+I    V     ++KG ++  ++ D AI   +  ++ D+   N  I  Y + + + 
Sbjct: 336 LGFDEISLSGVFRACALVKGLSEGLQIYDLAI---KSSLSLDVCVANAAIDMYGKCQALA 392

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
           +A ++F+EM +RR+ VSWNA+I+   QN    + L +FV M +   + D  T    L AC
Sbjct: 393 EAFRVFDEM-RRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKAC 451

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL----FKDADPVDV 521
               +L  G +IH   +KSG  ++  VG SLI MY+KCG I+ AE +    F+  +    
Sbjct: 452 TG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRTNVSGT 510

Query: 522 ----------------ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565
                           +SWNS+I+GY +   + +A  LF  M+  G+ PD  T+  VL  
Sbjct: 511 MEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDT 570

Query: 566 CSHVGLVDGGLKLF------ECMTEVYAIEPLVEHYA----------------------- 596
           C+++     G ++       E  ++VY    LV+ Y+                       
Sbjct: 571 CANLASAGLGKQIHAQVIKKELQSDVYISSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTW 630

Query: 597 -CMIDLLSRAGRLDEAFEMVKGM---KIKPNAGIWGTLLGAC 634
             MI   +  G+ +EA ++ + M    IKPN   + ++L AC
Sbjct: 631 NAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRAC 672



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 125/601 (20%), Positives = 249/601 (41%), Gaps = 123/601 (20%)

Query: 26  GKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIA 85
            K  R  E++++F  + +KN+V+++++I+   +N  ++ A K F++M + N     S+ A
Sbjct: 184 AKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYA 243

Query: 86  GYLHN----DKVKEARELFDKMFRPDLFSWALMITC----YTRKGELEKARELFDLLPNK 137
             L +     +++   +L     + D  +  ++ T     Y +   ++ A+ LFD   N 
Sbjct: 244 SVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENL 303

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK--------NGEMHL 189
              + +NAM+ GY++  +  +A  L   + S  +      LSG  +        +  + +
Sbjct: 304 NRQS-YNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQI 362

Query: 190 ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRM 249
                ++    DV   N  +D Y +   L  A++ F ++  ++ VSW  +++ + +NG+ 
Sbjct: 363 YDLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKG 422

Query: 250 LEARRLFDQM------P---------------------------IRNVVAWN-----AMI 271
            E   LF  M      P                           +++ +A N     ++I
Sbjct: 423 YETLFLFVSMLRSRIEPDEFTFGSVLKACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLI 482

Query: 272 AAYVQRGQIEEAARLFIEMPERNP--------------------VSWTTMIDGYVRIAKL 311
             Y + G IEEA ++     +R                      VSW ++I GYV   + 
Sbjct: 483 DMYSKCGMIEEAEKIHSRFFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQS 542

Query: 312 DEARRLL----------DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWN 361
           ++A+ L           D+  Y  +    A ++     K++    Q+  K    DV   +
Sbjct: 543 EDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHA--QVIKKELQSDVYISS 600

Query: 362 VMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
            ++  Y++CG + ++  +F + + +D VTWN MI GYA   + ++A+++FE         
Sbjct: 601 TLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFER-------- 652

Query: 422 SWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLA 481
                                   M  E  K +H T    L ACAH+  +  G +  ++ 
Sbjct: 653 ------------------------MILENIKPNHVTFISILRACAHMGLIDKGLEYFYM- 687

Query: 482 IKSGYVND--LFVGNSLITMYAKCGRIQNA-ELLFKDADPVDVISWNSLIAGYAINGNAT 538
           +K  Y  D  L   ++++ +  K G+++ A EL+ +     D + W +L+    I+ N  
Sbjct: 688 MKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNV 747

Query: 539 E 539
           E
Sbjct: 748 E 748



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 83/399 (20%), Positives = 172/399 (43%), Gaps = 60/399 (15%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  I   GK   + EA ++F +M +++ V++N++I+A+ +NG+  +   LF  M +  + 
Sbjct: 379 NAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIE 438

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFS----WALMITCYTRKGELEKAREL 130
               ++ S++        +    E+   + +  + S       +I  Y++ G +E+A ++
Sbjct: 439 PDEFTFGSVLKA-CTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKI 497

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
                 + + +            G   E +K+ +    +  VSWNS++SGY    +   A
Sbjct: 498 HSRFFQRTNVS------------GTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDA 545

Query: 191 SKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSG 242
              F  M E     D  ++  +LD    L       +   ++ ++ + S V    T++  
Sbjct: 546 QMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYISSTLVDM 605

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF----IEMPERNPVSW 298
           Y++ G + ++R +F++   R+ V WNAMI  Y   G+ EEA +LF    +E  + N V++
Sbjct: 606 YSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTF 665

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV 358
            +++     +  +D           K +     M   Y  + ++   + + D +G     
Sbjct: 666 ISILRACAHMGLID-----------KGLEYFYMMKRDYGLDPQLPHYSNMVDILG----- 709

Query: 359 CWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIA 396
                     + G++  A+ L R+M    D V W T++ 
Sbjct: 710 ----------KSGKVKRALELIREMPFEADDVIWRTLLG 738



 Score = 66.2 bits (160), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 85/201 (42%), Gaps = 33/201 (16%)

Query: 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
           CA   AL+LG+Q H   I SG+    FV N L+ +Y       +A ++F      DV+SW
Sbjct: 16  CAKQGALELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSW 75

Query: 525 NSLIAGYAI-------------------------------NGNATEAIKLFEEMVMEGVA 553
           N +I GYA                                NG   ++I++F +M   G  
Sbjct: 76  NKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTE 135

Query: 554 PDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFE 613
            D  TF  +L  CS +     G+++   +  V     +V   A ++D+ ++  R  E+  
Sbjct: 136 FDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASA-LLDMYAKGKRFVESLR 194

Query: 614 MVKGMKIKPNAGIWGTLLGAC 634
           + +G+  K N+  W  ++  C
Sbjct: 195 VFQGIPEK-NSVSWSAIIAGC 214



 Score = 55.8 bits (133), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 73/145 (50%), Gaps = 9/145 (6%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V+  +  +    K G + ++  +F +  +++ VT+N+MI  YA +G+  +A +LFE+M
Sbjct: 594 SDVYISSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERM 653

Query: 73  PQRNL----VSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGE 123
              N+    V++ S++    H   + +  E F  M R     P L  ++ M+    + G+
Sbjct: 654 ILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGK 713

Query: 124 LEKARELFDLLPNKEDTACWNAMVA 148
           +++A EL   +P + D   W  ++ 
Sbjct: 714 VKRALELIREMPFEADDVIWRTLLG 738


>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Brachypodium distachyon]
          Length = 805

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 228/745 (30%), Positives = 378/745 (50%), Gaps = 40/745 (5%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G+  F  N+ +     SG   +A++ F  + + N  +YN+ +SA  + G ++ AR L ++
Sbjct: 40  GADTFLINRLVELYSVSGLPCDALRAFRSLPRPNAYSYNAALSAARRAGDLDAARALLDE 99

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKA 127
           MP RN+VSWN++IA    +++  EA EL++ M R    P  F+ A +++       L+  
Sbjct: 100 MPDRNVVSWNTVIAALARSERAGEALELYEGMLREGLVPTHFTLASVLSACGAVAALDDG 159

Query: 128 RELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
           R    L       E+    NA++  Y K G   +A +L D M S N VS+ +M+ G  + 
Sbjct: 160 RRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAMMGGLVQA 219

Query: 185 GEMHLASKFFEAMEER----DVVSWNLMLDGYVELD----DLDSAWKFFQKI-------- 228
           G +  A + F  M       D V+ + +L    +      D+  A++  Q I        
Sbjct: 220 GSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRLGQCIHALIVRKG 279

Query: 229 --PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
              +Q+V +  +++  Y +  +M EA ++FD +P  + V+WN +I  + Q G   +A  +
Sbjct: 280 FGSDQHVGN--SLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQAGSYAKALEV 337

Query: 287 FIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRM 342
              M E     N V+++ M+   ++   +  AR + D++   ++     ++SGY Q +  
Sbjct: 338 LNLMEESGSEPNEVTYSNMLASCIKARDVLSARAMFDKISRPSVTTWNTLLSGYCQEELH 397

Query: 343 DEANQIFDKIGTHDV----VCWNVMIKGYAQCGRMDEAINL----FRQMVNKDIVTWNTM 394
            +  ++F ++   +V        V++   ++ G +D    +     R +++ D+   + +
Sbjct: 398 QDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQVHSASVRFLLHNDMFVASGL 457

Query: 395 IAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
           +  Y++  Q+  A  IF  M   R+ V WN++ISG   +  + +A   F  M   G    
Sbjct: 458 VDMYSKCGQIGIARIIFNRM-TERDVVCWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPT 516

Query: 455 HSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
            S+ A  +++CA L+++  GRQIH   +K GY  +++VG++LI MYAKCG + +A + F 
Sbjct: 517 ESSYASMINSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFD 576

Query: 515 DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574
                ++++WN +I GYA NG   +A+ LFE M+     PD VTFI VL+ CSH GLVD 
Sbjct: 577 CMVTKNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCSHSGLVDE 636

Query: 575 GLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGAC 634
            +  F  M   Y I PL EHY C+ID L RAGRL E   ++  M  K +  +W  LL AC
Sbjct: 637 AIAFFNSMESTYGITPLAEHYTCLIDGLGRAGRLVEVEALIDNMPCKDDPIVWEVLLAAC 696

Query: 635 RMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPG 694
            +H N +LG  A + L  L+P+  S Y LLSN++A  GR  +   VR  M   G  K  G
Sbjct: 697 AVHHNAELGECAAKHLFRLDPKNPSPYVLLSNIYASLGRHGDASGVRALMSSRGVVKGRG 756

Query: 695 CSWIEVKNQIHTFLSGDPKQCRTAE 719
            SWI+ K+ +H F+  D  Q    E
Sbjct: 757 YSWIDHKDGVHAFMVADDLQTDGGE 781


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 235/768 (30%), Positives = 393/768 (51%), Gaps = 82/768 (10%)

Query: 45   NTVTYNSMISAYAK-NGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
            + +  N ++S Y+  +G ++DA ++F+++  RN V+WNS+I+ Y        A +LF  M
Sbjct: 277  DMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVM 336

Query: 104  --------FRPDLFSWALMITCYTRKGE-----LEKARELFDLLPNKEDTACWNAMVAGY 150
                     RP+ ++   ++T      +     LE+     +      D    +A+V G+
Sbjct: 337  QMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGF 396

Query: 151  AKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN---- 206
            A+ G  + AK +   M  +N V+ N ++ G  +  +   A+K F+ M  +D+V  N    
Sbjct: 397  ARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEM--KDLVEINSESL 454

Query: 207  -LMLDGYVELDDLDS---------AWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF 256
             ++L  + E  +L           A+ F   + +  +     +++ Y +   +  A  +F
Sbjct: 455  VVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVF 514

Query: 257  DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV----SWTTMIDGYVRIAKLD 312
              MP ++ V+WN+MI+      + EEA   F  M     V    S  + +     +  L 
Sbjct: 515  QLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLT 574

Query: 313  EARRLLDQMPYK-----NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367
              R++  +  +K     +++   A+++ Y +   ++E  ++F ++  +D V WN  I   
Sbjct: 575  LGRQIHGE-GFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGAL 633

Query: 368  AQC-GRMDEAINLFRQM---------------------------------------VNKD 387
            A+    + +A+  F +M                                       V  D
Sbjct: 634  AKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADD 693

Query: 388  IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMT 447
                N ++A Y +  QM+D   IF  M +RR+ VSWN++ISG+L +     A+ +   M 
Sbjct: 694  NAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMM 753

Query: 448  QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
            Q G+K D  T A  LSACA +A L+ G ++H  A+++   +D+ VG++L+ MYAKCG+I 
Sbjct: 754  QRGQKLDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKID 813

Query: 508  NAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
             A   F+     ++ SWNS+I+GYA +G+  +A+K+F  M   G +PD VTF+GVLSACS
Sbjct: 814  YASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACS 873

Query: 568  HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIW 627
            HVGLVD G K F+ M EVY + P +EH++CM+DLL RAG + +  + +K M + PN  IW
Sbjct: 874  HVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIW 933

Query: 628  GTLLGA-CRMH-QNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685
             T+LGA CR + +N +LG+ A + L ELEPQ    Y LLSNMHA  G W++V + R++M 
Sbjct: 934  RTVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEARLAMR 993

Query: 686  GSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
             +  +K  GCSW+ +K+ +H F++GD       +I   LK L  +IR+
Sbjct: 994  KAAVKKDAGCSWVNMKDGVHLFVAGDQTHPEKEKIYEKLKELMNKIRD 1041



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 170/692 (24%), Positives = 310/692 (44%), Gaps = 95/692 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  N  I    + G +  A K+F +M QKN V+++ +IS Y +N   ++A  LF+ +  
Sbjct: 175 VFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVIS 234

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
             L+  +  +   L     ++      K+         + I  +  K            L
Sbjct: 235 SGLLPNHFAVGSALR--ACQQCGSTGIKL--------GMQIHAFICK------------L 272

Query: 135 PNKEDTACWNAMVAGYAKI-GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
           P   D    N +++ Y+   G+ ++A ++ D +  +N V+WNS++S Y + G+   A K 
Sbjct: 273 PCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKL 332

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAW-----------KFFQKIPE----QNVVSWVT 238
           F  M + + V  NL  + Y     + +A            +   +I +    +++     
Sbjct: 333 FSVM-QMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSA 391

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP---ERNP 295
           +++G+AR G M  A+ +F QM  RN V  N ++    ++ Q EEAA++F EM    E N 
Sbjct: 392 LVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINS 451

Query: 296 VSWTTMIDGYVRIAKLDEARR---------LLDQMPYKNIAAQTAMISGYVQNKRMDEAN 346
            S   ++  +   + L E +R             +    I+   A+++ Y +   +D A 
Sbjct: 452 ESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNAC 511

Query: 347 QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----------------------- 383
            +F  + + D V WN MI G     R +EA++ F  M                       
Sbjct: 512 SVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLG 571

Query: 384 ----------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
                           ++ D+   N ++  YA+   +++  K+F +M    + VSWN+ I
Sbjct: 572 WLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQM-PEYDQVSWNSFI 630

Query: 428 SGFLQNEFH-LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
               + E   L ALK F+ M Q G + +  T    L+A +  + L LG QIH L +K   
Sbjct: 631 GALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSV 690

Query: 487 VNDLFVGNSLITMYAKCGRIQNAELLF-KDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
            +D  + N+L+  Y KC ++++ E++F + ++  D +SWNS+I+GY  +G   +A+ L  
Sbjct: 691 ADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVW 750

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRA 605
            M+  G   D  TF  VLSAC+ V  ++ G+++  C      +E  V   + ++D+ ++ 
Sbjct: 751 PMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRA-CLESDVVVGSALVDMYAKC 809

Query: 606 GRLDEAFEMVKGMKIKPNAGIWGTLLGACRMH 637
           G++D A    + M ++ N   W +++     H
Sbjct: 810 GKIDYASRFFELMPVR-NIYSWNSMISGYARH 840



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 141/517 (27%), Positives = 239/517 (46%), Gaps = 84/517 (16%)

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
           +D    N ++  Y +IGN   A+KL D MP KN+VSW+ ++SGYT+N     A   F+  
Sbjct: 173 DDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKG- 231

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWK--------------FFQKIP--EQNVVSWVTMLS 241
               V+S  L+ + +     L +  +              F  K+P     ++S V M  
Sbjct: 232 ----VISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSM 287

Query: 242 GYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF-------IEMPER- 293
               +G + +A R+FD++  RN V WN++I+ Y +RG    A +LF       +E+  R 
Sbjct: 288 YSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRP 347

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMP--------YKNIAAQTAMISGYVQNKRMDEA 345
           N  +  +++     +A  D    LL+QM          +++   +A+++G+ +   MD A
Sbjct: 348 NEYTLCSLVTAACSLA--DCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCA 405

Query: 346 NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM---------------------- 383
             IF ++   + V  N ++ G A+  + +EA  +F++M                      
Sbjct: 406 KMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSESLVVLLSTFTEFS 465

Query: 384 ---------------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
                                V+  I   N ++  Y +   +D+A  +F+ M   ++TVS
Sbjct: 466 NLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLM-PSKDTVS 524

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482
           WN++ISG   NE   +A+  F  M + G    + ++   LS+C+ L  L LGRQIH    
Sbjct: 525 WNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGF 584

Query: 483 KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYA-INGNATEAI 541
           K G   D+ V N+L+T+YA+   I   + +F      D +SWNS I   A    +  +A+
Sbjct: 585 KWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQAL 644

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
           K F EM+  G  P+ VTFI +L+A S   ++  G ++
Sbjct: 645 KYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQI 681



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 134/524 (25%), Positives = 226/524 (43%), Gaps = 106/524 (20%)

Query: 116 TCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN 175
           TC       E A  LF  L NK ++         Y  + +Y  +   L  + S+    + 
Sbjct: 101 TCVAGCDFPEMASHLFMRLLNKYNST--------YTFLRHYTFSHSQLQQLDSE-FDRYK 151

Query: 176 SMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
           +  S Y  N   HL  + ++     DV   N +++ YV + +L SA K F ++P++N+VS
Sbjct: 152 TSSSLYDAN---HLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVS 208

Query: 236 WVTMLSGYARNGRMLEARRLFD-------------------------------------- 257
           W  ++SGY +N    EA  LF                                       
Sbjct: 209 WSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAF 268

Query: 258 --QMP-IRNVVAWNAMIAAYVQ-RGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDE 313
             ++P + +++  N +++ Y    G I++A R+F E+  RN V+W ++I  Y R      
Sbjct: 269 ICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVS 328

Query: 314 ARRLLDQMPYKNI----------------AAQTAMISGYVQNKRMDEANQIFDKIGTHDV 357
           A +L   M  + +                AA +    G V  ++M    +I       D+
Sbjct: 329 AFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQM--LTRIEKSGFLRDL 386

Query: 358 VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK- 416
              + ++ G+A+ G MD A  +F+QM +++ VT N ++ G A+  Q ++A K+F+EM   
Sbjct: 387 YVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDL 446

Query: 417 -RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
              N+ S   L+S F +       LK       EGK+                     G+
Sbjct: 447 VEINSESLVVLLSTFTE----FSNLK-------EGKRK--------------------GQ 475

Query: 476 QIHHLAIKSGYVN-DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
           ++H    +SG V+  + +GN+L+ MY KC  I NA  +F+     D +SWNS+I+G   N
Sbjct: 476 EVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHN 535

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
               EA+  F  M   G+ P   + I  LS+CS +G +  G ++
Sbjct: 536 ERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQI 579



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 144/616 (23%), Positives = 258/616 (41%), Gaps = 115/616 (18%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           +    + G ++ A  IF QM  +N VT N ++   A+  +  +A K+F++M  ++LV  N
Sbjct: 393 VNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEM--KDLVEIN 450

Query: 82  S-----MIAGYLHNDKVKEAR----ELFDKMFRPDLFSWAL-----MITCYTRKGELEKA 127
           S     +++ +     +KE +    E+   +FR  L    +     ++  Y +   ++ A
Sbjct: 451 SESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNA 510

Query: 128 RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN----SMLSGYTK 183
             +F L+P+K DT  WN+M++G      + EA      M    +V  N    S LS  + 
Sbjct: 511 CSVFQLMPSK-DTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSS 569

Query: 184 NGEMHLASKF----FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTM 239
            G + L  +     F+   + DV   N +L  Y E D ++   K F ++PE + VSW + 
Sbjct: 570 LGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSF 629

Query: 240 LSGYAR-NGRMLEARRLFDQM------PIR----NVVAW--------------------- 267
           +   A+    +L+A + F +M      P R    N++A                      
Sbjct: 630 IGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYS 689

Query: 268 --------NAMIAAYVQRGQIEEAARLFIEMPER-NPVSWTTMIDGYVRIAKLDEARRL- 317
                   NA++A Y +  Q+E+   +F  M ER + VSW +MI GY+    L +A  L 
Sbjct: 690 VADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLV 749

Query: 318 ---------LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
                    LD   +  + +  A ++     + M+            DVV  + ++  YA
Sbjct: 750 WPMMQRGQKLDGFTFATVLSACASVA--TLERGMEVHACAVRACLESDVVVGSALVDMYA 807

Query: 369 QCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
           +CG++D A   F  M  ++I +WN+MI+GYA+      A+KIF                 
Sbjct: 808 KCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTR--------------- 852

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG-RQIHHLAIKSGYV 487
                            M Q G+  DH T    LSAC+H+  +  G +    +    G  
Sbjct: 853 -----------------MKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLS 895

Query: 488 NDLFVGNSLITMYAKCGRIQNAELLFKD--ADPVDVISWNSLIAGYA-INGNATEAIKLF 544
             +   + ++ +  + G ++  E   K    DP +++ W +++      NG  TE  +  
Sbjct: 896 PRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDP-NILIWRTVLGACCRANGRNTELGQRA 954

Query: 545 EEMVMEGVAPDPVTFI 560
            +M++E    + V ++
Sbjct: 955 AKMLIELEPQNAVNYV 970



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 151/302 (50%), Gaps = 15/302 (4%)

Query: 377 INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
           + L++     D+   NT+I  Y +I  +  A K+F+EM  ++N VSW+ LISG+ QN   
Sbjct: 164 LQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEM-PQKNLVSWSCLISGYTQNRMP 222

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAA--LQLGRQIHHLAIKSGYVNDLFVGN 494
            +A  +F  +   G   +H  +  AL AC    +  ++LG QIH    K   V+D+ + N
Sbjct: 223 DEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSN 282

Query: 495 SLITMYAKC-GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA 553
            L++MY+ C G I +A  +F +    + ++WNS+I+ Y   G+A  A KLF  M MEGV 
Sbjct: 283 VLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVE 342

Query: 554 ----PDPVTFIG-VLSACSHVGLVDGGLKLFECM-TEVYAIEPLVEHY--ACMIDLLSRA 605
               P+  T    V +ACS   L D GL L E M T +     L + Y  + +++  +R 
Sbjct: 343 LNLRPNEYTLCSLVTAACS---LADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARY 399

Query: 606 GRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLS 665
           G +D A  + K M  +    + G ++G  R HQ  +  ++  E    +E    S   LLS
Sbjct: 400 GLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSESLVVLLS 459

Query: 666 NM 667
             
Sbjct: 460 TF 461



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 95/183 (51%), Gaps = 20/183 (10%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           + + V  ++++  YAK G+++ A + FE MP RN+ SWNSMI+GY  +   ++A ++F +
Sbjct: 793 ESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTR 852

Query: 103 MFR----PDLFSWALMITCYTRKGELEKAR-------ELFDLLPNKEDTACWNAMVAGYA 151
           M +    PD  ++  +++  +  G +++         E++ L P  E  +C   MV    
Sbjct: 853 MKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSC---MVDLLG 909

Query: 152 KIGNYNEAKKLLDAMP-SKNIVSWNSMLSGYT----KNGEM-HLASKFFEAMEERDVVSW 205
           + G+  + +  +  MP   NI+ W ++L        +N E+   A+K    +E ++ V++
Sbjct: 910 RAGDVKKIEDFIKTMPMDPNILIWRTVLGACCRANGRNTELGQRAAKMLIELEPQNAVNY 969

Query: 206 NLM 208
            L+
Sbjct: 970 VLL 972



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 84/170 (49%), Gaps = 4/170 (2%)

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
           ++L     +H    K+G+ +D+F  N+LI +Y + G + +A  LF +    +++SW+ LI
Sbjct: 154 SSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLI 213

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL--VDGGLKLFECMTEVY 586
           +GY  N    EA  LF+ ++  G+ P+       L AC   G   +  G+++   + ++ 
Sbjct: 214 SGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLP 273

Query: 587 AIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA-CR 635
            +  ++     M      +G +D+A  +   +K + N+  W +++   CR
Sbjct: 274 CVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFR-NSVTWNSIISVYCR 322


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 242/747 (32%), Positives = 376/747 (50%), Gaps = 98/747 (13%)

Query: 81  NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN---K 137
           N ++  YL  + + +  E+F ++   D  SW  +IT YT  G+ ++A  +F  +     +
Sbjct: 66  NHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVR 125

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLL-----DAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
            D   + A++   A++G+ ++ + +        +  K++++ N +L  Y   G +  A  
Sbjct: 126 CDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLEGKSVLA-NLLLHIYGSCGCVASAML 184

Query: 193 FFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP----------------------- 229
            FE ME RD+VSWN  +    +  DLD A + FQ++                        
Sbjct: 185 LFERME-RDLVSWNAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAKIRQ 243

Query: 230 -------------EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ 276
                        EQ +V    + S YAR G + +A+ +FD+   R+VV+WNAM+ AY Q
Sbjct: 244 ARAIHSIVRESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQ 303

Query: 277 RGQIEEAARLFIEM-PERNPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTA 331
            G + EAA LF  M  E  P S  T+++     + L   R +    L++   ++I    A
Sbjct: 304 HGHMSEAALLFARMLHEGIPPSKVTLVNASTGCSSLRFGRMIHACALEKGLDRDIVLGNA 363

Query: 332 MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-------- 383
           ++  Y +    +EA  +F+ I   + V WN MI G +Q G+M  A+ LF++M        
Sbjct: 364 LLDMYTRCGSPEEARHLFEGI-PGNAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPV 422

Query: 384 --------------------------VNKDIVTW---------NTMIAGYAQIRQMDDAV 408
                                     ++  IV+            ++  YA    +D+A 
Sbjct: 423 RATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAA 482

Query: 409 KIFEE--MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
             F+   M  R + VSWNA+IS   Q+     AL  F  M   G   +  T    L ACA
Sbjct: 483 ASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACA 542

Query: 467 HLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF-KDADPVDVISWN 525
             AAL  G  +H     SG  +++FV  +L +MY +CG +++A  +F K A   DV+ +N
Sbjct: 543 GAAALTEGVIVHDHLRHSGMESNVFVATALASMYGRCGSLESAREIFEKVAVERDVVIFN 602

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
           ++IA Y+ NG A EA+KLF  M  EG  PD  +F+ VLSACSH GL D G ++F  M + 
Sbjct: 603 AMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQS 662

Query: 586 YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI 645
           Y I P  +HYAC +D+L RAG L +A E+++ M +KP   +W TLLGACR ++++  GR+
Sbjct: 663 YGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRL 722

Query: 646 AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705
           A   + EL+P   S Y +LSN+ A AG+WDE  +VR  ME  G +KQ G SWIE+K+++H
Sbjct: 723 ANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKQAGKSWIEIKSRVH 782

Query: 706 TFLSGDPKQCRTAEICNTLKTLAAQIR 732
            F++GD    R+ EI   L+ L A+IR
Sbjct: 783 EFVAGDRSHPRSEEIYRELERLHAEIR 809



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 59/114 (51%), Gaps = 2/114 (1%)

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
           L  GR+IH   +  G   +L  GN L+ +Y KC  + + E +F   +  D  SW ++I  
Sbjct: 45  LSQGRRIHARIVSLGLEEEL--GNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITA 102

Query: 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           Y  +G A  AI +F  M  EGV  D VTF+ VL AC+ +G +  G  +   + E
Sbjct: 103 YTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVE 156


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 229/755 (30%), Positives = 398/755 (52%), Gaps = 63/755 (8%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKE 95
           +I  Q   K+T+  N +I  Y++NG V+ AR++F+ +  ++  SW +MI+G   N+   E
Sbjct: 195 RIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVE 254

Query: 96  ARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVA 148
           A  LF  M+     P  ++++ +++   +   LE   +L  L   L    DT   NA+V+
Sbjct: 255 AIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVS 314

Query: 149 GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERD--- 201
            Y  +G+   A+ +   M  ++ V++N++++G ++ G    A + F+ M+    E D   
Sbjct: 315 LYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNT 374

Query: 202 ----VVSWN----------------------------LMLDGYVELDDLDSAWKFFQKIP 229
               VV+ +                             +L+ Y +  D+++A  +F +  
Sbjct: 375 LASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETE 434

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV----AWNAMIAAYVQRGQIEEAAR 285
            +NVV W  ML  Y     +  + R+F QM I  +V     + +++   ++ G +E   +
Sbjct: 435 VENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQ 494

Query: 286 LFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ--- 338
           +  ++ +     N    + +ID Y ++ KLD A  +L +   K++ + T MI+GY Q   
Sbjct: 495 IHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNF 554

Query: 339 -NKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV----NKDIVTWNT 393
            +K +    Q+ D+    D V     +   A    + E   +  Q      + D+   N 
Sbjct: 555 DDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNA 614

Query: 394 MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA 453
           ++  Y++   +++A   FE+     N ++WNAL+SGF Q+  + +AL++F  M +EG  +
Sbjct: 615 LVTLYSKCGNIEEAYLAFEQTEAGDN-IAWNALVSGFQQSGNNEEALRVFARMNREGIDS 673

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
           ++ T   A+ A +  A ++ G+Q+H +  K+GY ++  V N++I+MYAKCG I +A+  F
Sbjct: 674 NNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQF 733

Query: 514 KDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVD 573
            +    + +SWN++I  Y+ +G  +EA+  F++M+   V P+ VT +GVLSACSH+GLVD
Sbjct: 734 LELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVD 793

Query: 574 GGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
            G++ FE M   Y + P  EHY C++D+L+RAG L  A + +  M I+P+A +W TLL A
Sbjct: 794 KGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSA 853

Query: 634 CRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQP 693
           C +H+N+++G  A   L ELEP+ ++ Y LLSN++A   +WD  +  R  M+  G +K+P
Sbjct: 854 CVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEP 913

Query: 694 GCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLA 728
           G SWIEVKN IH+F  GD       EI    K L 
Sbjct: 914 GQSWIEVKNSIHSFYVGDQNHPLADEIHEYFKDLT 948



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/433 (25%), Positives = 213/433 (49%), Gaps = 35/433 (8%)

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
           +LD Y+   DLD A K F ++PE+ + +W  M+   A      +   LF +M   NV   
Sbjct: 109 LLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPN 168

Query: 268 NAMIAAYVQ--RGQ------IEEA-ARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
               +  ++  RG       +E+  AR+  +   ++ +    +ID Y R   +D ARR+ 
Sbjct: 169 EGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVF 228

Query: 319 DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA------QCGR 372
           D +  K+ ++  AMISG  +N+   EA ++F      D+    +M   YA       C +
Sbjct: 229 DGLYLKDHSSWVAMISGLSKNECEVEAIRLF-----CDMYVLGIMPTPYAFSSVLSACKK 283

Query: 373 MDEAINLFRQM--------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
           + E++ +  Q+         + D    N +++ Y  +  +  A  IF  M + R+ V++N
Sbjct: 284 I-ESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQ-RDAVTYN 341

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
            LI+G  Q  +   A+++F  M  +G + D +TLA  + AC+    L  G+Q+H    K 
Sbjct: 342 TLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKL 401

Query: 485 GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLF 544
           G+ ++  +  +L+ +YAKC  I+ A   F + +  +V+ WN ++  Y +  +   + ++F
Sbjct: 402 GFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIF 461

Query: 545 EEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYAC--MIDLL 602
            +M +E + P+  T+  +L  C  +G ++ G ++    +++      +  Y C  +ID+ 
Sbjct: 462 RQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIH---SQIIKTSFQLNAYVCSVLIDMY 518

Query: 603 SRAGRLDEAFEMV 615
           ++ G+LD A++++
Sbjct: 519 AKLGKLDTAWDIL 531



 Score = 90.9 bits (224), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 128/302 (42%), Gaps = 39/302 (12%)

Query: 371 GRMDEAINLFRQMV----NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNAL 426
           G +DE   L  Q++    + +      ++  Y     +D A+K+F+EM   R   +WN +
Sbjct: 82  GSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEM-PERTIFTWNKM 140

Query: 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC-AHLAALQLGRQIHHLAIKSG 485
           I              +F  M  E    +  T +  L AC     A  +  QIH   I  G
Sbjct: 141 IKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQG 200

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
                 V N LI +Y++ G +  A  +F      D  SW ++I+G + N    EAI+LF 
Sbjct: 201 LGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFC 260

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM------TEVYAIEPLV------- 592
           +M + G+ P P  F  VLSAC  +  ++ G +L   +      ++ Y    LV       
Sbjct: 261 DMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLG 320

Query: 593 -----EH------------YACMIDLLSRAGRLDEAFEMVKGMK---IKPNAGIWGTLLG 632
                EH            Y  +I+ LS+ G  ++A E+ K M+   ++P++    +L+ 
Sbjct: 321 SLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVV 380

Query: 633 AC 634
           AC
Sbjct: 381 AC 382



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 141/320 (44%), Gaps = 46/320 (14%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           QN  +T   K G +EEA   F Q    + + +N+++S + ++G   +A ++F +M +  +
Sbjct: 612 QNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGI 671

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
            S N     +     VK A E                 T   ++G  ++   +       
Sbjct: 672 DSNN-----FTFGSAVKAASE-----------------TANMKQG--KQVHAVITKTGYD 707

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            +T   NA+++ YAK G+ ++AKK    +  KN VSWN+M++ Y+K+G    A   F+ M
Sbjct: 708 SETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQM 767

Query: 198 EERDVVSWNLMLDGYV----ELDDLDSAWKFFQKI---------PEQNVVSWVTMLSGYA 244
              +V   ++ L G +     +  +D   ++F+ +         PE     +V ++    
Sbjct: 768 IHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEH----YVCVVDMLT 823

Query: 245 RNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTT 300
           R G +  A+    +MPI  + + W  +++A V    +   E AA   +E+   +  ++  
Sbjct: 824 RAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVL 883

Query: 301 MIDGYVRIAKLDEARRLLDQ 320
           + + Y    K D AR L  Q
Sbjct: 884 LSNLYAVCRKWD-ARDLTRQ 902


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 240/748 (32%), Positives = 380/748 (50%), Gaps = 69/748 (9%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           N ++  Y K   + D  ++F ++  R+  SW ++I  Y  + + K A  +F +M     R
Sbjct: 66  NHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVR 125

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL 162
            D  ++  ++    R G+L + R +   +     K  +   N ++  Y   G    A  L
Sbjct: 126 CDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLL 185

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS-- 220
            + M  +++VSWN+ ++   ++G++ +A + F+ M+   V    + L   + L    +  
Sbjct: 186 FEKM-ERDLVSWNAAIAANAQSGDLGIALELFQRMQLEGVRPARITL--VIALTVCATIR 242

Query: 221 ---AWKFFQKIP--EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
              A  F  +    EQ +V    + S YAR G + +A+ +FD+   R+VV+WNAM+ AY 
Sbjct: 243 QAQAIHFIVRESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYA 302

Query: 276 QRGQIEEAARLFIEM-PERNPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQT 330
           Q G + EAA LF  M  E    S  T+++     + L   R +    L++   ++I    
Sbjct: 303 QHGHMSEAALLFARMLHEGISPSKVTLVNASTGCSSLRFGRMIHGCALEKGLDRDIVLGN 362

Query: 331 AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM------- 383
           A++  Y +    +EA  +F +I   + V WN MI G +Q G+M  A+ LF++M       
Sbjct: 363 ALLDMYTRCGSPEEARHLFKRIPC-NAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAP 421

Query: 384 ---------------------------VNKDIVTW---------NTMIAGYAQIRQMDDA 407
                                      ++  IV+            ++  YA    +D+A
Sbjct: 422 VRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEA 481

Query: 408 VKIFEE--MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
              F+   M  R + VSWNA+IS   Q+     AL  F  M   G   +  T    L AC
Sbjct: 482 AASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDAC 541

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF-KDADPVDVISW 524
           A  AAL  G  +H     SG  ++LFV  +L +MY +CG +++A  +F K A   DV+ +
Sbjct: 542 AGAAALTEGEIVHDHLRHSGMESNLFVATALASMYGRCGSLESAREIFEKVAVERDVVIF 601

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           N++IA Y+ NG A EA+KLF  M  EG  PD  +F+ VLSACSH GL D G ++F  M +
Sbjct: 602 NAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQ 661

Query: 585 VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
            Y I P  +HYAC +D+L RAG L +A E+++ M +KP   +W TLLGACR ++++  GR
Sbjct: 662 SYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGR 721

Query: 645 IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQI 704
           +A   + EL+P   S Y +LSN+ A AG+WDE  +VR  ME  G +K+ G SWIE+K+++
Sbjct: 722 LANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKEAGKSWIEIKSRV 781

Query: 705 HTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           H F++GD    R+ EI   L+ L A+IR
Sbjct: 782 HEFVAGDRSHPRSEEIYRELERLHAEIR 809



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 2/105 (1%)

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
           L  GR+IH   +  G   +L  GN L+ +Y KC  + + E +F   +  D  SW ++I  
Sbjct: 45  LSQGRRIHARIVSLGLEEEL--GNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITA 102

Query: 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
           Y  +G A  AI +F  M  EGV  D VTF+ VL AC+ +G +  G
Sbjct: 103 YTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQG 147


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/633 (33%), Positives = 329/633 (51%), Gaps = 89/633 (14%)

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI----PE 230
           +S++  YT NG +H A   F+ +  RD + WN+ML+GYV+  D +SA   FQ++     +
Sbjct: 216 SSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVK 275

Query: 231 QNVVSWVTMLS-----------------------------------GYARNGRMLEARRL 255
            N VS+V +LS                                    Y++ G + +AR++
Sbjct: 276 PNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKI 335

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKL 311
           FD MP  + V WN +IA YVQ G  +EA  LF  M     + + +++ + +   ++   L
Sbjct: 336 FDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSL 395

Query: 312 DEARRLLDQM-----PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG 366
              + +   +     P+ ++  ++A++  Y +   ++ A + F +    DV     MI G
Sbjct: 396 KYCKEVHSYIVRHGVPF-DVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISG 454

Query: 367 YAQCGRMDEAINLFRQMVNKDIVTWNTMIAG----------------------------- 397
           Y   G   EA+NLFR ++ + +V     +A                              
Sbjct: 455 YVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKKGLENV 514

Query: 398 ----------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMT 447
                     YA+  ++D A + F  M   +++V WN +I  F QN     A+ +F  M 
Sbjct: 515 CQVGSSITYMYAKSGRLDLAYQFFRRM-PVKDSVCWNLMIVSFSQNGKPELAIDLFRQMG 573

Query: 448 QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
             G K D  +L+  LSACA+  AL  G+++H   +++ +++D FV ++LI MY+KCG++ 
Sbjct: 574 TSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFISDTFVASTLIDMYSKCGKLA 633

Query: 508 NAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
            A  +F   D  + +SWNS+IA Y  +G   E + LF EMV  G+ PD VTF+ ++SAC 
Sbjct: 634 LARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMSACG 693

Query: 568 HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIW 627
           H GLVD G+  F CMTE Y I   +EH+ACM+DL  RAGRL EAF+ +K M   P+AG W
Sbjct: 694 HAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDAGTW 753

Query: 628 GTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGS 687
           G+LLGACR+H N++L ++A + L EL+P  +  Y LLSN+HA AG W+ V KVR  M+  
Sbjct: 754 GSLLGACRLHGNVELAKLASKHLVELDPNNSGYYVLLSNVHAGAGEWESVLKVRSLMKEK 813

Query: 688 GAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           G QK PG SWI+V    H F + D    ++ EI
Sbjct: 814 GVQKIPGYSWIDVNGGTHMFSAADGCHPQSVEI 846



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 138/565 (24%), Positives = 249/565 (44%), Gaps = 66/565 (11%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           +S+I  Y  NG ++DA+ LF+++P R+ + WN M+ GY+ N     A   F +M     +
Sbjct: 216 SSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVK 275

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL 162
           P+  S+  +++    +G +    +L  L+     + D    N ++  Y+K GN  +A+K+
Sbjct: 276 PNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKI 335

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSWNLMLDGYVELDDL 218
            D MP  + V+WN +++GY +NG    A   F+AM     + D +++   L   ++   L
Sbjct: 336 FDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSL 395

Query: 219 DSAWKFFQKIPEQNVVSWVTMLSG----YARNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
               +    I    V   V + S     Y + G +  A + F Q  + +V    AMI+ Y
Sbjct: 396 KYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGY 455

Query: 275 VQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI---- 326
           V  G   EA  LF  + +     N ++  +++     +A L   + L   +  K +    
Sbjct: 456 VLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKKGLENVC 515

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN- 385
              +++   Y ++ R+D A Q F ++   D VCWN+MI  ++Q G+ + AI+LFRQM   
Sbjct: 516 QVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTS 575

Query: 386 --------------------------------------KDIVTWNTMIAGYAQIRQMDDA 407
                                                  D    +T+I  Y++  ++  A
Sbjct: 576 GTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALA 635

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
             +F+ M   +N VSWN++I+ +  +    + L +F  M + G + DH T    +SAC H
Sbjct: 636 RSVFDMM-DWKNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMSACGH 694

Query: 468 LAALQLG-RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD-PVDVISWN 525
              +  G      +  + G    +     ++ +Y + GR+  A    K      D  +W 
Sbjct: 695 AGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDAGTWG 754

Query: 526 SLIAGYAINGNATEAIKLFEEMVME 550
           SL+    ++GN  E  KL  + ++E
Sbjct: 755 SLLGACRLHGN-VELAKLASKHLVE 778



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 102/430 (23%), Positives = 186/430 (43%), Gaps = 80/430 (18%)

Query: 270 MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
           M+  YV     ++   LF  +     + W  +I G+  +   D A     +M   N+A  
Sbjct: 117 MLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSMLGCFDFALMFFFRMLGSNVAPD 176

Query: 330 ---------------------------------------TAMISGYVQNKRMDEANQIFD 350
                                                  +++I  Y  N  + +A  +FD
Sbjct: 177 KYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFD 236

Query: 351 KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN------------------------- 385
           ++   D + WNVM+ GY + G  + A+  F++M N                         
Sbjct: 237 ELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRA 296

Query: 386 --------------KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFL 431
                          D    NT+I  Y++   + DA KIF+ M  + +TV+WN LI+G++
Sbjct: 297 GIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIM-PQTDTVTWNGLIAGYV 355

Query: 432 QNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLF 491
           QN F  +A+ +F  M   G K D  T A  L +     +L+  +++H   ++ G   D++
Sbjct: 356 QNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVY 415

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
           + ++L+ +Y K G ++ A   F+    VDV    ++I+GY +NG   EA+ LF  ++ EG
Sbjct: 416 LKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEG 475

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
           + P+ +T   VL AC+ +  +  G +L  C      +E + +  + +  + +++GRLD A
Sbjct: 476 MVPNCLTMASVLPACAALASLKLGKEL-HCDILKKGLENVCQVGSSITYMYAKSGRLDLA 534

Query: 612 FEMVKGMKIK 621
           ++  + M +K
Sbjct: 535 YQFFRRMPVK 544



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 108/419 (25%), Positives = 177/419 (42%), Gaps = 78/419 (18%)

Query: 332 MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----- 386
           M+  YV  +   +   +F ++     + WN +I+G++  G  D A+  F +M+       
Sbjct: 117 MLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSMLGCFDFALMFFFRMLGSNVAPD 176

Query: 387 ----------------------------------DIVTWNTMIAGYAQIRQMDDAVKIFE 412
                                             D+   +++I  Y     + DA  +F+
Sbjct: 177 KYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFD 236

Query: 413 EMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQ 472
           E+   R+ + WN +++G+++N     AL  F  M     K +  +  C LS CA    ++
Sbjct: 237 EL-PVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVR 295

Query: 473 LGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYA 532
            G Q+H L I+SG+ +D  V N++ITMY+KCG + +A  +F      D ++WN LIAGY 
Sbjct: 296 AGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYV 355

Query: 533 INGNATEAIKLFEEMVMEGVAPDPVTFI---------GVLSACSHV-------------- 569
            NG   EA+ LF+ MV  GV  D +TF          G L  C  V              
Sbjct: 356 QNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVY 415

Query: 570 ---GLVD----GGLKLFECMTEVYAIEPLVEHYAC--MIDLLSRAGRLDEAFEMVKGM-- 618
               LVD    GG     C T  +    LV+   C  MI      G   EA  + + +  
Sbjct: 416 LKSALVDIYFKGGDVEMACKT--FQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQ 473

Query: 619 -KIKPNAGIWGTLLGACRMHQNIKLGR-IAVEKLSELEPQKTSCYALLSNMHAEAGRWD 675
             + PN     ++L AC    ++KLG+ +  + L +         + ++ M+A++GR D
Sbjct: 474 EGMVPNCLTMASVLPACAALASLKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLD 532



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 107/471 (22%), Positives = 183/471 (38%), Gaps = 122/471 (25%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  IT   K G + +A KIF  M Q +TVT+N +I+ Y +NG  ++A  LF+ M    + 
Sbjct: 317 NTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVK 376

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKAREL 130
              +++ S +   L +  +K  +E+   + R     D++  + ++  Y + G++E A + 
Sbjct: 377 LDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKT 436

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL----------------DAMPS------ 168
           F       D A   AM++GY   G   EA  L                   +P+      
Sbjct: 437 FQ-QNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALAS 495

Query: 169 ----------------KNIVSWNSMLSG-YTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
                           +N+    S ++  Y K+G + LA +FF  M  +D V WNLM+  
Sbjct: 496 LKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVS 555

Query: 212 YVELDDLDSAWKFFQK-----------------------------------------IPE 230
           + +    + A   F++                                         I +
Sbjct: 556 FSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFISD 615

Query: 231 QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
             V S  T++  Y++ G++  AR +FD M  +N V+WN++IAAY   G+  E   LF EM
Sbjct: 616 TFVAS--TLIDMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEM 673

Query: 291 PER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEAN 346
            E     + V++  ++        +DE            I     M   Y    RM+   
Sbjct: 674 VEAGIQPDHVTFLVIMSACGHAGLVDEG-----------IYYFRCMTEEYGICARMEH-- 720

Query: 347 QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIA 396
                        +  M+  Y + GR+ EA +  + M    D  TW +++ 
Sbjct: 721 -------------FACMVDLYGRAGRLHEAFDTIKSMPFTPDAGTWGSLLG 758



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 86/169 (50%), Gaps = 15/169 (8%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           +T   +++I  Y+K G++  AR +F+ M  +N VSWNS+IA Y ++ + +E  +LF +M 
Sbjct: 615 DTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEMV 674

Query: 104 ---FRPDLFSWALMITCYTRKGELEKA-------RELFDLLPNKEDTACWNAMVAGYAKI 153
               +PD  ++ ++++     G +++         E + +    E  AC   MV  Y + 
Sbjct: 675 EAGIQPDHVTFLVIMSACGHAGLVDEGIYYFRCMTEEYGICARMEHFAC---MVDLYGRA 731

Query: 154 GNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
           G  +EA   + +MP + +  +W S+L     +G + LA    + + E D
Sbjct: 732 GRLHEAFDTIKSMPFTPDAGTWGSLLGACRLHGNVELAKLASKHLVELD 780



 Score = 60.1 bits (144), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 14/178 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S  F  +  I    K G++  A  +F  M  KN V++NS+I+AY  +GR  +   LF +M
Sbjct: 614 SDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEM 673

Query: 73  P----QRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGE 123
                Q + V++  +++   H   V E    F  M         +  +A M+  Y R G 
Sbjct: 674 VEAGIQPDHVTFLVIMSACGHAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGR 733

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
           L +A +    +P   D   W +++      GN   AK     + SK++V  +   SGY
Sbjct: 734 LHEAFDTIKSMPFTPDAGTWGSLLGACRLHGNVELAK-----LASKHLVELDPNNSGY 786



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 44/92 (47%)

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
           RQIH   +  G    L +G+ ++ MY  C   ++   LF        + WN LI G+++ 
Sbjct: 96  RQIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSML 155

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
           G    A+  F  M+   VAPD  TF  V+ AC
Sbjct: 156 GCFDFALMFFFRMLGSNVAPDKYTFPYVIKAC 187


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 230/739 (31%), Positives = 381/739 (51%), Gaps = 63/739 (8%)

Query: 56  YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSW 111
           Y K G V DA  +F++M +R++ +WN+M+ GY+ N +   A E++ +M       D +++
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 112 ALMITCYTRKGELEKARELFDL-LPNKEDTACW--NAMVAGYAKIGNYNEAKKLLDAMPS 168
            +++       +L    E+  L +    D+  +  N++VA YAK  + N A+KL D M  
Sbjct: 62  PVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYV 121

Query: 169 KN-IVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK 227
           +N +VSWNS++S Y+ NG    A   F  M +  VV+        ++  +  S  K   +
Sbjct: 122 RNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQ 181

Query: 228 IPEQ--------NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ 279
           I           +V     +++ Y R G+M EA  +F  +  +++V WN+M+  ++Q G 
Sbjct: 182 IHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGL 241

Query: 280 IEEAARLFIEM------PER---------------------------------NPVSWTT 300
             EA   F ++      P++                                 N +   T
Sbjct: 242 YSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNT 301

Query: 301 MIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW 360
           +ID Y +   +    R  D M +K++ + T   +GY QNK   +A ++  ++    +   
Sbjct: 302 LIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVD 361

Query: 361 NVMI-------KGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEE 413
             MI       +G    G++ E      +    D V  NT+I  Y +   +D AV+IFE 
Sbjct: 362 ATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPVLQNTIIDVYGECGIIDYAVRIFES 421

Query: 414 MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQL 473
           + + ++ VSW ++IS ++ N     AL++F  M + G + D+ TL   LSA   L+ L+ 
Sbjct: 422 I-ECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKK 480

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           G++IH   I+ G++ +  + N+L+ MYA+CG +++A  +F      ++I W ++I+ Y +
Sbjct: 481 GKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGM 540

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVE 593
           +G    A++LF  M  E + PD +TF+ +L ACSH GLV+ G    E M   Y +EP  E
Sbjct: 541 HGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPE 600

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653
           HY C++DLL R   L+EA+++VK M+ +P   +W  LLGACR+H N ++G +A EKL EL
Sbjct: 601 HYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKEIGEVAAEKLLEL 660

Query: 654 EPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPK 713
           +      Y L+SN+ A  GRW +VE+VR+ M+GSG  K PGCSWIEV N+IH FLS D  
Sbjct: 661 DLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNPGCSWIEVGNKIHAFLSRDKL 720

Query: 714 QCRTAEICNTLKTLAAQIR 732
                +I   L  +  +++
Sbjct: 721 HPECDKIYQKLAQVTEKLK 739



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 124/499 (24%), Positives = 232/499 (46%), Gaps = 38/499 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKN-TVTYNSMISAYAKNGRVNDARKLFEQ 71
           S+VF  N  +    K   +  A K+F +M  +N  V++NS+ISAY+ NG   +A  LF +
Sbjct: 91  SFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSE 150

Query: 72  MPQRNLVSWNSMIAGYLH----NDKVKEARELFDKMFRP----DLFSWALMITCYTRKGE 123
           M +  +V+     A  L     +  +K   ++   + +     D++    ++  Y R G+
Sbjct: 151 MLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGK 210

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLS 179
           + +A  +F  L  K D   WN+M+ G+ + G Y+EA +    + + ++    VS  S++ 
Sbjct: 211 MPEAAVIFGNLEGK-DIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIV 269

Query: 180 -----GYTKNG-EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV 233
                GY  NG E+H  +   +   + +++  N ++D Y +   +    + F  +  +++
Sbjct: 270 ASGRLGYLLNGKEIHAYA--IKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDL 327

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR-------GQIEEAARL 286
           +SW T  +GYA+N   L+A  L  Q+ +  +     MI + +         G+I+E    
Sbjct: 328 ISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGY 387

Query: 287 FIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEAN 346
            I     +PV   T+ID Y     +D A R+ + +  K++ + T+MIS YV N   ++A 
Sbjct: 388 TIRGGLSDPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKAL 447

Query: 347 QIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIV----TWNTMIAGY 398
           ++F  +       D V    ++        + +   +   ++ K  +      NT++  Y
Sbjct: 448 EVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMY 507

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           A+   ++DA KIF    K RN + W A+IS +  + +   A+++F+ M  E    DH T 
Sbjct: 508 ARCGSVEDAYKIF-TCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITF 566

Query: 459 ACALSACAHLAALQLGRQI 477
              L AC+H   +  G+  
Sbjct: 567 LALLYACSHSGLVNEGKSF 585



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/300 (20%), Positives = 120/300 (40%), Gaps = 64/300 (21%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           QN  I   G+ G ++ A++IF  +  K+ V++ SMIS Y  NG  N A ++F  M +  L
Sbjct: 399 QNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGL 458

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
                                       PD  +   +++       L+K +E+   +  K
Sbjct: 459 ---------------------------EPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRK 491

Query: 138 E---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
               + +  N +V  YA+ G+  +A K+     ++N++ W +M+S Y  +G    A + F
Sbjct: 492 GFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELF 551

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
             M++  +                         IP+   ++++ +L   + +G + E + 
Sbjct: 552 MRMKDEKI-------------------------IPDH--ITFLALLYACSHSGLVNEGKS 584

Query: 255 LFDQMPIRNVVA-----WNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMIDGYVRI 308
             + M     +      +  ++    +R  +EEA ++   M  E  P  W  ++ G  RI
Sbjct: 585 FLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALL-GACRI 643



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 13/141 (9%)

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           MY KCG + +AE++F       + +WN+++ GY  NG A  A++++ EM   GV+ D  T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 559 FIGVLSACSHV-----GLVDGGLKL-FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
           F  +L AC  V     G    GL + + C + V+ +  LV  YA       +   ++ A 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYA-------KCNDINGAR 113

Query: 613 EMVKGMKIKPNAGIWGTLLGA 633
           ++   M ++ +   W +++ A
Sbjct: 114 KLFDRMYVRNDVVSWNSIISA 134


>gi|449527015|ref|XP_004170508.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Cucumis sativus]
          Length = 710

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 223/711 (31%), Positives = 375/711 (52%), Gaps = 61/711 (8%)

Query: 81  NSMIAGYLHNDKVKEARELFDKMFR------PDLFSWALMITCYTRKGELEKARELFDLL 134
           +S +  + HN + K   ELF  +         ++ S  + I+ + R G L+ A+ LF+ +
Sbjct: 5   SSSLGTWKHN-RWKACLELFSTLCEGLHTENSNIISTNIYISRHVRDGHLDLAQTLFNEM 63

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLS-----GYTKNG 185
           P +   + WN M++GY+K G Y+EA  L   M   N+     +++S+LS     G +  G
Sbjct: 64  PVRSVVS-WNIMISGYSKFGKYSEALNLASEMHCNNVKLNETTFSSLLSICAHSGCSSEG 122

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR 245
           +          ++  + V  + ++  Y  ++D+  A + F ++ ++N + W  +L GY +
Sbjct: 123 KQFHCLVLKSGLQIFERVG-SALVYFYANINDISGAKQVFDELHDKNDLLWDLLLVGYVK 181

Query: 246 NGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ-RGQIEEAARLFIEM---PERNP------ 295
              M +A  LF ++P R+VVAW  MI+AY +     +    LF  M    E  P      
Sbjct: 182 CNLMDDALDLFMKIPTRDVVAWTTMISAYARSEHNCKRGLELFCSMRMNGEVEPNEFTFD 241

Query: 296 -----------VSWTTMIDG--------------------YVRIAKLDEARRLLDQMPYK 324
                      +SW  ++ G                    Y +   +D A+ + D M   
Sbjct: 242 SVVRACGRMRYLSWGKVVHGILTKYGFHFDHSVCSALILFYCQCEAIDSAKAVYDSMERP 301

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
            + A  +++ G +   R+++A +IF K+   + V +N+M+KGYA  GR++ +  LF +M 
Sbjct: 302 CLKASNSLLEGLIFAGRINDAEEIFCKLREKNPVSYNLMLKGYATSGRIEGSKRLFERMT 361

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
           +K   + NTMI+ Y++  ++D A K+FE +    + V+WN++ISG++QN  H  ALK+++
Sbjct: 362 HKTTSSLNTMISVYSRNGEIDKAFKLFESVKSEGDPVTWNSMISGYIQNHQHEGALKLYI 421

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG 504
            M +   +   ST +    AC  L  +QLG+ +H  AI+  + ++++VG SLI MYAKCG
Sbjct: 422 TMCRTSVERSRSTFSALFQACTCLEYIQLGQALHVHAIREAFDSNVYVGTSLIDMYAKCG 481

Query: 505 RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLS 564
            I +A+  F      +V ++ +LI GY  +G   EA  +F+EM+   V P+  T +G+LS
Sbjct: 482 SIYDAQTSFASVCLPNVAAFTALINGYVHHGLGIEAFSVFDEMLKHKVPPNGATLLGILS 541

Query: 565 ACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNA 624
           ACS  G+V  G+ +F  M + Y + P +EHYAC++DLL R+GRL EA   ++ M I+ + 
Sbjct: 542 ACSCAGMVKEGMTVFHSMEKCYGVIPTLEHYACVVDLLGRSGRLYEAEAFIRCMPIEADR 601

Query: 625 GIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSM 684
            IWG LL AC    +++LG    +K+  L+P+  S Y +LSN++A+ G+W E   VR  +
Sbjct: 602 VIWGALLNACWFWMDLELGESVAKKVLSLDPKAISAYIILSNIYAKLGKWVEKINVRRKL 661

Query: 685 EGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNTP 735
                +K  GCSWI+V N+   F +GD        I +TL+ L A +  TP
Sbjct: 662 MSLKVKKIRGCSWIDVNNKTCVFSAGDRSHPNCNAIYSTLEHLLANV--TP 710



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 137/600 (22%), Positives = 265/600 (44%), Gaps = 101/600 (16%)

Query: 27  KSGRVEEAIKIFSQMSQ------KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSW 80
           K  R +  +++FS + +       N ++ N  IS + ++G ++ A+ LF +MP R++VSW
Sbjct: 12  KHNRWKACLELFSTLCEGLHTENSNIISTNIYISRHVRDGHLDLAQTLFNEMPVRSVVSW 71

Query: 81  NSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPN 136
           N MI+GY    K  EA  L  +M     + +  +++ +++     G   + ++ F  L  
Sbjct: 72  NIMISGYSKFGKYSEALNLASEMHCNNVKLNETTFSSLLSICAHSGCSSEGKQ-FHCLVL 130

Query: 137 KEDTACW----NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
           K     +    +A+V  YA I + + AK++ D +  KN + W+ +L GY K   M  A  
Sbjct: 131 KSGLQIFERVGSALVYFYANINDISGAKQVFDELHDKNDLLWDLLLVGYVKCNLMDDALD 190

Query: 193 FFEAMEERDVVSWNLMLDGYVELD-DLDSAWKFFQKI-------PEQ------------- 231
            F  +  RDVV+W  M+  Y   + +     + F  +       P +             
Sbjct: 191 LFMKIPTRDVVAWTTMISAYARSEHNCKRGLELFCSMRMNGEVEPNEFTFDSVVRACGRM 250

Query: 232 NVVSWVTMLSG--------------------YARNGRMLEARRLFDQMPIRNVVAWNAMI 271
             +SW  ++ G                    Y +   +  A+ ++D M    + A N+++
Sbjct: 251 RYLSWGKVVHGILTKYGFHFDHSVCSALILFYCQCEAIDSAKAVYDSMERPCLKASNSLL 310

Query: 272 AAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
              +  G+I +A  +F ++ E+NPVS+  M+ GY    +++ ++RL ++M +K  ++   
Sbjct: 311 EGLIFAGRINDAEEIFCKLREKNPVSYNLMLKGYATSGRIEGSKRLFERMTHKTTSSLNT 370

Query: 332 MISGYVQNKRMDEANQIFDKIGTH-DVVCWNVMIKGYAQCGRMDEAINLF---------- 380
           MIS Y +N  +D+A ++F+ + +  D V WN MI GY Q  + + A+ L+          
Sbjct: 371 MISVYSRNGEIDKAFKLFESVKSEGDPVTWNSMISGYIQNHQHEGALKLYITMCRTSVER 430

Query: 381 -----------------------------RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIF 411
                                        R+  + ++    ++I  YA+   + DA   F
Sbjct: 431 SRSTFSALFQACTCLEYIQLGQALHVHAIREAFDSNVYVGTSLIDMYAKCGSIYDAQTSF 490

Query: 412 EEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAAL 471
             +    N  ++ ALI+G++ +   ++A  +F  M +     + +TL   LSAC+    +
Sbjct: 491 ASVC-LPNVAAFTALINGYVHHGLGIEAFSVFDEMLKHKVPPNGATLLGILSACSCAGMV 549

Query: 472 QLGRQIHHLAIKS-GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWNSLI 528
           + G  + H   K  G +  L     ++ +  + GR+  AE   +   P+  D + W +L+
Sbjct: 550 KEGMTVFHSMEKCYGVIPTLEHYACVVDLLGRSGRLYEAEAFIR-CMPIEADRVIWGALL 608


>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Vitis vinifera]
          Length = 858

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 227/725 (31%), Positives = 378/725 (52%), Gaps = 42/725 (5%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIA-----GYLHNDKVKEARE 98
           KN      ++  YAK      A +LF ++  RN+ SW +++      G+   D +    E
Sbjct: 114 KNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGF-SEDALLGFIE 172

Query: 99  LFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACW---NAMVAGYAKIGN 155
           + +    PD F    ++        +   + +   +      AC    +++V  Y K G 
Sbjct: 173 MQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGV 232

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDG 211
             +A+K+ D+M  KN+V+WNSM+ GY +NG    A   F  M     E   V+    L  
Sbjct: 233 LEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSA 292

Query: 212 YVELDDL-----DSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA 266
              LD L       A      +   N++   ++++ Y++ G + +A  +F +M  ++VV 
Sbjct: 293 SANLDALIEGKQGHAIAILNSLDLDNILG-SSIINFYSKVGLIEDAELVFSRMLEKDVVT 351

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPERN----PVSWTTMIDGY-----VRIAKLDEA--- 314
           WN +I++YVQ  Q+ +A  +   M   N     V+ ++++        +++ K       
Sbjct: 352 WNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCI 411

Query: 315 RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMD 374
           RR L+     ++    ++I  Y + +R+D+A ++FD     D+V WN ++  YAQ G   
Sbjct: 412 RRNLES----DVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSG 467

Query: 375 EAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALI 427
           EA+ LF QM    V  ++++WN++I G+ +  Q+++A  +F +M   G + N ++W  LI
Sbjct: 468 EALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLI 527

Query: 428 SGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV 487
           SG  Q+ F  +A+  F  M + G +   +++   L AC  + +L  GR IH    +  + 
Sbjct: 528 SGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFC 587

Query: 488 NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
             + V  SL+ MYAKCG I  A+ +F      ++  +N++I+ YA++G A EA+ LF+ +
Sbjct: 588 LSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHL 647

Query: 548 VMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGR 607
             EG+ PD +TF  +LSACSH GLV+ GL LF  M   + + P++EHY C++ LLSR G 
Sbjct: 648 QKEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGN 707

Query: 608 LDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNM 667
           LDEA  ++  M  +P+A I G+LL ACR H  I+LG    + L +LEP  +  Y  LSN 
Sbjct: 708 LDEALRLILTMPFQPDAHILGSLLTACREHHEIELGEYLSKHLFKLEPSNSGNYVALSNA 767

Query: 668 HAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
           +A AGRW EV  +R  M+  G +K PGCSWI+   +++ F++GD    +T EI   L  L
Sbjct: 768 YAAAGRWVEVSNMRDLMKVRGLRKNPGCSWIQTGGKLNVFVAGDGSHPKTEEIYAMLAML 827

Query: 728 AAQIR 732
            +++R
Sbjct: 828 LSEMR 832



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 151/592 (25%), Positives = 276/592 (46%), Gaps = 59/592 (9%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G+ VF  +  +   GK G +E+A K+F  M +KN VT+NSMI  Y +NG   +A  +F  
Sbjct: 214 GACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYD 273

Query: 72  M------PQRNLVSWNSMIAGYLHNDKVKEARE-----LFDKMFRPDLFSWALMITCYTR 120
           M      P R  V+  S ++   + D + E ++     + + +   ++   ++ I  Y++
Sbjct: 274 MRVEGIEPTR--VTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSI-INFYSK 330

Query: 121 KGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNS 176
            G +E A  +F  +  K D   WN +++ Y +     +A  +   M S+N+    V+ +S
Sbjct: 331 VGLIEDAELVFSRMLEK-DVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSS 389

Query: 177 MLSGYTKNGEMHLASK----FFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQN 232
           +LS       + L  +          E DVV  N ++D Y + + +D A K F    E++
Sbjct: 390 ILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERD 449

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFI 288
           +V W T+L+ YA+ G   EA +LF QM       NV++WN++I  +++ GQ+ EA  +F 
Sbjct: 450 LVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFS 509

Query: 289 EMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMP----YKNIAAQTAMISGYVQNK 340
           +M     + N ++WTT+I G  +     EA     +M       +IA+ T+++       
Sbjct: 510 QMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIP 569

Query: 341 RMDEANQIFDKIGTHDVVCWNV-----MIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMI 395
            +     I   I  H+  C +V     ++  YA+CG +DEA  +F  M +K++  +N MI
Sbjct: 570 SLWYGRAIHGFITRHE-FCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMI 628

Query: 396 AGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK- 451
           + YA   Q  +A+ +F+ +   G   +++++ +++S         + L +F  M  +   
Sbjct: 629 SAYALHGQAVEALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNM 688

Query: 452 ---KADHSTLACALSACAHL-AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
                 +  +   LS C +L  AL+       L +   +  D  +  SL+T   +   I+
Sbjct: 689 NPIMEHYGCVVSLLSRCGNLDEALR-------LILTMPFQPDAHILGSLLTACREHHEIE 741

Query: 508 NAELLFKD---ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
             E L K     +P +  ++ +L   YA  G   E   + + M + G+  +P
Sbjct: 742 LGEYLSKHLFKLEPSNSGNYVALSNAYAAAGRWVEVSNMRDLMKVRGLRKNP 793



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 148/335 (44%), Gaps = 82/335 (24%)

Query: 10  NKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLF 69
           N  S V   N  I    K  R+++A K+F   ++++ V +N++++AYA+ G   +A KLF
Sbjct: 414 NLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLF 473

Query: 70  EQMP----QRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRK 121
            QM       N++SWNS+I G+L N +V EA+++F +M    F+P+L +W  +I+   + 
Sbjct: 474 YQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQS 533

Query: 122 GELEKARELFD-----------------LLPNKEDTACW--------------------- 143
           G   +A   F                  LL   +  + W                     
Sbjct: 534 GFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVA 593

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
            ++V  YAK G+ +EAKK+   M SK +  +N+M+S Y  +G+   A   F+ +++  + 
Sbjct: 594 TSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGI- 652

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM---- 259
                                     E + +++ ++LS  +  G + E   LF  M    
Sbjct: 653 --------------------------EPDSITFTSILSACSHAGLVNEGLNLFADMVSKH 686

Query: 260 ---PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
              PI     +  +++   + G ++EA RL + MP
Sbjct: 687 NMNPIME--HYGCVVSLLSRCGNLDEALRLILTMP 719



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 4/172 (2%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSG--YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
           L  C +  AL  G+QIH   +K+G  +  + +V   L+  YAKC   + A  LF      
Sbjct: 86  LQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVR 145

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
           +V SW +++      G + +A+  F EM   GV PD      VL AC  + L+  G  + 
Sbjct: 146 NVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVH 205

Query: 580 ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
             + ++      V   + ++D+  + G L++A ++   M ++ N   W +++
Sbjct: 206 GYVLKM-GFGACVFVSSSLVDMYGKCGVLEDARKVFDSM-VEKNVVTWNSMI 255


>gi|414586383|tpg|DAA36954.1| TPA: hypothetical protein ZEAMMB73_991125 [Zea mays]
          Length = 1021

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 233/773 (30%), Positives = 391/773 (50%), Gaps = 68/773 (8%)

Query: 27   KSGRVEEAIKIFSQM----SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNS 82
            + GR ++A+ +FS+M    S  + VT  ++IS  A  GR+ DAR L +++   + V+WN+
Sbjct: 235  RVGRYQQALALFSRMEKMGSVPDQVTCVTIISTLASMGRLGDARTLLKRIRMTSTVAWNA 294

Query: 83   MIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELF-DLLPNK 137
            +IA Y  +    E   L+  M      P   ++A +++        ++ R++    + + 
Sbjct: 295  VIASYSQSGLDSEVFGLYKDMKKQGLMPTRSTFASILSAAANMTAFDEGRQIHATAVKHG 354

Query: 138  EDTACW--NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
             D   +  ++++  Y K G  ++AKK+ D    KNIV WN++L G+ +N       + F+
Sbjct: 355  LDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQ 414

Query: 196  AME---------------------------------------ERDVVSWNLMLDGYVELD 216
             M                                        + D+   N MLD Y +L 
Sbjct: 415  YMRRADLEADDFTFVSVLGACINLYSLDLGRQVHCITIKNGMDADLFVANAMLDMYSKLG 474

Query: 217  DLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIA 272
             +D A   F  IP ++ VSW  ++ G A N    EA  +  +M    +    V++   I 
Sbjct: 475  AIDVAKALFSLIPVKDSVSWNALIVGLAHNEEEGEAINMLKRMKFYGIALDEVSFATAIN 534

Query: 273  AYVQRGQIEEAARLFIEMPERNPVS----WTTMIDGYVRIAKLDEARRLLDQMPYKNIAA 328
            A      IE   ++     + N  S     +++ID Y +   ++ +R++L  +   +I  
Sbjct: 535  ACSNIWAIETGKQIHSASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSIVP 594

Query: 329  QTAMISGYVQNKRMDEANQIFDKIGTHDV----VCWNVMIKGYAQ-----CGRMDEAINL 379
              A+I+G VQN R DEA ++F ++           +  ++ G  +      G+      L
Sbjct: 595  INALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILSGCTRPVSSVIGKQVHCYTL 654

Query: 380  FRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDA 439
               ++N+D     +++  Y + + ++DA K+ EE+   +N V W A ISG+ QN + + +
Sbjct: 655  KSAILNQDTSLGISLVGIYLKCKLLEDANKLLEEVPDHKNLVEWTATISGYAQNGYSVQS 714

Query: 440  LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
            L +F  M     ++D +T    L AC+ +AAL  G++IH L +KSG+V+     ++L+ M
Sbjct: 715  LVMFWRMRSYDVRSDEATFTSVLKACSEMAALTDGKEIHGLIVKSGFVSYETATSALMDM 774

Query: 500  YAKCGRIQNAELLFKD-ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
            Y+KCG + ++  +FK+  +  +++ WNS+I G+A NG A EA+ LF++M    + PD VT
Sbjct: 775  YSKCGDVISSFEIFKELKNRQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQIKPDDVT 834

Query: 559  FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
             +GVL ACSH GL+  GL  F+ M++VY I P V+HYAC+IDLL R G L +A E++  +
Sbjct: 835  LLGVLIACSHAGLISEGLHFFDSMSQVYGIVPRVDHYACLIDLLGRGGHLQKAQEVIDQL 894

Query: 619  KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVE 678
              + +  IW T L AC+MH++ + G++A +KL E+EPQ +S Y  LS++HA AG W E +
Sbjct: 895  PFRADGVIWATYLAACQMHKDEERGKVAAKKLVEMEPQSSSTYVFLSSLHAAAGNWVEAK 954

Query: 679  KVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
              R +M   G  K PGCSWI V N+   F+  D        I   L  L   +
Sbjct: 955  VAREAMREKGVMKFPGCSWITVGNKQSVFVVQDTHHPDALSIYKMLDDLTGMM 1007



 Score =  199 bits (507), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 133/514 (25%), Positives = 246/514 (47%), Gaps = 82/514 (15%)

Query: 106 PDLFSWALMITCYTRKGELEKARELF-DLLPNK--EDTACWNAMVAGYAKIGNYNEAKKL 162
           PD F  A++++  +R G LE  R++  D+L +       C   +V  YAK G  ++A+++
Sbjct: 155 PDQFGIAVVLSACSRLGALEHGRQVHCDVLKSGFCSSVFCQAGLVDMYAKCGEVDDARRM 214

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAW 222
            D +   + + W SM++GY + G    A   F  ME+                       
Sbjct: 215 FDGIACPDTICWTSMIAGYHRVGRYQQALALFSRMEK----------------------- 251

Query: 223 KFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEE 282
                +P+Q  V+ VT++S  A  GR+ +AR L  ++ + + VAWNA+IA+Y Q G   E
Sbjct: 252 --MGSVPDQ--VTCVTIISTLASMGRLGDARTLLKRIRMTSTVAWNAVIASYSQSGLDSE 307

Query: 283 AARLFIE------MPERNPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAM 332
              L+ +      MP R+  ++ +++     +   DE R++    +      N+   +++
Sbjct: 308 VFGLYKDMKKQGLMPTRS--TFASILSAAANMTAFDEGRQIHATAVKHGLDANVFVGSSL 365

Query: 333 ISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM--------- 383
           I+ YV++  + +A ++FD     ++V WN ++ G+ Q    +E I +F+ M         
Sbjct: 366 INLYVKHGCISDAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEADD 425

Query: 384 ------------------------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEE 413
                                         ++ D+   N M+  Y+++  +D A  +F  
Sbjct: 426 FTFVSVLGACINLYSLDLGRQVHCITIKNGMDADLFVANAMLDMYSKLGAIDVAKALFSL 485

Query: 414 MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQL 473
           +   +++VSWNALI G   NE   +A+ +   M   G   D  + A A++AC+++ A++ 
Sbjct: 486 I-PVKDSVSWNALIVGLAHNEEEGEAINMLKRMKFYGIALDEVSFATAINACSNIWAIET 544

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           G+QIH  +IK    ++  VG+SLI +Y+K G ++++  +    D   ++  N+LI G   
Sbjct: 545 GKQIHSASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSIVPINALITGLVQ 604

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
           N    EAI+LF++++ +G  P   TF  +LS C+
Sbjct: 605 NNREDEAIELFQQVLKDGFKPSNFTFTSILSGCT 638



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 176/333 (52%), Gaps = 11/333 (3%)

Query: 307 RIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNV 362
           R+  L+  R++    L      ++  Q  ++  Y +   +D+A ++FD I   D +CW  
Sbjct: 169 RLGALEHGRQVHCDVLKSGFCSSVFCQAGLVDMYAKCGEVDDARRMFDGIACPDTICWTS 228

Query: 363 MIKGYAQCGRMDEAINLFRQMVN----KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRR 418
           MI GY + GR  +A+ LF +M       D VT  T+I+  A + ++ DA  + + + +  
Sbjct: 229 MIAGYHRVGRYQQALALFSRMEKMGSVPDQVTCVTIISTLASMGRLGDARTLLKRI-RMT 287

Query: 419 NTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIH 478
           +TV+WNA+I+ + Q+    +   ++  M ++G     ST A  LSA A++ A   GRQIH
Sbjct: 288 STVAWNAVIASYSQSGLDSEVFGLYKDMKKQGLMPTRSTFASILSAAANMTAFDEGRQIH 347

Query: 479 HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNAT 538
             A+K G   ++FVG+SLI +Y K G I +A+ +F  +   +++ WN+++ G+  N    
Sbjct: 348 ATAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAILYGFVQNELQE 407

Query: 539 EAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACM 598
           E I++F+ M    +  D  TF+ VL AC ++  +D G ++  C+T    ++  +     M
Sbjct: 408 ETIQMFQYMRRADLEADDFTFVSVLGACINLYSLDLGRQV-HCITIKNGMDADLFVANAM 466

Query: 599 IDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           +D+ S+ G +D A  +   + +K +   W  L+
Sbjct: 467 LDMYSKLGAIDVAKALFSLIPVKDSVS-WNALI 498



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 133/593 (22%), Positives = 268/593 (45%), Gaps = 48/593 (8%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  +  I    K G + +A K+F   ++KN V +N+++  + +N    +  ++F+ M +
Sbjct: 359 VFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRR 418

Query: 75  RNL----VSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEK 126
            +L     ++ S++   ++   +   R++     +     DLF    M+  Y++ G ++ 
Sbjct: 419 ADLEADDFTFVSVLGACINLYSLDLGRQVHCITIKNGMDADLFVANAMLDMYSKLGAIDV 478

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYT 182
           A+ LF L+P K D+  WNA++ G A      EA  +L  M    I    VS+ + ++  +
Sbjct: 479 AKALFSLIPVK-DSVSWNALIVGLAHNEEEGEAINMLKRMKFYGIALDEVSFATAINACS 537

Query: 183 K------NGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSW 236
                    ++H AS  +       V S   ++D Y +  D++S+ K    +   ++V  
Sbjct: 538 NIWAIETGKQIHSASIKYNVCSNHAVGSS--LIDLYSKFGDVESSRKVLAHVDASSIVPI 595

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR---------GQIEEAARLF 287
             +++G  +N R  EA  LF Q+        N    + +           G+      L 
Sbjct: 596 NALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILSGCTRPVSSVIGKQVHCYTLK 655

Query: 288 IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP-YKNIAAQTAMISGYVQNKRMDEAN 346
             +  ++     +++  Y++   L++A +LL+++P +KN+   TA ISGY QN    ++ 
Sbjct: 656 SAILNQDTSLGISLVGIYLKCKLLEDANKLLEEVPDHKNLVEWTATISGYAQNGYSVQSL 715

Query: 347 QIFDKIGTHDV----VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAG----Y 398
            +F ++ ++DV      +  ++K  ++   + +   +   +V    V++ T  +     Y
Sbjct: 716 VMFWRMRSYDVRSDEATFTSVLKACSEMAALTDGKEIHGLIVKSGFVSYETATSALMDMY 775

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           ++   +  + +IF+E+  R+N + WN++I GF +N +  +AL +F  M +   K D  TL
Sbjct: 776 SKCGDVISSFEIFKELKNRQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQIKPDDVTL 835

Query: 459 ACALSACAHLAALQLGRQIHHLAIKS---GYVNDLFVGNSLITMYAKCGRIQNAELLFKD 515
              L AC+H   +  G  +H     S   G V  +     LI +  + G +Q A+ +  D
Sbjct: 836 LGVLIACSHAGLISEG--LHFFDSMSQVYGIVPRVDHYACLIDLLGRGGHLQKAQEVI-D 892

Query: 516 ADP--VDVISWNSLIAGYAINGNATEAIKLFEEMV-MEGVAPDPVTFIGVLSA 565
             P   D + W + +A   ++ +        +++V ME  +     F+  L A
Sbjct: 893 QLPFRADGVIWATYLAACQMHKDEERGKVAAKKLVEMEPQSSSTYVFLSSLHA 945



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 93/189 (49%), Gaps = 12/189 (6%)

Query: 450 GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA 509
           G   D   +A  LSAC+ L AL+ GRQ+H   +KSG+ + +F    L+ MYAKCG + +A
Sbjct: 152 GSTPDQFGIAVVLSACSRLGALEHGRQVHCDVLKSGFCSSVFCQAGLVDMYAKCGEVDDA 211

Query: 510 ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
             +F      D I W S+IAGY   G   +A+ LF  M   G  PD VT + ++S  + +
Sbjct: 212 RRMFDGIACPDTICWTSMIAGYHRVGRYQQALALFSRMEKMGSVPDQVTCVTIISTLASM 271

Query: 570 GLVDGGLKLFE--CMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMK---IKPNA 624
           G +     L +   MT   A   ++  Y       S++G   E F + K MK   + P  
Sbjct: 272 GRLGDARTLLKRIRMTSTVAWNAVIASY-------SQSGLDSEVFGLYKDMKKQGLMPTR 324

Query: 625 GIWGTLLGA 633
             + ++L A
Sbjct: 325 STFASILSA 333



 Score = 42.7 bits (99), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 77/170 (45%), Gaps = 16/170 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQK----NTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           N  I    K+G   EA+ +F +M +     + VT   ++ A +  G +++    F+ M Q
Sbjct: 801 NSMIVGFAKNGYANEALLLFQKMQESQIKPDDVTLLGVLIACSHAGLISEGLHFFDSMSQ 860

Query: 75  -----RNLVSWNSMIAGYLHNDKVKEARELFDKM-FRPDLFSWA-LMITCYTRKGELE-- 125
                  +  +  +I        +++A+E+ D++ FR D   WA  +  C   K E    
Sbjct: 861 VYGIVPRVDHYACLIDLLGRGGHLQKAQEVIDQLPFRADGVIWATYLAACQMHKDEERGK 920

Query: 126 -KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSW 174
             A++L ++ P    T  +  + + +A  GN+ EAK   +AM  K ++ +
Sbjct: 921 VAAKKLVEMEPQSSSTYVF--LSSLHAAAGNWVEAKVAREAMREKGVMKF 968


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 229/767 (29%), Positives = 377/767 (49%), Gaps = 87/767 (11%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLF-------EQMPQRNLVS 79
           ++G +  A K+F +M ++N VT+++M+SA   +G   ++  +F       +  P   ++S
Sbjct: 91  RAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGFYEESLVVFLDFWRTRKNSPNEYILS 150

Query: 80  WNSMIAGYLHNDK----VKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
                   L         +    L    F  D++   L+I  Y ++G ++ AR +FD LP
Sbjct: 151 SFIQACSGLDGSGRWMVFQLQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDYARLVFDALP 210

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK--------NGEM 187
            K  T  W  M++G  K+G    + +L   +   N+V    +LS             G  
Sbjct: 211 EK-STVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVLSACSILPFLEGGK 269

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
            + +       E+D    N+++D YV+   + +A K F  +P +N++SW T+LSGY +N 
Sbjct: 270 QIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQNS 329

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVR 307
              EA  LF  MP             +  +  +   + +       + + + T +  Y  
Sbjct: 330 LHKEAMELFTSMP------------KFGLKPDMFACSSILTSCASLHALEFGTQVHAYTI 377

Query: 308 IAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367
            A L             +     ++I  Y +   + EA ++FD     DVV +N MI+GY
Sbjct: 378 KANLG-----------NDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGY 426

Query: 368 AQCG---RMDEAINLFRQM---------------------------------------VN 385
           ++ G    + +A+N+F  M                                       +N
Sbjct: 427 SRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKFGLN 486

Query: 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVL 445
            DI   + +IA Y+    + D+  +F+EM K ++ V WN++ SG++Q   + +AL +F+ 
Sbjct: 487 LDIFAGSALIAVYSNCYCLKDSRLVFDEM-KVKDLVIWNSMFSGYVQQSENEEALNLFLE 545

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
           +     + D  T    ++A  +LA+LQLG++ H   +K G   + ++ N+L+ MYAKCG 
Sbjct: 546 LQLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGS 605

Query: 506 IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565
            ++A   F  A   DV+ WNS+I+ YA +G   +A+++ E+M+ EG+ P+ +TF+GVLSA
Sbjct: 606 PEDAHKAFDSAASRDVVCWNSVISSYANHGEGRKALQMLEKMMCEGIEPNYITFVGVLSA 665

Query: 566 CSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAG 625
           CSH GLV+ GLK FE M   + IEP  EHY CM+ LL RAGRL+EA E+++ M  KP A 
Sbjct: 666 CSHAGLVEDGLKQFELMLR-FGIEPETEHYVCMVSLLGRAGRLNEARELIEKMPTKPAAI 724

Query: 626 IWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685
           +W +LL  C    N++L   A E     +P+ +  + LLSN++A  G W + +KVR  M+
Sbjct: 725 VWRSLLSGCAKAGNVELAEYAAEMAILSDPKDSGSFTLLSNIYASKGMWTDAKKVRERMK 784

Query: 686 GSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
             G  K+PG SWIE+  ++H FLS D   C+  +I   L  L  QIR
Sbjct: 785 FEGVVKEPGRSWIEINKEVHIFLSKDKSHCKANQIYEVLDDLLVQIR 831



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 154/598 (25%), Positives = 283/598 (47%), Gaps = 50/598 (8%)

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL--- 163
           D +   +++  Y+R G +  AR++F+ +P + +   W+ MV+     G Y E+  +    
Sbjct: 78  DTYLSNILMNLYSRAGGMVYARKVFEKMPER-NLVTWSTMVSACNHHGFYEESLVVFLDF 136

Query: 164 ----DAMPSKNIVS-WNSMLSGYTKNGE---MHLASKFFEAMEERDVVSWNLMLDGYVEL 215
                  P++ I+S +    SG   +G      L S   ++  +RDV    L++D Y++ 
Sbjct: 137 WRTRKNSPNEYILSSFIQACSGLDGSGRWMVFQLQSFLVKSRFDRDVYVGTLLIDFYLKE 196

Query: 216 DDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
            ++D A   F  +PE++ V+W TM+SG  + GR   + +LF Q+   NVV    +++  +
Sbjct: 197 GNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILSTVL 256

Query: 276 Q--------RGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
                     G  +  A +     E++      +ID YV+  ++  A +L D MP KNI 
Sbjct: 257 SACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNII 316

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDV-----VCWNVMIKGYA----QCGRMDEAIN 378
           + T ++SGY QN    EA ++F  +    +      C +++    +    + G    A  
Sbjct: 317 SWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYT 376

Query: 379 LFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF----LQNE 434
           +   + N   VT N++I  YA+   + +A K+F+      + V +NA+I G+     Q E
Sbjct: 377 IKANLGNDSYVT-NSLIDMYAKCDCLTEARKVFDIFAAD-DVVLFNAMIEGYSRLGTQWE 434

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN 494
            H DAL IF  M     +    T    L A A L +L L +QIH L  K G   D+F G+
Sbjct: 435 LH-DALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKFGLNLDIFAGS 493

Query: 495 SLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP 554
           +LI +Y+ C  ++++ L+F +    D++ WNS+ +GY       EA+ LF E+ +    P
Sbjct: 494 ALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRP 553

Query: 555 DPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE--PLVEHYACMIDLLSRAGRLDEAF 612
           D  TF+ +++A  ++  +  G + F C      +E  P + +   ++D+ ++ G  ++A 
Sbjct: 554 DEFTFVDMVTAAGNLASLQLGQE-FHCQLLKRGLECNPYITN--ALLDMYAKCGSPEDAH 610

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL-----EPQKTSCYALLS 665
           +       + +   W +++ +   H     GR A++ L ++     EP   +   +LS
Sbjct: 611 KAFDSAASR-DVVCWNSVISSYANHGE---GRKALQMLEKMMCEGIEPNYITFVGVLS 664



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 134/564 (23%), Positives = 245/564 (43%), Gaps = 85/564 (15%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I    K GRV  A K+F  M  KN +++ +++S Y +N    +A +LF  MP+  L 
Sbjct: 288 NVLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGL- 346

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL--FDLLPN 136
                                     +PD+F+ + ++T       LE   ++  + +  N
Sbjct: 347 --------------------------KPDMFACSSILTSCASLHALEFGTQVHAYTIKAN 380

Query: 137 -KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG---EMHLASK 192
              D+   N+++  YAK     EA+K+ D   + ++V +N+M+ GY++ G   E+H A  
Sbjct: 381 LGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHDALN 440

Query: 193 FFEAMEER----DVVSWNLMLDGYVELDDLDSAWKF----FQKIPEQNVVSWVTMLSGYA 244
            F  M  R     ++++  +L     L  L  + +     F+     ++ +   +++ Y+
Sbjct: 441 IFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYS 500

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTT 300
               + ++R +FD+M ++++V WN+M + YVQ+ + EEA  LF+E+       +  ++  
Sbjct: 501 NCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPDEFTFVD 560

Query: 301 MIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIGTHD 356
           M+     +A L   +    Q+  + +        A++  Y +    ++A++ FD   + D
Sbjct: 561 MVTAAGNLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRD 620

Query: 357 VVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
           VVCWN +I  YA  G   +A+ +  +M+ +                            G 
Sbjct: 621 VVCWNSVISSYANHGEGRKALQMLEKMMCE----------------------------GI 652

Query: 417 RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ 476
             N +++  ++S         D LK F LM + G + +     C +S       L   R+
Sbjct: 653 EPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYVCMVSLLGRAGRLNEARE 712

Query: 477 -IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA---DPVDVISWNSLIAGYA 532
            I  +  K   +    V  SL++  AK G ++ AE   + A   DP D  S+  L   YA
Sbjct: 713 LIEKMPTKPAAI----VWRSLLSGCAKAGNVELAEYAAEMAILSDPKDSGSFTLLSNIYA 768

Query: 533 INGNATEAIKLFEEMVMEGVAPDP 556
             G  T+A K+ E M  EGV  +P
Sbjct: 769 SKGMWTDAKKVRERMKFEGVVKEP 792



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 161/348 (46%), Gaps = 32/348 (9%)

Query: 9   GNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG---RVNDA 65
            N G+  +  N  I    K   + EA K+F   +  + V +N+MI  Y++ G    ++DA
Sbjct: 379 ANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHDA 438

Query: 66  RKLFEQMPQR----NLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITC 117
             +F  M  R    +L+++ S++        +  ++++   MF+     D+F+ + +I  
Sbjct: 439 LNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAV 498

Query: 118 YTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKL-LDAMPSKNI---VS 173
           Y+    L+ +R +FD +  K D   WN+M +GY +     EA  L L+   S++     +
Sbjct: 499 YSNCYCLKDSRLVFDEMKVK-DLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPDEFT 557

Query: 174 WNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIP 229
           +  M++       + L  +F   + +R +       N +LD Y +    + A K F    
Sbjct: 558 FVDMVTAAGNLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAA 617

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAAR 285
            ++VV W +++S YA +G   +A ++ ++M       N + +  +++A    G +E+  +
Sbjct: 618 SRDVVCWNSVISSYANHGEGRKALQMLEKMMCEGIEPNYITFVGVLSACSHAGLVEDGLK 677

Query: 286 LFIEM------PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
            F  M      PE     +  M+    R  +L+EAR L+++MP K  A
Sbjct: 678 QFELMLRFGIEPETE--HYVCMVSLLGRAGRLNEARELIEKMPTKPAA 723


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/503 (37%), Positives = 299/503 (59%), Gaps = 2/503 (0%)

Query: 231 QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ-RGQIEEAARLFIE 289
            +VVS    ++ + R   +  AR +F++M +R  V WN M++ Y +  G+++EA  LF +
Sbjct: 71  SDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDK 130

Query: 290 MPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF 349
           +PE + VS+  M+  Y+R   ++ A    ++MP K+IA+   +ISG+ QN +M +A  +F
Sbjct: 131 IPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLF 190

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVK 409
             +   + V W+ MI GY + G ++ A  L++ +  K +V    M+ GY +  +++ A +
Sbjct: 191 SVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAER 250

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           IF+ M  + N V+WN++I+G+++N    D LK+F  M +   + +  +L+  L  C++L+
Sbjct: 251 IFQRMAVK-NLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLS 309

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
           AL LGRQ+H L  KS    D     SLI+MY KCG + +A  LF +    DVISWN++I+
Sbjct: 310 ALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMIS 369

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE 589
           GYA +G   +A+ LF++M    + PD +TF+ V+ AC+H G VD G++ F+ M + + IE
Sbjct: 370 GYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIE 429

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649
               HY C+IDLL RAGRLDEA  ++K M  KP+A I+GTLLGACR+H+N+ L   A   
Sbjct: 430 AKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAARN 489

Query: 650 LSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLS 709
           L  L+P   + Y  L+N++A   +WD+V KVR  M+     K PG SWIE+K+  H F S
Sbjct: 490 LLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRS 549

Query: 710 GDPKQCRTAEICNTLKTLAAQIR 732
            D        I   L  L  +++
Sbjct: 550 SDRLHPELTSIHKKLNELDGKMK 572



 Score =  203 bits (516), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 124/405 (30%), Positives = 219/405 (54%), Gaps = 21/405 (5%)

Query: 42  SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLH-NDKVKEARELF 100
           +  + V+ N  I+++ +   +  AR +FE+M  R  V+WN+M++GY     KVKEA ELF
Sbjct: 69  TASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELF 128

Query: 101 DKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
           DK+  PD  S+ +M+ CY R   +E A   F+ +P K D A WN +++G+A+ G   +A 
Sbjct: 129 DKIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVK-DIASWNTLISGFAQNGQMQKAF 187

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
            L   MP KN VSW++M+SGY ++G++  A + ++ +  + VV    ML GY++   ++ 
Sbjct: 188 DLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVEL 247

Query: 221 AWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQI 280
           A + FQ++  +N+V+W +M++GY  N R  +  ++F  M I + V  N +  + V  G  
Sbjct: 248 AERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTM-IESRVRPNPLSLSSVLLGCS 306

Query: 281 EEAA----RLFIEMPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
             +A    R   ++  ++P+S      T++I  Y +   LD A +L  +MP K++ +  A
Sbjct: 307 NLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNA 366

Query: 332 MISGYVQNKRMDEANQIFDKI--GT--HDVVCWNVMIKGYAQCGRMDEAINLFRQM---- 383
           MISGY Q+    +A  +FDK+  GT   D + +  +I      G +D  +  F+ M    
Sbjct: 367 MISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEF 426

Query: 384 -VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
            +    V +  +I    +  ++D+AV + +EM  + +   +  L+
Sbjct: 427 GIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLL 471



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 122/415 (29%), Positives = 221/415 (53%), Gaps = 19/415 (4%)

Query: 10  NKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAK-NGRVNDARKL 68
           +  S V + NK I    ++  +E A  +F +MS + TVT+N+M+S Y K  G+V +A +L
Sbjct: 68  DTASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHEL 127

Query: 69  FEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAR 128
           F+++P+ + VS+N M+  YL +  V+ A   F+KM   D+ SW  +I+ + + G+++KA 
Sbjct: 128 FDKIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAF 187

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
           +LF ++P K   + W+AM++GY + G+   A++L   +  K++V   +ML+GY K G++ 
Sbjct: 188 DLFSVMPEKNGVS-WSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVE 246

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYA 244
           LA + F+ M  +++V+WN M+ GYVE    +   K F+ + E     N +S  ++L G +
Sbjct: 247 LAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCS 306

Query: 245 RNGRMLEAR---RLFDQMPI-RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTT 300
               +   R   +L  + P+ ++  A  ++I+ Y + G ++ A +LF+EMP ++ +SW  
Sbjct: 307 NLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNA 366

Query: 301 MIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIGTH- 355
           MI GY +     +A  L D+M    +        A+I        +D   Q F  +    
Sbjct: 367 MISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEF 426

Query: 356 ----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDD 406
                 V +  +I    + GR+DEA++L ++M  K        + G  +I +  D
Sbjct: 427 GIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLD 481



 Score =  187 bits (476), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 173/333 (51%), Gaps = 40/333 (12%)

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK-NGEMHLASKFFEAM 197
           D    N  +A + +  +   A+ + + M  +  V+WN+MLSGYTK  G++  A + F+ +
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFD 257
            E D VS+N+ML  Y+    +++A  FF K+P +++ SW T++SG+A+NG+M +A  LF 
Sbjct: 132 PEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFS 191

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL 317
            MP +N V+W+AMI+ YV+ G +E A  L+  +  ++ V  T M+ GY++  K++ A R+
Sbjct: 192 VMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERI 251

Query: 318 LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI------------------------- 352
             +M  KN+    +MI+GYV+N R ++  ++F  +                         
Sbjct: 252 FQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSAL 311

Query: 353 --------------GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGY 398
                          + D      +I  Y +CG +D A  LF +M  KD+++WN MI+GY
Sbjct: 312 PLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGY 371

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFL 431
           AQ      A+ +F++M        W   ++  L
Sbjct: 372 AQHGAGRKALHLFDKMRNGTMKPDWITFVAVIL 404



 Score =  162 bits (409), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 182/339 (53%), Gaps = 23/339 (6%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           +S  VE A+  F++M  K+  ++N++IS +A+NG++  A  LF  MP++N VSW++MI+G
Sbjct: 148 RSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISG 207

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
           Y+ +  ++ A EL+  +    +     M+T Y + G++E A  +F  +  K +   WN+M
Sbjct: 208 YVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVK-NLVTWNSM 266

Query: 147 VAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSMLSGYTKNGEMHLASKFFEAMEE--- 199
           +AGY +     +  K+   M       N +S +S+L G +    + L  +  + + +   
Sbjct: 267 IAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPL 326

Query: 200 -RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
            +D  +   ++  Y +  DLDSAWK F ++P ++V+SW  M+SGYA++G   +A  LFD+
Sbjct: 327 SKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDK 386

Query: 259 MPIRNV------VAWNAMIAAYVQRGQIEEAARLFIEMP-----ERNPVSWTTMIDGYVR 307
           M  RN       + + A+I A    G ++   + F  M      E  PV +T +ID   R
Sbjct: 387 M--RNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGR 444

Query: 308 IAKLDEARRLLDQMPYKNIAAQTAMISGYVQ-NKRMDEA 345
             +LDEA  L+ +MP+K  AA    + G  + +K +D A
Sbjct: 445 AGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLA 483



 Score = 39.3 bits (90), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 53/267 (19%), Positives = 115/267 (43%), Gaps = 55/267 (20%)

Query: 488 NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYA-INGNATEAIKLFEE 546
           +D+   N  I  + +   +++A  +F+       ++WN++++GY  + G   EA +LF++
Sbjct: 71  SDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDK 130

Query: 547 MVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL--VEHYACMIDLLSR 604
           +      PD V++  +L        V+  L  F  M       P+  +  +  +I   ++
Sbjct: 131 I----PEPDSVSYNIMLVCYLRSYGVEAALAFFNKM-------PVKDIASWNTLISGFAQ 179

Query: 605 AGRLDEAFEMVKGMKIKPNAGIW----------GTLLGACRMHQNIKLGRIAVEKLSELE 654
            G++ +AF++   M  K N   W          G L  A  +++N+ +  + VE      
Sbjct: 180 NGQMQKAFDLFSVMPEK-NGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVET----- 233

Query: 655 PQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQI--HTFLSGDP 712
                  A+L+  + + G+ +  E++   M               VKN +  ++ ++G  
Sbjct: 234 -------AMLTG-YMKFGKVELAERIFQRM--------------AVKNLVTWNSMIAGYV 271

Query: 713 KQCRTAEICNTLKTL-AAQIRNTPLAV 738
           + CR  +     KT+  +++R  PL++
Sbjct: 272 ENCRAEDGLKVFKTMIESRVRPNPLSL 298


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 225/749 (30%), Positives = 396/749 (52%), Gaps = 66/749 (8%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N ++ +  +SG +E A+K+   +S K  +   ++ S         D++ L +    
Sbjct: 61  VTDANTQLRRFCESGNLENAVKLLC-VSGKWDIDPRTLCSVLQ---LCADSKSLKDGKEV 116

Query: 75  RNLVSWNSMIAG----------YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGEL 124
            N +  N  +            Y +   +KEA  +FD++       W +++    + G+ 
Sbjct: 117 DNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDF 176

Query: 125 EKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLL-----DAMPSKNIVSWNS 176
             +  LF  + +   + D+  ++ +   ++ + + +  ++L           +N V  NS
Sbjct: 177 SGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVG-NS 235

Query: 177 MLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI----PEQN 232
           +++ Y KN  +  A K F+ M ERDV+SWN +++GYV     +     F ++     E +
Sbjct: 236 LVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEID 295

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA-----WNAMIAAYVQRGQIEEAARLF 287
           + + V++ +G A + R++   R    + ++   +      N ++  Y + G ++ A  +F
Sbjct: 296 LATIVSVFAGCA-DSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVF 354

Query: 288 IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMD 343
            EM +R+ VS+T+MI GY R     EA +L ++M  + I+      TA+++   + + +D
Sbjct: 355 REMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLD 414

Query: 344 EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQ 403
           E  ++ + I  +D+        G+                   DI   N ++  YA+   
Sbjct: 415 EGKRVHEWIKENDL--------GF-------------------DIFVSNALMDMYAKCGS 447

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK-KADHSTLACAL 462
           M +A  +F EM + ++ +SWN +I G+ +N +  +AL +F L+ +E +   D  T+AC L
Sbjct: 448 MQEAELVFSEM-RVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVL 506

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
            ACA L+A   GR+IH   +++GY +D  V NSL+ MYAKCG +  A +LF D    D++
Sbjct: 507 PACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLV 566

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           SW  +IAGY ++G   EAI LF +M   G+  D ++F+ +L ACSH GLVD G + F  M
Sbjct: 567 SWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIM 626

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKL 642
                IEP VEHYAC++D+L+R G L +A+  ++ M I P+A IWG LL  CR+H ++KL
Sbjct: 627 RHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKL 686

Query: 643 GRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKN 702
                EK+ ELEP+ T  Y L++N++AEA +W++V+++R  +   G +K PGCSWIE+K 
Sbjct: 687 AEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKG 746

Query: 703 QIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           +++ F++GD     T  I   L+ + A++
Sbjct: 747 RVNIFVAGDSSNPETENIEAFLRKVRARM 775



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 140/331 (42%), Gaps = 42/331 (12%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G  +F  N  +    K G ++EA  +FS+M  K+ +++N++I  Y+KN   N+A  LF  
Sbjct: 429 GFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLF-- 486

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
               NL+                    L +K F PD  + A ++         +K RE+ 
Sbjct: 487 ----NLL--------------------LEEKRFSPDERTVACVLPACASLSAFDKGREIH 522

Query: 132 DLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
             +       D    N++V  YAK G    A  L D + SK++VSW  M++GY  +G   
Sbjct: 523 GYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGK 582

Query: 189 LASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-----EQNVVSWVTM 239
            A   F  M     E D +S+  +L        +D  W+FF  +      E  V  +  +
Sbjct: 583 EAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACI 642

Query: 240 LSGYARNGRMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNP 295
           +   AR G +++A R  + MPI  +   W A++        +   E+ A    E+   N 
Sbjct: 643 VDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENT 702

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
             +  M + Y    K ++ +RL  ++  + +
Sbjct: 703 GYYVLMANIYAEAEKWEQVKRLRKRIGQRGL 733



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 9/174 (5%)

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK-KADHSTLACALSA 464
           D++  F+      NT       SG L+N     A+K   L+   GK   D  TL   L  
Sbjct: 52  DSITTFDRSVTDANTQLRRFCESGNLEN-----AVK---LLCVSGKWDIDPRTLCSVLQL 103

Query: 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
           CA   +L+ G+++ +    +G+V D  +G+ L  MY  CG ++ A  +F +      + W
Sbjct: 104 CADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFW 163

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
           N L+   A +G+ + +I LF++M+  GV  D  TF  V  + S +  V GG +L
Sbjct: 164 NILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQL 217


>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
          Length = 1974

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 227/725 (31%), Positives = 378/725 (52%), Gaps = 42/725 (5%)

Query: 44   KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIA-----GYLHNDKVKEARE 98
            KN      ++  YAK      A +LF ++  RN+ SW +++      G+   D +    E
Sbjct: 1209 KNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGF-SEDALLGFIE 1267

Query: 99   LFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACW---NAMVAGYAKIGN 155
            + +    PD F    ++        +   + +   +      AC    +++V  Y K G 
Sbjct: 1268 MQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGV 1327

Query: 156  YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDG 211
              +A+K+ D+M  KN+V+WNSM+ GY +NG    A   F  M     E   V+    L  
Sbjct: 1328 LEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSA 1387

Query: 212  YVELDDL-----DSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA 266
               LD L       A      +   N++   ++++ Y++ G + +A  +F +M  ++VV 
Sbjct: 1388 SANLDALIEGKQGHAIAILNSLDLDNILG-SSIINFYSKVGLIEDAELVFSRMLEKDVVT 1446

Query: 267  WNAMIAAYVQRGQIEEAARLFIEMPERN----PVSWTTMIDGY-----VRIAKLDEA--- 314
            WN +I++YVQ  Q+ +A  +   M   N     V+ ++++        +++ K       
Sbjct: 1447 WNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSSILSASAVTSNIKLGKEGHCYCI 1506

Query: 315  RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMD 374
            RR L+     ++    ++I  Y + +R+D+A ++FD     D+V WN ++  YAQ G   
Sbjct: 1507 RRNLES----DVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSG 1562

Query: 375  EAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALI 427
            EA+ LF QM    V  ++++WN++I G+ +  Q+++A  +F +M   G + N ++W  LI
Sbjct: 1563 EALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLI 1622

Query: 428  SGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV 487
            SG  Q+ F  +A+  F  M + G +   +++   L AC  + +L  GR IH    +  + 
Sbjct: 1623 SGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFC 1682

Query: 488  NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
              + V  SL+ MYAKCG I  A+ +F      ++  +N++I+ YA++G A EA+ LF+ +
Sbjct: 1683 LSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHL 1742

Query: 548  VMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGR 607
              EG+ PD +TF  +LSACSH GLV+ GL LF  M   + + P++EHY C++ LLSR G 
Sbjct: 1743 QKEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGN 1802

Query: 608  LDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNM 667
            LDEA  ++  M  +P+A I G+LL ACR H  I+LG    + L +LEP  +  Y  LSN 
Sbjct: 1803 LDEALRLILTMPFQPDAHILGSLLTACREHHEIELGEYLSKHLFKLEPSNSGNYVALSNA 1862

Query: 668  HAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
            +A AGRW EV  +R  M+  G +K PGCSWI+   +++ F++GD    +T EI   L  L
Sbjct: 1863 YAAAGRWVEVSNMRDLMKVRGLRKNPGCSWIQTGGKLNVFVAGDGSHPKTEEIYAMLAML 1922

Query: 728  AAQIR 732
             +++R
Sbjct: 1923 LSEMR 1927



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 149/591 (25%), Positives = 274/591 (46%), Gaps = 57/591 (9%)

Query: 12   GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
            G+ VF  +  +   GK G +E+A K+F  M +KN VT+NSMI  Y +NG   +A  +F  
Sbjct: 1309 GACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYD 1368

Query: 72   M------PQRNLVSWNSMIAGYLHNDKVKEARE-----LFDKMFRPDLFSWALMITCYTR 120
            M      P R  V+  S ++   + D + E ++     + + +   ++   ++ I  Y++
Sbjct: 1369 MRVEGIEPTR--VTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGSSI-INFYSK 1425

Query: 121  KGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNS 176
             G +E A  +F  +  K D   WN +++ Y +     +A  +   M S+N+    V+ +S
Sbjct: 1426 VGLIEDAELVFSRMLEK-DVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRFDSVTLSS 1484

Query: 177  MLSGYTKNGEMHLASK----FFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQN 232
            +LS       + L  +          E DVV  N ++D Y + + +D A K F    E++
Sbjct: 1485 ILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERD 1544

Query: 233  VVSWVTMLSGYARNGRMLEARRLFDQMPI----RNVVAWNAMIAAYVQRGQIEEAARLFI 288
            +V W T+L+ YA+ G   EA +LF QM       NV++WN++I  +++ GQ+ EA  +F 
Sbjct: 1545 LVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFS 1604

Query: 289  EMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMP----YKNIAAQTAMISGYVQNK 340
            +M     + N ++WTT+I G  +     EA     +M       +IA+ T+++       
Sbjct: 1605 QMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIP 1664

Query: 341  RMDEANQIFDKIGTHDVVCWNV-----MIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMI 395
             +     I   I  H+  C +V     ++  YA+CG +DEA  +F  M +K++  +N MI
Sbjct: 1665 SLWYGRAIHGFITRHE-FCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMI 1723

Query: 396  AGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK- 451
            + YA   Q  +A+ +F+ +   G   +++++ +++S         + L +F  M  +   
Sbjct: 1724 SAYALHGQAVEALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNM 1783

Query: 452  ---KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
                  +  +   LS C +L       +   L +   +  D  +  SL+T   +   I+ 
Sbjct: 1784 NPIMEHYGCVVSLLSRCGNL------DEALRLILTMPFQPDAHILGSLLTACREHHEIEL 1837

Query: 509  AELLFKD---ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
             E L K     +P +  ++ +L   YA  G   E   + + M + G+  +P
Sbjct: 1838 GEYLSKHLFKLEPSNSGNYVALSNAYAAAGRWVEVSNMRDLMKVRGLRKNP 1888



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 148/335 (44%), Gaps = 82/335 (24%)

Query: 10   NKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLF 69
            N  S V   N  I    K  R+++A K+F   ++++ V +N++++AYA+ G   +A KLF
Sbjct: 1509 NLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLF 1568

Query: 70   EQMP----QRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRK 121
             QM       N++SWNS+I G+L N +V EA+++F +M    F+P+L +W  +I+   + 
Sbjct: 1569 YQMQFDSVPPNVISWNSVILGFLRNGQVNEAKDMFSQMQSLGFQPNLITWTTLISGLAQS 1628

Query: 122  GELEKARELFD-----------------LLPNKEDTACW--------------------- 143
            G   +A   F                  LL   +  + W                     
Sbjct: 1629 GFGYEAILFFQKMQEAGIRPSIASITSVLLACTDIPSLWYGRAIHGFITRHEFCLSVPVA 1688

Query: 144  NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
             ++V  YAK G+ +EAKK+   M SK +  +N+M+S Y  +G+   A   F+ +++  + 
Sbjct: 1689 TSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYALHGQAVEALALFKHLQKEGI- 1747

Query: 204  SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM---- 259
                                      E + +++ ++LS  +  G + E   LF  M    
Sbjct: 1748 --------------------------EPDSITFTSILSACSHAGLVNEGLNLFADMVSKH 1781

Query: 260  ---PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
               PI     +  +++   + G ++EA RL + MP
Sbjct: 1782 NMNPIME--HYGCVVSLLSRCGNLDEALRLILTMP 1814



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 4/172 (2%)

Query: 462  LSACAHLAALQLGRQIHHLAIKSG--YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
            L  C +  AL  G+QIH   +K+G  +  + +V   L+  YAKC   + A  LF      
Sbjct: 1181 LQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVR 1240

Query: 520  DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
            +V SW +++      G + +A+  F EM   GV PD      VL AC  + L+  G  + 
Sbjct: 1241 NVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVH 1300

Query: 580  ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
              + ++      V   + ++D+  + G L++A ++   M ++ N   W +++
Sbjct: 1301 GYVLKM-GFGACVFVSSSLVDMYGKCGVLEDARKVFDSM-VEKNVVTWNSMI 1350


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 233/806 (28%), Positives = 400/806 (49%), Gaps = 134/806 (16%)

Query: 26  GKSGRVEEAIKIFSQMSQKNTVTYNS------MISAYAKNGRVNDARKLFEQMPQRNLVS 79
           G    + E  ++ + M   N + +NS      ++  Y K G + DA KLF+ MP + + +
Sbjct: 89  GSKKALSEGQQVHAHMITSNAL-FNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFT 147

Query: 80  WNSMIAGYLHNDKVKEARELF--------------------------DKMFRPDLFSWAL 113
           WN+MI  Y+ N +   + EL+                          D+ +  ++   A+
Sbjct: 148 WNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAI 207

Query: 114 -------------MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
                        ++  YT+  +L  AR+LFD +P KED   WN+M++ Y+  G   EA 
Sbjct: 208 KEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEAL 267

Query: 161 KLLDAM------PSK---------------------------------NIVSWNSMLSGY 181
           +L   M      P+                                  N+   N++++ Y
Sbjct: 268 RLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMY 327

Query: 182 TKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPE----QNVVSWV 237
            + G+M  A+  F  M++ D +SWN ML G+V+      A +F+ ++ +     ++V+ +
Sbjct: 328 ARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVI 387

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRN-----VVAWNAMIAAYVQRGQIEEAARLFIEMPE 292
           ++++  AR+G  L   ++     ++N     +   N+++  Y +   ++    +F +MP+
Sbjct: 388 SIIAASARSGNTLHGMQI-HAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPD 446

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMI-------SGYVQNKRMDEA 345
           ++ VSWTT+I G+ +      A  L  ++  + I     MI       SG      + E 
Sbjct: 447 KDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEI 506

Query: 346 NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMD 405
           +    + G  D+V  N ++  Y +CG +D A  +F  +  KD+V+W +MI+ Y       
Sbjct: 507 HSYIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCY------- 559

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
                                    + N    +AL++F LM + G + D  +L   LSA 
Sbjct: 560 -------------------------VHNGLANEALELFHLMKETGVEPDSISLVSILSAA 594

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
           A L+AL+ G++IH   I+ G+V +  + ++L+ MYA+CG ++ +  +F      D++ W 
Sbjct: 595 ASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWT 654

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
           S+I  Y ++G    AI LF  M  E +APD + F+ VL ACSH GL++ G +  E M   
Sbjct: 655 SMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYE 714

Query: 586 YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI 645
           Y +EP  EHYAC++DLL RA  L+EA++ VKGM+++P A +W  LLGAC++H N +LG I
Sbjct: 715 YQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEI 774

Query: 646 AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705
           A +KL E++P+    Y L+SN+++   RW +VE VR+ M+ SG +K PGCSWIEV N++H
Sbjct: 775 AAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVGNKVH 834

Query: 706 TFLSGDPKQCRTAEICNTLKTLAAQI 731
           TF++ D    ++ EI + L  +  ++
Sbjct: 835 TFMARDKSHPQSYEIYSKLSQITEKL 860



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 121/528 (22%), Positives = 228/528 (43%), Gaps = 96/528 (18%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQK-NTVTYNSMISAYAKNGRVNDARKLFEQ 71
           S VF  N  +    K   +  A ++F +M +K + V++NSMISAY+ NG+  +A +LF +
Sbjct: 213 SIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGE 272

Query: 72  MPQRNLVSWNSMIAGYLH----NDKVKEARELFDKMFRP----DLFSWALMITCYTRKGE 123
           M + +L          L     +  +K+   +   + +     ++F    +I  Y R G+
Sbjct: 273 MQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGK 332

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA----KKLLDAMPSKNIVSWNSMLS 179
           + +A  +F  + +  DT  WN+M++G+ + G Y+EA     ++ DA    ++V+  S+++
Sbjct: 333 MGEAANIFYNM-DDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIA 391

Query: 180 GYTKNGE-MHLASKFFEAME---ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
              ++G  +H       AM+   + D+   N ++D Y +   +      F K+P+++VVS
Sbjct: 392 ASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVS 451

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR-------GQIEEAARLFI 288
           W T+++G+A+NG    A  LF ++ +  +     MI++ +           ++E     I
Sbjct: 452 WTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYII 511

Query: 289 EMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQI 348
                + V    ++D Y     +D A R+ + + +K++ + T+MIS YV N   +EA ++
Sbjct: 512 RKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALEL 571

Query: 349 F----------DKIGTHDVVCW-----------------------------NVMIKGYAQ 369
           F          D I    ++                               + ++  YA+
Sbjct: 572 FHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYAR 631

Query: 370 CGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
           CG ++++ N+F  + NKD+V W +MI  Y        A+ +F     RR           
Sbjct: 632 CGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLF-----RR----------- 675

Query: 430 FLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI 477
                           M  E    DH      L AC+H   +  GR+ 
Sbjct: 676 ----------------MEDESIAPDHIAFVAVLYACSHSGLMNEGRRF 707



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 1/106 (0%)

Query: 462 LSACAHLAALQLGRQIH-HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVD 520
           L  C    AL  G+Q+H H+   +   N +F+   L+ MY KCG + +AE LF       
Sbjct: 85  LELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKT 144

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
           + +WN++I  Y  NG    +++L+ EM + G+  D  TF  +L AC
Sbjct: 145 IFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKAC 190



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 114/241 (47%), Gaps = 19/241 (7%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           QN  +   G+ G V+ A ++F  +  K+ V++ SMIS Y  NG  N+A +LF  M +  +
Sbjct: 521 QNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGV 580

Query: 78  ----VSWNSMIAGYLHNDKVKEARELFDKMFRPDLF----SWALMITCYTRKGELEKARE 129
               +S  S+++       +K+ +E+   + R          + ++  Y R G LEK+R 
Sbjct: 581 EPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRN 640

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNG 185
           +F+ + NK D   W +M+  Y   G    A  L   M  ++I    +++ ++L   + +G
Sbjct: 641 VFNFIRNK-DLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSG 699

Query: 186 EMHLASKFFEAME-ERDVVSWNLMLDGYVEL----DDLDSAWKFFQKIP-EQNVVSWVTM 239
            M+   +F E+M+ E  +  W       V+L    + L+ A++F + +  E     W  +
Sbjct: 700 LMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCAL 759

Query: 240 L 240
           L
Sbjct: 760 L 760


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 218/643 (33%), Positives = 340/643 (52%), Gaps = 55/643 (8%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME--ERD 201
           N ++  Y K    N A++L D +   + ++  +M+SGY  +G++ LA   FE      RD
Sbjct: 53  NRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRD 112

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFD 257
            V +N M+ G+   +D  SA   F K+  +       ++ ++L+G A      +    F 
Sbjct: 113 TVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFH 172

Query: 258 QMPIRNVVAW-----NAMIAAYVQRGQ----IEEAARLFIEMPERNPVSWTTMIDGYVRI 308
              +++   +     NA+++ Y +       +  A ++F E+ E++  SWTTM+ GYV+ 
Sbjct: 173 AAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKN 232

Query: 309 AKLDEARRLLDQMPYK-NIAAQTAMISGYVQN----------KRMDEANQIFDKIGTHDV 357
              D    LL+ M     + A  AMISGYV            +RM  +    D+     V
Sbjct: 233 GYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSV 292

Query: 358 V--CW--------------------------NVMIKGYAQCGRMDEAINLFRQMVNKDIV 389
           +  C                           N ++  Y +CG+ DEA  +F +M  KD+V
Sbjct: 293 IRACATAGLLQLGKQVHAYVLRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLV 352

Query: 390 TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
           +WN +++GY     + +A  IF+EM K +N +SW  +ISG  +N F  + LK+F  M +E
Sbjct: 353 SWNALLSGYVSSGHIGEAKLIFKEM-KEKNILSWMIMISGLAENGFGEEGLKLFSCMKRE 411

Query: 450 GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA 509
           G +      + A+ +CA L A   G+Q H   +K G+ + L  GN+LITMYAKCG ++ A
Sbjct: 412 GFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEA 471

Query: 510 ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
             +F+    +D +SWN+LIA    +G+  EA+ ++EEM+ +G+ PD +T + VL+ACSH 
Sbjct: 472 RQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHA 531

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629
           GLVD G K F+ M  VY I P  +HYA +IDLL R+G+  +A  +++ +  KP A IW  
Sbjct: 532 GLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEA 591

Query: 630 LLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689
           LL  CR+H N++LG IA +KL  L P+    Y LLSNMHA  G+W+EV +VR  M   G 
Sbjct: 592 LLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGV 651

Query: 690 QKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +K+  CSWIE++ Q+HTFL  D        +   L+ L  ++R
Sbjct: 652 KKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMR 694



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 156/590 (26%), Positives = 268/590 (45%), Gaps = 113/590 (19%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP--QRN 76
           N+ I    KS  +  A ++F ++S+ + +   +M+S Y  +G +  AR +FE+ P   R+
Sbjct: 53  NRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRD 112

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFD 132
            V +N+MI G+ HN+    A  LF KM    F+PD F++A ++       + EK    F 
Sbjct: 113 TVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFH 172

Query: 133 LLPNKED----TACWNAMVAGYAKIGN----YNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
               K      T+  NA+V+ Y+K  +     + A+K+ D +  K+  SW +M++GY KN
Sbjct: 173 AAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKN 232

Query: 185 GEMHLASKFFEAMEER-DVVSWNLMLDGYVELDDLDSAWKFFQKIPE------------- 230
           G   L  +  E M++   +V++N M+ GYV       A +  +++               
Sbjct: 233 GYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSV 292

Query: 231 -------------QNVVSWV------------TMLSGYARNGRMLEARRLFDQMPIRNVV 265
                        + V ++V            +++S Y + G+  EAR +F++MP +++V
Sbjct: 293 IRACATAGLLQLGKQVHAYVLRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLV 352

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           +WNA+++ YV  G I EA  +F EM E+N +SW  MI G       +E  +L   M  + 
Sbjct: 353 SWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREG 412

Query: 326 I---------AAQTAMISGYVQNKRMDEANQIFDKIG-THDVVCWNVMIKGYAQCGRMDE 375
                     A ++  + G   N +   A  +  KIG    +   N +I  YA+CG ++E
Sbjct: 413 FEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLL--KIGFDSSLSAGNALITMYAKCGVVEE 470

Query: 376 AINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEF 435
           A  +FR M   D V+WN +IA   Q     +AV ++EEM K+                  
Sbjct: 471 ARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKK------------------ 512

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV----NDLF 491
                         G + D  TL   L+AC+H   +  GR+ +  ++++ Y      D +
Sbjct: 513 --------------GIRPDRITLLTVLTACSHAGLVDQGRK-YFDSMETVYRIPPGADHY 557

Query: 492 VGNSLITMYAKCGRIQNAE-----LLFKDADPVDVISWNSLIAGYAINGN 536
               LI +  + G+  +AE     L FK    +    W +L++G  ++GN
Sbjct: 558 A--RLIDLLCRSGKFSDAESVIESLPFKPTAEI----WEALLSGCRVHGN 601



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 148/304 (48%), Gaps = 24/304 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S+ F+ N  ++   K G+ +EA  IF +M  K+ V++N+++S Y  +G + +A+ +F++M
Sbjct: 319 SFHFD-NSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEM 377

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMI-TCYTRKGELEKA 127
            ++N++SW  MI+G   N   +E  +LF  M    F P  ++++  I +C          
Sbjct: 378 KEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQ 437

Query: 128 RELFDLLPNKEDT--ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
           +    LL    D+  +  NA++  YAK G   EA+++   MP  + VSWN++++   ++G
Sbjct: 438 QYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHG 497

Query: 186 EMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQ------KIPEQNVVS 235
               A   +E M ++    D ++   +L        +D   K+F       +IP      
Sbjct: 498 HGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIP-PGADH 556

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIRNVVA-WNAMIAAYVQRGQIE----EAARLFIEM 290
           +  ++    R+G+  +A  + + +P +     W A+++     G +E     A +LF  +
Sbjct: 557 YARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLI 616

Query: 291 PERN 294
           PE +
Sbjct: 617 PEHD 620



 Score = 46.6 bits (109), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 52/133 (39%), Gaps = 33/133 (24%)

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
           +LQL R +H   I  G+     + N LI +Y K   +  A  LF +    D I+  ++++
Sbjct: 29  SLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVS 88

Query: 530 GYAINGNAT---------------------------------EAIKLFEEMVMEGVAPDP 556
           GY  +G+ T                                  AI LF +M  EG  PD 
Sbjct: 89  GYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDN 148

Query: 557 VTFIGVLSACSHV 569
            TF  VL+  + V
Sbjct: 149 FTFASVLAGLALV 161


>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
 gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 903

 Score =  370 bits (951), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 230/778 (29%), Positives = 397/778 (51%), Gaps = 83/778 (10%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           +F +M  ++ V++N MI+ Y+K+  +  A   F  MP R++VSWNSM++GYL N +  ++
Sbjct: 105 VFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKS 164

Query: 97  RELFDKMFRPDL------FSWALMITCYTRKGELE-KARELFDLLPNKEDTACWNAMVAG 149
            E+F  M R  +      F+  L +  +     L  +   +   +    D    +A++  
Sbjct: 165 IEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDM 224

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV-VSWNL- 207
           YAK   + E+ ++   +P KN VSW+++++G  +N  + LA KFF+ M++ +  VS ++ 
Sbjct: 225 YAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIY 284

Query: 208 --MLDGYVELDDLD-----SAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
             +L     L +L       A           +V   T L  YA+   M +A+ LFD   
Sbjct: 285 ASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTAT-LDMYAKCDNMQDAQILFDNSE 343

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARR 316
             N  ++NAMI  Y Q     +A  LF  +       + +S + +      +  L E  +
Sbjct: 344 NLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQ 403

Query: 317 L----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGR 372
           +    +      ++    A I  Y + + + EA ++FD++   D V WN +I  + Q G+
Sbjct: 404 IYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGK 463

Query: 373 MDEAINLF----RQMVNKDIVTWNTMIAG------------------------------- 397
             E + LF    R  +  D  T+ +++                                 
Sbjct: 464 GYETLFLFVSMLRSRIEPDEFTFGSILKACTGGSLGYGMEIHSSIVKSGMASNSSVGCSL 523

Query: 398 ---YAQIRQMDDAVKIFEEMGKRRNT-------------------VSWNALISGFLQNEF 435
              Y++   +++A KI     +R N                    VSWN++ISG++  E 
Sbjct: 524 IDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQ 583

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS 495
             DA  +F  M + G   D  T A  L  CA+LA+  LG+QIH   IK    +D+++ ++
Sbjct: 584 SEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICST 643

Query: 496 LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555
           L+ MY+KCG + ++ L+F+ +   D ++WN++I GYA +G   EAI+LFE M++E + P+
Sbjct: 644 LVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPN 703

Query: 556 PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV 615
            VTFI +L AC+H+GL+D GL+ F  M   Y ++P + HY+ M+D+L ++G++  A E++
Sbjct: 704 HVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELI 763

Query: 616 KGMKIKPNAGIWGTLLGACRMHQ-NIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRW 674
           + M  + +  IW TLLG C +H+ N+++   A   L  L+PQ +S Y LLSN++A+AG W
Sbjct: 764 REMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMW 823

Query: 675 DEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           ++V  +R +M G   +K+PGCSW+E+K+++H FL GD    R  EI   L  + ++++
Sbjct: 824 EKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEELGLIYSEMK 881



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 169/637 (26%), Positives = 277/637 (43%), Gaps = 141/637 (22%)

Query: 137 KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEA 196
           +  T   N ++  Y    ++  A  + D MP +++VSWN M++GY+K+ +M  A+ FF  
Sbjct: 80  RPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNM 139

Query: 197 MEERDVVSWNLMLDGY--------------------VELDDLDSA-----WKFFQKIP-- 229
           M  RDVVSWN ML GY                    +E D    A       F +     
Sbjct: 140 MPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLG 199

Query: 230 ------------EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR 277
                       + +VV+   +L  YA+  R +E+ R+F  +P +N V+W+A+IA  VQ 
Sbjct: 200 MQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQN 259

Query: 278 GQIEEAARLFIEMPERNP-VSWTTM-----------------------------IDGYVR 307
             +  A + F EM + N  VS +                                DG VR
Sbjct: 260 NLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVR 319

Query: 308 IAKLD---------EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT---- 354
            A LD         +A+ L D     N  +  AMI+GY Q +   +A  +F ++ +    
Sbjct: 320 TATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLG 379

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLF----RQMVNKDIVTWNTMIAGYAQIRQMDDAVKI 410
            D +  + + +  A    + E + ++    +  ++ D+   N  I  Y + + + +A ++
Sbjct: 380 FDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRV 439

Query: 411 FEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAA 470
           F+EM +RR+ VSWNA+I+   QN    + L +FV M +   + D  T    L AC    +
Sbjct: 440 FDEM-RRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-GS 497

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL----FKDADPVDV----- 521
           L  G +IH   +KSG  ++  VG SLI MY+KCG I+ AE +    F+ A+         
Sbjct: 498 LGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELE 557

Query: 522 -----------ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
                      +SWNS+I+GY +   + +A  LF  M+  G+ PD  T+  VL  C+++ 
Sbjct: 558 KMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLA 617

Query: 571 LVDGGLKLF------ECMTEVYAIEPLVEHYA------------------------CMID 600
               G ++       E  ++VY    LV+ Y+                         MI 
Sbjct: 618 SAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMIC 677

Query: 601 LLSRAGRLDEAFEMVKGM---KIKPNAGIWGTLLGAC 634
             +  G+ +EA ++ + M    IKPN   + ++L AC
Sbjct: 678 GYAHHGKGEEAIQLFERMILENIKPNHVTFISILRAC 714



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 136/549 (24%), Positives = 249/549 (45%), Gaps = 57/549 (10%)

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSW 205
           Y ++ +++     L+ + S +  +++ +     K G + L  +    M            
Sbjct: 27  YRRVPSFSYFTDFLNQVNSVSTTNFSFVFKECAKQGALELGKQAHAHMIISGFRPTTFVL 86

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
           N +L  Y    D  SA   F K+P ++VVSW  M++GY+++  M +A   F+ MP+R+VV
Sbjct: 87  NCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVV 146

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMP---------------------------------- 291
           +WN+M++ Y+Q G+  ++  +F++M                                   
Sbjct: 147 SWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIV 206

Query: 292 -----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEAN 346
                + + V+ + ++D Y +  +  E+ R+   +P KN  + +A+I+G VQN  +  A 
Sbjct: 207 VRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLAL 266

Query: 347 QIFDKIGTHDV-VCWNVMIKGYAQCGRMDE-------AINLFRQMVNKDIVTWNTMIAGY 398
           + F ++   +  V  ++       C  + E         +  +     D +     +  Y
Sbjct: 267 KFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMY 326

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           A+   M DA  +F+   +  N  S+NA+I+G+ Q E    AL +F  +   G   D  +L
Sbjct: 327 AKCDNMQDAQILFDN-SENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISL 385

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
           +    ACA +  L  G QI+ LAIKS    D+ V N+ I MY KC  +  A  +F +   
Sbjct: 386 SGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRR 445

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
            D +SWN++IA +  NG   E + LF  M+   + PD  TF  +L AC+  G +  G+++
Sbjct: 446 RDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEI 504

Query: 579 FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQ 638
              + +   +         +ID+ S+ G ++EA ++    +    A + GT+    +MH 
Sbjct: 505 HSSIVKS-GMASNSSVGCSLIDMYSKCGMIEEAEKIHS--RFFQRANVSGTMEELEKMH- 560

Query: 639 NIKLGRIAV 647
           N +L  + V
Sbjct: 561 NKRLQEMCV 569



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 115/453 (25%), Positives = 226/453 (49%), Gaps = 26/453 (5%)

Query: 200 RDVVSWNLMLD---GYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF 256
           R VVS+N  L     Y  +        F  ++   +  ++  +    A+ G +   ++  
Sbjct: 12  RSVVSFNRCLTEKISYRRVPSFSYFTDFLNQVNSVSTTNFSFVFKECAKQGALELGKQAH 71

Query: 257 DQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLD 312
             M I          N ++  Y        A+ +F +MP R+ VSW  MI+GY +   + 
Sbjct: 72  AHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSKSNDMF 131

Query: 313 EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIK--G 366
           +A    + MP +++ +  +M+SGY+QN    ++ ++F  +G      D   + +++K   
Sbjct: 132 KANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCS 191

Query: 367 YAQCGRMDEAIN--LFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
           + +   +   I+  + R   + D+V  + ++  YA+ ++  +++++F+ +   +N+VSW+
Sbjct: 192 FLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGI-PEKNSVSWS 250

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
           A+I+G +QN     ALK F  M +       S  A  L +CA L+ L+LG Q+H  A+KS
Sbjct: 251 AIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKS 310

Query: 485 GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLF 544
            +  D  V  + + MYAKC  +Q+A++LF +++ ++  S+N++I GY+   +  +A+ LF
Sbjct: 311 DFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLF 370

Query: 545 EEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACM----ID 600
             ++  G+  D ++  GV  AC+ V  +  GL+++       AI+  +    C+    ID
Sbjct: 371 HRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYG-----LAIKSSLSLDVCVANAAID 425

Query: 601 LLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
           +  +   L EAF +   M+ + +A  W  ++ A
Sbjct: 426 MYGKCQALAEAFRVFDEMR-RRDAVSWNAIIAA 457


>gi|5803274|dbj|BAA83584.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|55296350|dbj|BAD68395.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|125596022|gb|EAZ35802.1| hypothetical protein OsJ_20095 [Oryza sativa Japonica Group]
          Length = 763

 Score =  370 bits (951), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 215/727 (29%), Positives = 369/727 (50%), Gaps = 80/727 (11%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIA----GYLHNDKVKEARELFDKMFR 105
           N +++ + + GR+  AR++F+ MP+R++VSWN+++A       H   V    E+  + FR
Sbjct: 39  NRLMAEHLRAGRLEAAREVFDGMPRRDVVSWNTIMAVQARAGSHGRAVGAFLEMRRQGFR 98

Query: 106 PD-----------------------------------LFSWALMITCYTRKGELEKAREL 130
           PD                                   +F  A +IT Y   G +    ++
Sbjct: 99  PDHTSFSTALSACARLEALEMGRCVHGLVFKSCSSGNVFVGASLITMYANCGVVSCLEQV 158

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
            D + +  + A WNA+++G         A+K  D MP +N+VSW +M+ G+    E+ +A
Sbjct: 159 LDGVESP-NVALWNALISGLVMNHRVGYARKAFDRMPVRNVVSWTAMIKGHFTAHEVDMA 217

Query: 191 SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSGYA-- 244
            + F+ M  ++ VSW +M+ G+V  +    A + F  +     E   V  V +++ +A  
Sbjct: 218 FQLFKLMPVKNSVSWCVMIGGFVTHEKFSEAVELFNSLMMNGEEVTNVILVKIVNAFAGM 277

Query: 245 ---RNGRML------------------------------EARRLFDQMPIRNVVAWNAMI 271
              R GR +                              EAR  FD+M   +V +WNAM+
Sbjct: 278 KSIRGGRCIHGLAVKSGFAYDLVLEASLVLMYCKSLDITEARLEFDKMEGNHVGSWNAML 337

Query: 272 AAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
             Y+   +I+EA +LF  M  R+ +SW +MI+GY+   ++ +A  L  +M  K++ A TA
Sbjct: 338 CGYIYSDKIDEARKLFDSMNNRDKISWNSMINGYINDGRIADATELYSKMTEKSLEAATA 397

Query: 332 MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTW 391
           ++S ++ N  +D+A  +F  +   DV+    ++ GY + G MD+A++LF  M  + +VT+
Sbjct: 398 LMSWFIDNGMLDKARDMFYNMPQIDVMSCTTLLFGYVKGGHMDDALDLFHMMQKRTVVTY 457

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
           N MI+G     ++ +A K+F E    R++V+W+ L++G   N    +AL+ +  M     
Sbjct: 458 NVMISGLFHQGKITEAYKLFNE-SPTRDSVTWSCLVAGLATNGLIHEALQFYKKMLLSNI 516

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL 511
           +   S ++  +S  ++ + +  G+Q H   IK G  + L + NSLI++Y KCG +  A+ 
Sbjct: 517 RPSESVVSSLISCLSNYSMMVHGQQFHATTIKIGLDSHLLIQNSLISLYCKCGEMIIAQS 576

Query: 512 LFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
           +F      D ++WN++I GYA+N     A+++FE M    V PD +TF+GVLSAC+H+ L
Sbjct: 577 IFDLMAKRDKVTWNTIIHGYALNNLGQNAVEMFESMTKAQVDPDDITFLGVLSACNHMSL 636

Query: 572 VDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           ++     F  MT  Y I P + HYACM+DL  R   + EA  +VK M  +P++ IW +LL
Sbjct: 637 LEEAKYFFNAMTCTYGILPNIMHYACMVDLFCRKCMIKEAEGLVKSMPFEPDSAIWTSLL 696

Query: 632 GACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQK 691
             CR+  N KL   A  +L  ++P     Y  L ++H    +   ++ +R  ++ +  +K
Sbjct: 697 SGCRLTGNDKLAEHAASQLIAIDPCTKMPYLHLISVHGLTNKSTVIDSLRSQIKSTATEK 756

Query: 692 QPGCSWI 698
             G SWI
Sbjct: 757 DVGYSWI 763



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 185/374 (49%), Gaps = 50/374 (13%)

Query: 11  KGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFE 70
           +G++V + N  +     S +++EA K+F  M+ ++ +++NSMI+ Y  +GR+ DA +L+ 
Sbjct: 326 EGNHVGSWNAMLCGYIYSDKIDEARKLFDSMNNRDKISWNSMINGYINDGRIADATELYS 385

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
           +M +++L +  ++++ ++ N  + +AR++F  M + D+ S   ++  Y + G ++ A +L
Sbjct: 386 KMTEKSLEAATALMSWFIDNGMLDKARDMFYNMPQIDVMSCTTLLFGYVKGGHMDDALDL 445

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           F ++  K     +N M++G    G   EA KL +  P+++ V+W+ +++G   NG +H A
Sbjct: 446 FHMM-QKRTVVTYNVMISGLFHQGKITEAYKLFNESPTRDSVTWSCLVAGLATNGLIHEA 504

Query: 191 SKFFEAM------EERDVVS--------WNLMLDG------------------------- 211
            +F++ M          VVS        +++M+ G                         
Sbjct: 505 LQFYKKMLLSNIRPSESVVSSLISCLSNYSMMVHGQQFHATTIKIGLDSHLLIQNSLISL 564

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAW 267
           Y +  ++  A   F  + +++ V+W T++ GYA N     A  +F+ M    V    + +
Sbjct: 565 YCKCGEMIIAQSIFDLMAKRDKVTWNTIIHGYALNNLGQNAVEMFESMTKAQVDPDDITF 624

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPER-----NPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
             +++A      +EEA   F  M        N + +  M+D + R   + EA  L+  MP
Sbjct: 625 LGVLSACNHMSLLEEAKYFFNAMTCTYGILPNIMHYACMVDLFCRKCMIKEAEGLVKSMP 684

Query: 323 YK-NIAAQTAMISG 335
           ++ + A  T+++SG
Sbjct: 685 FEPDSAIWTSLLSG 698


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  370 bits (951), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 233/806 (28%), Positives = 398/806 (49%), Gaps = 134/806 (16%)

Query: 26  GKSGRVEEAIKIFSQMSQKNTVTYNS------MISAYAKNGRVNDARKLFEQMPQRNLVS 79
           G    + E  ++ + M   N + +NS      ++  Y K G + DA KLF+ MP + + +
Sbjct: 125 GSKKALSEGQQVHAHMITSNAL-FNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFT 183

Query: 80  WNSMIAGYLHNDKVKEARELFDKM------------------------------------ 103
           WN+MI  Y+ N +   + EL+ +M                                    
Sbjct: 184 WNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAI 243

Query: 104 ---FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
              +   +F    ++  YT+  +L  AR+LFD +P KED   WN+M++ Y+  G   EA 
Sbjct: 244 KEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEAL 303

Query: 161 KLLDAM------PSK---------------------------------NIVSWNSMLSGY 181
           +L   M      P+                                  N+   N++++ Y
Sbjct: 304 RLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMY 363

Query: 182 TKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPE----QNVVSWV 237
            + G+M  A+  F  M++ D +SWN ML G+V+      A +F+ ++ +     ++V+ +
Sbjct: 364 ARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVI 423

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRN-----VVAWNAMIAAYVQRGQIEEAARLFIEMPE 292
           ++++  AR+G  L   ++     ++N     +   N+++  Y +   ++    +F +MP+
Sbjct: 424 SIIAASARSGNTLNGMQI-HAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPD 482

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMI-------SGYVQNKRMDEA 345
           ++ VSWTT+I G+ +      A  L  ++  + I     MI       SG      + E 
Sbjct: 483 KDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEI 542

Query: 346 NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMD 405
           +    + G  D+V  N ++  Y +CG +D A  +F  +  KD+V+W +MI+ Y       
Sbjct: 543 HSYIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCY------- 595

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
                                    + N    +AL++F LM + G + D  +L   LSA 
Sbjct: 596 -------------------------VHNGLANEALELFHLMKETGVEPDSISLVSILSAA 630

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
           A L+AL+ G++IH   I+ G+V +  + ++L+ MYA+CG ++ +  +F      D++ W 
Sbjct: 631 ASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWT 690

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
           S+I  Y ++G    AI LF  M  E +APD + F+ VL ACSH GL++ G +  E M   
Sbjct: 691 SMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYE 750

Query: 586 YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI 645
           Y +EP  EHY C++DLL RA  L+EA++ VKGM+++P A +W  LLGAC++H N +LG I
Sbjct: 751 YQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEI 810

Query: 646 AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705
           A +KL E++P+    Y L+SN++A   RW +VE+VR+ M+ SG +K PGCSWIEV N++H
Sbjct: 811 AAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGNKVH 870

Query: 706 TFLSGDPKQCRTAEICNTLKTLAAQI 731
           TF++ D    ++ EI + L  +  ++
Sbjct: 871 TFMARDKSHPQSYEIYSKLSQITEKL 896



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 123/529 (23%), Positives = 228/529 (43%), Gaps = 98/529 (18%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQK-NTVTYNSMISAYAKNGRVNDARKLFEQ 71
           S VF  N  +    K   +  A ++F +M +K + V++NSMISAY+ NG+  +A +LF +
Sbjct: 249 SIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGE 308

Query: 72  MPQRNLVSWNSMIAGYLH----NDKVKEARELFDKMFRP----DLFSWALMITCYTRKGE 123
           M + +L          L     +  +K+   +   + +     ++F    +I  Y R G+
Sbjct: 309 MQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGK 368

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA----KKLLDAMPSKNIVSWNSML- 178
           + +A  +F  + +  DT  WN+M++G+ + G Y+EA     ++ DA    ++V+  S++ 
Sbjct: 369 MGEAANIFYNM-DDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIA 427

Query: 179 ----SGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
               SG T NG M + +   +   + D+   N ++D Y +   +      F K+P+++VV
Sbjct: 428 ASARSGNTLNG-MQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVV 486

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR-------GQIEEAARLF 287
           SW T+++G+A+NG    A  LF ++ +  +     MI++ +           ++E     
Sbjct: 487 SWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYI 546

Query: 288 IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347
           I     + V    ++D Y     +D A R+ + + +K++ + T+MIS YV N   +EA +
Sbjct: 547 IRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALE 606

Query: 348 IF----------DKIGTHDVVCW-----------------------------NVMIKGYA 368
           +F          D I    ++                               + ++  YA
Sbjct: 607 LFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYA 666

Query: 369 QCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
           +CG ++++ N+F  + NKD+V W +MI  Y        A+ +F     RR          
Sbjct: 667 RCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLF-----RR---------- 711

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI 477
                            M  E    DH      L AC+H   +  GR+ 
Sbjct: 712 -----------------MEDESIAPDHIAFVAVLYACSHSGLMNEGRRF 743



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 100/442 (22%), Positives = 189/442 (42%), Gaps = 60/442 (13%)

Query: 11  KGSY---VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARK 67
           K SY   VF  N  I    + G++ EA  IF  M   +T+++NSM+S + +NG  ++A +
Sbjct: 346 KSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQ 405

Query: 68  LFEQM----PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYT 119
            + +M     + +LV+  S+IA    +       ++     +     DL     ++  Y 
Sbjct: 406 FYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYA 465

Query: 120 RKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKL----------LDAMPSK 169
           +   ++    +FD +P+K D   W  ++AG+A+ G+++ A +L          LD M   
Sbjct: 466 KFCSMKYMDCIFDKMPDK-DVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMIS 524

Query: 170 NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP 229
           +I+   S L   +   E+H    +       D+V  N ++D Y E  ++D A + F+ I 
Sbjct: 525 SILLACSGLKLISSVKEIH---SYIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIE 581

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIE 289
            ++VVSW +M+S Y  NG   EA  LF  M    V                         
Sbjct: 582 FKDVVSWTSMISCYVHNGLANEALELFHLMKETGV------------------------- 616

Query: 290 MPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEA 345
             E + +S  +++     ++ L + + +   +  K    +    + ++  Y +   ++++
Sbjct: 617 --EPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKS 674

Query: 346 NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQI 401
             +F+ I   D+V W  MI  Y   G    AI+LFR+M    +  D + +  ++   +  
Sbjct: 675 RNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHS 734

Query: 402 RQMDDAVKIFEEMGKRRNTVSW 423
             M++  +  E M        W
Sbjct: 735 GLMNEGRRFLESMKYEYQLEPW 756



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 16/180 (8%)

Query: 462 LSACAHLAALQLGRQIH-HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVD 520
           L  C    AL  G+Q+H H+   +   N +F+   L+ MY KCG + +AE LF       
Sbjct: 121 LELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKT 180

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE 580
           + +WN++I  Y  NG    +++L+ EM + G+  D  TF  +L AC       G LK   
Sbjct: 181 IFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKAC-------GLLKDRR 233

Query: 581 CMTEVYAIEPLVEHYA-------CMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
           C  EV+ +  + E Y         ++ + ++   L+ A ++   M  K +   W +++ A
Sbjct: 234 CGAEVHGL-AIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISA 292


>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
          Length = 861

 Score =  370 bits (951), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 230/778 (29%), Positives = 397/778 (51%), Gaps = 83/778 (10%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           +F +M  ++ V++N MI+ Y+K+  +  A   F  MP R++VSWNSM++GYL N +  ++
Sbjct: 63  VFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKS 122

Query: 97  RELFDKMFRPDL------FSWALMITCYTRKGELE-KARELFDLLPNKEDTACWNAMVAG 149
            E+F  M R  +      F+  L +  +     L  +   +   +    D    +A++  
Sbjct: 123 IEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDM 182

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV-VSWNL- 207
           YAK   + E+ ++   +P KN VSW+++++G  +N  + LA KFF+ M++ +  VS ++ 
Sbjct: 183 YAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIY 242

Query: 208 --MLDGYVELDDLD-----SAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
             +L     L +L       A           +V   T L  YA+   M +A+ LFD   
Sbjct: 243 ASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTAT-LDMYAKCDNMQDAQILFDNSE 301

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARR 316
             N  ++NAMI  Y Q     +A  LF  +       + +S + +      +  L E  +
Sbjct: 302 NLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQ 361

Query: 317 L----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGR 372
           +    +      ++    A I  Y + + + EA ++FD++   D V WN +I  + Q G+
Sbjct: 362 IYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGK 421

Query: 373 MDEAINLF----RQMVNKDIVTWNTMIAG------------------------------- 397
             E + LF    R  +  D  T+ +++                                 
Sbjct: 422 GYETLFLFVSMLRSRIEPDEFTFGSILKACTGGSLGYGMEIHSSIVKSGMASNSSVGCSL 481

Query: 398 ---YAQIRQMDDAVKIFEEMGKRRNT-------------------VSWNALISGFLQNEF 435
              Y++   +++A KI     +R N                    VSWN++ISG++  E 
Sbjct: 482 IDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQ 541

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS 495
             DA  +F  M + G   D  T A  L  CA+LA+  LG+QIH   IK    +D+++ ++
Sbjct: 542 SEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICST 601

Query: 496 LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555
           L+ MY+KCG + ++ L+F+ +   D ++WN++I GYA +G   EAI+LFE M++E + P+
Sbjct: 602 LVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPN 661

Query: 556 PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV 615
            VTFI +L AC+H+GL+D GL+ F  M   Y ++P + HY+ M+D+L ++G++  A E++
Sbjct: 662 HVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELI 721

Query: 616 KGMKIKPNAGIWGTLLGACRMHQ-NIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRW 674
           + M  + +  IW TLLG C +H+ N+++   A   L  L+PQ +S Y LLSN++A+AG W
Sbjct: 722 REMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMW 781

Query: 675 DEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           ++V  +R +M G   +K+PGCSW+E+K+++H FL GD    R  EI   L  + ++++
Sbjct: 782 EKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEELGLIYSEMK 839



 Score =  212 bits (539), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 177/645 (27%), Positives = 288/645 (44%), Gaps = 123/645 (19%)

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           FRP  F    ++  YT   +   A  +FD +P + D   WN M+ GY+K  +  +A    
Sbjct: 37  FRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLR-DVVSWNKMINGYSKSNDMFKANSFF 95

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLD 219
           + MP +++VSWNSMLSGY +NGE   + + F  M     E D  ++ ++L     L+D  
Sbjct: 96  NMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTS 155

Query: 220 SAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
              +    +     + +VV+   +L  YA+  R +E+ R+F  +P +N V+W+A+IA  V
Sbjct: 156 LGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCV 215

Query: 276 QRGQIEEAARLFIEMPERNP-VSWTTM-----------------------------IDGY 305
           Q   +  A + F EM + N  VS +                                DG 
Sbjct: 216 QNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGI 275

Query: 306 VRIAKLD---------EARRLLDQMPYKNIAAQTAMISGYVQNK----------RMDEAN 346
           VR A LD         +A+ L D     N  +  AMI+GY Q +          R+  + 
Sbjct: 276 VRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSG 335

Query: 347 QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF----RQMVNKDIVTWNTMIAGYAQIR 402
             FD+I    V     ++KG      + E + ++    +  ++ D+   N  I  Y + +
Sbjct: 336 LGFDEISLSGVFRACALVKG------LSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQ 389

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
            + +A ++F+EM +RR+ VSWNA+I+   QN    + L +FV M +   + D  T    L
Sbjct: 390 ALAEAFRVFDEM-RRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSIL 448

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL----FKDADP 518
            AC    +L  G +IH   +KSG  ++  VG SLI MY+KCG I+ AE +    F+ A+ 
Sbjct: 449 KACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANV 507

Query: 519 VDV----------------ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
                              +SWNS+I+GY +   + +A  LF  M+  G+ PD  T+  V
Sbjct: 508 SGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATV 567

Query: 563 LSACSHVGLVDGGLKLF------ECMTEVYAIEPLVEHYA-------------------- 596
           L  C+++     G ++       E  ++VY    LV+ Y+                    
Sbjct: 568 LDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDF 627

Query: 597 ----CMIDLLSRAGRLDEAFEMVKGM---KIKPNAGIWGTLLGAC 634
                MI   +  G+ +EA ++ + M    IKPN   + ++L AC
Sbjct: 628 VTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRAC 672



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 129/489 (26%), Positives = 228/489 (46%), Gaps = 53/489 (10%)

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
           N +L  Y    D  SA   F K+P ++VVSW  M++GY+++  M +A   F+ MP+R+VV
Sbjct: 45  NCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVV 104

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMP---------------------------------- 291
           +WN+M++ Y+Q G+  ++  +F++M                                   
Sbjct: 105 SWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIV 164

Query: 292 -----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEAN 346
                + + V+ + ++D Y +  +  E+ R+   +P KN  + +A+I+G VQN  +  A 
Sbjct: 165 VRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLAL 224

Query: 347 QIFDKIGTHDV-VCWNVMIKGYAQCGRMDE-------AINLFRQMVNKDIVTWNTMIAGY 398
           + F ++   +  V  ++       C  + E         +  +     D +     +  Y
Sbjct: 225 KFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMY 284

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           A+   M DA  +F+   +  N  S+NA+I+G+ Q E    AL +F  +   G   D  +L
Sbjct: 285 AKCDNMQDAQILFDN-SENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISL 343

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
           +    ACA +  L  G QI+ LAIKS    D+ V N+ I MY KC  +  A  +F +   
Sbjct: 344 SGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRR 403

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
            D +SWN++IA +  NG   E + LF  M+   + PD  TF  +L AC+  G +  G+++
Sbjct: 404 RDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYGMEI 462

Query: 579 FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQ 638
              + +   +         +ID+ S+ G ++EA ++    +    A + GT+    +MH 
Sbjct: 463 HSSIVKS-GMASNSSVGCSLIDMYSKCGMIEEAEKIHS--RFFQRANVSGTMEELEKMH- 518

Query: 639 NIKLGRIAV 647
           N +L  + V
Sbjct: 519 NKRLQEMCV 527



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 88/207 (42%), Gaps = 45/207 (21%)

Query: 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
           CA   AL+LG+Q H   I SG+    FV N L+ +Y       +A ++F      DV+SW
Sbjct: 16  CAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSW 75

Query: 525 NSLI-------------------------------AGYAINGNATEAIKLFEEMVMEGVA 553
           N +I                               +GY  NG + ++I++F +M  EG+ 
Sbjct: 76  NKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIE 135

Query: 554 PDPVTFIGVLSACSHVGLVDGGLKL------FECMTEVYAIEPLVEHYACMIDLLSRAGR 607
            D  TF  +L  CS +     G+++        C T+V A   L++ YA       +  R
Sbjct: 136 FDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYA-------KGKR 188

Query: 608 LDEAFEMVKGMKIKPNAGIWGTLLGAC 634
             E+  + +G+  K N+  W  ++  C
Sbjct: 189 FVESLRVFQGIPEK-NSVSWSAIIAGC 214


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  370 bits (951), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 222/785 (28%), Positives = 377/785 (48%), Gaps = 158/785 (20%)

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           F P ++    ++  Y +   +  A ++FD +P++ D   WN M+ GYA+IGN   A+ L 
Sbjct: 37  FVPTIYVANCLVQFYCKSSNMNYAFKVFDRMPHR-DVISWNTMIFGYAEIGNMGFAQSLF 95

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME------------------------- 198
           D MP +++VSWNS+LS Y  NG    + + F  M                          
Sbjct: 96  DTMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFSVVLKACSGIEDYG 155

Query: 199 --------------ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYA 244
                         E DVV+ + ++D Y +   LD A++ F+++PE+N+V W  +++GY 
Sbjct: 156 LGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFREMPERNLVCWSAVIAGYV 215

Query: 245 RNGRMLEARRLFDQM----------------------------------PIRNVVAWNAM 270
           +N R +E  +LF  M                                   +++  A++++
Sbjct: 216 QNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSI 275

Query: 271 IAA-----YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVR----------IAKLDEAR 315
           I       Y +  ++ +A ++F  +P     S+  +I GY R             L    
Sbjct: 276 IGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTY 335

Query: 316 RLLDQMPYKNIAAQTAMISGY--------------------VQNKRMD---------EAN 346
              D++         ++I G+                    V N  +D         EA 
Sbjct: 336 LSFDEISLSGALTACSVIKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEAC 395

Query: 347 QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF----RQMVNKDIVTWNTMI---AG-- 397
            IFD +   D V WN +I  + Q   + + ++LF    R  +  D  T+ +++   AG  
Sbjct: 396 TIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQ 455

Query: 398 ------------------------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
                                         Y +   + +A KI + + + + TVSWN++I
Sbjct: 456 ALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRL-EEKTTVSWNSII 514

Query: 428 SGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV 487
           SGF   +   +A + F  M + G   D+ T A  L  CA++A ++LG+QIH   +K    
Sbjct: 515 SGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQIHAQILKLNLH 574

Query: 488 NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
           +D+++ ++L+ MY+KCG +Q++ L+F+     D ++W+++I  YA +G+  +AIKLFEEM
Sbjct: 575 SDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMICAYAYHGHGEQAIKLFEEM 634

Query: 548 VMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGR 607
            +  V P+   FI VL AC+H+G VD GL  F+ M   Y ++P +EHY+CM+DLL R+ +
Sbjct: 635 QLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQIMQSHYGLDPHMEHYSCMVDLLGRSDQ 694

Query: 608 LDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNM 667
           ++EA ++++ M  + +  IW TLL  C+M  N+++   A   L +L+PQ +S Y LL+N+
Sbjct: 695 VNEALKLIESMHFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLANV 754

Query: 668 HAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
           +A  G W EV K+R  M+    +K+PGCSWIEV++++HTFL GD    R+ EI      L
Sbjct: 755 YANVGMWGEVAKIRSIMKNCKLKKEPGCSWIEVRDEVHTFLVGDKAHPRSEEIYEQTHLL 814

Query: 728 AAQIR 732
             +++
Sbjct: 815 VDEMK 819



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 103/485 (21%), Positives = 205/485 (42%), Gaps = 97/485 (20%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL--------- 77
           K  +++ A +IF +M ++N V ++++I+ Y +N R  +  KLF+ M +  +         
Sbjct: 185 KCKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYAS 244

Query: 78  -------------------------VSWNSMIAG-----YLHNDKVKEARELFDKMFRPD 107
                                     +++S+I       Y   D++ +A ++F+ +  P 
Sbjct: 245 VFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPP 304

Query: 108 LFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKL-- 162
             S+  +I  Y R+ +  KA E+F  L       D    +  +   + I  + E  +L  
Sbjct: 305 RQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHG 364

Query: 163 --LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL------------- 207
             +      NI   N++L  Y K G +  A   F+ ME RD VSWN              
Sbjct: 365 LAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVK 424

Query: 208 -------MLDGYVELDD---------------LDSAWKFFQKIPEQNV-VSWVT---MLS 241
                  ML   +E DD               L+   +   +I +  + + W     ++ 
Sbjct: 425 TLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVD 484

Query: 242 GYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV----S 297
            Y + G ++EA ++ D++  +  V+WN++I+ +  + Q E A R F +M E   +    +
Sbjct: 485 MYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFT 544

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIG 353
           + T++D    +A ++  +++  Q+   N+ +     + ++  Y +   M ++  +F+K  
Sbjct: 545 YATVLDVCANMATIELGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTP 604

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVK 409
             D V W+ MI  YA  G  ++AI LF +M    V  +   + +++   A +  +D  + 
Sbjct: 605 KRDYVTWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLH 664

Query: 410 IFEEM 414
            F+ M
Sbjct: 665 YFQIM 669



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 135/286 (47%), Gaps = 22/286 (7%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           +   GK G + EA KI  ++ +K TV++NS+IS ++   +  +A++ F QM +  ++  N
Sbjct: 483 VDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDN 542

Query: 82  SMIAGYL----HNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDL 133
              A  L    +   ++  +++  ++ +     D++  + ++  Y++ G ++ +R +F+ 
Sbjct: 543 FTYATVLDVCANMATIELGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEK 602

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHL 189
            P K D   W+AM+  YA  G+  +A KL + M   N+      + S+L      G +  
Sbjct: 603 TP-KRDYVTWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRACAHMGYVDK 661

Query: 190 ASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSWVTMLSGY 243
              +F+ M+        +  ++ M+D     D ++ A K  + +  E + V W T+LS  
Sbjct: 662 GLHYFQIMQSHYGLDPHMEHYSCMVDLLGRSDQVNEALKLIESMHFEADDVIWRTLLSNC 721

Query: 244 ARNGRMLEARRLFD---QMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
              G +  A + F+   Q+  ++  A+  +   Y   G   E A++
Sbjct: 722 KMQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYANVGMWGEVAKI 767



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 87/209 (41%), Gaps = 35/209 (16%)

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
           T +  L  C++L AL  G+Q H   I + +V  ++V N L+  Y K   +  A  +F   
Sbjct: 8   TFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDRM 67

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP---------------------- 554
              DVISWN++I GYA  GN   A  LF+ M    V                        
Sbjct: 68  PHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFV 127

Query: 555 ---------DPVTFIGVLSACSHVGLVDGGLKL-FECMTEVYAIEPLVEHYACMIDLLSR 604
                    D  TF  VL ACS  G+ D GL L   C+      E  V   + ++D+ S+
Sbjct: 128 RMRSLKIPHDYATFSVVLKACS--GIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSK 185

Query: 605 AGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
             +LD AF + + M  + N   W  ++  
Sbjct: 186 CKKLDGAFRIFREMP-ERNLVCWSAVIAG 213



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 28/195 (14%)

Query: 10  NKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLF 69
           N  S V+  +  +    K G ++++  +F +  +++ VT+++MI AYA +G    A KLF
Sbjct: 572 NLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMICAYAYHGHGEQAIKLF 631

Query: 70  EQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKG--ELEKA 127
           E+M   N                VK    +F  + R      A     Y  KG    +  
Sbjct: 632 EEMQLLN----------------VKPNHTIFISVLR------ACAHMGYVDKGLHYFQIM 669

Query: 128 RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNGE 186
           +  + L P+ E  +C   MV    +    NEA KL+++M    + V W ++LS     G 
Sbjct: 670 QSHYGLDPHMEHYSC---MVDLLGRSDQVNEALKLIESMHFEADDVIWRTLLSNCKMQGN 726

Query: 187 MHLASKFFEAMEERD 201
           + +A K F ++ + D
Sbjct: 727 VEVAEKAFNSLLQLD 741


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  370 bits (951), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 190/491 (38%), Positives = 294/491 (59%), Gaps = 4/491 (0%)

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR-GQIEEAARLFIEMPERNPVSWTTMID 303
           R+G +  A   F   P +    +N ++A Y +  G++ +A  LF  +P  + VS+ T++ 
Sbjct: 29  RHGDLAGAEEAFVSTPRKTTATYNCLLAGYARAPGRLADARHLFDRIPTPDVVSYNTLLL 88

Query: 304 GYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVM 363
            +      D ARRL   MP +++A+   M+SG  ++  ++EA  +F  +   + V WN M
Sbjct: 89  CHFASGDADGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMPVRNSVSWNAM 148

Query: 364 IKGYAQCGRMDEAINLFRQMVNK-DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
           + G+A  G M  A   FR    K D V W  M++GY  I  +  A+K FE M   RN VS
Sbjct: 149 VSGFACSGDMSTAEEWFRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAM-PVRNLVS 207

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGK-KADHSTLACALSACAHLAALQLGRQIHHLA 481
           WNA+++G+++N    DAL++F  M +E   + + STL+  L  C++L+AL  G+QIH   
Sbjct: 208 WNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWC 267

Query: 482 IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
           +K     +L VG SL++MY KCG + +A +LF +    DV++WN++I+GYA +G+  EAI
Sbjct: 268 MKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAI 327

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601
            LFE M  EGV P+ +TF+ VL+AC H GL D G++ FE M E+Y IEP V+HY+CM+DL
Sbjct: 328 NLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDL 387

Query: 602 LSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCY 661
           L RAG+L+ A + ++ M  +P+   +GTLL ACR+++N++   +A  KL E +PQ    Y
Sbjct: 388 LCRAGKLERAVDFIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAY 447

Query: 662 ALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEIC 721
             L+N++A A +WD+V +VR  M+ +   K PG SWIE+K  +H F S D    +   I 
Sbjct: 448 VQLANIYAVANQWDDVSRVRRWMKDNTVVKTPGYSWIEIKGVLHEFRSNDRLHPQLYLIH 507

Query: 722 NTLKTLAAQIR 732
             L  LA +++
Sbjct: 508 EKLGQLAERMK 518



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 97/284 (34%), Positives = 154/284 (54%), Gaps = 10/284 (3%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL 88
           GR+ +A  +F ++   + V+YN+++  +  +G  + AR+LF  MP R++ SWN+M++G  
Sbjct: 63  GRLADARHLFDRIPTPDVVSYNTLLLCHFASGDADGARRLFASMPVRDVASWNTMVSGLS 122

Query: 89  HNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVA 148
            +  V+EA+ +F  M   +  SW  M++ +   G++  A E F   P KED   W AMV+
Sbjct: 123 KSGAVEEAKVVFLAMPVRNSVSWNAMVSGFACSGDMSTAEEWFRNAPEKEDAVLWTAMVS 182

Query: 149 GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLM 208
           GY  IGN  +A K  +AMP +N+VSWN++++GY KN     A + F  M     V  N  
Sbjct: 183 GYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNAS 242

Query: 209 LDGYVELDDLD-SAWKFFQKIPE--------QNVVSWVTMLSGYARNGRMLEARRLFDQM 259
               V L   + SA  F ++I +        +N+    +++S Y + G +  A  LF +M
Sbjct: 243 TLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEM 302

Query: 260 PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN-PVSWTTMI 302
             R+VVAWNAMI+ Y Q G  +EA  LF  M +     +W T +
Sbjct: 303 HTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFV 346



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 191/377 (50%), Gaps = 21/377 (5%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAK-NGRVNDARKLFEQMPQRNLVSWNSMIA 85
           + G +  A + F    +K T TYN +++ YA+  GR+ DAR LF+++P  ++VS+N+++ 
Sbjct: 29  RHGDLAGAEEAFVSTPRKTTATYNCLLAGYARAPGRLADARHLFDRIPTPDVVSYNTLLL 88

Query: 86  GYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNA 145
            +  +     AR LF  M   D+ SW  M++  ++ G +E+A+ +F  +P + ++  WNA
Sbjct: 89  CHFASGDADGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMPVR-NSVSWNA 147

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSK-NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS 204
           MV+G+A  G+ + A++     P K + V W +M+SGY   G +  A K+FEAM  R++VS
Sbjct: 148 MVSGFACSGDMSTAEEWFRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVS 207

Query: 205 WNLMLDGYVELDDLDSAWKFFQK-IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP--- 260
           WN ++ GYV+    D A + F+  + E NV    + LS        L A     Q+    
Sbjct: 208 WNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWC 267

Query: 261 -----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR 315
                 RN+    ++++ Y + G +  A  LF EM  R+ V+W  MI GY +     EA 
Sbjct: 268 MKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAI 327

Query: 316 RLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKI----GTHDVV-CWNVMIKG 366
            L ++M  + +         +++  +     D   Q F+ +    G    V  ++ M+  
Sbjct: 328 NLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDL 387

Query: 367 YAQCGRMDEAINLFRQM 383
             + G+++ A++  R M
Sbjct: 388 LCRAGKLERAVDFIRSM 404



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 158/313 (50%), Gaps = 42/313 (13%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK-NGEMHLASKFFEAMEERDV 202
            A VA   + G+   A++   + P K   ++N +L+GY +  G +  A   F+ +   DV
Sbjct: 21  TAAVAAAVRHGDLAGAEEAFVSTPRKTTATYNCLLAGYARAPGRLADARHLFDRIPTPDV 80

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR 262
           VS+N +L  +    D D A + F  +P ++V SW TM+SG +++G + EA+ +F  MP+R
Sbjct: 81  VSYNTLLLCHFASGDADGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMPVR 140

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPER-NPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           N V+WNAM++ +   G +  A   F   PE+ + V WT M+ GY+ I  + +A +  + M
Sbjct: 141 NSVSWNAMVSGFACSGDMSTAEEWFRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAM 200

Query: 322 PYKNIAAQTAMISGYVQNKRMDEANQIF-------------DKIGTHDVVCWNV------ 362
           P +N+ +  A+++GYV+N   D+A ++F               + +  + C N+      
Sbjct: 201 PVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFG 260

Query: 363 ---------------------MIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQI 401
                                ++  Y +CG +  A  LF +M  +D+V WN MI+GYAQ 
Sbjct: 261 KQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQH 320

Query: 402 RQMDDAVKIFEEM 414
               +A+ +FE M
Sbjct: 321 GDGKEAINLFERM 333



 Score =  119 bits (297), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 153/313 (48%), Gaps = 31/313 (9%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  ++ L KSG VEEA  +F  M  +N+V++N+M+S +A +G ++ A + F   P+
Sbjct: 111 VASWNTMVSGLSKSGAVEEAKVVFLAMPVRNSVSWNAMVSGFACSGDMSTAEEWFRNAPE 170

Query: 75  R-NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF-- 131
           + + V W +M++GY+    V +A + F+ M   +L SW  ++  Y +    + A  LF  
Sbjct: 171 KEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRT 230

Query: 132 -----DLLPNKEDTA-----CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
                ++ PN    +     C N    G+ K  +    K LL    S+N+    S++S Y
Sbjct: 231 MVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLL----SRNLTVGTSLVSMY 286

Query: 182 TKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWV 237
            K G++  A   F  M  RDVV+WN M+ GY +  D   A   F+++ ++ V    +++V
Sbjct: 287 CKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFV 346

Query: 238 TMLSGYARNGRMLEARRLFDQM-------PIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
            +L+     G      + F+ M       P   V  ++ M+    + G++E A      M
Sbjct: 347 VVLTACIHTGLCDFGIQCFEGMQELYGIEP--RVDHYSCMVDLLCRAGKLERAVDFIRSM 404

Query: 291 P-ERNPVSWTTMI 302
           P E +P ++ T++
Sbjct: 405 PFEPHPSAYGTLL 417



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 66/137 (48%), Gaps = 9/137 (6%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP----QRNL 77
           ++   K G +  A  +F +M  ++ V +N+MIS YA++G   +A  LFE+M     + N 
Sbjct: 283 VSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNW 342

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFD 132
           +++  ++   +H        + F+ M       P +  ++ M+    R G+LE+A +   
Sbjct: 343 ITFVVVLTACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIR 402

Query: 133 LLPNKEDTACWNAMVAG 149
            +P +   + +  ++A 
Sbjct: 403 SMPFEPHPSAYGTLLAA 419


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  370 bits (951), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 239/753 (31%), Positives = 380/753 (50%), Gaps = 109/753 (14%)

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGEL 124
           A++LF+Q P R+L   N ++  Y   D+ +EA  LF  ++R  L   +  ++C       
Sbjct: 55  AQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVC-- 112

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
             A      +  +    C    +  +  +GN                    S++  YTK 
Sbjct: 113 --AGSFNGTVGEQVHCQCVKCGLVHHLSVGN--------------------SLVDMYTKT 150

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI------PEQNVVSWV- 237
           G +    + F+ M +RDVVSWN +L GY      D  W+ F  +      P+   VS V 
Sbjct: 151 GNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVI 210

Query: 238 --------------------------------TMLSGYARNGRMLEARRLFDQMPIRNVV 265
                                           +++S  +++G + +AR +FD M  ++ V
Sbjct: 211 AALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSV 270

Query: 266 AWNAMIAAYVQRGQIEEAARLF--IEMPERNPV--SWTTMIDGYVRIAKLDEARRL---- 317
           +WN+MIA +V  GQ  EA   F  +++    P   ++ ++I     + +L   R L    
Sbjct: 271 SWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKT 330

Query: 318 LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI-GTHDVVCWNVMIKGYAQCGRMDEA 376
           L      N    TA++    + K +D+A  +F  + G   VV W  MI GY Q G  D+A
Sbjct: 331 LKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQA 390

Query: 377 INLF----RQMVNKDIVTWNTMIA-------------------------------GYAQI 401
           +NLF    R+ V  +  T++T++                                 + +I
Sbjct: 391 VNLFSLMRREGVKPNHFTYSTILTVQHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVKI 450

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
             + DAVK+FE + + ++ ++W+A+++G+ Q     +A KIF  +T+EG K +  T    
Sbjct: 451 GNISDAVKVFE-LIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSI 509

Query: 462 LSAC-AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVD 520
           ++AC A  A+++ G+Q H  AIK    N L V +SL+T+YAK G I++A  +FK     D
Sbjct: 510 INACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERD 569

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE 580
           ++SWNS+I+GYA +G A +A+++FEEM    +  D +TFIGV+SAC+H GLV  G   F 
Sbjct: 570 LVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFN 629

Query: 581 CMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNI 640
            M   + I P +EHY+CMIDL SRAG L +A +++ GM   P A +W  +L A R+H+NI
Sbjct: 630 IMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNI 689

Query: 641 KLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEV 700
           +LG++A EK+  LEPQ ++ Y LLSN++A AG W E   VR  M+    +K+PG SWIEV
Sbjct: 690 ELGKLAAEKIISLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEV 749

Query: 701 KNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           KN+ ++FL+GD     +  I + L  L  ++R+
Sbjct: 750 KNKTYSFLAGDLSHPLSDHIYSKLSELNTRLRD 782



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 138/560 (24%), Positives = 259/560 (46%), Gaps = 85/560 (15%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           NS++  Y K G V D R++F++M  R++VSWNS++ GY  N    +  ELF  M    +R
Sbjct: 141 NSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYR 200

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPN----KEDTACWNAMVAGYAKIGNYNEAKK 161
           PD ++ + +I     +G +    ++  L+       E   C N++++  +K G   +A+ 
Sbjct: 201 PDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVC-NSLISMLSKSGMLRDARV 259

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG----YVELDD 217
           + D M +K+ VSWNSM++G+  NG+        EA E  +    N+ L G    +     
Sbjct: 260 VFDNMENKDSVSWNSMIAGHVINGQD------LEAFETFN----NMQLAGAKPTHATFAS 309

Query: 218 LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRML--------------EARRLFDQMP-IR 262
           +  +    +++    V+   T+ SG + N  +L              +A  LF  M  ++
Sbjct: 310 VIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQ 369

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLL 318
           +VV+W AMI+ Y+Q G  ++A  LF  M       N  +++T++     +   +    ++
Sbjct: 370 SVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVFISEIHAEVI 429

Query: 319 DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
                K+ +  TA++  +V+   + +A ++F+ I T DV+ W+ M+ GYAQ G  +EA  
Sbjct: 430 KTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAK 489

Query: 379 LFRQM----------------------------------------VNKDIVTWNTMIAGY 398
           +F Q+                                        +N  +   ++++  Y
Sbjct: 490 IFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLY 549

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           A+   ++ A +IF+   K R+ VSWN++ISG+ Q+     AL++F  M +   + D  T 
Sbjct: 550 AKRGNIESAHEIFKRQ-KERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITF 608

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS-LITMYAKCGRIQNA-ELLFKDA 516
              +SACAH   +  G+   ++ I   ++N      S +I +Y++ G +  A +++    
Sbjct: 609 IGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMP 668

Query: 517 DPVDVISWNSLIAGYAINGN 536
            P     W  ++A   ++ N
Sbjct: 669 FPPAATVWRIVLAASRVHRN 688



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 125/499 (25%), Positives = 213/499 (42%), Gaps = 80/499 (16%)

Query: 183 KNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI------PEQNVVSW 236
           ++ +   A + F+    RD+   N +L  Y   D    A   F  +      P+   +S 
Sbjct: 48  RDSDPRFAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSC 107

Query: 237 VTMLSGYARNGRMLEAR--RLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
           V  +   + NG + E    +      + ++   N+++  Y + G + +  R+F EM +R+
Sbjct: 108 VLSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRD 167

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQM-------PYKNIAAQTAMISGYVQNKRMDEANQ 347
            VSW +++ GY      D+   L   M        Y  ++   A ++         + + 
Sbjct: 168 VVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHA 227

Query: 348 IFDKIG--THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMD 405
           +  K+G  T  +VC N +I   ++ G + +A  +F  M NKD V+WN+MIAG+       
Sbjct: 228 LVVKLGFETERLVC-NSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGH------- 279

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
                               +I+G  Q+   L+A + F  M   G K  H+T A  + +C
Sbjct: 280 --------------------VING--QD---LEAFETFNNMQLAGAKPTHATFASVIKSC 314

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV-DVISW 524
           A L  L L R +H   +KSG   +  V  +L+    KC  I +A  LF     V  V+SW
Sbjct: 315 ASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSW 374

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA------------------- 565
            ++I+GY  NG+  +A+ LF  M  EGV P+  T+  +L+                    
Sbjct: 375 TAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVFISEIHAEVIKTNYE 434

Query: 566 -CSHVG--LVDGGLKLFECMTEVYAIEPL----VEHYACMIDLLSRAGRLDEA---FEMV 615
             S VG  L+D  +K+      V   E +    V  ++ M+   ++AG  +EA   F  +
Sbjct: 435 KSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQL 494

Query: 616 KGMKIKPNAGIWGTLLGAC 634
               IKPN   + +++ AC
Sbjct: 495 TREGIKPNEFTFCSIINAC 513



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/442 (22%), Positives = 195/442 (44%), Gaps = 64/442 (14%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM----PQ 74
           N  I+ L KSG + +A  +F  M  K++V++NSMI+ +  NG+  +A + F  M     +
Sbjct: 242 NSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAK 301

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFS-----WALMITCYTRKGELEKARE 129
               ++ S+I       ++   R L  K  +  L +      ALM+   T+  E++ A  
Sbjct: 302 PTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVA-LTKCKEIDDAFS 360

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSMLSGYTKNG 185
           LF L+   +    W AM++GY + G+ ++A  L   M  +    N  +++++L+      
Sbjct: 361 LFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVF 420

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR 245
              + ++  +   E+       +LD +V++ ++  A K F+ I  ++V++W  ML+GYA+
Sbjct: 421 ISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQ 480

Query: 246 NGRMLEARRLFDQM---------------------PIRNV-------------------V 265
            G   EA ++F Q+                     P  +V                    
Sbjct: 481 AGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALC 540

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
             ++++  Y +RG IE A  +F    ER+ VSW +MI GY +  +  +A  + ++M  +N
Sbjct: 541 VSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRN 600

Query: 326 IAAQT----AMISGYVQNKRMDEANQIFD-KIGTHDV----VCWNVMIKGYAQCGRMDEA 376
           +         +IS       + +    F+  I  H +      ++ MI  Y++ G + +A
Sbjct: 601 LEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKA 660

Query: 377 INLFRQMVNKDIVT-WNTMIAG 397
           +++   M      T W  ++A 
Sbjct: 661 MDIINGMPFPPAATVWRIVLAA 682



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/340 (21%), Positives = 162/340 (47%), Gaps = 30/340 (8%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           +K++    +++ A+ K G ++DA K+FE +  +++++W++M+AGY    + +EA ++F +
Sbjct: 434 EKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQ 493

Query: 103 MFR----PDLFSWALMI-TCYTRKGELEKAREL--FDLLPNKEDTAC-WNAMVAGYAKIG 154
           + R    P+ F++  +I  C      +E+ ++   + +     +  C  +++V  YAK G
Sbjct: 494 LTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRG 553

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLD 210
           N   A ++      +++VSWNSM+SGY ++G+   A + FE M++R    D +++  ++ 
Sbjct: 554 NIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVIS 613

Query: 211 GYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPIRN-V 264
                  +     +F  +   + ++     +  M+  Y+R G + +A  + + MP     
Sbjct: 614 ACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAA 673

Query: 265 VAWNAMIAAYVQRGQIE---EAARLFIEMPERNPVSWTTMIDGY---------VRIAKLD 312
             W  ++AA      IE    AA   I +  ++  ++  + + Y         V + KL 
Sbjct: 674 TVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLM 733

Query: 313 EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
           + RR+  +  Y  I  +    S    +     ++ I+ K+
Sbjct: 734 DKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHIYSKL 773


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 207/649 (31%), Positives = 353/649 (54%), Gaps = 25/649 (3%)

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDA 165
           PD   W+ ++  Y +   L+ AR++ + +P  +D   WN  ++         EA +L   
Sbjct: 22  PDSHLWSSLVNVYVKCESLQCARQVLEEMP-IQDVQQWNQKLSSANSPYPLQEAVQLFYL 80

Query: 166 MPSKNI----VSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSWNLMLDGYVELDD 217
           M    I      + S++S     G+ H        +     E D++  N  +  Y++   
Sbjct: 81  MRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQS 140

Query: 218 LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAA 273
           +++ W+FF+ +  +N+ S   +LSG+       +  R+  Q+ +     N+  + +++  
Sbjct: 141 VENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKT 200

Query: 274 YVQRGQIEEAARLFIEMPER--NPVS--WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
              +G + E   +  ++ +   NP S  W ++++ Y +    + A ++  ++P +++ + 
Sbjct: 201 CASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSW 260

Query: 330 TAMISGYVQ---NKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
           TA+I+G+V       +   NQ+  +    ++  +  +++  +    +D    +  Q+V  
Sbjct: 261 TALITGFVAEGYGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKN 320

Query: 387 DI----VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI 442
            +         ++  YA+ R ++DA  IF  + KR +  +W  +++G+ Q+     A+K 
Sbjct: 321 SLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKR-DLFAWTVIVAGYAQDGQGEKAVKC 379

Query: 443 FVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
           F+ M +EG K +  TLA +LS C+ +A L  GRQ+H +AIK+G   D+FV ++L+ MYAK
Sbjct: 380 FIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAK 439

Query: 503 CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
           CG +++AE++F      D +SWN++I GY+ +G   +A+K FE M+ EG  PD VTFIGV
Sbjct: 440 CGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGV 499

Query: 563 LSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKP 622
           LSACSH+GL++ G K F  ++++Y I P +EHYACM+D+L RAG+  E    ++ MK+  
Sbjct: 500 LSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTS 559

Query: 623 NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRV 682
           N  IW T+LGAC+MH NI+ G  A  KL ELEP+  S Y LLSNM A  G WD+V  VR 
Sbjct: 560 NVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRA 619

Query: 683 SMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
            M   G +K+PGCSW+EV  Q+H FLS D    +  EI   L+ L  ++
Sbjct: 620 LMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKL 668



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 127/568 (22%), Positives = 254/568 (44%), Gaps = 76/568 (13%)

Query: 49  YNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----F 104
           ++S+++ Y K   +  AR++ E+MP +++  WN  ++       ++EA +LF  M     
Sbjct: 27  WSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFYLMRHTRI 86

Query: 105 RPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKK 161
           R + F +A +I+     G+      +   +     + D    NA V  Y K  +     +
Sbjct: 87  RLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQ 146

Query: 162 LLDAMPSKNIVSWNSMLSGYTKN-----GEMHLASKFFEAMEERDVVSWNLMLDGYVELD 216
              AM  +N+ S N++LSG+        G   L     E  E  ++ ++  +L       
Sbjct: 147 FFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEP-NMYTFISILKTCASKG 205

Query: 217 DLDSAWKFFQKI------PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAM 270
           DL+       ++      P+ ++  W ++++ YA+ G    A ++F ++P R+VV+W A+
Sbjct: 206 DLNEGKAIHGQVIKSGINPDSHL--WNSLVNVYAKCGSANYACKVFGEIPERDVVSWTAL 263

Query: 271 IAAYVQRGQIEEAARLFIEMPER--NPVSWT--TMIDGYVRIAKLDEARRLLDQMPYKNI 326
           I  +V  G      R+F +M     NP  +T  +++     ++ +D  +++  Q+   ++
Sbjct: 264 ITGFVAEG-YGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSL 322

Query: 327 AAQ----TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
                  TA++  Y +N+ +++A  IF+++   D+  W V++ GYAQ G+ ++A+  F Q
Sbjct: 323 DGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQ 382

Query: 383 MVNK---------------------------------------DIVTWNTMIAGYAQIRQ 403
           M  +                                       D+   + ++  YA+   
Sbjct: 383 MQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGC 442

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS 463
           ++DA  +F+ +   R+TVSWN +I G+ Q+     ALK F  M  EG   D  T    LS
Sbjct: 443 VEDAEVVFDGL-VSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLS 501

Query: 464 ACAHLAALQLGRQ-IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD-PVDV 521
           AC+H+  ++ G++  + L+   G    +     ++ +  + G+    E   ++     +V
Sbjct: 502 ACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNV 561

Query: 522 ISWNSLIAGYAINGN----ATEAIKLFE 545
           + W +++    ++GN       A+KLFE
Sbjct: 562 LIWETVLGACKMHGNIEFGERAAMKLFE 589



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 131/268 (48%), Gaps = 17/268 (6%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           N     +++  YAKN  + DA  +F ++ +R+L +W  ++AGY  + + ++A + F +M 
Sbjct: 325 NDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQ 384

Query: 105 R----PDLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYN 157
           R    P+ F+ A  ++  +R   L+  R+L  +        D    +A+V  YAK G   
Sbjct: 385 REGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVE 444

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYV 213
           +A+ + D + S++ VSWN+++ GY+++G+   A K FEAM +     D V++  +L    
Sbjct: 445 DAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACS 504

Query: 214 ELDDLDSAWKFFQKIPE-----QNVVSWVTMLSGYARNGRMLEARRLFDQMPI-RNVVAW 267
            +  ++   K F  + +       +  +  M+    R G+  E     ++M +  NV+ W
Sbjct: 505 HMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIW 564

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNP 295
             ++ A    G IE   R  +++ E  P
Sbjct: 565 ETVLGACKMHGNIEFGERAAMKLFELEP 592



 Score = 47.0 bits (110), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 88/209 (42%), Gaps = 5/209 (2%)

Query: 468 LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSL 527
           L A  + ++I    IK+G   D  + +SL+ +Y KC  +Q A  + ++    DV  WN  
Sbjct: 2   LRAKYILKKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQK 61

Query: 528 IAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYA 587
           ++         EA++LF  M    +  +   F  ++SA + +G    G  +  C+ + Y 
Sbjct: 62  LSSANSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCK-YG 120

Query: 588 IEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAV 647
            E  +      + +  +   ++  ++  K M I+  A     L G C      +  RI +
Sbjct: 121 FESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILI 180

Query: 648 EKLSE-LEPQKTSCYALLSNMHAEAGRWD 675
           + L E  EP     Y  +S +   A + D
Sbjct: 181 QLLVEGFEPNM---YTFISILKTCASKGD 206


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 215/644 (33%), Positives = 345/644 (53%), Gaps = 56/644 (8%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----E 199
           N ++  Y+  GN  EA+++ D++ +K +V+WN++++GY + G +  A   F  M     E
Sbjct: 96  NTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLE 155

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS----WVTMLSGYARNGRMLEARRL 255
             ++++  +LD       L+   +   ++     VS       ++S Y + G M +AR++
Sbjct: 156 PSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQV 215

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE----RNPVSWTTMIDGYVRIAKL 311
           FD + IR+V  +N M+  Y + G  E+A  LF  M +     N +S+ +++DG      L
Sbjct: 216 FDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEAL 275

Query: 312 DEAR----RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367
              +    + ++     +I   T++I  Y     ++ A ++FD +   DVV W VMI+GY
Sbjct: 276 AWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGY 335

Query: 368 AQCGRMDEAINLFRQM----VNKDIVTWNTM---------------------IAG----- 397
           A+ G +++A  LF  M    +  D +T+  +                     IAG     
Sbjct: 336 AENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDL 395

Query: 398 ---------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
                    YA+   + DA ++F+ M  RR+ VSW+A+I  +++N +  +A + F LM +
Sbjct: 396 LVSTALVHMYAKCGAIKDARQVFDAM-PRRDVVSWSAMIGAYVENGYGTEAFETFHLMKR 454

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
              + D  T    L+AC HL AL +G +I+  AIK+  V+ + +GN+LI M AK G ++ 
Sbjct: 455 SNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVER 514

Query: 509 AELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
           A  +F      DVI+WN++I GY+++GNA EA+ LF+ M+ E   P+ VTF+GVLSACS 
Sbjct: 515 ARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSR 574

Query: 569 VGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWG 628
            G VD G + F  + E   I P V+ Y CM+DLL RAG LDEA  ++K M +KP + IW 
Sbjct: 575 AGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWS 634

Query: 629 TLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688
           +LL ACR+H N+ +   A E+   ++P   + Y  LS+M+A AG W+ V KVR  ME  G
Sbjct: 635 SLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRG 694

Query: 689 AQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            +K+ GC+WIEV  ++HTF+  D       EI   L  L   I+
Sbjct: 695 IRKEQGCTWIEVAGKVHTFVVEDRSHPLVGEIYAELARLMNAIK 738



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 126/511 (24%), Positives = 229/511 (44%), Gaps = 99/511 (19%)

Query: 9   GNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKL 68
           G +   ++  N  I      G V EA +IF  +  K  VT+N++I+ YA+ G V +A  L
Sbjct: 86  GGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFAL 145

Query: 69  FEQMPQRNL----VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTR 120
           F QM    L    +++ S++        +   +E+  ++    F  D      +++ Y +
Sbjct: 146 FRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVK 205

Query: 121 KGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS----KNIVSWNS 176
            G ++ AR++FD L +  D + +N MV GYAK G++ +A +L   M       N +S+ S
Sbjct: 206 GGSMDDARQVFDGL-HIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLS 264

Query: 177 MLSG-----------------------------------YTKNGEMHLASKFFEAMEERD 201
           +L G                                   YT  G +  A + F+ M+ RD
Sbjct: 265 ILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRD 324

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSG--------------- 242
           VVSW +M++GY E  +++ A+  F  + E+ +    ++++ +++                
Sbjct: 325 VVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHS 384

Query: 243 --------------------YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEE 282
                               YA+ G + +AR++FD MP R+VV+W+AMI AYV+ G   E
Sbjct: 385 QVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTE 444

Query: 283 AARLFIEMPERN----PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT----AMIS 334
           A   F  M   N     V++  +++    +  LD    +  Q    ++ +      A+I 
Sbjct: 445 AFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALII 504

Query: 335 GYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVT 390
              ++  ++ A  IFD +   DV+ WN MI GY+  G   EA+ LF +M+ +    + VT
Sbjct: 505 MNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVT 564

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
           +  +++  ++   +D+  + F  + + R  V
Sbjct: 565 FVGVLSACSRAGFVDEGRRFFTYLLEGRGIV 595


>gi|449456490|ref|XP_004145982.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Cucumis sativus]
          Length = 710

 Score =  370 bits (950), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 223/711 (31%), Positives = 374/711 (52%), Gaps = 61/711 (8%)

Query: 81  NSMIAGYLHNDKVKEARELFDKMFR------PDLFSWALMITCYTRKGELEKARELFDLL 134
           +S +  + HN + K   ELF  +         ++ S  + I+ + R G L+ A+ LF+ +
Sbjct: 5   SSSLGTWKHN-RWKACLELFSTLCEGLHTENSNIISTNIYISRHVRDGHLDLAQTLFNEM 63

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLS-----GYTKNG 185
           P +   + WN M++GY+K G Y+EA  L   M   N+     +++S+LS     G +  G
Sbjct: 64  PVRSVVS-WNIMISGYSKFGKYSEALNLASEMHCNNVKLNETTFSSLLSICAHSGCSSEG 122

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR 245
           +          ++  + V  + ++  Y  ++D+  A + F ++ ++N + W  +L GY +
Sbjct: 123 KQFHCLVLKSGLQIFERVG-SALVYFYANINDISGAKQVFDELHDKNDLLWDLLLVGYVK 181

Query: 246 NGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ-IEEAARLFIEM---PERNP------ 295
              M +A  LF ++P R+VVAW  MI+AY +     +    LF  M    E  P      
Sbjct: 182 CNLMDDALDLFMKIPTRDVVAWTTMISAYARSEHNCKRGLELFCSMRMNGEVEPNEFTFD 241

Query: 296 -----------VSWTTMIDG--------------------YVRIAKLDEARRLLDQMPYK 324
                      +SW  ++ G                    Y +   +D A+ + D M   
Sbjct: 242 SVVRACGRMRYLSWGKVVHGILTKYGFHFDHSVCSALILFYCQCEAIDNAKAVYDSMERP 301

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
            + A  +++ G +   R+++A +IF K+   + V +N+M+KGYA  GR++ +  LF +M 
Sbjct: 302 CLKASNSLLEGLIFAGRINDAEEIFCKLREKNPVSYNLMLKGYATSGRIEGSKRLFERMT 361

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
           +K   + NTMI+ Y++  ++D A K+FE +    + V+WN++ISG +QN  H  ALK+++
Sbjct: 362 HKTTSSLNTMISVYSRNGEIDKAFKLFESVKSEGDPVTWNSMISGCIQNHQHEGALKLYI 421

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG 504
            M +   +   ST +    AC  L  +QLG+ +H  AI+  + ++++VG SLI MYAKCG
Sbjct: 422 TMCRTSVERSRSTFSALFQACTCLEYIQLGQALHVHAIREAFDSNVYVGTSLIDMYAKCG 481

Query: 505 RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLS 564
            I +A+  F      +V ++ +LI GY  +G   EA  +F+EM+   V P+  T +G+LS
Sbjct: 482 SIYDAQTSFASVCFPNVAAFTALINGYVHHGLGIEAFSVFDEMLKHKVPPNGATLLGILS 541

Query: 565 ACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNA 624
           ACS  G+V  G+ +F  M + Y + P +EHYAC++DLL R+GRL EA   ++ M I+ + 
Sbjct: 542 ACSCAGMVKEGMTVFHSMEKCYGVIPTLEHYACVVDLLGRSGRLYEAEAFIRCMPIEADR 601

Query: 625 GIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSM 684
            IWG LL AC    +++LG    +K+  L+P+  S Y +LSN++A+ G+W E   VR  +
Sbjct: 602 VIWGALLNACWFWMDLELGESVAKKVLSLDPKAISAYIILSNIYAKLGKWVEKINVRRQL 661

Query: 685 EGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNTP 735
                +K  GCSWI+V N+   F +GD        I +TL+ L A +  TP
Sbjct: 662 MSLKVKKIRGCSWIDVNNKTCVFSAGDRSHPNCNAIYSTLEHLLANV--TP 710



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 136/600 (22%), Positives = 264/600 (44%), Gaps = 101/600 (16%)

Query: 27  KSGRVEEAIKIFSQMSQ------KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSW 80
           K  R +  +++FS + +       N ++ N  IS + ++G ++ A+ LF +MP R++VSW
Sbjct: 12  KHNRWKACLELFSTLCEGLHTENSNIISTNIYISRHVRDGHLDLAQTLFNEMPVRSVVSW 71

Query: 81  NSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPN 136
           N MI+GY    K  EA  L  +M     + +  +++ +++     G   + ++ F  L  
Sbjct: 72  NIMISGYSKFGKYSEALNLASEMHCNNVKLNETTFSSLLSICAHSGCSSEGKQ-FHCLVL 130

Query: 137 KEDTACW----NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
           K     +    +A+V  YA I + + AK++ D +  KN + W+ +L GY K   M  A  
Sbjct: 131 KSGLQIFERVGSALVYFYANINDISGAKQVFDELHDKNDLLWDLLLVGYVKCNLMDDALD 190

Query: 193 FFEAMEERDVVSWNLMLDGYVELD-DLDSAWKFFQKI-------PEQ------------- 231
            F  +  RDVV+W  M+  Y   + +     + F  +       P +             
Sbjct: 191 LFMKIPTRDVVAWTTMISAYARSEHNCKRGLELFCSMRMNGEVEPNEFTFDSVVRACGRM 250

Query: 232 NVVSWVTMLSG--------------------YARNGRMLEARRLFDQMPIRNVVAWNAMI 271
             +SW  ++ G                    Y +   +  A+ ++D M    + A N+++
Sbjct: 251 RYLSWGKVVHGILTKYGFHFDHSVCSALILFYCQCEAIDNAKAVYDSMERPCLKASNSLL 310

Query: 272 AAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
              +  G+I +A  +F ++ E+NPVS+  M+ GY    +++ ++RL ++M +K  ++   
Sbjct: 311 EGLIFAGRINDAEEIFCKLREKNPVSYNLMLKGYATSGRIEGSKRLFERMTHKTTSSLNT 370

Query: 332 MISGYVQNKRMDEANQIFDKIGTH-DVVCWNVMIKGYAQCGRMDEAINLF---------- 380
           MIS Y +N  +D+A ++F+ + +  D V WN MI G  Q  + + A+ L+          
Sbjct: 371 MISVYSRNGEIDKAFKLFESVKSEGDPVTWNSMISGCIQNHQHEGALKLYITMCRTSVER 430

Query: 381 -----------------------------RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIF 411
                                        R+  + ++    ++I  YA+   + DA   F
Sbjct: 431 SRSTFSALFQACTCLEYIQLGQALHVHAIREAFDSNVYVGTSLIDMYAKCGSIYDAQTSF 490

Query: 412 EEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAAL 471
             +    N  ++ ALI+G++ +   ++A  +F  M +     + +TL   LSAC+    +
Sbjct: 491 ASVC-FPNVAAFTALINGYVHHGLGIEAFSVFDEMLKHKVPPNGATLLGILSACSCAGMV 549

Query: 472 QLGRQIHHLAIKS-GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWNSLI 528
           + G  + H   K  G +  L     ++ +  + GR+  AE   +   P+  D + W +L+
Sbjct: 550 KEGMTVFHSMEKCYGVIPTLEHYACVVDLLGRSGRLYEAEAFIR-CMPIEADRVIWGALL 608



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/381 (23%), Positives = 177/381 (46%), Gaps = 31/381 (8%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHN 90
           ++ A  ++  M +      NS++      GR+NDA ++F ++ ++N VS+N M+ GY  +
Sbjct: 288 IDNAKAVYDSMERPCLKASNSLLEGLIFAGRINDAEEIFCKLREKNPVSYNLMLKGYATS 347

Query: 91  DKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGY 150
            +++ ++ LF++M      S   MI+ Y+R GE++KA +LF+ + ++ D   WN+M++G 
Sbjct: 348 GRIEGSKRLFERMTHKTTSSLNTMISVYSRNGEIDKAFKLFESVKSEGDPVTWNSMISGC 407

Query: 151 AKIGNYNEAKKLLDAMPSKNIVSWNSMLSG---------YTKNGEMHLASKFFEAMEERD 201
            +   +  A KL   M   ++    S  S          Y + G+        EA +   
Sbjct: 408 IQNHQHEGALKLYITMCRTSVERSRSTFSALFQACTCLEYIQLGQALHVHAIREAFDSNV 467

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
            V  +L +D Y +   +  A   F  +   NV ++  +++GY  +G  +EA  +FD+M  
Sbjct: 468 YVGTSL-IDMYAKCGSIYDAQTSFASVCFPNVAAFTALINGYVHHGLGIEAFSVFDEMLK 526

Query: 262 RNVVAWNA----MIAAYVQRGQIEEAARLFIEMPERNPV-----SWTTMIDGYVRIAKLD 312
             V    A    +++A    G ++E   +F  M +   V      +  ++D   R  +L 
Sbjct: 527 HKVPPNGATLLGILSACSCAGMVKEGMTVFHSMEKCYGVIPTLEHYACVVDLLGRSGRLY 586

Query: 313 EARRLLDQMPYKNIAAQTAMISGYVQNK-----RMDEANQIFDKIGTHD---VVCWNVMI 364
           EA   +  MP +       +I G + N       ++    +  K+ + D   +  + ++ 
Sbjct: 587 EAEAFIRCMPIE----ADRVIWGALLNACWFWMDLELGESVAKKVLSLDPKAISAYIILS 642

Query: 365 KGYAQCGRMDEAINLFRQMVN 385
             YA+ G+  E IN+ RQ+++
Sbjct: 643 NIYAKLGKWVEKINVRRQLMS 663


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 217/672 (32%), Positives = 349/672 (51%), Gaps = 69/672 (10%)

Query: 123 ELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYT 182
           E +K  + F    +  D++  + +   Y        A++L D +P+ +++ WN ++  Y 
Sbjct: 26  EAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYA 85

Query: 183 KNGEMHLASKFFEAMEERDV----VSWNLML---DGYVELDD---LDSAWKFFQKIPEQN 232
            NG    A   + +M    V     ++  +L    G + ++D   + S  K F    E +
Sbjct: 86  WNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGL--ESD 143

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE 292
           V     ++  YA+ G ++EA+RLF  M  R+VVAWNAMIA     G  ++A +L ++M E
Sbjct: 144 VFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQE 203

Query: 293 RNPVSWTTMIDGYVRIAKLDEA------------RRLLDQMPYKNIAAQTAMISGYVQNK 340
                 ++ I G +      +A            RR  D      +   T ++  Y + +
Sbjct: 204 EGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDN----GVVVGTGLLDMYAKCQ 259

Query: 341 RMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD------------- 387
            +  A +IFD +G  + V W+ MI GY     M EA+ LF QM+ KD             
Sbjct: 260 CLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVL 319

Query: 388 ---------------------------IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
                                      I+  NT+++ YA+   +DDA++ F+EM  + ++
Sbjct: 320 RACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPK-DS 378

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
           VS++A++SG +QN     AL IF +M   G   D +T+   L AC+HLAALQ G   H  
Sbjct: 379 VSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGY 438

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEA 540
            I  G+  D  + N+LI MY+KCG+I  A  +F   D  D++SWN++I GY I+G   EA
Sbjct: 439 LIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEA 498

Query: 541 IKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMID 600
           + LF +++  G+ PD +TFI +LS+CSH GLV  G   F+ M+  ++I P +EH  CM+D
Sbjct: 499 LGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVD 558

Query: 601 LLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSC 660
           +L RAG +DEA   ++ M  +P+  IW  LL ACR+H+NI+LG    +K+  L P+ T  
Sbjct: 559 ILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGN 618

Query: 661 YALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           + LLSN+++ AGRWD+   +R++ +  G +K PGCSWIE+   +H F+ GD    + ++I
Sbjct: 619 FVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQI 678

Query: 721 CNTLKTLAAQIR 732
              L+ L  +++
Sbjct: 679 NRKLEELLVEMK 690



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 138/591 (23%), Positives = 262/591 (44%), Gaps = 76/591 (12%)

Query: 27  KSGRVEEAIKIFSQM----SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNS 82
           +S  + EA KI        S  ++   + +   Y    +V  AR+LF+++P  +++ WN 
Sbjct: 20  QSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQ 79

Query: 83  MIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFD---LLP 135
           +I  Y  N     A +L+  M     RP+ +++  ++   +    +E   E+     +  
Sbjct: 80  IIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFG 139

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
            + D     A+V  YAK G   EA++L  +M  +++V+WN+M++G +  G    A +   
Sbjct: 140 LESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIM 199

Query: 196 AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP--------EQNVVSWVTMLSGYARNG 247
            M+E  +   +  + G +       A    + +         +  VV    +L  YA+  
Sbjct: 200 QMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQ 259

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN-----PVSWTTMI 302
            +L AR++FD M +RN V+W+AMI  YV    ++EA  LF +M  ++     PV+  +++
Sbjct: 260 CLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVL 319

Query: 303 DGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV 358
               ++  L   R+L    +      +I     ++S Y +   +D+A + FD++   D V
Sbjct: 320 RACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSV 379

Query: 359 CWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVT------------------------ 390
            ++ ++ G  Q G    A+++FR M    ++ D+ T                        
Sbjct: 380 SFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYL 439

Query: 391 -----------WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDA 439
                       N +I  Y++  ++  A ++F  M  R + VSWNA+I G+  +   ++A
Sbjct: 440 IVRGFATDTLICNALIDMYSKCGKISFAREVFNRM-DRHDIVSWNAMIIGYGIHGLGMEA 498

Query: 440 LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ-IHHLAIKSGYVNDLFVGNSLIT 498
           L +F  +   G K D  T  C LS+C+H   +  GR     ++     V  +     ++ 
Sbjct: 499 LGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVD 558

Query: 499 MYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
           +  + G I  A    ++   +P DV  W++L++   I+ N    I+L EE+
Sbjct: 559 ILGRAGLIDEAHHFIRNMPFEP-DVRIWSALLSACRIHKN----IELGEEV 604



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 14/182 (7%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           L AC    +L   ++IH   +K+    D  V + L  +Y  C ++  A  LF +     V
Sbjct: 15  LEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSV 74

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGL----- 576
           I WN +I  YA NG    AI L+  M+  GV P+  T+  VL ACS +  ++ G+     
Sbjct: 75  ILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSH 134

Query: 577 -KLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACR 635
            K+F   ++V+    LV+ YA       + G L EA  +   M  + +   W  ++  C 
Sbjct: 135 AKMFGLESDVFVCTALVDFYA-------KCGILVEAQRLFSSMSHR-DVVAWNAMIAGCS 186

Query: 636 MH 637
           ++
Sbjct: 187 LY 188



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 9/139 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  I    K G++  A ++F++M + + V++N+MI  Y  +G   +A  LF  +    L 
Sbjct: 452 NALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLK 511

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARE 129
              +++  +++   H+  V E R  FD M R     P +     M+    R G +++A  
Sbjct: 512 PDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHH 571

Query: 130 LFDLLPNKEDTACWNAMVA 148
               +P + D   W+A+++
Sbjct: 572 FIRNMPFEPDVRIWSALLS 590


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 224/687 (32%), Positives = 360/687 (52%), Gaps = 69/687 (10%)

Query: 81  NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP-NKED 139
           N +I  Y  +  +  AR LFDK+ +PD+ +   M++ Y+  G ++ A +LF+  P +  D
Sbjct: 35  NRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYSAAGNIKLAHQLFNATPMSIRD 94

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV----SWNSMLSGY-------TKNGEMH 188
           T  +NAM+  ++   + + A +L   M     V    +++S+L          T   ++H
Sbjct: 95  TVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQQLH 154

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDD---------LDSAWKFFQKIP--EQNVVSWV 237
                + A+    V+  N ++  YV             + +A K F + P   ++  +W 
Sbjct: 155 CEVFKWGALSVPSVL--NALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWT 212

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ER 293
           T+++GY RN  ++ AR L + M     VAWNAMI+ YV RG  EEA  L   M     + 
Sbjct: 213 TIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQL 272

Query: 294 NPVSWTTMID-----GYVRIAKLDEA---RRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
           +  ++T++I      G   I +   A   R ++    +  ++   A+I+ Y +  ++ EA
Sbjct: 273 DEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEA 332

Query: 346 NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMD 405
            ++FDK+   D+V WN ++ G     R++EA ++FR+M  + ++TW  MI+G A      
Sbjct: 333 RRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLA------ 386

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
                                     QN F  + LK+F  M  EG +      A A+++C
Sbjct: 387 --------------------------QNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASC 420

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
           + L +L  G+Q+H   I+ G+ + L VGN+LITMY++CG ++ A+ +F     VD +SWN
Sbjct: 421 SVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWN 480

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
           ++IA  A +G+  +AI+L+E+M+ E + PD +TF+ +LSACSH GLV  G   F+ M   
Sbjct: 481 AMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVC 540

Query: 586 YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI 645
           Y I P  +HY+ +IDLL RAG   EA  + + M  +P A IW  LL  C +H N++LG  
Sbjct: 541 YGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQ 600

Query: 646 AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705
           A ++L EL PQ+   Y  LSNM+A  G+WDEV +VR  M   G +K+PGCSWIEV+N +H
Sbjct: 601 AADRLLELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVENMVH 660

Query: 706 TFLSGDPKQCRTAEICNTLKTLAAQIR 732
            FL  D        +   L+ L  ++R
Sbjct: 661 VFLVDDAVHPEVHAVYRYLEQLVHEMR 687



 Score =  182 bits (461), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 153/615 (24%), Positives = 268/615 (43%), Gaps = 128/615 (20%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ--RN 76
           N+ I    KS  +  A  +F ++ + + V   +M+SAY+  G +  A +LF   P   R+
Sbjct: 35  NRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYSAAGNIKLAHQLFNATPMSIRD 94

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWA-------------------- 112
            VS+N+MI  + H+     A +LF +M    F PD F+++                    
Sbjct: 95  TVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQQLH 154

Query: 113 ----------------LMITCYTRKGE---------LEKARELFD-LLPNKEDTACWNAM 146
                            +++CY              +  AR+LFD   P + D   W  +
Sbjct: 155 CEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTI 214

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE--RDVVS 204
           +AGY +  +   A++LL+ M     V+WN+M+SGY   G       F+E   +  R + S
Sbjct: 215 IAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRG-------FYEEAFDLLRRMHS 267

Query: 205 WNLMLDGYVELDDLDSA-----WKFFQKI----------PEQNVVSWV--TMLSGYARNG 247
             + LD Y     + +A     +   +++          P  + V  V   +++ Y R G
Sbjct: 268 LGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCG 327

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVR 307
           +++EARR+FD+MP++++V+WNA+++  V   +IEEA  +F EMP R+ ++WT MI G  +
Sbjct: 328 KLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQ 387

Query: 308 IAKLDEARRLLDQMPYKNIAAQTAMISGYVQN----KRMDEANQIFDKIGT--HD--VVC 359
               +E  +L +QM  + +       +G + +      +D   Q+  +I    HD  +  
Sbjct: 388 NGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSV 447

Query: 360 WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRN 419
            N +I  Y++CG ++ A  +F  M   D V+WN MIA  AQ      A++++E+M K   
Sbjct: 448 GNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLK--- 504

Query: 420 TVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ-IH 478
                                        E    D  T    LSAC+H   ++ GR    
Sbjct: 505 -----------------------------EDILPDRITFLTILSACSHAGLVKEGRHYFD 535

Query: 479 HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE-----LLFKDADPVDVISWNSLIAGYAI 533
            + +  G   +    + LI +  + G    A+     + F+   P+    W +L+AG  I
Sbjct: 536 TMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPI----WEALLAGCWI 591

Query: 534 NGNATEAIKLFEEMV 548
           +GN    I+  + ++
Sbjct: 592 HGNMELGIQAADRLL 606



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 119/545 (21%), Positives = 210/545 (38%), Gaps = 157/545 (28%)

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD--KI 352
           P+    +ID Y +   +  AR L D++P  +I A T M+S Y     +  A+Q+F+   +
Sbjct: 31  PLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYSAAGNIKLAHQLFNATPM 90

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----------------------------- 383
              D V +N MI  ++       A+ LF QM                             
Sbjct: 91  SIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHC 150

Query: 384 --VNKDIVTW---------NTMIAGYAQIRQ---------MDDAVKIFEEMGK-RRNTVS 422
             ++ ++  W         N +++ Y              M  A K+F+E    RR+  +
Sbjct: 151 QQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPA 210

Query: 423 WNALISGFLQNE-------------------------------FHLDALKIFVLMTQEGK 451
           W  +I+G+++N+                               F+ +A  +   M   G 
Sbjct: 211 WTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGI 270

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIK-----SGYVNDLFVGNSLITMYAKCGRI 506
           + D  T    +SA ++     +GRQ+H   ++     SG+   L V N+LIT+Y +CG++
Sbjct: 271 QLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFV-LSVNNALITLYTRCGKL 329

Query: 507 QNAELLFKDADPVDVISWNS-------------------------------LIAGYAING 535
             A  +F      D++SWN+                               +I+G A NG
Sbjct: 330 VEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNG 389

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLK------------------ 577
              E +KLF +M +EG+ P    + G +++CS +G +D G +                  
Sbjct: 390 FGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGN 449

Query: 578 ----------LFECMTEVYAIEPLVEHYA--CMIDLLSRAGRLDEAFEMVKGM---KIKP 622
                     L E    V+   P V+  +   MI  L++ G   +A ++ + M    I P
Sbjct: 450 ALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILP 509

Query: 623 NAGIWGTLLGACRMHQNIKLGRIAVEKLS---ELEPQKTSCYALLSNMHAEAGRWDEVEK 679
           +   + T+L AC     +K GR   + +     + P++   Y+ L ++   AG + E + 
Sbjct: 510 DRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDH-YSRLIDLLCRAGMFSEAKN 568

Query: 680 VRVSM 684
           V  SM
Sbjct: 569 VTESM 573



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 157/331 (47%), Gaps = 27/331 (8%)

Query: 11  KGSYVFNQNKK-ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLF 69
            G +V + N   IT   + G++ EA ++F +M  K+ V++N+++S      R+ +A  +F
Sbjct: 308 SGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIF 367

Query: 70  EQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELE 125
            +MP R+L++W  MI+G   N   +E  +LF++M      P  +++A  I   +  G L+
Sbjct: 368 REMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLD 427

Query: 126 KARELFD---LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYT 182
             ++L      L +    +  NA++  Y++ G    A  +   MP  + VSWN+M++   
Sbjct: 428 NGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALA 487

Query: 183 KNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKI-------PEQ 231
           ++G    A + +E M + D+    +++  +L        +     +F  +       PE+
Sbjct: 488 QHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEE 547

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQ----IEEAARL 286
           +   +  ++    R G   EA+ + + MP       W A++A     G     I+ A RL
Sbjct: 548 D--HYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRL 605

Query: 287 FIEMPERNPVSWTTMIDGYVRIAKLDEARRL 317
              MP+++  ++ ++ + Y  + + DE  R+
Sbjct: 606 LELMPQQDG-TYISLSNMYAALGQWDEVARV 635



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 152/298 (51%), Gaps = 23/298 (7%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF 109
           N++I+ Y + G++ +AR++F++MP ++LVSWN++++G ++  +++EA  +F +M    L 
Sbjct: 317 NALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLL 376

Query: 110 SWALMITCYTRKGELEKARELFDLLPNKEDTAC---WNAMVAGYAKIGNYNEAKKLLDAM 166
           +W +MI+   + G  E+  +LF+ +  +    C   +   +A  + +G+ +  ++L   +
Sbjct: 377 TWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQI 436

Query: 167 ----PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAW 222
                  ++   N++++ Y++ G +  A   F  M   D VSWN M+    +      A 
Sbjct: 437 IQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAI 496

Query: 223 KFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA-----WNAMIAA 273
           + ++K+ ++++    ++++T+LS  +  G + E R  FD M +   +      ++ +I  
Sbjct: 497 QLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRLIDL 556

Query: 274 YVQRGQIEEAARLFIEMP-ERNPVSWTTM-----IDGYVRIAKLDEARRLLDQMPYKN 325
             + G   EA  +   MP E     W  +     I G + +  +  A RLL+ MP ++
Sbjct: 557 LCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELG-IQAADRLLELMPQQD 613



 Score = 45.4 bits (106), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 2/114 (1%)

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
           A L+     R +H   + SG+     + N LI  Y K   I  A  LF      D+++  
Sbjct: 7   AQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAAT 66

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
           ++++ Y+  GN   A +LF    M     D V++  +++A SH       L+LF
Sbjct: 67  TMLSAYSAAGNIKLAHQLFNATPMS--IRDTVSYNAMITAFSHSHDGHAALQLF 118


>gi|356557876|ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial-like [Glycine max]
          Length = 912

 Score =  369 bits (948), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 217/606 (35%), Positives = 328/606 (54%), Gaps = 26/606 (4%)

Query: 114 MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS 173
           +I  Y ++G ++ A+ LFD  P     +C N MV GYAK G  + A+KL D MP K  VS
Sbjct: 310 LINMYAKRGSIKDAQLLFDACPTLNPISC-NIMVCGYAKAGQLDNARKLFDIMPDKGCVS 368

Query: 174 WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML-------DGYVELDDLDSAWKFFQ 226
           + +M+ G  +N     A + F+ M    VV  +L L         + E+ +         
Sbjct: 369 YTTMIMGLVQNECFREALEVFKDMRSDGVVPNDLTLVNVIYACSHFGEILNCRMIHAIAI 428

Query: 227 KIPEQNVVSWVT-MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAAR 285
           K+  + +V   T ++  Y     + EARRLFD+MP  N+V+WN M+  Y + G ++ A  
Sbjct: 429 KLFVEGLVLVSTNLMRAYCLCSGVGEARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMARE 488

Query: 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
           LF  +P+++ +SW TMIDGY+ + +L EA  +   M    +A    ++   V        
Sbjct: 489 LFERVPDKDVISWGTMIDGYILMNRLHEALVMYRAMLRSGLALNEILVVNLVS--ACGRL 546

Query: 346 NQIFDKIGTHDVV------CWN----VMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMI 395
           N I D    H +V      C+N     +I  YA CG MD A   F       + +WN ++
Sbjct: 547 NAIGDGWQLHGMVVKKGFDCYNFIQTTIIHFYAACGMMDLACLQFEVGAKDHLESWNALV 606

Query: 396 AGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADH 455
           +G+ + R +D A KIF++M   R+  SW+ +ISG+ Q +    AL++F  M   G K + 
Sbjct: 607 SGFIKNRMVDQARKIFDDM-PERDVFSWSTMISGYAQTDQSRIALELFHKMVASGIKPNE 665

Query: 456 STLACALSACAHLAALQLGRQIH-HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
            T+    SA A L  L+ GR  H ++  +S  +ND     +LI MYAKCG I +A   F 
Sbjct: 666 VTMVSVFSAIATLGTLKEGRWAHEYICNESIPLNDNLRA-ALIDMYAKCGSINSALQFFN 724

Query: 515 DA--DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
                   V  WN++I G A +G+A+  + +F +M    + P+P+TFIGVLSAC H GLV
Sbjct: 725 QIRDKTFSVSPWNAIICGLASHGHASMCLDVFSDMQRYNIKPNPITFIGVLSACCHAGLV 784

Query: 573 DGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLG 632
           + G ++F  M   Y +EP ++HY CM+DLL RAG L+EA EM++ M +K +  IWGTLL 
Sbjct: 785 EPGRRIFRIMKSAYNVEPDIKHYGCMVDLLGRAGLLEEAEEMIRSMPMKADIVIWGTLLA 844

Query: 633 ACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQ 692
           ACR H ++ +G  A E L+ L P       LLSN++A+AGRW++V  VR +++    ++ 
Sbjct: 845 ACRTHGDVNIGERAAESLAGLAPSHGGGKVLLSNIYADAGRWEDVSLVRRAIQNQRMERM 904

Query: 693 PGCSWI 698
           PGCS +
Sbjct: 905 PGCSGV 910



 Score =  192 bits (489), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 156/603 (25%), Positives = 267/603 (44%), Gaps = 98/603 (16%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S  F QN  I    K G +++A  +F      N ++ N M+  YAK G++++ARKLF+ M
Sbjct: 302 SNTFIQNSLINMYAKRGSIKDAQLLFDACPTLNPISCNIMVCGYAKAGQLDNARKLFDIM 361

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKAR 128
           P +  VS+ +MI G + N+  +EA E+F  M      P+  +   +I   +  GE+   R
Sbjct: 362 PDKGCVSYTTMIMGLVQNECFREALEVFKDMRSDGVVPNDLTLVNVIYACSHFGEILNCR 421

Query: 129 EL----FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
            +      L          N M A Y       EA++L D MP  N+VSWN ML+GY K 
Sbjct: 422 MIHAIAIKLFVEGLVLVSTNLMRA-YCLCSGVGEARRLFDRMPEVNLVSWNVMLNGYAKA 480

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ----------KIPEQNVV 234
           G + +A + FE + ++DV+SW  M+DGY+ ++ L  A   ++          +I   N+V
Sbjct: 481 GLVDMARELFERVPDKDVISWGTMIDGYILMNRLHEALVMYRAMLRSGLALNEILVVNLV 540

Query: 235 S-----------W------------------VTMLSGYARNGRMLEARRLFDQMPIRNVV 265
           S           W                   T++  YA  G M  A   F+     ++ 
Sbjct: 541 SACGRLNAIGDGWQLHGMVVKKGFDCYNFIQTTIIHFYAACGMMDLACLQFEVGAKDHLE 600

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           +WNA+++ +++   +++A ++F +MPER+  SW+TMI GY +  +   A  L  +M    
Sbjct: 601 SWNALVSGFIKNRMVDQARKIFDDMPERDVFSWSTMISGYAQTDQSRIALELFHKMVASG 660

Query: 326 IAA-QTAMIS--------GYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
           I   +  M+S        G ++  R        + I  +D +    +I  YA+CG ++ A
Sbjct: 661 IKPNEVTMVSVFSAIATLGTLKEGRWAHEYICNESIPLNDNL-RAALIDMYAKCGSINSA 719

Query: 377 INLFRQMVNK--DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
           +  F Q+ +K   +  WN +I G A        + +F +M +R N               
Sbjct: 720 LQFFNQIRDKTFSVSPWNAIICGLASHGHASMCLDVFSDM-QRYNI-------------- 764

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY--VNDLFV 492
                            K +  T    LSAC H   ++ GR+I  + +KS Y    D+  
Sbjct: 765 -----------------KPNPITFIGVLSACCHAGLVEPGRRIFRI-MKSAYNVEPDIKH 806

Query: 493 GNSLITMYAKCGRIQNAELLFKDAD-PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
              ++ +  + G ++ AE + +      D++ W +L+A    +G+     +  E +   G
Sbjct: 807 YGCMVDLLGRAGLLEEAEEMIRSMPMKADIVIWGTLLAACRTHGDVNIGERAAESLA--G 864

Query: 552 VAP 554
           +AP
Sbjct: 865 LAP 867



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 120/433 (27%), Positives = 199/433 (45%), Gaps = 80/433 (18%)

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
           N    N++I  Y +RG I++A  LF   P  NP+S   M+ GY +  +LD AR+L D MP
Sbjct: 303 NTFIQNSLINMYAKRGSIKDAQLLFDACPTLNPISCNIMVCGYAKAGQLDNARKLFDIMP 362

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIF-----DKIGTHDVVCWNV--------------- 362
            K   + T MI G VQN+   EA ++F     D +  +D+   NV               
Sbjct: 363 DKGCVSYTTMIMGLVQNECFREALEVFKDMRSDGVVPNDLTLVNVIYACSHFGEILNCRM 422

Query: 363 -------------------MIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQ 403
                              +++ Y  C  + EA  LF +M   ++V+WN M+ GYA+   
Sbjct: 423 IHAIAIKLFVEGLVLVSTNLMRAYCLCSGVGEARRLFDRMPEVNLVSWNVMLNGYAKAGL 482

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGF-LQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
           +D A ++FE +   ++ +SW  +I G+ L N  H +AL ++  M + G   +   +   +
Sbjct: 483 VDMARELFERV-PDKDVISWGTMIDGYILMNRLH-EALVMYRAMLRSGLALNEILVVNLV 540

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG------------------ 504
           SAC  L A+  G Q+H + +K G+    F+  ++I  YA CG                  
Sbjct: 541 SACGRLNAIGDGWQLHGMVVKKGFDCYNFIQTTIIHFYAACGMMDLACLQFEVGAKDHLE 600

Query: 505 -------------RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
                         +  A  +F D    DV SW+++I+GYA    +  A++LF +MV  G
Sbjct: 601 SWNALVSGFIKNRMVDQARKIFDDMPERDVFSWSTMISGYAQTDQSRIALELFHKMVASG 660

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFE--CMTEVYAIEPLVEHY-ACMIDLLSRAGRL 608
           + P+ VT + V SA + +G +  G    E  C   +    PL ++  A +ID+ ++ G +
Sbjct: 661 IKPNEVTMVSVFSAIATLGTLKEGRWAHEYICNESI----PLNDNLRAALIDMYAKCGSI 716

Query: 609 DEAFEMVKGMKIK 621
           + A +    ++ K
Sbjct: 717 NSALQFFNQIRDK 729



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 135/321 (42%), Gaps = 77/321 (23%)

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
           + N   Q ++I+ Y +   + +A  +FD   T + +  N+M+ GYA+ G++D A  LF  
Sbjct: 301 HSNTFIQNSLINMYAKRGSIKDAQLLFDACPTLNPISCNIMVCGYAKAGQLDNARKLFDI 360

Query: 383 MVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI 442
           M +K  V++ TMI G                                 +QNE   +AL++
Sbjct: 361 MPDKGCVSYTTMIMG--------------------------------LVQNECFREALEV 388

Query: 443 FVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK------------------- 483
           F  M  +G   +  TL   + AC+H   +   R IH +AIK                   
Sbjct: 389 FKDMRSDGVVPNDLTLVNVIYACSHFGEILNCRMIHAIAIKLFVEGLVLVSTNLMRAYCL 448

Query: 484 ---SGYVNDLF---------VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGY 531
               G    LF           N ++  YAK G +  A  LF+     DVISW ++I GY
Sbjct: 449 CSGVGEARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMIDGY 508

Query: 532 AINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL--------FECMT 583
            +     EA+ ++  M+  G+A + +  + ++SAC  +  +  G +L        F+C  
Sbjct: 509 ILMNRLHEALVMYRAMLRSGLALNEILVVNLVSACGRLNAIGDGWQLHGMVVKKGFDCYN 568

Query: 584 EVYAIEPLVEHY--AC-MIDL 601
               I+  + H+  AC M+DL
Sbjct: 569 ---FIQTTIIHFYAACGMMDL 586



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 38/164 (23%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           +SA  + ++   GRQ+H L +K G  ++ F+ NSLI MYAK G I++A+LLF     ++ 
Sbjct: 276 VSALKYCSSSSQGRQLHSLVLKLGLHSNTFIQNSLINMYAKRGSIKDAQLLFDACPTLNP 335

Query: 522 ISWNSLIAGYAING---NA----------------------------TEAIKLFEEMVME 550
           IS N ++ GYA  G   NA                             EA+++F++M  +
Sbjct: 336 ISCNIMVCGYAKAGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFKDMRSD 395

Query: 551 GVAPDPVTFIGVLSACSHVGLVDGGLKLFEC-MTEVYAIEPLVE 593
           GV P+ +T + V+ ACSH G      ++  C M    AI+  VE
Sbjct: 396 GVVPNDLTLVNVIYACSHFG------EILNCRMIHAIAIKLFVE 433


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  369 bits (948), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 211/647 (32%), Positives = 347/647 (53%), Gaps = 60/647 (9%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----E 199
           N ++  Y   G+ NEA++L D   +K++VSWN M+SGY   G    A   F  M+    E
Sbjct: 83  NTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLE 142

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT----MLSGYARNGRMLEARRL 255
            D  ++  +L        L+   +   ++ E  + +  T    ++S YA+ G + +ARR+
Sbjct: 143 PDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRV 202

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PERNPVSWTTMIDGYVRIA 309
           FD M  R+ V+W  +  AY + G  +E+ + +  M      P R  +++  ++     +A
Sbjct: 203 FDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSR--ITYMNVLSACGSLA 260

Query: 310 KLDEARRLLDQM----PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIK 365
            L++ +++  Q+     + ++   TA+   Y++   + +A ++F+ +   DV+ WN MI 
Sbjct: 261 ALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIG 320

Query: 366 GYAQCGRMDEAINLFRQM----VNKDIVTW------------------------------ 391
           G    G+++EA  +F +M    V  D VT+                              
Sbjct: 321 GLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVS 380

Query: 392 -----NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446
                N +I  Y++   M DA ++F+ M KR + VSW AL+ G+      +++   F  M
Sbjct: 381 DVRFGNALINMYSKAGSMKDARQVFDRMPKR-DVVSWTALVGGYADCGQVVESFSTFKKM 439

Query: 447 TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI 506
            Q+G +A+  T  C L AC++  AL+ G++IH   +K+G   DL V N+L++MY KCG +
Sbjct: 440 LQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSV 499

Query: 507 QNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
           ++A  + +     DV++WN+LI G A NG   EA++ FE M  E + P+  TF+ V+SAC
Sbjct: 500 EDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSAC 559

Query: 567 SHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGI 626
               LV+ G + F  M + Y I P  +HYACM+D+L+RAG L EA +++  M  KP+A +
Sbjct: 560 RVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAM 619

Query: 627 WGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEG 686
           WG LL ACR H N+++G  A E+  +LEPQ    Y  LS ++A AG W +V K+R  M+ 
Sbjct: 620 WGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKE 679

Query: 687 SGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
            G +K+PG SWIEV  ++H+F++GD    RT EI + L+ L  QI++
Sbjct: 680 RGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSELEALTKQIKS 726



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 154/584 (26%), Positives = 271/584 (46%), Gaps = 75/584 (12%)

Query: 21  KITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSW 80
           K   L    +V E I  F    + N    N+++  Y   G VN+AR+LF++   +++VSW
Sbjct: 56  KAKDLAVGKQVHEHILRFGM--KPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSW 113

Query: 81  NSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPN 136
           N MI+GY H    +EA  LF  M      PD F++  +++  +    L   RE+   +  
Sbjct: 114 NVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVME 173

Query: 137 ---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
                +    NA+++ YAK G+  +A+++ DAM S++ VSW ++   Y ++G    + K 
Sbjct: 174 AGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKT 233

Query: 194 FEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG----YAR 245
           + AM +  V    +++  +L     L  L+   +   +I E    S V + +     Y +
Sbjct: 234 YHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIK 293

Query: 246 NGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PERNPVSWT 299
            G + +AR +F+ +P R+V+AWN MI   V  GQ+EEA  +F  M      P+R  V++ 
Sbjct: 294 CGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDR--VTYL 351

Query: 300 TMIDGYVRIAKLD-----EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
            ++    R   L       AR + D +   ++    A+I+ Y +   M +A Q+FD++  
Sbjct: 352 AILSACARPGGLACGKEIHARAVKDGL-VSDVRFGNALINMYSKAGSMKDARQVFDRMPK 410

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK---------------------------- 386
            DVV W  ++ GYA CG++ E+ + F++M+ +                            
Sbjct: 411 RDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEI 470

Query: 387 -----------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEF 435
                      D+   N +++ Y +   ++DA+++ E M   R+ V+WN LI G  QN  
Sbjct: 471 HAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMST-RDVVTWNTLIGGLAQNGR 529

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG-RQIHHLAIKSGYVNDLFVGN 494
            L+AL+ F +M  E  + + +T    +SAC     ++ G RQ   +    G V       
Sbjct: 530 GLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYA 589

Query: 495 SLITMYAKCGRIQNAE--LLFKDADPVDVISWNSLIAGYAINGN 536
            ++ + A+ G +  AE  +L     P   + W +L+A    +GN
Sbjct: 590 CMVDILARAGHLGEAEDVILTMPFKPSAAM-WGALLAACRAHGN 632



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 164/369 (44%), Gaps = 51/369 (13%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM------ 72
           N  I+   K G V +A ++F  M+ ++ V++ ++  AYA++G   ++ K +  M      
Sbjct: 184 NALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVR 243

Query: 73  PQR----NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAR 128
           P R    N++S    +A      ++    ++ +     D+     +   Y + G ++ AR
Sbjct: 244 PSRITYMNVLSACGSLAALEKGKQIHA--QIVESEHHSDVRVSTALTKMYIKCGAVKDAR 301

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKN 184
           E+F+ LPN+ D   WN M+ G    G   EA  +   M  + +    V++ ++LS   + 
Sbjct: 302 EVFECLPNR-DVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARP 360

Query: 185 GEMHLASKFFEAMEERDVVS----WNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
           G +    +      +  +VS     N +++ Y +   +  A + F ++P+++VVSW  ++
Sbjct: 361 GGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALV 420

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVA-------------------WNAMIAAYVQRGQIE 281
            GYA  G+++E+   F +M  + V A                   W   I A V +    
Sbjct: 421 GGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVK---- 476

Query: 282 EAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKR 341
             A +F ++   N      ++  Y +   +++A R+ + M  +++     +I G  QN R
Sbjct: 477 --AGIFADLAVAN-----ALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGR 529

Query: 342 MDEANQIFD 350
             EA Q F+
Sbjct: 530 GLEALQKFE 538



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 140/277 (50%), Gaps = 30/277 (10%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF 109
           N++I+ Y+K G + DAR++F++MP+R++VSW +++ GY    +V E+   F KM +  + 
Sbjct: 386 NALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVE 445

Query: 110 SWALMITCYTRKGE----LEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKL 162
           +  +   C  +       L+  +E+   +       D A  NA+++ Y K G+  +A ++
Sbjct: 446 ANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRV 505

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD----------VVSW----NLM 208
            + M ++++V+WN+++ G  +NG    A + FE M+  +          V+S     NL+
Sbjct: 506 SEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLV 565

Query: 209 LDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA-W 267
            +G  +   +    K +  +P +    +  M+   AR G + EA  +   MP +   A W
Sbjct: 566 EEGRRQFASMR---KDYGIVPTEK--HYACMVDILARAGHLGEAEDVILTMPFKPSAAMW 620

Query: 268 NAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTTM 301
            A++AA    G +   E+AA   +++  +N  ++ ++
Sbjct: 621 GALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSL 657



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 95/196 (48%), Gaps = 10/196 (5%)

Query: 442 IFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYA 501
           +   + Q+G + D       L +C     L +G+Q+H   ++ G   ++++ N+L+ +Y 
Sbjct: 31  VLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYV 90

Query: 502 KCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIG 561
            CG +  A  LF       V+SWN +I+GYA  G   EA  LF  M  EG+ PD  TF+ 
Sbjct: 91  HCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVS 150

Query: 562 VLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYA----CMIDLLSRAGRLDEAFEMVKG 617
           +LSACS    ++ G ++      V  +E  + + A     +I + ++ G + +A  +   
Sbjct: 151 ILSACSSPAALNWGREV-----HVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDA 205

Query: 618 MKIKPNAGIWGTLLGA 633
           M  +     W TL GA
Sbjct: 206 MASRDEVS-WTTLTGA 220



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/189 (28%), Positives = 90/189 (47%), Gaps = 14/189 (7%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR----NLVSWNS 82
           K G VE+AI++   MS ++ VT+N++I   A+NGR  +A + FE M       N  ++ +
Sbjct: 495 KCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVN 554

Query: 83  MIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARELFDLLPNK 137
           +++     + V+E R  F  M +     P    +A M+    R G L +A ++   +P K
Sbjct: 555 VMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFK 614

Query: 138 EDTACWNAMVAGYAKIGNY----NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
              A W A++A     GN       A++ L   P +N  ++ S+   Y   G     +K 
Sbjct: 615 PSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEP-QNAGTYVSLSFIYAAAGMWRDVAKL 673

Query: 194 FEAMEERDV 202
            + M+ER V
Sbjct: 674 RKLMKERGV 682


>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  369 bits (948), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 235/759 (30%), Positives = 399/759 (52%), Gaps = 92/759 (12%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLH----------------NDKVKE 95
           +I+AYAKNG +  A+ L + M +++L S  ++I GY H                + ++++
Sbjct: 234 LINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIED 293

Query: 96  ARELFDKMFRPDLFSWALMITCYTRKG--ELEKARELFDLLPNKEDTACWNAMVAGYAKI 153
           A+  FD+M   ++ SW  +I+ Y + G   +  AR +FD + ++ + A W+ M++GY ++
Sbjct: 294 AKRAFDEMEEKNVISWTSLISGYAKHGYGHMAHARYVFDEMRHRNE-ASWSTMLSGYVRV 352

Query: 154 GNYNEAKKLLDAM------PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL 207
           G Y EA  L   M      P+  +V+  S+++  +++G M  A + F+      VV   +
Sbjct: 353 GLYEEAVGLFCQMWGLGVEPNGFMVA--SLITACSRSGYM--ADEGFQV--HGFVVKTGI 406

Query: 208 MLDGYV---------ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
           + D YV          +  + +A K F+++P+ NVVSW +++ GY+ +G   E   ++ +
Sbjct: 407 LGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQR 466

Query: 259 MP------------------------------IRNVVAW---------NAMIAAYVQRGQ 279
           M                               + +++ +         N++I+ +     
Sbjct: 467 MRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSS 526

Query: 280 IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY-KNIAAQTAMISGYVQ 338
           +EEA  +F  M E + +SW  MI  Y       E+ R    M +  N    T + S    
Sbjct: 527 VEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSV 586

Query: 339 NKRMDE------ANQIFDKIGTHDVVC-WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTW 391
              +D        + +  K+G    VC  N ++  Y++ GR ++A  +F+ M  +D+++W
Sbjct: 587 CSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISW 646

Query: 392 NTMIAGYAQIRQMDDAVKIFEE---MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
           N+M+A Y Q  +  D +KI  E   MGK  + V+WNALI G  +NE   +A+K + L+ +
Sbjct: 647 NSMMACYVQDGKCLDGLKILAELLQMGKP-DRVTWNALIGGHAENEEPNEAVKAYKLIRE 705

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
           +G  A++ T+  +L+A A+LA L+ G+Q+H L IK G+ +DL V N+ + MY KCG + +
Sbjct: 706 KGIPANYITMV-SLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHD 764

Query: 509 AELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
              +         +SWN LI+ +A +G   +A + F EM+  G  PD VTF+ +LSAC+H
Sbjct: 765 VLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNH 824

Query: 569 VGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWG 628
            GLVD GL  ++ MT  + + P +EH  C+IDLL R+GRL  A   +K M + PN   W 
Sbjct: 825 GGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWR 884

Query: 629 TLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688
           +LL ACR+H N++L R   E L EL+P   S Y L SN+ A +G+W++VE +R  M  + 
Sbjct: 885 SLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNN 944

Query: 689 AQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
            +KQP CSW+++K+++H+F  G+    + + I   L  L
Sbjct: 945 IKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGEL 983



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 155/568 (27%), Positives = 259/568 (45%), Gaps = 73/568 (12%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FR 105
           S I +    GR+ +A KL    P R   S    I     + K K+   L         F 
Sbjct: 3   SKIQSACNLGRLAEALKLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFG 62

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDA 165
            DL     +I  Y + G++  AR +FD +P +     W AMV+GY++ G + +A  L   
Sbjct: 63  SDLHLNTKLIIFYVKVGDVIAARNVFDGMPERS-VVSWTAMVSGYSQNGRFEKAFVLFSD 121

Query: 166 MPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFF 225
           M    + + ++++  ++K G+M  AS  F  M ERDVVSWN M+ GY      D ++  F
Sbjct: 122 MRHCGVKANHALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMF 181

Query: 226 QK------IPEQNVVSWV---------------------------------TMLSGYARN 246
           +       +P+   +  V                                  +++ YA+N
Sbjct: 182 RSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKN 241

Query: 247 GRMLEARRLFDQMPIRNVVA----------------WNAMIAAYVQRGQIEEAARLFIEM 290
           G +  A+ L   M  +++ +                 NA+I  Y + G+IE+A R F EM
Sbjct: 242 GSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEM 301

Query: 291 PERNPVSWTTMIDGYVR--IAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQI 348
            E+N +SWT++I GY +     +  AR + D+M ++N A+ + M+SGYV+    +EA  +
Sbjct: 302 EEKNVISWTSLISGYAKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGL 361

Query: 349 FDKIGTHDVVCWNVMIKGY-AQCGR----MDEAINLFRQMVNK----DIVTWNTMIAGYA 399
           F ++    V     M+      C R     DE   +   +V      D+     ++  Y 
Sbjct: 362 FCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYG 421

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
            I  + +A K+FEEM    N VSW +L+ G+  +    + L ++  M QEG   + +T A
Sbjct: 422 SIGLVYNAQKLFEEM-PDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFA 480

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
              S+C  L    LG Q+    I+ G+ + + V NSLI+M++    ++ A  +F   +  
Sbjct: 481 TVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNEC 540

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEM 547
           D+ISWN++I+ YA +G   E+++ F  M
Sbjct: 541 DIISWNAMISAYAHHGLCRESLRCFHWM 568



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 124/460 (26%), Positives = 227/460 (49%), Gaps = 64/460 (13%)

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
           YV++ D+ +A   F  +PE++VVSW  M+SGY++NGR  +A  LF  M    V A +A++
Sbjct: 75  YVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANHALV 134

Query: 272 AAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA----------------- 314
             + + G++E+A+ LF  M ER+ VSW  MI GY      D++                 
Sbjct: 135 DFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCY 194

Query: 315 ---------------------RRLLDQMPYKNIAAQTA-MISGYVQNKRMDEANQIFDKI 352
                                  ++ Q+ Y +    T  +I+ Y +N  +  A  +   +
Sbjct: 195 TLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGM 254

Query: 353 GTHDVVCWNVMIKG----------------YAQCGRMDEAINLFRQMVNKDIVTWNTMIA 396
              D+     +I G                YA+ G +++A   F +M  K++++W ++I+
Sbjct: 255 LKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLIS 314

Query: 397 GYAQ--IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
           GYA+     M  A  +F+EM + RN  SW+ ++SG+++   + +A+ +F  M   G + +
Sbjct: 315 GYAKHGYGHMAHARYVFDEM-RHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPN 373

Query: 455 HSTLACALSACAHLAAL-QLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
              +A  ++AC+    +   G Q+H   +K+G + D++VG +L+  Y   G + NA+ LF
Sbjct: 374 GFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLF 433

Query: 514 KDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVD 573
           ++    +V+SW SL+ GY+ +GN  E + +++ M  EGV+ +  TF  V S+C   GL++
Sbjct: 434 EEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSC---GLLE 490

Query: 574 GGLKLFECMTEV--YAIEPLVEHYACMIDLLSRAGRLDEA 611
             +  ++ +  +  Y  E  V     +I + S    ++EA
Sbjct: 491 DQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEA 530



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 121/416 (29%), Positives = 208/416 (50%), Gaps = 32/416 (7%)

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV 358
           T +I  YV++  +  AR + D MP +++ + TAM+SGY QN R ++A  +F  +    V 
Sbjct: 69  TKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVK 128

Query: 359 CWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---G 415
             + ++  +++CG+M++A  LF  M+ +D+V+WN MI GYA     DD+  +F  M   G
Sbjct: 129 ANHALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGG 188

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
              +  +  +++    +    + A +I  ++TQ G  +        ++A A   +L+  +
Sbjct: 189 LVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAK 248

Query: 476 QIH----------HLAIKSGYVND--LFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
            +             A+ +GY ++    +GN+LI MYAK G I++A+  F + +  +VIS
Sbjct: 249 DLRKGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVIS 308

Query: 524 WNSLIAGYAIN--GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC 581
           W SLI+GYA +  G+   A  +F+EM     A    ++  +LS    VGL +  + LF C
Sbjct: 309 WTSLISGYAKHGYGHMAHARYVFDEMRHRNEA----SWSTMLSGYVRVGLYEEAVGLF-C 363

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRL-DEAFEMVKGMKIKPNAGIWGTL-LGACRMHQN 639
                 +EP     A +I   SR+G + DE F+ V G  +K   GI G + +G   +H  
Sbjct: 364 QMWGLGVEPNGFMVASLITACSRSGYMADEGFQ-VHGFVVK--TGILGDVYVGTALVHFY 420

Query: 640 IKLGRI--AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKV--RVSMEG-SGAQ 690
             +G +  A +   E+       +  L   ++++G   EV  V  R+  EG SG Q
Sbjct: 421 GSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQ 476



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 160/338 (47%), Gaps = 28/338 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFE---QMPQR 75
           N  +T   ++GR E+A  +F  M++++ +++NSM++ Y ++G+  D  K+     QM + 
Sbjct: 616 NTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKP 675

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELF 131
           + V+WN++I G+  N++  EA + + K+ R    P  +   + +        LE+ ++L 
Sbjct: 676 DRVTWNALIGGHAENEEPNEAVKAY-KLIREKGIPANYITMVSLAATANLAVLEEGQQLH 734

Query: 132 DL---LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
            L   L  + D    NA +  Y K G  ++  K+L    +++ +SWN ++S + ++G   
Sbjct: 735 GLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQ 794

Query: 189 LASKFFEAM----EERDVVSWNLMLD-----GYVE--LDDLDSAWKFFQKIPEQNVVSWV 237
            A + F  M     + D V++  +L      G V+  L   DS  + F   P   +   V
Sbjct: 795 KARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFP--GIEHCV 852

Query: 238 TMLSGYARNGRMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQIEEA---ARLFIEMPER 293
            ++    R+GR+  A     +MP+  N +AW +++AA    G +E A   A   +E+   
Sbjct: 853 CIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPS 912

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
           +  ++    +      K ++   L  +M   NI  Q A
Sbjct: 913 DDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPA 950



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 141/319 (44%), Gaps = 33/319 (10%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFD--- 101
           N    N++++ Y++ GR  DA  +F+ M +R+L+SWNSM+A Y+ + K  +  ++     
Sbjct: 611 NVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELL 670

Query: 102 KMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMV--AGYAKIGNYNEA 159
           +M +PD  +W  +I  +    E  +A + + L+  K   A +  MV  A  A +    E 
Sbjct: 671 QMGKPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSLAATANLAVLEEG 730

Query: 160 KKLLDAMPSKNIVS----WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
           ++L   +      S     N+ +  Y K GEMH   K       R  +SWN+++  +   
Sbjct: 731 QQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARH 790

Query: 216 DDLDSAWKFFQKI----PEQNVVSWVTMLSGYARNGRMLEARRLFDQMP-----IRNVVA 266
                A + F ++    P+ + V++V++LS     G + E    +D M         +  
Sbjct: 791 GCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEH 850

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTM-----IDGYVRIAKLDEARRLLDQ 320
              +I    + G++  A     EMP   N ++W ++     I G + +A+   A  LL+ 
Sbjct: 851 CVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELAR-KTAEHLLEL 909

Query: 321 MP--------YKNIAAQTA 331
            P        Y N+ A + 
Sbjct: 910 DPSDDSAYVLYSNVCATSG 928



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 18/199 (9%)

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
           +ALK   L++    + D S     L  C    A + G  IH   I +G+ +DL +   LI
Sbjct: 16  EALK---LLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLI 72

Query: 498 TMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
             Y K G +  A  +F       V+SW ++++GY+ NG   +A  LF +M   GV  +  
Sbjct: 73  IFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANH- 131

Query: 558 TFIGVLSACSHVGLVDGGLKLFECMTEV-----------YAIEPLVEHYACMIDLLSRAG 606
             +   S C   G ++    LF  M E            YA++   +   CM   + R G
Sbjct: 132 ALVDFHSKC---GKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGG 188

Query: 607 RLDEAFEMVKGMKIKPNAG 625
            + + + +   ++     G
Sbjct: 189 LVPDCYTLGSVLRASAEGG 207


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 183/470 (38%), Positives = 283/470 (60%), Gaps = 4/470 (0%)

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR-GQIEEAARLFIEMPERNPVSWTTMID 303
           R G +  A   F   P +    +N ++A Y +  G++ +A  LF  +P  + VS+ T++ 
Sbjct: 78  RRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLS 137

Query: 304 GYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVM 363
            +      D ARRL   MP +++ +   M+SG  ++  ++EA  +F  +   + V WN M
Sbjct: 138 CHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAM 197

Query: 364 IKGYAQCGRMDEAINLFRQMVNK-DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
           + G+A    M  A   FR    K D V W  M++GY  I  +  A++ FE M   RN VS
Sbjct: 198 VSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAM-PVRNLVS 256

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGK-KADHSTLACALSACAHLAALQLGRQIHHLA 481
           WNA+++G+++N    DAL++F  M +E   + + STL+  L  C++L+AL  G+QIH   
Sbjct: 257 WNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWC 316

Query: 482 IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
           +K     +L VG SL++MY KCG + +A  LF +    DV++WN++I+GYA +G+  EAI
Sbjct: 317 MKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAI 376

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601
            LFE M  EGV P+ +TF+ VL+AC H GL D G++ FE M E+Y IEP V+HY+CM+DL
Sbjct: 377 NLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDL 436

Query: 602 LSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCY 661
           L RAG+L+ A ++++ M  +P+   +GTLL ACR+++N++   +A  KL E +PQ    Y
Sbjct: 437 LCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAY 496

Query: 662 ALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD 711
             L+N++A A +WD+V +VR  M+ +   K PG SWIE+K  +H F S D
Sbjct: 497 VQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSND 546



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/341 (31%), Positives = 170/341 (49%), Gaps = 47/341 (13%)

Query: 120 RKGELEKARELFDLLPNKEDTACWNAMVAGYAK-IGNYNEAKKLLDAMPSKNIVSWNSML 178
           R+G+L  A E F   P K  TA +N ++AGYA+ +G   +A+ L D +P+ + VS+N++L
Sbjct: 78  RRGDLTGAEEAFASTPRKT-TATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLL 136

Query: 179 SGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
           S +  +G+   A + F +M  RDVVSWN M+ G  +   ++ A   F  +P +N VSW  
Sbjct: 137 SCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNA 196

Query: 239 MLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
           M+SG+A +  M  A   F   P + + V W AM++ Y+  G + +A   F  MP RN VS
Sbjct: 197 MVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVS 256

Query: 298 WTTMIDGYVRIAKLDEARRLLDQM------------------------------------ 321
           W  ++ GYV+ +  D+A RL   M                                    
Sbjct: 257 WNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWC 316

Query: 322 ---PY-KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAI 377
              P  +N+   T+++S Y +   +  A ++F ++ T DVV WN MI GYAQ G   EAI
Sbjct: 317 MKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAI 376

Query: 378 NLFRQMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEM 414
           NLF +M ++ +    +T+  ++         D  ++ FE M
Sbjct: 377 NLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGM 417



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 181/368 (49%), Gaps = 39/368 (10%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL 88
           GR+ +A  +F ++   + V+YN+++S +  +G  + AR+LF  MP R++VSWN+M++G  
Sbjct: 112 GRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLS 171

Query: 89  HNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVA 148
            +  V+EA+ +F  M   +  SW  M++ +    ++  A E F   P K D   W AMV+
Sbjct: 172 KSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVS 231

Query: 149 GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL- 207
           GY  IGN  +A +  +AMP +N+VSWN++++GY KN     A + F  M     V  N  
Sbjct: 232 GYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNAS 291

Query: 208 ----MLDGYVELDDLDSAWKFFQ---KIP-EQNVVSWVTMLSGYARNGRMLEARRLFDQM 259
               +L G   L  L    +  Q   K+P  +N+    +++S Y + G +  A +LF +M
Sbjct: 292 TLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEM 351

Query: 260 PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEAR 315
             R+VVAWNAMI+ Y Q G  +EA  LF  M     E N +++  ++   +     D   
Sbjct: 352 HTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGI 411

Query: 316 RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
           R  +            M   Y    R+D                ++ M+    + G+++ 
Sbjct: 412 RCFE-----------GMQELYGIEPRVDH---------------YSCMVDLLCRAGKLER 445

Query: 376 AINLFRQM 383
           A++L R M
Sbjct: 446 AVDLIRSM 453



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 160/339 (47%), Gaps = 43/339 (12%)

Query: 178 LSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE-LDDLDSAWKFFQKIPEQNVVSW 236
           ++   + G++  A + F +   +   ++N +L GY   L  L  A   F +IP  + VS+
Sbjct: 73  VAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSY 132

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
            T+LS +  +G    ARRLF  MP+R+VV+WN M++   + G +EEA  +F+ MP RN V
Sbjct: 133 NTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSV 192

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ-TAMISGYVQNKRMDEANQIFDKIGTH 355
           SW  M+ G+     +  A       P K  A   TAM+SGY+    + +A + F+ +   
Sbjct: 193 SWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVR 252

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMV---------------------------NKDI 388
           ++V WN ++ GY +    D+A+ LFR MV                            K I
Sbjct: 253 NLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQI 312

Query: 389 VTW-------------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEF 435
             W              ++++ Y +   +  A K+F EM   R+ V+WNA+ISG+ Q+  
Sbjct: 313 HQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEM-HTRDVVAWNAMISGYAQHGD 371

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
             +A+ +F  M  EG + +  T    L+AC H      G
Sbjct: 372 GKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFG 410



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 157/328 (47%), Gaps = 56/328 (17%)

Query: 28  SGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGY 87
           SG  + A ++F+ M  ++ V++N+M+S  +K+G V +A+ +F  MP RN VSWN+M++G+
Sbjct: 142 SGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGF 201

Query: 88  LHNDKVKEARELF-DKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
             +  +  A E F +   + D   W  M++ Y   G + KA E F+ +P + +   WNA+
Sbjct: 202 ACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVR-NLVSWNAV 260

Query: 147 VAGYAKIGNYNEAKKLLDAM-------P-------------------------------- 167
           VAGY K  + ++A +L   M       P                                
Sbjct: 261 VAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLP 320

Query: 168 -SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
            S+N+    S++S Y K G++  A K F  M  RDVV+WN M+ GY +  D   A   F+
Sbjct: 321 LSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFE 380

Query: 227 KIPEQNV----VSWVTMLSGYARNGRMLEARRLFDQM-------PIRNVVAWNAMIAAYV 275
           ++ ++ V    +++V +L+     G      R F+ M       P   V  ++ M+    
Sbjct: 381 RMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEP--RVDHYSCMVDLLC 438

Query: 276 QRGQIEEAARLFIEMP-ERNPVSWTTMI 302
           + G++E A  L   MP E +P ++ T++
Sbjct: 439 RAGKLERAVDLIRSMPFEPHPSAYGTLL 466



 Score = 65.1 bits (157), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 145/353 (41%), Gaps = 57/353 (16%)

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQ-IRQMDDAVKIFE 412
           +H      V +    + G +  A   F     K   T+N ++AGYA+ + ++ DA  +F+
Sbjct: 63  SHTCSLSTVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFD 122

Query: 413 EM----------------------GKR--------RNTVSWNALISGFLQNEFHLDALKI 442
            +                      G R        R+ VSWN ++SG  ++    +A  +
Sbjct: 123 RIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAV 182

Query: 443 FVLMTQEGK---KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
           F+ M         A  S  AC+         +    +    A + G   D  +  ++++ 
Sbjct: 183 FLAMPVRNSVSWNAMVSGFACSRD-------MSAAEEWFRNAPEKG---DAVLWTAMVSG 232

Query: 500 YAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG-VAPDPVT 558
           Y   G +  A   F+     +++SWN+++AGY  N +A +A++LF  MV E  V P+  T
Sbjct: 233 YMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNAST 292

Query: 559 FIGVLSACSHVGLVDGGLKLFE-CMTEVYAIEPLVEHYACMIDLLS---RAGRLDEAFEM 614
              VL  CS++  +  G ++ + CM       PL  +      L+S   + G L  A ++
Sbjct: 293 LSSVLLGCSNLSALGFGKQIHQWCMK-----LPLSRNLTVGTSLVSMYCKCGDLSSACKL 347

Query: 615 VKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSE--LEPQKTSCYALLS 665
              M  + +   W  ++     H + K      E++ +  +EP   +  A+L+
Sbjct: 348 FGEMHTR-DVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLT 399



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 68/137 (49%), Gaps = 9/137 (6%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP----QRNL 77
           ++   K G +  A K+F +M  ++ V +N+MIS YA++G   +A  LFE+M     + N 
Sbjct: 332 VSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNW 391

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFD 132
           +++ +++   +H          F+ M       P +  ++ M+    R G+LE+A +L  
Sbjct: 392 ITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIR 451

Query: 133 LLPNKEDTACWNAMVAG 149
            +P +   + +  ++A 
Sbjct: 452 SMPFEPHPSAYGTLLAA 468


>gi|297607983|ref|NP_001061009.2| Os08g0153600 [Oryza sativa Japonica Group]
 gi|255678154|dbj|BAF22923.2| Os08g0153600 [Oryza sativa Japonica Group]
          Length = 551

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 187/491 (38%), Positives = 291/491 (59%), Gaps = 4/491 (0%)

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR-GQIEEAARLFIEMPERNPVSWTTMID 303
           R G +  A   F   P +    +N ++A Y +  G++ +A  LF  +P  + VS+ T++ 
Sbjct: 29  RRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLS 88

Query: 304 GYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVM 363
            +      D ARRL   MP +++ +   M+SG  ++  ++EA  +F  +   + V WN M
Sbjct: 89  CHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAM 148

Query: 364 IKGYAQCGRMDEAINLFRQMVNK-DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
           + G+A    M  A   FR    K D V W  M++GY  I  +  A++ FE M   RN VS
Sbjct: 149 VSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAM-PVRNLVS 207

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGK-KADHSTLACALSACAHLAALQLGRQIHHLA 481
           WNA+++G+++N    DAL++F  M +E   + + STL+  L  C++L+AL  G+QIH   
Sbjct: 208 WNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWC 267

Query: 482 IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
           +K     +L VG SL++MY KCG + +A  LF +    DV++WN++I+GYA +G+  EAI
Sbjct: 268 MKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAI 327

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601
            LFE M  EGV P+ +TF+ VL+AC H GL D G++ FE M E+Y IEP V+HY+CM+DL
Sbjct: 328 NLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDL 387

Query: 602 LSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCY 661
           L RAG+L+ A ++++ M  +P+   +GTLL ACR+++N++   +A  KL E +PQ    Y
Sbjct: 388 LCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAY 447

Query: 662 ALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEIC 721
             L+N++A A +WD+V +VR  M+ +   K PG SWIE+K  +H F S D    +   I 
Sbjct: 448 VQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIH 507

Query: 722 NTLKTLAAQIR 732
             L  LA +++
Sbjct: 508 EKLGQLAERMK 518



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/342 (31%), Positives = 169/342 (49%), Gaps = 47/342 (13%)

Query: 119 TRKGELEKARELFDLLPNKEDTACWNAMVAGYAK-IGNYNEAKKLLDAMPSKNIVSWNSM 177
            R+G+L  A E F   P K  TA +N ++AGYA+ +G   +A+ L D +P+ + VS+N++
Sbjct: 28  VRRGDLTGAEEAFASTPRKT-TATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTL 86

Query: 178 LSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV 237
           LS +  +G+   A + F +M  RDVVSWN M+ G  +   ++ A   F  +P +N VSW 
Sbjct: 87  LSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWN 146

Query: 238 TMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
            M+SG+A +  M  A   F   P + + V W AM++ Y+  G + +A   F  MP RN V
Sbjct: 147 AMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLV 206

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQM----------------------------------- 321
           SW  ++ GYV+ +  D+A RL   M                                   
Sbjct: 207 SWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQW 266

Query: 322 ----PY-KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
               P  +N+   T+++S Y +   +  A ++F ++ T DVV WN MI GYAQ G   EA
Sbjct: 267 CMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEA 326

Query: 377 INLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           INLF +M    V  + +T+  ++         D  ++ FE M
Sbjct: 327 INLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGM 368



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 181/368 (49%), Gaps = 39/368 (10%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL 88
           GR+ +A  +F ++   + V+YN+++S +  +G  + AR+LF  MP R++VSWN+M++G  
Sbjct: 63  GRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLS 122

Query: 89  HNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVA 148
            +  V+EA+ +F  M   +  SW  M++ +    ++  A E F   P K D   W AMV+
Sbjct: 123 KSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVS 182

Query: 149 GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL- 207
           GY  IGN  +A +  +AMP +N+VSWN++++GY KN     A + F  M     V  N  
Sbjct: 183 GYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNAS 242

Query: 208 ----MLDGYVELDDLDSAWKFFQ---KIP-EQNVVSWVTMLSGYARNGRMLEARRLFDQM 259
               +L G   L  L    +  Q   K+P  +N+    +++S Y + G +  A +LF +M
Sbjct: 243 TLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEM 302

Query: 260 PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEAR 315
             R+VVAWNAMI+ Y Q G  +EA  LF  M     E N +++  ++   +     D   
Sbjct: 303 HTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGI 362

Query: 316 RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
           R  +            M   Y    R+D                ++ M+    + G+++ 
Sbjct: 363 RCFE-----------GMQELYGIEPRVDH---------------YSCMVDLLCRAGKLER 396

Query: 376 AINLFRQM 383
           A++L R M
Sbjct: 397 AVDLIRSM 404



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 160/339 (47%), Gaps = 43/339 (12%)

Query: 178 LSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE-LDDLDSAWKFFQKIPEQNVVSW 236
           ++   + G++  A + F +   +   ++N +L GY   L  L  A   F +IP  + VS+
Sbjct: 24  VAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSY 83

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
            T+LS +  +G    ARRLF  MP+R+VV+WN M++   + G +EEA  +F+ MP RN V
Sbjct: 84  NTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSV 143

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ-TAMISGYVQNKRMDEANQIFDKIGTH 355
           SW  M+ G+     +  A       P K  A   TAM+SGY+    + +A + F+ +   
Sbjct: 144 SWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVR 203

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMV---------------------------NKDI 388
           ++V WN ++ GY +    D+A+ LFR MV                            K I
Sbjct: 204 NLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQI 263

Query: 389 VTW-------------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEF 435
             W              ++++ Y +   +  A K+F EM   R+ V+WNA+ISG+ Q+  
Sbjct: 264 HQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEM-HTRDVVAWNAMISGYAQHGD 322

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
             +A+ +F  M  EG + +  T    L+AC H      G
Sbjct: 323 GKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFG 361



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 156/328 (47%), Gaps = 56/328 (17%)

Query: 28  SGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGY 87
           SG  + A ++F+ M  ++ V++N+M+S  +K+G V +A+ +F  MP RN VSWN+M++G+
Sbjct: 93  SGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGF 152

Query: 88  LHNDKVKEARELF-DKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
             +  +  A E F +   + D   W  M++ Y   G + KA E F+ +P + +   WNA+
Sbjct: 153 ACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVR-NLVSWNAV 211

Query: 147 VAGYAKIGNYNEAKKLLDAMP--------------------------------------- 167
           VAGY K  + ++A +L   M                                        
Sbjct: 212 VAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLP 271

Query: 168 -SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
            S+N+    S++S Y K G++  A K F  M  RDVV+WN M+ GY +  D   A   F+
Sbjct: 272 LSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFE 331

Query: 227 KIPEQNV----VSWVTMLSGYARNGRMLEARRLFDQM-------PIRNVVAWNAMIAAYV 275
           ++ ++ V    +++V +L+     G      R F+ M       P   V  ++ M+    
Sbjct: 332 RMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEP--RVDHYSCMVDLLC 389

Query: 276 QRGQIEEAARLFIEMP-ERNPVSWTTMI 302
           + G++E A  L   MP E +P ++ T++
Sbjct: 390 RAGKLERAVDLIRSMPFEPHPSAYGTLL 417



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 145/353 (41%), Gaps = 57/353 (16%)

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQ-IRQMDDAVKIFE 412
           +H      V +    + G +  A   F     K   T+N ++AGYA+ + ++ DA  +F+
Sbjct: 14  SHTCSLSTVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFD 73

Query: 413 EM----------------------GKR--------RNTVSWNALISGFLQNEFHLDALKI 442
            +                      G R        R+ VSWN ++SG  ++    +A  +
Sbjct: 74  RIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAV 133

Query: 443 FVLMTQEGK---KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
           F+ M         A  S  AC+    A         +    A + G   D  +  ++++ 
Sbjct: 134 FLAMPVRNSVSWNAMVSGFACSRDMSA-------AEEWFRNAPEKG---DAVLWTAMVSG 183

Query: 500 YAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG-VAPDPVT 558
           Y   G +  A   F+     +++SWN+++AGY  N +A +A++LF  MV E  V P+  T
Sbjct: 184 YMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNAST 243

Query: 559 FIGVLSACSHVGLVDGGLKLFE-CMTEVYAIEPLVEHYACMIDLLS---RAGRLDEAFEM 614
              VL  CS++  +  G ++ + CM       PL  +      L+S   + G L  A ++
Sbjct: 244 LSSVLLGCSNLSALGFGKQIHQWCMK-----LPLSRNLTVGTSLVSMYCKCGDLSSACKL 298

Query: 615 VKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSE--LEPQKTSCYALLS 665
              M  + +   W  ++     H + K      E++ +  +EP   +  A+L+
Sbjct: 299 FGEMHTR-DVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLT 350



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 68/137 (49%), Gaps = 9/137 (6%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP----QRNL 77
           ++   K G +  A K+F +M  ++ V +N+MIS YA++G   +A  LFE+M     + N 
Sbjct: 283 VSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNW 342

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFD 132
           +++ +++   +H          F+ M       P +  ++ M+    R G+LE+A +L  
Sbjct: 343 ITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIR 402

Query: 133 LLPNKEDTACWNAMVAG 149
            +P +   + +  ++A 
Sbjct: 403 SMPFEPHPSAYGTLLAA 419


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  369 bits (947), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 187/491 (38%), Positives = 291/491 (59%), Gaps = 4/491 (0%)

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR-GQIEEAARLFIEMPERNPVSWTTMID 303
           R G +  A   F   P +    +N ++A Y +  G++ +A  LF  +P  + VS+ T++ 
Sbjct: 29  RRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLS 88

Query: 304 GYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVM 363
            +      D ARRL   MP +++ +   M+SG  ++  ++EA  +F  +   + V WN M
Sbjct: 89  CHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAM 148

Query: 364 IKGYAQCGRMDEAINLFRQMVNK-DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
           + G+A    M  A   FR    K D V W  M++GY  I  +  A++ FE M   RN VS
Sbjct: 149 VSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAM-PVRNLVS 207

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGK-KADHSTLACALSACAHLAALQLGRQIHHLA 481
           WNA+++G+++N    DAL++F  M +E   + + STL+  L  C++L+AL  G+QIH   
Sbjct: 208 WNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWC 267

Query: 482 IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
           +K     +L VG SL++MY KCG + +A  LF +    DV++WN++I+GYA +G+  EAI
Sbjct: 268 MKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAI 327

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601
            LFE M  EGV P+ +TF+ VL+AC H GL D G++ FE M E+Y IEP V+HY+CM+DL
Sbjct: 328 NLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDL 387

Query: 602 LSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCY 661
           L RAG+L+ A ++++ M  +P+   +GTLL ACR+++N++   +A  KL E +PQ    Y
Sbjct: 388 LCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAY 447

Query: 662 ALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEIC 721
             L+N++A A +WD+V +VR  M+ +   K PG SWIE+K  +H F S D    +   I 
Sbjct: 448 VQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIH 507

Query: 722 NTLKTLAAQIR 732
             L  LA +++
Sbjct: 508 EKLGQLAERMK 518



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 170/342 (49%), Gaps = 47/342 (13%)

Query: 119 TRKGELEKARELFDLLPNKEDTACWNAMVAGYAK-IGNYNEAKKLLDAMPSKNIVSWNSM 177
            R+G+L  A E F   P K  TA +N ++AGYA+ +G   +A+ L D +P+ + VS+N++
Sbjct: 28  VRRGDLTGAEEAFASTPRKT-TATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTL 86

Query: 178 LSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV 237
           LS +  +G+   A + F +M  RDVVSWN M+ G  +   ++ A   F  +P +N VSW 
Sbjct: 87  LSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWN 146

Query: 238 TMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
            M+SG+A +  M  A   F   P + + V W AM++ Y+  G + +A   F  MP RN V
Sbjct: 147 AMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLV 206

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQM----------------------------------- 321
           SW  ++ GYV+ +  D+A RL   M                                   
Sbjct: 207 SWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQW 266

Query: 322 ----PY-KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
               P  +N+   T+++S Y +   +  A ++F ++ T DVV WN MI GYAQ G   EA
Sbjct: 267 CMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEA 326

Query: 377 INLFRQMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEM 414
           INLF +M ++ +    +T+  ++         D  ++ FE M
Sbjct: 327 INLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGM 368



 Score =  172 bits (436), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 109/368 (29%), Positives = 181/368 (49%), Gaps = 39/368 (10%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL 88
           GR+ +A  +F ++   + V+YN+++S +  +G  + AR+LF  MP R++VSWN+M++G  
Sbjct: 63  GRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLS 122

Query: 89  HNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVA 148
            +  V+EA+ +F  M   +  SW  M++ +    ++  A E F   P K D   W AMV+
Sbjct: 123 KSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVS 182

Query: 149 GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL- 207
           GY  IGN  +A +  +AMP +N+VSWN++++GY KN     A + F  M     V  N  
Sbjct: 183 GYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNAS 242

Query: 208 ----MLDGYVELDDLDSAWKFFQ---KIP-EQNVVSWVTMLSGYARNGRMLEARRLFDQM 259
               +L G   L  L    +  Q   K+P  +N+    +++S Y + G +  A +LF +M
Sbjct: 243 TLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEM 302

Query: 260 PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEAR 315
             R+VVAWNAMI+ Y Q G  +EA  LF  M     E N +++  ++   +     D   
Sbjct: 303 HTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGI 362

Query: 316 RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
           R  +            M   Y    R+D                ++ M+    + G+++ 
Sbjct: 363 RCFE-----------GMQELYGIEPRVDH---------------YSCMVDLLCRAGKLER 396

Query: 376 AINLFRQM 383
           A++L R M
Sbjct: 397 AVDLIRSM 404



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 160/339 (47%), Gaps = 43/339 (12%)

Query: 178 LSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE-LDDLDSAWKFFQKIPEQNVVSW 236
           ++   + G++  A + F +   +   ++N +L GY   L  L  A   F +IP  + VS+
Sbjct: 24  VAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSY 83

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
            T+LS +  +G    ARRLF  MP+R+VV+WN M++   + G +EEA  +F+ MP RN V
Sbjct: 84  NTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSV 143

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ-TAMISGYVQNKRMDEANQIFDKIGTH 355
           SW  M+ G+     +  A       P K  A   TAM+SGY+    + +A + F+ +   
Sbjct: 144 SWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVR 203

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMV---------------------------NKDI 388
           ++V WN ++ GY +    D+A+ LFR MV                            K I
Sbjct: 204 NLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQI 263

Query: 389 VTW-------------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEF 435
             W              ++++ Y +   +  A K+F EM   R+ V+WNA+ISG+ Q+  
Sbjct: 264 HQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEM-HTRDVVAWNAMISGYAQHGD 322

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
             +A+ +F  M  EG + +  T    L+AC H      G
Sbjct: 323 GKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFG 361



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 156/328 (47%), Gaps = 56/328 (17%)

Query: 28  SGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGY 87
           SG  + A ++F+ M  ++ V++N+M+S  +K+G V +A+ +F  MP RN VSWN+M++G+
Sbjct: 93  SGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGF 152

Query: 88  LHNDKVKEARELF-DKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
             +  +  A E F +   + D   W  M++ Y   G + KA E F+ +P + +   WNA+
Sbjct: 153 ACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVR-NLVSWNAV 211

Query: 147 VAGYAKIGNYNEAKKLLDAMP--------------------------------------- 167
           VAGY K  + ++A +L   M                                        
Sbjct: 212 VAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLP 271

Query: 168 -SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
            S+N+    S++S Y K G++  A K F  M  RDVV+WN M+ GY +  D   A   F+
Sbjct: 272 LSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFE 331

Query: 227 KIPEQNV----VSWVTMLSGYARNGRMLEARRLFDQM-------PIRNVVAWNAMIAAYV 275
           ++ ++ V    +++V +L+     G      R F+ M       P   V  ++ M+    
Sbjct: 332 RMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEP--RVDHYSCMVDLLC 389

Query: 276 QRGQIEEAARLFIEMP-ERNPVSWTTMI 302
           + G++E A  L   MP E +P ++ T++
Sbjct: 390 RAGKLERAVDLIRSMPFEPHPSAYGTLL 417



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 145/353 (41%), Gaps = 57/353 (16%)

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQ-IRQMDDAVKIFE 412
           +H      V +    + G +  A   F     K   T+N ++AGYA+ + ++ DA  +F+
Sbjct: 14  SHTCSLSTVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFD 73

Query: 413 EM----------------------GKR--------RNTVSWNALISGFLQNEFHLDALKI 442
            +                      G R        R+ VSWN ++SG  ++    +A  +
Sbjct: 74  RIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAV 133

Query: 443 FVLMTQEGK---KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
           F+ M         A  S  AC+         +    +    A + G   D  +  ++++ 
Sbjct: 134 FLAMPVRNSVSWNAMVSGFACSRD-------MSAAEEWFRNAPEKG---DAVLWTAMVSG 183

Query: 500 YAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG-VAPDPVT 558
           Y   G +  A   F+     +++SWN+++AGY  N +A +A++LF  MV E  V P+  T
Sbjct: 184 YMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNAST 243

Query: 559 FIGVLSACSHVGLVDGGLKLFE-CMTEVYAIEPLVEHYACMIDLLS---RAGRLDEAFEM 614
              VL  CS++  +  G ++ + CM       PL  +      L+S   + G L  A ++
Sbjct: 244 LSSVLLGCSNLSALGFGKQIHQWCMK-----LPLSRNLTVGTSLVSMYCKCGDLSSACKL 298

Query: 615 VKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSE--LEPQKTSCYALLS 665
              M  + +   W  ++     H + K      E++ +  +EP   +  A+L+
Sbjct: 299 FGEMHTR-DVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLT 350



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 68/137 (49%), Gaps = 9/137 (6%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP----QRNL 77
           ++   K G +  A K+F +M  ++ V +N+MIS YA++G   +A  LFE+M     + N 
Sbjct: 283 VSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNW 342

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFD 132
           +++ +++   +H          F+ M       P +  ++ M+    R G+LE+A +L  
Sbjct: 343 ITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIR 402

Query: 133 LLPNKEDTACWNAMVAG 149
            +P +   + +  ++A 
Sbjct: 403 SMPFEPHPSAYGTLLAA 419


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 210/616 (34%), Positives = 345/616 (56%), Gaps = 54/616 (8%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N ++  YAK G   +A ++ D MP K++ SWN +LSGY K G +  A + FE M E D V
Sbjct: 52  NNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSV 111

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKI------PEQNVVSWV-------------------- 237
           SW  M+ GY ++   ++A   F+++      P Q  ++ V                    
Sbjct: 112 SWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFV 171

Query: 238 -------------TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA 284
                        ++L+ YA++G  + A+ +FD+M +++  +WN MI++++Q G ++ A 
Sbjct: 172 VKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQ 231

Query: 285 RLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM-------PYKNIAAQTAMISGYV 337
             F +M ER+ VSW  MI GY +     EA  +  +M       P K   A        +
Sbjct: 232 VQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANL 291

Query: 338 QNKRMDE---ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ--MVNKDIVTWN 392
           +N ++ +   A+ I  +  T   V  N +I  Y++ G ++ A  +  Q  + N D++ + 
Sbjct: 292 ENLKLGKQIHAHIIRTEFDTFGAVG-NALISMYSKSGGVEIAQKIIEQSMISNLDVIAFT 350

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
            ++ GY ++  ++ A +IF+ + + R+ V+W A+I G++QN F+ DA+++F  M +EG K
Sbjct: 351 ALLDGYVKLGDINPARRIFDSL-RVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPK 409

Query: 453 ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512
            ++ TLA  LS  + LA+L  GRQIH  A +SG  + + V N+LITMYAK G I +A  +
Sbjct: 410 PNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWV 469

Query: 513 FKDAD-PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
           F       D I+W S+I   A +G   EA+ LFE M+  G+ PD +T++GVLSAC+HVGL
Sbjct: 470 FNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGL 529

Query: 572 VDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           V+ G   +  M   + I P   HYACMIDL  RAG L EA   ++ M I+P+   WG+LL
Sbjct: 530 VEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLL 589

Query: 632 GACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQK 691
            +C++H+N++L  +A E+L  +EP+ +  Y+ L+N+++  G+W+    +R SM+  G +K
Sbjct: 590 ASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMKDKGVKK 649

Query: 692 QPGCSWIEVKNQIHTF 707
             G SW+++KN++H F
Sbjct: 650 DQGFSWVQIKNKVHIF 665



 Score =  208 bits (529), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 149/555 (26%), Positives = 266/555 (47%), Gaps = 77/555 (13%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF 109
           N++++ YAK G + DA ++F++MP +++ SWN +++GY    +++EA  +F++M  PD  
Sbjct: 52  NNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSV 111

Query: 110 SWALMITCYTRKGELEKARELF-----DLLPNKEDT------------------------ 140
           SW  MI  Y + G+ E A  +F     D +P  + T                        
Sbjct: 112 SWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFV 171

Query: 141 ---------ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
                    +  N+++  YAK G+   AK + D M  K+  SWN+M+S + ++G + LA 
Sbjct: 172 VKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQ 231

Query: 192 KFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI-----PEQNVVSWVTMLSGYA-- 244
             FE M ERDVVSWN M+ GY +      A   F K+      + +  +  + LS  A  
Sbjct: 232 VQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANL 291

Query: 245 ---RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIE--MPERNPVSWT 299
              + G+ + A  +  +      V  NA+I+ Y + G +E A ++  +  +   + +++T
Sbjct: 292 ENLKLGKQIHAHIIRTEFDTFGAVG-NALISMYSKSGGVEIAQKIIEQSMISNLDVIAFT 350

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
            ++DGYV++  ++ ARR+ D +  +++ A TAMI GYVQN    +A ++F  +       
Sbjct: 351 ALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKP 410

Query: 360 WNVMIKGYAQCGRMDEAINLFRQMV--------NKDIVTWNTMIAGYAQIRQMDDAVKIF 411
            N  +           +++  RQ+            +   N +I  YA+   ++DA  +F
Sbjct: 411 NNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVF 470

Query: 412 EEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAAL 471
             +  +R+T++W ++I    Q+    +AL +F  M + G K DH T    LSAC H+  +
Sbjct: 471 NLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLV 530

Query: 472 QLGRQIHHL--------AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--DV 521
           + GR  ++L           S Y         +I ++ + G +Q A    ++  P+  DV
Sbjct: 531 EQGRSYYNLMQNAHKIIPTPSHYA-------CMIDLFGRAGLLQEAHAFIENM-PIEPDV 582

Query: 522 ISWNSLIAGYAINGN 536
           I+W SL+A   ++ N
Sbjct: 583 IAWGSLLASCKVHKN 597



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 130/465 (27%), Positives = 219/465 (47%), Gaps = 76/465 (16%)

Query: 246 NGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGY 305
            G+ + AR +   + +  V   N ++  Y + G I +A R+F EMP ++  SW  ++ GY
Sbjct: 31  TGKSIHARIIKAGLHL-GVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGY 89

Query: 306 VRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV-------- 357
            +  +L+EA R+ ++MP  +  + TAMI GY Q  + + A  +F ++ + DV        
Sbjct: 90  AKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLT 149

Query: 358 -------------------------------VCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
                                             N ++  YA+ G    A  +F +M  K
Sbjct: 150 NVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLK 209

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV-L 445
              +WNTMI+ + Q   +D A   FE+M   R+ VSWNA+ISG+ Q+ F  +AL IF  +
Sbjct: 210 STSSWNTMISSHMQSGLVDLAQVQFEQM-IERDVVSWNAMISGYNQHGFDREALDIFSKM 268

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
           +     K D  TLA ALSACA+L  L+LG+QIH   I++ +     VGN+LI+MY+K G 
Sbjct: 269 LMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGG 328

Query: 506 IQNAELLFK-----------------------DADPV----------DVISWNSLIAGYA 532
           ++ A+ + +                       D +P           DV++W ++I GY 
Sbjct: 329 VEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYV 388

Query: 533 INGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLV 592
            NG   +A++LF  M+ EG  P+  T   +LS  S +  +D G ++    T       + 
Sbjct: 389 QNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVS 448

Query: 593 EHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMH 637
              A +I + +++G +++A  +   +  K +   W +++ A   H
Sbjct: 449 VSNA-LITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQH 492



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 124/508 (24%), Positives = 231/508 (45%), Gaps = 105/508 (20%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           SY+   N  +    KSG    A  +F +M  K+T ++N+MIS++ ++G V+ A+  FEQM
Sbjct: 178 SYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQM 237

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMF-----RPDLFSWALMITCYTRKGELEKA 127
            +R++VSWN+MI+GY  +   +EA ++F KM      +PD F+ A  ++       L+  
Sbjct: 238 IERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLG 297

Query: 128 RELFDLLPNKE-DT--ACWNAMVAGYAKIGNYNEAKKLLDA--MPSKNIVSWNSMLSGYT 182
           +++   +   E DT  A  NA+++ Y+K G    A+K+++   + + +++++ ++L GY 
Sbjct: 298 KQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYV 357

Query: 183 KNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVT 238
           K G+++ A + F+++  RDVV+W  M+ GYV+      A + F+ +    P+ N  +  T
Sbjct: 358 KLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLAT 417

Query: 239 M-----------------------------------LSGYARNGRMLEARRLFDQMP-IR 262
           M                                   ++ YA++G + +AR +F+ +   R
Sbjct: 418 MLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKR 477

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPER----------------------------- 293
           + + W +MI A  Q G  EEA  LF  M E                              
Sbjct: 478 DTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYY 537

Query: 294 -----------NPVSWTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISGYVQNKR 341
                       P  +  MID + R   L EA   ++ MP + ++ A  ++++    +K 
Sbjct: 538 NLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKN 597

Query: 342 MDEANQIFDK---IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI-----VTWNT 393
           ++ A    ++   I   +   ++ +   Y+ CG+ + A N+ + M +K +      +W  
Sbjct: 598 VELAEVAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSW-V 656

Query: 394 MIAGYAQIRQMDDAVK-----IFEEMGK 416
            I     I  +DD +      I+E M K
Sbjct: 657 QIKNKVHIFGVDDGLHPQRDAIYEMMAK 684


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  369 bits (946), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 187/503 (37%), Positives = 297/503 (59%), Gaps = 2/503 (0%)

Query: 231 QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ-RGQIEEAARLFIE 289
            +VVS    ++ + R   +  AR +F++M +R  V WN M++ Y +  G+++EA  LF +
Sbjct: 71  SDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDK 130

Query: 290 MPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF 349
           +PE + VS+  M+  Y+R   +  A    ++MP K+IA+   +ISG+ QN +M +A  +F
Sbjct: 131 IPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLF 190

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVK 409
             +   + V W+ MI GY + G ++ A  L++ +  K +V    M+ GY +  +++ A +
Sbjct: 191 SVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAER 250

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           IF+ M  + N V+WN++I+G+++N    D LK+F  M +   + +  +L+  L  C++L+
Sbjct: 251 IFQRMAVK-NLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLS 309

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
           AL LGRQ+H L  KS    D     SLI+MY KCG + +A  LF +    DVI+WN++I+
Sbjct: 310 ALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMIS 369

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE 589
           GYA +G   +A+ LF++M    + PD +TF+ V+ AC+H G VD G++ F+ M + + IE
Sbjct: 370 GYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIE 429

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649
               HY C+IDLL RAGRLDEA  ++K M   P+A I+GTLLGACR+H+N+ L   A   
Sbjct: 430 AKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDLAEFAARN 489

Query: 650 LSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLS 709
           L  L+P   + Y  L+N++A   +WD+V KVR  M+     K PG SWIE+K+  H F S
Sbjct: 490 LLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRS 549

Query: 710 GDPKQCRTAEICNTLKTLAAQIR 732
            D        I   L  L  +++
Sbjct: 550 SDRLHPELTSIHKKLNELDGKMK 572



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 118/354 (33%), Positives = 205/354 (57%), Gaps = 14/354 (3%)

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTR-KGELEKARELFDLL 134
           ++VS N  IA ++    ++ AR +F+KM      +W  M++ YT+  G++++A ELFD +
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P + D+  +N M+  Y +      A    + MP K+I SWN+++SG+ +NG+M  A   F
Sbjct: 132 P-EPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLF 190

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
             M E++ VSW+ M+ GYVE  DL++A + ++ +  ++VV    ML+GY + G++  A R
Sbjct: 191 SVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAER 250

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAK 310
           +F +M ++N+V WN+MIA YV+  + E+  ++F  M E     NP+S ++++ G   ++ 
Sbjct: 251 IFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSA 310

Query: 311 LDEAR---RLLDQMPY-KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG 366
           L   R   +L+ + P  K+  A T++IS Y +   +D A ++F ++   DV+ WN MI G
Sbjct: 311 LPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISG 370

Query: 367 YAQCGRMDEAINLFRQMVN----KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
           YAQ G   +A++LF +M N     D +T+  +I        +D  V+ F+ M K
Sbjct: 371 YAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKK 424



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 122/392 (31%), Positives = 213/392 (54%), Gaps = 21/392 (5%)

Query: 42  SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLH-NDKVKEARELF 100
           +  + V+ N  I+++ +   +  AR +FE+M  R  V+WN+M++GY     KVKEA ELF
Sbjct: 69  TASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELF 128

Query: 101 DKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
           DK+  PD  S+ +M+ CY R   ++ A   F+ +P K D A WN +++G+A+ G   +A 
Sbjct: 129 DKIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVK-DIASWNTLISGFAQNGQMQKAF 187

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
            L   MP KN VSW++M+SGY ++G++  A + ++ +  + VV    ML GY++   ++ 
Sbjct: 188 DLFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVEL 247

Query: 221 AWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQI 280
           A + FQ++  +N+V+W +M++GY  N R  +  ++F  M I + V  N +  + V  G  
Sbjct: 248 AERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTM-IESRVRPNPLSLSSVLLGCS 306

Query: 281 EEAA----RLFIEMPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
             +A    R   ++  ++P+S      T++I  Y +   LD A +L  +MP K++    A
Sbjct: 307 NLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNA 366

Query: 332 MISGYVQNKRMDEANQIFDKI--GT--HDVVCWNVMIKGYAQCGRMDEAINLFRQM---- 383
           MISGY Q+    +A  +FDK+  GT   D + +  +I      G +D  +  F+ M    
Sbjct: 367 MISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEF 426

Query: 384 -VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            +    V +  +I    +  ++D+AV + +EM
Sbjct: 427 GIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEM 458



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 113/389 (29%), Positives = 194/389 (49%), Gaps = 42/389 (10%)

Query: 168 SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL-DDLDSAWKFFQ 226
           + ++VS N  ++ + +  ++  A   FE M  R  V+WN ML GY ++   +  A + F 
Sbjct: 70  ASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFD 129

Query: 227 KIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
           KIPE + VS+  ML  Y R+  +  A   F++MP++++ +WN +I+ + Q GQ+++A  L
Sbjct: 130 KIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDL 189

Query: 287 FIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEAN 346
           F  MPE+N VSW+ MI GYV    L+ A  L   +  K++  +TAM++GY++  +++ A 
Sbjct: 190 FSVMPEKNGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAE 249

Query: 347 QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV---------------------- 384
           +IF ++   ++V WN MI GY +  R ++ + +F+ M+                      
Sbjct: 250 RIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLS 309

Query: 385 -----------------NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
                            +KD     ++I+ Y +   +D A K+F EM  R++ ++WNA+I
Sbjct: 310 ALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEM-PRKDVITWNAMI 368

Query: 428 SGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV 487
           SG+ Q+     AL +F  M     K D  T    + AC H   + LG Q      K   +
Sbjct: 369 SGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGI 428

Query: 488 NDLFVGNS-LITMYAKCGRIQNAELLFKD 515
               V  + +I +  + GR+  A  L K+
Sbjct: 429 EAKPVHYTCVIDLLGRAGRLDEAVSLIKE 457



 Score =  192 bits (487), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 214/392 (54%), Gaps = 19/392 (4%)

Query: 10  NKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAK-NGRVNDARKL 68
           +  S V + NK I    ++  +E A  +F +MS + TVT+N+M+S Y K  G+V +A +L
Sbjct: 68  DTASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHEL 127

Query: 69  FEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAR 128
           F+++P+ + VS+N M+  YL +  VK A   F+KM   D+ SW  +I+ + + G+++KA 
Sbjct: 128 FDKIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAF 187

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
           +LF ++P K   + W+AM++GY + G+   A++L   +  K++V   +ML+GY K G++ 
Sbjct: 188 DLFSVMPEKNGVS-WSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVE 246

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYA 244
           LA + F+ M  +++V+WN M+ GYVE    +   K F+ + E     N +S  ++L G +
Sbjct: 247 LAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCS 306

Query: 245 RNGRMLEAR---RLFDQMPI-RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTT 300
               +   R   +L  + P+ ++  A  ++I+ Y + G ++ A +LF+EMP ++ ++W  
Sbjct: 307 NLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNA 366

Query: 301 MIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIGTH- 355
           MI GY +     +A  L D+M    +        A+I        +D   Q F  +    
Sbjct: 367 MISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEF 426

Query: 356 ----DVVCWNVMIKGYAQCGRMDEAINLFRQM 383
                 V +  +I    + GR+DEA++L ++M
Sbjct: 427 GIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEM 458



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 181/339 (53%), Gaps = 23/339 (6%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           +S  V+ A+  F++M  K+  ++N++IS +A+NG++  A  LF  MP++N VSW++MI+G
Sbjct: 148 RSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISG 207

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
           Y+ +  ++ A EL+  +    +     M+T Y + G++E A  +F  +  K +   WN+M
Sbjct: 208 YVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVK-NLVTWNSM 266

Query: 147 VAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSMLSGYTKNGEMHLASKFFEAMEE--- 199
           +AGY +     +  K+   M       N +S +S+L G +    + L  +  + + +   
Sbjct: 267 IAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPL 326

Query: 200 -RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
            +D  +   ++  Y +  DLDSAWK F ++P ++V++W  M+SGYA++G   +A  LFD+
Sbjct: 327 SKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDK 386

Query: 259 MPIRNV------VAWNAMIAAYVQRGQIEEAARLFIEMP-----ERNPVSWTTMIDGYVR 307
           M  RN       + + A+I A    G ++   + F  M      E  PV +T +ID   R
Sbjct: 387 M--RNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGR 444

Query: 308 IAKLDEARRLLDQMPYKNIAAQTAMISGYVQ-NKRMDEA 345
             +LDEA  L+ +MP+   AA    + G  + +K +D A
Sbjct: 445 AGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDLA 483


>gi|326507410|dbj|BAK03098.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 698

 Score =  369 bits (946), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 219/657 (33%), Positives = 335/657 (50%), Gaps = 65/657 (9%)

Query: 143 WNAMVAGYA-KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
           WN ++  Y+        A++L D +P  +  SWNS+L+ +   G    A +   AM ER 
Sbjct: 37  WNQLLTAYSVSSPGLAAARRLFDEIPRLDAASWNSLLAAHVSIGAHPAACRLLRAMHERG 96

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKIPE--------QNVVSWVTMLSGYARNGRMLEAR 253
           + +    L   +             ++           NV S   +L  YA+ GR  +A 
Sbjct: 97  LAANTFALGSALRSAAAMGCSALGTQLHSLAVKAGLADNVFSATALLHMYAKCGRTRDAC 156

Query: 254 RLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDE 313
           RLFD MP RN V+WNA++A YV+ G++  A +LF+EM     +         + +   D 
Sbjct: 157 RLFDGMPERNTVSWNALVAGYVESGKVAPAVQLFVEMEREGFLPDEATFAALLTVVN-DS 215

Query: 314 ARRLLDQMPYKNIAAQTAM--------ISGYVQNKRMDEANQIFDKIGTH-DVVCWNVMI 364
              L+ Q+  K +   +A+        I+ Y Q   +  + +IFD+IG   D++ WN M+
Sbjct: 216 TCFLMHQLHGKIVKYGSALGLIVLNAAITAYSQCGALANSRRIFDEIGDRSDLISWNAML 275

Query: 365 KGYAQCGRMDEAINLFRQM-----VNKDIVTWNTMIAGYAQIRQ---------------- 403
             YA  G   EA+  F  M     V  D+ ++ ++I+  A+ R                 
Sbjct: 276 GAYATHGMEHEAMRFFASMMRASGVQPDMYSFTSIISACAEHRDHGGTVIHGLVSKNGFE 335

Query: 404 ---------------------MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI 442
                                M+DA K F+ +   ++TVSWN++++G+ Q+    DAL+ 
Sbjct: 336 GVTHVCNALIAMYTRFSENCMMEDAYKCFDSL-LLKDTVSWNSMLTGYSQHGLSADALRF 394

Query: 443 FVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
           F  M  E    D    + AL +C+ LA L+LGRQIH L I+SG+ ++ FV +SLI MY+K
Sbjct: 395 FRCMQSENITTDEYAFSAALRSCSDLALLRLGRQIHGLVIRSGFASNNFVSSSLIFMYSK 454

Query: 503 CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
            G + +A   F++AD    + WNS++ GYA +G A     LF +M+   V  D +TF+G+
Sbjct: 455 SGILDDAMKSFEEADKSSSVPWNSMMFGYAQHGKAQAVRSLFNQMLELKVPLDHITFVGL 514

Query: 563 LSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKP 622
           ++ACSH GLVD G ++   M   Y I   +EHYAC IDL  RAG+LD+A E++  M  +P
Sbjct: 515 ITACSHAGLVDEGSEILNTMESRYGIPLRMEHYACGIDLYGRAGQLDKAKELIDSMPFEP 574

Query: 623 NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRV 682
           +A +W TLLGACR+H N++L       L E EP++ S Y LLSNM++  G W +   V+ 
Sbjct: 575 DAMVWMTLLGACRVHGNMELASDVASHLLEAEPRQHSTYVLLSNMYSGLGMWSDRAIVQK 634

Query: 683 SMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNTPLAVI 739
            M+  G  K PG SWIEVKN++H+F + D    R  EI   L  L   + N P+ ++
Sbjct: 635 EMKNKGLSKVPGWSWIEVKNEVHSFNAEDGSHPRMDEIYEMLSLL---LHNFPMQLL 688



 Score =  156 bits (395), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 133/562 (23%), Positives = 254/562 (45%), Gaps = 81/562 (14%)

Query: 49  YNSMISAYA-KNGRVNDARKLFEQMPQRNLVSWNSMIAGYL----HNDKVKEARELFDKM 103
           +N +++AY+  +  +  AR+LF+++P+ +  SWNS++A ++    H    +  R + ++ 
Sbjct: 37  WNQLLTAYSVSSPGLAAARRLFDEIPRLDAASWNSLLAAHVSIGAHPAACRLLRAMHERG 96

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAK 160
              + F+    +      G      +L  L       ++     A++  YAK G   +A 
Sbjct: 97  LAANTFALGSALRSAAAMGCSALGTQLHSLAVKAGLADNVFSATALLHMYAKCGRTRDAC 156

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
           +L D MP +N VSWN++++GY ++G++  A + F  ME    +         + +  ++ 
Sbjct: 157 RLFDGMPERNTVSWNALVAGYVESGKVAPAVQLFVEMEREGFLPDEATFAALLTV--VND 214

Query: 221 AWKFFQKIPEQNVVSWVTML---------SGYARNGRMLEARRLFDQMPIR-NVVAWNAM 270
           +  F        +V + + L         + Y++ G +  +RR+FD++  R ++++WNAM
Sbjct: 215 STCFLMHQLHGKIVKYGSALGLIVLNAAITAYSQCGALANSRRIFDEIGDRSDLISWNAM 274

Query: 271 IAAYVQRGQIEEAARLFIEMPERNPV-----SWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           + AY   G   EA R F  M   + V     S+T++I         D    ++  +  KN
Sbjct: 275 LGAYATHGMEHEAMRFFASMMRASGVQPDMYSFTSIISACAE--HRDHGGTVIHGLVSKN 332

Query: 326 --------IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAI 377
                     A  AM + + +N  M++A + FD +   D V WN M+ GY+Q G   +A+
Sbjct: 333 GFEGVTHVCNALIAMYTRFSENCMMEDAYKCFDSLLLKDTVSWNSMLTGYSQHGLSADAL 392

Query: 378 NLFRQMVNKDIVT---------------------------------------WNTMIAGY 398
             FR M +++I T                                        +++I  Y
Sbjct: 393 RFFRCMQSENITTDEYAFSAALRSCSDLALLRLGRQIHGLVIRSGFASNNFVSSSLIFMY 452

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           ++   +DDA+K FEE  K  ++V WN+++ G+ Q+        +F  M +     DH T 
Sbjct: 453 SKSGILDDAMKSFEEADK-SSSVPWNSMMFGYAQHGKAQAVRSLFNQMLELKVPLDHITF 511

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSL--ITMYAKCGRIQNAELLFKDA 516
              ++AC+H   +  G +I +  ++S Y   L + +    I +Y + G++  A+ L  D+
Sbjct: 512 VGLITACSHAGLVDEGSEILN-TMESRYGIPLRMEHYACGIDLYGRAGQLDKAKELI-DS 569

Query: 517 DPV--DVISWNSLIAGYAINGN 536
            P   D + W +L+    ++GN
Sbjct: 570 MPFEPDAMVWMTLLGACRVHGN 591



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 194/412 (47%), Gaps = 48/412 (11%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           N  +  +++  YAK GR  DA +LF+ MP+RN VSWN+++AGY+ + KV  A +LF +M 
Sbjct: 135 NVFSATALLHMYAKCGRTRDACRLFDGMPERNTVSWNALVAGYVESGKVAPAVQLFVEME 194

Query: 104 ---FRPDLFSWALMI------TCYTR---KGELEKARELFDLLPNKEDTACWNAMVAGYA 151
              F PD  ++A ++      TC+      G++ K      L+         NA +  Y+
Sbjct: 195 REGFLPDEATFAALLTVVNDSTCFLMHQLHGKIVKYGSALGLI-------VLNAAITAYS 247

Query: 152 KIGNYNEAKKLLDAMPSK-NIVSWNSMLSGYTKNGEMHLASKFFEAME-----ERDVVSW 205
           + G    ++++ D +  + +++SWN+ML  Y  +G  H A +FF +M      + D+ S+
Sbjct: 248 QCGALANSRRIFDEIGDRSDLISWNAMLGAYATHGMEHEAMRFFASMMRASGVQPDMYSF 307

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT--------MLSGYARNGRMLEARRLFD 257
             ++    E    D        +  +N    VT        M + ++ N  M +A + FD
Sbjct: 308 TSIISACAE--HRDHGGTVIHGLVSKNGFEGVTHVCNALIAMYTRFSENCMMEDAYKCFD 365

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVR----IAKLDE 313
            + +++ V+WN+M+  Y Q G   +A R F  M   N  +        +R    +A L  
Sbjct: 366 SLLLKDTVSWNSMLTGYSQHGLSADALRFFRCMQSENITTDEYAFSAALRSCSDLALLRL 425

Query: 314 ARRLLDQMPYKNIAA----QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ 369
            R++   +     A+     +++I  Y ++  +D+A + F++      V WN M+ GYAQ
Sbjct: 426 GRQIHGLVIRSGFASNNFVSSSLIFMYSKSGILDDAMKSFEEADKSSSVPWNSMMFGYAQ 485

Query: 370 CGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
            G+     +LF QM    V  D +T+  +I   +    +D+  +I   M  R
Sbjct: 486 HGKAQAVRSLFNQMLELKVPLDHITFVGLITACSHAGLVDEGSEILNTMESR 537



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/449 (23%), Positives = 196/449 (43%), Gaps = 69/449 (15%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF+    +    K GR  +A ++F  M ++NTV++N++++ Y ++G+V  A +LF +M +
Sbjct: 136 VFSATALLHMYAKCGRTRDACRLFDGMPERNTVSWNALVAGYVESGKVAPAVQLFVEMER 195

Query: 75  RNLVSWNSMIAGYL---HNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKA 127
              +   +  A  L   ++       +L  K+ +      L      IT Y++ G L  +
Sbjct: 196 EGFLPDEATFAALLTVVNDSTCFLMHQLHGKIVKYGSALGLIVLNAAITAYSQCGALANS 255

Query: 128 RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM-----PSKNIVSWNSMLSG-- 180
           R +FD + ++ D   WNAM+  YA  G  +EA +   +M        ++ S+ S++S   
Sbjct: 256 RRIFDEIGDRSDLISWNAMLGAYATHGMEHEAMRFFASMMRASGVQPDMYSFTSIISACA 315

Query: 181 -----------------------------------YTKNGEMHLASKFFEAMEERDVVSW 205
                                              +++N  M  A K F+++  +D VSW
Sbjct: 316 EHRDHGGTVIHGLVSKNGFEGVTHVCNALIAMYTRFSENCMMEDAYKCFDSLLLKDTVSW 375

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ---MPIR 262
           N ML GY +      A +FF+ +  +N+ +     S   R+   L   RL  Q   + IR
Sbjct: 376 NSMLTGYSQHGLSADALRFFRCMQSENITTDEYAFSAALRSCSDLALLRLGRQIHGLVIR 435

Query: 263 NVVAWN-----AMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL 317
           +  A N     ++I  Y + G +++A + F E  + + V W +M+ GY +  K    R L
Sbjct: 436 SGFASNNFVSSSLIFMYSKSGILDDAMKSFEEADKSSSVPWNSMMFGYAQHGKAQAVRSL 495

Query: 318 LDQM-----PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC-----WNVMIKGY 367
            +QM     P  +I     +I+       +DE ++I + + +   +      +   I  Y
Sbjct: 496 FNQMLELKVPLDHITF-VGLITACSHAGLVDEGSEILNTMESRYGIPLRMEHYACGIDLY 554

Query: 368 AQCGRMDEAINLFRQM-VNKDIVTWNTMI 395
            + G++D+A  L   M    D + W T++
Sbjct: 555 GRAGQLDKAKELIDSMPFEPDAMVWMTLL 583


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  368 bits (945), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 207/647 (31%), Positives = 350/647 (54%), Gaps = 60/647 (9%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----E 199
           N ++  YA  G+ NEA++L D   +K++VSWN M+SGY   G    A   F  M+    E
Sbjct: 67  NTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLE 126

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT----MLSGYARNGRMLEARRL 255
            D  ++  +L        L+   +   ++ E  + +  T    ++S YA+ G + +ARR+
Sbjct: 127 PDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRV 186

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PERNPVSWTTMIDGYVRIA 309
           FD M  R+ V+W  +  AY + G  EE+ + +  M      P R  +++  ++     +A
Sbjct: 187 FDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSR--ITYMNVLSACGSLA 244

Query: 310 KLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIK 365
            L++ +++    ++   + ++   TA+   Y++     +A ++F+ +   DV+ WN MI+
Sbjct: 245 ALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIR 304

Query: 366 GYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAG------------------------ 397
           G+   G+++EA   F +M    V  D  T+ T+++                         
Sbjct: 305 GFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVS 364

Query: 398 -----------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446
                      Y++   M DA ++F+ M KR + VSW  L+  +   +  +++   F  M
Sbjct: 365 DVRFGNALINMYSKAGSMKDARQVFDRMPKR-DVVSWTTLLGRYADCDQVVESFTTFKQM 423

Query: 447 TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI 506
            Q+G KA+  T  C L AC++  AL+ G++IH   +K+G + DL V N+L++MY KCG +
Sbjct: 424 LQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSV 483

Query: 507 QNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
           ++A  +F+     DV++WN+LI G   NG   EA++ +E M  EG+ P+  TF+ VLSAC
Sbjct: 484 EDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSAC 543

Query: 567 SHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGI 626
               LV+ G + F  M++ Y I P  +HYACM+D+L+RAG L EA +++  + +KP+A +
Sbjct: 544 RVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAM 603

Query: 627 WGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEG 686
           WG LL ACR+H N+++G  A E   +LEPQ    Y  LS ++A AG W +V K+R  M+ 
Sbjct: 604 WGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKE 663

Query: 687 SGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
            G +K+PG SWIE+  ++H+F++ D    RT EI   L+TL  Q+++
Sbjct: 664 RGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYAELETLKKQMKS 710



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 148/559 (26%), Positives = 262/559 (46%), Gaps = 67/559 (11%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           + N    N+++  YA  G VN+AR+LF++   +++VSWN MI+GY H    +EA  LF  
Sbjct: 60  KPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTL 119

Query: 103 M----FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGN 155
           M      PD F++  +++  +    L   RE+   +       DT   NA+++ YAK G+
Sbjct: 120 MQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGS 179

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDG 211
             +A+++ DAM S++ VSW ++   Y ++G    + K + AM +  V    +++  +L  
Sbjct: 180 VRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSA 239

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSG----YARNGRMLEARRLFDQMPIRNVVAW 267
              L  L+   +    I E    S V + +     Y + G   +AR +F+ +  R+V+AW
Sbjct: 240 CGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAW 299

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
           N MI  +V  GQ+EEA   F  M E     +  ++TT++    R   L   + +  +   
Sbjct: 300 NTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAK 359

Query: 324 KNIAAQT----AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
             + +      A+I+ Y +   M +A Q+FD++   DVV W  ++  YA C ++ E+   
Sbjct: 360 DGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTT 419

Query: 380 FRQMVNK---------------------------------------DIVTWNTMIAGYAQ 400
           F+QM+ +                                       D+   N +++ Y +
Sbjct: 420 FKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFK 479

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
              ++DA+++FE M   R+ V+WN LI G  QN   L+AL+ + +M  EG + + +T   
Sbjct: 480 CGSVEDAIRVFEGMSM-RDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVN 538

Query: 461 ALSACAHLAALQLG-RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE--LLFKDAD 517
            LSAC     ++ G RQ   ++   G V        ++ + A+ G ++ AE  +L     
Sbjct: 539 VLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLK 598

Query: 518 PVDVISWNSLIAGYAINGN 536
           P   + W +L+A   I+ N
Sbjct: 599 PSAAM-WGALLAACRIHCN 616



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 146/290 (50%), Gaps = 34/290 (11%)

Query: 378 NLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHL 437
           ++ R  V  ++   NT++  YA    +++A ++F++    ++ VSWN +ISG+       
Sbjct: 53  HILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSN-KSVVSWNVMISGYAHRGLAQ 111

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
           +A  +F LM QE  + D  T    LSAC+  A L  GR+IH   +++G  ND  VGN+LI
Sbjct: 112 EAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALI 171

Query: 498 TMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
           +MYAKCG +++A  +F      D +SW +L   YA +G   E++K +  M+ E V P  +
Sbjct: 172 SMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRI 231

Query: 558 TFIGVLSACSHVGLVDGG---------------LKLFECMTEVY----AIEPLVEHYAC- 597
           T++ VLSAC  +  ++ G               +++   +T++Y    A +   E + C 
Sbjct: 232 TYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECL 291

Query: 598 ----------MIDLLSRAGRLDEA---FEMVKGMKIKPNAGIWGTLLGAC 634
                     MI     +G+L+EA   F  +    + P+   + T+L AC
Sbjct: 292 SYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSAC 341



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 4/193 (2%)

Query: 442 IFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYA 501
           +   + ++G + D       L +C     L +G+Q+H   ++ G   ++++ N+L+ +YA
Sbjct: 15  VLQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYA 74

Query: 502 KCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIG 561
            CG +  A  LF       V+SWN +I+GYA  G A EA  LF  M  E + PD  TF+ 
Sbjct: 75  HCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVS 134

Query: 562 VLSACSHVGLVDGGLKL-FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKI 620
           +LSACS   +++ G ++    M    A +  V +   +I + ++ G + +A  +   M  
Sbjct: 135 ILSACSSPAVLNWGREIHVRVMEAGLANDTTVGN--ALISMYAKCGSVRDARRVFDAMAS 192

Query: 621 KPNAGIWGTLLGA 633
           +     W TL GA
Sbjct: 193 RDEVS-WTTLTGA 204



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 16/190 (8%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR----NLVSWNS 82
           K G VE+AI++F  MS ++ VT+N++I    +NGR  +A + +E M       N  ++ +
Sbjct: 479 KCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVN 538

Query: 83  MIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARELFDLLPNK 137
           +++     + V+E R  F  M +     P    +A M+    R G L +A ++   +P K
Sbjct: 539 VLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLK 598

Query: 138 EDTACWNAMVAGY-----AKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
              A W A++A        +IG    A+  L   P +N   + S+ + Y   G     +K
Sbjct: 599 PSAAMWGALLAACRIHCNVEIGE-RAAEHCLKLEP-QNAGLYVSLSAIYAAAGMWRDVAK 656

Query: 193 FFEAMEERDV 202
             + M+ER V
Sbjct: 657 LRKFMKERGV 666


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  368 bits (945), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 217/654 (33%), Positives = 343/654 (52%), Gaps = 46/654 (7%)

Query: 114 MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS--KNI 171
           +I  YT  G+L  A  LF   P         ++VA YA  G    A    DA+P   ++ 
Sbjct: 65  LIHLYTLSGDLPAAATLFRADPCP---VAATSLVAAYAAAGRLPAAVSFFDAVPQARRDT 121

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ 231
           V  N+++S Y +      A   F ++    + S +L  D Y     L SA      I  +
Sbjct: 122 VLHNAVISAYARASHAAPAVAVFRSL----LASGSLRPDDY-SFTALLSAAGHLPNISVR 176

Query: 232 N---------------VVSWVTMLSGYARNGRMLEA----RRLFDQMPIRNVVAWNAMIA 272
           +               V+S    L         LEA    R++ D+MP ++ + W  M+ 
Sbjct: 177 HCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVV 236

Query: 273 AYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA----RRL------LDQMP 322
            YV+RG +  A  +F E+  +  V W  MI GYV    + EA    RR+      LD+  
Sbjct: 237 GYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFT 296

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIF----DKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
           + ++ +  A    +   K +    QI     + +    +   N ++  Y++CG +  A  
Sbjct: 297 FTSVLSACANAGFFAHGKSVH--GQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARR 354

Query: 379 LFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
           +F  M +KD+V+WNT+++GY +   +D AV++FEEM   +N +SW  ++SG++   F  D
Sbjct: 355 IFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEM-PYKNELSWMVMVSGYVHGGFSED 413

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
           ALK+F  M  E  K    T A A+SAC  L +L+ G+Q+H   ++ G+      GN+LIT
Sbjct: 414 ALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALIT 473

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           MYA+CG ++ A L+F     +D +SWN++I+    +G+  EA++LF+ MV EG+ PD ++
Sbjct: 474 MYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRIS 533

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
           F+ VL+AC+H GLVD G + FE M   + I P  +HY  +IDLL RAGR+ EA +++K M
Sbjct: 534 FLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTM 593

Query: 619 KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVE 678
             +P   IW  +L  CR   +++LG  A ++L ++ PQ    Y LLSN ++ AGRW +  
Sbjct: 594 PFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAA 653

Query: 679 KVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +VR  M   G +K+PGCSWIE  N++H F+ GD K     ++   L+ + A++R
Sbjct: 654 RVRKLMRDRGVKKEPGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFLEMVGARMR 707



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 152/604 (25%), Positives = 251/604 (41%), Gaps = 134/604 (22%)

Query: 28  SGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ--RNLVSWNSMIA 85
           SG +  A  +F   +    V   S+++AYA  GR+  A   F+ +PQ  R+ V  N++I+
Sbjct: 72  SGDLPAAATLFR--ADPCPVAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVIS 129

Query: 86  GYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
            Y        A  +F  +      RPD +S+  +++                 LPN    
Sbjct: 130 AYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGH-------------LPNISVR 176

Query: 141 ACW------------------NAMVAGYAK---IGNYNEAKKLLDAMPSKNIVSWNSMLS 179
            C                   NA+VA Y K   +    +A+K+LD MP K+ ++W +M+ 
Sbjct: 177 HCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVV 236

Query: 180 GYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VS 235
           GY + G++  A   FE ++ +  V WN M+ GYV    +  A++ F+++  + V     +
Sbjct: 237 GYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFT 296

Query: 236 WVTMLSGYARNGRMLEARRLFDQM--------PIRNVVAWNAMIAAYVQRGQIEEAARLF 287
           + ++LS  A  G     + +  Q+        P   +   NA++  Y + G I  A R+F
Sbjct: 297 FTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIF 356

Query: 288 IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347
             M  ++ VSW T++ GYV  + LD+A  + ++MPYKN  +   M+SGYV     ++A +
Sbjct: 357 DNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALK 416

Query: 348 IFDKIGTHDV------------VC---------------------------WNVMIKGYA 368
           +F+++   DV             C                            N +I  YA
Sbjct: 417 LFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYA 476

Query: 369 QCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
           +CG + EA  +F  M N D V+WN MI+   Q              G  R          
Sbjct: 477 RCGAVKEANLMFLVMPNIDSVSWNAMISALGQ-------------HGHGR---------- 513

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ-IHHLAIKSGYV 487
                    +AL++F  M  EG   D  +    L+AC H   +  G Q    +    G +
Sbjct: 514 ---------EALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGII 564

Query: 488 NDLFVGNSLITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAINGN----ATEAI 541
                   LI +  + GRI  A  L K    +P   I W ++++G   +G+    A  A 
Sbjct: 565 PGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSI-WEAILSGCRTSGDMELGAHAAD 623

Query: 542 KLFE 545
           +LF+
Sbjct: 624 QLFK 627



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 149/299 (49%), Gaps = 25/299 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +T   K G +  A +IF  M  K+ V++N+++S Y ++  ++ A ++FE+MP +N +
Sbjct: 337 NALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNEL 396

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLL 134
           SW  M++GY+H    ++A +LF++M     +P  +++A  I+     G L+  ++L   L
Sbjct: 397 SWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHL 456

Query: 135 PN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
                +   +  NA++  YA+ G   EA  +   MP+ + VSWN+M+S   ++G    A 
Sbjct: 457 VQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREAL 516

Query: 192 KFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQK-------IPEQNVVSWVTML 240
           + F+ M       D +S+  +L        +D  +++F+        IP ++   +  ++
Sbjct: 517 ELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGED--HYTRLI 574

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVA-WNAMIAAYVQRGQIEEAA----RLFIEMPERN 294
               R GR+ EAR L   MP     + W A+++     G +E  A    +LF   P+ +
Sbjct: 575 DLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHD 633



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 116/474 (24%), Positives = 199/474 (41%), Gaps = 79/474 (16%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL----VSWNS 82
           + G V  A  +F ++  K  V +N+MIS Y  +G V +A +LF +M    +     ++ S
Sbjct: 240 RRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTS 299

Query: 83  MI-----AGYL-HNDKVKEARELFDKMFRPD--LFSWALMITCYTRKGELEKARELFDLL 134
           ++     AG+  H   V          F P+  L     ++T Y++ G +  AR +FD +
Sbjct: 300 VLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNM 359

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
            +K D   WN +++GY +    ++A ++ + MP KN +SW  M+SGY   G    A K F
Sbjct: 360 KSK-DVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLF 418

Query: 195 EAMEERDVVSWNLMLDGYV----ELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARN 246
             M   DV   +    G +    EL  L    +    +     E +  +   +++ YAR 
Sbjct: 419 NRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARC 478

Query: 247 GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PERNPV---- 296
           G + EA  +F  MP  + V+WNAMI+A  Q G   EA  LF  M      P+R       
Sbjct: 479 GAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVL 538

Query: 297 ------------------------------SWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
                                          +T +ID   R  ++ EAR L+  MP++  
Sbjct: 539 TACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPT 598

Query: 327 AAQ-TAMISGYVQNKRMD----EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
            +   A++SG   +  M+     A+Q+F     HD   + ++   Y+  GR  +A  + +
Sbjct: 599 PSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGT-YILLSNTYSAAGRWVDAARVRK 657

Query: 382 QMVNKDI-----VTW-------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
            M ++ +      +W       +  + G  +  +     K  E +G R   + +
Sbjct: 658 LMRDRGVKKEPGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFLEMVGARMRKLGY 711


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  368 bits (945), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 248/780 (31%), Positives = 390/780 (50%), Gaps = 91/780 (11%)

Query: 37  IFSQMSQKNTVT-YNSMISAYAKN-GRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVK 94
           + S+    N VT  N +IS Y    G V+ AR+ F+ +  RNLVS NSMI+ Y       
Sbjct: 201 LMSKTQYVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAV 260

Query: 95  EARELFDKM--------FRPDLFSWALMI--TCYTRKGELEKARELFDLLPNK---EDTA 141
            A ++F  M         +P+ +++  +I  TC      L    +L   +       D  
Sbjct: 261 SAFDIFSTMQKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLY 320

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
             +A+V+G+AK G+   AK +   M  +N+VS N ++ G  +      A + F  ME +D
Sbjct: 321 VGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELF--MEMKD 378

Query: 202 VV-----SWNLMLDGYVELDDLDS---------AWKFFQKIPEQNVVSWVTMLSGYARNG 247
            V     S+ ++L  + E   L++         A+     +    +     +++ YA+ G
Sbjct: 379 SVELNPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCG 438

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM--PERNPVSWTTMIDGY 305
            + +A  +F  M  ++ V WN+MI    Q  Q  EA + F EM   E  P ++T MI   
Sbjct: 439 AINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFT-MISAL 497

Query: 306 VRIAKLD----------EARRL-LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
              A L           E  +L LD     +++   A+++ Y +   + E  + F  +  
Sbjct: 498 SSCASLGWISVGEQLHCEGLKLGLDL----DVSVSNALLALYGECGYVKECQKAFSLMLD 553

Query: 355 HDVVCWNVMIKGYAQC-GRMDEAINLFRQM------------------------------ 383
           +D V WN +I   A     M EA+  F  M                              
Sbjct: 554 YDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQ 613

Query: 384 ---------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
                    V  D    N ++A Y +   M     IF  M  R++ VSWN++ISG++ NE
Sbjct: 614 IHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNE 673

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN 494
               A+ +   M Q+G++ D  T A  LSACA +A L+ G ++H  ++++   +D+ +G+
Sbjct: 674 LLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGS 733

Query: 495 SLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP 554
           +L+ MYAKCGRI  A   F+     ++ SWNS+I+GYA +G+ T+++ LF +M ++G  P
Sbjct: 734 ALVDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLP 793

Query: 555 DPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEM 614
           D VTF+GVLSACSH GLV+ G   F+ M+E+Y + P +EH++CM+DLL R G L++  + 
Sbjct: 794 DHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDF 853

Query: 615 VKGMKIKPNAGIWGTLLGA-CRMH-QNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672
           +  M +KPN  IW T+LGA CR + +N  LGR A E L E+EP     Y LLSNM+A  G
Sbjct: 854 LNQMPVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEPTNAVNYILLSNMYASGG 913

Query: 673 RWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +WD+V K RV+M  +  +K+ GCSW+ +K+ +H F++GD        I   LK L  ++R
Sbjct: 914 KWDDVAKTRVAMRKAFVKKEAGCSWVTMKDGVHVFVAGDKSHPEKDLIYEKLKELNGKMR 973



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 166/574 (28%), Positives = 276/574 (48%), Gaps = 86/574 (14%)

Query: 32  EEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHND 91
           E  +++F      +    N++I+ YA+ G +   RK+F++MP RNLVSW+ +I+GY  N 
Sbjct: 94  ELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNR 153

Query: 92  KVKEARELFDKM----FRPDLFSWALMITCYTRKGE--LEKARELFDLLPNKE---DTAC 142
              EA ELF KM    F P+ +++  +I      GE  L+   ++  L+   +   D   
Sbjct: 154 MPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTA 213

Query: 143 WNAMVAGYAK-IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
            N +++ Y   +G  + A++  D++  +N+VS NSM+S Y + G+   A   F  M++  
Sbjct: 214 SNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEV 273

Query: 202 V----------------VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR 245
           +                 + +L   G V L+ L +  +    + +  V S   ++SG+A+
Sbjct: 274 MGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGS--ALVSGFAK 331

Query: 246 NGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP---ERNPVSWTTMI 302
            G +  A+ +F +M  RNVV+ N +I   V++ + EEA  LF+EM    E NP S+  ++
Sbjct: 332 AGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNSYMIIL 391

Query: 303 DGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNV 362
             +     L+  +R       K       +I   + N ++         IG       N 
Sbjct: 392 TAFPEFHVLENGKR-------KGSEVHAFLIRSGLLNAQI--------AIG-------NG 429

Query: 363 MIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
           +I  YA+CG +++A  +FR M NKD VTWN+MI G  Q +Q  +AVK F+EM  RR  + 
Sbjct: 430 LINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEM--RRTEL- 486

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482
                                           + T+  ALS+CA L  + +G Q+H   +
Sbjct: 487 -----------------------------YPSNFTMISALSSCASLGWISVGEQLHCEGL 517

Query: 483 KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN-GNATEAI 541
           K G   D+ V N+L+ +Y +CG ++  +  F      D +SWNSLI   A +  +  EA+
Sbjct: 518 KLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAV 577

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
           + F  M+  G  P+ VTFI +L+A S + L + G
Sbjct: 578 ESFLVMMRAGWDPNRVTFITILAAVSSLSLHELG 611



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 134/571 (23%), Positives = 233/571 (40%), Gaps = 109/571 (19%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           + G    A  I S +        N +I+ YAK G +NDA  +F  M  ++ V+WNSMI G
Sbjct: 405 RKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITG 464

Query: 87  YLHNDKVKEARELFDKMFRPDLF-SWALMITCYTRKGEL-----------EKARELFDLL 134
              N +  EA + F +M R +L+ S   MI+  +    L           E  +   DL 
Sbjct: 465 LDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDL- 523

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
               D +  NA++A Y + G   E +K    M   + VSWNS++     +          
Sbjct: 524 ----DVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADS-----EPSML 574

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
           EA+E   V+              + + W       + N V+++T+L+  +        ++
Sbjct: 575 EAVESFLVM--------------MRAGW-------DPNRVTFITILAAVSSLSLHELGKQ 613

Query: 255 LFDQMPIRNVVA----WNAMIAAYVQRGQIEEAARLFIEMPER-NPVSWTTMIDGYVRIA 309
           +   +  RNV A     NA++A Y + G +     +F  M +R + VSW +MI GY+   
Sbjct: 614 IHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNE 673

Query: 310 KLDEARRL----------LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
            L +A  +          LD   +  + +  A ++     + M+            D+V 
Sbjct: 674 LLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVA--TLERGMEVHGCSVRACLESDIVI 731

Query: 360 WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRN 419
            + ++  YA+CGR+D A   F  M  +++ +WN+MI+GYA+              G +  
Sbjct: 732 GSALVDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYAR-----------HGHGTK-- 778

Query: 420 TVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG----- 474
                              +L +F  M  +G   DH T    LSAC+H   +  G     
Sbjct: 779 -------------------SLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFD 819

Query: 475 --RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAG 530
              +I+ LA +  +       + ++ +  + G +   E  F +  PV  +V+ W +++  
Sbjct: 820 SMSEIYGLAPRMEHF------SCMVDLLGRVGELNKME-DFLNQMPVKPNVLIWRTVLGA 872

Query: 531 YA-INGNATEAIKLFEEMVMEGVAPDPVTFI 560
               NG  T   +   EM++E    + V +I
Sbjct: 873 CCRANGRNTALGRRAAEMLLEMEPTNAVNYI 903



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 147/300 (49%), Gaps = 22/300 (7%)

Query: 369 QCGRMDEA---INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
            CG  D     + LF+     D+   NT+I  YA++  +    K+F+EM   RN VSW+ 
Sbjct: 86  SCGSKDAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEM-PLRNLVSWSC 144

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA--ALQLGRQIHHLAIK 483
           LISG+ +N    +A ++F  M  +G   +H      + AC       L+ G QIH L  K
Sbjct: 145 LISGYTRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSK 204

Query: 484 SGYVNDLFVGNSLITMYAKC-GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIK 542
           + YVND+   N LI+MY    G +  A   F    P +++S NS+I+ Y   G+A  A  
Sbjct: 205 TQYVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFD 264

Query: 543 LF----EEMVMEGVAPDPVTFIGVLSA-CSHVGLVDGGLKLFE-CMTEVYAIEPLVEHY- 595
           +F    +E++ +G+ P+  TF  ++SA CS   L + GL L E  +T V     L + Y 
Sbjct: 265 IFSTMQKEVMGDGLKPNEYTFGSLISATCS---LANSGLVLLEQLLTRVEKSGFLHDLYV 321

Query: 596 -ACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE 654
            + ++   ++AG +  A  + + M  +    + G ++G  R     K G  AVE   E++
Sbjct: 322 GSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQ----KRGEEAVELFMEMK 377



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 102/435 (23%), Positives = 168/435 (38%), Gaps = 131/435 (30%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  I    K G + +A  +F  M  K++VT+NSMI+   +N +  +A K F++M +  L 
Sbjct: 428 NGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELY 487

Query: 78  ---------------VSW-----------------------NSMIAGYLHNDKVKEAREL 99
                          + W                       N+++A Y     VKE ++ 
Sbjct: 488 PSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKA 547

Query: 100 FDKMFRPDLFSWALMITCY--TRKGELEKARELFDLL-----PNK--------------- 137
           F  M   D  SW  +I     +    LE       ++     PN+               
Sbjct: 548 FSLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSL 607

Query: 138 -----------------EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK-NIVSWNSMLS 179
                             DTA  NA++A Y K G+    + +   M  + + VSWNSM+S
Sbjct: 608 HELGKQIHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMIS 667

Query: 180 GYTKNG-----------------------------------------EMHLASKFFEAME 198
           GY  N                                          E+H  S    A  
Sbjct: 668 GYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCS--VRACL 725

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
           E D+V  + ++D Y +   +D A +FF+ +P +N+ SW +M+SGYAR+G   ++  LF Q
Sbjct: 726 ESDIVIGSALVDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQ 785

Query: 259 M----PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVRIA 309
           M    P+ + V +  +++A    G + E    F  M E   ++     ++ M+D   R+ 
Sbjct: 786 MKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVG 845

Query: 310 KLDEARRLLDQMPYK 324
           +L++    L+QMP K
Sbjct: 846 ELNKMEDFLNQMPVK 860



 Score = 70.5 bits (171), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 90/209 (43%), Gaps = 19/209 (9%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM----PQRNL 77
           +    K GR++ A + F  M  +N  ++NSMIS YA++G    +  LF QM    P  + 
Sbjct: 736 VDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDH 795

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFD 132
           V++  +++   H   V E    FD M       P +  ++ M+    R GEL K  +  +
Sbjct: 796 VTFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLN 855

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYN-----EAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
            +P K +   W  ++    +    N      A ++L  M   N V++  + + Y   G+ 
Sbjct: 856 QMPVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEPTNAVNYILLSNMYASGGKW 915

Query: 188 HLASKFFEAMEERDV-----VSWNLMLDG 211
              +K   AM +  V      SW  M DG
Sbjct: 916 DDVAKTRVAMRKAFVKKEAGCSWVTMKDG 944


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  368 bits (945), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 227/684 (33%), Positives = 355/684 (51%), Gaps = 87/684 (12%)

Query: 119 TRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSML 178
           ++ G++  AR+LFD +P K++ + WN M++ Y  +G   EA++L D    K+ ++W+S++
Sbjct: 76  SKSGQVNDARKLFDKMPQKDEYS-WNTMISSYVNVGRLVEARELFDGCSCKSSITWSSII 134

Query: 179 SGYTKNG----------EMHL----ASKFFEAMEERDVVSWNL-----MLDGYVELDDLD 219
           SGY K G           M L    AS+F      R   S  L     M+ G+V  +   
Sbjct: 135 SGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGF- 193

Query: 220 SAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI--RNVVAWNAMIAAYVQR 277
                     E NV     ++  YA+   + EA  LF  +    +N V W AM+  Y Q 
Sbjct: 194 ----------EGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQN 243

Query: 278 GQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY--------KN 325
           G   +A   F  M     E N  ++ T++     +     AR   +Q+           N
Sbjct: 244 GDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVL----ARCFGEQVHGFIVKSGFGSN 299

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
           +  Q+A++  Y +   +  A  + + +   DVV WN ++ G+ + G  +EA+ LF+ M  
Sbjct: 300 VYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHG 359

Query: 386 KDI-------------------------------------VTWNTMIAGYAQIRQMDDAV 408
           +++                                     +  N ++  YA+   MD A 
Sbjct: 360 RNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAY 419

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
            +FE+M   ++ +SW +L++G+ QN  H ++LKIF  M   G   D   +A  LSACA L
Sbjct: 420 TVFEKM-LEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAEL 478

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
             L+ G+Q+H   IKSG      V NSL+ MYAKCG + +A+ +F      DVI+W ++I
Sbjct: 479 TLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAII 538

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI 588
            GYA NG    ++K ++ MV  G  PD +TFIG+L ACSH GLVD G K F+ M +VY I
Sbjct: 539 VGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGI 598

Query: 589 EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVE 648
           +P  EHYACMIDL  R+G+LDEA +++  M +KP+A +W +LL ACR+H+N++L   A  
Sbjct: 599 KPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAAT 658

Query: 649 KLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFL 708
            L ELEP     Y +LSNM++ + +W++V K+R  M+  G  K+PGCSW+E+ ++++TF+
Sbjct: 659 NLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFI 718

Query: 709 SGDPKQCRTAEICNTLKTLAAQIR 732
           S D    R AEI   +  +  +I+
Sbjct: 719 SDDRGHPREAEIYTKIDEIILRIK 742



 Score =  168 bits (426), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 154/608 (25%), Positives = 272/608 (44%), Gaps = 87/608 (14%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           ++  N+ + QL KSG+V +A K+F +M QK+  ++N+MIS+Y   GR+ +AR+LF+    
Sbjct: 65  IYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSC 124

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKAREL 130
           ++ ++W+S+I+GY       EA +LF  M    ++   F+   ++   +  G ++    +
Sbjct: 125 KSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMI 184

Query: 131 FDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMP--SKNIVSWNSMLSGYTKNG 185
              +     + +      +V  YAK    +EA+ L   +    KN V W +M++GY +NG
Sbjct: 185 HGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNG 244

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP--------EQNVVSWV 237
           + + A +FF  M  + V          +       A  F +++           NV    
Sbjct: 245 DGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQS 304

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
            ++  YA+ G +  A+ + + M   +VV+WN+++  +V+ G  EEA RLF  M  RN   
Sbjct: 305 ALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRN--- 361

Query: 298 WTTMIDGYVRIAKLD----------EARRLLDQMPYKNIA-AQTAMISGYVQNKRMDEAN 346
               ID Y   + L+              L+ +  ++N      A++  Y +   MD A 
Sbjct: 362 --MKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAY 419

Query: 347 QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKD--IV----------- 389
            +F+K+   DV+ W  ++ GYAQ    +E++ +F  M    VN D  IV           
Sbjct: 420 TVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELT 479

Query: 390 ----------------------TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
                                  +N+++A YA+   +DDA  IF  M + ++ ++W A+I
Sbjct: 480 LLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSM-QVKDVITWTAII 538

Query: 428 SGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHH-----LAI 482
            G+ QN    ++LK +  M   G + D  T    L AC+H   +  GR+          I
Sbjct: 539 VGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGI 598

Query: 483 KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD-PVDVISWNSLIAGYAINGN----A 537
           K G  +       +I ++ + G++  A+ L    D   D   W SL++   ++ N     
Sbjct: 599 KPGPEHYA----CMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAE 654

Query: 538 TEAIKLFE 545
             A  LFE
Sbjct: 655 RAATNLFE 662



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 120/496 (24%), Positives = 209/496 (42%), Gaps = 115/496 (23%)

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
           N +L+   +   ++ A K F K+P+++  SW TM+S Y   GR++EAR LFD    ++ +
Sbjct: 69  NQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSI 128

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMP---------------------------------- 291
            W+++I+ Y + G   EA  LF  M                                   
Sbjct: 129 TWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFV 188

Query: 292 -----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY--KNIAAQTAMISGYVQNKRMDE 344
                E N    T ++D Y +   + EA  L   + +  KN    TAM++GY QN    +
Sbjct: 189 VKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYK 248

Query: 345 ANQIFDKIGTHDVVC---------------------------------------WNVMIK 365
           A + F  +    V C                                        + ++ 
Sbjct: 249 AVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVD 308

Query: 366 GYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
            YA+CG +  A N+   M + D+V+WN+++ G+ +    ++A+++F+ M  R        
Sbjct: 309 MYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRN------- 361

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485
                                     K D  T    L+ C  + ++   + +H L IK+G
Sbjct: 362 -------------------------MKIDDYTFPSVLNCCV-VGSIN-PKSVHGLIIKTG 394

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
           + N   V N+L+ MYAK G +  A  +F+     DVISW SL+ GYA N +  E++K+F 
Sbjct: 395 FENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFC 454

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRA 605
           +M + GV PD      +LSAC+ + L++ G ++     +   +      Y  ++ + ++ 
Sbjct: 455 DMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKS-GLRWSQSVYNSLVAMYAKC 513

Query: 606 GRLDEAFEMVKGMKIK 621
           G LD+A  +   M++K
Sbjct: 514 GCLDDADAIFVSMQVK 529



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 142/310 (45%), Gaps = 57/310 (18%)

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
           Y++I     +++   ++ ++++A ++FDK+   D   WN MI  Y   GR+ EA  LF  
Sbjct: 62  YESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDG 121

Query: 383 MVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI 442
              K  +TW+++I+GY +        K+                           +A  +
Sbjct: 122 CSCKSSITWSSIISGYCKF-----GCKV---------------------------EAFDL 149

Query: 443 FVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
           F  M  EG KA   TL   L  C+ L  +Q G  IH   +K+G+  ++FV   L+ MYAK
Sbjct: 150 FRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAK 209

Query: 503 CGRIQNAELLFK--DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
           C  +  AE LFK  + D  + + W +++ GYA NG+  +A++ F  M  +GV  +  TF 
Sbjct: 210 CKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFP 269

Query: 561 GVLSACS-----------HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLD 609
            +L+ACS           H  +V  G       + VY    LV+ YA       + G L 
Sbjct: 270 TILTACSSVLARCFGEQVHGFIVKSGFG-----SNVYVQSALVDMYA-------KCGDLK 317

Query: 610 EAFEMVKGMK 619
            A  M++ M+
Sbjct: 318 NAKNMLETME 327



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/411 (20%), Positives = 171/411 (41%), Gaps = 98/411 (23%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS V+ Q+  +    K G ++ A  +   M   + V++NS++  + ++G   +A +LF+ 
Sbjct: 297 GSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKN 356

Query: 72  MPQRN--------------------------------------LVSWNSMIAGYLHNDKV 93
           M  RN                                      LVS N+++  Y     +
Sbjct: 357 MHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVS-NALVDMYAKTGDM 415

Query: 94  KEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF---------------------- 131
             A  +F+KM   D+ SW  ++T Y +    E++ ++F                      
Sbjct: 416 DCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSAC 475

Query: 132 --------------DLLPN--KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN 175
                         D + +  +   + +N++VA YAK G  ++A  +  +M  K++++W 
Sbjct: 476 AELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWT 535

Query: 176 SMLSGYTKNGEMHLASKFFEAM----EERDVVSWNLMLDGYVELDDLDSAWKFFQKI--- 228
           +++ GY +NG+   + KF++AM       D +++  +L        +D   K+FQ++   
Sbjct: 536 AIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKV 595

Query: 229 ------PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE 281
                 PE     +  M+  + R+G++ EA++L DQM ++ +   W ++++A      +E
Sbjct: 596 YGIKPGPEH----YACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLE 651

Query: 282 EAARL---FIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
            A R      E+   N + +  + + Y    K ++  ++   M  K I  +
Sbjct: 652 LAERAATNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKE 702


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  368 bits (945), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 209/614 (34%), Positives = 338/614 (55%), Gaps = 22/614 (3%)

Query: 114 MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS 173
           ++  Y + G    A  LFD +P K  T  WN +++ +AK GN + A+++ D +P  + VS
Sbjct: 54  LLNLYVKTGSSSDAHRLFDEMPLKT-TFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVS 112

Query: 174 WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE-------LDDLDSAWKFFQ 226
           W +M+ GY   G    A   F  M    +          +        LD       F  
Sbjct: 113 WTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVV 172

Query: 227 KIPEQNVVSWV-TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAAR 285
           K+ +  VV    ++L+ YA+ G  + A+ +FD+M +++   WN MI+ ++Q  Q + A  
Sbjct: 173 KLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALA 232

Query: 286 LFIEMPERNPVSWTTMIDGYVR----IAKLDEARRLLDQMPYK-NIAAQTAMISGYVQNK 340
           LF +M + + VSW ++I GY      I  L+    +L     K +     +++S     +
Sbjct: 233 LFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRE 292

Query: 341 RMDEANQIFDKIGTHDV----VCWNVMIKGYAQCGRMDEA--INLFRQMVNKDIVTWNTM 394
            +    QI   I   DV       N +I  YA+ G ++ A  I       + +++ + ++
Sbjct: 293 SLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSL 352

Query: 395 IAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
           + GY +I  +D A  IF+ + K R+ V+W A+I G+ QN    DAL +F LM +EG K +
Sbjct: 353 LDGYFKIGDIDPARAIFDSL-KHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPN 411

Query: 455 HSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
           + TLA  LS  + LA+L  G+Q+H +AI+   V+ + VGN+LITMY++ G I++A  +F 
Sbjct: 412 NYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFN 471

Query: 515 D-ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVD 573
                 D ++W S+I   A +G   EAI+LFE+M+   + PD +T++GVLSAC+HVGLV+
Sbjct: 472 HICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVE 531

Query: 574 GGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
            G   F  M  V+ IEP   HYACMIDLL RAG L+EA+  ++ M I+P+   WG+LL +
Sbjct: 532 QGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSS 591

Query: 634 CRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQP 693
           CR+H+ + L ++A EKL  ++P  +  Y  L+N  +  G+W++  KVR SM+    +K+ 
Sbjct: 592 CRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQ 651

Query: 694 GCSWIEVKNQIHTF 707
           G SW+++KN++H F
Sbjct: 652 GFSWVQIKNKVHIF 665



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 148/569 (26%), Positives = 275/569 (48%), Gaps = 55/569 (9%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
           +K  L+ +G     VF  N  +    K+G   +A ++F +M  K T ++N+++SA+AK G
Sbjct: 39  IKHGLRYLG-----VFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAG 93

Query: 61  RVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMIT 116
            ++ AR++F+++PQ + VSW +MI GY H    K A   F +M      P  F++  ++ 
Sbjct: 94  NLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLA 153

Query: 117 CYTRKGELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS 173
                  L+  +++      L         N+++  YAK G+   AK + D M  K+  +
Sbjct: 154 SCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTST 213

Query: 174 WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE-------LDDLDSAWKFFQ 226
           WN+M+S + +  +  LA   F+ M + D+VSWN ++ GY         L+      K   
Sbjct: 214 WNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSS 273

Query: 227 KIPEQNVVSWVTMLSGYARN-----GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIE 281
             P++  +   ++LS  A       G+ + A  +   + I   V  NA+I+ Y + G +E
Sbjct: 274 LKPDKFTLG--SVLSACANRESLKLGKQIHAHIVRADVDIAGAVG-NALISMYAKSGAVE 330

Query: 282 EAARL--FIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQN 339
            A R+      P  N +++T+++DGY +I  +D AR + D + ++++ A TAMI GY QN
Sbjct: 331 VAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQN 390

Query: 340 KRMDEANQIF-------DKIGTHDVVCWNVMIKGYAQC--GRMDEAINLFRQMVNKDIVT 390
             + +A  +F        K   + +     +I   A    G+   A+ +  + V+  +  
Sbjct: 391 GLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSS-VSV 449

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
            N +I  Y++   + DA KIF  +   R+T++W ++I    Q+    +A+++F  M +  
Sbjct: 450 GNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRIN 509

Query: 451 KKADHSTLACALSACAHLAALQLGRQ-------IHHLAIKSGYVNDLFVGNSLITMYAKC 503
            K DH T    LSAC H+  ++ G+        +H++   S +         +I +  + 
Sbjct: 510 LKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHY------ACMIDLLGRA 563

Query: 504 GRIQNAELLFKDADPV--DVISWNSLIAG 530
           G ++ A    ++  P+  DV++W SL++ 
Sbjct: 564 GLLEEAYNFIRNM-PIEPDVVAWGSLLSS 591



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 139/497 (27%), Positives = 226/497 (45%), Gaps = 83/497 (16%)

Query: 247 GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYV 306
           GR + AR +   +    V   N ++  YV+ G   +A RLF EMP +   SW T++  + 
Sbjct: 31  GRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHA 90

Query: 307 RIAKLDEARRLLDQMPYKNIAAQTAMISGY------------------------------ 336
           +   LD ARR+ D++P  +  + T MI GY                              
Sbjct: 91  KAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTN 150

Query: 337 -----VQNKRMDEANQIFD---KIGTHDVV-CWNVMIKGYAQCGRMDEAINLFRQMVNKD 387
                   + +D   ++     K+G   VV   N ++  YA+CG    A  +F +M  KD
Sbjct: 151 VLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKD 210

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMT 447
             TWNTMI+ + Q  Q D A+ +F++M    + VSWN++I+G+    + + AL+ F  M 
Sbjct: 211 TSTWNTMISMHMQFCQFDLALALFDQMTD-PDIVSWNSIITGYCHQGYDIRALETFSFML 269

Query: 448 QEGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI 506
           +    K D  TL   LSACA+  +L+LG+QIH   +++       VGN+LI+MYAK G +
Sbjct: 270 KSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAV 329

Query: 507 QNAELL---------------------FK--DADPV----------DVISWNSLIAGYAI 533
           + A  +                     FK  D DP           DV++W ++I GYA 
Sbjct: 330 EVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQ 389

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVE 593
           NG  ++A+ LF  M+ EG  P+  T   VLS  S +  +D G +L      +  +  +  
Sbjct: 390 NGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSV 449

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSE- 652
             A +I + SR+G + +A ++   +    +   W +++ +   H    LG  A+E   + 
Sbjct: 450 GNA-LITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQH---GLGNEAIELFEKM 505

Query: 653 ----LEPQKTSCYALLS 665
               L+P   +   +LS
Sbjct: 506 LRINLKPDHITYVGVLS 522



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 142/338 (42%), Gaps = 70/338 (20%)

Query: 308 IAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367
           I +   AR +   + Y  +     +++ YV+     +A+++FD++       WN ++  +
Sbjct: 30  IGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAH 89

Query: 368 AQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
           A+ G +D A  +F ++   D V+W TMI GY  +     AV  F  M           + 
Sbjct: 90  AKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRM-----------VS 138

Query: 428 SGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV 487
           SG    +F                     T    L++CA   AL +G+++H   +K G  
Sbjct: 139 SGISPTQF---------------------TFTNVLASCAAAQALDVGKKVHSFVVKLGQS 177

Query: 488 NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
             + V NSL+ MYAKCG    A+++F      D  +WN++I+ +        A+ LF++M
Sbjct: 178 GVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQM 237

Query: 548 VMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGR 607
                 PD V++  +++   H G               Y I  L                
Sbjct: 238 ----TDPDIVSWNSIITGYCHQG---------------YDIRAL---------------- 262

Query: 608 LDEAFE-MVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
             E F  M+K   +KP+    G++L AC   +++KLG+
Sbjct: 263 --ETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGK 298


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  368 bits (944), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 241/740 (32%), Positives = 395/740 (53%), Gaps = 81/740 (10%)

Query: 65  ARKLFEQMPQR--NLVSWNSMIAGYLHNDKVKEARELFDKMF----RPD--LFSWALMIT 116
           A  LF+++P R   L   N ++  Y  + + KEA  LF  +     +PD    S    I 
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 117 CYTRKGELEKAREL----FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV 172
             +  G+L +        F L+   +  +   ++V  Y K  N N+ +++ D M  +N+V
Sbjct: 104 AGSLDGKLGRQVHCQCVKFGLV---DHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVV 160

Query: 173 SWNSMLSGYTKNG------EMHLASKFFEAMEERDVVSW---NLMLDGYV----ELDDLD 219
           SW S+L+GY+ NG      E+    ++   +  R  VS     L+ +G V    ++  + 
Sbjct: 161 SWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMV 220

Query: 220 SAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ 279
               F + IP  N     +++S Y+R G + +AR +FD+M IR+ V WN+MIA YV+ GQ
Sbjct: 221 VKHGFEEAIPVFN-----SLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQ 275

Query: 280 IEEAARLFIEMP----ERNPVSWTTMIDGY-----VRIAKLDEARRLLDQMPYKNIAAQT 330
             E   +F +M     +   +++ ++I        + + KL + + L        I   T
Sbjct: 276 DLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVI-T 334

Query: 331 AMISGYVQNKRMDEANQIFDKIGT-HDVVCWNVMIKGYAQCGRMDEAINLFRQM------ 383
           A++    + K MD+A  +F  +    +VV W  MI G  Q G  D+A+NLF QM      
Sbjct: 335 ALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVK 394

Query: 384 --------------------VNKDIVTWN---------TMIAGYAQIRQMDDAVKIFEEM 414
                               ++ +++  N          ++  Y ++    DAVK+FE +
Sbjct: 395 PNHFTYSAILTVHYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEII 454

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH-LAALQL 473
            + ++ ++W+A+++G+ Q     +A K+F  + +EG K +  T +  ++ACA   AA + 
Sbjct: 455 -EAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQ 513

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           G+Q H  AIK    N L V ++L+TMYAK G I +A  +FK     D++SWNS+I+GY+ 
Sbjct: 514 GKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQ 573

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVE 593
           +G A +A+++F+EM    +  D VTFIGV++AC+H GLV+ G K F  M   + I P ++
Sbjct: 574 HGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMK 633

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653
           HY+CMIDL SRAG L++A  ++  M   P A +W TLLGA R+H+N++LG +A EKL  L
Sbjct: 634 HYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLISL 693

Query: 654 EPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPK 713
           +P+ ++ Y LLSNM+A AG W E   VR  M+    +K+PG SWIEVKN+ ++FL+GD  
Sbjct: 694 QPEDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLT 753

Query: 714 QCRTAEICNTLKTLAAQIRN 733
              + +I + L  L+ ++++
Sbjct: 754 HPLSNQIYSKLSELSIRLKD 773



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 108/483 (22%), Positives = 206/483 (42%), Gaps = 95/483 (19%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM------PQRNLVS- 79
           K+  V +  ++F +M ++N V++ S+++ Y+ NG      +LF QM      P R  VS 
Sbjct: 140 KTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVST 199

Query: 80  --------------------------------WNSMIAGYLHNDKVKEARELFDKMFRPD 107
                                           +NS+I+ Y     +++AR++FDKM   D
Sbjct: 200 VIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRD 259

Query: 108 LFSWALMITCYTRKGELEKARELFDLL------PNK------------------------ 137
             +W  MI  Y R G+  +  E+F+ +      P                          
Sbjct: 260 WVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQC 319

Query: 138 --------EDTACWNAMVAGYAKIGNYNEAKKLLDAM-PSKNIVSWNSMLSGYTKNGEMH 188
                    D     A++   +K    ++A  L   M   KN+VSW +M+SG  +NG   
Sbjct: 320 KALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGND 379

Query: 189 LASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYA 244
            A   F  M    V     +++ +L  +  +   +   +  +   E++      +L  Y 
Sbjct: 380 QAVNLFSQMRREGVKPNHFTYSAILTVHYPVFVSEMHAEVIKTNYERSSSVGTALLDAYV 439

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTT 300
           + G  ++A ++F+ +  ++++AW+AM+A Y Q G+ EEAA+LF ++ +     N  ++++
Sbjct: 440 KLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSS 499

Query: 301 MIDGYVRIAKLDEARRLLDQMPYK-----NIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
           +I+         E  +       K      +   +A+++ Y +   +D A+++F +    
Sbjct: 500 VINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKER 559

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIF 411
           D+V WN MI GY+Q G+  +A+ +F +M    ++ D VT+  +I        ++   K F
Sbjct: 560 DLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYF 619

Query: 412 EEM 414
             M
Sbjct: 620 NSM 622



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/441 (21%), Positives = 198/441 (44%), Gaps = 34/441 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I+   + G + +A  +F +M  ++ VT+NSMI+ Y +NG+  +  ++F +M    + 
Sbjct: 233 NSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVK 292

Query: 79  SWNSMIAGYLHNDKVKEAREL----------FDKMFRPDLFSWALMITCYTRKGELEKAR 128
             +   A  + +      REL              F  D      ++   ++  E++ A 
Sbjct: 293 PTHMTFASVIKS--CASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDAL 350

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSMLSGYTKN 184
            LF L+   ++   W AM++G  + G  ++A  L   M  +    N  +++++L+ +   
Sbjct: 351 SLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPV 410

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYA 244
               + ++  +   ER       +LD YV+L +   A K F+ I  +++++W  ML+GYA
Sbjct: 411 FVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYA 470

Query: 245 RNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLF----IEMPERNPV 296
           + G   EA +LF Q+       N   ++++I A        E  + F    I+M   N +
Sbjct: 471 QTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNAL 530

Query: 297 SWTT-MIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
             ++ ++  Y +   +D A  +  +   +++ +  +MISGY Q+ +  +A ++FD++   
Sbjct: 531 CVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKR 590

Query: 356 ----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT-----WNTMIAGYAQIRQMDD 406
               D V +  +I      G +++    F  M+N   +      ++ MI  Y++   ++ 
Sbjct: 591 NMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEK 650

Query: 407 AVKIFEEMGKRRNTVSWNALI 427
           A+ I  EM        W  L+
Sbjct: 651 AMGIINEMPFPPGATVWRTLL 671



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 118/248 (47%), Gaps = 21/248 (8%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR----NLVSWNS 82
           K G   +A+K+F  +  K+ + +++M++ YA+ G   +A KLF Q+ +     N  +++S
Sbjct: 440 KLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSS 499

Query: 83  MIAGYLHNDKVKEARELFD----KM-FRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
           +I          E  + F     KM     L   + ++T Y ++G ++ A E+F     +
Sbjct: 500 VINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFK-RQKE 558

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASKF 193
            D   WN+M++GY++ G   +A ++ D M  +N+    V++  +++  T  G +    K+
Sbjct: 559 RDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKY 618

Query: 194 FEAMEERDVVS-----WNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSWVTMLSGYARNG 247
           F +M     ++     ++ M+D Y     L+ A     ++P       W T+L G AR  
Sbjct: 619 FNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLL-GAARVH 677

Query: 248 RMLEARRL 255
           R +E   L
Sbjct: 678 RNVELGEL 685



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 85/160 (53%), Gaps = 15/160 (9%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL---- 77
           +T   K G ++ A ++F +  +++ V++NSMIS Y+++G+   A ++F++M +RN+    
Sbjct: 537 VTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDA 596

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFD 132
           V++  +I    H   V++ ++ F+ M       P +  ++ MI  Y+R G LEKA  + +
Sbjct: 597 VTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIIN 656

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNE-----AKKLLDAMP 167
            +P       W  ++ G A++    E     A+KL+   P
Sbjct: 657 EMPFPPGATVWRTLL-GAARVHRNVELGELAAEKLISLQP 695


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  368 bits (944), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 249/867 (28%), Positives = 401/867 (46%), Gaps = 185/867 (21%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR---- 105
           N ++++YAK  R++ AR++F+ MP RN VSW  +I+G++ +   ++A  LF  M R    
Sbjct: 104 NHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGLPEDAFPLFRAMLREGPG 163

Query: 106 -------------------PDLFSWALMITCYTRKGELEK-------------------- 126
                              PD   +A+ +     K E                       
Sbjct: 164 CRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNTTVCNALISMYGSCSVGPP 223

Query: 127 --ARELFDLLPNKEDTACWNAMVAGYAKIGN------------YNEAK------------ 160
             A+ +FD  P + D   WNA+++ YAK G+            Y+++             
Sbjct: 224 ILAQRVFDTTPVR-DLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEHTFGS 282

Query: 161 --------------------KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER 200
                               ++L +  S ++   ++++S + ++G +  A   +  ++ER
Sbjct: 283 LITATYLSSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKER 342

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ---NVVSWVTMLSGYA---------RNGR 248
           + V+ N ++ G V+    ++A + F    +    NV ++V +LS  A         R GR
Sbjct: 343 NAVTLNGLIAGLVKQQHGEAAAEIFMGARDSAAVNVDTYVVLLSAIAEFSTAEQGLRKGR 402

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMI-----D 303
            + A  L      R +   N ++  Y + G I++A R+F  M  R+ +SW T+I     +
Sbjct: 403 EVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIITALDQN 462

Query: 304 GYVRIAKLDEARRLLDQMPYKNIAA----------------------------------Q 329
           GY   A ++      + +   N AA                                   
Sbjct: 463 GYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTSVS 522

Query: 330 TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC-GRMDEAINLFRQM----- 383
            A++  Y +  RM E  +IF+ +  HDVV WN ++   A     + E++ +F  M     
Sbjct: 523 NALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGL 582

Query: 384 ----------------------------------VNKDIVTWNTMIAGYAQIRQMDDAVK 409
                                             V +D    N +++ YA+   +D   +
Sbjct: 583 VPNKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCER 642

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           +F  M  RR+ +SWN++ISG++ N    +A+    LM    +  DH T +  L+ACA +A
Sbjct: 643 LFSRMSGRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNACASVA 702

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
           AL+ G ++H   ++S   +D+ V ++L+ MY+KCGRI  A  +F      +  SWNS+I+
Sbjct: 703 ALERGMEMHAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMIS 762

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE 589
           GYA +G   +A+++FEEM   G +PD VTF+ VLSACSH GLV+ GL  FE M E Y I 
Sbjct: 763 GYARHGLGRKALEIFEEMQESGESPDHVTFVSVLSACSHAGLVERGLDYFELM-EDYGIL 821

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN---IKLGRIA 646
           P +EHY+C+IDLL RAG LD+  E +K M +KPN  IW T+L AC+  ++   I LG  A
Sbjct: 822 PRIEHYSCVIDLLGRAGELDKIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDLGTEA 881

Query: 647 VEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHT 706
              L ELEPQ    Y L S  HA  GRW++  K R +M+G+  +K+ G SW+ + + +HT
Sbjct: 882 SRMLLELEPQNPVNYVLSSKFHAAIGRWEDTAKARAAMKGAAVKKEAGRSWVTLTDGVHT 941

Query: 707 FLSGDPKQCRTAEICNTLKTLAAQIRN 733
           F++GD     T EI   L  L  +IRN
Sbjct: 942 FIAGDRSHPNTKEIYEKLNFLIQKIRN 968



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 161/768 (20%), Positives = 299/768 (38%), Gaps = 200/768 (26%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM----------PQRNLVSWNSM 83
           A ++F     ++ +T+N+++S YAK G       LF  M          P  +  ++ S+
Sbjct: 226 AQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEH--TFGSL 283

Query: 84  I-AGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           I A YL +  +    +LF ++ +     DL+  + +++ + R G L++A++++ L   + 
Sbjct: 284 ITATYLSSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIY-LGLKER 342

Query: 139 DTACWNAMVAGYAK-------------------------------IGNYNEAKK------ 161
           +    N ++AG  K                               I  ++ A++      
Sbjct: 343 NAVTLNGLIAGLVKQQHGEAAAEIFMGARDSAAVNVDTYVVLLSAIAEFSTAEQGLRKGR 402

Query: 162 ------LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML-----D 210
                 L      + I   N +++ Y K G +  A + F+ ME RD +SWN ++     +
Sbjct: 403 EVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIITALDQN 462

Query: 211 GYVELDDLDSAWKFFQKIPEQN--VVSWVTMLSG-------------------------- 242
           GY E   ++        I   N   +S ++  +G                          
Sbjct: 463 GYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTSVS 522

Query: 243 ------YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV-QRGQIEEAARLFIEMPER-- 293
                 Y   GRM E   +F+ M   +VV+WN+++      +  I E+ ++F  M +   
Sbjct: 523 NALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGL 582

Query: 294 --NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI----AAQTAMISGYVQNKRMDEANQ 347
             N V++   +     ++ L+  +++   M    +    A   A++S Y ++  +D   +
Sbjct: 583 VPNKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCER 642

Query: 348 IFDKI-GTHDVVCWNVMIKGYAQCGRMDEAINL--------------------------- 379
           +F ++ G  D + WN MI GY   G + EA++                            
Sbjct: 643 LFSRMSGRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNACASVA 702

Query: 380 ------------FRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
                        R  +  D+V  + ++  Y++  ++D A K+F  M + +N  SWN++I
Sbjct: 703 ALERGMEMHAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHSMSQ-KNEFSWNSMI 761

Query: 428 SGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV 487
           SG+ ++     AL+IF  M + G+  DH T    LSAC+H   ++ G             
Sbjct: 762 SGYARHGLGRKALEIFEEMQESGESPDHVTFVSVLSACSHAGLVERGL------------ 809

Query: 488 NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
            D F    L+  Y    RI++   +      +D++            G A E  K+ E M
Sbjct: 810 -DYF---ELMEDYGILPRIEHYSCV------IDLL------------GRAGELDKIQEYM 847

Query: 548 VMEGVAPDPVTFIGVLSACS---HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSR 604
               + P+ + +  VL AC    H   +D G +    + E+    P+  +Y       + 
Sbjct: 848 KRMPMKPNTLIWRTVLVACQQSKHRAKIDLGTEASRMLLELEPQNPV--NYVLSSKFHAA 905

Query: 605 AGRLDE---AFEMVKGMKIKPNAG-IWGTL-------LGACRMHQNIK 641
            GR ++   A   +KG  +K  AG  W TL       +   R H N K
Sbjct: 906 IGRWEDTAKARAAMKGAAVKKEAGRSWVTLTDGVHTFIAGDRSHPNTK 953



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 147/297 (49%), Gaps = 38/297 (12%)

Query: 361 NVMIKGY-AQCGRMDEAINL--FRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
           +V+++G    C    E+++L   ++ +  D+   N ++  YA+  ++D A ++F+ M   
Sbjct: 70  DVLLRGRRPGCDASPESLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGM-PG 128

Query: 418 RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK--KADHSTLACALSACAHLAALQLG- 474
           RN VSW  LISG + +    DA  +F  M +EG   +    T    L AC      +LG 
Sbjct: 129 RNAVSWTCLISGHVLSGLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGF 188

Query: 475 -RQIHHLAIKSGYVNDLFVGNSLITMYAKC--GRIQNAELLFKDADPV-DVISWNSLIAG 530
             Q+H L  K+ + ++  V N+LI+MY  C  G    A+ +F D  PV D+I+WN+L++ 
Sbjct: 189 AVQVHGLVSKTEFTSNTTVCNALISMYGSCSVGPPILAQRVF-DTTPVRDLITWNALMSV 247

Query: 531 YAINGNATEAIKLFEEMVMEG----VAPDPVTFIGV-----LSACSHVGLVDGGLKLF-- 579
           YA  G+A     LF  M  +     + P   TF  +     LS+CS +GL+D   +LF  
Sbjct: 248 YAKRGDAICTFTLFRAMQYDDSGIELRPTEHTFGSLITATYLSSCS-LGLLD---QLFVR 303

Query: 580 ----ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLG 632
                C +++Y    LV  +A       R G LDEA ++  G+K +    + G + G
Sbjct: 304 VLKSGCSSDLYVGSALVSAFA-------RHGMLDEAKDIYLGLKERNAVTLNGLIAG 353


>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 819

 Score =  367 bits (943), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 229/747 (30%), Positives = 379/747 (50%), Gaps = 64/747 (8%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR---- 105
           N ++  Y+  GR+ DAR LF++MP RNLVSW S+I+ Y  + +   A  LF    +    
Sbjct: 57  NLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQKASCE 116

Query: 106 -PDLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNEAKK 161
            P+ F  A ++   T+   +    ++  +   L    +     A++  YAK+G  +EA  
Sbjct: 117 VPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAML 176

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE----LDD 217
           +  A+P +  V+WN++++GY + G   +A + F+ M    V     +L   V     L  
Sbjct: 177 VFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGF 236

Query: 218 LDSAWKF----FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
           L+   +     ++   E +      ++  Y +  R+  AR+LFD M  RN+V+W  MI+ 
Sbjct: 237 LEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISG 296

Query: 274 YVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA- 328
           Y+Q     EA  +F  M +     +  + T++++    +A + + R++   +   ++ A 
Sbjct: 297 YMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEAD 356

Query: 329 ---QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-- 383
              + A+I  Y + + + EA  +FD +   D + +N MI+GY++   + EA+N+F++M  
Sbjct: 357 EYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRF 416

Query: 384 -------------------------------------VNKDIVTWNTMIAGYAQIRQMDD 406
                                                 + D+   + +I  Y++   ++D
Sbjct: 417 FSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVND 476

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
           A  +F  M   ++ V WN++I G  QNE   +A+K+F  +   G   +  T    ++  +
Sbjct: 477 AKTVFN-MLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVAS 535

Query: 467 HLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNS 526
            LA++  G+Q H   IK+G  ND  V N+LI MYAKCG I+   +LF+     DVI WNS
Sbjct: 536 TLASMFHGQQFHAWIIKAGVDNDPHVSNALIDMYAKCGFIKEGRMLFESTCGEDVICWNS 595

Query: 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVY 586
           +I  YA +G+A EA+++F  M    V P+ VTF+GVLSAC+H G V  GL  F  M   Y
Sbjct: 596 MITTYAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVLSACAHAGFVGEGLNHFNSMKSNY 655

Query: 587 AIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIA 646
            IEP +EHYA +++L  R+G+L  A E ++ M IKP A +W +LL AC +  N ++GR A
Sbjct: 656 DIEPGIEHYASVVNLFGRSGKLHAAKEFIERMPIKPAAAVWRSLLSACHLFGNAEIGRYA 715

Query: 647 VEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHT 706
            E     +P  +  Y LLSN++A  G W +V  +R  M+ SG  K+ GCSWIEV  ++HT
Sbjct: 716 AEMALLADPTDSGPYVLLSNIYASKGLWADVHNLRQQMDSSGTVKETGCSWIEVTKEVHT 775

Query: 707 FLSGDPKQCRTAEICNTLKTLAAQIRN 733
           F+    +      I + L  L + I+N
Sbjct: 776 FIVRGREHPEAELIYSVLDELTSLIKN 802



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 135/276 (48%), Gaps = 33/276 (11%)

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMG 415
           D+   N++++GY+  GR+ +A +LF +M ++++V+W ++I+ Y Q  + D A+ +F    
Sbjct: 52  DLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQ 111

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
           K    V           NEF                      LA  L AC    A+ LG 
Sbjct: 112 KASCEVP----------NEF---------------------LLASVLRACTQSKAVSLGE 140

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
           Q+H +A+K     +++VG +LI +YAK G +  A L+F        ++WN++I GYA  G
Sbjct: 141 QVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQIG 200

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHY 595
               A++LF+ M +EGV PD       +SACS +G ++GG ++        A E      
Sbjct: 201 CGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFLEGGRQI-HGYAYRSATETDTSVI 259

Query: 596 ACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
             +IDL  +  RL  A ++   M+ + N   W T++
Sbjct: 260 NVLIDLYCKCSRLSAARKLFDCMEYR-NLVSWTTMI 294



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 6/178 (3%)

Query: 472 QLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGY 531
           +L   IH  A  +G ++DLF+ N L+  Y+  GR+++A  LF      +++SW S+I+ Y
Sbjct: 35  RLNPAIHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMY 94

Query: 532 AINGNATEAIKLFEEMVMEGV-APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP 590
             +G    AI LF          P+      VL AC+    V  G ++     ++  ++ 
Sbjct: 95  TQHGRDDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKL-DLDA 153

Query: 591 LVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVE 648
            V     +I+L ++ G +DEA  +   + ++     W T++     +  I  G +A+E
Sbjct: 154 NVYVGTALINLYAKLGCMDEAMLVFHALPVRTPV-TWNTVITG---YAQIGCGGVALE 207


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  367 bits (943), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 216/672 (32%), Positives = 348/672 (51%), Gaps = 69/672 (10%)

Query: 123 ELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYT 182
           E +K  + F    +  D++  + +   Y        A++L D +P+ +++ WN ++  Y 
Sbjct: 26  EAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRAYA 85

Query: 183 KNGEMHLASKFFEAMEERDV----VSWNLML---DGYVELDD---LDSAWKFFQKIPEQN 232
            NG    A   + +M    V     ++  +L    G + ++D   + S  K F    E +
Sbjct: 86  WNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGL--ESD 143

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE 292
           V     ++  YA+ G ++EA+RLF  M  R+VVAWNAMIA     G  ++A +L ++M E
Sbjct: 144 VFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQE 203

Query: 293 RNPVSWTTMIDGYVRIAKLDEA------------RRLLDQMPYKNIAAQTAMISGYVQNK 340
                 ++ I G +      +A            RR  D      +   T ++  Y + +
Sbjct: 204 EGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDN----GVVVGTGLLDMYAKCQ 259

Query: 341 RMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD------------- 387
            +  A +IFD +G  + V W+ MI GY     M EA+ LF QM+ KD             
Sbjct: 260 CLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVL 319

Query: 388 ---------------------------IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
                                      I+  NT+++ YA+   +DDA++ F+ M  + ++
Sbjct: 320 RACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPK-DS 378

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
           VS++A++SG +QN     AL IF +M   G   D +T+   L AC+HLAALQ G   H  
Sbjct: 379 VSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGY 438

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEA 540
            I  G+  D  + N+LI MY+KCG+I  A  +F   D  D++SWN++I GY I+G   EA
Sbjct: 439 LIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEA 498

Query: 541 IKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMID 600
           + LF +++  G+ PD +TFI +LS+CSH GLV  G   F+ M+  ++I P +EH  CM+D
Sbjct: 499 LGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVD 558

Query: 601 LLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSC 660
           +L RAG +DEA   ++ M  +P+  IW  LL ACR+H+NI+LG    +K+  L P+ T  
Sbjct: 559 ILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGN 618

Query: 661 YALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           + LLSN+++ AGRWD+   +R++ +  G +K PGCSWIE+   +H F+ GD    + ++I
Sbjct: 619 FVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQI 678

Query: 721 CNTLKTLAAQIR 732
              L+ L  +++
Sbjct: 679 NRKLEELLVEMK 690



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 138/591 (23%), Positives = 261/591 (44%), Gaps = 76/591 (12%)

Query: 27  KSGRVEEAIKIFSQM----SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNS 82
           +S  + EA KI        S  ++   + +   Y    +V  AR+LF+++P  +++ WN 
Sbjct: 20  QSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQ 79

Query: 83  MIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFD---LLP 135
           +I  Y  N     A +L+  M     RP+ +++  ++   +    +E   E+     +  
Sbjct: 80  IIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFG 139

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
            + D     A+V  YAK G   EA++L  +M  +++V+WN+M++G +  G    A +   
Sbjct: 140 LESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIM 199

Query: 196 AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP--------EQNVVSWVTMLSGYARNG 247
            M+E  +   +  + G +       A    + +         +  VV    +L  YA+  
Sbjct: 200 QMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQ 259

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN-----PVSWTTMI 302
            +L AR++FD M +RN V+W+AMI  YV    ++EA  LF +M  ++     PV+  +++
Sbjct: 260 CLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVL 319

Query: 303 DGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV 358
               ++  L   R+L    +      +I     ++S Y +   +D+A + FD +   D V
Sbjct: 320 RACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSV 379

Query: 359 CWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVT------------------------ 390
            ++ ++ G  Q G    A+++FR M    ++ D+ T                        
Sbjct: 380 SFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYL 439

Query: 391 -----------WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDA 439
                       N +I  Y++  ++  A ++F  M  R + VSWNA+I G+  +   ++A
Sbjct: 440 IVRGFATDTLICNALIDMYSKCGKISFAREVFNRM-DRHDIVSWNAMIIGYGIHGLGMEA 498

Query: 440 LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ-IHHLAIKSGYVNDLFVGNSLIT 498
           L +F  +   G K D  T  C LS+C+H   +  GR     ++     V  +     ++ 
Sbjct: 499 LGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVD 558

Query: 499 MYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
           +  + G I  A    ++   +P DV  W++L++   I+ N    I+L EE+
Sbjct: 559 ILGRAGLIDEAHHFIRNMPFEP-DVRIWSALLSACRIHKN----IELGEEV 604



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 2/176 (1%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           L AC    +L   ++IH   +K+    D  V + L  +Y  C ++  A  LF +     V
Sbjct: 15  LEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSV 74

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC 581
           I WN +I  YA NG    AI L+  M+  GV P+  T+  VL ACS +  ++ G+++   
Sbjct: 75  ILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHS- 133

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMH 637
             +++ +E  V     ++D  ++ G L EA  +   M  + +   W  ++  C ++
Sbjct: 134 HAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHR-DVVAWNAMIAGCSLY 188



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 9/139 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  I    K G++  A ++F++M + + V++N+MI  Y  +G   +A  LF  +    L 
Sbjct: 452 NALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLK 511

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARE 129
              +++  +++   H+  V E R  FD M R     P +     M+    R G +++A  
Sbjct: 512 PDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHH 571

Query: 130 LFDLLPNKEDTACWNAMVA 148
               +P + D   W+A+++
Sbjct: 572 FIRNMPFEPDVRIWSALLS 590


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  367 bits (943), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 206/634 (32%), Positives = 330/634 (52%), Gaps = 93/634 (14%)

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSG 242
           M LA + F  M E++ VSWN +L+GY +L D     K F K+ E        +  T+L G
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 243 -----------------------------------YARNGRMLEARRLFDQMPIRNVVAW 267
                                              Y++ G + +A ++F ++   +VVAW
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
           +AMI    Q+G  +EAA LF  M  +    N  + ++++     +  L   + +   +  
Sbjct: 121 SAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICK 180

Query: 324 KNIAA----QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY---AQCGRMDEA 376
               +       +I  Y++++ +++ N++F+ +   D+V WN ++ G+     CGR    
Sbjct: 181 YGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGR---G 237

Query: 377 INLFRQMV---------------------------------------NKDIVTWNTMIAG 397
             +F QM+                                       + D      ++  
Sbjct: 238 PRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDM 297

Query: 398 YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHST 457
           YA+ R ++DA   F+ +   R+  SW  +ISG+ Q +    A+K F  M +EG K +  T
Sbjct: 298 YAKARCLEDAGVAFDRL-VNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYT 356

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD 517
           LA  LS C+H+A L+ GRQ+H +A+K+G+  D+FVG++L+ +Y KCG +++AE +FK   
Sbjct: 357 LASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLI 416

Query: 518 PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLK 577
             D++SWN++I+GY+ +G   +A++ F  M+ EG+ PD  TFIGVLSACS +GLV+ G K
Sbjct: 417 SRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKK 476

Query: 578 LFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMH 637
            F+ M+++Y I P +EHYACM+D+L RAG+ +E    ++ M + P + IW T+LGAC++H
Sbjct: 477 RFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLH 536

Query: 638 QNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSW 697
            N+  G  A +KL E+EP   S Y LLSN+ A  GRWD+V  +R  M   G +K+PGCSW
Sbjct: 537 GNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSW 596

Query: 698 IEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           +EV  Q+H FLS D    +  EI   L  L   +
Sbjct: 597 VEVDGQVHVFLSQDGSHPKIREIYAKLDKLGQSL 630



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 150/664 (22%), Positives = 283/664 (42%), Gaps = 140/664 (21%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ--------------RN 76
           +E A ++F  M +KN V++N++++ YA+ G      KLF +M +              + 
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 77  LVSWNSMIAG-------------------------YLHNDKVKEARELFDKMFRPDLFSW 111
             +  S+  G                         Y     V +A ++F K+  PD+ +W
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120

Query: 112 ALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAM-- 166
           + MIT   ++G  ++A ELF L+  K    +    +++V+    +G+    + +   +  
Sbjct: 121 SAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICK 180

Query: 167 ---PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWK 223
               S N+VS N ++  Y K+  +   +K FEAM   D+VSWN +L G+ +        +
Sbjct: 181 YGFESDNLVS-NPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPR 239

Query: 224 -FFQKIPE---QNVVSWVTMLSGYA-----RNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
            F+Q + E    N+ +++++L   +       G+ + A  + +     + V   A++  Y
Sbjct: 240 IFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVG-TALVDMY 298

Query: 275 VQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----T 330
            +   +E+A   F  +  R+  SWT +I GY +  + ++A +   QM  + I        
Sbjct: 299 AKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLA 358

Query: 331 AMISGYVQNKRMDEANQIFD---KIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
           + +SG      ++   Q+     K G   D+   + ++  Y +CG M+ A  +F+ ++++
Sbjct: 359 SCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISR 418

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446
           DIV+WNT+I+GY+Q  Q +                                 AL+ F +M
Sbjct: 419 DIVSWNTIISGYSQHGQGE--------------------------------KALEAFRMM 446

Query: 447 TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI 506
             EG   D +T    LSAC+ +  ++ G++      +   ++ ++  N  I  YA C   
Sbjct: 447 LSEGIMPDEATFIGVLSACSFMGLVEEGKK------RFDSMSKIYGINPSIEHYA-C--- 496

Query: 507 QNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
                       VD++       G A  G   E     EEM    + P  + +  VL AC
Sbjct: 497 -----------MVDIL-------GRA--GKFNEVKIFIEEM---NLTPYSLIWETVLGAC 533

Query: 567 SHVGLVDGGLKLFECMTEVYAIEPLVE-HYACMIDLLSRAGRLDE-----AFEMVKGMKI 620
              G VD G K      +++ +EP+++  Y  + ++ +  GR D+     A    +G+K 
Sbjct: 534 KLHGNVDFGEK---AAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKK 590

Query: 621 KPNA 624
           +P  
Sbjct: 591 EPGC 594



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/413 (21%), Positives = 189/413 (45%), Gaps = 50/413 (12%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K G V +A+K+F+++   + V +++MI+   + G   +A +LF  M ++           
Sbjct: 98  KCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGA--------- 148

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACW 143
                             RP+ F+ + +++  T  G+L   + +   +     + D    
Sbjct: 149 ------------------RPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVS 190

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----E 199
           N ++  Y K     +  K+ +AM + ++VSWN++LSG+  +       + F  M     +
Sbjct: 191 NPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFK 250

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSGYARNGRMLEARRL 255
            ++ ++  +L     L D +   +    I     + +      ++  YA+   + +A   
Sbjct: 251 PNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVA 310

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKL 311
           FD++  R++ +W  +I+ Y Q  Q E+A + F +M       N  +  + + G   +A L
Sbjct: 311 FDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATL 370

Query: 312 DEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367
           +  R+L    +    + +I   +A++  Y +   M+ A  IF  + + D+V WN +I GY
Sbjct: 371 ENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGY 430

Query: 368 AQCGRMDEAINLFRQMVNKDIV----TWNTMIAGYAQIRQMDDAVKIFEEMGK 416
           +Q G+ ++A+  FR M+++ I+    T+  +++  + +  +++  K F+ M K
Sbjct: 431 SQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSK 483



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 154/337 (45%), Gaps = 31/337 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP----Q 74
           N  I    KS  VE+  K+F  M+  + V++N+++S +  +       ++F QM     +
Sbjct: 191 NPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFK 250

Query: 75  RNLVSWNSMI---AGYLHNDKVKEAR-ELFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
            N+ ++ S++   +  L  +  K+    +       D F    ++  Y +   LE A   
Sbjct: 251 PNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVA 310

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYT---- 182
           FD L N+ D   W  +++GYA+     +A K    M  + I     +  S LSG +    
Sbjct: 311 FDRLVNR-DIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMAT 369

Query: 183 -KNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
            +NG   L +   +A    D+   + ++D Y +   ++ A   F+ +  +++VSW T++S
Sbjct: 370 LENGR-QLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIIS 428

Query: 242 GYARNG---RMLEA-RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE---RN 294
           GY+++G   + LEA R +  +  + +   +  +++A    G +EE  + F  M +    N
Sbjct: 429 GYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGIN 488

Query: 295 PV--SWTTMIDGYVRIAKLDEARRLLDQM---PYKNI 326
           P    +  M+D   R  K +E +  +++M   PY  I
Sbjct: 489 PSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLI 525


>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 658

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 188/481 (39%), Positives = 286/481 (59%), Gaps = 5/481 (1%)

Query: 263 NVVAWNAMIAAYVQRGQ-IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           +V   N+++  Y    + +  A R+F EMPER+ +SW +MI  Y+   ++  A  LLD+M
Sbjct: 108 SVFVQNSLLGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKM 167

Query: 322 PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
           P +NI    +++ G  +   M+ A+ +F+++   + V WN MI GY + G +  A ++F 
Sbjct: 168 PERNIVTWNSVVCGLSKAGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFY 227

Query: 382 QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALK 441
           QM  K +V+W  MI+GYA    +  A  IF  M   +N VSWNA+ISG++ N     AL 
Sbjct: 228 QMPEKTVVSWTAMISGYATNGDLKSAENIFNHM-PVKNVVSWNAMISGYVHNHEFDQALC 286

Query: 442 IFVLMTQEGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500
           +F  M   G+ + D +TL   LSACAHL +L+ G+ I+    K+     + +GN+LI M+
Sbjct: 287 VFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMF 346

Query: 501 AKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
           AKCG ++NA+ +F       +I+W ++++G A+NG   EAI LF++M +EG  PD V FI
Sbjct: 347 AKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFI 406

Query: 561 GVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKI 620
            VLSAC+H GLV+ G ++F+ M + + I+P +EHY CM+DLL RAG+L+EA      M +
Sbjct: 407 AVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEAVRFTARMHL 466

Query: 621 KPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKV 680
           KPNA IW TLL  C++H N  L +   EK+ + EP   S   L+SN+ A  GRW++V   
Sbjct: 467 KPNAVIWATLLFCCKIHGNGDLLKSVTEKIMDQEPSNPSYLTLVSNLSASFGRWEDVLSF 526

Query: 681 RVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL--AAQIRNTPLAV 738
           RV+M     +K PGCS I+V N++H FL+ D +  +  EI   L     A ++  TP   
Sbjct: 527 RVAMRQQRMEKVPGCSSIQVGNRVHEFLAKDTRHVQRKEIYRALSHYKNATEMETTPFGF 586

Query: 739 I 739
           +
Sbjct: 587 L 587



 Score =  195 bits (496), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 146/545 (26%), Positives = 245/545 (44%), Gaps = 96/545 (17%)

Query: 32  EEAIKIFSQMS----QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGY 87
           +EA++++S+M     + N+ T+  ++  +  +  + D R                +I G 
Sbjct: 56  KEALRVYSRMKALMVEANSFTFTFLLKCFETSQALEDGR----------------VIHG- 98

Query: 88  LHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGE-LEKARELFDLLPNKEDTACWNAM 146
                     E+    F   +F    ++  Y    E L  A  +F+ +P + D   WN+M
Sbjct: 99  ----------EILKLGFGSSVFVQNSLLGFYANCSENLGSAYRVFEEMPER-DVISWNSM 147

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN 206
           ++ Y   G    A  LLD MP +NIV+WNS++ G +K G M LA   FE M  R+ VSWN
Sbjct: 148 ISAYMTRGEIQSAIGLLDKMPERNIVTWNSVVCGLSKAGNMELAHSVFEQMPLRNEVSWN 207

Query: 207 LMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA 266
            M+ GYV + D+ +A   F ++PE+ VVSW  M+SGYA NG +  A  +F+ MP++NVV+
Sbjct: 208 SMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVS 267

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
           WNAMI+ YV   + ++A  +F  M          +I+G  R           DQ    +I
Sbjct: 268 WNAMISGYVHNHEFDQALCVFHHM----------LINGECRP----------DQTTLISI 307

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
            +  A +      K +   N    K   H  +   N +I  +A+CG ++ A  +F  M  
Sbjct: 308 LSACAHLGSLEHGKWI---NSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSK 364

Query: 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVL 445
           + I+TW TM++G A   +  +A+ +F++                                
Sbjct: 365 RCIITWTTMVSGLAVNGKCREAINLFDK-------------------------------- 392

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS-GYVNDLFVGNSLITMYAKCG 504
           M  EG K D       LSAC H   ++ G+++    ++  G    +     ++ +  + G
Sbjct: 393 MCLEGTKPDDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAG 452

Query: 505 RIQNAELLFK--DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP--VTFI 560
           +++ A          P  VI W +L+    I+GN  + +K   E +M+    +P  +T +
Sbjct: 453 KLEEAVRFTARMHLKPNAVI-WATLLFCCKIHGNG-DLLKSVTEKIMDQEPSNPSYLTLV 510

Query: 561 GVLSA 565
             LSA
Sbjct: 511 SNLSA 515



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 183/363 (50%), Gaps = 51/363 (14%)

Query: 12  GSYVFNQNKKITQLGK-SGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFE 70
           GS VF QN  +      S  +  A ++F +M +++ +++NSMISAY   G +  A  L +
Sbjct: 106 GSSVFVQNSLLGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLD 165

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
           +MP+RN+V+WNS++ G      ++ A  +F++M   +  SW  MI+ Y R G++  A+ +
Sbjct: 166 KMPERNIVTWNSVVCGLSKAGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSI 225

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           F  +P K     W AM++GYA  G+   A+ + + MP KN+VSWN+M+SGY  N E   A
Sbjct: 226 FYQMPEK-TVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQA 284

Query: 191 SKFFEAM--------EERDVVS---------------W-----------------NLMLD 210
              F  M        ++  ++S               W                 N ++D
Sbjct: 285 LCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALID 344

Query: 211 GYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VA 266
            + +  D+++A + F  + ++ +++W TM+SG A NG+  EA  LFD+M +       V 
Sbjct: 345 MFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVI 404

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQM 321
           + A+++A    G +EE  R+F +M +   +      +  M+D   R  KL+EA R   +M
Sbjct: 405 FIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEAVRFTARM 464

Query: 322 PYK 324
             K
Sbjct: 465 HLK 467



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 74/148 (50%), Gaps = 5/148 (3%)

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS 495
           H +AL+++  M     +A+  T    L       AL+ GR IH   +K G+ + +FV NS
Sbjct: 55  HKEALRVYSRMKALMVEANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNS 114

Query: 496 LITMYAKCGR-IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP 554
           L+  YA C   + +A  +F++    DVISWNS+I+ Y   G    AI L ++M    +  
Sbjct: 115 LLGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNI-- 172

Query: 555 DPVTFIGVLSACSHVGLVDGGLKLFECM 582
             VT+  V+   S  G ++    +FE M
Sbjct: 173 --VTWNSVVCGLSKAGNMELAHSVFEQM 198


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 236/763 (30%), Positives = 384/763 (50%), Gaps = 81/763 (10%)

Query: 34  AIKIFSQMSQKNTVTYNSMISA---------YAKNGRVNDARKLFEQMPQRNLVSWNSMI 84
           A+K   Q  Q +     S +SA         Y K G + DA K+F++M +R + +WN+M+
Sbjct: 58  AVKALPQGQQLHARLLKSHLSAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMM 117

Query: 85  AGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPN---K 137
             ++ + K  EA EL+ +M       D  ++  ++      GE     E+  +       
Sbjct: 118 GAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFG 177

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDA--MPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
           E     NA++A Y K G+   A+ L D   M  ++ VSWNS++S +   G+   A   F 
Sbjct: 178 EFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFR 237

Query: 196 AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ--------NVVSWVTMLSGYARNG 247
            M+E  V S        ++  +  S  K    I           +V     +++ YA+ G
Sbjct: 238 RMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCG 297

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMID 303
           RM +A R+F  M  R+ V+WN +++  VQ     +A   F +M     + + VS   +I 
Sbjct: 298 RMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIA 357

Query: 304 GYVRIAKLDEARRL--------LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
              R   L   + +        LD     N+     +I  Y +   +      F+ +   
Sbjct: 358 ASGRSGNLLNGKEVHAYAIRNGLDS----NMQIGNTLIDMYAKCCCVKHMGYAFECMHEK 413

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----------------------------- 386
           D++ W  +I GYAQ     EAINLFR++  K                             
Sbjct: 414 DLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIH 473

Query: 387 ---------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHL 437
                    DI+  N ++  Y ++   D A + FE + + ++ VSW ++I+  + N   +
Sbjct: 474 GYVFKRDLADIMLQNAIVNVYGEVGHRDYARRAFESI-RSKDIVSWTSMITCCVHNGLPV 532

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
           +AL++F  + Q   + D   +  ALSA A+L++L+ G++IH   I+ G+  +  + +SL+
Sbjct: 533 EALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLV 592

Query: 498 TMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
            MYA CG ++N+  +F      D+I W S+I    ++G   EAI LF++M  E V PD +
Sbjct: 593 DMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHI 652

Query: 558 TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKG 617
           TF+ +L ACSH GL+  G + FE M   Y +EP  EHYACM+DLLSR+  L+EA++ V+ 
Sbjct: 653 TFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRS 712

Query: 618 MKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEV 677
           M IKP++ +W  LLGAC +H N +LG +A ++L + + + +  YAL+SN+ A  GRW++V
Sbjct: 713 MPIKPSSEVWCALLGACHIHSNKELGELAAKELLQSDTKNSGKYALISNIFAADGRWNDV 772

Query: 678 EKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           E+VR+ M+G+G +K PGCSWIEV N+IHTF++ D    +T +I
Sbjct: 773 EEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDI 815



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 89/435 (20%), Positives = 187/435 (42%), Gaps = 53/435 (12%)

Query: 3   ASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRV 62
           A+LKS  N  + V+  N  I    K GR+E+A ++F+ M  ++ V++N+++S   +N   
Sbjct: 273 AALKS--NHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELY 330

Query: 63  NDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKG 122
            DA   F                           R++ +   +PD  S   +I    R G
Sbjct: 331 RDALNYF---------------------------RDMQNSAQKPDQVSVLNLIAASGRSG 363

Query: 123 ELEKARELFDL-LPNKEDT--ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLS 179
            L   +E+    + N  D+     N ++  YAK           + M  K+++SW ++++
Sbjct: 364 NLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIA 423

Query: 180 GYTKNGEMHL-ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPE-------Q 231
           GY +N E HL A   F  ++ + +    +M+   +       +  F ++I          
Sbjct: 424 GYAQN-ECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLA 482

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
           +++    +++ Y   G    ARR F+ +  +++V+W +MI   V  G   EA  LF  + 
Sbjct: 483 DIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLK 542

Query: 292 ERN----PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMD 343
           + N     ++  + +     ++ L + + +   +  K    +    ++++  Y     ++
Sbjct: 543 QTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVE 602

Query: 344 EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI----VTWNTMIAGYA 399
            + ++F  +   D++ W  MI      G  +EAI LF++M ++++    +T+  ++   +
Sbjct: 603 NSRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACS 662

Query: 400 QIRQMDDAVKIFEEM 414
               M +  + FE M
Sbjct: 663 HSGLMVEGKRFFEIM 677



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 77/152 (50%), Gaps = 6/152 (3%)

Query: 420 TVSWNALISGFLQNEFH-LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIH 478
           ++S N L  G L   F  L  L    L T    +  HS L   L  C  + AL  G+Q+H
Sbjct: 13  SISVNTLNKGTLNPAFQSLTLLSTHPLATPSRLEHAHSLL---LDLCVAVKALPQGQQLH 69

Query: 479 HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNAT 538
              +KS      F+   L+ MY KCG +++A  +F +     + +WN+++  +  +G   
Sbjct: 70  ARLLKSHL--SAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYL 127

Query: 539 EAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
           EAI+L++EM + GVA D  TF  VL AC  +G
Sbjct: 128 EAIELYKEMRVLGVAIDACTFPSVLKACGALG 159


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 214/687 (31%), Positives = 368/687 (53%), Gaps = 65/687 (9%)

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           F P    +  MI   + +G+L +AR+L D +PN+ ++   + +++GY K GN   A+++ 
Sbjct: 39  FDPITSRFNFMIKDLSERGQLCQARQLLDQMPNR-NSFSIDIIISGYVKSGNLTVARRIF 97

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLD 219
           D    + +V+W +M+  Y+K+     A K F  M     + D V++  +L G    +DL+
Sbjct: 98  DDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTYITLLTG---CNDLE 154

Query: 220 SAWKFFQKIPE-------QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
            A + +Q   +        N     T+L  Y + G +  ARRLF +M   + V++N MI 
Sbjct: 155 VAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMIT 214

Query: 273 AYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRL----LDQMPYK 324
            Y   G  EEA  LF+EM     + +  ++  +I   V +      +++    +     +
Sbjct: 215 GYANNGLNEEAIELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIR 274

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ-- 382
           N+    A +  Y ++  ++E  ++F+++   D V +NV+I  YA  G++ E+I+LF++  
Sbjct: 275 NVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQ 334

Query: 383 -------------------------------------MVNKDIVTWNTMIAGYAQIRQMD 405
                                                M + D    N+++  YA+  + +
Sbjct: 335 FTTFDRKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFE 394

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
           +A +IF  +  R +TV W A+IS  +Q   H + LK+F  M +    AD +T AC L A 
Sbjct: 395 EADRIFLRLSSR-STVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFACVLKAS 453

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
           A+LA++ LG+Q+H   I+SG++N ++ G +L+ MYA C  I++A   F++    +V++WN
Sbjct: 454 ANLASILLGKQLHSCVIRSGFMN-VYSGCALLDMYANCASIKDAIKTFEEMSERNVVTWN 512

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
           +L++ YA NG+    +K FEEM+M G  PD V+F+ +L+ACSH  LV+ GLK F  M+ V
Sbjct: 513 ALLSAYAQNGDGKGTLKSFEEMIMSGYQPDSVSFLCILTACSHCRLVEEGLKYFNDMSGV 572

Query: 586 YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI 645
           Y + P  EHY  M+D L R+GR DEA +++  M  +P+  +W ++L +CR+H+N  L R 
Sbjct: 573 YNLAPKREHYTAMVDALCRSGRFDEAEKLMGQMPFEPDEIVWTSVLNSCRIHKNYALARK 632

Query: 646 AVEKLSELEPQKTSC-YALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQI 704
           A  +L  ++  + +  Y  +SN+ AEAG+WD V KV+ +M   G +K P  SW+E+K+++
Sbjct: 633 AAGQLFNMKVLRDAAPYVTMSNIFAEAGQWDSVVKVKKAMRDRGVRKLPAYSWVEIKHKV 692

Query: 705 HTFLSGDPKQCRTAEICNTLKTLAAQI 731
           H F + D K  +  EI   ++ LA Q+
Sbjct: 693 HVFSANDDKHPQQLEILRKIEMLAEQM 719



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 161/617 (26%), Positives = 277/617 (44%), Gaps = 96/617 (15%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I  L + G++ +A ++  QM  +N+ + + +IS Y K+G +  AR++F+   +R +V
Sbjct: 47  NFMIKDLSERGQLCQARQLLDQMPNRNSFSIDIIISGYVKSGNLTVARRIFDDTDERTVV 106

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDL- 133
           +W +MI  Y  +++  +A +LF +M R    PD  ++   IT  T   +LE A+EL+   
Sbjct: 107 AWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTY---ITLLTGCNDLEVAKELYQAH 163

Query: 134 -----LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
                L +  +    N ++  Y K G  + A++L   M   + VS+N M++GY  NG   
Sbjct: 164 AQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMITGYANNGLNE 223

Query: 189 LASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPE--------QNVVSW 236
            A + F  M+    +    ++  ++   V LDD      F Q+I          +NV   
Sbjct: 224 EAIELFVEMQNLGFKPSDFTFAAVISASVGLDDT----AFGQQIHGFVVKTSFIRNVFVG 279

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----E 292
              L  Y+++  + E R+LF++MP  + V++N +I AY   G+++E+  LF E+     +
Sbjct: 280 NAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFD 339

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQ----MPYKNIAAQTAMISGYVQNKRMDEANQI 348
           R    + TM+        L   R+L  Q    M   +     +++  Y +  + +EA++I
Sbjct: 340 RKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEADRI 399

Query: 349 FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAG------- 397
           F ++ +   V W  MI    Q G  +  + LF +M    V+ D  T+  ++         
Sbjct: 400 FLRLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFACVLKASANLASI 459

Query: 398 ---------------------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
                                      YA    + DA+K FEEM + RN V+WNAL+S +
Sbjct: 460 LLGKQLHSCVIRSGFMNVYSGCALLDMYANCASIKDAIKTFEEMSE-RNVVTWNALLSAY 518

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ-------IHHLAIK 483
            QN      LK F  M   G + D  +  C L+AC+H   ++ G +       +++LA K
Sbjct: 519 AQNGDGKGTLKSFEEMIMSGYQPDSVSFLCILTACSHCRLVEEGLKYFNDMSGVYNLAPK 578

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAINGNATEAI 541
             +        +++    + GR   AE L      +P D I W S++    I+ N   A 
Sbjct: 579 REHY------TAMVDALCRSGRFDEAEKLMGQMPFEP-DEIVWTSVLNSCRIHKNYALAR 631

Query: 542 K----LFEEMVMEGVAP 554
           K    LF   V+   AP
Sbjct: 632 KAAGQLFNMKVLRDAAP 648



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 183/408 (44%), Gaps = 40/408 (9%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP- 73
           VF  N  +    K   V E  K+F++M + + V+YN +I+AYA  G+V ++  LF+++  
Sbjct: 276 VFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQF 335

Query: 74  ---QRNLVSWNSMIAGYLHNDKVKEARELFDK----MFRPDLFSWALMITCYTRKGELEK 126
               R    + +M++    +  ++  R+L  +    M  PD      ++  Y + G+ E+
Sbjct: 336 TTFDRKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEE 395

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           A  +F  L ++  T  W AM++   + G +    KL   M   N+ +  +  +   K   
Sbjct: 396 ADRIFLRLSSRS-TVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFACVLK-AS 453

Query: 187 MHLASKFFEAMEERDVVSWNLM--------LDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
            +LAS          V+    M        LD Y     +  A K F+++ E+NVV+W  
Sbjct: 454 ANLASILLGKQLHSCVIRSGFMNVYSGCALLDMYANCASIKDAIKTFEEMSERNVVTWNA 513

Query: 239 MLSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEM---- 290
           +LS YA+NG      + F++M +     + V++  ++ A      +EE  + F +M    
Sbjct: 514 LLSAYAQNGDGKGTLKSFEEMIMSGYQPDSVSFLCILTACSHCRLVEEGLKYFNDMSGVY 573

Query: 291 ---PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK-------NIAAQTAMISGYVQNK 340
              P+R    +T M+D   R  + DEA +L+ QMP++       ++     +   Y   +
Sbjct: 574 NLAPKRE--HYTAMVDALCRSGRFDEAEKLMGQMPFEPDEIVWTSVLNSCRIHKNYALAR 631

Query: 341 RMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
           +   A Q+F+     D   +  M   +A+ G+ D  + + + M ++ +
Sbjct: 632 K--AAGQLFNMKVLRDAAPYVTMSNIFAEAGQWDSVVKVKKAMRDRGV 677


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  367 bits (941), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 229/751 (30%), Positives = 388/751 (51%), Gaps = 72/751 (9%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMI------AGYLHNDKVKEARELFDK-- 102
           ++IS+Y   G    A  +F     RN + WNS +      AG LH   ++  +EL  K  
Sbjct: 71  NLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLH-IVLEVFKELHGKGV 129

Query: 103 MFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEA 159
           +F  +++S AL  TC TR  ++    E+   L  +    D     A++  Y +     +A
Sbjct: 130 VFDSEVYSVALK-TC-TRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKA 187

Query: 160 KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVEL 215
            ++   MP+   + WN  +    ++ ++    + F  M+    + +  +   +L    ++
Sbjct: 188 NQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKM 247

Query: 216 DDLDSAWKF----FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
             L++A +     F+   + +V     ++S Y++NG++  ARR+FD M  RN  +WN+MI
Sbjct: 248 GALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMI 307

Query: 272 AAYVQRGQIEEAARLFIEMPERN--P--VSWTTMIDGYVRIAKLDEARRLLDQMPYK--- 324
           ++Y   G + +A  LF E+   +  P  V+W  ++ G+      +E   +L +M  +   
Sbjct: 308 SSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFK 367

Query: 325 ------------------------------------NIAAQTAMISGYVQNKRMDEANQI 348
                                               ++   T++I  YV+N  +  A  +
Sbjct: 368 PNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAV 427

Query: 349 FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQM 404
           FD +   ++  WN ++ GY+  G  ++A+ L  QM    +  D+VTWN MI+GYA     
Sbjct: 428 FDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCG 487

Query: 405 DDAVKIFEE---MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
            +A+ +  +   +G   N VSW ALISG  Q   + D+LK F  M QEG   + +++ C 
Sbjct: 488 KEALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCL 547

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           L ACA L+ LQ G++IH L+I++G++ D+FV  +LI MY+K   ++NA  +F+      +
Sbjct: 548 LRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTL 607

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC 581
            SWN +I G+AI G   EAI +F EM   GV PD +TF  +LSAC + GL+  G K F+ 
Sbjct: 608 ASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDS 667

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIK 641
           M   Y I P +EHY CM+DLL RAG LDEA++++  M +KP+A IWG LLG+CR+H+N+K
Sbjct: 668 MITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLK 727

Query: 642 LGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVK 701
               A + L +LEP  ++ Y L+ N+++   RW++++ +R  M  +G + +   SWI++ 
Sbjct: 728 FAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQIN 787

Query: 702 NQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            ++H F S +       +I   L  L ++++
Sbjct: 788 QRVHVFSSDEKPHPDAGKIYFELYQLVSEMK 818



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 198/419 (47%), Gaps = 46/419 (10%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP----Q 74
           N  I+   K+G++E A ++F  M  +NT ++NSMIS+YA  G +NDA  LF ++     +
Sbjct: 273 NPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMK 332

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKAREL 130
            ++V+WN +++G+  +   +E   +  +M    F+P+  S   ++   +  G L   +E 
Sbjct: 333 PDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKET 392

Query: 131 FD-LLPNKEDTACW--NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
              +L N  D   +   +++  Y K  +   A+ + D M ++NI +WNS++SGY+  G  
Sbjct: 393 HGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMF 452

Query: 188 HLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPE----QNVVSWVTM 239
             A +    ME+     D+V+WN M+ GY        A     +        NVVSW  +
Sbjct: 453 EDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSWTAL 512

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWT 299
           +SG ++ G   ++ + F QM    V+  +A I   ++      A      + +   +   
Sbjct: 513 ISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLR------ACASLSLLQKGKEIHCL 566

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
           ++ +G++                 +++   TA+I  Y ++  +  A+++F +I    +  
Sbjct: 567 SIRNGFI-----------------EDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLAS 609

Query: 360 WNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           WN MI G+A  G   EAI++F +M    V  D +T+  +++       + +  K F+ M
Sbjct: 610 WNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSM 668



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 149/346 (43%), Gaps = 31/346 (8%)

Query: 11  KGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQK----NTVTYNSMISAYAKNGRVNDAR 66
           K   +F  N  ++     G  E+A+++ +QM ++    + VT+N MIS YA  G   +A 
Sbjct: 432 KNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEAL 491

Query: 67  KLFEQMPQ----RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRK- 121
            +  Q        N+VSW ++I+G       +++ + F +M +  +   +  ITC  R  
Sbjct: 492 AVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRAC 551

Query: 122 ---GELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN 175
                L+K +E+  L       ED     A++  Y+K  +   A K+   + +K + SWN
Sbjct: 552 ASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWN 611

Query: 176 SMLSGYTKNGEMHLASKFFEAMEE----RDVVSWNLMLDGYVELDDLDSAWKFFQK-IPE 230
            M+ G+   G    A   F  M++     D +++  +L        +   WK+F   I +
Sbjct: 612 CMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITD 671

Query: 231 QNVVS----WVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EE 282
             +V     +  M+    R G + EA  L   MP++ +   W A++ +      +   E 
Sbjct: 672 YRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAET 731

Query: 283 AARLFIEMPERNPVSWTTMIDGYV---RIAKLDEARRLLDQMPYKN 325
           AA+   ++   N  ++  M++ Y    R   +D  R L+     +N
Sbjct: 732 AAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRN 777


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  367 bits (941), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 201/612 (32%), Positives = 339/612 (55%), Gaps = 23/612 (3%)

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW 205
           ++A Y+    +N+A  +L ++P   I S++S++   TK      +   F  M    ++  
Sbjct: 56  LIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPD 115

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV--------TMLSGYARNGRMLEARRLFD 257
           + +L    ++    SA+K  ++I   + VS +        +M   Y R GRM +AR++FD
Sbjct: 116 SHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFD 175

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDE 313
           +M  ++VV  +A++ AY ++G +EE  R+  EM     E N VSW  ++ G+ R     E
Sbjct: 176 RMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKE 235

Query: 314 ARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH--------DVVCWNVMIK 365
           A  +  ++ +         +S  + +    E   +   I  +        D    + MI 
Sbjct: 236 AVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMID 295

Query: 366 GYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFE---EMGKRRNTVS 422
            Y + G +   I+LF Q    +    N  I G ++   +D A+++FE   E     N VS
Sbjct: 296 MYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVS 355

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482
           W ++I+G  QN   ++AL++F  M   G K +H T+   L AC ++AAL  GR  H  A+
Sbjct: 356 WTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAV 415

Query: 483 KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIK 542
           +   ++++ VG++LI MYAKCGRI  ++++F      +++ WNSL+ G++++G A E + 
Sbjct: 416 RVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMS 475

Query: 543 LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLL 602
           +FE ++   + PD ++F  +LSAC  VGL D G K F+ M+E Y I+P +EHY+CM++LL
Sbjct: 476 IFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLL 535

Query: 603 SRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYA 662
            RAG+L EA++++K M  +P++ +WG LL +CR+  N+ L  IA EKL  LEP+    Y 
Sbjct: 536 GRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYV 595

Query: 663 LLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICN 722
           LLSN++A  G W EV+ +R  ME  G +K PGCSWI+VKN+++T L+GD    +  +I  
Sbjct: 596 LLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITE 655

Query: 723 TLKTLAAQIRNT 734
            +  ++ ++R +
Sbjct: 656 KMDEISKEMRKS 667



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 96/425 (22%), Positives = 188/425 (44%), Gaps = 83/425 (19%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP-- 73
           F Q        + GR+ +A K+F +MS K+ VT ++++ AYA+ G + +  ++  +M   
Sbjct: 152 FVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESS 211

Query: 74  --QRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKA 127
             + N+VSWN +++G+  +   KEA  +F K+    F PD  + + ++        L   
Sbjct: 212 GIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMG 271

Query: 128 RELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
           R +   +  +   +D    +AM+  Y K G+      L +          N+ ++G ++N
Sbjct: 272 RLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRN 331

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYA 244
           G +  A + FE  +E+ +                           E NVVSW ++++G A
Sbjct: 332 GLVDKALEMFELFKEQTM---------------------------ELNVVSWTSIIAGCA 364

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDG 304
           +NG+ +EA  LF +M +  V                           + N V+  +M+  
Sbjct: 365 QNGKDIEALELFREMQVAGV---------------------------KPNHVTIPSMLPA 397

Query: 305 YVRIAKLDEAR---------RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
              IA L   R          LLD     N+   +A+I  Y +  R++ +  +F+ + T 
Sbjct: 398 CGNIAALGHGRSTHGFAVRVHLLD-----NVHVGSALIDMYAKCGRINLSQIVFNMMPTK 452

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLF----RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIF 411
           ++VCWN ++ G++  G+  E +++F    R  +  D +++ ++++   Q+   D+  K F
Sbjct: 453 NLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYF 512

Query: 412 EEMGK 416
           + M +
Sbjct: 513 KMMSE 517



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 149/309 (48%), Gaps = 26/309 (8%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFE----QMPQRNL 77
           I   GKSG V   I +F+Q         N+ I+  ++NG V+ A ++FE    Q  + N+
Sbjct: 294 IDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNV 353

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDL 133
           VSW S+IAG   N K  EA ELF +M     +P+  +   M+        L   R     
Sbjct: 354 VSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGF 413

Query: 134 ---LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
              +   ++    +A++  YAK G  N ++ + + MP+KN+V WNS+++G++ +G+    
Sbjct: 414 AVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEV 473

Query: 191 SKFFEA-MEER---DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLS 241
              FE+ M  R   D +S+  +L    ++   D  WK+F+ + E+  +      +  M++
Sbjct: 474 MSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVN 533

Query: 242 GYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE----EAARLFIEMPERNPV 296
              R G++ EA  L  +MP   +   W A++ +   +  ++     A +LF   PE NP 
Sbjct: 534 LLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPE-NPG 592

Query: 297 SWTTMIDGY 305
           ++  + + Y
Sbjct: 593 TYVLLSNIY 601



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 1/146 (0%)

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
           Q H   +KSG  ND ++   LI  Y+      +A+L+ +      + S++SLI       
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHY 595
             T++I +F  M   G+ PD      +   C+ +     G K   C++ V  ++      
Sbjct: 96  LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVG-KQIHCVSCVSGLDMDAFVQ 154

Query: 596 ACMIDLLSRAGRLDEAFEMVKGMKIK 621
             M  +  R GR+ +A ++   M  K
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMSDK 180


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  367 bits (941), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 234/753 (31%), Positives = 381/753 (50%), Gaps = 72/753 (9%)

Query: 49  YNSMISAYAKNGRVNDARKLFEQMPQRNLVS---WNSMIAGYLHNDKVKEARELFDKMFR 105
           +  ++  Y    R  DA  +F  +P+    S   WN +I G+    +   A   + KM+ 
Sbjct: 73  HTRLLGMYVLARRFRDAVAVFSALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWS 132

Query: 106 ------PDLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNY 156
                 PD  +   ++      G +   R +      +    D    +A+V  YA  G  
Sbjct: 133 HPAAPSPDAHTLPYVVKSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLL 192

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGY 212
             A+   D +P ++ V WN M+ G  K G++  A + F  M     E +  +    L   
Sbjct: 193 GNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVC 252

Query: 213 VELDDLDSAWKFFQKI------PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA 266
               DL S  +           PE  V +  T+L+ YA+   + +A RLF+ MP  ++V 
Sbjct: 253 ATDADLLSGAQLHSLAVKCGLEPEVAVAN--TLLAMYAKCQCLDDAWRLFELMPQDDLVT 310

Query: 267 WNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARR----LL 318
           WN MI+  VQ G   EA  LF +M       + ++  +++     +  L + +     ++
Sbjct: 311 WNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIV 370

Query: 319 DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
                 ++   +A++  Y + + +  A  ++D     DVV  + MI GY   G  +EA+ 
Sbjct: 371 RNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQ 430

Query: 379 LFR----QMVNKDIVTWNTMIAG-----------------------------------YA 399
           +FR    Q +  + VT  +++ G                                   YA
Sbjct: 431 MFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYA 490

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
           +  ++D +  IF +M ++ + V+WN++IS F QN    +AL +F  M  EG K ++ T++
Sbjct: 491 KCGRLDLSHYIFLKMSQK-DEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITIS 549

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
            ALSACA L A+  G++IH + IK     D+F  ++LI MYAKCG ++ A  +F+     
Sbjct: 550 AALSACASLPAIYYGKEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPDK 609

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
           + +SWNS+I+ Y  +G   E++ L   M  EG  PD VTF+ ++SAC+H GLV+ G++LF
Sbjct: 610 NEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQLF 669

Query: 580 ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
           +CMT+ Y I P +EH+ACM+DL SR+G+LD+A + +  M  KP+AGIWG LL ACR+H+N
Sbjct: 670 QCMTKKYLIAPRMEHFACMVDLYSRSGKLDKAIQFIADMPFKPDAGIWGALLHACRVHRN 729

Query: 640 IKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
           ++L  IA ++L +L+P  +  Y L+SN++A AGRWD V KVR  M+ +   K PG SW++
Sbjct: 730 VELADIASQELFKLDPANSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWVD 789

Query: 700 VKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           V N  H F++ D     + +I  +LKTL  ++R
Sbjct: 790 VNNSSHLFVASDKSHPESEDIYTSLKTLLQELR 822



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 103/443 (23%), Positives = 204/443 (46%), Gaps = 36/443 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR--- 75
           N  +    K   +++A ++F  M Q + VT+N MIS   +NG   +A  LF  M QR   
Sbjct: 281 NTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDM-QRSGA 339

Query: 76  --NLVSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKARE 129
             + ++  S++      + +K+ +E+   + R     D+F  + ++  Y +  ++  A+ 
Sbjct: 340 RPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQN 399

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEA----KKLLDAMPSKNIVSWNSMLSGYTKNG 185
           L+D      D    + M++GY   G   EA    + LL+     N V+  S+L G     
Sbjct: 400 LYD-AARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMA 458

Query: 186 EMHLASKF----FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
            + L  +          ER     + ++D Y +   LD +   F K+ +++ V+W +M+S
Sbjct: 459 ALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMIS 518

Query: 242 GYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQI---EEAARLFIEMPERN 294
            +++NG+  EA  LF QM +  +    +  +A ++A      I   +E   + I+ P + 
Sbjct: 519 SFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKGPIKA 578

Query: 295 PV-SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
            + + + +ID Y +   L+ A R+ + MP KN  +  ++IS Y  +  + E+  +   + 
Sbjct: 579 DIFAESALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQ 638

Query: 354 TH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT-----WNTMIAGYAQIRQM 404
                 D V +  +I   A  G ++E + LF+ M  K ++      +  M+  Y++  ++
Sbjct: 639 EEGYKPDHVTFLALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSGKL 698

Query: 405 DDAVKIFEEMGKRRNTVSWNALI 427
           D A++   +M  + +   W AL+
Sbjct: 699 DKAIQFIADMPFKPDAGIWGALL 721



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 9/142 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F ++  I    K G +E A+++F  M  KN V++NS+ISAY  +G V ++  L   M +
Sbjct: 580 IFAESALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQE 639

Query: 75  RNL----VSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELE 125
                  V++ ++I+   H   V+E  +LF  M +     P +  +A M+  Y+R G+L+
Sbjct: 640 EGYKPDHVTFLALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSGKLD 699

Query: 126 KARELFDLLPNKEDTACWNAMV 147
           KA +    +P K D   W A++
Sbjct: 700 KAIQFIADMPFKPDAGIWGALL 721


>gi|357139571|ref|XP_003571354.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Brachypodium distachyon]
          Length = 673

 Score =  367 bits (941), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 213/626 (34%), Positives = 331/626 (52%), Gaps = 43/626 (6%)

Query: 114 MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS 173
           ++T Y R+G L  A++LFD +P + D   W A++  YA  G+   A+ + D MP +N  S
Sbjct: 48  LLTSYGRRGMLRDAQQLFDRMP-RRDVISWTALLTAYADNGDPASARLVFDDMPRRNAAS 106

Query: 174 WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ-- 231
           WN++LS Y + G+   A   F  M  R+ VS+  M+ G      L  A   F ++P +  
Sbjct: 107 WNALLSLYLRAGQPAAAHALFSKMPARNAVSYGAMISGLARAGMLREAEAVFAEMPWRWR 166

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
           + V    +++ Y R G +  A R+F+ M +R+V++W A++    + G + EA ++F  MP
Sbjct: 167 DPVGSNALIAAYVRAGELSLALRVFEGMAVRDVISWTAVVDGLCKNGSVLEARKVFEAMP 226

Query: 292 ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT--------------------- 330
           ERN VSWT+MI GYV++ +  +   L   M  + +   T                     
Sbjct: 227 ERNVVSWTSMILGYVKLGRRRDGLLLFQNMRREGVQVNTTTLSVALDACAESSLVREGIQ 286

Query: 331 ------------------AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGR 372
                             ++I+ Y +   M +A ++F  +   DVV WN +I GY Q   
Sbjct: 287 IHGLIIAMGFEMDVFLGDSLITLYSRFGWMVDARRVFAYMTWKDVVSWNSLITGYVQHNM 346

Query: 373 MDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
           ++EA  LF+ M  KD V+W +M+ G+A    + +A+++FE+M   ++ V+W A+IS  + 
Sbjct: 347 VEEAHVLFKLMPEKDAVSWTSMVVGFANRGWITEAIELFEQM-PGKDEVAWTAVISSLVT 405

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
           N  +L A++ F  M QEG K +    +C LSA A L  L  G Q H  AI  G++ D  +
Sbjct: 406 NGDYLSAVRWFCRMAQEGCKPNTIAFSCLLSALASLTMLNQGMQAHAYAINMGWIFDSSI 465

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
             SL++MYAKCGR+  A  +F       +I+ NS+I  +  +    +A KLF +M  +G 
Sbjct: 466 HTSLVSMYAKCGRLAEAYHVFSSISNPSLIATNSMITAFVQHDLVEDAFKLFTKMQNDGH 525

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
            P+ VTF+G+L+ C+  GLV  G   F  M  VY IEP  +HY CM+DLL RAG L EA 
Sbjct: 526 KPNHVTFLGILTGCARAGLVQQGYNYFGSMKSVYGIEPNPDHYTCMVDLLGRAGLLAEAL 585

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672
           EM+  M    N+  W  LL A  +H ++   +IA +KL E++P   + Y +LSNM + AG
Sbjct: 586 EMINSMPQNDNSDAWAALLSASSLHSSLTFAKIAAQKLLEMDPYDATAYTVLSNMFSSAG 645

Query: 673 RWDEVEKVRVSMEGSGAQKQPGCSWI 698
             ++ E ++V    + A K PG S I
Sbjct: 646 MKNDEEMLKVVQLSNMASKSPGYSLI 671



 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 147/504 (29%), Positives = 256/504 (50%), Gaps = 49/504 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +T  G+ G + +A ++F +M +++ +++ ++++AYA NG    AR +F+ MP+RN  
Sbjct: 46  NALLTSYGRRGMLRDAQQLFDRMPRRDVISWTALLTAYADNGDPASARLVFDDMPRRNAA 105

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK- 137
           SWN++++ YL   +   A  LF KM   +  S+  MI+   R G L +A  +F  +P + 
Sbjct: 106 SWNALLSLYLRAGQPAAAHALFSKMPARNAVSYGAMISGLARAGMLREAEAVFAEMPWRW 165

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            D    NA++A Y + G  + A ++ + M  ++++SW +++ G  KNG +  A K FEAM
Sbjct: 166 RDPVGSNALIAAYVRAGELSLALRVFEGMAVRDVISWTAVVDGLCKNGSVLEARKVFEAM 225

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG--------------- 242
            ER+VVSW  M+ GYV+L         FQ +  + V    T LS                
Sbjct: 226 PERNVVSWTSMILGYVKLGRRRDGLLLFQNMRREGVQVNTTTLSVALDACAESSLVREGI 285

Query: 243 ------------------------YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
                                   Y+R G M++ARR+F  M  ++VV+WN++I  YVQ  
Sbjct: 286 QIHGLIIAMGFEMDVFLGDSLITLYSRFGWMVDARRVFAYMTWKDVVSWNSLITGYVQHN 345

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
            +EEA  LF  MPE++ VSWT+M+ G+     + EA  L +QMP K+  A TA+IS  V 
Sbjct: 346 MVEEAHVLFKLMPEKDAVSWTSMVVGFANRGWITEAIELFEQMPGKDEVAWTAVISSLVT 405

Query: 339 NKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVT 390
           N     A + F ++       + + ++ ++   A    +++ +      +N     D   
Sbjct: 406 NGDYLSAVRWFCRMAQEGCKPNTIAFSCLLSALASLTMLNQGMQAHAYAINMGWIFDSSI 465

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
             ++++ YA+  ++ +A  +F  +    + ++ N++I+ F+Q++   DA K+F  M  +G
Sbjct: 466 HTSLVSMYAKCGRLAEAYHVFSSISN-PSLIATNSMITAFVQHDLVEDAFKLFTKMQNDG 524

Query: 451 KKADHSTLACALSACAHLAALQLG 474
            K +H T    L+ CA    +Q G
Sbjct: 525 HKPNHVTFLGILTGCARAGLVQQG 548



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 152/322 (47%), Gaps = 43/322 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  +  IT   + G + +A ++F+ M+ K+ V++NS+I+ Y ++  V +A  LF+ MP+
Sbjct: 300 VFLGDSLITLYSRFGWMVDARRVFAYMTWKDVVSWNSLITGYVQHNMVEEAHVLFKLMPE 359

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           ++ VSW SM+ G+ +   + EA ELF++M   D  +W  +I+     G+   A   F  +
Sbjct: 360 KDAVSWTSMVVGFANRGWITEAIELFEQMPGKDEVAWTAVISSLVTNGDYLSAVRWFCRM 419

Query: 135 PN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSW-------NSMLSGYTKN 184
                K +T  ++ +++  A +   N+    + A      + W        S++S Y K 
Sbjct: 420 AQEGCKPNTIAFSCLLSALASLTMLNQG---MQAHAYAINMGWIFDSSIHTSLVSMYAKC 476

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTML 240
           G +  A   F ++    +++ N M+  +V+ D ++ A+K F K+     + N V+++ +L
Sbjct: 477 GRLAEAYHVFSSISNPSLIATNSMITAFVQHDLVEDAFKLFTKMQNDGHKPNHVTFLGIL 536

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTT 300
           +G AR G + +    F  M  ++V                           E NP  +T 
Sbjct: 537 TGCARAGLVQQGYNYFGSM--KSVYG------------------------IEPNPDHYTC 570

Query: 301 MIDGYVRIAKLDEARRLLDQMP 322
           M+D   R   L EA  +++ MP
Sbjct: 571 MVDLLGRAGLLAEALEMINSMP 592


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 201/612 (32%), Positives = 339/612 (55%), Gaps = 23/612 (3%)

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW 205
           ++A Y+    +N+A  +L ++P   I S++S++   TK      +   F  M    ++  
Sbjct: 56  LIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPD 115

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV--------TMLSGYARNGRMLEARRLFD 257
           + +L    ++    SA+K  ++I   + VS +        +M   Y R GRM +AR++FD
Sbjct: 116 SHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFD 175

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDE 313
           +M  ++VV  +A++ AY ++G +EE  R+  EM     E N VSW  ++ G+ R     E
Sbjct: 176 RMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKE 235

Query: 314 ARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH--------DVVCWNVMIK 365
           A  +  ++ +         +S  + +    E   +   I  +        D    + MI 
Sbjct: 236 AVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMID 295

Query: 366 GYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFE---EMGKRRNTVS 422
            Y + G +   I+LF Q    +    N  I G ++   +D A+++FE   E     N VS
Sbjct: 296 MYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVS 355

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482
           W ++I+G  QN   ++AL++F  M   G K +H T+   L AC ++AAL  GR  H  A+
Sbjct: 356 WTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAV 415

Query: 483 KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIK 542
           +   ++++ VG++LI MYAKCGRI  ++++F      +++ WNSL+ G++++G A E + 
Sbjct: 416 RVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMS 475

Query: 543 LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLL 602
           +FE ++   + PD ++F  +LSAC  VGL D G K F+ M+E Y I+P +EHY+CM++LL
Sbjct: 476 IFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLL 535

Query: 603 SRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYA 662
            RAG+L EA++++K M  +P++ +WG LL +CR+  N+ L  IA EKL  LEP+    Y 
Sbjct: 536 GRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYV 595

Query: 663 LLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICN 722
           LLSN++A  G W EV+ +R  ME  G +K PGCSWI+VKN+++T L+GD    +  +I  
Sbjct: 596 LLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITE 655

Query: 723 TLKTLAAQIRNT 734
            +  ++ ++R +
Sbjct: 656 KMDEISKEMRKS 667



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/425 (22%), Positives = 188/425 (44%), Gaps = 83/425 (19%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP-- 73
           F Q        + GR+ +A K+F +MS K+ VT ++++ AYA+ G + +  ++  +M   
Sbjct: 152 FVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESS 211

Query: 74  --QRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKA 127
             + N+VSWN +++G+  +   KEA  +F K+    F PD  + + ++        L   
Sbjct: 212 GIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMG 271

Query: 128 RELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
           R +   +  +   +D    +AM+  Y K G+      L +          N+ ++G ++N
Sbjct: 272 RLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRN 331

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYA 244
           G +  A + FE  +E+ +                           E NVVSW ++++G A
Sbjct: 332 GLVDKALEMFELFKEQTM---------------------------ELNVVSWTSIIAGCA 364

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDG 304
           +NG+ +EA  LF +M +  V                           + N V+  +M+  
Sbjct: 365 QNGKDIEALELFREMQVAGV---------------------------KPNHVTIPSMLPA 397

Query: 305 YVRIAKLDEAR---------RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
              IA L   R          LLD     N+   +A+I  Y +  R++ +  +F+ + T 
Sbjct: 398 CGNIAALGHGRSTHGFAVRVHLLD-----NVHVGSALIDMYAKCGRINLSQIVFNMMPTK 452

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLF----RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIF 411
           ++VCWN ++ G++  G+  E +++F    R  +  D +++ ++++   Q+   D+  K F
Sbjct: 453 NLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYF 512

Query: 412 EEMGK 416
           + M +
Sbjct: 513 KMMSE 517



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 154/325 (47%), Gaps = 26/325 (8%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFE----QMPQRNL 77
           I   GKSG V   I +F+Q         N+ I+  ++NG V+ A ++FE    Q  + N+
Sbjct: 294 IDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNV 353

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDL 133
           VSW S+IAG   N K  EA ELF +M     +P+  +   M+        L   R     
Sbjct: 354 VSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGF 413

Query: 134 ---LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
              +   ++    +A++  YAK G  N ++ + + MP+KN+V WNS+++G++ +G+    
Sbjct: 414 AVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEV 473

Query: 191 SKFFEA-MEER---DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLS 241
              FE+ M  R   D +S+  +L    ++   D  WK+F+ + E+  +      +  M++
Sbjct: 474 MSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVN 533

Query: 242 GYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE----EAARLFIEMPERNPV 296
              R G++ EA  L  +MP   +   W A++ +   +  ++     A +LF   PE NP 
Sbjct: 534 LLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPE-NPG 592

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQM 321
           ++  + + Y       E   + ++M
Sbjct: 593 TYVLLSNIYAAKGMWTEVDSIRNKM 617



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 1/146 (0%)

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
           Q H   +KSG  ND ++   LI  Y+      +A+L+ +      + S++SLI       
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHY 595
             T++I +F  M   G+ PD      +   C+ +     G K   C++ V  ++      
Sbjct: 96  LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVG-KQIHCVSCVSGLDMDAFVQ 154

Query: 596 ACMIDLLSRAGRLDEAFEMVKGMKIK 621
             M  +  R GR+ +A ++   M  K
Sbjct: 155 GSMFHMYMRCGRMGDARKVFDRMSDK 180


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 199/601 (33%), Positives = 323/601 (53%), Gaps = 80/601 (13%)

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
           N ++  Y +L +L  A   F  IP+ N+ SW T+LS Y++ G + + +++F+ MP R+ V
Sbjct: 44  NNLITAYYKLGNLAYAHHVFDHIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGV 103

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPER-----NPVSWTTM------------------- 301
           +WN  I+ Y   G   +A R++  M +      N ++++TM                   
Sbjct: 104 SWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQ 163

Query: 302 ----------------IDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
                           +D Y ++  + +A+R  D+MP +N+     MI+G ++   ++E+
Sbjct: 164 ILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEES 223

Query: 346 NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV--------------------- 384
            ++F  +   D + W +MI G  Q G   EA+++FR+M                      
Sbjct: 224 QRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSL 283

Query: 385 -----------------NKD-IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNAL 426
                            +KD +   + ++  Y++ R +  A  +F+ M  ++N +SW A+
Sbjct: 284 LALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRM-PQKNVISWTAM 342

Query: 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
           + G+ QN F  +A+KIF  M + G + D  TL   +S+CA+LA+L+ G Q H  A+ SG 
Sbjct: 343 LVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGL 402

Query: 487 VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEE 546
           ++ + V N+LIT+Y KCG  +N+  LF + +  D +SW +L+AGYA  G A E I LFE 
Sbjct: 403 ISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFER 462

Query: 547 MVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAG 606
           M+  G+ PD VTFIGVLSACS  GLV+ GL+ FE M + + I P+V+H  C+IDLL RAG
Sbjct: 463 MLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAG 522

Query: 607 RLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSN 666
           RL+EA   +  M   P+   W TLL +CR+H ++++G+ A + L  LEPQ  + Y LLS+
Sbjct: 523 RLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSS 582

Query: 667 MHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKT 726
           ++A  G+WD+V ++R  M     +K+PG SWI+ K ++H F + D       +I   L+ 
Sbjct: 583 LYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHVFSADDQSSPFLGQIYAELEK 642

Query: 727 L 727
           L
Sbjct: 643 L 643



 Score =  156 bits (395), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 115/472 (24%), Positives = 219/472 (46%), Gaps = 63/472 (13%)

Query: 5   LKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND 64
           LK+I  K    F  N  IT   K G +  A  +F  + Q N  ++N+++S Y+K G ++ 
Sbjct: 32  LKTI--KQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPNLFSWNTILSVYSKLGLLSQ 89

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP-----DLFSWALMITCYT 119
            +++F  MP R+ VSWN  I+GY +     +A  ++  M +      +  +++ M+   +
Sbjct: 90  MQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCS 149

Query: 120 RKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNS 176
           +   ++  R++   +       D    + +V  Y K+G   +AK+  D MP +N+V  N+
Sbjct: 150 KFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNT 209

Query: 177 MLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI-------- 228
           M++G  + G +  + + F  ++ERD +SW +M+ G ++      A   F+++        
Sbjct: 210 MITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMD 269

Query: 229 -------------------------------PEQNVVSWVTMLSGYARNGRMLEARRLFD 257
                                           + NV     ++  Y++   +  A  +F 
Sbjct: 270 QFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFK 329

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-----SWTTMIDGYVRIAKLD 312
           +MP +NV++W AM+  Y Q G  EEA ++F EM +RN V     +  ++I     +A L+
Sbjct: 330 RMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEM-QRNGVEPDDFTLGSVISSCANLASLE 388

Query: 313 EAR----RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
           E      R L       I    A+I+ Y +    + ++++F ++   D V W  ++ GYA
Sbjct: 389 EGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYA 448

Query: 369 QCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
           Q G+ +E I LF +M    +  D VT+  +++  ++   ++  ++ FE M K
Sbjct: 449 QFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIK 500



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/401 (25%), Positives = 188/401 (46%), Gaps = 38/401 (9%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS VF  +  +    K G + +A + F +M ++N V  N+MI+   + G + ++++LF  
Sbjct: 170 GSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCG 229

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKA 127
           + +R+ +SW  MI G + N   +EA ++F +M    F  D F++  ++T       L + 
Sbjct: 230 LKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEG 289

Query: 128 RELFDLL---PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
           +++   +    +K++    +A+V  Y+K  +   A+ +   MP KN++SW +ML GY +N
Sbjct: 290 KQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQN 349

Query: 185 GEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT-- 238
           G    A K F  M+    E D  +   ++     L  L+   +F  +     ++S++T  
Sbjct: 350 GFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVS 409

Query: 239 --MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
             +++ Y + G    + RLF +M IR+ V+W A++A Y Q G+  E   LF  M     +
Sbjct: 410 NALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERM-----L 464

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHD 356
           +     DG   I  L    R    +  K +    +MI  +     +D    I D +G   
Sbjct: 465 AHGLKPDGVTFIGVLSACSR--AGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLG--- 519

Query: 357 VVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIA 396
                       + GR++EA N    M  + D+V W T+++
Sbjct: 520 ------------RAGRLEEARNFINNMPCHPDVVGWATLLS 548



 Score = 48.1 bits (113), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 63/301 (20%), Positives = 118/301 (39%), Gaps = 79/301 (26%)

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
           A  L  C         +++H L +K+    + F+ N+LIT Y K G +  A  +F     
Sbjct: 9   ASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQ 68

Query: 519 VDVISWNSL-------------------------------IAGYAINGNATEAIKLFEEM 547
            ++ SWN++                               I+GYA  G+ ++A+++++ M
Sbjct: 69  PNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLM 128

Query: 548 VMEGVAP-DPVTFIGVLSACSHVGLVDGGLKL------FECMTEVYAIEPLVEHYA---- 596
           + +     + +TF  +L  CS    VD G ++      F   ++V+   PLV+ Y     
Sbjct: 129 LKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGL 188

Query: 597 --------------------CMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLG---- 632
                                MI  L R G ++E+  +  G+K + +   W  ++     
Sbjct: 189 IYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSIS-WTIMITGLMQ 247

Query: 633 ------ACRMHQNIKLGRIAVEKLSELEPQKTSCYALLS-----NMHAEAGRWDEVEKVR 681
                 A  M + ++L   A+++ +      T+C +LL+      +HA   R D  + V 
Sbjct: 248 NGLEREALDMFREMRLAGFAMDQFT-FGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVF 306

Query: 682 V 682
           V
Sbjct: 307 V 307


>gi|357130409|ref|XP_003566841.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 815

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 229/768 (29%), Positives = 385/768 (50%), Gaps = 132/768 (17%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
             +T   +S+++ Y K GR+ DAR++F+ MP R++V+W +MI+ +       +A ++F +
Sbjct: 82  HPDTFLLDSLLNMYCKCGRLVDARRVFDGMPHRDIVAWTAMISAHTAAGDSDQALDMFAR 141

Query: 103 M----FRPDLFSWA-----------------------------------LMITCYTRKGE 123
           M      P+ F+ A                                    ++  YT  GE
Sbjct: 142 MNQEGIAPNGFTLASVLKACSGGSHSKFTHQVHGQVVKLNGLDDPYVGSSLVEAYTSCGE 201

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM-PSKNIVSWNSMLS--- 179
           L+ A  +   LP + D + WNA++ GYA+ G+Y     +++ +  S + +S  ++ +   
Sbjct: 202 LDAAETVLLGLPERSDVS-WNALLNGYARHGDYRRVMIIIEKLVASGDEISKYTLPTVLK 260

Query: 180 -----GYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
                G  K G+   AS     +E  +V++ + +++ Y      + A++ F +I E +VV
Sbjct: 261 CCMELGLAKYGQSVHASVIKRGLETDNVLN-SCLVEMYSRCLSAEEAYEVFIRIDEPDVV 319

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMP--------------------------IRNVVAW- 267
               M+S + R+    EA  LF +M                            R+V A+ 
Sbjct: 320 HCSAMISCFDRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASRTGDANLCRSVHAYI 379

Query: 268 ------------NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR 315
                       +A++  YV+ G +++A   F  + E +  SW T++  +   +  ++  
Sbjct: 380 VKSGFAMLKGVGDAILNMYVKVGAVQDATVTFDLIHEPDTFSWNTILSAFYSGSNCEQGL 439

Query: 316 RLLDQMPYKNIAAQTAMISGYVQ------NKRM-DEANQIFDKIG-THDVVCWNVMIKGY 367
           R+  QM  +  +A        ++      N R   + +    K G  +D     +++  Y
Sbjct: 440 RIFKQMACEGFSANKYTYVSVLRCCTSLMNLRFGTQVHACILKSGLQNDTDVSRMLVDMY 499

Query: 368 AQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
           AQ G    A  +F Q+  +D  +W  +++GYA+  + +  V+ F                
Sbjct: 500 AQSGCFTSACLVFEQLKERDAFSWTVIMSGYAKTEEAEKVVEYFRS-------------- 545

Query: 428 SGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV 487
                             M +E  +   +TLA +LS C+ +A+L  G Q+H  AIKSG+ 
Sbjct: 546 ------------------MLRENIRPSDATLAVSLSVCSDMASLGSGLQLHSWAIKSGW- 586

Query: 488 NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
           N   V  +L+ MY KCG I +AE+LF +++  D ++WN++I GY+ +G+  +A+  F++M
Sbjct: 587 NSSVVSGALVDMYVKCGNIADAEMLFHESETRDQVAWNTIICGYSQHGHGYKALDAFKQM 646

Query: 548 VMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGR 607
           V EG  PD +TF+GVLSACSH GL++ G K F+ ++ +Y I P +EHYACM+D+LS+AGR
Sbjct: 647 VDEGKRPDGITFVGVLSACSHAGLLNEGRKYFKSLSSIYGITPTMEHYACMVDILSKAGR 706

Query: 608 LDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNM 667
           L EA  ++  M + P++ IW T+LGACR+H+NI++   A E+L ELEP   S   LLSN+
Sbjct: 707 LVEAESLINQMPLAPDSSIWRTILGACRIHRNIEIAERAAERLFELEPHDASSSILLSNI 766

Query: 668 HAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD--PK 713
           +A+ GRW +V +VR  +   G +K+PGCSWIE+  QIH FLS D  PK
Sbjct: 767 YADLGRWSDVTRVRNILLDHGVKKEPGCSWIEINGQIHMFLSQDGCPK 814



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 130/287 (45%), Gaps = 34/287 (11%)

Query: 379 LFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
           L R  ++ D    ++++  Y +  ++ DA ++F+ M   R+ V+W A+IS          
Sbjct: 76  LLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGM-PHRDIVAWTAMISAHTAAGDSDQ 134

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
           AL +F  M QEG   +  TLA  L AC+  +  +   Q+H   +K   ++D +VG+SL+ 
Sbjct: 135 ALDMFARMNQEGIAPNGFTLASVLKACSGGSHSKFTHQVHGQVVKLNGLDDPYVGSSLVE 194

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
            Y  CG +  AE +         +SWN+L+ GYA +G+    + + E++V  G      T
Sbjct: 195 AYTSCGELDAAETVLLGLPERSDVSWNALLNGYARHGDYRRVMIIIEKLVASGDEISKYT 254

Query: 559 FIGVLSACSHVGL-----------VDGGLK----LFECMTEVYA---------------I 588
              VL  C  +GL           +  GL+    L  C+ E+Y+                
Sbjct: 255 LPTVLKCCMELGLAKYGQSVHASVIKRGLETDNVLNSCLVEMYSRCLSAEEAYEVFIRID 314

Query: 589 EPLVEHYACMIDLLSRAGRLDEAFEM---VKGMKIKPNAGIWGTLLG 632
           EP V H + MI    R     EA ++   + GM +KPN  I+  + G
Sbjct: 315 EPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAG 361



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 129/294 (43%), Gaps = 40/294 (13%)

Query: 316 RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
           RLL    + +     ++++ Y +  R+ +A ++FD +   D+V W  MI  +   G  D+
Sbjct: 75  RLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPHRDIVAWTAMISAHTAAGDSDQ 134

Query: 376 AINLFRQM------------------------------VNKDIVTWN---------TMIA 396
           A+++F +M                              V+  +V  N         +++ 
Sbjct: 135 ALDMFARMNQEGIAPNGFTLASVLKACSGGSHSKFTHQVHGQVVKLNGLDDPYVGSSLVE 194

Query: 397 GYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHS 456
            Y    ++D A  +   + +R + VSWNAL++G+ ++  +   + I   +   G +    
Sbjct: 195 AYTSCGELDAAETVLLGLPERSD-VSWNALLNGYARHGDYRRVMIIIEKLVASGDEISKY 253

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
           TL   L  C  L   + G+ +H   IK G   D  + + L+ MY++C   + A  +F   
Sbjct: 254 TLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNVLNSCLVEMYSRCLSAEEAYEVFIRI 313

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
           D  DV+  +++I+ +  +  A EA+ LF +M   GV P+   F+G+    S  G
Sbjct: 314 DEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASRTG 367



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 96/198 (48%), Gaps = 14/198 (7%)

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
           A AL  CA    L+ G+++H   ++S    D F+ +SL+ MY KCGR+ +A  +F     
Sbjct: 54  AAALQDCAVRRTLRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPH 113

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS------HVGLV 572
            D+++W ++I+ +   G++ +A+ +F  M  EG+AP+  T   VL ACS          V
Sbjct: 114 RDIVAWTAMISAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSGGSHSKFTHQV 173

Query: 573 DGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLG 632
            G +     + + Y    LVE Y       +  G LD A  ++ G+  + +   W  LL 
Sbjct: 174 HGQVVKLNGLDDPYVGSSLVEAY-------TSCGELDAAETVLLGLPERSDVS-WNALLN 225

Query: 633 ACRMHQNIKLGRIAVEKL 650
               H + +   I +EKL
Sbjct: 226 GYARHGDYRRVMIIIEKL 243



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 120/292 (41%), Gaps = 51/292 (17%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           +    +SG    A  +F Q+ +++  ++  ++S YAK        + F  M + N+   +
Sbjct: 496 VDMYAQSGCFTSACLVFEQLKERDAFSWTVIMSGYAKTEEAEKVVEYFRSMLRENIRPSD 555

Query: 82  SMIAGYLH--NDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKED 139
           + +A  L   +D       L        L SWA+      + G                 
Sbjct: 556 ATLAVSLSVCSDMASLGSGL-------QLHSWAI------KSG----------------- 585

Query: 140 TACWN------AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
              WN      A+V  Y K GN  +A+ L     +++ V+WN+++ GY+++G  + A   
Sbjct: 586 ---WNSSVVSGALVDMYVKCGNIADAEMLFHESETRDQVAWNTIICGYSQHGHGYKALDA 642

Query: 194 FEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYA 244
           F+ M +     D +++  +L        L+   K+F+ +     ++     +  M+   +
Sbjct: 643 FKQMVDEGKRPDGITFVGVLSACSHAGLLNEGRKYFKSLSSIYGITPTMEHYACMVDILS 702

Query: 245 RNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
           + GR++EA  L +QMP+  +   W  ++ A      IE A R    + E  P
Sbjct: 703 KAGRLVEAESLINQMPLAPDSSIWRTILGACRIHRNIEIAERAAERLFELEP 754


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 207/684 (30%), Positives = 373/684 (54%), Gaps = 58/684 (8%)

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           F P+   +   +  + ++G+L  AR+LFD +P+K +    N M+ GY K GN + A+ L 
Sbjct: 38  FDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHK-NVISTNTMIMGYLKSGNLSTARSLF 96

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLD 219
           D+M  +++V+W  ++ GY ++     A   F  M       D ++   +L G+ E + ++
Sbjct: 97  DSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVN 156

Query: 220 SAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
              +    + +    S +    ++L  Y +   +  A  LF  M  ++ V +NA++  Y 
Sbjct: 157 EVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYS 216

Query: 276 QRGQIEEAARLFIEMPE----RNPVSWTTMIDGYVRIAKLD---EARRLLDQMPYK-NIA 327
           + G   +A  LF +M +     +  ++  ++   +++  ++   +    + +  +  N+ 
Sbjct: 217 KEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVF 276

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF------- 380
              A++  Y ++ R+ EA ++F ++   D + +NV+I   A  GR++E++ LF       
Sbjct: 277 VANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTR 336

Query: 381 ------------------------RQMVNKDIVT--------WNTMIAGYAQIRQMDDAV 408
                                   RQ+ ++ IVT         N+++  YA+  +  +A 
Sbjct: 337 FDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEAN 396

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
           +IF ++   +++V W ALISG++Q   H D LK+FV M +    AD +T A  L ACA+L
Sbjct: 397 RIFADLA-HQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANL 455

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
           A+L LG+Q+H   I+SG ++++F G++L+ MYAKCG I+ A  +F++    + +SWN+LI
Sbjct: 456 ASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALI 515

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI 588
           + YA NG+   A++ FE+M+  G+ P+ V+F+ +L ACSH GLV+ GL+ F  MT+VY +
Sbjct: 516 SAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKL 575

Query: 589 EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVE 648
           EP  EHYA M+D+L R+GR DEA +++  M  +P+  +W ++L +CR+H+N +L   A +
Sbjct: 576 EPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAAD 635

Query: 649 KLSELEPQKTSC-YALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTF 707
           +L  ++  + +  Y  +SN++A AG WD V KV+ ++   G +K P  SW+E+K + H F
Sbjct: 636 QLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYSWVEIKQKTHVF 695

Query: 708 LSGDPKQCRTAEICNTLKTLAAQI 731
            + D    +T EI   L  L  Q+
Sbjct: 696 SANDTSHPQTKEITRKLDELEKQM 719



 Score =  192 bits (489), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 151/600 (25%), Positives = 279/600 (46%), Gaps = 84/600 (14%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           + G +  A K+F +M  KN ++ N+MI  Y K+G ++ AR LF+ M QR++V+W  +I G
Sbjct: 54  QRGDLGAARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGG 113

Query: 87  YLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDL------LPN 136
           Y  +++  EA  LF  M R    PD  + A +++ +T   E E   E+  +      +  
Sbjct: 114 YAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFT---EFESVNEVAQVHGHVVKVGY 170

Query: 137 KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEA 196
                  N+++  Y K  +   A  L   M  K+ V++N++L+GY+K G  H A   F  
Sbjct: 171 DSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFK 230

Query: 197 MEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGR 248
           M++        ++  +L   +++DD++   +    + + N V  V     +L  Y+++ R
Sbjct: 231 MQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDR 290

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDG 304
           ++EAR+LF +MP  + +++N +I      G++EE+  LF E+     +R    + T++  
Sbjct: 291 IVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSI 350

Query: 305 YVRIAKLDEARRLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFDKIGTHDVVCW 360
                 L+  R++  Q    +  ++     +++  Y +  +  EAN+IF  +     V W
Sbjct: 351 AANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPW 410

Query: 361 NVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAG------------------- 397
             +I GY Q G  ++ + LF +M    +  D  T+ +++                     
Sbjct: 411 TALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIR 470

Query: 398 ----------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALK 441
                           YA+   + +A+++F+EM   RN+VSWNALIS + QN     AL+
Sbjct: 471 SGCLSNVFSGSALVDMYAKCGSIKEALQMFQEM-PVRNSVSWNALISAYAQNGDGGHALR 529

Query: 442 IFVLMTQEGKKADHSTLACALSACAHLAALQLG-------RQIHHLAIKSGYVNDLFVGN 494
            F  M   G + +  +    L AC+H   ++ G        Q++ L  +  +        
Sbjct: 530 SFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHY------A 583

Query: 495 SLITMYAKCGRIQNAE-LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV-MEGV 552
           S++ M  + GR   AE L+ +     D I W+S++    I+ N   AIK  +++  M+G+
Sbjct: 584 SMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLFNMKGL 643



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 144/587 (24%), Positives = 265/587 (45%), Gaps = 99/587 (16%)

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
           H+ +   +   + +   +N  +  +++  DL +A K F ++P +NV+S  TM+ GY ++G
Sbjct: 28  HVDASMIKTGFDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKSG 87

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMID 303
            +  AR LFD M  R+VV W  +I  Y Q  +  EA  LF +M       + ++  T++ 
Sbjct: 88  NLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLS 147

Query: 304 GYVRIAKLDEARRL---LDQMPYKN-IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
           G+     ++E  ++   + ++ Y + +    +++  Y + + +  A  +F  +   D V 
Sbjct: 148 GFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVT 207

Query: 360 WNVMIKGYAQCGRMDEAINLFRQM----------------------------------VN 385
           +N ++ GY++ G   +AINLF +M                                  V 
Sbjct: 208 FNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVV 267

Query: 386 KDIVTWNTMIAG-----YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
           K    WN  +A      Y++  ++ +A K+F EM +  + +S+N LI+    N    ++L
Sbjct: 268 KCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPE-VDGISYNVLITCCAWNGRVEESL 326

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500
           ++F  +            A  LS  A+   L++GRQIH  AI +  ++++ VGNSL+ MY
Sbjct: 327 ELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMY 386

Query: 501 AKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
           AKC +   A  +F D      + W +LI+GY   G   + +KLF EM    +  D  T+ 
Sbjct: 387 AKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYA 446

Query: 561 GVLSACSHVGLVDGGLKLFE------CMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEM 614
            +L AC+++  +  G +L        C++ V++   LV+ YA       + G + EA +M
Sbjct: 447 SILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYA-------KCGSIKEALQM 499

Query: 615 VKGMKIK----------------------------------PNAGIWGTLLGACRMHQNI 640
            + M ++                                  PN+  + ++L AC     +
Sbjct: 500 FQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLV 559

Query: 641 KLGRIAVEKLSE---LEPQKTSCYALLSNMHAEAGRWDEVEKVRVSM 684
           + G      +++   LEP++   YA + +M   +GR+DE EK+   M
Sbjct: 560 EEGLQYFNSMTQVYKLEPRREH-YASMVDMLCRSGRFDEAEKLMARM 605



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 97/418 (23%), Positives = 175/418 (41%), Gaps = 87/418 (20%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLF----- 69
           VF  N  +    K  R+ EA K+F +M + + ++YN +I+  A NGRV ++ +LF     
Sbjct: 275 VFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQF 334

Query: 70  -----EQMPQRNLVS-----------------------------WNSMIAGYLHNDKVKE 95
                 Q P   L+S                              NS++  Y   DK  E
Sbjct: 335 TRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGE 394

Query: 96  ARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAK 152
           A  +F  +       W  +I+ Y +KG  E   +LF  +   +   D+A + +++   A 
Sbjct: 395 ANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACAN 454

Query: 153 IGNYNEAKKL----LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLM 208
           + +    K+L    + +    N+ S ++++  Y K G +  A + F+ M  R+ VSWN +
Sbjct: 455 LASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNAL 514

Query: 209 LDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV 264
           +  Y +  D   A + F+++     + N VS++++L   +  G + E  + F        
Sbjct: 515 ISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYF-------- 566

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
              N+M   Y    ++E         P R    + +M+D   R  + DEA +L+ +MP++
Sbjct: 567 ---NSMTQVY----KLE---------PRRE--HYASMVDMLCRSGRFDEAEKLMARMPFE 608

Query: 325 NIAAQTAMISGYVQNKRMDE--------ANQIFDKIGTHDVVCWNVMIKGYAQCGRMD 374
                  M S  + + R+ +        A+Q+F+  G  D   +  M   YA  G  D
Sbjct: 609 ---PDEIMWSSILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWD 663



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 101/204 (49%), Gaps = 15/204 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S VF+ +  +    K G ++EA+++F +M  +N+V++N++ISAYA+NG    A + FEQM
Sbjct: 475 SNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQM 534

Query: 73  P----QRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGE 123
                Q N VS+ S++    H   V+E  + F+ M       P    +A M+    R G 
Sbjct: 535 IHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGR 594

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNE-----AKKLLDAMPSKNIVSWNSML 178
            ++A +L   +P + D   W++++    +I    E     A +L +    ++   + SM 
Sbjct: 595 FDEAEKLMARMPFEPDEIMWSSILNS-CRIHKNQELAIKAADQLFNMKGLRDAAPYVSMS 653

Query: 179 SGYTKNGEMHLASKFFEAMEERDV 202
           + Y   GE     K  +A+ ER +
Sbjct: 654 NIYAAAGEWDSVGKVKKALRERGI 677



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/303 (21%), Positives = 141/303 (46%), Gaps = 23/303 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V   N  +    K  +  EA +IF+ ++ +++V + ++IS Y + G   D  KLF +M
Sbjct: 374 SEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEM 433

Query: 73  PQRNL----VSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGEL 124
            +  +     ++ S++    +   +   ++L  ++ R     ++FS + ++  Y + G +
Sbjct: 434 HRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSI 493

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSMLSG 180
           ++A ++F  +P + ++  WNA+++ YA+ G+   A +  + M       N VS+ S+L  
Sbjct: 494 KEALQMFQEMPVR-NSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCA 552

Query: 181 YTKNGEMHLASKFFEAME-----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-EQNVV 234
            +  G +    ++F +M      E     +  M+D        D A K   ++P E + +
Sbjct: 553 CSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEI 612

Query: 235 SWVTMLSG--YARNGRML--EARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
            W ++L+     +N  +    A +LF+   +R+   + +M   Y   G+ +   ++   +
Sbjct: 613 MWSSILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKAL 672

Query: 291 PER 293
            ER
Sbjct: 673 RER 675


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  366 bits (939), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 231/751 (30%), Positives = 379/751 (50%), Gaps = 68/751 (9%)

Query: 49  YNSMISAYAKNGRVNDARKLFEQMPQR---NLVSWNSMIAGYLHNDKVKEARELFDKMF- 104
           +  ++  Y    R  DA  +F  +P+    + + WN +I G+        A   + KM+ 
Sbjct: 73  HTRLLGMYVLARRFRDAVAVFSALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWT 132

Query: 105 -----RPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNY 156
                 PD  +   ++      G +   R +           D    +A++  Y+  G  
Sbjct: 133 HPAAPSPDAHTLPYVVKSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLL 192

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGY 212
            +A+   D MP ++ V WN M+ GY K G++  A + F  M     E +  +    L   
Sbjct: 193 RDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVC 252

Query: 213 VELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN 268
               DL S  +          EQ V    T+LS YA+   + +A RLF+ +P  ++V WN
Sbjct: 253 AAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWN 312

Query: 269 AMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARR----LLDQ 320
            MI+  VQ G ++EA  LF +M       + V+  +++     +  L + +     ++  
Sbjct: 313 GMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRN 372

Query: 321 MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF 380
             + +    +A++  Y + + +  A  ++D     DVV  + +I GY   G  ++A+ +F
Sbjct: 373 CVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMF 432

Query: 381 R----QMVNKDIVTWNTMIAG-----------------------------------YAQI 401
           R    Q +  + VT  +++                                     YA+ 
Sbjct: 433 RYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKC 492

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
            ++D +  IF +M   ++ V+WN++IS F QN    +AL +F  M  EG K ++ T++ A
Sbjct: 493 GRLDLSHYIFSKM-SLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSA 551

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           LSACA L A+  G++IH + IK     D+F  ++LI MYAKCG ++ A  +F+     + 
Sbjct: 552 LSACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNE 611

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC 581
           +SWNS+I+ Y  +G   E++     M  EG  PD VTF+ ++SAC+H GLV+ GL+LF+C
Sbjct: 612 VSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQC 671

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIK 641
           MT+ Y I P +EH+ACM+DL SR+GRLD+A + +  M  KP+AGIWG LL ACR+H+N++
Sbjct: 672 MTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVE 731

Query: 642 LGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVK 701
           L  IA ++L +L+P  +  Y L+SN++A AGRWD V KVR  M+ +   K PG SW++V 
Sbjct: 732 LADIASQELFKLDPGNSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVN 791

Query: 702 NQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           N  H F++ D     + +I  +LK L  ++R
Sbjct: 792 NSSHLFVASDKSHPESEDIYTSLKALLQELR 822



 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 196/401 (48%), Gaps = 27/401 (6%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           ++     N+++S YAK   ++DA +LFE +P+ +LV+WN MI+G + N  + EA  LF  
Sbjct: 274 EQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCD 333

Query: 103 MF----RPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGN 155
           M     RPD  +   ++   T    L++ +E+   +       D    +A+V  Y K  +
Sbjct: 334 MLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRD 393

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
              A+ L DA  + ++V  ++++SGY  NG    A + F  + E+ +    + +   +  
Sbjct: 394 VRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPA 453

Query: 216 DDLDSAWKFFQKIP--------EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
               SA    Q+I         E        ++  YA+ GR+  +  +F +M +++ V W
Sbjct: 454 CASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTW 513

Query: 268 NAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKL---DEARRLLDQ 320
           N+MI+++ Q G+ +EA  LF +M     + N V+ ++ +     +  +    E   ++ +
Sbjct: 514 NSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIK 573

Query: 321 MPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
            P K +I A++A+I  Y +   M+ A ++F+ +   + V WN +I  Y   G + E+++ 
Sbjct: 574 GPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSF 633

Query: 380 FRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
             +M       D VT+  +I+  A    +++ +++F+ M K
Sbjct: 634 LHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTK 674



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 99/443 (22%), Positives = 203/443 (45%), Gaps = 36/443 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM----PQ 74
           N  ++   K   +++A ++F  + + + VT+N MIS   +NG +++A  LF  M     +
Sbjct: 281 NTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGAR 340

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKAREL 130
            + V+  S++      + +K+ +E+   + R     D F  + ++  Y +  ++  AR L
Sbjct: 341 PDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNL 400

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEA----KKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           +D      D    + +++GY   G   +A    + LL+     N V+  S+L        
Sbjct: 401 YD-AARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISA 459

Query: 187 MHLASKFF-----EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
           + L  +        A E +  V   LM D Y +   LD +   F K+  ++ V+W +M+S
Sbjct: 460 LPLGQEIHGYVLRNAYEGKCYVESALM-DMYAKCGRLDLSHYIFSKMSLKDEVTWNSMIS 518

Query: 242 GYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQI---EEAARLFIEMPERN 294
            +++NG   EA  LF QM +  +    V  ++ ++A      I   +E   + I+ P + 
Sbjct: 519 SFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKA 578

Query: 295 PV-SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
            + + + +ID Y +   ++ A R+ + MP KN  +  ++IS Y  +  + E+     ++ 
Sbjct: 579 DIFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQ 638

Query: 354 TH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT-----WNTMIAGYAQIRQM 404
                 D V +  +I   A  G ++E + LF+ M  + ++      +  M+  Y++  ++
Sbjct: 639 EEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRL 698

Query: 405 DDAVKIFEEMGKRRNTVSWNALI 427
           D A++   +M  + +   W AL+
Sbjct: 699 DKAIQFIADMPFKPDAGIWGALL 721



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 9/142 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F ++  I    K G +E A+++F  M  KN V++NS+ISAY  +G V ++     +M +
Sbjct: 580 IFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQE 639

Query: 75  RNL----VSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELE 125
                  V++ ++I+   H   V+E  +LF  M +     P +  +A M+  Y+R G L+
Sbjct: 640 EGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRLD 699

Query: 126 KARELFDLLPNKEDTACWNAMV 147
           KA +    +P K D   W A++
Sbjct: 700 KAIQFIADMPFKPDAGIWGALL 721


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  366 bits (939), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 226/753 (30%), Positives = 391/753 (51%), Gaps = 66/753 (8%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGY-LHNDKVKEARELFDK 102
           +NT+   ++++ Y K G + DA+ +FE+M ++N+V+WN+M+  Y L     K A ELF +
Sbjct: 91  QNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVYSLQGCCWKLAVELFTR 150

Query: 103 MF----RPDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGN 155
           M     + ++ ++  ++        L K + +   +   E   D     A+V  Y K G+
Sbjct: 151 MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 210

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYT---KNGEMHLASKFFEAMEER-DVVSWNLMLDG 211
             +A+K+ D MP +++ +WNSM+S Y+   ++GE     +  +   ER D V++  +LD 
Sbjct: 211 LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDA 270

Query: 212 YVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
            V  + L       + I E     ++     +++ YAR     +A ++F +M   N++ W
Sbjct: 271 CVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITW 330

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
           +A+I A+   G   EA R F  M +     N V++ ++++G+   + L+E  R+   +  
Sbjct: 331 SAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITE 390

Query: 324 KNIAAQT----AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
             +   T    A+++ Y + +  D+A  +FD++   +++ WN MI  Y QC R D+A+ L
Sbjct: 391 HGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQL 450

Query: 380 FRQM----VNKDIVTWNTMIAG-----------------------------------YAQ 400
           FR M    +  D V + T++                                     YA+
Sbjct: 451 FRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAK 510

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
             ++D A  I +EM +++ T +WN LI+G+  +    +AL+ +  +  E    D  T   
Sbjct: 511 AGELDVAEVILQEMDEQQIT-AWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFIS 569

Query: 461 ALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV- 519
            L+AC    +L  G+ IH  A++ G  +D+ V N+L  MY+KCG ++NA  +F D+ P+ 
Sbjct: 570 VLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIF-DSMPIR 628

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
             +SWN ++  YA +G + E +KL  +M  EGV  + +TF+ VLS+CSH GL+  G + F
Sbjct: 629 SAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYF 688

Query: 580 ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
             +     IE   EHY C++DLL RAG+L EA + +  M ++P    W +LLGACR+ ++
Sbjct: 689 HSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLLGACRVQKD 748

Query: 640 IKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
           +  G++A  KL EL+P  +S   +LSN+++E G W    K+R +M     +K PG S I+
Sbjct: 749 LDRGKLAAGKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQ 808

Query: 700 VKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           VKN++H F   D    R AEI + ++ L   +R
Sbjct: 809 VKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMR 841



 Score =  224 bits (572), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 173/653 (26%), Positives = 311/653 (47%), Gaps = 82/653 (12%)

Query: 56  YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSW 111
           Y++ G + DA   F ++  RN+VSWN MI+ Y      +EA  LF  M      P+  + 
Sbjct: 2   YSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITL 61

Query: 112 -ALMITCYT----RKGELEKA----RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKL 162
            A++ +C +    R G L  A    R  F      ++T    A++  Y K G   +A+ +
Sbjct: 62  VAVLNSCGSFRELRDGILVHALSLERGFF------QNTLVATALLNMYGKCGTLLDAQSV 115

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEM-HLASKFFEAM----EERDVVSWNLMLDGYVELDD 217
            + M  KN+V+WN+ML  Y+  G    LA + F  M     + +V+++  +L+  V+ D 
Sbjct: 116 FEEMAEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDA 175

Query: 218 LDSAWKFFQKIPEQ-----NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
           L    KF      +     +V     +++ Y + G + +AR++FD MP R+V  WN+MI+
Sbjct: 176 LRKG-KFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMIS 234

Query: 273 AYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYK---- 324
           AY    +  EA  +F  M +     + V++ +++D  V    L   + + + +       
Sbjct: 235 AYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFEL 294

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
           ++   TA+I+ Y + +  ++A Q+F ++   +++ W+ +I  +A  G   EA+  FR M 
Sbjct: 295 DLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQ 354

Query: 385 NKDI----VTWNTMIAG-----------------------------------YAQIRQMD 405
            + I    VT+ +++ G                                   Y +    D
Sbjct: 355 QEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPD 414

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
           DA  +F+++ +  N +SWN++I  ++Q E H DAL++F  M Q+G + D       L AC
Sbjct: 415 DARTVFDQL-ELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGAC 473

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
              +  +  + +H    +SG      V  SL+ MYAK G +  AE++ ++ D   + +WN
Sbjct: 474 TIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWN 533

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC-SHVGLVDGGLKLFECMTE 584
            LI GYA++G + EA++ ++++ +E +  D VTFI VL+AC S   L +G  K+      
Sbjct: 534 VLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEG--KMIHSNAV 591

Query: 585 VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMH 637
              ++  V     + ++ S+ G ++ A  +   M I+ +A  W  +L A   H
Sbjct: 592 ECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIR-SAVSWNGMLQAYAQH 643



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 129/584 (22%), Positives = 250/584 (42%), Gaps = 104/584 (17%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF     +    K G + +A K+F  M  ++  T+NSMISAY+ + R  +A  +F++M Q
Sbjct: 195 VFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQ 254

Query: 75  R----NLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEK 126
                + V++ S++   ++ + ++  + + + +    F  DLF    +IT Y R    E 
Sbjct: 255 EGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPED 314

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYT 182
           A ++F  +  + +   W+A++  +A  G+  EA +    M  + I    V++ S+L+G+T
Sbjct: 315 AAQVFGRM-KQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFT 373

Query: 183 KN------GEMHL-----------------------------ASKFFEAMEERDVVSWNL 207
                     +HL                             A   F+ +E  +++SWN 
Sbjct: 374 TPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNS 433

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFDQMPIRN 263
           M+  YV+ +  D A + F+ + +Q +    V+++T+L G    G     R+L  Q    +
Sbjct: 434 MIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTIL-GACTIGSHGRTRKLVHQCVEES 492

Query: 264 VVAWNAMIAA-----YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA---- 314
            +  + ++       Y + G+++ A  +  EM E+   +W  +I+GY    +  EA    
Sbjct: 493 GLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAY 552

Query: 315 -RRLLDQMPYKNIAAQTAM----ISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ 369
            +  L+ +P   +   + +     S  +   +M  +N +   + + DV+  N +   Y++
Sbjct: 553 QKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDS-DVIVKNALTNMYSK 611

Query: 370 CGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
           CG M+ A  +F  M  +  V+WN M+  YAQ  + ++ +K+  +                
Sbjct: 612 CGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRK---------------- 655

Query: 430 FLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ-IHHLAIKSGYVN 488
                           M QEG K +  T    LS+C+H   +  G Q  H L    G   
Sbjct: 656 ----------------MEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEV 699

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVD--VISWNSLIAG 530
                  L+ +  + G++Q AE       P++  +++W SL+  
Sbjct: 700 KTEHYGCLVDLLGRAGKLQEAEKYISKM-PLEPGIVTWASLLGA 742



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 4/135 (2%)

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           MY++CG + +A   F      +V+SWN +I+ Y+   +  EA+ LF  M++EGVAP+ +T
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 559 FIGVLSAC-SHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKG 617
            + VL++C S   L DG L     +   +    LV     ++++  + G L +A  + + 
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVA--TALLNMYGKCGTLLDAQSVFEE 118

Query: 618 MKIKPNAGIWGTLLG 632
           M  K N   W  +LG
Sbjct: 119 MAEK-NVVTWNAMLG 132



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 92/204 (45%), Gaps = 16/204 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V  +N       K G +E A +IF  M  ++ V++N M+ AYA++G   +  KL  +M
Sbjct: 597 SDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKM 656

Query: 73  PQR----NLVSWNSMIAGYLHNDKVKEARELF-----DKMFRPDLFSWALMITCYTRKGE 123
            Q     N +++ S+++   H   + E  + F     D+        +  ++    R G+
Sbjct: 657 EQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGK 716

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK----KLLDAMPSKNIVSWNSMLS 179
           L++A +    +P +     W +++       + +  K    KLL+  P  +  S + +LS
Sbjct: 717 LQEAEKYISKMPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPGNS--SASVVLS 774

Query: 180 G-YTKNGEMHLASKFFEAMEERDV 202
             Y++ G+   A+K   AM  R V
Sbjct: 775 NIYSERGDWKNAAKLRRAMASRRV 798


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 228/741 (30%), Positives = 378/741 (51%), Gaps = 63/741 (8%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           N ++S Y+K      AR++F++ P    VSW+S++  Y +N   +EA   F  M     R
Sbjct: 41  NHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVR 100

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLD- 164
            + F+  +++ C    G   +   +        D    NA+VA Y   G  +EA+++ D 
Sbjct: 101 CNEFALPIVLKCAPDAGLGVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDE 160

Query: 165 AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDS 220
           A   +N VSWN M+S + KN     A + F  M    V      ++ +++      DL++
Sbjct: 161 AARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEA 220

Query: 221 AWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ 276
             K    +     +++V +   ++  Y++ G +  A  +F ++P  +VV+WNA I+  V 
Sbjct: 221 GRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVL 280

Query: 277 RGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR-----RLLDQMPYKNIAAQ-- 329
            G  + A  L ++M     V     +   ++      A      R +     K  A    
Sbjct: 281 HGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDD 340

Query: 330 ---TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM--- 383
               A++  Y +   +D+A ++F+ I   D++ WN +I G +  G   E+++LF +M   
Sbjct: 341 YIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKE 400

Query: 384 ---VNK---------------------------------DIVTWNTMIAGYAQIRQMDDA 407
              +N+                                 D    N +I  Y +   +  A
Sbjct: 401 GSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYA 460

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
            K+FEE     N +++ ++I+   Q +   DA+K+F+ M ++G + D   L+  L+ACA 
Sbjct: 461 NKVFEEHSSD-NIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACAS 519

Query: 468 LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSL 527
           L+A + G+Q+H   IK  ++ D+F GN+L+  YAKCG I++A+L F       V+SW+++
Sbjct: 520 LSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAM 579

Query: 528 IAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYA 587
           I G A +G+   A+ +F  MV E +AP+ +T   VL AC+H GLVD     F  M E++ 
Sbjct: 580 IGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFG 639

Query: 588 IEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAV 647
           I+   EHY+CMIDLL RAG+LD+A E+V  M  + NA +WG LL A R+H++ +LG++A 
Sbjct: 640 IDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDPELGKLAA 699

Query: 648 EKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTF 707
           EKL  LEP+K+  + LL+N +A AG WDEV KVR  M+ S  +K+P  SW+E+K+++HTF
Sbjct: 700 EKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKEPAMSWVELKDRVHTF 759

Query: 708 LSGDPKQCRTAEICNTLKTLA 728
           + GD    R  +I   L+ L 
Sbjct: 760 IVGDKSHPRARDIYAKLEELG 780



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 118/517 (22%), Positives = 221/517 (42%), Gaps = 95/517 (18%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQ-KNTVTYNSMISAYAKNGRVNDARKLFEQMP 73
           +F  N  +   G  G V+EA ++F + ++ +N V++N M+SA+ KN R +DA +LF +M 
Sbjct: 135 IFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEM- 193

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDL 133
                 W+ +                     RP+ F ++ ++   T   +LE  R++  +
Sbjct: 194 -----VWSGV---------------------RPNEFGFSCVVNACTGSRDLEAGRKVHAM 227

Query: 134 LPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           +      +D    NA+V  Y+K+G+ + A  +   +P  ++VSWN+ +SG   +G    A
Sbjct: 228 VVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHA 287

Query: 191 SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWK----------FFQKIPEQNVVSWVTML 240
            +    M+   +V     L   ++      A              +   + +    V ++
Sbjct: 288 LELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALV 347

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM-PERNPVSWT 299
             YA+ G + +AR++F+ +P ++++ WNA+I+     G   E+  LF  M  E + ++ T
Sbjct: 348 DMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRT 407

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMIS-GYVQNKRMDE---------ANQIF 349
           T+       A L+    + D      +A +   +S  +V N  +D          AN++F
Sbjct: 408 TLAAVLKSTASLEA---ISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVF 464

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----------------------- 386
           ++  + +++ +  MI   +QC   ++AI LF +M+ K                       
Sbjct: 465 EEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYE 524

Query: 387 ----------------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
                           D+   N ++  YA+   ++DA   F  +   +  VSW+A+I G 
Sbjct: 525 QGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGL-PDKGVVSWSAMIGGL 583

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
            Q+     AL +F  M  E    +H TL   L AC H
Sbjct: 584 AQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNH 620



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 195/403 (48%), Gaps = 33/403 (8%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
            K+  T N+++  Y+K G ++ A  +F ++P+ ++VSWN+ I+G + +   + A EL  +
Sbjct: 234 DKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQ 293

Query: 103 M----FRPDLFSWA--LMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKI 153
           M      P++F+ +  L        G     R++   +       D     A+V  YAK 
Sbjct: 294 MKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKY 353

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE------RDVVSWNL 207
           G  ++A+K+ + +P K+++ WN+++SG +  G    +   F  M +      R  ++  L
Sbjct: 354 GLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVL 413

Query: 208 MLDGYVE-LDDLDSAWKFFQKI---PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRN 263
                +E + D        +KI    + +VV+   ++  Y +   +  A ++F++    N
Sbjct: 414 KSTASLEAISDTTQVHALAEKIGFLSDSHVVN--GLIDSYWKCNCLRYANKVFEEHSSDN 471

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARR--- 316
           ++A+ +MI A  Q    E+A +LF+EM     E +P   +++++    ++  ++ ++   
Sbjct: 472 IIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHA 531

Query: 317 -LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
            L+ +    ++ A  A++  Y +   +++A+  F  +    VV W+ MI G AQ G    
Sbjct: 532 HLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAMIGGLAQHGHGKR 591

Query: 376 AINLFRQMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEM 414
           A+++FR+MV++ I    +T  +++        +D+A   F  M
Sbjct: 592 ALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSM 634


>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
 gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
          Length = 837

 Score =  365 bits (938), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 234/765 (30%), Positives = 395/765 (51%), Gaps = 85/765 (11%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL---HNDK-----VK 94
           Q +    N ++ +Y K G V DA  LF++MP RNLVSW+S+++ Y    +N+K     ++
Sbjct: 72  QYDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLGYNEKALLYFLE 131

Query: 95  EARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYA 151
             R   DK+    L S  ++  C  R G  E   ++   +      ED     ++V  YA
Sbjct: 132 FQRTCVDKLNEYILAS--IIRACVQRDGG-EPGSQVHSYVIKSGFGEDVYVGTSLVVLYA 188

Query: 152 KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLD- 210
           K G  ++A+ + D +  K  V+W ++++GYTK+G   ++ + F  M E +V+    +L  
Sbjct: 189 KHGEIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSS 248

Query: 211 --------GYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR 262
                   GY++      A+   +   + +V ++  ++  Y + GR+   + LFD++ ++
Sbjct: 249 ILNACSVLGYLKGGKQIHAY-VLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVK 307

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEM------PERNPVSWTTMIDGYVRIAKLDEARR 316
           N+++W  MIA Y+Q     EA  L  EM      P+    S  +++     +  L   R+
Sbjct: 308 NIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACS--SVLTSCGSVDALQHGRQ 365

Query: 317 LLDQ-----MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
           +        + + N     A+I  Y +   +D+A ++FD +  H VV +N MI+GY++ G
Sbjct: 366 IHSYVIKVCLEHDNFVTN-ALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYSRQG 424

Query: 372 RMDEAINLFRQMVNK---------------------------------------DIVTWN 392
            +  A+ +F++M  K                                       D  T +
Sbjct: 425 YLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSLDKFTSS 484

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF---LQNEFHLDALKIFVLMTQE 449
            +I  Y++   + DA  +FE     ++ V WN+L SG+   L++E   +A K++  +   
Sbjct: 485 ALIDVYSKCSCIRDARYVFEGT-TNKDIVVWNSLFSGYNLQLKSE---EAFKLYSDLQLS 540

Query: 450 GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA 509
            ++ +  T A   +A + LA+L  G+Q H+  +K G  +D F+ N+L+ MYAKCG ++ A
Sbjct: 541 RERPNEFTFAALTTAASILASLPHGQQFHNQVMKMGLESDPFITNALVDMYAKCGSVEEA 600

Query: 510 ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
           E +F  +   D   WNS+I+ YA +G   EA+++FE MV   + P+ VTF+ VLSACSHV
Sbjct: 601 EKIFSSSVWKDTACWNSMISMYAQHGKVEEALRMFETMVSNNINPNYVTFVSVLSACSHV 660

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629
           G V+ GL+ +  M   Y IEP +EHYA ++ LL RAGRL EA E ++ M I+P A +W +
Sbjct: 661 GFVEDGLQHYNSMAR-YGIEPGIEHYASVVTLLGRAGRLTEAREFIEKMTIRPAALVWRS 719

Query: 630 LLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689
           LL ACR+  N++L + A E    ++P  +  Y +LSN+ A  G W +V+++R+ M+ +G 
Sbjct: 720 LLSACRVFGNVELAKHAAEMAISIDPMDSGSYVMLSNIFASKGMWGDVKRLRLKMDVNGV 779

Query: 690 QKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNT 734
            K+PG SWIEV  ++H F+S D     T  I   L  L  Q+++ 
Sbjct: 780 VKEPGQSWIEVNGEVHIFVSRDKVHDETDLIYLALDELTTQMKDV 824



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 133/638 (20%), Positives = 248/638 (38%), Gaps = 157/638 (24%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G  V+     +    K G +++A  +F  +  K  VT+ ++I+ Y K+GR   + +LF  
Sbjct: 174 GEDVYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNL 233

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           M + N++                           PD +  + ++   +  G L+  +++ 
Sbjct: 234 MMESNVI---------------------------PDKYVLSSILNACSVLGYLKGGKQIH 266

Query: 132 DLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN---- 184
             +   E   D + +N ++  Y K G     K L D +  KNI+SW +M++GY +N    
Sbjct: 267 AYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQNSYDW 326

Query: 185 ------GEM-----------------------------HLASKFFEAMEERDVVSWNLML 209
                 GEM                              + S   +   E D    N ++
Sbjct: 327 EAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVTNALI 386

Query: 210 DGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----- 264
           D Y + + LD A + F  +   +VV +  M+ GY+R G +  A  +F +M +++V     
Sbjct: 387 DMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGYLCGALEVFQEMRLKHVSPSFL 446

Query: 265 ----------------------------------VAWNAMIAAYVQRGQIEEAARLFIEM 290
                                                +A+I  Y +   I +A  +F   
Sbjct: 447 TFVSLLGLSAALLCLQLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIRDARYVFEGT 506

Query: 291 PERNPVSWTTMIDGYVRIAKLDEARRLL----------DQMPYKNIAAQTAMISGYVQNK 340
             ++ V W ++  GY    K +EA +L           ++  +  +    ++++     +
Sbjct: 507 TNKDIVVWNSLFSGYNLQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAASILASLPHGQ 566

Query: 341 RMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQ 400
           +    NQ+       D    N ++  YA+CG ++EA  +F   V KD   WN+MI+ YAQ
Sbjct: 567 QFH--NQVMKMGLESDPFITNALVDMYAKCGSVEEAEKIFSSSVWKDTACWNSMISMYAQ 624

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
             ++++A+++FE M      VS N                             ++ T   
Sbjct: 625 HGKVEEALRMFETM------VSNNI--------------------------NPNYVTFVS 652

Query: 461 ALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA-ELLFKDADPV 519
            LSAC+H+  ++ G Q ++   + G    +    S++T+  + GR+  A E + K     
Sbjct: 653 VLSACSHVGFVEDGLQHYNSMARYGIEPGIEHYASVVTLLGRAGRLTEAREFIEKMTIRP 712

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
             + W SL++   + GN  E  K   EM    ++ DP+
Sbjct: 713 AALVWRSLLSACRVFGN-VELAKHAAEM---AISIDPM 746



 Score = 39.7 bits (91), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 48/234 (20%), Positives = 93/234 (39%), Gaps = 35/234 (14%)

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
           R++H   +  G   D+F+ N L+  Y K G + +A  LF      +++SW+S+++ Y   
Sbjct: 60  RKVHCQVVLWGLQYDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQL 119

Query: 535 GNATEAIKLFEEMVMEGVAP-DPVTFIGVLSACSHVGLVDGGLKLFECMT------EVYA 587
           G   +A+  F E     V   +      ++ AC      + G ++   +       +VY 
Sbjct: 120 GYNEKALLYFLEFQRTCVDKLNEYILASIIRACVQRDGGEPGSQVHSYVIKSGFGEDVYV 179

Query: 588 IEPLVEHYA------------------------CMIDLLSRAGRLDEAFEMVKGM---KI 620
              LV  YA                         +I   +++GR + + ++   M    +
Sbjct: 180 GTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNV 239

Query: 621 KPNAGIWGTLLGACRMHQNIKLGR-IAVEKLSELEPQKTSCYALLSNMHAEAGR 673
            P+  +  ++L AC +   +K G+ I    L        S Y +L + + + GR
Sbjct: 240 IPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGR 293


>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 822

 Score =  365 bits (938), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 227/748 (30%), Positives = 386/748 (51%), Gaps = 65/748 (8%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR---- 105
           N ++ AY+K GRV DAR+LF++MP +NLVSW S I+ +  +   ++A  LF    R    
Sbjct: 50  NLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCEEDAVALFAAFQRASGG 109

Query: 106 --PDLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNEAK 160
             P+ F  A  +    +   +   +++  +   +    +     A++  YAK+G  + A 
Sbjct: 110 EAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGCIDAAM 169

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE------ 214
            + DA+P KN V+W ++++GY++ G+  +A + F  M    V     +L   V       
Sbjct: 170 LVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSACSALG 229

Query: 215 -LDDLDSAWKFFQKIPEQNVVSWV-TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
            L+       +  +I  +   S +  ++  Y +  R+  AR+LFD M  RN+V+W  MIA
Sbjct: 230 FLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVSWTTMIA 289

Query: 273 AYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA 328
            Y+Q     EA  +F ++ +     +  +  ++++    +A + + R++       N+ +
Sbjct: 290 GYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIKANLES 349

Query: 329 ----QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM- 383
               + ++I  Y + + + EA  +F+ +   D + +N MI+GY++ G +  AI++F +M 
Sbjct: 350 DEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMR 409

Query: 384 --------------------------------------VNKDIVTWNTMIAGYAQIRQMD 405
                                                  + D+   +++I  Y++   ++
Sbjct: 410 YCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVE 469

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
           DA  +F  M   R+ V WNA+I G  QNE   +A+K+F  +   G   +  T    ++  
Sbjct: 470 DAKAVFNLM-HNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALVTVA 528

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
           + L ++  G+Q H   IK+G  +D  V N+LI MYAKCG I+   LLF+     DVI WN
Sbjct: 529 STLVSMFHGQQFHAQIIKAGADSDHHVSNALIDMYAKCGFIKEGRLLFESTLGKDVICWN 588

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
           S+I+ YA +G A EA+ +F  M   GV P+ VTF+GVLSAC+H GLVD GL+ F+ M   
Sbjct: 589 SMISTYAQHGQAEEALYVFRMMGGTGVEPNYVTFVGVLSACAHAGLVDEGLRHFDFMKTK 648

Query: 586 YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI 645
           YAIEP  EHYA +++L  R+G+L  A E ++ M I+P A +W +LL AC +  N+++GR 
Sbjct: 649 YAIEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPAAAVWRSLLSACHLFGNVEIGRY 708

Query: 646 AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705
           A E     +P  +    L+SN++A  G W + +K+R  M+ +G  K+PG SWIEV  ++H
Sbjct: 709 ATEMALLADPADSGPSVLMSNIYASRGLWSDAQKLRQGMDCAGVVKEPGYSWIEVMKEVH 768

Query: 706 TFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           TF++   +      I + L  L + ++N
Sbjct: 769 TFIARGREHPEADVIYSLLDELTSILKN 796



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/417 (28%), Positives = 185/417 (44%), Gaps = 83/417 (19%)

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF---- 256
           D+   NL+L  Y +L  +  A + F ++P +N+VSW + +S +A++G   +A  LF    
Sbjct: 45  DLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCEEDAVALFAAFQ 104

Query: 257 --------------------------------DQMPIR-----NVVAWNAMIAAYVQRGQ 279
                                             + +R     NV    A+I  Y + G 
Sbjct: 105 RASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGC 164

Query: 280 IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI---------AAQT 330
           I+ A  +F  +P +NPV+WT +I GY +I +   A  L  +M    +         A   
Sbjct: 165 IDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSA 224

Query: 331 AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
               G+++  R          + T D    N +I  Y +C R+  A  LF  M N+++V+
Sbjct: 225 CSALGFLEGGRQTHGYAYRIAVET-DASVINALIDLYCKCSRLSLARKLFDCMENRNLVS 283

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
           W TMIAGY                                +QN    +A+ +F  ++QEG
Sbjct: 284 WTTMIAGY--------------------------------MQNSCDAEAMAMFWQLSQEG 311

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
            + D    A  L++C  LAA+  GRQ+H  AIK+   +D +V NSLI MYAKC  +  A 
Sbjct: 312 WQPDVFACASILNSCGSLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEAR 371

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
            +F+     D IS+N++I GY+  G+   AI +F +M    + P P+TF+ +L   S
Sbjct: 372 AVFEALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSS 428



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 166/327 (50%), Gaps = 46/327 (14%)

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMG 415
           D+   N++++ Y++ GR+ +A  LF +M +K++V+W + I+ +AQ    +DAV +F    
Sbjct: 45  DLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCEEDAVALFAAFQ 104

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
           +            G   NEF                      LA AL ACA   A+  G+
Sbjct: 105 RASG---------GEAPNEF---------------------LLASALRACAQSRAVSFGQ 134

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV-DVISWNSLIAGYAIN 534
           Q+H +A++ G   +++VG +LI +YAK G I  A L+F DA PV + ++W ++I GY+  
Sbjct: 135 QVHGVAVRIGLDGNVYVGTALINLYAKVGCIDAAMLVF-DALPVKNPVTWTAVITGYSQI 193

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEH 594
           G    A++LF +M ++GV PD       +SACS +G ++GG +     T  YA    VE 
Sbjct: 194 GQGGVALELFGKMGLDGVRPDRFVLASAVSACSALGFLEGGRQ-----THGYAYRIAVET 248

Query: 595 YA----CMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVE-K 649
            A     +IDL  +  RL  A ++   M+ + N   W T++ A  M  +     +A+  +
Sbjct: 249 DASVINALIDLYCKCSRLSLARKLFDCMENR-NLVSWTTMI-AGYMQNSCDAEAMAMFWQ 306

Query: 650 LSE--LEPQKTSCYALLSNMHAEAGRW 674
           LS+   +P   +C ++L++  + A  W
Sbjct: 307 LSQEGWQPDVFACASILNSCGSLAAIW 333



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/340 (22%), Positives = 163/340 (47%), Gaps = 30/340 (8%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           + +N  I    K   + EA  +F  +++ + ++YN+MI  Y++ G +  A  +F +M   
Sbjct: 352 YVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYC 411

Query: 76  NL----VSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKA 127
           +L    +++ S++        ++ ++++   + +     DL++ + +I  Y++   +E A
Sbjct: 412 SLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVEDA 471

Query: 128 RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------PSK----NIVSWNSM 177
           + +F+L+ N+ D   WNAM+ G A+     EA KL + +      P++     +V+  S 
Sbjct: 472 KAVFNLMHNR-DMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALVTVAST 530

Query: 178 LSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV 237
           L       + H  ++  +A  + D    N ++D Y +   +      F+    ++V+ W 
Sbjct: 531 LVSMFHGQQFH--AQIIKAGADSDHHVSNALIDMYAKCGFIKEGRLLFESTLGKDVICWN 588

Query: 238 TMLSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           +M+S YA++G+  EA  +F  M       N V +  +++A    G ++E  R F  M  +
Sbjct: 589 SMISTYAQHGQAEEALYVFRMMGGTGVEPNYVTFVGVLSACAHAGLVDEGLRHFDFMKTK 648

Query: 294 NPVS-----WTTMIDGYVRIAKLDEARRLLDQMPYKNIAA 328
             +      + ++++ + R  KL  A+  +++MP +  AA
Sbjct: 649 YAIEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPAAA 688



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 112/245 (45%), Gaps = 21/245 (8%)

Query: 455 HSTLACALSACAHLAALQLGRQI---HHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL 511
           H  LA  L +C  LA  +L R +   H  A+ +G + DLF+ N L+  Y+K GR+++A  
Sbjct: 10  HGGLAQLLLSC--LAGDRLHRLLPLAHARAVVTGALPDLFLANLLLRAYSKLGRVRDARR 67

Query: 512 LFKDADPVDVISWNSLIAGYAINGNATEAIKLFE--EMVMEGVAPDPVTFIGVLSACSHV 569
           LF      +++SW S I+ +A +G   +A+ LF   +    G AP+       L AC+  
Sbjct: 68  LFDRMPHKNLVSWGSAISMHAQHGCEEDAVALFAAFQRASGGEAPNEFLLASALRACAQS 127

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629
             V  G ++      +  ++  V     +I+L ++ G +D A  +   + +K N   W  
Sbjct: 128 RAVSFGQQVHGVAVRI-GLDGNVYVGTALINLYAKVGCIDAAMLVFDALPVK-NPVTWTA 185

Query: 630 LLGACRMHQNIKLGRIAVEKLSE--LEPQKTSCYALLSNMHA-------EAGRWDEVEKV 680
           ++     +  I  G +A+E   +  L+  +   + L S + A       E GR       
Sbjct: 186 VITG---YSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSACSALGFLEGGRQTHGYAY 242

Query: 681 RVSME 685
           R+++E
Sbjct: 243 RIAVE 247


>gi|357129947|ref|XP_003566620.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 902

 Score =  365 bits (938), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 241/809 (29%), Positives = 382/809 (47%), Gaps = 132/809 (16%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----P 106
           ++++ YA+ GRV DAR++F  +   + V W SMI+GY    + +EA  LF +M +    P
Sbjct: 71  ALVNMYARCGRVGDARRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSP 130

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAK--------IGNYNE 158
           D  +   ++   T  G LE AR L   +P    T  WNA+++GYA+         G Y +
Sbjct: 131 DRVTCVAVVCALTALGRLEDARTLLHRMPAPSSTVAWNAVISGYAQQSGIEHEVFGLYKD 190

Query: 159 AK------------KLLDAMPS--------------------KNIVSWNSMLSGYTKNGE 186
            +             +L A  +                     N+   +S+++ Y K G 
Sbjct: 191 MRCWGLWPTRSTFASMLSAAANATAFIEGRQVHAAAVRHGLDANVFVGSSLINLYAKCGC 250

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSG 242
           +  A   F+   E++VV WN ML+G V  +    A + F  +     E +  ++V++L  
Sbjct: 251 IGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSVLGA 310

Query: 243 -----------------------------------YARNGRMLEARRLFDQMPIRNVVAW 267
                                              +++ G + +A+ LF+ +  ++ V+W
Sbjct: 311 CAHLDSHCLGRQVQCVTIKNCMDASLFVANATLDMHSKFGAIDDAKTLFNLITYKDTVSW 370

Query: 268 NAMIAAYVQRGQIEEAARLF----IEMPERNPVSWTTMIDGYVRIAKLDEARRL----LD 319
           NA++       + EEA  +     ++    + VS+ T+I+    I   +  +++    + 
Sbjct: 371 NALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEVSFATVINACSNIRATETGKQIHCLAMK 430

Query: 320 QMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
                N A  +++I  Y ++  ++   ++  ++    +V  NV+I G  Q  R DEAI+L
Sbjct: 431 HSICSNHAVGSSLIDFYSKHGDVESCRKVLAQVDASSIVPRNVLIAGLVQNNREDEAIDL 490

Query: 380 FRQM----------------------------------------VNKDIVTWNTMIAGYA 399
           F+Q+                                        +N D     +++  Y 
Sbjct: 491 FQQVLRDGLKPSSFTFSSILSGCTGLLSSIIGKQVHCYTLKSGFLNDDTSVGVSLVGTYL 550

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
           + R  +DA K+  EM   +N V W A++SG+ QN +   +L  F  M       D  T A
Sbjct: 551 KARMPEDANKLLIEMPDHKNLVEWTAIVSGYAQNGYSYQSLLSFWRMRSYDVHPDEVTFA 610

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD-ADP 518
             L AC+ + AL  G++IH L IKSG+ +     +++I MY+KCG I ++   FK+    
Sbjct: 611 SILKACSEMTALSDGKEIHGLIIKSGFGSYKTATSAIIDMYSKCGDIISSFEAFKELKSK 670

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
            D+  WNS+I G+A NG A EA+ LF++M    +  D VTF+GVL AC+H GL+  G   
Sbjct: 671 QDITLWNSMILGFAKNGYADEALLLFQKMQDSQIKSDEVTFLGVLIACAHAGLISEGRHY 730

Query: 579 FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQ 638
           F+ M++VY I P V+HYAC IDLL R G L EA E++  +  +P+  IW T L ACRMH+
Sbjct: 731 FDSMSKVYGIMPRVDHYACFIDLLGRGGHLQEAQEVINELPFRPDGVIWATYLAACRMHK 790

Query: 639 NIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWI 698
           + + G IA ++L ELEPQ +S Y LLSNM+A AG W E +  R +M   GA K PGCSWI
Sbjct: 791 DEERGEIAAKELVELEPQNSSTYVLLSNMYAAAGNWVEAKMAREAMREKGATKFPGCSWI 850

Query: 699 EVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
            V N+   FL  D        I   L  L
Sbjct: 851 TVGNKTSLFLVQDKNHLGALRIYEMLDNL 879



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 172/374 (45%), Gaps = 43/374 (11%)

Query: 296 VSWTTMIDGYVRIAKLDEARRLL-DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
            S T ++D +VR  +      +  DQ       +  + +   V  K   +A+   +K G 
Sbjct: 6   TSATAVLDAFVRARRCSAGGGVRPDQFDLAATLSACSRLGALVSGK---QAHCDAEKRGL 62

Query: 355 -HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIF-- 411
                C   ++  YA+CGR+ +A  +F  +   D V W +MI+GY +  +  +AV +F  
Sbjct: 63  GSGAFCAAALVNMYARCGRVGDARRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTR 122

Query: 412 -EEMGKR--------------------------------RNTVSWNALISGFLQNE-FHL 437
            E+MG                                   +TV+WNA+ISG+ Q      
Sbjct: 123 MEKMGSSPDRVTCVAVVCALTALGRLEDARTLLHRMPAPSSTVAWNAVISGYAQQSGIEH 182

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
           +   ++  M   G     ST A  LSA A+  A   GRQ+H  A++ G   ++FVG+SLI
Sbjct: 183 EVFGLYKDMRCWGLWPTRSTFASMLSAAANATAFIEGRQVHAAAVRHGLDANVFVGSSLI 242

Query: 498 TMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
            +YAKCG I +A L+F  +   +V+ WN+++ G   N    EAI++F  M   G+  D  
Sbjct: 243 NLYAKCGCIGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEF 302

Query: 558 TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKG 617
           T++ VL AC+H+     G ++ +C+T    ++  +      +D+ S+ G +D+A  +   
Sbjct: 303 TYVSVLGACAHLDSHCLGRQV-QCVTIKNCMDASLFVANATLDMHSKFGAIDDAKTLFNL 361

Query: 618 MKIKPNAGIWGTLL 631
           +  K     W  LL
Sbjct: 362 ITYKDTVS-WNALL 374


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  365 bits (938), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 222/720 (30%), Positives = 361/720 (50%), Gaps = 130/720 (18%)

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG----------EM 187
           +D +  N ++  Y+K   +  A+KL+D     ++VSW++++SGY +NG          EM
Sbjct: 89  DDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEM 148

Query: 188 HLA---------SKFFEAME--------------------ERDVVSWNLMLDGYVELDDL 218
           HL          S   +A                      E DV   N ++  Y + D+ 
Sbjct: 149 HLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEF 208

Query: 219 DSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV-------------- 264
             + + F +IPE+NVVSW  + S Y +     EA  LF +M +  +              
Sbjct: 209 LDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNAC 268

Query: 265 -------------------------VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWT 299
                                     + NA++  Y + G + +A  +F ++ + + VSW 
Sbjct: 269 TGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWN 328

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYK------------NIAAQTAMISGYVQNKRMDEANQ 347
            +I G V     ++A  LL QM  +            ++     ++  Y +   +++A  
Sbjct: 329 AVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARM 388

Query: 348 IFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM------------------------ 383
            F+ +   D++ WN +I GY+Q     EA++LF +M                        
Sbjct: 389 AFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQV 448

Query: 384 ---------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
                           + DI   N++I  Y +   ++DA +IFEE     + VS+ ++I+
Sbjct: 449 VHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEEC-TIGDLVSFTSMIT 507

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
            + Q     +ALK+F+ M     K D    +  L+ACA+L+A + G+Q+H   +K G+V 
Sbjct: 508 AYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVL 567

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           D+F GNSL+ MYAKCG I +A   F +     ++SW+++I G A +G+  +A++LF +M+
Sbjct: 568 DIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQML 627

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
            EGV+P+ +T + VL AC+H GLV      FE M E++  +P+ EHYACMIDLL RAG++
Sbjct: 628 KEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKI 687

Query: 609 DEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMH 668
           +EA E+V  M  + NA +WG LLGA R+H++++LGR A E L  LEP+K+  + LL+N++
Sbjct: 688 NEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIY 747

Query: 669 AEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLA 728
           A AG+W+ V +VR  M  S  +K+PG SWIEVK++++TFL GD    R+ EI   L  L+
Sbjct: 748 ASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELS 807



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 125/556 (22%), Positives = 237/556 (42%), Gaps = 108/556 (19%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP---- 73
           +N  I    K      A K+  + S+ + V+++++IS YA+NG    A   F +M     
Sbjct: 94  RNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGV 153

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARE 129
           + N  +++S++        ++  +++   +    F  D+F    ++  Y +  E   ++ 
Sbjct: 154 KCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKR 213

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI------------------ 171
           LFD +P + +   WNA+ + Y +     EA  L   M    I                  
Sbjct: 214 LFDEIPER-NVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLR 272

Query: 172 ---------------------VSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLD 210
                                 S N+++  Y K G++  A   FE +++ D+VSWN ++ 
Sbjct: 273 DSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIA 332

Query: 211 GYVELDDLDSAWKFFQKIPEQ------------NVVSWVTMLSGYARNGRMLEARRLFDQ 258
           G V  +  + A +   ++  Q            ++   V ++  Y++   + +AR  F+ 
Sbjct: 333 GCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNL 392

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEA 314
           +P ++++AWNA+I+ Y Q  +  EA  LF+EM +     N  + +T++     +  +   
Sbjct: 393 LPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVC 452

Query: 315 RRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC 370
           R++    +    + +I    ++I  Y +   +++A +IF++    D+V +  MI  YAQ 
Sbjct: 453 RQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQY 512

Query: 371 GRMDEAINLFRQMVNK---------------------------------------DIVTW 391
           G+ +EA+ LF +M +                                        DI   
Sbjct: 513 GQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAG 572

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
           N+++  YA+   +DDA + F E+   R  VSW+A+I G  Q+     AL++F  M +EG 
Sbjct: 573 NSLVNMYAKCGSIDDAGRAFSEL-TERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGV 631

Query: 452 KADHSTLACALSACAH 467
             +H TL   L AC H
Sbjct: 632 SPNHITLVSVLGACNH 647



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 144/328 (43%), Gaps = 52/328 (15%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S ++  N  I   GK   VE+A +IF + +  + V++ SMI+AYA+ G+  +A KLF +M
Sbjct: 466 SDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEM 525

Query: 73  ------PQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKG 122
                 P R + S  S++    +    ++ ++L   +    F  D+F+   ++  Y + G
Sbjct: 526 QDMELKPDRFVCS--SLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCG 583

Query: 123 ELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM----PSKNIVSWNSML 178
            ++ A   F  L  +     W+AM+ G A+ G+  +A +L + M     S N ++  S+L
Sbjct: 584 SIDDAGRAFSELTER-GIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVL 642

Query: 179 SGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
                 G +  A  +FE+MEE                         F   P Q    +  
Sbjct: 643 GACNHAGLVTEAKLYFESMEE------------------------LFGFKPMQE--HYAC 676

Query: 239 MLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAAR----LFIEMPER 293
           M+    R G++ EA  L ++MP   N   W A++ A      +E   R    LFI  PE+
Sbjct: 677 MIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEK 736

Query: 294 NPVSWTTMIDGYVRIAK---LDEARRLL 318
           +  +   + + Y    K   + E RRL+
Sbjct: 737 SG-THVLLANIYASAGKWENVAEVRRLM 763



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 60/108 (55%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           LS C    +L+ G QIH    KSG  +D  + N LI +Y+KC     A  L  ++   D+
Sbjct: 63  LSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDL 122

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
           +SW++LI+GYA NG    A+  F EM + GV  +  TF  VL ACS V
Sbjct: 123 VSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIV 170


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 213/669 (31%), Positives = 357/669 (53%), Gaps = 68/669 (10%)

Query: 128 RELFDLLPNKEDTACWN------AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
           +EL  +LP       +N       +++ + K  +  EA ++ + +  K  V +++ML GY
Sbjct: 58  KELHQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGY 117

Query: 182 TKNGEMHLASKFFEAMEERDVV------SWNLMLDGYVELDDLDSAWKFFQKIP----EQ 231
            KN  +  A +F+E M   +V+      ++ L L G  E  DL    +    +     + 
Sbjct: 118 AKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSG--ENLDLRRGREIHGMVITNGFQS 175

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
           N+ +   +++ YA+  ++ +A ++F++MP R++V+WN ++A Y Q G    A ++ ++M 
Sbjct: 176 NLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQ 235

Query: 292 E--RNPVSWTTMIDGYVRIAKLDEAR--RLLDQMPYKN-----IAAQTAMISGYVQNKRM 342
           E  + P S  T++     +A L   R  R +    ++      +   TAM+  Y +   +
Sbjct: 236 EAGQKPDS-ITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSV 294

Query: 343 DEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK---------------- 386
             A  +F  + + +VV WN MI GYAQ G  +EA   F +M+++                
Sbjct: 295 RSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHAC 354

Query: 387 -----------------------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
                                  D+   N++I+ Y++ +++D A  +F  + K +  V+W
Sbjct: 355 ANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNL-KHKTVVTW 413

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
           NA+I G+ QN    +AL +F  M     K D  TL   ++A A L+  +  + IH LAI+
Sbjct: 414 NAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIR 473

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
           +    ++FV  +LI  +AKCG IQ A  LF       VI+WN++I GY  NG+  EA+ L
Sbjct: 474 TLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDL 533

Query: 544 FEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLS 603
           F EM    V P+ +TF+ V++ACSH GLV+ G+  FE M E Y +EP ++HY  M+DLL 
Sbjct: 534 FNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLG 593

Query: 604 RAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYAL 663
           RAGRLD+A++ ++ M +KP   + G +LGACR+H+N++LG    ++L +L+P     + L
Sbjct: 594 RAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVL 653

Query: 664 LSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNT 723
           L+NM+A A  WD+V +VR +ME  G QK PGCS +E++N++HTF SG     ++  I   
Sbjct: 654 LANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAY 713

Query: 724 LKTLAAQIR 732
           L+TL  +++
Sbjct: 714 LETLGDEMK 722



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 119/408 (29%), Positives = 201/408 (49%), Gaps = 45/408 (11%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           Q N     ++++ YAK  ++ DA K+FE+MPQR+LVSWN+++AGY  N   + A ++  +
Sbjct: 174 QSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQ 233

Query: 103 M----FRPDLFSWALMITCYTRKGELEKAREL--------FDLLPNKEDTACWNAMVAGY 150
           M     +PD  +   ++        L   R +        F+ + N        AM+  Y
Sbjct: 234 MQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVN-----VATAMLDTY 288

Query: 151 AKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLD 210
            K G+   A+ +   M S+N+VSWN+M+ GY +NGE   A   F  M +  V   N+ + 
Sbjct: 289 FKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMM 348

Query: 211 GYVE----LDDLDSAWKFFQKIPEQNV---VSWV-TMLSGYARNGRMLEARRLFDQMPIR 262
           G +     L DL+      + + E+ +   VS + +++S Y++  R+  A  +F  +  +
Sbjct: 349 GALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHK 408

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWT--TMIDGYVRIAKLDEA---- 314
            VV WNAMI  Y Q G + EA  LF EM   +  P S+T  ++I     ++   +A    
Sbjct: 409 TVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIH 468

Query: 315 ----RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC 370
               R L+D    KN+   TA+I  + +   +  A ++FD +    V+ WN MI GY   
Sbjct: 469 GLAIRTLMD----KNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTN 524

Query: 371 GRMDEAINLFRQMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEM 414
           G   EA++LF +M N  +    +T+ ++IA  +    +++ +  FE M
Sbjct: 525 GHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESM 572



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 163/392 (41%), Gaps = 68/392 (17%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K G V  A  +F  MS +N V++N+MI  YA+NG   +A   F +M    +   N  + G
Sbjct: 290 KCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMG 349

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACW 143
            LH                           C    G+LE+ R +  LL  K+   D +  
Sbjct: 350 ALH--------------------------AC-ANLGDLERGRYVHRLLDEKKIGFDVSVM 382

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N++++ Y+K    + A  +   +  K +V+WN+M+ GY +NG ++ A   F  M+  D+ 
Sbjct: 383 NSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIK 442

Query: 204 SWNLMLDGYVE-LDDLD----SAWKF---FQKIPEQNVVSWVTMLSGYARNGRMLEARRL 255
             +  L   +  L DL     + W      + + ++NV     ++  +A+ G +  AR+L
Sbjct: 443 PDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKL 502

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKL 311
           FD M  R+V+ WNAMI  Y   G   EA  LF EM     + N +++ ++I        +
Sbjct: 503 FDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLV 562

Query: 312 DEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
           +E     + M              Y     MD    + D +G               + G
Sbjct: 563 EEGMYYFESMK-----------ENYGLEPTMDHYGAMVDLLG---------------RAG 596

Query: 372 RMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQ 403
           R+D+A    + M  K  +T    + G  +I +
Sbjct: 597 RLDDAWKFIQDMPVKPGITVLGAMLGACRIHK 628



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 104/468 (22%), Positives = 184/468 (39%), Gaps = 130/468 (27%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F     +    K  ++E+A K+F +M Q++ V++N++++ YA+NG    A ++  QM
Sbjct: 175 SNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQM 234

Query: 73  PQR-------NLVS--------------------------------WNSMIAGYLHNDKV 93
            +         LVS                                  +M+  Y     V
Sbjct: 235 QEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSV 294

Query: 94  KEARELFDKMFRPDLFSWALMITCYTRKGE------------------------------ 123
           + AR +F  M   ++ SW  MI  Y + GE                              
Sbjct: 295 RSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHAC 354

Query: 124 -----LEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN 175
                LE+ R +  LL  K+   D +  N++++ Y+K    + A  +   +  K +V+WN
Sbjct: 355 ANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWN 414

Query: 176 SMLSGYTKNGEMHLASKFFEAMEERDV----------------------VSW-------- 205
           +M+ GY +NG ++ A   F  M+  D+                        W        
Sbjct: 415 AMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRT 474

Query: 206 ---------NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF 256
                      ++D + +   + +A K F  + E++V++W  M+ GY  NG   EA  LF
Sbjct: 475 LMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLF 534

Query: 257 DQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWT-----TMIDGYVR 307
           ++M   +V    + + ++IAA    G +EE    F  M E   +  T      M+D   R
Sbjct: 535 NEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGR 594

Query: 308 IAKLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMD----EANQIFD 350
             +LD+A + +  MP K  I    AM+     +K ++     A+++FD
Sbjct: 595 AGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKTADELFD 642



 Score = 97.1 bits (240), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 128/268 (47%), Gaps = 31/268 (11%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  I+   K  RV+ A  +F  +  K  VT+N+MI  YA+NG VN+A  LF +M   ++ 
Sbjct: 383 NSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIK 442

Query: 78  ---VSWNSMIAGYLHNDKVKEA--------RELFDKMFRPDLFSWALMITCYTRKGELEK 126
               +  S+I         ++A        R L DK    ++F    +I  + + G ++ 
Sbjct: 443 PDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDK----NVFVCTALIDTHAKCGAIQT 498

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYT 182
           AR+LFDL+  +     WNAM+ GY   G+  EA  L + M + ++    +++ S+++  +
Sbjct: 499 ARKLFDLMQERH-VITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACS 557

Query: 183 KNGEMHLASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV 237
            +G +     +FE+M+E       +  +  M+D       LD AWKF Q +P +  ++ +
Sbjct: 558 HSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVL 617

Query: 238 TMLSGYARNGRMLE-----ARRLFDQMP 260
             + G  R  + +E     A  LFD  P
Sbjct: 618 GAMLGACRIHKNVELGEKTADELFDLDP 645


>gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 1131

 Score =  365 bits (937), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 234/744 (31%), Positives = 378/744 (50%), Gaps = 75/744 (10%)

Query: 27  KSGRVEEAIKIFSQMSQ----KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNS 82
           + G   EA+K+F +M +     + +   ++I+AY   GR+ DARKLF Q+P  N+V+WN 
Sbjct: 220 RDGFPMEAVKVFDKMQRVGHVPDQIALVTVINAYVALGRLADARKLFTQIPNPNVVAWNV 279

Query: 83  MIAGYLHNDKVKEARELFD-------KMFRPDLFSWALMITCYT--RKGELEKARELFDL 133
           MI+G+      +EA   F        K  R  L S    I   +    G +  A+ + + 
Sbjct: 280 MISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEG 339

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
           L   ++    +A+V  YAK    + AK++ +++  +NIV WN+ML G+ +NG      +F
Sbjct: 340 L--DDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEF 397

Query: 194 FEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYAR 245
           F  M+    + D  ++  +      L  LD   +    + +    S +     ++  YA+
Sbjct: 398 FSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMYAK 457

Query: 246 NGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PER------ 293
           +G + EAR+ F+ M I + V+WNA+I  YVQ    +EA  +F  M      P+       
Sbjct: 458 SGALKEARKQFEFMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASI 517

Query: 294 ---------------------------NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
                                      +  + +++ID YV+   +  AR +   MPY+N+
Sbjct: 518 VSACANVKEFKQGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPYRNV 577

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
            +  A+I+GY  +  ++EA  +F +I    +    V   G          +NL RQ ++ 
Sbjct: 578 VSINALIAGYTMS-HLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQ-IHG 635

Query: 387 DIVTWN----------TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
            ++ W           +++  Y   ++  D+  +F E+   +  V W ALISG+ Q   H
Sbjct: 636 QVMKWGFLSSSEMVCVSLLCMYMNSQRFADSETLFSELQYPKGLVVWTALISGYAQQNHH 695

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSL 496
             AL+ +  M  +    D +T A  L ACA +++LQ G+++H L   +G+  D    +SL
Sbjct: 696 EKALQFYQHMRSDNILPDQATFASVLRACAGMSSLQTGQEVHSLIFHTGFNMDEITCSSL 755

Query: 497 ITMYAKCGRIQNAELLFKDADPVD-VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555
           I MYAKCG ++ +  +F +    + VISWNS+I G A NG A EA+++F++M  + + PD
Sbjct: 756 IDMYAKCGDVKGSLQVFHEMPRRNSVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPD 815

Query: 556 PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV 615
            VTF+GVLSACSH G V  G K+F+ M   Y ++P V+H  CM+D+L R G L+EA E +
Sbjct: 816 EVTFLGVLSACSHAGRVSEGRKVFDLMVNNYKLQPRVDHLGCMVDILGRWGFLNEAEEFI 875

Query: 616 KGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWD 675
             +  K +  +W TLLGACR H +   G+ A  KL EL+PQ +S Y LLS ++AE+  W 
Sbjct: 876 NKLGCKADPMLWSTLLGACRKHGDEVRGKRAANKLMELKPQSSSSYVLLSGLYAESENWS 935

Query: 676 EVEKVRVSMEGSGAQKQPGCSWIE 699
             + +R  M+  G +K PG SWIE
Sbjct: 936 GADSLRREMKLKGVKKLPGYSWIE 959



 Score =  225 bits (574), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 161/590 (27%), Positives = 282/590 (47%), Gaps = 97/590 (16%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----R 105
           N ++  Y K G V+ A+K F ++ ++++ +WNS+++ YL +       + F  M+    R
Sbjct: 80  NVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNHGVR 139

Query: 106 PDLFSWALMITCYTRKGELEKAREL----FDLLPNKEDTACWNAMVAGYAKIGNYNEAKK 161
           P+ F++A++++  +   ++   +++    F +      + C   ++  YAK  N  +A+ 
Sbjct: 140 PNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGFGFR-SFCQGGLIDMYAKCRNLRDARL 198

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA 221
           + D                    G ++L           D VSW  ++ GYV       A
Sbjct: 199 VFD--------------------GALNL-----------DTVSWTTLIAGYVRDGFPMEA 227

Query: 222 WKFFQK------IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
            K F K      +P+Q  ++ VT+++ Y   GR+ +AR+LF Q+P  NVVAWN MI+ + 
Sbjct: 228 VKVFDKMQRVGHVPDQ--IALVTVINAYVALGRLADARKLFTQIPNPNVVAWNVMISGHA 285

Query: 276 QRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYK----NIA 327
           +RG  EEA   F+E+ +        S  +++     ++ L+    +  Q   +    N+ 
Sbjct: 286 KRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVY 345

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM---- 383
             +A+++ Y +  +MD A Q+F+ +G  ++V WN M+ G+AQ G   E +  F  M    
Sbjct: 346 VGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHG 405

Query: 384 -----------------------------------VNKDIVTWNTMIAGYAQIRQMDDAV 408
                                                 ++   N ++  YA+   + +A 
Sbjct: 406 PQPDEFTFTSIFSACASLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGALKEAR 465

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
           K FE M K  + VSWNA+I G++Q E++ +A  +F  M   G   D  +LA  +SACA++
Sbjct: 466 KQFEFM-KIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANV 524

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
              + G+Q H L +K G       G+SLI MY KCG +  A  +F      +V+S N+LI
Sbjct: 525 KEFKQGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPYRNVVSINALI 584

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
           AGY ++ +  EAI LF+E+ M G+ P  VTF G+L  C    +++ G ++
Sbjct: 585 AGYTMS-HLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQI 633



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 116/508 (22%), Positives = 230/508 (45%), Gaps = 62/508 (12%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM----PQRNL 77
           +    K  +++ A ++F+ + ++N V +N+M+  +A+NG   +  + F  M    PQ + 
Sbjct: 351 VNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDE 410

Query: 78  VSWNSMIA-----------GYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEK 126
            ++ S+ +           G LH   +K         F  +LF    ++  Y + G L++
Sbjct: 411 FTFTSIFSACASLHYLDFGGQLHTVMIKNK-------FTSNLFVANALVDMYAKSGALKE 463

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYT 182
           AR+ F+ +    D   WNA++ GY +    +EA  +   M S  +    VS  S++S   
Sbjct: 464 ARKQFEFM-KIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACA 522

Query: 183 KNGEMHLASK----FFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
              E     +      +   +    + + ++D YV+   + +A   F  +P +NVVS   
Sbjct: 523 NVKEFKQGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPYRNVVSINA 582

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ--------------RGQIEEAA 284
           +++GY  +  + EA  LF ++ +  +       A  +                GQ+ +  
Sbjct: 583 LIAGYTMS-HLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWG 641

Query: 285 RLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY-KNIAAQTAMISGYVQNKRMD 343
             F+   E   VS   M   Y+   +  ++  L  ++ Y K +   TA+ISGY Q    +
Sbjct: 642 --FLSSSEMVCVSLLCM---YMNSQRFADSETLFSELQYPKGLVVWTALISGYAQQNHHE 696

Query: 344 EANQIFDKIGTHDVV----CWNVMIKGYA-----QCGRMDEAINLFRQMVNKDIVTWNTM 394
           +A Q +  + + +++     +  +++  A     Q G+   ++ +F    N D +T +++
Sbjct: 697 KALQFYQHMRSDNILPDQATFASVLRACAGMSSLQTGQEVHSL-IFHTGFNMDEITCSSL 755

Query: 395 IAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
           I  YA+   +  ++++F EM +R + +SWN++I G  +N +  +AL+IF  M Q+    D
Sbjct: 756 IDMYAKCGDVKGSLQVFHEMPRRNSVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPD 815

Query: 455 HSTLACALSACAHLAALQLGRQIHHLAI 482
             T    LSAC+H   +  GR++  L +
Sbjct: 816 EVTFLGVLSACSHAGRVSEGRKVFDLMV 843



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 147/297 (49%), Gaps = 10/297 (3%)

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
           N ++  Y +   +D A K F  + ++++  +WN+++S +L +      ++ FV M   G 
Sbjct: 80  NVIVDLYVKCGNVDFAQKAFSRL-EKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNHGV 138

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL 511
           + +  T A  LSAC+ L  +  G+Q+H    K G+    F    LI MYAKC  +++A L
Sbjct: 139 RPNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGFGFRSFCQGGLIDMYAKCRNLRDARL 198

Query: 512 LFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
           +F  A  +D +SW +LIAGY  +G   EA+K+F++M   G  PD +  + V++A   +G 
Sbjct: 199 VFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVTVINAYVALGR 258

Query: 572 VDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA---FEMVKGMKIKPNAGIWG 628
           +    KLF   T++    P V  +  MI   ++ G  +EA   F  +K   +K      G
Sbjct: 259 LADARKLF---TQI--PNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLG 313

Query: 629 TLLGACRMHQNIKLGR-IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSM 684
           ++L A      +  G  +  + + E         + L NM+A+  + D  ++V  S+
Sbjct: 314 SVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSL 370



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 2/108 (1%)

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
           A L AL   + IH  ++K G      +GN ++ +Y KCG +  A+  F   +  DV +WN
Sbjct: 52  AVLQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWN 111

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVD 573
           S+++ Y  +G     ++ F  M   GV P+  TF  VLSACS  GL D
Sbjct: 112 SVLSMYLDHGLFATVVQSFVCMWNHGVRPNEFTFAMVLSACS--GLQD 157



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 36/180 (20%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQK----NTVTYNSMISAYAKNGRVNDARKLFE 70
           V + N  I  L K+G  EEA++IF QM Q+    + VT+  ++SA +  GRV++ RK+F+
Sbjct: 781 VISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHAGRVSEGRKVFD 840

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
            M               ++N K++           P +     M+    R G L +A E 
Sbjct: 841 LM---------------VNNYKLQ-----------PRVDHLGCMVDILGRWGFLNEAEEF 874

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGN----YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
            + L  K D   W+ ++    K G+       A KL++  P  +  S   +LSG     E
Sbjct: 875 INKLGCKADPMLWSTLLGACRKHGDEVRGKRAANKLMELKPQSS--SSYVLLSGLYAESE 932


>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 702

 Score =  365 bits (937), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 207/607 (34%), Positives = 324/607 (53%), Gaps = 45/607 (7%)

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML 209
           Y + G  ++A  +   MP +N+ SW ++LS +  +G    A   FE ++           
Sbjct: 104 YGRFGCLDDANLVFVKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKLQ----------- 152

Query: 210 DGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYA--RNGRMLEARRLFDQMPIRN 263
                LDD+   +  F  + +      V+     L G    R   M  A ++F    ++N
Sbjct: 153 -----LDDIGLEFFVFPVVLKLCGGLRVLELGRQLHGVVIKRCADMGSALKIFSGFSVKN 207

Query: 264 VVAWNAMIAAYVQRGQIEEAARLF--IEMPERNPVSWTTMIDGYVRIAKLDEARRLL-DQ 320
           VV++N MI  Y + G +E+A  LF  +E+  ++ +SW +MI GY      DEA  +  D 
Sbjct: 208 VVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRDL 267

Query: 321 MPYKNIAAQT-------AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG-----YA 368
           +  + I A +       A  +     +R  E +      G H    WN  + G     Y+
Sbjct: 268 LMEEGIEADSFTLGSVLAACADMASLRRGKEVHAQAVVRGLH----WNTFVGGALVEMYS 323

Query: 369 QCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNA 425
           +C  +  A   F  +  +D  TWN +I+GYA   Q+++   + ++M   G   N  +WN 
Sbjct: 324 KCEDLKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNG 383

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485
           +ISG ++N  +  AL++F  M     + D  T+   L ACA LA +  G+Q+H  +I+ G
Sbjct: 384 IISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQG 443

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
           Y  D+ +G +L+ MYAKCG I++A  ++      +++S N+++  YA++G+  E I LF 
Sbjct: 444 YELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFR 503

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRA 605
            M+  G  PD VTF+ VLS+C H G V+ G + F+ MT  Y + P ++HY C++DLLSRA
Sbjct: 504 NMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMT-YYNVTPSLKHYTCIVDLLSRA 562

Query: 606 GRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLS 665
           GRLDEA+E+VK +  KP++ +WG LLG C +  N++LG IA E L ELEP  T  Y LL+
Sbjct: 563 GRLDEAYELVKKIPRKPDSVMWGALLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLA 622

Query: 666 NMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLK 725
           N++A AGRW ++++ R  ++  G  K PGCSWIE +  IH FLS D    +T +I  TL 
Sbjct: 623 NLYAYAGRWHDLDRTRQMIKDRGMHKSPGCSWIEDREDIHVFLSCDKSHEKTEDIYTTLD 682

Query: 726 TLAAQIR 732
            L   +R
Sbjct: 683 NLNTHMR 689



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 196/403 (48%), Gaps = 72/403 (17%)

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV- 357
           T ++  Y R   LD+A  +  +MP +N+ + TA++S +V +   +EA  +F+K+   D+ 
Sbjct: 98  TKLLQMYGRFGCLDDANLVFVKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDIG 157

Query: 358 -----------VC------------WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTM 394
                      +C              V+IK   +C  M  A+ +F     K++V++NTM
Sbjct: 158 LEFFVFPVVLKLCGGLRVLELGRQLHGVVIK---RCADMGSALKIFSGFSVKNVVSYNTM 214

Query: 395 IAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFV-LMTQEG 450
           I GY +   ++ A ++F++M   GK  +T+SWN++ISG+  N    +AL +F  L+ +EG
Sbjct: 215 IVGYCENGNVEKAKELFDQMELVGK--DTISWNSMISGYADNLLFDEALSMFRDLLMEEG 272

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
            +AD  TL   L+ACA +A+L+ G+++H  A+  G   + FVG +L+ MY+KC  ++ A+
Sbjct: 273 IEADSFTLGSVLAACADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQ 332

Query: 511 LLFKDADPVDVISWNSLIAGYAI-----------------------------------NG 535
           L F      D  +WN LI+GYA                                    NG
Sbjct: 333 LAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENG 392

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF-ECMTEVYAIEPLVEH 594
           +   A++LF EM    + PD  T   +L AC+ +  +  G ++    + + Y ++  V  
Sbjct: 393 HNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELD--VHI 450

Query: 595 YACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMH 637
            A ++D+ ++ G +  A ++   +   PN      +L A  MH
Sbjct: 451 GAALVDMYAKCGSIKHAMQVYNRIS-NPNLVSQNAMLTAYAMH 492



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 124/544 (22%), Positives = 231/544 (42%), Gaps = 106/544 (19%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL--- 108
           ++  Y + G ++DA  +F +MPQRNL SW ++++ ++ +   +EA  LF+K+   D+   
Sbjct: 100 LLQMYGRFGCLDDANLVFVKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDIGLE 159

Query: 109 -FSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP 167
            F + +++        LE  R+L  ++  +    C        A +G+   A K+     
Sbjct: 160 FFVFPVVLKLCGGLRVLELGRQLHGVVIKR----C--------ADMGS---ALKIFSGFS 204

Query: 168 SKNIVSWNSMLSGYTKNGEMHLASKFFEAME--ERDVVSWNLMLDGYVELDDLDSAWKFF 225
            KN+VS+N+M+ GY +NG +  A + F+ ME   +D +SWN M+ GY +    D A   F
Sbjct: 205 VKNVVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMF 264

Query: 226 QKI-----PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQ 276
           + +      E +  +  ++L+  A    +   + +  Q  +R    N     A++  Y +
Sbjct: 265 RDLLMEEGIEADSFTLGSVLAACADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSK 324

Query: 277 RGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP----YKNIAAQTAM 332
              ++ A   F  + ER+  +W  +I GY    +L+  + L+ +M       N+     +
Sbjct: 325 CEDLKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGI 384

Query: 333 ISGYVQNKRMDEANQIFDKIGTH------------------------------------- 355
           ISG+V+N   + A ++F ++ T                                      
Sbjct: 385 ISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGY 444

Query: 356 --DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEE 413
             DV     ++  YA+CG +  A+ ++ ++ N ++V+ N M+  YA     D+ + +F  
Sbjct: 445 ELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRN 504

Query: 414 MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQL 473
           M           L +GF                     + DH T    LS+C H  A++ 
Sbjct: 505 M-----------LGNGF---------------------RPDHVTFLSVLSSCVHAGAVET 532

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA-ELLFKDADPVDVISWNSLIAGYA 532
           G +   L         L     ++ + ++ GR+  A EL+ K     D + W +L+ G  
Sbjct: 533 GHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGCV 592

Query: 533 INGN 536
           I GN
Sbjct: 593 IWGN 596



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 176/398 (44%), Gaps = 68/398 (17%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP--QRNLVSWNSMIAGYLHND 91
           A+KIFS  S KN V+YN+MI  Y +NG V  A++LF+QM    ++ +SWNSMI+GY  N 
Sbjct: 196 ALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNL 255

Query: 92  KVKEARELFDKMFRPD----------------------------------------LFSW 111
              EA  +F  +   +                                         F  
Sbjct: 256 LFDEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRRGKEVHAQAVVRGLHWNTFVG 315

Query: 112 ALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK-- 169
             ++  Y++  +L+ A+  FD +  + DTA WN +++GYA        + L+  M     
Sbjct: 316 GALVEMYSKCEDLKAAQLAFDGVTER-DTATWNVLISGYACCNQLENIQNLIQKMKGDGF 374

Query: 170 --NIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWK 223
             N+ +WN ++SG+ +NG   LA + F  M+      D+ +  ++L     L  +    +
Sbjct: 375 EPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQ 434

Query: 224 F----FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ 279
                 ++  E +V     ++  YA+ G +  A ++++++   N+V+ NAM+ AY   G 
Sbjct: 435 VHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGH 494

Query: 280 IEEAARLFIEM------PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ---- 329
            +E   LF  M      P+   V++ +++   V    ++      D M Y N+       
Sbjct: 495 GDEGIALFRNMLGNGFRPDH--VTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHY 552

Query: 330 TAMISGYVQNKRMDEANQIFDKIGTH-DVVCWNVMIKG 366
           T ++    +  R+DEA ++  KI    D V W  ++ G
Sbjct: 553 TCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGG 590



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 72/137 (52%), Gaps = 8/137 (5%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL----VSWNS 82
           K G ++ A+++++++S  N V+ N+M++AYA +G  ++   LF  M         V++ S
Sbjct: 460 KCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLS 519

Query: 83  MIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           +++  +H   V+   E FD M      P L  +  ++   +R G L++A EL   +P K 
Sbjct: 520 VLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKP 579

Query: 139 DTACWNAMVAGYAKIGN 155
           D+  W A++ G    GN
Sbjct: 580 DSVMWGALLGGCVIWGN 596



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 22/184 (11%)

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
           K+ D ST A  L +C     L LG+Q+H   +K+G+    FV   L+ MY + G + +A 
Sbjct: 58  KQIDSSTYASLLESCR---TLNLGKQVHAHTLKTGFHGHEFVETKLLQMYGRFGCLDDAN 114

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
           L+F      ++ SW ++++ +  +G   EA+ LFE++ ++ +  +   F  VL  C    
Sbjct: 115 LVFVKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDIGLEFFVFPVVLKLC---- 170

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
              GGL++ E   +++ +            ++ R   +  A ++  G  +K        +
Sbjct: 171 ---GGLRVLELGRQLHGV------------VIKRCADMGSALKIFSGFSVKNVVSYNTMI 215

Query: 631 LGAC 634
           +G C
Sbjct: 216 VGYC 219


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  365 bits (937), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 239/813 (29%), Positives = 389/813 (47%), Gaps = 153/813 (18%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM-------- 103
           +I  Y   G +N A  +F++MP R+L  WN +   ++    +     LF +M        
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162

Query: 104 --------------------------------FRPDLFSWALMITCYTRKGELEKARELF 131
                                           F    F    +I  Y + G L  A+++F
Sbjct: 163 ERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVF 222

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL--------------------------DA 165
           + L  + D+  W AM++G ++ G   EA  L                             
Sbjct: 223 ENLKAR-DSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHGLVLKQG 281

Query: 166 MPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFF 225
             S+  V  N++++ Y+++G +  A + F  M +RD VS+N ++ G  +   ++ A   F
Sbjct: 282 FSSETYVC-NALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALF 340

Query: 226 QKI----PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-----NVVAWNAMIAAYVQ 276
           +K+     + + V+  ++LS  A  G +   ++ F    I+     ++V   +++  YV+
Sbjct: 341 KKMNLDCQKPDCVTVASLLSACASVGALPNGKQ-FHSYAIKAGMTSDIVVEGSLLDLYVK 399

Query: 277 RGQIEEAARLF--------------------IEMPERNPVSWTTMIDGYVRIAKLDEARR 316
              I+ A   F                    IE    N  ++ +++     +   D   +
Sbjct: 400 CSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQ 459

Query: 317 LLDQMPYK----NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGR 372
           +  Q+       N+   + +I  Y ++ ++D A +IF ++  +DVV W  MI GY Q  +
Sbjct: 460 IHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDK 519

Query: 373 MDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDA--------------------- 407
             EA+NLF++M    +  D + + + I+  A I+ +D                       
Sbjct: 520 FTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNA 579

Query: 408 -VKIFEEMGKRR------------NTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
            V ++   GK R            + VSWN+L+SGF Q+ +  +AL IF  M + G + +
Sbjct: 580 LVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEIN 639

Query: 455 HSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
             T   A+SA A++A +++G+QIH +  K+GY ++  V N+LIT+YAKCG I        
Sbjct: 640 SFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTI-------- 691

Query: 515 DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574
                D ISWNS+I GY+ +G   EA+KLFE+M    V P+ VTF+GVLSACSHVGLVD 
Sbjct: 692 -----DDISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDE 746

Query: 575 GLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGAC 634
           G+  F  M+E + + P  EHYAC++DLL R+G L  A   V+ M I+P+A +W TLL AC
Sbjct: 747 GISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSAC 806

Query: 635 RMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPG 694
            +H+NI +G  A   L ELEP+ ++ Y L+SNM+A +G+WD  ++ R  M+  G +K+PG
Sbjct: 807 NVHKNIDIGEFAASHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPG 866

Query: 695 CSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
            SW+EV N +H F +GD    R   I   L+ L
Sbjct: 867 RSWVEVDNSVHAFFAGDQNHPRADMIYEYLRGL 899



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 108/485 (22%), Positives = 203/485 (41%), Gaps = 100/485 (20%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           +  Q     T   N++++ Y+++G ++ A ++F  M QR+ VS+NS+I+G      +  A
Sbjct: 277 VLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRA 336

Query: 97  RELFDKMF----RPDLFSWALMITCYTRKGELEKARE-------------------LFDL 133
             LF KM     +PD  + A +++     G L   ++                   L DL
Sbjct: 337 LALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDL 396

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV----SWNSMLSGYTKNGEMHL 189
                D    +     Y ++ N N++ ++   M  + IV    ++ S+L   T  G   L
Sbjct: 397 YVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDL 456

Query: 190 A----SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR 245
                ++  +   + +V   ++++D Y +   LD A K F+++ E +VVSW  M++GY +
Sbjct: 457 GEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQ 516

Query: 246 NGRMLEARRLFDQMPIRNVVA--------------------------------------- 266
           + +  EA  LF +M  + + +                                       
Sbjct: 517 HDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSI 576

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
            NA+++ Y + G++ EA   F ++  ++ VSW +++ G+ +    +EA  +  QM    +
Sbjct: 577 GNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGL 636

Query: 327 -------------AAQTA------MISGYVQNKRMDEANQI-------FDKIGTHDVVCW 360
                        AA  A       I G ++    D   ++       + K GT D + W
Sbjct: 637 EINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDDISW 696

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
           N MI GY+Q G   EA+ LF  M   D+    VT+  +++  + +  +D+ +  F  M +
Sbjct: 697 NSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSE 756

Query: 417 RRNTV 421
             N V
Sbjct: 757 AHNLV 761



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 154/319 (48%), Gaps = 25/319 (7%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           I    K G+++ A+KIF ++ + + V++ +MI+ Y ++ +  +A  LF++M  + + S N
Sbjct: 480 IDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDN 539

Query: 82  ----SMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDL 133
               S I+       + + R++  +     +  DL     +++ Y R G++ +A   FD 
Sbjct: 540 IGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQ 599

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
           +  K D   WN++V+G+A+ G + EA  +   M +K  +  NS   G   +   ++A+  
Sbjct: 600 IYAK-DNVSWNSLVSGFAQSGYFEEALNIFAQM-NKAGLEINSFTFGSAVSAAANIAN-- 655

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAW-KFFQKIPEQNVVSWVTMLSGYARNGRMLEA 252
              +     +   +   GY    ++ +A    + K    + +SW +M++GY+++G   EA
Sbjct: 656 ---VRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDDISWNSMITGYSQHGCGFEA 712

Query: 253 RRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN-----PVSWTTMID 303
            +LF+ M     + N V +  +++A    G ++E    F  M E +     P  +  ++D
Sbjct: 713 LKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVD 772

Query: 304 GYVRIAKLDEARRLLDQMP 322
              R   L  A+R +++MP
Sbjct: 773 LLGRSGLLSRAKRFVEEMP 791


>gi|357519251|ref|XP_003629914.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523936|gb|AET04390.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  365 bits (937), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 201/575 (34%), Positives = 316/575 (54%), Gaps = 47/575 (8%)

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP--I 261
           S N     +++   LDSA   F KIP  +V  +  +L  YA N  + EA  LF+Q+P   
Sbjct: 59  SLNFTFLNHLKNQKLDSARAVFNKIPSPHVSLYTKLLLAYAHNNNLHEAINLFNQIPSNT 118

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           ++ ++WN++I A +       A +LF EMP+RN +SWTT+I G++   +++EA R  + M
Sbjct: 119 KDTISWNSVIKASIICNDFVTAVKLFDEMPQRNSISWTTIIHGFLSTGRVNEAERFFNAM 178

Query: 322 PY--KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
           PY  K++A   AM++GY  N R+++A ++F ++ + DV+ W  +I G  + G+  +A+  
Sbjct: 179 PYVDKDVATWNAMVNGYCNNGRVNDALRLFCQMPSRDVISWTSIIVGLDRNGKSYQALFF 238

Query: 380 FRQMVNKDIV--TWNTMIAG---------------------------------------- 397
           F+ MV    V  +  T++ G                                        
Sbjct: 239 FKNMVGFSGVGISSTTLVCGLSAAAKILDFYAGIQIHCCMFKFGFCCGLDEFVSASLVTF 298

Query: 398 YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHST 457
           YA  ++M DA K+F E    +N V W AL++G   N+ H++AL++F  M +     + S+
Sbjct: 299 YASCKRMGDACKVFGET-VCKNVVVWTALLTGCGLNDKHVEALEVFSEMMRFNVVPNESS 357

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD 517
              AL++C  L  L+ GR IH   IK G  N ++ GNSL+ MY+KCG I +A  +FK   
Sbjct: 358 FTSALNSCVGLEDLEKGRVIHAAGIKMGLENAVYTGNSLVVMYSKCGFIGDALCVFKGIC 417

Query: 518 PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLK 577
             +V+SWNS+I G A +G  T A+ LF+EM+ EGV  D +T  G+LSACS  G++     
Sbjct: 418 EKNVVSWNSVIVGCAQHGCGTWALVLFKEMLREGVESDEITLTGLLSACSRSGMLQKARC 477

Query: 578 LFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMH 637
            F       +++  VEHYACM+D+L R G ++EA  +   M ++ N+ +W  LL ACR+H
Sbjct: 478 FFGYFARKRSMKLTVEHYACMVDVLGRCGEVEEAEALATSMPVEANSMVWLVLLSACRVH 537

Query: 638 QNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSW 697
            ++ +   A +++ E+EP  ++ Y LLSN++A + RW EV ++R+ M+ +G  KQPG SW
Sbjct: 538 SSLDVAERAAKRIFEMEPDCSAAYVLLSNLYASSRRWLEVARIRMKMKHNGIVKQPGSSW 597

Query: 698 IEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           I +K   H FLS D     T EI   L  L  ++R
Sbjct: 598 ITLKGMRHEFLSADRSHPLTEEIYEKLVWLGVKLR 632



 Score =  168 bits (426), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 119/466 (25%), Positives = 223/466 (47%), Gaps = 26/466 (5%)

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
           Q P+ +  S N     +L N K+  AR +F+K+  P +  +  ++  Y     L +A  L
Sbjct: 51  QNPKSSSTSLNFTFLNHLKNQKLDSARAVFNKIPSPHVSLYTKLLLAYAHNNNLHEAINL 110

Query: 131 FDLLP-NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           F+ +P N +DT  WN+++       ++  A KL D MP +N +SW +++ G+   G ++ 
Sbjct: 111 FNQIPSNTKDTISWNSVIKASIICNDFVTAVKLFDEMPQRNSISWTTIIHGFLSTGRVNE 170

Query: 190 ASKFFEAME--ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
           A +FF AM   ++DV +WN M++GY     ++ A + F ++P ++V+SW +++ G  RNG
Sbjct: 171 AERFFNAMPYVDKDVATWNAMVNGYCNNGRVNDALRLFCQMPSRDVISWTSIIVGLDRNG 230

Query: 248 RMLEARRLFDQMPIRNVVAWN-----------AMIAAYVQRGQIEEAARLFIEMPERNPV 296
           +  +A   F  M   + V  +           A I  +    QI      F      +  
Sbjct: 231 KSYQALFFFKNMVGFSGVGISSTTLVCGLSAAAKILDFYAGIQIHCCMFKFGFCCGLDEF 290

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHD 356
              +++  Y    ++ +A ++  +   KN+   TA+++G   N +  EA ++F ++   +
Sbjct: 291 VSASLVTFYASCKRMGDACKVFGETVCKNVVVWTALLTGCGLNDKHVEALEVFSEMMRFN 350

Query: 357 VVC-WNVMIKGYAQC--------GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDA 407
           VV   +        C        GR+  A  + +  +   + T N+++  Y++   + DA
Sbjct: 351 VVPNESSFTSALNSCVGLEDLEKGRVIHAAGI-KMGLENAVYTGNSLVVMYSKCGFIGDA 409

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
           + +F+ + + +N VSWN++I G  Q+     AL +F  M +EG ++D  TL   LSAC+ 
Sbjct: 410 LCVFKGICE-KNVVSWNSVIVGCAQHGCGTWALVLFKEMLREGVESDEITLTGLLSACSR 468

Query: 468 LAALQLGRQIH-HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512
              LQ  R    + A K      +     ++ +  +CG ++ AE L
Sbjct: 469 SGMLQKARCFFGYFARKRSMKLTVEHYACMVDVLGRCGEVEEAEAL 514



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 168/397 (42%), Gaps = 88/397 (22%)

Query: 318 LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAI 377
           L Q P  +  +       +++N+++D A  +F+KI +  V  +  ++  YA    + EAI
Sbjct: 49  LIQNPKSSSTSLNFTFLNHLKNQKLDSARAVFNKIPSPHVSLYTKLLLAYAHNNNLHEAI 108

Query: 378 NLFRQMVN--KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR------------------ 417
           NLF Q+ +  KD ++WN++I           AVK+F+EM +R                  
Sbjct: 109 NLFNQIPSNTKDTISWNSVIKASIICNDFVTAVKLFDEMPQRNSISWTTIIHGFLSTGRV 168

Query: 418 --------------RNTVSWNALISGFLQNEFHLDALKIFVLMTQ--------------- 448
                         ++  +WNA+++G+  N    DAL++F  M                 
Sbjct: 169 NEAERFFNAMPYVDKDVATWNAMVNGYCNNGRVNDALRLFCQMPSRDVISWTSIIVGLDR 228

Query: 449 -----------------EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL- 490
                             G     +TL C LSA A +     G QIH    K G+   L 
Sbjct: 229 NGKSYQALFFFKNMVGFSGVGISSTTLVCGLSAAAKILDFYAGIQIHCCMFKFGFCCGLD 288

Query: 491 -FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549
            FV  SL+T YA C R+ +A  +F +    +V+ W +L+ G  +N    EA+++F EM+ 
Sbjct: 289 EFVSASLVTFYASCKRMGDACKVFGETVCKNVVVWTALLTGCGLNDKHVEALEVFSEMMR 348

Query: 550 EGVAPDPVTFIGVLSACSHVGLVD---------GGLKLFECMTEVYAIEPLVEHYACMID 600
             V P+  +F   L++C  VGL D          G+K+         +E  V     ++ 
Sbjct: 349 FNVVPNESSFTSALNSC--VGLEDLEKGRVIHAAGIKM--------GLENAVYTGNSLVV 398

Query: 601 LLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMH 637
           + S+ G + +A  + KG+  + N   W +++  C  H
Sbjct: 399 MYSKCGFIGDALCVFKGI-CEKNVVSWNSVIVGCAQH 434



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 112/419 (26%), Positives = 180/419 (42%), Gaps = 63/419 (15%)

Query: 27  KSGRVEEAIKIFSQMS--QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMI 84
            +GRV EA + F+ M    K+  T+N+M++ Y  NGRVNDA +LF QMP R+++SW S+I
Sbjct: 164 STGRVNEAERFFNAMPYVDKDVATWNAMVNGYCNNGRVNDALRLFCQMPSRDVISWTSII 223

Query: 85  AGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACW- 143
            G   N K  +A   F  M     FS  + I+  T    L  A ++ D     +   C  
Sbjct: 224 VGLDRNGKSYQALFFFKNMVG---FS-GVGISSTTLVCGLSAAAKILDFYAGIQIHCCMF 279

Query: 144 -------------NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
                         ++V  YA      +A K+      KN+V W ++L+G   N +   A
Sbjct: 280 KFGFCCGLDEFVSASLVTFYASCKRMGDACKVFGETVCKNVVVWTALLTGCGLNDKHVEA 339

Query: 191 SKFFEAMEERDVV----SWNLMLDGYVELDDLDSAWKFFQ---KIPEQNVV-SWVTMLSG 242
            + F  M   +VV    S+   L+  V L+DL+          K+  +N V +  +++  
Sbjct: 340 LEVFSEMMRFNVVPNESSFTSALNSCVGLEDLEKGRVIHAAGIKMGLENAVYTGNSLVVM 399

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSW 298
           Y++ G + +A  +F  +  +NVV+WN++I    Q G    A  LF EM     E + ++ 
Sbjct: 400 YSKCGFIGDALCVFKGICEKNVVSWNSVIVGCAQHGCGTWALVLFKEMLREGVESDEITL 459

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV 358
           T ++    R   L +AR                   GY   KR         K+      
Sbjct: 460 TGLLSACSRSGMLQKARCFF----------------GYFARKRS-------MKLTVEHYA 496

Query: 359 CWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAGYAQIRQMD----DAVKIFE 412
           C   M+    +CG ++EA  L   M V  + + W  +++       +D     A +IFE
Sbjct: 497 C---MVDVLGRCGEVEEAEALATSMPVEANSMVWLVLLSACRVHSSLDVAERAAKRIFE 552



 Score = 79.3 bits (194), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 163/417 (39%), Gaps = 82/417 (19%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----P 106
           S+++ YA   R+ DA K+F +   +N+V W +++ G   NDK  EA E+F +M R    P
Sbjct: 294 SLVTFYASCKRMGDACKVFGETVCKNVVVWTALLTGCGLNDKHVEALEVFSEMMRFNVVP 353

Query: 107 DLFSWALMITCYTRKGELEKARELFDL-----LPNKEDTACWNAMVAGYAKIGNYNEAKK 161
           +  S+   +       +LEK R +        L N   T   N++V  Y+K G   +A  
Sbjct: 354 NESSFTSALNSCVGLEDLEKGRVIHAAGIKMGLENAVYTG--NSLVVMYSKCGFIGDALC 411

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDD---- 217
           +   +  KN+VSWNS++ G  ++G    A   F+ M    V S  + L G +        
Sbjct: 412 VFKGICEKNVVSWNSVIVGCAQHGCGTWALVLFKEMLREGVESDEITLTGLLSACSRSGM 471

Query: 218 LDSAWKFFQKIPEQ-----NVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMI 271
           L  A  FF     +      V  +  M+    R G + EA  L   MP+  N + W  ++
Sbjct: 472 LQKARCFFGYFARKRSMKLTVEHYACMVDVLGRCGEVEEAEALATSMPVEANSMVWLVLL 531

Query: 272 AAYVQRGQI---EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA 328
           +A      +   E AA+   EM      ++  + + Y    +  E  R+  +M +  I  
Sbjct: 532 SACRVHSSLDVAERAAKRIFEMEPDCSAAYVLLSNLYASSRRWLEVARIRMKMKHNGIVK 591

Query: 329 QTAMISGYVQNKRMDE-----------ANQIFDKI------------------GTHDV-- 357
           Q    S ++  K M               +I++K+                    HDV  
Sbjct: 592 QPG--SSWITLKGMRHEFLSADRSHPLTEEIYEKLVWLGVKLRELGYIPDQQFALHDVEI 649

Query: 358 ---------------VCWNVM----------IKGYAQCGRMDEAINLFRQMVNKDIV 389
                          + + ++          +K    CG    AI L  ++VN++IV
Sbjct: 650 EQNEEMLSYHSERLAIAFGLLSTVEGSTITIMKNLRVCGDCHTAITLMAKIVNREIV 706


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 191/565 (33%), Positives = 321/565 (56%), Gaps = 25/565 (4%)

Query: 183 KNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVT 238
           ++G+M  A + F+A+ +  +  WN M+ GY  ++   +    +  +   N+     ++  
Sbjct: 53  ESGKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPF 112

Query: 239 MLSGYARN-----GRML---EARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
           +L G+ RN     G++L     +  FD     N+    A I  +     ++ A ++F   
Sbjct: 113 LLKGFTRNMALQYGKVLLNHAVKHGFDS----NLFVQKAFIHMFSLCRLVDLARKVFDMG 168

Query: 291 PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA----MISGYVQNKRMDEAN 346
                V+W  M+ GY R+ +  +++ L  +M  + ++  +     M+S   + K ++   
Sbjct: 169 DAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGK 228

Query: 347 QIFDKIG----THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIR 402
            I+  I       +++  NV+I  +A CG MDEA ++F  M N+D+++W +++ G+A I 
Sbjct: 229 HIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIG 288

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
           Q+D A K F+++   R+ VSW A+I G+L+    ++AL +F  M     K D  T+   L
Sbjct: 289 QIDLARKYFDQI-PERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSIL 347

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
           +ACAHL AL+LG  +     K+   ND FVGN+LI MY KCG +  A+ +FK+    D  
Sbjct: 348 TACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKF 407

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           +W ++I G AING+  EA+ +F  M+   + PD +T+IGVL AC+H G+V+ G   F  M
Sbjct: 408 TWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISM 467

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKL 642
           T  + I+P V HY CM+DLL RAGRL+EA E++  M +KPN+ +WG+LLGACR+H+N++L
Sbjct: 468 TMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQL 527

Query: 643 GRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKN 702
             +A +++ ELEP+  + Y LL N++A   RW+ + +VR  M   G +K PGCS +E+  
Sbjct: 528 AEMAAKQILELEPENGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNG 587

Query: 703 QIHTFLSGDPKQCRTAEICNTLKTL 727
            ++ F++GD    ++ EI   L+ +
Sbjct: 588 NVYEFVAGDQSHPQSKEIYAKLENM 612



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 126/508 (24%), Positives = 235/508 (46%), Gaps = 57/508 (11%)

Query: 58  KNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWAL 113
           ++G++  AR++F+ +PQ  L  WN+MI GY   +  +    ++  M     +PD F++  
Sbjct: 53  ESGKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPF 112

Query: 114 MITCYTRKGELEKARELFD-LLPNKEDTACW--NAMVAGYAKIGNYNEAKKLLDAMPSKN 170
           ++  +TR   L+  + L +  + +  D+  +   A +  ++     + A+K+ D   +  
Sbjct: 113 LLKGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWE 172

Query: 171 IVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQ 226
           +V+WN MLSGY +  +   +   F  ME+R V    V+  LML    +L DL+     ++
Sbjct: 173 VVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYK 232

Query: 227 ----KIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEE 282
                I E+N++    ++  +A  G M EA+ +FD M  R+V++W +++  +   GQI+ 
Sbjct: 233 YINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDL 292

Query: 283 AARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRM 342
           A + F ++PER+ VSWT MIDGY+R+ +  EA  L  +M   N+      +   +     
Sbjct: 293 ARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAH 352

Query: 343 DEANQIFDKIGTH--------DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTM 394
             A ++ + + T+        D    N +I  Y +CG + +A  +F++M +KD  TW  M
Sbjct: 353 LGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAM 412

Query: 395 IAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
           I G A                           I+G  +     +AL +F  M +     D
Sbjct: 413 IVGLA---------------------------INGHGE-----EALAMFSNMIEASITPD 440

Query: 455 HSTLACALSACAHLAALQLGRQIH-HLAIKSGYVNDLFVGNSLITMYAKCGRIQNA-ELL 512
             T    L AC H   ++ G+     + ++ G   ++     ++ +  + GR++ A E++
Sbjct: 441 EITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVI 500

Query: 513 FKDADPVDVISWNSLIAGYAINGNATEA 540
                  + I W SL+    ++ N   A
Sbjct: 501 VNMPVKPNSIVWGSLLGACRVHKNVQLA 528



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 120/516 (23%), Positives = 235/516 (45%), Gaps = 41/516 (7%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL----VSWNS 82
           +SG++  A ++F  + Q     +N+MI  Y++     +   ++  M   N+     ++  
Sbjct: 53  ESGKMIYARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPF 112

Query: 83  MIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           ++ G+  N  ++  + L +      F  +LF     I  ++    ++ AR++FD + +  
Sbjct: 113 LLKGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFD-MGDAW 171

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMP----SKNIVSWNSMLSGYTK----NGEMHLA 190
           +   WN M++GY ++  + ++K L   M     S N V+   MLS  +K     G  H+ 
Sbjct: 172 EVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIY 231

Query: 191 SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRML 250
                 + ER+++  N+++D +    ++D A   F  +  ++V+SW ++++G+A  G++ 
Sbjct: 232 KYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQID 291

Query: 251 EARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWT--TMIDGYV 306
            AR+ FDQ+P R+ V+W AMI  Y++  +  EA  LF EM   N  P  +T  +++    
Sbjct: 292 LARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACA 351

Query: 307 RIAKLDEA---RRLLDQMPYKN-IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNV 362
            +  L+     +  +D+   KN      A+I  Y +   + +A ++F ++   D   W  
Sbjct: 352 HLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTA 411

Query: 363 MIKGYAQCGRMDEAINLFRQMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEM---- 414
           MI G A  G  +EA+ +F  M+   I    +T+  ++        ++     F  M    
Sbjct: 412 MIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQH 471

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL--ACALSACAHLAALQ 472
           G + N   +  ++    +     +A ++ V M  +       +L  AC +     LA + 
Sbjct: 472 GIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMA 531

Query: 473 LGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
             +QI  L  ++G V  L     L  +YA C R +N
Sbjct: 532 -AKQILELEPENGAVYVL-----LCNIYAACKRWEN 561



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 154/324 (47%), Gaps = 23/324 (7%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           +N  I      G ++EA  +F  M  ++ +++ S+++ +A  G+++ ARK F+Q+P+R+ 
Sbjct: 246 ENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDY 305

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKA---REL 130
           VSW +MI GYL  ++  EA  LF +M     +PD F+   ++T     G LE     +  
Sbjct: 306 VSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTY 365

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE---- 186
            D    K DT   NA++  Y K GN  +AKK+   M  K+  +W +M+ G   NG     
Sbjct: 366 IDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEA 425

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ-----NVVSWVTMLS 241
           + + S   EA    D +++  +L        ++    FF  +  Q     NV  +  M+ 
Sbjct: 426 LAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVD 485

Query: 242 GYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVS 297
              R GR+ EA  +   MP++ N + W +++ A      +   E AA+  +E+   N   
Sbjct: 486 LLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAV 545

Query: 298 WTTMIDGYV---RIAKLDEARRLL 318
           +  + + Y    R   L + R+L+
Sbjct: 546 YVLLCNIYAACKRWENLRQVRKLM 569



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 85/368 (23%), Positives = 153/368 (41%), Gaps = 57/368 (15%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F Q   I        V+ A K+F        VT+N M+S Y +  +   ++ LF +M
Sbjct: 140 SNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEM 199

Query: 73  P---------------------------------------QRNLVSWNSMIAGYLHNDKV 93
                                                   +RNL+  N +I  +    ++
Sbjct: 200 EKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEM 259

Query: 94  KEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKI 153
            EA+ +FD M   D+ SW  ++T +   G+++ AR+ FD +P + D   W AM+ GY ++
Sbjct: 260 DEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPER-DYVSWTAMIDGYLRM 318

Query: 154 GNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSW 205
             + EA  L   M   N+     +  S+L+     G + L       ++    + D    
Sbjct: 319 NRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVG 378

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV- 264
           N ++D Y +  ++  A K F+++  ++  +W  M+ G A NG   EA  +F  M   ++ 
Sbjct: 379 NALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASIT 438

Query: 265 ---VAWNAMIAAYVQRGQIEEAARLFIEMP-----ERNPVSWTTMIDGYVRIAKLDEARR 316
              + +  ++ A    G +E+    FI M      + N   +  M+D   R  +L+EA  
Sbjct: 439 PDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHE 498

Query: 317 LLDQMPYK 324
           ++  MP K
Sbjct: 499 VIVNMPVK 506



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 13/170 (7%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F  N  I    K G V +A K+F +M  K+  T+ +MI   A NG   +A  +F  M + 
Sbjct: 376 FVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEA 435

Query: 76  NL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEK 126
           ++    +++  ++    H   V++ +  F  M      +P++  +  M+    R G LE+
Sbjct: 436 SITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEE 495

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYN----EAKKLLDAMPSKNIV 172
           A E+   +P K ++  W +++       N       AK++L+  P    V
Sbjct: 496 AHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAV 545


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 217/645 (33%), Positives = 348/645 (53%), Gaps = 58/645 (8%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF-----EAME 198
           N ++  ++  GN  EA++  D++ +K +V+WN++++GY + G +  A   F     EAME
Sbjct: 100 NTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAME 159

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS----WVTMLSGYARNGRMLEARR 254
              ++++ ++LD       L    +F  ++ +   VS       ++S Y + G M  AR+
Sbjct: 160 P-SIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQ 218

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAK 310
           +FD +  R+V  +N MI  Y + G  E+A +LF  M +     N +S+ +++DG      
Sbjct: 219 VFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEA 278

Query: 311 LDEAR----RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG 366
           L   +    + ++     ++   TA+I  Y+    ++ A ++FDK+   DVV W VMI+G
Sbjct: 279 LAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRG 338

Query: 367 YAQCGRMDEAINLFRQM----VNKDIVTWNTMI---------------------AG---- 397
           YA+   +++A  LF  M    +  D +T+  +I                     AG    
Sbjct: 339 YAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTD 398

Query: 398 ----------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMT 447
                     YA+   + DA ++F+ M  RR+ VSW+A+I  +++N    +A + F LM 
Sbjct: 399 LLVDTALVHMYAKCGAIKDARQVFDAM-SRRDVVSWSAMIGAYVENGCGEEAFETFHLMK 457

Query: 448 QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
           +   + D  T    L+AC HL AL LG +I+  AIK+  V+ + VGN+LI M  K G I+
Sbjct: 458 RNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIE 517

Query: 508 NAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
            A  +F++    DV++WN +I GY+++GNA EA+ LF+ M+ E   P+ VTF+GVLSACS
Sbjct: 518 RARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACS 577

Query: 568 HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIW 627
             G V+ G + F  + +   I P +E Y CM+DLL RAG LDEA  ++  M +KPN+ IW
Sbjct: 578 RAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIW 637

Query: 628 GTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGS 687
            TLL ACR++ N+ +   A E+    EP   + Y  LS+M+A AG W+ V KVR  ME  
Sbjct: 638 STLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESR 697

Query: 688 GAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           G +K+ GC+WIEV+ ++HTF+  D    +  EI   L  L   I+
Sbjct: 698 GVRKEQGCTWIEVEGKLHTFVVEDRSHPQAGEIYAELARLMTAIK 742



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 144/578 (24%), Positives = 262/578 (45%), Gaps = 67/578 (11%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           I     Q N    N++I  ++  G + +AR+ F+ +  + +V+WN++IAGY     VKEA
Sbjct: 87  IIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEA 146

Query: 97  ----RELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAG 149
               R++ D+   P + ++ +++   +    L+  +E    +       D     A+V+ 
Sbjct: 147 FALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSM 206

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSW 205
           Y K G+ + A+++ D +  +++ ++N M+ GY K+G+   A + F  M++     + +S+
Sbjct: 207 YVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISF 266

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPI 261
             +LDG    + L        +     +V  V     ++  Y   G +  ARR+FD+M +
Sbjct: 267 LSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKV 326

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRL 317
           R+VV+W  MI  Y +   IE+A  LF  M E     + +++  +I+     A L  AR +
Sbjct: 327 RDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREI 386

Query: 318 LDQMPY----KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRM 373
             Q+       ++   TA++  Y +   + +A Q+FD +   DVV W+ MI  Y + G  
Sbjct: 387 HSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCG 446

Query: 374 DEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMD-------DAVK------------- 409
           +EA   F  M    V  D+VT+  ++     +  +D        A+K             
Sbjct: 447 EEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNAL 506

Query: 410 ---------------IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
                          IFE M  +R+ V+WN +I G+  +    +AL +F  M +E  + +
Sbjct: 507 INMNVKHGSIERARYIFENM-VQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPN 565

Query: 455 HSTLACALSACAHLAALQLGRQ-IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
             T    LSAC+    ++ GR+   +L    G V  + +   ++ +  + G +  AELL 
Sbjct: 566 SVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLI 625

Query: 514 K--DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549
                 P   I W++L+A   I GN   A +  E  +M
Sbjct: 626 NRMPLKPNSSI-WSTLLAACRIYGNLDVAERAAERCLM 662



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 141/596 (23%), Positives = 261/596 (43%), Gaps = 107/596 (17%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP- 73
           ++  N  I      G + EA + F  +  K  VT+N++I+ YA+ G V +A  LF QM  
Sbjct: 96  IYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVD 155

Query: 74  ---QRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEK 126
              + +++++  ++        +K  +E   ++    F  D      +++ Y + G ++ 
Sbjct: 156 EAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDG 215

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSMLSG-- 180
           AR++FD L  K D + +N M+ GYAK G+  +A +L   M  +    N +S+ S+L G  
Sbjct: 216 ARQVFDGL-YKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCS 274

Query: 181 ---------------------------------YTKNGEMHLASKFFEAMEERDVVSWNL 207
                                            Y   G +  A + F+ M+ RDVVSW +
Sbjct: 275 TPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTV 334

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSG--------------------- 242
           M+ GY E  +++ A+  F  + E+ +    ++++ +++                      
Sbjct: 335 MIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAG 394

Query: 243 --------------YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFI 288
                         YA+ G + +AR++FD M  R+VV+W+AMI AYV+ G  EEA   F 
Sbjct: 395 FGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFH 454

Query: 289 EMPERN----PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNK 340
            M   N     V++  +++    +  LD    +  Q    ++ +      A+I+  V++ 
Sbjct: 455 LMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHG 514

Query: 341 RMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVTWNTMIA 396
            ++ A  IF+ +   DVV WNVMI GY+  G   EA++LF +M+ +    + VT+  +++
Sbjct: 515 SIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLS 574

Query: 397 GYAQIRQMDDAVKIFEEMGKRRN---TVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA 453
             ++   +++  + F  +   R    T+     +   L     LD  ++  L+ +   K 
Sbjct: 575 ACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAEL--LINRMPLKP 632

Query: 454 DHSTLACALSACAHLAALQLG-RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
           + S  +  L+AC     L +  R      +   Y   ++V   L  MYA  G  +N
Sbjct: 633 NSSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAVYV--QLSHMYAAAGMWEN 686



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 66/125 (52%), Gaps = 4/125 (3%)

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
           D  T       C  L    LG+Q+    I+SG   +++  N+LI +++ CG +  A   F
Sbjct: 60  DSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTF 119

Query: 514 KDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVD 573
              +   V++WN++IAGYA  G+  EA  LF +MV E + P  +TF+ VL ACS      
Sbjct: 120 DSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSS----P 175

Query: 574 GGLKL 578
            GLKL
Sbjct: 176 AGLKL 180



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 15/170 (8%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
           +KA L S    G+ + N N K       G +E A  IF  M Q++ VT+N MI  Y+ +G
Sbjct: 492 IKADLVSHIPVGNALINMNVK------HGSIERARYIFENMVQRDVVTWNVMIGGYSLHG 545

Query: 61  RVNDARKLFEQMPQR----NLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSW 111
              +A  LF++M +     N V++  +++       V+E R  F  +       P +  +
Sbjct: 546 NAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELY 605

Query: 112 ALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKK 161
             M+    R GEL++A  L + +P K +++ W+ ++A     GN + A++
Sbjct: 606 GCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAER 655


>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
          Length = 708

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 210/616 (34%), Positives = 337/616 (54%), Gaps = 30/616 (4%)

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSK---NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV 202
           +V+ YA  G  ++A+++ +  P +   N++ WNS+L     +G    A + +  M +  V
Sbjct: 72  VVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGV 131

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQ--------NVVSWVTMLSGYARNGRMLEARR 254
            +        +    L  + K  + +           N+     ++  Y + GRM +AR+
Sbjct: 132 SADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARK 191

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAK 310
           +F++M +R+ V+WN M++ Y        A+ +F  M     E N V+WT+++  + R  +
Sbjct: 192 VFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQ 251

Query: 311 LDEARRLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFDKI--GTHD--VVCWNV 362
             E   L  +M  + I A       ++S  V     DE   I   +  G  +  +   N 
Sbjct: 252 HVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNS 311

Query: 363 MIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK------ 416
           +I  Y + G ++ A  LF ++  K+IV+WN +I+ YA +   D+A  IF ++ K      
Sbjct: 312 LICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPM 371

Query: 417 -RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
            R N VSW+A+I GF       +AL++F  M     KA+  T+A  LS CA LAAL LGR
Sbjct: 372 VRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGR 431

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
           +IH   ++S    ++ VGN LI MY K G  +   L+F+  +  D+ISWN+++AGY I+G
Sbjct: 432 EIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHG 491

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHY 595
               AI+ F++M+ +G  PD VTF+ VLSACSH GLV  G +LF+ M + + +EP +EHY
Sbjct: 492 LGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHY 551

Query: 596 ACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEP 655
           ACM+DLL RAG L EA ++VK M ++PNA +WG LL +CRMH+N ++      ++  L  
Sbjct: 552 ACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNS 611

Query: 656 QKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQC 715
           +    Y LLSN++A +GRW++  KVR+S +  G +K PG SWI+VK +++ F +G+ +  
Sbjct: 612 EIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHA 671

Query: 716 RTAEICNTLKTLAAQI 731
              E+   LK L  Q+
Sbjct: 672 ELEEVYRILKDLGLQM 687



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 136/567 (23%), Positives = 241/567 (42%), Gaps = 109/567 (19%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR---NLVSWNSMIAGYLHNDK 92
           +I    S ++      ++S YA  G V+DA+++FE  P     NL+ WNS++   + +  
Sbjct: 56  QIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGY 115

Query: 93  VKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVA 148
            +EA E++ +M +     D F++ L+I      G  +  R +   +   E    WN  V 
Sbjct: 116 CEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVV--EMGFQWNLHVG 173

Query: 149 G-----YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----E 199
                 Y KIG  ++A+K+ + M  ++ VSWN+M+SGY  N + H AS+ F  M     E
Sbjct: 174 NELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLE 233

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKI-------------------------PEQNVV 234
            ++V+W  +L  +          + F ++                          E  V+
Sbjct: 234 PNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVI 293

Query: 235 SWVTMLSG--------------YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQI 280
               +  G              Y ++G +  AR LF ++  +N+V+WNA+I++Y   G  
Sbjct: 294 HGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWC 353

Query: 281 EEAARLFIE--------MPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAM 332
           +EA  +F++        M   N VSW+ +I G+    + +EA  L  +M    + A +  
Sbjct: 354 DEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVT 413

Query: 333 ISGYVQNKRMDEANQIFDKIGTH--------DVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
           I+  +       A  +  +I  H        +++  N +I  Y + G   E   +F ++ 
Sbjct: 414 IASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIE 473

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
           NKD+++WNTM+AGY                            I G  +N     A++ F 
Sbjct: 474 NKDLISWNTMVAGYG---------------------------IHGLGEN-----AIRTFD 501

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS-LITMYAKC 503
            M ++G + D  T    LSAC+H   +  GR++    IK   V       + ++ +  + 
Sbjct: 502 QMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRA 561

Query: 504 GRIQNAELLFKDADPVD--VISWNSLI 528
           G +Q A  + K   PV+     W +L+
Sbjct: 562 GLLQEASKVVKSM-PVEPNACVWGALL 587



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 112/253 (44%), Gaps = 24/253 (9%)

Query: 472 QLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS----WNSL 527
            L +QIH   I +G     F+   ++++YA  G + +A+ +F +  P++  S    WNS+
Sbjct: 48  HLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVF-EVSPIECFSNLLLWNSI 106

Query: 528 IAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG------LVDGGLKLFEC 581
           +     +G   EA++++  M   GV+ D  TF  V+ AC+ +G       V G +     
Sbjct: 107 LRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGF 166

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIK 641
              ++    L+  Y        + GR+D+A ++ + M ++     W T++    ++ +  
Sbjct: 167 QWNLHVGNELMGMYG-------KIGRMDDARKVFERMAVRSCVS-WNTMVSGYALNYDCH 218

Query: 642 LGRIAVEKLSE--LEPQKTSCYALLSNMHAEAGRWDEVEKV--RVSMEGSGAQKQPGCSW 697
                   +    LEP   +  +LLS+ HA  G+  E  ++  R+ M G GA  +     
Sbjct: 219 GASEMFRMMGSAGLEPNLVTWTSLLSS-HARCGQHVETMELFGRMRMRGIGATAEALAVV 277

Query: 698 IEVKNQIHTFLSG 710
           + V   +  F  G
Sbjct: 278 LSVSVDLAAFDEG 290


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  365 bits (936), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 226/723 (31%), Positives = 384/723 (53%), Gaps = 38/723 (5%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMP----QRNLVSWNSMIAGYLHNDKVKEARE 98
           Q + VT+ +++ + +  G V + R L E++     +R+ +  N++I+ Y   D + +AR 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 99  LFDKM--FRPDLFSWALMITCYTRKGELEKARELF---DLLPNKEDTACWNAMVAGYAKI 153
           +F+ M   + ++ SW  MI  Y + G   +A  L+   +L     D   + +++   + +
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 154 GNYNEAKKL-----LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLM 208
               E         LD+  S      N++++ Y + G +  A + F++++ RD  SWN +
Sbjct: 124 AQGREIHNRVFYSGLDSFQSLA----NALVTMYARFGSVGDAKRMFQSLQTRDETSWNAV 179

Query: 209 LDGYVELDDLDSAWKFFQKIP---EQNVVSWVTMLSGYARNGRMLEARRLFDQMPI---- 261
           +  + +  D   A + F+++    + N  +++ ++SG++    + E R++  ++      
Sbjct: 180 ILAHSQSGDWSGALRIFKEMKCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFD 239

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL---L 318
            ++V   A+I  Y + G   EA  +F +M +R+ VSW  MI  YV+     EA  L   L
Sbjct: 240 SDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKL 299

Query: 319 DQMPYKNIAAQTAMISGYVQN-KRMDEA----NQIFDKIGTHDVVCWNVMIKGYAQCGRM 373
           D   +K   A    I G   + K + +     + I ++    +V     ++  YA+CG +
Sbjct: 300 DMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSL 359

Query: 374 DEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVK---IFEEMGKRRNTVSWNALISGF 430
           +EA  +F  M N+D V W+T+I  YA      DA K   +F+ +G R +T+ WNA+I+ +
Sbjct: 360 EEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSR-DTICWNAMITTY 418

Query: 431 LQNEFHLDALKIFVLMT-QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND 489
           +QN   + A+KIF  MT   G K D  T    L ACA L  L   + +H    +S   ++
Sbjct: 419 VQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESN 478

Query: 490 LFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549
           + V N+LI MYA+CG ++ AE LF  A    V+SW +++A ++  G   EA+ LF+EM +
Sbjct: 479 VVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDL 538

Query: 550 EGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLD 609
           EGV PD VT+  +L  C+H G ++ G + F  M E++ + P  +H+A M+DLL R+GRL 
Sbjct: 539 EGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLF 598

Query: 610 EAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHA 669
           +A E+++ M  +P+   W T L ACR+H  ++LG  A E++ EL+P  T+ Y  +SN++A
Sbjct: 599 DAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYA 658

Query: 670 EAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAA 729
             G W++V  VR  ME  G +K PG S+IEV  ++H F SG     RT EIC  L  L  
Sbjct: 659 AHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHG 718

Query: 730 QIR 732
            +R
Sbjct: 719 LMR 721



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 150/308 (48%), Gaps = 24/308 (7%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND---ARKLFEQMPQRNLV 78
           +    K G +EEA K+F+ M  ++ V ++++I AYA NG   D   ARK+F+++  R+ +
Sbjct: 350 VNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTI 409

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFDL 133
            WN+MI  Y+ N     A ++F +M      +PD  ++  ++      G L + + L   
Sbjct: 410 CWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQ 469

Query: 134 LPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           +   E   +    N ++  YA+ G+  EA++L  A   K +VSW +M++ +++ G    A
Sbjct: 470 ISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEA 529

Query: 191 SKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLS 241
              F+ M+    + D V++  +L        L+  W++F  + E + ++     +  M+ 
Sbjct: 530 LDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVD 589

Query: 242 GYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVS 297
              R+GR+ +A+ L + MP   + VAW   + A    G++   E AA    E+   +   
Sbjct: 590 LLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAP 649

Query: 298 WTTMIDGY 305
           +  M + Y
Sbjct: 650 YIAMSNIY 657



 Score = 62.4 bits (150), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 112/251 (44%), Gaps = 24/251 (9%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V   N  I    + G +EEA ++F+   +K  V++ +M++A+++ GR  +A  LF++M
Sbjct: 477 SNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEM 536

Query: 73  PQRNL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGE 123
               +    V++ S++    H   +++    F  M       P    +A M+    R G 
Sbjct: 537 DLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGR 596

Query: 124 LEKARELFDLLPNKEDTACWNAM-----VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSML 178
           L  A+EL + +P + D   W        + G  ++G    A+++ +  PS +   + +M 
Sbjct: 597 LFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGE-AAAERVYELDPS-STAPYIAMS 654

Query: 179 SGYTKNGEMHLASKFFEAMEERDVVSWN----LMLDGYVELDDLDSAWKFFQKIPEQNVV 234
           + Y  +G     +   + MEER +        + +DG  +L +  S  K+  +  E  + 
Sbjct: 655 NIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDG--KLHEFSSGGKYHPRTDE--IC 710

Query: 235 SWVTMLSGYAR 245
             +T L G  R
Sbjct: 711 EELTRLHGLMR 721


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  364 bits (935), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 189/502 (37%), Positives = 299/502 (59%), Gaps = 10/502 (1%)

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW 298
           +++ YA+ G+ +EAR++FD+M  RN+ +WN M++ Y + G I+ A +LF +MPE++ VSW
Sbjct: 101 LINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSW 160

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGY----VQNKRMDEANQIFDKIGT 354
            TM+  + +    DEA R   +     I       +G     V+ K +    Q+  +I  
Sbjct: 161 NTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILV 220

Query: 355 ----HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKI 410
                +VV  + ++  Y +CG M +A  LF +M  +D++ W TM++GYA+   M  A ++
Sbjct: 221 AGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANEL 280

Query: 411 FEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAA 470
           F EM ++ N VSW ALISG+ +N     AL++F  M     + D  T +  L ACA +A+
Sbjct: 281 FVEMPEK-NPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIAS 339

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK-DADPVDVISWNSLIA 529
           L+ G+QIH   ++  +  +  V ++LI MY+KCG +     +F    + +DV+ WN++I+
Sbjct: 340 LKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIIS 399

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE 589
             A +G   EAI++ ++MV  G  PD +TF+ +L+ACSH GLV  GL  FE M+  Y I 
Sbjct: 400 ALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIV 459

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649
           P  EHYAC+IDLL RAG  +E  + ++ M  KP+  +W  LLG CR+H +I+LGR A E+
Sbjct: 460 PSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGVCRIHGHIELGRKAAER 519

Query: 650 LSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLS 709
           L ELEPQ ++ Y LLS+++A  GRW+ V+KVR  M     +K+   SW+E++N++H+F  
Sbjct: 520 LIELEPQSSTAYVLLSSIYAVLGRWESVQKVRQLMNERQVKKERAISWLEIENKVHSFSV 579

Query: 710 GDPKQCRTAEICNTLKTLAAQI 731
            D       +I + L+ LA Q+
Sbjct: 580 SDSSHPLKEQIYSVLEQLAGQM 601



 Score =  168 bits (426), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 124/462 (26%), Positives = 202/462 (43%), Gaps = 96/462 (20%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N ++  YAK G   EA+K+ D M ++N+ SWN+MLSGY K G +  A K F+ M E+DVV
Sbjct: 99  NHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVV 158

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPE--------------------------------- 230
           SWN M+  + +    D A +F+ +  +                                 
Sbjct: 159 SWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQI 218

Query: 231 ------QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA 284
                  NVV   ++L  Y + G M +AR+LFD+M  R+V+AW  M++ Y + G ++ A 
Sbjct: 219 LVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSAN 278

Query: 285 RLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL----------DQMPYKNIAAQTAMIS 334
            LF+EMPE+NPVSWT +I GY R     +A  L           DQ  + +     A I+
Sbjct: 279 ELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIA 338

Query: 335 GYVQNKRMDEANQIFDKIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNK-DIVTWN 392
                K++   +    +I    + +  + +I  Y++CG +     +F  M NK D+V WN
Sbjct: 339 SLKHGKQI---HAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWN 395

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
           T+I+  AQ    ++A+++ ++                                M + G K
Sbjct: 396 TIISALAQHGCGEEAIQMLDD--------------------------------MVRSGAK 423

Query: 453 ADHSTLACALSACAHLAALQLGRQ-IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA-- 509
            D  T    L+AC+H   +Q G      ++   G V        LI +  + G  +    
Sbjct: 424 PDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMD 483

Query: 510 ---ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
              ++ +K  D V    WN+L+    I+G+     K  E ++
Sbjct: 484 QLEKMPYKPDDRV----WNALLGVCRIHGHIELGRKAAERLI 521



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 124/431 (28%), Positives = 207/431 (48%), Gaps = 32/431 (7%)

Query: 25  LGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMI 84
           L +  RV   +K+ + + +  T   N +I+ YAK G+  +ARK+F++M  RNL SWN+M+
Sbjct: 75  LREGKRVHLHLKL-TGLKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNML 133

Query: 85  AGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWN 144
           +GY     +K AR+LFDKM   D+ SW  M+  + + G  ++A   +     +    C  
Sbjct: 134 SGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEF-RQLGIQCNG 192

Query: 145 AMVAG-------YAKIGNYNEAK-KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEA 196
              AG         ++G   +   ++L A    N+V  +S+L  Y K G M  A K F+ 
Sbjct: 193 FSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDE 252

Query: 197 MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF 256
           M  RDV++W  M+ GY +  D+ SA + F ++PE+N VSW  ++SGYARNG   +A  LF
Sbjct: 253 MSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELF 312

Query: 257 ----------DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYV 306
                     DQ    + +   A IA+     QI   A L     + N +  + +ID Y 
Sbjct: 313 TKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIH--AYLLRINFQPNTIVVSALIDMYS 370

Query: 307 RIAKLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKI----GTHDVVCWN 361
           +   L   R++ D M  K ++     +IS   Q+   +EA Q+ D +       D + + 
Sbjct: 371 KCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFV 430

Query: 362 VMIKGYAQCGRMDEAINLFRQM-VNKDIVT----WNTMIAGYAQIRQMDDAVKIFEEMGK 416
           V++   +  G + + +N F  M  +  IV     +  +I    +    ++ +   E+M  
Sbjct: 431 VILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPY 490

Query: 417 RRNTVSWNALI 427
           + +   WNAL+
Sbjct: 491 KPDDRVWNALL 501


>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
          Length = 954

 Score =  364 bits (935), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 210/616 (34%), Positives = 337/616 (54%), Gaps = 30/616 (4%)

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSK---NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV 202
           +V+ YA  G  ++A+++ +  P +   N++ WNS+L     +G    A + +  M +  V
Sbjct: 72  VVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGV 131

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQ--------NVVSWVTMLSGYARNGRMLEARR 254
            +        +    L  + K  + +           N+     ++  Y + GRM +AR+
Sbjct: 132 SADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARK 191

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAK 310
           +F++M +R+ V+WN M++ Y        A+ +F  M     E N V+WT+++  + R  +
Sbjct: 192 VFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQ 251

Query: 311 LDEARRLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFDKI--GTHD--VVCWNV 362
             E   L  +M  + I A       ++S  V     DE   I   +  G  +  +   N 
Sbjct: 252 HVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNS 311

Query: 363 MIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK------ 416
           +I  Y + G ++ A  LF ++  K+IV+WN +I+ YA +   D+A  IF ++ K      
Sbjct: 312 LICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPM 371

Query: 417 -RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
            R N VSW+A+I GF       +AL++F  M     KA+  T+A  LS CA LAAL LGR
Sbjct: 372 VRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGR 431

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
           +IH   ++S    ++ VGN LI MY K G  +   L+F+  +  D+ISWN+++AGY I+G
Sbjct: 432 EIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHG 491

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHY 595
               AI+ F++M+ +G  PD VTF+ VLSACSH GLV  G +LF+ M + + +EP +EHY
Sbjct: 492 LGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHY 551

Query: 596 ACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEP 655
           ACM+DLL RAG L EA ++VK M ++PNA +WG LL +CRMH+N ++      ++  L  
Sbjct: 552 ACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNS 611

Query: 656 QKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQC 715
           +    Y LLSN++A +GRW++  KVR+S +  G +K PG SWI+VK +++ F +G+ +  
Sbjct: 612 EIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHA 671

Query: 716 RTAEICNTLKTLAAQI 731
              E+   LK L  Q+
Sbjct: 672 ELEEVYRILKDLGLQM 687



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 133/565 (23%), Positives = 242/565 (42%), Gaps = 105/565 (18%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR---NLVSWNSMIAGYLHNDK 92
           +I    S ++      ++S YA  G V+DA+++FE  P     NL+ WNS++   + +  
Sbjct: 56  QIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGY 115

Query: 93  VKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNA 145
            +EA E++ +M +     D F++ L+I      G  +  R +   +     + +    N 
Sbjct: 116 CEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNE 175

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERD 201
           ++  Y KIG  ++A+K+ + M  ++ VSWN+M+SGY  N + H AS+ F  M     E +
Sbjct: 176 LMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPN 235

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKI-------------------------PEQNVVSW 236
           +V+W  +L  +          + F ++                          E  V+  
Sbjct: 236 LVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHG 295

Query: 237 VTMLSG--------------YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEE 282
             +  G              Y ++G +  AR LF ++  +N+V+WNA+I++Y   G  +E
Sbjct: 296 YVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDE 355

Query: 283 AARLFIE--------MPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMIS 334
           A  +F++        M   N VSW+ +I G+    + +EA  L  +M    + A +  I+
Sbjct: 356 AFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIA 415

Query: 335 GYVQNKRMDEANQIFDKIGTH--------DVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
             +       A  +  +I  H        +++  N +I  Y + G   E   +F ++ NK
Sbjct: 416 SVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENK 475

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446
           D+++WNTM+AGY                            I G  +N     A++ F  M
Sbjct: 476 DLISWNTMVAGYG---------------------------IHGLGEN-----AIRTFDQM 503

Query: 447 TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS-LITMYAKCGR 505
            ++G + D  T    LSAC+H   +  GR++    IK   V       + ++ +  + G 
Sbjct: 504 IKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGL 563

Query: 506 IQNAELLFKDADPVD--VISWNSLI 528
           +Q A  + K   PV+     W +L+
Sbjct: 564 LQEASKVVKSM-PVEPNACVWGALL 587



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 112/253 (44%), Gaps = 24/253 (9%)

Query: 472 QLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS----WNSL 527
            L +QIH   I +G     F+   ++++YA  G + +A+ +F +  P++  S    WNS+
Sbjct: 48  HLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVF-EVSPIECFSNLLLWNSI 106

Query: 528 IAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG------LVDGGLKLFEC 581
           +     +G   EA++++  M   GV+ D  TF  V+ AC+ +G       V G +     
Sbjct: 107 LRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGF 166

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIK 641
              ++    L+  Y        + GR+D+A ++ + M ++     W T++    ++ +  
Sbjct: 167 QWNLHVGNELMGMYG-------KIGRMDDARKVFERMAVRSCVS-WNTMVSGYALNYDCH 218

Query: 642 LGRIAVEKLSE--LEPQKTSCYALLSNMHAEAGRWDEVEKV--RVSMEGSGAQKQPGCSW 697
                   +    LEP   +  +LLS+ HA  G+  E  ++  R+ M G GA  +     
Sbjct: 219 GASEMFRMMGSAGLEPNLVTWTSLLSS-HARCGQHVETMELFGRMRMRGIGATAEALAVV 277

Query: 698 IEVKNQIHTFLSG 710
           + V   +  F  G
Sbjct: 278 LSVSVDLAAFDEG 290


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  364 bits (935), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 230/745 (30%), Positives = 386/745 (51%), Gaps = 64/745 (8%)

Query: 17  NQNKKITQLGKSGRVEEAIKIFS--QMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           ++N KI +  + G +  A+K+ S  Q S+    TY S++   A+   + D +++   +  
Sbjct: 26  DKNAKICKFCEMGDLRNAMKLLSRSQRSELELNTYCSVLQLCAELKSLEDGKRVHSIISS 85

Query: 75  RNL----VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
             +    V    ++  Y++   + + R +FD +    +F W L+++ Y + G   ++  L
Sbjct: 86  NGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGL 145

Query: 131 FDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN----SMLSGYTK 183
           F+ +     + D+  +  ++ G+A      E K++   +      S+N    S+++ Y K
Sbjct: 146 FEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFK 205

Query: 184 NGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTM 239
            GE+  A   F+ + +RDVVSWN M+ G        +  +FF ++    V     + V +
Sbjct: 206 CGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNV 265

Query: 240 LSGYARNGRMLEARRLFDQMPIR-----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
           L   A  G +   R L     ++      V+  N ++  Y + G +  A  +F++M E  
Sbjct: 266 LVACANVGNLTLGRAL-HAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETT 324

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYK----NIAAQTAMISGYVQNKRMDEANQIFD 350
            VSWT++I  +VR     EA  L D+M  K    +I A T+++     +  +D+  ++ +
Sbjct: 325 IVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHN 384

Query: 351 KIGTHD----VVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDD 406
            I  ++    +   N ++  YA+CG M+EA NL                           
Sbjct: 385 HIKKNNMGSNLPVSNALMNMYAKCGSMEEA-NL--------------------------- 416

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
              IF ++   +N VSWN +I G+ QN    +AL++F+ M Q+  K D  T+AC L ACA
Sbjct: 417 ---IFSQL-PVKNIVSWNTMIGGYSQNSLPNEALQLFLDM-QKQLKPDDVTMACVLPACA 471

Query: 467 HLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNS 526
            LAAL+ GR+IH   ++ GY +DL V  +L+ MY KCG +  A+ LF      D+I W  
Sbjct: 472 GLAALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTV 531

Query: 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVY 586
           +IAGY ++G   EAI  FE+M + G+ P+  +F  +L AC+H GL+  G KLF+ M    
Sbjct: 532 MIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSEC 591

Query: 587 AIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIA 646
            IEP +EHYACM+DLL R+G L  A++ ++ M IKP+A IWG LL  CR+H +++L    
Sbjct: 592 NIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELAEKV 651

Query: 647 VEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHT 706
            E + ELEP+ T  Y LL+N++AEA +W+EV+K++  +   G +   GCSWIEV+ + + 
Sbjct: 652 AEHIFELEPENTRYYVLLANVYAEAEKWEEVKKIQRRISKGGLKNDQGCSWIEVQGKFNI 711

Query: 707 FLSGDPKQCRTAEICNTLKTLAAQI 731
           F +GD    +   I + L+ L  ++
Sbjct: 712 FFAGDTSHPQAKMIDSLLRKLTMKM 736



 Score =  106 bits (265), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 107/469 (22%), Positives = 183/469 (39%), Gaps = 129/469 (27%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GSY    N  I    K G VE A  +F ++S ++ V++NSMIS    NG   +  + F Q
Sbjct: 190 GSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQ 249

Query: 72  MPQ--------------------------RNLVSW-------------NSMIAGYLHNDK 92
           M                            R L ++             N+++  Y     
Sbjct: 250 MLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGN 309

Query: 93  VKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK-------------ED 139
           +  A E+F KM    + SW  +I  + R+G   +A  LFD + +K               
Sbjct: 310 LNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHA 369

Query: 140 TACWNAMVAG-------------------------YAKIGNYNEAKKLLDAMPSKNIVSW 174
            AC N++  G                         YAK G+  EA  +   +P KNIVSW
Sbjct: 370 CACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSW 429

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEER---------------------------------- 200
           N+M+ GY++N   + A + F  M+++                                  
Sbjct: 430 NTMIGGYSQNSLPNEALQLFLDMQKQLKPDDVTMACVLPACAGLAALEKGREIHGHILRK 489

Query: 201 ----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF 256
               D+     ++D YV+   L  A + F  IP+++++ W  M++GY  +G   EA   F
Sbjct: 490 GYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTF 549

Query: 257 DQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVR 307
           ++M +  +     ++ +++ A    G ++E  +LF  M     +      +  M+D  +R
Sbjct: 550 EKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIR 609

Query: 308 IAKLDEARRLLDQMPYKNIAAQ-TAMISGYVQNKRMDEANQIFDKIGTH 355
              L  A + ++ MP K  AA   A++SG     R+    ++ +K+  H
Sbjct: 610 SGNLSRAYKFIETMPIKPDAAIWGALLSGC----RIHHDVELAEKVAEH 654



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 123/251 (49%), Gaps = 20/251 (7%)

Query: 10  NKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLF 69
           N GS +   N  +    K G +EEA  IFSQ+  KN V++N+MI  Y++N   N+A +LF
Sbjct: 390 NMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLF 449

Query: 70  EQMPQR---NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITC-----YTRK 121
             M ++   + V+   ++        +++ RE+   + R   FS  L + C     Y + 
Sbjct: 450 LDMQKQLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFS-DLHVACALVDMYVKC 508

Query: 122 GELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSM 177
           G L  A++LFD++P K+D   W  M+AGY   G   EA    + M    I     S+ S+
Sbjct: 509 GLLVLAQQLFDMIP-KKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSI 567

Query: 178 LSGYTKNGEMHLASKFFEAME-----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-EQ 231
           L   T +G +    K F++M+     E  +  +  M+D  +   +L  A+KF + +P + 
Sbjct: 568 LYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKP 627

Query: 232 NVVSWVTMLSG 242
           +   W  +LSG
Sbjct: 628 DAAIWGALLSG 638


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  364 bits (935), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 208/649 (32%), Positives = 349/649 (53%), Gaps = 60/649 (9%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N ++  YAK G + +A  L + MP K   SWN++LSGY K G++  A + F+ +  RD V
Sbjct: 14  NNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSV 73

Query: 204 SWNLMLDGYVELDDLDSAWKFF------QKIPEQNVVSWV-------------------- 237
           SW  ++ GY ++   + A K F      + +P Q  ++ V                    
Sbjct: 74  SWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFV 133

Query: 238 -------------TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA 284
                        ++L+ YA+ G +  A+ +FD+M +RN  +WNAMI+ ++  G+++ A 
Sbjct: 134 VKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLAL 193

Query: 285 RLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL-----DQMPYKNIAAQTAMISGYVQN 339
             F  + ER+ VSW +MI G  +    +EA +       D     +  +  + +S     
Sbjct: 194 AQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANL 253

Query: 340 KRMDEANQI--------FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ--MVNKDIV 389
           +++    QI        FD  G       N +I  YA+ G ++ A  +  Q  + + D++
Sbjct: 254 EKLSFGKQIHGYIVRTMFDASGA----VGNALISMYAKSGGVEIARRIIEQSGISDLDVI 309

Query: 390 TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
            +  ++ GY ++  +  A +IF  + K  + V+W A+I G++QN  + DA+++F  M  E
Sbjct: 310 AFTALLNGYVKLGDITPARQIFNSL-KDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSE 368

Query: 450 GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA 509
           G + +  TLA  LSA + + +L  G+QIH  AI+SG      VGN+L TMYAK G I  A
Sbjct: 369 GPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGA 428

Query: 510 ELLFKDA-DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
             +F       D +SW S+I   A +G   EAI+LFE+M+  G+ PD +T++GVLSAC+H
Sbjct: 429 RKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTH 488

Query: 569 VGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWG 628
            GLV+ G   F+ M  V+ I+P + HYACM+DL  RAG L EA++ V+ M ++P+   WG
Sbjct: 489 GGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWG 548

Query: 629 TLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688
           +LL +C++++N+ L ++A E+L  +EP  +  Y+ L+N+++  G+WD+  K+R  M+  G
Sbjct: 549 SLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARG 608

Query: 689 AQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNTPLA 737
            +K+ G SW++++N+ H F   D    +  EI   +  +  +I+    A
Sbjct: 609 VKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKEIKKMGFA 657



 Score =  195 bits (496), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 185/733 (25%), Positives = 335/733 (45%), Gaps = 100/733 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V+  N  +    K+G   +A  +F++M  K T ++N+++S YAK G++  A ++F+ +P 
Sbjct: 10  VYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPV 69

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAREL 130
           R+ VSW ++I GY    + ++A ++F  M +    P  F+   ++      G     +++
Sbjct: 70  RDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKV 129

Query: 131 FDLLPNKEDTAC---WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
              +      AC    N+++  YAK G+   AK + D M  +N  SWN+M+S +   G +
Sbjct: 130 HSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRV 189

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV-----SWVTMLSG 242
            LA   FE + ERD+VSWN M+ G  +    + A +FF  I +   +     S  + LS 
Sbjct: 190 DLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSA 249

Query: 243 YAR-----NGRMLEA---RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIE--MPE 292
            A       G+ +     R +FD     +    NA+I+ Y + G +E A R+  +  + +
Sbjct: 250 CANLEKLSFGKQIHGYIVRTMFDA----SGAVGNALISMYAKSGGVEIARRIIEQSGISD 305

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
            + +++T +++GYV++  +  AR++ + +   ++ A TAMI GYVQN   ++A ++F  +
Sbjct: 306 LDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTM 365

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT--------WNTMIAGYAQIRQM 404
            +      +  +           ++N  +Q+    I +         N +   YA+   +
Sbjct: 366 VSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSI 425

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSA 464
           + A K+F  + + R+TVSW ++I    Q+    +A+++F  M   G K DH T    LSA
Sbjct: 426 NGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSA 485

Query: 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVGN--SLITMYAKCGRIQNAELLFKDADPVDVI 522
           C H   ++ GR    L +K+ +  D  + +   ++ ++ + G +Q               
Sbjct: 486 CTHGGLVEQGRSYFDL-MKNVHKIDPTLSHYACMVDLFGRAGLLQ--------------- 529

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
                           EA K  E M ME   PD + +  +LS+C     VD    L +  
Sbjct: 530 ----------------EAYKFVENMPME---PDVIAWGSLLSSCKVYKNVD----LAKVA 566

Query: 583 TE-VYAIEPLVE-HYACMIDLLSRAGRLDEAFEMVKGMK---IKPNAGI-WGTLLGACRM 636
            E +  IEP     Y+ + ++ S  G+ D+A ++ K MK   +K   G+ W  +      
Sbjct: 567 AERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQI------ 620

Query: 637 HQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCS 696
            QN K     VE    L PQK   Y ++  +      W E++K+  + +           
Sbjct: 621 -QN-KTHVFGVE--DGLHPQKDEIYKMMDKI------WKEIKKMGFAPDTESVLHDLE-- 668

Query: 697 WIEVKNQIHTFLS 709
            +EVK+QI  + S
Sbjct: 669 -VEVKDQILRYHS 680



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 139/528 (26%), Positives = 237/528 (44%), Gaps = 114/528 (21%)

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
           +V   N ++  Y + G   +A  LF EMP +   SW T++ GY +  KL++A ++ D +P
Sbjct: 9   SVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIP 68

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIF--------------------------------- 349
            ++  + T +I GY Q  R ++A +IF                                 
Sbjct: 69  VRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKK 128

Query: 350 -----DKIGTHDVV-CWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQ 403
                 K+G H  V   N ++  YA+ G +  A  +F +M  ++  +WN MI+ +    +
Sbjct: 129 VHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGR 188

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF-VLMTQEGKKADHSTLACAL 462
           +D A+  FE + + R+ VSWN++I+G  Q+ F  +AL+ F  ++     K D  +LA AL
Sbjct: 189 VDLALAQFELLSE-RDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASAL 247

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA------ 516
           SACA+L  L  G+QIH   +++ +     VGN+LI+MYAK G ++ A  + + +      
Sbjct: 248 SACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLD 307

Query: 517 ----------------------------DPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
                                       DP DV++W ++I GY  NG   +AI++F+ MV
Sbjct: 308 VIAFTALLNGYVKLGDITPARQIFNSLKDP-DVVAWTAMIVGYVQNGLNNDAIEVFKTMV 366

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLF---------------ECMTEVYAIEPLVE 593
            EG  P+  T   +LSA S V  ++ G ++                  +T +YA    + 
Sbjct: 367 SEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSIN 426

Query: 594 ----------------HYACMIDLLSRAGRLDEAFEMVKGM---KIKPNAGIWGTLLGAC 634
                            +  MI  L++ G  +EA E+ + M    IKP+   +  +L AC
Sbjct: 427 GARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSAC 486

Query: 635 RMHQNIKLGRI---AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEK 679
                ++ GR     ++ + +++P   S YA + ++   AG   E  K
Sbjct: 487 THGGLVEQGRSYFDLMKNVHKIDPT-LSHYACMVDLFGRAGLLQEAYK 533



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 127/252 (50%), Gaps = 34/252 (13%)

Query: 351 KIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVK 409
           K+G T  V   N ++  YA+ G   +A +LF +M  K   +WNT+++GYA+  +++ A +
Sbjct: 3   KLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQ 62

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           +F+ +   R++VSW  +I G+ Q     DA+KIFV M ++       TL   L++CA   
Sbjct: 63  VFDLI-PVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATG 121

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK--------------------------- 502
           +  +G+++H   +K G    + V NSL+ MYAK                           
Sbjct: 122 SRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMIS 181

Query: 503 ----CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME-GVAPDPV 557
               CGR+  A   F+     D++SWNS+IAG   +G   EA++ F  ++ +  + PD  
Sbjct: 182 LHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRF 241

Query: 558 TFIGVLSACSHV 569
           +    LSAC+++
Sbjct: 242 SLASALSACANL 253



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 87/207 (42%), Gaps = 43/207 (20%)

Query: 482 IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNA---- 537
           +K G    +++ N+L+ +YAK G   +A  LF +       SWN++++GYA  G      
Sbjct: 2   VKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAH 61

Query: 538 ---------------------------TEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
                                       +AIK+F +MV + V P   T   VL++C+  G
Sbjct: 62  QVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATG 121

Query: 571 LVDGGLKL--FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWG 628
               G K+  F     ++A  P+      ++++ ++ G L  A  +   MK++ N   W 
Sbjct: 122 SRGIGKKVHSFVVKLGLHACVPVAN---SLLNMYAKTGDLKMAKVVFDRMKLR-NTSSWN 177

Query: 629 TLLGACRMHQN---IKLGRIAVEKLSE 652
            ++    +H N   + L     E LSE
Sbjct: 178 AMIS---LHMNCGRVDLALAQFELLSE 201


>gi|297816638|ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322040|gb|EFH52461.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 769

 Score =  364 bits (935), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 218/719 (30%), Positives = 373/719 (51%), Gaps = 86/719 (11%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           I +   + +T+  N ++S Y K G + DAR++F+ MP+RNLVS+ S+I GY  N +  EA
Sbjct: 90  ILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQEAEA 149

Query: 97  RELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTA---CWNAMVAG 149
             L+ KM +    PD F++  +I      G++   ++L   +   E ++     NA++A 
Sbjct: 150 ITLYLKMLQADLVPDQFAFGSIIKACACAGDVVLGKQLHAQVIKLESSSHLIAQNALIAM 209

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE-RDVVSWNLM 208
           Y +    ++A K+   +P+K+++SW+S+++G+++ G        FEA+   ++++S+ + 
Sbjct: 210 YVRFNQMSDASKVFYGIPAKDLISWSSIIAGFSQLGFE------FEALSHLKEMLSFGVF 263

Query: 209 L-DGYVELDDLDSAWKFFQKIPEQ---------------NVVSWVTMLSGYARNGRMLEA 252
             + Y+    L +     +  P+                N ++  ++   YAR G +  A
Sbjct: 264 HPNEYIFGSSLKACSSLLR--PDYGSQIHGLCIKLELTGNAIAGCSLCDMYARCGFLDSA 321

Query: 253 RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLD 312
           RR+F+Q+   +  +WN +IA     G  +EA  +F EM  RN                  
Sbjct: 322 RRVFNQIERPDTASWNVIIAGLANNGYADEAVSVFSEM--RN------------------ 361

Query: 313 EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGR 372
                                SG++            D I    ++C     K  A C  
Sbjct: 362 ---------------------SGFIP-----------DAISLRSLLC--AQTKPMALCQG 387

Query: 373 MDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
           M     + +     D+   N+++  Y     +     +FE+   + ++VSWNA+++  LQ
Sbjct: 388 MQIHSFIIKCGFLADLSVCNSLLTMYTFCSDLYCCFNLFEDFRNKADSVSWNAILTACLQ 447

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
           +E  ++ L++F LM     + DH T+   L  C  +++L+LG Q+H  + K+G V + F+
Sbjct: 448 HEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSWKTGLVLEQFI 507

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
            N LI MYAKCG ++ A  +F   D  DV+SW++LI GYA +G   EA+ LF EM   G+
Sbjct: 508 KNGLIDMYAKCGSLRQARRIFDSMDNGDVVSWSTLIVGYAQSGFGEEALILFREMKSSGI 567

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
            P+ VTF+GVL+ACSHVGLV+ GLKL+  M   + I P  EH +C++DLL+RAG L+EA 
Sbjct: 568 EPNHVTFVGVLTACSHVGLVEEGLKLYAIMQTEHGISPTKEHCSCVVDLLARAGHLNEAE 627

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672
             +  MK++P+  +W TLL AC+   N+ L + A E + +++P  ++ + LL +MHA +G
Sbjct: 628 RFIDEMKLEPDVVVWKTLLSACKTQGNVDLAQKAAENILKIDPFNSTAHVLLCSMHASSG 687

Query: 673 RWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
            W++   +R SM+    +K PG SWI+V+++IH F + D       +I   L  + +Q+
Sbjct: 688 NWEDAALLRSSMKKHDVKKIPGQSWIDVEDKIHIFFAEDVLHPERDDIYTVLHNIWSQM 746



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 86/194 (44%), Gaps = 38/194 (19%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F +N  I    K G + +A +IF  M   + V+++++I  YA++G   +A  LF +M   
Sbjct: 506 FIKNGLIDMYAKCGSLRQARRIFDSMDNGDVVSWSTLIVGYAQSGFGEEALILFREMKSS 565

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL- 134
            +                            P+  ++  ++T  +  G +E+  +L+ ++ 
Sbjct: 566 GI---------------------------EPNHVTFVGVLTACSHVGLVEEGLKLYAIMQ 598

Query: 135 ------PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNGEM 187
                 P KE  +C   +V   A+ G+ NEA++ +D M    ++V W ++LS     G +
Sbjct: 599 TEHGISPTKEHCSC---VVDLLARAGHLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNV 655

Query: 188 HLASKFFEAMEERD 201
            LA K  E + + D
Sbjct: 656 DLAQKAAENILKID 669


>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
          Length = 1753

 Score =  364 bits (935), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 210/616 (34%), Positives = 337/616 (54%), Gaps = 30/616 (4%)

Query: 146  MVAGYAKIGNYNEAKKLLDAMPSK---NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV 202
            +V+ YA  G  ++A+++ +  P +   N++ WNS+L     +G    A + +  M +  V
Sbjct: 910  VVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGV 969

Query: 203  VSWNLMLDGYVELDDLDSAWKFFQKIPEQ--------NVVSWVTMLSGYARNGRMLEARR 254
             +        +    L  + K  + +           N+     ++  Y + GRM +AR+
Sbjct: 970  SADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARK 1029

Query: 255  LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAK 310
            +F++M +R+ V+WN M++ Y        A+ +F  M     E N V+WT+++  + R  +
Sbjct: 1030 VFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQ 1089

Query: 311  LDEARRLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFDKI--GTHD--VVCWNV 362
              E   L  +M  + I A       ++S  V     DE   I   +  G  +  +   N 
Sbjct: 1090 HVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNS 1149

Query: 363  MIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK------ 416
            +I  Y + G ++ A  LF ++  K+IV+WN +I+ YA +   D+A  IF ++ K      
Sbjct: 1150 LICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPM 1209

Query: 417  -RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
             R N VSW+A+I GF       +AL++F  M     KA+  T+A  LS CA LAAL LGR
Sbjct: 1210 VRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGR 1269

Query: 476  QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
            +IH   ++S    ++ VGN LI MY K G  +   L+F+  +  D+ISWN+++AGY I+G
Sbjct: 1270 EIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHG 1329

Query: 536  NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHY 595
                AI+ F++M+ +G  PD VTF+ VLSACSH GLV  G +LF+ M + + +EP +EHY
Sbjct: 1330 LGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHY 1389

Query: 596  ACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEP 655
            ACM+DLL RAG L EA ++VK M ++PNA +WG LL +CRMH+N ++      ++  L  
Sbjct: 1390 ACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEETASQIFNLNS 1449

Query: 656  QKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQC 715
            +    Y LLSN++A +GRW++  KVR+S +  G +K PG SWI+VK +++ F +G+ +  
Sbjct: 1450 EIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHA 1509

Query: 716  RTAEICNTLKTLAAQI 731
               E+   LK L  Q+
Sbjct: 1510 ELEEVYRILKDLGLQM 1525



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 136/567 (23%), Positives = 241/567 (42%), Gaps = 109/567 (19%)

Query: 36   KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR---NLVSWNSMIAGYLHNDK 92
            +I    S ++      ++S YA  G V+DA+++FE  P     NL+ WNS++   + +  
Sbjct: 894  QIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGY 953

Query: 93   VKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVA 148
             +EA E++ +M +     D F++ L+I      G  +  R +   +   E    WN  V 
Sbjct: 954  CEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVV--EMGFQWNLHVG 1011

Query: 149  G-----YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----E 199
                  Y KIG  ++A+K+ + M  ++ VSWN+M+SGY  N + H AS+ F  M     E
Sbjct: 1012 NELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLE 1071

Query: 200  RDVVSWNLMLDGYVELDDLDSAWKFFQKI-------------------------PEQNVV 234
             ++V+W  +L  +          + F ++                          E  V+
Sbjct: 1072 PNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVI 1131

Query: 235  SWVTMLSG--------------YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQI 280
                +  G              Y ++G +  AR LF ++  +N+V+WNA+I++Y   G  
Sbjct: 1132 HGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWC 1191

Query: 281  EEAARLFIE--------MPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAM 332
            +EA  +F++        M   N VSW+ +I G+    + +EA  L  +M    + A +  
Sbjct: 1192 DEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVT 1251

Query: 333  ISGYVQNKRMDEANQIFDKIGTH--------DVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
            I+  +       A  +  +I  H        +++  N +I  Y + G   E   +F ++ 
Sbjct: 1252 IASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIE 1311

Query: 385  NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
            NKD+++WNTM+AGY                            I G  +N     A++ F 
Sbjct: 1312 NKDLISWNTMVAGYG---------------------------IHGLGEN-----AIRTFD 1339

Query: 445  LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS-LITMYAKC 503
             M ++G + D  T    LSAC+H   +  GR++    IK   V       + ++ +  + 
Sbjct: 1340 QMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRA 1399

Query: 504  GRIQNAELLFKDADPVD--VISWNSLI 528
            G +Q A  + K   PV+     W +L+
Sbjct: 1400 GLLQEASKVVKSM-PVEPNACVWGALL 1425



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 115/255 (45%), Gaps = 28/255 (10%)

Query: 472  QLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS----WNSL 527
             L +QIH   I +G     F+   ++++YA  G + +A+ +F +  P++  S    WNS+
Sbjct: 886  HLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVF-EVSPIECFSNLLLWNSI 944

Query: 528  IAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG------LVDGGLKLFEC 581
            +     +G   EA++++  M   GV+ D  TF  V+ AC+ +G       V G +     
Sbjct: 945  LRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGF 1004

Query: 582  MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRM----H 637
               ++    L+  Y        + GR+D+A ++ + M ++     W T++    +    H
Sbjct: 1005 QWNLHVGNELMGMYG-------KIGRMDDARKVFERMAVRSCVS-WNTMVSGYALNYDCH 1056

Query: 638  QNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKV--RVSMEGSGAQKQPGC 695
               ++ R+     + LEP   +  +LLS+ HA  G+  E  ++  R+ M G GA  +   
Sbjct: 1057 GASEMFRMMGS--AGLEPNLVTWTSLLSS-HARCGQHVETMELFGRMRMRGIGATAEALA 1113

Query: 696  SWIEVKNQIHTFLSG 710
              + V   +  F  G
Sbjct: 1114 VVLSVSVDLAAFDEG 1128


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  364 bits (934), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 229/763 (30%), Positives = 377/763 (49%), Gaps = 68/763 (8%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ---RNLVSWNSMIAGYLHNDKV 93
           + + +   +T     ++  Y    R  DA  +F  +P+      + WN +I G       
Sbjct: 66  VTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGLTMAGDY 125

Query: 94  KEARELFDKMFR------PDLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWN 144
           + A   + KM+       PD  ++  ++      G +   R +      L    D    +
Sbjct: 126 RSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGS 185

Query: 145 AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS 204
           A++  YA  G   +A+++ D M  ++ V WN M+ GY K G +  A + F  M       
Sbjct: 186 ALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEP 245

Query: 205 WNLMLDGYVELDDLDSAWKFFQKIP--------EQNVVSWVTMLSGYARNGRMLEARRLF 256
               L  ++ +   +S   F  ++         E  V    T++S YA+   + +  +LF
Sbjct: 246 NFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLF 305

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLD 312
             MP  ++V WN MI+  VQ G +++A  LF +M +     + V+  +++     +   +
Sbjct: 306 GLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFN 365

Query: 313 EARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
           + + L    +    + ++   +A++  Y + + +  A  ++D     DVV  + MI GY 
Sbjct: 366 QGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYV 425

Query: 369 QCGRMDEAINLFRQMVNKDIVTWNTMIAG------------------------------- 397
             G   EA+ +FR ++ + I      IA                                
Sbjct: 426 LNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCY 485

Query: 398 --------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
                   YA+  ++D +  IF ++  + + V+WN++IS F QN    +AL +F  M  E
Sbjct: 486 VESALMDMYAKCGRLDLSHYIFSKISAK-DEVTWNSMISSFAQNGEPEEALNLFREMCME 544

Query: 450 GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA 509
           G K  + T++  LSACA L A+  G++IH + IK     DLF  ++LI MY KCG ++ A
Sbjct: 545 GVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWA 604

Query: 510 ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
             +F+     + +SWNS+IA Y   G   E++ L   M  EG   D VTF+ ++SAC+H 
Sbjct: 605 HRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHA 664

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629
           G V  GL+LF CMTE Y I P +EH+ACM+DL SRAG+LD+A E++  M  KP+AGIWG 
Sbjct: 665 GQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGA 724

Query: 630 LLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689
           LL ACR+H+N++L  IA ++L +L+P  +  Y L+SN++A AGRWD V KVR  M+ +  
Sbjct: 725 LLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKV 784

Query: 690 QKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           QK PG SW++V N  H F++ D     + +I  +LK++  ++R
Sbjct: 785 QKIPGYSWVDVNNTSHLFVAADKSHPDSEDIYMSLKSILLELR 827



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 137/588 (23%), Positives = 251/588 (42%), Gaps = 83/588 (14%)

Query: 6   KSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDA 65
           +++G  G  +F  +  I      G + +A ++F  M++++ V +N M+  Y K G V+ A
Sbjct: 173 RTLGLDGD-MFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSA 231

Query: 66  RKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELE 125
            +LF  M         + +A +L     +            DLF    + T   + G LE
Sbjct: 232 VELFGDMRASGCEPNFATLACFLSVSATES-----------DLFFGVQLHTLAVKYG-LE 279

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
                        + A  N +V+ YAK    ++  KL   MP  ++V+WN M+SG  +NG
Sbjct: 280 ------------SEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNG 327

Query: 186 EMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
            +  A   F  M++     D V+   +L    +L+  +   +    I    V   V ++S
Sbjct: 328 FVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVS 387

Query: 242 G----YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER---- 293
                Y +   +  A+ ++D     +VV  + MI+ YV  G  +EA ++F  + E+    
Sbjct: 388 ALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRP 447

Query: 294 NPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIF 349
           N V+  +++     +A +   + L    L          ++A++  Y +  R+D ++ IF
Sbjct: 448 NAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIF 507

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-------------------------- 383
            KI   D V WN MI  +AQ G  +EA+NLFR+M                          
Sbjct: 508 SKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIY 567

Query: 384 -------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
                        +  D+   + +I  Y +   ++ A ++FE M   +N VSWN++I+ +
Sbjct: 568 YGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESM-PEKNEVSWNSIIASY 626

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
                  +++ +   M +EG KADH T    +SACAH   +Q G ++     +   +   
Sbjct: 627 GAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPR 686

Query: 491 FVGNS-LITMYAKCGRIQNA-ELLFKDADPVDVISWNSLIAGYAINGN 536
               + ++ +Y++ G++  A EL+       D   W +L+    ++ N
Sbjct: 687 MEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRN 734


>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 853

 Score =  364 bits (934), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 241/769 (31%), Positives = 387/769 (50%), Gaps = 83/769 (10%)

Query: 25  LGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR--NLVSWNS 82
           L + G+   A  I +++S  ++ T   ++  YA  G  ++  K+F ++  R  ++  WNS
Sbjct: 46  LLRQGKQVHAFVIVNRIS-GDSYTDERILGMYAMCGSFSNCGKMFYRLDSRLSSIRPWNS 104

Query: 83  MIAGYLHNDKVKEARELFDKMF----RPDLFSWALMI-TCYTRKG--ELEKARELFDLLP 135
           +I+ ++    + +A   + KM      PD+ ++  ++  C   K    +E   +    L 
Sbjct: 105 IISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIEFLSDTVSSLG 164

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
              +    ++++  Y + G  + A KL D +  K+ V WN ML+GY K G      K F 
Sbjct: 165 MDCNEFVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFS 224

Query: 196 AMEERDVVSWN--------------LMLDGYVELDDLD--SAWKFFQKIPEQNVVSWVTM 239
            M   D +S N              L++D  V+L  L   S   F   I         ++
Sbjct: 225 LMR-MDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGSIKN-------SL 276

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NP 295
           LS Y++ GR  +A +LF  M   + V WN MI+ YVQ G +EE+   F EM       + 
Sbjct: 277 LSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLPDA 336

Query: 296 VSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK 351
           +++++++    +   L+  R++    +      +I   +A+I  Y + + +  A +IF +
Sbjct: 337 ITFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIFSQ 396

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI-------VTWNTMIAG------- 397
             + DVV +  MI GY   G   +A+ +FR +V   I       V+   +I G       
Sbjct: 397 CNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLALKLG 456

Query: 398 -------------------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
                                    YA+  +M+ A +IF  + KR + VSWN++I+   Q
Sbjct: 457 RELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSKR-DIVSWNSMITRCAQ 515

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
           ++    A+ IF  M   G   D  +++ ALSACA+L +   G+ IH   IK     D++ 
Sbjct: 516 SDNPSAAIDIFRQMGVSGICFDCVSISAALSACANLPSESFGKAIHGFMIKHSLALDVYS 575

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV-MEG 551
            ++LI MYAKCG ++ A  +F      +++SWNS+IA Y  +G   +++ LF EMV   G
Sbjct: 576 ESTLIDMYAKCGNLKAAMNVFDTMKEKNIVSWNSIIAAYGNHGKLKDSLCLFHEMVEKSG 635

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
             PD +TF+ ++S C HVG VD G++ F  MT+ Y I+P  EHYAC++DL  RAGRL EA
Sbjct: 636 NRPDQITFLEIISLCCHVGDVDEGVRFFRSMTQDYGIQPQQEHYACVVDLFGRAGRLSEA 695

Query: 612 FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEA 671
           +E VK M   P+AG+WGTLLGA R+H+N++L ++A  +L +L+P  +  Y L+SN HA  
Sbjct: 696 YETVKSMPFPPDAGVWGTLLGASRLHKNVELAKVASSRLMDLDPWNSGYYVLISNAHANT 755

Query: 672 GRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           G W+ V KVR  M+    QK PG SWIE+    H F+SGD     ++ I
Sbjct: 756 GEWESVTKVRSLMKEREVQKIPGYSWIEINKITHLFVSGDVNHPESSHI 804



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/395 (22%), Positives = 172/395 (43%), Gaps = 92/395 (23%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           +N  ++   K GR ++AIK+F  MS+ +TVT+N MIS Y ++G + ++   F +M    +
Sbjct: 273 KNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGV 332

Query: 78  ----VSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKARE 129
               ++++S++      + ++  R++   + R     D+F  + +I  Y +   +  A++
Sbjct: 333 LPDAITFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQK 392

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKK----LLDAMPSKNIVSWNSML------- 178
           +F    N  D   + AM++GY   G   +A +    L+    S N ++  S+L       
Sbjct: 393 IFSQC-NSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLL 451

Query: 179 ----------------------------SGYTKNGEMHLASKFFEAMEERDVVSWNLMLD 210
                                         Y K G M+LA + F  + +RD+VSWN M+ 
Sbjct: 452 ALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSKRDIVSWNSMIT 511

Query: 211 GYVELDDLDSAWKFFQK----------------------IPEQ----------------- 231
              + D+  +A   F++                      +P +                 
Sbjct: 512 RCAQSDNPSAAIDIFRQMGVSGICFDCVSISAALSACANLPSESFGKAIHGFMIKHSLAL 571

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
           +V S  T++  YA+ G +  A  +FD M  +N+V+WN++IAAY   G+++++  LF EM 
Sbjct: 572 DVYSESTLIDMYAKCGNLKAAMNVFDTMKEKNIVSWNSIIAAYGNHGKLKDSLCLFHEMV 631

Query: 292 ER-----NPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           E+     + +++  +I     +  +DE  R    M
Sbjct: 632 EKSGNRPDQITFLEIISLCCHVGDVDEGVRFFRSM 666



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 146/338 (43%), Gaps = 33/338 (9%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM-- 72
           +F  +  I    K   V  A KIFSQ +  + V + +MIS Y  NG   DA ++F  +  
Sbjct: 371 IFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVK 430

Query: 73  ----PQR-NLVSWNSMIAGYLHNDKVKEAREL----FDKMFRPDLFSWALMITCYTRKGE 123
               P    LVS   +I G L    +K  REL      K F         +I  Y + G 
Sbjct: 431 VKISPNEITLVSILPVIGGLL---ALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGR 487

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLS 179
           +  A E+F  L +K D   WN+M+   A+  N + A  +   M    I    VS ++ LS
Sbjct: 488 MNLAYEIFGRL-SKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCVSISAALS 546

Query: 180 GYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
                            M +     DV S + ++D Y +  +L +A   F  + E+N+VS
Sbjct: 547 ACANLPSESFGKAIHGFMIKHSLALDVYSESTLIDMYAKCGNLKAAMNVFDTMKEKNIVS 606

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIR-----NVVAWNAMIAAYVQRGQIEEAARLFIEM 290
           W ++++ Y  +G++ ++  LF +M  +     + + +  +I+     G ++E  R F  M
Sbjct: 607 WNSIIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQITFLEIISLCCHVGDVDEGVRFFRSM 666

Query: 291 PERNPVS-----WTTMIDGYVRIAKLDEARRLLDQMPY 323
            +   +      +  ++D + R  +L EA   +  MP+
Sbjct: 667 TQDYGIQPQQEHYACVVDLFGRAGRLSEAYETVKSMPF 704



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 95/207 (45%), Gaps = 25/207 (12%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V++++  I    K G ++ A+ +F  M +KN V++NS+I+AY  +G++ D+  LF +M +
Sbjct: 573 VYSESTLIDMYAKCGNLKAAMNVFDTMKEKNIVSWNSIIAAYGNHGKLKDSLCLFHEMVE 632

Query: 75  R-----NLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGEL 124
           +     + +++  +I+   H   V E    F  M      +P    +A ++  + R G L
Sbjct: 633 KSGNRPDQITFLEIISLCCHVGDVDEGVRFFRSMTQDYGIQPQQEHYACVVDLFGRAGRL 692

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK----KLLDAMPSKNIVSWNS---- 176
            +A E    +P   D   W  ++       N   AK    +L+D  P      WNS    
Sbjct: 693 SEAYETVKSMPFPPDAGVWGTLLGASRLHKNVELAKVASSRLMDLDP------WNSGYYV 746

Query: 177 -MLSGYTKNGEMHLASKFFEAMEERDV 202
            + + +   GE    +K    M+ER+V
Sbjct: 747 LISNAHANTGEWESVTKVRSLMKEREV 773



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 116/261 (44%), Gaps = 40/261 (15%)

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK--D 515
           L+  L  C++L  L+ G+Q+H   I +    D +    ++ MYA CG   N   +F   D
Sbjct: 34  LSLLLQDCSNLTLLRQGKQVHAFVIVNRISGDSYTDERILGMYAMCGSFSNCGKMFYRLD 93

Query: 516 ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
           +    +  WNS+I+ +   G   +A+  + +M+  GV+PD  TF  ++ AC  +    G 
Sbjct: 94  SRLSSIRPWNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGI 153

Query: 576 LKLFECMTEV------YAIEPLVEHYA------------------------CMIDLLSRA 605
             L + ++ +      +    L++ Y                          M++  ++ 
Sbjct: 154 EFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKC 213

Query: 606 GRLD---EAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL---SELEPQKTS 659
           G  D   + F +++  +I PNA  +  +L  C     I LG + +  L   S L+ + + 
Sbjct: 214 GASDSVIKGFSLMRMDQISPNAVTFDCVLSVCASKLLIDLG-VQLHGLVVVSGLDFEGSI 272

Query: 660 CYALLSNMHAEAGRWDEVEKV 680
             +LLS M+++ GR+D+  K+
Sbjct: 273 KNSLLS-MYSKCGRFDDAIKL 292



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 116/278 (41%), Gaps = 45/278 (16%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL---- 77
           I    K GR+  A +IF ++S+++ V++NSMI+  A++   + A  +F QM    +    
Sbjct: 479 IDMYAKCGRMNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFDC 538

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKARELFDL 133
           VS ++ ++   +       + +   M +     D++S + +I  Y + G L+ A  +FD 
Sbjct: 539 VSISAALSACANLPSESFGKAIHGFMIKHSLALDVYSESTLIDMYAKCGNLKAAMNVFDT 598

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
           +  K +   WN+++A Y   G   ++  L   M  K         SG             
Sbjct: 599 MKEK-NIVSWNSIIAAYGNHGKLKDSLCLFHEMVEK---------SG------------- 635

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI-------PEQNVVSWVTMLSGYARN 246
                  D +++  ++     + D+D   +FF+ +       P+Q   + V  L G  R 
Sbjct: 636 ----NRPDQITFLEIISLCCHVGDVDEGVRFFRSMTQDYGIQPQQEHYACVVDLFG--RA 689

Query: 247 GRMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQIEEA 283
           GR+ EA      MP   +   W  ++ A      +E A
Sbjct: 690 GRLSEAYETVKSMPFPPDAGVWGTLLGASRLHKNVELA 727


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 229/763 (30%), Positives = 377/763 (49%), Gaps = 68/763 (8%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ---RNLVSWNSMIAGYLHNDKV 93
           + + +   +T     ++  Y    R  DA  +F  +P+      + WN +I G       
Sbjct: 66  VTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGLTMAGDY 125

Query: 94  KEARELFDKMFR------PDLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWN 144
           + A   + KM+       PD  ++  ++      G +   R +      L    D    +
Sbjct: 126 RSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGS 185

Query: 145 AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS 204
           A++  YA  G   +A+++ D M  ++ V WN M+ GY K G +  A + F  M       
Sbjct: 186 ALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEP 245

Query: 205 WNLMLDGYVELDDLDSAWKFFQKIP--------EQNVVSWVTMLSGYARNGRMLEARRLF 256
               L  ++ +   +S   F  ++         E  V    T++S YA+   + +  +LF
Sbjct: 246 NFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLF 305

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLD 312
             MP  ++V WN MI+  VQ G +++A  LF +M +     + V+  +++     +   +
Sbjct: 306 GLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFN 365

Query: 313 EARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
           + + L    +    + ++   +A++  Y + + +  A  ++D     DVV  + MI GY 
Sbjct: 366 QGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYV 425

Query: 369 QCGRMDEAINLFRQMVNKDIVTWNTMIAG------------------------------- 397
             G   EA+ +FR ++ + I      IA                                
Sbjct: 426 LNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCY 485

Query: 398 --------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
                   YA+  ++D +  IF ++  + + V+WN++IS F QN    +AL +F  M  E
Sbjct: 486 VESALMDMYAKCGRLDLSHYIFSKISAK-DEVTWNSMISSFAQNGEPEEALNLFREMCME 544

Query: 450 GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA 509
           G K  + T++  LSACA L A+  G++IH + IK     DLF  ++LI MY KCG ++ A
Sbjct: 545 GVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWA 604

Query: 510 ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
             +F+     + +SWNS+IA Y   G   E++ L   M  EG   D VTF+ ++SAC+H 
Sbjct: 605 HRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHA 664

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629
           G V  GL+LF CMTE Y I P +EH+ACM+DL SRAG+LD+A E++  M  KP+AGIWG 
Sbjct: 665 GQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGA 724

Query: 630 LLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689
           LL ACR+H+N++L  IA ++L +L+P  +  Y L+SN++A AGRWD V KVR  M+ +  
Sbjct: 725 LLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKV 784

Query: 690 QKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           QK PG SW++V N  H F++ D     + +I  +LK++  ++R
Sbjct: 785 QKIPGYSWVDVNNTSHLFVAADKSHPDSEDIYMSLKSILLELR 827



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 137/588 (23%), Positives = 251/588 (42%), Gaps = 83/588 (14%)

Query: 6   KSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDA 65
           +++G  G  +F  +  I      G + +A ++F  M++++ V +N M+  Y K G V+ A
Sbjct: 173 RTLGLDGD-MFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSA 231

Query: 66  RKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELE 125
            +LF  M         + +A +L     +            DLF    + T   + G LE
Sbjct: 232 VELFGDMRASGCEPNFATLACFLSVSATES-----------DLFFGVQLHTLAVKYG-LE 279

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
                        + A  N +V+ YAK    ++  KL   MP  ++V+WN M+SG  +NG
Sbjct: 280 ------------SEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNG 327

Query: 186 EMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
            +  A   F  M++     D V+   +L    +L+  +   +    I    V   V ++S
Sbjct: 328 FVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVS 387

Query: 242 G----YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER---- 293
                Y +   +  A+ ++D     +VV  + MI+ YV  G  +EA ++F  + E+    
Sbjct: 388 ALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRP 447

Query: 294 NPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIF 349
           N V+  +++     +A +   + L    L          ++A++  Y +  R+D ++ IF
Sbjct: 448 NAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIF 507

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-------------------------- 383
            KI   D V WN MI  +AQ G  +EA+NLFR+M                          
Sbjct: 508 SKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIY 567

Query: 384 -------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
                        +  D+   + +I  Y +   ++ A ++FE M   +N VSWN++I+ +
Sbjct: 568 YGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESM-PEKNEVSWNSIIASY 626

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
                  +++ +   M +EG KADH T    +SACAH   +Q G ++     +   +   
Sbjct: 627 GAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPR 686

Query: 491 FVGNS-LITMYAKCGRIQNA-ELLFKDADPVDVISWNSLIAGYAINGN 536
               + ++ +Y++ G++  A EL+       D   W +L+    ++ N
Sbjct: 687 MEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRN 734


>gi|218197313|gb|EEC79740.1| hypothetical protein OsI_21088 [Oryza sativa Indica Group]
          Length = 1068

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 245/852 (28%), Positives = 406/852 (47%), Gaps = 167/852 (19%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----R 105
           N+M+S   + G +  A ++F +MP+R++ SWN M+ GY     ++EA +L+ +M     R
Sbjct: 135 NAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMR 194

Query: 106 PDLFSWALMI-TCYT----RKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
           PD++++  ++ TC      R G    A  L     ++ D    NA+V  YAK G+   A+
Sbjct: 195 PDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVL--NALVTMYAKCGDIVAAR 252

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER-------------------- 200
           K+ D M   + +SWN+M++G+ +N E     + F  M E                     
Sbjct: 253 KVFDGMAMTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLS 312

Query: 201 -------------------DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
                              DV   N ++  Y  L  +  A K F ++  ++ +SW  M+S
Sbjct: 313 EVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMIS 372

Query: 242 GYARNGRMLEARRLFDQMP---------------------------------------IR 262
           GY +NG   +A  ++  M                                        IR
Sbjct: 373 GYEKNGFPDKALEVYALMELHNVNPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIR 432

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA----RRLL 318
            VV  NA++  Y +   I++A  +F  M E++ VSW++MI G+    +  +A    R +L
Sbjct: 433 YVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFDALYYFRYML 492

Query: 319 DQMPYKNI---------AAQTAMISG----------------YVQNKRMD------EANQ 347
             +   ++         AA  A+ SG                YV N  +D      + + 
Sbjct: 493 GHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSY 552

Query: 348 IFDKIGTH---DVVCWNVMIKGYAQCGRMDEAINLFRQMV-------------------- 384
            + +   H   DVV WN+M+ G+   G  D A++LF QM+                    
Sbjct: 553 AWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMMYTSLGRMGACSALAACACLG 612

Query: 385 -------------NKDIVTW----NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
                        NK  + +    N ++  YA+ + +D A+++F+ M ++ + VSW+++I
Sbjct: 613 RLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEK-DVVSWSSMI 671

Query: 428 SGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV 487
           +GF  N    DAL  F  M     K +  T   ALSACA   AL+ G++IH   ++ G  
Sbjct: 672 AGFCFNHRSFDALYYFRYMLGH-VKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIG 730

Query: 488 NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
           ++ +V N+L+ +Y KCG+   A   F      DV+SWN +++G+  +G    A+ LF +M
Sbjct: 731 SEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQM 790

Query: 548 VMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGR 607
           V  G  PD VTF+ ++ ACS  G+V  G +LF   TE ++I P ++HYACM+DLLSR G+
Sbjct: 791 VEMGEHPDEVTFV-LMCACSRAGMVIQGWELFHRRTEKFSIVPNLKHYACMVDLLSRVGK 849

Query: 608 LDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNM 667
           L EA+ ++  M IKP+A +WG LL  CR+H++++LG +A + + ELEP   + + LL ++
Sbjct: 850 LTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDL 909

Query: 668 HAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
           + +AG+W +V +VR +M   G ++  GCSW+EVK   H FL+ D    +  EI   L  +
Sbjct: 910 YTDAGKWAQVARVRKTMREKGLEQDNGCSWVEVKGVTHAFLTDDESHPQIKEINVVLHGI 969

Query: 728 AAQIRNTPLAVI 739
             +++    A +
Sbjct: 970 YERMKACGFAPV 981



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 166/653 (25%), Positives = 285/653 (43%), Gaps = 111/653 (16%)

Query: 110 SWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDA---- 165
           S AL   C    G+L +A  L +  P   D          Y  +    E ++ +DA    
Sbjct: 68  SAALRALC--SHGQLAQALWLLESSPEPPDEG-------AYVALFRLCEWRRAVDAGMRA 118

Query: 166 -------MPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDL 218
                   PS  +   N+MLS   + GE+  A + F  M ERDV SWN+M+ GY ++  L
Sbjct: 119 CARADAEHPSFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFL 178

Query: 219 DSAWKFFQKI------PEQNVVSWVTMLSG------------------------------ 242
           + A   + ++      P+      V    G                              
Sbjct: 179 EEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNAL 238

Query: 243 ---YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PER 293
              YA+ G ++ AR++FD M + + ++WNAMIA + +  + E    LF+ M      P  
Sbjct: 239 VTMYAKCGDIVAARKVFDGMAMTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNL 298

Query: 294 NPVSWTTMIDG---------------------------------YVRIAKLDEARRLLDQ 320
             ++  T+  G                                 Y  + ++ +A ++  +
Sbjct: 299 MTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSR 358

Query: 321 MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMI----KGYAQCGRMDEA 376
           M  K+  + TAMISGY +N   D+A +++  +  H+V   +V I       A  GR+D  
Sbjct: 359 METKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVNPDDVTIASALAACACLGRLDVG 418

Query: 377 INLFRQMVNKDIVTW----NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
           I L     NK  + +    N ++  YA+ + +D A+++F+ M + ++ VSW+++I+GF  
Sbjct: 419 IKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAE-KDVVSWSSMIAGFCF 477

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
           N    DAL  F  M     K +  T   ALSACA   AL+ G++IH   ++ G  ++ +V
Sbjct: 478 NHRSFDALYYFRYMLGH-VKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYV 536

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
            N+L+ +Y KCG+   A   F      DV+SWN +++G+  +G    A+ LF +M+   +
Sbjct: 537 PNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMMYTSL 596

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
               +     L+AC+ +G +D G+KL E       I  +V   A ++++ +++  +D+A 
Sbjct: 597 G--RMGACSALAACACLGRLDVGIKLHELAQNKGFIRYVVVANA-LLEMYAKSKHIDKAI 653

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLS 665
           E+ K M  K        + G C  H++          L  ++P   +  A LS
Sbjct: 654 EVFKFMAEKDVVSWSSMIAGFCFNHRSFDALYYFRYMLGHVKPNSVTFIAALS 706



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 93/405 (22%), Positives = 161/405 (39%), Gaps = 94/405 (23%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS  +  N  +    K G+   A   FS  S+K+ V++N M+S +  +G  + A  LF Q
Sbjct: 531 GSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQ 590

Query: 72  MPQ-------------------------------------RNLVSWNSMIAGYLHNDKVK 94
           M                                       R +V  N+++  Y  +  + 
Sbjct: 591 MMYTSLGRMGACSALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHID 650

Query: 95  EARELFDKMFRPDLFSWALMIT--CYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAK 152
           +A E+F  M   D+ SW+ MI   C+  +         + L   K ++  + A ++  A 
Sbjct: 651 KAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFDALYYFRYMLGHVKPNSVTFIAALSACAA 710

Query: 153 IGNYNEAKK-----LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL 207
            G     K+     L   + S+  V  N++L  Y K G+   A   F    E+DVVSWN+
Sbjct: 711 TGALRSGKEIHAYVLRCGIGSEGYVP-NALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNI 769

Query: 208 MLDGYVE--LDDLD--------------------------------SAWKFFQKIPEQ-- 231
           ML G+V   L D+                                   W+ F +  E+  
Sbjct: 770 MLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVLMCACSRAGMVIQGWELFHRRTEKFS 829

Query: 232 ---NVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAM-----IAAYVQRGQIEE 282
              N+  +  M+   +R G++ EA  L ++MPI+ +   W A+     I  +V+ G++  
Sbjct: 830 IVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGEL-- 887

Query: 283 AARLFIEMPERNPVSWTTMI-DGYVRIAKLDEARRLLDQMPYKNI 326
           AA++ +E+ E N V++  ++ D Y    K  +  R+   M  K +
Sbjct: 888 AAKVILEL-EPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGL 931


>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 222/757 (29%), Positives = 386/757 (50%), Gaps = 69/757 (9%)

Query: 43   QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR-----NLVSWNSMIAGYLHNDKVKEAR 97
            Q +     S+I+ Y K G +  A ++F++M +      ++  WN +I GY      +E  
Sbjct: 473  QSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGL 532

Query: 98   ELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGY 150
              F +M     RPD +S ++++    R       R++   +     + D     A++  Y
Sbjct: 533  AQFCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGMY 592

Query: 151  AKIGNYNEAKKLLDAMPSK-NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML 209
            +      EA  L   + ++ NIV+WN M+ G+ +NG    + + +   +  +    +   
Sbjct: 593  SSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASF 652

Query: 210  DGYVELDDLDSAWKFFQKIP--------EQNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
             G            F +++         + +     ++L+ YA++G + +A+++FDQ+  
Sbjct: 653  TGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLD 712

Query: 262  RNVVAWNAMIAAYVQRGQIEEAARLFIEMPE-RNPV---SWTTMIDGYVRIAKLDEAR-- 315
            + V   NAMI+A++  G+  +A  L+ +M     PV   + ++++ G   +   D  R  
Sbjct: 713  KEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTV 772

Query: 316  --RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRM 373
               ++ +    N+A Q+A+++ Y +    ++A+ +F  +   DVV W  MI G+ Q  R 
Sbjct: 773  HAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRF 832

Query: 374  DEAINLFRQM------VNKDIVT-------------WNTMIAGYAQIRQMDDAV------ 408
             +A++LFR M       + D++T                +I G+A  R ++  V      
Sbjct: 833  KDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSL 892

Query: 409  --------------KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
                           +F  M   +N V+WN++IS +  N     ++ +   + Q G   D
Sbjct: 893  VDMYSKFGFAESAEMVFSSM-PNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLD 951

Query: 455  HSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
              ++   L A + +AAL  G+ +H   I+    +DL V N+LI MY KCG ++ A+L+F+
Sbjct: 952  SVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFE 1011

Query: 515  DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574
            +    ++++WNS+IAGY  +GN  EA++LF+EM     APD VTF+ ++++CSH G+V+ 
Sbjct: 1012 NMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEE 1071

Query: 575  GLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGAC 634
            GL LF+ M   Y +EP +EHYA ++DLL RAGRLD+A+  ++GM I  +  +W  LL AC
Sbjct: 1072 GLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLFAC 1131

Query: 635  RMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPG 694
            R H+N++LG +  + L ++EP + S Y  L N++ E   WD    +R SM+G G +K PG
Sbjct: 1132 RAHRNMELGELVADNLLKMEPARGSNYVPLLNLYGEVEMWDRAANLRASMKGRGLKKSPG 1191

Query: 695  CSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
            CSWIEVKN++  F SGD    R  EI  TL +L + +
Sbjct: 1192 CSWIEVKNRVDVFFSGDSSSTRRIEIYKTLSSLKSNM 1228



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 108/443 (24%), Positives = 205/443 (46%), Gaps = 42/443 (9%)

Query: 22   ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ------- 74
            +T   KSG VE+A K+F Q+  K     N+MISA+  NGR  DA  L+ +M         
Sbjct: 691  LTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDS 750

Query: 75   ---RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
                +L+S  S++  Y     V    E+  +  + ++   + ++T Y + G  E A  +F
Sbjct: 751  FTISSLLSGCSVVGSYDFGRTVHA--EVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVF 808

Query: 132  DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG------ 185
              +  + D   W +M+AG+ +   + +A  L  AM  + + + + +++     G      
Sbjct: 809  YTMKER-DVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENV 867

Query: 186  EM-HLASKF-FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGY 243
            E+ HL   F  +   E DV     ++D Y +    +SA   F  +P +N+V+W +M+S Y
Sbjct: 868  ELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCY 927

Query: 244  ARNG----------RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
            + NG          ++L+     D + I  V+   + +AA + +G+   A ++ +++P  
Sbjct: 928  SWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALL-KGKTLHAYQIRLQIPSD 986

Query: 294  NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI- 352
              V    +ID YV+   L  A+ + + MP +N+    +MI+GY  +   +EA ++F ++ 
Sbjct: 987  LQVE-NALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMK 1045

Query: 353  ---GTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-----VNKDIVTWNTMIAGYAQIRQM 404
                  D V +  +I   +  G ++E +NLF+ M     V   +  + +++    +  ++
Sbjct: 1046 RSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRL 1105

Query: 405  DDAVKIFEEMGKRRNTVSWNALI 427
            DDA      M    +   W  L+
Sbjct: 1106 DDAYSFIRGMPIDADRSVWLCLL 1128



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 151/331 (45%), Gaps = 28/331 (8%)

Query: 18   QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
            Q+  +T   K G  E+A  +F  M +++ V + SMI+ + +N R  DA  LF  M +  +
Sbjct: 788  QSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGV 847

Query: 78   VSWNSMIAGYLHNDKVKEAREL--------FDKMFRPDLFSWALMITCYTRKGELEKARE 129
             + + ++   +      E  EL          +    D+F    ++  Y++ G  E A  
Sbjct: 848  KADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEM 907

Query: 130  LFDLLPNKEDTACWNAMVAGYAKIG----NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
            +F  +PNK   A WN+M++ Y+  G    + N   ++L      + VS  ++L   +   
Sbjct: 908  VFSSMPNKNLVA-WNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVA 966

Query: 186  EMHLASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
             + L  K   A + R     D+   N ++D YV+   L  A   F+ +P +N+V+W +M+
Sbjct: 967  AL-LKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMI 1025

Query: 241  SGYARNGRMLEARRLFDQM----PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----- 291
            +GY  +G   EA RLF +M       + V + A+I +    G +EE   LF  M      
Sbjct: 1026 AGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGV 1085

Query: 292  ERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
            E     + +++D   R  +LD+A   +  MP
Sbjct: 1086 EPRMEHYASVVDLLGRAGRLDDAYSFIRGMP 1116



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 26/211 (12%)

Query: 446 MTQEGK---------KADHSTLACA-------LSACAHLAALQLGRQIHHLAIKSGYVND 489
           + Q+GK         K  HS L  A       L  CA L+ L  GR IH   +  G  +D
Sbjct: 416 LVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGLQSD 475

Query: 490 LFVGNSLITMYAKCGRIQNAELLF------KDADPVDVISWNSLIAGYAINGNATEAIKL 543
            ++  SLI MY KCG + +A  +F      +D+ P D+  WN +I GY   G+  E +  
Sbjct: 476 PYIATSLINMYVKCGLLGSALQVFDKMSESRDSAP-DITVWNPVIDGYFKYGHFEEGLAQ 534

Query: 544 FEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE-CMTEVYAIEPLVEHYACMIDLL 602
           F  M   G+ PD  +   VL  C+ +     G ++    +  ++  +P +E    +I + 
Sbjct: 535 FCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLE--TALIGMY 592

Query: 603 SRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
           S   R  EA+ +   ++ + N   W  ++G 
Sbjct: 593 SSCSRPMEAWSLFGKLENRSNIVAWNVMIGG 623



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 9/135 (6%)

Query: 18   QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
            +N  I    K G ++ A  IF  M ++N VT+NSMI+ Y  +G   +A +LF++M +   
Sbjct: 990  ENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSET 1049

Query: 78   ----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKAR 128
                V++ ++I    H+  V+E   LF  M       P +  +A ++    R G L+ A 
Sbjct: 1050 APDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAY 1109

Query: 129  ELFDLLPNKEDTACW 143
                 +P   D + W
Sbjct: 1110 SFIRGMPIDADRSVW 1124


>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 846

 Score =  363 bits (933), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 236/739 (31%), Positives = 374/739 (50%), Gaps = 79/739 (10%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----RPD 107
           ++  Y   GR++D   LF  +   N + WN MI G         A   + KM      PD
Sbjct: 85  VLGLYVLCGRISDGGNLFFGLELCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPD 144

Query: 108 LFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNEAKKLLD 164
            +++  +I        +     + +    L    D    +A++  YA  G   +A+++ D
Sbjct: 145 KYTFPYVIKACGGLNNVPLCMVVHNTARSLGFHVDLFVGSALIKLYADNGYICDARRVFD 204

Query: 165 AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLD-----GYVEL 215
            +P ++ + WN ML GY K+G+ + A   F  M       + V++  +L      G   L
Sbjct: 205 ELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCL 264

Query: 216 DD------LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNA 269
                   + S ++F  ++         T+++ Y++ G + +AR+LF+ MP  + V WN 
Sbjct: 265 GTQVHGLVIGSGFEFDPQVAN-------TLVAMYSKCGNLFDARKLFNTMPQTDTVTWNG 317

Query: 270 MIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMI-----DGYVRIAKLDEARRLLDQ 320
           +IA YVQ G  +EAA LF  M     + + V++ + +      G +R  K   +  +  +
Sbjct: 318 LIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHR 377

Query: 321 MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF 380
           +P+ ++  ++A+I  Y +   ++ A +IF +    DV     MI GY   G   +AIN F
Sbjct: 378 VPF-DVYLKSALIDIYFKGGDVEMARKIFQQNTLVDVAVCTAMISGYVLHGLNIDAINTF 436

Query: 381 RQMVNKDIVTWNTMIAG---------------------------------------YAQI 401
           R ++ + +V  +  +A                                        YA+ 
Sbjct: 437 RWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCDILKKQLENIVNVGSAITDMYAKC 496

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
            ++D A + F  M +  +++ WN++IS F QN     A+ +F  M   G K D  +L+ A
Sbjct: 497 GRLDLAYEFFRRMSET-DSICWNSMISSFSQNGKPEMAVDLFRQMGMSGAKFDSVSLSSA 555

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           LS+ A+L AL  G+++H   I++ + +D FV ++LI MY+KCG++  A  +F      + 
Sbjct: 556 LSSAANLPALYYGKEMHGYVIRNAFSSDTFVASALIDMYSKCGKLALARCVFNLMAGKNE 615

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC 581
           +SWNS+IA Y  +G A E + LF EM+  GV PD VTF+ ++SAC H GLV  G+  F C
Sbjct: 616 VSWNSIIAAYGNHGCARECLDLFHEMLRAGVHPDHVTFLVIISACGHAGLVGEGIHYFHC 675

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIK 641
           MT  Y I   +EHYACM+DL  RAGRL EAF+ +K M   P+AG+WGTLLGACR+H N++
Sbjct: 676 MTREYGIGARMEHYACMVDLYGRAGRLHEAFDAIKSMPFTPDAGVWGTLLGACRLHGNVE 735

Query: 642 LGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVK 701
           L ++A   L EL+P+ +  Y LLSN+HA+AG W  V KVR  M+  G QK PG SWI+V 
Sbjct: 736 LAKLASRHLLELDPKNSGYYVLLSNVHADAGEWGSVLKVRRLMKEKGVQKIPGYSWIDVN 795

Query: 702 NQIHTFLSGDPKQCRTAEI 720
              H F + +     + EI
Sbjct: 796 GGTHMFSAAEGNHPESVEI 814



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 103/444 (23%), Positives = 197/444 (44%), Gaps = 38/444 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  +    K G + +A K+F+ M Q +TVT+N +I+ Y +NG  ++A  LF  M    + 
Sbjct: 285 NTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVK 344

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKAREL 130
              V++ S +   L +  ++  +E+   + R     D++  + +I  Y + G++E AR++
Sbjct: 345 PDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKI 404

Query: 131 FDLLPNKEDTACWNAMVAGYA----KIGNYNEAKKLL------DAMPSKNIVSWNSMLSG 180
           F       D A   AM++GY      I   N  + L+      +++   +++   + L+ 
Sbjct: 405 FQ-QNTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAA 463

Query: 181 YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
                E+H      +   E  V   + + D Y +   LD A++FF+++ E + + W +M+
Sbjct: 464 LKLGKELH--CDILKKQLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSETDSICWNSMI 521

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE---RNPVS 297
           S +++NG+   A  LF QM +      +  +++ +       A     EM     RN  S
Sbjct: 522 SSFSQNGKPEMAVDLFRQMGMSGAKFDSVSLSSALSSAANLPALYYGKEMHGYVIRNAFS 581

Query: 298 WTT-----MIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
             T     +ID Y +  KL  AR + + M  KN  +  ++I+ Y  +    E   +F ++
Sbjct: 582 SDTFVASALIDMYSKCGKLALARCVFNLMAGKNEVSWNSIIAAYGNHGCARECLDLFHEM 641

Query: 353 ---GTH-DVVCWNVMIKGYAQCGRMDEAINLFRQM-----VNKDIVTWNTMIAGYAQIRQ 403
              G H D V + V+I      G + E I+ F  M     +   +  +  M+  Y +  +
Sbjct: 642 LRAGVHPDHVTFLVIISACGHAGLVGEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGR 701

Query: 404 MDDAVKIFEEMGKRRNTVSWNALI 427
           + +A    + M    +   W  L+
Sbjct: 702 LHEAFDAIKSMPFTPDAGVWGTLL 725



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 14/178 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S  F  +  I    K G++  A  +F+ M+ KN V++NS+I+AY  +G   +   LF +M
Sbjct: 582 SDTFVASALIDMYSKCGKLALARCVFNLMAGKNEVSWNSIIAAYGNHGCARECLDLFHEM 641

Query: 73  PQRNL----VSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGE 123
            +  +    V++  +I+   H   V E    F  M R       +  +A M+  Y R G 
Sbjct: 642 LRAGVHPDHVTFLVIISACGHAGLVGEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGR 701

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
           L +A +    +P   D   W  ++      GN   AK     + S++++  +   SGY
Sbjct: 702 LHEAFDAIKSMPFTPDAGVWGTLLGACRLHGNVELAK-----LASRHLLELDPKNSGY 754



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 52/103 (50%)

Query: 464 ACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
           AC+  + +Q  RQ+H   I  G  +   + + ++ +Y  CGRI +   LF   +  + + 
Sbjct: 53  ACSDASVVQQARQVHTQIIVGGMSDVCALSSRVLGLYVLCGRISDGGNLFFGLELCNALP 112

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
           WN +I G  + G    A+  + +M+   V+PD  TF  V+ AC
Sbjct: 113 WNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKAC 155


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 232/778 (29%), Positives = 384/778 (49%), Gaps = 115/778 (14%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F   K +   GK G + +A+K+F +MS++   ++N+++ A+  +G+  +A +L++ M   
Sbjct: 80  FLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVL 139

Query: 76  NLVS---------------WNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTR 120
            +                   S +   +H   VK     F       +F    +I  Y +
Sbjct: 140 GVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEF-------VFVCNALIAMYGK 192

Query: 121 KGELEKARELFD-LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS------ 173
            G+L  AR LFD ++  KEDT  WN++++ +   GN  EA  L   M    + S      
Sbjct: 193 CGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFV 252

Query: 174 ---------------------------------WNSMLSGYTKNGEMHLASKFFEAMEER 200
                                             N++++ Y K G M  A + FE+M  R
Sbjct: 253 AALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCR 312

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKI------PEQNVVSWVTMLSGYARNGRMLEARR 254
           D VSWN +L G V+ +    A  +F+ +      P+Q  VS + +++   R+G +L+ + 
Sbjct: 313 DYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQ--VSVLNLIAASGRSGNLLKGKE 370

Query: 255 LFDQMPIRNVV-----AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIA 309
           +     IRN +       N ++  Y +   ++     F  M E++ +SWTT+I GY +  
Sbjct: 371 V-HAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNE 429

Query: 310 KLDEARRLLDQMPYKNIAAQTAMI-------SGYVQNKRMDEANQIFDKIGTHDVVCWNV 362
              EA  L  ++  K +     MI       SG      + E +    K    D++  N 
Sbjct: 430 FHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNA 489

Query: 363 MIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
           ++  Y + G +D A   F  + +KDIV+W +M                            
Sbjct: 490 IVNVYGEVGHIDYARRAFESIRSKDIVSWTSM---------------------------- 521

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482
               I+  + N   ++AL++F  + Q   + D   +  ALSA A+L++L+ G++IH   I
Sbjct: 522 ----ITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLI 577

Query: 483 KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIK 542
           + G+  +  + +SL+ MYA CG ++N+  +F      D+I W S+I    ++G   +AI 
Sbjct: 578 RKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIA 637

Query: 543 LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLL 602
           LF++M  + V PD +TF+ +L ACSH GL+  G + FE M   Y +EP  EHYACM+DLL
Sbjct: 638 LFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLL 697

Query: 603 SRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYA 662
           SR+  L+EA+  V+ M IKP++ IW  LLGAC +H N +LG +A ++L + + + +  YA
Sbjct: 698 SRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAAKELLQSDTENSGKYA 757

Query: 663 LLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           L+SN+ A  GRW++VE+VR+ M+G+G +K PGCSWIEV N+IHTF++ D    +T +I
Sbjct: 758 LISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDI 815



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 90/435 (20%), Positives = 185/435 (42%), Gaps = 53/435 (12%)

Query: 3   ASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRV 62
           A LKS  N  + V+  N  I    K GR+E+A ++F  M  ++ V++N+++S   +N   
Sbjct: 273 AVLKS--NHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELY 330

Query: 63  NDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKG 122
           +DA   F  M                                +PD  S   +I    R G
Sbjct: 331 SDALNYFRDMQNSGQ---------------------------KPDQVSVLNLIAASGRSG 363

Query: 123 ELEKARELFDL-LPNKEDT--ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLS 179
            L K +E+    + N  D+     N +V  YAK           + M  K+++SW ++++
Sbjct: 364 NLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIA 423

Query: 180 GYTKNGEMHL-ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPE-------Q 231
           GY +N E HL A   F  ++ + +    +M+   +       +  F ++I          
Sbjct: 424 GYAQN-EFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLA 482

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
           +++    +++ Y   G +  ARR F+ +  +++V+W +MI   V  G   EA  LF  + 
Sbjct: 483 DIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLK 542

Query: 292 ERN----PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMD 343
           + N     ++  + +     ++ L + + +   +  K    +    ++++  Y     ++
Sbjct: 543 QTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVE 602

Query: 344 EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI----VTWNTMIAGYA 399
            + ++F  +   D++ W  MI      G  ++AI LF++M ++++    +T+  ++   +
Sbjct: 603 NSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACS 662

Query: 400 QIRQMDDAVKIFEEM 414
               M +  + FE M
Sbjct: 663 HSGLMVEGKRFFEIM 677



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 77/151 (50%), Gaps = 6/151 (3%)

Query: 421 VSWNALISGFLQNEFH-LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHH 479
           +S N L  G L+  F  L  L    L T    +  HS L   L  C    AL  G+Q+H 
Sbjct: 14  ISVNTLNKGTLKPAFQSLTLLSTHPLATPSRLEHAHSLL---LDLCVAAKALPQGQQLHA 70

Query: 480 LAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATE 539
           L +KS      F+   L+ MY KCG +++A  +F +     + SWN+L+  +  +G   E
Sbjct: 71  LLLKSHL--SAFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLE 128

Query: 540 AIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
           AI+L+++M + GVA D  TF  VL AC  +G
Sbjct: 129 AIELYKDMRVLGVAIDACTFPSVLKACGALG 159


>gi|115459414|ref|NP_001053307.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|32482936|emb|CAE02340.1| OSJNBb0072M01.1 [Oryza sativa Japonica Group]
 gi|38345689|emb|CAD41109.2| OSJNBb0070J16.5 [Oryza sativa Japonica Group]
 gi|113564878|dbj|BAF15221.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|215768472|dbj|BAH00701.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218195211|gb|EEC77638.1| hypothetical protein OsI_16630 [Oryza sativa Indica Group]
          Length = 1027

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 238/783 (30%), Positives = 388/783 (49%), Gaps = 93/783 (11%)

Query: 27   KSGRVEEAIKIFSQM----SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNS 82
            + G  +EA+ +FS+M    S  + VT  ++IS  A +GR++ A  L ++MP  + V+WN+
Sbjct: 236  RVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNA 295

Query: 83   MIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTAC 142
            +I+G+  +        L+      D+ SW L  T  T    L  A  +   +  ++  A 
Sbjct: 296  VISGHAQSGLEFNVLGLYK-----DMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAA 350

Query: 143  ------------WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
                         ++++  YAK G  ++AK + D    KNIV WN+ML+G+ +N     A
Sbjct: 351  AVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEA 410

Query: 191  SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTM----------- 239
             + F+ M     + + L  D +  +  L  A  +         V  VT+           
Sbjct: 411  IRMFQYM-----MRYTLQTDEFTFVSIL-GACTYLSSFYLGKQVHCVTIKNCMDISLFVA 464

Query: 240  ---LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA----RLFIEMPE 292
               L  Y++ G + +A+ LF  +P ++ ++WNA+     Q  + EEA     R+ +    
Sbjct: 465  NATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGIT 524

Query: 293  RNPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQI 348
             + VS++T I+    I   +  +++    +      N A  +++I  Y ++  ++ + +I
Sbjct: 525  PDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKI 584

Query: 349  FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI----VTWNTMIAG------- 397
            F ++    +V  N +I G+ Q    DEAI LF+Q++   +    VT++++++G       
Sbjct: 585  FAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNS 644

Query: 398  -----------------------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
                                         Y + + ++DA K+  EM   +N   W A+IS
Sbjct: 645  AIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIIS 704

Query: 429  GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
            G+ QN +   +L  F  M     ++D +T A  L AC+ + A   G++IH L  KSG+ +
Sbjct: 705  GYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLITKSGFGS 764

Query: 489  DLFVGNSLITMYAKCGRIQNAELLFKD-ADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
                 ++LI MY+KCG + ++   FK+  +  D++ WNS+I G+A NG A EA+ LF++M
Sbjct: 765  YETATSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKM 824

Query: 548  VMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGR 607
                + PD VTF+GVL AC+H GL+  G   F  M +VY + P ++HYAC IDLL R G 
Sbjct: 825  EELQIKPDEVTFLGVLIACTHSGLISEGRHFFGSMRKVYGLTPRLDHYACFIDLLGRGGH 884

Query: 608  LDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNM 667
            L EA E +  +  +P+  +W T L ACRMH++ + G+IA  KL ELEPQ +S Y LLS++
Sbjct: 885  LQEAQEAIDQLPFRPDGVVWATYLAACRMHKDEERGKIAARKLVELEPQYSSTYVLLSSL 944

Query: 668  HAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD---PKQCRTAEICNTL 724
            HA  G W E +  R SM   G  K PGCSWI V N+   FL  D   P   R  E+   L
Sbjct: 945  HAATGNWAEAKVTRESMREKGVAKFPGCSWITVGNKTSLFLVQDKYHPDNLRIYEMLGDL 1004

Query: 725  KTL 727
              +
Sbjct: 1005 TGM 1007



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 148/579 (25%), Positives = 270/579 (46%), Gaps = 95/579 (16%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----F 104
           +S++  Y K+GRV  A        +R   + +S+++ +  +    +    F  +      
Sbjct: 95  DSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARSGSPGDVLGAFRYIRCTAGG 154

Query: 105 RPDLFSWALMITCYTRKGELEKARELF-DLLPNKEDTA--CWNAMVAGYAKIGNYNEAKK 161
           RPD F  A++++  +R G L   R++  D++ +   ++  C  A+V  YAK G+   A++
Sbjct: 155 RPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARR 214

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA 221
           + D +   + + W+SM++ Y + G    A   F  M                  D + SA
Sbjct: 215 VFDGIACPDTICWSSMIACYHRVGCYQEALALFSRM------------------DKMGSA 256

Query: 222 WKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIE 281
                  P+Q  V+ VT++S  A +GR+  A  L  +MP  + VAWNA+I+ + Q G   
Sbjct: 257 -------PDQ--VTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEF 307

Query: 282 EAARLFIEM------PERNPVSWTTMIDGYVRIAKLDEARRL--------LDQMPYKNIA 327
               L+ +M      P R+  ++ +M+     +    E +++        LD     N+ 
Sbjct: 308 NVLGLYKDMRSWGLWPTRS--TFASMLSAAANMKAFVEGQQMHAAAVMHGLD----ANVF 361

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD 387
             +++I+ Y +     +A  +FD     ++V WN M+ G+ Q    +EAI +F+ M+   
Sbjct: 362 VGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYT 421

Query: 388 IVT---------------------------------------WNTMIAGYAQIRQMDDAV 408
           + T                                        N  +  Y++   + DA 
Sbjct: 422 LQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAK 481

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
            +F  +   ++++SWNAL  G  QN    +A+ +   M   G   D  + + A++AC+++
Sbjct: 482 ALFSLI-PYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNI 540

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
            A + G+QIH LAIK G  ++  VG+SLI +Y+K G ++++  +F   D   ++  N+LI
Sbjct: 541 RATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALI 600

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
           AG+  N N  EAI+LF++++ +G+ P  VTF  +LS CS
Sbjct: 601 AGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCS 639



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 155/291 (53%), Gaps = 6/291 (2%)

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM- 383
           ++  + A++  Y +   +  A ++FD I   D +CW+ MI  Y + G   EA+ LF +M 
Sbjct: 192 SVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMD 251

Query: 384 ---VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
                 D VT  T+I+  A   ++D A  + ++M    +TV+WNA+ISG  Q+    + L
Sbjct: 252 KMGSAPDQVTLVTIISTLASSGRLDHATALLKKM-PTPSTVAWNAVISGHAQSGLEFNVL 310

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500
            ++  M   G     ST A  LSA A++ A   G+Q+H  A+  G   ++FVG+SLI +Y
Sbjct: 311 GLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLY 370

Query: 501 AKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
           AKCG   +A+ +F  +   +++ WN+++ G+  N    EAI++F+ M+   +  D  TF+
Sbjct: 371 AKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFV 430

Query: 561 GVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
            +L AC+++     G K   C+T    ++  +      +D+ S+ G + +A
Sbjct: 431 SILGACTYLSSFYLG-KQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDA 480



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 1/166 (0%)

Query: 418 RNTVSWNALISGFLQNEFHLDALKIF-VLMTQEGKKADHSTLACALSACAHLAALQLGRQ 476
           R + + ++L+S   ++    D L  F  +    G + D   LA  LSAC+ +  L  GRQ
Sbjct: 120 RASGAASSLLSCHARSGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQ 179

Query: 477 IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGN 536
           +H   +KSG+ + +F   +L+ MYAKCG + NA  +F      D I W+S+IA Y   G 
Sbjct: 180 VHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGC 239

Query: 537 ATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
             EA+ LF  M   G APD VT + ++S  +  G +D    L + M
Sbjct: 240 YQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLKKM 285



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 105/235 (44%), Gaps = 40/235 (17%)

Query: 398 YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHST 457
           YA+   + +A ++F+ +    +T+ W+++I+ + +   + +AL +F  M + G   D  T
Sbjct: 203 YAKCGDVPNARRVFDGIACP-DTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVT 261

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD 517
           L                                    ++I+  A  GR+ +A  L K   
Sbjct: 262 LV-----------------------------------TIISTLASSGRLDHATALLKKMP 286

Query: 518 PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV-GLVDGGL 576
               ++WN++I+G+A +G     + L+++M   G+ P   TF  +LSA +++   V+G  
Sbjct: 287 TPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEG-- 344

Query: 577 KLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           +       ++ ++  V   + +I+L ++ G   +A + V  +  + N  +W  +L
Sbjct: 345 QQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDA-KNVFDLSCEKNIVMWNAML 398



 Score = 48.1 bits (113), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 95/211 (45%), Gaps = 12/211 (5%)

Query: 472 QLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGY 531
           Q  R +H   ++ G      +G+SL+ +Y K GR+  A      A      + +SL++ +
Sbjct: 73  QTCRALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCH 132

Query: 532 AINGNATEAIKLFEEM-VMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP 590
           A +G+  + +  F  +    G  PD      VLSACS VG++  G ++  C         
Sbjct: 133 ARSGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQV-HCDVVKSGFSS 191

Query: 591 LVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL 650
            V   A ++D+ ++ G +  A  +  G+   P+   W +++ AC  +  +   + A+   
Sbjct: 192 SVFCEAALVDMYAKCGDVPNARRVFDGIAC-PDTICWSSMI-AC--YHRVGCYQEALALF 247

Query: 651 SELE-----PQKTSCYALLSNMHAEAGRWDE 676
           S ++     P + +   ++S + A +GR D 
Sbjct: 248 SRMDKMGSAPDQVTLVTIISTL-ASSGRLDH 277


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 203/632 (32%), Positives = 336/632 (53%), Gaps = 87/632 (13%)

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI------ 228
           +S++  Y  NG +  A +FF+ M ++D V WN+M++GYV+  + DSA K F+ +      
Sbjct: 49  SSLIKLYADNGCIEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAK 108

Query: 229 PEQNVVSWV---------------------------------TMLSGYARNGRMLEARRL 255
           P+    + V                                 T+++ Y++  ++ +AR+L
Sbjct: 109 PDSVTFACVLSISCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKL 168

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKL 311
           FD MP  ++V WN MI  YVQ G +++A+ LF EM     + + +++T+ +      + L
Sbjct: 169 FDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSL 228

Query: 312 DEARRLLDQMPYK----NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367
            + + +   +       ++   +A+I  Y + +    A ++F+     D+V +  MI GY
Sbjct: 229 KQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGY 288

Query: 368 AQCGRMDEAINLFRQMVNKDIV----TWNTMIAG-------------------------- 397
              G   +A+ +FR ++ K ++    T+++++                            
Sbjct: 289 VLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKC 348

Query: 398 ---------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
                    YA+  ++D A  IF  +   ++ + WN++I+ F Q+    +A+ +F  M  
Sbjct: 349 PVGSAIMNMYAKCGRLDLAHLIFGRI-SIKDAICWNSIITSFSQDGKPEEAIYLFRQMGM 407

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
           EG K D  T++ ALSACA++ AL  G++IH   IK  + +DLF  ++LI MYAKCG++  
Sbjct: 408 EGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKGAFESDLFDMSALINMYAKCGKLNI 467

Query: 509 AELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
           A L+F      + ++WNS+IA Y  +G   +++ LF  M+ EG+ PD +TF+ +LS+C H
Sbjct: 468 ARLVFNLMQEKNEVAWNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHITFLTILSSCGH 527

Query: 569 VGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWG 628
            G V+ G++ F CMTE Y I   +EHYACM DL  RAG LDEAFE++  M   P A +WG
Sbjct: 528 AGQVEDGVRYFRCMTEEYGIPAQMEHYACMADLFGRAGHLDEAFEVITSMPFPPAASVWG 587

Query: 629 TLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688
           TLLGACR+H N++L  +A   L +LEP+ +  Y LL+++ A+AG+W  V K++  M+  G
Sbjct: 588 TLLGACRVHGNVELAEVASRYLLDLEPKNSGYYLLLTHVLADAGKWRSVHKIQHLMKERG 647

Query: 689 AQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
            QK PGCSWIEV N    F + D     + +I
Sbjct: 648 VQKVPGCSWIEVNNTTCVFFAADGSHPESPQI 679



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 142/560 (25%), Positives = 255/560 (45%), Gaps = 75/560 (13%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----R 105
           +S+I  YA NG + DAR+ F++M  ++ V WN MI GY+   +   A +LF  M     +
Sbjct: 49  SSLIKLYADNGCIEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAK 108

Query: 106 PDLFSWALMITCYTRKGELEKAREL--------FDLLPNKEDTACWNAMVAGYAKIGNYN 157
           PD  ++A +++    +  +E  R+L         D +P        N +V  Y+K     
Sbjct: 109 PDSVTFACVLSISCSEAMVEYGRQLHGLVVRSGLDFVP-----LVGNTLVTVYSKGRQLG 163

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSWNLMLDGYV 213
           +A+KL D MP  ++V WN M+ GY +NG M  AS  F  M     + D +++   L    
Sbjct: 164 DARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLA 223

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSG----YARNGRMLEARRLFDQMPIRNVVAWNA 269
           E   L    +    I    V+  V + S     Y +    + A ++F+     ++V + A
Sbjct: 224 ESSSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTA 283

Query: 270 MIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           MI+ YV  G  ++A  +F  + ++    N +++++++     +A +   R L   +    
Sbjct: 284 MISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNE 343

Query: 326 IAAQ----TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
           +  +    +A+++ Y +  R+D A+ IF +I   D +CWN +I  ++Q G+ +EAI LFR
Sbjct: 344 LEEKCPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFR 403

Query: 382 QM----VNKDIVTWNT--------------------MIAG---------------YAQIR 402
           QM    V  D VT +                     MI G               YA+  
Sbjct: 404 QMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKGAFESDLFDMSALINMYAKCG 463

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
           +++ A  +F  M + +N V+WN++I+ +  + +  D+L +F  M +EG + DH T    L
Sbjct: 464 KLNIARLVFNLM-QEKNEVAWNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHITFLTIL 522

Query: 463 SACAHLAALQLG-RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA-ELLFKDADPVD 520
           S+C H   ++ G R    +  + G    +     +  ++ + G +  A E++     P  
Sbjct: 523 SSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYACMADLFGRAGHLDEAFEVITSMPFPPA 582

Query: 521 VISWNSLIAGYAINGNATEA 540
              W +L+    ++GN   A
Sbjct: 583 ASVWGTLLGACRVHGNVELA 602



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 67/129 (51%)

Query: 450 GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA 509
           G   D  T    +  C  L  ++LG+ I  + ++ G+  D+FV +SLI +YA  G I++A
Sbjct: 5   GVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDA 64

Query: 510 ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
              F      D + WN +I GY   G +  AIKLF++M+     PD VTF  VLS     
Sbjct: 65  RRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSE 124

Query: 570 GLVDGGLKL 578
            +V+ G +L
Sbjct: 125 AMVEYGRQL 133



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 93/208 (44%), Gaps = 17/208 (8%)

Query: 11  KGSY---VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARK 67
           KG++   +F+ +  I    K G++  A  +F+ M +KN V +NS+I+AY  +G + D+  
Sbjct: 442 KGAFESDLFDMSALINMYAKCGKLNIARLVFNLMQEKNEVAWNSIIAAYGYHGYLADSLA 501

Query: 68  LFEQMPQRNL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCY 118
           LF  M +  +    +++ ++++   H  +V++    F  M         +  +A M   +
Sbjct: 502 LFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYACMADLF 561

Query: 119 TRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA----KKLLDAMPSKNIVSW 174
            R G L++A E+   +P     + W  ++      GN   A    + LLD  P KN   +
Sbjct: 562 GRAGHLDEAFEVITSMPFPPAASVWGTLLGACRVHGNVELAEVASRYLLDLEP-KNSGYY 620

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDV 202
             +       G+     K    M+ER V
Sbjct: 621 LLLTHVLADAGKWRSVHKIQHLMKERGV 648


>gi|222629201|gb|EEE61333.1| hypothetical protein OsJ_15451 [Oryza sativa Japonica Group]
          Length = 1037

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 238/783 (30%), Positives = 388/783 (49%), Gaps = 93/783 (11%)

Query: 27   KSGRVEEAIKIFSQM----SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNS 82
            + G  +EA+ +FS+M    S  + VT  ++IS  A +GR++ A  L ++MP  + V+WN+
Sbjct: 246  RVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNA 305

Query: 83   MIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTAC 142
            +I+G+  +        L+      D+ SW L  T  T    L  A  +   +  ++  A 
Sbjct: 306  VISGHAQSGLEFNVLGLYK-----DMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAA 360

Query: 143  ------------WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
                         ++++  YAK G  ++AK + D    KNIV WN+ML+G+ +N     A
Sbjct: 361  AVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEA 420

Query: 191  SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTM----------- 239
             + F+ M     + + L  D +  +  L  A  +         V  VT+           
Sbjct: 421  IRMFQYM-----MRYTLQTDEFTFVSIL-GACTYLSSFYLGKQVHCVTIKNCMDISLFVA 474

Query: 240  ---LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA----RLFIEMPE 292
               L  Y++ G + +A+ LF  +P ++ ++WNA+     Q  + EEA     R+ +    
Sbjct: 475  NATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGIT 534

Query: 293  RNPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQI 348
             + VS++T I+    I   +  +++    +      N A  +++I  Y ++  ++ + +I
Sbjct: 535  PDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKI 594

Query: 349  FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI----VTWNTMIAG------- 397
            F ++    +V  N +I G+ Q    DEAI LF+Q++   +    VT++++++G       
Sbjct: 595  FAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNS 654

Query: 398  -----------------------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
                                         Y + + ++DA K+  EM   +N   W A+IS
Sbjct: 655  AIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIIS 714

Query: 429  GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
            G+ QN +   +L  F  M     ++D +T A  L AC+ + A   G++IH L  KSG+ +
Sbjct: 715  GYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLITKSGFGS 774

Query: 489  DLFVGNSLITMYAKCGRIQNAELLFKD-ADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
                 ++LI MY+KCG + ++   FK+  +  D++ WNS+I G+A NG A EA+ LF++M
Sbjct: 775  YETATSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKM 834

Query: 548  VMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGR 607
                + PD VTF+GVL AC+H GL+  G   F  M +VY + P ++HYAC IDLL R G 
Sbjct: 835  EELQIKPDEVTFLGVLIACTHSGLISEGRHFFGSMRKVYGLTPRLDHYACFIDLLGRGGH 894

Query: 608  LDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNM 667
            L EA E +  +  +P+  +W T L ACRMH++ + G+IA  KL ELEPQ +S Y LLS++
Sbjct: 895  LQEAQEAIDQLPFRPDGVVWATYLAACRMHKDEERGKIAARKLVELEPQYSSTYVLLSSL 954

Query: 668  HAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD---PKQCRTAEICNTL 724
            HA  G W E +  R SM   G  K PGCSWI V N+   FL  D   P   R  E+   L
Sbjct: 955  HAATGNWAEAKVTRESMREKGVAKFPGCSWITVGNKTSLFLVQDKYHPDNLRIYEMLGDL 1014

Query: 725  KTL 727
              +
Sbjct: 1015 TGM 1017



 Score =  194 bits (493), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 148/579 (25%), Positives = 270/579 (46%), Gaps = 95/579 (16%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----F 104
           +S++  Y K+GRV  A        +R   + +S+++ +  +    +    F  +      
Sbjct: 105 DSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARSGSPGDVLGAFRYIRCTAGG 164

Query: 105 RPDLFSWALMITCYTRKGELEKARELF-DLLPNKEDTA--CWNAMVAGYAKIGNYNEAKK 161
           RPD F  A++++  +R G L   R++  D++ +   ++  C  A+V  YAK G+   A++
Sbjct: 165 RPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARR 224

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA 221
           + D +   + + W+SM++ Y + G    A   F  M                  D + SA
Sbjct: 225 VFDGIACPDTICWSSMIACYHRVGCYQEALALFSRM------------------DKMGSA 266

Query: 222 WKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIE 281
                  P+Q  V+ VT++S  A +GR+  A  L  +MP  + VAWNA+I+ + Q G   
Sbjct: 267 -------PDQ--VTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEF 317

Query: 282 EAARLFIEM------PERNPVSWTTMIDGYVRIAKLDEARRL--------LDQMPYKNIA 327
               L+ +M      P R+  ++ +M+     +    E +++        LD     N+ 
Sbjct: 318 NVLGLYKDMRSWGLWPTRS--TFASMLSAAANMKAFVEGQQMHAAAVMHGLD----ANVF 371

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD 387
             +++I+ Y +     +A  +FD     ++V WN M+ G+ Q    +EAI +F+ M+   
Sbjct: 372 VGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYT 431

Query: 388 IVT---------------------------------------WNTMIAGYAQIRQMDDAV 408
           + T                                        N  +  Y++   + DA 
Sbjct: 432 LQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAK 491

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
            +F  +   ++++SWNAL  G  QN    +A+ +   M   G   D  + + A++AC+++
Sbjct: 492 ALFSLI-PYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNI 550

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
            A + G+QIH LAIK G  ++  VG+SLI +Y+K G ++++  +F   D   ++  N+LI
Sbjct: 551 RATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALI 610

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
           AG+  N N  EAI+LF++++ +G+ P  VTF  +LS CS
Sbjct: 611 AGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCS 649



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 155/292 (53%), Gaps = 6/292 (2%)

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
            ++  + A++  Y +   +  A ++FD I   D +CW+ MI  Y + G   EA+ LF +M
Sbjct: 201 SSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRM 260

Query: 384 ----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDA 439
                  D VT  T+I+  A   ++D A  + ++M    +TV+WNA+ISG  Q+    + 
Sbjct: 261 DKMGSAPDQVTLVTIISTLASSGRLDHATALLKKM-PTPSTVAWNAVISGHAQSGLEFNV 319

Query: 440 LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
           L ++  M   G     ST A  LSA A++ A   G+Q+H  A+  G   ++FVG+SLI +
Sbjct: 320 LGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINL 379

Query: 500 YAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTF 559
           YAKCG   +A+ +F  +   +++ WN+++ G+  N    EAI++F+ M+   +  D  TF
Sbjct: 380 YAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTF 439

Query: 560 IGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
           + +L AC+++     G K   C+T    ++  +      +D+ S+ G + +A
Sbjct: 440 VSILGACTYLSSFYLG-KQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDA 490



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 1/166 (0%)

Query: 418 RNTVSWNALISGFLQNEFHLDALKIF-VLMTQEGKKADHSTLACALSACAHLAALQLGRQ 476
           R + + ++L+S   ++    D L  F  +    G + D   LA  LSAC+ +  L  GRQ
Sbjct: 130 RASGAASSLLSCHARSGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQ 189

Query: 477 IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGN 536
           +H   +KSG+ + +F   +L+ MYAKCG + NA  +F      D I W+S+IA Y   G 
Sbjct: 190 VHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGC 249

Query: 537 ATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
             EA+ LF  M   G APD VT + ++S  +  G +D    L + M
Sbjct: 250 YQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLKKM 295



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 105/235 (44%), Gaps = 40/235 (17%)

Query: 398 YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHST 457
           YA+   + +A ++F+ +    +T+ W+++I+ + +   + +AL +F  M + G   D  T
Sbjct: 213 YAKCGDVPNARRVFDGIACP-DTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVT 271

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD 517
           L                                    ++I+  A  GR+ +A  L K   
Sbjct: 272 LV-----------------------------------TIISTLASSGRLDHATALLKKMP 296

Query: 518 PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV-GLVDGGL 576
               ++WN++I+G+A +G     + L+++M   G+ P   TF  +LSA +++   V+G  
Sbjct: 297 TPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEG-- 354

Query: 577 KLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           +       ++ ++  V   + +I+L ++ G   +A + V  +  + N  +W  +L
Sbjct: 355 QQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDA-KNVFDLSCEKNIVMWNAML 408



 Score = 48.1 bits (113), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 95/211 (45%), Gaps = 12/211 (5%)

Query: 472 QLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGY 531
           Q  R +H   ++ G      +G+SL+ +Y K GR+  A      A      + +SL++ +
Sbjct: 83  QTCRALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCH 142

Query: 532 AINGNATEAIKLFEEM-VMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP 590
           A +G+  + +  F  +    G  PD      VLSACS VG++  G ++  C         
Sbjct: 143 ARSGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQV-HCDVVKSGFSS 201

Query: 591 LVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL 650
            V   A ++D+ ++ G +  A  +  G+   P+   W +++ AC  +  +   + A+   
Sbjct: 202 SVFCEAALVDMYAKCGDVPNARRVFDGIAC-PDTICWSSMI-AC--YHRVGCYQEALALF 257

Query: 651 SELE-----PQKTSCYALLSNMHAEAGRWDE 676
           S ++     P + +   ++S + A +GR D 
Sbjct: 258 SRMDKMGSAPDQVTLVTIISTL-ASSGRLDH 287


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 197/571 (34%), Positives = 325/571 (56%), Gaps = 43/571 (7%)

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI----PE 230
           NS+++ Y KN  +  A K F+ M ERDV+SWN +++GYV     +     F ++     E
Sbjct: 83  NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIE 142

Query: 231 QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA-----WNAMIAAYVQRGQIEEAAR 285
            ++ + V++ +G A + R++   R    + ++   +      N ++  Y + G ++ A  
Sbjct: 143 IDLATIVSVFAGCA-DSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKA 201

Query: 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKR 341
           +F EM +R+ VS+T+MI GY R     EA +L ++M  + I+      TA+++   + + 
Sbjct: 202 VFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRL 261

Query: 342 MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQI 401
           +DE  ++ + I  +D+        G+                   DI   N ++  YA+ 
Sbjct: 262 LDEGKRVHEWIKENDL--------GF-------------------DIFVSNALMDMYAKC 294

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK-KADHSTLAC 460
             M +A  +F EM + ++ +SWN +I G+ +N +  +AL +F L+ +E +   D  T+AC
Sbjct: 295 GSMQEAELVFSEM-RVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVAC 353

Query: 461 ALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVD 520
            L ACA L+A   GR+IH   +++GY +D  V NSL+ MYAKCG +  A +LF D    D
Sbjct: 354 VLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKD 413

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE 580
           ++SW  +IAGY ++G   EAI LF +M   G+  D ++F+ +L ACSH GLVD G + F 
Sbjct: 414 LVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFN 473

Query: 581 CMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNI 640
            M     IEP VEHYAC++D+L+R G L +A+  ++ M I P+A IWG LL  CR+H ++
Sbjct: 474 IMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDV 533

Query: 641 KLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEV 700
           KL     EK+ ELEP+ T  Y L++N++AEA +W++V+++R  +   G +K PGCSWIE+
Sbjct: 534 KLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEI 593

Query: 701 KNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           K +++ F++GD     T  I   L+ + A++
Sbjct: 594 KGRVNIFVAGDSSNPETENIEAFLRKVRARM 624



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 181/371 (48%), Gaps = 49/371 (13%)

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKL 311
           FD++ I   + WN ++    + G    +  LF +M     E +  +++ +   +  +  +
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 312 DEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367
               +L    L     +  +   ++++ Y++N+R+D A ++FD++   DV+ WN +I GY
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 368 AQCGRMDEAINLFRQM----VNKDIVT--------------------------------- 390
              G  ++ +++F QM    +  D+ T                                 
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 180

Query: 391 --WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
              NT++  Y++   +D A  +F EM   R+ VS+ ++I+G+ +     +A+K+F  M +
Sbjct: 181 RFCNTLLDMYSKCGDLDSAKAVFREMSD-RSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 239

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
           EG   D  T+   L+ CA    L  G+++H    ++    D+FV N+L+ MYAKCG +Q 
Sbjct: 240 EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQE 299

Query: 509 AELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG-VAPDPVTFIGVLSACS 567
           AEL+F +    D+ISWN++I GY+ N  A EA+ LF  ++ E   +PD  T   VL AC+
Sbjct: 300 AELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACA 359

Query: 568 HVGLVDGGLKL 578
            +   D G ++
Sbjct: 360 SLSAFDKGREI 370



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 201/405 (49%), Gaps = 31/405 (7%)

Query: 39  SQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARE 98
           S   ++N+V  NS+++ Y KN RV+ ARK+F++M +R+++SWNS+I GY+ N   ++   
Sbjct: 73  SGFGERNSVG-NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLS 131

Query: 99  LFDKMFRPDL-FSWALMITCY-----TRKGELEKARELFDLLP--NKEDTACWNAMVAGY 150
           +F +M    +    A +++ +     +R   L +A     +    ++ED  C N ++  Y
Sbjct: 132 VFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFC-NTLLDMY 190

Query: 151 AKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWN 206
           +K G+ + AK +   M  +++VS+ SM++GY + G    A K FE MEE     DV +  
Sbjct: 191 SKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVT 250

Query: 207 LMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARNGRMLEARRLFDQMPIR 262
            +L+       LD   +  + I E     ++     ++  YA+ G M EA  +F +M ++
Sbjct: 251 AVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVK 310

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLF---IEMPERNPVSWTT--MIDGYVRIAKLDEARR- 316
           ++++WN +I  Y +     EA  LF   +E    +P   T   ++     ++  D+ R  
Sbjct: 311 DIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREI 370

Query: 317 ---LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRM 373
              ++    + +     +++  Y +   +  A+ +FD I + D+V W VMI GY   G  
Sbjct: 371 HGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFG 430

Query: 374 DEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            EAI LF QM    +  D +++ +++   +    +D+  + F  M
Sbjct: 431 KEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIM 475



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 151/340 (44%), Gaps = 46/340 (13%)

Query: 4   SLKSIGNKGSYVFNQ---NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
           ++ SIG K  +       N  +    K G ++ A  +F +MS ++ V+Y SMI+ YA+ G
Sbjct: 166 AVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREG 225

Query: 61  RVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTR 120
              +A KLFE+M +  +                            PD+++   ++ C  R
Sbjct: 226 LAGEAVKLFEEMEEEGI---------------------------SPDVYTVTAVLNCCAR 258

Query: 121 KGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSM 177
              L++ + + + +   +   D    NA++  YAK G+  EA+ +   M  K+I+SWN++
Sbjct: 259 YRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTI 318

Query: 178 LSGYTKNGEMHLASKFFEAMEERDVVSWN-----LMLDGYVELDDLDSAWKFFQKIPEQN 232
           + GY+KN   + A   F  + E    S +      +L     L   D   +    I    
Sbjct: 319 IGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNG 378

Query: 233 VVS----WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFI 288
             S      +++  YA+ G +L A  LFD +  +++V+W  MIA Y   G  +EA  LF 
Sbjct: 379 YFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFN 438

Query: 289 EMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
           +M     E + +S+ +++        +DE  R  + M ++
Sbjct: 439 QMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHE 478



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 91/385 (23%), Positives = 158/385 (41%), Gaps = 62/385 (16%)

Query: 2   KASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKN------TVT------- 48
           KA  + + ++   V +    I    + G   EA+K+F +M ++       TVT       
Sbjct: 200 KAVFREMSDRS--VVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCA 257

Query: 49  --------------------------YNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNS 82
                                      N+++  YAK G + +A  +F +M  ++++SWN+
Sbjct: 258 RYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNT 317

Query: 83  MIAGYLHNDKVKEARELF-----DKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
           +I GY  N    EA  LF     +K F PD  + A ++         +K RE+   +   
Sbjct: 318 IIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRN 377

Query: 138 ---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
               D    N++V  YAK G    A  L D + SK++VSW  M++GY  +G    A   F
Sbjct: 378 GYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALF 437

Query: 195 EAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-----EQNVVSWVTMLSGYAR 245
             M     E D +S+  +L        +D  W+FF  +      E  V  +  ++   AR
Sbjct: 438 NQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLAR 497

Query: 246 NGRMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTTM 301
            G +++A R  + MPI  +   W A++        +   E+ A    E+   N   +  M
Sbjct: 498 TGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLM 557

Query: 302 IDGYVRIAKLDEARRLLDQMPYKNI 326
            + Y    K ++ +RL  ++  + +
Sbjct: 558 ANIYAEAEKWEQVKRLRKRIGQRGL 582



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 118/250 (47%), Gaps = 8/250 (3%)

Query: 411 FEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAA 470
           F+E+ K    + WN L++   ++     ++ +F  M   G + D  T +C   + + L +
Sbjct: 1   FDEV-KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRS 59

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
           +  G Q+H   +KSG+     VGNSL+  Y K  R+ +A  +F +    DVISWNS+I G
Sbjct: 60  VHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING 119

Query: 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP 590
           Y  NG A + + +F +M++ G+  D  T + V + C+   L+  G  +      V A   
Sbjct: 120 YVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHS--IGVKACFS 177

Query: 591 LVEHYA-CMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649
             + +   ++D+ S+ G LD A  + + M  +        + G  R      L   AV+ 
Sbjct: 178 REDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYARE----GLAGEAVKL 233

Query: 650 LSELEPQKTS 659
             E+E +  S
Sbjct: 234 FEEMEEEGIS 243


>gi|116310835|emb|CAH67622.1| OSIGBa0140J09.3 [Oryza sativa Indica Group]
          Length = 1027

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 238/783 (30%), Positives = 388/783 (49%), Gaps = 93/783 (11%)

Query: 27   KSGRVEEAIKIFSQM----SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNS 82
            + G  +EA+ +FS+M    S  + VT  ++IS  A +GR++ A  L ++MP  + V+WN+
Sbjct: 236  RVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNA 295

Query: 83   MIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTAC 142
            +I+G+  +        L+      D+ SW L  T  T    L  A  +   +  ++  A 
Sbjct: 296  VISGHAQSGLEFNVLGLYK-----DMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAA 350

Query: 143  ------------WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
                         ++++  YAK G  ++AK + D    KNIV WN+ML+G+ +N     A
Sbjct: 351  AVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEA 410

Query: 191  SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTM----------- 239
             + F+ M     + + L  D +  +  L  A  +         V  VT+           
Sbjct: 411  IRMFQYM-----MRYTLQTDEFTFVSIL-GACTYLSSFYLGKQVHCVTIKNCMDISLFVA 464

Query: 240  ---LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA----RLFIEMPE 292
               L  Y++ G + +A+ LF  +P ++ ++WNA+     Q  + EEA     R+ +    
Sbjct: 465  NATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGIT 524

Query: 293  RNPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQI 348
             + VS++T I+    I   +  +++    +      N A  +++I  Y ++  ++ + +I
Sbjct: 525  PDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKI 584

Query: 349  FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI----VTWNTMIAG------- 397
            F ++    +V  N +I G+ Q    DEAI LF+Q++   +    VT++++++G       
Sbjct: 585  FAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNS 644

Query: 398  -----------------------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
                                         Y + + ++DA K+  EM   +N   W A+IS
Sbjct: 645  AIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIIS 704

Query: 429  GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
            G+ QN +   +L  F  M     ++D +T A  L AC+ + A   G++IH L  KSG+ +
Sbjct: 705  GYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLITKSGFGS 764

Query: 489  DLFVGNSLITMYAKCGRIQNAELLFKD-ADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
                 ++LI MY+KCG + ++   FK+  +  D++ WNS+I G+A NG A EA+ LF++M
Sbjct: 765  YETATSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKM 824

Query: 548  VMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGR 607
                + PD VTF+GVL AC+H GL+  G   F  M +VY + P ++HYAC IDLL R G 
Sbjct: 825  EELQIKPDEVTFLGVLIACTHSGLISEGRHFFGPMRKVYGLTPRLDHYACFIDLLGRGGH 884

Query: 608  LDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNM 667
            L EA E +  +  +P+  +W T L ACRMH++ + G+IA  KL ELEPQ +S Y LLS++
Sbjct: 885  LQEAQEAIDQLPFRPDGVVWATYLAACRMHKDEERGKIAARKLVELEPQYSSTYVLLSSL 944

Query: 668  HAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD---PKQCRTAEICNTL 724
            HA  G W E +  R SM   G  K PGCSWI V N+   FL  D   P   R  E+   L
Sbjct: 945  HAATGNWAEAKVTRESMREKGVAKFPGCSWITVGNKTSLFLVQDKYHPDNLRIYEMLGDL 1004

Query: 725  KTL 727
              +
Sbjct: 1005 TGM 1007



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 148/579 (25%), Positives = 270/579 (46%), Gaps = 95/579 (16%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----F 104
           +S++  Y K+GRV  A        +R   + +S+++ +  +    +    F  +      
Sbjct: 95  DSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARSGSPGDVLGAFRYIRCTAGG 154

Query: 105 RPDLFSWALMITCYTRKGELEKARELF-DLLPNKEDTA--CWNAMVAGYAKIGNYNEAKK 161
           RPD F  A++++  +R G L   R++  D++ +   ++  C  A+V  YAK G+   A++
Sbjct: 155 RPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARR 214

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA 221
           + D +   + + W+SM++ Y + G    A   F  M                  D + SA
Sbjct: 215 VFDGIACPDTICWSSMIACYHRVGCYQEALALFSRM------------------DKMGSA 256

Query: 222 WKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIE 281
                  P+Q  V+ VT++S  A +GR+  A  L  +MP  + VAWNA+I+ + Q G   
Sbjct: 257 -------PDQ--VTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEF 307

Query: 282 EAARLFIEM------PERNPVSWTTMIDGYVRIAKLDEARRL--------LDQMPYKNIA 327
               L+ +M      P R+  ++ +M+     +    E +++        LD     N+ 
Sbjct: 308 NVLGLYKDMRSWGLWPTRS--TFASMLSAAANMKAFVEGQQMHAAAVMHGLD----ANVF 361

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD 387
             +++I+ Y +     +A  +FD     ++V WN M+ G+ Q    +EAI +F+ M+   
Sbjct: 362 VGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYT 421

Query: 388 IVT---------------------------------------WNTMIAGYAQIRQMDDAV 408
           + T                                        N  +  Y++   + DA 
Sbjct: 422 LQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAK 481

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
            +F  +   ++++SWNAL  G  QN    +A+ +   M   G   D  + + A++AC+++
Sbjct: 482 ALFSLI-PYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNI 540

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
            A + G+QIH LAIK G  ++  VG+SLI +Y+K G ++++  +F   D   ++  N+LI
Sbjct: 541 RATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALI 600

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
           AG+  N N  EAI+LF++++ +G+ P  VTF  +LS CS
Sbjct: 601 AGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCS 639



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 155/291 (53%), Gaps = 6/291 (2%)

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM- 383
           ++  + A++  Y +   +  A ++FD I   D +CW+ MI  Y + G   EA+ LF +M 
Sbjct: 192 SVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMD 251

Query: 384 ---VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
                 D VT  T+I+  A   ++D A  + ++M    +TV+WNA+ISG  Q+    + L
Sbjct: 252 KMGSAPDQVTLVTIISTLASSGRLDHATALLKKM-PTPSTVAWNAVISGHAQSGLEFNVL 310

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500
            ++  M   G     ST A  LSA A++ A   G+Q+H  A+  G   ++FVG+SLI +Y
Sbjct: 311 GLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLY 370

Query: 501 AKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
           AKCG   +A+ +F  +   +++ WN+++ G+  N    EAI++F+ M+   +  D  TF+
Sbjct: 371 AKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFV 430

Query: 561 GVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
            +L AC+++     G K   C+T    ++  +      +D+ S+ G + +A
Sbjct: 431 SILGACTYLSSFYLG-KQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDA 480



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 1/166 (0%)

Query: 418 RNTVSWNALISGFLQNEFHLDALKIF-VLMTQEGKKADHSTLACALSACAHLAALQLGRQ 476
           R + + ++L+S   ++    D L  F  +    G + D   LA  LSAC+ +  L  GRQ
Sbjct: 120 RASGAASSLLSCHARSGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQ 179

Query: 477 IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGN 536
           +H   +KSG+ + +F   +L+ MYAKCG + NA  +F      D I W+S+IA Y   G 
Sbjct: 180 VHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGC 239

Query: 537 ATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
             EA+ LF  M   G APD VT + ++S  +  G +D    L + M
Sbjct: 240 YQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLKKM 285



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/235 (20%), Positives = 105/235 (44%), Gaps = 40/235 (17%)

Query: 398 YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHST 457
           YA+   + +A ++F+ +    +T+ W+++I+ + +   + +AL +F  M + G   D  T
Sbjct: 203 YAKCGDVPNARRVFDGIACP-DTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVT 261

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD 517
           L                                    ++I+  A  GR+ +A  L K   
Sbjct: 262 LV-----------------------------------TIISTLASSGRLDHATALLKKMP 286

Query: 518 PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV-GLVDGGL 576
               ++WN++I+G+A +G     + L+++M   G+ P   TF  +LSA +++   V+G  
Sbjct: 287 TPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEG-- 344

Query: 577 KLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           +       ++ ++  V   + +I+L ++ G   +A + V  +  + N  +W  +L
Sbjct: 345 QQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDA-KNVFDLSCEKNIVMWNAML 398



 Score = 48.1 bits (113), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 95/211 (45%), Gaps = 12/211 (5%)

Query: 472 QLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGY 531
           Q  R +H   ++ G      +G+SL+ +Y K GR+  A      A      + +SL++ +
Sbjct: 73  QTCRALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCH 132

Query: 532 AINGNATEAIKLFEEM-VMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP 590
           A +G+  + +  F  +    G  PD      VLSACS VG++  G ++  C         
Sbjct: 133 ARSGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQV-HCDVVKSGFSS 191

Query: 591 LVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL 650
            V   A ++D+ ++ G +  A  +  G+   P+   W +++ AC  +  +   + A+   
Sbjct: 192 SVFCEAALVDMYAKCGDVPNARRVFDGIAC-PDTICWSSMI-AC--YHRVGCYQEALALF 247

Query: 651 SELE-----PQKTSCYALLSNMHAEAGRWDE 676
           S ++     P + +   ++S + A +GR D 
Sbjct: 248 SRMDKMGSAPDQVTLVTIISTL-ASSGRLDH 277


>gi|2245038|emb|CAB10457.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268435|emb|CAB80955.1| hypothetical protein [Arabidopsis thaliana]
          Length = 851

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 177/473 (37%), Positives = 284/473 (60%), Gaps = 32/473 (6%)

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ-RGQIEEAARLFIEMPERNPVSWTTMID 303
           R+G +  A R+F  M  +N + WN+++    +   ++ EA +LF E+PE +  S+  M+ 
Sbjct: 73  RSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLS 132

Query: 304 GYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVM 363
            YVR    ++A+   D+MP+K+ A+   MI+GY +   M++A ++F  +   + V WN M
Sbjct: 133 CYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNAM 192

Query: 364 IKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
           I GY +CG +++A + F+    + +V W  MI GY + ++++ A  +F++M   +N V+W
Sbjct: 193 ISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTW 252

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
           NA+ISG+++N    D LK+F  M +EG + + S L+ AL  C                  
Sbjct: 253 NAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCTL---------------- 296

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
                      SLI+MY KCG + +A  LF+     DV++WN++I+GYA +GNA +A+ L
Sbjct: 297 ----------TSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCL 346

Query: 544 FEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLS 603
           F EM+   + PD +TF+ VL AC+H GLV+ G+  FE M   Y +EP  +HY CM+DLL 
Sbjct: 347 FREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLG 406

Query: 604 RAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYAL 663
           RAG+L+EA ++++ M  +P+A ++GTLLGACR+H+N++L   A EKL +L  Q  + Y  
Sbjct: 407 RAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQ 466

Query: 664 LSNMHAEAGRWDEVEKVRVSMEGSGA-----QKQPGCSWIEVKNQIHTFLSGD 711
           L+N++A   RW++V +VR  M+ S        K PG SWIE++N++H F S D
Sbjct: 467 LANIYASKNRWEDVARVRKRMKESNVVKVERVKVPGYSWIEIRNKVHHFRSSD 519



 Score =  202 bits (513), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 128/447 (28%), Positives = 228/447 (51%), Gaps = 61/447 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKN-GRVNDARKLFEQMP 73
           +F  NK I +  +SG ++ A+++F  M  KNT+T+NS++   +K+  R+ +A +LF+++P
Sbjct: 61  IFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIP 120

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDL 133
           + +  S+N M++ Y+ N   ++A+  FD+M   D  SW  MIT Y R+GE+EKARELF  
Sbjct: 121 EPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYS 180

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
           +  K + + WNAM++GY + G+  +A       P + +V+W +M++GY K  ++ LA   
Sbjct: 181 MMEKNEVS-WNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAM 239

Query: 194 FEAME-ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV-------------VSWVTM 239
           F+ M   +++V+WN M+ GYVE    +   K F+ + E+ +              +  ++
Sbjct: 240 FKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCTLTSL 299

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------P-- 291
           +S Y + G + +A +LF+ M  ++VVAWNAMI+ Y Q G  ++A  LF EM      P  
Sbjct: 300 ISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDW 359

Query: 292 --------------------------------ERNPVSWTTMIDGYVRIAKLDEARRLLD 319
                                           E  P  +T M+D   R  KL+EA +L+ 
Sbjct: 360 ITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIR 419

Query: 320 QMPYKNIAAQTAMISGYVQNKRMDE----ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
            MP++  AA    + G  +  +  E    A +   ++ + +   +  +   YA   R ++
Sbjct: 420 SMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWED 479

Query: 376 AINLFRQMVNKDIVTWNTM-IAGYAQI 401
              + ++M   ++V    + + GY+ I
Sbjct: 480 VARVRKRMKESNVVKVERVKVPGYSWI 506



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 105/303 (34%), Positives = 165/303 (54%), Gaps = 15/303 (4%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN-GEMHLASKFFEAMEERDV 202
           N ++A   + G+ + A ++   M +KN ++WNS+L G +K+   M  A + F+ + E D 
Sbjct: 65  NKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDT 124

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR 262
            S+N+ML  YV   + + A  FF ++P ++  SW TM++GYAR G M +AR LF  M  +
Sbjct: 125 FSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEK 184

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
           N V+WNAMI+ Y++ G +E+A+  F   P R  V+WT MI GY++  K++ A  +   M 
Sbjct: 185 NEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMT 244

Query: 323 Y-KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV-------------VCWNVMIKGYA 368
             KN+    AMISGYV+N R ++  ++F  +    +                  +I  Y 
Sbjct: 245 VNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCTLTSLISMYC 304

Query: 369 QCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
           +CG + +A  LF  M  KD+V WN MI+GYAQ    D A+ +F EM   +    W   ++
Sbjct: 305 KCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVA 364

Query: 429 GFL 431
             L
Sbjct: 365 VLL 367



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/447 (25%), Positives = 210/447 (46%), Gaps = 56/447 (12%)

Query: 5   LKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND 64
           L+SIGN  + +       +       +  +  +     Q      N +I+   ++G ++ 
Sbjct: 20  LRSIGNPDTILVESCSSSSCSSPEPSLVRSDYLTKPSDQDQIFPLNKIIARCVRSGDIDG 79

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHN-DKVKEARELFDKMFRPDLFSWALMITCYTRKGE 123
           A ++F  M  +N ++WNS++ G   +  ++ EA +LFD++  P                 
Sbjct: 80  ALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEP----------------- 122

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK 183
                          DT  +N M++ Y +  N+ +A+   D MP K+  SWN+M++GY +
Sbjct: 123 ---------------DTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYAR 167

Query: 184 NGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGY 243
            GEM  A + F +M E++ VSWN M+ GY+E  DL+ A  FF+  P + VV+W  M++GY
Sbjct: 168 RGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGY 227

Query: 244 ARNGRMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN-------- 294
            +  ++  A  +F  M + +N+V WNAMI+ YV+  + E+  +LF  M E          
Sbjct: 228 MKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGL 287

Query: 295 -----PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF 349
                  + T++I  Y +  +L +A +L + M  K++ A  AMISGY Q+   D+A  +F
Sbjct: 288 SSALLGCTLTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLF 347

Query: 350 ----DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT-----WNTMIAGYAQ 400
               D     D + +  ++      G ++  +  F  MV    V      +  M+    +
Sbjct: 348 REMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGR 407

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALI 427
             ++++A+K+   M  R +   +  L+
Sbjct: 408 AGKLEEALKLIRSMPFRPHAAVFGTLL 434



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 163/323 (50%), Gaps = 47/323 (14%)

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARN-GRMLEARRLF 256
           ++  +   N ++   V   D+D A + F  +  +N ++W ++L G +++  RM+EA +LF
Sbjct: 57  DQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLF 116

Query: 257 DQMP--------------IRNV-----------------VAWNAMIAAYVQRGQIEEAAR 285
           D++P              +RNV                  +WN MI  Y +RG++E+A  
Sbjct: 117 DEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARE 176

Query: 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
           LF  M E+N VSW  MI GY+    L++A       P + + A TAMI+GY++ K+++ A
Sbjct: 177 LFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELA 236

Query: 346 NQIF-DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI-------------VTW 391
             +F D     ++V WN MI GY +  R ++ + LFR M+ + I              T 
Sbjct: 237 EAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCTL 296

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
            ++I+ Y +  ++ DA K+FE M K+++ V+WNA+ISG+ Q+     AL +F  M     
Sbjct: 297 TSLISMYCKCGELGDAWKLFEVM-KKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKI 355

Query: 452 KADHSTLACALSACAHLAALQLG 474
           + D  T    L AC H   + +G
Sbjct: 356 RPDWITFVAVLLACNHAGLVNIG 378


>gi|242084292|ref|XP_002442571.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
 gi|241943264|gb|EES16409.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
          Length = 698

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 218/657 (33%), Positives = 334/657 (50%), Gaps = 82/657 (12%)

Query: 143 WNAMVAGYAKIG---NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE 199
           WN ++  Y+  G       A+++ D +P  + VSWNS+L+ +   G    A +  + M  
Sbjct: 29  WNQLLTAYSASGPGSGLAAARRVFDEIPRPDAVSWNSLLAAHVAAGAHRDAWRLLKDMHA 88

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIPE--------QNVVSWVTMLSGYARNGRMLE 251
           R + +    L   +         +   ++           NV S   +L  YA+ GR+ +
Sbjct: 89  RGLTASTFALGSALRSAAAARRPELGAQLQSFAVKSGLVDNVFSASALLDVYAKCGRLSD 148

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PE-----------RN 294
           ARR+FD MP+RN V+WNA+IA Y +  +  +A  LF+EM      P+             
Sbjct: 149 ARRVFDGMPVRNTVSWNALIAGYAESRKPAQAMELFLEMQRVELVPDDATFAALLATVEG 208

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
           P  ++ M   + +IAK   A  L+            A I+ Y Q     ++ +IFD I +
Sbjct: 209 PSWYSLMQQLHGKIAKYGSALGLV---------VLNAAITAYSQCGAFADSRRIFDGIQS 259

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQM-----VNKDIVTW------------------ 391
            D++ WN M+  YA  G  DEA+  F +M     V  D+ ++                  
Sbjct: 260 RDLISWNSMLGAYAYHGMDDEAMRFFVRMMRESGVQPDMYSFTSVVSVCSEHGCDDRQGR 319

Query: 392 ------------------NTMIAGYAQIRQ---MDDAVKIFEEMGKRRNTVSWNALISGF 430
                             N MIA Y +  +   M+DA K F+ +   ++ VSWN++++G+
Sbjct: 320 SIHSLVVKIGLEGVTHVCNAMIAMYTRFTENCMMEDAYKCFDSL-VFKDAVSWNSMLTGY 378

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
             +    DAL+ F  M  E    D   L+ AL +C+ LA L+LGRQ+H L I+SG+ ++ 
Sbjct: 379 SHHGLSSDALRFFRFMRAENVSTDEFALSAALRSCSDLAVLRLGRQVHSLVIQSGFSSND 438

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME 550
           FV +SLI MY+KCG + +A   F++AD    + WNS++ GYA +G A     LF EM+  
Sbjct: 439 FVSSSLIFMYSKCGMVGDARKSFEEADKGSSVPWNSMMFGYAQHGQAQTVTDLFSEMLDH 498

Query: 551 GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDE 610
            V  D VTF+ +L+A SH GLVD G ++   M   Y I   +EHYAC +DL  RAG+LD+
Sbjct: 499 KVPLDHVTFVALLTAYSHGGLVDEGSEILNSMETRYKIPLRMEHYACGVDLYGRAGQLDK 558

Query: 611 AFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAE 670
           A E+++ M  +P+A +W TLLGACR+H N++L       L   EP++ S Y LLS+M++ 
Sbjct: 559 AKELIESMPFQPDAMVWMTLLGACRIHGNMELASDVASHLFVAEPRQHSTYVLLSSMYSG 618

Query: 671 AGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
            G W +   V+  M+  G  K PG SWIEVKN++H+F + D    R  EI + L+ L
Sbjct: 619 RGMWSDRATVQKVMKNRGLSKVPGWSWIEVKNEVHSFNADDRSHPRMDEIFDMLRML 675



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 108/405 (26%), Positives = 195/405 (48%), Gaps = 32/405 (7%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           N  + ++++  YAK GR++DAR++F+ MP RN VSWN++IAGY  + K  +A ELF +M 
Sbjct: 129 NVFSASALLDVYAKCGRLSDARRVFDGMPVRNTVSWNALIAGYAESRKPAQAMELFLEMQ 188

Query: 105 R----PDLFSWALMITCYTRKGELEKARELFDLLPNKEDT---ACWNAMVAGYAKIGNYN 157
           R    PD  ++A ++            ++L   +            NA +  Y++ G + 
Sbjct: 189 RVELVPDDATFAALLATVEGPSWYSLMQQLHGKIAKYGSALGLVVLNAAITAYSQCGAFA 248

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF-----EAMEERDVVSWNLMLDGY 212
           +++++ D + S++++SWNSML  Y  +G    A +FF     E+  + D+ S+  ++   
Sbjct: 249 DSRRIFDGIQSRDLISWNSMLGAYAYHGMDDEAMRFFVRMMRESGVQPDMYSFTSVVSVC 308

Query: 213 VE--LDDLD--SAWKFFQKIPEQNVV----SWVTMLSGYARNGRMLEARRLFDQMPIRNV 264
            E   DD    S      KI  + V     + + M + +  N  M +A + FD +  ++ 
Sbjct: 309 SEHGCDDRQGRSIHSLVVKIGLEGVTHVCNAMIAMYTRFTENCMMEDAYKCFDSLVFKDA 368

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVR----IAKLDEARR---L 317
           V+WN+M+  Y   G   +A R F  M   N  +    +   +R    +A L   R+   L
Sbjct: 369 VSWNSMLTGYSHHGLSSDALRFFRFMRAENVSTDEFALSAALRSCSDLAVLRLGRQVHSL 428

Query: 318 LDQMPY-KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
           + Q  +  N    +++I  Y +   + +A + F++      V WN M+ GYAQ G+    
Sbjct: 429 VIQSGFSSNDFVSSSLIFMYSKCGMVGDARKSFEEADKGSSVPWNSMMFGYAQHGQAQTV 488

Query: 377 INLFRQMVNK----DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
            +LF +M++     D VT+  ++  Y+    +D+  +I   M  R
Sbjct: 489 TDLFSEMLDHKVPLDHVTFVALLTAYSHGGLVDEGSEILNSMETR 533



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 134/595 (22%), Positives = 251/595 (42%), Gaps = 114/595 (19%)

Query: 19  NKKITQLGKSGR---VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           N+ +T    SG    +  A ++F ++ + + V++NS+++A+   G   DA +L + M  R
Sbjct: 30  NQLLTAYSASGPGSGLAAARRVFDEIPRPDAVSWNSLLAAHVAAGAHRDAWRLLKDMHAR 89

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKM--------FRPDLFSWALMITCYTRKGELEKA 127
            L +    +   L +       EL  ++           ++FS + ++  Y + G L  A
Sbjct: 90  GLTASTFALGSALRSAAAARRPELGAQLQSFAVKSGLVDNVFSASALLDVYAKCGRLSDA 149

Query: 128 RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV--------------- 172
           R +FD +P + +T  WNA++AGYA+     +A +L   M    +V               
Sbjct: 150 RRVFDGMPVR-NTVSWNALIAGYAESRKPAQAMELFLEMQRVELVPDDATFAALLATVEG 208

Query: 173 -SW-----------------------NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLM 208
            SW                       N+ ++ Y++ G    + + F+ ++ RD++SWN M
Sbjct: 209 PSWYSLMQQLHGKIAKYGSALGLVVLNAAITAYSQCGAFADSRRIFDGIQSRDLISWNSM 268

Query: 209 LDGYVELDDLDSAWKFFQKIPEQNVV--------SWVTMLSGYA---RNGRMLEARRLFD 257
           L  Y      D A +FF ++  ++ V        S V++ S +    R GR + +  L  
Sbjct: 269 LGAYAYHGMDDEAMRFFVRMMRESGVQPDMYSFTSVVSVCSEHGCDDRQGRSIHS--LVV 326

Query: 258 QMPIRNVV-AWNAMIAAYVQRGQ---IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDE 313
           ++ +  V    NAMIA Y +  +   +E+A + F  +  ++ VSW +M+ GY       +
Sbjct: 327 KIGLEGVTHVCNAMIAMYTRFTENCMMEDAYKCFDSLVFKDAVSWNSMLTGYSHHGLSSD 386

Query: 314 ARRLLDQMPYKNIAAQTAMISGYVQN---------KRMDEANQIFDKIGTHDVVCWNVMI 364
           A R    M  +N++     +S  +++          R   +  I     ++D V  + +I
Sbjct: 387 ALRFFRFMRAENVSTDEFALSAALRSCSDLAVLRLGRQVHSLVIQSGFSSNDFVS-SSLI 445

Query: 365 KGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
             Y++CG + +A   F +      V WN+M+ GYAQ  Q      +F EM          
Sbjct: 446 FMYSKCGMVGDARKSFEEADKGSSVPWNSMMFGYAQHGQAQTVTDLFSEM---------- 495

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
                 L ++  L                DH T    L+A +H   +  G +I + ++++
Sbjct: 496 ------LDHKVPL----------------DHVTFVALLTAYSHGGLVDEGSEILN-SMET 532

Query: 485 GYVNDLFVGNSL--ITMYAKCGRIQNA-ELLFKDADPVDVISWNSLIAGYAINGN 536
            Y   L + +    + +Y + G++  A EL+       D + W +L+    I+GN
Sbjct: 533 RYKIPLRMEHYACGVDLYGRAGQLDKAKELIESMPFQPDAMVWMTLLGACRIHGN 587


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 215/648 (33%), Positives = 334/648 (51%), Gaps = 91/648 (14%)

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA--WKFFQKIPEQN 232
           NS+++ Y K   +  A   FE ++ +DVVSWN +++GY +     S+   + FQ++  +N
Sbjct: 44  NSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAEN 103

Query: 233 VVSWVTMLSGY---------ARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEA 283
                   +G          A  GR+  A  +      R+V   ++++  Y + G   EA
Sbjct: 104 TAPNAHTFAGVFTAASTLVDAAGGRLAHAVAI-KMDSCRDVFVGSSLMNMYCKAGLTPEA 162

Query: 284 ARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM---------------------- 321
            ++F  MPERN VSW TMI GY       EA  L   M                      
Sbjct: 163 RKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLP 222

Query: 322 ------------PYKN-----IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMI 364
                         KN     ++   A+++ Y +   +D+A Q F+     + + W+ MI
Sbjct: 223 ELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMI 282

Query: 365 KGYAQCGRMDEAINLFRQM---------------------------------------VN 385
            GYAQ G  D+A+ LF  M                                         
Sbjct: 283 TGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFE 342

Query: 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVL 445
             I     ++  YA+   + DA K F+ + +  + V W ++I G++QN  + DAL ++  
Sbjct: 343 SQIYVMTALVDMYAKCSSIVDARKGFDYL-QEPDIVLWTSMIGGYVQNGENEDALSLYGR 401

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
           M  EG   +  T+A  L AC+ LAAL+ G+QIH   +K G+  ++ +G++L TMYAKCG 
Sbjct: 402 MEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGC 461

Query: 506 IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565
           +++  L+F+     DVISWN++I+G + NG   EA++LFEEM +EG  PD VTF+ +LSA
Sbjct: 462 LKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSA 521

Query: 566 CSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAG 625
           CSH+GLV+ G   F  M + + ++P VEHYACM+D+LSRAG+L EA E  +   I     
Sbjct: 522 CSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTESATIDHGMC 581

Query: 626 IWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685
           +W  +LGACR ++N +LG  A EKL EL  Q++S Y LLS++++  GRW++VE+VR  M+
Sbjct: 582 LWRIILGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSSIYSALGRWEDVERVRRMMK 641

Query: 686 GSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
             G  K+PGCSWIE+K+ +H F+  D    +  +I   L+ L+ Q+++
Sbjct: 642 LRGVSKEPGCSWIELKSGVHVFVVKDQMHPQIGDIHVELRQLSKQMKD 689



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 129/493 (26%), Positives = 226/493 (45%), Gaps = 73/493 (14%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEAR--ELFDKM---- 103
           NS+++ YAK  R+ +A+ +FE++  +++VSWN +I GY  +     +   ELF +M    
Sbjct: 44  NSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAEN 103

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAG-----YAKIGNYNE 158
             P+  ++A + T  +   +    R L   +  K D+ C +  V       Y K G   E
Sbjct: 104 TAPNAHTFAGVFTAASTLVDAAGGR-LAHAVAIKMDS-CRDVFVGSSLMNMYCKAGLTPE 161

Query: 159 AKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME-----ERDVVSWNLMLDGYV 213
           A+K+ D MP +N VSW +M+SGY        A   F  M      E + V  +++    +
Sbjct: 162 ARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVL--SAL 219

Query: 214 ELDDLDSAWKFFQKIPEQN-VVSWVT----MLSGYARNGRMLEARRLFDQMPIRNVVAWN 268
            L +L +  K    I  +N ++S V+    +++ YA+ G + +A + F+    +N + W+
Sbjct: 220 TLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWS 279

Query: 269 AMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
           AMI  Y Q G  ++A +LF  M       +  ++  +I+    +    E +++ D +   
Sbjct: 280 AMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKL 339

Query: 325 NIAAQ----TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF 380
              +Q    TA++  Y +   + +A + FD +   D+V W  MI GY Q G  ++A++L+
Sbjct: 340 GFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLY 399

Query: 381 RQMVNKDIVTWNTMIAG---------------------------------------YAQI 401
            +M  + I+     +A                                        YA+ 
Sbjct: 400 GRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKC 459

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
             + D   +F  M  R + +SWNA+ISG  QN    +AL++F  M  EG K D+ T    
Sbjct: 460 GCLKDGTLVFRRMPAR-DVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNI 518

Query: 462 LSACAHLAALQLG 474
           LSAC+H+  ++ G
Sbjct: 519 LSACSHMGLVERG 531



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 192/406 (47%), Gaps = 40/406 (9%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL 88
           GR+  A+ I    S ++    +S+++ Y K G   +ARK+F+ MP+RN VSW +MI+GY 
Sbjct: 127 GRLAHAVAI-KMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYA 185

Query: 89  HNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTAC------ 142
                 EA  LF  M R +      + T       +  A  L +L+ N +   C      
Sbjct: 186 SQKLAAEALGLFRLMRREEEGENEFVFT------SVLSALTLPELVNNGKQIHCIAVKNG 239

Query: 143 -------WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
                   NA+V  YAK G+ ++A +  +    KN ++W++M++GY ++G+   A K F 
Sbjct: 240 LLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFS 299

Query: 196 AMEERDVVSWNLMLDGYVE-LDDLDSAWK------FFQKIP-EQNVVSWVTMLSGYARNG 247
           +M    +        G +    DL +AW+      +  K+  E  +     ++  YA+  
Sbjct: 300 SMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCS 359

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMID 303
            +++AR+ FD +   ++V W +MI  YVQ G+ E+A  L+  M       N ++  +++ 
Sbjct: 360 SIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLK 419

Query: 304 GYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
               +A L++ +++  +        +    +A+ + Y +   + +   +F ++   DV+ 
Sbjct: 420 ACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVIS 479

Query: 360 WNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQI 401
           WN MI G +Q G   EA+ LF +M       D VT+  +++  + +
Sbjct: 480 WNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHM 525



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 187/410 (45%), Gaps = 49/410 (11%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  +  +    K+G   EA K+F  M ++N+V++ +MIS YA      +A  LF  M +
Sbjct: 143 VFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRR 202

Query: 75  ----RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWA----LMITCYTRKGELEK 126
                N   + S+++     + V   +++     +  L S       ++T Y + G L+ 
Sbjct: 203 EEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDD 262

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           A + F+   +K ++  W+AM+ GYA+ G+ ++A KL  +M    I       S +T  G 
Sbjct: 263 ALQTFETSSDK-NSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRP-----SEFTFVGV 316

Query: 187 MHLASKFFEAMEERDVVSWNL-------------MLDGYVELDDLDSAWKFFQKIPEQNV 233
           ++  S    A E + V  + L             ++D Y +   +  A K F  + E ++
Sbjct: 317 INACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDI 376

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIR----------NVVAWNAMIAAYVQRGQIEEA 283
           V W +M+ GY +NG   +A  L+ +M +           +V+   + +AA  Q  QI   
Sbjct: 377 VLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHAR 436

Query: 284 ARLF---IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340
              +   +E+P  + +S  TM   Y +   L +   +  +MP +++ +  AMISG  QN 
Sbjct: 437 TVKYGFGLEVPIGSALS--TM---YAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNG 491

Query: 341 RMDEANQIFDKI---GTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
              EA ++F+++   GT  D V +  ++   +  G ++     FR M ++
Sbjct: 492 CGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDE 541



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/338 (18%), Positives = 136/338 (40%), Gaps = 53/338 (15%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S ++     +    K   + +A K F  + + + V + SMI  Y +NG   DA  L+ +M
Sbjct: 343 SQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRM 402

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL-- 130
               ++                           P+  + A ++   +    LE+ +++  
Sbjct: 403 EMEGIL---------------------------PNELTMASVLKACSSLAALEQGKQIHA 435

Query: 131 ------FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
                 F L     +    +A+   YAK G   +   +   MP+++++SWN+M+SG ++N
Sbjct: 436 RTVKYGFGL-----EVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQN 490

Query: 185 GEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ-----NVVS 235
           G    A + FE M+    + D V++  +L     +  ++  W +F+ + ++      V  
Sbjct: 491 GCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEH 550

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQIE---EAARLFIEMP 291
           +  M+   +R G++ EA    +   I   +  W  ++ A       E    A    +E+ 
Sbjct: 551 YACMVDILSRAGKLKEAIEFTESATIDHGMCLWRIILGACRNYRNYELGAYAGEKLMELG 610

Query: 292 ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
            +   ++  +   Y  + + ++  R+   M  + ++ +
Sbjct: 611 SQESSAYVLLSSIYSALGRWEDVERVRRMMKLRGVSKE 648


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 225/686 (32%), Positives = 359/686 (52%), Gaps = 81/686 (11%)

Query: 93  VKEARELFDKMFRPDLFS---WA--LMITCYTRKGELEKARELFDLLPNKEDTACWNAMV 147
           +++ R+    +    L S   W   L+I C            +F   P+  D + ++ M+
Sbjct: 14  IRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSP-DASVYSCML 72

Query: 148 AGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL 207
             Y+++G +N+   L     S N+     +     K     LA K           S NL
Sbjct: 73  KYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIK-----LAGK-----------SGNL 116

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
                ++L  +D    F +            +L  YA+NG++  AR LF+QM  R +  W
Sbjct: 117 FHAYVLKLGHIDD--HFIRN----------AILDMYAKNGQVDLARNLFEQMAERTLADW 164

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
           N+MI+   + G   EA  LF  MP RN ++WT+M+ GY ++  L+ ARR  D+MP +++ 
Sbjct: 165 NSMISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVV 224

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIG----THDVVCWNVMIKG----------------- 366
           +  AM S Y Q +   EA  +F ++     T D   W V I                   
Sbjct: 225 SWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMI 284

Query: 367 ------------------YAQCGRMDEAINLFRQM-VNKDIVTWNTMIAGYAQIRQMDDA 407
                             +A+ G ++ A N+F ++   ++ VTWN MI+ Y ++ ++  A
Sbjct: 285 DQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLA 344

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV-LMTQEGKKADHSTLACALSACA 466
            ++F+ M KR + VSWN++I+G+ QN     ++++F  +++    + D  T+A  LSAC 
Sbjct: 345 RELFDNMPKR-DVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACG 403

Query: 467 HLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNS 526
           H+ AL+L   +  +  +      +   NSLI MY+KCG + +A  +F+     DV+S+N+
Sbjct: 404 HIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNT 463

Query: 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVY 586
           LI+G+A NG+  EAIKL   M  EG+ PD VT+IGVL+ACSH GL++ G  +F+ +    
Sbjct: 464 LISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQA-- 521

Query: 587 AIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIA 646
              P V+HYACM+DLL RAG LDEA  +++ M +KP+AG++G+LL A R+H+ + LG +A
Sbjct: 522 ---PTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELA 578

Query: 647 VEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHT 706
             KL ELEPQ    Y LLSN++A  GRW++V++VR  M+  G +K  G SW+E K Q+H 
Sbjct: 579 ASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHK 638

Query: 707 FLSGDPKQCRTAEICNTLKTLAAQIR 732
           F  GD    ++ +I   L  L  +++
Sbjct: 639 FTVGDRSHEQSKDIYKLLAELERKMK 664



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 144/500 (28%), Positives = 248/500 (49%), Gaps = 29/500 (5%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           IF+     +   Y+ M+  Y++ G  N    LF+     NL      +  YL     K  
Sbjct: 56  IFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRP-QPFVYIYLIKLAGKSG 114

Query: 97  RELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAK 152
                 + +     D F    ++  Y + G+++ AR LF+ +  +   A WN+M++G  K
Sbjct: 115 NLFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERT-LADWNSMISGCWK 173

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY 212
            GN  EA  L + MP++NI++W SM++GY K G++  A ++F+ M ER VVSWN M   Y
Sbjct: 174 SGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAY 233

Query: 213 VELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEAR---RLFDQMPI-RNV 264
            + +    A   F ++ E+ +     +WV  +S  +  G    A    R+ DQ  I  N 
Sbjct: 234 AQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNS 293

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEM-PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
               A++  + + G +E A  +F E+  +RN V+W  MI  Y R+ KL  AR L D MP 
Sbjct: 294 FVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPK 353

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIF-DKIGTHDVVCWNVMIKG-YAQCGRMDE------ 375
           +++ +  +MI+GY QN     + ++F + I   D+    V I    + CG +        
Sbjct: 354 RDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYW 413

Query: 376 AINLFRQM-VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
            +++ R+  +   I  +N++I  Y++   + DA +IF+ MG  R+ VS+N LISGF  N 
Sbjct: 414 VLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGT-RDVVSFNTLISGFAANG 472

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN 494
              +A+K+ + M +EG + DH T    L+AC+H   L  G+ +   +I++  V+      
Sbjct: 473 HGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFK-SIQAPTVDHY---A 528

Query: 495 SLITMYAKCGRIQNAELLFK 514
            ++ +  + G +  A++L +
Sbjct: 529 CMVDLLGRAGELDEAKMLIQ 548



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 196/420 (46%), Gaps = 52/420 (12%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F +N  +    K+G+V+ A  +F QM+++    +NSMIS   K+G   +A  LF  MP R
Sbjct: 131 FIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPAR 190

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           N+++W SM+ GY     ++ AR  FD+M    + SW  M + Y +K   ++A  LF  + 
Sbjct: 191 NIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQML 250

Query: 136 NK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV----SWNSMLSGYTKNGEMH 188
            +    D   W   ++  + IG+   A  +L  +  K+IV       ++L  + K G + 
Sbjct: 251 EEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLE 310

Query: 189 LASKFFEAM-EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
           +A   F+ +  +R+ V+WN+M+  Y  +  L  A + F  +P+++VVSW +M++GYA+NG
Sbjct: 311 IARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNG 370

Query: 248 RMLEARRLF-----------DQMPIRNVVA-----------------------------W 267
               +  LF           D++ I +V++                             +
Sbjct: 371 ESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGF 430

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI- 326
           N++I  Y + G + +A R+F  M  R+ VS+ T+I G+       EA +L+  M  + I 
Sbjct: 431 NSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIE 490

Query: 327 ---AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
                   +++       ++E   +F  I    V  +  M+    + G +DEA  L + M
Sbjct: 491 PDHVTYIGVLTACSHAGLLNEGKNVFKSIQAPTVDHYACMVDLLGRAGELDEAKMLIQSM 550


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 204/627 (32%), Positives = 327/627 (52%), Gaps = 81/627 (12%)

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
           LP+   T   N ++  Y K G +  A+++ DA P  N+ ++N++LS       +      
Sbjct: 35  LPHPPPTHLLNHLLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSL 94

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI--------PEQNVVSWVTMLSG--- 242
           F +M +RD VS+N ++ G+        A + +  +        P +  +S + M +    
Sbjct: 95  FASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALG 154

Query: 243 ------------------------------YARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
                                         YA+ G + +A+R+FD+M  +NVV +N MI 
Sbjct: 155 DRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMIT 214

Query: 273 AYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT-- 330
             ++   +EEA RLF  M +R+ ++WTTM+ G+ +     +A     +M ++ IA     
Sbjct: 215 GLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYT 274

Query: 331 --AMISGYVQNKRMDEANQIFDK-IGTH---DVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
             ++++       +++  QI    I TH   +V   + ++  Y++C  +  A   FR+M 
Sbjct: 275 FGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMS 334

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
            K+I++W  +I GY Q    ++AV++F E                               
Sbjct: 335 CKNIISWTALIVGYGQNGCSEEAVRVFSE------------------------------- 363

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG 504
            M ++G   D  TL   +S+CA+LA+L+ G Q H LA+ SG ++ + V N+L+T+Y KCG
Sbjct: 364 -MQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCG 422

Query: 505 RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLS 564
            I++A  LF +    D +SW +L+ GYA  G A E I LFE+M+ + V PD VTFIGVLS
Sbjct: 423 SIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLS 482

Query: 565 ACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNA 624
           ACS  G V+ G   F  M + + I P+ +HY CMIDL SR+GRL EA E +K M + P+A
Sbjct: 483 ACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDA 542

Query: 625 GIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSM 684
             WGTLL ACR+  ++++G+ A E L E++PQ  + Y LL +MHA  G W++V ++R  M
Sbjct: 543 IGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGM 602

Query: 685 EGSGAQKQPGCSWIEVKNQIHTFLSGD 711
                +K+PGCSWI+ KN++H F + D
Sbjct: 603 RDRQVKKEPGCSWIKYKNKVHIFSADD 629



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/463 (25%), Positives = 209/463 (45%), Gaps = 60/463 (12%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +T  GK+GR   A ++F      N  TYN+++S  A    ++D   LF  M QR+ V
Sbjct: 45  NHLLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQRDTV 104

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMF------RPDLFSWALMITCYTRKGELEKAREL-- 130
           S+N++IAG+        A  L+  +       RP   + + M+   +  G+    R+   
Sbjct: 105 SYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHC 164

Query: 131 -FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
               L    +    + +V  YAK+G   +AK++ D M  KN+V +N+M++G  +   +  
Sbjct: 165 QILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEE 224

Query: 190 ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ------------------ 231
           A + FE M +RD ++W  M+ G+ +      A  FF+++  Q                  
Sbjct: 225 ARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGA 284

Query: 232 ---------------------NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAM 270
                                NV     ++  Y++   +  A   F +M  +N+++W A+
Sbjct: 285 LSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTAL 344

Query: 271 IAAYVQRGQIEEAARLFIEMPER--NPVSWT--TMIDGYVRIAKLDEARRL----LDQMP 322
           I  Y Q G  EEA R+F EM     +P  +T  ++I     +A L+E  +     L    
Sbjct: 345 IVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGL 404

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
              I    A+++ Y +   +++A+++FD++  HD V W  ++ GYAQ GR  E I+LF +
Sbjct: 405 MHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEK 464

Query: 383 MVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
           M+ KD+    VT+  +++  ++   ++     F  M K    V
Sbjct: 465 MLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIV 507



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 178/401 (44%), Gaps = 38/401 (9%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G   F  +  +    K G + +A ++F +M  KN V YN+MI+   +   V +AR+LFE 
Sbjct: 172 GVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEV 231

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKA 127
           M  R+ ++W +M+ G+  N    +A   F +M       D +++  ++T       LE+ 
Sbjct: 232 MTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQG 291

Query: 128 RELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
           +++   +      ++    +A+V  Y+K  +   A+     M  KNI+SW +++ GY +N
Sbjct: 292 KQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQN 351

Query: 185 GEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT-- 238
           G    A + F  M+    + D  +   ++     L  L+   +F        ++ ++T  
Sbjct: 352 GCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVS 411

Query: 239 --MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
             +++ Y + G + +A RLFD+M   + V+W A++  Y Q G+ +E   LF +M  ++  
Sbjct: 412 NALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKD-- 469

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHD 356
                 DG   I  L    R          A        Y  + + D      D      
Sbjct: 470 ---VKPDGVTFIGVLSACSR----------AGFVEKGCSYFHSMQKDHGIVPIDDH---- 512

Query: 357 VVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIA 396
              +  MI  Y++ GR+ EA    +QM ++ D + W T+++
Sbjct: 513 ---YTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLS 550


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  361 bits (927), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 209/646 (32%), Positives = 345/646 (53%), Gaps = 57/646 (8%)

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLD-AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
           D    NA+VA Y   G  ++A+++ D A   +N VSWN ++S Y KN +   A + F  M
Sbjct: 41  DVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 100

Query: 198 EERDV----VSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRM 249
               +      ++ +++      ++D+  +    +     E++V +   ++  Y + GR+
Sbjct: 101 VWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRV 160

Query: 250 LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRI- 308
             A  +F++MP  +VV+WNA+I+  V  G    A  L ++M     V    M+   ++  
Sbjct: 161 DIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKAC 220

Query: 309 ---AKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIGTHDVVCWN 361
                 D  R++   M   N  +       ++  Y +N  +D+A ++FD +   D++ WN
Sbjct: 221 AGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWN 280

Query: 362 VMIKGYAQCGRMDEAINLFRQM------VNK----------------------------- 386
            +I G +  GR DEA ++F  +      VN+                             
Sbjct: 281 ALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKI 340

Query: 387 ----DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI 442
               D    N +I  Y +   + DA+++FEE     + ++  ++I+   Q +    A+K+
Sbjct: 341 GFIFDAHVVNGLIDSYWKCSCLSDAIRVFEEC-SSGDIIAVTSMITALSQCDHGEGAIKL 399

Query: 443 FVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
           F+ M ++G + D   L+  L+ACA L+A + G+Q+H   IK  +++D F GN+L+  YAK
Sbjct: 400 FMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAK 459

Query: 503 CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
           CG I++AEL F       V+SW+++I G A +G+   A++LF  MV EG+ P+ +T   V
Sbjct: 460 CGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSV 519

Query: 563 LSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKP 622
           L AC+H GLVD   + F  M E++ I+   EHY+CMIDLL RAG+LD+A E+V  M  + 
Sbjct: 520 LCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQA 579

Query: 623 NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRV 682
           NA +WG LLGA R+H++ +LG++A EKL  LEP+K+  + LL+N +A +G W+EV KVR 
Sbjct: 580 NASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRK 639

Query: 683 SMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLA 728
            M+ S  +K+P  SW+EVK+++HTF+ GD     T EI + L  L 
Sbjct: 640 LMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELG 685



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 121/515 (23%), Positives = 223/515 (43%), Gaps = 87/515 (16%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQM-SQKNTVTYNSMISAYAKNGRVNDARKLFE 70
           GS VF  N  +   G  G +++A ++F +  S++N V++N ++SAY KN +  DA ++F 
Sbjct: 39  GSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFG 98

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
           +M       W+ +                     +P  F ++ ++   T    ++  R++
Sbjct: 99  EM------VWSGI---------------------QPTEFGFSCVVNACTGSRNIDAGRQV 131

Query: 131 FDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
             ++     ++D    NA+V  Y K+G  + A  + + MP  ++VSWN+++SG   NG  
Sbjct: 132 HAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD 191

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI--------PEQNVVSWVTM 239
           H A +    M+   +V    ML   ++      A+   ++I         + +    V +
Sbjct: 192 HRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGL 251

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM-PERNPVSW 298
           +  YA+N  + +A ++FD M  R+++ WNA+I+     G+ +EA  +F  +  E   V+ 
Sbjct: 252 VDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNR 311

Query: 299 TTMIDGYVRIAKLD--EARRLLDQMPYK-----NIAAQTAMISGYVQNKRMDEANQIFDK 351
           TT+       A L+   A R +  +  K     +      +I  Y +   + +A ++F++
Sbjct: 312 TTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEE 371

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK------------------------- 386
             + D++    MI   +QC   + AI LF +M+ K                         
Sbjct: 372 CSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQG 431

Query: 387 --------------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
                         D    N ++  YA+   ++DA   F  +   R  VSW+A+I G  Q
Sbjct: 432 KQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSL-PERGVVSWSAMIGGLAQ 490

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
           +     AL++F  M  EG   +H T+   L AC H
Sbjct: 491 HGHGKRALELFGRMVDEGINPNHITMTSVLCACNH 525



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 192/402 (47%), Gaps = 33/402 (8%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           +K+  T N+++  Y K GRV+ A  +FE+MP  ++VSWN++I+G + N     A EL  +
Sbjct: 141 EKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQ 200

Query: 103 M----FRPDLFSWALMITCYTRKGELEKAREL--FDLLPNKE-DTACWNAMVAGYAKIGN 155
           M      P++F  + ++      G  +  R++  F +  N + D      +V  YAK   
Sbjct: 201 MKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHF 260

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDG 211
            ++A K+ D M  ++++ WN+++SG +  G    A   F  + +  +     +   +L  
Sbjct: 261 LDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKS 320

Query: 212 YVELDDLDSAWKFFQKIPEQ-------NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV 264
              L +  SA +    + E+       +VV+   ++  Y +   + +A R+F++    ++
Sbjct: 321 TASL-EAASATRQVHALAEKIGFIFDAHVVN--GLIDSYWKCSCLSDAIRVFEECSSGDI 377

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARR---- 316
           +A  +MI A  Q    E A +LF+EM     E +P   +++++    ++  ++ ++    
Sbjct: 378 IAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAH 437

Query: 317 LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
           L+ +    +  A  A++  Y +   +++A   F  +    VV W+ MI G AQ G    A
Sbjct: 438 LIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRA 497

Query: 377 INLFRQMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEM 414
           + LF +MV++ I    +T  +++        +D+A + F  M
Sbjct: 498 LELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSM 539



 Score = 86.7 bits (213), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 95/178 (53%), Gaps = 11/178 (6%)

Query: 472 QLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA-DPVDVISWNSLIAG 530
           QLG Q+H +A+ +G+ +D+FV N+L+ MY   G + +A  +F +A    + +SWN L++ 
Sbjct: 24  QLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSA 83

Query: 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP 590
           Y  N    +AI++F EMV  G+ P    F  V++AC+    +D G ++   M      E 
Sbjct: 84  YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQV-HAMVVRMGYEK 142

Query: 591 LVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGI--WGTLLGACRM----HQNIKL 642
            V     ++D+  + GR+D A  + + M   P++ +  W  L+  C +    H+ I+L
Sbjct: 143 DVFTANALVDMYVKMGRVDIASVIFEKM---PDSDVVSWNALISGCVLNGHDHRAIEL 197



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 78/161 (48%), Gaps = 14/161 (8%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S  F  N  +    K G +E+A   FS + ++  V++++MI   A++G    A +LF +M
Sbjct: 445 SDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRM 504

Query: 73  PQR----NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFS-------WALMITCYTRK 121
                  N ++  S++    H   V EA+  F+ M   ++F        ++ MI    R 
Sbjct: 505 VDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSM--KEMFGIDRTEEHYSCMIDLLGRA 562

Query: 122 GELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKL 162
           G+L+ A EL + +P + + + W A++ G +++    E  KL
Sbjct: 563 GKLDDAMELVNSMPFQANASVWGALL-GASRVHKDPELGKL 602


>gi|356528388|ref|XP_003532785.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Glycine max]
          Length = 721

 Score =  361 bits (926), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 197/557 (35%), Positives = 310/557 (55%), Gaps = 43/557 (7%)

Query: 218 LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR 277
           LD A   F +IP  +V  +  ML  YA+N R+ EA  LF ++P ++VV+WN++I   +  
Sbjct: 71  LDEARAIFDQIPTPHVSLYTIMLHAYAQNHRLREAIDLFRRIPFKDVVSWNSIIKGCLHC 130

Query: 278 GQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM-PY-KNIAAQTAMISG 335
           G I  A +LF EMP R  VSWTT++DG +R+  + EA  L   M P  +++AA  AMI G
Sbjct: 131 GDIVTARKLFDEMPRRTVVSWTTLVDGLLRLGIVQEAETLFWAMEPMDRDVAAWNAMIHG 190

Query: 336 YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT----- 390
           Y  N R+D+A Q+F ++ + DV+ W+ MI G    G+ ++A+ LFR MV   +       
Sbjct: 191 YCSNGRVDDALQLFCQMPSRDVISWSSMIAGLDHNGKSEQALVLFRDMVASGVCLSSGVL 250

Query: 391 ----------------------------WN-------TMIAGYAQIRQMDDAVKIFEEMG 415
                                       W+       +++  YA  +QM+ A ++F E+ 
Sbjct: 251 VCGLSAAAKIPAWRVGIQIHCSVFKLGDWHFDEFVSASLVTFYAGCKQMEAACRVFGEV- 309

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
             ++ V W AL++G+  N+ H +AL++F  M +     + S+   AL++C  L  ++ G+
Sbjct: 310 VYKSVVIWTALLTGYGLNDKHREALEVFGEMMRIDVVPNESSFTSALNSCCGLEDIERGK 369

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
            IH  A+K G  +  +VG SL+ MY+KCG + +A  +FK  +  +V+SWNS+I G A +G
Sbjct: 370 VIHAAAVKMGLESGGYVGGSLVVMYSKCGYVSDAVYVFKGINEKNVVSWNSVIVGCAQHG 429

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHY 595
               A+ LF +M+ EGV PD +T  G+LSACSH G++      F    +  ++   +EHY
Sbjct: 430 CGMWALALFNQMLREGVDPDGITVTGLLSACSHSGMLQKARCFFRYFGQKRSVTLTIEHY 489

Query: 596 ACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEP 655
             M+D+L R G L+EA  +V  M +K N+ +W  LL ACR H N+ L + A  ++ E+EP
Sbjct: 490 TSMVDVLGRCGELEEAEAVVMSMPMKANSMVWLALLSACRKHSNLDLAKRAANQIFEIEP 549

Query: 656 QKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQC 715
             ++ Y LLSN++A + RW EV  +R  M+ +G  K+PG SW+ +K Q H FLS D    
Sbjct: 550 DCSAAYVLLSNLYASSSRWAEVALIRRKMKHNGVVKKPGSSWLTLKGQKHKFLSADRSHP 609

Query: 716 RTAEICNTLKTLAAQIR 732
              +I   L+ L  +++
Sbjct: 610 LAEKIYQKLEWLGVKLK 626



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 131/491 (26%), Positives = 231/491 (47%), Gaps = 66/491 (13%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHN 90
           ++EA  IF Q+   +   Y  M+ AYA+N R+ +A  LF ++P +++VSWNS+I G LH 
Sbjct: 71  LDEARAIFDQIPTPHVSLYTIMLHAYAQNHRLREAIDLFRRIPFKDVVSWNSIIKGCLHC 130

Query: 91  DKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF-DLLPNKEDTACWNAMVAG 149
             +  AR+LFD+M R  + SW  ++    R G +++A  LF  + P   D A WNAM+ G
Sbjct: 131 GDIVTARKLFDEMPRRTVVSWTTLVDGLLRLGIVQEAETLFWAMEPMDRDVAAWNAMIHG 190

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML 209
           Y   G  ++A +L   MPS++++SW+SM++G   NG+   A   F     RD+V+  + L
Sbjct: 191 YCSNGRVDDALQLFCQMPSRDVISWSSMIAGLDHNGKSEQALVLF-----RDMVASGVCL 245

Query: 210 DGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNA 269
              V +  L +A     KIP     +W   +  +    ++ +    FD+    ++V +  
Sbjct: 246 SSGVLVCGLSAA----AKIP-----AWRVGIQIHCSVFKLGDWH--FDEFVSASLVTF-- 292

Query: 270 MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
               Y    Q+E A R+F E+  ++ V WT ++ GY    K  EA  +  +M   ++   
Sbjct: 293 ----YAGCKQMEAACRVFGEVVYKSVVIWTALLTGYGLNDKHREALEVFGEMMRIDVVPN 348

Query: 330 TAMISGY---------VQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF 380
            +  +           ++  ++  A  +   + +   V  ++++  Y++CG + +A+ +F
Sbjct: 349 ESSFTSALNSCCGLEDIERGKVIHAAAVKMGLESGGYVGGSLVVM-YSKCGYVSDAVYVF 407

Query: 381 RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
           + +  K++V+WN++I G AQ                      W               AL
Sbjct: 408 KGINEKNVVSWNSVIVGCAQ-----------------HGCGMW---------------AL 435

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ-IHHLAIKSGYVNDLFVGNSLITM 499
            +F  M +EG   D  T+   LSAC+H   LQ  R    +   K      +    S++ +
Sbjct: 436 ALFNQMLREGVDPDGITVTGLLSACSHSGMLQKARCFFRYFGQKRSVTLTIEHYTSMVDV 495

Query: 500 YAKCGRIQNAE 510
             +CG ++ AE
Sbjct: 496 LGRCGELEEAE 506



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 104/406 (25%), Positives = 188/406 (46%), Gaps = 39/406 (9%)

Query: 30  RVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLH 89
           R+ EAI +F ++  K+ V++NS+I      G +  ARKLF++MP+R +VSW +++ G L 
Sbjct: 101 RLREAIDLFRRIPFKDVVSWNSIIKGCLHCGDIVTARKLFDEMPRRTVVSWTTLVDGLLR 160

Query: 90  NDKVKEARELFDKM--FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMV 147
              V+EA  LF  M     D+ +W  MI  Y   G ++ A +LF  +P++ D   W++M+
Sbjct: 161 LGIVQEAETLFWAMEPMDRDVAAWNAMIHGYCSNGRVDDALQLFCQMPSR-DVISWSSMI 219

Query: 148 AGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL 207
           AG    G   +A  L   M +  +     + SG    G +  A+K         + +W +
Sbjct: 220 AGLDHNGKSEQALVLFRDMVASGVC----LSSGVLVCG-LSAAAK---------IPAWRV 265

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
            +  +  +  L   W F + +         ++++ YA   +M  A R+F ++  ++VV W
Sbjct: 266 GIQIHCSVFKLGD-WHFDEFVS-------ASLVTFYAGCKQMEAACRVFGEVVYKSVVIW 317

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPE----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
            A++  Y    +  EA  +F EM       N  S+T+ ++    +  ++   +++     
Sbjct: 318 TALLTGYGLNDKHREALEVFGEMMRIDVVPNESSFTSALNSCCGLEDIERG-KVIHAAAV 376

Query: 324 KNIAAQTAMISG-----YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
           K        + G     Y +   + +A  +F  I   +VV WN +I G AQ G    A+ 
Sbjct: 377 KMGLESGGYVGGSLVVMYSKCGYVSDAVYVFKGINEKNVVSWNSVIVGCAQHGCGMWALA 436

Query: 379 LFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
           LF QM    V+ D +T   +++  +    +  A   F   G++R+ 
Sbjct: 437 LFNQMLREGVDPDGITVTGLLSACSHSGMLQKARCFFRYFGQKRSV 482



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 186/403 (46%), Gaps = 35/403 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  I     +GRV++A+++F QM  ++ ++++SMI+    NG+   A  LF  M    + 
Sbjct: 185 NAMIHGYCSNGRVDDALQLFCQMPSRDVISWSSMIAGLDHNGKSEQALVLFRDMVASGVC 244

Query: 78  VSWNSMIAGYLHNDKVKEAR---ELFDKMFRP-----DLFSWALMITCYTRKGELEKARE 129
           +S   ++ G     K+   R   ++   +F+      D F  A ++T Y    ++E A  
Sbjct: 245 LSSGVLVCGLSAAAKIPAWRVGIQIHCSVFKLGDWHFDEFVSASLVTFYAGCKQMEAACR 304

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV----SWNSMLSGYT--- 182
           +F  +  K     W A++ GY     + EA ++   M   ++V    S+ S L+      
Sbjct: 305 VFGEVVYKS-VVIWTALLTGYGLNDKHREALEVFGEMMRIDVVPNESSFTSALNSCCGLE 363

Query: 183 --KNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
             + G++  A+     +E    V  +L++  Y +   +  A   F+ I E+NVVSW +++
Sbjct: 364 DIERGKVIHAAAVKMGLESGGYVGGSLVV-MYSKCGYVSDAVYVFKGINEKNVVSWNSVI 422

Query: 241 SGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
            G A++G  + A  LF+QM    V    +    +++A    G +++A   F    ++  V
Sbjct: 423 VGCAQHGCGMWALALFNQMLREGVDPDGITVTGLLSACSHSGMLQKARCFFRYFGQKRSV 482

Query: 297 S-----WTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMD----EAN 346
           +     +T+M+D   R  +L+EA  ++  MP K N     A++S   ++  +D     AN
Sbjct: 483 TLTIEHYTSMVDVLGRCGELEEAEAVVMSMPMKANSMVWLALLSACRKHSNLDLAKRAAN 542

Query: 347 QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIV 389
           QIF+ I       + ++   YA   R  E   + R+M +  +V
Sbjct: 543 QIFE-IEPDCSAAYVLLSNLYASSSRWAEVALIRRKMKHNGVV 584



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 11/168 (6%)

Query: 3   ASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRV 62
           A++K     G YV      +    K G V +A+ +F  +++KN V++NS+I   A++G  
Sbjct: 374 AAVKMGLESGGYV--GGSLVVMYSKCGYVSDAVYVFKGINEKNVVSWNSVIVGCAQHGCG 431

Query: 63  NDARKLFEQMPQRNL----VSWNSMIAGYLHNDKVKEARELF-----DKMFRPDLFSWAL 113
             A  LF QM +  +    ++   +++   H+  +++AR  F      +     +  +  
Sbjct: 432 MWALALFNQMLREGVDPDGITVTGLLSACSHSGMLQKARCFFRYFGQKRSVTLTIEHYTS 491

Query: 114 MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKK 161
           M+    R GELE+A  +   +P K ++  W A+++   K  N + AK+
Sbjct: 492 MVDVLGRCGELEEAEAVVMSMPMKANSMVWLALLSACRKHSNLDLAKR 539


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  361 bits (926), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 226/704 (32%), Positives = 365/704 (51%), Gaps = 68/704 (9%)

Query: 32  EEAIKIFS----QMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGY 87
           +E  +++S     MS  +    N+++S + + G + DA  +F +M +RNL SWN ++ GY
Sbjct: 123 KEGSRVYSYVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGY 182

Query: 88  LHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDT 140
                  EA +L+ +M     +PD++++  ++        L + RE+   +     + D 
Sbjct: 183 AKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDV 242

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER 200
              NA++  Y K G+ N A+ + D MP+++ +SWN+M+SGY +NG      + F      
Sbjct: 243 DVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLF------ 296

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
                 +M+   V+ D +             +V++   +L G  R GR +    L  +  
Sbjct: 297 -----GMMIKYPVDPDLMTMT----------SVITACELL-GDDRLGRQIHGYVLRTEFG 340

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
            R+    N++I  Y   G IEEA  +F     R+ VSWT MI GY               
Sbjct: 341 -RDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCL----------- 388

Query: 321 MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF 380
           MP K +           +  +M EA  I       D +   +++   +    +D  +NL 
Sbjct: 389 MPQKAL-----------ETYKMMEAEGIMP-----DEITIAIVLSACSCLCNLDMGMNLH 432

Query: 381 RQMVNKDIVTW----NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
                K +V++    N++I  YA+ + +D A++IF      +N VSW ++I G   N   
Sbjct: 433 EVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHST-LEKNIVSWTSIILGLRINNRC 491

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSL 496
            +AL  F  M +   K +  TL C LSACA + AL  G++IH  A+++G   D F+ N++
Sbjct: 492 FEALFFFREMIRR-LKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAI 550

Query: 497 ITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
           + MY +CGR++ A   F   D  +V SWN L+ GYA  G    A +LF+ MV   V+P+ 
Sbjct: 551 LDMYVRCGRMEYAWKQFFSVDH-EVTSWNILLTGYAERGKGAHATELFQRMVESNVSPNE 609

Query: 557 VTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVK 616
           VTFI +L ACS  G+V  GL+ F  M   Y+I P ++HYAC++DLL R+G+L+EA+E ++
Sbjct: 610 VTFISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQ 669

Query: 617 GMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDE 676
            M +KP+  +WG LL +CR+H +++LG +A E + + +      Y LLSN++A+ G+WD+
Sbjct: 670 KMPMKPDPAVWGALLNSCRIHHHVELGELAAENIFQDDTTSVGYYILLSNLYADNGKWDK 729

Query: 677 VEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           V +VR  M  +G    PGCSW+EVK  +H FLS D    +  EI
Sbjct: 730 VAEVRKMMRQNGLIVDPGCSWVEVKGTVHAFLSSDNFHPQIKEI 773



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/453 (25%), Positives = 212/453 (46%), Gaps = 65/453 (14%)

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPE-RNPVSWTTMIDGYVRIAKLDEARRLLDQ------ 320
           N+ I      G ++ A      M E R PV      D YV + +L E +R   +      
Sbjct: 75  NSHIYQLCLLGNLDRAMSYLDSMHELRIPVE----DDAYVALIRLCEWKRARKEGSRVYS 130

Query: 321 -----MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
                M + ++    A++S +V+   + +A  +F ++   ++  WNV++ GYA+ G  DE
Sbjct: 131 YVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDE 190

Query: 376 AINLFRQM----VNKDIVTW-----------------------------------NTMIA 396
           A++L+ +M    V  D+ T+                                   N +I 
Sbjct: 191 ALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALIT 250

Query: 397 GYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHS 456
            Y +   ++ A  +F++M   R+ +SWNA+ISG+ +N   L+ L++F +M +     D  
Sbjct: 251 MYVKCGDVNTARLVFDKM-PNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLM 309

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
           T+   ++AC  L   +LGRQIH   +++ +  D  + NSLI MY+  G I+ AE +F   
Sbjct: 310 TMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRT 369

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGL 576
           +  D++SW ++I+GY       +A++ ++ M  EG+ PD +T   VLSACS +  +D G+
Sbjct: 370 ECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGM 429

Query: 577 KLFECMTEVYAIEPLVEHYAC---MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
            L E   +    + LV +      +ID+ ++   +D+A E+     ++ N   W +++  
Sbjct: 430 NLHEVAKQ----KGLVSYSIVANSLIDMYAKCKCIDKALEIFHS-TLEKNIVSWTSIILG 484

Query: 634 CRMHQNIKLGRIAV-EKLSELEPQKTSCYALLS 665
            R++           E +  L+P   +   +LS
Sbjct: 485 LRINNRCFEALFFFREMIRRLKPNSVTLVCVLS 517



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 106/234 (45%), Gaps = 20/234 (8%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           SY    N  I    K   +++A++IF    +KN V++ S+I     N R  +A   F +M
Sbjct: 442 SYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREM 501

Query: 73  PQR---NLVSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELE 125
            +R   N V+   +++       +   +E+     R     D F    ++  Y R G +E
Sbjct: 502 IRRLKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRME 561

Query: 126 KA-RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSG 180
            A ++ F +     +   WN ++ GYA+ G    A +L   M   N+    V++ S+L  
Sbjct: 562 YAWKQFFSV---DHEVTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCA 618

Query: 181 YTKNGEMHLASKFFEAMEERDVVSWNL-----MLDGYVELDDLDSAWKFFQKIP 229
            +++G +    ++F +M+ +  +  NL     ++D       L+ A++F QK+P
Sbjct: 619 CSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMP 672


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  361 bits (926), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 213/688 (30%), Positives = 344/688 (50%), Gaps = 100/688 (14%)

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           DT   N +V    + G  + A+K+ D MP KN VS N+M+SG+ K G++  A   F+AM 
Sbjct: 47  DTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMP 106

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQK--------IPEQNVVSWVTMLSG----YARN 246
           +R VV+W +++  Y      D A+K F++        +P+   V++ T+L G      +N
Sbjct: 107 DRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDH--VTFTTLLPGCNDAVPQN 164

Query: 247 G----RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMI 302
                     +  FD  P   V   N ++ +Y +  +++ A  LF E+PE++ V++ T+I
Sbjct: 165 AVGQVHAFAVKLGFDTNPFLTVS--NVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLI 222

Query: 303 DGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG--------------------------- 335
            GY +     E+  L  +M            SG                           
Sbjct: 223 TGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFS 282

Query: 336 ------------YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
                       Y ++ R+ E   +FD++   D V +NV+I  Y+Q  + + +++ FR+M
Sbjct: 283 RDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREM 342

Query: 384 ---------------------------------------VNKDIVTWNTMIAGYAQIRQM 404
                                                   +  +   N+++  YA+    
Sbjct: 343 QCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMF 402

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSA 464
           ++A  IF+ +  +R TVSW ALISG++Q   H   LK+F  M     +AD ST A  L A
Sbjct: 403 EEAELIFKSL-PQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKA 461

Query: 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
            A  A+L LG+Q+H   I+SG + ++F G+ L+ MYAKCG I++A  +F++    + +SW
Sbjct: 462 SASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSW 521

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           N+LI+ +A NG+   AI  F +M+  G+ PD V+ +GVL+ACSH G V+ G + F+ M+ 
Sbjct: 522 NALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSP 581

Query: 585 VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
           +Y I P  +HYACM+DLL R GR  EA +++  M  +P+  +W ++L ACR+H+N  L  
Sbjct: 582 IYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAE 641

Query: 645 IAVEKLSELEP-QKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQ 703
            A EKL  +E  +  + Y  +SN++A AG W++V  V+ +M   G +K P  SW+EV ++
Sbjct: 642 RAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHK 701

Query: 704 IHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           IH F S D       EI   +  L A+I
Sbjct: 702 IHVFSSNDQTHPNGDEIVRKINELTAEI 729



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 172/682 (25%), Positives = 295/682 (43%), Gaps = 131/682 (19%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +  L + G+V  A K++ +M  KNTV+ N+MIS + K G V+ AR LF+ MP R +V
Sbjct: 52  NFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVV 111

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFR------PDLFSW-ALMITC-----YTRKGELEK 126
           +W  ++  Y  N    EA +LF +M R      PD  ++  L+  C         G++  
Sbjct: 112 TWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHA 171

Query: 127 -AREL-FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
            A +L FD  P        N ++  Y ++   + A  L + +P K+ V++N++++GY K+
Sbjct: 172 FAVKLGFDTNPF---LTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKD 228

Query: 185 G----EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT-- 238
           G     +HL  K  ++  +    +++ +L   V L D    +   Q++   +V +  +  
Sbjct: 229 GLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHD----FALGQQLHALSVTTGFSRD 284

Query: 239 ------MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP- 291
                 +L  Y+++ R+LE R LFD+MP  + V++N +I++Y Q  Q E +   F EM  
Sbjct: 285 ASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQC 344

Query: 292 ---ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN----IAAQTAMISGYVQNKRMDE 344
              +R    + TM+     ++ L   R+L  Q         +    +++  Y + +  +E
Sbjct: 345 MGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEE 404

Query: 345 ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAG--- 397
           A  IF  +     V W  +I GY Q G     + LF +M    +  D  T+ T++     
Sbjct: 405 AELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASAS 464

Query: 398 --------------------------------YAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
                                           YA+   + DAV++FEEM   RN VSWNA
Sbjct: 465 FASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPD-RNAVSWNA 523

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485
           LIS    N     A+  F  M + G + D  ++   L+AC+H                  
Sbjct: 524 LISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSH------------------ 565

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS-----WNSLIAGYAINGNATEA 540
                            CG ++     F+   P+  I+     +  ++     NG   EA
Sbjct: 566 -----------------CGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEA 608

Query: 541 IKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE-VYAIEPLVE--HYAC 597
            KL +EM  E   PD + +  VL+AC     +     L E   E ++++E L +   Y  
Sbjct: 609 EKLMDEMPFE---PDEIMWSSVLNACR----IHKNQSLAERAAEKLFSMEKLRDAAAYVS 661

Query: 598 MIDLLSRAGRLDEAFEMVKGMK 619
           M ++ + AG  ++  ++ K M+
Sbjct: 662 MSNIYAAAGEWEKVRDVKKAMR 683



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 135/525 (25%), Positives = 241/525 (45%), Gaps = 66/525 (12%)

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
           + D    N +++  +    + +A K + ++P +N VS  TM+SG+ + G +  AR LFD 
Sbjct: 45  DTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDA 104

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP------VSWTTMIDGYVRIAKLD 312
           MP R VV W  ++  Y +    +EA +LF +M   +       V++TT++ G       +
Sbjct: 105 MPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQN 164

Query: 313 EARRL--------LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMI 364
              ++         D  P+  ++    ++  Y + +R+D A  +F++I   D V +N +I
Sbjct: 165 AVGQVHAFAVKLGFDTNPFLTVS--NVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLI 222

Query: 365 KGYAQCGRMDEAINLFRQM---------------------------------------VN 385
            GY + G   E+I+LF +M                                        +
Sbjct: 223 TGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFS 282

Query: 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVL 445
           +D    N ++  Y++  ++ +   +F+EM +  + VS+N +IS + Q + +  +L  F  
Sbjct: 283 RDASVGNQILDFYSKHDRVLETRMLFDEMPE-LDFVSYNVVISSYSQADQYEASLHFFRE 341

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
           M   G    +   A  LS  A+L++LQ+GRQ+H  A+ +   + L VGNSL+ MYAKC  
Sbjct: 342 MQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEM 401

Query: 506 IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565
            + AEL+FK       +SW +LI+GY   G     +KLF +M    +  D  TF  VL A
Sbjct: 402 FEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKA 461

Query: 566 CSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAG 625
            +    +  G +L   +     +E +      ++D+ ++ G + +A ++ + M  + NA 
Sbjct: 462 SASFASLLLGKQLHAFIIRSGNLENVFSGSG-LVDMYAKCGSIKDAVQVFEEMPDR-NAV 519

Query: 626 IWGTLLGACRMHQNIKLGRIAVEKL-----SELEPQKTSCYALLS 665
            W  L+ A   H +   G  A+        S L+P   S   +L+
Sbjct: 520 SWNALISA---HADNGDGEAAIGAFAKMIESGLQPDSVSILGVLT 561



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 144/325 (44%), Gaps = 44/325 (13%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +    K    EEA  IF  + Q+ TV++ ++IS Y + G      KLF +M   NL 
Sbjct: 390 NSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLR 449

Query: 79  SWNSMIAGYLHND----KVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKAREL 130
           +  S  A  L        +   ++L   + R     ++FS + ++  Y + G ++ A ++
Sbjct: 450 ADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQV 509

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEA----KKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           F+ +P++ +   WNA+++ +A  G+   A     K++++    + VS   +L+  +  G 
Sbjct: 510 FEEMPDR-NAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGF 568

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARN 246
           +   +++F+AM                           +   P++    +  ML    RN
Sbjct: 569 VEQGTEYFQAMS------------------------PIYGITPKKK--HYACMLDLLGRN 602

Query: 247 GRMLEARRLFDQMPIR-NVVAWNAMI-AAYVQRGQ--IEEAARLFIEMPE-RNPVSWTTM 301
           GR  EA +L D+MP   + + W++++ A  + + Q   E AA     M + R+  ++ +M
Sbjct: 603 GRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSM 662

Query: 302 IDGYVRIAKLDEARRLLDQMPYKNI 326
            + Y    + ++ R +   M  + I
Sbjct: 663 SNIYAAAGEWEKVRDVKKAMRERGI 687



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 13/201 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF+ +  +    K G +++A+++F +M  +N V++N++ISA+A NG    A   F +M +
Sbjct: 487 VFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIE 546

Query: 75  RNLVSWNSMIAGYL----HNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELE 125
             L   +  I G L    H   V++  E F  M       P    +A M+    R G   
Sbjct: 547 SGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFA 606

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYN----EAKKLLDAMPSKNIVSWNSMLSGY 181
           +A +L D +P + D   W++++       N +     A+KL      ++  ++ SM + Y
Sbjct: 607 EAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIY 666

Query: 182 TKNGEMHLASKFFEAMEERDV 202
              GE        +AM ER +
Sbjct: 667 AAAGEWEKVRDVKKAMRERGI 687


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  361 bits (926), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 224/692 (32%), Positives = 362/692 (52%), Gaps = 29/692 (4%)

Query: 66  RKLFEQMPQRNLVSWNSMIAGYLHN-DKVKEARELFDKM----FRPDLFSWALMITCYTR 120
           +  F   P        S++  +LHN   +K+   +  +M    F  D F+ + ++   T 
Sbjct: 26  KSTFNHKPTFKPTITLSILETHLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTD 85

Query: 121 KG--ELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSML 178
                L+ + ++FD + N  +   WN M+  Y +  +  +A  L   M   N+   N   
Sbjct: 86  SPFIGLDYSLQIFDRIENS-NGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTY 144

Query: 179 SGYTKN--------GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPE 230
               +         G   +     +   + DV   N +++ Y    ++  A K F + P 
Sbjct: 145 PLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPV 204

Query: 231 QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
            + VSW ++L+GY + G + EA+ +FDQMP RN+VA N+MI    + GQ+ EA +LF EM
Sbjct: 205 LDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEM 264

Query: 291 PERNPVSWTTMIDGYVRIAKLDEARRL----------LDQMPYKNIAAQTAMISGYVQNK 340
            E++ VSW+ +I GY +    +EA  +          LD++   ++ +  A +S  V+  
Sbjct: 265 DEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLS-IVKTG 323

Query: 341 RMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQ 400
           +M     I   I ++ V   N +I  Y+  G + +A  LF    N D ++WN+MI+G  +
Sbjct: 324 KMIHGLVIRMGIESY-VNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMK 382

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
              ++ A  +F+ M   ++ VSW+A+ISG+ Q++   + L +F  M     + D + L  
Sbjct: 383 CGSVEKARALFDVM-PEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVS 441

Query: 461 ALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVD 520
            +SAC HLAAL  G+ +H    K+G   ++ +G +L+ MY KCG ++NA  +F   +   
Sbjct: 442 VISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKG 501

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE 580
           V SWN+LI G A+NG    ++ +F EM   GV P+ +TF+GVL AC H+GLVD G   F 
Sbjct: 502 VSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFA 561

Query: 581 CMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNI 640
            M E + IEP V+HY CM+DLL RAG L+EA ++++ M + P+   WG LLGAC+ H + 
Sbjct: 562 SMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDT 621

Query: 641 KLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEV 700
           ++G     KL EL+P     + LLSN+ A  G W++V +VR  M+  G  K PGCS IE 
Sbjct: 622 EMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEA 681

Query: 701 KNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
              +H FL+GD       ++   L  +A +++
Sbjct: 682 NGVVHEFLAGDKTHPWINKVEGMLNEMAKRLK 713



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 147/564 (26%), Positives = 270/564 (47%), Gaps = 38/564 (6%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHN 90
           ++ +++IF ++   N   +N+M+ AY ++     A  L++ M + N+   N      +  
Sbjct: 91  LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA 150

Query: 91  DKVK----EARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTAC 142
             V+      +E+ D +    F  D++    +I  Y   G +  AR+LFD  P   D+  
Sbjct: 151 CAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESP-VLDSVS 209

Query: 143 WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV 202
           WN+++AGY K G+  EAK + D MP +NIV+ NSM+    K G++  A K F  M+E+D+
Sbjct: 210 WNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDM 269

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYA-----RNGRMLEAR 253
           VSW+ ++ GY +    + A   F ++    +    V  V++LS  A     + G+M+   
Sbjct: 270 VSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHG- 328

Query: 254 RLFDQMPIRNVVAW-NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLD 312
            L  +M I + V   NA+I  Y   G+I +A +LF      + +SW +MI G ++   ++
Sbjct: 329 -LVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVE 387

Query: 313 EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD-----KIGTHDVVCWNVMIKGY 367
           +AR L D MP K+I + +A+ISGY Q+    E   +F      +I   + +  +V I   
Sbjct: 388 KARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSV-ISAC 446

Query: 368 AQCGRMDEA----INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
                +D+       + +  +  +++   T++  Y +   +++A+++F  M + +   SW
Sbjct: 447 THLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGM-EEKGVSSW 505

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR-QIHHLAI 482
           NALI G   N     +L +F  M   G   +  T    L AC H+  +  GR     +  
Sbjct: 506 NALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIE 565

Query: 483 KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGNATEA 540
           K G   ++     ++ +  + G +  AE L +   P+  DV +W +L+     +G+    
Sbjct: 566 KHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESM-PMAPDVATWGALLGACKKHGDTEMG 624

Query: 541 IKLFEEMVMEGVAPDPVTFIGVLS 564
            ++  +++   + PD   F  +LS
Sbjct: 625 ERVGRKLI--ELQPDHDGFHVLLS 646



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 110/439 (25%), Positives = 218/439 (49%), Gaps = 24/439 (5%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V+ QN  I      G + +A K+F +    ++V++NS+++ Y K G V +A+ +F+QM
Sbjct: 174 SDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQM 233

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF- 131
           PQRN+V+ NSMI       +V EA +LF++M   D+ SW+ +I+ Y + G  E+A  +F 
Sbjct: 234 PQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFI 293

Query: 132 DLLPN--KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSW----NSMLSGYTKNG 185
           ++  N  + D     ++++  A +      K +   +    I S+    N+++  Y+ +G
Sbjct: 294 EMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSG 353

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR 245
           E+  A K F      D +SWN M+ G ++   ++ A   F  +PE+++VSW  ++SGYA+
Sbjct: 354 EIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQ 413

Query: 246 NGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVS 297
           +    E   LF +M +  +        ++I+A      +++   +   + +     N + 
Sbjct: 414 HDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVIL 473

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV 357
            TT++D Y++   ++ A  + + M  K +++  A+I G   N  ++ +  +F ++  + V
Sbjct: 474 GTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGV 533

Query: 358 VCWNVMIKG-YAQC---GRMDEAINLFRQMVNK-----DIVTWNTMIAGYAQIRQMDDAV 408
           +   +   G    C   G +DE    F  M+ K     ++  +  M+    +   +++A 
Sbjct: 534 IPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAE 593

Query: 409 KIFEEMGKRRNTVSWNALI 427
           K+ E M    +  +W AL+
Sbjct: 594 KLIESMPMAPDVATWGALL 612


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 226/782 (28%), Positives = 372/782 (47%), Gaps = 128/782 (16%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR---- 105
           N++I+ Y++ G + DA ++F+ M  R+ +SWNS I+GY  N     A +LF KM+     
Sbjct: 237 NALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTE 296

Query: 106 ----------PDLFSWALMITCYTRKGELEKARELFDL--LPNKEDTACWNAMVAGYAKI 153
                     P        +      G   K+  L+DL  + +  D A  + +V  Y K 
Sbjct: 297 ISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKC 356

Query: 154 GNYNEAKKLLDAMPSK-NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS-------- 204
           G+   A+++ DAMPSK N+  WN ++ GY K  E   +   FE M E  +          
Sbjct: 357 GDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCL 416

Query: 205 -------------------------------WNLMLDGYVELDDLDSAWKFFQKIPEQNV 233
                                           N ++  Y + + +D+A   F ++P Q+ 
Sbjct: 417 LKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDT 476

Query: 234 VSWVTMLSGYARNGRMLEARRLF----------DQMPIRNVVA-------W--------- 267
           +SW +++SG   NG   EA  LF          D   + +V+        W         
Sbjct: 477 ISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGY 536

Query: 268 -------------NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
                        NA++  Y          ++F  M ++N VSWT MI  Y R    D+ 
Sbjct: 537 SVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKV 596

Query: 315 RRLLDQMPYKNIA----AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC 370
             LL +M    I     A T+++ G+  ++ + +   +                 GYA  
Sbjct: 597 AGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSV----------------HGYA-- 638

Query: 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
                     R  + K +   N ++  Y   R M++A  +F+ +   ++ +SWN LI G+
Sbjct: 639 ---------IRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHV-TNKDIISWNTLIGGY 688

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
            +N F  ++  +F  M  +  K +  T+ C L A A +++L+ GR+IH  A++ G++ D 
Sbjct: 689 SRNNFANESFSLFSDMLLQ-FKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDS 747

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME 550
           +  N+L+ MY KCG +  A +LF      ++ISW  +IAGY ++G   +A+ LFE+M   
Sbjct: 748 YTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGS 807

Query: 551 GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDE 610
           GV PD  +F  +L AC H GL   G K F  M + Y IEP ++HY C++DLLS  G L E
Sbjct: 808 GVEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKE 867

Query: 611 AFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAE 670
           AFE ++ M I+P++ IW +LL  CR+H+++KL     +++ +LEP+ T  Y LL+N++AE
Sbjct: 868 AFEFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLLANIYAE 927

Query: 671 AGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQ 730
           A RW+ V+K++  + G G ++  GCSWIEV+ ++H F++ +        I   L  +A +
Sbjct: 928 AERWEAVKKLKNKIGGRGLRENTGCSWIEVRGKVHVFIADNRNHPEWNRIAEFLDHVARR 987

Query: 731 IR 732
           +R
Sbjct: 988 MR 989



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 181/779 (23%), Positives = 304/779 (39%), Gaps = 152/779 (19%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNT------VTYNSMIS 54
           + A+L+ +G+ G         + QL    R  EA +    + +  T      V    ++ 
Sbjct: 79  LAAALRLLGSDGGVGVRSYCAVVQLCGEERSLEAARRAHALVRAGTGGIIGSVLGKRLVL 138

Query: 55  AYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALM 114
           AY K G +  AR +F++MP R                               D+  W  +
Sbjct: 139 AYLKCGDLGGARMVFDEMPPR-----------------------------VADVRVWTSL 169

Query: 115 ITCYTRKGELEKARELFDLL------PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP- 167
           ++ Y + G+ ++   LF  +      P+    +C    +A    I        LL+ +  
Sbjct: 170 MSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGL 229

Query: 168 SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK 227
            +     N++++ Y++ G M  A + F++M  RD +SWN  + GY      D A   F K
Sbjct: 230 GEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSK 289

Query: 228 I-PEQNVVSWVTMLS--------------------------------------------- 241
           +  E   +S VT+LS                                             
Sbjct: 290 MWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKL 349

Query: 242 --GYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW 298
              Y + G M  ARR+FD MP + NV  WN ++  Y +  + EE+  LF +M E      
Sbjct: 350 VFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPD 409

Query: 299 TTMIDGYVR-IAKLDEARRLLDQMPY-------KNIAAQTAMISGYVQNKRMDEANQIFD 350
              +   ++ I  L  AR  L    Y          A   A+IS Y ++  +D A  +FD
Sbjct: 410 EHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFD 469

Query: 351 KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM--------------------------V 384
           ++   D + WN +I G    G   EAI LF +M                          V
Sbjct: 470 RMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFV 529

Query: 385 NKDIVTW-------------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFL 431
            + +  +             N ++  Y+         +IF  M + +N VSW A+I+ + 
Sbjct: 530 GRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQ-KNVVSWTAMITSYT 588

Query: 432 QNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLF 491
           +         +   M  +G K D   +   L   A   +L+ G+ +H  AI++G    L 
Sbjct: 589 RAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLP 648

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
           V N+L+ MY  C  ++ A L+F      D+ISWN+LI GY+ N  A E+  LF +M+++ 
Sbjct: 649 VANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDMLLQ- 707

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP--LVEHYA--CMIDLLSRAGR 607
             P+ VT   +L A + +  ++ G ++       YA+    L + Y    ++D+  + G 
Sbjct: 708 FKPNTVTMTCILPAVASISSLERGREI-----HAYALRRGFLEDSYTSNALVDMYVKCGA 762

Query: 608 LDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL--SELEPQKTSCYALL 664
           L  A  +   +  K N   W  ++    MH   K      E++  S +EP   S  A+L
Sbjct: 763 LLVARVLFDRLT-KKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAIL 820



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 163/348 (46%), Gaps = 38/348 (10%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP----QRNLVSWNSMIAGYLHND 91
           +IF  M+QKN V++ +MI++Y + G  +    L ++M     + ++ +  S++ G+  ++
Sbjct: 567 QIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDE 626

Query: 92  KVKEARELFDKMFRPDL-----FSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
            +K+ + +     R  +      + ALM   Y     +E+AR +FD + NK D   WN +
Sbjct: 627 SLKQGKSVHGYAIRNGMEKLLPVANALM-EMYVNCRNMEEARLVFDHVTNK-DIISWNTL 684

Query: 147 VAGYAKIGNYNEAKKLLDAMP---SKNIVSWNSML------SGYTKNGEMH---LASKFF 194
           + GY++    NE+  L   M      N V+   +L      S   +  E+H   L   F 
Sbjct: 685 IGGYSRNNFANESFSLFSDMLLQFKPNTVTMTCILPAVASISSLERGREIHAYALRRGFL 744

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
           E     D  + N ++D YV+   L  A   F ++ ++N++SW  M++GY  +G   +A  
Sbjct: 745 E-----DSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVA 799

Query: 255 LFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGY 305
           LF+QM    V     +++A++ A    G   E  + F  M +   +      +T ++D  
Sbjct: 800 LFEQMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLL 859

Query: 306 VRIAKLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKI 352
                L EA   ++ MP + + +   +++ G   ++ +  A ++ D++
Sbjct: 860 SHTGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRV 907



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 102/214 (47%), Gaps = 23/214 (10%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
           +++ T N+++  Y K G +  AR LF+++ ++NL+SW  MIAGY  +   K+A  LF++M
Sbjct: 745 EDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQM 804

Query: 104 ----FRPDLFSWALMITCYTRKGELEKARELFDLL-------PNKEDTACWNAMVAGYAK 152
                 PD  S++ ++      G   +  + F+ +       P  +   C   +V   + 
Sbjct: 805 RGSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTC---IVDLLSH 861

Query: 153 IGNYNEAKKLLDAMPSKNIVS-WNSMLSGYTKNGEMHLASKFFE---AMEERDVVSWNLM 208
            GN  EA + +++MP +   S W S+L G   + ++ LA K  +    +E  +   + L+
Sbjct: 862 TGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLL 921

Query: 209 LDGYVELDDLDSAWKFFQKIP-----EQNVVSWV 237
            + Y E +  ++  K   KI      E    SW+
Sbjct: 922 ANIYAEAERWEAVKKLKNKIGGRGLRENTGCSWI 955



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 76/158 (48%), Gaps = 9/158 (5%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP-- 73
           +  N  +    K G +  A  +F ++++KN +++  MI+ Y  +G   DA  LFEQM   
Sbjct: 748 YTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGS 807

Query: 74  --QRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEK 126
             + +  S+++++    H+    E  + F+ M       P L  +  ++   +  G L++
Sbjct: 808 GVEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKE 867

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLD 164
           A E  + +P + D++ W +++ G     +   A+K+ D
Sbjct: 868 AFEFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVAD 905


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 224/686 (32%), Positives = 359/686 (52%), Gaps = 81/686 (11%)

Query: 93  VKEARELFDKMFRPDLFS---WA--LMITCYTRKGELEKARELFDLLPNKEDTACWNAMV 147
           +++ R+    +    L S   W   L+I C            +F   P+  D + ++ M+
Sbjct: 14  IRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSP-DASVYSCML 72

Query: 148 AGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL 207
             Y+++G +N+   L     S N+     +     K     LA K           S N+
Sbjct: 73  KYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIK-----LAGK-----------SGNM 116

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
                ++L  +D    F +            +L  YA+NG++  AR LF+QM  R +  W
Sbjct: 117 FHAYVLKLGHIDD--HFIRN----------AILDMYAKNGQVDLARNLFEQMAERTLADW 164

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
           N+MI+   + G   EA  LF  MP RN ++WT+M+ GY ++  L+ ARR  D+MP +++ 
Sbjct: 165 NSMISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVV 224

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIG----THDVVCWNVMIKG----------------- 366
           +  AM S Y Q +   EA  +F ++     T D   W V I                   
Sbjct: 225 SWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMI 284

Query: 367 ------------------YAQCGRMDEAINLFRQM-VNKDIVTWNTMIAGYAQIRQMDDA 407
                             +A+ G ++ A N+F ++   ++ VTWN MI+ Y ++ ++  A
Sbjct: 285 DQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLA 344

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV-LMTQEGKKADHSTLACALSACA 466
            ++F+ M KR + VSWN++I+G+ QN     ++++F  +++    + D  T+A  LSAC 
Sbjct: 345 RELFDNMPKR-DVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACG 403

Query: 467 HLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNS 526
           H+ AL+L   +  +  +      +   NSLI MY+KCG + +A  +F+     DV+S+N+
Sbjct: 404 HIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNT 463

Query: 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVY 586
           LI+G+A NG+  EAIKL   M  EG+ PD VT+IGVL+ACSH GL++ G  +F+ +    
Sbjct: 464 LISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQA-- 521

Query: 587 AIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIA 646
              P V+HYACM+DLL RAG LDEA  +++ M +KP+AG++G+LL A R+H+ + LG +A
Sbjct: 522 ---PTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELA 578

Query: 647 VEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHT 706
             KL ELEPQ    Y LLSN++A  GRW++V++VR  M+  G +K  G SW+E K Q+H 
Sbjct: 579 ASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHK 638

Query: 707 FLSGDPKQCRTAEICNTLKTLAAQIR 732
           F  GD    ++ +I   L  L  +++
Sbjct: 639 FTVGDRSHEQSKDIYKLLAELERKMK 664



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 144/500 (28%), Positives = 248/500 (49%), Gaps = 29/500 (5%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           IF+     +   Y+ M+  Y++ G  N    LF+     NL      +  YL     K  
Sbjct: 56  IFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRP-QPFVYIYLIKLAGKSG 114

Query: 97  RELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAK 152
                 + +     D F    ++  Y + G+++ AR LF+ +  +   A WN+M++G  K
Sbjct: 115 NMFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERT-LADWNSMISGCWK 173

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY 212
            GN  EA  L + MP++NI++W SM++GY K G++  A ++F+ M ER VVSWN M   Y
Sbjct: 174 SGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAY 233

Query: 213 VELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEAR---RLFDQMPI-RNV 264
            + +    A   F ++ E+ +     +WV  +S  +  G    A    R+ DQ  I  N 
Sbjct: 234 AQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNS 293

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEM-PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
               A++  + + G +E A  +F E+  +RN V+W  MI  Y R+ KL  AR L D MP 
Sbjct: 294 FVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPK 353

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIF-DKIGTHDVVCWNVMIKG-YAQCGRMDE------ 375
           +++ +  +MI+GY QN     + ++F + I   D+    V I    + CG +        
Sbjct: 354 RDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYW 413

Query: 376 AINLFRQM-VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
            +++ R+  +   I  +N++I  Y++   + DA +IF+ MG  R+ VS+N LISGF  N 
Sbjct: 414 VLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGT-RDVVSFNTLISGFAANG 472

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN 494
              +A+K+ + M +EG + DH T    L+AC+H   L  G+ +   +I++  V+      
Sbjct: 473 HGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFK-SIQAPTVDHY---A 528

Query: 495 SLITMYAKCGRIQNAELLFK 514
            ++ +  + G +  A++L +
Sbjct: 529 CMVDLLGRAGELDEAKMLIQ 548



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 196/420 (46%), Gaps = 52/420 (12%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F +N  +    K+G+V+ A  +F QM+++    +NSMIS   K+G   +A  LF  MP R
Sbjct: 131 FIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPAR 190

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           N+++W SM+ GY     ++ AR  FD+M    + SW  M + Y +K   ++A  LF  + 
Sbjct: 191 NIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQML 250

Query: 136 NK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV----SWNSMLSGYTKNGEMH 188
            +    D   W   ++  + IG+   A  +L  +  K+IV       ++L  + K G + 
Sbjct: 251 EEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLE 310

Query: 189 LASKFFEAM-EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
           +A   F+ +  +R+ V+WN+M+  Y  +  L  A + F  +P+++VVSW +M++GYA+NG
Sbjct: 311 IARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNG 370

Query: 248 RMLEARRLF-----------DQMPIRNVVA-----------------------------W 267
               +  LF           D++ I +V++                             +
Sbjct: 371 ESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGF 430

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI- 326
           N++I  Y + G + +A R+F  M  R+ VS+ T+I G+       EA +L+  M  + I 
Sbjct: 431 NSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIE 490

Query: 327 ---AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
                   +++       ++E   +F  I    V  +  M+    + G +DEA  L + M
Sbjct: 491 PDHVTYIGVLTACSHAGLLNEGKNVFKSIQAPTVDHYACMVDLLGRAGELDEAKMLIQSM 550


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 242/776 (31%), Positives = 381/776 (49%), Gaps = 100/776 (12%)

Query: 11  KGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFE 70
           +  YV N  + I      G   ++  +F  M  KN + +N+++S Y +NG   D  K+F 
Sbjct: 76  RNDYVLN-TRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVF- 133

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCY-----TRKGELE 125
                +LVS                     D  F+PD F++  +I         R GE+ 
Sbjct: 134 ----MDLVS---------------------DTDFQPDNFTFPSVIKACGGILDVRLGEV- 167

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
               +   +    D    NA+V  Y K G  +EA K+ D MP  N+VSWNSM+  +++NG
Sbjct: 168 -IHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENG 226

Query: 186 EMHLASKFFEAMEER--------DVVSWNLML-----DGYVELDDLDSAWKFFQKIPEQN 232
               +   F+ + E         DVV+   +L     +G V++            + E+ 
Sbjct: 227 ---FSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEV 283

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP- 291
           +V+   M+  Y++ G + EA+  F +   +NVV+WN MI+A+   G + EA  L  EM  
Sbjct: 284 MVN-NAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQI 342

Query: 292 -----ERNPVSWTTMIDG---YVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMD 343
                + N V+   ++      +++  L E      +  ++++    A I  Y +   ++
Sbjct: 343 QGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQHVELSNAFILAYAKCGALN 402

Query: 344 EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-------------------- 383
            A ++F  IG   V  WN +I G+AQ G   +A++L  QM                    
Sbjct: 403 SAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACA 462

Query: 384 -------------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
                              +  D     ++++ Y    +   A  +F+ M K +N VSWN
Sbjct: 463 HLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRM-KDKNLVSWN 521

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
           A+ISG+ QN    ++L +F     EG ++    +     AC+ L+AL+LG++ H   +K+
Sbjct: 522 AMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKA 581

Query: 485 GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLF 544
               D FVG S+I MYAK G I+ +  +F      +V SWN++I  + I+G+  EAI+L+
Sbjct: 582 LQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELY 641

Query: 545 EEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSR 604
           E M   G  PD  T+IG+L AC H GLV+ GLK F+ M     IEP +EHYAC+ID+L+R
Sbjct: 642 ERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLAR 701

Query: 605 AGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALL 664
           AGRLD+A  +V  M  + +  IW +LL +CR    +++G    +KL ELEP K   Y LL
Sbjct: 702 AGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENYVLL 761

Query: 665 SNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           SN++A  G+WD V +VR  M+  G QK  GCSWIEV  ++++F+ GD  Q ++AEI
Sbjct: 762 SNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVVGDSLQPKSAEI 817



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 91/177 (51%), Gaps = 10/177 (5%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSG-YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVD 520
           L AC +   ++ GR++H     S  Y ND  +   LI MYA CG   ++ L+F + +  +
Sbjct: 50  LQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKN 109

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVME-GVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
           +I WN+L++GY  NG   + +K+F ++V +    PD  TF  V+ AC   G++D  ++L 
Sbjct: 110 LIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACG--GILD--VRLG 165

Query: 580 ECMTEVYAIEPLVEHY---ACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
           E +  +     LV        ++ +  + G +DEA ++   M  + N   W +++ A
Sbjct: 166 EVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMP-ETNLVSWNSMICA 221


>gi|357507465|ref|XP_003624021.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499036|gb|AES80239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 632

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 202/591 (34%), Positives = 338/591 (57%), Gaps = 42/591 (7%)

Query: 139 DTACWNAMVAGYAKIGNYNEA-----KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
           D   +  M+  Y++IG +++      K +L     K   S+ S++     +  M   +  
Sbjct: 51  DVRVFTFMLKYYSQIGVHSQVFVSLFKHMLQHCDIKPNASFYSVMMKSAGSESMLFLAHV 110

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEAR 253
            ++  +RD    N +L  Y +   ++ A K F ++P++ V  W  M+SGY + G   EA 
Sbjct: 111 LKSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEAS 170

Query: 254 RLF----DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIA 309
            LF    DQ   RNV+ W  MI  + ++G ++ A   F +MPER+ VSW  M+ GY +  
Sbjct: 171 TLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGG 230

Query: 310 KLDEARRLLDQM-------PYKNIAAQTAMISGYVQNKRMDEA--NQIFDKIGTH-DVVC 359
             +E  RL + M       P +   A        + +  + E+   ++ DK+G   +   
Sbjct: 231 APEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFV 290

Query: 360 WNVMIKGYAQCGRMDEAINLFRQM---VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
              ++  +A+CG ++ A  +F Q+     +  V WN MI+ YA++  +  A  +F++M  
Sbjct: 291 KTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKM-P 349

Query: 417 RRNTVSWNALISGFLQNEFHLDALKIF--VLMTQEGKKADHSTLACALSACAHLAALQLG 474
           +R+TVSWN++I+G+ QN     A+K+F  ++ +++ +K D  T+    SAC HL  L LG
Sbjct: 350 QRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLG 409

Query: 475 R------QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
                  +++H+ I       + V NSLI MY++CG +Q+A L+F++    D++S+N+LI
Sbjct: 410 NWAVSILKVNHIQIS------ISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLI 463

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI 588
           +G+A +G+  E+I+L  +M  +G+ PD +T+I +L+ACSH GL+D G +LFE +      
Sbjct: 464 SGFAEHGHGMESIELLSKMKEDGIEPDRITYIAILTACSHAGLLDEGQRLFESIKF---- 519

Query: 589 EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVE 648
            P V+HYACMID+L RAGRL+EA ++++ M ++P+AGI+G+LL A  +H+ ++LG +A  
Sbjct: 520 -PDVDHYACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAA 578

Query: 649 KLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
           KL ++EP  +  YALLSN++A AGRW E +KVR +M   G +K  G SW+E
Sbjct: 579 KLFKVEPHNSGNYALLSNIYASAGRWKEGDKVRDTMRKQGVKKTTGLSWLE 629



 Score =  186 bits (471), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 121/397 (30%), Positives = 206/397 (51%), Gaps = 34/397 (8%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF----DKMFR 105
           N ++  YAK G +  ARKLF++MP R +  WN MI+GY      +EA  LF    D+   
Sbjct: 123 NGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEIS 182

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDA 165
            ++ +W  MIT + +KG L+ AR  FD +P +     WNAM++GYA+ G   E  +L + 
Sbjct: 183 RNVITWTTMITGHAKKGNLKTARMYFDKMPER-SVVSWNAMLSGYAQGGAPEETIRLFND 241

Query: 166 MPSKNIV-----SWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL-----MLDGYVEL 215
           M S   V     +W +++S  +  G+  L+      ++++     N      +LD + + 
Sbjct: 242 MLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKC 301

Query: 216 DDLDSAWKFFQKI---PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
            +L++A K F+++     ++ V W  M+S YAR G +  A+ LFD+MP R+ V+WN+MIA
Sbjct: 302 GNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIA 361

Query: 273 AYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDE------ARRLLDQMP 322
            Y Q G+  +A +LF EM      R P    TM+  +     L E      A  +L    
Sbjct: 362 GYTQNGESFKAIKLFEEMISSEDSRKP-DEVTMVSVFSACGHLGELGLGNWAVSILKVNH 420

Query: 323 YK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
            + +I+   ++I+ Y +   M +A  IF ++ T D+V +N +I G+A+ G   E+I L  
Sbjct: 421 IQISISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLS 480

Query: 382 QM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           +M    +  D +T+  ++   +    +D+  ++FE +
Sbjct: 481 KMKEDGIEPDRITYIAILTACSHAGLLDEGQRLFESI 517



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 122/461 (26%), Positives = 212/461 (45%), Gaps = 102/461 (22%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMS----QKNTVTYNSMISAYAKNGRVNDARKLFE 70
           V + N  I+   K G  EEA  +F  M      +N +T+ +MI+ +AK G +  AR  F+
Sbjct: 150 VADWNVMISGYWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFD 209

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM--------------------------- 103
           +MP+R++VSWN+M++GY      +E   LF+ M                           
Sbjct: 210 KMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPC 269

Query: 104 --------------FRPDLFSWALMITCYTRKGELEKARELFDLLP--NKEDTACWNAMV 147
                         FRP+ F    ++  + + G LE A ++F+ L       +  WNAM+
Sbjct: 270 LSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMI 329

Query: 148 AGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM---------E 198
           + YA++G+   AK L D MP ++ VSWNSM++GYT+NGE   A K FE M         +
Sbjct: 330 SAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPD 389

Query: 199 ERDVVS--------------------------------WNLMLDGYVELDDLDSAWKFFQ 226
           E  +VS                                +N +++ Y     +  A   FQ
Sbjct: 390 EVTMVSVFSACGHLGELGLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQ 449

Query: 227 KIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEE 282
           ++  +++VS+ T++SG+A +G  +E+  L  +M    +    + + A++ A    G ++E
Sbjct: 450 EMATRDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPDRITYIAILTACSHAGLLDE 509

Query: 283 AARLF--IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA-QTAMISGYVQN 339
             RLF  I+ P+ +   +  MID   R  +L+EA +L+  MP +  A    ++++    +
Sbjct: 510 GQRLFESIKFPDVD--HYACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATSIH 567

Query: 340 KRMD----EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
           K+++     A ++F K+  H+   + ++   YA  GR  E 
Sbjct: 568 KQVELGELAAAKLF-KVEPHNSGNYALLSNIYASAGRWKEG 607



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 173/346 (50%), Gaps = 23/346 (6%)

Query: 8   IGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMS---QKNTVTYNSMISAYAKNGRVND 64
           +G + +Y F +   +    K G +E A KIF Q+     +++V +N+MISAYA+ G +  
Sbjct: 282 VGFRPNY-FVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPS 340

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF------RPDLFSWALMITCY 118
           A+ LF++MPQR+ VSWNSMIAGY  N +  +A +LF++M       +PD  +   + +  
Sbjct: 341 AKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSAC 400

Query: 119 TRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN 175
              GEL        +L         + +N+++  Y++ G+  +A  +   M ++++VS+N
Sbjct: 401 GHLGELGLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYN 460

Query: 176 SMLSGYTKNGE----MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ 231
           +++SG+ ++G     + L SK  E   E D +++  +L        LD   + F+ I   
Sbjct: 461 TLISGFAEHGHGMESIELLSKMKEDGIEPDRITYIAILTACSHAGLLDEGQRLFESIKFP 520

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE----EAARL 286
           +V  +  M+    R GR+ EA +L   MP+  +   + +++ A     Q+E     AA+L
Sbjct: 521 DVDHYACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKL 580

Query: 287 FIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAM 332
           F   P  N  ++  + + Y    +  E  ++ D M  + +   T +
Sbjct: 581 FKVEP-HNSGNYALLSNIYASAGRWKEGDKVRDTMRKQGVKKTTGL 625


>gi|302819822|ref|XP_002991580.1| hypothetical protein SELMODRAFT_478 [Selaginella moellendorffii]
 gi|300140613|gb|EFJ07334.1| hypothetical protein SELMODRAFT_478 [Selaginella moellendorffii]
          Length = 560

 Score =  360 bits (924), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 190/562 (33%), Positives = 310/562 (55%), Gaps = 10/562 (1%)

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           D  SW  MI  YT+ G   +A  +F+++P +  T    +MV  YA+      +K + D +
Sbjct: 1   DDVSWGAMIKAYTQAGHFVEAVRMFEIVPERS-TVAMTSMVVAYAENDALEISKVMFDRI 59

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
           P ++ VSW ++LS    NG +      F+ M +R    W  ML  Y +  DL++    F 
Sbjct: 60  PERDPVSWTALLSVNATNGHLVEVINIFDRMPKRSWRCWQTMLSAYSDHGDLENTKLTFA 119

Query: 227 KIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
            +P +  VSW  +L  YA+ G +  A+  FD+MP  + V+W  +  AY QRG I+E+   
Sbjct: 120 TMPYRGSVSWNALLGAYAQTGHLESAKEFFDRMPQCDTVSWTIVSEAYAQRGHIQESRWF 179

Query: 287 FIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEAN 346
           F  +P+R+ VSW +++  Y R A +D+ARR+ + +   N+ +   MI+ Y QN   DEA 
Sbjct: 180 FDNVPDRDLVSWNSIMSAYARRALIDDARRVFEGILRPNVFSWNTMIAAYTQNGHFDEAR 239

Query: 347 QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQ---IRQ 403
           ++F ++   +VV WN ++  Y++ G + EA  +F +M  KD+++WN+++  YAQ   I +
Sbjct: 240 RVFGEMPRKNVVSWNTLLAAYSERGMLCEAKEMFDRMPQKDVISWNSLVTAYAQNGHILR 299

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS 463
           +  A +IF+ M + R+ +SWN +I+ + Q+    + + +F +M   G+  D  TL   L 
Sbjct: 300 VAAAREIFDTM-RERDLISWNTMIAAYAQSGDGEEGIHLFRIMDLYGEAPDSITLIAVLD 358

Query: 464 ACAHLAALQLGRQIHHLAIKSGYVND----LFVGNSLITMYAKCGRIQNAELLFKDADPV 519
           AC    +L+ G+ I H AI++G   D    L V  +L+ MY   G ++ A   F+     
Sbjct: 359 ACTAARSLERGKTI-HAAIRAGTRLDLTTHLLVLTALVNMYGNLGCVELAMEAFQGIQRR 417

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
           DV +W ++I  +A NG+   A++LF E  +EG+ PD V F+ +L+ACSH GL+  G   F
Sbjct: 418 DVTAWTAVIVAHARNGHGGAALELFREFGLEGMQPDAVAFLSILTACSHAGLLYSGRDFF 477

Query: 580 ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
             +   Y +   +EHY C+ID+L R G+L+ A E+++GM  K +   W TLLGAC+   +
Sbjct: 478 VALHGDYNVGVTLEHYRCVIDMLGRLGQLELAEEVIRGMPFKADFVSWVTLLGACKTQGD 537

Query: 640 IKLGRIAVEKLSELEPQKTSCY 661
              G+   E  S L+P   S Y
Sbjct: 538 AHRGQRVAEAASSLDPGVASPY 559



 Score =  276 bits (706), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 156/549 (28%), Positives = 276/549 (50%), Gaps = 51/549 (9%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           + V++ +MI AY + G   +A ++FE +P+R+ V+  SM+  Y  ND ++ ++ +FD++ 
Sbjct: 1   DDVSWGAMIKAYTQAGHFVEAVRMFEIVPERSTVAMTSMVVAYAENDALEISKVMFDRIP 60

Query: 105 RPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLD 164
             D  SW  +++     G L +   +FD +P K    CW  M++ Y+  G+    K    
Sbjct: 61  ERDPVSWTALLSVNATNGHLVEVINIFDRMP-KRSWRCWQTMLSAYSDHGDLENTKLTFA 119

Query: 165 AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKF 224
            MP +  VSWN++L  Y + G +  A +FF+ M + D VSW ++ + Y +   +  +  F
Sbjct: 120 TMPYRGSVSWNALLGAYAQTGHLESAKEFFDRMPQCDTVSWTIVSEAYAQRGHIQESRWF 179

Query: 225 FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA 284
           F  +P++++VSW +++S YAR   + +ARR+F+ +   NV +WN MIAAY Q G  +EA 
Sbjct: 180 FDNVPDRDLVSWNSIMSAYARRALIDDARRVFEGILRPNVFSWNTMIAAYTQNGHFDEAR 239

Query: 285 RLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK---R 341
           R+F EMP +N VSW T++  Y     L EA+ + D+MP K++ +  ++++ Y QN    R
Sbjct: 240 RVFGEMPRKNVVSWNTLLAAYSERGMLCEAKEMFDRMPQKDVISWNSLVTAYAQNGHILR 299

Query: 342 MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM------------------ 383
           +  A +IFD +   D++ WN MI  YAQ G  +E I+LFR M                  
Sbjct: 300 VAAAREIFDTMRERDLISWNTMIAAYAQSGDGEEGIHLFRIMDLYGEAPDSITLIAVLDA 359

Query: 384 ------------------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRN 419
                                   +   ++    ++  Y  +  ++ A++ F+ + +RR+
Sbjct: 360 CTAARSLERGKTIHAAIRAGTRLDLTTHLLVLTALVNMYGNLGCVELAMEAFQGI-QRRD 418

Query: 420 TVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHH 479
             +W A+I    +N     AL++F     EG + D       L+AC+H   L  GR    
Sbjct: 419 VTAWTAVIVAHARNGHGGAALELFREFGLEGMQPDAVAFLSILTACSHAGLLYSGRDF-F 477

Query: 480 LAIKSGYVNDLFVGN--SLITMYAKCGRIQNAELLFKDAD-PVDVISWNSLIAGYAINGN 536
           +A+   Y   + + +   +I M  + G+++ AE + +      D +SW +L+      G+
Sbjct: 478 VALHGDYNVGVTLEHYRCVIDMLGRLGQLELAEEVIRGMPFKADFVSWVTLLGACKTQGD 537

Query: 537 ATEAIKLFE 545
           A    ++ E
Sbjct: 538 AHRGQRVAE 546



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 172/320 (53%), Gaps = 17/320 (5%)

Query: 2   KASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGR 61
           K +  ++  +GS   + N  +    ++G +E A + F +M Q +TV++  +  AYA+ G 
Sbjct: 115 KLTFATMPYRGS--VSWNALLGAYAQTGHLESAKEFFDRMPQCDTVSWTIVSEAYAQRGH 172

Query: 62  VNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRK 121
           + ++R  F+ +P R+LVSWNS+++ Y     + +AR +F+ + RP++FSW  MI  YT+ 
Sbjct: 173 IQESRWFFDNVPDRDLVSWNSIMSAYARRALIDDARRVFEGILRPNVFSWNTMIAAYTQN 232

Query: 122 GELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
           G  ++AR +F  +P K +   WN ++A Y++ G   EAK++ D MP K+++SWNS+++ Y
Sbjct: 233 GHFDEARRVFGEMPRK-NVVSWNTLLAAYSERGMLCEAKEMFDRMPQKDVISWNSLVTAY 291

Query: 182 TKNGEM---HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ------KIPEQ- 231
            +NG +     A + F+ M ERD++SWN M+  Y +  D +     F+      + P+  
Sbjct: 292 AQNGHILRVAAAREIFDTMRERDLISWNTMIAAYAQSGDGEEGIHLFRIMDLYGEAPDSI 351

Query: 232 ---NVVSWVTMLSGYARNGRMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQIEEAARLF 287
               V+   T      R   +  A R   ++ +  +++   A++  Y   G +E A   F
Sbjct: 352 TLIAVLDACTAARSLERGKTIHAAIRAGTRLDLTTHLLVLTALVNMYGNLGCVELAMEAF 411

Query: 288 IEMPERNPVSWTTMIDGYVR 307
             +  R+  +WT +I  + R
Sbjct: 412 QGIQRRDVTAWTAVIVAHAR 431



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 160/311 (51%), Gaps = 23/311 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF+ N  I    ++G  +EA ++F +M +KN V++N++++AY++ G + +A+++F++MPQ
Sbjct: 219 VFSWNTMIAAYTQNGHFDEARRVFGEMPRKNVVSWNTLLAAYSERGMLCEAKEMFDRMPQ 278

Query: 75  RNLVSWNSMIAGYLHND---KVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           ++++SWNS++  Y  N    +V  ARE+FD M   DL SW  MI  Y + G+ E+   LF
Sbjct: 279 KDVISWNSLVTAYAQNGHILRVAAAREIFDTMRERDLISWNTMIAAYAQSGDGEEGIHLF 338

Query: 132 ---DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP-------SKNIVSWNSMLSGY 181
              DL     D+    A++       +    K +  A+        + +++   ++++ Y
Sbjct: 339 RIMDLYGEAPDSITLIAVLDACTAARSLERGKTIHAAIRAGTRLDLTTHLLVLTALVNMY 398

Query: 182 TKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWV 237
              G + LA + F+ ++ RDV +W  ++  +       +A + F++      + + V+++
Sbjct: 399 GNLGCVELAMEAFQGIQRRDVTAWTAVIVAHARNGHGGAALELFREFGLEGMQPDAVAFL 458

Query: 238 TMLSGYARNGRMLEARRLF-----DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP- 291
           ++L+  +  G +   R  F     D      +  +  +I    + GQ+E A  +   MP 
Sbjct: 459 SILTACSHAGLLYSGRDFFVALHGDYNVGVTLEHYRCVIDMLGRLGQLELAEEVIRGMPF 518

Query: 292 ERNPVSWTTMI 302
           + + VSW T++
Sbjct: 519 KADFVSWVTLL 529


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  360 bits (924), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 223/669 (33%), Positives = 348/669 (52%), Gaps = 73/669 (10%)

Query: 124 LEKARELFDLLPN--KEDTACW--NAMVAGYAKIGNYNEA----KKLLDAMPSKNIVSWN 175
           L+ AR+ F+L     + D A +  N+++ GY+  G   EA     ++L    + N  ++ 
Sbjct: 76  LDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFP 135

Query: 176 SMLSGYTKNGEMHLASKFFEAME----------ERDVVSWNLMLDGYVELDDLDSAWKFF 225
            +LSG TK       + F E ++          E DV   N ++  Y E   +D   K F
Sbjct: 136 FVLSGCTK------IAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVF 189

Query: 226 QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM---PIR-------------------- 262
           + + E+NVVSW +++ GYAR  R  EA  LF +M    IR                    
Sbjct: 190 EGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLD 249

Query: 263 ----------------NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYV 306
                           N V  NA++  Y++ G I+ A RLF E  +RN V + T++  Y 
Sbjct: 250 MGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYA 309

Query: 307 RIAKLDEARRLLDQM----PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW-- 360
           R     EA  +LD+M    P  +     + IS   Q   +         +  + +  W  
Sbjct: 310 RQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDS 369

Query: 361 --NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRR 418
             NV+I  Y +CG+ + A  +F  M NK +V+WN++ AG+ +   ++ A ++F ++   R
Sbjct: 370 IGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQI-PER 428

Query: 419 NTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIH 478
           N V WN +ISG +Q     DA+++F  M  EG KAD  T+    SAC +L A +L + +H
Sbjct: 429 NAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVH 488

Query: 479 HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNAT 538
               K+G   D+ +  +L+ M+A+CG  Q+A  +F      DV +W + I   A+ GN  
Sbjct: 489 TYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGE 548

Query: 539 EAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACM 598
            A  LF +M+++GV PD V F+ VL+ACSH G V+ GL +F  M E + I P +EHY CM
Sbjct: 549 GATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLM-EDHGISPQIEHYGCM 607

Query: 599 IDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKT 658
           +DLL RAG L EAF+++K M ++PN  +WG+LL ACR+H+N+++   A E+++EL PQ+ 
Sbjct: 608 VDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRA 667

Query: 659 SCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTA 718
             + LLSN++A AG+W +V +VR+++   G +K PG S ++V   IH F SGD       
Sbjct: 668 GVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMT 727

Query: 719 EICNTLKTL 727
            I   L+ +
Sbjct: 728 HIALMLQEM 736



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 135/528 (25%), Positives = 231/528 (43%), Gaps = 68/528 (12%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           +++    N +I  YA+ G ++   K+FE M +RN+VSW S+I GY   D+ KEA  LF +
Sbjct: 163 EEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFE 222

Query: 103 M----FRPDLFSWALMITCYTRKGEL---EKARELFDLLPNKEDTACWNAMVAGYAKIGN 155
           M     RP   +   +I+   +  +L   E+       L  K +    NA+V  Y K G 
Sbjct: 223 MVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGA 282

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDG 211
            + AK+L D    +N+V +N++LS Y + G    A    + M ++    D V+    +  
Sbjct: 283 IDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISA 342

Query: 212 YVELDDLDSAWKFFQKIPEQNVV-----SWVT----MLSGYARNGRMLEARRLFDQMPIR 262
             +L DL     F+ K+    V+      W +    ++  Y + G+   A R+FD M  +
Sbjct: 343 SAQLVDL-----FYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNK 397

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
            VV+WN++ A +++ G +E A  +F ++PERN V W TMI G V+ +  ++A  L  +M 
Sbjct: 398 TVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQ 457

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH--------DVVCWNVMIKGYAQCGRMD 374
            + I A    + G         A ++   + T+        D+     ++  +A+CG   
Sbjct: 458 GEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQ 517

Query: 375 EAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
            A+ +F +M  +D+  W   I   A     + A  +F +M           LI       
Sbjct: 518 SAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQM-----------LI------- 559

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN 494
                         +G K D       L+AC+H   ++ G  I  L    G    +    
Sbjct: 560 --------------QGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMEDHGISPQIEHYG 605

Query: 495 SLITMYAKCGRIQNAELLFKD--ADPVDVISWNSLIAGYAINGNATEA 540
            ++ +  + G ++ A  L K    +P DV+ W SL+A   ++ N   A
Sbjct: 606 CMVDLLGRAGLLREAFDLIKSMPMEPNDVV-WGSLLAACRVHKNVEMA 652



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 103/476 (21%), Positives = 205/476 (43%), Gaps = 62/476 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF QN  I    + G ++   K+F  MS++N V++ S+I  YA+  R  +A  LF +M +
Sbjct: 166 VFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVE 225

Query: 75  R---------------------------------------NLVSWNSMIAGYLHNDKVKE 95
                                                   N V  N+++  Y+    +  
Sbjct: 226 AGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDA 285

Query: 96  ARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAK 152
           A+ LFD+    +L  +  +++ Y R+G   +A  + D +     + D     + ++  A+
Sbjct: 286 AKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQ 345

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNS----MLSGYTKNGEMHLASKFFEAMEERDVVSWNLM 208
           + +    K     +    +  W+S    ++  Y K G+  +A + F+ M  + VVSWN +
Sbjct: 346 LVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSL 405

Query: 209 LDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN 268
             G++   D++SAW+ F +IPE+N V W TM+SG  +     +A  LF +M    + A  
Sbjct: 406 TAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADR 465

Query: 269 AM---IAAYVQRGQIEEAARLFIEMPERNPVSW-----TTMIDGYVRIAKLDEARRLLDQ 320
                IA+        E A+      E+N +       T ++D + R      A ++ ++
Sbjct: 466 VTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNK 525

Query: 321 MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEA 376
           M  ++++A TA I         + A  +F+++       DVV +  ++   +  G++++ 
Sbjct: 526 MTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQG 585

Query: 377 INLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
           +++F  M    ++  I  +  M+    +   + +A  + + M    N V W +L++
Sbjct: 586 LHIFSLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLA 641



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 123/273 (45%), Gaps = 16/273 (5%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K G+ E A ++F  MS K  V++NS+ + + +NG V  A ++F Q+P+RN V WN+MI+G
Sbjct: 380 KCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISG 439

Query: 87  YLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKE---D 139
            +     ++A ELF +M     + D  +   + +     G  E A+ +   +       D
Sbjct: 440 LVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCD 499

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM-- 197
                A+V  +A+ G+   A ++ + M  +++ +W + +      G    A+  F  M  
Sbjct: 500 MRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLI 559

Query: 198 --EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLE 251
              + DVV +  +L        ++     F  + +  +   +     M+    R G + E
Sbjct: 560 QGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMEDHGISPQIEHYGCMVDLLGRAGLLRE 619

Query: 252 ARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEA 283
           A  L   MP+  N V W +++AA      +E A
Sbjct: 620 AFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMA 652


>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 783

 Score =  360 bits (924), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 224/717 (31%), Positives = 365/717 (50%), Gaps = 71/717 (9%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----F 104
           N ++  Y+K GR+ DAR+LF+ MP RNLVSW S I+ Y  + +  +A  LF         
Sbjct: 69  NLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGREDDALLLFAAFPSAGAA 128

Query: 105 RPD-------LFSWALMITCYTRKGEL-EKARELFDLLPNKEDTACWNAMVAGYAKIGNY 156
            PD       L + AL     +R     E+   +   L    +     A+V  YAK G  
Sbjct: 129 SPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNLYAKAGRI 188

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLD------ 210
           + A  + DA+P++N V+W ++++GY++ G+  +A + F  M    V     +L       
Sbjct: 189 DAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVLASAASAC 248

Query: 211 ---GYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
              G+VE       + + +   E +      ++  Y +  R+L ARRLFD M  RN+V+W
Sbjct: 249 SGLGFVEGGRQIHGYAY-RTAAESDASVVNALIDLYCKCSRLLLARRLFDSMENRNLVSW 307

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
             MIA Y+Q     EA  +F ++ +     +  + T++++    +A + + R++   +  
Sbjct: 308 TTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVHAHVIK 367

Query: 324 KNIAA----QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
            ++ +    + A+I  Y + + + EA  +F+ +   D + +N MI+GYA+ G +  A+ +
Sbjct: 368 ADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYARLGDLTGAVEI 427

Query: 380 FRQM---------------------------------------VNKDIVTWNTMIAGYAQ 400
           F +M                                        + D+   + +I  Y++
Sbjct: 428 FGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKSGTSLDLYAGSALIDVYSK 487

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
              +DDA  +F  M + R+ V WNA+I G  QNE   +A+K+F  +   G   +  T   
Sbjct: 488 FSLVDDAKLVFSLM-QNRDMVIWNAMIFGLAQNERGEEAVKLFARLRVSGLTPNEFTFVA 546

Query: 461 ALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVD 520
            ++  + LA++  G+Q H   IK+G  +D  + N+LI MYAKCG I+   LLF+     D
Sbjct: 547 LVTVASTLASIFHGQQFHAQIIKAGADSDPHISNALIDMYAKCGFIEEGRLLFESTLGKD 606

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE 580
           VI WNS+I+ YA +G+A EA+ +F  M   GV P+ VTF+ VLSAC+H GLVD GL  F 
Sbjct: 607 VICWNSMISTYAQHGHAEEALHVFGMMEGAGVEPNYVTFVSVLSACAHAGLVDEGLHHFN 666

Query: 581 CMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNI 640
            M   YA+EP  EHYA +++L  R+G+L  A E ++ M I+P A IW +LL AC +  N+
Sbjct: 667 SMKTKYAVEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPVATIWRSLLSACHLFGNV 726

Query: 641 KLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSW 697
           ++GR A E     +P  +    L+SN++A  G W + +K+R  M+ +G  K+PG SW
Sbjct: 727 EIGRYATEMALLADPADSGPSVLMSNIYASKGLWADAQKLRQGMDCAGVVKEPGYSW 783



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 142/534 (26%), Positives = 229/534 (42%), Gaps = 117/534 (21%)

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
           D+   NL+L GY +L  L  A + F  +P +N+VSW + +S YA++GR  +A  LF   P
Sbjct: 64  DLFLANLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGREDDALLLFAAFP 123

Query: 261 --------------------IR-------------------------NVVAWNAMIAAYV 275
                               +R                         NV    A++  Y 
Sbjct: 124 SAGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNLYA 183

Query: 276 QRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI--------- 326
           + G+I+ A  +F  +P RNPV+WT +I GY +  +   A  L  +M    +         
Sbjct: 184 KAGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVLAS 243

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
           AA      G+V+  R       +      D    N +I  Y +C R+  A  LF  M N+
Sbjct: 244 AASACSGLGFVEGGRQIH-GYAYRTAAESDASVVNALIDLYCKCSRLLLARRLFDSMENR 302

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446
           ++V+W TMIAGY                                +QN    +A+ +F  +
Sbjct: 303 NLVSWTTMIAGY--------------------------------MQNSLDTEAMSMFWQL 330

Query: 447 TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI 506
           +Q G + D       L++C  LAA+  GRQ+H   IK+   +D +V N+LI MYAKC  +
Sbjct: 331 SQAGWQPDVFACTSILNSCGSLAAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHL 390

Query: 507 QNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
             A  +F+     D IS+N++I GYA  G+ T A+++F +M    + P  +TF+ +L   
Sbjct: 391 TEARAVFEALAEDDAISYNAMIEGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVS 450

Query: 567 S-----------HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV 615
           S           H  +V  G  L     ++YA   L       ID+ S+   +D+A ++V
Sbjct: 451 SSRSDLELSKQIHGLIVKSGTSL-----DLYAGSAL-------IDVYSKFSLVDDA-KLV 497

Query: 616 KGMKIKPNAGIWGTLLGAC----RMHQNIKLGRIAVEKLSELEPQKTSCYALLS 665
             +    +  IW  ++       R  + +KL   A  ++S L P + +  AL++
Sbjct: 498 FSLMQNRDMVIWNAMIFGLAQNERGEEAVKL--FARLRVSGLTPNEFTFVALVT 549



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 160/326 (49%), Gaps = 40/326 (12%)

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMG 415
           D+   N++++GY++ GR+ +A  LF  M ++++V+W + I+ YAQ  + DDA+ +F    
Sbjct: 64  DLFLANLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGREDDALLLFA--- 120

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
                                  A       + +G+  +   LA AL ACA   A + G 
Sbjct: 121 -----------------------AFPSAGAASPDGEPPNEFLLASALRACAQSRAARFGE 157

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
           Q+H +A K G   ++FVG +L+ +YAK GRI  A  +F      + ++W ++I GY+  G
Sbjct: 158 QVHGVAAKLGLDANVFVGTALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQAG 217

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHY 595
            A  A++LF  M ++GV PD        SACS +G V+GG ++       YA     E  
Sbjct: 218 QAGVALELFGRMGLDGVRPDRFVLASAASACSGLGFVEGGRQI-----HGYAYRTAAESD 272

Query: 596 A----CMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVE-KL 650
           A     +IDL  +  RL  A  +   M+ + N   W T++ A  M  ++    +++  +L
Sbjct: 273 ASVVNALIDLYCKCSRLLLARRLFDSMENR-NLVSWTTMI-AGYMQNSLDTEAMSMFWQL 330

Query: 651 SEL--EPQKTSCYALLSNMHAEAGRW 674
           S+   +P   +C ++L++  + A  W
Sbjct: 331 SQAGWQPDVFACTSILNSCGSLAAIW 356



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 12/174 (6%)

Query: 457 TLACALSACAHLAALQLGRQI---HHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
           +LA  L +C  LA  +L R +   H  A+ SG + DLF+ N L+  Y+K GR+ +A  LF
Sbjct: 31  SLAQLLLSC--LAGDRLRRVLPPAHARAVVSGLLPDLFLANLLLRGYSKLGRLGDARRLF 88

Query: 514 KDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA------PDPVTFIGVLSACS 567
                 +++SW S I+ YA +G   +A+ LF      G A      P+       L AC+
Sbjct: 89  DSMPSRNLVSWGSAISMYAQHGREDDALLLFAAFPSAGAASPDGEPPNEFLLASALRACA 148

Query: 568 HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIK 621
                  G ++     ++  ++  V     +++L ++AGR+D A  +   +  +
Sbjct: 149 QSRAARFGEQVHGVAAKL-GLDANVFVGTALVNLYAKAGRIDAAMSVFDALPAR 201


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 208/616 (33%), Positives = 332/616 (53%), Gaps = 85/616 (13%)

Query: 114 MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS 173
           +++ Y   G+L++ R +FD +  K++   WN MV+ YAKIG++ E+  L   M  K I  
Sbjct: 2   LVSFYATCGDLKEGRRVFDTM-EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEG 60

Query: 174 WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI----P 229
             S             AS+ F+ + +RDV+SWN M+ GYV     +     ++++     
Sbjct: 61  KRS-----------ESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGI 109

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQMPI-----RNVVAWNAMIAAYVQRGQIEEAA 284
           + ++ + +++L G A++G  L   +    + I     R +   N ++  Y + G ++ A 
Sbjct: 110 DVDLATIISVLVGCAKSG-TLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGAL 168

Query: 285 RLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK----NIAAQTAMISGYVQNK 340
           R+F +M ERN VSWT+MI GY R    D A  LL QM  +    ++ A T+++    ++ 
Sbjct: 169 RVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSG 228

Query: 341 RMDEANQIFDKIGTHDV-----VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMI 395
            +D    + D I  +++     VC N ++  YA+CG M+ A ++F  MV KDI       
Sbjct: 229 SLDNGKDVHDYIKANNMASNLFVC-NALMDMYAKCGSMEGANSVFSTMVVKDI------- 280

Query: 396 AGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADH 455
                                    +SWN ++                        K D 
Sbjct: 281 -------------------------ISWNTMVGEL---------------------KPDS 294

Query: 456 STLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD 515
            T+AC L ACA L+AL+ G++IH   +++GY +D  V N+L+ +Y KCG +  A LLF  
Sbjct: 295 RTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDM 354

Query: 516 ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
               D++SW  +IAGY ++G   EAI  F EM   G+ PD V+FI +L ACSH GL++ G
Sbjct: 355 IPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQG 414

Query: 576 LKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACR 635
            + F  M   + IEP +EHYACM+DLLSR G L +A++ ++ + I P+A IWG LL  CR
Sbjct: 415 WRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCR 474

Query: 636 MHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGC 695
           ++ +I+L     E++ ELEP+ T  Y LL+N++AEA +W+EV+++R  +   G +K PGC
Sbjct: 475 IYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGC 534

Query: 696 SWIEVKNQIHTFLSGD 711
           SWIE+K +++ F+SG+
Sbjct: 535 SWIEIKGRVNLFVSGN 550



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 109/473 (23%), Positives = 203/473 (42%), Gaps = 64/473 (13%)

Query: 20  KKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG------------------- 60
           K ++     G ++E  ++F  M +KN   +N M+S YAK G                   
Sbjct: 1   KLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEG 60

Query: 61  -RVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMI 115
            R   A +LF+++  R+++SWNSMI+GY+ N   +    ++ +M       DL +   ++
Sbjct: 61  KRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVL 120

Query: 116 TCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV 172
               + G L   + +  L      +      N ++  Y+K G+ + A ++ + M  +N+V
Sbjct: 121 VGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVV 180

Query: 173 SWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKI 228
           SW SM++GYT++G    A    + ME+     DVV+   +L        LD+       I
Sbjct: 181 SWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYI 240

Query: 229 PEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIA------------ 272
              N+ S +     ++  YA+ G M  A  +F  M ++++++WN M+             
Sbjct: 241 KANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACI 300

Query: 273 -------AYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
                  + ++RG+      L         V+   ++D YV+   L  AR L D +P K+
Sbjct: 301 LPACASLSALERGKEIHGYILRNGYSSDRHVA-NALVDLYVKCGVLGLARLLFDMIPSKD 359

Query: 326 IAAQTAMISGYVQNKRMDEA----NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
           + + T MI+GY  +   +EA    N++ D     D V +  ++   +  G +++    F 
Sbjct: 360 LVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFY 419

Query: 382 QMVNK-----DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
            M N       +  +  M+   ++   +  A K  E +    +   W AL+ G
Sbjct: 420 IMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCG 472



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 153/379 (40%), Gaps = 71/379 (18%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR-- 75
            N  +    K G ++ A+++F +M ++N V++ SMI+ Y ++G  + A  L +QM +   
Sbjct: 151 SNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGV 210

Query: 76  -------------------------------------NLVSWNSMIAGYLHNDKVKEARE 98
                                                NL   N+++  Y     ++ A  
Sbjct: 211 KLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANS 270

Query: 99  LFDKMFRPDLFSWALMI---------------TCYTRKGELEKARELFD-LLPN--KEDT 140
           +F  M   D+ SW  M+                C +    LE+ +E+   +L N    D 
Sbjct: 271 VFSTMVVKDIISWNTMVGELKPDSRTMACILPACASLSA-LERGKEIHGYILRNGYSSDR 329

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME-- 198
              NA+V  Y K G    A+ L D +PSK++VSW  M++GY  +G  + A   F  M   
Sbjct: 330 HVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDA 389

Query: 199 --ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-----EQNVVSWVTMLSGYARNGRMLE 251
             E D VS+  +L        L+  W+FF  +      E  +  +  M+   +R G + +
Sbjct: 390 GIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSK 449

Query: 252 ARRLFDQMPIR-NVVAWNAMIAA---YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVR 307
           A +  + +PI  +   W A++     Y      E+ A    E+   N   +  + + Y  
Sbjct: 450 AYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAE 509

Query: 308 IAKLDEARRLLDQMPYKNI 326
             K +E +R+ +++  K +
Sbjct: 510 AEKWEEVKRMREKIGKKGL 528



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 121/299 (40%), Gaps = 72/299 (24%)

Query: 10  NKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISA-------------- 55
           N  S +F  N  +    K G +E A  +FS M  K+ +++N+M+                
Sbjct: 244 NMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPA 303

Query: 56  -----------------------------------YAKNGRVNDARKLFEQMPQRNLVSW 80
                                              Y K G +  AR LF+ +P ++LVSW
Sbjct: 304 CASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSW 363

Query: 81  NSMIAGY-LH---NDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL-- 134
             MIAGY +H   N+ +    E+ D    PD  S+  ++   +  G LE+    F ++  
Sbjct: 364 TVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKN 423

Query: 135 -----PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNGEMH 188
                P  E  AC   MV   ++ GN ++A K ++ +P + +   W ++L G     ++ 
Sbjct: 424 DFNIEPKLEHYAC---MVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIE 480

Query: 189 LASKFFE---AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV-----VSWVTM 239
           LA K  E    +E  +   + L+ + Y E +  +   +  +KI ++ +      SW+ +
Sbjct: 481 LAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEI 539


>gi|449443642|ref|XP_004139586.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449492832|ref|XP_004159115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 663

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 203/607 (33%), Positives = 326/607 (53%), Gaps = 19/607 (3%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N+++  Y K      A+++   +   ++ SWN M+ GY+K  EM  A   F  M ERD V
Sbjct: 32  NSIIDMYIKCDAIYAAEQVFLRIEKPSLFSWNCMIYGYSKLHEMGRAIDTFRQMPERDSV 91

Query: 204 SWNLMLDGY----VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYA-----RNGRMLEARR 254
           SWN ++  +    + +  L +  + + +  + N +++ ++LS  A     + G+ L AR 
Sbjct: 92  SWNTIISAFSHHGLHIQSLGTFVEMWIQGCQPNSMTYASVLSACANIYDFQWGKHLHAR- 150

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
           +    P  +V+  N ++  Y + G I+ + R+F  + E N V+WT++I G       +E 
Sbjct: 151 IVRVEPFLDVLVGNGLVDMYAKCGLIDASKRVFNTLREHNVVTWTSLISGIAHFGSQEEV 210

Query: 315 RRLLDQMPYKNIAAQT---AMISGYVQ---NKRMDEANQIFD-KIGTHDVV-CWNVMIKG 366
             +  QM    +       A I G  +   N  + E    F  K G +  V   N  +  
Sbjct: 211 YDIFYQMRKDCVIMDNFILATILGVCEGETNISIGEQLHGFTVKTGMNSSVPVGNATLSM 270

Query: 367 YAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNAL 426
           YA+CG  ++A   F  M   D+++W TMI  ++    ++ A   F  M   RN +SWNA+
Sbjct: 271 YAKCGDFEKASLAFETMAAHDVISWTTMITSFSHSGNVERARDYFNRM-PERNVISWNAM 329

Query: 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
           +  + QN F  + LK+++LM ++  + D  T    + AC+ LA  +LG QI   A+K G 
Sbjct: 330 LGAYCQNSFWEEGLKLYILMLRQEVRPDWITFVTMIGACSELAISKLGTQILSQAVKVGL 389

Query: 487 VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEE 546
            +D+ V NS IT+Y++CGRI+ A+ LF      ++ISWNS++ GYA NG   + I++F+ 
Sbjct: 390 GSDVSVVNSAITLYSRCGRIEEAQNLFDSIQEKNLISWNSIMGGYAQNGEGMKVIEIFQN 449

Query: 547 MVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAG 606
           M+M G  PD +T+I +LS CSH GLV      F  MT+ + I   +EH+ CM+DL  RAG
Sbjct: 450 MLMAGCKPDHITYIAILSGCSHSGLVKEAKYHFNSMTKDFGISVTLEHFVCMVDLFGRAG 509

Query: 607 RLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSN 666
            L  A +M+  M  KPNA IWG LL ACR+H + ++  +A++ L EL  +    Y LL+N
Sbjct: 510 LLKLALDMIDQMPFKPNASIWGALLSACRIHHDTEMAELAMKNLLELNTENFESYILLAN 569

Query: 667 MHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKT 726
            ++  GR + V +VR  M+    QK PGCSWIEV N++H F + D    +  +I   L+ 
Sbjct: 570 TYSSFGRLECVSEVRQVMKEKRVQKDPGCSWIEVCNRVHVFTANDTSHPQVKDIYKALED 629

Query: 727 LAAQIRN 733
           +  +I++
Sbjct: 630 IVKKIKD 636



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 111/457 (24%), Positives = 210/457 (45%), Gaps = 58/457 (12%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           QN  I    K   +  A ++F ++ + +  ++N MI  Y+K   +  A   F QMP+R+ 
Sbjct: 31  QNSIIDMYIKCDAIYAAEQVFLRIEKPSLFSWNCMIYGYSKLHEMGRAIDTFRQMPERDS 90

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDL 133
           VSWN++I+ + H+    ++   F +M+    +P+  ++A +++      + +  + L   
Sbjct: 91  VSWNTIISAFSHHGLHIQSLGTFVEMWIQGCQPNSMTYASVLSACANIYDFQWGKHLHAR 150

Query: 134 LPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           +   E   D    N +V  YAK G  + +K++ + +   N+V+W S++SG    G     
Sbjct: 151 IVRVEPFLDVLVGNGLVDMYAKCGLIDASKRVFNTLREHNVVTWTSLISGIAHFGSQEEV 210

Query: 191 SKFFEAMEERDVVSWNLM---------------------------------------LDG 211
              F  M +  V+  N +                                       L  
Sbjct: 211 YDIFYQMRKDCVIMDNFILATILGVCEGETNISIGEQLHGFTVKTGMNSSVPVGNATLSM 270

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
           Y +  D + A   F+ +   +V+SW TM++ ++ +G +  AR  F++MP RNV++WNAM+
Sbjct: 271 YAKCGDFEKASLAFETMAAHDVISWTTMITSFSHSGNVERARDYFNRMPERNVISWNAML 330

Query: 272 AAYVQRGQIEEAARLFIEM--PERNP--VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
            AY Q    EE  +L+I M   E  P  +++ TMI     +A      ++L Q     + 
Sbjct: 331 GAYCQNSFWEEGLKLYILMLRQEVRPDWITFVTMIGACSELAISKLGTQILSQAVKVGLG 390

Query: 328 AQTAMISG----YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
           +  ++++     Y +  R++EA  +FD I   +++ WN ++ GYAQ G   + I +F+ M
Sbjct: 391 SDVSVVNSAITLYSRCGRIEEAQNLFDSIQEKNLISWNSIMGGYAQNGEGMKVIEIFQNM 450

Query: 384 V----NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
           +      D +T+  +++G +    + +A   F  M K
Sbjct: 451 LMAGCKPDHITYIAILSGCSHSGLVKEAKYHFNSMTK 487



 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 157/328 (47%), Gaps = 29/328 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  ++   K G  E+A   F  M+  + +++ +MI++++ +G V  AR  F +MP+RN++
Sbjct: 265 NATLSMYAKCGDFEKASLAFETMAAHDVISWTTMITSFSHSGNVERARDYFNRMPERNVI 324

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDLL 134
           SWN+M+  Y  N   +E  +L+  M     RPD   W   +T      EL  ++    +L
Sbjct: 325 SWNAMLGAYCQNSFWEEGLKLYILMLRQEVRPD---WITFVTMIGACSELAISKLGTQIL 381

Query: 135 PNK------EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
                     D +  N+ +  Y++ G   EA+ L D++  KN++SWNS++ GY +NGE  
Sbjct: 382 SQAVKVGLGSDVSVVNSAITLYSRCGRIEEAQNLFDSIQEKNLISWNSIMGGYAQNGEGM 441

Query: 189 LASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTM 239
              + F+ M     + D +++  +L G      +  A   F  + +   +S     +V M
Sbjct: 442 KVIEIFQNMLMAGCKPDHITYIAILSGCSHSGLVKEAKYHFNSMTKDFGISVTLEHFVCM 501

Query: 240 LSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAA---YVQRGQIEEAARLFIEMPERNP 295
           +  + R G +  A  + DQMP + N   W A+++A   +      E A +  +E+   N 
Sbjct: 502 VDLFGRAGLLKLALDMIDQMPFKPNASIWGALLSACRIHHDTEMAELAMKNLLELNTENF 561

Query: 296 VSWTTMIDGYVRIAKLD---EARRLLDQ 320
            S+  + + Y    +L+   E R+++ +
Sbjct: 562 ESYILLANTYSSFGRLECVSEVRQVMKE 589



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 107/204 (52%), Gaps = 14/204 (6%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS V   N  IT   + GR+EEA  +F  + +KN +++NS++  YA+NG      ++F+ 
Sbjct: 390 GSDVSVVNSAITLYSRCGRIEEAQNLFDSIQEKNLISWNSIMGGYAQNGEGMKVIEIFQN 449

Query: 72  M----PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP-----DLFSWALMITCYTRKG 122
           M     + + +++ ++++G  H+  VKEA+  F+ M +       L  +  M+  + R G
Sbjct: 450 MLMAGCKPDHITYIAILSGCSHSGLVKEAKYHFNSMTKDFGISVTLEHFVCMVDLFGRAG 509

Query: 123 ELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNE----AKKLLDAMPSKNIVSWNSML 178
            L+ A ++ D +P K + + W A+++   +I +  E    A K L  + ++N  S+  + 
Sbjct: 510 LLKLALDMIDQMPFKPNASIWGALLSA-CRIHHDTEMAELAMKNLLELNTENFESYILLA 568

Query: 179 SGYTKNGEMHLASKFFEAMEERDV 202
           + Y+  G +   S+  + M+E+ V
Sbjct: 569 NTYSSFGRLECVSEVRQVMKEKRV 592



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 94/203 (46%), Gaps = 37/203 (18%)

Query: 464 ACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL----------- 512
           AC+ +  +++  Q+H L+ K G+ N+  + NS+I MY KC  I  AE +           
Sbjct: 2   ACSSVGYIRIAHQLHGLSEKYGFGNNKVIQNSIIDMYIKCDAIYAAEQVFLRIEKPSLFS 61

Query: 513 --------------------FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
                               F+     D +SWN++I+ ++ +G   +++  F EM ++G 
Sbjct: 62  WNCMIYGYSKLHEMGRAIDTFRQMPERDSVSWNTIISAFSHHGLHIQSLGTFVEMWIQGC 121

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYA--CMIDLLSRAGRLDE 610
            P+ +T+  VLSAC+++     G  L      +  +EP ++      ++D+ ++ G +D 
Sbjct: 122 QPNSMTYASVLSACANIYDFQWGKHLH---ARIVRVEPFLDVLVGNGLVDMYAKCGLIDA 178

Query: 611 AFEMVKGMKIKPNAGIWGTLLGA 633
           +  +   ++ + N   W +L+  
Sbjct: 179 SKRVFNTLR-EHNVVTWTSLISG 200


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 221/785 (28%), Positives = 378/785 (48%), Gaps = 158/785 (20%)

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           F P ++    ++  Y +  ++  A ++FD +P + D   WN ++ GYA IGN   A+ L 
Sbjct: 37  FVPTIYVANCLLQFYCKSSKMNYAFKVFDRMPQR-DVISWNTLIFGYAGIGNMGFAQSLF 95

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME------------------------- 198
           D+MP +++VSWNS+LS Y  NG    + + F  M                          
Sbjct: 96  DSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFAVILKACSGIEDYG 155

Query: 199 --------------ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYA 244
                         E DVV+ + ++D Y +   LD A++ F+++PE+N+V W  +++GY 
Sbjct: 156 LGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDDAFRVFREMPERNLVCWSAVIAGYV 215

Query: 245 RNGRMLEARRLFDQM----------------------------------PIRNVVAWNAM 270
           +N R +E  +LF  M                                   +++  A++++
Sbjct: 216 QNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSI 275

Query: 271 IAA-----YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           I       Y +  ++ +A ++F  +P     S+  +I GY R  +  +A  +   +   N
Sbjct: 276 IGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNN 335

Query: 326 IAAQTAMISGY------------------------------VQNKRMD---------EAN 346
           +      +SG                               V N  +D         EA 
Sbjct: 336 LGFDEISLSGALTACSVIKRHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALMEAC 395

Query: 347 QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF----RQMVNKDIVTWNTMI---AG-- 397
            IF+++   D V WN +I  + Q   + + ++LF    R  +  D  T+ +++   AG  
Sbjct: 396 LIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQ 455

Query: 398 ------------------------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
                                         Y +   + +A KI   + + + TVSWN++I
Sbjct: 456 ALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARL-EEKTTVSWNSII 514

Query: 428 SGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV 487
           SGF   +   +A + F  M + G   D+ T A  L  CA++A ++LG+QIH   +K    
Sbjct: 515 SGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATIELGKQIHAQILKLQLH 574

Query: 488 NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
           +D+++ ++L+ MY+KCG +Q++ L+F+ A   D ++W+++I  YA +G   +AI LFEEM
Sbjct: 575 SDVYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTWSAMICAYAYHGLGEKAINLFEEM 634

Query: 548 VMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGR 607
            +  V P+   FI VL AC+H+G VD GL  F+ M   Y ++P +EHY+CM+DLL R+G+
Sbjct: 635 QLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQKMLSHYGLDPQMEHYSCMVDLLGRSGQ 694

Query: 608 LDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNM 667
           ++EA ++++ M  + +  IW TLL  C+M  N+++   A   L +L+PQ +S Y LL+N+
Sbjct: 695 VNEALKLIESMPFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLANV 754

Query: 668 HAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
           +A  G W EV K+R  M+    +K+PGCSWIEV++++HTFL GD    R+ EI      L
Sbjct: 755 YAIVGMWGEVAKMRSIMKNCKLKKEPGCSWIEVRDEVHTFLVGDKAHPRSEEIYEQTHLL 814

Query: 728 AAQIR 732
             +++
Sbjct: 815 VDEMK 819



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 178/388 (45%), Gaps = 42/388 (10%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           N    N+++  Y K G + +A  +FE+M +R+ VSWN++IA +  N+++ +   LF  M 
Sbjct: 374 NICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSML 433

Query: 105 R----PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACW---NAMVAGYAKIGNYN 157
           R    PD F++  ++     +  L    E+   +        W   +A+V  Y K G   
Sbjct: 434 RSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLM 493

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV----SWNLMLDGYV 213
           EA+K+   +  K  VSWNS++SG++   +   A ++F  M E  ++    ++  +LD   
Sbjct: 494 EAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCA 553

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNVVAWNA 269
            +  ++   +   +I +  + S V    T++  Y++ G M ++R +F++ P R+ V W+A
Sbjct: 554 NMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTWSA 613

Query: 270 MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY--KNIA 327
           MI AY   G  E+A  LF EM   N     T+    +R             M Y  K + 
Sbjct: 614 MICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLRACA---------HMGYVDKGLH 664

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNK 386
               M+S Y  + +M+  + + D +G               + G+++EA+ L   M    
Sbjct: 665 YFQKMLSHYGLDPQMEHYSCMVDLLG---------------RSGQVNEALKLIESMPFEA 709

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           D V W T+++       ++ A K F  +
Sbjct: 710 DDVIWRTLLSNCKMQGNVEVAEKAFNSL 737



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 100/489 (20%), Positives = 205/489 (41%), Gaps = 105/489 (21%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K  ++++A ++F +M ++N V ++++I+ Y +N R  +  KLF+ M +  +    S  A 
Sbjct: 185 KCKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYAS 244

Query: 87  YLHN----DKVKEARELFDKMFRPDLFSWALMITC----YTRKGELEKARELFDLLPNKE 138
              +       K   +L     + D    +++ T     Y +   +  A ++F+ LPN  
Sbjct: 245 VFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPP 304

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----------------------------- 169
             + +NA++ GYA+    ++  K LD   S                              
Sbjct: 305 RQS-YNAIIVGYAR---QDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGI 360

Query: 170 -------------NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELD 216
                        NI   N++L  Y K G +  A   FE ME RD VSWN ++  + + +
Sbjct: 361 QLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNE 420

Query: 217 DLDSAWKFFQKI------PE-------------QNVVSWVTMLSG--------------- 242
           ++      F  +      P+             Q  +++ T + G               
Sbjct: 421 EIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGS 480

Query: 243 -----YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV- 296
                Y + G ++EA ++  ++  +  V+WN++I+ +  + Q E A R F +M E   + 
Sbjct: 481 ALVDMYGKCGMLMEAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIP 540

Query: 297 ---SWTTMIDGYVRIAKLDEARRLLDQM----PYKNIAAQTAMISGYVQNKRMDEANQIF 349
              ++ T++D    +A ++  +++  Q+     + ++   + ++  Y +   M ++  +F
Sbjct: 541 DNYTYATVLDVCANMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMF 600

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMD 405
           +K    D V W+ MI  YA  G  ++AINLF +M    V  +   + +++   A +  +D
Sbjct: 601 EKAPKRDYVTWSAMICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLRACAHMGYVD 660

Query: 406 DAVKIFEEM 414
             +  F++M
Sbjct: 661 KGLHYFQKM 669



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 91/209 (43%), Gaps = 35/209 (16%)

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
           T +  L  C++L AL  G+Q+H   I +G+V  ++V N L+  Y K  ++  A  +F   
Sbjct: 8   TFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDRM 67

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP---------------------- 554
              DVISWN+LI GYA  GN   A  LF+ M    V                        
Sbjct: 68  PQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFV 127

Query: 555 ---------DPVTFIGVLSACSHVGLVDGGLKL-FECMTEVYAIEPLVEHYACMIDLLSR 604
                    D  TF  +L ACS  G+ D GL L   C+      E  V   + ++D+ S+
Sbjct: 128 RMRSLKIPHDYATFAVILKACS--GIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSK 185

Query: 605 AGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
             +LD+AF + + M  + N   W  ++  
Sbjct: 186 CKKLDDAFRVFREMP-ERNLVCWSAVIAG 213



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 135/288 (46%), Gaps = 26/288 (9%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           +   GK G + EA KI +++ +K TV++NS+IS ++   +  +A++ F QM +  ++  N
Sbjct: 483 VDMYGKCGMLMEAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDN 542

Query: 82  SMIAGYL----HNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDL 133
              A  L    +   ++  +++  ++ +     D++  + ++  Y++ G ++ +R +F+ 
Sbjct: 543 YTYATVLDVCANMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEK 602

Query: 134 LPNKEDTACWNAMVAGYAKIG------NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
            P K D   W+AM+  YA  G      N  E  +LL+  P+  I  + S+L      G +
Sbjct: 603 AP-KRDYVTWSAMICAYAYHGLGEKAINLFEEMQLLNVKPNHTI--FISVLRACAHMGYV 659

Query: 188 HLASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSWVTMLS 241
                +F+ M         +  ++ M+D       ++ A K  + +P E + V W T+LS
Sbjct: 660 DKGLHYFQKMLSHYGLDPQMEHYSCMVDLLGRSGQVNEALKLIESMPFEADDVIWRTLLS 719

Query: 242 GYARNGRMLEARRLFD---QMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
                G +  A + F+   Q+  ++  A+  +   Y   G   E A++
Sbjct: 720 NCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYAIVGMWGEVAKM 767



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 78/163 (47%), Gaps = 9/163 (5%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V+  +  +    K G ++++  +F +  +++ VT+++MI AYA +G    A  LFE+M
Sbjct: 575 SDVYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTWSAMICAYAYHGLGEKAINLFEEM 634

Query: 73  PQRNLVSWNSMIAGYL----HNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGE 123
              N+   +++    L    H   V +    F KM       P +  ++ M+    R G+
Sbjct: 635 QLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQKMLSHYGLDPQMEHYSCMVDLLGRSGQ 694

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           + +A +L + +P + D   W  +++     GN   A+K  +++
Sbjct: 695 VNEALKLIESMPFEADDVIWRTLLSNCKMQGNVEVAEKAFNSL 737


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 232/737 (31%), Positives = 380/737 (51%), Gaps = 74/737 (10%)

Query: 25  LGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMI 84
           LGK  ++   +  F   S  +    N++++ Y K G + DA K+F+++ +R+ VSWNS+I
Sbjct: 28  LGK--QIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYKVFDRITERDQVSWNSII 85

Query: 85  AGYLHNDK----VKEARELFDKMFRPDLF---SWALMITCYTRKGELEKARELFDLLPNK 137
           +     ++    +K  R +  + F P  F   S AL  +   ++  L   +++      K
Sbjct: 86  SALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRK 145

Query: 138 ED--TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
               T   NA++A YAK+G  ++AK LL     +++V+WNSM+S +++N     A  F  
Sbjct: 146 GHWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLR 205

Query: 196 AME----ERDVVSWNLMLDGYVELDDLDS-----AWKFFQKIPEQNVVSWVTMLSGYARN 246
            M     + D V++  +L     LD L +     A+        +N      ++  Y   
Sbjct: 206 LMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNC 265

Query: 247 GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE-----RNPVSWTTM 301
           G++   R +FD +  R +  WNAMIA Y Q    E+A  LFIEM        N  + +++
Sbjct: 266 GQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSI 325

Query: 302 IDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWN 361
           +  YVR   +                ++   I GYV  KR  E N+             N
Sbjct: 326 VPAYVRCEGI----------------SRKEGIHGYVI-KRGLETNRYLQ----------N 358

Query: 362 VMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
            +I  Y++ G +  +  +F  M ++DIV+WNT+I  Y    +  DA+ +  EM +     
Sbjct: 359 ALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKS 418

Query: 422 SWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLA 481
           +++   +   Q  F                K +  TL   L  CA L+AL  G++IH  A
Sbjct: 419 TYDGDYNDEKQVPF----------------KPNSITLMTVLPGCASLSALAKGKEIHAYA 462

Query: 482 IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
           I++   + + VG++L+ MYAKCG +  A  +F      +VI+WN +I  Y ++G   E++
Sbjct: 463 IRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKESL 522

Query: 542 KLFEEMVMEG-----VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYA 596
           +LFE+MV EG     V P  VTFI + ++CSH G+VD GL LF  M   + IEP  +HYA
Sbjct: 523 ELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYA 582

Query: 597 CMIDLLSRAGRLDEAFEMVKGMKIK-PNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEP 655
           C++DL+ RAG+++EA+ +V  M       G W +LLGACR++ NI++G IA E L +L+P
Sbjct: 583 CIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEIAAENLLQLQP 642

Query: 656 QKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQC 715
              S Y LLSN+++ AG WD+   +R  M+  G +K+PGCSWIE  +++H FL+GD    
Sbjct: 643 DVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVHKFLAGDLSHP 702

Query: 716 RTAEICNTLKTLAAQIR 732
           ++ ++ + L+TL+ +++
Sbjct: 703 QSEKLHDFLETLSERLK 719



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 81/176 (46%), Gaps = 17/176 (9%)

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY--VNDLFVGNSLITMYAKC 503
           M   G   D+      L A A +  L LG+QIH    K GY   + + + N+L+ MY KC
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
           G + +A  +F      D +SWNS+I+          AIK F  M+MEG  P   T + + 
Sbjct: 61  GGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMA 120

Query: 564 SACSHVGLVDG---GLKLFECMT-----EVYAIEPLVEHYACMIDLLSRAGRLDEA 611
            ACS++   DG   G ++  C         ++   L+  YA       + GRLD+A
Sbjct: 121 LACSNLRKRDGLWLGKQIHGCCFRKGHWRTFSNNALMAMYA-------KLGRLDDA 169



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 86/378 (22%), Positives = 162/378 (42%), Gaps = 75/378 (19%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           QN  I    + G ++ + +IF  M  ++ V++N++I++Y   GR +DA  L  +M QR  
Sbjct: 357 QNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEM-QR-- 413

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF-----D 132
           +   S   G  +++K           F+P+  +   ++        L K +E+      +
Sbjct: 414 IEEKSTYDGDYNDEK--------QVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRN 465

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
           LL ++      +A+V  YAK G  N A+++ D MP +N+++WN ++  Y  +G+   + +
Sbjct: 466 LLASQ--VTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLE 523

Query: 193 FFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA 252
            FE M                    +    K  +  P +  V+++ + +  + +G + E 
Sbjct: 524 LFEDM--------------------VAEGAKGGEVKPTE--VTFIALFASCSHSGMVDEG 561

Query: 253 RRLFDQMP----IRNVVAWNAMIAAYVQR-GQIEEAARLFIEMPE--RNPVSWTTMIDGY 305
             LF +M     I       A I   V R G++EEA  L   MP       +W++++   
Sbjct: 562 LSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLG-- 619

Query: 306 VRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIK 365
                   A R+   +    IAA+  +              Q+   + +H V+  N+   
Sbjct: 620 --------ACRIYHNIEIGEIAAENLL--------------QLQPDVASHYVLLSNI--- 654

Query: 366 GYAQCGRMDEAINLFRQM 383
            Y+  G  D+A+NL R+M
Sbjct: 655 -YSSAGLWDKAMNLRRRM 671


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 212/654 (32%), Positives = 337/654 (51%), Gaps = 46/654 (7%)

Query: 114 MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS--KNI 171
           +I  YT   +L  A  LF   P         ++VA YA       A    DA+P   ++ 
Sbjct: 65  LIHLYTLSRDLPAAATLFCADPCPVSA---TSLVAAYAAADRLPAAVSFFDAVPPARRDT 121

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ 231
           V  N+++S Y +      A   F ++    + S +L  D Y     L SA      I  +
Sbjct: 122 VLHNAVISAYARASHAAPAVAVFRSL----LASGSLRPDDY-SFTALLSAGGHLPNISVR 176

Query: 232 NVVSWVTMLSGYARNGRM-------------------LEARRLFDQMPIRNVVAWNAMIA 272
           +       +      G +                    +AR++ D+MP ++ + W  M+ 
Sbjct: 177 HCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVV 236

Query: 273 AYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA----RRL------LDQMP 322
            YV+RG +  A  +F E+  +  V W  MI GYV      EA    RR+      LD+  
Sbjct: 237 GYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFT 296

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIF----DKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
           + ++ +  A +  +   K +    QI     + +    +   N ++  Y++CG +  A  
Sbjct: 297 FTSVLSACANVGLFAHGKSVH--GQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARR 354

Query: 379 LFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
           +F  M  KD+V+WNT+++GY +   +D AV++FEEM   +N +SW  ++SG++   F  D
Sbjct: 355 IFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEM-PYKNELSWMVMVSGYVHGGFAED 413

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
           ALK+F  M  E  K    T A A++AC  L AL+ G+Q+H   ++ G+      GN+LIT
Sbjct: 414 ALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALIT 473

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           MYA+CG ++ A L+F     +D +SWN++I+    +G+  EA++LF+ MV EG+ PD ++
Sbjct: 474 MYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRIS 533

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
           F+ VL+AC+H GLVD G + FE M   + I P  +HY  +IDLL RAGR+ EA +++K M
Sbjct: 534 FLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTM 593

Query: 619 KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVE 678
             +P   IW  +L  CR   +++LG  A ++L ++ PQ    Y LLSN ++ AG W +  
Sbjct: 594 PFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAA 653

Query: 679 KVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +VR  M   G +K+PGCSWIE  N++H FL GD K     E+   L+ + A++R
Sbjct: 654 RVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEMVGAKMR 707



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 191/394 (48%), Gaps = 29/394 (7%)

Query: 33  EAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDK 92
           +A K+  +M  K+ +T+ +M+  Y + G V  AR +FE++  +  V WN+MI+GY+H+  
Sbjct: 215 DARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGM 274

Query: 93  VKEARELFDKMFRP----DLFSWALMITCYTRKGELEKAR----ELFDLLPNKEDTACW- 143
             EA ELF +M       D F++  +++     G     +    ++  L PN    A   
Sbjct: 275 AVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALP 334

Query: 144 --NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
             NA+V  Y+K GN   A+++ D M  K++VSWN++LSGY ++  +  A + FE M  ++
Sbjct: 335 VNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKN 394

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFD 257
            +SW +M+ GYV     + A K F K+  +NV     ++   ++     G +   ++L  
Sbjct: 395 ELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHG 454

Query: 258 QMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDE 313
            +          A NA+I  Y + G ++EA  +F+ MP  + VSW  MI    +     E
Sbjct: 455 HIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGRE 514

Query: 314 ARRLLDQMP----YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC-----WNVMI 364
           A  L D+M     Y +  +   +++    +  +DE  + F+ +     +      +  +I
Sbjct: 515 ALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLI 574

Query: 365 KGYAQCGRMDEAINLFRQMVNKDIVT-WNTMIAG 397
               + GR+ EA +L + M  +   + W  +++G
Sbjct: 575 DLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSG 608



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 109/418 (26%), Positives = 200/418 (47%), Gaps = 45/418 (10%)

Query: 50  NSMISAYAK---NGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP 106
           N++++ Y K        DARK+ ++MP ++ ++W +M+ GY+    V  AR +F+++   
Sbjct: 198 NALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGK 257

Query: 107 DLFSWALMITCYTRKGELEKARELF-----DLLPNKEDTACWNAMVAGYAKIGNYNEAKK 161
               W  MI+ Y   G   +A ELF     + +P  E T  + ++++  A +G +   K 
Sbjct: 258 FDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFT--FTSVLSACANVGLFAHGKS 315

Query: 162 L--------LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV 213
           +         + +P   +   N++++ Y+K G + +A + F+ M  +DVVSWN +L GYV
Sbjct: 316 VHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYV 375

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNA 269
           E   LD A + F+++P +N +SW+ M+SGY   G   +A +LF++M   NV      +  
Sbjct: 376 ESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAG 435

Query: 270 MIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
            IAA  + G ++   +L   +     E +  +   +I  Y R   + EA  +   MP  +
Sbjct: 436 AIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNID 495

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKI---GTH-DVVCWNVMIKGYAQCGRMDEAINLFR 381
             +  AMIS   Q+    EA ++FD++   G + D + +  ++      G +DE    F 
Sbjct: 496 SVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFE 555

Query: 382 QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS----------WNALISG 429
            M  +D      +I G     ++ D +     +G+ R+ +           W A++SG
Sbjct: 556 SM-KRDF----GIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSG 608



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 149/299 (49%), Gaps = 25/299 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +T   K G +  A +IF  M+ K+ V++N+++S Y ++  ++ A ++FE+MP +N +
Sbjct: 337 NALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNEL 396

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDL- 133
           SW  M++GY+H    ++A +LF+KM     +P  +++A  I      G L+  ++L    
Sbjct: 397 SWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHI 456

Query: 134 --LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
             L  +   +  NA++  YA+ G   EA  +   MP+ + VSWN+M+S   ++G    A 
Sbjct: 457 VQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREAL 516

Query: 192 KFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQK-------IPEQNVVSWVTML 240
           + F+ M       D +S+  +L        +D  +++F+        IP ++   +  ++
Sbjct: 517 ELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGED--HYTRLI 574

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVA-WNAMIAAYVQRGQIEEAA----RLFIEMPERN 294
               R GR+ EAR L   MP     + W A+++     G +E  A    +LF   P+ +
Sbjct: 575 DLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHD 633



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 169/395 (42%), Gaps = 66/395 (16%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL----VSWNS 82
           + G V  A  +F ++  K  V +N+MIS Y  +G   +A +LF +M    +     ++ S
Sbjct: 240 RRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTS 299

Query: 83  MIAGYLHNDKVKEARELFDKMFR--PDLFSWA------LMITCYTRKGELEKARELFDLL 134
           +++   +       + +  ++ R  P+    A       ++T Y++ G +  AR +FD +
Sbjct: 300 VLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNM 359

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
             K D   WN +++GY +    ++A ++ + MP KN +SW  M+SGY   G    A K F
Sbjct: 360 TLK-DVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLF 418

Query: 195 EAMEERDVVSWNLMLDGYV----ELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARN 246
             M   +V   +    G +    EL  L    +    I     E +  +   +++ YAR 
Sbjct: 419 NKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARC 478

Query: 247 GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PERNPV---- 296
           G + EA  +F  MP  + V+WNAMI+A  Q G   EA  LF  M      P+R       
Sbjct: 479 GAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVL 538

Query: 297 ------------------------------SWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
                                          +T +ID   R  ++ EAR L+  MP++  
Sbjct: 539 TACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPT 598

Query: 327 AAQ-TAMISGYVQNKRMD----EANQIFDKIGTHD 356
            +   A++SG   +  M+     A+Q+F     HD
Sbjct: 599 PSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHD 633


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 243/760 (31%), Positives = 374/760 (49%), Gaps = 121/760 (15%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----RPD 107
           ++  Y   GR  DA  LF ++  R  + WN MI G         A   + KM      PD
Sbjct: 52  VLGLYVLCGRFRDAGNLFFELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPD 111

Query: 108 LFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP 167
            +++  +I          KA    + +P          MV        ++ A+ L   + 
Sbjct: 112 KYTFPYVI----------KACGGLNNVPL--------CMVV-------HDTARSLGFHV- 145

Query: 168 SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK 227
             ++ + ++++  Y  NG +  A + F+ +  RD + WN+ML GYV+  D D+A   F +
Sbjct: 146 --DLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCE 203

Query: 228 IPEQ----NVVSWVTMLS-----------------------------------GYARNGR 248
           +       N V++  +LS                                    Y++ G 
Sbjct: 204 MRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGN 263

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMI-- 302
           +L AR+LF+ MP  + V WN +IA YVQ G  +EAA LF  M     + + V++ + +  
Sbjct: 264 LLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPS 323

Query: 303 ---DGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
               G +R  K   +  +  ++P+ ++  ++A+I  Y +   ++ A +IF +    DV  
Sbjct: 324 ILESGSLRHCKEVHSYIVRHRVPF-DVYLKSALIDVYFKGGDVEMARKIFQQNILVDVAV 382

Query: 360 WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAG---------------------- 397
              MI GY   G   +AIN FR ++ + +VT +  +A                       
Sbjct: 383 CTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELHCHIL 442

Query: 398 -----------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
                            YA+  ++D A + F  M  R ++V WN++IS F QN     A+
Sbjct: 443 KKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDR-DSVCWNSMISSFSQNGKPEIAI 501

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500
            +F  M   G K D  +L+ ALSA A+L AL  G+++H   I++ + +D FV ++LI MY
Sbjct: 502 DLFRQMGMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYVIRNAFSSDTFVASTLIDMY 561

Query: 501 AKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
           +KCG +  A  +F   D  + +SWNS+IA Y  +G   E + L+ EM+  G+ PD VTF+
Sbjct: 562 SKCGNLALAWCVFNLMDGKNEVSWNSIIAAYGNHGCPRECLDLYHEMLRAGIHPDHVTFL 621

Query: 561 GVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKI 620
            ++SAC H GLVD G+  F CMT  Y I   +EHYACM+DL  RAGR+ EAF+ +K M  
Sbjct: 622 VIISACGHAGLVDEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRVHEAFDTIKSMPF 681

Query: 621 KPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKV 680
            P+AG+WGTLLGACR+H N++L ++A   L EL+P+ +  Y LLSN+HA+AG W  V KV
Sbjct: 682 TPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHADAGEWASVLKV 741

Query: 681 RVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           R  M+  G QK PG SWI+V    H F + D     + EI
Sbjct: 742 RSLMKEKGVQKIPGYSWIDVNGGTHMFSAADGNHPESVEI 781



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 137/604 (22%), Positives = 250/604 (41%), Gaps = 105/604 (17%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F  +  I     +G + +A ++F ++  ++T+ +N M+  Y K+G  ++A   F +M  
Sbjct: 147 LFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRT 206

Query: 75  R----NLVSWNSMI----------AGY-LHNDKVKEARELFDKMFRPDLFSWALMITCYT 119
                N V++  ++          AG  LH   +    E     F P + +   ++  Y+
Sbjct: 207 SYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFE-----FDPQVAN--TLVAMYS 259

Query: 120 RKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWN 175
           + G L  AR+LF+ +P + DT  WN ++AGY + G  +EA  L +AM S  +    V++ 
Sbjct: 260 KCGNLLYARKLFNTMP-QTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFA 318

Query: 176 SMLSGYTKNGEM-HLASKFFEAMEER---DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ 231
           S L    ++G + H        +  R   DV   + ++D Y +  D++ A K FQ+    
Sbjct: 319 SFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILV 378

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
           +V     M+SGY  +G  ++A   F  +               +Q G +           
Sbjct: 379 DVAVCTAMISGYVLHGLNIDAINTFRWL---------------IQEGMVT---------- 413

Query: 292 ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN----IAAQTAMISGYVQNKRMDEANQ 347
             N ++  +++     +A L   + L   +  K     +   +A+   Y +  R+D A +
Sbjct: 414 --NSLTMASVLPACAAVAALKPGKELHCHILKKRLENIVNVGSAITDMYAKCGRLDLAYE 471

Query: 348 IFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM------------------------ 383
            F ++   D VCWN MI  ++Q G+ + AI+LFRQM                        
Sbjct: 472 FFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAAANLPA 531

Query: 384 ---------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
                           + D    +T+I  Y++   +  A  +F  M   +N VSWN++I+
Sbjct: 532 LYYGKEMHGYVIRNAFSSDTFVASTLIDMYSKCGNLALAWCVFNLM-DGKNEVSWNSIIA 590

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS-GYV 487
            +  +    + L ++  M + G   DH T    +SAC H   +  G    H   +  G  
Sbjct: 591 AYGNHGCPRECLDLYHEMLRAGIHPDHVTFLVIISACGHAGLVDEGIHYFHCMTREYGIG 650

Query: 488 NDLFVGNSLITMYAKCGRIQNAELLFKDAD-PVDVISWNSLIAGYAINGNATEAIKLFEE 546
             +     ++ +Y + GR+  A    K      D   W +L+    ++GN  E  KL   
Sbjct: 651 ARMEHYACMVDLYGRAGRVHEAFDTIKSMPFTPDAGVWGTLLGACRLHGN-VELAKLASR 709

Query: 547 MVME 550
            ++E
Sbjct: 710 HLLE 713



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 129/307 (42%), Gaps = 43/307 (14%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
           +K  L++I N GS + +         K GR++ A + F +MS +++V +NSMIS++++NG
Sbjct: 442 LKKRLENIVNVGSAITDM------YAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNG 495

Query: 61  RVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTR 120
           +   A  LF QM                  D V  +  L      P L+        Y +
Sbjct: 496 KPEIAIDLFRQMGMSG-----------AKFDSVSLSSALSAAANLPALY--------YGK 536

Query: 121 KGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG 180
           +      R  F       DT   + ++  Y+K GN   A  + + M  KN VSWNS+++ 
Sbjct: 537 EMHGYVIRNAF-----SSDTFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVSWNSIIAA 591

Query: 181 YTKNG----EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS- 235
           Y  +G     + L  +   A    D V++ +++        +D    +F  +  +  +  
Sbjct: 592 YGNHGCPRECLDLYHEMLRAGIHPDHVTFLVIISACGHAGLVDEGIHYFHCMTREYGIGA 651

Query: 236 ----WVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE---EAARLF 287
               +  M+  Y R GR+ EA      MP   +   W  ++ A    G +E    A+R  
Sbjct: 652 RMEHYACMVDLYGRAGRVHEAFDTIKSMPFTPDAGVWGTLLGACRLHGNVELAKLASRHL 711

Query: 288 IEMPERN 294
           +E+  +N
Sbjct: 712 LELDPKN 718



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 14/178 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S  F  +  I    K G +  A  +F+ M  KN V++NS+I+AY  +G   +   L+ +M
Sbjct: 549 SDTFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVSWNSIIAAYGNHGCPRECLDLYHEM 608

Query: 73  PQRNL----VSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGE 123
            +  +    V++  +I+   H   V E    F  M R       +  +A M+  Y R G 
Sbjct: 609 LRAGIHPDHVTFLVIISACGHAGLVDEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGR 668

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
           + +A +    +P   D   W  ++      GN   AK     + S++++  +   SGY
Sbjct: 669 VHEAFDTIKSMPFTPDAGVWGTLLGACRLHGNVELAK-----LASRHLLELDPKNSGY 721



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 52/103 (50%)

Query: 464 ACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
           AC+  + +Q  RQ+H   I  G  +     + ++ +Y  CGR ++A  LF + +    + 
Sbjct: 20  ACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFFELELRYALP 79

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
           WN +I G  + G    A+  + +M+   V+PD  TF  V+ AC
Sbjct: 80  WNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKAC 122


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 196/564 (34%), Positives = 311/564 (55%), Gaps = 17/564 (3%)

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV----SWVTML 240
           G+M  A   F+ M   +   WN M+ GY  +   +SA   + ++ E+ V+    ++  +L
Sbjct: 67  GDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLL 126

Query: 241 SGYARNGRMLEARRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
             + R+  +   R L D +       NV   NA+I  Y   G++  A  +F    + + V
Sbjct: 127 KRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVV 186

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFDKI 352
           +W  MI GY R  + DE+ +L D+M    +   +    +++S   + K ++   ++   +
Sbjct: 187 TWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYV 246

Query: 353 GTHDV----VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAV 408
               +    V  N +I  YA CG MD A+ +F  M ++D+++W  ++ G+  + Q+  A 
Sbjct: 247 KDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLAR 306

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
             F++M   R+ VSW A+I G+LQ     + L +F  M     K D  T+   L+ACAHL
Sbjct: 307 NYFDKM-PERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHL 365

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
            AL+LG  I     K+    D FVGN+LI MY  CG ++ A  +F      D ISW ++I
Sbjct: 366 GALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVI 425

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI 588
            G AING   EA+ +F +M+   + PD VT IGVL AC+H G+VD G K F  MT  + I
Sbjct: 426 FGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGI 485

Query: 589 EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVE 648
           EP V HY CM+DLL RAG L EA E++K M +KPN+ +WG+LLGACR+H++ ++  +A +
Sbjct: 486 EPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQ 545

Query: 649 KLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFL 708
           ++ ELEP+  + Y LL N++A   RW+++ +VR  M   G +K PGCS IE+   +H F+
Sbjct: 546 QILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFV 605

Query: 709 SGDPKQCRTAEICNTLKTLAAQIR 732
           +GD    ++ EI + L  ++  ++
Sbjct: 606 AGDQVHPQSKEIYSKLDEMSVDLK 629



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 121/500 (24%), Positives = 225/500 (45%), Gaps = 57/500 (11%)

Query: 60  GRVNDARKLFEQMPQRNLVSWNSMIAGY----LHNDKVKEARELFDKMFRPDLFSWALMI 115
           G +  AR +F+ MP  N   WN+MI GY      N  V    E+ ++   PD +++  ++
Sbjct: 67  GDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLL 126

Query: 116 TCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN 175
             +TR   ++  REL D +                 K+G             S N+   N
Sbjct: 127 KRFTRDTAVKCGRELHDHI----------------VKLGF------------SSNVFVQN 158

Query: 176 SMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV-- 233
           +++  Y+ +GE+ +A   F+   + DVV+WN+M+ GY      D + K F ++    V  
Sbjct: 159 ALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLP 218

Query: 234 --VSWVTMLSGYARNGRMLEARRLFDQM------PIRNVVAWNAMIAAYVQRGQIEEAAR 285
             ++ V++LS  ++   +   +R+   +      P+R  V  NA+I  Y   G ++ A  
Sbjct: 219 SSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVR--VLENALIDMYAACGDMDTALG 276

Query: 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
           +F  M  R+ +SWT ++ G+  + ++  AR   D+MP ++  + TAMI GY+Q  R  E 
Sbjct: 277 IFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEV 336

Query: 346 NQIFDKIGTHDV----VCWNVMIKGYAQCGRMD--EAINLF--RQMVNKDIVTWNTMIAG 397
             +F ++   ++         ++   A  G ++  E I  +  +  +  D    N +I  
Sbjct: 337 LSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDM 396

Query: 398 YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHST 457
           Y     ++ A++IF  M   R+ +SW A+I G   N +  +AL +F  M +     D  T
Sbjct: 397 YFNCGNVEKAIRIFNAM-PHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVT 455

Query: 458 LACALSACAHLAALQLGRQIH-HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
               L AC H   +  G++    +  + G   ++     ++ +  + G ++ A  + K+ 
Sbjct: 456 CIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNM 515

Query: 517 DPV--DVISWNSLIAGYAIN 534
            PV  + I W SL+    ++
Sbjct: 516 -PVKPNSIVWGSLLGACRVH 534



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 192/379 (50%), Gaps = 27/379 (7%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           N    N++I  Y+ +G V+ AR +F++  + ++V+WN MI+GY  + +  E+ +LFD+M 
Sbjct: 153 NVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEME 212

Query: 105 R----PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYN 157
           R    P   +   +++  ++  +L   + +   + +   +      NA++  YA  G+ +
Sbjct: 213 RMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMD 272

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDD 217
            A  + D M S++++SW ++++G+T  G++ LA  +F+ M ERD VSW  M+DGY++++ 
Sbjct: 273 TALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNR 332

Query: 218 LDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRM-----LEARRLFDQMPIRNVVAWN 268
                  F+++   N+     + V++L+  A  G +     ++A    +++ I + V  N
Sbjct: 333 FKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVG-N 391

Query: 269 AMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA 328
           A+I  Y   G +E+A R+F  MP R+ +SWT +I G       +EA  +  QM   +I  
Sbjct: 392 ALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITP 451

Query: 329 QTAMISGYV----QNKRMDEANQIFDKIGTH-----DVVCWNVMIKGYAQCGRMDEAINL 379
                 G +     +  +D+  + F ++ T      +V  +  M+    + G + EA  +
Sbjct: 452 DEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEV 511

Query: 380 FRQM-VNKDIVTWNTMIAG 397
            + M V  + + W +++  
Sbjct: 512 IKNMPVKPNSIVWGSLLGA 530



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 157/324 (48%), Gaps = 23/324 (7%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           +N  I      G ++ A+ IF  M  ++ +++ ++++ +   G+V  AR  F++MP+R+ 
Sbjct: 258 ENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDF 317

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKA---REL 130
           VSW +MI GYL  ++ KE   LF +M     +PD F+   ++T     G LE     +  
Sbjct: 318 VSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAY 377

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG----E 186
            D    K D+   NA++  Y   GN  +A ++ +AMP ++ +SW +++ G   NG     
Sbjct: 378 IDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEA 437

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ-----NVVSWVTMLS 241
           + + S+  +A    D V+   +L        +D   KFF ++  Q     NV  +  M+ 
Sbjct: 438 LDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVD 497

Query: 242 GYARNGRMLEARRLFDQMPIR-NVVAWNAMIAA-YVQRGQ--IEEAARLFIEMPERNPVS 297
              R G + EA  +   MP++ N + W +++ A  V R +   E AA+  +E+   N   
Sbjct: 498 LLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGAV 557

Query: 298 WTTMIDGYV---RIAKLDEARRLL 318
           +  + + Y    R  KL E R+L+
Sbjct: 558 YVLLCNIYAACNRWEKLHEVRKLM 581



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 107/437 (24%), Positives = 191/437 (43%), Gaps = 63/437 (14%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S VF QN  I     SG V  A  +F + S+ + VT+N MIS Y ++ + +++ KLF++M
Sbjct: 152 SNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEM 211

Query: 73  PQ-RNLVSWNSMIA------------------GYLHNDKVKEAREL-------------- 99
            + R L S  ++++                   Y+ + K++  R L              
Sbjct: 212 ERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDM 271

Query: 100 ------FDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKI 153
                 FD M   D+ SW  ++T +T  G++  AR  FD +P + D   W AM+ GY ++
Sbjct: 272 DTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPER-DFVSWTAMIDGYLQV 330

Query: 154 GNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLAS--KFFEAMEERDVVSW-- 205
             + E   L   M + NI     +  S+L+     G + L    K +    E  + S+  
Sbjct: 331 NRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVG 390

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV- 264
           N ++D Y    +++ A + F  +P ++ +SW  ++ G A NG   EA  +F QM   ++ 
Sbjct: 391 NALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASIT 450

Query: 265 ---VAWNAMIAAYVQRGQIEEAARLFIEMP-----ERNPVSWTTMIDGYVRIAKLDEARR 316
              V    ++ A    G +++  + F  M      E N   +  M+D   R   L EA  
Sbjct: 451 PDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHE 510

Query: 317 LLDQMPYKNIAAQTAMISGYVQNKRMDE-----ANQIFDKIGTHDVVCWNVMIKGYAQCG 371
           ++  MP K  +     + G  +  R +E     A QI + +   +   + ++   YA C 
Sbjct: 511 VIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILE-LEPENGAVYVLLCNIYAACN 569

Query: 372 RMDEAINLFRQMVNKDI 388
           R ++   + + M+++ I
Sbjct: 570 RWEKLHEVRKLMMDRGI 586


>gi|124360491|gb|ABN08501.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 575

 Score =  359 bits (922), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 201/584 (34%), Positives = 336/584 (57%), Gaps = 42/584 (7%)

Query: 146 MVAGYAKIGNYNEA-----KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER 200
           M+  Y++IG +++      K +L     K   S+ S++     +  M   +   ++  +R
Sbjct: 1   MLKYYSQIGVHSQVFVSLFKHMLQHCDIKPNASFYSVMMKSAGSESMLFLAHVLKSGYDR 60

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF---- 256
           D    N +L  Y +   ++ A K F ++P++ V  W  M+SGY + G   EA  LF    
Sbjct: 61  DHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMG 120

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
           DQ   RNV+ W  MI  + ++G ++ A   F +MPER+ VSW  M+ GY +    +E  R
Sbjct: 121 DQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIR 180

Query: 317 LLDQM-------PYKNIAAQTAMISGYVQNKRMDEA--NQIFDKIGTH-DVVCWNVMIKG 366
           L + M       P +   A        + +  + E+   ++ DK+G   +      ++  
Sbjct: 181 LFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDM 240

Query: 367 YAQCGRMDEAINLFRQM---VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
           +A+CG ++ A  +F Q+     +  V WN MI+ YA++  +  A  +F++M  +R+TVSW
Sbjct: 241 HAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKM-PQRDTVSW 299

Query: 424 NALISGFLQNEFHLDALKIF--VLMTQEGKKADHSTLACALSACAHLAALQLGR------ 475
           N++I+G+ QN     A+K+F  ++ +++ +K D  T+    SAC HL  L LG       
Sbjct: 300 NSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAVSIL 359

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
           +++H+ I       + V NSLI MY++CG +Q+A L+F++    D++S+N+LI+G+A +G
Sbjct: 360 KVNHIQIS------ISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHG 413

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHY 595
           +  E+I+L  +M  +G+ PD +T+I +L+ACSH GL+D G +LFE +       P V+HY
Sbjct: 414 HGMESIELLSKMKEDGIEPDRITYIAILTACSHAGLLDEGQRLFESIKF-----PDVDHY 468

Query: 596 ACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEP 655
           ACMID+L RAGRL+EA ++++ M ++P+AGI+G+LL A  +H+ ++LG +A  KL ++EP
Sbjct: 469 ACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKLFKVEP 528

Query: 656 QKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
             +  YALLSN++A AGRW E +KVR +M   G +K  G SW+E
Sbjct: 529 HNSGNYALLSNIYASAGRWKEGDKVRDTMRKQGVKKTTGLSWLE 572



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/397 (30%), Positives = 206/397 (51%), Gaps = 34/397 (8%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF----DKMFR 105
           N ++  YAK G +  ARKLF++MP R +  WN MI+GY      +EA  LF    D+   
Sbjct: 66  NGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEIS 125

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDA 165
            ++ +W  MIT + +KG L+ AR  FD +P +     WNAM++GYA+ G   E  +L + 
Sbjct: 126 RNVITWTTMITGHAKKGNLKTARMYFDKMPERS-VVSWNAMLSGYAQGGAPEETIRLFND 184

Query: 166 MPSKNIV-----SWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL-----MLDGYVEL 215
           M S   V     +W +++S  +  G+  L+      ++++     N      +LD + + 
Sbjct: 185 MLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKC 244

Query: 216 DDLDSAWKFFQKI---PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
            +L++A K F+++     ++ V W  M+S YAR G +  A+ LFD+MP R+ V+WN+MIA
Sbjct: 245 GNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIA 304

Query: 273 AYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDE------ARRLLDQMP 322
            Y Q G+  +A +LF EM      R P    TM+  +     L E      A  +L    
Sbjct: 305 GYTQNGESFKAIKLFEEMISSEDSRKPDE-VTMVSVFSACGHLGELGLGNWAVSILKVNH 363

Query: 323 YK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
            + +I+   ++I+ Y +   M +A  IF ++ T D+V +N +I G+A+ G   E+I L  
Sbjct: 364 IQISISVYNSLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLS 423

Query: 382 QM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           +M    +  D +T+  ++   +    +D+  ++FE +
Sbjct: 424 KMKEDGIEPDRITYIAILTACSHAGLLDEGQRLFESI 460



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 122/461 (26%), Positives = 212/461 (45%), Gaps = 102/461 (22%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMS----QKNTVTYNSMISAYAKNGRVNDARKLFE 70
           V + N  I+   K G  EEA  +F  M      +N +T+ +MI+ +AK G +  AR  F+
Sbjct: 93  VADWNVMISGYWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFD 152

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM--------------------------- 103
           +MP+R++VSWN+M++GY      +E   LF+ M                           
Sbjct: 153 KMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPC 212

Query: 104 --------------FRPDLFSWALMITCYTRKGELEKARELFDLLP--NKEDTACWNAMV 147
                         FRP+ F    ++  + + G LE A ++F+ L       +  WNAM+
Sbjct: 213 LSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMI 272

Query: 148 AGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM---------E 198
           + YA++G+   AK L D MP ++ VSWNSM++GYT+NGE   A K FE M         +
Sbjct: 273 SAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPD 332

Query: 199 ERDVVS--------------------------------WNLMLDGYVELDDLDSAWKFFQ 226
           E  +VS                                +N +++ Y     +  A   FQ
Sbjct: 333 EVTMVSVFSACGHLGELGLGNWAVSILKVNHIQISISVYNSLINMYSRCGSMQDAVLIFQ 392

Query: 227 KIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEE 282
           ++  +++VS+ T++SG+A +G  +E+  L  +M    +    + + A++ A    G ++E
Sbjct: 393 EMATRDLVSYNTLISGFAEHGHGMESIELLSKMKEDGIEPDRITYIAILTACSHAGLLDE 452

Query: 283 AARLF--IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA-QTAMISGYVQN 339
             RLF  I+ P+ +   +  MID   R  +L+EA +L+  MP +  A    ++++    +
Sbjct: 453 GQRLFESIKFPDVD--HYACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATSIH 510

Query: 340 KRMD----EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
           K+++     A ++F K+  H+   + ++   YA  GR  E 
Sbjct: 511 KQVELGELAAAKLF-KVEPHNSGNYALLSNIYASAGRWKEG 550


>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53360, mitochondrial; Flags: Precursor
 gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
 gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 209/715 (29%), Positives = 372/715 (52%), Gaps = 64/715 (8%)

Query: 81  NSMIAGYLHNDKVKEARELFD-----KMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           N  I     ++  +EA E FD       F+  L ++  +I   +    L + R++ D + 
Sbjct: 35  NDHINSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHIL 94

Query: 136 N---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
           N   K DT   N +++ Y K G+  +A+++ D MP +N+VS+ S+++GY++NG+   A +
Sbjct: 95  NSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIR 154

Query: 193 FFEAMEERDVV----SWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSGYA 244
            +  M + D+V    ++  ++       D+    +   ++       ++++   +++ Y 
Sbjct: 155 LYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYV 214

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-----ERNPVSWT 299
           R  +M +A R+F  +P++++++W+++IA + Q G   EA     EM        N   + 
Sbjct: 215 RFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFG 274

Query: 300 TMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
           + +     + + D   ++    +      N  A  ++   Y +   ++ A ++FD+I   
Sbjct: 275 SSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERP 334

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQM------------------------------VN 385
           D   WNV+I G A  G  DEA+++F QM                              ++
Sbjct: 335 DTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIH 394

Query: 386 KDIVTW---------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
             I+ W         N+++  Y     +     +FE+     ++VSWN +++  LQ+E  
Sbjct: 395 SYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQP 454

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSL 496
           ++ L++F LM     + DH T+   L  C  +++L+LG Q+H  ++K+G   + F+ N L
Sbjct: 455 VEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGL 514

Query: 497 ITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
           I MYAKCG +  A  +F   D  DV+SW++LI GYA +G   EA+ LF+EM   G+ P+ 
Sbjct: 515 IDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNH 574

Query: 557 VTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVK 616
           VTF+GVL+ACSHVGLV+ GLKL+  M   + I P  EH +C++DLL+RAGRL+EA   + 
Sbjct: 575 VTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFID 634

Query: 617 GMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDE 676
            MK++P+  +W TLL AC+   N+ L + A E + +++P  ++ + LL +MHA +G W+ 
Sbjct: 635 EMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWEN 694

Query: 677 VEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
              +R SM+    +K PG SWIE++++IH F + D       +I   L  + +Q+
Sbjct: 695 AALLRSSMKKHDVKKIPGQSWIEIEDKIHIFFAEDIFHPERDDIYTVLHNIWSQM 749



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 161/350 (46%), Gaps = 30/350 (8%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           N +   S+   YA+ G +N AR++F+Q+ + +  SWN +IAG  +N    EA  +F +M 
Sbjct: 304 NAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMR 363

Query: 104 ---FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYN 157
              F PD  S   ++   T+   L +  ++   +       D    N+++  Y    +  
Sbjct: 364 SSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLY 423

Query: 158 EAKKLL-DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGY 212
               L  D   + + VSWN++L+   ++ +     + F+ M     E D ++   +L G 
Sbjct: 424 CCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGC 483

Query: 213 VELDDLDSAWKFFQK------IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA 266
           VE+  L    +           PEQ + +   ++  YA+ G + +ARR+FD M  R+VV+
Sbjct: 484 VEISSLKLGSQVHCYSLKTGLAPEQFIKN--GLIDMYAKCGSLGQARRIFDSMDNRDVVS 541

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
           W+ +I  Y Q G  EEA  LF EM     E N V++  ++     +  ++E  +L   M 
Sbjct: 542 WSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQ 601

Query: 323 YKNIAAQT-----AMISGYVQNKRMDEANQIFDKIGTH-DVVCWNVMIKG 366
            ++  + T      ++    +  R++EA +  D++    DVV W  ++  
Sbjct: 602 TEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSA 651



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 32/191 (16%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP-- 73
           F +N  I    K G + +A +IF  M  ++ V+++++I  YA++G   +A  LF++M   
Sbjct: 509 FIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSA 568

Query: 74  --QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
             + N V++  ++    H   V+E  +L+  M               T  G         
Sbjct: 569 GIEPNHVTFVGVLTACSHVGLVEEGLKLYATM--------------QTEHG--------- 605

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNGEMHLA 190
            + P KE  +C   +V   A+ G  NEA++ +D M    ++V W ++LS     G +HLA
Sbjct: 606 -ISPTKEHCSC---VVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLA 661

Query: 191 SKFFEAMEERD 201
            K  E + + D
Sbjct: 662 QKAAENILKID 672


>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 216/705 (30%), Positives = 363/705 (51%), Gaps = 62/705 (8%)

Query: 88  LHNDKVKEARELFDKMFRPDL--FSWALMITCYTRKGELEKARELFDLLPN---KEDTAC 142
           LH + +K A ++F K     L   ++  +I   +    LE  R++   +     + D   
Sbjct: 77  LHREALK-AFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMIL 135

Query: 143 WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE----MHLASKFFEAME 198
            N +++ Y K G+  EA+ + D+MP KN+VSW SM+SGY++ GE    + L  +   +  
Sbjct: 136 QNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGH 195

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARNGRMLEARR 254
             D  ++  ++     LDD   A +    + +     ++++   ++S Y +  +M +A  
Sbjct: 196 IPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAIN 255

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDG--YVRIAKLD 312
           +F ++ I+++++W +MIA + Q G   EA   F EM  ++       + G  +   +KL 
Sbjct: 256 VFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLL 315

Query: 313 EAR--RLLDQMPYK-----NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIK 365
           E    R +  +  K     ++ A  ++   Y +   ++ A  +F  I   D+V WN +I 
Sbjct: 316 EPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIA 375

Query: 366 GYAQCGRMDEAINLFRQM---------------------------------------VNK 386
           G+A      E+ + F QM                                        N 
Sbjct: 376 GFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNL 435

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446
           DI   N++++ Y++   ++DA+++FE++G + + VSWN L++  LQ     + L++  LM
Sbjct: 436 DIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLM 495

Query: 447 TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI 506
                K DH TL   L +   +A+ ++G QIH   +KSG   D+ V N+LI MY KCG +
Sbjct: 496 FASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSL 555

Query: 507 QNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
           + A  +F      D+ISW+SLI GYA  G   EA +LF  M   GV P+ +TF+G+L+AC
Sbjct: 556 ECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTAC 615

Query: 567 SHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGI 626
           SH+G+V+ GLKL+  M E Y I P  EH +CM+DLL+RAG LD A + +K M   P+  +
Sbjct: 616 SHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIKQMPFVPDVVV 675

Query: 627 WGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEG 686
           W TLL AC++H N+++G+ A E + +++P  ++   +L N+HA +G W +  ++R SM  
Sbjct: 676 WKTLLAACKVHGNLEVGKRAAENVLKIDPSNSAAVVMLCNIHASSGHWKDFARLRSSMRR 735

Query: 687 SGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
               K PG SWIE+K+++H FL+ D       +I   L+ L  QI
Sbjct: 736 MDVGKVPGQSWIEIKDKVHVFLAEDNLHPERGKIYTMLEELMLQI 780



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 131/568 (23%), Positives = 252/568 (44%), Gaps = 83/568 (14%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           Q + +  N ++S Y K G + +AR +F+ MP +N+VSW SMI+GY    +   A  L+ +
Sbjct: 130 QPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQ 189

Query: 103 MFR----PDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGN 155
           M R    PD F++  ++   +   + + AR+L   +   E   D    NA+++ Y K   
Sbjct: 190 MLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQ 249

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
             +A  +   +  K+++SW SM++G+++ G    A   F  M  + V   N  + G    
Sbjct: 250 MADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFG---- 305

Query: 216 DDLDSAWKFFQKIPE-----------------QNVVSWVTMLSGYARNGRMLEARRLFDQ 258
               SA+    K+ E                  ++ +  ++   YA+ G +  AR +F  
Sbjct: 306 ----SAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYH 361

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLD-- 312
           +   ++VAWNA+IA +      +E++  F +M       N V+  +++        L+  
Sbjct: 362 IEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHG 421

Query: 313 -EARRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTH-DVVCWNVMIKGYAQ 369
            +    + +M +  +I    +++S Y +   +++A Q+F+ IG   D+V WN ++    Q
Sbjct: 422 IQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQ 481

Query: 370 CGRMDEAINLFRQM---------------------------------------VNKDIVT 390
             +  E + L + M                                       +N DI  
Sbjct: 482 QNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISV 541

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
            N +I  Y +   ++ A K+F+ +G   + +SW++LI G+ Q     +A ++F  M   G
Sbjct: 542 SNALINMYTKCGSLECARKMFDSIGN-PDIISWSSLIVGYAQAGCGKEAFELFRTMRGLG 600

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS-LITMYAKCGRIQNA 509
            K +  T    L+AC+H+  ++ G +++    +   ++      S ++ + A+ G +  A
Sbjct: 601 VKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVA 660

Query: 510 ELLFKDADPV-DVISWNSLIAGYAINGN 536
           E   K    V DV+ W +L+A   ++GN
Sbjct: 661 EDFIKQMPFVPDVVVWKTLLAACKVHGN 688



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 111/497 (22%), Positives = 218/497 (43%), Gaps = 101/497 (20%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           QN  ++  GK G ++EA  +F  M  KN V++ SMIS Y++ G  ++A  L+ QM +   
Sbjct: 136 QNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGH 195

Query: 78  V----SWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARE 129
           +    ++ S++      D  K AR+L   +    F  DL +   +I+ YT+  ++  A  
Sbjct: 196 IPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAIN 255

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG--------- 180
           +F  +  K D   W +M+AG++++G   EA      M S+++   N  + G         
Sbjct: 256 VFSRIIIK-DLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKL 314

Query: 181 -------------------------------YTKNGEMHLASKFFEAMEERDVVSWNLML 209
                                          Y K G +  A   F  +E+ D+V+WN ++
Sbjct: 315 LEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAII 374

Query: 210 DGYVELDDLDSAWKFFQKIPEQNVV--------------------------SWV------ 237
            G+  + +   +  FF ++    +V                          S++      
Sbjct: 375 AGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFN 434

Query: 238 -------TMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARL--- 286
                  ++LS Y++   + +A ++F+ +  + ++V+WN ++ A +Q+ Q  E  RL   
Sbjct: 435 LDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKL 494

Query: 287 -FIEMPERNPVSWTTMIDGYVRIAKLDEARR----LLDQMPYKNIAAQTAMISGYVQNKR 341
            F    + + V+ T ++    +IA  +   +    ++      +I+   A+I+ Y +   
Sbjct: 495 MFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGS 554

Query: 342 MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAG 397
           ++ A ++FD IG  D++ W+ +I GYAQ G   EA  LFR M    V  + +T+  ++  
Sbjct: 555 LECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTA 614

Query: 398 YAQIRQMDDAVKIFEEM 414
            + I  +++ +K++  M
Sbjct: 615 CSHIGMVEEGLKLYRTM 631



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 3/148 (2%)

Query: 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHS-TLACALSACAHLAALQLGRQIHHLAIKSG 485
           I    +   H +ALK F +  +       S T    ++AC+ L +L+ GR+IH   +   
Sbjct: 69  IISLCKKNLHREALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCN 128

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
           Y  D+ + N +++MY KCG ++ A  +F      +V+SW S+I+GY+  G    AI L+ 
Sbjct: 129 YQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYV 188

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGLVD 573
           +M+  G  PD  TF  ++ +CS  GL D
Sbjct: 189 QMLRSGHIPDHFTFGSIVKSCS--GLDD 214


>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 224/762 (29%), Positives = 379/762 (49%), Gaps = 98/762 (12%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR-----NLVSWNSMIAGYLHNDKVKEAR 97
           Q +     S+I+ Y K G +  A ++F++M +      ++  WN +I GY      +E  
Sbjct: 87  QSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGL 146

Query: 98  ELFDKM--------------------FRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
             F +M                    F  D +    +I  Y+      +A  LF  L N+
Sbjct: 147 AQFCRMQELSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENR 206

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG-YTKNGEMHLASKFFEA 196
            +   WN M+ G+ + G + ++ +L     ++N    ++  +G +T      +    F  
Sbjct: 207 SNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLD--FGR 264

Query: 197 MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF 256
               DV+  N   D YV                        ++L+ YA++G + +A+++F
Sbjct: 265 QVHCDVIKMNFQDDPYV----------------------CTSLLTMYAKSGSVEDAKKVF 302

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE-RNPV---SWTTMIDGYVRIAKLD 312
           DQ+  + V   NAMI+A++  G+  +A  L+ +M     PV   + ++++ G   +   D
Sbjct: 303 DQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYD 362

Query: 313 EAR----RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
             R     ++ +    N+A Q+A+++ Y +    ++A+ +F  +   DVV W  MI G+ 
Sbjct: 363 FGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFC 422

Query: 369 QCGRMDEAINLFRQM------VNKDIVT-------------WNTMIAGYAQIRQMDDAV- 408
           Q  R  +A++LFR M       + D++T                +I G+A  R ++  V 
Sbjct: 423 QNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVF 482

Query: 409 -------------------KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
                               +F  M   +N V+WN++IS +  N     ++ +   + Q 
Sbjct: 483 VACSLVDMYSKFGFAESAEMVFSSM-PNKNLVAWNSMISCYSWNGLPEMSINLLPQILQH 541

Query: 450 GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA 509
           G   D  ++   L A + +AAL  G+ +H   I+    +DL V N+LI MY KCG ++ A
Sbjct: 542 GFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYA 601

Query: 510 ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
           +L+F++    ++++WNS+IAGY  +GN  EA++LF+EM     APD VTF+ ++++CSH 
Sbjct: 602 QLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHS 661

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629
           G+V+ GL LF+ M   Y +EP +EHYA ++DLL RAGRLD+A+  ++GM I  +  +W  
Sbjct: 662 GMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLC 721

Query: 630 LLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689
           LL ACR H+N++LG +  + L ++EP + S Y  L N++ E   WD    +R SM+G G 
Sbjct: 722 LLFACRAHRNMELGELVADNLLKMEPARGSNYVPLLNLYGEVEMWDRAANLRASMKGRGL 781

Query: 690 QKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           +K PGCSWIEVKN++  F SGD    R  EI  TL +L + +
Sbjct: 782 KKSPGCSWIEVKNRVDVFFSGDSSSTRRIEIYKTLSSLKSNM 823



 Score =  135 bits (340), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 187/406 (46%), Gaps = 44/406 (10%)

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERN----PVSWTTMIDGYVRIAKLDEARRL------ 317
           N+ I A VQ+G+  +A  L  + P         ++ +++     ++ L   R +      
Sbjct: 24  NSKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVT 83

Query: 318 --LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH-----DVVCWNVMIKGYAQC 370
             L   PY      T++I+ YV+   +  A Q+FDK+        D+  WN +I GY + 
Sbjct: 84  MGLQSDPY----IATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKY 139

Query: 371 GRMDEAINLF--------------------RQMVNKDIVTWNTMIAGYAQIRQMDDAVKI 410
           G  +E +  F                    R M   D      +I  Y+   +  +A  +
Sbjct: 140 GHFEEGLAQFCRMQELSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSL 199

Query: 411 FEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAA 470
           F ++  R N V+WN +I GF++N     +L+++ L   E  K   ++   A +AC+H   
Sbjct: 200 FGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEV 259

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
           L  GRQ+H   IK  + +D +V  SL+TMYAK G +++A+ +F      +V   N++I+ 
Sbjct: 260 LDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISA 319

Query: 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP 590
           +  NG A +A+ L+ +M       D  T   +LS CS VG  D G  +   + +  +++ 
Sbjct: 320 FIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIK-RSMQS 378

Query: 591 LVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL-GACR 635
            V   + ++ +  + G  ++A  +   MK + +   WG+++ G C+
Sbjct: 379 NVAIQSALLTMYYKCGSTEDADSVFYTMK-ERDVVAWGSMIAGFCQ 423



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 108/443 (24%), Positives = 205/443 (46%), Gaps = 42/443 (9%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ------- 74
           +T   KSG VE+A K+F Q+  K     N+MISA+  NGR  DA  L+ +M         
Sbjct: 286 LTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDS 345

Query: 75  ---RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
               +L+S  S++  Y     V    E+  +  + ++   + ++T Y + G  E A  +F
Sbjct: 346 FTISSLLSGCSVVGSYDFGRTVHA--EVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVF 403

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG------ 185
             +  + D   W +M+AG+ +   + +A  L  AM  + + + + +++     G      
Sbjct: 404 YTMKER-DVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENV 462

Query: 186 EM-HLASKF-FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGY 243
           E+ HL   F  +   E DV     ++D Y +    +SA   F  +P +N+V+W +M+S Y
Sbjct: 463 ELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCY 522

Query: 244 ARNG----------RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           + NG          ++L+     D + I  V+   + +AA + +G+   A ++ +++P  
Sbjct: 523 SWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALL-KGKTLHAYQIRLQIPSD 581

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI- 352
             V    +ID YV+   L  A+ + + MP +N+    +MI+GY  +   +EA ++F ++ 
Sbjct: 582 LQVE-NALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMK 640

Query: 353 ---GTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-----VNKDIVTWNTMIAGYAQIRQM 404
                 D V +  +I   +  G ++E +NLF+ M     V   +  + +++    +  ++
Sbjct: 641 RSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRL 700

Query: 405 DDAVKIFEEMGKRRNTVSWNALI 427
           DDA      M    +   W  L+
Sbjct: 701 DDAYSFIRGMPIDADRSVWLCLL 723



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 150/331 (45%), Gaps = 28/331 (8%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           Q+  +T   K G  E+A  +F  M +++ V + SMI+ + +N R  DA  LF  M +  +
Sbjct: 383 QSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGV 442

Query: 78  VSWNSMIAGYLHNDKVKEAREL--------FDKMFRPDLFSWALMITCYTRKGELEKARE 129
            + + ++   +      E  EL          +    D+F    ++  Y++ G  E A  
Sbjct: 443 KADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEM 502

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIG----NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
           +F  +PNK   A WN+M++ Y+  G    + N   ++L      + VS  ++L   +   
Sbjct: 503 VFSSMPNKNLVA-WNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVA 561

Query: 186 EMHLASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
            + L  K   A + R     D+   N ++D YV+   L  A   F+ +P +N+V+W +M+
Sbjct: 562 AL-LKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMI 620

Query: 241 SGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMP----- 291
           +GY  +G   EA RLF +M         V + A+I +    G +EE   LF  M      
Sbjct: 621 AGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGV 680

Query: 292 ERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
           E     + +++D   R  +LD+A   +  MP
Sbjct: 681 EPRMEHYASVVDLLGRAGRLDDAYSFIRGMP 711



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 7/143 (4%)

Query: 411 FEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAA 470
           F  + +   + S N+ I   +Q   +  AL++              T    L  CA L+ 
Sbjct: 11  FYSLRQTEVSPSINSKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSN 70

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF------KDADPVDVISW 524
           L  GR IH   +  G  +D ++  SLI MY KCG + +A  +F      +D+ P D+  W
Sbjct: 71  LYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAP-DITVW 129

Query: 525 NSLIAGYAINGNATEAIKLFEEM 547
           N +I GY   G+  E +  F  M
Sbjct: 130 NPVIDGYFKYGHFEEGLAQFCRM 152



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 9/135 (6%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           +N  I    K G ++ A  IF  M ++N VT+NSMI+ Y  +G   +A +LF++M +   
Sbjct: 585 ENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSET 644

Query: 78  ----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKAR 128
               V++ ++I    H+  V+E   LF  M       P +  +A ++    R G L+ A 
Sbjct: 645 APDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAY 704

Query: 129 ELFDLLPNKEDTACW 143
                +P   D + W
Sbjct: 705 SFIRGMPIDADRSVW 719


>gi|225432514|ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial [Vitis vinifera]
          Length = 694

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 225/664 (33%), Positives = 349/664 (52%), Gaps = 35/664 (5%)

Query: 59  NGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWAL----M 114
           NG  +     +E      L S +S++A       + + +++   +F+  L S       +
Sbjct: 41  NGNKDTQHSDYELTLVSALKSCSSLLA-------LSQGQQIHSLVFKSGLLSNIFVKNSL 93

Query: 115 ITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSW 174
           I+ Y +   +  AR LFD     +  +C N M+AGY K G+ + A+ L + MP K  VS+
Sbjct: 94  ISFYVKCRLISNARSLFDTCSVLDPVSC-NIMLAGYVKSGSLDNARHLFEKMPIKGCVSY 152

Query: 175 NSMLSGYTKNG----------EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKF 224
            +M+ G  +N           +M  A      +    V+S    + G +    L  A  F
Sbjct: 153 TTMVMGLAQNNCWLEAIGVFKDMRFAGVIPNEVTLASVISAYSHVGGILNCRMLH-ALSF 211

Query: 225 FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA 284
              +   N+V+   ++  Y     +  AR LFD++P RNVV WN M+  Y + G ++ A 
Sbjct: 212 KLGLEALNIVA-TNLVHMYCVCSSLGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLAR 270

Query: 285 RLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMI----SGYVQNK 340
            LF  +P ++ VSW T+IDGYV+I +L EA R+   M    +     MI    S   +  
Sbjct: 271 DLFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTM 330

Query: 341 RMDEANQIFDKIGTHDVVCWN----VMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIA 396
            + E  Q    I      C++     +I  YA CG ++ A   F       + +WN +I+
Sbjct: 331 AVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAFLQFELGSKDHVSSWNALIS 390

Query: 397 GYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHS 456
           G+ +   ++ A ++F+EM   R+  SW+++ISG+ QNE    AL++F  M   G + +  
Sbjct: 391 GFVRNGMIEQARQLFDEM-PERDVFSWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNEI 449

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA-ELLFKD 515
           T+    SA A L  L  GR  H   + +    +  +  +LI MYAKCG I  A +L ++ 
Sbjct: 450 TMVSVFSAIATLGTLMEGRWAHEYILSNSIPLNDNLNAALIDMYAKCGSITIALQLFYEI 509

Query: 516 ADPVDVIS-WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574
            D V  +S WN++I G A++G+A  ++KLF ++    + P+ +TFIGVLSAC H GLVD 
Sbjct: 510 QDRVSSVSPWNAIICGLAMHGHANVSLKLFSQLQRVRIKPNSITFIGVLSACCHAGLVDT 569

Query: 575 GLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGAC 634
           G K F+ M  +Y IEP ++HY CMIDLL RAGRL EA EM++ M +K +  IWGTLL AC
Sbjct: 570 GEKYFKGMKNLYNIEPNIKHYGCMIDLLGRAGRLKEAAEMIRKMPMKADVVIWGTLLAAC 629

Query: 635 RMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPG 694
           R H N+++G  A E L++L+    +   LLSN++A+AGRWD+   VR +M+    +K PG
Sbjct: 630 RTHGNVEIGERAAENLAKLDISHGAGRVLLSNIYADAGRWDDAFLVRRAMQSQRMKKSPG 689

Query: 695 CSWI 698
           CS +
Sbjct: 690 CSGV 693



 Score =  191 bits (486), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 158/575 (27%), Positives = 269/575 (46%), Gaps = 76/575 (13%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F +N  I+   K   +  A  +F   S  + V+ N M++ Y K+G +++AR LFE+M
Sbjct: 85  SNIFVKNSLISFYVKCRLISNARSLFDTCSVLDPVSCNIMLAGYVKSGSLDNARHLFEKM 144

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKAR 128
           P +  VS+ +M+ G   N+   EA  +F  M      P+  + A +I+ Y+  G +   R
Sbjct: 145 PIKGCVSYTTMVMGLAQNNCWLEAIGVFKDMRFAGVIPNEVTLASVISAYSHVGGILNCR 204

Query: 129 EL----FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
            L    F L     +    N +V  Y    +   A+ L D +P +N+V+WN ML+GY+K+
Sbjct: 205 MLHALSFKLGLEALNIVATN-LVHMYCVCSSLGNARVLFDEIPERNVVTWNVMLNGYSKS 263

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTML 240
           G + LA   FE +  +DVVSW  ++DGYV+++ L  A + ++ +    V    V  V ++
Sbjct: 264 GLVDLARDLFERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLI 323

Query: 241 SGYARNGRMLEARRL-------------FDQMPI----------------------RNVV 265
           S   R   + E ++              F Q  I                       +V 
Sbjct: 324 SACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAFLQFELGSKDHVS 383

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           +WNA+I+ +V+ G IE+A +LF EMPER+  SW++MI GY +  + D A +L  +     
Sbjct: 384 SWNALISGFVRNGMIEQARQLFDEMPERDVFSWSSMISGYSQNEQPDLALQLFHE----- 438

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
                 M++G VQ   +   + +F  I T           G    GR      L   +  
Sbjct: 439 ------MVAGGVQPNEITMVS-VFSAIAT----------LGTLMEGRWAHEYILSNSIPL 481

Query: 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS-WNALISGFLQNEFHLDALKIFV 444
            D +    +I  YA+   +  A+++F E+  R ++VS WNA+I G   +     +LK+F 
Sbjct: 482 NDNLN-AALIDMYAKCGSITIALQLFYEIQDRVSSVSPWNAIICGLAMHGHANVSLKLFS 540

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN--SLITMYAK 502
            + +   K +  T    LSAC H   +  G + +   +K+ Y  +  + +   +I +  +
Sbjct: 541 QLQRVRIKPNSITFIGVLSACCHAGLVDTGEK-YFKGMKNLYNIEPNIKHYGCMIDLLGR 599

Query: 503 CGRIQN-AELLFKDADPVDVISWNSLIAGYAINGN 536
            GR++  AE++ K     DV+ W +L+A    +GN
Sbjct: 600 AGRLKEAAEMIRKMPMKADVVIWGTLLAACRTHGN 634



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 144/293 (49%), Gaps = 23/293 (7%)

Query: 14  YVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP 73
           Y F Q   I      G +  A   F   S+ +  ++N++IS + +NG +  AR+LF++MP
Sbjct: 350 YDFIQATIIHFYAACGEINLAFLQFELGSKDHVSSWNALISGFVRNGMIEQARQLFDEMP 409

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKAR- 128
           +R++ SW+SMI+GY  N++   A +LF +M     +P+  +   + +     G L + R 
Sbjct: 410 ERDVFSWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNEITMVSVFSAIATLGTLMEGRW 469

Query: 129 ----ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK--NIVSWNSMLSGYT 182
                L + +P  ++     A++  YAK G+   A +L   +  +  ++  WN+++ G  
Sbjct: 470 AHEYILSNSIPLNDNLNA--ALIDMYAKCGSITIALQLFYEIQDRVSSVSPWNAIICGLA 527

Query: 183 KNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIP-----EQNV 233
            +G  +++ K F  ++   +    +++  +L        +D+  K+F+ +      E N+
Sbjct: 528 MHGHANVSLKLFSQLQRVRIKPNSITFIGVLSACCHAGLVDTGEKYFKGMKNLYNIEPNI 587

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAAR 285
             +  M+    R GR+ EA  +  +MP++ +VV W  ++AA    G +E   R
Sbjct: 588 KHYGCMIDLLGRAGRLKEAAEMIRKMPMKADVVIWGTLLAACRTHGNVEIGER 640


>gi|218188593|gb|EEC71020.1| hypothetical protein OsI_02714 [Oryza sativa Indica Group]
          Length = 825

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 221/745 (29%), Positives = 378/745 (50%), Gaps = 78/745 (10%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKE 95
           ++     + +   ++S+++ Y K GR+ DAR +F+ MP R++V+W +M++          
Sbjct: 85  RLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVFDGMPHRDVVAWTAMVSAITAAGDAGA 144

Query: 96  ARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVA 148
           A  LF +M      P+ F+ A  +   T   +L    ++       E   D    +++V 
Sbjct: 145 ALRLFAEMSEEGVVPNGFALAAALKACTVGSDLGFTPQVHAQAVKLEGLFDPYVSSSLVE 204

Query: 149 GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE----MHLASKFFEA-------- 196
            Y   G  + A++ L   P ++ VSWN++L+ Y ++G+    M +  K  E+        
Sbjct: 205 AYVSCGEVDVAERALLDSPVRSDVSWNALLNEYARDGDYAKVMLVFDKLVESGDEISKYT 264

Query: 197 --------ME-------------------ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP 229
                   ME                   E D V  N +++ Y +    + A++ F +I 
Sbjct: 265 LPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLNNCLIEMYSKCLSAEDAYEVFARID 324

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQM------PIRNVVAWNAMIAAYVQRGQIEEA 283
           E +VV    M+S + R+    EA  +F QM      P +      A++A+  + G +   
Sbjct: 325 EPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQYTFVGLAIVAS--RTGDVNLC 382

Query: 284 ARLFIEMPE----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQN 339
             +   + +    R       ++  YV+   + +A    D M   +IA+   ++SG+   
Sbjct: 383 RSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDAILAFDLMQGPDIASWNTLLSGFYSG 442

Query: 340 KRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL-------------FRQMVNK 386
              +   +IF ++     +C  V+   Y   G +    +L              +     
Sbjct: 443 NNCEHGLRIFKEL-----ICEGVLANKYTYVGILRCCTSLMDLRFGCQVHACVLKSGFQG 497

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446
           D      ++  Y Q     +A  +F+ + K R+  SW  ++S + + +    A++ F  M
Sbjct: 498 DYDVSKMLLDMYVQAGCFTNARLVFDRL-KERDVFSWTVVMSTYAKTDEGEKAIECFRSM 556

Query: 447 TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI 506
            +E K+ + +TLA +LS C+ LA L  G Q+H   IKSG+ N   V ++L+ MY KCG +
Sbjct: 557 LRENKRPNDATLATSLSVCSDLACLGSGLQLHSYTIKSGW-NSSVVSSALVDMYVKCGNL 615

Query: 507 QNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
            +AE+LF ++D  D++ WN++I GYA +G+  +A++ F+EM+ EG  PD +TF+GVLSAC
Sbjct: 616 ADAEMLFDESDTHDLVEWNTIICGYAQHGHGYKALEAFQEMIDEGNVPDEITFVGVLSAC 675

Query: 567 SHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGI 626
           SH GL+D G + F+ ++ VY I P +EHYACM+D+L++AG+L EA  ++  M + P+A +
Sbjct: 676 SHAGLLDEGRRYFKLLSSVYGITPTLEHYACMVDILAKAGKLAEAESLINEMPLTPDASL 735

Query: 627 WGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEG 686
           W T+LGACRMH NI++   A EKL E +P   S   LLSN++A+  RW++V K+R  +  
Sbjct: 736 WKTILGACRMHGNIEIAERAAEKLFESQPDDISSCILLSNIYADLKRWNDVAKLRSMLVD 795

Query: 687 SGAQKQPGCSWIEVKNQIHTFLSGD 711
            G +K+PGCSWIE+  ++H FLS D
Sbjct: 796 RGVKKEPGCSWIEINGKLHVFLSQD 820



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 137/298 (45%), Gaps = 9/298 (3%)

Query: 284 ARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMD 343
           ARL    P  +     ++++ Y +  +L +AR + D MP++++ A TAM+S         
Sbjct: 84  ARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVFDGMPHRDVVAWTAMVSAITAAGDAG 143

Query: 344 EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK--------DIVTWNTMI 395
            A ++F ++    VV     +    +   +   +    Q+  +        D    ++++
Sbjct: 144 AALRLFAEMSEEGVVPNGFALAAALKACTVGSDLGFTPQVHAQAVKLEGLFDPYVSSSLV 203

Query: 396 AGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADH 455
             Y    ++D A +   +    R+ VSWNAL++ + ++  +   + +F  + + G +   
Sbjct: 204 EAYVSCGEVDVAERALLD-SPVRSDVSWNALLNEYARDGDYAKVMLVFDKLVESGDEISK 262

Query: 456 STLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD 515
            TL   L  C  L   + G+ +H L IK G   D  + N LI MY+KC   ++A  +F  
Sbjct: 263 YTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLNNCLIEMYSKCLSAEDAYEVFAR 322

Query: 516 ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVD 573
            D  DV+  + +I+ +  +  A EA  +F +M   GV P+  TF+G+    S  G V+
Sbjct: 323 IDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQYTFVGLAIVASRTGDVN 380



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 79/157 (50%), Gaps = 8/157 (5%)

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
           + A AL  CA   AL+ G+ +H   ++SG   D F+ +SL+ MY KCGR+ +A  +F   
Sbjct: 62  SYAAALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVFDGM 121

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC---SHVGL-- 571
              DV++W ++++     G+A  A++LF EM  EGV P+       L AC   S +G   
Sbjct: 122 PHRDVVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKACTVGSDLGFTP 181

Query: 572 -VDGGLKLFECMTEVYAIEPLVEHYACM--IDLLSRA 605
            V       E + + Y    LVE Y     +D+  RA
Sbjct: 182 QVHAQAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERA 218


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 215/649 (33%), Positives = 333/649 (51%), Gaps = 85/649 (13%)

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
           LP+   T   N ++  YA  G    A+++ DAMP +N+V+ NS+LS   + G +    + 
Sbjct: 40  LPHPSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRDMERL 99

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI--------PEQNVVSWVTMLSG--- 242
           F ++ +RD VS+N +L G+        A   +  +        P +  +S V M++    
Sbjct: 100 FTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASALG 159

Query: 243 ------------------------------YARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
                                         YA+ G + +ARR+FD+M  +NVV  N MI 
Sbjct: 160 DRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMIT 219

Query: 273 AYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIA----KLDEARRL------LDQMP 322
             ++   + EA  LF  + ER+ ++WTTM+ G  +       LD  RR+      +DQ  
Sbjct: 220 GLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYT 279

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
           + +I      ++   + K++     I       +V   + ++  Y++C  +  A  +FR+
Sbjct: 280 FGSILTACGALAALEEGKQIHA--YITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRR 337

Query: 383 MVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI 442
           M+ K+I++W  MI GY Q    ++AV++F E                             
Sbjct: 338 MMWKNIISWTAMIVGYGQNGCGEEAVRVFSE----------------------------- 368

Query: 443 FVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
              M ++G K D  TL   +S+CA+LA+L+ G Q H LA+ SG    + V N+L+T+Y K
Sbjct: 369 ---MQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGK 425

Query: 503 CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
           CG I++A  LF +    D +SW +L+ GYA  G A E I LFE+M+ +GV PD VTFIGV
Sbjct: 426 CGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGV 485

Query: 563 LSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKP 622
           LSACS  GLVD G   F  M + + I PL +HY CMIDL SR+G L +A E +K M   P
Sbjct: 486 LSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCP 545

Query: 623 NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRV 682
           +A  W TLL ACR+  ++++G+ A E L +L+PQ  + Y LL +MHA  G W++V K+R 
Sbjct: 546 DAFGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRR 605

Query: 683 SMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
            M     +K+PGCSWI+ KN++H F + D     +  I   L+ L +++
Sbjct: 606 GMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSRTIYEKLQWLNSKM 654



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/465 (25%), Positives = 216/465 (46%), Gaps = 64/465 (13%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +T    SG +  A ++F  M  +N VT NS++SA A+ G V D  +LF  +PQR+ V
Sbjct: 50  NTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRDMERLFTSLPQRDAV 109

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMF------RPDLFSWALMITCYTRKGELEKARELFD 132
           S+N+++AG+        A   +  +       RP   + + ++   +  G+    R++  
Sbjct: 110 SYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASALGDRALGRQVHC 169

Query: 133 LLPNKEDTA---CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
            +      A     + +V  YAK+G   +A+++ D M  KN+V  N+M++G  +   +  
Sbjct: 170 QILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAE 229

Query: 190 ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-------------------- 229
           A   FEA+EERD ++W  M+ G  +      A   F+++                     
Sbjct: 230 ARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGA 289

Query: 230 -------------------EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAM 270
                              E NV     ++  Y++   +  A  +F +M  +N+++W AM
Sbjct: 290 LAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAM 349

Query: 271 IAAYVQRGQIEEAARLFIEMPERN--PVSWT--TMIDGYVRIAKLDEARR-----LLDQM 321
           I  Y Q G  EEA R+F EM      P  +T  ++I     +A L+E  +     L+  +
Sbjct: 350 IVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGL 409

Query: 322 -PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF 380
            PY  +    A+++ Y +   +++A+++FD++  HD V W  ++ GYAQ G+  E I+LF
Sbjct: 410 RPY--VTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLF 467

Query: 381 RQMVNK----DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
            +M++K    D VT+  +++  ++   +D     F  M +  + V
Sbjct: 468 EKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIV 512



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 121/519 (23%), Positives = 224/519 (43%), Gaps = 69/519 (13%)

Query: 81  NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
           N+++  Y  +  +  AR +FD M   +L +   +++   R G +     LF  LP + D 
Sbjct: 50  NTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRDMERLFTSLPQR-DA 108

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAM--------PSKNIVSWNSMLSG------------ 180
             +NA++AG+++ G +  A     A+        PS+  +S   M++             
Sbjct: 109 VSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASALGDRALGRQVH 168

Query: 181 ---------------------YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLD 219
                                Y K G +  A + F+ ME ++VV  N M+ G +    + 
Sbjct: 169 CQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVA 228

Query: 220 SAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYV 275
            A   F+ I E++ ++W TM++G  +NG   EA  +F +M    V      + +++ A  
Sbjct: 229 EARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACG 288

Query: 276 QRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
               +EE  ++   +     E N    + ++D Y +   +  A  +  +M +KNI + TA
Sbjct: 289 ALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTA 348

Query: 332 MISGYVQNKRMDEANQIF-----DKIGTHDVVCWNVMIKGYAQCGRMDEAINL----FRQ 382
           MI GY QN   +EA ++F     D I   D    +V I   A    ++E           
Sbjct: 349 MIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSV-ISSCANLASLEEGAQFHCLALVS 407

Query: 383 MVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI 442
            +   +   N ++  Y +   ++DA ++F+EM    + VSW AL+ G+ Q     + + +
Sbjct: 408 GLRPYVTVSNALVTLYGKCGSIEDAHRLFDEM-SFHDQVSWTALVMGYAQFGKAKETIDL 466

Query: 443 FVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY----VNDLFVGNSLIT 498
           F  M  +G K D  T    LSAC+    +  GR   H +++  +    ++D +    +I 
Sbjct: 467 FEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFH-SMQQDHDIVPLDDHY--TCMID 523

Query: 499 MYAKCGRIQNAELLFKDADPV-DVISWNSLIAGYAINGN 536
           +Y++ G ++ AE   K      D   W +L++   + G+
Sbjct: 524 LYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGD 562



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 181/406 (44%), Gaps = 48/406 (11%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G+Y F  +  +    K G + +A ++F +M  KN V  N+MI+   +   V +AR LFE 
Sbjct: 177 GAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEA 236

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKA 127
           + +R+ ++W +M+ G   N    EA ++F +M       D +++  ++T       LE+ 
Sbjct: 237 IEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEG 296

Query: 128 RELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
           +++   +     +++    +A+V  Y+K  +   A+ +   M  KNI+SW +M+ GY +N
Sbjct: 297 KQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQN 356

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVE----LDDLDSAWKFFQKIPEQNVVSWVT-- 238
           G    A + F  M+   +   +  L   +     L  L+   +F        +  +VT  
Sbjct: 357 GCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVS 416

Query: 239 --MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
             +++ Y + G + +A RLFD+M   + V+W A++  Y Q G+ +E   LF +M     +
Sbjct: 417 NALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKM-----L 471

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT-H 355
           S     DG   I  L    R                 SG V     D+    F  +   H
Sbjct: 472 SKGVKPDGVTFIGVLSACSR-----------------SGLV-----DKGRSYFHSMQQDH 509

Query: 356 DVVC----WNVMIKGYAQCGRMDEAINLFRQMVN-KDIVTWNTMIA 396
           D+V     +  MI  Y++ G + +A    +QM    D   W T+++
Sbjct: 510 DIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLS 555


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 217/672 (32%), Positives = 347/672 (51%), Gaps = 77/672 (11%)

Query: 114 MITCYTRKGELEKARELFDLLPNK-EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV 172
           ++  Y    EL+ AR +FD +P++ ++   WN ++  YA  G Y EA  L   M    I 
Sbjct: 57  LVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGIT 116

Query: 173 SWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQN 232
                 + +T    +   S   EA E R++         + ++  L           E N
Sbjct: 117 P-----NRFTFPFVLKACSALKEASEGREI---------HCDIKRLR---------LESN 153

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAY-VQRGQIEEAARLFIEMP 291
           V     ++  YA+ G + +A+ +FD+M  R+VVAWN+MI+ + +  G  +E ARL ++M 
Sbjct: 154 VYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQ 213

Query: 292 ERNPVSWTTMIDGYVRIAKLDEARR-------LLDQMPYKNIAAQTAMISGYVQNKRMDE 344
                + +T++     +A+++  R         + +    ++   T ++  Y + + +D 
Sbjct: 214 NDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDY 273

Query: 345 ANQIFDKIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQ--MVNKDIVTW---------- 391
           A +IFD +G   + V W+ M+  Y  C  M EA+ LF Q  M+  D++            
Sbjct: 274 ARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIR 333

Query: 392 ------------------------------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
                                         NT+++ YA+   ++ A++ F EM   R+ V
Sbjct: 334 VCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEM-DLRDAV 392

Query: 422 SWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLA 481
           S+ A+ISG++QN    + L++F+ M   G   + +TLA  L ACAHLA L  G   H  A
Sbjct: 393 SFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYA 452

Query: 482 IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
           I  G+  D  + N+LI MYAKCG+I  A  +F       ++SWN++I  Y I+G   EA+
Sbjct: 453 IICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEAL 512

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601
            LF+ M  EG+ PD VTFI ++SACSH GLV  G   F  MT+ + I P +EHYACM+DL
Sbjct: 513 LLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDL 572

Query: 602 LSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCY 661
           LSRAG   E    ++ M ++P+  +WG LL ACR+++N++LG    +K+ +L P+ T  +
Sbjct: 573 LSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNF 632

Query: 662 ALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPK-QCRTAEI 720
            LLSNM++  GRWD+  +VR + +  G +K PGCSWIE+   +HTFL G  +   +  +I
Sbjct: 633 VLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGGGYRSHPQLTQI 692

Query: 721 CNTLKTLAAQIR 732
            N L  L  +++
Sbjct: 693 SNKLDELLVEMK 704



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 120/454 (26%), Positives = 199/454 (43%), Gaps = 78/454 (17%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGY-LHNDKVKEARELFD 101
           + N     +++  YAK G ++DA+++F++M +R++V+WNSMI+G+ LH     E   L  
Sbjct: 151 ESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLV 210

Query: 102 KM---FRPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGN 155
           +M     P+  +   ++    +   L   +E+      +    D      ++  Y K   
Sbjct: 211 QMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQC 270

Query: 156 YNEAKKLLDAMP-SKNIVSWNSMLSGYTKNGEMHLASKFF--EAMEERDVVSWNLMLDGY 212
            + A+++ D M   KN V+W++M+  Y     M  A + F    M + DV+  + +    
Sbjct: 271 IDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLAT 330

Query: 213 V-----ELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRN 263
           V      L DL +         +   V  +    T+LS YA+ G +  A R F++M +R+
Sbjct: 331 VIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRD 390

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEMPER--NPVSWTTMIDGYVRIAKLDEARRLLDQM 321
            V++ A+I+ YVQ G  EE  R+F+EM     NP   T        +A +  A   L  +
Sbjct: 391 AVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKAT--------LASVLPACAHLAGL 442

Query: 322 PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
            Y + +   A+I G+                 T D +  N +I  YA+CG++D A  +F 
Sbjct: 443 HYGSCSHCYAIICGF-----------------TADTMICNALIDMYAKCGKIDTARKVFD 485

Query: 382 QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALK 441
           +M  + IV+WNTMI  Y                            I G       L+AL 
Sbjct: 486 RMHKRGIVSWNTMIIAYG---------------------------IHG-----IGLEALL 513

Query: 442 IFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
           +F  M  EG K D  T  C +SAC+H   +  G+
Sbjct: 514 LFDNMQSEGLKPDDVTFICLISACSHSGLVAEGK 547



 Score =  116 bits (290), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 100/450 (22%), Positives = 197/450 (43%), Gaps = 67/450 (14%)

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQMPY--KNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
           V +  ++D Y+  ++L  AR + D+MP+  KN+     +I  Y  N   +EA  ++ K+ 
Sbjct: 52  VPFEKLVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKML 111

Query: 354 THDVV----CWNVMIKGYAQCGRMDEA-------INLFRQMVNKDIVTWNTMIAGYAQIR 402
            + +      +  ++K    C  + EA        ++ R  +  ++     ++  YA+  
Sbjct: 112 GYGITPNRFTFPFVLKA---CSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCG 168

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
            +DDA ++F++M K R+ V+WN++ISGF  +E   D +   ++  Q     + ST+   L
Sbjct: 169 CLDDAKEVFDKMHK-RDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVL 227

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV-DV 521
            A A + +L+ G++IH   ++ G+V D+ VG  ++ +Y KC  I  A  +F     V + 
Sbjct: 228 PAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNE 287

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVM---EGVAPDPVTFIGVLSACSHV--------- 569
           ++W++++  Y +     EA++LF +++M   + +    VT   V+  C+++         
Sbjct: 288 VTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCL 347

Query: 570 --------------------------GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLS 603
                                     G+++G ++ F  M    A+      +  +I    
Sbjct: 348 HCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVS-----FTAIISGYV 402

Query: 604 RAGRLDEAFEMVKGMK---IKPNAGIWGTLLGACRMHQNIKLGRIA--VEKLSELEPQKT 658
           + G  +E   M   M+   I P      ++L AC     +  G  +     +        
Sbjct: 403 QNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTM 462

Query: 659 SCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688
            C AL+ +M+A+ G+ D   KV   M   G
Sbjct: 463 ICNALI-DMYAKCGKIDTARKVFDRMHKRG 491



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 95/457 (20%), Positives = 192/457 (42%), Gaps = 44/457 (9%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYA-KNGRVNDARKLFEQ 71
           S V+     +    K G +++A ++F +M +++ V +NSMIS ++   G  ++  +L  Q
Sbjct: 152 SNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQ 211

Query: 72  MPQRNLVSWNSMIAGYL----HNDKVKEARELFD----KMFRPDLFSWALMITCYTRKGE 123
           M Q ++   +S I G L      + ++  +E+      + F  D+     ++  Y +   
Sbjct: 212 M-QNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQC 270

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKL-------------LDAMPSKN 170
           ++ AR +FD++   ++   W+AMV  Y       EA +L             L A+    
Sbjct: 271 IDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLAT 330

Query: 171 IVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPE 230
           ++   + L+  +    +H  +   ++    D++  N +L  Y +   ++ A +FF ++  
Sbjct: 331 VIRVCANLTDLSTGTCLHCYA--IKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDL 388

Query: 231 QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIA---------AYVQRGQIE 281
           ++ VS+  ++SGY +NG   E  R+F +M +  +    A +A         A +  G   
Sbjct: 389 RDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCS 448

Query: 282 EAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKR 341
               +         +    +ID Y +  K+D AR++ D+M  + I +   MI  Y  +  
Sbjct: 449 HCYAIICGFTADTMIC-NALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGI 507

Query: 342 MDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT-----WN 392
             EA  +FD + +     D V +  +I   +  G + E    F  M     +      + 
Sbjct: 508 GLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYA 567

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
            M+   ++     +     E+M    +   W AL+S 
Sbjct: 568 CMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSA 604


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 236/766 (30%), Positives = 387/766 (50%), Gaps = 80/766 (10%)

Query: 45  NTVTYNSMISAYAKN-GRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
           + V  N +IS Y K  G V  A   F  +  +N VSWNS+I+ Y      + A  +F  M
Sbjct: 138 DAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSM 197

Query: 104 ----FRPDLFSWALMIT--CYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIG 154
                RP  +++  ++T  C   + ++    ++   +       D    + +V+ +AK G
Sbjct: 198 QYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSG 257

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF---EAMEERDVVSWNLMLDG 211
           + + A+K+ + M ++N V+ N ++ G  +      A+K F    +M +    S+ ++L  
Sbjct: 258 SLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSS 317

Query: 212 YVELD-----DLDSAWKFFQKIPEQNVVSWVT-----MLSGYARNGRMLEARRLFDQMPI 261
           + E        L    +    +    +V ++      +++ YA+ G + +ARR+F  M  
Sbjct: 318 FPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTD 377

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWTTMIDGYVRIAKLDEARRLLD 319
           ++ V+WN+MI    Q G   EA   +  M   +  P S+T +I      A L  A+  L 
Sbjct: 378 KDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFT-LISSLSSCASLKWAK--LG 434

Query: 320 QMPYK---------NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC 370
           Q  +          N++   A+++ Y +   ++E  +IF  +  HD V WN +I   A+ 
Sbjct: 435 QQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARS 494

Query: 371 GR-MDEAINLF------RQMVNK---------------------------------DIVT 390
            R + EA+  F       Q +N+                                 +  T
Sbjct: 495 ERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATT 554

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
            N +IA Y +  +MD   KIF  M +RR+ V+WN++ISG++ NE    AL +   M Q G
Sbjct: 555 ENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTG 614

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
           ++ D    A  LSA A +A L+ G ++H  ++++   +D+ VG++L+ MY+KCGR+  A 
Sbjct: 615 QRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYAL 674

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG-VAPDPVTFIGVLSACSHV 569
             F      +  SWNS+I+GYA +G   EA+KLFE M ++G   PD VTF+GVLSACSH 
Sbjct: 675 RFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHA 734

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629
           GL++ G K FE M++ Y + P +EH++CM D+L RAG LD+  + ++ M +KPN  IW T
Sbjct: 735 GLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRT 794

Query: 630 LLGACRMHQNIK--LGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGS 687
           +LGAC      K  LG+ A E L +LEP+    Y LL NM+A  GRW+++ K R  M+ +
Sbjct: 795 VLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDA 854

Query: 688 GAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
             +K+ G SW+ +K+ +H F++GD        I   LK L  ++R+
Sbjct: 855 DVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRD 900



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 170/680 (25%), Positives = 311/680 (45%), Gaps = 85/680 (12%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKE 95
           +++     K+    N++I+AY + G    ARK+F++MP RN VSW  +++GY  N + KE
Sbjct: 26  RLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKE 85

Query: 96  ARELFDKMFRPDLFSWALMITCYTRKGE------LEKARELFDL---LPNKEDTACWNAM 146
           A      M +  +FS         R  +      +   R++  L   L    D    N +
Sbjct: 86  ALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVL 145

Query: 147 VAGYAK-IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERD 201
           ++ Y K IG+   A      +  KN VSWNS++S Y++ G+   A + F +M+       
Sbjct: 146 ISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPT 205

Query: 202 VVSWNLMLDGYVELDDLDSAW--KFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRL 255
             ++  ++     L + D     +    I +  +++ +     ++S +A++G +  AR++
Sbjct: 206 EYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKV 265

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP---ERNPVSWTTMIDGYVRIAKLD 312
           F+QM  RN V  N ++   V++   EEA +LF++M    + +P S+  ++  +   +  +
Sbjct: 266 FNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAE 325

Query: 313 E--------------ARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV 358
           E                 L+D M    +     +++ Y +   + +A ++F  +   D V
Sbjct: 326 EVGLKKGREVHGHVITTGLVDFM----VGIGNGLVNMYAKCGSIADARRVFYFMTDKDSV 381

Query: 359 CWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT----------------W----------- 391
            WN MI G  Q G   EA+  ++ M   DI+                 W           
Sbjct: 382 SWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGES 441

Query: 392 ------------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHL-D 438
                       N ++  YA+   +++  KIF  M    + VSWN++I    ++E  L +
Sbjct: 442 LKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSM-PEHDQVSWNSIIGALARSERSLPE 500

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
           A+  F+   + G+K +  T +  LSA + L+  +LG+QIH LA+K+   ++    N+LI 
Sbjct: 501 AVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTENALIA 560

Query: 499 MYAKCGRIQNAELLF-KDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
            Y KCG +   E +F + A+  D ++WNS+I+GY  N    +A+ L   M+  G   D  
Sbjct: 561 CYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSF 620

Query: 558 TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKG 617
            +  VLSA + V  ++ G+++  C      +E  V   + ++D+ S+ GRLD A      
Sbjct: 621 MYATVLSAFASVATLERGMEVHACSVRA-CLESDVVVGSALVDMYSKCGRLDYALRFFNT 679

Query: 618 MKIKPNAGIWGTLLGACRMH 637
           M ++ N+  W +++     H
Sbjct: 680 MPVR-NSYSWNSMISGYARH 698



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 136/622 (21%), Positives = 255/622 (40%), Gaps = 111/622 (17%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM-- 72
           +F  +  ++   KSG +  A K+F+QM  +N VT N ++    +     +A KLF  M  
Sbjct: 243 LFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNS 302

Query: 73  -----PQRNLVSWNSMIAGYLHND-KVKEARELFDKMFRPDLFSWAL-----MITCYTRK 121
                P+  ++  +S     L  +  +K+ RE+   +    L  + +     ++  Y + 
Sbjct: 303 MIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKC 362

Query: 122 GELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN-SMLSG 180
           G +  AR +F  + +K D+  WN+M+ G  + G + EA +   +M   +I+  + +++S 
Sbjct: 363 GSIADARRVFYFMTDK-DSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISS 421

Query: 181 YTKNGEMHLASKFFEAMEER-------DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV 233
            +    +  A    +   E        +V   N ++  Y E   L+   K F  +PE + 
Sbjct: 422 LSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQ 481

Query: 234 VSWVTMLSGYARNGRML-----------------------------------EARRLFDQ 258
           VSW +++   AR+ R L                                   E  +    
Sbjct: 482 VSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHG 541

Query: 259 MPIRNVVA-----WNAMIAAYVQRGQIEEAARLFIEMPE-RNPVSWTTMIDGYVRIAKLD 312
           + ++N +A      NA+IA Y + G+++   ++F  M E R+ V+W +MI GY+    L 
Sbjct: 542 LALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLA 601

Query: 313 EARRL----------LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNV 362
           +A  L          LD   Y  + +  A ++     + M+            DVV  + 
Sbjct: 602 KALDLVWFMLQTGQRLDSFMYATVLSAFASVA--TLERGMEVHACSVRACLESDVVVGSA 659

Query: 363 MIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
           ++  Y++CGR+D A+  F  M  ++  +WN+MI+GYA+  Q ++A+K+FE M     T  
Sbjct: 660 LVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQT-- 717

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG-RQIHHLA 481
                                          DH T    LSAC+H   L+ G +    ++
Sbjct: 718 -----------------------------PPDHVTFVGVLSACSHAGLLEEGFKHFESMS 748

Query: 482 IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYA-INGNAT 538
              G    +   + +  +  + G +   E  F +  P+  +V+ W +++      NG   
Sbjct: 749 DSYGLAPRIEHFSCMADVLGRAGELDKLE-DFIEKMPMKPNVLIWRTVLGACCRANGRKA 807

Query: 539 EAIKLFEEMVMEGVAPDPVTFI 560
           E  K   EM+ +    + V ++
Sbjct: 808 ELGKKAAEMLFQLEPENAVNYV 829



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 115/471 (24%), Positives = 215/471 (45%), Gaps = 33/471 (7%)

Query: 191 SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRML 250
           S+ ++   ++DV   N +++ Y+E  D  SA K F ++P +N VSW  ++SGY+RNG   
Sbjct: 25  SRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHK 84

Query: 251 EA----RRLFDQMPIRNVVAWNAMIAAYVQRGQI------EEAARLFIEMPERNPVSWTT 300
           EA    R +  +    N  A+ +++ A  + G +      +    +F      + V    
Sbjct: 85  EALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNV 144

Query: 301 MIDGYVR-IAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI---GTHD 356
           +I  Y + I  +  A      +  KN  +  ++IS Y Q      A +IF  +   G+  
Sbjct: 145 LISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRP 204

Query: 357 V-VCWNVMIKGYAQCGRMDEAINLFRQMVN--------KDIVTWNTMIAGYAQIRQMDDA 407
               +  ++     C   +  + L  Q++          D+   + +++ +A+   +  A
Sbjct: 205 TEYTFGSLVT--TACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYA 262

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS---- 463
            K+F +M + RN V+ N L+ G ++ ++  +A K+F+ M      +  S +    S    
Sbjct: 263 RKVFNQM-ETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEY 321

Query: 464 ACAHLAALQLGRQIHHLAIKSGYVNDLF-VGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
           + A    L+ GR++H   I +G V+ +  +GN L+ MYAKCG I +A  +F      D +
Sbjct: 322 SLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSV 381

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           SWNS+I G   NG   EA++ ++ M    + P   T I  LS+C+ +     G ++    
Sbjct: 382 SWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGES 441

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
            ++  I+  V     ++ L +  G L+E  ++   M        W +++GA
Sbjct: 442 LKL-GIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVS-WNSIIGA 490



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 130/507 (25%), Positives = 209/507 (41%), Gaps = 93/507 (18%)

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           +S+V    G+    R   +R L+     ++V   N +I AY++ G    A ++F EMP R
Sbjct: 7   LSFVQSCVGHRGAARFFHSR-LYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLR 65

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI-AAQTAMISGYVQNKRMDEANQIFDKI 352
           N VSW  ++ GY R  +  EA   L  M  + I + Q A +S     + +     +F + 
Sbjct: 66  NCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGR- 124

Query: 353 GTH----------DVVCWNVMIKGYAQC-GRMDEAINLFRQMVNKDIVTWNTMIAGYAQI 401
             H          D V  NV+I  Y +C G +  A+  F  +  K+ V+WN++I+ Y+Q 
Sbjct: 125 QIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQA 184

Query: 402 RQMDDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
                A +IF  M   G R    ++ +L+                             T 
Sbjct: 185 GDQRSAFRIFSSMQYDGSRPTEYTFGSLV-----------------------------TT 215

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
           AC+L+       ++L  QI     KSG + DLFVG+ L++ +AK G +  A  +F   + 
Sbjct: 216 ACSLTE----PDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMET 271

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEM-VMEGVAPDPVTFIGVLSAC----------- 566
            + ++ N L+ G        EA KLF +M  M  V+P+  +++ +LS+            
Sbjct: 272 RNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPE--SYVILLSSFPEYSLAEEVGL 329

Query: 567 -------SHV---GLVDGGLKLFECMTEVYA---------------IEPLVEHYACMIDL 601
                   HV   GLVD  + +   +  +YA                +     +  MI  
Sbjct: 330 KKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITG 389

Query: 602 LSRAGRLDEAFEMVKGMK---IKPNAGIWGTLLGACRMHQNIKLG-RIAVEKLSELEPQK 657
           L + G   EA E  K M+   I P +    + L +C   +  KLG +I  E L       
Sbjct: 390 LDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLN 449

Query: 658 TSCYALLSNMHAEAGRWDEVEKVRVSM 684
            S    L  ++AE G  +E  K+  SM
Sbjct: 450 VSVSNALMTLYAETGYLNECRKIFSSM 476



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 97/205 (47%), Gaps = 20/205 (9%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM-----PQRNLVSWN 81
           K GR++ A++ F+ M  +N+ ++NSMIS YA++G+  +A KLFE M        + V++ 
Sbjct: 666 KCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFV 725

Query: 82  SMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFDLLPN 136
            +++   H   ++E  + F+ M       P +  ++ M     R GEL+K  +  + +P 
Sbjct: 726 GVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPM 785

Query: 137 KEDTACWNAMVAGYAKIGNY-----NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
           K +   W  ++    +          +A ++L  +  +N V++  + + Y   G      
Sbjct: 786 KPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLV 845

Query: 192 KFFEAMEERDV-----VSWNLMLDG 211
           K  + M++ DV      SW  M DG
Sbjct: 846 KARKKMKDADVKKEAGYSWVTMKDG 870


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 206/680 (30%), Positives = 367/680 (53%), Gaps = 58/680 (8%)

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           F P++  +   +    R  ++ KAR+LFD +P + +T+  N MV+GY K  N   A++L 
Sbjct: 42  FDPEISRFNFKLKDLVRANQIAKARQLFDEMPYR-NTSSVNMMVSGYVKSRNLFRARELF 100

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSWNLMLDGYVELDDLD 219
           ++M S+N VSW  M+ GY++N +   A   +  M     + D +++  +L G+ +   L 
Sbjct: 101 ESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLK 160

Query: 220 SAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
              +    I       +++ + +++  Y +   +  A +LF +MP ++ V++N MI  Y 
Sbjct: 161 EVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYT 220

Query: 276 QRGQIEEAARLFIEMPERN--PVSWT-----TMIDGYVRIAKLDEARRLLDQMPYK-NIA 327
           + G  EEA +LF++M   +  P  +T      M  G   +    +   L  +  Y  +I 
Sbjct: 221 KYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIF 280

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF------- 380
              A++  Y ++  +D A  +FD++   D V +N++I GYA  G+ +++ +LF       
Sbjct: 281 VANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTS 340

Query: 381 ------------------------RQMVNKDIVTW--------NTMIAGYAQIRQMDDAV 408
                                   RQ   + +VT         N ++  YA+  + +DA 
Sbjct: 341 FDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDAN 400

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
           +IF  +   RN+V W A+IS ++Q  FH +ALK+F  M +E    D +T A  L A A+L
Sbjct: 401 RIFANLA-YRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANL 459

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
           A++ LG+Q+H   I+ G ++ +F G+ L+ MYA CG +++A  +FK+    +++ WN+LI
Sbjct: 460 ASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALI 519

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI 588
           + Y+ NG+A      F +M+  G+ PD V+F+ VL+ACSH GLV+  L  F  MT+VY +
Sbjct: 520 SAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKL 579

Query: 589 EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVE 648
           +P  +HYA MID+L R+GR +EA  ++  M  +P+  +W ++L +CR+H+N  L + A +
Sbjct: 580 DPRRKHYATMIDVLCRSGRFNEAENLISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAAD 639

Query: 649 KLSELEP-QKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTF 707
           +L +++  +  + Y  +SN++AEAG+W+   KV+ +M   G +K    SW+E+ +++H F
Sbjct: 640 QLFKMDALRDAAAYVNMSNIYAEAGKWENAAKVKKAMRERGVKKVTAYSWVEIDHRVHVF 699

Query: 708 LSGDPKQCRTAEICNTLKTL 727
            + D    +T +I   + +L
Sbjct: 700 TANDRTHPQTEQIRRKINSL 719



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 156/672 (23%), Positives = 278/672 (41%), Gaps = 149/672 (22%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N K+  L ++ ++ +A ++F +M  +NT + N M+S Y K+  +  AR+LFE M  RN V
Sbjct: 50  NFKLKDLVRANQIAKARQLFDEMPYRNTSSVNMMVSGYVKSRNLFRARELFESMFSRNEV 109

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLL 134
           SW  MI GY  N++ KEA  L+ +M R    PD  ++A +++ +     L++  ++   +
Sbjct: 110 SWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHI 169

Query: 135 PNKEDTA---CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
                +A    +N++V  Y K    + A +L   MP+K+ VS+N M++GYTK G    A 
Sbjct: 170 IRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEAL 229

Query: 192 KFFEAMEER---------------------------------------DVVSWNLMLDGY 212
           K F  M                                          D+   N +LD Y
Sbjct: 230 KLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFY 289

Query: 213 VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM------------- 259
            + D +D A   F ++PE + VS+  +++GYA NG+  ++  LF ++             
Sbjct: 290 SKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFA 349

Query: 260 --------------------------PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
                                      +  V   NA++  Y +  + E+A R+F  +  R
Sbjct: 350 TMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYR 409

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
           N V WT +I  YV+    +EA ++  +M  +N+    A  +  ++      AN     +G
Sbjct: 410 NSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKA----SANLASVSLG 465

Query: 354 TH------------DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQI 401
                          V   +V++  YA CG M +AI +F++M +++IV WN +I+ Y+  
Sbjct: 466 KQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYS-- 523

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
            Q  DA   F                               F  M + G   D  +    
Sbjct: 524 -QNGDAEATFSS-----------------------------FADMIESGLYPDSVSFLSV 553

Query: 462 LSACAHLAALQLG-------RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
           L+AC+H   ++          Q++ L  +  +        ++I +  + GR   AE L  
Sbjct: 554 LTACSHRGLVEKALWYFNSMTQVYKLDPRRKHY------ATMIDVLCRSGRFNEAENLIS 607

Query: 515 DA--DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
           +   +P D + W+S++    I+ N   A K  +++       D   ++ + +  +  G  
Sbjct: 608 EMPFEP-DEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEAGKW 666

Query: 573 DGGLKLFECMTE 584
           +   K+ + M E
Sbjct: 667 ENAAKVKKAMRE 678



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 181/407 (44%), Gaps = 75/407 (18%)

Query: 11  KGSYV---FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARK 67
           K SYV   F  N  +    K   ++ A  +F +M + + V+YN +I+ YA NG+   +  
Sbjct: 272 KTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFD 331

Query: 68  LFEQM----------PQRNLVS-----------------------------WNSMIAGYL 88
           LF+++          P   ++S                              N+++  Y 
Sbjct: 332 LFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYA 391

Query: 89  HNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE----DTACWN 144
             +K ++A  +F  +   +   W  +I+ Y +KG  E+A ++F  + N+E    D A + 
Sbjct: 392 KCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEM-NRENVHGDQATFA 450

Query: 145 AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG------YTKNGEMHLASKFFEAME 198
           + +   A + + +  K+L  ++    ++S  S+ SG      Y   G M  A + F+ M 
Sbjct: 451 STLKASANLASVSLGKQLHSSVIRLGLLS--SVFSGSVLVDMYANCGSMKDAIEVFKEMP 508

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARR 254
           +R++V WN ++  Y +  D ++ +  F  + E  +    VS++++L+  +  G + +A  
Sbjct: 509 DRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRGLVEKALW 568

Query: 255 LFDQM-------PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMIDGYV 306
            F+ M       P R   A   MI    + G+  EA  L  EMP E + V W+++++   
Sbjct: 569 YFNSMTQVYKLDPRRKHYA--TMIDVLCRSGRFNEAENLISEMPFEPDEVMWSSVLNS-C 625

Query: 307 RIAK-LDEARRLLDQM----PYKNIAAQTAMISGYVQNKRMDEANQI 348
           RI K  D A++  DQ+      ++ AA   M + Y +  + + A ++
Sbjct: 626 RIHKNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEAGKWENAAKV 672



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 96/203 (47%), Gaps = 13/203 (6%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S VF+ +  +      G +++AI++F +M  +N V +N++ISAY++NG        F  M
Sbjct: 479 SSVFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADM 538

Query: 73  PQRNL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGE 123
            +  L    VS+ S++    H   V++A   F+ M       P    +A MI    R G 
Sbjct: 539 IESGLYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGR 598

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM----PSKNIVSWNSMLS 179
             +A  L   +P + D   W++++       N + AKK  D +      ++  ++ +M +
Sbjct: 599 FNEAENLISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDALRDAAAYVNMSN 658

Query: 180 GYTKNGEMHLASKFFEAMEERDV 202
            Y + G+   A+K  +AM ER V
Sbjct: 659 IYAEAGKWENAAKVKKAMRERGV 681


>gi|357447703|ref|XP_003594127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124365519|gb|ABN09753.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355483175|gb|AES64378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 217/608 (35%), Positives = 325/608 (53%), Gaps = 52/608 (8%)

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           +T   N+++  YAK G+   A+ L D   + + VS N M+SGY +NG++  A K F+ M 
Sbjct: 87  NTFIQNSLINMYAKCGDIKNAQLLFDGFATLDSVSCNIMVSGYVRNGQIDNARKLFDVMP 146

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV----SWVTMLSGYARNGRMLEARR 254
            +  VS+  M+ G+V+      A + F+ +    VV    + V ++S  +  G +L  R 
Sbjct: 147 NKGCVSYTTMIMGFVQNGFFREALEVFKDMRSCGVVPNDLTLVNVISACSHLGEVLNCRM 206

Query: 255 L----FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAK 310
           +         +  V+    ++ AY     + EA RLF EMPERN V+W  M++GY +   
Sbjct: 207 VHGLVVKMFVVGLVIVSTNLMHAYCLCSGVREARRLFDEMPERNLVTWNVMLNGYAKTGL 266

Query: 311 LDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI------------------ 352
           +DEAR L D +  K++ +   MI GY+Q  R+ EA +I+  +                  
Sbjct: 267 VDEARELFDGICDKDVISWGTMIDGYIQKGRLREALEIYRAMLQTGHGPNEVMIVNLVSA 326

Query: 353 ---GT--------HDVV------CWN----VMIKGYAQCGRMDEAINLFRQMVNKDIVTW 391
              GT        H  V      C+N     +I  YA CG MD A   F   V   + +W
Sbjct: 327 CGRGTAIVDGWQLHGTVVKRGFDCYNFIQTTIIYFYAACGMMDLACLQFEVGVKDHLESW 386

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
           N + AG+ +   MD A+K F++M   R+  SW+ +ISG+ Q+E    AL++F  M   G 
Sbjct: 387 NALTAGFIKNGMMDHALKTFDKM-HVRDVFSWSTMISGYAQSEHPKMALELFHKMLAGGI 445

Query: 452 KADHSTLACALSACAHLAALQLGRQIH-HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
           K +  T+    SA A L  LQ G+  H ++  +S   ND     +LI MYAKCG I +A 
Sbjct: 446 KPNEVTMVSVFSAIATLGTLQEGKLAHEYMRSESIPFNDNLRA-ALIDMYAKCGSINSAL 504

Query: 511 LLFKDA-DPVDVIS-WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
             F    D V  +S WN++I G A +G+A+  +++F +M    + P+P+TFIGVLSAC H
Sbjct: 505 QFFNQIRDEVSSVSPWNAIICGLASHGHASMCLEVFSDMQRFHIKPNPITFIGVLSACCH 564

Query: 569 VGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWG 628
            GLV+ G ++F+ M   Y +EP ++HY CMID+L RAG L+EA EM++ M ++ +  IWG
Sbjct: 565 AGLVESGKRIFKTMKSAYNVEPDIKHYGCMIDILGRAGLLEEAEEMIRSMPMEADIVIWG 624

Query: 629 TLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688
           TLL ACR H N+ +G  A E L+ L P       LLSN++A AG+W+EV  VR  M+G  
Sbjct: 625 TLLAACRTHGNVNIGERAAENLARLAPSHGGGKVLLSNIYANAGKWEEVSFVRSVMQGQT 684

Query: 689 AQKQPGCS 696
             ++PG S
Sbjct: 685 MDREPGYS 692



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 143/551 (25%), Positives = 267/551 (48%), Gaps = 32/551 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            F QN  I    K G ++ A  +F   +  ++V+ N M+S Y +NG++++ARKLF+ MP 
Sbjct: 88  TFIQNSLINMYAKCGDIKNAQLLFDGFATLDSVSCNIMVSGYVRNGQIDNARKLFDVMPN 147

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKAREL 130
           +  VS+ +MI G++ N   +EA E+F  M      P+  +   +I+  +  GE+   R +
Sbjct: 148 KGCVSYTTMIMGFVQNGFFREALEVFKDMRSCGVVPNDLTLVNVISACSHLGEVLNCRMV 207

Query: 131 FDLLPNKEDTA---CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
             L+              ++  Y       EA++L D MP +N+V+WN ML+GY K G +
Sbjct: 208 HGLVVKMFVVGLVIVSTNLMHAYCLCSGVREARRLFDEMPERNLVTWNVMLNGYAKTGLV 267

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGY 243
             A + F+ + ++DV+SW  M+DGY++   L  A + ++ + +     N V  V ++S  
Sbjct: 268 DEARELFDGICDKDVISWGTMIDGYIQKGRLREALEIYRAMLQTGHGPNEVMIVNLVSAC 327

Query: 244 ARNGRMLEARRLFDQMPIRNVVAWN----AMIAAYVQRGQIEEAARLFIEMPERNPVSWT 299
            R   +++  +L   +  R    +N     +I  Y   G ++ A   F    + +  SW 
Sbjct: 328 GRGTAIVDGWQLHGTVVKRGFDCYNFIQTTIIYFYAACGMMDLACLQFEVGVKDHLESWN 387

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK-----IGT 354
            +  G+++   +D A +  D+M  +++ + + MISGY Q++    A ++F K     I  
Sbjct: 388 ALTAGFIKNGMMDHALKTFDKMHVRDVFSWSTMISGYAQSEHPKMALELFHKMLAGGIKP 447

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWN-----TMIAGYAQIRQMDDAVK 409
           ++V   +V     A  G + E   L  + +  + + +N      +I  YA+   ++ A++
Sbjct: 448 NEVTMVSV-FSAIATLGTLQEG-KLAHEYMRSESIPFNDNLRAALIDMYAKCGSINSALQ 505

Query: 410 IFEEMGKRRNTVS-WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
            F ++    ++VS WNA+I G   +      L++F  M +   K +  T    LSAC H 
Sbjct: 506 FFNQIRDEVSSVSPWNAIICGLASHGHASMCLEVFSDMQRFHIKPNPITFIGVLSACCHA 565

Query: 469 AALQLGRQIHHLAIKSGY--VNDLFVGNSLITMYAKCGRIQNAELLFKDAD-PVDVISWN 525
             ++ G++I    +KS Y    D+     +I +  + G ++ AE + +      D++ W 
Sbjct: 566 GLVESGKRIFK-TMKSAYNVEPDIKHYGCMIDILGRAGLLEEAEEMIRSMPMEADIVIWG 624

Query: 526 SLIAGYAINGN 536
           +L+A    +GN
Sbjct: 625 TLLAACRTHGN 635



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 55/146 (37%), Positives = 78/146 (53%), Gaps = 31/146 (21%)

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD 517
           L  AL +C+ L+ +  GRQIH L  K G   + F+ NSLI MYAKCG I+NA+LLF    
Sbjct: 56  LVSALKSCSSLSFISQGRQIHSLIFKLGLHFNTFIQNSLINMYAKCGDIKNAQLLFDGFA 115

Query: 518 PVDVISWNSLIAGYAING---NA----------------------------TEAIKLFEE 546
            +D +S N +++GY  NG   NA                             EA+++F++
Sbjct: 116 TLDSVSCNIMVSGYVRNGQIDNARKLFDVMPNKGCVSYTTMIMGFVQNGFFREALEVFKD 175

Query: 547 MVMEGVAPDPVTFIGVLSACSHVGLV 572
           M   GV P+ +T + V+SACSH+G V
Sbjct: 176 MRSCGVVPNDLTLVNVISACSHLGEV 201



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/293 (21%), Positives = 136/293 (46%), Gaps = 23/293 (7%)

Query: 14  YVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP 73
           Y F Q   I      G ++ A   F    + +  ++N++ + + KNG ++ A K F++M 
Sbjct: 351 YNFIQTTIIYFYAACGMMDLACLQFEVGVKDHLESWNALTAGFIKNGMMDHALKTFDKMH 410

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARE 129
            R++ SW++MI+GY  ++  K A ELF KM     +P+  +   + +     G L++ + 
Sbjct: 411 VRDVFSWSTMISGYAQSEHPKMALELFHKMLAGGIKPNEVTMVSVFSAIATLGTLQEGKL 470

Query: 130 LFDLLPNKEDTACWN-----AMVAGYAKIGNYNEAKKLLDAMPSK--NIVSWNSMLSGYT 182
             + +  + ++  +N     A++  YAK G+ N A +  + +  +  ++  WN+++ G  
Sbjct: 471 AHEYM--RSESIPFNDNLRAALIDMYAKCGSINSALQFFNQIRDEVSSVSPWNAIICGLA 528

Query: 183 KNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIP-----EQNV 233
            +G   +  + F  M+   +    +++  +L        ++S  + F+ +      E ++
Sbjct: 529 SHGHASMCLEVFSDMQRFHIKPNPITFIGVLSACCHAGLVESGKRIFKTMKSAYNVEPDI 588

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAAR 285
             +  M+    R G + EA  +   MP+  ++V W  ++AA    G +    R
Sbjct: 589 KHYGCMIDILGRAGLLEEAEEMIRSMPMEADIVIWGTLLAACRTHGNVNIGER 641


>gi|449458231|ref|XP_004146851.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
 gi|449522932|ref|XP_004168479.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Cucumis sativus]
          Length = 705

 Score =  358 bits (920), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 211/620 (34%), Positives = 340/620 (54%), Gaps = 34/620 (5%)

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSK---NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV 202
           +V+ Y++ G  ++A+K+  + P +   N + WNS++     +G    A + +  M    V
Sbjct: 76  LVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIRANVYHGYCIEALQLYGKMRNYGV 135

Query: 203 V----SWNLMLDGYVELDDLDSAWKFFQKIPE---QNVVSWVTMLSG-YARNGRMLEARR 254
           +    ++ L+L     L   +        + +   QN +     L G YA+  RM +AR+
Sbjct: 136 LGDGFTFPLLLRASSNLGAFNMCKNLHCHVVQFGFQNHLHVGNELIGMYAKLERMDDARK 195

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAK 310
           +FD+M I++VV+WN M++ Y     +  A+R+F +M     E NPV+WT+++  + R   
Sbjct: 196 VFDKMRIKSVVSWNTMVSGYAYNYDVNGASRMFHQMELEGVEPNPVTWTSLLSSHARCGH 255

Query: 311 LDEARRLLDQMPYKNIAAQTAMIS---------GYVQNKRMDEANQIFDKIGTHD-VVCW 360
           L+E   L  +M  K +     M++           + + +M     +  K G +D +   
Sbjct: 256 LEETMVLFCKMRMKGVGPTAEMLAVVLSVCADLATLNSGQMIHGYMV--KGGFNDYLFAK 313

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK---- 416
           N +I  Y + G + +A  LF +M  K++V+WN +I+ +A+    D A+++  ++ K    
Sbjct: 314 NALITLYGKGGGVGDAEKLFHEMKVKNLVSWNALISSFAESGVYDKALELLSQLEKMEAY 373

Query: 417 ---RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQL 473
              + N ++W+A+I GF       ++L++F  M     KA+  T+A  LS CA LAAL L
Sbjct: 374 PEMKPNVITWSAIICGFASKGLGEESLEVFRKMQLANVKANSVTIASVLSICAMLAALNL 433

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           GR++H   I++   +++ VGN LI MY KCG  +   ++F+  +  D ISWNS+IAGY  
Sbjct: 434 GREMHGHVIRARMDDNVLVGNGLINMYTKCGSFKPGFMVFEKLENRDSISWNSMIAGYGT 493

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVE 593
           +G   +A+  F  M+  G  PD VTFI  LSACSH GLV  G  LF  M + + IEP +E
Sbjct: 494 HGLGKDALATFNHMIKSGYRPDGVTFIAALSACSHAGLVAEGHWLFSQMRQNFKIEPEIE 553

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653
           HYACM+DLL RAG ++EA  ++KGM ++PNA IW +LL +CRMH++  L   A  K+S L
Sbjct: 554 HYACMVDLLGRAGLVEEASNIIKGMPMEPNAYIWSSLLNSCRMHKDTDLAEEAAAKISNL 613

Query: 654 EPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPK 713
             + T  + LLSN+ A + RW++  +VR+S    G +K PG SWIEVK +++ F +G   
Sbjct: 614 NSKITGSHMLLSNIFAASCRWEDSARVRISARAKGLKKVPGWSWIEVKKKVYMFKAGYTI 673

Query: 714 QCRTAEICNTLKTLAAQIRN 733
                ++   L  LA QI N
Sbjct: 674 SEGLEKVDEILHDLAFQIEN 693



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 122/493 (24%), Positives = 215/493 (43%), Gaps = 101/493 (20%)

Query: 52  MISAYAKNGRVNDARKLFEQMP---QRNLVSWNSMIAGYLHNDKVKEARELFDKM----F 104
           ++S Y++ G V+DARK+F   P     N + WNS+I   +++    EA +L+ KM     
Sbjct: 76  LVSIYSRYGLVSDARKVFGSAPFECYSNFLLWNSIIRANVYHGYCIEALQLYGKMRNYGV 135

Query: 105 RPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKK 161
             D F++ L++   +  G     + L   +     +      N ++  YAK+   ++A+K
Sbjct: 136 LGDGFTFPLLLRASSNLGAFNMCKNLHCHVVQFGFQNHLHVGNELIGMYAKLERMDDARK 195

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDD 217
           + D M  K++VSWN+M+SGY  N +++ AS+ F  ME    E + V+W  +L  +     
Sbjct: 196 VFDKMRIKSVVSWNTMVSGYAYNYDVNGASRMFHQMELEGVEPNPVTWTSLLSSHARCGH 255

Query: 218 LDSAWKFFQKIPEQNVVSWVTML--------------SG--------------------- 242
           L+     F K+  + V     ML              SG                     
Sbjct: 256 LEETMVLFCKMRMKGVGPTAEMLAVVLSVCADLATLNSGQMIHGYMVKGGFNDYLFAKNA 315

Query: 243 ----YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PE 292
               Y + G + +A +LF +M ++N+V+WNA+I+++ + G  ++A  L  ++      PE
Sbjct: 316 LITLYGKGGGVGDAEKLFHEMKVKNLVSWNALISSFAESGVYDKALELLSQLEKMEAYPE 375

Query: 293 RNP--VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD 350
             P  ++W+ +I G+      +E+  +  +M   N+ A +  I+  +    M  A  +  
Sbjct: 376 MKPNVITWSAIICGFASKGLGEESLEVFRKMQLANVKANSVTIASVLSICAMLAALNLGR 435

Query: 351 KIGTH--------DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIR 402
           ++  H        +V+  N +I  Y +CG       +F ++ N+D ++WN+MIAGY    
Sbjct: 436 EMHGHVIRARMDDNVLVGNGLINMYTKCGSFKPGFMVFEKLENRDSISWNSMIAGYGT-- 493

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
                      +GK                     DAL  F  M + G + D  T   AL
Sbjct: 494 ---------HGLGK---------------------DALATFNHMIKSGYRPDGVTFIAAL 523

Query: 463 SACAHLAALQLGR 475
           SAC+H   +  G 
Sbjct: 524 SACSHAGLVAEGH 536



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 182/399 (45%), Gaps = 68/399 (17%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           N +I  YAK  R++DARK+F++M  +++VSWN+M++GY +N  V  A  +F +M      
Sbjct: 178 NELIGMYAKLERMDDARKVFDKMRIKSVVSWNTMVSGYAYNYDVNGASRMFHQMELEGVE 237

Query: 106 PDLFSWALMITCYTRKGELEKARELF------DLLPNKE----------DTACWNA--MV 147
           P+  +W  +++ + R G LE+   LF       + P  E          D A  N+  M+
Sbjct: 238 PNPVTWTSLLSSHARCGHLEETMVLFCKMRMKGVGPTAEMLAVVLSVCADLATLNSGQMI 297

Query: 148 AGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL 207
            GY   G +N+            + + N++++ Y K G +  A K F  M+ +++VSWN 
Sbjct: 298 HGYMVKGGFNDY-----------LFAKNALITLYGKGGGVGDAEKLFHEMKVKNLVSWNA 346

Query: 208 MLDGYVELDDLDSAWKFFQKI------PEQ--NVVSWVTMLSGYARNGRMLEARRLFDQM 259
           ++  + E    D A +   ++      PE   NV++W  ++ G+A  G   E+  +F +M
Sbjct: 347 LISSFAESGVYDKALELLSQLEKMEAYPEMKPNVITWSAIICGFASKGLGEESLEVFRKM 406

Query: 260 PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLD 319
            + NV A +  IA+ +    +  A  L  EM             G+V  A++D+      
Sbjct: 407 QLANVKANSVTIASVLSICAMLAALNLGREM------------HGHVIRARMDD------ 448

Query: 320 QMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
                N+     +I+ Y +         +F+K+   D + WN MI GY   G   +A+  
Sbjct: 449 -----NVLVGNGLINMYTKCGSFKPGFMVFEKLENRDSISWNSMIAGYGTHGLGKDALAT 503

Query: 380 FRQMVNK----DIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           F  M+      D VT+   ++  +    + +   +F +M
Sbjct: 504 FNHMIKSGYRPDGVTFIAALSACSHAGLVAEGHWLFSQM 542



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 73/317 (23%), Positives = 148/317 (46%), Gaps = 50/317 (15%)

Query: 9   GNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKL 68
           G    Y+F +N  IT  GK G V +A K+F +M  KN V++N++IS++A++G  + A +L
Sbjct: 304 GGFNDYLFAKNALITLYGKGGGVGDAEKLFHEMKVKNLVSWNALISSFAESGVYDKALEL 363

Query: 69  FEQMPQR--------NLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMIT 116
             Q+ +         N+++W+++I G+      +E+ E+F KM     + +  + A +++
Sbjct: 364 LSQLEKMEAYPEMKPNVITWSAIICGFASKGLGEESLEVFRKMQLANVKANSVTIASVLS 423

Query: 117 CYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS 173
                  L   RE+   +      ++    N ++  Y K G++     + + + +++ +S
Sbjct: 424 ICAMLAALNLGREMHGHVIRARMDDNVLVGNGLINMYTKCGSFKPGFMVFEKLENRDSIS 483

Query: 174 WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML-DGYVELDDLDSAWKFFQKIPEQN 232
           WNSM++GY  +G           + +  + ++N M+  GY                   +
Sbjct: 484 WNSMIAGYGTHG-----------LGKDALATFNHMIKSGY-----------------RPD 515

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPIR-----NVVAWNAMIAAYVQRGQIEEAARLF 287
            V+++  LS  +  G + E   LF QM         +  +  M+    + G +EEA+ + 
Sbjct: 516 GVTFIAALSACSHAGLVAEGHWLFSQMRQNFKIEPEIEHYACMVDLLGRAGLVEEASNII 575

Query: 288 IEMP-ERNPVSWTTMID 303
             MP E N   W+++++
Sbjct: 576 KGMPMEPNAYIWSSLLN 592


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  358 bits (920), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 228/717 (31%), Positives = 368/717 (51%), Gaps = 114/717 (15%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKI--FSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           V + N KI    + G +E A+++    Q S+  T TY S++   A    + D +K+    
Sbjct: 66  VTDYNAKILHFCQLGDLENAMELVCMCQKSELETKTYGSVLQLCAGLKSLTDGKKV---- 121

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD 132
              +++  NS+         V EA  L              +++ Y   G+L++ R +FD
Sbjct: 122 --HSIIKSNSV--------GVDEALGL-------------KLVSFYATCGDLKEGRRVFD 158

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
            +  K++   WN MV+ YAKIG++ E+  L   M  K I           +      AS+
Sbjct: 159 TM-EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGI-----------EGKRPESASE 206

Query: 193 FFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSGYARNGR 248
            F+ + +RDV+SWN M+ GYV     +     ++++     + ++ + +++L G A +G 
Sbjct: 207 LFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSG- 265

Query: 249 MLEARRLFDQMPI-----RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMID 303
            L   +    + I     R +   N ++  Y + G ++ A R+F +M ERN VSWT+MI 
Sbjct: 266 TLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIA 325

Query: 304 GYVRIAKLDEARRLLDQMPYK----NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV-- 357
           GY R    D A  LL QM  +    ++ A T+++    ++  +D    + D I  +++  
Sbjct: 326 GYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMAS 385

Query: 358 ---VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
              VC N ++  YA+CG M+ A ++F  MV KDI                          
Sbjct: 386 NLFVC-NALMDMYAKCGSMEGANSVFSTMVVKDI-------------------------- 418

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
                 +SWN ++                        K D  T+AC L ACA L+AL+ G
Sbjct: 419 ------ISWNTMVGEL---------------------KPDSRTMACILPACASLSALERG 451

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
           ++IH   +++GY +D  V N+L+ +Y KCG +  A LLF      D++SW  +IAGY ++
Sbjct: 452 KEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMH 511

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEH 594
           G   EAI  F EM   G+ PD V+FI +L ACSH GL++ G + F  M   + IEP +EH
Sbjct: 512 GYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEH 571

Query: 595 YACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE 654
           YACM+DLLSR G L +A++ ++ + I P+A IWG LL  CR++ +I+L     E++ ELE
Sbjct: 572 YACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELE 631

Query: 655 PQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD 711
           P+ T  Y LL+N++AEA + +EV+++R  +   G +K PGCSWIE+K +++ F+SG+
Sbjct: 632 PENTGYYVLLANIYAEAEKREEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGN 688



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 122/299 (40%), Gaps = 72/299 (24%)

Query: 10  NKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISA-------------- 55
           N  S +F  N  +    K G +E A  +FS M  K+ +++N+M+                
Sbjct: 382 NMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPA 441

Query: 56  -----------------------------------YAKNGRVNDARKLFEQMPQRNLVSW 80
                                              Y K G +  AR LF+ +P ++LVSW
Sbjct: 442 CASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSW 501

Query: 81  NSMIAGY-LH---NDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKA-------RE 129
             MIAGY +H   N+ +    E+ D    PD  S+  ++   +  G LE+        + 
Sbjct: 502 TVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKN 561

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNGEMH 188
            F++ P  E  AC   MV   ++ GN ++A K ++ +P + +   W ++L G     ++ 
Sbjct: 562 DFNIEPKLEHYAC---MVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIE 618

Query: 189 LASKFFE---AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV-----VSWVTM 239
           LA K  E    +E  +   + L+ + Y E +  +   +  +KI ++ +      SW+ +
Sbjct: 619 LAEKVAERVFELEPENTGYYVLLANIYAEAEKREEVKRMREKIGKKGLRKNPGCSWIEI 677


>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 621

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 196/513 (38%), Positives = 299/513 (58%), Gaps = 28/513 (5%)

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV----QRGQIEEAARLFIEMPERNPVSW 298
           YA+ GRM +AR LFD+M +R+ ++WN M++AY       G +E   R+  E  E N V+W
Sbjct: 87  YAKLGRMRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTW 146

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----------TAMISGYVQNKRMDEANQI 348
           T++I  Y R    +EA  L   M  K +              A +  +V+ K + E    
Sbjct: 147 TSLISSYARSGWHEEAMELFGLMRMKGVEVSGEALAVVISICADLGAFVRAKIIHE---- 202

Query: 349 FDKIGTHDVVCW--NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDD 406
           +   G  +   +  + +I  Y + G ++ A NLF +M NK + +WN +I  +A+    D+
Sbjct: 203 YAVKGGFEEYSFVKSALICVYGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAGLCDE 262

Query: 407 AVKIFEEMGK-------RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
           A++IF ++ +       R N VSW+A+I GF       +AL++F  M      A+  T++
Sbjct: 263 ALEIFSQLERSGDCPRLRPNVVSWSAIIDGFASKGREKEALELFRRMQHAKILANAVTIS 322

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
             LS CA LAAL LGR+IH   +++  VN++ VGN L+ MYAKCG ++   ++F+  +  
Sbjct: 323 TVLSLCAELAALHLGREIHGHVVRAVMVNNILVGNGLVNMYAKCGCLKEGHMIFEKTERK 382

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
           D+ISWNS+I GY ++G    A++ F++M+  G  PD VTF+ VLS+CSH GLV  G +LF
Sbjct: 383 DLISWNSMITGYGMHGLGMNALETFDQMIKLGFKPDGVTFVAVLSSCSHSGLVHEGRRLF 442

Query: 580 ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
           + M + Y IEP +EHYACM+DLL RAG L EA E+VK M + PNA +WG LL +CRMH N
Sbjct: 443 DQMLKKYRIEPQMEHYACMVDLLGRAGLLREASEIVKNMPVAPNACVWGALLNSCRMHNN 502

Query: 640 IKLGRIAVEKLSELEPQKTS-CYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWI 698
            ++       L  L  ++T+  Y LLSN++A +GRW++  +VR S +  G +K PG SWI
Sbjct: 503 TEIAEETASHLFNLSHRETTGTYMLLSNIYAASGRWEDSARVRTSAKTKGLKKNPGQSWI 562

Query: 699 EVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           +V+  ++TF +G+  Q    +I   L+ L  Q+
Sbjct: 563 KVEKNVYTFSAGNNMQRGFEQIFEILEELTFQM 595



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 181/395 (45%), Gaps = 54/395 (13%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           N +I  YAK GR+ DAR LF++M  R+ +SWN+M++ Y  N     A E+F +M      
Sbjct: 81  NELIGMYAKLGRMRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGME 140

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAM---VAGYAKIGNYNEAKKL 162
           P+L +W  +I+ Y R G  E+A ELF L+  K       A+   ++  A +G +  AK +
Sbjct: 141 PNLVTWTSLISSYARSGWHEEAMELFGLMRMKGVEVSGEALAVVISICADLGAFVRAKII 200

Query: 163 LDAMPSKNIVSW----NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDL 218
            +         +    ++++  Y K+G+++ A   F  M+ + + SWN ++  + E    
Sbjct: 201 HEYAVKGGFEEYSFVKSALICVYGKHGDVNGAWNLFLEMKNKSLASWNALITSHAEAGLC 260

Query: 219 DSAWKFFQKIPEQ--------NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAM 270
           D A + F ++           NVVSW  ++ G+A  GR  EA  LF +M    ++A    
Sbjct: 261 DEALEIFSQLERSGDCPRLRPNVVSWSAIIDGFASKGREKEALELFRRMQHAKILA---- 316

Query: 271 IAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNI 326
                                  N V+ +T++     +A L   R +    +  +   NI
Sbjct: 317 -----------------------NAVTISTVLSLCAELAALHLGREIHGHVVRAVMVNNI 353

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV-- 384
                +++ Y +   + E + IF+K    D++ WN MI GY   G    A+  F QM+  
Sbjct: 354 LVGNGLVNMYAKCGCLKEGHMIFEKTERKDLISWNSMITGYGMHGLGMNALETFDQMIKL 413

Query: 385 --NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
               D VT+  +++  +    + +  ++F++M K+
Sbjct: 414 GFKPDGVTFVAVLSSCSHSGLVHEGRRLFDQMLKK 448



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 177/371 (47%), Gaps = 31/371 (8%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S++   N+ I    K GR+ +A  +F +MS ++ +++N+M+SAYA N   N A ++F++M
Sbjct: 75  SHLHVGNELIGMYAKLGRMRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRM 134

Query: 73  P----QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL----FSWALMITCYTRKGEL 124
                + NLV+W S+I+ Y  +   +EA ELF  M    +     + A++I+     G  
Sbjct: 135 ESEGMEPNLVTWTSLISSYARSGWHEEAMELFGLMRMKGVEVSGEALAVVISICADLGAF 194

Query: 125 EKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
            +A+ + +       +E +   +A++  Y K G+ N A  L   M +K++ SWN++++ +
Sbjct: 195 VRAKIIHEYAVKGGFEEYSFVKSALICVYGKHGDVNGAWNLFLEMKNKSLASWNALITSH 254

Query: 182 TKNGEMHLASKFFEAMEER--------DVVSWNLMLDGYVELDDLDSAWKFFQKIPE--- 230
            + G    A + F  +E          +VVSW+ ++DG+        A + F+++     
Sbjct: 255 AEAGLCDEALEIFSQLERSGDCPRLRPNVVSWSAIIDGFASKGREKEALELFRRMQHAKI 314

Query: 231 -QNVVSWVTMLSGYARNGRMLEARRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAAR 285
             N V+  T+LS  A    +   R +   +     + N++  N ++  Y + G ++E   
Sbjct: 315 LANAVTISTVLSLCAELAALHLGREIHGHVVRAVMVNNILVGNGLVNMYAKCGCLKEGHM 374

Query: 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKR 341
           +F +   ++ +SW +MI GY        A    DQM             A++S    +  
Sbjct: 375 IFEKTERKDLISWNSMITGYGMHGLGMNALETFDQMIKLGFKPDGVTFVAVLSSCSHSGL 434

Query: 342 MDEANQIFDKI 352
           + E  ++FD++
Sbjct: 435 VHEGRRLFDQM 445



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 123/247 (49%), Gaps = 9/247 (3%)

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
           M + G   D  T    + ACA++ +  LG+ IH   ++ G+ + L VGN LI MYAK GR
Sbjct: 33  MRKIGTLGDGFTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKLGR 92

Query: 506 IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565
           +++A  LF        ISWN++++ YA N +   A+++F+ M  EG+ P+ VT+  ++S+
Sbjct: 93  MRDARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLISS 152

Query: 566 CSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEM----VKGMKIK 621
            +  G  +  ++LF  M  +  +E   E  A +I + +  G    A  +    VKG   +
Sbjct: 153 YARSGWHEEAMELFGLM-RMKGVEVSGEALAVVISICADLGAFVRAKIIHEYAVKG-GFE 210

Query: 622 PNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVR 681
             + +   L+     H ++     A     E++ +  + +  L   HAEAG  DE  ++ 
Sbjct: 211 EYSFVKSALICVYGKHGDVN---GAWNLFLEMKNKSLASWNALITSHAEAGLCDEALEIF 267

Query: 682 VSMEGSG 688
             +E SG
Sbjct: 268 SQLERSG 274



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 76/147 (51%), Gaps = 15/147 (10%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           N +  N +++ YAK G + +   +FE+  +++L+SWNSMI GY  +     A E FD+M 
Sbjct: 352 NILVGNGLVNMYAKCGCLKEGHMIFEKTERKDLISWNSMITGYGMHGLGMNALETFDQMI 411

Query: 104 ---FRPDLFSWALMITCYTRKGELEKARELFDLL-------PNKEDTACWNAMVAGYAKI 153
              F+PD  ++  +++  +  G + + R LFD +       P  E  AC   MV    + 
Sbjct: 412 KLGFKPDGVTFVAVLSSCSHSGLVHEGRRLFDQMLKKYRIEPQMEHYAC---MVDLLGRA 468

Query: 154 GNYNEAKKLLDAMP-SKNIVSWNSMLS 179
           G   EA +++  MP + N   W ++L+
Sbjct: 469 GLLREASEIVKNMPVAPNACVWGALLN 495



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/274 (21%), Positives = 116/274 (42%), Gaps = 48/274 (17%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQK--------NTVTYNSMISAYAKNGRVNDARKLFE 70
           N  IT   ++G  +EA++IFSQ+ +         N V+++++I  +A  GR  +A +LF 
Sbjct: 248 NALITSHAEAGLCDEALEIFSQLERSGDCPRLRPNVVSWSAIIDGFASKGREKEALELFR 307

Query: 71  QMPQ----RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWAL----MITCYTRKG 122
           +M       N V+ +++++       +   RE+   + R  + +  L    ++  Y + G
Sbjct: 308 RMQHAKILANAVTISTVLSLCAELAALHLGREIHGHVVRAVMVNNILVGNGLVNMYAKCG 367

Query: 123 ELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSML 178
            L++   +F+    K D   WN+M+ GY   G    A +  D M         V++ ++L
Sbjct: 368 CLKEGHMIFEKTERK-DLISWNSMITGYGMHGLGMNALETFDQMIKLGFKPDGVTFVAVL 426

Query: 179 SGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
           S  + +G +H   + F+ M ++  +                          E  +  +  
Sbjct: 427 SSCSHSGLVHEGRRLFDQMLKKYRI--------------------------EPQMEHYAC 460

Query: 239 MLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMI 271
           M+    R G + EA  +   MP+  N   W A++
Sbjct: 461 MVDLLGRAGLLREASEIVKNMPVAPNACVWGALL 494


>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
 gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 185/465 (39%), Positives = 287/465 (61%), Gaps = 5/465 (1%)

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY--KN 325
           N +I+ YV+ G +  A+++F  MP+R+ VS+ +MIDGYV+  ++D AR + D +P   +N
Sbjct: 166 NCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLARVVFDCIPLEERN 225

Query: 326 IAAQTAMISGYVQNKR-MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
           + +  ++I GY Q++  +  A Q+F K+   D++ WN MI G  +CGRM++A  LF +M 
Sbjct: 226 LISWNSLIRGYAQSEDGILVAWQLFAKMPERDLISWNSMIDGCVKCGRMEDAQGLFDRMP 285

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
           N+DIV+W  MI GYA+  ++D A  +F+EM   R+ V++NA++ G++QN + ++AL IF 
Sbjct: 286 NRDIVSWANMIDGYAKNGRVDIARSLFDEM-PERDVVAYNAMMGGYVQNGYCMEALGIFY 344

Query: 445 LMTQEGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
            M  +G    D++TL  ALSA A L  +  G  IH    + G+  D  +G +LI MY+KC
Sbjct: 345 GMQSDGNFLLDNATLLIALSAIAQLGHIDKGVAIHRFIEEIGFSLDGRLGVALIDMYSKC 404

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
           G I+NA ++F++     V  WN++I G AI+G    A     EM    V PD +TFIG+L
Sbjct: 405 GSIENAMMVFENIKEKSVDHWNAIIGGLAIHGLGELAFDFLMEMERMRVEPDDITFIGLL 464

Query: 564 SACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPN 623
           +AC H GLV  G+  FE M  V+ +EP ++HY CM+D+L RAG ++EA   V+ M  +PN
Sbjct: 465 NACGHAGLVKEGMMCFELMRRVHKVEPKLQHYGCMVDILGRAGHIEEAKNFVEEMPFEPN 524

Query: 624 AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVS 683
             IW +LL AC+ H++  +G+   E L  L+    S Y L SNM+A  G+W++V KVR  
Sbjct: 525 DVIWRSLLSACKTHESFNVGQPVAENLMRLDSPSPSSYVLASNMYAGLGKWNDVRKVRAM 584

Query: 684 MEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLA 728
           M+    +K PGCSWIE++  ++ F   D    + + I + L +L+
Sbjct: 585 MKQKNLKKIPGCSWIELEGHVYAFFVQDKSHPQFSGIYSILDSLS 629



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 141/520 (27%), Positives = 248/520 (47%), Gaps = 70/520 (13%)

Query: 80  WNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLP 135
           WN++I  Y H    KEA  L   M       D F+ +L++   +R G +++  ++  LL 
Sbjct: 95  WNAIIKTYSHGHDPKEAMWLVSLMLENGAFADKFTLSLVLKACSRVGLVKEGMQIHGLLK 154

Query: 136 NKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
             E   D    N +++ Y K G    A ++ D MP ++ VS+NSM+ GY K G + LA  
Sbjct: 155 KLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLARV 214

Query: 193 FFEA--MEERDVVSWNLMLDGYVELDD-LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRM 249
            F+   +EER+++SWN ++ GY + +D +  AW+ F K+PE++++SW +M+ G  + GRM
Sbjct: 215 VFDCIPLEERNLISWNSLIRGYAQSEDGILVAWQLFAKMPERDLISWNSMIDGCVKCGRM 274

Query: 250 LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIA 309
            +A+ LFD+MP R++V+W  MI  Y + G+++ A  LF EMPER+ V++  M+ GYV+  
Sbjct: 275 EDAQGLFDRMPNRDIVSWANMIDGYAKNGRVDIARSLFDEMPERDVVAYNAMMGGYVQNG 334

Query: 310 KLDEARRLLDQMPYK-----NIAAQTAMISGYVQNKRMDEA---NQIFDKIG-THDVVCW 360
              EA  +   M        + A     +S   Q   +D+    ++  ++IG + D    
Sbjct: 335 YCMEALGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDKGVAIHRFIEEIGFSLDGRLG 394

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
             +I  Y++CG ++ A+ +F  +  K +  WN +I G A     + A     EM + R  
Sbjct: 395 VALIDMYSKCGSIENAMMVFENIKEKSVDHWNAIIGGLAIHGLGELAFDFLMEMERMR-- 452

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH-------LAALQL 473
                                          + D  T    L+AC H       +   +L
Sbjct: 453 ------------------------------VEPDDITFIGLLNACGHAGLVKEGMMCFEL 482

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGY 531
            R++H +  K  +         ++ +  + G I+ A+   ++   +P DVI W SL++  
Sbjct: 483 MRRVHKVEPKLQHY------GCMVDILGRAGHIEEAKNFVEEMPFEPNDVI-WRSLLSAC 535

Query: 532 AINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
             + +      + E + M   +P P ++  VL++  + GL
Sbjct: 536 KTHESFNVGQPVAENL-MRLDSPSPSSY--VLASNMYAGL 572



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 155/291 (53%), Gaps = 13/291 (4%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS +F QN  I+   K G +  A ++F +M ++++V+YNSMI  Y K GR++ AR +F+ 
Sbjct: 159 GSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLARVVFDC 218

Query: 72  MP--QRNLVSWNSMIAGYLHN-DKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAR 128
           +P  +RNL+SWNS+I GY  + D +  A +LF KM   DL SW  MI    + G +E A+
Sbjct: 219 IPLEERNLISWNSLIRGYAQSEDGILVAWQLFAKMPERDLISWNSMIDGCVKCGRMEDAQ 278

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
            LFD +PN+ D   W  M+ GYAK G  + A+ L D MP +++V++N+M+ GY +NG   
Sbjct: 279 GLFDRMPNR-DIVSWANMIDGYAKNGRVDIARSLFDEMPERDVVAYNAMMGGYVQNGYCM 337

Query: 189 LASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV----SWVTM 239
            A   F  M+       D  +  + L    +L  +D      + I E          V +
Sbjct: 338 EALGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDKGVAIHRFIEEIGFSLDGRLGVAL 397

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
           +  Y++ G +  A  +F+ +  ++V  WNA+I      G  E A    +EM
Sbjct: 398 IDMYSKCGSIENAMMVFENIKEKSVDHWNAIIGGLAIHGLGELAFDFLMEM 448



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 155/329 (47%), Gaps = 21/329 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I    K GR+E+A  +F +M  ++ V++ +MI  YAKNGRV+ AR LF++MP+R++V
Sbjct: 262 NSMIDGCVKCGRMEDAQGLFDRMPNRDIVSWANMIDGYAKNGRVDIARSLFDEMPERDVV 321

Query: 79  SWNSMIAGYLHNDKVKEARELF-----DKMFRPDLFSWALMITCYTRKGELEKARELFDL 133
           ++N+M+ GY+ N    EA  +F     D  F  D  +  + ++   + G ++K   +   
Sbjct: 322 AYNAMMGGYVQNGYCMEALGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDKGVAIHRF 381

Query: 134 LPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           +       D     A++  Y+K G+   A  + + +  K++  WN+++ G   +G   LA
Sbjct: 382 IEEIGFSLDGRLGVALIDMYSKCGSIENAMMVFENIKEKSVDHWNAIIGGLAIHGLGELA 441

Query: 191 SKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-----EQNVVSWVTMLS 241
             F   ME    E D +++  +L+       +      F+ +      E  +  +  M+ 
Sbjct: 442 FDFLMEMERMRVEPDDITFIGLLNACGHAGLVKEGMMCFELMRRVHKVEPKLQHYGCMVD 501

Query: 242 GYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVS 297
              R G + EA+   ++MP   N V W ++++A          +  A   + +   +P S
Sbjct: 502 ILGRAGHIEEAKNFVEEMPFEPNDVIWRSLLSACKTHESFNVGQPVAENLMRLDSPSPSS 561

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
           +    + Y  + K ++ R++   M  KN+
Sbjct: 562 YVLASNMYAGLGKWNDVRKVRAMMKQKNL 590



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 145/287 (50%), Gaps = 18/287 (6%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKV 93
           A ++F++M +++ +++NSMI    K GR+ DA+ LF++MP R++VSW +MI GY  N +V
Sbjct: 246 AWQLFAKMPERDLISWNSMIDGCVKCGRMEDAQGLFDRMPNRDIVSWANMIDGYAKNGRV 305

Query: 94  KEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE----DTACWNAMVAG 149
             AR LFD+M   D+ ++  M+  Y + G   +A  +F  + +      D A     ++ 
Sbjct: 306 DIARSLFDEMPERDVVAYNAMMGGYVQNGYCMEALGIFYGMQSDGNFLLDNATLLIALSA 365

Query: 150 YAKIGNYNEA---KKLLDAMP-SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW 205
            A++G+ ++     + ++ +  S +     +++  Y+K G +  A   FE ++E+ V  W
Sbjct: 366 IAQLGHIDKGVAIHRFIEEIGFSLDGRLGVALIDMYSKCGSIENAMMVFENIKEKSVDHW 425

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFDQMPI 261
           N ++ G       + A+ F  ++    V    ++++ +L+     G + E    F+ M  
Sbjct: 426 NAIIGGLAIHGLGELAFDFLMEMERMRVEPDDITFIGLLNACGHAGLVKEGMMCFELMRR 485

Query: 262 RNVVA-----WNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMI 302
            + V      +  M+    + G IEEA     EMP E N V W +++
Sbjct: 486 VHKVEPKLQHYGCMVDILGRAGHIEEAKNFVEEMPFEPNDVIWRSLL 532


>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 215/705 (30%), Positives = 363/705 (51%), Gaps = 62/705 (8%)

Query: 88  LHNDKVKEARELFDKMFRPDL--FSWALMITCYTRKGELEKARELFDLLPN---KEDTAC 142
           LH + +K A ++F K     L   ++  +I   +    LE  R++   +     + D   
Sbjct: 77  LHREALK-AFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMIL 135

Query: 143 WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE----MHLASKFFEAME 198
            N +++ Y K G+  EA+ + D+MP KN+VSW SM+SGY++ GE    + L  +   +  
Sbjct: 136 QNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGH 195

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARNGRMLEARR 254
             D  ++  ++     LDD   A +    + +     ++++   ++S Y +  +M +A  
Sbjct: 196 IPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAIN 255

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDG--YVRIAKLD 312
           +F ++ I+++++W +MIA + Q G   EA   F EM  ++       + G  +   +KL 
Sbjct: 256 VFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLL 315

Query: 313 EAR--RLLDQMPYK-----NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIK 365
           E    R +  +  K     ++ A  ++   Y +   ++ A  +F  I   D+V WN +I 
Sbjct: 316 EPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIA 375

Query: 366 GYAQCGRMDEAINLFRQM---------------------------------------VNK 386
           G+A      E+ + F QM                                        N 
Sbjct: 376 GFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNL 435

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446
           DI   N++++ Y++   ++DA+++FE++G + + VSWN L++  LQ     + L++  LM
Sbjct: 436 DIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLM 495

Query: 447 TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI 506
                K DH TL   L +   +A+ ++G QIH   +KSG   D+ V N+LI MY KCG +
Sbjct: 496 FASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSL 555

Query: 507 QNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
           + A  +F      D+ISW+SLI GYA  G   EA +LF  M   GV P+ +TF+G+L+AC
Sbjct: 556 ECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTAC 615

Query: 567 SHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGI 626
           SH+G+V+ GLKL+  M E Y I P  EH +CM+DLL+RAG LD A + ++ M   P+  +
Sbjct: 616 SHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIRQMPFVPDVVV 675

Query: 627 WGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEG 686
           W TLL AC++H N+++G+ A E + +++P  ++   +L N+HA +G W +  ++R SM  
Sbjct: 676 WKTLLAACKVHGNLEVGKRAAENVLKIDPSNSAAVVMLCNIHASSGHWKDFARLRSSMRR 735

Query: 687 SGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
               K PG SWIE+K+++H FL+ D       +I   L+ L  QI
Sbjct: 736 MDVGKVPGQSWIEIKDKVHVFLAEDNLHPERGKIYTMLEELMLQI 780



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 130/568 (22%), Positives = 252/568 (44%), Gaps = 83/568 (14%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           Q + +  N ++S Y K G + +AR +F+ MP +N+VSW SMI+GY    +   A  L+ +
Sbjct: 130 QPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQ 189

Query: 103 MFR----PDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGN 155
           M R    PD F++  ++   +   + + AR+L   +   E   D    NA+++ Y K   
Sbjct: 190 MLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQ 249

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
             +A  +   +  K+++SW SM++G+++ G    A   F  M  + V   N  + G    
Sbjct: 250 MADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFG---- 305

Query: 216 DDLDSAWKFFQKIPE-----------------QNVVSWVTMLSGYARNGRMLEARRLFDQ 258
               SA+    K+ E                  ++ +  ++   YA+ G +  AR +F  
Sbjct: 306 ----SAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYH 361

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLD-- 312
           +   ++VAWNA+IA +      +E++  F +M       N V+  +++        L+  
Sbjct: 362 IEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHG 421

Query: 313 -EARRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTH-DVVCWNVMIKGYAQ 369
            +    + +M +  +I    +++S Y +   +++A Q+F+ IG   D+V WN ++    Q
Sbjct: 422 IQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQ 481

Query: 370 CGRMDEAINLFRQM---------------------------------------VNKDIVT 390
             +  E + L + M                                       +N DI  
Sbjct: 482 QNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISV 541

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
            N +I  Y +   ++ A K+F+ +G   + +SW++LI G+ Q     +A ++F  M   G
Sbjct: 542 SNALINMYTKCGSLECARKMFDSIGN-PDIISWSSLIVGYAQAGCGKEAFELFRTMRGLG 600

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS-LITMYAKCGRIQNA 509
            K +  T    L+AC+H+  ++ G +++    +   ++      S ++ + A+ G +  A
Sbjct: 601 VKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVA 660

Query: 510 ELLFKDADPV-DVISWNSLIAGYAINGN 536
           E   +    V DV+ W +L+A   ++GN
Sbjct: 661 EDFIRQMPFVPDVVVWKTLLAACKVHGN 688



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 111/497 (22%), Positives = 218/497 (43%), Gaps = 101/497 (20%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           QN  ++  GK G ++EA  +F  M  KN V++ SMIS Y++ G  ++A  L+ QM +   
Sbjct: 136 QNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGH 195

Query: 78  V----SWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARE 129
           +    ++ S++      D  K AR+L   +    F  DL +   +I+ YT+  ++  A  
Sbjct: 196 IPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAIN 255

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG--------- 180
           +F  +  K D   W +M+AG++++G   EA      M S+++   N  + G         
Sbjct: 256 VFSRIIIK-DLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKL 314

Query: 181 -------------------------------YTKNGEMHLASKFFEAMEERDVVSWNLML 209
                                          Y K G +  A   F  +E+ D+V+WN ++
Sbjct: 315 LEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAII 374

Query: 210 DGYVELDDLDSAWKFFQKIPEQNVV--------------------------SWV------ 237
            G+  + +   +  FF ++    +V                          S++      
Sbjct: 375 AGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFN 434

Query: 238 -------TMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARL--- 286
                  ++LS Y++   + +A ++F+ +  + ++V+WN ++ A +Q+ Q  E  RL   
Sbjct: 435 LDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKL 494

Query: 287 -FIEMPERNPVSWTTMIDGYVRIAKLDEARR----LLDQMPYKNIAAQTAMISGYVQNKR 341
            F    + + V+ T ++    +IA  +   +    ++      +I+   A+I+ Y +   
Sbjct: 495 MFASRIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGS 554

Query: 342 MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAG 397
           ++ A ++FD IG  D++ W+ +I GYAQ G   EA  LFR M    V  + +T+  ++  
Sbjct: 555 LECARKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTA 614

Query: 398 YAQIRQMDDAVKIFEEM 414
            + I  +++ +K++  M
Sbjct: 615 CSHIGMVEEGLKLYRTM 631



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 3/148 (2%)

Query: 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHS-TLACALSACAHLAALQLGRQIHHLAIKSG 485
           I    +   H +ALK F +  +       S T    ++AC+ L +L+ GR+IH   +   
Sbjct: 69  IISLCKKNLHREALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCN 128

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
           Y  D+ + N +++MY KCG ++ A  +F      +V+SW S+I+GY+  G    AI L+ 
Sbjct: 129 YQPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYV 188

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGLVD 573
           +M+  G  PD  TF  ++ +CS  GL D
Sbjct: 189 QMLRSGHIPDHFTFGSIVKSCS--GLDD 214


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  358 bits (919), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 195/625 (31%), Positives = 340/625 (54%), Gaps = 53/625 (8%)

Query: 155 NYNEAKKL----LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLD 210
           N  +AKKL    + ++ +     +N++++ Y+K G +  A   F+ M + +  SWN ML 
Sbjct: 20  NQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLS 79

Query: 211 GYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV-----V 265
            Y +  DL +  + F  +P ++ VSW +++SGY   G ++EA + ++ M    V     +
Sbjct: 80  AYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRI 139

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW----TTMIDGYVRIAKLDEARRLLDQM 321
            ++ M+     +G ++   ++  ++ +    ++    ++++D Y ++  +  A ++ D++
Sbjct: 140 TFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEV 199

Query: 322 PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
             +N+     MI+G +++  + ++ ++F  +   D + W  MI G  Q G   EA++LFR
Sbjct: 200 QERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFR 259

Query: 382 QM---------------------------------------VNKDIVTWNTMIAGYAQIR 402
            M                                        N ++   + ++  Y + R
Sbjct: 260 DMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCR 319

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
            +  A  +F+ M  + N VSW A++ G+ QN F  +A+++F  M + G + D  TL   +
Sbjct: 320 SVRYAEAVFKRMANK-NVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVI 378

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
           S+CA+LA+L+ G Q H  A+ SG ++ + V N+LIT+Y KCG I+++  LF +    D +
Sbjct: 379 SSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEV 438

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           SW +L++GYA  G A E I LFE M+++G+ PD VTFI VLSACS  GLV+ G + FE M
Sbjct: 439 SWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESM 498

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKL 642
            + + I P  +HY CMIDL  RAGRL+EA   +  M   P++  W TLL +CR++ N ++
Sbjct: 499 LKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEI 558

Query: 643 GRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKN 702
           G+ A E L EL+PQ  + Y LLS+++A  G+W  V ++R  M   GA+K+PG SWI+ K+
Sbjct: 559 GKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIKYKS 618

Query: 703 QIHTFLSGDPKQCRTAEICNTLKTL 727
           +++ F + D     + +I   L+ L
Sbjct: 619 KVYIFSADDQSSPFSDQIYAELEKL 643



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 126/480 (26%), Positives = 241/480 (50%), Gaps = 63/480 (13%)

Query: 5   LKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND 64
           +KS+ N  ++++N    I    K G +  A  +F +M Q N+ ++N+M+SAY+K+G ++ 
Sbjct: 32  IKSLTNPETFLYNN--LINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYSKSGDLST 89

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF-----SWALMITCYT 119
            +++F  MP R+ VSWNS+I+GY+    V EA + ++ M +  +      +++ M+   +
Sbjct: 90  MQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVS 149

Query: 120 RKGELEKARELFDLLPNKEDTA---CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNS 176
            +G ++  R++   +      A     +++V  YAK+G  + A ++ D +  +N+V +N+
Sbjct: 150 SQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNT 209

Query: 177 MLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV----ELDDLD------------- 219
           M++G  ++G +  + + F  M+ERD +SW  M+ G +    E + +D             
Sbjct: 210 MITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMD 269

Query: 220 --------SAWKFFQKIPEQNVVSWVTMLSGYARN---GRML-----------EARRLFD 257
                   +A    + + E   +  + + SGY  N   G  L            A  +F 
Sbjct: 270 QYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFK 329

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN---PVSWT--TMIDGYVRIAKLD 312
           +M  +NVV+W AM+  Y Q G  EEA R+F +M +RN   P  +T  ++I     +A L+
Sbjct: 330 RMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDM-QRNGIEPDDFTLGSVISSCANLASLE 388

Query: 313 EARRLLDQMPYKN----IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
           E  +   Q         I    A+I+ Y +   ++++NQ+FD++   D V W  ++ GYA
Sbjct: 389 EGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYA 448

Query: 369 QCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
           Q G+ +E I+LF +M    +  D VT+  +++  ++   ++   + FE M K    + ++
Sbjct: 449 QFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFS 508



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 192/406 (47%), Gaps = 48/406 (11%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G+YVF  +  +    K G V  A ++F ++ ++N V YN+MI+   ++G V D+++LF  
Sbjct: 170 GAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHG 229

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKA 127
           M +R+ +SW +MI G + N    EA +LF  M +     D +++  ++T       L++ 
Sbjct: 230 MKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEG 289

Query: 128 RELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
           +E+  L+       +    +A+V  Y K  +   A+ +   M +KN+VSW +ML GY +N
Sbjct: 290 KEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQN 349

Query: 185 GEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT-- 238
           G    A + F  M+    E D  +   ++     L  L+   +F  +     ++S++T  
Sbjct: 350 GFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVS 409

Query: 239 --MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
             +++ Y + G + ++ +LFD+M  R+ V+W A+++ Y Q G+  E   LF         
Sbjct: 410 NALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLF--------- 460

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK-IGTH 355
                              R+L Q    +     A++S   +   ++   Q F+  +  H
Sbjct: 461 ------------------ERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDH 502

Query: 356 DVVC----WNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIA 396
            ++     +  MI  + + GR++EA N   +M  + D + W T+++
Sbjct: 503 GIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLS 548


>gi|297839569|ref|XP_002887666.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333507|gb|EFH63925.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 675

 Score =  358 bits (919), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 210/670 (31%), Positives = 350/670 (52%), Gaps = 53/670 (7%)

Query: 46  TVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR 105
            +  N ++  Y+++G++  AR LF++MP+RN  SWN+MI GY+++     +   FD M  
Sbjct: 42  VIVANHLLQIYSRSGKMGIARNLFDEMPERNYFSWNTMIEGYMNSGDKGTSLRFFDMMPE 101

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL-- 163
            D +SW ++I+ + + GEL  AR LFD +P K D    N+++ GY   G   EA +L   
Sbjct: 102 RDGYSWNVVISGFAKAGELSVARRLFDAMPEK-DVVTLNSLLHGYILNGYSEEALRLFKE 160

Query: 164 -----DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDL 218
                DA+    ++   + L    +  ++H  ++      E D    + +++ Y +  DL
Sbjct: 161 LKFSADAITLTTVLKACAELEALKRGKQIH--AQILIGGVECDSKMNSSLVNVYAKCGDL 218

Query: 219 DSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
             A    ++I E +  S  T++SGYA  GR+ E+RRLFD+   R V+ WN+MI+ Y+   
Sbjct: 219 RMASYMLEQIGEPDDHSLSTLISGYANCGRVNESRRLFDRKSNRCVILWNSMISGYIANN 278

Query: 279 QIEEAARLFIEMPERNPV-----SWTTMIDGYVRIAKLDEARRLLDQMP----YKNIAAQ 329
              EA  LF EM  RN       +   +I+  + +  L+  +++           +I   
Sbjct: 279 MKFEALVLFNEM--RNETWEDSRTLAAVINACIGLGFLETGKQMHCHACKFGLVDDIVVA 336

Query: 330 TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIV 389
           + ++  Y +     EA ++F ++ ++D +  N MIK Y  CGR+D+A  +F ++ NK ++
Sbjct: 337 STLLDMYSKCGSPMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDAKRVFERIENKSLI 396

Query: 390 TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
           +WN+M                                 +GF QN   ++ L+ F  M + 
Sbjct: 397 SWNSM--------------------------------TNGFSQNGCPVETLEYFSQMHKL 424

Query: 450 GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA 509
               D  +L+  +SACA +++L LG Q+   A   G  +D  V +SLI +Y KCG ++N 
Sbjct: 425 DLPTDEVSLSSVISACASISSLGLGEQVFARATIVGLDSDQIVSSSLIDLYCKCGSVENG 484

Query: 510 ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
             +F      D + WNS+I+GYA NG+  EAI LF++M + G+ P  +TF+ VL+AC++ 
Sbjct: 485 RRVFDTMVKSDEVPWNSMISGYATNGHGFEAIDLFKKMSIAGIRPTQITFMVVLTACNYC 544

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629
           GLV+ G  LFE M   +   P  EH++CM+DLL+RAG ++EA ++V+ M    +A +W +
Sbjct: 545 GLVEEGRLLFEAMKLDHGFVPDKEHFSCMVDLLARAGYVEEAIDLVEEMPFDADASMWSS 604

Query: 630 LLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689
           +L  C  +    +G+   EK+ ELEP+ +  Y  LS + A +G W+    VR  M  +  
Sbjct: 605 VLRGCVANGYKAMGKKVAEKIIELEPENSVAYVQLSAIFATSGDWESSALVRKLMRENNV 664

Query: 690 QKQPGCSWIE 699
            K PG SW +
Sbjct: 665 SKNPGSSWAD 674



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 137/502 (27%), Positives = 246/502 (49%), Gaps = 71/502 (14%)

Query: 168 SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK 227
           S  ++  N +L  Y+++G+M +A   F+ M ER+  SWN M++GY+   D  ++ +FF  
Sbjct: 39  SSIVIVANHLLQIYSRSGKMGIARNLFDEMPERNYFSWNTMIEGYMNSGDKGTSLRFFDM 98

Query: 228 IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF 287
           +PE++  SW  ++SG+A+ G +  ARRLFD MP ++VV  N+++  Y+  G  EEA RLF
Sbjct: 99  MPERDGYSWNVVISGFAKAGELSVARRLFDAMPEKDVVTLNSLLHGYILNGYSEEALRLF 158

Query: 288 IEMP-ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG----YVQNKRM 342
            E+    + ++ TT++     +  L   +++  Q+    +   + M S     Y +   +
Sbjct: 159 KELKFSADAITLTTVLKACAELEALKRGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDL 218

Query: 343 DEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIR 402
             A+ + ++IG  D    + +I GYA CGR++E+  LF +  N+ ++ WN+MI+GY    
Sbjct: 219 RMASYMLEQIGEPDDHSLSTLISGYANCGRVNESRRLFDRKSNRCVILWNSMISGYIANN 278

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
              +A+ +F EM   RN  +W                              D  TLA  +
Sbjct: 279 MKFEALVLFNEM---RNE-TWE-----------------------------DSRTLAAVI 305

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK-------------------- 502
           +AC  L  L+ G+Q+H  A K G V+D+ V ++L+ MY+K                    
Sbjct: 306 NACIGLGFLETGKQMHCHACKFGLVDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTI 365

Query: 503 -----------CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
                      CGRI +A+ +F+  +   +ISWNS+  G++ NG   E ++ F +M    
Sbjct: 366 LLNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCPVETLEYFSQMHKLD 425

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
           +  D V+   V+SAC+ +  +  G ++F   T +  ++      + +IDL  + G ++  
Sbjct: 426 LPTDEVSLSSVISACASISSLGLGEQVFARAT-IVGLDSDQIVSSSLIDLYCKCGSVENG 484

Query: 612 FEMVKGMKIKPNAGIWGTLLGA 633
             +   M +K +   W +++  
Sbjct: 485 RRVFDTM-VKSDEVPWNSMISG 505



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 139/596 (23%), Positives = 272/596 (45%), Gaps = 61/596 (10%)

Query: 9   GNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKL 68
           G   S V   N  +    +SG++  A  +F +M ++N  ++N+MI  Y  +G    + + 
Sbjct: 36  GFISSIVIVANHLLQIYSRSGKMGIARNLFDEMPERNYFSWNTMIEGYMNSGDKGTSLRF 95

Query: 69  FEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAR 128
           F+ MP+R+  SWN +I+G+    ++  AR LFD M   D+ +   ++  Y   G  E+A 
Sbjct: 96  FDMMPERDGYSWNVVISGFAKAGELSVARRLFDAMPEKDVVTLNSLLHGYILNGYSEEAL 155

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKI-----GNYNEAKKLLDAMPSKNIVSWNSMLSGYTK 183
            LF  L    D      ++   A++     G    A+ L+  +   + ++ +S+++ Y K
Sbjct: 156 RLFKELKFSADAITLTTVLKACAELEALKRGKQIHAQILIGGVECDSKMN-SSLVNVYAK 214

Query: 184 NGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGY 243
            G++ +AS   E + E D  S + ++ GY     ++ + + F +   + V+ W +M+SGY
Sbjct: 215 CGDLRMASYMLEQIGEPDDHSLSTLISGYANCGRVNESRRLFDRKSNRCVILWNSMISGY 274

Query: 244 ARNGRMLEARRLFDQMPIRNVVAWN------AMIAAYVQRGQIEEAARLFIEMPE----R 293
             N    EA  LF++M  RN   W       A+I A +  G +E   ++     +     
Sbjct: 275 IANNMKFEALVLFNEM--RNET-WEDSRTLAAVINACIGLGFLETGKQMHCHACKFGLVD 331

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
           + V  +T++D Y +     EA +L  ++   +     +MI  Y    R+D+A ++F++I 
Sbjct: 332 DIVVASTLLDMYSKCGSPMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDAKRVFERIE 391

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQM------------------------------ 383
              ++ WN M  G++Q G   E +  F QM                              
Sbjct: 392 NKSLISWNSMTNGFSQNGCPVETLEYFSQMHKLDLPTDEVSLSSVISACASISSLGLGEQ 451

Query: 384 ---------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
                    ++ D +  +++I  Y +   +++  ++F+ M K  + V WN++ISG+  N 
Sbjct: 452 VFARATIVGLDSDQIVSSSLIDLYCKCGSVENGRRVFDTMVK-SDEVPWNSMISGYATNG 510

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHH-LAIKSGYVNDLFVG 493
              +A+ +F  M+  G +    T    L+AC +   ++ GR +   + +  G+V D    
Sbjct: 511 HGFEAIDLFKKMSIAGIRPTQITFMVVLTACNYCGLVEEGRLLFEAMKLDHGFVPDKEHF 570

Query: 494 NSLITMYAKCGRIQNA-ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           + ++ + A+ G ++ A +L+ +     D   W+S++ G   NG      K+ E+++
Sbjct: 571 SCMVDLLARAGYVEEAIDLVEEMPFDADASMWSSVLRGCVANGYKAMGKKVAEKII 626



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 93/186 (50%), Gaps = 14/186 (7%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDL-FVGNSLITMYAKCGRIQNAELLFKDADPVD 520
           L +C++     L RQ + L +K G+++ +  V N L+ +Y++ G++  A  LF +    +
Sbjct: 13  LQSCSNRNRETLWRQTNGLFLKKGFISSIVIVANHLLQIYSRSGKMGIARNLFDEMPERN 72

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE 580
             SWN++I GY  +G+   +++ F+ M       D  ++  V+S  +  G +    +LF+
Sbjct: 73  YFSWNTMIEGYMNSGDKGTSLRFFDMM----PERDGYSWNVVISGFAKAGELSVARRLFD 128

Query: 581 CMTE--VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQ 638
            M E  V  +  L+  Y     +L+  G  +EA  + K +K   +A    T+L AC   +
Sbjct: 129 AMPEKDVVTLNSLLHGY-----ILN--GYSEEALRLFKELKFSADAITLTTVLKACAELE 181

Query: 639 NIKLGR 644
            +K G+
Sbjct: 182 ALKRGK 187


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  358 bits (919), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 198/589 (33%), Positives = 324/589 (55%), Gaps = 25/589 (4%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N ++  Y+K G   E  +L + M  ++++SWN+M+S Y   G    A   F+ M    V+
Sbjct: 172 NNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVL 231

Query: 204 SWNLMLDGYV----ELDDLDSAWKFFQKIPEQNVVSWV------TMLSGYARNGRMLEAR 253
              + +   V    +L DL+   +    I +  +  W+       ++  Y++ G+M EA 
Sbjct: 232 PDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKL--WIRGSLLNCLVDMYSKCGKMDEAH 289

Query: 254 RLF---DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAK 310
            L    D+  + +VV W  +++ YV+  +I++A +LF +M ER+ VSWTTM+ GYV+   
Sbjct: 290 GLLSRCDESEV-DVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGY 348

Query: 311 LDEARRLLDQMPYKNI----AAQTAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNV 362
             E+  L  QM ++N+     A   ++S  V  +  D    +   I T+    D    N 
Sbjct: 349 YCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNA 408

Query: 363 MIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
           ++  YA+CG++DEA+  F Q+  K   +WN+M+ G+ +   +D A   F ++   ++ VS
Sbjct: 409 LLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKI-PEKDIVS 467

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482
           WN +++ +++++   ++ +IF  M     K D +TL   LS+CA + AL  G  ++    
Sbjct: 468 WNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIE 527

Query: 483 KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIK 542
           K+    D  +G +LI MY KCG ++ A  +F      +V  W +++A YA+ G A EAI 
Sbjct: 528 KNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAID 587

Query: 543 LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLL 602
           L+ EM   GV PD VTFI +L+ACSH GLVD G K F  +   Y I P + HY CM+DLL
Sbjct: 588 LYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLL 647

Query: 603 SRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYA 662
            R G L+E  + ++ M I+P+  IW +L+ ACR H N++L   A ++L E++P     + 
Sbjct: 648 GRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHV 707

Query: 663 LLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD 711
           LLSN++A+AGRWD+V KVR  +  +G  KQPG + IE    +H F++ +
Sbjct: 708 LLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMIEQNGVVHEFVASN 756



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 140/569 (24%), Positives = 265/569 (46%), Gaps = 102/569 (17%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
           +N    N+++  Y+K G++ +  +LFE+M  R+++SWN+MI+ Y+     +EA +LFD+M
Sbjct: 166 RNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEM 225

Query: 104 F----RPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACW------NAMVAGYAKI 153
                 PD  +   +++   +  +LE  + L   +    D   W      N +V  Y+K 
Sbjct: 226 LVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIV---DNKLWIRGSLLNCLVDMYSKC 282

Query: 154 GNYNEAKKLLDAMPSK--NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
           G  +EA  LL        ++V W +++SGY K+ ++  A + F+ M ER +VSW  M+ G
Sbjct: 283 GKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSG 342

Query: 212 YVELDDLDSAWKFFQKIPEQNV----VSWVTMLSG------------------------- 242
           YV+      + + FQ++  +NV    V+ VT+LS                          
Sbjct: 343 YVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVD 402

Query: 243 ----------YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE 292
                     YA+ G++ EA R F+Q+P ++  +WN+M+  + + G +++A   F ++PE
Sbjct: 403 GFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPE 462

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA-QTAMISGYVQNKRMDEANQIF-- 349
           ++ VSW TM++ YV+    +E+  +  +M   N+   +T +IS      ++   N     
Sbjct: 463 KDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWV 522

Query: 350 ------DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQ 403
                 ++IG  D +    +I  Y +CG ++ A  +F Q++ K++  W  M+A YA   Q
Sbjct: 523 NVYIEKNEIGI-DAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQ 581

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS 463
             +A+ ++ EM +R                                G K DH T    L+
Sbjct: 582 ALEAIDLYLEMEER--------------------------------GVKPDHVTFIALLA 609

Query: 464 ACAHLAALQLGRQIHHLAIKSGY--VNDLFVGNSLITMYAKCGRIQNAELLFKDADPV-- 519
           AC+H   +  G +  +  ++S Y  +  +     ++ +  + G ++   + F +  P+  
Sbjct: 610 ACSHGGLVDEGYKYFN-KLRSFYNIIPTIHHYGCMVDLLGRVGHLEET-VKFIERMPIEP 667

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMV 548
           DV  W+SL+     + N   A + F++++
Sbjct: 668 DVSIWSSLMRACRSHHNVELAEQAFKQLI 696



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/425 (24%), Positives = 216/425 (50%), Gaps = 31/425 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQM--SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRN 76
           N  +    K G+++EA  + S+   S+ + V + +++S Y K+ +++ AR+LF++M +R+
Sbjct: 273 NCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERS 332

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFD 132
           LVSW +M++GY+      E+ ELF +M      PD  +   +++      + +  R +  
Sbjct: 333 LVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHA 392

Query: 133 LLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
            +       D    NA++  YAK G  +EA +  + +P K+  SWNSML G+ ++G +  
Sbjct: 393 FIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDK 452

Query: 190 ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYAR 245
           A  FF  + E+D+VSWN M++ YV+ D  + +++ F K+   NV     + +++LS  A+
Sbjct: 453 ARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAK 512

Query: 246 NGRMLEARRLFDQMPI-RNVVAWNAMIAA-----YVQRGQIEEAARLFIEMPERNPVSWT 299
            G +     ++  + I +N +  +AM+       Y + G +E A  +F ++ E+N   WT
Sbjct: 513 VGAL--NHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWT 570

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIGT- 354
            M+  Y    +  EA  L  +M  + +        A+++       +DE  + F+K+ + 
Sbjct: 571 AMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSF 630

Query: 355 HDVVC----WNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAGYAQIRQMDDAVK 409
           ++++     +  M+    + G ++E +    +M +  D+  W++++        ++ A +
Sbjct: 631 YNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQ 690

Query: 410 IFEEM 414
            F+++
Sbjct: 691 AFKQL 695



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 147/299 (49%), Gaps = 17/299 (5%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F  N  +    K G+++EA++ F Q+  K+  ++NSM+  + ++G V+ AR  F ++P++
Sbjct: 404 FLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEK 463

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELF 131
           ++VSWN+M+  Y+ +D   E+ E+F KM     +PD  +   +++   + G L     + 
Sbjct: 464 DIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVN 523

Query: 132 DLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
             +   E   D     A++  Y K G    A ++   +  KN+  W +M++ Y   G+  
Sbjct: 524 VYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQAL 583

Query: 189 LASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPE-QNVVSWV----TM 239
            A   +  MEER    D V++  +L        +D  +K+F K+    N++  +     M
Sbjct: 584 EAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCM 643

Query: 240 LSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
           +    R G + E  +  ++MPI  +V  W++++ A      +E A + F ++ E +P +
Sbjct: 644 VDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTN 702



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 154/306 (50%), Gaps = 11/306 (3%)

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIV----TWNTMIAGYAQIRQMDDAVK 409
           +H V+  + +I     C  + E   +   ++  +++      + ++A    +  +D A +
Sbjct: 29  SHSVLRPHWIIDLLKSCSNIREFSPIHAHLITANLIHDPEITSQVLAFLLSVNNLDCAHQ 88

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           I         ++ WN L+   L+     + L+ +  M  +G   D ST    + AC    
Sbjct: 89  ILS-YSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNF 147

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
            ++LG ++H   +K G+  +  + N+L+ +Y+KCG+++    LF+     DVISWN++I+
Sbjct: 148 DVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMIS 207

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG--LKLFECMTEVYA 587
            Y + G   EA+ LF+EM++ GV PD +T + ++S C+ +  ++ G  L L+    +++ 
Sbjct: 208 CYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWI 267

Query: 588 IEPLVEHYACMIDLLSRAGRLDEAFEMV-KGMKIKPNAGIWGTLLGACRMHQNIKLGRIA 646
              L+    C++D+ S+ G++DEA  ++ +  + + +  +W TL+        I   R  
Sbjct: 268 RGSLLN---CLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQL 324

Query: 647 VEKLSE 652
            +K++E
Sbjct: 325 FDKMNE 330


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  358 bits (919), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 227/784 (28%), Positives = 376/784 (47%), Gaps = 100/784 (12%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
            T   N ++  YA+ G    AR +F+ MP R+ VSWN+M+  Y H      A  LF  M 
Sbjct: 38  TTFVSNCLLQMYARCGGAAHARGVFDVMPHRDTVSWNTMLTAYAHAGDTGAAASLFGAMP 97

Query: 105 RPDLFSWALMITCYTRKG--------ELEKARE-----------LFDLLPNKEDTA---- 141
            PD+ SW  +++ Y ++G         +E AR            L       ED A    
Sbjct: 98  DPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQ 157

Query: 142 ---------------CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
                            +A+V  Y K  +  +A +    M  +N VSW + ++G  +N +
Sbjct: 158 IHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQ 217

Query: 187 MHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFF-----QKIPEQNVVSWV 237
                + F  M+   +     ++  +      +  L +A +        K     VV   
Sbjct: 218 YTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTARQLHAHAIKNKFSADRVVG-T 276

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
            ++  YA+   +++ARR F  +P   V A NAM+   V+ G   EA +LF +   R+ + 
Sbjct: 277 AIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGLGAEALQLF-QFMTRSGIG 335

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT----------AMISGYVQNKRMDEANQ 347
           +  +    V  +   E +  L  +    +A ++          A++  Y + K + EA  
Sbjct: 336 FDVVSLSGV-FSACAEVKGYLQGLQVHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYL 394

Query: 348 IFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK--------------------- 386
           +F ++   D V WN +I    Q    ++ I    +M+                       
Sbjct: 395 VFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQS 454

Query: 387 ------------------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
                             D    +T++  Y +   + +A K+ + +G +   VSWN++IS
Sbjct: 455 LEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLHDRIGGQ-ELVSWNSIIS 513

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
           GF  N+   +A K F  M   G K DH T A  L  CA+LA ++LG+QIH   IK   + 
Sbjct: 514 GFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLG 573

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           D ++ ++L+ MYAKCG + ++ L+F+ A  +D +SWN++I GYA++G   EA+++FE M 
Sbjct: 574 DEYISSTLVDMYAKCGNMPDSLLMFEKAQKLDFVSWNAMICGYALHGQGFEALEMFERMQ 633

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
              V P+  TF+ VL ACSHVGL+D G + F  MT  Y +EP +EH+ACM+D+L R+   
Sbjct: 634 QANVVPNHATFVAVLRACSHVGLLDDGCRYFYLMTSRYKLEPQLEHFACMVDILGRSKGP 693

Query: 609 DEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMH 668
            EA + ++ M ++ +A IW TLL  C++ Q++++   A   +  L+P  +S Y LLSN++
Sbjct: 694 QEALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAETAASNVLRLDPDDSSVYILLSNVY 753

Query: 669 AEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLA 728
           AE+G+W +V + R  M     +K+PGCSWIEV++++H FL+GD    R+ E+   L  L 
Sbjct: 754 AESGKWVDVSRTRRLMRQGRLKKEPGCSWIEVQSEMHGFLAGDKVHPRSREVYEMLNNLI 813

Query: 729 AQIR 732
            +++
Sbjct: 814 VEMK 817



 Score =  226 bits (577), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 179/637 (28%), Positives = 283/637 (44%), Gaps = 95/637 (14%)

Query: 88  LHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMV 147
           L   +   AR L    F P  F    ++  Y R G    AR +FD++P++ DT  WN M+
Sbjct: 20  LATGQAAHARMLVSG-FMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHR-DTVSWNTML 77

Query: 148 AGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVV 203
             YA  G+   A  L  AMP  ++VSWN++LSGY + G    +      M  R    D  
Sbjct: 78  TAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRT 137

Query: 204 SWNLMLDGYVELDDLDSAWKF----FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM 259
           +  ++L     L+DL    +      +   E +V +   ++  Y +   + +A R F  M
Sbjct: 138 TLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGM 197

Query: 260 PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP---------------------------- 291
             RN V+W A IA  VQ  Q      LF++M                             
Sbjct: 198 GERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTAR 257

Query: 292 -----------ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340
                        + V  T ++D Y +   L +ARR    +P   + A  AM+ G V+  
Sbjct: 258 QLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTG 317

Query: 341 RMDEANQI----------FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
              EA Q+          FD +    V      +KGY Q G     + + +   + D+  
Sbjct: 318 LGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQ-GLQVHCLAI-KSGFDVDVCV 375

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
            N ++  Y + + + +A  +F+EM ++R++VSWNA+I+   QNE + D +     M + G
Sbjct: 376 RNAILDLYGKCKALVEAYLVFQEM-EQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYG 434

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
            + D  T    L ACA L +L+ G  +H  AIKSG   D FV ++++ MY KCG I  A+
Sbjct: 435 MEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQ 494

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
            L       +++SWNS+I+G+++N  + EA K F EM+  GV PD  T+  VL  C+++ 
Sbjct: 495 KLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLA 554

Query: 571 LVDGGLKLF------ECMTEVYAIEPLVEHYA-C--MID---LLSRAGRLD--------- 609
            ++ G ++       E + + Y    LV+ YA C  M D   +  +A +LD         
Sbjct: 555 TIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKAQKLDFVSWNAMIC 614

Query: 610 ---------EAFEMVKGMK---IKPNAGIWGTLLGAC 634
                    EA EM + M+   + PN   +  +L AC
Sbjct: 615 GYALHGQGFEALEMFERMQQANVVPNHATFVAVLRAC 651



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 95/220 (43%), Gaps = 47/220 (21%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF-----KDA 516
           L A A  +AL  G+  H   + SG++   FV N L+ MYA+CG   +A  +F     +D 
Sbjct: 11  LCAGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHRDT 70

Query: 517 ---------------------------DPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549
                                      DP DV+SWN+L++GY   G   +++ L  EM  
Sbjct: 71  VSWNTMLTAYAHAGDTGAAASLFGAMPDP-DVVSWNALLSGYCQRGMFRDSVGLSVEMAR 129

Query: 550 EGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI------EPLVEHYACMIDLLS 603
            GVAPD  T   +L AC       GGL+      +++A+      E  V   + ++D+  
Sbjct: 130 RGVAPDRTTLAVLLKAC-------GGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYG 182

Query: 604 RAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLG 643
           +   L++A     GM  + N+  WG  +  C  ++    G
Sbjct: 183 KCRSLEDALRFFHGMG-ERNSVSWGAAIAGCVQNEQYTRG 221


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  358 bits (918), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 226/773 (29%), Positives = 385/773 (49%), Gaps = 113/773 (14%)

Query: 16   FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTV---TYNSMISAYAKNGRVNDARKLFEQM 72
             ++N KI +  + G +  A+++  +MSQK+ +    Y+S++   A++  + + + +    
Sbjct: 419  LDENTKICKFCEVGDLRNAVELL-RMSQKSELDLNAYSSILQLCAEHKCLQEGKMV---- 473

Query: 73   PQRNLVSWNSM-IAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
               +++S N + I G L                       A ++  Y   G L + R +F
Sbjct: 474  --HSVISSNGIPIEGVL----------------------GAKLVFMYVSCGALREGRRIF 509

Query: 132  DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP----SKNIVSWNSMLSGYTKNGEM 187
            D + +      WN M++ YAKIG+Y E+  L   M     + N  +++ +L  +   G +
Sbjct: 510  DHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRV 569

Query: 188  HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
                +    + +    S+N +++                           ++++ Y ++G
Sbjct: 570  GECKRIHGCVYKLGFGSYNTVVN---------------------------SLIATYFKSG 602

Query: 248  RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM-PERNPVSWTTMIDGYV 306
             +  A +LFD++  R+VV+WN+MI+  V  G    A   F++M   R  V   T+++   
Sbjct: 603  EVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVA 662

Query: 307  ---RIAKLDEARRLLDQ----MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
                +  L   R L  Q       + +     ++  Y +   +++A Q F+K+G   VV 
Sbjct: 663  ACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVS 722

Query: 360  WNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTW------------------------ 391
            W  +I  Y + G  D+AI LF +M    V+ D+ +                         
Sbjct: 723  WTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIR 782

Query: 392  -----------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
                       N ++  YA+   M++A  +F ++   ++ VSWN +I G+ +N    +AL
Sbjct: 783  KNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQI-PVKDIVSWNTMIGGYSKNSLPNEAL 841

Query: 441  KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500
            K+F  M +E  + D  T+AC L AC  LAAL++GR IH   +++GY ++L V N+LI MY
Sbjct: 842  KLFAEMQKE-SRPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMY 900

Query: 501  AKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
             KCG + +A LLF      D+I+W  +I+G  ++G   EAI  F++M + G+ PD +TF 
Sbjct: 901  VKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFT 960

Query: 561  GVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKI 620
             +L ACSH GL++ G   F  M     +EP +EHYACM+DLL+R G L +A+ +++ M I
Sbjct: 961  SILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPI 1020

Query: 621  KPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKV 680
            KP+A IWG LL  CR+H +++L     E + ELEP     Y LL+N++AEA +W+EV+K+
Sbjct: 1021 KPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKL 1080

Query: 681  RVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
            R  +   G +K PGCSWIEV+ +  TF+S D    +   I + L  L  +++N
Sbjct: 1081 RERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNNLRIKMKN 1133



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 122/448 (27%), Positives = 203/448 (45%), Gaps = 51/448 (11%)

Query: 14  YVFNQNKKITQLGKS-------------GRVEEAIKIFSQMSQKNTVTYN----SMISAY 56
           Y+F + +K+   G S             GRV E  +I   + +    +YN    S+I+ Y
Sbjct: 539 YLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATY 598

Query: 57  AKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWA 112
            K+G V+ A KLF+++  R++VSWNSMI+G + N     A E F +M       DL +  
Sbjct: 599 FKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLV 658

Query: 113 LMITCYTRKGELEKARELFDLLPNKEDTACW-------NAMVAGYAKIGNYNEAKKLLDA 165
             +      G L   R L      +   AC+       N ++  Y+K GN N+A +  + 
Sbjct: 659 NSVAACANVGSLSLGRALH----GQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEK 714

Query: 166 MPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSA 221
           M  K +VSW S+++ Y + G    A + F  ME +    DV S   +L      + LD  
Sbjct: 715 MGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKG 774

Query: 222 WKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR 277
                 I + N+   +     ++  YA+ G M EA  +F Q+P++++V+WN MI  Y + 
Sbjct: 775 RDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKN 834

Query: 278 GQIEEAARLFIEM-PERNP--VSWTTMIDGYVRIAKLDEARR----LLDQMPYKNIAAQT 330
               EA +LF EM  E  P  ++   ++     +A L+  R     +L       +    
Sbjct: 835 SLPNEALKLFAEMQKESRPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVAN 894

Query: 331 AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNK 386
           A+I  YV+   +  A  +FD I   D++ W VMI G    G  +EAI  F++M    +  
Sbjct: 895 ALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKP 954

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           D +T+ +++   +    +++    F  M
Sbjct: 955 DEITFTSILYACSHSGLLNEGWGFFNSM 982



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 102/437 (23%), Positives = 165/437 (37%), Gaps = 124/437 (28%)

Query: 12   GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
            GSY    N  I    KSG V+ A K+F ++  ++ V++NSMIS    NG  + A + F Q
Sbjct: 585  GSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQ 644

Query: 72   MP---------------------------------------QRNLVSWNSMIAGYLHNDK 92
            M                                         R ++  N+++  Y     
Sbjct: 645  MLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGN 704

Query: 93   VKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK-------------ED 139
            + +A + F+KM +  + SW  +I  Y R+G  + A  LF  + +K               
Sbjct: 705  LNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHA 764

Query: 140  TACWNAMVAG-------------------------YAKIGNYNEAKKLLDAMPSKNIVSW 174
             AC N++  G                         YAK G+  EA  +   +P K+IVSW
Sbjct: 765  CACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSW 824

Query: 175  NSMLSGYTKNGEMHLASKFFEAMEER---------------------------------- 200
            N+M+ GY+KN   + A K F  M++                                   
Sbjct: 825  NTMIGGYSKNSLPNEALKLFAEMQKESRPDGITMACLLPACGSLAALEIGRGIHGCILRN 884

Query: 201  ----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF 256
                ++   N ++D YV+   L  A   F  IPE+++++W  M+SG   +G   EA   F
Sbjct: 885  GYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATF 944

Query: 257  DQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMP-----ERNPVSWTTMIDGYVR 307
             +M I  +    + + +++ A    G + E    F  M      E     +  M+D   R
Sbjct: 945  QKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLAR 1004

Query: 308  IAKLDEARRLLDQMPYK 324
               L +A  L++ MP K
Sbjct: 1005 TGNLSKAYNLIETMPIK 1021



 Score = 56.2 bits (134), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 108/260 (41%), Gaps = 41/260 (15%)

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKI--FEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
           D+   +T +  +A+   +D+  KI  F E+G  RN V                      +
Sbjct: 405 DVPRSSTRVGAFAK---LDENTKICKFCEVGDLRNAVE---------------------L 440

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG 504
           L   +  + D +  +  L  CA    LQ G+ +H +   +G   +  +G  L+ MY  CG
Sbjct: 441 LRMSQKSELDLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCG 500

Query: 505 RIQNAELLFKDA-DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
            ++    +F        V  WN +++ YA  G+  E+I LF++M   G+  +  TF  +L
Sbjct: 501 ALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCIL 560

Query: 564 SACSHVGLVDGGLKLFECMTEV------YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKG 617
              + +G V    ++  C+ ++        +  L+  Y        ++G +D A ++   
Sbjct: 561 KCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYF-------KSGEVDSAHKLFDE 613

Query: 618 MKIKPNAGIWGTLLGACRMH 637
           +  +     W +++  C M+
Sbjct: 614 LGDRDVVS-WNSMISGCVMN 632


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  358 bits (918), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 200/573 (34%), Positives = 341/573 (59%), Gaps = 34/573 (5%)

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
           H A +F    + R + +  ++   Y    +L +   F + + + NV SW ++++  AR+G
Sbjct: 74  HTAFQFSGFSKRRSICAGAVLRRRYSNNPNLTTL--FNKYVDKTNVFSWNSVIAELARSG 131

Query: 248 RMLEARRLFDQM------PIRN-----VVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
             +EA R F  M      P R+     + + +A++  +  R Q  + A +F   P+    
Sbjct: 132 DSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGR-QAHQQALIFGFEPDLFVS 190

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHD 356
           S   ++D Y +  +L +AR L D++ ++NI + T+MI+GYVQN     A  +F +    +
Sbjct: 191 S--ALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEE 248

Query: 357 V-------VCWN--VMIKGYAQCGRMDE-AIN------LFRQMVNKDIVTWNTMIAGYAQ 400
                   VC +   M+   + C R+ E +I       L ++    D+   NT++  YA+
Sbjct: 249 SGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAK 308

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK-KADHSTLA 459
             ++  + ++F+ M +R + +SWN++I+ + QN    ++++IF  M ++G+   +  TL+
Sbjct: 309 CGELGVSRRVFDGMAER-DVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLS 367

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
             L ACAH  + +LG+ IH   IK G  +++FVG S+I MY KCG+++ A   F      
Sbjct: 368 AVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREK 427

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
           +V SW++++AGY ++G+A EA+++F EM M GV P+ +TF+ VL+ACSH GL++ G   F
Sbjct: 428 NVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWF 487

Query: 580 ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
           + M+  + +EP VEHY CM+DLL RAG L EAF+++KGMK++P+  +WG LLGACRMH+N
Sbjct: 488 KAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKN 547

Query: 640 IKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
           + LG I+  KL EL+P+    Y LLSN++A+AGRW++VE++R+ M+ SG  K PG S ++
Sbjct: 548 VDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVD 607

Query: 700 VKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +K ++H FL GD +  +  +I   L+ L+ +++
Sbjct: 608 IKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQ 640



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 108/471 (22%), Positives = 192/471 (40%), Gaps = 100/471 (21%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQ----KNTVTY--------------------- 49
           VF+ N  I +L +SG   EA++ FS M +     N  T+                     
Sbjct: 117 VFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQ 176

Query: 50  --------------NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKE 95
                         ++++  Y+K G + DAR LF+++  RN+VSW SMI GY+ ND    
Sbjct: 177 QALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHR 236

Query: 96  ARELFDKMFRP------------DLFSWALMITCYTRKGELEKARELFDLLPNK---EDT 140
           A  LF +                D  +   +++  +R  E      +   L  +    D 
Sbjct: 237 ALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDL 296

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER 200
              N ++  YAK G    ++++ D M  ++++SWNS+++ Y +NG    + + F  M + 
Sbjct: 297 GVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKD 356

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIP---------EQNVVSWVTMLSGYARNGRMLE 251
             +++N +    V L    S  +   K           E NV    +++  Y + G++  
Sbjct: 357 GEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEM 416

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVR 307
           AR+ FD+M  +NV +W+AM+A Y   G  +EA  +F EM     + N +++ +++     
Sbjct: 417 ARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSH 476

Query: 308 IAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD-KIGTHDVVCWNVMIKG 366
              L+E       M ++                        FD + G     C   M+  
Sbjct: 477 AGLLEEGWHWFKAMSHE------------------------FDVEPGVEHYGC---MVDL 509

Query: 367 YAQCGRMDEAINLFRQM-VNKDIVTWNTMIAGYAQIRQMD----DAVKIFE 412
             + G + EA +L + M +  D V W  ++      + +D     A K+FE
Sbjct: 510 LGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFE 560



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/384 (21%), Positives = 162/384 (42%), Gaps = 99/384 (25%)

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------PSKN-----IVSWNSML 178
           LF+   +K +   WN+++A  A+ G+  EA +   +M      P+++     I S +++L
Sbjct: 107 LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 166

Query: 179 ---SG-------------------------YTKNGEMHLASKFFEAMEERDVVSWNLMLD 210
              SG                         Y+K GE+  A   F+ +  R++VSW  M+ 
Sbjct: 167 DLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMIT 226

Query: 211 GYVELDDLDSAWKFFQ------------------------------KIPEQNVVSWV--- 237
           GYV+ DD   A   F+                              ++ E+++   V   
Sbjct: 227 GYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGF 286

Query: 238 --------------TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEA 283
                         T++  YA+ G +  +RR+FD M  R+V++WN++IA Y Q G   E+
Sbjct: 287 LIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTES 346

Query: 284 ARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY---------KNIAAQTAMIS 334
             +F  M +   +++  +    V +A      + L +  +          N+   T++I 
Sbjct: 347 MEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIID 406

Query: 335 GYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVT 390
            Y +  +++ A + FD++   +V  W+ M+ GY   G   EA+ +F +M    V  + +T
Sbjct: 407 MYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYIT 466

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEM 414
           + +++A  +    +++    F+ M
Sbjct: 467 FVSVLAACSHAGLLEEGWHWFKAM 490



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 146/320 (45%), Gaps = 50/320 (15%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ--- 74
           +N  +    K G +  + ++F  M++++ +++NS+I+ YA+NG   ++ ++F +M +   
Sbjct: 299 ENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGE 358

Query: 75  --RNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAR 128
              N V+ ++++    H+   +  + + D++ +     ++F    +I  Y + G++E AR
Sbjct: 359 INYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMAR 418

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM----PSKNIVSWNSMLSGYTKN 184
           + FD +  K +   W+AMVAGY   G+  EA ++   M       N +++ S+L+  +  
Sbjct: 419 KAFDRMREK-NVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHA 477

Query: 185 GEMHLASKFFEAM-EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGY 243
           G +     +F+AM  E DV                           E  V  +  M+   
Sbjct: 478 GLLEEGWHWFKAMSHEFDV---------------------------EPGVEHYGCMVDLL 510

Query: 244 ARNGRMLEARRLFDQMPIR-NVVAWNAMIAAY-----VQRGQIEEAARLFIEMPERNPVS 297
            R G + EA  L   M +R + V W A++ A      V  G+I  +AR   E+  +N   
Sbjct: 511 GRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEI--SARKLFELDPKNCGY 568

Query: 298 WTTMIDGYVRIAKLDEARRL 317
           +  + + Y    + ++  R+
Sbjct: 569 YVLLSNIYADAGRWEDVERM 588



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 13/168 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S VF     I    K G+VE A K F +M +KN  ++++M++ Y  +G   +A ++F +M
Sbjct: 396 SNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEM 455

Query: 73  ----PQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGE 123
                + N +++ S++A   H   ++E    F  M       P +  +  M+    R G 
Sbjct: 456 NMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGY 515

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYN----EAKKLLDAMP 167
           L++A +L   +  + D   W A++       N +     A+KL +  P
Sbjct: 516 LKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDP 563


>gi|357518009|ref|XP_003629293.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355523315|gb|AET03769.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 672

 Score =  358 bits (918), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 214/670 (31%), Positives = 340/670 (50%), Gaps = 69/670 (10%)

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDL 133
             ++++ N ++  Y     + +A +LFD+M +P+ FSW  +I  +   G   K+ ELF  
Sbjct: 27  HSSVITTNRLLQLYSRRGSLHDASKLFDEMPQPNPFSWNTLIEAHINLGHRNKSLELFHA 86

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG-------- 185
           +P+K   + WN +V+  +K G+  +A+ L +AMP KN + WNSM+ GY+++G        
Sbjct: 87  MPHKTHYS-WNLIVSTLSKSGDLQQAQALFNAMPMKNPLVWNSMIHGYSRHGYPRNSLLL 145

Query: 186 --EMHL---------------------------------ASKFFEAME-ERDVVSWNLML 209
             EM+L                                 A  F +  E E+D V  + ++
Sbjct: 146 FKEMNLDPLETVHRDAFVLSTVFGACADLFALDCGKQVHARVFIDGFEFEQDKVLCSSIV 205

Query: 210 DGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNA 269
           + Y +  DLDSA +    + E +  S   ++SGYA  GRM +AR++FD       V WN+
Sbjct: 206 NFYGKCGDLDSAARVVGFVKEVDDFSLSALVSGYANAGRMSDARKVFDNKVDPCSVLWNS 265

Query: 270 MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
           +I+ YV  G+  EA  LF +M  RN V W                    D     NI + 
Sbjct: 266 IISGYVSNGEEMEALALFNKM-RRNGV-WG-------------------DFSAVANILSI 304

Query: 330 TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIV 389
           ++ +      K+M +    F    THD+V  + ++  Y++C    ++  LF ++   D +
Sbjct: 305 SSSLLNVELVKQMHD--HAFKIGATHDIVVASTLLDAYSKCQHPHDSCKLFHELKVYDAI 362

Query: 390 TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
             NTMI  Y    +++DA ++F  M   +  +SWN+++ G  QN    +AL  F +M + 
Sbjct: 363 LLNTMITVYCNCGRVEDAKEVFNSM-PNKTLISWNSILVGLTQNACPSEALDTFSMMNKL 421

Query: 450 GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA 509
             K D  + A  +SACA  ++L+LG Q+   AI  G  +D  +  SL+  Y KCG ++  
Sbjct: 422 DVKMDKFSFASVISACAIKSSLELGEQLFGKAITLGLESDQIICTSLVDFYCKCGLVEMG 481

Query: 510 ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
             +F      D +SWN+++ GYA NG   EA+ LF EM   GV P  +TF G+LSAC H 
Sbjct: 482 RKVFDGMIKTDEVSWNTMLMGYATNGYGIEALTLFNEMGYSGVRPSAITFTGILSACDHC 541

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629
           GLV+ G  LF  M   Y I P +EHY+CM+DL +R G   EA  +++ M  + +A +W +
Sbjct: 542 GLVEEGRDLFRTMKHDYDINPGIEHYSCMVDLFARVGCFGEAMYLIEEMPFQADANMWLS 601

Query: 630 LLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689
           +L  C  H N  +G++A EK+ +L+P  +  Y  LSN+ A +  W+   +VR  M     
Sbjct: 602 VLRGCVSHGNKTIGKMAAEKIIQLDPGNSGAYIQLSNILATSEDWEGSAEVRELMRNKNV 661

Query: 690 QKQPGCSWIE 699
           QK PGCSW++
Sbjct: 662 QKIPGCSWMD 671



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 139/633 (21%), Positives = 251/633 (39%), Gaps = 130/633 (20%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
           +  SL   GN  S V   N+ +    + G + +A K+F +M Q N  ++N++I A+   G
Sbjct: 16  LHLSLLKTGNLHSSVITTNRLLQLYSRRGSLHDASKLFDEMPQPNPFSWNTLIEAHINLG 75

Query: 61  RVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTR 120
             N + +LF  MP +   SWN +++    +  +++A+ LF+ M   +   W  MI  Y+R
Sbjct: 76  HRNKSLELFHAMPHKTHYSWNLIVSTLSKSGDLQQAQALFNAMPMKNPLVWNSMIHGYSR 135

Query: 121 KG---------------ELE----------------------------KARELFDLLPNK 137
            G                LE                             AR   D    +
Sbjct: 136 HGYPRNSLLLFKEMNLDPLETVHRDAFVLSTVFGACADLFALDCGKQVHARVFIDGFEFE 195

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
           +D    +++V  Y K G+ + A +++  +   +  S ++++SGY   G M  A K F+  
Sbjct: 196 QDKVLCSSIVNFYGKCGDLDSAARVVGFVKEVDDFSLSALVSGYANAGRMSDARKVFDNK 255

Query: 198 EERDVVSWNLMLDGYV----ELDDL--------DSAWKFFQKIPE--------------- 230
            +   V WN ++ GYV    E++ L        +  W  F  +                 
Sbjct: 256 VDPCSVLWNSIISGYVSNGEEMEALALFNKMRRNGVWGDFSAVANILSISSSLLNVELVK 315

Query: 231 ------------QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
                        ++V   T+L  Y++     ++ +LF ++ + + +  N MI  Y   G
Sbjct: 316 QMHDHAFKIGATHDIVVASTLLDAYSKCQHPHDSCKLFHELKVYDAILLNTMITVYCNCG 375

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMIS 334
           ++E+A  +F  MP +  +SW +++ G  + A   EA      M   ++        ++IS
Sbjct: 376 RVEDAKEVFNSMPNKTLISWNSILVGLTQNACPSEALDTFSMMNKLDVKMDKFSFASVIS 435

Query: 335 GYVQNKRMDEANQIFDKIGT----HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
                  ++   Q+F K  T     D +    ++  Y +CG ++    +F  M+  D V+
Sbjct: 436 ACAIKSSLELGEQLFGKAITLGLESDQIICTSLVDFYCKCGLVEMGRKVFDGMIKTDEVS 495

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
           WNTM+ GYA                                 N + ++AL +F  M   G
Sbjct: 496 WNTMLMGYA--------------------------------TNGYGIEALTLFNEMGYSG 523

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG----NSLITMYAKCGRI 506
            +    T    LSAC H   ++ GR +    +K  Y  D+  G    + ++ ++A+ G  
Sbjct: 524 VRPSAITFTGILSACDHCGLVEEGRDLFR-TMKHDY--DINPGIEHYSCMVDLFARVGCF 580

Query: 507 QNAELLFKDAD-PVDVISWNSLIAGYAINGNAT 538
             A  L ++     D   W S++ G   +GN T
Sbjct: 581 GEAMYLIEEMPFQADANMWLSVLRGCVSHGNKT 613


>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Vitis vinifera]
          Length = 829

 Score =  357 bits (917), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 227/656 (34%), Positives = 340/656 (51%), Gaps = 94/656 (14%)

Query: 168 SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK 227
           + +I + N+++SGY K GE+ +ASK F    +RD VSWN M+ G+V L + ++A +F + 
Sbjct: 31  TASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKS 90

Query: 228 IPEQNVV----SWVTMLSGYARNGRMLEARRLFDQMPIR-----NVVAWNAMIAAYVQRG 278
           +          S+ ++L G A  G  +E  +    M ++     NV A +A++  Y +  
Sbjct: 91  MKRYGFAVDGYSFGSILKGVACVG-YVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCE 149

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI------------ 326
           ++E+A  +F  +  RN V+W  +I GY ++     A  LLD M  + +            
Sbjct: 150 RVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLT 209

Query: 327 -----------------------AAQT----AMISGYVQNKRMDEANQIFD-KIGTHDVV 358
                                  A+ T    A+I+ Y +   +++A ++FD  I T D+V
Sbjct: 210 LLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLV 269

Query: 359 CWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTW----------------------- 391
            WN M+  Y    + +EA  LF +M       DI T+                       
Sbjct: 270 TWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQGQGKSLHGLV 329

Query: 392 ------------NTMIAGY--AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHL 437
                       N++IA Y  +  + MD+A+ IFE + + ++ VSWN++++GF Q+    
Sbjct: 330 IKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESL-ENKDHVSWNSILTGFSQSGLSE 388

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
           DALK F  M  +    DH   +  L +C+ LA LQLG+Q+H L +KSG+  + FV +SLI
Sbjct: 389 DALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLI 448

Query: 498 TMYAKCGRIQNAELLFKDADPVDV-ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
            MY+KCG I++A   F DA P D  I+WNSLI GYA +G    A+ LF  M    V  D 
Sbjct: 449 FMYSKCGVIEDARKSF-DATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDH 507

Query: 557 VTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVK 616
           +TF+ VL+ACSH+GLV+ G    + M   Y I P +EHYACMIDLL RAGRLDEA  +++
Sbjct: 508 ITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIE 567

Query: 617 GMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDE 676
            M  +P+A +W TLLGACR   +I+L       L ELEP++   Y LLS+M     RW+E
Sbjct: 568 AMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLELEPEEHCTYVLLSSMFGHLRRWNE 627

Query: 677 VEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
              ++  M+  G +K PG SWIEVKN++ +F + D       EI   L  L  +IR
Sbjct: 628 KASIKRLMKERGVKKVPGWSWIEVKNEVRSFNAEDRSHPNCEEIYLRLGELMEEIR 683



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 141/568 (24%), Positives = 263/568 (46%), Gaps = 92/568 (16%)

Query: 48  TYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM---- 103
           T N++IS YAK G +  A K+F +  QR+ VSWN+MIAG+++    + A E    M    
Sbjct: 36  TANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMKRYG 95

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAK 160
           F  D +S+  ++      G +E  +++  ++     + +    +A++  YAK     +A 
Sbjct: 96  FAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAF 155

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
           ++  ++  +N V+WN+++SGY + G+   A    + ME          L+G VE+DD   
Sbjct: 156 EVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCME----------LEG-VEIDDGTF 204

Query: 221 AW---------------KFFQKIPEQNVVSWVT----MLSGYARNGRMLEARRLFD-QMP 260
           A                +   KI +  + S  T    +++ Y+  G + +A R+FD  + 
Sbjct: 205 APLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIE 264

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARR 316
            R++V WN+M+AAY+   Q EEA +LF+EM     E +  ++T++I      +   + + 
Sbjct: 265 TRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQGQGKS 324

Query: 317 LLDQMPYKN----IAAQTAMISGYVQ--NKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC 370
           L   +  +     +    ++I+ Y++  +K MDEA  IF+ +   D V WN ++ G++Q 
Sbjct: 325 LHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGFSQS 384

Query: 371 GRMDEAINLFRQMVNKDIV---------------------------------------TW 391
           G  ++A+  F  M ++ +V                                         
Sbjct: 385 GLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVA 444

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
           +++I  Y++   ++DA K F+   K  ++++WN+LI G+ Q+     AL +F LM     
Sbjct: 445 SSLIFMYSKCGVIEDARKSFDATPK-DSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRV 503

Query: 452 KADHSTLACALSACAHLAALQLGRQ-IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
           K DH T    L+AC+H+  ++ G   +  +    G    +     +I +  + GR+  A+
Sbjct: 504 KLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAK 563

Query: 511 LLFKDADPV--DVISWNSLIAGYAINGN 536
            L  +A P   D + W +L+      G+
Sbjct: 564 ALI-EAMPFEPDAMVWKTLLGACRTCGD 590



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 101/425 (23%), Positives = 193/425 (45%), Gaps = 44/425 (10%)

Query: 29  GRVEEAIKIFSQM----SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMI 84
           G VE   ++ S M     + N    ++++  YAK  RV DA ++F+ +  RN V+WN++I
Sbjct: 114 GYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALI 173

Query: 85  AGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNK--- 137
           +GY        A  L D M       D  ++A ++T        +   ++   +      
Sbjct: 174 SGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLA 233

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLD-AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEA 196
            DT   NA++  Y++ G+  +A+++ D A+ ++++V+WNSML+ Y  N +   A + F  
Sbjct: 234 SDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLE 293

Query: 197 ME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSGY--ARN 246
           M+    E D+ ++  ++    E             + ++ +   V    ++++ Y  + +
Sbjct: 294 MQVLGFEPDIYTYTSVISAAFEGSHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHS 353

Query: 247 GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYV 306
             M EA  +F+ +  ++ V+WN+++  + Q G  E+A + F      N  S   +ID Y 
Sbjct: 354 KSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFF-----ENMRSQYVVIDHYA 408

Query: 307 RIAKL----DEARRLLDQMPY---------KNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
             A L    D A   L Q  +          N    +++I  Y +   +++A + FD   
Sbjct: 409 FSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATP 468

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVK 409
               + WN +I GYAQ GR   A++LF  M    V  D +T+  ++   + I  +++   
Sbjct: 469 KDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWS 528

Query: 410 IFEEM 414
             + M
Sbjct: 529 FLKSM 533



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 109/512 (21%), Positives = 213/512 (41%), Gaps = 104/512 (20%)

Query: 8   IGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG------- 60
           +G +G+ VF  +  +    K  RVE+A ++F  ++ +N+VT+N++IS YA+ G       
Sbjct: 129 MGYEGN-VFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFW 187

Query: 61  ----------RVNDA--------------RKLFEQMPQR--------NLVSWNSMIAGYL 88
                      ++D                KL  Q+  +        +    N++I  Y 
Sbjct: 188 LLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYS 247

Query: 89  HNDKVKEARELFDKMFRP-DLFSWALMITCYTRKGELEKARELF---DLLPNKEDTACWN 144
               +++A  +FD      DL +W  M+  Y    + E+A +LF    +L  + D   + 
Sbjct: 248 ECGSIEDAERVFDGAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYT 307

Query: 145 AMVAGYAKIGNYNEAKKLLDAMPSKNIVSW-----NSMLSGYTKNG--EMHLASKFFEAM 197
           ++++  A  G++    K L  +  K  + +     NS+++ Y K+    M  A   FE++
Sbjct: 308 SVISA-AFEGSHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESL 366

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV------------------------ 233
           E +D VSWN +L G+ +    + A KFF+ +  Q V                        
Sbjct: 367 ENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQ 426

Query: 234 -VSWVTMLSG--------------YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
            V  + + SG              Y++ G + +AR+ FD  P  + +AWN++I  Y Q G
Sbjct: 427 QVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHG 486

Query: 279 QIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPY-----KNIAAQ 329
           + + A  LF  M +R    + +++  ++     I  ++E    L  M         +   
Sbjct: 487 RGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHY 546

Query: 330 TAMISGYVQNKRMDEANQIFDKIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVN--- 385
             MI    +  R+DEA  + + +    D + W  ++     CG ++ A  +   ++    
Sbjct: 547 ACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLELEP 606

Query: 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
           ++  T+  + + +  +R+ ++   I   M +R
Sbjct: 607 EEHCTYVLLSSMFGHLRRWNEKASIKRLMKER 638



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 87/154 (56%), Gaps = 2/154 (1%)

Query: 478 HHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNA 537
           H LAIKSG    ++  N++I+ YAKCG I+ A  +F +    D +SWN++IAG+   GN 
Sbjct: 22  HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNF 81

Query: 538 TEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYAC 597
             A++  + M   G A D  +F  +L   + VG V+ G ++   M ++   E  V   + 
Sbjct: 82  ETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKM-GYEGNVFAGSA 140

Query: 598 MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           ++D+ ++  R+++AFE+ K + I+ N+  W  L+
Sbjct: 141 LLDMYAKCERVEDAFEVFKSINIR-NSVTWNALI 173


>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
 gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
          Length = 680

 Score =  357 bits (917), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 222/666 (33%), Positives = 360/666 (54%), Gaps = 62/666 (9%)

Query: 105 RPDLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNEAKK 161
           R D  ++  ++        ++K RE+  +   L    D    N ++  Y   G   + K+
Sbjct: 4   RLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDVKR 63

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER-----DVVSWNLMLDGYVELD 216
           + D M  +++VSWNS++  ++ +G    A   F  M  R     ++VS   +L     L+
Sbjct: 64  VFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAGLE 123

Query: 217 DLDSAWKFFQKIPEQNVVSWVT----MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
           D  +  +    + +  + S VT    ++  Y + G + ++RR+FD++  RN V+WNA+I 
Sbjct: 124 DGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAIIT 183

Query: 273 --AYVQRGQIE-EAARLFIEMPER-NPVSWTTMIDGYVRIAKLDEARRL----LDQMPYK 324
             AY++R Q   E  RL I+   + N V++++M+   V +   D  + +    L      
Sbjct: 184 SLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLES 243

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM- 383
           +I    A+I  Y ++ R  +A+ +F++IG  ++V WN M+  +AQ      A++L RQM 
Sbjct: 244 DIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQ 303

Query: 384 --------------------------------------VNKDIVTWNTMIAGYAQIRQMD 405
                                                  + D+   N +   YA+   ++
Sbjct: 304 ADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLN 363

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
            A ++F+     R+ VS+N LI G+ Q     ++L++F+ M  +G K D  +    +SAC
Sbjct: 364 LARRVFKI--SLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISAC 421

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
           A+LAAL+ G+++H LA++      LF+ N+L+  Y KCGRI  A  +F+     D  SWN
Sbjct: 422 ANLAALKQGKEVHGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIPSRDTASWN 481

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
           S+I GY + G  T AI LFE M  +GV  D V++I VLSACSH GLV+ G K FE M +V
Sbjct: 482 SMILGYGMLGELTIAINLFEAMKEDGVEYDSVSYIAVLSACSHGGLVEEGKKYFEHM-QV 540

Query: 586 YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI 645
             I+P   HYACM+DLL RAG ++EA ++++ + I+P+A +WG LLGACR+H  I+L   
Sbjct: 541 QNIKPTQMHYACMVDLLGRAGLIEEAVKLIESLPIEPDANVWGALLGACRIHGYIELAHW 600

Query: 646 AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705
           A E L +L+PQ +  Y++LSNM+AEAG+WDE  +VR  M+  GA+K PGCSW+++ NQ+H
Sbjct: 601 AAEHLFKLKPQHSGYYSVLSNMYAEAGKWDEANQVRKLMKSRGAKKNPGCSWVQIDNQVH 660

Query: 706 TFLSGD 711
            F++G+
Sbjct: 661 AFVAGE 666



 Score =  135 bits (341), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 106/416 (25%), Positives = 206/416 (49%), Gaps = 29/416 (6%)

Query: 26  GKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIA 85
           G +GR      + + +  + TV  N+++  Y K G V D+R++F+++ +RN VSWN++I 
Sbjct: 125 GVTGRQIHCYVVKTGLDSQVTVG-NALVDVYGKCGYVKDSRRVFDEISERNGVSWNAIIT 183

Query: 86  GYLHNDKVKEARELF----DKMFRPDLFSWALMITCYTRKGELEKAREL--FDLLPNKE- 138
              + ++ ++A E+F    D   +P+  +++ M+         +  +E+  F L    E 
Sbjct: 184 SLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLES 243

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN----GEMHLASKFF 194
           D    NA++  YAK G   +A  + + +  KNIVSWN+M++ + +N      + L  +  
Sbjct: 244 DIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQ 303

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI--PEQNVVSWVT--MLSGYARNGRML 250
              E  + V++  +L     +  L    +   +      +V  +V+  +   YA+ G + 
Sbjct: 304 ADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLN 363

Query: 251 EARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYV 306
            ARR+F ++ +R+ V++N +I  Y Q     E+ RLF+EM  +    + VS+  +I    
Sbjct: 364 LARRVF-KISLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISACA 422

Query: 307 RIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNV 362
            +A L + + +    + +  + ++    A++  Y++  R+D A ++F +I + D   WN 
Sbjct: 423 NLAALKQGKEVHGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIPSRDTASWNS 482

Query: 363 MIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           MI GY   G +  AINLF  M    V  D V++  +++  +    +++  K FE M
Sbjct: 483 MILGYGMLGELTIAINLFEAMKEDGVEYDSVSYIAVLSACSHGGLVEEGKKYFEHM 538



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 153/676 (22%), Positives = 290/676 (42%), Gaps = 144/676 (21%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S VF  N  +   G  G +++  ++F +M +++ V++NS+I  ++ +G   +A  LF +M
Sbjct: 40  SDVFVGNTLLLFYGNCGGLKDVKRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEM 99

Query: 73  PQR-----NLVS-----------------------------------WNSMIAGYLHNDK 92
             R     N+VS                                    N+++  Y     
Sbjct: 100 NLRSGFRPNMVSIVSVLPVCAGLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGY 159

Query: 93  VKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAG 149
           VK++R +FD++   +  SW  +IT        + A E+F L+ +   K ++  +++M+  
Sbjct: 160 VKDSRRVFDEISERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPV 219

Query: 150 YAKIGNYNEAKKL----LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW 205
             ++  ++  K++    L      +I   N+++  Y K+G    AS  F  + E+++VSW
Sbjct: 220 LVELKLFDFGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSW 279

Query: 206 NLMLDGY----VELDDLDSAWKFFQKIPEQNVVSWVTMLS-----GYARNGRMLEARRLF 256
           N M+  +    +EL  +D   +        N V++  +L      G+ R G+ + AR + 
Sbjct: 280 NAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIR 339

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
               +   V+ NA+   Y + G +  A R+F ++  R+ VS+  +I GY +     E+ R
Sbjct: 340 TGSSVDLFVS-NALTDMYAKCGCLNLARRVF-KISLRDEVSYNILIIGYSQTTNCSESLR 397

Query: 317 L----------LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG 366
           L          LD + Y  + +  A ++   Q K +     +   + TH  +  N ++  
Sbjct: 398 LFLEMGIKGMKLDVVSYMGVISACANLAALKQGKEV-HGLAVRKHLHTHLFIA-NALLDF 455

Query: 367 YAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNAL 426
           Y +CGR+D A  +FRQ+ ++D  +WN+MI GY  + ++  A+ +FE              
Sbjct: 456 YIKCGRIDLAGKVFRQIPSRDTASWNSMILGYGMLGELTIAINLFEA------------- 502

Query: 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
                              M ++G + D  +    LSAC+H   ++ G++         Y
Sbjct: 503 -------------------MKEDGVEYDSVSYIAVLSACSHGGLVEEGKK---------Y 534

Query: 487 VNDLFVGNSLIT-MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
              + V N   T M+  C               VD++    LI          EA+KL E
Sbjct: 535 FEHMQVQNIKPTQMHYAC--------------MVDLLGRAGLI---------EEAVKLIE 571

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE-VYAIEPLVE-HYACMIDLLS 603
            + +E   PD   +  +L AC     + G ++L     E ++ ++P    +Y+ + ++ +
Sbjct: 572 SLPIE---PDANVWGALLGACR----IHGYIELAHWAAEHLFKLKPQHSGYYSVLSNMYA 624

Query: 604 RAGRLDEAFEMVKGMK 619
            AG+ DEA ++ K MK
Sbjct: 625 EAGKWDEANQVRKLMK 640



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 76/126 (60%), Gaps = 3/126 (2%)

Query: 450 GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA 509
           G + D  T    L ACA   ++Q GR+IH +  K G+ +D+FVGN+L+  Y  CG +++ 
Sbjct: 2   GVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDV 61

Query: 510 ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEM-VMEGVAPDPVTFIGVLSACSH 568
           + +F +    DV+SWNS+I  ++++G   EAI LF EM +  G  P+ V+ + VL  C+ 
Sbjct: 62  KRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCA- 120

Query: 569 VGLVDG 574
            GL DG
Sbjct: 121 -GLEDG 125


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  357 bits (917), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 194/551 (35%), Positives = 307/551 (55%), Gaps = 23/551 (4%)

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
           D    N +L  Y +  +L  A   F K+  ++V SW  MLS Y+++G + + R +FDQM 
Sbjct: 57  DTFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMS 116

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
           + + V++N +IA +   G   +A   F+ M E    S       Y  ++ L    +LLD 
Sbjct: 117 VHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFES-----TDYTHVSVLHACSQLLDI 171

Query: 321 MPYKNIAAQ-------------TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367
              K I  +              A+ + Y +   +D+A  +FD++   +VV WN MI GY
Sbjct: 172 KRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGY 231

Query: 368 AQCGRMDEAINLFRQMVNK----DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
            Q G+ +    LF +M +     D VT + +++ Y Q   +D+A K F E+ K ++ V W
Sbjct: 232 LQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREI-KEKDKVCW 290

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
             ++ G  QN    DAL +F  M  E  + D+ T++  +S+CA LA+L  G+ +H  A+ 
Sbjct: 291 TTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVI 350

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
            G  +DL V ++L+ MY+KCG   +A ++FK     +VISWNS+I GYA NG   EA+ L
Sbjct: 351 FGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALAL 410

Query: 544 FEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLS 603
           +EEM+ E + PD +TF+GVLSAC H GLV+ G   F  +++++ + P  +HY+CMI+LL 
Sbjct: 411 YEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLG 470

Query: 604 RAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYAL 663
           RAG +D+A +++K M  +PN  IW TLL  CR++ ++  G +A   L EL+P     Y +
Sbjct: 471 RAGYMDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIM 530

Query: 664 LSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNT 723
           LSN++A  GRW +V  VR  M+ +  +K    SWIE+ NQ+H F++ D     T +I   
Sbjct: 531 LSNIYAACGRWKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFVAEDRTHSETEQIYEE 590

Query: 724 LKTLAAQIRNT 734
           L  L  +++ +
Sbjct: 591 LNRLIKKLQES 601



 Score =  182 bits (463), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 131/448 (29%), Positives = 222/448 (49%), Gaps = 40/448 (8%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            F QN+ +    KSG + +A  +F +MS+++  ++N+M+SAY+K+G V D R +F+QM  
Sbjct: 58  TFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSV 117

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
            + VS+N++IAG+  N    +A E F +M      S     T YT    L    +L D+ 
Sbjct: 118 HDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFES-----TDYTHVSVLHACSQLLDIK 172

Query: 135 PNK------------EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYT 182
             K            E    WNA+   YAK G  ++A+ L D M +KN+VSWNSM+SGY 
Sbjct: 173 RGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYL 232

Query: 183 KNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
           +NG+    +K F  M+      D V+ + +L  Y +   +D A K F++I E++ V W T
Sbjct: 233 QNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTT 292

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ---------RGQIEEAARLFIE 289
           M+ G A+NG+  +A  LF +M + NV   N  I++ V          +GQ      +   
Sbjct: 293 MMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFG 352

Query: 290 MPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF 349
           +     VS + ++D Y +  +  +A  +  +M  +N+ +  +MI GY QN +  EA  ++
Sbjct: 353 VDHDLLVS-SALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALY 411

Query: 350 DKIGTHDVVCWNVMIKG-YAQC---GRMDEAINLFRQM-----VNKDIVTWNTMIAGYAQ 400
           +++   ++   N+   G  + C   G ++     F  +     +N     ++ MI    +
Sbjct: 412 EEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGR 471

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALIS 428
              MD AV + + M    N + W+ L+S
Sbjct: 472 AGYMDKAVDLIKSMTFEPNCLIWSTLLS 499



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 141/522 (27%), Positives = 229/522 (43%), Gaps = 119/522 (22%)

Query: 113 LMITCYTRKGELEKAREL---FDL-LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS 168
           L++ C  R  ++ +A+ L    DL L    DT   N ++  YAK GN ++A+ L D M  
Sbjct: 28  LLLQC-VRSNDVVQAKRLQTHMDLHLYQPTDTFLQNRLLHLYAKSGNLSDARDLFDKMSR 86

Query: 169 KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI 228
           +++ SWN+MLS Y+K+G +      F+ M   D VS+N ++ G+        A +FF ++
Sbjct: 87  RDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRM 146

Query: 229 PE---------------------------------------QNVVSWVTMLSGYARNGRM 249
            E                                       ++V  W  + + YA+ G +
Sbjct: 147 QEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGAL 206

Query: 250 LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIA 309
            +AR LFD+M  +NVV+WN+MI+ Y+Q GQ E   +LF EM     +             
Sbjct: 207 DQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMP------------ 254

Query: 310 KLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ 369
                    DQ+   NI      +S Y Q   +DEA + F +I   D VCW  M+ G AQ
Sbjct: 255 ---------DQVTISNI------LSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQ 299

Query: 370 CGRMDEAINLFRQM---------------------------------------VNKDIVT 390
            G+ ++A+ LFR+M                                       V+ D++ 
Sbjct: 300 NGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLV 359

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
            + ++  Y++  +  DA  +F+ M  R N +SWN++I G+ QN   L+AL ++  M  E 
Sbjct: 360 SSALVDMYSKCGETADAWIVFKRMLTR-NVISWNSMILGYAQNGKDLEALALYEEMLHEN 418

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS-LITMYAKCGRIQNA 509
            K D+ T    LSAC H   ++ G+   +   K   +N  F   S +I +  + G +  A
Sbjct: 419 LKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKA 478

Query: 510 ELLFKDA--DPVDVISWNSLIAGYAINGNATE----AIKLFE 545
             L K    +P + + W++L++   IN +       A  LFE
Sbjct: 479 VDLIKSMTFEP-NCLIWSTLLSVCRINCDVNNGEMAARHLFE 519


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  357 bits (917), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 190/533 (35%), Positives = 308/533 (57%), Gaps = 49/533 (9%)

Query: 243 YARNGRMLEARRLFDQMPI--RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTT 300
           YAR G +  AR++FD++P   R V  WNAM++ Y +     +A  LF  MPERN ++WT 
Sbjct: 140 YARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTA 199

Query: 301 MIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH----D 356
           M+ GY ++  L+ ARR  D MP +++ +  AM+SGY QN   +E  ++FD++       D
Sbjct: 200 MVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPD 259

Query: 357 VVCWNVMIKG-----------------------------------YAQCGRMDEAINLFR 381
              W  +I                                     YA+CG +  A  +F 
Sbjct: 260 ETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRIFD 319

Query: 382 QM-VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
           ++   ++ VTWN MI+ Y ++  +D A ++F  M   RN V+WN++I+G+ QN     A+
Sbjct: 320 ELGAYRNSVTWNAMISAYTRVGNLDSARELFNTM-PGRNVVTWNSMIAGYAQNGQSAMAI 378

Query: 441 KIFV-LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
           ++F  ++T +    D  T+   +SAC HL AL+LG  +     ++     +   N++I M
Sbjct: 379 ELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFM 438

Query: 500 YAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTF 559
           Y++CG +++A+ +F++    DV+S+N+LI+G+A +G+  EAI L   M   G+ PD VTF
Sbjct: 439 YSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTF 498

Query: 560 IGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMK 619
           IGVL+ACSH GL++ G K+FE + +     P ++HYACM+DLL R G L++A   ++ M 
Sbjct: 499 IGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKRTMERMP 553

Query: 620 IKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEK 679
           ++P+AG++G+LL A R+H+ ++LG +A  KL ELEP  +  + LLSN++A AGRW +VE+
Sbjct: 554 MEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVER 613

Query: 680 VRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +R +M+  G +K  G SW+E   ++H F+  D    R+ +I   L  L  ++R
Sbjct: 614 IREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMR 666



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 144/465 (30%), Positives = 227/465 (48%), Gaps = 58/465 (12%)

Query: 68  LFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGE 123
           LF      N+  + SM+  Y H     +   +F+ M     RPD F + ++I      G 
Sbjct: 56  LFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGNGGI 115

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS--KNIVSWNSMLSGY 181
              A  L   L +  D    NA++  YA++G    A+K+ D +P   + +  WN+M+SGY
Sbjct: 116 GFHAHVL--KLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGY 173

Query: 182 TKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
            K      A   F+ M ER+V++W  M+ GY ++ DL++A ++F  +PE++VVSW  MLS
Sbjct: 174 WKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLS 233

Query: 242 GYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPER---- 293
           GYA+NG   E  RLFD+M    +      W  +I+A   RG    AA L   + ++    
Sbjct: 234 GYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQL 293

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQM-PYKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
           N    T ++D Y +   +  ARR+ D++  Y+N     AMIS Y +   +D A ++F+ +
Sbjct: 294 NCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTM 353

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT---------------------- 390
              +VV WN MI GYAQ G+   AI LF++M+    +T                      
Sbjct: 354 PGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELG 413

Query: 391 -W-----------------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
            W                 N MI  Y++   M+DA ++F+EM   R+ VS+N LISGF  
Sbjct: 414 NWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMAT-RDVVSYNTLISGFAA 472

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI 477
           +   ++A+ +   M + G + D  T    L+AC+H   L+ GR++
Sbjct: 473 HGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKV 517



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 205/426 (48%), Gaps = 23/426 (5%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMS--QKNTVTYNSMISAYAKNGRVNDARKLF 69
           GS  F +N  I    + G +  A K+F ++   ++    +N+M+S Y K      A+ LF
Sbjct: 127 GSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLF 186

Query: 70  EQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARE 129
           + MP+RN+++W +M+ GY     ++ AR  FD M    + SW  M++ Y + G  E+   
Sbjct: 187 DVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLR 246

Query: 130 LFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSMLSGYT 182
           LFD + N   + D   W  +++  +  G+   A  L+  +  K    N     ++L  Y 
Sbjct: 247 LFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYA 306

Query: 183 KNGEMHLASKFFEAM-EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
           K G +  A + F+ +   R+ V+WN M+  Y  + +LDSA + F  +P +NVV+W +M++
Sbjct: 307 KCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIA 366

Query: 242 GYARNGRMLEARRLFDQMPIR-----NVVAWNAMIAAYVQRGQIEEA---ARLFIEMPER 293
           GYA+NG+   A  LF +M        + V   ++I+A    G +E      R   E   +
Sbjct: 367 GYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIK 426

Query: 294 NPVS-WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
             +S    MI  Y R   +++A+R+  +M  +++ +   +ISG+  +    EA  +   +
Sbjct: 427 LSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTM 486

Query: 353 G----THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAV 408
                  D V +  ++   +  G ++E   +F  + +  I  +  M+    ++ +++DA 
Sbjct: 487 KEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAIDHYACMVDLLGRVGELEDAK 546

Query: 409 KIFEEM 414
           +  E M
Sbjct: 547 RTMERM 552



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 164/333 (49%), Gaps = 17/333 (5%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQM-SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           F +   +    K G +  A +IF ++ + +N+VT+N+MISAY + G ++ AR+LF  MP 
Sbjct: 296 FVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPG 355

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARE 129
           RN+V+WNSMIAGY  N +   A ELF +M       PD  +   +I+     G LE    
Sbjct: 356 RNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNW 415

Query: 130 LFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           +   L     K   +  NAM+  Y++ G+  +AK++   M ++++VS+N+++SG+  +G 
Sbjct: 416 VVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGH 475

Query: 187 ----MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG 242
               ++L S   E   E D V++  +L        L+   K F+ I +  +  +  M+  
Sbjct: 476 GVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAIDHYACMVDL 535

Query: 243 YARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSW 298
             R G + +A+R  ++MP+  +   + +++ A     Q+   E AA    E+   N  ++
Sbjct: 536 LGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNF 595

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
             + + Y    +  +  R+ + M    +   T 
Sbjct: 596 ILLSNIYASAGRWKDVERIREAMKKGGVKKTTG 628



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 97/206 (47%), Gaps = 17/206 (8%)

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVD--VISWNSLIAGY 531
           G   H   +K G+ +D FV N++I MYA+ G I +A  +F +    +  V  WN++++GY
Sbjct: 114 GIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGY 173

Query: 532 AINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL 591
               +  +A  LF+ M    V    +T+  +++  + V  ++   + F+CM E   +   
Sbjct: 174 WKWESEGQAQWLFDVMPERNV----ITWTAMVTGYAKVKDLEAARRYFDCMPERSVVS-- 227

Query: 592 VEHYACMIDLLSRAGRLDEAFEMVKGM---KIKPNAGIWGTLLGACRMHQNIKLGRIAVE 648
              +  M+   ++ G  +E   +   M    I+P+   W T++ AC    +  L    V 
Sbjct: 228 ---WNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVR 284

Query: 649 KLSELEPQKTSCY--ALLSNMHAEAG 672
            L + + Q  +C+    L +M+A+ G
Sbjct: 285 TLHQKQIQ-LNCFVRTALLDMYAKCG 309


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 234/771 (30%), Positives = 391/771 (50%), Gaps = 70/771 (9%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL 88
           GR   A+   S   + + V    +I+ Y+  G  +D+R +F+   +++L  +N++++GY 
Sbjct: 111 GRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYS 170

Query: 89  HNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARELFDLLPNK---EDT 140
            N   ++A  LF ++       PD F+   +        ++E    +  L        D 
Sbjct: 171 RNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDA 230

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM--- 197
              NA++A Y K G    A K+ + M ++N+VSWNS++   ++NG        F+ +   
Sbjct: 231 FVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLIS 290

Query: 198 EER----DVVSWNLMLD-----GYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGR 248
           EE     DV +   ++      G V +  +     F   I E+  V+  +++  Y++ G 
Sbjct: 291 EEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVN-NSLVDMYSKCGY 349

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM--PERNPVSWTTMID--- 303
           + EAR LFD    +NVV+WN +I  Y + G       L  EM   E+  V+  T+++   
Sbjct: 350 LGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLP 409

Query: 304 ---GYVRIAKLDEARRLLDQMPY-KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
              G  ++  L E      +  + K+     A ++ Y +   +D A ++F  +    V  
Sbjct: 410 ACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSS 469

Query: 360 WNVMIKGYAQCGRMDEAINLFRQMVNK----DIVTWNTMIAGYAQIR------------- 402
           WN +I  +AQ G   ++++LF  M++     D  T  +++   A+++             
Sbjct: 470 WNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFML 529

Query: 403 ----QMDDAVKI------------------FEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
               ++D+ + I                  F++M + ++ V WN +I+GF QNE   +AL
Sbjct: 530 RNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKM-ENKSLVCWNVMITGFSQNELPCEAL 588

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500
             F  M   G K     +   L AC+ ++AL+LG+++H  A+K+    D FV  +LI MY
Sbjct: 589 DTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMY 648

Query: 501 AKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
           AKCG ++ ++ +F   +  D   WN +IAGY I+G+  +AI+LFE M  +G  PD  TF+
Sbjct: 649 AKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFL 708

Query: 561 GVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKI 620
           GVL AC+H GLV  GLK    M  +Y ++P +EHYAC++D+L RAG+L EA ++V  M  
Sbjct: 709 GVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPD 768

Query: 621 KPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKV 680
           +P++GIW +LL +CR + ++++G    +KL ELEP K   Y LLSN++A  G+WDEV KV
Sbjct: 769 EPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKV 828

Query: 681 RVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           R  M+ +G  K  GCSWIE+   ++ FL  D     + +I  T   L  +I
Sbjct: 829 RQRMKENGLHKDAGCSWIEIGGMVYRFLVSDGSLSESKKIQQTWIKLEKKI 879



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 164/669 (24%), Positives = 283/669 (42%), Gaps = 125/669 (18%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S  F  N  I   GK G VE A+K+F  M  +N V++NS++ A ++NG   +   +F+++
Sbjct: 228 SDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRL 287

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD 132
               L+S                     ++   PD+ +   +I      GE+     +  
Sbjct: 288 ----LISE--------------------EEGLVPDVATMVTVIPACAAVGEVRMGMVVHG 323

Query: 133 L---LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           L   L   E+    N++V  Y+K G   EA+ L D    KN+VSWN+++ GY+K G+   
Sbjct: 324 LAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRG 383

Query: 190 ASKFFEAMEERDVVSWNLM--------LDGYVELDDLDS--AWKFFQKIPEQNVVSWVTM 239
             +  + M+  + V  N +          G  +L  L     + F     +  +V+    
Sbjct: 384 VFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVA-NAF 442

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PER 293
           ++ YA+   +  A R+F  M  + V +WNA+I A+ Q G   ++  LF+ M      P+R
Sbjct: 443 VAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDR 502

Query: 294 NPVSWTTMIDG---YVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD 350
             +    +      ++R  K      L + +         +++S Y+Q   M     IFD
Sbjct: 503 FTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIG-ISLMSLYIQCSSMLLGKLIFD 561

Query: 351 KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAG------------- 397
           K+    +VCWNVMI G++Q     EA++ FRQM++  I      + G             
Sbjct: 562 KMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRL 621

Query: 398 --------------------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFL 431
                                     YA+   M+ +  IF+ + ++   V WN +I+G+ 
Sbjct: 622 GKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAV-WNVIIAGYG 680

Query: 432 QNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLF 491
            +   L A+++F LM  +G + D  T    L AC H   +  G +        G + +L+
Sbjct: 681 IHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKY------LGQMQNLY 734

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
                +  YA C               VD++       G A  G  TEA+KL  EM  E 
Sbjct: 735 GVKPKLEHYA-C--------------VVDML-------GRA--GQLTEALKLVNEMPDE- 769

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP-LVEHYACMIDLLSRAGRLDE 610
             PD   +  +LS+C + G ++ G ++ + + E   +EP   E+Y  + +L +  G+ DE
Sbjct: 770 --PDSGIWSSLLSSCRNYGDLEIGEEVSKKLLE---LEPNKAENYVLLSNLYAGLGKWDE 824

Query: 611 AFEMVKGMK 619
             ++ + MK
Sbjct: 825 VRKVRQRMK 833



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 8/203 (3%)

Query: 438 DALKIFVLMTQEGKKADHS----TLACALSACAHLAALQLGRQIHHLAIKSGYV-NDLFV 492
           DAL +     Q G  +        +   L AC H   + +GR++H L   S  + ND+ +
Sbjct: 71  DALNLLHSHAQNGTVSSSDISKEAIGILLRACGHHKNIHVGRKVHALVSASHKLRNDVVL 130

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV-MEG 551
              +I MY+ CG   ++  +F  A   D+  +N+L++GY+ N    +AI LF E++    
Sbjct: 131 STRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATD 190

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
           +APD  T   V  AC+ V  V+ G  +     +           A +I +  + G ++ A
Sbjct: 191 LAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNA-LIAMYGKCGFVESA 249

Query: 612 FEMVKGMKIKPNAGIWGTLLGAC 634
            ++ + M+ + N   W +++ AC
Sbjct: 250 VKVFETMRNR-NLVSWNSVMYAC 271


>gi|224066769|ref|XP_002302206.1| predicted protein [Populus trichocarpa]
 gi|222843932|gb|EEE81479.1| predicted protein [Populus trichocarpa]
          Length = 681

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 212/665 (31%), Positives = 335/665 (50%), Gaps = 67/665 (10%)

Query: 93  VKEARELFDKMFRPDLFSWAL-----MITCYTRKGELEKARELFDLLPNKEDTACWNAMV 147
           + + ++L    F+  L    L     ++  YTR G +  A +LFD +P++ +   WN M+
Sbjct: 21  IHQGKQLHILFFKKGLIQSTLSLANRLLQMYTRCGSMTDAHKLFDEMPHR-NCFSWNTMI 79

Query: 148 AGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL 207
            GY K GN   + +L D M +KN  SWN + SG+ K GEM +A + F  M  R+ V WN 
Sbjct: 80  EGYMKSGNKERSIRLFDMMSNKNDYSWNVVFSGFAKAGEMEIARRLFNEMPNRNGVVWNS 139

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQ-------------NVVSWVTMLSGYARNGRMLEARR 254
           M+  Y        A + F+++                 V+   T L G  + G+ + AR 
Sbjct: 140 MIHSYARNGSPREAVRLFKELNLDPLDKSCCDTFVLATVIGACTDL-GEIQCGKQIHARI 198

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
           L D M + +V+  +++I  Y + G ++ A  +   M E +  S + +I GY    ++++A
Sbjct: 199 LIDNMELDSVLT-SSLINLYGKCGDLDSAHCVLNTMEEPDDFSLSALITGYANHGRMNDA 257

Query: 315 RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD------------------------ 350
           RR   +     +    ++ISGYV N    EA  +F+                        
Sbjct: 258 RRAFYRKSNSCVVVWNSLISGYVTNNEEIEAFLLFNDMQKKGLKVDFSTLATILSACSSL 317

Query: 351 --------------KIGTHDVVCWNVM----IKGYAQCGRMDEAINLFRQMVNKDIVTWN 392
                         K+G   ++C NV+    I  Y++CG +++A  LF ++   D +  N
Sbjct: 318 CNSQHGKQMHAYACKVG---LICDNVVASAFIDAYSKCGSLNDACKLFSELKTYDTILLN 374

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
           +MI  Y+   +++DA +IF  M   ++ +SWN++I G  QN   ++AL +F +M +   +
Sbjct: 375 SMITVYSNSGKIEDAKQIFNTM-PSKSLISWNSMIVGLSQNGCPVEALDLFCMMNKLDLR 433

Query: 453 ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512
            +   L   +SACA +++L+LG QI   A   G  +D  +  SL+  Y KCG I+    L
Sbjct: 434 MNRFNLTSVISACASISSLELGEQIFARATVVGLDSDEVISTSLVDFYCKCGFIEIGRKL 493

Query: 513 FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
           F      D ISWNS++ GYA NG+  EA+ LF EM   GV P  +TF GVLSAC H GLV
Sbjct: 494 FDTMMKSDEISWNSMLMGYATNGHGLEALTLFNEMRHAGVRPTEITFTGVLSACDHCGLV 553

Query: 573 DGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLG 632
             G + F  M   Y I+P +EHY+CM+DL +RAG L+EA  ++K M  + +A +W ++L 
Sbjct: 554 KEGWRWFNIMQYDYHIDPGIEHYSCMVDLFARAGCLEEAMNLIKRMPFEADASMWSSVLR 613

Query: 633 ACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQ 692
            C  H    LG    +++ EL+P+ +  Y  LS++ A +G W+    VR  M+    QK 
Sbjct: 614 GCMAHGEKDLGEKVAQQIIELDPENSGAYVQLSSIFATSGDWESSALVRKVMQERQVQKY 673

Query: 693 PGCSW 697
           PG SW
Sbjct: 674 PGYSW 678



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 148/593 (24%), Positives = 262/593 (44%), Gaps = 91/593 (15%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            F+ N  I    KSG  E +I++F  MS KN  ++N + S +AK G +  AR+LF +MP 
Sbjct: 72  CFSWNTMIEGYMKSGNKERSIRLFDMMSNKNDYSWNVVFSGFAKAGEMEIARRLFNEMPN 131

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKM-FRP------DLFSWALMITCYTRKGELEKA 127
           RN V WNSMI  Y  N   +EA  LF ++   P      D F  A +I   T  GE++  
Sbjct: 132 RNGVVWNSMIHSYARNGSPREAVRLFKELNLDPLDKSCCDTFVLATVIGACTDLGEIQCG 191

Query: 128 RELFD--LLPNKE-DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
           +++    L+ N E D+   ++++  Y K G+ + A  +L+ M   +  S +++++GY  +
Sbjct: 192 KQIHARILIDNMELDSVLTSSLINLYGKCGDLDSAHCVLNTMEEPDDFSLSALITGYANH 251

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTML 240
           G M+ A + F       VV WN ++ GYV  ++   A+  F  + ++    +  +  T+L
Sbjct: 252 GRMNDARRAFYRKSNSCVVVWNSLISGYVTNNEEIEAFLLFNDMQKKGLKVDFSTLATIL 311

Query: 241 S-----------------------------------GYARNGRMLEARRLFDQMPIRNVV 265
           S                                    Y++ G + +A +LF ++   + +
Sbjct: 312 SACSSLCNSQHGKQMHAYACKVGLICDNVVASAFIDAYSKCGSLNDACKLFSELKTYDTI 371

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
             N+MI  Y   G+IE+A ++F  MP ++ +SW +MI G  +     EA  L   M   +
Sbjct: 372 LLNSMITVYSNSGKIEDAKQIFNTMPSKSLISWNSMIVGLSQNGCPVEALDLFCMMNKLD 431

Query: 326 IAAQ----TAMISGYVQNKRMDEANQIFDK---IG-THDVVCWNVMIKGYAQCGRMDEAI 377
           +       T++IS       ++   QIF +   +G   D V    ++  Y +CG ++   
Sbjct: 432 LRMNRFNLTSVISACASISSLELGEQIFARATVVGLDSDEVISTSLVDFYCKCGFIEIGR 491

Query: 378 NLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHL 437
            LF  M+  D ++WN+M+ GYA                                 N   L
Sbjct: 492 KLFDTMMKSDEISWNSMLMGYA--------------------------------TNGHGL 519

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS-L 496
           +AL +F  M   G +    T    LSAC H   ++ G +  ++     +++      S +
Sbjct: 520 EALTLFNEMRHAGVRPTEITFTGVLSACDHCGLVKEGWRWFNIMQYDYHIDPGIEHYSCM 579

Query: 497 ITMYAKCGRIQNAELLFKDAD-PVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           + ++A+ G ++ A  L K      D   W+S++ G   +G      K+ ++++
Sbjct: 580 VDLFARAGCLEEAMNLIKRMPFEADASMWSSVLRGCMAHGEKDLGEKVAQQII 632


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  357 bits (915), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 219/673 (32%), Positives = 355/673 (52%), Gaps = 63/673 (9%)

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------PSKNIVSW--N 175
           L  A+E+F+   +      +N+++ GYA  G  NEA  L   M      P K    +  +
Sbjct: 83  LSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLS 142

Query: 176 SMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
           +      K   + +     +    +D+   N ++  Y E  +LDSA K F ++ E+NVVS
Sbjct: 143 ACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVS 202

Query: 236 WVTMLSGYARNGRMLEARRLF-----DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
           W +M+ GYAR     +A  LF     D+    N V    +I+A  +   +E   +++  +
Sbjct: 203 WTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFI 262

Query: 291 P----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEAN 346
                E N +  + ++D Y++   +D A+RL D+    N+    AM S YV+     EA 
Sbjct: 263 RNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREAL 322

Query: 347 QIF----------DKIG------------------------------THDVVCWNVMIKG 366
            +F          D+I                               + D +C N +I  
Sbjct: 323 GVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNIC-NALIDM 381

Query: 367 YAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNAL 426
           Y +C R D A  +F +M NK +VTWN+++AGY +  ++D A + FE M   +N VSWN +
Sbjct: 382 YMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETM-PEKNIVSWNTI 440

Query: 427 ISGFLQNEFHLDALKIFVLM-TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485
           ISG +Q     +A+++F  M +QEG  AD  T+    SAC HL AL L + I++   K+G
Sbjct: 441 ISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNG 500

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
              D+ +G +L+ M+++CG  ++A  +F      DV +W + I   A+ GNA  AI+LF+
Sbjct: 501 IQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFD 560

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRA 605
           +M+ +G+ PD V F+G L+ACSH GLV  G ++F  M +++ + P   HY CM+DLL RA
Sbjct: 561 DMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRA 620

Query: 606 GRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLS 665
           G L+EA ++++ M ++PN  IW +LL ACR+  N+++   A EK+  L P++T  Y LLS
Sbjct: 621 GLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLS 680

Query: 666 NMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD---PKQCRTAEICN 722
           N++A AGRW+++ KVR+SM+  G +K PG S I+++ + H F SGD   P+      + +
Sbjct: 681 NVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLD 740

Query: 723 TLKTLAAQIRNTP 735
            +   A+ + + P
Sbjct: 741 EVSQRASHLGHVP 753



 Score =  175 bits (444), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 146/538 (27%), Positives = 243/538 (45%), Gaps = 87/538 (16%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
           K+    NS++  YA+ G ++ ARK+F++M +RN+VSW SMI GY   D  K+A +LF +M
Sbjct: 167 KDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRM 226

Query: 104 FR-----PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGN 155
            R     P+  +   +I+   +  +LE   +++  + N   + +    +A+V  Y K   
Sbjct: 227 VRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNA 286

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
            + AK+L D   + N+   N+M S Y + G    A   F           NLM+D  V  
Sbjct: 287 IDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVF-----------NLMMDSGVRP 335

Query: 216 DDLDSAWKFFQKIPEQNVVSWVTMLSGYA-RNG-------------------RMLEARRL 255
           D + S         +   + W     GY  RNG                   R   A R+
Sbjct: 336 DRI-SMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRI 394

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR 315
           FD+M  + VV WN+++A YV+ G+++ A   F  MPE+N VSW T+I G V+ +  +EA 
Sbjct: 395 FDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAI 454

Query: 316 RLLDQMPYK---NIAAQTAM--ISGYVQNKRMDEANQIF---DKIGTH-DVVCWNVMIKG 366
            +   M  +   N    T M   S       +D A  I+   +K G   DV     ++  
Sbjct: 455 EVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDM 514

Query: 367 YAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNAL 426
           +++CG  + A+++F  + N+D+  W   I   A     + A+++F++             
Sbjct: 515 FSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDD------------- 561

Query: 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
                              M ++G K D      AL+AC+H   +Q G++I +  +K   
Sbjct: 562 -------------------MIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHG 602

Query: 487 VN--DLFVGNSLITMYAKCGRIQNAELLFKD--ADPVDVISWNSLIAGYAINGNATEA 540
           V+  D+  G  ++ +  + G ++ A  L +D   +P DVI WNSL+A   + GN   A
Sbjct: 603 VSPEDVHYG-CMVDLLGRAGLLEEAVQLIEDMPMEPNDVI-WNSLLAACRVQGNVEMA 658



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 111/206 (53%), Gaps = 4/206 (1%)

Query: 378 NLFRQMVNKDIVTWNTMIAGYAQI---RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
           +L +Q ++ D+ T   ++A   ++     +  A ++FE          +N+LI G+  + 
Sbjct: 54  SLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSG 113

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN 494
              +A+ +F+ M   G   D  T    LSACA   A   G QIH L +K GY  DLFV N
Sbjct: 114 LCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQN 173

Query: 495 SLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM-EGVA 553
           SL+  YA+CG + +A  +F +    +V+SW S+I GYA    A +A+ LF  MV  E V 
Sbjct: 174 SLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVT 233

Query: 554 PDPVTFIGVLSACSHVGLVDGGLKLF 579
           P+ VT + V+SAC+ +  ++ G K++
Sbjct: 234 PNSVTMVCVISACAKLEDLETGEKVY 259



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 141/304 (46%), Gaps = 36/304 (11%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I    K  R + A +IF +MS K  VT+NS+++ Y +NG V+ A + FE MP++N+V
Sbjct: 376 NALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIV 435

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFDL 133
           SWN++I+G +     +EA E+F  M        D  +   + +     G L+ A+ ++  
Sbjct: 436 SWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYY 495

Query: 134 LPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           +     + D      +V  +++ G+   A  + +++ ++++ +W + +      G    A
Sbjct: 496 IEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERA 555

Query: 191 SKFFEAMEERDVVSWNLMLDGYVELDDLD----------------SAWKFFQKIPEQNVV 234
            + F+     D++   L  DG   +  L                 S  K     PE   V
Sbjct: 556 IELFD-----DMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPED--V 608

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAA----RLFIE 289
            +  M+    R G + EA +L + MP+  N V WN+++AA   +G +E AA    ++ + 
Sbjct: 609 HYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVL 668

Query: 290 MPER 293
            PER
Sbjct: 669 APER 672


>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 813

 Score =  357 bits (915), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 239/733 (32%), Positives = 383/733 (52%), Gaps = 81/733 (11%)

Query: 51  SMISAYAKNGRVNDARKLFEQMP--QRNLVSWNSMI-----AGYLHNDKVKEARELFDKM 103
           S+I  YA  G  +++  LF+      R+   WN++I     AG    D       +    
Sbjct: 75  SLILQYASFGHPSNSLLLFQHSVAYSRSAFLWNTLIRANSIAGVF--DGFGTYNTMVRAG 132

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNEAK 160
            +PD  ++  ++   +   E+ K RE+  +   L    D    N ++A Y   G + +A 
Sbjct: 133 VKPDECTYPFVLKVCSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAM 192

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME------ERDVVSWNLMLDGYVE 214
           K+ D MP ++ VSWN+++   + +G    A  FF  M       + D+V+   +L    E
Sbjct: 193 KVFDEMPERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVCAE 252

Query: 215 LDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRML-----------EARRLFDQMPIRN 263
            +D     K   +I     +  V +L G+ + G  L            ++++FD++  RN
Sbjct: 253 TED-----KVMARIVHCYALK-VGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEIDERN 306

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMID--GYVRIAKLD-EARR 316
           V++WNA+I ++  RG+  +A  +F  M +     N V+ ++M+   G + + KL  E   
Sbjct: 307 VISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGMEVHG 366

Query: 317 LLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
              +M  + ++    ++I  Y ++     A+ IF+K+G  ++V WN MI  +A+     E
Sbjct: 367 FSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRLEYE 426

Query: 376 AINLFRQMVNK----DIVTWNTMIAG-------------YAQIRQMDDAVKIF-----EE 413
           A+ L RQM  K    + VT+  ++               +A+I ++  ++ +F      +
Sbjct: 427 AVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHARIIRVGSSLDLFVSNALTD 486

Query: 414 MGKR---------------RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           M  +               R+ VS+N LI G+ +    L++L++F  M   G + D  + 
Sbjct: 487 MYSKCGCLNLAQNVFNISVRDEVSYNILIIGYSRTNDSLESLRLFSEMRLLGMRPDIVSF 546

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
              +SACA+LA ++ G++IH L ++  +   LFV NSL+ +Y +CGRI  A  +F     
Sbjct: 547 MGVVSACANLAFIRQGKEIHGLLVRKLFHTHLFVANSLLDLYTRCGRIDLATKVFYCIQN 606

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
            DV SWN++I GY + G    AI LFE M  +GV  D V+F+ VLSACSH GL++ G K 
Sbjct: 607 KDVASWNTMILGYGMRGELDTAINLFEAMKEDGVEYDSVSFVAVLSACSHGGLIEKGRKY 666

Query: 579 FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQ 638
           F+ M ++  IEP   HYACM+DLL RAG ++EA ++++G+ I P+  IWG LLGACR+H 
Sbjct: 667 FKMMCDL-NIEPTHTHYACMVDLLGRAGLMEEAADLIRGLSIIPDTNIWGALLGACRIHG 725

Query: 639 NIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWI 698
           NI+LG  A E L EL+PQ    Y LLSNM+AEA RWDE  KVR  M+  GA+K PGCSW+
Sbjct: 726 NIELGLWAAEHLFELKPQHCGYYILLSNMYAEAERWDEANKVRELMKSRGAKKNPGCSWV 785

Query: 699 EVKNQIHTFLSGD 711
           +V + +H FL G+
Sbjct: 786 QVGDLVHAFLVGE 798



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 191/392 (48%), Gaps = 28/392 (7%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF----DKMFR 105
           N+++  Y K G    ++K+F+++ +RN++SWN++I  +    K  +A ++F    D+  R
Sbjct: 280 NALVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMR 339

Query: 106 PDLFSWALMITCYTRKGELEKAREL--FDL-LPNKEDTACWNAMVAGYAKIGNYNEAKKL 162
           P+  + + M+      G  +   E+  F L +  + D    N+++  YAK G+   A  +
Sbjct: 340 PNSVTISSMLPVLGELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTI 399

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDL 218
            + M  +NIVSWN+M++ + +N   + A +    M+ +    + V++  +L     L  L
Sbjct: 400 FNKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFL 459

Query: 219 DSAWKFFQKI----PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
           +   +   +I       ++     +   Y++ G +  A+ +F+ + +R+ V++N +I  Y
Sbjct: 460 NVGKEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFN-ISVRDEVSYNILIIGY 518

Query: 275 VQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARR----LLDQMPYKNI 326
            +     E+ RLF EM       + VS+  ++     +A + + +     L+ ++ + ++
Sbjct: 519 SRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKEIHGLLVRKLFHTHL 578

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM--- 383
               +++  Y +  R+D A ++F  I   DV  WN MI GY   G +D AINLF  M   
Sbjct: 579 FVANSLLDLYTRCGRIDLATKVFYCIQNKDVASWNTMILGYGMRGELDTAINLFEAMKED 638

Query: 384 -VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            V  D V++  +++  +    ++   K F+ M
Sbjct: 639 GVEYDSVSFVAVLSACSHGGLIEKGRKYFKMM 670



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 178/399 (44%), Gaps = 69/399 (17%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S VF  N  I    KSG    A  IF++M  +N V++N+MI+ +A+N    +A +L  QM
Sbjct: 375 SDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRLEYEAVELVRQM 434

Query: 73  PQR----NLVSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGEL 124
             +    N V++ +++        +   +E+  ++ R     DLF    +   Y++ G L
Sbjct: 435 QAKGETPNNVTFTNVLPACARLGFLNVGKEIHARIIRVGSSLDLFVSNALTDMYSKCGCL 494

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP----SKNIVSW------ 174
             A+ +F++  +  D   +N ++ GY++  +  E+ +L   M       +IVS+      
Sbjct: 495 NLAQNVFNI--SVRDEVSYNILIIGYSRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSA 552

Query: 175 -----------------------------NSMLSGYTKNGEMHLASKFFEAMEERDVVSW 205
                                        NS+L  YT+ G + LA+K F  ++ +DV SW
Sbjct: 553 CANLAFIRQGKEIHGLLVRKLFHTHLFVANSLLDLYTRCGRIDLATKVFYCIQNKDVASW 612

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFDQMPI 261
           N M+ GY    +LD+A   F+ + E  V    VS+V +LS  +  G + + R+ F  M  
Sbjct: 613 NTMILGYGMRGELDTAINLFEAMKEDGVEYDSVSFVAVLSACSHGGLIEKGRKYFKMMCD 672

Query: 262 RNV----VAWNAMIAAYVQRGQIEEAARLFIEM---PERNPVSWTTMIDGYVRIAKLDE- 313
            N+      +  M+    + G +EEAA L   +   P+ N   W  ++ G  RI    E 
Sbjct: 673 LNIEPTHTHYACMVDLLGRAGLMEEAADLIRGLSIIPDTNI--WGALL-GACRIHGNIEL 729

Query: 314 ----ARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQI 348
               A  L +  P ++      + + Y + +R DEAN++
Sbjct: 730 GLWAAEHLFELKP-QHCGYYILLSNMYAEAERWDEANKV 767



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 164/374 (43%), Gaps = 51/374 (13%)

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP--ERNPVSWTTMI--- 302
           + + A  L      R+V    ++I  Y   G    +  LF       R+   W T+I   
Sbjct: 54  KQVHAYSLLHGFLPRSVSLCASLILQYASFGHPSNSLLLFQHSVAYSRSAFLWNTLIRAN 113

Query: 303 ------DGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH- 355
                 DG+     +  A    D+  Y  +     + S +V+ ++  E + +  K+G   
Sbjct: 114 SIAGVFDGFGTYNTMVRAGVKPDECTYPFV---LKVCSDFVEVRKGREVHGVAFKLGFDG 170

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMG 415
           DV   N ++  Y  CG   +A+ +F +M  +D V+WNT+I G   +              
Sbjct: 171 DVFVGNTLLAFYGNCGLFGDAMKVFDEMPERDKVSWNTVI-GLCSL-------------- 215

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMT--QEGKKADHSTLACALSACAHLAALQL 473
                            + F+ +AL  F +M   + G + D  T+   L  CA      +
Sbjct: 216 -----------------HGFYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVCAETEDKVM 258

Query: 474 GRQIHHLAIKSGYV-NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYA 532
            R +H  A+K G +   + VGN+L+ +Y KCG  + ++ +F + D  +VISWN++I  ++
Sbjct: 259 ARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSFS 318

Query: 533 INGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLV 592
             G   +A+ +F  M+ EG+ P+ VT   +L     +GL   G+++     ++ AIE  V
Sbjct: 319 FRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGMEVHGFSLKM-AIESDV 377

Query: 593 EHYACMIDLLSRAG 606
                +ID+ +++G
Sbjct: 378 FISNSLIDMYAKSG 391



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 86/216 (39%), Gaps = 22/216 (10%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYV-NDLFVGNSLITMYAKCGRIQNAELLFKD--ADP 518
           L  C     L   +Q+H  ++  G++   + +  SLI  YA  G   N+ LLF+   A  
Sbjct: 41  LQLCTLCDTLSQTKQVHAYSLLHGFLPRSVSLCASLILQYASFGHPSNSLLLFQHSVAYS 100

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
                WN+LI   +I G   +    +  MV  GV PD  T+  VL  CS    V  G ++
Sbjct: 101 RSAFLWNTLIRANSIAG-VFDGFGTYNTMVRAGVKPDECTYPFVLKVCSDFVEVRKGREV 159

Query: 579 FECM------TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLG 632
                      +V+    L+  Y          G   +A ++   M  +     W T++G
Sbjct: 160 HGVAFKLGFDGDVFVGNTLLAFYG-------NCGLFGDAMKVFDEMPERDKVS-WNTVIG 211

Query: 633 ACRMH----QNIKLGRIAVEKLSELEPQKTSCYALL 664
            C +H    + +   R+ V     ++P   +  ++L
Sbjct: 212 LCSLHGFYEEALGFFRVMVAAKPGIQPDLVTVVSVL 247


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  357 bits (915), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 176/460 (38%), Positives = 270/460 (58%), Gaps = 28/460 (6%)

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKL 311
           AR +FD  P  + + WN+MI AY +  Q  EA  ++  M E+  +               
Sbjct: 102 ARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGGLE-------------- 147

Query: 312 DEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
                       +++     ++  Y +   +  A ++FDK+   DVV WN MI G +Q  
Sbjct: 148 ------------RDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSE 195

Query: 372 RMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFL 431
               A  +F QMV++D V+W TM+AGYA      + +++F++M  +   V+WN +I+ ++
Sbjct: 196 DPYVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKM--KLGNVTWNVIIAAYM 253

Query: 432 QNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLF 491
           QN    +A+  F  M  E    +  T    L A A+LAA + G   H   I+ G++++  
Sbjct: 254 QNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTL 313

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
           VGNSLI MYAKCG++  +E LF + D  D +SWN++++GYA++G+   AI LF  M    
Sbjct: 314 VGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQ 373

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
           V  D V+F+ VLSAC H GLV+ G K+F  M++ Y I+P +EHYACM+DLL RAG  DE 
Sbjct: 374 VQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDET 433

Query: 612 FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEA 671
              +K M ++P+AG+WG LLG+CRMH N+KLG +A++ L +LEP+  + + +LS+++A++
Sbjct: 434 LGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQS 493

Query: 672 GRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD 711
           GRW +  K R  M   G +K PGCSW+E+KN++H F  GD
Sbjct: 494 GRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGD 533



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 98/321 (30%), Positives = 166/321 (51%), Gaps = 19/321 (5%)

Query: 114 MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK---- 169
           +I  Y+   + + AR +FD  PN      WN+M+  Y +   YNEA ++   M  K    
Sbjct: 89  LINLYSLFHKCDLARSVFDSTPNPSRIL-WNSMIRAYTRSKQYNEALEMYYCMVEKGGLE 147

Query: 170 -NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI 228
            ++     ++  Y+K G++  A + F+ M +RDVV+WN M+ G  + +D   A + F ++
Sbjct: 148 RDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQM 207

Query: 229 PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFI 288
            +Q+ VSW TM++GYA NG  +E   LFD+M + NV  WN +IAAY+Q G  +EA   F 
Sbjct: 208 VDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVT-WNVIIAAYMQNGHAKEAISSFH 266

Query: 289 EMP----ERNPVSWTTMIDGYVRIAKLDEA---RRLLDQMPY-KNIAAQTAMISGYVQNK 340
           +M       N V++ +++     +A   E       + QM +  N     ++I  Y +  
Sbjct: 267 QMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCG 326

Query: 341 RMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIA 396
           ++D + ++F+++   D V WN M+ GYA  G  D AI LF  M    V  D V++ ++++
Sbjct: 327 QLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLS 386

Query: 397 GYAQIRQMDDAVKIFEEMGKR 417
                  +++  KIF  M  +
Sbjct: 387 ACRHAGLVEEGRKIFHSMSDK 407



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 186/385 (48%), Gaps = 31/385 (8%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           I S     +++T+  +I+ Y+   + + AR +F+  P  + + WNSMI  Y  + +  EA
Sbjct: 76  IVSGFKHHHSITH--LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEA 133

Query: 97  RELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYA 151
            E++  M        D+F  A ++  Y++ G+L++ARE+FD +P K D   WNAM+AG +
Sbjct: 134 LEMYYCMVEKGGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP-KRDVVAWNAMIAGLS 192

Query: 152 KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
           +  +   A+++ D M  ++ VSW +M++GY  NG      + F+ M+  + V+WN+++  
Sbjct: 193 QSEDPYVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGN-VTWNVIIAA 251

Query: 212 YVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYA-----RNGRMLEARRLFDQMP-I 261
           Y++      A   F ++  +N     V++V++L   A     R G    A     QM  +
Sbjct: 252 YMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHA--CIIQMGFL 309

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
            N +  N++I  Y + GQ++ + +LF EM  ++ VSW  M+ GY      D A  L   M
Sbjct: 310 SNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLM 369

Query: 322 PYKNIAAQT----AMISGYVQNKRMDEANQIFDKIGTH-----DVVCWNVMIKGYAQCGR 372
               +   +    +++S       ++E  +IF  +        D+  +  M+    + G 
Sbjct: 370 QESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGL 429

Query: 373 MDEAINLFRQM-VNKDIVTWNTMIA 396
            DE +   + M V  D   W  ++ 
Sbjct: 430 FDETLGFIKVMPVEPDAGVWGALLG 454



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 176/384 (45%), Gaps = 28/384 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISA-----YAKNGRVNDARKLFEQMP 73
           N  I    +S +  EA++++  M +K  +  +  I A     Y+K G +  AR++F++MP
Sbjct: 118 NSMIRAYTRSKQYNEALEMYYCMVEKGGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP 177

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDL 133
           +R++V+WN+MIAG   ++    AR +FD+M   D  SW  M+  Y   G   +  ELFD 
Sbjct: 178 KRDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDK 237

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHL 189
           +  K     WN ++A Y + G+  EA      M  +N     V++ S+L           
Sbjct: 238 M--KLGNVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFRE 295

Query: 190 ASKFFEAMEERDVVS----WNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR 245
              F   + +   +S     N ++D Y +   LD + K F ++  ++ VSW  MLSGYA 
Sbjct: 296 GMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAV 355

Query: 246 NGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPV----- 296
           +G    A  LF  M    V    V++ ++++A    G +EE  ++F  M ++  +     
Sbjct: 356 HGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLE 415

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ---NKRMDE-ANQIFDKI 352
            +  M+D   R    DE    +  MP +  A     + G  +   N ++ E A     K+
Sbjct: 416 HYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKL 475

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEA 376
              +   + V+   YAQ GR  +A
Sbjct: 476 EPRNPAHFVVLSSIYAQSGRWADA 499


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  357 bits (915), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 211/702 (30%), Positives = 361/702 (51%), Gaps = 80/702 (11%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----R 105
           N+++S + + G + DA  +F +M +R++ SWN ++ GY       EA  L+ +M     R
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL 162
           P+++++  ++       ++ + +E+   +     + D    NA++  Y K G+ + A+ L
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARML 255

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE----RDVVSWNLMLDGYVELDDL 218
            D MP ++ +SWN+M+SGY +NG      + F  M E     D+++   +      LD+ 
Sbjct: 256 FDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNE 315

Query: 219 DSAWKFFQKIPEQNVVSWVTM----LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
                    + +      ++M    +  Y+  GR+ EA  +F +M  ++VV+W AMIA+ 
Sbjct: 316 RLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASL 375

Query: 275 VQR----GQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT 330
           V        +E    + +E    + ++  +++     I  LD   RL        IA +T
Sbjct: 376 VSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRL------HEIAIKT 429

Query: 331 AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
            ++S                      V+  N +I  Y++C  +D A+ +FR +  K++V+
Sbjct: 430 GLVS---------------------HVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVS 468

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
           W ++I                  +G R N  S+ AL               +F    +E 
Sbjct: 469 WTSLI------------------LGLRINNRSFEAL---------------LFFRQMKES 495

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
            K +  TL   LSACA + AL  G++IH  A+++G   D F+ N+++ MY +CGR   A 
Sbjct: 496 MKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPAL 555

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
             F ++   DV +WN L+ GYA  G A  A++LF++M+   + PD +TFI +L ACS  G
Sbjct: 556 NQF-NSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSG 614

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
           +V  GL+ F  M   Y + P ++HYAC++D+L RAG+LD+A++ ++ M I+P+A IWG L
Sbjct: 615 MVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGAL 674

Query: 631 LGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQ 690
           L ACR+H+N++LG IA +++ E + +    Y LL N++A  G WD+V KVR  M   G  
Sbjct: 675 LNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLS 734

Query: 691 KQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
             PGCSW+E+K ++H FLSGD    ++ EI   L    ++++
Sbjct: 735 ADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMK 776



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 109/459 (23%), Positives = 197/459 (42%), Gaps = 66/459 (14%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM----PQ 74
           N  ++   + G + +A  +F +MS+++  ++N ++  YAK G  ++A  L+ +M     +
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKAREL 130
            N+ ++ S++        +   +E+   +    F  D+     +IT Y + G++  AR L
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARML 255

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP----------------------- 167
           FD +P K D   WNAM++GY + G   E  +L   M                        
Sbjct: 256 FDKMP-KRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDN 314

Query: 168 ----------------SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
                             +I   NS++  Y+  G +  A   F  ME +DVVSW  M+  
Sbjct: 315 ERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIAS 374

Query: 212 YVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFD----QMPIRN 263
            V       A + ++ +  + +    ++ V++LS  A  G +    RL +       + +
Sbjct: 375 LVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSH 434

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
           V+  N++I  Y +   ++ A  +F  +  +N VSWT++I G     +  EA     QM  
Sbjct: 435 VIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKE 494

Query: 324 KNIAAQTAMIS--------GYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
                   +IS        G +   +   A+ +   +G  D    N ++  Y +CGR   
Sbjct: 495 SMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVG-FDGFLPNAILDMYVRCGRKVP 553

Query: 376 AINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           A+N F     KD+  WN ++ GYAQ  Q   AV++F++M
Sbjct: 554 ALNQFNSQ-KKDVTAWNILLTGYAQQGQAKLAVELFDKM 591



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 157/337 (46%), Gaps = 56/337 (16%)

Query: 343 DEANQIFDKIGTHD----VVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGY 398
           DE +++++ + +      V   N ++  + + G + +A  +F +M  +D+ +WN ++ GY
Sbjct: 114 DEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGY 173

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           A+    D+A+ ++  M        W  +                         + +  T 
Sbjct: 174 AKAGCFDEALNLYHRM-------LWAEI-------------------------RPNVYTF 201

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
              L  CA ++ +  G++IH   I+ G+ +D+ VGN+LITMY KCG I NA +LF     
Sbjct: 202 PSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPK 261

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG---- 574
            D ISWN++I+GY  NG   E ++LF  M    V PD +T   V SAC    L+D     
Sbjct: 262 RDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACE---LLDNERLG 318

Query: 575 -GLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
            G+  +   +E       +     +I + S  GRL+EA  +   M+ K +   W  ++ +
Sbjct: 319 RGVHGYVVKSEFGGD---ISMNNSLIQMYSSLGRLEEAETVFSRMESK-DVVSWTAMIAS 374

Query: 634 CRMHQNIKLGRIAVE--KLSELE---PQKTSCYALLS 665
              H   KL   AVE  K+ ELE   P + +  ++LS
Sbjct: 375 LVSH---KLPFKAVETYKMMELEGILPDEITLVSVLS 408



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 114/482 (23%), Positives = 212/482 (43%), Gaps = 41/482 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ---- 74
           N  IT   K G +  A  +F +M +++ +++N+MIS Y +NG   +  +LF  M +    
Sbjct: 237 NALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVD 296

Query: 75  RNLVSWNSMIAG--YLHNDKVKEARE--LFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
            +L++  ++ +    L N+++       +    F  D+     +I  Y+  G LE+A  +
Sbjct: 297 PDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETV 356

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGE 186
           F  + +K D   W AM+A         +A +    M  + I    ++  S+LS     G 
Sbjct: 357 FSRMESK-DVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGH 415

Query: 187 MHLASKFFEAMEERDVVSW----NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG 242
           + L  +  E   +  +VS     N ++D Y +   +D+A + F+ I  +NVVSW +++ G
Sbjct: 416 LDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILG 475

Query: 243 YARNGRMLEARRLFDQM---------PIRNVVAWNAMIAAYVQRGQIE-EAARLFIEMPE 292
              N R  EA   F QM          + +V++  A I A ++  +I   A R  +    
Sbjct: 476 LRINNRSFEALLFFRQMKESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDG 535

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK- 351
             P     ++D YVR  +   A    +    K++ A   +++GY Q  +   A ++FDK 
Sbjct: 536 FLP---NAILDMYVRCGRKVPALNQFNSQK-KDVTAWNILLTGYAQQGQAKLAVELFDKM 591

Query: 352 --IGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWN-----TMIAGYAQIRQ 403
             +  H D + +  ++   ++ G + E +  F  M NK  +T N      ++    +  Q
Sbjct: 592 LELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQ 651

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGF-LQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
           +DDA    ++M  R +   W AL++   +     L  +    +  ++ K   +  L C L
Sbjct: 652 LDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNL 711

Query: 463 SA 464
            A
Sbjct: 712 YA 713



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 119/267 (44%), Gaps = 23/267 (8%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S+V   N  I    K   V+ A+++F  +S KN V++ S+I     N R  +A   F QM
Sbjct: 433 SHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM 492

Query: 73  PQR---NLVSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELE 125
            +    N V+  S+++       +   +E+     R     D F    ++  Y R G   
Sbjct: 493 KESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKV 552

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGY 181
            A   F+    K+D   WN ++ GYA+ G    A +L D M    I    +++ S+L   
Sbjct: 553 PALNQFN--SQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCAC 610

Query: 182 TKNGEMHLASKFFEAMEERDVVSWNL-----MLDGYVELDDLDSAWKFFQKIP-EQNVVS 235
           +K+G +    ++F  M+ +  ++ NL     ++D       LD A+ F Q +P   +   
Sbjct: 611 SKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAI 670

Query: 236 WVTMLSG--YARNGRMLE--ARRLFDQ 258
           W  +L+     RN  + E  A+R+F++
Sbjct: 671 WGALLNACRIHRNVELGEIAAKRVFEK 697



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 107/258 (41%), Gaps = 34/258 (13%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           L  C    A   G +++ L   S     + +GN+L++M+ + G + +A  +F      DV
Sbjct: 104 LRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDV 163

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL--- 578
            SWN L+ GYA  G   EA+ L+  M+   + P+  TF  VL  C+ V  +  G ++   
Sbjct: 164 FSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAH 223

Query: 579 ---FECMTEVYAIEPLVEHYA-C--------MIDLLSRAGRLD----------------- 609
              F   ++V     L+  Y  C        + D + +  R+                  
Sbjct: 224 VIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEG 283

Query: 610 -EAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE-PQKTSCYALLSNM 667
            E F M++ + + P+     T+  AC +  N +LGR     + + E     S    L  M
Sbjct: 284 LELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQM 343

Query: 668 HAEAGRWDEVEKVRVSME 685
           ++  GR +E E V   ME
Sbjct: 344 YSSLGRLEEAETVFSRME 361



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 86/417 (20%), Positives = 166/417 (39%), Gaps = 93/417 (22%)

Query: 19  NKKITQLGKS-GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           N  + Q+  S GR+EEA  +FS+M  K+ V++ +MI++   +           ++P + +
Sbjct: 337 NNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSH-----------KLPFKAV 385

Query: 78  VSWNSM-IAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN 136
            ++  M + G L                 PD  +   +++     G L+    L ++   
Sbjct: 386 ETYKMMELEGIL-----------------PDEITLVSVLSACACIGHLDLGIRLHEIAIK 428

Query: 137 K---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
                     N+++  Y+K    + A ++   +  KN+VSW S++ G   N     A  F
Sbjct: 429 TGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLF 488

Query: 194 FEAMEER-----------------------------DVVSWNLMLDGYVELDDLDSAWKF 224
           F  M+E                                +   +  DG++    LD   + 
Sbjct: 489 FRQMKESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRC 548

Query: 225 FQKIP--------EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIA 272
            +K+P        +++V +W  +L+GYA+ G+   A  LFD+M    +    + + +++ 
Sbjct: 549 GRKVPALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLC 608

Query: 273 AYVQRGQIEEAARLFIEMPER-----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
           A  + G + E    F  M  +     N   +  ++D   R  +LD+A   +  MP +  A
Sbjct: 609 ACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDA 668

Query: 328 AQTAMISGYVQNKRMDE-----ANQIFDK----IGTHDVVCWNVMIKGYAQCGRMDE 375
           A    +    +  R  E     A ++F+K    +G + ++C       YA CG  D+
Sbjct: 669 AIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLC-----NLYAGCGNWDK 720


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  357 bits (915), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 177/465 (38%), Positives = 273/465 (58%), Gaps = 6/465 (1%)

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQR---GQIEEAARLFIEMPERNPVSWTTMIDGYVRI 308
           A   F    ++    +N ++A Y +    G++ +A RLF  +P  + VS+ T++  +   
Sbjct: 26  AEEAFASTQLKTTTTYNCLLAGYAKASGPGRLADARRLFDSIPHPDAVSYNTLLSCHFAC 85

Query: 309 AKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
             +D A R+   MP +++ +   M+SG  +N  ++EA  +F  +   + V WN M+   A
Sbjct: 86  GDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNAVSWNAMVAARA 145

Query: 369 QCGRMDEAINLFRQMVNK-DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
             G M  A NLFR    K D + W  M++GY     +  A++ F  M   RN VSWNA++
Sbjct: 146 SSGDMGAAENLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRAM-PVRNLVSWNAVV 204

Query: 428 SGFLQNEFHLDALKIFVLMTQEG-KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
           +G+++N    DAL++F  M ++   + + STL+  L  C++L+AL  GRQ+H   +K   
Sbjct: 205 AGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPL 264

Query: 487 VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEE 546
              + VG SL++MY KCG + +A  LF +    D+++WN++I+GYA +G   +AIKLFE+
Sbjct: 265 GRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEK 324

Query: 547 MVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAG 606
           M  EGV PD +T + VL+AC H GL D G++ FE M E Y IEP V+HY+CM+DLL RAG
Sbjct: 325 MKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIEPQVDHYSCMVDLLCRAG 384

Query: 607 RLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSN 666
            L+ A  M+  M  +P+   +GTLL ACR+++N++    A  KL E +PQ    Y  L+N
Sbjct: 385 LLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLAN 444

Query: 667 MHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD 711
           ++A A RWD+V +VR  M+ +   K PG SW+E+K   H F S D
Sbjct: 445 IYAVANRWDDVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSND 489



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 94/284 (33%), Positives = 156/284 (54%), Gaps = 10/284 (3%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL 88
           GR+ +A ++F  +   + V+YN+++S +   G ++ A ++F  MP R++ SWN+M++G  
Sbjct: 55  GRLADARRLFDSIPHPDAVSYNTLLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLS 114

Query: 89  HNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVA 148
            N  ++EA  +F  M   +  SW  M+      G++  A  LF   P K D   W AMV+
Sbjct: 115 KNGAIEEAEAMFRAMPARNAVSWNAMVAARASSGDMGAAENLFRNAPEKTDAILWTAMVS 174

Query: 149 GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL- 207
           GY   GN  +A +   AMP +N+VSWN++++GY KN     A + F+ M E  +V  N  
Sbjct: 175 GYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPS 234

Query: 208 ----MLDGYVELDDLDSAWKFFQ---KIP-EQNVVSWVTMLSGYARNGRMLEARRLFDQM 259
               +L G   L  L    +  Q   K+P  +++    ++LS Y + G + +A +LFD+M
Sbjct: 235 TLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEM 294

Query: 260 PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-SWTTMI 302
             +++VAWNAMI+ Y Q G   +A +LF +M +   V  W T++
Sbjct: 295 HTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLL 338



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 154/331 (46%), Gaps = 45/331 (13%)

Query: 190 ASKFFEAMEERDVVSWNLMLDGYVELDD---LDSAWKFFQKIPEQNVVSWVTMLSGYARN 246
           A + F + + +   ++N +L GY +      L  A + F  IP  + VS+ T+LS +   
Sbjct: 26  AEEAFASTQLKTTTTYNCLLAGYAKASGPGRLADARRLFDSIPHPDAVSYNTLLSCHFAC 85

Query: 247 GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYV 306
           G +  A R+F  MP+R+V +WN M++   + G IEEA  +F  MP RN VSW  M+    
Sbjct: 86  GDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNAVSWNAMVAARA 145

Query: 307 RIAKLDEARRLLDQMPYKNIAAQ-TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIK 365
               +  A  L    P K  A   TAM+SGY+    + +A + F  +   ++V WN ++ 
Sbjct: 146 SSGDMGAAENLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVA 205

Query: 366 GYAQCGRMDEAINLFRQMVNKDIVTWN--------------------------------- 392
           GY +  R  +A+ +F+ MV   IV  N                                 
Sbjct: 206 GYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLG 265

Query: 393 -------TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVL 445
                  ++++ Y +   +DDA K+F+EM   ++ V+WNA+ISG+ Q+     A+K+F  
Sbjct: 266 RSITVGTSLLSMYCKCGDLDDACKLFDEM-HTKDIVAWNAMISGYAQHGGGRKAIKLFEK 324

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQ 476
           M  EG   D  TL   L+AC H      G Q
Sbjct: 325 MKDEGVVPDWITLLAVLTACIHTGLCDFGIQ 355



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 174/363 (47%), Gaps = 36/363 (9%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  ++ L K+G +EEA  +F  M  +N V++N+M++A A +G +  A  LF   P+
Sbjct: 103 VTSWNTMVSGLSKNGAIEEAEAMFRAMPARNAVSWNAMVAARASSGDMGAAENLFRNAPE 162

Query: 75  R-NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDL 133
           + + + W +M++GY+    V++A E F  M   +L SW  ++  Y +      A  +F  
Sbjct: 163 KTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKT 222

Query: 134 L-------PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNG 185
           +       PN    +      +  + +G   +  +    +P  ++I    S+LS Y K G
Sbjct: 223 MVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCG 282

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV-SWVTML---- 240
           ++  A K F+ M  +D+V+WN M+ GY +      A K F+K+ ++ VV  W+T+L    
Sbjct: 283 DLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLT 342

Query: 241 ----SGYARNG-----RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
               +G    G      M EA  +  Q     V  ++ M+    + G +E A  +   MP
Sbjct: 343 ACIHTGLCDFGIQCFETMQEAYNIEPQ-----VDHYSCMVDLLCRAGLLERAVNMIHSMP 397

Query: 292 -ERNPVSWTTMIDGYVRIAKLDE-----ARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
            E +P ++ T++    R+ K  E     AR+L++Q P +N  A   + + Y    R D+ 
Sbjct: 398 FEPHPSAYGTLLTA-CRVYKNLEFAEFAARKLIEQDP-QNAGAYVQLANIYAVANRWDDV 455

Query: 346 NQI 348
           +++
Sbjct: 456 SRV 458


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  357 bits (915), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 211/702 (30%), Positives = 361/702 (51%), Gaps = 80/702 (11%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----R 105
           N+++S + + G + DA  +F +M +R++ SWN ++ GY       EA  L+ +M     R
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL 162
           P+++++  ++       ++ + +E+   +     + D    NA++  Y K G+ + A+ L
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARML 255

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE----RDVVSWNLMLDGYVELDDL 218
            D MP ++ +SWN+M+SGY +NG      + F  M E     D+++   +      LD+ 
Sbjct: 256 FDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNE 315

Query: 219 DSAWKFFQKIPEQNVVSWVTM----LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
                    + +      ++M    +  Y+  GR+ EA  +F +M  ++VV+W AMIA+ 
Sbjct: 316 RLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASL 375

Query: 275 VQR----GQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT 330
           V        +E    + +E    + ++  +++     I  LD   RL        IA +T
Sbjct: 376 VSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRL------HEIAIKT 429

Query: 331 AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
            ++S                      V+  N +I  Y++C  +D A+ +FR +  K++V+
Sbjct: 430 GLVS---------------------HVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVS 468

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
           W ++I                  +G R N  S+ AL               +F    +E 
Sbjct: 469 WTSLI------------------LGLRINNRSFEAL---------------LFFRQMKES 495

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
            K +  TL   LSACA + AL  G++IH  A+++G   D F+ N+++ MY +CGR   A 
Sbjct: 496 MKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPAL 555

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
             F ++   DV +WN L+ GYA  G A  A++LF++M+   + PD +TFI +L ACS  G
Sbjct: 556 NQF-NSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSG 614

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
           +V  GL+ F  M   Y + P ++HYAC++D+L RAG+LD+A++ ++ M I+P+A IWG L
Sbjct: 615 MVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGAL 674

Query: 631 LGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQ 690
           L ACR+H+N++LG IA +++ E + +    Y LL N++A  G WD+V KVR  M   G  
Sbjct: 675 LNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLS 734

Query: 691 KQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
             PGCSW+E+K ++H FLSGD    ++ EI   L    ++++
Sbjct: 735 ADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMK 776



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 109/459 (23%), Positives = 197/459 (42%), Gaps = 66/459 (14%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM----PQ 74
           N  ++   + G + +A  +F +MS+++  ++N ++  YAK G  ++A  L+ +M     +
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKAREL 130
            N+ ++ S++        +   +E+   +    F  D+     +IT Y + G++  AR L
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARML 255

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP----------------------- 167
           FD +P K D   WNAM++GY + G   E  +L   M                        
Sbjct: 256 FDKMP-KRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDN 314

Query: 168 ----------------SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
                             +I   NS++  Y+  G +  A   F  ME +DVVSW  M+  
Sbjct: 315 ERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIAS 374

Query: 212 YVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFD----QMPIRN 263
            V       A + ++ +  + +    ++ V++LS  A  G +    RL +       + +
Sbjct: 375 LVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSH 434

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
           V+  N++I  Y +   ++ A  +F  +  +N VSWT++I G     +  EA     QM  
Sbjct: 435 VIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKE 494

Query: 324 KNIAAQTAMIS--------GYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
                   +IS        G +   +   A+ +   +G  D    N ++  Y +CGR   
Sbjct: 495 SMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVG-FDGFLPNAILDMYVRCGRKVP 553

Query: 376 AINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           A+N F     KD+  WN ++ GYAQ  Q   AV++F++M
Sbjct: 554 ALNQFNSQ-KKDVTAWNILLTGYAQQGQAKLAVELFDKM 591



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 156/337 (46%), Gaps = 56/337 (16%)

Query: 343 DEANQIFDKIGTHD----VVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGY 398
           DE +++++ + +      V   N ++  + + G + +A  +F +M  +D+ +WN ++ GY
Sbjct: 114 DEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGY 173

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           A+    D+A+ ++  M        W  +                         + +  T 
Sbjct: 174 AKAGCFDEALNLYHRM-------LWAEI-------------------------RPNVYTF 201

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
              L  CA ++ +  G++IH   I+ G+ +D+ VGN+LITMY KCG I NA +LF     
Sbjct: 202 PSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPK 261

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG---- 574
            D ISWN++I+GY  NG   E ++LF  M    V PD +T   V SAC    L+D     
Sbjct: 262 RDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACE---LLDNERLG 318

Query: 575 -GLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
            G+  +   +E       +     +I + S  GRL+EA  +   M+ K     W  ++ +
Sbjct: 319 RGVHGYVVKSEFGGD---ISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVS-WTAMIAS 374

Query: 634 CRMHQNIKLGRIAVE--KLSELE---PQKTSCYALLS 665
              H   KL   AVE  K+ ELE   P + +  ++LS
Sbjct: 375 LVSH---KLPFKAVETYKMMELEGILPDEITLVSVLS 408



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 114/482 (23%), Positives = 212/482 (43%), Gaps = 41/482 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ---- 74
           N  IT   K G +  A  +F +M +++ +++N+MIS Y +NG   +  +LF  M +    
Sbjct: 237 NALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVD 296

Query: 75  RNLVSWNSMIAG--YLHNDKVKEARE--LFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
            +L++  ++ +    L N+++       +    F  D+     +I  Y+  G LE+A  +
Sbjct: 297 PDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETV 356

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGE 186
           F  + +K D   W AM+A         +A +    M  + I    ++  S+LS     G 
Sbjct: 357 FSRMESK-DVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGH 415

Query: 187 MHLASKFFEAMEERDVVSW----NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG 242
           + L  +  E   +  +VS     N ++D Y +   +D+A + F+ I  +NVVSW +++ G
Sbjct: 416 LDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILG 475

Query: 243 YARNGRMLEARRLFDQM---------PIRNVVAWNAMIAAYVQRGQIE-EAARLFIEMPE 292
              N R  EA   F QM          + +V++  A I A ++  +I   A R  +    
Sbjct: 476 LRINNRSFEALLFFRQMKESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDG 535

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK- 351
             P     ++D YVR  +   A    +    K++ A   +++GY Q  +   A ++FDK 
Sbjct: 536 FLP---NAILDMYVRCGRKVPALNQFNSQK-KDVTAWNILLTGYAQQGQAKLAVELFDKM 591

Query: 352 --IGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWN-----TMIAGYAQIRQ 403
             +  H D + +  ++   ++ G + E +  F  M NK  +T N      ++    +  Q
Sbjct: 592 LELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQ 651

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGF-LQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
           +DDA    ++M  R +   W AL++   +     L  +    +  ++ K   +  L C L
Sbjct: 652 LDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNL 711

Query: 463 SA 464
            A
Sbjct: 712 YA 713



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 119/267 (44%), Gaps = 23/267 (8%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S+V   N  I    K   V+ A+++F  +S KN V++ S+I     N R  +A   F QM
Sbjct: 433 SHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM 492

Query: 73  PQR---NLVSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELE 125
            +    N V+  S+++       +   +E+     R     D F    ++  Y R G   
Sbjct: 493 KESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKV 552

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGY 181
            A   F+    K+D   WN ++ GYA+ G    A +L D M    I    +++ S+L   
Sbjct: 553 PALNQFN--SQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCAC 610

Query: 182 TKNGEMHLASKFFEAMEERDVVSWNL-----MLDGYVELDDLDSAWKFFQKIP-EQNVVS 235
           +K+G +    ++F  M+ +  ++ NL     ++D       LD A+ F Q +P   +   
Sbjct: 611 SKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAI 670

Query: 236 WVTMLSG--YARNGRMLE--ARRLFDQ 258
           W  +L+     RN  + E  A+R+F++
Sbjct: 671 WGALLNACRIHRNVELGEIAAKRVFEK 697



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 107/258 (41%), Gaps = 34/258 (13%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           L  C    A   G +++ L   S     + +GN+L++M+ + G + +A  +F      DV
Sbjct: 104 LRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDV 163

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL--- 578
            SWN L+ GYA  G   EA+ L+  M+   + P+  TF  VL  C+ V  +  G ++   
Sbjct: 164 FSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAH 223

Query: 579 ---FECMTEVYAIEPLVEHYA-C--------MIDLLSRAGRLD----------------- 609
              F   ++V     L+  Y  C        + D + +  R+                  
Sbjct: 224 VIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEG 283

Query: 610 -EAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE-PQKTSCYALLSNM 667
            E F M++ + + P+     T+  AC +  N +LGR     + + E     S    L  M
Sbjct: 284 LELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQM 343

Query: 668 HAEAGRWDEVEKVRVSME 685
           ++  GR +E E V   ME
Sbjct: 344 YSSLGRLEEAETVFSRME 361



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 86/417 (20%), Positives = 166/417 (39%), Gaps = 93/417 (22%)

Query: 19  NKKITQLGKS-GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           N  + Q+  S GR+EEA  +FS+M  K+ V++ +MI++   +           ++P + +
Sbjct: 337 NNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSH-----------KLPFKAV 385

Query: 78  VSWNSM-IAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN 136
            ++  M + G L                 PD  +   +++     G L+    L ++   
Sbjct: 386 ETYKMMELEGIL-----------------PDEITLVSVLSACACIGHLDLGIRLHEIAIK 428

Query: 137 K---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
                     N+++  Y+K    + A ++   +  KN+VSW S++ G   N     A  F
Sbjct: 429 TGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLF 488

Query: 194 FEAMEER-----------------------------DVVSWNLMLDGYVELDDLDSAWKF 224
           F  M+E                                +   +  DG++    LD   + 
Sbjct: 489 FRQMKESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRC 548

Query: 225 FQKIP--------EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIA 272
            +K+P        +++V +W  +L+GYA+ G+   A  LFD+M    +    + + +++ 
Sbjct: 549 GRKVPALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLC 608

Query: 273 AYVQRGQIEEAARLFIEMPER-----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
           A  + G + E    F  M  +     N   +  ++D   R  +LD+A   +  MP +  A
Sbjct: 609 ACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDA 668

Query: 328 AQTAMISGYVQNKRMDE-----ANQIFDK----IGTHDVVCWNVMIKGYAQCGRMDE 375
           A    +    +  R  E     A ++F+K    +G + ++C       YA CG  D+
Sbjct: 669 AIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLC-----NLYAGCGNWDK 720


>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
 gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
          Length = 792

 Score =  357 bits (915), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 218/755 (28%), Positives = 386/755 (51%), Gaps = 73/755 (9%)

Query: 14  YVFNQNKKITQLGKSGRVEEAIKIFSQMSQ----KNTVTYNSMISAYAKNGRVNDARKLF 69
           YV   ++ + Q G+ G + E   +   + +    +N    N +I  Y   G ++ AR  F
Sbjct: 41  YVELYDELLQQCGRLGSLAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAF 100

Query: 70  EQMPQ-RNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGEL 124
           +     + +  +N M++ Y  N     A EL+ +M      PD  ++ +++   +  G L
Sbjct: 101 QNFASIKAVACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSL 160

Query: 125 EKARELFDLL---PN--KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLS 179
            +ARE+   +   P   +++ +  NA+V  Y K G+  EA+K+ D + +++ VSW SM+S
Sbjct: 161 REAREIHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMIS 220

Query: 180 GYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
            Y  NG    A   ++ M+    + D +++   L    +L D         +I   N+ S
Sbjct: 221 SYANNGFCDEALDLYQQMDADGIQPDSITFTSALLACTKLVD---GKAIHARIVSSNMES 277

Query: 236 ---WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE 292
                 +++ YAR G +  AR+ F+++  ++VV W +++ AYVQ     EA  L+  M  
Sbjct: 278 DFVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDH 337

Query: 293 R----NPVSWTTMIDGYVRIAKLDEARRLLDQM---PYKNIAAQTAMISGYVQNKRMDEA 345
                + V++ T +     +  L E + +  ++    ++++   TA+++ Y +   +D A
Sbjct: 338 EGVHADGVTYVTALGACASLGALKEGKAIHSRVFECGFQSLVVHTALLTMYAKCGELDAA 397

Query: 346 NQIFDKI-GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK------------------ 386
             +F+++    +V CW  MI  YAQ G   EA+ L+ QMV +                  
Sbjct: 398 RAVFNRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSS 457

Query: 387 ---------------------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
                                ++   N ++  YA+   ++ A   FE  G R++ VSWNA
Sbjct: 458 SGDLEAGMKIHGHVENSELASNVAVQNALVTMYAKCGSLELAKSAFEASG-RKDLVSWNA 516

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS- 484
           +I  + Q+    +AL ++  MT +G   D  T+A +LSACA   +LQLGR+IH   +K+ 
Sbjct: 517 MIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQ 576

Query: 485 GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLF 544
            + + L V  +L+ MY +CGR++ A  +F+D    DV+SW ++ + YA  G+A + + L+
Sbjct: 577 SFRSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDVLSWTAMTSAYAQQGHADQVLDLY 636

Query: 545 EEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSR 604
            EMV+ G+ P+ +TF  +L  CSH GL+  G++ F  M   + + P+ EH+ CM+DLL R
Sbjct: 637 LEMVLHGIRPNEITFTSILVGCSHAGLLARGVECFLEMQSEHEVVPIREHFLCMVDLLGR 696

Query: 605 AGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALL 664
           +GRL +A  +V+ M  +P++  W T+LG+C+ H +    + A  ++ EL+P+ TS Y+LL
Sbjct: 697 SGRLRDAEALVESMPYQPDSVAWLTVLGSCKTHSDADTAKRAARRVKELDPENTSLYSLL 756

Query: 665 SNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
           S++   AG   E  +V++SM+  G +K PG S IE
Sbjct: 757 SSIFTAAGLPQEALEVQLSMKEMGLKKPPGQSLIE 791


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 180/528 (34%), Positives = 302/528 (57%), Gaps = 14/528 (2%)

Query: 218 LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA----WNAMIAA 273
           L  A +   +I + +   + T++    ++  + + +++   + +   V      N ++  
Sbjct: 55  LKEALQILHQIDKPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEM 114

Query: 274 YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMI 333
           Y +   + ++ +LF EMPER+  SW  +I GY ++  L EA+ L D+MP ++  + TAMI
Sbjct: 115 YAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMI 174

Query: 334 SGYVQNKRMDEANQIFDKIGTHD-------VVCWNVMIKGYAQCGRMDEAIN--LFRQMV 384
           SGYV++ R +EA ++F  +   D        V   +       C R+ + I+  + R  +
Sbjct: 175 SGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGL 234

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
           + D V W+ +   Y +   +++A  IF++M  R + V+W A+I  + Q+    +   +F 
Sbjct: 235 DSDEVVWSALSDMYGKCGSIEEARHIFDKMVDR-DIVTWTAMIDRYFQDGRRKEGFDLFA 293

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG 504
            + + G + +  T +  L+ACA+  + +LG+++H    + G+    F  ++L+ MY+KCG
Sbjct: 294 DLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCG 353

Query: 505 RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLS 564
            + +AE +FK+    D+ SW SLIAGYA NG   EAI+ FE +V  G  PD +TF+GVLS
Sbjct: 354 NMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLS 413

Query: 565 ACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNA 624
           AC+H GLVD GL  F  + E Y +    +HYAC+IDLL+R+G+ DEA  ++  M +KP+ 
Sbjct: 414 ACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDK 473

Query: 625 GIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSM 684
            +W +LLG CR+H N+KL + A E L E+EP+  + Y  L+N++A AG W EV K+R +M
Sbjct: 474 FLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTM 533

Query: 685 EGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +  G  K+PG SWI +K  +H FL GD    ++ EI   L  L+ +++
Sbjct: 534 DDRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEINEFLGKLSKRMK 581



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 131/524 (25%), Positives = 219/524 (41%), Gaps = 104/524 (19%)

Query: 109 FSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS 168
           F  A+ I C  ++  L++A ++   + +K   + ++ ++    K     + KK+   +  
Sbjct: 42  FDEAIHILC--QQNRLKEALQILHQI-DKPSASVYSTLIQSCIKSRLLQQGKKVHQHIKL 98

Query: 169 KNIVS----WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKF 224
              V      N +L  Y K   +  + K F+ M ERD+ SWN+++ GY ++  L  A   
Sbjct: 99  SGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSL 158

Query: 225 FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM-----------------------PI 261
           F K+PE++  SW  M+SGY R+ R  EA  LF  M                       P 
Sbjct: 159 FDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPC 218

Query: 262 RNV-----------------VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDG 304
             +                 V W+A+   Y + G IEEA  +F +M +R+ V+WT MID 
Sbjct: 219 LRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDR 278

Query: 305 YVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG--THDVV---- 358
           Y +  +  E   L   +    I       SG +       ANQ  +++G   H  +    
Sbjct: 279 YFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNAC----ANQTSEELGKKVHGYMTRVG 334

Query: 359 ------CWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFE 412
                   + ++  Y++CG M  A  +F++    D+ +W ++IAGYAQ  Q D+A++ FE
Sbjct: 335 FDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFE 394

Query: 413 EMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQ 472
                                           L+ + G + DH T    LSACAH   + 
Sbjct: 395 --------------------------------LLVKSGTQPDHITFVGVLSACAHAGLVD 422

Query: 473 LGRQIHHLAIKSGY----VNDLFVGNSLITMYAKCGRIQNAE-LLFKDADPVDVISWNSL 527
            G    H +IK  Y      D +    +I + A+ G+   AE ++ K +   D   W SL
Sbjct: 423 KGLDYFH-SIKEQYGLTHTADHYA--CIIDLLARSGQFDEAENIISKMSMKPDKFLWASL 479

Query: 528 IAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
           + G  I+GN   A +   E + E    +P T++ + +  +  G+
Sbjct: 480 LGGCRIHGNLKLAQRA-AEALFEIEPENPATYVTLANIYATAGM 522



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 172/398 (43%), Gaps = 74/398 (18%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF 109
           N ++  YAK   + D++KLF++MP+R+L SWN +I+GY     ++EA+ LFDKM   D F
Sbjct: 109 NRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNF 168

Query: 110 SWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYA---------KIGNYNEAK 160
           SW  MI+ Y R     +A ELF ++   +++      V+            +IG      
Sbjct: 169 SWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGY 228

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
            +   + S  +V W+++   Y K G +  A   F+ M +RD+V+W  M+D Y +      
Sbjct: 229 IMRTGLDSDEVV-WSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKE 287

Query: 221 AWKFFQKI------PEQNVVSWV---------------------------------TMLS 241
            +  F  +      P +   S V                                  ++ 
Sbjct: 288 GFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVH 347

Query: 242 GYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTM 301
            Y++ G M+ A R+F + P  ++ +W ++IA Y Q GQ +EA R F  +     V   T 
Sbjct: 348 MYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELL-----VKSGTQ 402

Query: 302 IDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG-THDVVCW 360
            D    +  L             +  A   ++     +K +D  + I ++ G TH    +
Sbjct: 403 PDHITFVGVL-------------SACAHAGLV-----DKGLDYFHSIKEQYGLTHTADHY 444

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNK-DIVTWNTMIAG 397
             +I   A+ G+ DEA N+  +M  K D   W +++ G
Sbjct: 445 ACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGG 482



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/308 (20%), Positives = 145/308 (47%), Gaps = 20/308 (6%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           + V ++++   Y K G + +AR +F++M  R++V+W +MI  Y  + + KE  +LF  + 
Sbjct: 237 DEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLL 296

Query: 105 ----RPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYN 157
               RP+ F+++ ++     +   E  +++   +        +   +A+V  Y+K GN  
Sbjct: 297 RSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMV 356

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSWNLMLDGYV 213
            A+++    P  ++ SW S+++GY +NG+   A ++FE +     + D +++  +L    
Sbjct: 357 SAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACA 416

Query: 214 ELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPIR-NVVAW 267
               +D    +F  I EQ  ++     +  ++   AR+G+  EA  +  +M ++ +   W
Sbjct: 417 HAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLW 476

Query: 268 NAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
            +++      G +   + AA    E+   NP ++ T+ + Y       E  ++   M  +
Sbjct: 477 ASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDR 536

Query: 325 NIAAQTAM 332
            +  +  +
Sbjct: 537 GVVKKPGL 544



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/202 (19%), Positives = 92/202 (45%), Gaps = 12/202 (5%)

Query: 14  YVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM- 72
           + F  +  +    K G +  A ++F +  Q +  ++ S+I+ YA+NG+ ++A + FE + 
Sbjct: 338 FSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLV 397

Query: 73  ---PQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGEL 124
               Q + +++  +++   H   V +  + F  +            +A +I    R G+ 
Sbjct: 398 KSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQF 457

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM---PSKNIVSWNSMLSGY 181
           ++A  +   +  K D   W +++ G    GN   A++  +A+     +N  ++ ++ + Y
Sbjct: 458 DEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLANIY 517

Query: 182 TKNGEMHLASKFFEAMEERDVV 203
              G     +K  + M++R VV
Sbjct: 518 ATAGMWSEVAKIRKTMDDRGVV 539


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 223/683 (32%), Positives = 366/683 (53%), Gaps = 66/683 (9%)

Query: 113 LMITCYTRKGELEKARELF-DLLPNKEDTACW--NAMVAGYAKIGNYNEAKKLLDAMPSK 169
           L++ C TR+ +L+K + +   LL     ++ +  N++V  YAK G+  +AK + +++ +K
Sbjct: 16  LLLRC-TRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESITNK 74

Query: 170 NIVSWNSMLSGYTKNGEM--HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK 227
           ++VSWN +++GY++ G +      + F+ M   + +       G        S+ + F  
Sbjct: 75  DVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGV--FTAASSSPETFGG 132

Query: 228 IPEQ----------NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR 277
           +             +V    ++++ Y + G ML+AR++FD +P RN V+W  +I+ Y   
Sbjct: 133 LQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAME 192

Query: 278 GQIEEAARLFIEMPE----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN-----IAA 328
               EA  LF  M       +   +T+++   + +  L    + +  +  KN      + 
Sbjct: 193 RMAFEAWELFXLMRREEGAHDKFIYTSVLSA-LTVPDLVHYGKQIHCLALKNGLLSIASV 251

Query: 329 QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----- 383
             A+++ Y +   +D+A + F+  G  D + W+ MI GYAQ G   EA+NLF  M     
Sbjct: 252 GNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGN 311

Query: 384 ----------VN--KDI--------VTWNTMIAGY-AQIRQMDDAVKIFEEMG------- 415
                     +N   DI        +   ++ AGY  QI  M   V ++ + G       
Sbjct: 312 KPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARK 371

Query: 416 -----KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAA 470
                K  + V W ++ISG+ QN  +  AL ++  M  E       T+A  L AC+ LAA
Sbjct: 372 GFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAA 431

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
           L+ G+QIH   IK G+  ++ +G++L TMYAKCG +++  L+F+     D+++WN++I+G
Sbjct: 432 LEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISG 491

Query: 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP 590
            + NG   +A++LFEE+      PD VTF+ VLSACSH+GLV+ G   F  M + + I P
Sbjct: 492 LSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERGKVYFRMMLDEFGIVP 551

Query: 591 LVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL 650
            VEHYACM+D+LSRAG+L E  E ++   I     +W  LLGACR ++N +LG  A EKL
Sbjct: 552 RVEHYACMVDILSRAGKLHETKEFIESATIDHGMCLWRILLGACRNYRNYELGAYAGEKL 611

Query: 651 SELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSG 710
            EL  Q++S Y LLS+++   GR D+VE+VR  M+  G  K+PGCSWIE+K+Q+H F+ G
Sbjct: 612 MELGSQESSAYILLSSIYTALGRSDDVERVRRLMKLRGVNKEPGCSWIELKSQVHVFVVG 671

Query: 711 DPKQCRTAEICNTLKTLAAQIRN 733
           D    +  +IC+ L+ L   +++
Sbjct: 672 DQIHPQIVKICSELRRLRDHMKD 694



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 125/521 (23%), Positives = 218/521 (41%), Gaps = 127/521 (24%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA--RELFDKM---- 103
           NS+++ YAK G +  A+ +FE +  +++VSWN +I GY     V  +   ELF +M    
Sbjct: 49  NSLVNLYAKCGSIVKAKLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAEN 108

Query: 104 FRPDLFSWALMITCYTRKGEL---EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
             P+  +++ + T  +   E     +A  L     N  D    ++++  Y KIG   +A+
Sbjct: 109 TLPNGHTFSGVFTAASSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDAR 168

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER-------------------D 201
           K+ D +P +N VSW +++SGY        A + F  M                      D
Sbjct: 169 KVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPD 228

Query: 202 VVSW--------------------NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
           +V +                    N ++  Y +   LD A K F+   +++ ++W  M++
Sbjct: 229 LVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMIT 288

Query: 242 GYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARL----FIEMPER 293
           GYA+ G   EA  LF  M +     +   +  +I A    G +EE  ++         E 
Sbjct: 289 GYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYEC 348

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF---- 349
                T ++D Y +   L +AR+  D +   +I   T+MISGY QN   + A  ++    
Sbjct: 349 QIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQ 408

Query: 350 -DKIGTHDVVCWNVM-------------------IKG---------------YAQCGRMD 374
            ++I  H++   +V+                   IK                YA+CG ++
Sbjct: 409 MERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLE 468

Query: 375 EAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
           +   +FR+M ++DI+TWN MI+G +Q  +   A+++FEE+  R  T              
Sbjct: 469 DGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEEL--RHGTT------------- 513

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
                            K D+ T    LSAC+H+  ++ G+
Sbjct: 514 -----------------KPDYVTFVNVLSACSHMGLVERGK 537



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 109/403 (27%), Positives = 186/403 (46%), Gaps = 74/403 (18%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR---- 105
           +S+I+ Y K G + DARK+F+ +P+RN VSW ++I+GY       EA ELF  M R    
Sbjct: 152 SSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMRREEGA 211

Query: 106 ---------------PDLFSWALMITC--------------------YTRKGELEKAREL 130
                          PDL  +   I C                    Y + G L+ A + 
Sbjct: 212 HDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKT 271

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------PSK----NIVSWNSMLSG 180
           F+L  +K+D   W+AM+ GYA+ G+ +EA  L   M      PS+     +++  S +  
Sbjct: 272 FELSGDKDDIT-WSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGA 330

Query: 181 YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
             +  ++H  S   +A  E  +     ++D Y +   L  A K F  + E ++V W +M+
Sbjct: 331 LEEGKQIHGYS--LKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMI 388

Query: 241 SGYARNG----------RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF--- 287
           SGYA+NG          RM   R +  ++ + +V+   + +AA  Q  QI      +   
Sbjct: 389 SGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFS 448

Query: 288 IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347
           +E+P  + +S  TM   Y +   L++   +  +MP ++I    AMISG  QN    +A +
Sbjct: 449 LEVPIGSALS--TM---YAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALE 503

Query: 348 IFDKI--GTH--DVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
           +F+++  GT   D V +  ++   +  G ++     FR M+++
Sbjct: 504 LFEELRHGTTKPDYVTFVNVLSACSHMGLVERGKVYFRMMLDE 546



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 142/301 (47%), Gaps = 44/301 (14%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
           +K  L SI + G      N  +T  GK G +++A+K F     K+ +T+++MI+ YA+ G
Sbjct: 241 LKNGLLSIASVG------NALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAG 294

Query: 61  RVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTR 120
             ++A  LF  M              +L+ +K             P  F++  +I   + 
Sbjct: 295 DSHEALNLFYNM--------------HLNGNK-------------PSEFTFVGVINACSD 327

Query: 121 KGELEKAREL--FDLLPNKEDTACW-NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSM 177
            G LE+ +++  + L    E    +  A+V  YAK G+  +A+K  D +   +IV W SM
Sbjct: 328 IGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSM 387

Query: 178 LSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV---- 233
           +SGY +NGE   A   +  M+   ++   L +   +      +A +  ++I  Q +    
Sbjct: 388 ISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGF 447

Query: 234 ---VSWVTMLSG-YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIE 289
              V   + LS  YA+ G + +   +F +MP R+++ WNAMI+   Q G+  +A  LF E
Sbjct: 448 SLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEE 507

Query: 290 M 290
           +
Sbjct: 508 L 508



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 11/157 (7%)

Query: 455 HSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
           H +    L  C     LQ G+ IH   +++G  + +++ NSL+ +YAKCG I  A+L+F+
Sbjct: 10  HRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFE 69

Query: 515 DADPVDVISWNSLIAGYAINGNA--TEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
                DV+SWN LI GY+  G    +  ++LF+ M  E   P+  TF GV +A S     
Sbjct: 70  SITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPET 129

Query: 573 DGGLKLFEC------MTEVYAIEPLVEHY---ACMID 600
            GGL+            +V+    L+  Y    CM+D
Sbjct: 130 FGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLD 166


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 216/646 (33%), Positives = 345/646 (53%), Gaps = 60/646 (9%)

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------PSKNIVSW--N 175
           L  A+E+F+   +      +N+++ GYA  G  NEA  L   M      P K    +  +
Sbjct: 83  LSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLS 142

Query: 176 SMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
           +      K   + +     +    +D+   N ++  Y E  +LDSA K F ++ E+NVVS
Sbjct: 143 ACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVS 202

Query: 236 WVTMLSGYARNGRMLEARRLF-----DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
           W +M+ GYAR     +A  LF     D+    N V    +I+A  +   +E   +++  +
Sbjct: 203 WTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFI 262

Query: 291 P----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEAN 346
                E N +  + ++D Y++   +D A+RL D+    N+    AM S YV+     EA 
Sbjct: 263 RNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREAL 322

Query: 347 QIF----------DKIG------------------------------THDVVCWNVMIKG 366
            +F          D+I                               + D +C N +I  
Sbjct: 323 GVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNIC-NALIDM 381

Query: 367 YAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNAL 426
           Y +C R D A  +F +M NK +VTWN+++AGY +  ++D A + FE M   +N VSWN +
Sbjct: 382 YMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETM-PEKNIVSWNTI 440

Query: 427 ISGFLQNEFHLDALKIFVLM-TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485
           ISG +Q     +A+++F  M +QEG  AD  T+    SAC HL AL L + I++   K+G
Sbjct: 441 ISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNG 500

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
              D+ +G +L+ M+++CG  ++A  +F      DV +W + I   A+ GNA  AI+LF+
Sbjct: 501 IQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFD 560

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRA 605
           +M+ +G+ PD V F+G L+ACSH GLV  G ++F  M +++ + P   HY CM+DLL RA
Sbjct: 561 DMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRA 620

Query: 606 GRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLS 665
           G L+EA ++++ M ++PN  IW +LL ACR+  N+++   A EK+  L P++T  Y LLS
Sbjct: 621 GLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLS 680

Query: 666 NMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD 711
           N++A AGRW+++ KVR+SM+  G +K PG S I+++ + H F SGD
Sbjct: 681 NVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGD 726



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 146/538 (27%), Positives = 243/538 (45%), Gaps = 87/538 (16%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
           K+    NS++  YA+ G ++ ARK+F++M +RN+VSW SMI GY   D  K+A +LF +M
Sbjct: 167 KDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRM 226

Query: 104 FR-----PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGN 155
            R     P+  +   +I+   +  +LE   +++  + N   + +    +A+V  Y K   
Sbjct: 227 VRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNA 286

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
            + AK+L D   + N+   N+M S Y + G    A   F           NLM+D  V  
Sbjct: 287 IDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVF-----------NLMMDSGVRP 335

Query: 216 DDLDSAWKFFQKIPEQNVVSWVTMLSGYA-RNG-------------------RMLEARRL 255
           D + S         +   + W     GY  RNG                   R   A R+
Sbjct: 336 DRI-SMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRI 394

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR 315
           FD+M  + VV WN+++A YV+ G+++ A   F  MPE+N VSW T+I G V+ +  +EA 
Sbjct: 395 FDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAI 454

Query: 316 RLLDQMPYK---NIAAQTAM--ISGYVQNKRMDEANQIF---DKIGTH-DVVCWNVMIKG 366
            +   M  +   N    T M   S       +D A  I+   +K G   DV     ++  
Sbjct: 455 EVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDM 514

Query: 367 YAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNAL 426
           +++CG  + A+++F  + N+D+  W   I   A     + A+++F++             
Sbjct: 515 FSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDD------------- 561

Query: 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
                              M ++G K D      AL+AC+H   +Q G++I +  +K   
Sbjct: 562 -------------------MIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHG 602

Query: 487 VN--DLFVGNSLITMYAKCGRIQNAELLFKD--ADPVDVISWNSLIAGYAINGNATEA 540
           V+  D+  G  ++ +  + G ++ A  L +D   +P DVI WNSL+A   + GN   A
Sbjct: 603 VSPEDVHYG-CMVDLLGRAGLLEEAVQLIEDMPMEPNDVI-WNSLLAACRVQGNVEMA 658



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 116/229 (50%), Gaps = 8/229 (3%)

Query: 359 CWNVMIKGYAQCGRMDEAI----NLFRQMVNKDIVTWNTMIAGYAQI---RQMDDAVKIF 411
           C          C  +DE      +L +Q ++ D+ T   ++A   ++     +  A ++F
Sbjct: 31  CTKATPSSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVF 90

Query: 412 EEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAAL 471
           E          +N+LI G+  +    +A+ +F+ M   G   D  T    LSACA   A 
Sbjct: 91  ENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAK 150

Query: 472 QLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGY 531
             G QIH L +K GY  DLFV NSL+  YA+CG + +A  +F +    +V+SW S+I GY
Sbjct: 151 GNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGY 210

Query: 532 AINGNATEAIKLFEEMVM-EGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
           A    A +A+ LF  MV  E V P+ VT + V+SAC+ +  ++ G K++
Sbjct: 211 ARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY 259



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 141/304 (46%), Gaps = 36/304 (11%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I    K  R + A +IF +MS K  VT+NS+++ Y +NG V+ A + FE MP++N+V
Sbjct: 376 NALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIV 435

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFDL 133
           SWN++I+G +     +EA E+F  M        D  +   + +     G L+ A+ ++  
Sbjct: 436 SWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYY 495

Query: 134 LPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           +     + D      +V  +++ G+   A  + +++ ++++ +W + +      G    A
Sbjct: 496 IEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERA 555

Query: 191 SKFFEAMEERDVVSWNLMLDGYVELDDLD----------------SAWKFFQKIPEQNVV 234
            + F+     D++   L  DG   +  L                 S  K     PE   V
Sbjct: 556 IELFD-----DMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPED--V 608

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAA----RLFIE 289
            +  M+    R G + EA +L + MP+  N V WN+++AA   +G +E AA    ++ + 
Sbjct: 609 HYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVL 668

Query: 290 MPER 293
            PER
Sbjct: 669 APER 672


>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 684

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 231/682 (33%), Positives = 352/682 (51%), Gaps = 85/682 (12%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF-----DKMF 104
           N+++  Y   G +NDAR+LF++MP+R++VSWN++I     N    EAR  +       + 
Sbjct: 49  NTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVI 108

Query: 105 RPDLFSWALMITCYTRKGELEKAREL----FDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
           +P+L S   ++       + E  R +      +  + + T C NA+V  Y K G+     
Sbjct: 109 KPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTC-NALVDAYGKCGSVKALW 167

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSWNLMLDGYVELD 216
           ++ +    KN VSWNS+++G    G    A   F  M     + + V+ + +L   VEL+
Sbjct: 168 QVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELE 227

Query: 217 DLDSAWK---FFQKI-PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
              +  +   F  ++  E ++    +++  YA++G   EA  +F  +  RN+V+WNAMIA
Sbjct: 228 CFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIA 287

Query: 273 AYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA 328
            Y       EA R  I+M E     N V++T ++    R+  L          P K I A
Sbjct: 288 NYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLG---------PGKEIHA 338

Query: 329 QTAMISGYVQNKRMDEANQIFDKIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD 387
                                 +IG T D+   N +I  YA+CG +  A N+F     KD
Sbjct: 339 MGV-------------------RIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNTS-RKD 378

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMT 447
            V++N +I GY++      ++ +F E                                M 
Sbjct: 379 EVSYNILIIGYSETDDCLQSLNLFSE--------------------------------MR 406

Query: 448 QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
             GKK D  +    +SACA+LAAL+ G+++H +A+++   + LFV NSL+  Y KCGRI 
Sbjct: 407 LLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRID 466

Query: 508 NAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
            A  LF      DV SWN++I GY + G    AI +FE M  + V  D V++I VLSACS
Sbjct: 467 IACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQYDLVSYIAVLSACS 526

Query: 568 HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIW 627
           H GLV+ G + F  M     +EP   HY CM+DLL RAG ++EA ++++ + I P+A IW
Sbjct: 527 HGGLVERGWQYFSEML-AQRLEPTEMHYTCMVDLLGRAGFVEEAAKLIQQLPIAPDANIW 585

Query: 628 GTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGS 687
           G LLGACR++ N++LGR A E L EL+PQ    Y LLSN++AE GRWDE  K+R  M+  
Sbjct: 586 GALLGACRIYGNVELGRRAAEHLFELKPQHCGYYILLSNIYAETGRWDEANKIRELMKSR 645

Query: 688 GAQKQPGCSWIEVKNQIHTFLS 709
           GA+K PGCSW+++ +Q+H F++
Sbjct: 646 GAKKNPGCSWVQIYDQVHAFVA 667



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 131/499 (26%), Positives = 224/499 (44%), Gaps = 95/499 (19%)

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARN 246
           M +    F+   + DV   N +L  Y     L+ A + F ++PE++VVSW T++   + N
Sbjct: 30  MEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVN 89

Query: 247 GRMLEARRLFDQMPIRNVV----------------------------------------A 266
           G   EAR  +  M +R+V+                                         
Sbjct: 90  GDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTT 149

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAK----LDEARRLLDQMP 322
            NA++ AY + G ++   ++F E  E+N VSW ++I+G     +    L+  R ++D   
Sbjct: 150 CNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGA 209

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFD---KIGTH-DVVCWNVMIKGYAQCGRMDEAIN 378
             N    ++++   V+ +      +I     ++GT  D+   N +I  YA+ G   EA  
Sbjct: 210 QPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEAST 269

Query: 379 LFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
           +F  +  ++IV+WN MIA YA                                 N   L+
Sbjct: 270 IFHNLDRRNIVSWNAMIANYA--------------------------------LNRLPLE 297

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
           A++  + M + G+  +  T    L ACA L  L  G++IH + ++ G  +DLFV NSLI 
Sbjct: 298 AIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLID 357

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           MYAKCG + +A  +F  +   D +S+N LI GY+   +  +++ LF EM + G  PD V+
Sbjct: 358 MYAKCGCLHSARNVFNTSRK-DEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVS 416

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYA------CMIDLLSRAGRLDEAF 612
           F+GV+SAC+++  +  G        EV+ +      Y+       ++D  ++ GR+D A 
Sbjct: 417 FVGVISACANLAALKQG-------KEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIAC 469

Query: 613 EMVKGMKIKPNAGIWGTLL 631
            +   +  K  A  W T++
Sbjct: 470 RLFNQILFKDVAS-WNTMI 487



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 105/449 (23%), Positives = 195/449 (43%), Gaps = 68/449 (15%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V   N  +   GK G V+   ++F++  +KN V++NS+I+  A  GR  DA   F  M
Sbjct: 145 SQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMM 204

Query: 73  ----PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGEL 124
                Q N V+ +S++   +  +  K  +E+     R     D+F    +I  Y + G  
Sbjct: 205 IDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHS 264

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYA----------------KIGNYNEAKKLLDAMP- 167
            +A  +F  L ++ +   WNAM+A YA                + G    A    + +P 
Sbjct: 265 TEASTIFHNL-DRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPA 323

Query: 168 ----------------------SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW 205
                                 + ++   NS++  Y K G +H A   F     +D VS+
Sbjct: 324 CARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNT-SRKDEVSY 382

Query: 206 NLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
           N+++ GY E DD   +   F ++     + +VVS+V ++S  A N   L+  +    + +
Sbjct: 383 NILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACA-NLAALKQGKEVHGVAL 441

Query: 262 RN-----VVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
           RN     +   N+++  Y + G+I+ A RLF ++  ++  SW TMI GY  I +L+ A  
Sbjct: 442 RNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAIS 501

Query: 317 LLDQM----PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV----VCWNVMIKGYA 368
           + + M       ++ +  A++S       ++   Q F ++    +    + +  M+    
Sbjct: 502 MFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQRLEPTEMHYTCMVDLLG 561

Query: 369 QCGRMDEAINLFRQM-VNKDIVTWNTMIA 396
           + G ++EA  L +Q+ +  D   W  ++ 
Sbjct: 562 RAGFVEEAAKLIQQLPIAPDANIWGALLG 590



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 130/288 (45%), Gaps = 22/288 (7%)

Query: 370 CGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
           C  M+    +F+   + D+   NT++  Y     ++DA ++F+EM   R+ VSWN +I  
Sbjct: 27  CKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEM-PERDVVSWNTIIGL 85

Query: 430 FLQNEFHLDALKIFVLMTQEGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
              N  + +A   +  M      K +  ++   L   A L   ++ R+IH  ++K G  +
Sbjct: 86  LSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDS 145

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
            +   N+L+  Y KCG ++    +F +    + +SWNS+I G A  G   +A+  F  M+
Sbjct: 146 QVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMI 205

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI------EPLVEHYACMIDLL 602
             G  P+ VT   +L       LV+  L+ F+   E++        E  +     +ID+ 
Sbjct: 206 DAGAQPNSVTISSILPV-----LVE--LECFKAGKEIHGFSMRMGTETDIFIANSLIDMY 258

Query: 603 SRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL 650
           +++G   EA  +   +  + N   W  ++       N  L R+ +E +
Sbjct: 259 AKSGHSTEASTIFHNLD-RRNIVSWNAMIA------NYALNRLPLEAI 299



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
           M + G + D  T    L  C+    +  G ++H +  K G+  D++VGN+L+ +Y  CG 
Sbjct: 1   MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGF 60

Query: 506 IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV-APDPVTFIGVL 563
           + +A  LF +    DV+SWN++I   ++NG+ TEA   +  M++  V  P+ V+ I +L
Sbjct: 61  LNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLL 119



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S++F  N  +    K GR++ A ++F+Q+  K+  ++N+MI  Y   G +  A  +FE M
Sbjct: 447 SHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAM 506

Query: 73  ----PQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGEL 124
                Q +LVS+ ++++   H   V+   + F +M      P    +  M+    R G +
Sbjct: 507 RDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQRLEPTEMHYTCMVDLLGRAGFV 566

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYN----EAKKLLDAMPSKNIVSWNSMLSG 180
           E+A +L   LP   D   W A++      GN       A+ L +  P      +  +LS 
Sbjct: 567 EEAAKLIQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQH--CGYYILLSN 624

Query: 181 -YTKNGEMHLASKFFEAMEER 200
            Y + G    A+K  E M+ R
Sbjct: 625 IYAETGRWDEANKIRELMKSR 645


>gi|302143938|emb|CBI23043.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 189/518 (36%), Positives = 293/518 (56%), Gaps = 18/518 (3%)

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQM------PIRNVVAWNAMIAAYVQRGQIEEAAR 285
           N+VSW  ++ G+A+NG   EA  L  +M      P    +A      A +Q   + +   
Sbjct: 10  NLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNLGKEIH 69

Query: 286 LFIEMPE--RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMD 343
            ++       NP     ++D Y R A +  A ++      KN+ +   MI GY +N  ++
Sbjct: 70  GYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVE 129

Query: 344 EANQIFDKIGT--HDVVCWNVMIKGYA----QCGRMDEAINLFRQMVNKDIVTWNTMIAG 397
           +A ++FD++     D + WN MI GYA    +C  +  A   F  +  +D  TWN +I+G
Sbjct: 130 KAKELFDQMELVGKDTISWNSMISGYADNLLKCEDLKAAQLAFDGVTERDTATWNVLISG 189

Query: 398 YAQIRQMDDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
           YA   Q+++   + ++M   G   N  +WN +ISG ++N  +  AL++F  M     + D
Sbjct: 190 YACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPD 249

Query: 455 HSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
             T+   L ACA LA +  G+Q+H  +I+ GY  D+ +G +L+ MYAKCG I++A  ++ 
Sbjct: 250 IYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYN 309

Query: 515 DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574
                +++S N+++  YA++G+  E I LF  M+  G  PD VTF+ VLS+C H G V+ 
Sbjct: 310 RISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVET 369

Query: 575 GLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGAC 634
           G + F+ MT  Y + P ++HY C++DLLSRAGRLDEA+E+VK +  KP++ +WG LLG C
Sbjct: 370 GHEFFDLMT-YYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGC 428

Query: 635 RMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPG 694
            +  N++LG IA E L ELEP  T  Y LL+N++A AGRW ++++ R  ++  G  K PG
Sbjct: 429 VIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGMHKSPG 488

Query: 695 CSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           CSWIE +  IH FLS D    +T +I  TL  L   +R
Sbjct: 489 CSWIEDREDIHVFLSCDKSHEKTEDIYTTLDNLNTHMR 526



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 113/430 (26%), Positives = 199/430 (46%), Gaps = 33/430 (7%)

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELF 131
           NLVSW+++I G+  N   KEA EL  +M    F P+  + A ++    R   L   +E+ 
Sbjct: 10  NLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNLGKEIH 69

Query: 132 DLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
             +       +    N +V  Y +  +   A K+      KN+VS+N+M+ GY +NG + 
Sbjct: 70  GYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVE 129

Query: 189 LASKFFEAME--ERDVVSWNLMLDGY----VELDDLDSAWKFFQKIPEQNVVSWVTMLSG 242
            A + F+ ME   +D +SWN M+ GY    ++ +DL +A   F  + E++  +W  ++SG
Sbjct: 130 KAKELFDQMELVGKDTISWNSMISGYADNLLKCEDLKAAQLAFDGVTERDTATWNVLISG 189

Query: 243 YARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PV 296
           YA   ++   + L  +M       NV  WN +I+ +V+ G  E A RLF EM   +  P 
Sbjct: 190 YACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPD 249

Query: 297 SWTT--MIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD 350
            +T   ++    R+A +   +++    + Q    ++    A++  Y +   +  A Q+++
Sbjct: 250 IYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYN 309

Query: 351 KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVTWNTMIAGYAQIRQMDD 406
           +I   ++V  N M+  YA  G  DE I LFR M+      D VT+ ++++       ++ 
Sbjct: 310 RISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVET 369

Query: 407 AVKIFEEMGKRRNTVSWN--ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSA 464
             + F+ M     T S      I   L     LD  + + L+ +  +K D       L  
Sbjct: 370 GHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLD--EAYELVKKIPRKPDSVMWGALLGG 427

Query: 465 CAHLAALQLG 474
           C     ++LG
Sbjct: 428 CVIWGNVELG 437



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/428 (24%), Positives = 204/428 (47%), Gaps = 28/428 (6%)

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS----KNIVSWNSMLSGYTKNGEMHLAS 191
           +K +   W+A++ G+A+ G   EA +LL  M +     N  +  S+L    +   ++L  
Sbjct: 7   SKPNLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNLGK 66

Query: 192 KFFEAMEERDVVSWNLMLDGYVEL----DDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
           +    +     +S   +++G V++     D+ SA K F     +NVVS+ TM+ GY  NG
Sbjct: 67  EIHGYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENG 126

Query: 248 RMLEARRLFDQMPI--RNVVAWNAMIAAYVQ---RGQIEEAARL-FIEMPERNPVSWTTM 301
            + +A+ LFDQM +  ++ ++WN+MI+ Y     + +  +AA+L F  + ER+  +W  +
Sbjct: 127 NVEKAKELFDQMELVGKDTISWNSMISGYADNLLKCEDLKAAQLAFDGVTERDTATWNVL 186

Query: 302 IDGYVRIAKLDEARRLLDQMP----YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH-- 355
           I GY    +L+  + L+ +M       N+     +ISG+V+N   + A ++F ++ T   
Sbjct: 187 ISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSL 246

Query: 356 --DVVCWNVMIKGYAQCGRMDEAINL----FRQMVNKDIVTWNTMIAGYAQIRQMDDAVK 409
             D+    +++   A+   +     +     RQ    D+     ++  YA+   +  A++
Sbjct: 247 RPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQ 306

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           ++  +    N VS NA+++ +  +    + + +F  M   G + DH T    LS+C H  
Sbjct: 307 VYNRI-SNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAG 365

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA-ELLFKDADPVDVISWNSLI 528
           A++ G +   L         L     ++ + ++ GR+  A EL+ K     D + W +L+
Sbjct: 366 AVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALL 425

Query: 529 AGYAINGN 536
            G  I GN
Sbjct: 426 GGCVIWGN 433



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 165/352 (46%), Gaps = 32/352 (9%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
            N    N ++  Y +   +  A K+F     +N+VS+N+MI GY  N  V++A+ELFD+M
Sbjct: 79  SNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQM 138

Query: 104 --FRPDLFSWALMITCYT----RKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYN 157
                D  SW  MI+ Y     +  +L+ A+  FD +  + DTA WN +++GYA      
Sbjct: 139 ELVGKDTISWNSMISGYADNLLKCEDLKAAQLAFDGVTER-DTATWNVLISGYACCNQLE 197

Query: 158 EAKKLLDAMPS----KNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLML 209
             + L+  M       N+ +WN ++SG+ +NG   LA + F  M+      D+ +  ++L
Sbjct: 198 NIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIIL 257

Query: 210 DGYVELDDLDSAWKF----FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
                L  +    +      ++  E +V     ++  YA+ G +  A ++++++   N+V
Sbjct: 258 PACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLV 317

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEM------PERNPVSWTTMIDGYVRIAKLDEARRLLD 319
           + NAM+ AY   G  +E   LF  M      P+   V++ +++   V    ++      D
Sbjct: 318 SQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDH--VTFLSVLSSCVHAGAVETGHEFFD 375

Query: 320 QMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIGTH-DVVCWNVMIKG 366
            M Y N+       T ++    +  R+DEA ++  KI    D V W  ++ G
Sbjct: 376 LMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGG 427



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 8/142 (5%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL---- 77
           +    K G ++ A+++++++S  N V+ N+M++AYA +G  ++   LF  M         
Sbjct: 292 VDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDH 351

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDL 133
           V++ S+++  +H   V+   E FD M      P L  +  ++   +R G L++A EL   
Sbjct: 352 VTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKK 411

Query: 134 LPNKEDTACWNAMVAGYAKIGN 155
           +P K D+  W A++ G    GN
Sbjct: 412 IPRKPDSVMWGALLGGCVIWGN 433


>gi|108710611|gb|ABF98406.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 787

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 205/623 (32%), Positives = 342/623 (54%), Gaps = 20/623 (3%)

Query: 109 FSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS 168
           F++  M+  + + G++  AR LFD +P +     +  MV    K G+  +A +L    P 
Sbjct: 149 FAYDFMVREHVKAGDIVSARRLFDGMPER-SVVSYTTMVDALMKRGSVRDAVELYRQCPL 207

Query: 169 KNIVSWNSMLSGYTKNGEMHLASKFFEAM-------EERDVVSWNLMLDGYVELDDLDSA 221
            ++  + +M++G+  N     A   F  M        E  +VS      G  E D   S 
Sbjct: 208 CSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSI 267

Query: 222 WKFFQK--IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ 279
                K  + ++N+    ++++ Y R G    ARR+FD+M +R+VV+W A++  Y + G 
Sbjct: 268 VGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGD 327

Query: 280 IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM----PYKNIAAQTAMISG 335
           +E A R+  EMPERN VSW T++  + +     EA  L  QM       NI+  ++++  
Sbjct: 328 LEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGA 387

Query: 336 --YVQNKRMDEA--NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTW 391
              +Q+ R      NQ      +++V   + +I  Y +C ++ +A  +F  +  K+IV W
Sbjct: 388 CASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCW 447

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
           N++I+GY+   +M +A ++F++M   RN  SWN++ISG+ QN   +DALK F  M   G+
Sbjct: 448 NSLISGYSNNSKMVEAEELFKKM-PARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQ 506

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL 511
                T +  L ACA L +L++G+ +H   IK G    +FVG +L  MYAK G + +++ 
Sbjct: 507 SPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKR 566

Query: 512 LFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
           +F +    + ++W ++I G A NG A E+I LFE+M+  G+ P+  TF+ +L ACSH GL
Sbjct: 567 VFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGL 626

Query: 572 VDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           V+  +  FE M +   I P  +HY CM+D+L+RAG L EA +++  ++ K  A  W  LL
Sbjct: 627 VEHAMHYFE-MMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALL 685

Query: 632 GACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQK 691
            AC +++N ++G  A ++L EL+   T+ Y LLSNM+A  G+W +  ++R+ M+G   +K
Sbjct: 686 SACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKK 745

Query: 692 QPGCSWIEVKNQIHTFLSGDPKQ 714
             GCSW++++ Q   F S + K 
Sbjct: 746 DGGCSWVQIRGQYQAFFSWETKH 768



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 142/558 (25%), Positives = 258/558 (46%), Gaps = 65/558 (11%)

Query: 39  SQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARE 98
           S +   +   Y+ M+  + K G +  AR+LF+ MP+R++VS+ +M+   +    V++A E
Sbjct: 141 SVVGAASPFAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVE 200

Query: 99  LFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL------PNKEDTACWNAMVAGYAK 152
           L+ +     +  +  MI  +      + A  +F  +      PN+       +++     
Sbjct: 201 LYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLV---SVIKACIG 257

Query: 153 IGNYNEAKKLLD-AMPS----KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL 207
            G ++ A  ++  AM S    KN+   NS+++ Y + G+   A + F+ ME RDVVSW  
Sbjct: 258 AGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTA 317

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM-------- 259
           +LD Y EL DL+ A +   ++PE+N VSW T+++ + + G   EA  L+ QM        
Sbjct: 318 LLDVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPN 377

Query: 260 ---------------PIR----------------NVVAWNAMIAAYVQRGQIEEAARLFI 288
                           +R                NV   +A+I  Y +  Q+ +A  +F 
Sbjct: 378 ISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFY 437

Query: 289 EMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQI 348
            +P++N V W ++I GY   +K+ EA  L  +MP +N+A+  ++ISGY QN++  +A + 
Sbjct: 438 SLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKS 497

Query: 349 FDKI-----GTHDVVCWNVMIKGYAQC----GRMDEAINLFRQMVNKDIVTWNTMIAGYA 399
           F  +        ++   +V++   + C    G+M  A  + +  + + I     +   YA
Sbjct: 498 FHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHA-KIIKLGIKESIFVGTALSDMYA 556

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
           +   +D + ++F EM K RN V+W A+I G  +N F  +++ +F  M   G   +  T  
Sbjct: 557 KSGDLDSSKRVFYEMPK-RNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFL 615

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE-LLFKDADP 518
             L AC+H   ++       +    G          ++ + A+ G +  AE LL K    
Sbjct: 616 AILFACSHSGLVEHAMHYFEMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESK 675

Query: 519 VDVISWNSLIAGYAINGN 536
            +  SW +L++   I  N
Sbjct: 676 SEANSWAALLSACNIYRN 693



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 138/583 (23%), Positives = 265/583 (45%), Gaps = 111/583 (19%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K+G +  A ++F  M +++ V+Y +M+ A  K G V DA +L+ Q P  ++  + +MIAG
Sbjct: 160 KAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAG 219

Query: 87  YLHNDKVKEARELFDKMFRPDL-------------------FSWAL-------------- 113
           ++ N+  K+A  +F +M    +                   F  A+              
Sbjct: 220 FVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDK 279

Query: 114 -------MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
                  +IT Y RKG+ + AR +FD +  + D   W A++  YA++G+   A+++LD M
Sbjct: 280 NLGVRNSLITLYLRKGDADAARRMFDEMEVR-DVVSWTALLDVYAELGDLEGARRVLDEM 338

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAME---------------------------- 198
           P +N VSW ++++ + + G    A   +  M                             
Sbjct: 339 PERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGR 398

Query: 199 -----------ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
                        +V   + ++D Y +   L  A   F  +P++N+V W +++SGY+ N 
Sbjct: 399 KIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNS 458

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM--PERNP--VSWTTMID 303
           +M+EA  LF +MP RNV +WN++I+ Y Q  Q  +A + F  M    ++P  +++++++ 
Sbjct: 459 KMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLL 518

Query: 304 GYVRIAKLDEAR----RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
               +  L+  +    +++     ++I   TA+   Y ++  +D + ++F ++   + V 
Sbjct: 519 ACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVA 578

Query: 360 WNVMIKGYAQCGRMDEAINLFRQMVNKDIV----TWNTMIAGYAQIRQMDDAVKIFEEM- 414
           W  MI+G A+ G  +E+I LF  M++  I     T+  ++   +    ++ A+  FE M 
Sbjct: 579 WTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQ 638

Query: 415 --GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQ 472
             G       +  ++   L    HL   +  +L  +   K++ ++ A  LSAC      +
Sbjct: 639 ACGISPKAKHYTCMVD-VLARAGHLAEAEDLLLKIES--KSEANSWAALLSACNIYRNKE 695

Query: 473 LG----RQIHHLAI--KSGYVNDLFVGNSLITMYAKCGRIQNA 509
           +G    +++  L     +GYV        L  MYA CG+ ++A
Sbjct: 696 MGERAAKRLQELDKDNTAGYV-------LLSNMYASCGKWKDA 731



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 120/469 (25%), Positives = 224/469 (47%), Gaps = 38/469 (8%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           +N  IT   + G  + A ++F +M  ++ V++ +++  YA+ G +  AR++ ++MP+RN 
Sbjct: 284 RNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNE 343

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDL 133
           VSW +++A +      KEA  L+ +M     RP++  ++ ++       +L   R++ + 
Sbjct: 344 VSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHN- 402

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDA------MPSKNIVSWNSMLSGYTKNGEM 187
                  AC N +    A I  Y + K+L DA      +P KNIV WNS++SGY+ N +M
Sbjct: 403 --QTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKM 460

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI------PEQNVVSWVTMLS 241
             A + F+ M  R+V SWN ++ GY +      A K F  +      P +   S V +  
Sbjct: 461 VEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLAC 520

Query: 242 GYARN---GRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
               +   G+M+ A+ +  ++ I+ ++    A+   Y + G ++ + R+F EMP+RN V+
Sbjct: 521 ASLCSLEMGKMVHAKII--KLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVA 578

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAA--QT--AMISGYVQNKRMDEANQIFDKIG 353
           WT MI G       +E+  L + M    I    QT  A++     +  ++ A   F+ + 
Sbjct: 579 WTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQ 638

Query: 354 THDVVC----WNVMIKGYAQCGRMDEAINLFRQMVNK-DIVTWNTMIAG---YAQIRQMD 405
              +      +  M+   A+ G + EA +L  ++ +K +  +W  +++    Y      +
Sbjct: 639 ACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGE 698

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
            A K  +E+ K  NT  +  L + +       DA ++ +LM     K D
Sbjct: 699 RAAKRLQELDK-DNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKD 746



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 151/324 (46%), Gaps = 23/324 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  +  I    K  ++ +A  IF  + QKN V +NS+IS Y+ N ++ +A +LF++MP 
Sbjct: 413 VFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPA 472

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPD------LFSWALMIT---CYTRKGELE 125
           RN+ SWNS+I+GY  N +  +A + F  M           FS  L+     C    G++ 
Sbjct: 473 RNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMV 532

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
            A+ +   L  KE      A+   YAK G+ + +K++   MP +N V+W +M+ G  +NG
Sbjct: 533 HAKII--KLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLAENG 590

Query: 186 EMHLASKFFEAMEERDVV----SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS----WV 237
               +   FE M    +     ++  +L        ++ A  +F+ +    +      + 
Sbjct: 591 FAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQACGISPKAKHYT 650

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVV-AWNAMIAA---YVQRGQIEEAARLFIEMPER 293
            M+   AR G + EA  L  ++  ++   +W A+++A   Y  +   E AA+   E+ + 
Sbjct: 651 CMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGERAAKRLQELDKD 710

Query: 294 NPVSWTTMIDGYVRIAKLDEARRL 317
           N   +  + + Y    K  +A  +
Sbjct: 711 NTAGYVLLSNMYASCGKWKDAAEM 734



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 125/282 (44%), Gaps = 39/282 (13%)

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIF 411
           +G      ++ M++ + + G +  A  LF  M  + +V++ TM+    +   + DAV+++
Sbjct: 143 VGAASPFAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELY 202

Query: 412 EEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAAL 471
            +     +   + A+I+GF+ NE   DAL +F  M   G   +  TL   + AC      
Sbjct: 203 RQC-PLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEF 261

Query: 472 QLGRQIHHLAIKSGYVN-DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
            L   I  LA+KS  ++ +L V NSLIT+Y + G    A  +F + +  DV+SW +L+  
Sbjct: 262 DLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDV 321

Query: 531 YA-------------------------------INGNATEAIKLFEEMVMEGVAPDPVTF 559
           YA                                 GNA EA+ L+ +M+ +G  P+   F
Sbjct: 322 YAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCF 381

Query: 560 IGVLSACSHVGLVDGGLKL------FECMTEVYAIEPLVEHY 595
             VL AC+ +  +  G K+        C   V+    L++ Y
Sbjct: 382 SSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMY 423


>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 619

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 197/560 (35%), Positives = 319/560 (56%), Gaps = 23/560 (4%)

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
             +E  D V+ +  +     L  +  A + F K  + N  +W  M  GYA+    L+   
Sbjct: 48  HGLEGNDYVTPSF-ITACARLGGIRRARRVFDKTAQPNGATWNAMFRGYAQANCHLDVVV 106

Query: 255 LFDQM----PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAK 310
           LF +M       N   +  ++ +       +E   +   + +R   S T +    + +  
Sbjct: 107 LFARMHRAGASPNCFTFPMVVKSCATANAAKEGEEVHCVVAKRGFKSNTFVGCALIHMYS 166

Query: 311 LD------EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMI 364
           L       +A ++  +M  KN+ A TA+++ +V  + M  A ++FD     DVV WNV++
Sbjct: 167 LRGGVFVADAYKVFAEMRDKNVFAWTAIVAAHVACRDMVSARRLFDLAPQRDVVLWNVVV 226

Query: 365 KGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
            GY + G M  A  LF +M ++D+++WNT+++GYA   +++  VK+FEEM   RN  SWN
Sbjct: 227 SGYIELGDMVAARELFDRMPDRDVMSWNTVLSGYATNGEVESFVKLFEEM-PVRNVYSWN 285

Query: 425 ALISGFLQNEFHLDALKIF----VLMTQEGKKADHS-------TLACALSACAHLAALQL 473
            LI G+++N    +AL+ F    VL+  EGK+           T+   L+AC+ L  L++
Sbjct: 286 GLIGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEM 345

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           G+ +H  A   GY  +LFVGN+LI MYAKCG I+ A  +F   D  D+I+WN++I G A+
Sbjct: 346 GKWVHVYAESIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINGLAM 405

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVE 593
           +G+  +A+ LFE M   G  PD VTF+G+LSAC+H+GLV  GL  F+ M + Y+I P +E
Sbjct: 406 HGHVADALSLFERMKRAGERPDGVTFVGILSACTHMGLVRNGLLHFQSMVDDYSIVPQIE 465

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653
           HY CM+DLL RAG +D+A ++V+ M ++P+A IW  LLGACRM++N+++  +A+++L EL
Sbjct: 466 HYGCMVDLLGRAGLIDKAVDIVRKMPMEPDAVIWAALLGACRMYKNVEMAELALQRLIEL 525

Query: 654 EPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPK 713
           EP     + ++SN++ + GR  +V +++V+M  +G +K PGCS I   + +  F S D +
Sbjct: 526 EPNNPGNFVMVSNIYKDLGRSQDVARLKVAMRDTGFRKVPGCSVIGCNDSMVEFYSLDER 585

Query: 714 QCRTAEICNTLKTLAAQIRN 733
              T  I   L+ L   +R+
Sbjct: 586 HPETDSIYRALQGLTILLRS 605



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/461 (25%), Positives = 218/461 (47%), Gaps = 68/461 (14%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKE 95
           +I +   + N     S I+A A+ G +  AR++F++  Q N  +WN+M  GY   +   +
Sbjct: 44  QIVTHGLEGNDYVTPSFITACARLGGIRRARRVFDKTAQPNGATWNAMFRGYAQANCHLD 103

Query: 96  ARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVA 148
              LF +M R    P+ F++ +++         ++  E+  ++     K +T    A++ 
Sbjct: 104 VVVLFARMHRAGASPNCFTFPMVVKSCATANAAKEGEEVHCVVAKRGFKSNTFVGCALIH 163

Query: 149 GYAKIGNY--NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN 206
            Y+  G     +A K+   M  KN+ +W ++++ +    +M  A + F+   +RDVV WN
Sbjct: 164 MYSLRGGVFVADAYKVFAEMRDKNVFAWTAIVAAHVACRDMVSARRLFDLAPQRDVVLWN 223

Query: 207 LMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA 266
           +++ GY+EL D+ +A + F ++P+++V+SW T+LSGYA NG +    +LF++MP+RNV +
Sbjct: 224 VVVSGYIELGDMVAARELFDRMPDRDVMSWNTVLSGYATNGEVESFVKLFEEMPVRNVYS 283

Query: 267 WNAMIAAYVQRGQIEEAARLF------IEMPERNPVSWTTMIDGYVRIAKLDEARRLLD- 319
           WN +I  YV+ G  +EA   F      +E   +       + + Y  +A L    RL D 
Sbjct: 284 WNGLIGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDL 343

Query: 320 -----------QMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367
                       + YK N+    A+I  Y +   +++A  +FD +   D++ WN +I G 
Sbjct: 344 EMGKWVHVYAESIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINGL 403

Query: 368 AQCGRMDEAINLFRQM------------------------VNKDIVTWNTMIAGYAQIRQ 403
           A  G + +A++LF +M                        V   ++ + +M+  Y+ + Q
Sbjct: 404 AMHGHVADALSLFERMKRAGERPDGVTFVGILSACTHMGLVRNGLLHFQSMVDDYSIVPQ 463

Query: 404 ----------------MDDAVKIFEEMGKRRNTVSWNALIS 428
                           +D AV I  +M    + V W AL+ 
Sbjct: 464 IEHYGCMVDLLGRAGLIDKAVDIVRKMPMEPDAVIWAALLG 504



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 167/334 (50%), Gaps = 31/334 (9%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHN 90
           V +A K+F++M  KN   + ++++A+     +  AR+LF+  PQR++V WN +++GY+  
Sbjct: 173 VADAYKVFAEMRDKNVFAWTAIVAAHVACRDMVSARRLFDLAPQRDVVLWNVVVSGYIEL 232

Query: 91  DKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGY 150
             +  ARELFD+M   D+ SW  +++ Y   GE+E   +LF+ +P + +   WN ++ GY
Sbjct: 233 GDMVAARELFDRMPDRDVMSWNTVLSGYATNGEVESFVKLFEEMPVR-NVYSWNGLIGGY 291

Query: 151 AKIGNYNEA----KKLL-----------DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
            + G + EA    K++L           D +   N  +  ++L+  ++ G++ +  K+  
Sbjct: 292 VRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMG-KWVH 350

Query: 196 AMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRML 250
              E      ++   N ++D Y +   ++ A   F  +  +++++W T+++G A +G + 
Sbjct: 351 VYAESIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINGLAMHGHVA 410

Query: 251 EARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-----SWTTM 301
           +A  LF++M       + V +  +++A    G +      F  M +   +      +  M
Sbjct: 411 DALSLFERMKRAGERPDGVTFVGILSACTHMGLVRNGLLHFQSMVDDYSIVPQIEHYGCM 470

Query: 302 IDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG 335
           +D   R   +D+A  ++ +MP +  A   A + G
Sbjct: 471 VDLLGRAGLIDKAVDIVRKMPMEPDAVIWAALLG 504



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 170/361 (47%), Gaps = 40/361 (11%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL 88
           G +  A ++F +M  ++ +++N+++S YA NG V    KLFE+MP RN+ SWN +I GY+
Sbjct: 233 GDMVAARELFDRMPDRDVMSWNTVLSGYATNGEVESFVKLFEEMPVRNVYSWNGLIGGYV 292

Query: 89  HNDKVKEARELFDKMF---------------RPDLFSWALMITCYTRKGELEKARELF-- 131
            N   KEA E F +M                 P+ ++   ++T  +R G+LE  + +   
Sbjct: 293 RNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKWVHVY 352

Query: 132 -DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
            + +  K +    NA++  YAK G   +A  + D +  K+I++WN++++G   +G +  A
Sbjct: 353 AESIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINGLAMHGHVADA 412

Query: 191 SKFFEAM----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ-----NVVSWVTMLS 241
              FE M    E  D V++  +L     +  + +    FQ + +       +  +  M+ 
Sbjct: 413 LSLFERMKRAGERPDGVTFVGILSACTHMGLVRNGLLHFQSMVDDYSIVPQIEHYGCMVD 472

Query: 242 GYARNGRMLEARRLFDQMPIR-NVVAWNAMIAA---YVQRGQIEEAARLFIEMPERNPVS 297
              R G + +A  +  +MP+  + V W A++ A   Y      E A +  IE+   NP +
Sbjct: 473 LLGRAGLIDKAVDIVRKMPMEPDAVIWAALLGACRMYKNVEMAELALQRLIELEPNNPGN 532

Query: 298 WTTMIDGYVRIAKLDEARRL--------LDQMPYKN-IAAQTAMISGYVQNKRMDEANQI 348
           +  + + Y  + +  +  RL          ++P  + I    +M+  Y  ++R  E + I
Sbjct: 533 FVMVSNIYKDLGRSQDVARLKVAMRDTGFRKVPGCSVIGCNDSMVEFYSLDERHPETDSI 592

Query: 349 F 349
           +
Sbjct: 593 Y 593



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 76/152 (50%), Gaps = 10/152 (6%)

Query: 6   KSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDA 65
           +SIG KG+ +F  N  I    K G +E+A+ +F  +  K+ +T+N++I+  A +G V DA
Sbjct: 354 ESIGYKGN-LFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINGLAMHGHVADA 412

Query: 66  RKLFEQMPQR----NLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMIT 116
             LFE+M +     + V++  +++   H   V+     F  M       P +  +  M+ 
Sbjct: 413 LSLFERMKRAGERPDGVTFVGILSACTHMGLVRNGLLHFQSMVDDYSIVPQIEHYGCMVD 472

Query: 117 CYTRKGELEKARELFDLLPNKEDTACWNAMVA 148
              R G ++KA ++   +P + D   W A++ 
Sbjct: 473 LLGRAGLIDKAVDIVRKMPMEPDAVIWAALLG 504



 Score = 45.1 bits (105), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 43/92 (46%)

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
           QI    +  G   + +V  S IT  A+ G I+ A  +F      +  +WN++  GYA   
Sbjct: 40  QIQAQIVTHGLEGNDYVTPSFITACARLGGIRRARRVFDKTAQPNGATWNAMFRGYAQAN 99

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
              + + LF  M   G +P+  TF  V+ +C+
Sbjct: 100 CHLDVVVLFARMHRAGASPNCFTFPMVVKSCA 131


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 213/654 (32%), Positives = 343/654 (52%), Gaps = 44/654 (6%)

Query: 114 MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS--KNI 171
           +I  YT   +L     LF   P+    A   ++VA +A  G   +A    DA+P   ++ 
Sbjct: 69  LIHLYTLSPDLATPAALFRSDPDPGPVAA-TSLVAAHAAAGRLRDAAAFFDAVPPARRDT 127

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI--P 229
           V  N+M+S + +      A   F A+    + S +L  D Y     L SA      +  P
Sbjct: 128 VLHNAMMSAFARASLAAPAVSVFHAL----LGSGSLRPDDY-SFTALISAVGQMHNLAAP 182

Query: 230 EQNVVSWVTMLSGYA-----RNGRML------------EARRLFDQMPIRNVVAWNAMIA 272
               +    + SG A      N  +             +AR++ D+MP ++ + W  M+ 
Sbjct: 183 HCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVV 242

Query: 273 AYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA----RRL------LDQMP 322
            YV+RG +  A  +F E+  +  V W  MI GYV+     +A    RR+      LD+  
Sbjct: 243 GYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFT 302

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIF----DKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
           + ++ +  A    +V  K +    QI     + +    +   N ++  Y++ G++  A  
Sbjct: 303 FTSVLSACANAGFFVHGKSVH--GQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKR 360

Query: 379 LFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
           +F  M  KD+V+WNT+++GY     +D AV++F+ M   +N +SW  ++SG++      D
Sbjct: 361 IFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVM-PYKNDLSWMVMVSGYVHGGLSED 419

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
           ALK+F  M  E  K    T A A++AC  L AL+ GRQ+H   ++ G+      GN+L+T
Sbjct: 420 ALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLT 479

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           MYAKCG + +A L+F     +D +SWN++I+    +G+  EA++LF++MV EG+ PD ++
Sbjct: 480 MYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRIS 539

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
           F+ +L+AC+H GLVD G   FE M   + I P  +HYA +IDLL R+GR+ EA +++K M
Sbjct: 540 FLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTM 599

Query: 619 KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVE 678
             +P   IW  +L  CR + +++ G  A ++L  + PQ    Y LLSN ++ AGRW +  
Sbjct: 600 PFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAA 659

Query: 679 KVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +VR  M   G +K+PGCSWIEV ++IH FL GD K     E+   L+ + A++R
Sbjct: 660 RVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMR 713



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 118/453 (26%), Positives = 205/453 (45%), Gaps = 100/453 (22%)

Query: 33  EAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDK 92
           +A K+  +M  K+ +T+ +M+  Y + G VN AR +FE++  +  V WN+MI+GY+ +  
Sbjct: 221 DARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGM 280

Query: 93  VKEARELFDKMFRP----DLFSWALMITCYTRKGELEKAR----ELFDLLPNKEDTACW- 143
             +A ELF +M       D F++  +++     G     +    ++  L PN    A   
Sbjct: 281 CADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALP 340

Query: 144 --NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
             NA+V  Y+K G    AK++ D M  K++VSWN++LSGY  +G +  A + F+ M  ++
Sbjct: 341 VNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKN 400

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV---------------------------- 233
            +SW +M+ GYV     + A K F ++  ++V                            
Sbjct: 401 DLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHA 460

Query: 234 -----------VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEE 282
                       +   +L+ YA+ G + +AR +F  MP  + V+WNAMI+A  Q G   E
Sbjct: 461 HLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGRE 520

Query: 283 AARLFIEM------PERNPVSWTTMI-----------------------------DGYVR 307
           A  LF +M      P+R  +S+ T++                             D Y R
Sbjct: 521 ALELFDQMVAEGIDPDR--ISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYAR 578

Query: 308 I-------AKLDEARRLLDQMPYKNIAAQ-TAMISGYVQNKRMD----EANQIFDKIGTH 355
           +        ++ EAR L+  MP++   +   A++SG   N  M+     A+Q+F  I  H
Sbjct: 579 LIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQH 638

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
           D   + ++   Y+  GR  +A  + + M ++ +
Sbjct: 639 DGT-YILLSNTYSAAGRWVDAARVRKLMRDRGV 670



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/415 (24%), Positives = 199/415 (47%), Gaps = 31/415 (7%)

Query: 50  NSMISAYAKNGRVN---DARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP 106
           N++I+ Y K        DARK+ ++MP ++ ++W +M+ GY+    V  AR +F+++   
Sbjct: 204 NALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGK 263

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKL- 162
               W  MI+ Y + G    A ELF  + +++   D   + ++++  A  G +   K + 
Sbjct: 264 FDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVH 323

Query: 163 -------LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
                   + +P   +   N++++ Y+K G++ +A + F+ M  +DVVSWN +L GY++ 
Sbjct: 324 GQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDS 383

Query: 216 DDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMI 271
             LD A + F+ +P +N +SW+ M+SGY   G   +A +LF+QM   +V      +   I
Sbjct: 384 GCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAI 443

Query: 272 AAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
           AA  + G ++   +L   +     E +  +   ++  Y +   +++AR +   MP  +  
Sbjct: 444 AACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSV 503

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQM 383
           +  AMIS   Q+    EA ++FD++       D + +  ++      G +DE  + F  M
Sbjct: 504 SWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESM 563

Query: 384 -----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433
                ++     +  +I    +  ++ +A  + + M        W A++SG   N
Sbjct: 564 KRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTN 618



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 152/297 (51%), Gaps = 21/297 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +T   K G++  A +IF  M+ K+ V++N+++S Y  +G ++ A ++F+ MP +N +
Sbjct: 343 NALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDL 402

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLL 134
           SW  M++GY+H    ++A +LF++M     +P  +++A  I      G L+  R+L   L
Sbjct: 403 SWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHL 462

Query: 135 PN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
                +   +  NA++  YAK G  N+A+ +   MP+ + VSWN+M+S   ++G    A 
Sbjct: 463 VQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREAL 522

Query: 192 KFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSG 242
           + F+ M     + D +S+  +L        +D  + +F+ +     +S     +  ++  
Sbjct: 523 ELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDL 582

Query: 243 YARNGRMLEARRLFDQMPIRNVVA-WNAMIAAYVQRGQIEEAA----RLFIEMPERN 294
             R+GR+ EAR L   MP     + W A+++     G +E  A    +LF  +P+ +
Sbjct: 583 LGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHD 639


>gi|302769356|ref|XP_002968097.1| hypothetical protein SELMODRAFT_89588 [Selaginella moellendorffii]
 gi|300163741|gb|EFJ30351.1| hypothetical protein SELMODRAFT_89588 [Selaginella moellendorffii]
          Length = 586

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 185/572 (32%), Positives = 318/572 (55%), Gaps = 26/572 (4%)

Query: 92  KVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYA 151
            V++AR+LFD++  PD   W +++T Y + G  + A+ +FD  P + D   WN M   ++
Sbjct: 7   SVEDARKLFDQIDNPDTVQWNIIVTAYAQNGHFQNAKSMFDSSPQR-DMVSWNTMCQSFS 65

Query: 152 KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
                +E  + L  MP  N+VSWNS+L  + +NG    A   F AM E+DV+SWN+++  
Sbjct: 66  WSHKVDEVSQCLQKMPQHNVVSWNSLLCTFAQNGHYPKAQALFVAMPEKDVISWNIVISQ 125

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
           Y E+D LD A   F + P+ +VV+W  +++ +       E++R+FD MP R++V+WN+++
Sbjct: 126 YAEID-LDRAKLLFDRAPQHSVVTWNVLIAHHCE-----ESKRVFDAMPCRDIVSWNSLL 179

Query: 272 AAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
                   +++   +F +MP  + +SW T+I    R   LD A  L D+ P +++A    
Sbjct: 180 -------DVDQDQEIFSKMPSHDAISWITVIAANAREGHLDCAMDLFDRSPSRSLALWNV 232

Query: 332 MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTW 391
           ++SG+  +  ++ A  I   +   DV+ WN ++ G  +   + +A  LF  M ++++ +W
Sbjct: 233 ILSGFASSGDVNRARSILSSMPRTDVISWNSLLAGLLEFSSLRDAGELFAAMPHRNLSSW 292

Query: 392 NTMIAGYAQ----IRQMDDAVKIFEEMGK--RRNTVSWNALISGFLQNEFHLDALKIFVL 445
             ++ GYAQ     RQ   A  + E M +  R + V+WNA+I+GF ++   ++AL+++  
Sbjct: 293 TLLVGGYAQHCETPRQA--AAILLESMPQDERVDLVTWNAMIAGFARSGHSIEALELYRE 350

Query: 446 MTQEGK--KADHSTLACALSACAHLA--ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYA 501
           + +  +  + D ST A  + ACA     A+  GR IH  AI  G  +D  VG+SL+ MY 
Sbjct: 351 LEKLDRELQPDASTFAAVIDACASAVPPAVSEGRAIHRQAIARGMDDDPVVGSSLVAMYT 410

Query: 502 KCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIG 561
           + G +  A+  F      + ++WNS++ G+A +G+AT  I+ F  M ++G   D VTF+ 
Sbjct: 411 RIGGLDAAQRCFDRITARNTVAWNSMLVGFANHGSATGVIQSFHAMQLDGAIADAVTFVA 470

Query: 562 VLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIK 621
           VLS+CSH G +    + F+ M   + I    EHY+ + DLL+R G++ EA  +++    +
Sbjct: 471 VLSSCSHAGWIVEAGQCFQSMAADFFIAATPEHYSAIGDLLARLGQIGEARSLIRAKPYE 530

Query: 622 PNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653
            +A  W +LL ACR+H N++ G  A  +  E 
Sbjct: 531 SSAADWMSLLSACRIHCNVEHGASAAAQAFEF 562



 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 163/606 (26%), Positives = 296/606 (48%), Gaps = 87/606 (14%)

Query: 25  LGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMI 84
            GK G VE+A K+F Q+   +TV +N +++AYA+NG   +A+ +F+  PQR++VSWN+M 
Sbjct: 2   FGKCGSVEDARKLFDQIDNPDTVQWNIIVTAYAQNGHFQNAKSMFDSSPQRDMVSWNTMC 61

Query: 85  AGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWN 144
             +  + KV E  +   KM + ++ SW  ++  + + G   KA+ LF  +P K D   WN
Sbjct: 62  QSFSWSHKVDEVSQCLQKMPQHNVVSWNSLLCTFAQNGHYPKAQALFVAMPEK-DVISWN 120

Query: 145 AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS 204
            +++ YA+I + + AK L D  P  ++V+WN +++ + +  +     + F+AM  RD+VS
Sbjct: 121 IVISQYAEI-DLDRAKLLFDRAPQHSVVTWNVLIAHHCEESK-----RVFDAMPCRDIVS 174

Query: 205 WNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV 264
           WN +L       D+D   + F K+P  + +SW+T+++  AR G +  A  LFD+ P R++
Sbjct: 175 WNSLL-------DVDQDQEIFSKMPSHDAISWITVIAANAREGHLDCAMDLFDRSPSRSL 227

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
             WN +++ +   G +  A  +   MP  + +SW +++ G +  + L +A  L   MP++
Sbjct: 228 ALWNVILSGFASSGDVNRARSILSSMPRTDVISWNSLLAGLLEFSSLRDAGELFAAMPHR 287

Query: 325 NIAAQTAMISGYVQNKRMDE--ANQIFDKIGTH---DVVCWNVMIKGYAQCGRMDEAINL 379
           N+++ T ++ GY Q+       A  + + +      D+V WN MI G+A+ G   EA+ L
Sbjct: 288 NLSSWTLLVGGYAQHCETPRQAAAILLESMPQDERVDLVTWNAMIAGFARSGHSIEALEL 347

Query: 380 FRQM-------------------------------------------VNKDIVTWNTMIA 396
           +R++                                           ++ D V  ++++A
Sbjct: 348 YRELEKLDRELQPDASTFAAVIDACASAVPPAVSEGRAIHRQAIARGMDDDPVVGSSLVA 407

Query: 397 GYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHS 456
            Y +I  +D A + F+ +   RNTV+WN+++ GF  +      ++ F  M  +G  AD  
Sbjct: 408 MYTRIGGLDAAQRCFDRI-TARNTVAWNSMLVGFANHGSATGVIQSFHAMQLDGAIADAV 466

Query: 457 TLACALSACAHLA-ALQLGRQIHHLAIKSGYVNDLFVG------NSLITMYAKCGRIQNA 509
           T    LS+C+H    ++ G+    +A       D F+       +++  + A+ G+I  A
Sbjct: 467 TFVAVLSSCSHAGWIVEAGQCFQSMAA------DFFIAATPEHYSAIGDLLARLGQIGEA 520

Query: 510 ELLFKDADPVD--VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT--------F 559
             L + A P +     W SL++   I+ N         +    G   DP+          
Sbjct: 521 RSLIR-AKPYESSAADWMSLLSACRIHCNVEHGASAAAQAFEFGELDDPIAAASGTCKLL 579

Query: 560 IGVLSA 565
           +G+ SA
Sbjct: 580 LGIFSA 585



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 146/357 (40%), Gaps = 100/357 (28%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  ++    SG V  A  I S M + + +++NS+++   +   + DA +LF  MP RNL 
Sbjct: 231 NVILSGFASSGDVNRARSILSSMPRTDVISWNSLLAGLLEFSSLRDAGELFAAMPHRNLS 290

Query: 79  SWNSMIAGYL-HNDKVKEARE-LFDKMF---RPDLFSWALMITCYTRKGELEKARELF-- 131
           SW  ++ GY  H +  ++A   L + M    R DL +W  MI  + R G   +A EL+  
Sbjct: 291 SWTLLVGGYAQHCETPRQAAAILLESMPQDERVDLVTWNAMIAGFARSGHSIEALELYRE 350

Query: 132 ------DLLPN----------------------------------KEDTACWNAMVAGYA 151
                 +L P+                                   +D    +++VA Y 
Sbjct: 351 LEKLDRELQPDASTFAAVIDACASAVPPAVSEGRAIHRQAIARGMDDDPVVGSSLVAMYT 410

Query: 152 KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
           +IG  + A++  D + ++N V+WNSML G+  +G      + F AM+          LDG
Sbjct: 411 RIGGLDAAQRCFDRITARNTVAWNSMLVGFANHGSATGVIQSFHAMQ----------LDG 460

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
            +                  + V++V +LS  +  G ++EA + F  M            
Sbjct: 461 AIA-----------------DAVTFVAVLSSCSHAGWIVEAGQCFQSM------------ 491

Query: 272 AAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA 328
                      AA  FI      P  ++ + D   R+ ++ EAR L+   PY++ AA
Sbjct: 492 -----------AADFFIAA---TPEHYSAIGDLLARLGQIGEARSLIRAKPYESSAA 534



 Score = 43.9 bits (102), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 27/47 (57%)

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
           M+ KCG +++A  LF   D  D + WN ++  YA NG+   A  +F+
Sbjct: 1   MFGKCGSVEDARKLFDQIDNPDTVQWNIIVTAYAQNGHFQNAKSMFD 47


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 182/437 (41%), Positives = 270/437 (61%), Gaps = 16/437 (3%)

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV 358
           +++I  Y     L  A++L +    +++ +  AMI GYV++  M  A  +FD++   DV+
Sbjct: 234 SSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVI 293

Query: 359 CWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRR 418
            WN MI GYA  G++DEA  LF +M  +++V+WN+M+AG+ +   ++DA  +F EM   R
Sbjct: 294 SWNTMINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEM-PCR 352

Query: 419 NTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIH 478
           + VSWN++++ + Q     +AL +F  M   G K   +T+   LSACAHL AL  G  +H
Sbjct: 353 DVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLH 412

Query: 479 HLAIKSGYVND------LFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYA 532
                  Y+ND        VG +L+ MYAKCG+I  A  +F   +  DV++WN++IAG A
Sbjct: 413 ------TYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMA 466

Query: 533 INGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLV 592
           I+GN  EA +LF+EM   GV P+ +TF+ +LSACSH G+VD G KL +CM+  Y IEP V
Sbjct: 467 IHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKV 526

Query: 593 EHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSE 652
           EHY C+IDLL+RAG L+EA E++  M ++PN    G LLG CR+H N +LG +  ++L  
Sbjct: 527 EHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLIN 586

Query: 653 LEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD- 711
           L+P  +  Y LLSN++A A +WD+  KVR  M+ +G  K PG S IE+K  +H F++GD 
Sbjct: 587 LQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDW 646

Query: 712 --PKQCRTAEICNTLKT 726
             P+  +  E  N + T
Sbjct: 647 SHPESNKIYEKLNEIHT 663



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 119/441 (26%), Positives = 213/441 (48%), Gaps = 36/441 (8%)

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTR 120
           A+ +F  +       +NS+I     +    EA  L+  M     +PD  ++  +I     
Sbjct: 148 AKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVI----- 202

Query: 121 KGELEKARELFDLLPNKE--------DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV 172
           K   E +   F LL +          D+   ++++  YA   +   AK+L +   ++++V
Sbjct: 203 KACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVV 262

Query: 173 SWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQN 232
           SWN+M+ GY K+ EM  A   F+ M  RDV+SWN M++GY  +  +D A + F ++PE+N
Sbjct: 263 SWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERN 322

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP- 291
           +VSW +ML+G+ + G + +A  LF +MP R+VV+WN+M+A Y Q G+  EA  LF +M  
Sbjct: 323 LVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRA 382

Query: 292 ---ERNPVSWTTMIDGYVRIAKLDEARRLL----DQMPYKNIAAQTAMISGYVQNKRMDE 344
              +    +  +++     +  LD+   L     D     N    TA++  Y +  ++  
Sbjct: 383 VGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISL 442

Query: 345 ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQ 400
           A Q+F+ + + DV+ WN +I G A  G + EA  LF++M    V  + +T+  +++  + 
Sbjct: 443 ATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSH 502

Query: 401 IRQMDDAVKIFEEM----GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHS 456
              +D+  K+ + M    G       +  +I    +  F  +A+++   M  E    + S
Sbjct: 503 AGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPME---PNPS 559

Query: 457 TLACALSACAHLAALQLGRQI 477
            L   L  C      +LG  +
Sbjct: 560 ALGALLGGCRIHGNFELGEMV 580



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 157/292 (53%), Gaps = 19/292 (6%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           ++   +S+I  YA    +  A++LF     R++VSWN+MI GY+ + ++  AR +FD+M 
Sbjct: 229 DSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMV 288

Query: 105 RPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLD 164
             D+ SW  MI  Y   G++++A+ LFD +P + +   WN+M+AG+ K GN  +A  L  
Sbjct: 289 CRDVISWNTMINGYAIVGKIDEAKRLFDEMPER-NLVSWNSMLAGFVKCGNVEDAFGLFS 347

Query: 165 AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME-------ERDVVSWNLMLDGYVELDD 217
            MP +++VSWNSML+ Y + G+ + A   F+ M        E  VVS   +L     L  
Sbjct: 348 EMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVS---LLSACAHLGA 404

Query: 218 LDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
           LD        I     E N +    ++  YA+ G++  A ++F+ M  ++V+AWN +IA 
Sbjct: 405 LDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAG 464

Query: 274 YVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
               G ++EA +LF EM     E N +++  ++        +DE ++LLD M
Sbjct: 465 MAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCM 516



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 188/357 (52%), Gaps = 26/357 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  I    K   +  A  +F +M  ++ +++N+MI+ YA  G++++A++LF++MP+
Sbjct: 261 VVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPE 320

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RNLVSWNSM+AG++    V++A  LF +M   D+ SW  M+ CY + G+  +A  LFD +
Sbjct: 321 RNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQM 380

Query: 135 PN---KEDTACWNAMVAGYAKIGNYNEAKKLL----DAMPSKNIVSWNSMLSGYTKNGEM 187
                K   A   ++++  A +G  ++   L     D     N +   +++  Y K G++
Sbjct: 381 RAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKI 440

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGY 243
            LA++ F AME +DV++WN ++ G     ++  A + F+++ E  V    +++V +LS  
Sbjct: 441 SLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSAC 500

Query: 244 ARNGRMLEARRLFDQMPIR-----NVVAWNAMIAAYVQRGQIEEAARLFIEMP-ERNPVS 297
           +  G + E ++L D M         V  +  +I    + G +EEA  L   MP E NP +
Sbjct: 501 SHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSA 560

Query: 298 WTTMIDGYVRIA---KLDE--ARRLLDQMPYKNIAAQTAMISG-YVQNKRMDEANQI 348
              ++ G  RI    +L E   +RL++  P    + +  ++S  Y   K+ D+A ++
Sbjct: 561 LGALLGG-CRIHGNFELGEMVGKRLINLQPCH--SGRYILLSNIYAAAKKWDDARKV 614



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 131/302 (43%), Gaps = 52/302 (17%)

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482
           +N+LI     ++  L+AL ++  M Q G K DH T    + AC   +    G  +H   +
Sbjct: 163 YNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNESSVTWFGLLVHTHVV 222

Query: 483 KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIK 542
           KSG+  D ++ +SLI +YA    +  A+ LF      DV+SWN++I GY  +     A  
Sbjct: 223 KSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARM 282

Query: 543 LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE------------------ 584
           +F+ MV      D +++  +++  + VG +D   +LF+ M E                  
Sbjct: 283 VFDRMVCR----DVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGN 338

Query: 585 ------VYAIEPL--VEHYACMIDLLSRAGRLDEA---FEMVKGMKIKPNAGIWGTLLGA 633
                 +++  P   V  +  M+   ++ G+ +EA   F+ ++ + +KP      +LL A
Sbjct: 339 VEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSA 398

Query: 634 C----------RMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVS 683
           C           +H  I   RI V  +             L +M+A+ G+     +V  +
Sbjct: 399 CAHLGALDKGLHLHTYINDNRIEVNSIVG---------TALVDMYAKCGKISLATQVFNA 449

Query: 684 ME 685
           ME
Sbjct: 450 ME 451


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  355 bits (911), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 209/625 (33%), Positives = 336/625 (53%), Gaps = 18/625 (2%)

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK 183
           + ++ ++F  + N     C N M+ GY +  +  +A  +   M   N+ + N       +
Sbjct: 76  INQSYQIFSHIENPNGFIC-NTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQ 134

Query: 184 NGEMHLASKFFEAMEER--------DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
           +  + LA    + +++         DV   N +++ Y    +L  A K F      ++VS
Sbjct: 135 SCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVS 194

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
           W +ML+GY   G + EA+ ++D+MP RNV+A N+MI  + ++G +EEA +LF EM +++ 
Sbjct: 195 WNSMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDL 254

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA-QTAMISGYVQNKRM------DEANQI 348
           VSW+ +I  Y +    +EA  L  +M    I   +  ++S      R+         + +
Sbjct: 255 VSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGL 314

Query: 349 FDKIGTHDVV-CWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDA 407
             K+G    V   N +I  Y+ C  +  A  LF +    D ++WN+MI+GY +  +++ A
Sbjct: 315 VVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKA 374

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
             +F+ M  + N VSW+A+ISG+ Q +   + L +F  M  EG K D + L   +SAC H
Sbjct: 375 RALFDSMPDKDN-VSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTH 433

Query: 468 LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSL 527
           LAAL  G+ IH    K+G   ++ +G +LI MY K G +++A  +FK  +   V +WN+L
Sbjct: 434 LAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNAL 493

Query: 528 IAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYA 587
           I G A+NG   +++K F EM   GV P+ +TF+ VL AC H+GLVD G + F  M + + 
Sbjct: 494 ILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHK 553

Query: 588 IEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAV 647
           I P ++HY CM+DLL RAG L EA E+++ M + P+   WG LLGAC+ + + + G    
Sbjct: 554 IGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIG 613

Query: 648 EKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTF 707
            KL EL P       LLSN++A  G W +V +VR  M   G  K PGCS IE   ++H F
Sbjct: 614 RKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEF 673

Query: 708 LSGDPKQCRTAEICNTLKTLAAQIR 732
           L+GD    +   I + L  +A +++
Sbjct: 674 LAGDKTHPQNEHIEHMLDEMAKKLK 698



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 143/561 (25%), Positives = 267/561 (47%), Gaps = 32/561 (5%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHN 90
           + ++ +IFS +   N    N+M+  Y +      A  +++ M + N+ + N        +
Sbjct: 76  INQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQS 135

Query: 91  DKVKEAR--------ELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTAC 142
             ++ A          +    F  D++    +I  Y   G L  AR++FD   +  D   
Sbjct: 136 CSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFD-GSSVLDMVS 194

Query: 143 WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV 202
           WN+M+AGY  +GN  EAK + D MP +N+++ NSM+  + K G +  A K F  M+++D+
Sbjct: 195 WNSMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDL 254

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQNV-VSWVTMLSGYARNGRMLE------ARRL 255
           VSW+ ++  Y + +  + A   F+++    + V  V +LS  +   R+L          L
Sbjct: 255 VSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGL 314

Query: 256 FDQMPIRNVVAW-NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
             ++ I   V   NA+I  Y    ++  A +LF E    + +SW +MI GYV+  ++++A
Sbjct: 315 VVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKA 374

Query: 315 RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI---GTH-DVVCWNVMIKGYAQC 370
           R L D MP K+  + +AMISGY Q  R  E   +F ++   GT  D      +I      
Sbjct: 375 RALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHL 434

Query: 371 GRMDEA--INLF--RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNAL 426
             +D+   I+ +  +  +  +I+   T+I  Y ++  ++DA+++F+ + + +   +WNAL
Sbjct: 435 AALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGL-EEKGVSTWNAL 493

Query: 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
           I G   N     +LK F  M + G   +  T    L AC H+  +  G +  +  I+   
Sbjct: 494 ILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHK 553

Query: 487 VN-DLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGNATEAIKL 543
           +  ++     ++ +  + G ++ AE L  ++ P+  DV +W +L+      G+     ++
Sbjct: 554 IGPNIKHYGCMVDLLGRAGMLKEAEELI-ESMPMAPDVSTWGALLGACKKYGDNETGERI 612

Query: 544 FEEMVMEGVAPDPVTFIGVLS 564
             ++V   + PD   F  +LS
Sbjct: 613 GRKLV--ELHPDHDGFNVLLS 631



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 121/499 (24%), Positives = 232/499 (46%), Gaps = 64/499 (12%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V+ QN  I      G + +A K+F   S  + V++NSM++ Y   G V +A+ ++++M
Sbjct: 159 SDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRM 218

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF- 131
           P+RN+++ NSMI  +     V+EA +LF++M + DL SW+ +I+CY +    E+A  LF 
Sbjct: 219 PERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFK 278

Query: 132 ----------DLLPNKEDTAC---------------------------WNAMVAGYAKIG 154
                     +++     +AC                            NA++  Y+   
Sbjct: 279 EMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCE 338

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE 214
               A+KL       + +SWNSM+SGY K GE+  A   F++M ++D VSW+ M+ GY +
Sbjct: 339 EVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQ 398

Query: 215 LDDLDSAWKFFQKI------PEQ----NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV 264
            D        FQ++      P++    +V+S  T L+   + G+ + A    + + I N+
Sbjct: 399 QDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQ-GKWIHAYIRKNGLKI-NI 456

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
           +    +I  Y++ G +E+A  +F  + E+   +W  +I G      +D++ +   +M   
Sbjct: 457 ILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEH 516

Query: 325 NIAAQ----TAMISGYVQNKRMDEANQIFD------KIGTHDVVCWNVMIKGYAQCGRMD 374
            +        A++        +DE ++ F+      KIG  ++  +  M+    + G + 
Sbjct: 517 GVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGP-NIKHYGCMVDLLGRAGMLK 575

Query: 375 EAINLFRQM-VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK-RRNTVSWNALISGFLQ 432
           EA  L   M +  D+ TW  ++    +    +   +I  ++ +   +   +N L+S    
Sbjct: 576 EAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYA 635

Query: 433 NEFH-LDALKIFVLMTQEG 450
           ++ + +D L++  +M Q G
Sbjct: 636 SKGNWVDVLEVRGMMRQHG 654


>gi|356509350|ref|XP_003523413.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial-like [Glycine max]
          Length = 678

 Score =  355 bits (911), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 214/664 (32%), Positives = 330/664 (49%), Gaps = 71/664 (10%)

Query: 81  NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
           N ++  Y     +++A  LFD+M + + FSW  ++  +   G    A  LF+ +P+K   
Sbjct: 40  NRLLQLYSRCRNLQDASHLFDEMPQTNSFSWNTLVQAHLNSGHTHSALHLFNAMPHKTHF 99

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME-- 198
           + WN +V+ +AK G+   A  L +AMPSKN + WNS++  Y+++G    A   F++M   
Sbjct: 100 S-WNMVVSAFAKSGHLQLAHSLFNAMPSKNHLVWNSIIHSYSRHGHPGKALFLFKSMNLD 158

Query: 199 ------------------------------------------ERDVVSWNLMLDGYVELD 216
                                                     E D V  + +++ Y +  
Sbjct: 159 PSQIVYRDAFVLATALGACADSLALNCGKQVHARVFVDGMGLELDRVLCSSLINLYGKCG 218

Query: 217 DLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ 276
           DLDSA +    + + +  S   ++SGYA  GRM EAR +FD       V WN++I+ YV 
Sbjct: 219 DLDSAARIVSFVRDVDEFSLSALISGYANAGRMREARSVFDSKVDPCAVLWNSIISGYVS 278

Query: 277 RGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGY 336
            G+  EA  LF  M  RN V                       Q     +A   +  SG 
Sbjct: 279 NGEEVEAVNLFSAML-RNGV-----------------------QGDASAVANILSAASGL 314

Query: 337 VQNKRMDEANQIFDKIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMI 395
           +  + + + +    K G THD+V  + ++  Y++C    EA  LF ++   D +  NTMI
Sbjct: 315 LVVELVKQMHVYACKAGVTHDIVVASSLLDAYSKCQSPCEACKLFSELKEYDTILLNTMI 374

Query: 396 AGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADH 455
             Y+   +++DA  IF  M   +  +SWN+++ G  QN    +AL IF  M +   K D 
Sbjct: 375 TVYSNCGRIEDAKLIFNTM-PSKTLISWNSILVGLTQNACPSEALNIFSQMNKLDLKMDR 433

Query: 456 STLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD 515
            + A  +SACA  ++L+LG Q+   AI  G  +D  +  SL+  Y KCG ++    +F  
Sbjct: 434 FSFASVISACACRSSLELGEQVFGKAITIGLESDQIISTSLVDFYCKCGFVEIGRKVFDG 493

Query: 516 ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
               D +SWN+++ GYA NG   EA+ LF EM   GV P  +TF GVLSAC H GLV+ G
Sbjct: 494 MVKTDEVSWNTMLMGYATNGYGIEALTLFCEMTYGGVWPSAITFTGVLSACDHSGLVEEG 553

Query: 576 LKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACR 635
             LF  M   Y I P +EH++CM+DL +RAG  +EA ++++ M  + +A +W ++L  C 
Sbjct: 554 RNLFHTMKHSYNINPGIEHFSCMVDLFARAGYFEEAMDLIEEMPFQADANMWLSVLRGCI 613

Query: 636 MHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGC 695
            H N  +G++A E++ +LEP+ T  Y  LSN+ A +G W+    VR  M     QK PGC
Sbjct: 614 AHGNKTIGKMAAEQIIQLEPENTGAYIQLSNILASSGDWEGSALVRELMRDKHFQKIPGC 673

Query: 696 SWIE 699
           SW +
Sbjct: 674 SWAD 677



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 131/612 (21%), Positives = 241/612 (39%), Gaps = 124/612 (20%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N+ +    +   +++A  +F +M Q N+ ++N+++ A+  +G  + A  LF  MP +   
Sbjct: 40  NRLLQLYSRCRNLQDASHLFDEMPQTNSFSWNTLVQAHLNSGHTHSALHLFNAMPHKTHF 99

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF---DLLP 135
           SWN +++ +  +  ++ A  LF+ M   +   W  +I  Y+R G   KA  LF   +L P
Sbjct: 100 SWNMVVSAFAKSGHLQLAHSLFNAMPSKNHLVWNSIIHSYSRHGHPGKALFLFKSMNLDP 159

Query: 136 NK----------------------------------------EDTACWNAMVAGYAKIGN 155
           ++                                         D    ++++  Y K G+
Sbjct: 160 SQIVYRDAFVLATALGACADSLALNCGKQVHARVFVDGMGLELDRVLCSSLINLYGKCGD 219

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
            + A +++  +   +  S ++++SGY   G M  A   F++  +   V WN ++ GYV  
Sbjct: 220 LDSAARIVSFVRDVDEFSLSALISGYANAGRMREARSVFDSKVDPCAVLWNSIISGYVSN 279

Query: 216 DDLDSAWKFFQKI---------------------------------------PEQNVVSW 236
            +   A   F  +                                          ++V  
Sbjct: 280 GEEVEAVNLFSAMLRNGVQGDASAVANILSAASGLLVVELVKQMHVYACKAGVTHDIVVA 339

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
            ++L  Y++     EA +LF ++   + +  N MI  Y   G+IE+A  +F  MP +  +
Sbjct: 340 SSLLDAYSKCQSPCEACKLFSELKEYDTILLNTMITVYSNCGRIEDAKLIFNTMPSKTLI 399

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKI 352
           SW +++ G  + A   EA  +  QM   ++        ++IS       ++   Q+F K 
Sbjct: 400 SWNSILVGLTQNACPSEALNIFSQMNKLDLKMDRFSFASVISACACRSSLELGEQVFGKA 459

Query: 353 GT----HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAV 408
            T     D +    ++  Y +CG ++    +F  MV  D V+WNTM+ GYA         
Sbjct: 460 ITIGLESDQIISTSLVDFYCKCGFVEIGRKVFDGMVKTDEVSWNTMLMGYA--------- 510

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
                                   N + ++AL +F  MT  G      T    LSAC H 
Sbjct: 511 -----------------------TNGYGIEALTLFCEMTYGGVWPSAITFTGVLSACDHS 547

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNS-LITMYAKCGRIQNAELLFKDAD-PVDVISWNS 526
             ++ GR + H    S  +N      S ++ ++A+ G  + A  L ++     D   W S
Sbjct: 548 GLVEEGRNLFHTMKHSYNINPGIEHFSCMVDLFARAGYFEEAMDLIEEMPFQADANMWLS 607

Query: 527 LIAGYAINGNAT 538
           ++ G   +GN T
Sbjct: 608 VLRGCIAHGNKT 619



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 112/503 (22%), Positives = 215/503 (42%), Gaps = 114/503 (22%)

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
           SW T+     R GR L    L   +   +V   N ++  Y +   +++A+ LF EMP+ N
Sbjct: 12  SWSTL-----REGRQLHVAFLKTGILNSSVAVANRLLQLYSRCRNLQDASHLFDEMPQTN 66

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
             SW T++  ++       A  L + MP+K   +   ++S + ++  +  A+ +F+ + +
Sbjct: 67  SFSWNTLVQAHLNSGHTHSALHLFNAMPHKTHFSWNMVVSAFAKSGHLQLAHSLFNAMPS 126

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQM------------------------------- 383
            + + WN +I  Y++ G   +A+ LF+ M                               
Sbjct: 127 KNHLVWNSIIHSYSRHGHPGKALFLFKSMNLDPSQIVYRDAFVLATALGACADSLALNCG 186

Query: 384 -------------VNKDIVTWNTMIAGYAQIRQMDDAVKI------------------FE 412
                        +  D V  +++I  Y +   +D A +I                  + 
Sbjct: 187 KQVHARVFVDGMGLELDRVLCSSLINLYGKCGDLDSAARIVSFVRDVDEFSLSALISGYA 246

Query: 413 EMGKRRN------------TVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
             G+ R              V WN++ISG++ N   ++A+ +F  M + G + D S +A 
Sbjct: 247 NAGRMREARSVFDSKVDPCAVLWNSIISGYVSNGEEVEAVNLFSAMLRNGVQGDASAVAN 306

Query: 461 ALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG--------------------------- 493
            LSA + L  ++L +Q+H  A K+G  +D+ V                            
Sbjct: 307 ILSAASGLLVVELVKQMHVYACKAGVTHDIVVASSLLDAYSKCQSPCEACKLFSELKEYD 366

Query: 494 ----NSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549
               N++IT+Y+ CGRI++A+L+F       +ISWNS++ G   N   +EA+ +F +M  
Sbjct: 367 TILLNTMITVYSNCGRIEDAKLIFNTMPSKTLISWNSILVGLTQNACPSEALNIFSQMNK 426

Query: 550 EGVAPDPVTFIGVLSACSHVGLVDGGLKLF-ECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
             +  D  +F  V+SAC+    ++ G ++F + +T     + ++     ++D   + G +
Sbjct: 427 LDLKMDRFSFASVISACACRSSLELGEQVFGKAITIGLESDQIIS--TSLVDFYCKCGFV 484

Query: 609 DEAFEMVKGMKIKPNAGIWGTLL 631
           +   ++  GM +K +   W T+L
Sbjct: 485 EIGRKVFDGM-VKTDEVSWNTML 506


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  355 bits (911), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 235/761 (30%), Positives = 382/761 (50%), Gaps = 79/761 (10%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           Q + V    +++ Y+      D+  +F    ++NL  WN++++GYL N   ++A  +F +
Sbjct: 126 QNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVE 185

Query: 103 M-----FRPDLFSWALMI-TCY----TRKGELEKARELFDLLPNKEDTACWNAMVAGYAK 152
           M     F PD F+   +I  C      R GE      L   + +  D    NA++A Y K
Sbjct: 186 MISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLS--DVFVGNALIAMYGK 243

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLD-- 210
            G    A K+ D MP +N+VSWNS++    +NG    +   F+ +   D     LM D  
Sbjct: 244 FGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGD---EGLMPDVA 300

Query: 211 ------------GYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
                       G V L  +         +  +  V+  ++L  Y++ G + EAR LFD 
Sbjct: 301 TMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVN-SSLLDMYSKCGYLCEARVLFDT 359

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLF--IEMPERNPVSWTTMIDGY------VRIAK 310
              +NV++WN+MI  Y +      A  L   ++M ++  V+  T+++        ++  K
Sbjct: 360 NE-KNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLK 418

Query: 311 LDEAR--RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
           L E     L       +     A ++GY +   +  A  +F  + +  V  WN +I G+ 
Sbjct: 419 LKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHV 478

Query: 369 QCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIR-----------------QMDDA 407
           Q G   +A++L+  M    +  D+ T  ++++  A+++                 ++D+ 
Sbjct: 479 QNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEF 538

Query: 408 V-----------------KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
           +                 K+F +  + +N V WN +I+GF QNEF  DAL +F  M    
Sbjct: 539 ICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSK 598

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
              D  ++  AL AC+ ++AL+LG+++H  A+KS      FV  SLI MYAKCG ++ ++
Sbjct: 599 IWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQ 658

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
            +F        ++WN LI GY I+G+  +AI+LF+ M   G  PD VTFI +L+AC+H G
Sbjct: 659 NIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAG 718

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
           LV  GL+    M  ++ I+P +EHYAC++D+L RAGRL+EA E+V  +  KP++ IW +L
Sbjct: 719 LVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSL 778

Query: 631 LGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQ 690
           L +CR ++++ +G     KL EL P K   Y L+SN +A  G+WDEV K+R  M+  G Q
Sbjct: 779 LSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQ 838

Query: 691 KQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           K  GCSWIE+  ++  FL GD    ++ +I  T   L  +I
Sbjct: 839 KDAGCSWIEIGGKVSRFLVGDESLLQSMKIQQTWIELEKKI 879



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 137/580 (23%), Positives = 248/580 (42%), Gaps = 91/580 (15%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S VF  N  I   GK G VE A+K+F +M Q+N V++NS++ A  +NG   ++  LF+  
Sbjct: 229 SDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFK-- 286

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD 132
                        G L+           D+   PD+ +   +I    R+GE+        
Sbjct: 287 -------------GLLNG----------DEGLMPDVATMVTVIPLCARQGEVRLGMVFHG 323

Query: 133 L---LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           L   L    +    ++++  Y+K G   EA+ L D    KN++SWNSM+ GY+K+ +   
Sbjct: 324 LALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFDT-NEKNVISWNSMIGGYSKDRDFRG 382

Query: 190 ASKFFEAMEERDVVSWN--LMLD---------GYVELDDLDSAWKFFQKIPEQNVVSWVT 238
           A +    M+  D V  N   +L+          +++L ++   +       + + +    
Sbjct: 383 AFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIH-GYALRHGFIQSDELVANA 441

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERN 294
            ++GYA+ G +  A  +F  M  + V +WNA+I  +VQ G   +A  L++ M     E +
Sbjct: 442 FVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPD 501

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFD 350
             +  +++    R+  L   + +   M             +++S YVQ  ++  A   FD
Sbjct: 502 LFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFD 561

Query: 351 KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI---------------------- 388
            +   ++VCWN MI G++Q     +A+++F QM++  I                      
Sbjct: 562 NMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRL 621

Query: 389 -----------------VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFL 431
                                ++I  YA+   M+ +  IF+ +   +  V+WN LI+G+ 
Sbjct: 622 GKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRV-HLKGEVTWNVLITGYG 680

Query: 432 QNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ-IHHLAIKSGYVNDL 490
            +     A+++F  M   G + D  T    L+AC H   +  G + +  +    G    L
Sbjct: 681 IHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKL 740

Query: 491 FVGNSLITMYAKCGRIQNA-ELLFKDADPVDVISWNSLIA 529
                ++ M  + GR+  A EL+ +  D  D   W+SL++
Sbjct: 741 EHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLS 780



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 136/321 (42%), Gaps = 49/321 (15%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           + G++  A   F  M +KN V +N+MI+ +++N    DA  +F QM    +      I G
Sbjct: 549 QCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIG 608

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
            L       A  L  ++             C+  K  L             E +    ++
Sbjct: 609 ALGACSQVSALRLGKEL------------HCFAVKSHL------------TEHSFVTCSL 644

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDV 202
           +  YAK G   +++ + D +  K  V+WN +++GY  +G    A + F++M+      D 
Sbjct: 645 IDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDS 704

Query: 203 VSW----------NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA 252
           V++           L+ +G   L  + S +    K+     V  V ML    R GR+ EA
Sbjct: 705 VTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACV--VDML---GRAGRLNEA 759

Query: 253 RRLFDQMPIR-NVVAWNAMIAA---YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRI 308
             L +++P + +   W++++++   Y      E+ A   +E+      ++  + + Y R+
Sbjct: 760 LELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFYARL 819

Query: 309 AKLDEARRLLDQMPYKNIAAQ 329
            K DE R++  +M  K I  Q
Sbjct: 820 GKWDEVRKMRQRM--KEIGLQ 838



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 47/226 (20%)

Query: 462 LSACAHLAALQLGRQIHH-LAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVD 520
           L  C     +++GR+IH+ ++    + ND+ +   L+TMY+ C    ++ L+F  +   +
Sbjct: 100 LQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRKN 159

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMV-MEGVAPDPVTFIGVLSACSHV---------- 569
           +  WN+L++GY  N    +A+ +F EM+ +    PD  T   V+ AC  V          
Sbjct: 160 LFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVH 219

Query: 570 -------------------------GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSR 604
                                    G V+  +K+F+ M +   +      YAC+      
Sbjct: 220 GFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACL-----E 274

Query: 605 AGRLDEAFEMVKGM-----KIKPNAGIWGTLLGACRMHQNIKLGRI 645
            G  +E++ + KG+      + P+     T++  C     ++LG +
Sbjct: 275 NGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMV 320



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 19/164 (11%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL---- 77
           I    K G +E++  IF ++  K  VT+N +I+ Y  +G    A +LF+ M         
Sbjct: 645 IDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDS 704

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFD 132
           V++ +++    H   V E  E   +M      +P L  +A ++    R G L +A EL +
Sbjct: 705 VTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVN 764

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNE-------AKKLLDAMPSK 169
            LP+K D+  W++++   +   NY +       A KLL+  P K
Sbjct: 765 ELPDKPDSRIWSSLL---SSCRNYRDLDIGEKVANKLLELGPDK 805


>gi|326522488|dbj|BAK07706.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 799

 Score =  355 bits (910), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 214/641 (33%), Positives = 348/641 (54%), Gaps = 30/641 (4%)

Query: 109 FSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS 168
           F++  M+  + + G++  AR LFD +P +     +  MV    K G   EA +L +  PS
Sbjct: 153 FTYDFMVHEHVKAGDIASARGLFDGMPER-SVVSYTTMVDALMKRGRVAEAVELYEQCPS 211

Query: 169 KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYV-------ELDD 217
            ++  + + +SG+ +N   H A   F  M    V    +++  M+   V        +  
Sbjct: 212 GSVAFFTATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSI 271

Query: 218 LDSAWK--FFQK-IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
           + SA K  FF+  I  QN     ++++ Y R G    AR++FD+M +++VV+W A++  Y
Sbjct: 272 VGSAIKSNFFESSIEVQN-----SLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVY 326

Query: 275 VQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM----PYKNIAAQT 330
            + G ++ A R+   MPERN VSW T+I  + +     EA +L  QM       NI+  +
Sbjct: 327 SESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFS 386

Query: 331 AMISGYVQNKRMDEANQIFD---KIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
           +++S     + +    +I     K+G+  +V   + +I  Y +C +  +A  +F  +  K
Sbjct: 387 SVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEK 446

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446
           +IV WN++ +GY+   +M +A+ +F++M   RN  SWN +ISG+ QN   +DAL+ F  M
Sbjct: 447 NIVCWNSLASGYSYNGKMVEAMYLFKKM-PARNLASWNTIISGYAQNRQFVDALRSFNAM 505

Query: 447 TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI 506
              G+     T +  L ACA+L +L  G+  H   IK G    +F+G +L  MYAK G +
Sbjct: 506 LASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDL 565

Query: 507 QNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
           Q+++ +F      + ++W ++I G A NG A E+I LFE+M+  G+ P+  TF+ +L AC
Sbjct: 566 QSSKRMFYQMPERNDVTWTAMIQGLAENGLAEESILLFEDMMATGMTPNEHTFLALLFAC 625

Query: 567 SHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGI 626
           SH GLV+  +  FE M + + I P  +HY CM+D+L+RAGRL EA  ++     K  A  
Sbjct: 626 SHGGLVEQAIHYFEKM-QAWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANS 684

Query: 627 WGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEG 686
           W  LL AC  ++N ++G  A ++L EL    T+ Y LLSNM+A  GRW +  ++RV M+G
Sbjct: 685 WAALLSACNTYKNEEIGERAAKRLHELGKDNTAGYVLLSNMYASCGRWKDAARIRVLMKG 744

Query: 687 SGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
           +  +K  GCSW++V+ Q H F S + K   + EI   L  L
Sbjct: 745 TTLKKDGGCSWVQVRGQYHAFFSWEAKHPLSMEINEILDLL 785



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 146/594 (24%), Positives = 267/594 (44%), Gaps = 111/594 (18%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F  +  + +  K+G +  A  +F  M +++ V+Y +M+ A  K GRV +A +L+EQ P  
Sbjct: 153 FTYDFMVHEHVKAGDIASARGLFDGMPERSVVSYTTMVDALMKRGRVAEAVELYEQCPSG 212

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALM----------------- 114
           ++  + + I+G++ N+    A  +F KM     RP+  ++  M                 
Sbjct: 213 SVAFFTATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIV 272

Query: 115 -------------------ITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGN 155
                              IT Y R G+   AR++FD +  K D   W A++  Y++ G+
Sbjct: 273 GSAIKSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVK-DVVSWTALLDVYSESGD 331

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDG 211
            + A+++LDAMP +N VSW ++++ + + G    A K +  M       ++  ++ +L  
Sbjct: 332 LDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSA 391

Query: 212 YVELDDLDSAWKFFQKI----PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
              L+DL    +   +        NV    +++  Y +  +  +A+ +FD +P +N+V W
Sbjct: 392 CATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCW 451

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLD------QM 321
           N++ + Y   G++ EA  LF +MP RN  SW T+I GY +  +  +A R  +      Q+
Sbjct: 452 NSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQV 511

Query: 322 P----YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG-YAQCGRMDEA 376
           P    + ++    A +   V  K M  A  I  K+G  + +     +   YA+ G +  +
Sbjct: 512 PGEITFSSVLLACANLCSLVTGK-MAHAKTI--KLGMEESIFIGTALSDMYAKSGDLQSS 568

Query: 377 INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALI-----S 428
             +F QM  ++ VTW  MI G A+    ++++ +FE+M   G   N  ++ AL+      
Sbjct: 569 KRMFYQMPERNDVTWTAMIQGLAENGLAEESILLFEDMMATGMTPNEHTFLALLFACSHG 628

Query: 429 GFLQNEFH--------------------LDAL-------KIFVLMTQEGKKADHSTLACA 461
           G ++   H                    +D L       +   L+ +   K++ ++ A  
Sbjct: 629 GLVEQAIHYFEKMQAWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAAL 688

Query: 462 LSACAHLAALQLG----RQIHHLAI--KSGYVNDLFVGNSLITMYAKCGRIQNA 509
           LSAC      ++G    +++H L     +GYV        L  MYA CGR ++A
Sbjct: 689 LSACNTYKNEEIGERAAKRLHELGKDNTAGYV-------LLSNMYASCGRWKDA 735



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 122/467 (26%), Positives = 220/467 (47%), Gaps = 34/467 (7%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           QN  IT   + G    A K+F +M  K+ V++ +++  Y+++G ++ AR++ + MP+RN 
Sbjct: 288 QNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNE 347

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMIT-CYT----RKGELEKAR 128
           VSW ++IA +       EA +L+ +M     RP++  ++ +++ C T    R G    AR
Sbjct: 348 VSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLEDLRGGARIHAR 407

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
            L   + +  +    ++++  Y K     +A+ + D +P KNIV WNS+ SGY+ NG+M 
Sbjct: 408 SL--KMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYSYNGKMV 465

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ------KIPEQNVVSWVTMLSG 242
            A   F+ M  R++ SWN ++ GY +      A + F       ++P +   S V +   
Sbjct: 466 EAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSSVLLACA 525

Query: 243 ---YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWT 299
                  G+M  A+ +   M   ++    A+   Y + G ++ + R+F +MPERN V+WT
Sbjct: 526 NLCSLVTGKMAHAKTIKLGME-ESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWT 584

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFDKIGTH 355
            MI G       +E+  L + M    +        A++        +++A   F+K+   
Sbjct: 585 AMIQGLAENGLAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFEKMQAW 644

Query: 356 DVVC----WNVMIKGYAQCGRMDEAINLFRQMVNK-DIVTWNTMIAG---YAQIRQMDDA 407
            +      +  M+   A+ GR+ EA  L  +  +K +  +W  +++    Y      + A
Sbjct: 645 GISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYKNEEIGERA 704

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
            K   E+GK  NT  +  L + +       DA +I VLM     K D
Sbjct: 705 AKRLHELGK-DNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKD 750



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 151/324 (46%), Gaps = 23/324 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  +  I    K  +  +A  IF  + +KN V +NS+ S Y+ NG++ +A  LF++MP 
Sbjct: 417 VFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYSYNGKMVEAMYLFKKMPA 476

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPD------LFSWALMIT---CYTRKGELE 125
           RNL SWN++I+GY  N +  +A   F+ M           FS  L+     C    G++ 
Sbjct: 477 RNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSSVLLACANLCSLVTGKMA 536

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
            A+ +   L  +E      A+   YAK G+   +K++   MP +N V+W +M+ G  +NG
Sbjct: 537 HAKTI--KLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQGLAENG 594

Query: 186 EMHLASKFFEAMEERDVV----SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS----WV 237
               +   FE M    +     ++  +L        ++ A  +F+K+    +      + 
Sbjct: 595 LAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFEKMQAWGISPKEKHYT 654

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVV-AWNAMIAA---YVQRGQIEEAARLFIEMPER 293
            M+   AR GR++EA  L  + P ++   +W A+++A   Y      E AA+   E+ + 
Sbjct: 655 CMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYKNEEIGERAAKRLHELGKD 714

Query: 294 NPVSWTTMIDGYVRIAKLDEARRL 317
           N   +  + + Y    +  +A R+
Sbjct: 715 NTAGYVLLSNMYASCGRWKDAARI 738


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  355 bits (910), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 214/679 (31%), Positives = 359/679 (52%), Gaps = 66/679 (9%)

Query: 118 YTRKGELEKARELF-DLLPNKEDTACW---NAMVAGYAKIGNYNEAKKLLDAMPSKNIVS 173
           +T +  L+K R L   ++     ++C    N+++  YAK  +  +AK + D + +K+++S
Sbjct: 17  FTHQKSLQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKAKLVFDRIHNKDVIS 76

Query: 174 WNSMLSGYTKNGEM--HLASKFFEAMEERDVVSWNLMLDG-YVELDDLDSAWKFFQKIPE 230
           WN +++GY++ G        + F+ M   +++       G +    +L S + F Q+   
Sbjct: 77  WNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIF-FGQQAHA 135

Query: 231 --------QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEE 282
                    +V    ++L+ Y + G + EAR +FD+MP RN V W  MI+ Y  +    E
Sbjct: 136 VAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGE 195

Query: 283 AARLF----IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN-----IAAQTAMI 333
           A  +F     E  + N  ++T+++   + + +  ++ + +  +  K      ++   A++
Sbjct: 196 AFEVFELMRREEEDVNEFAFTSVLSA-LAVPEFVDSGKQIHCLAVKTGLLVFLSILNALV 254

Query: 334 SGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM---------- 383
           + Y +   +D++ Q+F+     + + W+ MI GYAQ G   +A+ LF +M          
Sbjct: 255 TMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEF 314

Query: 384 -----------------------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
                                            +     ++  YA+    +DA K F  +
Sbjct: 315 TLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYL 374

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
            ++ + V W ++I+G++QN  + DAL ++  M  EG   +  T+A  L AC++LAA   G
Sbjct: 375 -QQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQG 433

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
           RQIH   IK G   ++ +G++L TMYAKCG ++   ++F+     D+ISWN++I+G + N
Sbjct: 434 RQIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQN 493

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEH 594
           G   EA++LFEEM  +   PD VTF+ VLSACSH+GLVD G   F  M + + + P VEH
Sbjct: 494 GYGKEALELFEEMRQQDTKPDDVTFVNVLSACSHMGLVDSGWLYFRMMFDEFGLLPKVEH 553

Query: 595 YACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE 654
           YACM+D+LSRAG+L EA E ++   I     +W  LLGACR ++N +LG  A EKL EL 
Sbjct: 554 YACMVDVLSRAGKLYEAKEFIESTTIDHGLCLWRILLGACRNYRNYELGAYAGEKLMELG 613

Query: 655 PQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQ 714
            Q++S Y LLS ++   GR ++VE+VR  M+  G  K+PGCSWIE+K+ +H F+ GD   
Sbjct: 614 SQESSAYVLLSGIYTALGRPEDVERVRSMMKVRGVSKEPGCSWIELKSNVHVFVVGDQMH 673

Query: 715 CRTAEICNTLKTLAAQIRN 733
               EI   +  L+ Q+++
Sbjct: 674 PCIGEIRTEILRLSKQMKD 692



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 196/392 (50%), Gaps = 27/392 (6%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPD-- 107
           +S+++ Y K G + +AR++F++MP+RN V+W +MI+GY       EA E+F+ M R +  
Sbjct: 150 SSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRREEED 209

Query: 108 --LFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKL 162
              F++  +++       ++  +++  L          +  NA+V  YAK G+ +++ ++
Sbjct: 210 VNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQV 269

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE-------L 215
            +    KN ++W++M++GY ++G+ H A K F  M    +      L G +        +
Sbjct: 270 FEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAV 329

Query: 216 DDLDSAWKFFQKIP-EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
           ++      +  K+  E  +     ++  YA++G   +AR+ F+ +   ++V W +MIA Y
Sbjct: 330 EEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGY 389

Query: 275 VQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ- 329
           VQ G+ E+A  L+  M       N ++  +++     +A  D+ R++  +     +  + 
Sbjct: 390 VQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEV 449

Query: 330 ---TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
              +A+ + Y +   ++E N +F ++   D++ WN MI G +Q G   EA+ LF +M  +
Sbjct: 450 TIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQNGYGKEALELFEEMRQQ 509

Query: 387 DI----VTWNTMIAGYAQIRQMDDAVKIFEEM 414
           D     VT+  +++  + +  +D     F  M
Sbjct: 510 DTKPDDVTFVNVLSACSHMGLVDSGWLYFRMM 541



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 119/525 (22%), Positives = 212/525 (40%), Gaps = 137/525 (26%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA--RELFDKMFRPD 107
           NS+I+ YAK   +  A+ +F+++  ++++SWN +I GY        +   ELF +M R D
Sbjct: 47  NSLINFYAKCCHLPKAKLVFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELFQRM-RAD 105

Query: 108 LFSWALMITCYTRKGELEKARELFDLLPNKE------DTACWNAMVAG------YAKIGN 155
                ++   +T  G    A  L  +   ++        AC+  +  G      Y K G 
Sbjct: 106 ----NILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGL 161

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM--EERDVVSW-------- 205
             EA+++ D MP +N V+W +M+SGY        A + FE M  EE DV  +        
Sbjct: 162 LFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSA 221

Query: 206 -----------------------------NLMLDGYVELDDLDSAWKFFQKIPEQNVVSW 236
                                        N ++  Y +   LD + + F+   ++N ++W
Sbjct: 222 LAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITW 281

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNV-------------------------------- 264
             M++GYA++G   +A +LF +M    +                                
Sbjct: 282 SAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYLLK 341

Query: 265 -------VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL 317
                      A++  Y + G  E+A + F  + + + V WT+MI GYV+  + ++A  L
Sbjct: 342 LGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSL 401

Query: 318 LDQMPYKNIAAQTAMISGYVQN----KRMDEANQIFDKIGTH----DVVCWNVMIKGYAQ 369
             +M  + I      ++  ++        D+  QI  +   +    +V   + +   YA+
Sbjct: 402 YCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAK 461

Query: 370 CGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
           CG ++E   +FR+M  +DI++WN MI+G +Q     +A+++FEE                
Sbjct: 462 CGNLEEGNIVFRRMPERDIISWNAMISGLSQNGYGKEALELFEE---------------- 505

Query: 430 FLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
                           M Q+  K D  T    LSAC+H+  +  G
Sbjct: 506 ----------------MRQQDTKPDDVTFVNVLSACSHMGLVDSG 534



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/401 (21%), Positives = 166/401 (41%), Gaps = 90/401 (22%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP----- 73
           N  +T   K G +++++++F   + KN++T+++MI+ YA++G  + A KLF +M      
Sbjct: 251 NALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGIN 310

Query: 74  ----------------------------------QRNLVSWNSMIAGYLHNDKVKEAREL 99
                                             +  L    +++  Y  +   ++AR+ 
Sbjct: 311 PSEFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKG 370

Query: 100 FDKMFRPDLFSWALMITCYTRKGELEKARELF------DLLPNKED-----TACWN---- 144
           F+ + +PDL  W  MI  Y + GE E A  L+       +LPN+        AC N    
Sbjct: 371 FNYLQQPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAF 430

Query: 145 -----------------------AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
                                  A+   YAK GN  E   +   MP ++I+SWN+M+SG 
Sbjct: 431 DQGRQIHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMISGL 490

Query: 182 TKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQ-----N 232
           ++NG    A + FE M ++D     V++  +L     +  +DS W +F+ + ++      
Sbjct: 491 SQNGYGKEALELFEEMRQQDTKPDDVTFVNVLSACSHMGLVDSGWLYFRMMFDEFGLLPK 550

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQIE---EAARLFI 288
           V  +  M+   +R G++ EA+   +   I   +  W  ++ A       E    A    +
Sbjct: 551 VEHYACMVDVLSRAGKLYEAKEFIESTTIDHGLCLWRILLGACRNYRNYELGAYAGEKLM 610

Query: 289 EMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
           E+  +   ++  +   Y  + + ++  R+   M  + ++ +
Sbjct: 611 ELGSQESSAYVLLSGIYTALGRPEDVERVRSMMKVRGVSKE 651


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  355 bits (910), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 238/781 (30%), Positives = 377/781 (48%), Gaps = 132/781 (16%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNL---VSWNSMIAGYLHNDKVKEARELFDKMF---- 104
           ++  Y    R  DA  +F  +P+      + WN +I G+      + A   + KM+    
Sbjct: 82  LVGMYVLARRFRDAVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPS 141

Query: 105 --RPDLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNEA 159
             RPD  +   ++      G L   R +      L    D    +A++  YA  G     
Sbjct: 142 SPRPDGHTLPYVVKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAG----- 196

Query: 160 KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLD 219
             LLD                         A + F+ M+ERD V WN+M+DGYV+  D+ 
Sbjct: 197 --LLDG------------------------AREVFDGMDERDCVLWNVMMDGYVKAGDVA 230

Query: 220 SAWKFFQKI--------------------PEQNVVSWV-------------------TML 240
           SA   F+ +                     E +++S V                   T++
Sbjct: 231 SAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLV 290

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPV 296
           S YA+   + EA RLF  MP  ++V WN MI+  VQ G +++A RLF +M     + + V
Sbjct: 291 SMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSV 350

Query: 297 SWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
           +  +++     +    + + +    +    + ++   +A++  Y + + +  A  +FD  
Sbjct: 351 TLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDAT 410

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEA-INLFRQMVNKDIVTWNTMIAG-------------- 397
            + DVV  + MI GY    RM EA + +FR ++   I     M+A               
Sbjct: 411 KSIDVVIGSTMISGYVL-NRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIG 469

Query: 398 -------------------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
                                    Y++  ++D +  +F +M  + + V+WN++IS F Q
Sbjct: 470 QELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAK-DEVTWNSMISSFAQ 528

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
           N    +AL +F  M  EG K ++ T++  LSACA L A+  G++IH + IK     DLF 
Sbjct: 529 NGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIRADLFA 588

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
            ++LI MY KCG ++ A  +F+     + +SWNS+I+ Y  +G   E++ L   M  EG 
Sbjct: 589 ESALIDMYGKCGNLELALRVFEHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGF 648

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
             D VTF+ ++SAC+H G V  GL+LF CMTE Y IEP VEH +CM+DL SRAG+LD+A 
Sbjct: 649 KADHVTFLALISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKAM 708

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672
           + +  M  KP+AGIWG LL ACR+H+N++L  IA ++L +L+P     Y L+SN++A AG
Sbjct: 709 QFIADMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNCGYYVLMSNINAVAG 768

Query: 673 RWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           RWD V K+R  M+    QK PG SW++V N  H F++ D     + EI  +LK+L  +++
Sbjct: 769 RWDGVSKMRRLMKDKKVQKIPGYSWVDVNNTSHLFVAADKNHPDSEEIYMSLKSLIIELK 828

Query: 733 N 733
            
Sbjct: 829 Q 829



 Score =  156 bits (395), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 135/553 (24%), Positives = 241/553 (43%), Gaps = 69/553 (12%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           +++I  YA  G ++ AR++F+ M +R+ V WN M+ GY+    V  A  LF  M      
Sbjct: 186 SALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCD 245

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL 162
           P+  + A  ++    + +L    +L  L      + + A  N +V+ YAK     EA +L
Sbjct: 246 PNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRL 305

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDL 218
              MP  ++V+WN M+SG  +NG +  A + F  M+    + D V+   +L    EL+  
Sbjct: 306 FGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGF 365

Query: 219 DSAWKFFQKIPEQNVVSWVTMLSGY------ARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
               +    I        V ++S         R+ RM  A+ +FD     +VV  + MI+
Sbjct: 366 KQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRM--AQNVFDATKSIDVVIGSTMIS 423

Query: 273 AYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARRL----LDQMPYK 324
            YV     E A ++F  +     + N V   + +     +A +   + L    L      
Sbjct: 424 GYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEG 483

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM- 383
               ++A++  Y +  R+D ++ +F K+   D V WN MI  +AQ G  +EA++LFRQM 
Sbjct: 484 RCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMI 543

Query: 384 --------------------------------------VNKDIVTWNTMIAGYAQIRQMD 405
                                                 +  D+   + +I  Y +   ++
Sbjct: 544 MEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLE 603

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
            A+++FE M   +N VSWN++IS +  +    +++ +   M +EG KADH T    +SAC
Sbjct: 604 LALRVFEHM-PEKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALISAC 662

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNS-LITMYAKCGRIQNAELLFKDAD-PVDVIS 523
           AH   +Q G ++     +  ++       S ++ +Y++ G++  A     D     D   
Sbjct: 663 AHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKPDAGI 722

Query: 524 WNSLIAGYAINGN 536
           W +L+    ++ N
Sbjct: 723 WGALLHACRVHRN 735



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 111/444 (25%), Positives = 203/444 (45%), Gaps = 38/444 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  ++   K   +EEA ++F  M + + VT+N MIS   +NG V+DA +LF  M +  L 
Sbjct: 287 NTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQ 346

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAREL 130
              V+  S++      +  K+ +E+   + R     D+F  + ++  Y +  ++  A+ +
Sbjct: 347 PDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNV 406

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEA-----KKLLDAMPSKNIVSWNSMLSGYTKNG 185
           FD      D    + M++GY  +   +EA     + LL      N V   S L       
Sbjct: 407 FD-ATKSIDVVIGSTMISGYV-LNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMA 464

Query: 186 EMHLASKFF-----EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
            M +  +        A E R  V   LM D Y +   LD +   F K+  ++ V+W +M+
Sbjct: 465 AMRIGQELHGYVLKNAYEGRCYVESALM-DMYSKCGRLDLSHYMFSKMSAKDEVTWNSMI 523

Query: 241 SGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQI---EEAARLFIEMPER 293
           S +A+NG   EA  LF QM +  V    V  +++++A      I   +E   + I+ P R
Sbjct: 524 SSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIR 583

Query: 294 -NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF--- 349
            +  + + +ID Y +   L+ A R+ + MP KN  +  ++IS Y  +  + E+  +    
Sbjct: 584 ADLFAESALIDMYGKCGNLELALRVFEHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCM 643

Query: 350 -DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-----VNKDIVTWNTMIAGYAQIRQ 403
            ++    D V +  +I   A  G++ E + LFR M     +   +   + M+  Y++  +
Sbjct: 644 QEEGFKADHVTFLALISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGK 703

Query: 404 MDDAVKIFEEMGKRRNTVSWNALI 427
           +D A++   +M  + +   W AL+
Sbjct: 704 LDKAMQFIADMPFKPDAGIWGALL 727



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 9/142 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F ++  I   GK G +E A+++F  M +KN V++NS+ISAY  +G V ++  L   M +
Sbjct: 586 LFAESALIDMYGKCGNLELALRVFEHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCMQE 645

Query: 75  RNL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELE 125
                  V++ ++I+   H  +V+E   LF  M       P +   + M+  Y+R G+L+
Sbjct: 646 EGFKADHVTFLALISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKLD 705

Query: 126 KARELFDLLPNKEDTACWNAMV 147
           KA +    +P K D   W A++
Sbjct: 706 KAMQFIADMPFKPDAGIWGALL 727


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  355 bits (910), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 194/612 (31%), Positives = 334/612 (54%), Gaps = 23/612 (3%)

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW 205
           ++A Y+    +N+A  +L ++P   + S++S++   TK      +   F  M    ++  
Sbjct: 56  LIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLFSQSIGVFSRMFSHGLIPD 115

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTM--------LSGYARNGRMLEARRLFD 257
             +L    ++    SA+K  ++I     VS + M           Y R GRM +AR++FD
Sbjct: 116 THVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFD 175

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDE 313
           +M  ++VV  +A++  Y ++G +EE  R+  EM     E N VSW  ++ G+ R     E
Sbjct: 176 RMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKE 235

Query: 314 ARRLLDQMPYKNIAAQTAMISGYV----QNKRMDEANQIFDKIGTH----DVVCWNVMIK 365
           A  +  +M +         +S  +     ++ ++   QI   +       D    + M+ 
Sbjct: 236 AVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLD 295

Query: 366 GYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVK---IFEEMGKRRNTVS 422
            Y + G +   I LF +    +    N  I G ++   +D A++   +F+E     N VS
Sbjct: 296 MYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVS 355

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482
           W ++I+G  QN   ++AL++F  M   G K +  T+   L AC ++AAL  GR  H  A+
Sbjct: 356 WTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAV 415

Query: 483 KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIK 542
           +   ++D+ VG++LI MYAKCGRI+ ++++F      +++ WNSL+ GY+++G A E + 
Sbjct: 416 RVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMS 475

Query: 543 LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLL 602
           +FE ++   + PD ++F  +LSAC  VGL D G K F  M+E Y I+P +EHY+CM++LL
Sbjct: 476 IFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLL 535

Query: 603 SRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYA 662
            RAG+L EA++++K +  +P++ +WG LL +CR+  N+ L  IA +KL  LEP+    Y 
Sbjct: 536 GRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEPENPGTYV 595

Query: 663 LLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICN 722
           L+SN++A  G W EV+ +R  ME  G +K PGCSWI+VKN+++T L+ D    +  +I  
Sbjct: 596 LMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNKVYTLLACDKSHPQIDQITE 655

Query: 723 TLKTLAAQIRNT 734
            +  ++ ++R +
Sbjct: 656 KMDEISEEMRKS 667



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 117/505 (23%), Positives = 213/505 (42%), Gaps = 70/505 (13%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKE 95
           +I    +Q +      +I++Y+     NDA  + + +P   + S++S+I          +
Sbjct: 40  RILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLFSQ 99

Query: 96  ARELFDKMFR----------PDLFSWAL---------MITC------------------- 117
           +  +F +MF           P+LF              I C                   
Sbjct: 100 SIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFH 159

Query: 118 -YTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIV 172
            Y R G +  AR++FD +  K+   C +A++ GYA+ G   E  ++L  M       NIV
Sbjct: 160 MYMRCGRMGDARKVFDRMSEKDVVTC-SALLCGYARKGCLEEVVRILSEMEKSGIEPNIV 218

Query: 173 SWNSMLSGYTKNGEMHLASKFFEAMEE----RDVVSWNLMLDGYVELDDLDSAWKFFQKI 228
           SWN +LSG+ ++G    A   F+ M       D V+ + +L    + ++L+   +    +
Sbjct: 219 SWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYV 278

Query: 229 PEQNVVS----WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA 284
            +Q ++        ML  Y ++G +    +LFD+  +      NA I    + G +++A 
Sbjct: 279 IKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKAL 338

Query: 285 RLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMIS------ 334
            +F    E+    N VSWT++I G  +  K  EA  L  +M    +      I       
Sbjct: 339 EMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPAC 398

Query: 335 GYVQNKRMDEANQIFDKIGTH---DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTW 391
           G +       +   F  +  H   DV   + +I  YA+CGR+  +  +F  M  K++V W
Sbjct: 399 GNIAALGHGRSTHGF-AVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCW 457

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRR---NTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
           N+++ GY+   +  + + IFE + + R   + +S+ +L+S   Q     +  K F +M++
Sbjct: 458 NSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSE 517

Query: 449 E-GKKADHSTLACALSACAHLAALQ 472
           E G K      +C ++       LQ
Sbjct: 518 EYGIKPRLEHYSCMVNLLGRAGKLQ 542



 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 103/455 (22%), Positives = 199/455 (43%), Gaps = 92/455 (20%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F Q        + GR+ +A K+F +MS+K+ VT ++++  YA+ G + +  ++  +M + 
Sbjct: 152 FVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKS 211

Query: 76  ----NLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKA 127
               N+VSWN +++G+  +   KEA  +F KM    F PD  + + ++        L   
Sbjct: 212 GIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMG 271

Query: 128 RELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
           R++   +  +   +D    +AM+  Y K G+     KL D          N+ ++G ++N
Sbjct: 272 RQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRN 331

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYA 244
           G +  A + F   +E+ +                           E NVVSW ++++G A
Sbjct: 332 GLVDKALEMFGLFKEQKM---------------------------ELNVVSWTSIIAGCA 364

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDG 304
           +NG+ +EA  LF +M +  V                           + N V+  +M+  
Sbjct: 365 QNGKDIEALELFREMQVAGV---------------------------KPNRVTIPSMLPA 397

Query: 305 YVRIAKLDEAR---------RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
              IA L   R          LLD     ++   +A+I  Y +  R+  +  +F+ + T 
Sbjct: 398 CGNIAALGHGRSTHGFAVRVHLLD-----DVHVGSALIDMYAKCGRIKMSQIVFNMMPTK 452

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLF----RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIF 411
           ++VCWN ++ GY+  G+  E +++F    R  +  D +++ ++++   Q+   D+  K F
Sbjct: 453 NLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYF 512

Query: 412 ----EEMGKRRNTVSWNALI-----SGFLQNEFHL 437
               EE G +     ++ ++     +G LQ  + L
Sbjct: 513 NMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDL 547



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 150/320 (46%), Gaps = 24/320 (7%)

Query: 26  GKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLF----EQMPQRNLVSWN 81
           GKSG V   IK+F +     T   N+ I+  ++NG V+ A ++F    EQ  + N+VSW 
Sbjct: 298 GKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWT 357

Query: 82  SMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDL---L 134
           S+IAG   N K  EA ELF +M     +P+  +   M+        L   R        +
Sbjct: 358 SIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRV 417

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
              +D    +A++  YAK G    ++ + + MP+KN+V WNS+++GY+ +G+       F
Sbjct: 418 HLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIF 477

Query: 195 EA-MEER---DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYAR 245
           E+ M  R   D +S+  +L    ++   D  WK+F  + E+  +      +  M++   R
Sbjct: 478 ESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGR 537

Query: 246 NGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTTM 301
            G++ EA  L  ++P   +   W A++ +   +  +   E AA+    +   NP ++  M
Sbjct: 538 AGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEPENPGTYVLM 597

Query: 302 IDGYVRIAKLDEARRLLDQM 321
            + Y       E   + ++M
Sbjct: 598 SNIYAAKGMWTEVDSIRNKM 617



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 69/135 (51%), Gaps = 9/135 (6%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL---- 77
           I    K GR++ +  +F+ M  KN V +NS+++ Y+ +G+  +   +FE + +  L    
Sbjct: 430 IDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDF 489

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFD 132
           +S+ S+++         E  + F+ M      +P L  ++ M+    R G+L++A +L  
Sbjct: 490 ISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIK 549

Query: 133 LLPNKEDTACWNAMV 147
            +P + D+  W A++
Sbjct: 550 EIPFEPDSCVWGALL 564



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 81/202 (40%), Gaps = 7/202 (3%)

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
           Q H   +KSG  ND ++   LI  Y+      +A+L+ +      V S++SLI       
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAK 95

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHY 595
             +++I +F  M   G+ PD      +   C+ +     G K   C+  V  ++      
Sbjct: 96  LFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAG-KQIHCVACVSGLDMDAFVQ 154

Query: 596 ACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVE-KLSELE 654
             +  +  R GR+ +A ++   M  K        L G  R     ++ RI  E + S +E
Sbjct: 155 GSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIE 214

Query: 655 PQKTSCYALLSNM-----HAEA 671
           P   S   +LS       H EA
Sbjct: 215 PNIVSWNGILSGFNRSGYHKEA 236


>gi|413933352|gb|AFW67903.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 788

 Score =  355 bits (910), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 205/641 (31%), Positives = 348/641 (54%), Gaps = 22/641 (3%)

Query: 109 FSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS 168
           F++  M++ + + G++  AR LF  +P K     +  MV    K G+  +A +L +  P 
Sbjct: 150 FTYDFMVSEHVKAGDIASARRLFYGMPEKS-VVSYTTMVDALMKRGSVRDAVELYERCPL 208

Query: 169 KNIVSWNSMLSGYTKNGEMH-----LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWK 223
            ++  + +M+SG+ +N E+H     +  K        +VV+   ++   V   + D A  
Sbjct: 209 HSVAFFTAMISGFVRN-ELHKDAFTVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMG 267

Query: 224 FFQ-----KIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
                    + E+++    ++++ Y R G    ARR+FD M +R+VV+W A++  Y   G
Sbjct: 268 VVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVYADLG 327

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM----PYKNIAAQTAMIS 334
            ++ A R+   MP RN VSW T+I  + +     EA +L  QM       NI+  ++++S
Sbjct: 328 DLDGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLS 387

Query: 335 GYVQNKRMDEANQIFD---KIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
                + +    +I     K+G+  ++   + +I  Y +C +   A  +F  +  K+ V 
Sbjct: 388 ACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVC 447

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
           WN++I+GY+   +M +A  +F +M   RN+VSWN +ISG+ +N    DAL  F  M   G
Sbjct: 448 WNSLISGYSWNGKMVEAEGLFNKM-PARNSVSWNTMISGYAENRRFGDALNYFYAMLASG 506

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
                 TL+  L ACA+L +L++GR +H   +K G  +++F+G +L  MYAK G + ++ 
Sbjct: 507 HIPGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALCDMYAKSGDLDSSR 566

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
            +F      + I+W +++ G A NG A E+I LFE+M+  G+AP+  TF+ +L ACSH G
Sbjct: 567 RVFYQMPEKNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCG 626

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
           LV+  +  FE M + + I P  +HY CM+D+L+RAG L EA E++  +  + +   W +L
Sbjct: 627 LVEQAIHYFETM-QAHGIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSSELDTSSWSSL 685

Query: 631 LGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQ 690
           L AC  ++N ++G  A +KL ELE   T+ Y LLSNM+A  G+W +  + R+ M+G+  +
Sbjct: 686 LSACSTYRNKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGASLK 745

Query: 691 KQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           K  GCSW++++ Q H F S   K   + EI   L  L  ++
Sbjct: 746 KDAGCSWLQLRGQYHAFFSWKEKHPLSLEIYEILDLLMLEL 786



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 141/577 (24%), Positives = 263/577 (45%), Gaps = 75/577 (12%)

Query: 25  LGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMI 84
             ++G  ++A +        ++ TY+ M+S + K G +  AR+LF  MP++++VS+ +M+
Sbjct: 128 FARAGDRDQAFRDCVAADAASSFTYDFMVSEHVKAGDIASARRLFYGMPEKSVVSYTTMV 187

Query: 85  AGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF------DLLPNKE 138
              +    V++A EL+++     +  +  MI+ + R    + A  +F       + PN  
Sbjct: 188 DALMKRGSVRDAVELYERCPLHSVAFFTAMISGFVRNELHKDAFTVFRKMLTCSVRPNVV 247

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDA-----MPSKNIVSWNSMLSGYTKNGEMHLASKF 193
              C   ++      G ++ A  ++       +  K+I   NS+++ Y + G+   A + 
Sbjct: 248 TLIC---VIKACVGAGEFDLAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAARRV 304

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEAR 253
           F+ ME RDVVSW  +LD Y +L DLD A +    +P +N VSW T+++ + + G   EA 
Sbjct: 305 FDDMEVRDVVSWTALLDVYADLGDLDGARRVLDAMPARNEVSWGTLIARHEQKGDTAEAL 364

Query: 254 RLFDQMPI----RNVVAWNAMIAAYVQ----RGQIEEAARLFIEMPERNPVSWTTMIDGY 305
           +L+ QM       N+  ++++++A       RG     A         N    +++ID Y
Sbjct: 365 KLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMY 424

Query: 306 VRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIK 365
            +  +   A+R+ + +P KN     ++ISGY  N +M EA  +F+K+   + V WN MI 
Sbjct: 425 CKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMIS 484

Query: 366 GYAQCGRMDEAINLFRQM---------------------------------------VNK 386
           GYA+  R  +A+N F  M                                       +  
Sbjct: 485 GYAENRRFGDALNYFYAMLASGHIPGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIED 544

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446
           +I     +   YA+   +D + ++F +M   +N ++W A++ G  +N F  +++ +F  M
Sbjct: 545 NIFMGTALCDMYAKSGDLDSSRRVFYQM-PEKNNITWTAMVQGLAENGFAEESISLFEDM 603

Query: 447 TQEGKKADHSTLACALSACAHLAALQLG------RQIHHLAIKSGYVNDLFVGNSLITMY 500
            + G   +  T    L AC+H   ++         Q H +  KS +         ++ + 
Sbjct: 604 IENGIAPNEHTFLAILFACSHCGLVEQAIHYFETMQAHGIPPKSKHY------TCMVDVL 657

Query: 501 AKCGRIQNA-ELLFKDADPVDVISWNSLIAGYAINGN 536
           A+ G +  A ELL K +  +D  SW+SL++  +   N
Sbjct: 658 ARAGCLPEAEELLMKVSSELDTSSWSSLLSACSTYRN 694



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 140/594 (23%), Positives = 273/594 (45%), Gaps = 111/594 (18%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F  +  +++  K+G +  A ++F  M +K+ V+Y +M+ A  K G V DA +L+E+ P  
Sbjct: 150 FTYDFMVSEHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLH 209

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDL---------------FSWAL--- 113
           ++  + +MI+G++ N+  K+A  +F KM     RP++               F  A+   
Sbjct: 210 SVAFFTAMISGFVRNELHKDAFTVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVV 269

Query: 114 ------------------MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGN 155
                             +IT Y R G+   AR +FD +  + D   W A++  YA +G+
Sbjct: 270 GLAVKCNLFEKSIEVHNSLITLYLRMGDAAAARRVFDDMEVR-DVVSWTALLDVYADLGD 328

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM------------------ 197
            + A+++LDAMP++N VSW ++++ + + G+   A K +  M                  
Sbjct: 329 LDGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSA 388

Query: 198 ---------------------EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSW 236
                                   ++   + ++D Y +      A + F  +PE+N V W
Sbjct: 389 CATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCW 448

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER--- 293
            +++SGY+ NG+M+EA  LF++MP RN V+WN MI+ Y +  +  +A   F  M      
Sbjct: 449 NSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHI 508

Query: 294 -NPVSWTTMIDGYVRIAKLDEARRLLDQMPY----KNIAAQTAMISGYVQNKRMDEANQI 348
              ++ ++++     +  L+  R +  ++       NI   TA+   Y ++  +D + ++
Sbjct: 509 PGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALCDMYAKSGDLDSSRRV 568

Query: 349 FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIV----TWNTMIAGYAQIRQM 404
           F ++   + + W  M++G A+ G  +E+I+LF  M+   I     T+  ++   +    +
Sbjct: 569 FYQMPEKNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLV 628

Query: 405 DDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
           + A+  FE M   G    +  +  ++    +     +A ++ + ++ E    D S+ +  
Sbjct: 629 EQAIHYFETMQAHGIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSSE---LDTSSWSSL 685

Query: 462 LSACAHLAALQLG----RQIHHLAI--KSGYVNDLFVGNSLITMYAKCGRIQNA 509
           LSAC+     ++G    +++H L     +GYV        L  MYA CG+ ++A
Sbjct: 686 LSACSTYRNKEIGERAAKKLHELEKDNTAGYV-------LLSNMYASCGKWKDA 732



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 118/485 (24%), Positives = 217/485 (44%), Gaps = 73/485 (15%)

Query: 179 SGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
           + + + G+   A +   A +     +++ M+  +V+  D+ SA + F  +PE++VVS+ T
Sbjct: 126 AAFARAGDRDQAFRDCVAADAASSFTYDFMVSEHVKAGDIASARRLFYGMPEKSVVSYTT 185

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----PERN 294
           M+    + G + +A  L+++ P+ +V  + AMI+ +V+    ++A  +F +M       N
Sbjct: 186 MVDALMKRGSVRDAVELYERCPLHSVAFFTAMISGFVRNELHKDAFTVFRKMLTCSVRPN 245

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLD-----QMPYKNIAAQTAMISGYVQNKRMDEANQIF 349
            V+   +I   V   + D A  ++       +  K+I    ++I+ Y++      A ++F
Sbjct: 246 VVTLICVIKACVGAGEFDLAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAARRVF 305

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVK 409
           D +   DVV W  ++  YA  G +D A  +   M  ++ V+W T+IA + Q     +A+K
Sbjct: 306 DDMEVRDVVSWTALLDVYADLGDLDGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALK 365

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           ++ +                                M  +G + + S  +  LSACA L 
Sbjct: 366 LYSQ--------------------------------MLADGCRPNISCFSSVLSACATLQ 393

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC-------------------------- 503
            L+ G +IH  A+K G   +LFV +SLI MY KC                          
Sbjct: 394 DLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLIS 453

Query: 504 -----GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
                G++  AE LF      + +SWN++I+GYA N    +A+  F  M+  G  P  +T
Sbjct: 454 GYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEIT 513

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
              VL AC+++  ++ G ++         IE  +     + D+ +++G LD +  +   M
Sbjct: 514 LSSVLLACANLCSLEMG-RMVHAEIVKLGIEDNIFMGTALCDMYAKSGDLDSSRRVFYQM 572

Query: 619 KIKPN 623
             K N
Sbjct: 573 PEKNN 577



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 149/319 (46%), Gaps = 19/319 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F  +  I    K  +   A ++F+ + +KNTV +NS+IS Y+ NG++ +A  LF +MP 
Sbjct: 414 LFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPA 473

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAREL 130
           RN VSWN+MI+GY  N +  +A   F  M      P   + + ++        LE  R +
Sbjct: 474 RNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITLSSVLLACANLCSLEMGRMV 533

Query: 131 FD---LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
                 L  +++     A+   YAK G+ + ++++   MP KN ++W +M+ G  +NG  
Sbjct: 534 HAEIVKLGIEDNIFMGTALCDMYAKSGDLDSSRRVFYQMPEKNNITWTAMVQGLAENGFA 593

Query: 188 HLASKFFEAMEERDVV----SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS----WVTM 239
             +   FE M E  +     ++  +L        ++ A  +F+ +    +      +  M
Sbjct: 594 EESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHYFETMQAHGIPPKSKHYTCM 653

Query: 240 LSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAA---YVQRGQIEEAARLFIEMPERNP 295
           +   AR G + EA  L  ++    +  +W+++++A   Y  +   E AA+   E+ + N 
Sbjct: 654 VDVLARAGCLPEAEELLMKVSSELDTSSWSSLLSACSTYRNKEIGERAAKKLHELEKDNT 713

Query: 296 VSWTTMIDGYVRIAKLDEA 314
             +  + + Y    K  +A
Sbjct: 714 AGYVLLSNMYASCGKWKDA 732



 Score = 43.9 bits (102), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 21/173 (12%)

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD---ADPVDVISWNSL 527
           L L   +H  A++SG   D  V ++L+T YA   R  + +  F+D   AD     +++ +
Sbjct: 96  LPLVLSLHAHALRSGLATDRSVASNLLTAYAAFARAGDRDQAFRDCVAADAASSFTYDFM 155

Query: 528 IAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE-CMTEVY 586
           ++ +   G+   A +LF  M  + V    V++  ++ A    G V   ++L+E C     
Sbjct: 156 VSEHVKAGDIASARRLFYGMPEKSV----VSYTTMVDALMKRGSVRDAVELYERC----- 206

Query: 587 AIEPL--VEHYACMIDLLSRAGRLDEAFEMVKGM---KIKPNAGIWGTLLGAC 634
              PL  V  +  MI    R     +AF + + M    ++PN      ++ AC
Sbjct: 207 ---PLHSVAFFTAMISGFVRNELHKDAFTVFRKMLTCSVRPNVVTLICVIKAC 256


>gi|224080081|ref|XP_002306009.1| predicted protein [Populus trichocarpa]
 gi|222848973|gb|EEE86520.1| predicted protein [Populus trichocarpa]
          Length = 870

 Score =  354 bits (909), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 224/714 (31%), Positives = 370/714 (51%), Gaps = 49/714 (6%)

Query: 45  NTVTYNSMISAYAKNGRV-NDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
           +T+  N+++S YAK G V  DA   F+ + ++++VSWN++I+G+  N+ +++A  LF  M
Sbjct: 164 HTLAGNALVSMYAKCGLVCQDAYAAFDSIDEKDVVSWNAIISGFAENNLMEDAFRLFSSM 223

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACW-NAMVAGYAKIGNYNEAKKL 162
            +  +         YT    +      FD     E  A W    + GY  +  +NE   L
Sbjct: 224 LKGQI------KPNYTTLANILPVCASFD-----EYIAYWFGKEIHGY--VLRHNE---L 267

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAW 222
           L      ++  WN+++S Y + G +  A   F  ME RD+VSWN ++ GY    +   A 
Sbjct: 268 L-----ADVFVWNALVSFYLRVGRVEEAELLFRRMELRDLVSWNAIIAGYASNGEWSKAL 322

Query: 223 KFFQKI-------PEQNVVSWVTMLSGYARN---GRMLEARRLFDQMPIRNVVAWNAMIA 272
           + F ++       P+   +  +      +RN   G+M+    L   +   +    NA+++
Sbjct: 323 ELFHELLTLDMIEPDSVTLLCIIPACAQSRNLHVGKMIHGYVLRHPLLCEDTSVGNALVS 382

Query: 273 AYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAK----LDEARRLLDQMPYKNIAA 328
            Y +   IE A   F  +  R+ +SW +M+D  V        L+  R +L +    +   
Sbjct: 383 FYAKCDDIEGAYETFFMISRRDLISWNSMLDALVESGYNTWFLELLRWMLSEGTTPDSVT 442

Query: 329 QTAMISGYVQNKRMDEANQIFDKIGTHDVVC---------WNVMIKGYAQCGRMDEAINL 379
             +++   V   + D+  +       H ++           N ++  YA+CG ++ A  +
Sbjct: 443 ILSVVHFCVNVLKEDKVKEAHSYSIRHRLLASKFDVEPTIGNAILDAYAKCGNIEYASKV 502

Query: 380 FRQMV-NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
           F+ +  N+++VT+  +I+GY     +D+A   F  M     +V WN ++  + +N+    
Sbjct: 503 FQSLSENRNLVTFKAIISGYINCGLLDEAYITFNRMPSSDLSV-WNLMVRLYAENDCSSQ 561

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
           AL +F  +   G K D  T+   L ACA +A++QL +Q H  AI+S +  DL +  +L  
Sbjct: 562 ALGLFHELQAHGIKPDAVTIMSLLPACAEMASVQLIKQCHGYAIRSCF-GDLHLDGALQD 620

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           +YAKCG I  A  LF+     D+I + ++I GYA++G   EA+  F  M+  G+ PD V 
Sbjct: 621 VYAKCGSIGYAFKLFQLIPNKDLIIFTAMIRGYAMHGMGKEALGTFFHMIELGIKPDHVI 680

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
              VLSACSH GLVD GL +F  + +V+ ++  +E Y+C++DLL+R GR+D+AF MV GM
Sbjct: 681 ITTVLSACSHAGLVDEGLNIFYSIEKVHGMKLTMEQYSCVVDLLARGGRIDDAFSMVTGM 740

Query: 619 KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVE 678
            I+ NA IWGTLLGACR H  ++LGR   ++L ++E +    Y +LSN++A   RWD V 
Sbjct: 741 PIEANANIWGTLLGACRTHHEVELGRFVADRLFKIEAENIGNYVVLSNLYAADARWDGVM 800

Query: 679 KVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           ++R  M     +K  GCSWIEV+ + + F++GD       +I   L TL  QI+
Sbjct: 801 EIRKLMRTRDLKKPAGCSWIEVERRKNVFVAGDTSHPHRIDIYRILSTLNGQIK 854



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 113/422 (26%), Positives = 197/422 (46%), Gaps = 60/422 (14%)

Query: 176 SMLSGYTKNGEMHLASKFFE---AMEERDVVSWNLMLDGYVELDDLDS-AWKFFQKI--- 228
           ++L+ Y K G +  + K F    +  +RD + WN++L GY      D+   + F+++   
Sbjct: 64  ALLNMYAKCGALDESKKLFGEIGSCNDRDPIFWNILLSGYAGSRVYDAETLRLFREMHGA 123

Query: 229 --PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-----NVVAWNAMIAAYVQRGQI- 280
             P+ + V+   +L   AR G +   R + +   I+     + +A NA+++ Y + G + 
Sbjct: 124 NYPKPSSVTAAIVLPVCARLGDVYMGRSV-NCYAIKSGLDTHTLAGNALVSMYAKCGLVC 182

Query: 281 EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM-------PYKNIAAQTAMI 333
           ++A   F  + E++ VSW  +I G+     +++A RL   M        Y  +A    + 
Sbjct: 183 QDAYAAFDSIDEKDVVSWNAIISGFAENNLMEDAFRLFSSMLKGQIKPNYTTLANILPVC 242

Query: 334 SGYVQNKRMDEANQIFDKIGTH-----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
           + + +        +I   +  H     DV  WN ++  Y + GR++EA  LFR+M  +D+
Sbjct: 243 ASFDEYIAYWFGKEIHGYVLRHNELLADVFVWNALVSFYLRVGRVEEAELLFRRMELRDL 302

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
           V+WN +IAGYA   +   A+++F E                               L+T 
Sbjct: 303 VSWNAIIAGYASNGEWSKALELFHE-------------------------------LLTL 331

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV-NDLFVGNSLITMYAKCGRIQ 507
           +  + D  TL C + ACA    L +G+ IH   ++   +  D  VGN+L++ YAKC  I+
Sbjct: 332 DMIEPDSVTLLCIIPACAQSRNLHVGKMIHGYVLRHPLLCEDTSVGNALVSFYAKCDDIE 391

Query: 508 NAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
            A   F      D+ISWNS++     +G  T  ++L   M+ EG  PD VT + V+  C 
Sbjct: 392 GAYETFFMISRRDLISWNSMLDALVESGYNTWFLELLRWMLSEGTTPDSVTILSVVHFCV 451

Query: 568 HV 569
           +V
Sbjct: 452 NV 453



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 148/612 (24%), Positives = 245/612 (40%), Gaps = 156/612 (25%)

Query: 13  SYVFNQNKKITQLGKSGRV-EEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           ++    N  ++   K G V ++A   F  + +K+ V++N++IS +A+N  + DA +LF  
Sbjct: 163 THTLAGNALVSMYAKCGLVCQDAYAAFDSIDEKDVVSWNAIISGFAENNLMEDAFRLFSS 222

Query: 72  MPQ-------------------------------------------RNLVSWNSMIAGYL 88
           M +                                            ++  WN++++ YL
Sbjct: 223 MLKGQIKPNYTTLANILPVCASFDEYIAYWFGKEIHGYVLRHNELLADVFVWNALVSFYL 282

Query: 89  HNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN----KEDTACWN 144
              +V+EA  LF +M   DL SW  +I  Y   GE  KA ELF  L      + D+    
Sbjct: 283 RVGRVEEAELLFRRMELRDLVSWNAIIAGYASNGEWSKALELFHELLTLDMIEPDSVTLL 342

Query: 145 AMVAGYAKIGNYNEAKK-----LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE 199
            ++   A+  N +  K      L   +  ++    N+++S Y K  ++  A + F  +  
Sbjct: 343 CIIPACAQSRNLHVGKMIHGYVLRHPLLCEDTSVGNALVSFYAKCDDIEGAYETFFMISR 402

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQ----KIPEQNVVSWVTMLS-------------- 241
           RD++SWN MLD  VE     + W F +     + E      VT+LS              
Sbjct: 403 RDLISWNSMLDALVESG--YNTW-FLELLRWMLSEGTTPDSVTILSVVHFCVNVLKEDKV 459

Query: 242 ----GYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE-RNPV 296
                Y+   R+L ++  FD  P       NA++ AY + G IE A+++F  + E RN V
Sbjct: 460 KEAHSYSIRHRLLASK--FDVEPTIG----NAILDAYAKCGNIEYASKVFQSLSENRNLV 513

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH- 355
           ++  +I GY+    LDEA    ++MP  +++    M+  Y +N    +A  +F ++  H 
Sbjct: 514 TFKAIISGYINCGLLDEAYITFNRMPSSDLSVWNLMVRLYAENDCSSQALGLFHELQAHG 573

Query: 356 ---DVV--------------------CWNVMIKG--------------YAQCGRMDEAIN 378
              D V                    C    I+               YA+CG +  A  
Sbjct: 574 IKPDAVTIMSLLPACAEMASVQLIKQCHGYAIRSCFGDLHLDGALQDVYAKCGSIGYAFK 633

Query: 379 LFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
           LF+ + NKD++ +  MI GYA              MGK                     +
Sbjct: 634 LFQLIPNKDLIIFTAMIRGYAM-----------HGMGK---------------------E 661

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK-SGYVNDLFVGNSLI 497
           AL  F  M + G K DH  +   LSAC+H   +  G  I +   K  G    +   + ++
Sbjct: 662 ALGTFFHMIELGIKPDHVIITTVLSACSHAGLVDEGLNIFYSIEKVHGMKLTMEQYSCVV 721

Query: 498 TMYAKCGRIQNA 509
            + A+ GRI +A
Sbjct: 722 DLLARGGRIDDA 733



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 156/299 (52%), Gaps = 56/299 (18%)

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGT---HDVVCWNVMIKGYAQCGRMD-EAINLFRQ 382
           A   A+++ Y +   +DE+ ++F +IG+    D + WN+++ GYA     D E + LFR+
Sbjct: 60  AVSKALLNMYAKCGALDESKKLFGEIGSCNDRDPIFWNILLSGYAGSRVYDAETLRLFRE 119

Query: 383 M----------------------------------------VNKDIVTWNTMIAGYAQIR 402
           M                                        ++   +  N +++ YA+  
Sbjct: 120 MHGANYPKPSSVTAAIVLPVCARLGDVYMGRSVNCYAIKSGLDTHTLAGNALVSMYAKCG 179

Query: 403 QM-DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
            +  DA   F+ + + ++ VSWNA+ISGF +N    DA ++F  M +   K +++TLA  
Sbjct: 180 LVCQDAYAAFDSIDE-KDVVSWNAIISGFAENNLMEDAFRLFSSMLKGQIKPNYTTLANI 238

Query: 462 LSACAHL---AALQLGRQIHHLAIKSG-YVNDLFVGNSLITMYAKCGRIQNAELLFKDAD 517
           L  CA      A   G++IH   ++    + D+FV N+L++ Y + GR++ AELLF+  +
Sbjct: 239 LPVCASFDEYIAYWFGKEIHGYVLRHNELLADVFVWNALVSFYLRVGRVEEAELLFRRME 298

Query: 518 PVDVISWNSLIAGYAINGNATEAIKLFEEMV-MEGVAPDPVTFIGVLSACS-----HVG 570
             D++SWN++IAGYA NG  ++A++LF E++ ++ + PD VT + ++ AC+     HVG
Sbjct: 299 LRDLVSWNAIIAGYASNGEWSKALELFHELLTLDMIEPDSVTLLCIIPACAQSRNLHVG 357



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 28/242 (11%)

Query: 398 YAQIRQMDDAVKIFEEMGK--RRNTVSWNALISGFLQNE-FHLDALKIFVLMTQEG-KKA 453
           YA+   +D++ K+F E+G    R+ + WN L+SG+  +  +  + L++F  M      K 
Sbjct: 69  YAKCGALDESKKLFGEIGSCNDRDPIFWNILLSGYAGSRVYDAETLRLFREMHGANYPKP 128

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI-QNAELL 512
              T A  L  CA L  + +GR ++  AIKSG       GN+L++MYAKCG + Q+A   
Sbjct: 129 SSVTAAIVLPVCARLGDVYMGRSVNCYAIKSGLDTHTLAGNALVSMYAKCGLVCQDAYAA 188

Query: 513 FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV--- 569
           F   D  DV+SWN++I+G+A N    +A +LF  M+   + P+  T   +L  C+     
Sbjct: 189 FDSIDEKDVVSWNAIISGFAENNLMEDAFRLFSSMLKGQIKPNYTTLANILPVCASFDEY 248

Query: 570 ----------GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMK 619
                     G V   L+  E + +V+    LV  Y        R GR++EA  + + M+
Sbjct: 249 IAYWFGKEIHGYV---LRHNELLADVFVWNALVSFYL-------RVGRVEEAELLFRRME 298

Query: 620 IK 621
           ++
Sbjct: 299 LR 300



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 70/132 (53%), Gaps = 11/132 (8%)

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL 511
           + D+  +A  L +CA L+A++ GR +H   ++ G+V+   V  +L+ MYAKCG +  ++ 
Sbjct: 21  RQDYQAVASILKSCAGLSAIKWGRALHGSIVRIGHVSCHAVSKALLNMYAKCGALDESKK 80

Query: 512 LF------KDADPVDVISWNSLIAGYAING-NATEAIKLFEEMVMEGVA-PDPVTFIGVL 563
           LF       D DP   I WN L++GYA +     E ++LF EM       P  VT   VL
Sbjct: 81  LFGEIGSCNDRDP---IFWNILLSGYAGSRVYDAETLRLFREMHGANYPKPSSVTAAIVL 137

Query: 564 SACSHVGLVDGG 575
             C+ +G V  G
Sbjct: 138 PVCARLGDVYMG 149


>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Vitis vinifera]
          Length = 635

 Score =  354 bits (909), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 198/537 (36%), Positives = 315/537 (58%), Gaps = 13/537 (2%)

Query: 205 WNLMLDGYVELDDLDSAWKFFQKIPEQNVV----SWVTMLSGYARNGRMLEARR---LFD 257
           WN ++  +   +D   A+  F  + E  V     S+  +L   +R G + E  +   L  
Sbjct: 90  WNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLLG 149

Query: 258 QMPI-RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
           +M I  +V   N ++  Y++ G +  A +LF  M +R+ VS+ +MIDGYV+   +  AR 
Sbjct: 150 RMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSARE 209

Query: 317 LLDQMPY--KNIAAQTAMISGYVQNKR-MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRM 373
           L D MP   KN+ +  +MISGY +++  +  A ++F+++   D++ WN MI G  +CG+M
Sbjct: 210 LFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVKCGKM 269

Query: 374 DEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433
           + A +LF QM  +D+V+W  M+ GYA++ ++D A  +F+EM   R+ +S NA+++G++QN
Sbjct: 270 ENAHHLFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEM-PERDVISCNAMMAGYVQN 328

Query: 434 EFHLDALKIFV-LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
              ++AL  F  +++++    D++TL   LSA A L     G  +H     +G+     +
Sbjct: 329 GHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSEKL 388

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
           G +LI MYAKCG I NA  +F+D D   +  WN++I G AI+G    A +LF EM    V
Sbjct: 389 GVALIDMYAKCGSIDNALSVFEDIDDKSIDHWNAIIGGLAIHGLGEVAFELFMEMEKLFV 448

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
            PD +TFIGVL+AC+H GLV  GL  FE M  V+ +EP ++HY CM+D+L RAG ++EA 
Sbjct: 449 KPDDITFIGVLNACNHAGLVKEGLMCFELMRRVHKVEPKLQHYGCMVDILGRAGHVEEAK 508

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672
           + V+ M I+PN  +W TLL ACR H+N  +G    + L  ++    S Y LLSN++A  G
Sbjct: 509 KFVEKMPIEPNDVVWRTLLSACRNHENFTIGEPVAKHLISVDSYNPSSYVLLSNIYAGFG 568

Query: 673 RWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAA 729
            W++V ++R+ M+    +K PGCS IE++  +H F   D    +  EI + L +L+A
Sbjct: 569 MWNDVYRIRMMMKQRDLKKIPGCSQIELEGNVHEFFVRDKSHPQVREIYSMLDSLSA 625



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 145/521 (27%), Positives = 248/521 (47%), Gaps = 92/521 (17%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV----SWNSMIAGYLHNDKVKEARE 98
           Q N   +N++I +++      +A  +F  M +  +     S++ ++        +KE  +
Sbjct: 84  QDNPFLWNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQ 143

Query: 99  LFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIG 154
           +   + R     D+F    ++  Y R G L  AR+LFD +  K D+  +N+M+ GY K G
Sbjct: 144 IHGLLGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRM-MKRDSVSFNSMIDGYVKHG 202

Query: 155 NYNEAKKLLDAMP--SKNIVSWNSMLSGYTKNGE-MHLASKFFEAMEERDVVSWNLMLDG 211
               A++L D MP   KN++SWNSM+SGY ++ E + +A + FE M +RD++SWN M+DG
Sbjct: 203 MVKSARELFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDG 262

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
            V+   +++A   F ++P+++VVSW  M+ GYA+ G +  AR LFD+MP R+V++ NAM+
Sbjct: 263 CVKCGKMENAHHLFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMM 322

Query: 272 AAYVQRGQIEEAARLFIEMPERN---PVSWTTMI--DGYVRIAKLDEARRLLDQMPYKNI 326
           A YVQ G + EA   F +M  R    P + T +I      ++   DE             
Sbjct: 323 AGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEG------------ 370

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
                 +  Y++    D    + +K+G         +I  YA+CG +D A+++F  + +K
Sbjct: 371 ----VALHCYIE----DNGFSLSEKLGV-------ALIDMYAKCGSIDNALSVFEDIDDK 415

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446
            I  WN +I G A     + A ++F EM                          K+FV  
Sbjct: 416 SIDHWNAIIGGLAIHGLGEVAFELFMEME-------------------------KLFV-- 448

Query: 447 TQEGKKADHSTLACALSACAH-------LAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
                K D  T    L+AC H       L   +L R++H +  K  +         ++ +
Sbjct: 449 -----KPDDITFIGVLNACNHAGLVKEGLMCFELMRRVHKVEPKLQHY------GCMVDI 497

Query: 500 YAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAINGNAT 538
             + G ++ A+   +    +P DV+ W +L++    + N T
Sbjct: 498 LGRAGHVEEAKKFVEKMPIEPNDVV-WRTLLSACRNHENFT 537



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/292 (35%), Positives = 163/292 (55%), Gaps = 15/292 (5%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS VF QN  +    + G +  A ++F +M ++++V++NSMI  Y K+G V  AR+LF+ 
Sbjct: 154 GSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSARELFDV 213

Query: 72  MP--QRNLVSWNSMIAGYLHNDK-VKEARELFDKMFRPDLFSWALMITCYTRKGELEKAR 128
           MP  Q+NL+SWNSMI+GY  +++ ++ A ELF++M + DL SW  MI    + G++E A 
Sbjct: 214 MPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVKCGKMENAH 273

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
            LF+ +P K D   W  MV GYAK+G  + A+ L D MP ++++S N+M++GY +NG + 
Sbjct: 274 HLFNQMP-KRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGHLM 332

Query: 189 LASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSW-----VT 238
            A  FF  M  R     D  +  + L    +L   D        I E N  S      V 
Sbjct: 333 EALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEGVALHCYI-EDNGFSLSEKLGVA 391

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
           ++  YA+ G +  A  +F+ +  +++  WNA+I      G  E A  LF+EM
Sbjct: 392 LIDMYAKCGSIDNALSVFEDIDDKSIDHWNAIIGGLAIHGLGEVAFELFMEM 443



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 148/297 (49%), Gaps = 24/297 (8%)

Query: 29  GRVEEAIKI----FSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMI 84
            R EE +++    F +M +++ +++NSMI    K G++ +A  LF QMP+R++VSW +M+
Sbjct: 232 ARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVKCGKMENAHHLFNQMPKRDVVSWANMV 291

Query: 85  AGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF-DLLPNKE---DT 140
            GY    ++  AR LFD+M   D+ S   M+  Y + G L +A   F D+L  KE   D 
Sbjct: 292 DGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDN 351

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN-----SMLSGYTKNGEMHLASKFFE 195
           A     ++  A++G+++E    L      N  S +     +++  Y K G +  A   FE
Sbjct: 352 ATLLITLSAIAQLGHFDEGVA-LHCYIEDNGFSLSEKLGVALIDMYAKCGSIDNALSVFE 410

Query: 196 AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLE 251
            ++++ +  WN ++ G       + A++ F ++ +  V    ++++ +L+     G + E
Sbjct: 411 DIDDKSIDHWNAIIGGLAIHGLGEVAFELFMEMEKLFVKPDDITFIGVLNACNHAGLVKE 470

Query: 252 ARRLFDQMPIRNVVA-----WNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMI 302
               F+ M   + V      +  M+    + G +EEA +   +MP E N V W T++
Sbjct: 471 GLMCFELMRRVHKVEPKLQHYGCMVDILGRAGHVEEAKKFVEKMPIEPNDVVWRTLL 527



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 157/329 (47%), Gaps = 21/329 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I    K G++E A  +F+QM +++ V++ +M+  YAK G ++ AR LF++MP+R+++
Sbjct: 257 NSMIDGCVKCGKMENAHHLFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVI 316

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARELFDL 133
           S N+M+AGY+ N  + EA   F  M       PD  +  + ++   + G  ++   L   
Sbjct: 317 SCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEGVALHCY 376

Query: 134 LPNKEDTACWN---AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           + +   +       A++  YAK G+ + A  + + +  K+I  WN+++ G   +G   +A
Sbjct: 377 IEDNGFSLSEKLGVALIDMYAKCGSIDNALSVFEDIDDKSIDHWNAIIGGLAIHGLGEVA 436

Query: 191 SKFFEAMEERDVVSWNLMLDGYVE-------LDDLDSAWKFFQKIP--EQNVVSWVTMLS 241
            + F  ME+  V   ++   G +        + +    ++  +++   E  +  +  M+ 
Sbjct: 437 FELFMEMEKLFVKPDDITFIGVLNACNHAGLVKEGLMCFELMRRVHKVEPKLQHYGCMVD 496

Query: 242 GYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVS 297
              R G + EA++  ++MPI  N V W  +++A          E  A+  I +   NP S
Sbjct: 497 ILGRAGHVEEAKKFVEKMPIEPNDVVWRTLLSACRNHENFTIGEPVAKHLISVDSYNPSS 556

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
           +  + + Y      ++  R+   M  +++
Sbjct: 557 YVLLSNIYAGFGMWNDVYRIRMMMKQRDL 585



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 118/257 (45%), Gaps = 23/257 (8%)

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
           K+ N   WNA+I  F   E   +A  IF LM + G   D  + +  L AC+ L  ++ G 
Sbjct: 83  KQDNPFLWNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGM 142

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
           QIH L  +    +D+F+ N L+ +Y +CG +  A  LF      D +S+NS+I GY  +G
Sbjct: 143 QIHGLLGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHG 202

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLK----LFECMTEVYAIEPL 591
               A +LF+ M ME         I   S  S     + GL+    LFE M +   I   
Sbjct: 203 MVKSARELFDVMPME-----QKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLIS-- 255

Query: 592 VEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK-L 650
              +  MID   + G+++ A  +   M  K +   W  ++         KLG I + + L
Sbjct: 256 ---WNSMIDGCVKCGKMENAHHLFNQMP-KRDVVSWANMVDG-----YAKLGEIDIARGL 306

Query: 651 SELEPQK--TSCYALLS 665
            +  P++   SC A+++
Sbjct: 307 FDEMPERDVISCNAMMA 323


>gi|302820136|ref|XP_002991736.1| hypothetical protein SELMODRAFT_40989 [Selaginella moellendorffii]
 gi|300140417|gb|EFJ07140.1| hypothetical protein SELMODRAFT_40989 [Selaginella moellendorffii]
          Length = 589

 Score =  354 bits (909), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 188/592 (31%), Positives = 320/592 (54%), Gaps = 16/592 (2%)

Query: 113 LMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV 172
           ++I  Y   G LE+A ++F  +P + +   WN MV+  A+ G+++ AK  L  +P  ++V
Sbjct: 3   ILIASYASAGLLEEAWKIFHAMPGR-NVVSWNTMVSANAQEGDFSRAKIFLARIPQHSLV 61

Query: 173 SWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE----LDDLDSAWKFFQKI 228
           +WN+M+ G+ + G    A + F+A + RDVV WN ++         ++D++S    F +I
Sbjct: 62  AWNAMIGGFAREGRFLEAKRLFDAAKVRDVVIWNALIHAKAAVTGGIEDVES---LFSRI 118

Query: 229 PEQNVVSWVTMLSGYARNGRMLEARRLFD-QMPIRNVVAWNAMIAAYVQRGQIEEAA--R 285
           P  +V+SW  ML+ Y ++G +  A+  FD +M  R+V +WN M AA+ +      AA  +
Sbjct: 119 PCWDVISWNEMLAAYTKHGSLNRAKAFFDTRMLQRDVFSWNTMAAAFARMVHQSGAAGKK 178

Query: 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
            F  MP+ N VSW ++  G       D+A+ L + M  ++  +   M   Y +N   ++A
Sbjct: 179 FFERMPQHNTVSWNSIAQGLSENGLFDDAKSLFESMGDRDSVSMIQMAVTYARNGHPEQA 238

Query: 346 NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMD 405
            ++F +I    V  WN ++  YA+ G + E +  F ++   + +T   +I  Y +   + 
Sbjct: 239 QELFSRISPRTVAVWNALLWSYARNGHLSETLATFHRIPMMNRITCTVIIEMYGECGSLI 298

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA--DHSTLACALS 463
           DA K+F+      N  SWN +++ +  N    +AL +   M   G     D  T    L 
Sbjct: 299 DARKVFDRT-PDPNIFSWNIMLAAYAHNGHSNEALVLSQRMKDSGATVVPDRVTYVILLH 357

Query: 464 ACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
           AC++L AL+ GR IH   I SG  +++ V  +++ MY KCG + +A+++F      DVI 
Sbjct: 358 ACSNLGALREGRMIHASVIASGMESNVVVATAIVNMYGKCGSMGDAKMVFDKMPAKDVIC 417

Query: 524 WNSLIAGYAINGNATEAIKLFEEM--VMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC 581
           WNS+I+ YA+NG    A+ L+  M     G+ P+ +TF+ +LS+CS    +   +  F+ 
Sbjct: 418 WNSMISAYALNGLGKSALDLYARMRHSCRGLKPNRITFVSLLSSCSAANSLREAVFYFQI 477

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIK 641
           M     I+P  EHY  +IDLL R+G++ EA E++  M   P  G W +LL AC  H  ++
Sbjct: 478 MIHDCDIQPGAEHYHFLIDLLGRSGKVAEAEELINSMPFAPGCGAWMSLLAACERHSKVE 537

Query: 642 LGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQP 693
           LGR A +++ E+EP+    Y +L  ++  AG WDE+ +++  ME  G +++P
Sbjct: 538 LGRRAADRVFEMEPKNALAYLMLGKIYVAAGMWDELLQLKKLMEDRGLKREP 589



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 150/515 (29%), Positives = 251/515 (48%), Gaps = 27/515 (5%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I     +G +EEA KIF  M  +N V++N+M+SA A+ G  + A+    ++PQ +LV
Sbjct: 2   NILIASYASAGLLEEAWKIFHAMPGRNVVSWNTMVSANAQEGDFSRAKIFLARIPQHSLV 61

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSW-ALMITCYTRKGELEKARELFDLLPNK 137
           +WN+MI G+    +  EA+ LFD     D+  W AL+       G +E    LF  +P  
Sbjct: 62  AWNAMIGGFAREGRFLEAKRLFDAAKVRDVVIWNALIHAKAAVTGGIEDVESLFSRIPC- 120

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDA-MPSKNIVSWNSMLSGYTKNGEMHLAS--KFF 194
            D   WN M+A Y K G+ N AK   D  M  +++ SWN+M + + +      A+  KFF
Sbjct: 121 WDVISWNEMLAAYTKHGSLNRAKAFFDTRMLQRDVFSWNTMAAAFARMVHQSGAAGKKFF 180

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
           E M + + VSWN +  G  E    D A   F+ + +++ VS + M   YARNG   +A+ 
Sbjct: 181 ERMPQHNTVSWNSIAQGLSENGLFDDAKSLFESMGDRDSVSMIQMAVTYARNGHPEQAQE 240

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
           LF ++  R V  WNA++ +Y + G + E    F  +P  N ++ T +I+ Y     L +A
Sbjct: 241 LFSRISPRTVAVWNALLWSYARNGHLSETLATFHRIPMMNRITCTVIIEMYGECGSLIDA 300

Query: 315 RRLLDQMPYKNIAAQTAMISGYVQNKRMDEA----NQIFDKIGT--HDVVCWNVMIKGYA 368
           R++ D+ P  NI +   M++ Y  N   +EA     ++ D   T   D V + +++   +
Sbjct: 301 RKVFDRTPDPNIFSWNIMLAAYAHNGHSNEALVLSQRMKDSGATVVPDRVTYVILLHACS 360

Query: 369 QCGRMDEAINLFRQMV----NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
             G + E   +   ++      ++V    ++  Y +   M DA  +F++M   ++ + WN
Sbjct: 361 NLGALREGRMIHASVIASGMESNVVVATAIVNMYGKCGSMGDAKMVFDKM-PAKDVICWN 419

Query: 425 ALISGFLQNEFHLDALKIFVLMTQE--GKKADHSTLACALSACAHLAALQ-----LGRQI 477
           ++IS +  N     AL ++  M     G K +  T    LS+C+   +L+         I
Sbjct: 420 SMISAYALNGLGKSALDLYARMRHSCRGLKPNRITFVSLLSSCSAANSLREAVFYFQIMI 479

Query: 478 HHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512
           H   I+ G  +  F    LI +  + G++  AE L
Sbjct: 480 HDCDIQPGAEHYHF----LIDLLGRSGKVAEAEEL 510



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 124/455 (27%), Positives = 214/455 (47%), Gaps = 54/455 (11%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G  V + N  ++   + G    A    +++ Q + V +N+MI  +A+ GR  +A++LF+ 
Sbjct: 26  GRNVVSWNTMVSANAQEGDFSRAKIFLARIPQHSLVAWNAMIGGFAREGRFLEAKRLFDA 85

Query: 72  MPQRNLVSWNSMI-AGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
              R++V WN++I A       +++   LF ++   D+ SW  M+  YT+ G L +A+  
Sbjct: 86  AKVRDVVIWNALIHAKAAVTGGIEDVESLFSRIPCWDVISWNEMLAAYTKHGSLNRAKAF 145

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEA--KKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
           FD    + D   WN M A +A++ + + A  KK  + MP  N VSWNS+  G ++NG   
Sbjct: 146 FDTRMLQRDVFSWNTMAAAFARMVHQSGAAGKKFFERMPQHNTVSWNSIAQGLSENGLFD 205

Query: 189 LASKFFEAMEERDVVS-------------------------------WNLMLDGYVELDD 217
            A   FE+M +RD VS                               WN +L  Y     
Sbjct: 206 DAKSLFESMGDRDSVSMIQMAVTYARNGHPEQAQELFSRISPRTVAVWNALLWSYARNGH 265

Query: 218 LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR 277
           L      F +IP  N ++   ++  Y   G +++AR++FD+ P  N+ +WN M+AAY   
Sbjct: 266 LSETLATFHRIPMMNRITCTVIIEMYGECGSLIDARKVFDRTPDPNIFSWNIMLAAYAHN 325

Query: 278 GQIEEAARLFIEM--------PERNPVSWTTMIDGYVRIAKLDEAR----RLLDQMPYKN 325
           G   EA  L   M        P+R  V++  ++     +  L E R     ++      N
Sbjct: 326 GHSNEALVLSQRMKDSGATVVPDR--VTYVILLHACSNLGALREGRMIHASVIASGMESN 383

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-- 383
           +   TA+++ Y +   M +A  +FDK+   DV+CWN MI  YA  G    A++L+ +M  
Sbjct: 384 VVVATAIVNMYGKCGSMGDAKMVFDKMPAKDVICWNSMISAYALNGLGKSALDLYARMRH 443

Query: 384 ----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
               +  + +T+ ++++  +    + +AV  F+ M
Sbjct: 444 SCRGLKPNRITFVSLLSSCSAANSLREAVFYFQIM 478


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  354 bits (909), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 235/826 (28%), Positives = 385/826 (46%), Gaps = 143/826 (17%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           N++I+ Y K GRV  AR LF+ MP RN VSWN+M++G +      E  E F KM     +
Sbjct: 111 NTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIK 170

Query: 106 PDLFSWALMITCYTRKGEL-EKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKK 161
           P  F  A ++T   R G +  +  ++   +       D     A++  Y   G  + ++K
Sbjct: 171 PSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRK 230

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGE----------------------------------- 186
           + + MP +N+VSW S++ GY+  GE                                   
Sbjct: 231 VFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDESLGRQIIGQVVKSGLESKLAVENS 290

Query: 187 ----------MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI----PEQN 232
                     +  A+  F+ M ERD +SWN +   Y +   ++ +++ F  +     E N
Sbjct: 291 LISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVN 350

Query: 233 VVSWVTMLS-----------------------------------GYARNGRMLEARRLFD 257
             +  T+LS                                    YA  GR +EA  +F 
Sbjct: 351 STTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFK 410

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDE 313
           QMP +++++WN+++A++V  G+  +A  L   M       N V++T+ +         ++
Sbjct: 411 QMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEK 470

Query: 314 ARRL-----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
            R L     +  + Y  I    A++S Y +   M E+ ++  ++   DVV WN +I GYA
Sbjct: 471 GRILHGLVVVSGLFYNQIIGN-ALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYA 529

Query: 369 QCGRMDEAINLFRQM----VNKDIVTW--------------------------------- 391
           +    D+A+  F+ M    V+ + +T                                  
Sbjct: 530 EDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDE 589

Query: 392 ---NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
              N++I  YA+   +  +  +F  +   RN ++WNA+++    +    + LK+   M  
Sbjct: 590 HVKNSLITMYAKCGDLSSSQDLFNGL-DNRNIITWNAMLAANAHHGHGEEVLKLVSKMRS 648

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
            G   D  + +  LSA A LA L+ G+Q+H LA+K G+ +D F+ N+   MY+KCG I  
Sbjct: 649 FGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGE 708

Query: 509 AELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
              +   +    + SWN LI+    +G   E    F EM+  G+ P  VTF+ +L+ACSH
Sbjct: 709 VVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSH 768

Query: 569 VGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWG 628
            GLVD GL  ++ +   + +EP +EH  C+IDLL R+GRL EA   +  M +KPN  +W 
Sbjct: 769 GGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWR 828

Query: 629 TLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688
           +LL +C++H N+  GR A E LS+LEP+  S Y L SNM A  GRW++VE VR  M    
Sbjct: 829 SLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKN 888

Query: 689 AQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNT 734
            +K+  CSW+++K+++ +F  GD    +T EI   L+ +   I+ +
Sbjct: 889 IKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKES 934



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 146/569 (25%), Positives = 264/569 (46%), Gaps = 79/569 (13%)

Query: 143 WNAMVAGYAKIG----NYNEAKKLLDAMPSKNIVSW-----NSMLSGYTKNGEMHLASKF 193
           WN  ++ + +IG          + + A+  K +V       N++++ YTK G +  A   
Sbjct: 70  WNPEISCFDQIGFSQITIETTGRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHL 129

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI------PEQNVVSWVTMLSGYARNG 247
           F+ M  R+ VSWN M+ G V +       +FF+K+      P   V++  ++++   R+G
Sbjct: 130 FDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIA--SLVTACGRSG 187

Query: 248 RML-EARRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMI 302
            M  E  ++   +     + +V    A++  Y   G +  + ++F EMP+RN VSWT+++
Sbjct: 188 SMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLM 247

Query: 303 DGYVRIAKLDE----------ARRLLDQMPYKN----IAAQTAMISGYVQNKRMDEANQI 348
            GY    + +E           R+++ Q+        +A + ++IS       +D AN I
Sbjct: 248 VGYSDKGEPEEVIDIYKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYI 307

Query: 349 FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM------VNKDIVT------------ 390
           FD++   D + WN +   YAQ G ++E+  +F  M      VN   V+            
Sbjct: 308 FDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQ 367

Query: 391 -W--------------------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
            W                    NT++  YA   +  +A  +F++M   ++ +SWN+L++ 
Sbjct: 368 KWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQM-PTKDLISWNSLMAS 426

Query: 430 FLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND 489
           F+ +   LDAL +   M   GK  ++ T   AL+AC      + GR +H L + SG   +
Sbjct: 427 FVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYN 486

Query: 490 LFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549
             +GN+L++MY K G +  +  +       DV++WN+LI GYA + +  +A+  F+ M +
Sbjct: 487 QIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRV 546

Query: 550 EGVAPDPVTFIGVLSACSHVG-LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
           EGV+ + +T + VLSAC   G L++ G  L   +      E        +I + ++ G L
Sbjct: 547 EGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSA-GFESDEHVKNSLITMYAKCGDL 605

Query: 609 DEAFEMVKGMKIKPNAGIWGTLLGACRMH 637
             + ++  G+  + N   W  +L A   H
Sbjct: 606 SSSQDLFNGLDNR-NIITWNAMLAANAHH 633



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 134/597 (22%), Positives = 245/597 (41%), Gaps = 101/597 (16%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM----P 73
           +N  I+ LG  G V+ A  IF QMS+++T+++NS+ +AYA+NG + ++ ++F  M     
Sbjct: 288 ENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHD 347

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWAL----MITCYTRKGELEKARE 129
           + N  + +++++   H D  K  R +   + +    S       ++  Y   G   +A  
Sbjct: 348 EVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANL 407

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSW----------- 174
           +F  +P K D   WN+++A +   G   +A  LL +M S     N V++           
Sbjct: 408 VFKQMPTK-DLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPD 466

Query: 175 ------------------------NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLD 210
                                   N+++S Y K GEM  + +    M  RDVV+WN ++ 
Sbjct: 467 FFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIG 526

Query: 211 GYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPI----- 261
           GY E +D D A   FQ +       N ++ V++LS     G +LE  +      +     
Sbjct: 527 GYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFE 586

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
            +    N++I  Y + G +  +  LF  +  RN ++W  M+         +E  +L+ +M
Sbjct: 587 SDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKM 646

Query: 322 PYKNIAAQ----TAMISGYVQNKRMDEANQIFD---KIG-THDVVCWNVMIKGYAQCGRM 373
               ++      +  +S   +   ++E  Q+     K+G  HD   +N     Y++CG +
Sbjct: 647 RSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEI 706

Query: 374 DEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433
            E + +    VN+ + +WN +I+   +    ++    F E                    
Sbjct: 707 GEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHE-------------------- 746

Query: 434 EFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS-GYVNDLFV 492
                       M + G K  H T    L+AC+H   +  G   + +  +  G    +  
Sbjct: 747 ------------MLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEH 794

Query: 493 GNSLITMYAKCGRIQNAELLFKD--ADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
              +I +  + GR+  AE         P D++ W SL+A   I+GN     K  E +
Sbjct: 795 CICVIDLLGRSGRLAEAETFISKMPMKPNDLV-WRSLLASCKIHGNLDRGRKAAENL 850



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 34/164 (20%)

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
           + +FE+ G+++N   WN  IS F Q  F                              + 
Sbjct: 57  IAMFEKSGRKKN--HWNPEISCFDQIGF------------------------------SQ 84

Query: 468 LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV-DVISWNS 526
           +     GR +H L +K      +   N+LI MY K GR++ A  LF D  PV + +SWN+
Sbjct: 85  ITIETTGRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLF-DIMPVRNEVSWNT 143

Query: 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
           +++G    G   E ++ F +M   G+ P       +++AC   G
Sbjct: 144 MMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSG 187


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  354 bits (909), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 203/648 (31%), Positives = 347/648 (53%), Gaps = 33/648 (5%)

Query: 114 MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP--SKNI 171
           ++  YT   +L     LF   P         ++V+ YA  G   ++    D++P   ++ 
Sbjct: 66  LLHLYTLSPDLATPAVLFRADPGP---VAATSLVSAYAVAGRLRDSAAFFDSVPVARRDT 122

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAME------ERDVVSWNLMLDGYVELDDLDSAWKF- 224
           V  N+M+S + +      A   F ++         D  S+  +L    ++ DL  +    
Sbjct: 123 VLHNAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQ 182

Query: 225 ----FQKIPEQNVVSWV-TMLSGYAR---NGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ 276
                 K+    V+S    +++ Y +    G   +AR++ D+MP ++ + W  ++  +V+
Sbjct: 183 LHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVR 242

Query: 277 RGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAM 332
           +G +  A   F E+     V W  MI GYV+     EA  L  +M  K I       T++
Sbjct: 243 KGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSL 302

Query: 333 IS-----GYVQNKRMDEANQIF---DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
           +S     G+  + +      I    D +    +   N ++  Y++ G++  A  +F  M 
Sbjct: 303 LSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMT 362

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
            KD+V+WNT+++GY +   +D+A +IF+EM   ++ +SW  ++SG++      DALK+F 
Sbjct: 363 LKDVVSWNTILSGYIESGCLDNAARIFKEM-PYKSELSWMVMVSGYVHGGLAEDALKLFN 421

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG 504
            M  E  K    T A A++AC  L AL+ G+Q+H   ++ G+      GN+L+TMYA+CG
Sbjct: 422 QMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCG 481

Query: 505 RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLS 564
            +++A L+F     VD +SWN++I+    +G+  EA++LF++MV +G+ PD ++F+ +L+
Sbjct: 482 AVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILT 541

Query: 565 ACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNA 624
           AC+H GLVD G + FE M   + I P  +HYA +IDLL RAGR+ EA +++K M  +P  
Sbjct: 542 ACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTP 601

Query: 625 GIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSM 684
            IW  +L  CR++ +++LG  A ++L ++ P+    Y LLSN ++ AGRW +  +VR  M
Sbjct: 602 AIWEAILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLM 661

Query: 685 EGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
              G +K+PGCSWIEV N++H FL GD K     E+   L+ + A++R
Sbjct: 662 RDRGVKKEPGCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGAKMR 709



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 150/556 (26%), Positives = 259/556 (46%), Gaps = 54/556 (9%)

Query: 42  SQKNTVTYNSMISAYAKNGRVNDARKLFEQMP--QRNLVSWNSMIAGYLHNDKVKEAREL 99
           +    V   S++SAYA  GR+ D+   F+ +P  +R+ V  N+MI+ +        A  +
Sbjct: 85  ADPGPVAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSV 144

Query: 100 F------DKMFRPDLFSWALMITCYTRKGEL-----EKARELFDLLPNKEDTACWNAMVA 148
           F      D   RPD +S+  +++   +  +L      +       L      +  NA++A
Sbjct: 145 FRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIA 204

Query: 149 GYAKI---GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW 205
            Y K    G   +A+K+LD MP K+ ++W +++ G+ + G++H A   FE ++    V W
Sbjct: 205 LYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVW 264

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFDQ--- 258
           N M+ GYV+      A++ F+++  + +     ++ ++LS  A  G  L  + +  Q   
Sbjct: 265 NAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIR 324

Query: 259 -----MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDE 313
                +P   +   NA++  Y + G+I  A ++F  M  ++ VSW T++ GY+    LD 
Sbjct: 325 LQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDN 384

Query: 314 ARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV-VCWNVMIKGYAQCGR 372
           A R+  +MPYK+  +   M+SGYV     ++A ++F+++ + DV  C        A CG 
Sbjct: 385 AARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGE 444

Query: 373 ---MDEAINLFRQMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
              +     L   +V           N ++  YA+   + DA  +F  M    ++VSWNA
Sbjct: 445 LGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVM-PNVDSVSWNA 503

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHH-----L 480
           +IS   Q+    +AL++F  M  +G   D  +    L+AC H   +  G Q         
Sbjct: 504 MISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDF 563

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAINGN-- 536
            I  G   D +    LI +  + GRI  A  L K    +P   I W ++++G  ING+  
Sbjct: 564 GISPG--EDHYA--RLIDLLGRAGRIGEARDLIKTMPFEPTPAI-WEAILSGCRINGDME 618

Query: 537 --ATEAIKLFEEMVME 550
             A  A +LF +MV E
Sbjct: 619 LGAYAADQLF-KMVPE 633



 Score =  145 bits (367), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 118/457 (25%), Positives = 206/457 (45%), Gaps = 100/457 (21%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL 88
           G   +A K+  +M +K+ +T+ +++  + + G V+ AR  FE++     V WN+MI+GY+
Sbjct: 213 GVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYV 272

Query: 89  HNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKAR----ELFDLLPNKEDT 140
            +    EA ELF +M      PD F++  +++     G     +    +   L P+    
Sbjct: 273 QSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPE 332

Query: 141 ACW---NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
           A     NA+V  Y+K G    A K+ D+M  K++VSWN++LSGY ++G +  A++ F+ M
Sbjct: 333 AALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEM 392

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV------------------------ 233
             +  +SW +M+ GYV     + A K F ++  ++V                        
Sbjct: 393 PYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGK 452

Query: 234 ---------------VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
                           +   +L+ YAR G + +AR +F  MP  + V+WNAMI+A  Q G
Sbjct: 453 QLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHG 512

Query: 279 QIEEAARLFIEM------PERNPVSWTTMI-----------------------------D 303
              EA  LF +M      P+R  +S+ T++                             D
Sbjct: 513 HGREALELFDQMVAQGIYPDR--ISFLTILTACNHAGLVDDGFQYFESMERDFGISPGED 570

Query: 304 GYVRI-------AKLDEARRLLDQMPYKNIAAQ-TAMISGYVQNKRMD----EANQIFDK 351
            Y R+        ++ EAR L+  MP++   A   A++SG   N  M+     A+Q+F  
Sbjct: 571 HYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKM 630

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
           +  HD   + ++   Y+  GR  +A  + + M ++ +
Sbjct: 631 VPEHDGT-YILLSNTYSAAGRWVDAARVRKLMRDRGV 666



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 116/516 (22%), Positives = 222/516 (43%), Gaps = 109/516 (21%)

Query: 22  ITQLGKSGRVEEAIKIFSQM--SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRN--- 76
           ++    +GR+ ++   F  +  ++++TV +N+MISA+A+      A  +F  +   +   
Sbjct: 96  VSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLASDDSL 155

Query: 77  ----------------------------------------LVSWNSMIAGYLHNDK---V 93
                                                   L   N++IA Y+  D     
Sbjct: 156 RPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVT 215

Query: 94  KEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKI 153
           ++AR++ D+M   D  +W  ++  + RKG++  AR  F+ +  + D   WNAM++GY + 
Sbjct: 216 RDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVV-WNAMISGYVQS 274

Query: 154 GNYNEAKKLLDAMPSKNI----VSWNSMLSG----------------------------- 180
           G   EA +L   M SK I     ++ S+LS                              
Sbjct: 275 GMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAA 334

Query: 181 ----------YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPE 230
                     Y+K+G++ +A+K F++M  +DVVSWN +L GY+E   LD+A + F+++P 
Sbjct: 335 LPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPY 394

Query: 231 QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARL 286
           ++ +SW+ M+SGY   G   +A +LF+QM   +V      +   +AA  + G ++   +L
Sbjct: 395 KSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQL 454

Query: 287 FIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRM 342
              +     E +  +   ++  Y R   + +AR +   MP  +  +  AMIS   Q+   
Sbjct: 455 HAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHG 514

Query: 343 DEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQM-----VNKDIVTWNT 393
            EA ++FD++       D + +  ++      G +D+    F  M     ++     +  
Sbjct: 515 REALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYAR 574

Query: 394 MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
           +I    +  ++ +A  + + M        W A++SG
Sbjct: 575 LIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSG 610



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 155/297 (52%), Gaps = 21/297 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +T   KSG++  A KIF  M+ K+ V++N+++S Y ++G +++A ++F++MP ++ +
Sbjct: 339 NALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSEL 398

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLL 134
           SW  M++GY+H    ++A +LF++M     +P  +++A  +      G L+  ++L   L
Sbjct: 399 SWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHL 458

Query: 135 PN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
                +   +  NA++  YA+ G   +A+ +   MP+ + VSWN+M+S   ++G    A 
Sbjct: 459 VQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREAL 518

Query: 192 KFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSG 242
           + F+ M  +    D +S+  +L        +D  +++F+ +     +S     +  ++  
Sbjct: 519 ELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDL 578

Query: 243 YARNGRMLEARRLFDQMPIRNVVA-WNAMIAAYVQRGQIEEAA----RLFIEMPERN 294
             R GR+ EAR L   MP     A W A+++     G +E  A    +LF  +PE +
Sbjct: 579 LGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVPEHD 635


>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
 gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
          Length = 807

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 224/734 (30%), Positives = 367/734 (50%), Gaps = 40/734 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            F  N+ +     SG    A++ F  + + N  +YN+ ISA  + G +  AR L  +MP 
Sbjct: 45  TFLLNRLVELYSLSGLPCHALRAFRALPRPNVYSYNAAISAACRAGDLAAARDLLGRMPD 104

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAREL 130
           RN VSWN++IA    +D   EA E++  M +    P  F+ A +++       L+  R  
Sbjct: 105 RNAVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAVAALDDGRRC 164

Query: 131 FDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
             L        +    N ++  Y K G+  +A +L D M S N VS+ +M+ G  ++G +
Sbjct: 165 HGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNEVSFTAMMGGLAQSGAV 224

Query: 188 HLASKFFEAMEER----DVVSWNLMLDGYVELDDLD----SAWKFFQKI----------P 229
             A + F  M       D V+ + +L    +    D     A +  Q I           
Sbjct: 225 DDALRLFARMSRSAIRVDPVAVSSVLGACAQACAGDYNVARAIRLAQSIHALVVRKGFDS 284

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIE 289
           +Q+V +  +++  YA+  +M EA ++F+ M   ++V+WN ++  Y Q G  E A  +   
Sbjct: 285 DQHVGN--SLIDMYAKGMKMDEAMKVFESMSSVSIVSWNILVTGYGQLGCYERALEVLDL 342

Query: 290 MPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
           M E     N V+++ M+   ++   +  AR + D++   ++     ++SGY Q +   + 
Sbjct: 343 MQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKISKPSVTTWNTLLSGYGQEELHQDT 402

Query: 346 NQIFDKIGTHDV----VCWNVMIKGYAQCGRMDEAINL----FRQMVNKDIVTWNTMIAG 397
            ++F ++   +V        V++   ++ G ++    +     + +++ D+   + +I  
Sbjct: 403 IELFRRMQHQNVQPDRTTLAVILSTCSRLGILELGKQVHSASVKLLLHNDMFVASGLIDM 462

Query: 398 YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHST 457
           Y++  Q+  A  IF  M   R+ V WN++ISG   +  + +A   F  M + G     S+
Sbjct: 463 YSKCGQVGIAQIIFNMM-TERDVVCWNSMISGLAIHSLNEEAFDFFKQMRENGMFPTESS 521

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD 517
            A  +++CA L+++  GRQIH   +K GY  +++VG+SLI MYAKCG + +A L F    
Sbjct: 522 YASMINSCARLSSIPQGRQIHAQVLKDGYDQNVYVGSSLIDMYAKCGNMDDARLFFNCMI 581

Query: 518 PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLK 577
             ++++WN +I GYA NG   +A++LFE M+     PD VTFI VL+ CSH GLVD  + 
Sbjct: 582 VKNIVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDEAIA 641

Query: 578 LFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMH 637
            F  M   Y I PLVEHY C+ID L RAGR  E   ++  M  K +A +W  LL AC +H
Sbjct: 642 YFNSMESNYGIRPLVEHYTCLIDALGRAGRFAEVVAVIDKMPYKDDAILWEVLLAACVVH 701

Query: 638 QNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSW 697
            N +LG  A + L  L+P+  S Y LLSN++A  GR  +   VR  M   G  K  G SW
Sbjct: 702 HNAELGEFAAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAVRALMSSRGVVKGRGYSW 761

Query: 698 IEVKNQIHTFLSGD 711
           +  K+    F+  D
Sbjct: 762 VNHKDGARAFMVAD 775



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 157/616 (25%), Positives = 290/616 (47%), Gaps = 81/616 (13%)

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           DT   N +V  Y+  G    A +   A+P  N+ S+N+ +S   + G++  A      M 
Sbjct: 44  DTFLLNRLVELYSLSGLPCHALRAFRALPRPNVYSYNAAISAACRAGDLAAARDLLGRMP 103

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV----SWVTMLSG------------ 242
           +R+ VSWN ++      D    A + ++ + ++ +     +  ++LS             
Sbjct: 104 DRNAVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAVAALDDGRR 163

Query: 243 -----------------------YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ 279
                                  Y + G + +A RLFD M   N V++ AM+    Q G 
Sbjct: 164 CHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNEVSFTAMMGGLAQSGA 223

Query: 280 IEEAARLFIEMPER----NPVSWTTMIDG-------------YVRIAKLDEA---RRLLD 319
           +++A RLF  M       +PV+ ++++                +R+A+   A   R+  D
Sbjct: 224 VDDALRLFARMSRSAIRVDPVAVSSVLGACAQACAGDYNVARAIRLAQSIHALVVRKGFD 283

Query: 320 QMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
              +       ++I  Y +  +MDEA ++F+ + +  +V WN+++ GY Q G  + A+ +
Sbjct: 284 SDQH----VGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNILVTGYGQLGCYERALEV 339

Query: 380 FRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEF 435
              M       + VT++ M+A   + R +  A  +F+++ K   T +WN L+SG+ Q E 
Sbjct: 340 LDLMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKISKPSVT-TWNTLLSGYGQEEL 398

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS 495
           H D +++F  M  +  + D +TLA  LS C+ L  L+LG+Q+H  ++K    ND+FV + 
Sbjct: 399 HQDTIELFRRMQHQNVQPDRTTLAVILSTCSRLGILELGKQVHSASVKLLLHNDMFVASG 458

Query: 496 LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555
           LI MY+KCG++  A+++F      DV+ WNS+I+G AI+    EA   F++M   G+ P 
Sbjct: 459 LIDMYSKCGQVGIAQIIFNMMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRENGMFPT 518

Query: 556 PVTFIGVLSACSHVGLVDGGLKLF-ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEM 614
             ++  ++++C+ +  +  G ++  + + + Y     V   + +ID+ ++ G +D+A   
Sbjct: 519 ESSYASMINSCARLSSIPQGRQIHAQVLKDGYDQNVYVG--SSLIDMYAKCGNMDDARLF 576

Query: 615 VKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL-----SELEPQKTSCYALLSNMHA 669
              M +K N   W  ++      QN   G  AVE       ++ +P   +  A+L+   +
Sbjct: 577 FNCMIVK-NIVAWNEMIHG--YAQN-GFGEKAVELFEYMLTTKQKPDSVTFIAVLTGC-S 631

Query: 670 EAGRWDEVEKVRVSME 685
            +G  DE      SME
Sbjct: 632 HSGLVDEAIAYFNSME 647


>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 219/708 (30%), Positives = 346/708 (48%), Gaps = 97/708 (13%)

Query: 120 RKGELEKARELFDL-LPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN----I 171
           ++   ++A E FD  L N     + + + ++V   A   + + AKK+ D +   N    I
Sbjct: 135 KQHHYKEALEAFDFHLKNSNSHFEPSTYTSLVLACANFRSLDYAKKIHDHVLKSNYQPSI 194

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFF------ 225
           +  N M++ Y K G M  A K F+ M+  +VVSW  M+ GY +    + A   +      
Sbjct: 195 ILQNHMINMYGKCGSMKDARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRS 254

Query: 226 QKIPEQNVVSWV---TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEE 282
            + P+Q     V     ++G    GR L A  +       ++ + NA+I+ Y   GQIE 
Sbjct: 255 GQFPDQLTFGSVIKACYIAGDIDLGRQLHAHVIKSWFG-HHLTSQNALISMYTNFGQIEH 313

Query: 283 AARLFIEMPERNPVSWTTMIDGYVRIAKLDEA----RRLLDQMPY--------------- 323
           A+ +F  +P ++ +SW TMI GY+++    EA    R LL Q  Y               
Sbjct: 314 ASNVFTRIPTKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACS 373

Query: 324 ---------------------KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNV 362
                                +N+ A  ++   Y +   +  A   F +I   D+V WN 
Sbjct: 374 SLLELEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNA 433

Query: 363 MIKGYAQCGRMDEAINLFRQMV-------------------------------------- 384
           +I  +A  G  +EAI+ FRQM+                                      
Sbjct: 434 IIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSYIVKIG 493

Query: 385 -NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
            +K+I   N+++  Y +   + DA+ +F ++ +  N VSWNA++S  LQ +   +  +++
Sbjct: 494 FDKEITVCNSLLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSACLQKKQEGETFRLY 553

Query: 444 VLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
             M   G K D  T+   L  CA L +L +G Q+H  +IKSG + D+ V N LI MYAKC
Sbjct: 554 KEMHFSGNKPDSITITTLLGTCAELTSLGVGNQVHCYSIKSGLILDVSVCNGLIDMYAKC 613

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
           G +++A  +F     +D++SW+SLI GYA  G   EA+ LF  M   GV P+ VT++G L
Sbjct: 614 GSLKHARDVFDSTQNLDIVSWSSLIVGYAQCGLGHEALNLFRIMTNLGVQPNEVTYLGAL 673

Query: 564 SACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPN 623
           SACSH+GLV+ G +L++ M   + I P  EH++C++DLL+RAG L EA   ++   +  +
Sbjct: 674 SACSHIGLVEEGWRLYKSMETEHGIPPTREHFSCIVDLLARAGCLHEAETFIQKSGLDAD 733

Query: 624 AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVS 683
              W TLL AC+ H N+ +       + +L+P  ++   +L N+HA AG W+EV K+R  
Sbjct: 734 ITAWKTLLAACKTHNNVDIAERGAGNILKLDPSNSAAMVMLCNIHASAGNWEEVAKLRKL 793

Query: 684 MEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           M+  G QK PG SWIEVK++ H F S D    +   I   L+ L +Q+
Sbjct: 794 MKQMGVQKVPGQSWIEVKDKFHIFFSEDSSHPQRNLIYTMLEELWSQV 841



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 122/496 (24%), Positives = 218/496 (43%), Gaps = 99/496 (19%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ--- 74
           QN  I   GK G +++A K+F  M   N V++ SMIS Y++NG+ NDA  ++ QM +   
Sbjct: 197 QNHMINMYGKCGSMKDARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQ 256

Query: 75  ------------------------------------RNLVSWNSMIAGYLHNDKVKEARE 98
                                                +L S N++I+ Y +  +++ A  
Sbjct: 257 FPDQLTFGSVIKACYIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASN 316

Query: 99  LFDKMFRPDLFSWALMITCYTRKGELEKARELF-DLL------PNK-----EDTAC---- 142
           +F ++   DL SW  MIT Y + G   +A  LF DLL      PN+       +AC    
Sbjct: 317 VFTRIPTKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLL 376

Query: 143 ---WNAMVAG--------------------YAKIGNYNEAKKLLDAMPSKNIVSWNSMLS 179
              +   V G                    YAK G    AK     + + +IVSWN++++
Sbjct: 377 ELEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIA 436

Query: 180 GYTKNGEMHLASKFFEAMEE----RDVVSWNLML---DGYVELDDLDSAWKFFQKIP-EQ 231
            +  NG+ + A  FF  M       D +++  +L      V L+       +  KI  ++
Sbjct: 437 AFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSYIVKIGFDK 496

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLFIEM 290
            +    ++L+ Y +   + +A  +F  +    N+V+WNA+++A +Q+ Q  E  RL+ EM
Sbjct: 497 EITVCNSLLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSACLQKKQEGETFRLYKEM 556

Query: 291 P----ERNPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRM 342
                + + ++ TT++     +  L    ++    +      +++    +I  Y +   +
Sbjct: 557 HFSGNKPDSITITTLLGTCAELTSLGVGNQVHCYSIKSGLILDVSVCNGLIDMYAKCGSL 616

Query: 343 DEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI----VTWNTMIAGY 398
             A  +FD     D+V W+ +I GYAQCG   EA+NLFR M N  +    VT+   ++  
Sbjct: 617 KHARDVFDSTQNLDIVSWSSLIVGYAQCGLGHEALNLFRIMTNLGVQPNEVTYLGALSAC 676

Query: 399 AQIRQMDDAVKIFEEM 414
           + I  +++  ++++ M
Sbjct: 677 SHIGLVEEGWRLYKSM 692


>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Vitis vinifera]
          Length = 755

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 218/684 (31%), Positives = 358/684 (52%), Gaps = 60/684 (8%)

Query: 88  LHNDKVKEARELFDKM-FRPDLFSWALMITCYTRKGELEKARELFD-LLPNKE--DTACW 143
           L N+ +K    L  K  F   L ++A +I+  +    LE  +++ D +L +K   D    
Sbjct: 42  LFNEAIKAFEFLQKKTGFCLTLSTYAYLISACSYLRSLEHGKKIHDHMLKSKSHPDLTLQ 101

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N ++  Y K  +  +A+K+ DAMP +N+VSW S+++GY++NG+   A +F+  M +  V+
Sbjct: 102 NHILNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVM 161

Query: 204 ----SWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARNGRMLEARRL 255
               ++  ++     L D+    +    + +     ++++   ++S Y ++  +++A  +
Sbjct: 162 PDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDV 221

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLD--- 312
           F +M  R++++W +MIA + Q G   EA   F EM  +        I G V  A      
Sbjct: 222 FSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQ 281

Query: 313 -EARRLLDQMPYK-----NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG 366
            E  R L  M  K     ++ A  ++   Y +   +  A  +F +IG  D+V WN +I G
Sbjct: 282 PEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAG 341

Query: 367 YAQCGRMDEAINLFRQM----------------------------------VNK-----D 387
           +A  G   EAI  F QM                                  +NK     D
Sbjct: 342 FAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLD 401

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMT 447
           +   NT++  YA+  ++ DA+  FEEM    + VSWNA+++  ++++   +  ++  LM 
Sbjct: 402 VPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMC 461

Query: 448 QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
               + D+ TL   L A A   ++++G Q+H  A+K+G   D  V N LI +YAKCG ++
Sbjct: 462 ISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLK 521

Query: 508 NAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
            A  +F      DV+SW+SLI GYA  G   EA+KLF+ M    V P+ VTF+GVL+ACS
Sbjct: 522 TAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACS 581

Query: 568 HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIW 627
           HVGLV+ G KL+  M + + I P  EH +CM+DLL+RAG L+EA   +  M   P+  +W
Sbjct: 582 HVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIVVW 641

Query: 628 GTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGS 687
            TLL AC+ H N+ +G+ A E + +++P  ++ + LL N++A  G W++V ++R  M+  
Sbjct: 642 KTLLAACKTHGNVDVGKRAAENILKIDPSNSAAHVLLCNIYASKGNWEDVARLRSLMKQR 701

Query: 688 GAQKQPGCSWIEVKNQIHTFLSGD 711
           G +K PG SWIEVK++IH F   D
Sbjct: 702 GVRKVPGQSWIEVKDRIHVFFVED 725



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 131/589 (22%), Positives = 248/589 (42%), Gaps = 106/589 (17%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           QN  +   GK   +++A K+F  M ++N V++ S+I+ Y++NG+  +A + + QM Q  +
Sbjct: 101 QNHILNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGV 160

Query: 78  V----SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWAL----MITCYTRKGELEKARE 129
           +    ++ S+I        +   R+L   + + +  +  +    +I+ YT+   +  A +
Sbjct: 161 MPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALD 220

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG---- 185
           +F  +  + D   W +M+AG++++G   EA      M  + +   N  + G   +     
Sbjct: 221 VFSRMATR-DLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSL 279

Query: 186 -------EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
                  ++H  S  F     RDV +   + D Y +   L  A   F +I   ++V+W  
Sbjct: 280 LQPEYGRQLHGMSIKFGL--GRDVFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNA 337

Query: 239 MLSGYARNGRMLEARRLFDQM----------PIR-------------------------- 262
           +++G+A  G   EA   F QM           +R                          
Sbjct: 338 IIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQVHGYINKMG 397

Query: 263 ---NVVAWNAMIAAYVQRGQIEEAARLFIEM-PERNPVSWTTMIDGYVRIAKLDEARRLL 318
              +V   N ++  Y +  ++ +A   F EM    + VSW  ++   +R  + +E  RLL
Sbjct: 398 LDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLL 457

Query: 319 DQMPYK----NIAAQTAMISGYVQNKRMDEANQIFD---KIGTH-DVVCWNVMIKGYAQC 370
             M       +    T ++    +   ++  NQ+     K G + D    N +I  YA+C
Sbjct: 458 KLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKC 517

Query: 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
           G +  A  +F  M+N D+V+W+++I GYAQ    ++A+K+F+ M  RR  V         
Sbjct: 518 GSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTM--RRLDV--------- 566

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS-GYVND 489
                                K +H T    L+AC+H+  ++ G +++    K  G    
Sbjct: 567 ---------------------KPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPT 605

Query: 490 LFVGNSLITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAINGN 536
               + ++ + A+ G +  AE        DP D++ W +L+A    +GN
Sbjct: 606 REHCSCMVDLLARAGCLNEAEGFIHQMAFDP-DIVVWKTLLAACKTHGN 653



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 99/431 (22%), Positives = 200/431 (46%), Gaps = 54/431 (12%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G+++  QN  I+   KS  + +A+ +FS+M+ ++ +++ SMI+ +++ G   +A   F++
Sbjct: 196 GAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKE 255

Query: 72  MPQRNLVSWNSMIAGYLHND-----KVKEARELFDKMFR----PDLFSWALMITCYTRKG 122
           M  + +   N  I G + +      + +  R+L     +     D+F+   +   Y + G
Sbjct: 256 MLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCG 315

Query: 123 ELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSML 178
            L  AR +F  +  + D   WNA++AG+A  G+  EA      M  + +    ++  S+L
Sbjct: 316 LLSCARVVFYQI-GRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLL 374

Query: 179 SGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
              T   E+      ++ M+          + GY+    LD        +P  N     T
Sbjct: 375 CACTSPSEL------YQGMQ----------VHGYINKMGLD------LDVPVCN-----T 407

Query: 239 MLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLF----IEMPER 293
           +L+ YA+   + +A   F++M    ++V+WNA++ A ++  Q EE  RL     I     
Sbjct: 408 LLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRP 467

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG----YVQNKRMDEANQIF 349
           + ++ T ++        ++   ++        +   T++ +G    Y +   +  A++IF
Sbjct: 468 DYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIF 527

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI----VTWNTMIAGYAQIRQMD 405
           D +   DVV W+ +I GYAQ G  +EA+ LF+ M   D+    VT+  ++   + +  ++
Sbjct: 528 DSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVE 587

Query: 406 DAVKIFEEMGK 416
           +  K++  M K
Sbjct: 588 EGWKLYGTMEK 598



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 15/169 (8%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           +T   N +I  YAK G +  A K+F+ M   ++VSW+S+I GY      +EA +LF  M 
Sbjct: 503 DTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMR 562

Query: 105 R----PDLFSWALMITCYTRKGELEKAREL-------FDLLPNKEDTACWNAMVAGYAKI 153
           R    P+  ++  ++T  +  G +E+  +L       F + P +E  +C   MV   A+ 
Sbjct: 563 RLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSC---MVDLLARA 619

Query: 154 GNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
           G  NEA+  +  M    +IV W ++L+    +G + +  +  E + + D
Sbjct: 620 GCLNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENILKID 668


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 225/801 (28%), Positives = 358/801 (44%), Gaps = 159/801 (19%)

Query: 88  LHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMV 147
           L   +   AR L    F P  F    ++  Y R G    A  +FD +P++ DT  WN M+
Sbjct: 35  LTTGQAAHARMLVSG-FMPTTFVSNCLLQMYARCGGTAHAHGVFDTMPHR-DTVSWNTML 92

Query: 148 AGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER------- 200
             Y   G+ + A  L   MP  ++VSWN+++SGY ++G    +      M  R       
Sbjct: 93  TAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRT 152

Query: 201 --------------------------------DVVSWNLMLDGYVELDDLDSAWKFFQKI 228
                                           DV + + ++D Y +   LD A +FF  +
Sbjct: 153 TLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGM 212

Query: 229 PEQNVVSWVTMLSGYARNGRMLEARRLFDQM----------------------------- 259
            E+N VSW   ++G  +N +      LF QM                             
Sbjct: 213 GERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTAR 272

Query: 260 -----PIRNV-----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIA 309
                 I+NV     V   A++  Y + G + +A R FI +P  N  +   M+ G VR  
Sbjct: 273 QLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTG 332

Query: 310 KLDEARRLL----------DQMPYKNIAAQTAMISGYVQN-------------------- 339
              EA +L           D +    + +  A + GY Q                     
Sbjct: 333 LGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRN 392

Query: 340 ---------KRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK---- 386
                    K + EA  +F ++   D V WN +I    Q    ++ I    +M+      
Sbjct: 393 AILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEP 452

Query: 387 -----------------------------------DIVTWNTMIAGYAQIRQMDDAVKIF 411
                                              D    +T++  Y +   + +A K+ 
Sbjct: 453 DDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLH 512

Query: 412 EEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAAL 471
           + +G +   VSWN++ISGF   +   +A + F  M   G K DH T A  L  CA+LA +
Sbjct: 513 DRIGGQ-ELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATI 571

Query: 472 QLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGY 531
           +LG+QIH   IK   + D ++ ++L+ MYAKCG + ++ L+F+ A  +D +SWN++I GY
Sbjct: 572 ELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKARKLDFVSWNAMICGY 631

Query: 532 AINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL 591
           A++G   EA+++FE M    V P+  TF+ VL ACSHVGL+D G + F  MT  Y + P 
Sbjct: 632 ALHGQGLEALEMFERMQRANVVPNHATFVAVLRACSHVGLLDDGCQYFHLMTSRYKLVPQ 691

Query: 592 VEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLS 651
           +EH+ACM+D+L R+    EA E ++ M I+ +A +W TLL  C++ Q++++   A   + 
Sbjct: 692 LEHFACMVDILGRSKGPQEALEFIRSMPIEADAVVWKTLLSICKIRQDVEVAETAASNVL 751

Query: 652 ELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD 711
            L+P   S Y LLSN++A +G+W +V + R  M     +K+PGCSWIEV++++H FL GD
Sbjct: 752 RLDPDDASVYILLSNVYAGSGKWVDVSRTRRLMRQGRLRKEPGCSWIEVQSEMHGFLVGD 811

Query: 712 PKQCRTAEICNTLKTLAAQIR 732
               R+ E+   L +L  +++
Sbjct: 812 KVHPRSKEVYEMLNSLIGEMK 832



 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 167/648 (25%), Positives = 272/648 (41%), Gaps = 92/648 (14%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
            T   N ++  YA+ G    A  +F+ MP R+ VSWN+M+  Y+H      A  LF  M 
Sbjct: 53  TTFVSNCLLQMYARCGGTAHAHGVFDTMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMP 112

Query: 105 RPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK--KL 162
            PD+ SW  +I+ Y + G    +  L   +  +        +       G  ++      
Sbjct: 113 DPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQ 172

Query: 163 LDAMPSK-----NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDD 217
           + A+  K     ++ + ++++  Y K   +  A +FF  M ER+ VSW   + G V+ + 
Sbjct: 173 IHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQ 232

Query: 218 LDSAWKFFQKIPEQNV-VSWVTMLSGYARNGRM--LEARRLFDQMPIRNV-----VAWNA 269
                + F ++    + VS     S +     M  L   R      I+NV     V   A
Sbjct: 233 YTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTA 292

Query: 270 MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
           ++  Y + G + +A R FI +P  N  +   M+ G VR     EA +L   M    +   
Sbjct: 293 IVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFD 352

Query: 330 TAMISGYVQNKRMDEANQIFDKIGTH----------DVVCWNVMIKGYAQCGRMDEAINL 379
              +SG        E    F  +  H          DV   N ++  Y +C  + EA  +
Sbjct: 353 VISLSGVF--SACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLV 410

Query: 380 FRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDA 439
           F++M  +D V+WN                                A+I+   QNE + D 
Sbjct: 411 FQEMEQRDSVSWN--------------------------------AIIAALEQNECYEDT 438

Query: 440 LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
           +     M + G + D  T    L ACA L +L+ G  +H  AIKSG   D FV ++++ M
Sbjct: 439 IAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDM 498

Query: 500 YAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTF 559
           Y KCG I  A+ L       +++SWNS+I+G+++   + EA + F EM+  GV PD  T+
Sbjct: 499 YCKCGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTY 558

Query: 560 IGVLSACSHVGLVDGGLKLF------ECMTEVYAIEPLVEHYA-C--MID---LLSRAGR 607
             VL  C+++  ++ G ++       E + + Y    LV+ YA C  M D   +  +A +
Sbjct: 559 ATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKARK 618

Query: 608 LD------------------EAFEMVKGMK---IKPNAGIWGTLLGAC 634
           LD                  EA EM + M+   + PN   +  +L AC
Sbjct: 619 LDFVSWNAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLRAC 666



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/219 (26%), Positives = 91/219 (41%), Gaps = 45/219 (20%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK------- 514
           L A A  +AL  G+  H   + SG++   FV N L+ MYA+CG   +A  +F        
Sbjct: 26  LCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFDTMPHRDT 85

Query: 515 --------------DADPV----------DVISWNSLIAGYAINGNATEAIKLFEEMVME 550
                         D D            DV+SWN+LI+GY  +G    ++ L  EM   
Sbjct: 86  VSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRR 145

Query: 551 GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYA------IEPLVEHYACMIDLLSR 604
           GVA D  T   +L +C       GGL       +++A      +E  V   + ++D+  +
Sbjct: 146 GVALDRTTLAVLLKSC-------GGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGK 198

Query: 605 AGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLG 643
              LD+A     GM  + N+  WG  +  C  ++    G
Sbjct: 199 CRSLDDALRFFHGMGER-NSVSWGAAIAGCVQNEQYTRG 236


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 188/494 (38%), Positives = 276/494 (55%), Gaps = 23/494 (4%)

Query: 247 GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWTT--MI 302
           G M  AR+LFD +P  +V +WN M   Y +    +    L++EM ERN  P  +T   + 
Sbjct: 62  GDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLF 121

Query: 303 DGYVRIAKLDEARRL-LDQMPY---KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV 358
            G+ R   L   R L    + Y    N+ A  A+I+ Y     +D A  IFD     DVV
Sbjct: 122 KGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVV 181

Query: 359 CWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRR 418
            WN MI GY +              + KD+++W  ++ G+    Q+D A K F +M   R
Sbjct: 182 TWNAMISGYNR--------------IKKDVISWTAIVTGFVNTGQVDAARKYFHKM-PER 226

Query: 419 NTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIH 478
           + VSW A+I G+L+   + +AL +F  M     K D  T+   L+ACA L AL+LG  I 
Sbjct: 227 DHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIR 286

Query: 479 HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNAT 538
               K+   ND FVGN+LI MY KCG ++ A  +F      D  +W +++ G AING   
Sbjct: 287 TYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGE 346

Query: 539 EAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACM 598
           EA+ +F +M+   V PD VT++GVLSAC+H G+VD G K F  MT  + IEP + HY CM
Sbjct: 347 EALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCM 406

Query: 599 IDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKT 658
           +DLL +AG L EA E++K M +KPN+ +WG LLGACR+H++ ++   A+E++ ELEP   
Sbjct: 407 VDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNG 466

Query: 659 SCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTA 718
           + Y L  N++A   +WD++ ++R  M   G +K PGCS IE+   +H F++GD    +T 
Sbjct: 467 AVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQTK 526

Query: 719 EICNTLKTLAAQIR 732
           EI   L  + + ++
Sbjct: 527 EIYGKLNKMTSDLK 540



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 105/412 (25%), Positives = 193/412 (46%), Gaps = 46/412 (11%)

Query: 45  NTVTYNSMISAYAKN--GRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           N +  N ++S       G +  AR+LF+ +P+ ++ SWN M  GY      K    L+ +
Sbjct: 45  NPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLE 104

Query: 103 MF----RPDLFSWALMITCYTRKGELEKARELF-DLLPNKEDTACW--NAMVAGYAKIGN 155
           M     +PD +++  +   +TR   L+  REL   ++    D+  +  NA++  Y+  G 
Sbjct: 105 MLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGL 164

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
            + A+ + D     ++V+WN+M+SGY +               ++DV+SW  ++ G+V  
Sbjct: 165 IDMARGIFDMSCKSDVVTWNAMISGYNR--------------IKKDVISWTAIVTGFVNT 210

Query: 216 DDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMI 271
             +D+A K+F K+PE++ VSW  M+ GY R     EA  LF +M    +        +++
Sbjct: 211 GQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVL 270

Query: 272 AAYVQRGQIE--EAARLFIEMPERNPVSWTT-----MIDGYVRIAKLDEARRLLDQMPYK 324
            A  Q G +E  E  R +I   ++N V   T     +ID Y +   ++ A  + + +P +
Sbjct: 271 TACAQLGALELGEWIRTYI---DKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQR 327

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKI----GTHDVVCWNVMIKGYAQCGRMDEAINLF 380
           +    TAM+ G   N   +EA  +F ++     T D V +  ++      G +DE    F
Sbjct: 328 DKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFF 387

Query: 381 -----RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
                R  +  +I  +  M+    +   + +A +I + M  + N++ W AL+
Sbjct: 388 ASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALL 439



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 152/346 (43%), Gaps = 37/346 (10%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAK-------------- 58
           S VF  N  I      G ++ A  IF    + + VT+N+MIS Y +              
Sbjct: 147 SNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTG 206

Query: 59  ---NGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSW 111
               G+V+ ARK F +MP+R+ VSW +MI GYL  +  KEA  LF +M     +PD F+ 
Sbjct: 207 FVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTM 266

Query: 112 ALMITCYTRKGELEKA---RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS 168
             ++T   + G LE     R   D    K DT   NA++  Y K GN   A  + + +P 
Sbjct: 267 VSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQ 326

Query: 169 KNIVSWNSMLSGYTKNG----EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKF 224
           ++  +W +M+ G   NG     +++ S+  +A    D V++  +L        +D   KF
Sbjct: 327 RDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKF 386

Query: 225 FQKIP-----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRG 278
           F  +      E N+  +  M+    + G + EA  +   MP++ N + W A++ A     
Sbjct: 387 FASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHK 446

Query: 279 QIEEAARL---FIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
             E A R     +E+   N   +    + Y    K D+ R L   M
Sbjct: 447 DAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVM 492



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 4/161 (2%)

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYA--KCGRIQNAELLFKDADPVDVISWNSLIAGYA 532
           +QIH   IK+G + +  + N +++     + G +  A  LF       V SWN +  GY+
Sbjct: 31  KQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMFKGYS 90

Query: 533 INGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLV 592
                   + L+ EM+   V PD  T+  +    +    +  G +L  C    Y ++  V
Sbjct: 91  RIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGREL-HCHVVKYGLDSNV 149

Query: 593 EHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
             +  +I++ S  G +D A   +  M  K +   W  ++  
Sbjct: 150 FAHNALINMYSLCGLIDMA-RGIFDMSCKSDVVTWNAMISG 189


>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g17630-like [Glycine max]
          Length = 696

 Score =  353 bits (907), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 224/681 (32%), Positives = 360/681 (52%), Gaps = 59/681 (8%)

Query: 66  RKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELE 125
           R LF +     L+S       ++HND++  +   F   F+           C+T    L+
Sbjct: 10  RSLFSRFQPIFLIS-------HVHNDELIYS---FHAFFQ----------RCFT----LQ 45

Query: 126 KARELFD--LLPNKEDTACWNA-MVAGYAKIGNYNEAKKLLDAMPSK---NIVSWNSMLS 179
           +AR+L    +L          A ++A YA+    + A+K+ DA+P +   +++ WNS++ 
Sbjct: 46  QARQLHSQLVLTTAHRLPFLAARLIAVYARFAFLSHARKVFDAIPLESLHHLLLWNSIIR 105

Query: 180 GYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE-LDDLDSAWK------FFQKIPEQN 232
               +G    A + +  M +   +     L   +     L S++          ++  +N
Sbjct: 106 ANVSHGYHQHALELYVEMRKLGFLPDGFTLPLVIRACSSLGSSYLCRIVHCHALQMGFRN 165

Query: 233 VVSWVTMLSG-YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF---- 287
            +  V  L G Y + GRM +AR+LFD M +R++V+WN M++ Y        A+R+F    
Sbjct: 166 HLHVVNELVGMYGKLGRMEDARQLFDGMFVRSIVSWNTMVSGYALNRDSLGASRVFKRME 225

Query: 288 IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA----AQTAMISGYVQNKRMD 343
           +E  + N V+WT+++  + R    DE   L   M  + I     A   ++S       +D
Sbjct: 226 LEGLQPNSVTWTSLLSSHARCGLYDETLELFKVMRTRGIEIGAEALAVVLSVCADMAEVD 285

Query: 344 EANQIFDKI---GTHD-VVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYA 399
              +I   +   G  D +   N +I  Y +   M +A  +F ++ NK++V+WN +I+ YA
Sbjct: 286 WGKEIHGYVVKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYA 345

Query: 400 QIRQMDDAVKIFEEMGK---------RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
           +    D+A   F  M K         R N +SW+A+ISGF        +L++F  M    
Sbjct: 346 ESGLCDEAYAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAYKGRGEKSLELFRQMQLAK 405

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
             A+  T++  LS CA LAAL LGR++H  AI++   +++ VGN LI MY KCG  +   
Sbjct: 406 VMANCVTISSVLSVCAELAALNLGRELHGYAIRNMMSDNILVGNGLINMYMKCGDFKEGH 465

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
           L+F + +  D+ISWNSLI GY ++G    A++ F EM+   + PD +TF+ +LSACSH G
Sbjct: 466 LVFDNIEGRDLISWNSLIGGYGMHGLGENALRTFNEMIRARMKPDNITFVAILSACSHAG 525

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
           LV  G  LF+ M   + IEP VEHYACM+DLL RAG L EA ++V+ M I+PN  +WG L
Sbjct: 526 LVAAGRNLFDQMVTEFRIEPNVEHYACMVDLLGRAGLLKEATDIVRNMPIEPNEYVWGAL 585

Query: 631 LGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQ 690
           L +CRM++++ +      ++  L+ + T  + LLSN++A  GRWD+  +VRVS    G +
Sbjct: 586 LNSCRMYKDMDIVEETASQILTLKSKITGSFMLLSNIYAANGRWDDSARVRVSARTKGLK 645

Query: 691 KQPGCSWIEVKNQIHTFLSGD 711
           K PG SWIEV+ +++TF +G+
Sbjct: 646 KIPGQSWIEVRKKVYTFSAGN 666



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 114/497 (22%), Positives = 209/497 (42%), Gaps = 103/497 (20%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQ---RNLVSWNSMIAGYLHNDKVKEARELFDKM----F 104
           +I+ YA+   ++ ARK+F+ +P     +L+ WNS+I   + +   + A EL+ +M    F
Sbjct: 69  LIAVYARFAFLSHARKVFDAIPLESLHHLLLWNSIIRANVSHGYHQHALELYVEMRKLGF 128

Query: 105 RPDLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNEAKK 161
            PD F+  L+I   +  G     R +      +  +      N +V  Y K+G   +A++
Sbjct: 129 LPDGFTLPLVIRACSSLGSSYLCRIVHCHALQMGFRNHLHVVNELVGMYGKLGRMEDARQ 188

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDD 217
           L D M  ++IVSWN+M+SGY  N +   AS+ F+ ME    + + V+W  +L  +     
Sbjct: 189 LFDGMFVRSIVSWNTMVSGYALNRDSLGASRVFKRMELEGLQPNSVTWTSLLSSHARCGL 248

Query: 218 LDSAWKFFQKIPEQNV-------------------VSWVTMLSGYARNG----------- 247
            D   + F+ +  + +                   V W   + GY   G           
Sbjct: 249 YDETLELFKVMRTRGIEIGAEALAVVLSVCADMAEVDWGKEIHGYVVKGGYEDYLFVKNA 308

Query: 248 ---------RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----- 293
                     M +A ++F ++  +N+V+WNA+I++Y + G  +EA   F+ M +      
Sbjct: 309 LIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAESGLCDEAYAAFLHMEKSDSDDH 368

Query: 294 -----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ--------NK 340
                N +SW+ +I G+    + +++  L  QM    + A    IS  +         N 
Sbjct: 369 SLVRPNVISWSAVISGFAYKGRGEKSLELFRQMQLAKVMANCVTISSVLSVCAELAALNL 428

Query: 341 RMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQ 400
             +        + + +++  N +I  Y +CG   E   +F  +  +D+++WN++I GY  
Sbjct: 429 GRELHGYAIRNMMSDNILVGNGLINMYMKCGDFKEGHLVFDNIEGRDLISWNSLIGGYGM 488

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
               ++A++ F EM + R                                 K D+ T   
Sbjct: 489 HGLGENALRTFNEMIRAR--------------------------------MKPDNITFVA 516

Query: 461 ALSACAHLAALQLGRQI 477
            LSAC+H   +  GR +
Sbjct: 517 ILSACSHAGLVAAGRNL 533



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/416 (24%), Positives = 182/416 (43%), Gaps = 79/416 (18%)

Query: 40  QMSQKNTV-TYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARE 98
           QM  +N +   N ++  Y K GR+ DAR+LF+ M  R++VSWN+M++GY  N     A  
Sbjct: 160 QMGFRNHLHVVNELVGMYGKLGRMEDARQLFDGMFVRSIVSWNTMVSGYALNRDSLGASR 219

Query: 99  LFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKED-----------TAC- 142
           +F +M     +P+  +W  +++ + R G  ++  ELF ++  +             + C 
Sbjct: 220 VFKRMELEGLQPNSVTWTSLLSSHARCGLYDETLELFKVMRTRGIEIGAEALAVVLSVCA 279

Query: 143 ------WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEA 196
                 W   + GY   G Y       D +  K     N+++  Y K+  M  A K F  
Sbjct: 280 DMAEVDWGKEIHGYVVKGGYE------DYLFVK-----NALIGTYGKHQHMGDAHKVFLE 328

Query: 197 MEERDVVSWNLMLDGYVELDDLDSAWKFF----------QKIPEQNVVSWVTMLSGYARN 246
           ++ +++VSWN ++  Y E    D A+  F            +   NV+SW  ++SG+A  
Sbjct: 329 IKNKNLVSWNALISSYAESGLCDEAYAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAYK 388

Query: 247 GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYV 306
           GR  ++  LF QM +  V+A                           N V+ ++++    
Sbjct: 389 GRGEKSLELFRQMQLAKVMA---------------------------NCVTISSVLSVCA 421

Query: 307 RIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNV 362
            +A L+  R L    +  M   NI     +I+ Y++     E + +FD I   D++ WN 
Sbjct: 422 ELAALNLGRELHGYAIRNMMSDNILVGNGLINMYMKCGDFKEGHLVFDNIEGRDLISWNS 481

Query: 363 MIKGYAQCGRMDEAINLFRQMV----NKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           +I GY   G  + A+  F +M+      D +T+  +++  +    +     +F++M
Sbjct: 482 LIGGYGMHGLGENALRTFNEMIRARMKPDNITFVAILSACSHAGLVAAGRNLFDQM 537



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 167/363 (46%), Gaps = 47/363 (12%)

Query: 9   GNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKL 68
           G    Y+F +N  I   GK   + +A K+F ++  KN V++N++IS+YA++G  ++A   
Sbjct: 297 GGYEDYLFVKNALIGTYGKHQHMGDAHKVFLEIKNKNLVSWNALISSYAESGLCDEAYAA 356

Query: 69  FEQMPQR----------NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCY 118
           F  M +           N++SW+++I+G+ +  + +++ ELF +M         +M  C 
Sbjct: 357 FLHMEKSDSDDHSLVRPNVISWSAVISGFAYKGRGEKSLELFRQMQLAK-----VMANCV 411

Query: 119 TRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSML 178
           T    L    EL  L   +E        + GYA           +  M S NI+  N ++
Sbjct: 412 TISSVLSVCAELAALNLGRE--------LHGYA-----------IRNMMSDNILVGNGLI 452

Query: 179 SGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----V 234
           + Y K G+       F+ +E RD++SWN ++ GY      ++A + F ++    +    +
Sbjct: 453 NMYMKCGDFKEGHLVFDNIEGRDLISWNSLIGGYGMHGLGENALRTFNEMIRARMKPDNI 512

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIR-----NVVAWNAMIAAYVQRGQIEEAARLFIE 289
           ++V +LS  +  G +   R LFDQM        NV  +  M+    + G ++EA  +   
Sbjct: 513 TFVAILSACSHAGLVAAGRNLFDQMVTEFRIEPNVEHYACMVDLLGRAGLLKEATDIVRN 572

Query: 290 MP-ERNPVSWTTMIDG---YVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
           MP E N   W  +++    Y  +  ++E    +  +  K   +   + + Y  N R D++
Sbjct: 573 MPIEPNEYVWGALLNSCRMYKDMDIVEETASQILTLKSKITGSFMLLSNIYAANGRWDDS 632

Query: 346 NQI 348
            ++
Sbjct: 633 ARV 635


>gi|310656753|gb|ADP02188.1| PPR domain-containing protein [Triticum aestivum]
          Length = 788

 Score =  353 bits (907), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 211/641 (32%), Positives = 344/641 (53%), Gaps = 30/641 (4%)

Query: 109 FSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS 168
           F++  M++ + + G++  AR LFD +P++     +  MV    K G   EA +L +  PS
Sbjct: 150 FAYDFMVSEHVKAGDIASARRLFDGMPDRT-VVSYTTMVDALMKRGRVAEAVELYEQCPS 208

Query: 169 KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWK- 223
            ++  + + +SG+ +N   H A   F  M    V    ++   M+   V   +   A   
Sbjct: 209 GSVAFFTATISGFVRNELHHNALGVFRKMLSCRVRPNGITIVCMIKACVGAGEFGLALSI 268

Query: 224 --------FFQK-IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
                   FF+  I  QN     ++++ Y R G    AR++FD+M +++VV+W A++  Y
Sbjct: 269 VGLAIKSNFFESSIEVQN-----SLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVY 323

Query: 275 VQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM----PYKNIAAQT 330
            + G ++ A R+   MPERN VSW T+I  + +     EA +L  QM       NI+  +
Sbjct: 324 SESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFS 383

Query: 331 AMISGYVQNKRMDEANQIFD---KIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
           +++S     + +    +I     K+G+  +V     +I  Y +C +  +A  +F  +  K
Sbjct: 384 SVLSACASLEDLRGGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLPQK 443

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446
           +IV WN++++GY+   +M +A+ +F++M   RN  SWN +ISG+ QN   +DALK F  M
Sbjct: 444 NIVCWNSLVSGYSYNGKMVEAMYLFKKM-PARNLASWNTIISGYAQNRQFVDALKSFNAM 502

Query: 447 TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI 506
              G+     T +  L ACA+L +L  G+  H   IK G    +F+G +L  MYAK G +
Sbjct: 503 LASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGIEESIFIGTALSDMYAKSGDL 562

Query: 507 QNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
           Q+++ +F      + ++W ++I G A NG A E+I LFE+M+  G+ P+  TF+ +L AC
Sbjct: 563 QSSKRMFYQMPERNDVTWTAMIQGLAENGFAEESILLFEDMMATGMTPNEHTFLALLFAC 622

Query: 567 SHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGI 626
           SH GLV+  +  F+ M +   I P  +HY CM+D+L+RAGRL EA  ++     K  A  
Sbjct: 623 SHGGLVEQAIHYFDKM-QALGISPKEKHYTCMVDVLARAGRLAEAEALLMKTPSKSEANS 681

Query: 627 WGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEG 686
           W  LL AC  ++N ++   A ++L EL    T+ Y LLSNM+A  GRW +  ++RV M+G
Sbjct: 682 WAALLSACNTYRNEEIAERAAKRLHELAKDNTAGYVLLSNMYASCGRWKDAARIRVLMKG 741

Query: 687 SGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
           +  +K  GCSW++V+ Q H F S + K   + EI   L  L
Sbjct: 742 TTLKKDGGCSWVQVRGQYHAFFSWEAKHPLSMEIDEILDLL 782



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 149/594 (25%), Positives = 269/594 (45%), Gaps = 111/594 (18%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F  +  +++  K+G +  A ++F  M  +  V+Y +M+ A  K GRV +A +L+EQ P  
Sbjct: 150 FAYDFMVSEHVKAGDIASARRLFDGMPDRTVVSYTTMVDALMKRGRVAEAVELYEQCPSG 209

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMF----RPD---------------LFSWAL--- 113
           ++  + + I+G++ N+    A  +F KM     RP+                F  AL   
Sbjct: 210 SVAFFTATISGFVRNELHHNALGVFRKMLSCRVRPNGITIVCMIKACVGAGEFGLALSIV 269

Query: 114 ------------------MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGN 155
                             +IT Y R G+   AR++FD +  K D   W A++  Y++ G+
Sbjct: 270 GLAIKSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVK-DVVSWTALLDVYSESGD 328

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDG 211
            + A+++LDAMP +N VSW ++++ + + G    A K +  M       ++  ++ +L  
Sbjct: 329 LDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSA 388

Query: 212 YVELDDLDSAWKFFQKI----PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
              L+DL    +   +        NV    +++  Y +  +  +A+ +FD +P +N+V W
Sbjct: 389 CASLEDLRGGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLPQKNIVCW 448

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLD------QM 321
           N++++ Y   G++ EA  LF +MP RN  SW T+I GY +  +  +A +  +      Q+
Sbjct: 449 NSLVSGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNAMLASGQV 508

Query: 322 P----YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG-YAQCGRMDEA 376
           P    + ++    A +   V  K M  A  I  K+G  + +     +   YA+ G +  +
Sbjct: 509 PGEITFSSVLLACANLCSLVTGK-MAHAKTI--KLGIEESIFIGTALSDMYAKSGDLQSS 565

Query: 377 INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALI-----S 428
             +F QM  ++ VTW  MI G A+    ++++ +FE+M   G   N  ++ AL+      
Sbjct: 566 KRMFYQMPERNDVTWTAMIQGLAENGFAEESILLFEDMMATGMTPNEHTFLALLFACSHG 625

Query: 429 GFLQNEFH----LDALKIF-----------------------VLMTQEGKKADHSTLACA 461
           G ++   H    + AL I                         L+ +   K++ ++ A  
Sbjct: 626 GLVEQAIHYFDKMQALGISPKEKHYTCMVDVLARAGRLAEAEALLMKTPSKSEANSWAAL 685

Query: 462 LSACAHL----AALQLGRQIHHLAI--KSGYVNDLFVGNSLITMYAKCGRIQNA 509
           LSAC        A +  +++H LA    +GYV        L  MYA CGR ++A
Sbjct: 686 LSACNTYRNEEIAERAAKRLHELAKDNTAGYV-------LLSNMYASCGRWKDA 732



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 117/454 (25%), Positives = 198/454 (43%), Gaps = 95/454 (20%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           QN  IT   + G    A K+F +M  K+ V++ +++  Y+++G ++ AR++ + MP+RN 
Sbjct: 285 QNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNE 344

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMF----RPDL--FSWAL------------------ 113
           VSW ++IA +       EA +L+ +M     RP++  FS  L                  
Sbjct: 345 VSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACASLEDLRGGARIHAR 404

Query: 114 ----------MITC-----YTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNE 158
                      ++C     Y +  +   A+ +FD LP K +  CWN++V+GY+  G   E
Sbjct: 405 SLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLPQK-NIVCWNSLVSGYSYNGKMVE 463

Query: 159 AKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME-------------------- 198
           A  L   MP++N+ SWN+++SGY +N +   A K F AM                     
Sbjct: 464 AMYLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNAMLASGQVPGEITFSSVLLACAN 523

Query: 199 -------------------ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTM 239
                              E  +     + D Y +  DL S+ + F ++PE+N V+W  M
Sbjct: 524 LCSLVTGKMAHAKTIKLGIEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAM 583

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVV----AWNAMIAAYVQRGQIEEAARLFIEM----- 290
           + G A NG   E+  LF+ M    +      + A++ A    G +E+A   F +M     
Sbjct: 584 IQGLAENGFAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFDKMQALGI 643

Query: 291 -PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDE----A 345
            P+     +T M+D   R  +L EA  LL + P K+ A   A +       R +E    A
Sbjct: 644 SPKEK--HYTCMVDVLARAGRLAEAEALLMKTPSKSEANSWAALLSACNTYRNEEIAERA 701

Query: 346 NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
            +   ++   +   + ++   YA CGR  +A  +
Sbjct: 702 AKRLHELAKDNTAGYVLLSNMYASCGRWKDAARI 735



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 150/324 (46%), Gaps = 23/324 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF     I    K  +  +A  IF  + QKN V +NS++S Y+ NG++ +A  LF++MP 
Sbjct: 414 VFVSCSLIDMYCKCNKCGDAQTIFDTLPQKNIVCWNSLVSGYSYNGKMVEAMYLFKKMPA 473

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPD------LFSWALMIT---CYTRKGELE 125
           RNL SWN++I+GY  N +  +A + F+ M           FS  L+     C    G++ 
Sbjct: 474 RNLASWNTIISGYAQNRQFVDALKSFNAMLASGQVPGEITFSSVLLACANLCSLVTGKMA 533

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
            A+ +   L  +E      A+   YAK G+   +K++   MP +N V+W +M+ G  +NG
Sbjct: 534 HAKTI--KLGIEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQGLAENG 591

Query: 186 EMHLASKFFEAMEERDVV----SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS----WV 237
               +   FE M    +     ++  +L        ++ A  +F K+    +      + 
Sbjct: 592 FAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFDKMQALGISPKEKHYT 651

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVV-AWNAMIAA---YVQRGQIEEAARLFIEMPER 293
            M+   AR GR+ EA  L  + P ++   +W A+++A   Y      E AA+   E+ + 
Sbjct: 652 CMVDVLARAGRLAEAEALLMKTPSKSEANSWAALLSACNTYRNEEIAERAAKRLHELAKD 711

Query: 294 NPVSWTTMIDGYVRIAKLDEARRL 317
           N   +  + + Y    +  +A R+
Sbjct: 712 NTAGYVLLSNMYASCGRWKDAARI 735


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  353 bits (907), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 210/682 (30%), Positives = 346/682 (50%), Gaps = 90/682 (13%)

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           DT   N  V    + G  + A K+ D MP KN VS N+M+SGY K G++  A   F+AM 
Sbjct: 43  DTCRSNFTVEDLLRRGQVSAALKVYDEMPHKNTVSTNTMISGYVKMGDLSSARHLFDAMP 102

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQK------IPE----------------QNVVSW 236
           +R VV+W +++  Y   +  D A+K F++      +P+                QN V  
Sbjct: 103 DRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTLLPGCNDAVPQNAVGQ 162

Query: 237 V-------------------TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR 277
           V                    +L  Y    R+  A  LF+++  ++ V +N +I  Y + 
Sbjct: 163 VHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDKDSVTFNTLITGYEKD 222

Query: 278 GQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQ 329
           G   EA  LF++M +     +  +++ ++   V +      ++L    +     ++ +  
Sbjct: 223 GLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVG 282

Query: 330 TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM------ 383
             ++  Y ++ R+ E   +F+++   D V +NV+I  Y+Q  + +E++NLFR+M      
Sbjct: 283 NQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFD 342

Query: 384 ---------------------------------VNKDIVTWNTMIAGYAQIRQMDDAVKI 410
                                             +  +   N+++  YA+    D+A  I
Sbjct: 343 RRNFPFATMLSIAANLSSLQVGRQVHCQAIVATADSILHVGNSLVDMYAKCEMFDEAELI 402

Query: 411 FEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAA 470
           F+ + +R +TVSW ALISG++Q   H   LK+F  M     +AD ST A  L A A  A+
Sbjct: 403 FKSLSQR-STVSWTALISGYVQKGLHGAGLKLFTKMRGANLRADQSTFATVLKASAGFAS 461

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
           L LG+Q+H   I+SG + ++F G+ L+ MYAKCG I++A  +F++    + +SWN+LI+ 
Sbjct: 462 LLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISA 521

Query: 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP 590
           YA NG+   AI  F +M+  G+ PD V+ +GVL ACSH G V+ G + F+ M+ +Y I P
Sbjct: 522 YADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIACSHCGFVEQGTEFFQAMSPIYGITP 581

Query: 591 LVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL 650
             +HYACM+DLL R GR  EA +++  M  +P+  +W ++L ACR+++N  L   A E+L
Sbjct: 582 KKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIYKNQSLAERAAEQL 641

Query: 651 SELEP-QKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLS 709
             +E  +  + Y  +SN++A AG+W+ V  V+ +M   G +K P  SW+EV ++IH F S
Sbjct: 642 FSMEKLRDAAAYVSMSNIYAAAGKWENVRHVKKAMRERGIKKVPAYSWVEVNHKIHVFSS 701

Query: 710 GDPKQCRTAEICNTLKTLAAQI 731
            D       EI   +  L  +I
Sbjct: 702 NDQTHPNGDEIVKKINELTTEI 723



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 94/201 (46%), Gaps = 13/201 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF+ +  +    K G +++A+++F +M  +N V++N++ISAYA NG    A   F +M Q
Sbjct: 481 VFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQ 540

Query: 75  RNLVSWNSMIAGYL----HNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELE 125
             L   +  I G L    H   V++  E F  M       P    +A M+    R G   
Sbjct: 541 SGLQPDSVSILGVLIACSHCGFVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFA 600

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS----KNIVSWNSMLSGY 181
           +A +L D +P + D   W++++       N + A++  + + S    ++  ++ SM + Y
Sbjct: 601 EAEKLMDEMPFEPDEIMWSSVLNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIY 660

Query: 182 TKNGEMHLASKFFEAMEERDV 202
              G+        +AM ER +
Sbjct: 661 AAAGKWENVRHVKKAMRERGI 681


>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 580

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 189/513 (36%), Positives = 300/513 (58%), Gaps = 21/513 (4%)

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW 298
           ++  Y++   +  A ++F  +P++N  +WN +I+AY + G   EA  L  +MP+ N VS+
Sbjct: 55  LIDFYSKCDSIQSAHKVFHVLPVKNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLVSY 114

Query: 299 TTMIDGY----VRIAKLDEARRLL--------DQMPYKNIAAQTAMISGYVQNKRMDEAN 346
            ++I G      R   L+  + +L        D+    ++    A +      +++  A 
Sbjct: 115 NSLISGLGHHGFRKESLNVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAA 174

Query: 347 QIFDKIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMD 405
            I   IG + +++  N +I  Y +CG  D + ++F +M  +D+V+W +M+A YAQ  +++
Sbjct: 175 II---IGLNSNIIIGNALIDAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLE 231

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
           DA  +F +M + +NTVSW ALI+GF QN    +AL +F  M +EG      T A  LSAC
Sbjct: 232 DAHWLFSQM-QEKNTVSWTALIAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVLSAC 290

Query: 466 AHLAALQLGRQIHHLAIKS---GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
           A LA +  G++IH   I+S    Y  ++F+ N+LI MY KCG++++A  LFK     D++
Sbjct: 291 ADLALIARGKEIHGHIIRSTCIDYFCNIFILNALIDMYCKCGQMRSATTLFKGMHEKDIV 350

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           SWNSLI G+A NG+  E++ +FE M+   + P+ VTF+G+LSAC H GLV  GL++ + M
Sbjct: 351 SWNSLITGFAQNGHGEESLAVFERMIEADIRPNHVTFLGLLSACCHTGLVSEGLRILDSM 410

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVK-GMKIKPNAGIWGTLLGACRMHQNIK 641
            + Y + P  +HYA MIDLL R  RL+EA  ++K   K   + G+WG LLGACR+H N+ 
Sbjct: 411 EKDYGVCPRSDHYAIMIDLLGRNNRLEEAMGLIKRAPKGSDHVGMWGALLGACRIHGNMD 470

Query: 642 LGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVK 701
           L R A E L +LEP   + Y ++ N++A A RWDE  +VR  M   G +K+  CSWIEV+
Sbjct: 471 LARRAAEVLFQLEPGNAARYVMVYNIYAAASRWDEARQVRRLMMERGLRKEAACSWIEVR 530

Query: 702 NQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNT 734
           N  H F++ +   C+  E+   +  L  Q+ ++
Sbjct: 531 NTRHQFVAKERSHCQINEVYEVIHNLVDQMYDS 563



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 192/398 (48%), Gaps = 31/398 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            F  N+ I    K   ++ A K+F  +  KNT ++N +ISAY+++G  N+A  L +QMP+
Sbjct: 49  TFLANRLIDFYSKCDSIQSAHKVFHVLPVKNTHSWNIIISAYSRSGLFNEAHNLLDQMPK 108

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRP------DLFSWALMITCYTRKGELEKAR 128
            NLVS+NS+I+G  H+   KE+  +F  M +       D F+   ++      G  E  R
Sbjct: 109 PNLVSYNSLISGLGHHGFRKESLNVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLR 168

Query: 129 ELFD---LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
           ++     ++    +    NA++  Y K G  + +  +   MP +++VSW SM++ Y +  
Sbjct: 169 QVHGAAIIIGLNSNIIIGNALIDAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQAS 228

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLS 241
            +  A   F  M+E++ VSW  ++ G+ +    D A   F+++ E+ +     ++ ++LS
Sbjct: 229 RLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVLS 288

Query: 242 GYARNGRMLEARRLFDQMPIR--------NVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
             A    +   + +   + IR        N+   NA+I  Y + GQ+  A  LF  M E+
Sbjct: 289 ACADLALIARGKEIHGHI-IRSTCIDYFCNIFILNALIDMYCKCGQMRSATTLFKGMHEK 347

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIF 349
           + VSW ++I G+ +    +E+  + ++M   +I         ++S       + E  +I 
Sbjct: 348 DIVSWNSLITGFAQNGHGEESLAVFERMIEADIRPNHVTFLGLLSACCHTGLVSEGLRIL 407

Query: 350 DKIGTHDVVC-----WNVMIKGYAQCGRMDEAINLFRQ 382
           D +     VC     + +MI    +  R++EA+ L ++
Sbjct: 408 DSMEKDYGVCPRSDHYAIMIDLLGRNNRLEEAMGLIKR 445



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 165/349 (47%), Gaps = 28/349 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I   GK G  + +  IFS+M +++ V++ SM++AYA+  R+ DA  LF QM ++N V
Sbjct: 187 NALIDAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTV 246

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLL 134
           SW ++IAG+  N +  EA  LF++M      P  F++A +++       + + +E+   +
Sbjct: 247 SWTALIAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVLSACADLALIARGKEIHGHI 306

Query: 135 PNKE--DTAC----WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
                 D  C     NA++  Y K G    A  L   M  K+IVSWNS+++G+ +NG   
Sbjct: 307 IRSTCIDYFCNIFILNALIDMYCKCGQMRSATTLFKGMHEKDIVSWNSLITGFAQNGHGE 366

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVE-----------LDDLDSAWKFFQKIPEQNVVSWV 237
            +   FE M E D+   ++   G +            L  LDS  K +   P  +   + 
Sbjct: 367 ESLAVFERMIEADIRPNHVTFLGLLSACCHTGLVSEGLRILDSMEKDYGVCPRSD--HYA 424

Query: 238 TMLSGYARNGRMLEARRLFDQMP--IRNVVAWNAMIAAYVQRGQIE---EAARLFIEMPE 292
            M+    RN R+ EA  L  + P    +V  W A++ A    G ++    AA +  ++  
Sbjct: 425 IMIDLLGRNNRLEEAMGLIKRAPKGSDHVGMWGALLGACRIHGNMDLARRAAEVLFQLEP 484

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKR 341
            N   +  + + Y   ++ DEAR++   M  + +  + A     V+N R
Sbjct: 485 GNAARYVMVYNIYAAASRWDEARQVRRLMMERGLRKEAACSWIEVRNTR 533



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 4/128 (3%)

Query: 455 HSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
           H   +  +S C     L+LG+ +H   IK+  +   F+ N LI  Y+KC  IQ+A  +F 
Sbjct: 14  HQHYSSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQSAHKVFH 73

Query: 515 DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574
                +  SWN +I+ Y+ +G   EA  L ++M      P+ V++  ++S   H G    
Sbjct: 74  VLPVKNTHSWNIIISAYSRSGLFNEAHNLLDQM----PKPNLVSYNSLISGLGHHGFRKE 129

Query: 575 GLKLFECM 582
            L +F+ M
Sbjct: 130 SLNVFKTM 137


>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
 gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
          Length = 638

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 196/544 (36%), Positives = 313/544 (57%), Gaps = 13/544 (2%)

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV----SWVTMLSGYARNGRMLEARR 254
           + D   WN ++  Y   ++   A   F  + E        S+  +L   AR   + E ++
Sbjct: 87  DDDPFLWNAVIKSYSHGNEPVRALVLFCMMLENGFCVDKFSFSLILKACARVCLVEEGKQ 146

Query: 255 ---LFDQMPI-RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAK 310
              L  ++ I  N+   N +IA Y++ G IE A ++F  MP ++ VS+ +MIDGYV+   
Sbjct: 147 IHGLLMKLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMIDGYVKSGT 206

Query: 311 LDEARRLLDQMPY--KNIAAQTAMISGYVQNKR-MDEANQIFDKIGTHDVVCWNVMIKGY 367
           +D AR L D MP   KN+ +  +M+ G+ Q K  +  A ++F+K+   D+V WN +I G+
Sbjct: 207 IDLARELFDSMPLEDKNLISWNSMLGGFAQTKDGIGLALELFEKMPERDLVSWNTIIGGF 266

Query: 368 AQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
           A+CGR++ A +LF +M  +D+++W+ MI GYA++  +  A  +F+EM   ++ V++N ++
Sbjct: 267 AKCGRIEFAHSLFNRMPKRDVISWSNMIDGYAKLGDIKVARTLFDEM-PDKDVVAFNTIM 325

Query: 428 SGFLQNEFHLDALKIFVLMT-QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
           +G+ QN ++ +AL+IF  M  Q     D +TL  ALSA + L  ++    +H+  +++G 
Sbjct: 326 AGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVEKAASMHNYFLENGI 385

Query: 487 VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEE 546
                V  +LI MY+KCG I+NA L+F   D   +  WN++I+G A NG    A  +  E
Sbjct: 386 SVTGKVAVALIDMYSKCGSIENAILIFDGVDQKGIDHWNAMISGMARNGLGKLAFGMLLE 445

Query: 547 MVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAG 606
           M    V PD +TFIGVL+AC+H GLV  GL  FE M +V+ +EP ++HY CM+D+L +AG
Sbjct: 446 MHRLSVKPDGITFIGVLNACAHAGLVKEGLICFELMRKVHKLEPKLQHYGCMVDILGKAG 505

Query: 607 RLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSN 666
            ++ A + ++ M I+PN  IW TLL AC+ H+N  +G +  + L  ++   +S Y LLSN
Sbjct: 506 LVEGALKFIEEMPIEPNDIIWRTLLSACQNHENFTIGELIAKHLMTMDSCNSSSYVLLSN 565

Query: 667 MHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKT 726
           ++A  G W    KVR+ M+     K PGCSWIE++  +H FL  D      +EI + L  
Sbjct: 566 IYARLGLWSAASKVRMMMKKQNLTKVPGCSWIELEGVVHEFLVRDKSHPYVSEIYSVLDG 625

Query: 727 LAAQ 730
             A 
Sbjct: 626 FGAS 629



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 139/513 (27%), Positives = 247/513 (48%), Gaps = 88/513 (17%)

Query: 49  YNSMISAYAKNGRVNDARKLFEQMPQRNLV----SWNSMIAGYLHNDKVKEARELFDKMF 104
           +N++I +Y+       A  LF  M +        S++ ++        V+E +++   + 
Sbjct: 93  WNAVIKSYSHGNEPVRALVLFCMMLENGFCVDKFSFSLILKACARVCLVEEGKQIHGLLM 152

Query: 105 RPDLFSWALMITC----YTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
           + ++ S   ++ C    Y R G++E AR++FD +P  +D+  +N+M+ GY K G  + A+
Sbjct: 153 KLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMP-IQDSVSYNSMIDGYVKSGTIDLAR 211

Query: 161 KLLDAMP--SKNIVSWNSMLSGY--TKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELD 216
           +L D+MP   KN++SWNSML G+  TK+G + LA + FE M ERD+VSWN ++ G+ +  
Sbjct: 212 ELFDSMPLEDKNLISWNSMLGGFAQTKDG-IGLALELFEKMPERDLVSWNTIIGGFAKCG 270

Query: 217 DLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ 276
            ++ A   F ++P+++V+SW  M+ GYA+ G +  AR LFD+MP ++VVA+N ++A Y Q
Sbjct: 271 RIEFAHSLFNRMPKRDVISWSNMIDGYAKLGDIKVARTLFDEMPDKDVVAFNTIMAGYAQ 330

Query: 277 RGQIEEAARLFIEMPERNPVS--WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMIS 334
            G   EA  +F EM  ++ +S   TT++     I++L    +                 +
Sbjct: 331 NGYYTEALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVEK-----------------A 373

Query: 335 GYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTM 394
             + N  ++    +  K+          +I  Y++CG ++ AI +F  +  K I  WN M
Sbjct: 374 ASMHNYFLENGISVTGKVAV-------ALIDMYSKCGSIENAILIFDGVDQKGIDHWNAM 426

Query: 395 IAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
           I+G A+             +GK                      A  + + M +   K D
Sbjct: 427 ISGMAR-----------NGLGKL---------------------AFGMLLEMHRLSVKPD 454

Query: 455 HSTLACALSACAH-------LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
             T    L+ACAH       L   +L R++H L  K  +         ++ +  K G ++
Sbjct: 455 GITFIGVLNACAHAGLVKEGLICFELMRKVHKLEPKLQHY------GCMVDILGKAGLVE 508

Query: 508 NAELLFKD--ADPVDVISWNSLIAGYAINGNAT 538
            A    ++   +P D+I W +L++    + N T
Sbjct: 509 GALKFIEEMPIEPNDII-WRTLLSACQNHENFT 540



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 95/291 (32%), Positives = 159/291 (54%), Gaps = 13/291 (4%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS +F  N  I    + G +E A ++F +M  +++V+YNSMI  Y K+G ++ AR+LF+ 
Sbjct: 157 GSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMIDGYVKSGTIDLARELFDS 216

Query: 72  MP--QRNLVSWNSMIAGYLHN-DKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAR 128
           MP   +NL+SWNSM+ G+    D +  A ELF+KM   DL SW  +I  + + G +E A 
Sbjct: 217 MPLEDKNLISWNSMLGGFAQTKDGIGLALELFEKMPERDLVSWNTIIGGFAKCGRIEFAH 276

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
            LF+ +P K D   W+ M+ GYAK+G+   A+ L D MP K++V++N++++GY +NG   
Sbjct: 277 SLFNRMP-KRDVISWSNMIDGYAKLGDIKVARTLFDEMPDKDVVAFNTIMAGYAQNGYYT 335

Query: 189 LASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSW----VTM 239
            A + F  M+ +     D  +  + L    +L  ++ A        E  +       V +
Sbjct: 336 EALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVEKAASMHNYFLENGISVTGKVAVAL 395

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
           +  Y++ G +  A  +FD +  + +  WNAMI+   + G  + A  + +EM
Sbjct: 396 IDMYSKCGSIENAILIFDGVDQKGIDHWNAMISGMARNGLGKLAFGMLLEM 446



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 122/449 (27%), Positives = 212/449 (47%), Gaps = 66/449 (14%)

Query: 31  VEEAIKIFSQMSQ----KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           VEE  +I   + +     N    N +I+ Y + G +  AR++F++MP ++ VS+NSMI G
Sbjct: 141 VEEGKQIHGLLMKLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMIDG 200

Query: 87  YLHNDKVKEARELFDKMFRPD--LFSWALMITCYTR-KGELEKARELFDLLPNKEDTACW 143
           Y+ +  +  ARELFD M   D  L SW  M+  + + K  +  A ELF+ +P + D   W
Sbjct: 201 YVKSGTIDLARELFDSMPLEDKNLISWNSMLGGFAQTKDGIGLALELFEKMPER-DLVSW 259

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N ++ G+AK G    A  L + MP ++++SW++M+ GY K G++ +A   F+ M ++DVV
Sbjct: 260 NTIIGGFAKCGRIEFAHSLFNRMPKRDVISWSNMIDGYAKLGDIKVARTLFDEMPDKDVV 319

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRN 263
           ++N                               T+++GYA+NG   EA  +F +M  ++
Sbjct: 320 AFN-------------------------------TIMAGYAQNGYYTEALEIFHEMQRQS 348

Query: 264 VVAWN-----AMIAAYVQRGQIEEAARL---FIEMPERNPVSWT-----TMIDGYVRIAK 310
            ++ +       ++A  Q G +E+AA +   F+E    N +S T      +ID Y +   
Sbjct: 349 NLSPDETTLVVALSAISQLGHVEKAASMHNYFLE----NGISVTGKVAVALIDMYSKCGS 404

Query: 311 LDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG----THDVVCWNVMIKG 366
           ++ A  + D +  K I    AMISG  +N     A  +  ++       D + +  ++  
Sbjct: 405 IENAILIFDGVDQKGIDHWNAMISGMARNGLGKLAFGMLLEMHRLSVKPDGITFIGVLNA 464

Query: 367 YAQCGRMDEAINLFRQM-----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
            A  G + E +  F  M     +   +  +  M+    +   ++ A+K  EEM    N +
Sbjct: 465 CAHAGLVKEGLICFELMRKVHKLEPKLQHYGCMVDILGKAGLVEGALKFIEEMPIEPNDI 524

Query: 422 SWNALISGFLQNE-FHLDALKIFVLMTQE 449
            W  L+S    +E F +  L    LMT +
Sbjct: 525 IWRTLLSACQNHENFTIGELIAKHLMTMD 553



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 155/335 (46%), Gaps = 31/335 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I    K GR+E A  +F++M +++ +++++MI  YAK G +  AR LF++MP +++V
Sbjct: 260 NTIIGGFAKCGRIEFAHSLFNRMPKRDVISWSNMIDGYAKLGDIKVARTLFDEMPDKDVV 319

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARELFDL 133
           ++N+++AGY  N    EA E+F +M R     PD  +  + ++  ++ G +EKA  + + 
Sbjct: 320 AFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVEKAASMHNY 379

Query: 134 LPNKEDTACWN---AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
                 +       A++  Y+K G+   A  + D +  K I  WN+M+SG  +NG   LA
Sbjct: 380 FLENGISVTGKVAVALIDMYSKCGSIENAILIFDGVDQKGIDHWNAMISGMARNGLGKLA 439

Query: 191 SKFFEAMEERDVVSWNLMLDGYVELDDLDS------------AWKFFQKIP--EQNVVSW 236
                 M    V       DG   +  L++             ++  +K+   E  +  +
Sbjct: 440 FGMLLEMHRLSVKP-----DGITFIGVLNACAHAGLVKEGLICFELMRKVHKLEPKLQHY 494

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPE 292
             M+    + G +  A +  ++MPI  N + W  +++A          E  A+  + M  
Sbjct: 495 GCMVDILGKAGLVEGALKFIEEMPIEPNDIIWRTLLSACQNHENFTIGELIAKHLMTMDS 554

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
            N  S+  + + Y R+     A ++   M  +N+ 
Sbjct: 555 CNSSSYVLLSNIYARLGLWSAASKVRMMMKKQNLT 589


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 191/553 (34%), Positives = 313/553 (56%), Gaps = 21/553 (3%)

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
           D  +   ++  Y+    +  A++ F ++  ++V +W  MLSG  RN R  EA  LF +M 
Sbjct: 103 DAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMV 162

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMP--------ERNPVSWTTMIDGYVRIAKLD 312
           +  V      +++ +    +     L + M         +        MID Y ++  L+
Sbjct: 163 MEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLE 222

Query: 313 EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF----DKIGTHDVVCWNVMIKGYA 368
           E R++ D M  +++    ++ISG+ Q  ++  A ++F    D   + DV+    +    A
Sbjct: 223 EVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIA 282

Query: 369 QCGRMDEAINLFRQMVNK-----DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
           QCG +    ++   MV +     DI+  N ++  YA++ +++ A ++F+ M   R+ VSW
Sbjct: 283 QCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSM-PVRDAVSW 341

Query: 424 NALISGFLQNEFHLDALKIFVLMTQ-EGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482
           N LI+G++QN    +A+ ++  M + EG K    T    L A +HL ALQ G ++H L+I
Sbjct: 342 NTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSI 401

Query: 483 KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIK 542
           K+G   D++VG  +I +YAKCG++  A LLF+         WN++I+G  ++G+  +A+ 
Sbjct: 402 KTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALS 461

Query: 543 LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLL 602
           LF +M  EG++PD VTF+ +L+ACSH GLVD G   F  M   Y I+P+ +HYACM+D+ 
Sbjct: 462 LFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMF 521

Query: 603 SRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYA 662
            RAG+LD+AF+ ++ M IKP++ IWG LLGACR+H N+++G++A + L EL+P+    Y 
Sbjct: 522 GRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYV 581

Query: 663 LLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTA--EI 720
           L+SNM+A+ G+WD V++VR  +     QK PG S IEVK  ++ F SG+         EI
Sbjct: 582 LMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQMNIHPQHEEI 641

Query: 721 CNTLKTLAAQIRN 733
              L  L A+IR+
Sbjct: 642 QRELLDLLAKIRS 654



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 118/480 (24%), Positives = 214/480 (44%), Gaps = 85/480 (17%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL- 108
            +++ AY + GRV DA + F++M  R++ +WN+M++G   N +  EA  LF +M    + 
Sbjct: 108 GALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVA 167

Query: 109 -----FSWALMITCYTRKGELEKARELFDLLPNKEDT--ACWNAMVAGYAKIGNYNEAKK 161
                 S  L +        L  A  L+ +    +D    C NAM+  Y K+G   E +K
Sbjct: 168 GDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVC-NAMIDVYGKLGMLEEVRK 226

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER--------------------- 200
           + D M S+++V+WNS++SG+ + G++  A + F  M +                      
Sbjct: 227 VFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGD 286

Query: 201 -------------------DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
                              D+++ N ++D Y +L  +++A + F  +P ++ VSW T+++
Sbjct: 287 ICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLIT 346

Query: 242 GYARNGRMLEARRLFDQM-------PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER- 293
           GY +NG   EA  ++D M       PI+    + +++ AY   G +++  R+     +  
Sbjct: 347 GYMQNGLASEAIHVYDHMQKHEGLKPIQGT--FVSVLPAYSHLGALQQGTRMHALSIKTG 404

Query: 294 ---NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD 350
              +    T +ID Y +  KLDEA  L +Q P ++     A+ISG   +    +A  +F 
Sbjct: 405 LNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFS 464

Query: 351 KIG----THDVVCWNVMIKGYAQCGRMDEAINLFRQMVN----KDIVT-WNTMIAGYAQI 401
           ++     + D V +  ++   +  G +D+  N F  M      K I   +  M+  + + 
Sbjct: 465 QMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRA 524

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALISGFL------------QNEFHLDALKI--FVLMT 447
            Q+DDA      M  + ++  W AL+                QN F LD   +  +VLM+
Sbjct: 525 GQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMS 584



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 109/461 (23%), Positives = 208/461 (45%), Gaps = 64/461 (13%)

Query: 137 KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEA 196
           + D     A+V  Y + G   +A +  D M  +++ +WN+MLSG  +N     A   F  
Sbjct: 101 RGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGR 160

Query: 197 MEER----DVVSWNLMLDGYVELDD--LDSAWKFF--QKIPEQNVVSWVTMLSGYARNGR 248
           M       D V+ + +L   V L D  L  A   +  +   +  +     M+  Y + G 
Sbjct: 161 MVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGM 220

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER--------------- 293
           + E R++FD M  R++V WN++I+ + Q GQ+  A  +F  M +                
Sbjct: 221 LEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASA 280

Query: 294 -------------------------NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA 328
                                    + ++   ++D Y +++K++ A+R+ D MP ++  +
Sbjct: 281 IAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVS 340

Query: 329 QTAMISGYVQNKRMDEANQIFDKIGTHDVV-----CWNVMIKGYAQCGRMDEAINL---- 379
              +I+GY+QN    EA  ++D +  H+ +      +  ++  Y+  G + +   +    
Sbjct: 341 WNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALS 400

Query: 380 FRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDA 439
            +  +N D+     +I  YA+  ++D+A+ +FE+   RR+T  WNA+ISG   +     A
Sbjct: 401 IKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQT-PRRSTGPWNAVISGVGVHGHGAKA 459

Query: 440 LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN--SLI 497
           L +F  M QEG   DH T    L+AC+H   +  GR   ++ +++ Y       +   ++
Sbjct: 460 LSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNM-MQTAYGIKPIAKHYACMV 518

Query: 498 TMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGN 536
            M+ + G++ +A    ++  P+  D   W +L+    I+GN
Sbjct: 519 DMFGRAGQLDDAFDFIRNM-PIKPDSAIWGALLGACRIHGN 558



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 183/411 (44%), Gaps = 68/411 (16%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF----DKMFR 105
           N+MI  Y K G + + RK+F+ M  R+LV+WNS+I+G+    +V  A E+F    D    
Sbjct: 209 NAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVS 268

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNK----EDTACWNAMVAGYAKIGNYNEAKK 161
           PD+ +   + +   + G++   R +   +  +     D    NA+V  YAK+     A++
Sbjct: 269 PDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQR 328

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER--------------------- 200
           + D+MP ++ VSWN++++GY +NG    A   ++ M++                      
Sbjct: 329 MFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLG 388

Query: 201 -------------------DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
                              DV     ++D Y +   LD A   F++ P ++   W  ++S
Sbjct: 389 ALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVIS 448

Query: 242 GYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPER---N 294
           G   +G   +A  LF QM    +    V + +++AA    G +++    F  M       
Sbjct: 449 GVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIK 508

Query: 295 PVS--WTTMIDGYVRIAKLDEARRLLDQMPYKNIAA------QTAMISGYVQNKRMDEAN 346
           P++  +  M+D + R  +LD+A   +  MP K  +A          I G V+  ++  A+
Sbjct: 509 PIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKV--AS 566

Query: 347 QIFDKIGTHDVVCWNVMIKGYAQCGR---MDEAINLFRQMVNKDIVTWNTM 394
           Q   ++   +V  + +M   YA+ G+   +DE  +L R+   +    W+++
Sbjct: 567 QNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSI 617


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 229/751 (30%), Positives = 390/751 (51%), Gaps = 93/751 (12%)

Query: 59  NGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCY 118
           + R+ +A  LF++ P R+  S+ S++ G+  + + +EA+ LF  + R       + + C 
Sbjct: 40  SSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHR-----LGMEMDCS 94

Query: 119 TRKGELEKARELFDLLPNKE------------DTACWNAMVAGYAKIGNYNEAKKLLDAM 166
                L+ +  L D L  ++            D +   ++V  Y K  N+ + +K+ D M
Sbjct: 95  IFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEM 154

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAME-------------------ERDVVSWNL 207
             +N+V+W +++SGY +N         F  M+                   E  V    L
Sbjct: 155 KERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGL 214

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
            +   V  + LD      + IP  N     ++++ Y + G + +AR LFD+  +++VV W
Sbjct: 215 QVHTVVVKNGLD------KTIPVSN-----SLINLYLKCGNVRKARILFDKTEVKSVVTW 263

Query: 268 NAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRL-LDQMP 322
           N+MI+ Y   G   EA  +F  M       +  S+ ++I     + +L    +L    + 
Sbjct: 264 NSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVK 323

Query: 323 YKNIAAQ---TAMISGYVQNKRMDEANQIFDKIG-THDVVCWNVMIKGYAQCGRMDEAIN 378
           Y  +  Q   TA++  Y +   M +A ++F +IG   +VV W  MI G+ Q    +EA++
Sbjct: 324 YGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVD 383

Query: 379 LFRQM--------------------------VNKDIVTWN---------TMIAGYAQIRQ 403
           LF +M                          V+  +V  N          ++  Y ++ +
Sbjct: 384 LFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGK 443

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS 463
           +++A K+F  +  + + V+W+A+++G+ Q      A+K+F  +T+ G K +  T +  L+
Sbjct: 444 VEEAAKVFSGIDDK-DIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILN 502

Query: 464 ACAHL-AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
            CA   A++  G+Q H  AIKS   + L V ++L+TMYAK G I++AE +FK     D++
Sbjct: 503 VCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLV 562

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           SWNS+I+GYA +G A +A+ +F+EM    V  D VTFIGV +AC+H GLV+ G K F+ M
Sbjct: 563 SWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIM 622

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKL 642
                I P  EH +CM+DL SRAG+L++A ++++ M     + IW T+L ACR+H+  +L
Sbjct: 623 VRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTEL 682

Query: 643 GRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKN 702
           GR+A EK+  ++P+ ++ Y LLSNM+AE+G W E  KVR  M     +K+PG SWIEVKN
Sbjct: 683 GRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKN 742

Query: 703 QIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           + ++FL+GD       +I   L+ L+ ++++
Sbjct: 743 KTYSFLAGDRSHPLKDQIYMKLEDLSTRLKD 773



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 132/548 (24%), Positives = 235/548 (42%), Gaps = 130/548 (23%)

Query: 211 GYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF-------------- 256
           G V    L +A   F K P ++  S++++L G++R+GR  EA+RLF              
Sbjct: 36  GTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSI 95

Query: 257 ------------DQMPIR-------------NVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
                       D++  R             +V    +++  Y++    ++  ++F EM 
Sbjct: 96  FSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMK 155

Query: 292 ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY---------------------------- 323
           ERN V+WTT+I GY R +  DE   L  +M                              
Sbjct: 156 ERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQ 215

Query: 324 -----------KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGR 372
                      K I    ++I+ Y++   + +A  +FDK     VV WN MI GYA  G 
Sbjct: 216 VHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGL 275

Query: 373 MDEAINLFRQM------------------------------VNKDIVTW---------NT 393
             EA+ +F  M                              ++  +V +           
Sbjct: 276 DLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTA 335

Query: 394 MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA 453
           ++  Y++   M DA+++F+E+G   N VSW A+ISGFLQN+   +A+ +F  M ++G + 
Sbjct: 336 LMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRP 395

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
           +  T +  L+A   ++      ++H   +K+ Y     VG +L+  Y K G+++ A  +F
Sbjct: 396 NEFTYSVILTALPVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVF 451

Query: 514 KDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVD 573
              D  D+++W++++AGYA  G    AIK+F E+   G+ P+  TF  +L+ C+      
Sbjct: 452 SGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASM 511

Query: 574 GGLKLFECMTEVYAIEPLVEHYAC----MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629
           G  K F      +AI+  ++   C    ++ + ++ G ++ A E+ K  + K     W +
Sbjct: 512 GQGKQFHG----FAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVS-WNS 566

Query: 630 LLGACRMH 637
           ++     H
Sbjct: 567 MISGYAQH 574



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 109/445 (24%), Positives = 187/445 (42%), Gaps = 86/445 (19%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV-----SWN 81
           K G V +A  +F +   K+ VT+NSMIS YA NG   +A  +F  M + N V     S+ 
Sbjct: 241 KCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSM-RLNYVRLSESSFA 299

Query: 82  SMI-----------AGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
           S+I              LH   VK    LFD+  R      ALM+  Y++   +  A  L
Sbjct: 300 SVIKLCANLKELRFTEQLHCSVVKYGF-LFDQNIRT-----ALMVA-YSKCTAMLDALRL 352

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGE 186
           F  +    +   W AM++G+ +     EA  L   M  K +     +++ +L+       
Sbjct: 353 FKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISP 412

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARN 246
             + ++  +   ER       +LD YV+L  ++ A K F  I ++++V+W  ML+GYA+ 
Sbjct: 413 SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQT 472

Query: 247 GRMLEARRLFDQM-------------PIRNVVAW-------------------------- 267
           G    A ++F ++              I NV A                           
Sbjct: 473 GETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCV 532

Query: 268 -NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
            +A++  Y ++G IE A  +F    E++ VSW +MI GY +  +  +A  +  +M  + +
Sbjct: 533 SSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKV 592

Query: 327 AAQTAMISGY----VQNKRMDEANQIFD------KIGT---HDVVCWNVMIKGYAQCGRM 373
                   G          ++E  + FD      KI     H+    + M+  Y++ G++
Sbjct: 593 KMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHN----SCMVDLYSRAGQL 648

Query: 374 DEAINLFRQMVNKDIVT-WNTMIAG 397
           ++A+ +   M N    T W T++A 
Sbjct: 649 EKAMKVIENMPNPAGSTIWRTILAA 673



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 102/194 (52%), Gaps = 14/194 (7%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL---- 77
           +T   K G +E A ++F +  +K+ V++NSMIS YA++G+   A  +F++M +R +    
Sbjct: 537 LTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDG 596

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARELFD 132
           V++  + A   H   V+E  + FD M R     P     + M+  Y+R G+LEKA ++ +
Sbjct: 597 VTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIE 656

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNEAKKL----LDAMPSKNIVSWNSMLSGYTKNGEMH 188
            +PN   +  W  ++A   ++    E  +L    + AM  ++  ++  + + Y ++G+  
Sbjct: 657 NMPNPAGSTIWRTILAA-CRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQ 715

Query: 189 LASKFFEAMEERDV 202
             +K  + M ER+V
Sbjct: 716 ERAKVRKLMNERNV 729



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 143/326 (43%), Gaps = 30/326 (9%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K G+VEEA K+FS +  K+ V +++M++ YA+ G    A K+F ++ +  +       + 
Sbjct: 440 KLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSS 499

Query: 87  YLH-----NDKVKEARELFDKMFRPDLFS----WALMITCYTRKGELEKARELFDLLPNK 137
            L+     N  + + ++      +  L S     + ++T Y +KG +E A E+F     K
Sbjct: 500 ILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREK 559

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASKF 193
            D   WN+M++GYA+ G   +A  +   M  + +    V++  + +  T  G +    K+
Sbjct: 560 -DLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKY 618

Query: 194 FEAMEERDVVSW-----NLMLDGYVELDDLDSAWKFFQKIPEQ-NVVSWVTMLSGYARNG 247
           F+ M     ++      + M+D Y     L+ A K  + +P       W T+L+   R  
Sbjct: 619 FDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAA-CRVH 677

Query: 248 RMLEARRLFDQ----MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN-----PVSW 298
           +  E  RL  +    M   +  A+  +   Y + G  +E A++   M ERN       SW
Sbjct: 678 KKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSW 737

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYK 324
             + +        D +  L DQ+  K
Sbjct: 738 IEVKNKTYSFLAGDRSHPLKDQIYMK 763


>gi|326507326|dbj|BAJ95740.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 798

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 213/641 (33%), Positives = 348/641 (54%), Gaps = 30/641 (4%)

Query: 109 FSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS 168
           F++  M+  + + G++  AR LFD +P + +   +  MV    K G   EA +L +  PS
Sbjct: 152 FTYDFMVHEHVKAGDIASARGLFDGMPER-NVVSYTTMVDALMKRGRVAEAVELYEQCPS 210

Query: 169 KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYV-------ELDD 217
            ++  + + +SG+ +N   H A   F  M    V    +++  M+   V        +  
Sbjct: 211 GSVAFFTATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSI 270

Query: 218 LDSAWK--FFQK-IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
           + SA K  FF+  I  QN     ++++ Y R G    AR++FD+M +++VV+W A++  Y
Sbjct: 271 VGSAIKSNFFESSIEVQN-----SLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVY 325

Query: 275 VQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM----PYKNIAAQT 330
            + G ++ A R+   MPERN VSW T+I  + +     EA +L  QM       NI+  +
Sbjct: 326 SESGDLDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFS 385

Query: 331 AMISGYVQNKRMDEANQIFD---KIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
           +++S     + +    +I     K+G+  +V   + +I  Y +C +  +A  +F  +  K
Sbjct: 386 SVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEK 445

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446
           +IV WN++ +GY+   +M +A+ +F++M   RN  SWN +ISG+ QN   +DAL+ F  M
Sbjct: 446 NIVCWNSLASGYSYNGKMVEAMYLFKKM-PARNLASWNTIISGYAQNRQFVDALRSFNAM 504

Query: 447 TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI 506
              G+     T +  L ACA+L +L  G+  H   IK G    +F+G +L  MYAK G +
Sbjct: 505 LASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDL 564

Query: 507 QNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
           Q+++ +F      + ++W ++I G A NG A E+I L E+M+  G+ P+  TF+ +L AC
Sbjct: 565 QSSKRMFYQMPERNDVTWTAMIQGLAENGFAEESILLLEDMMATGMTPNEHTFLALLFAC 624

Query: 567 SHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGI 626
           SH GLV+  +  FE M + + I P  +HY CM+D+L+RAGRL EA  ++     K  A  
Sbjct: 625 SHGGLVEQAIHYFEKM-QAWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANS 683

Query: 627 WGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEG 686
           W  LL AC  ++N ++G  A ++L EL    T+ Y LLSNM+A  GRW +  ++RV M+G
Sbjct: 684 WAALLSACNTYKNEEIGERAAKRLHELGKDNTAGYVLLSNMYASCGRWKDAARIRVLMKG 743

Query: 687 SGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
           +  +K  GCSW++V+ Q H F S + K   + EI   L  L
Sbjct: 744 TTLKKDGGCSWVQVRGQYHAFFSWEAKHPLSMEINEILDLL 784



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 146/594 (24%), Positives = 266/594 (44%), Gaps = 111/594 (18%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F  +  + +  K+G +  A  +F  M ++N V+Y +M+ A  K GRV +A +L+EQ P  
Sbjct: 152 FTYDFMVHEHVKAGDIASARGLFDGMPERNVVSYTTMVDALMKRGRVAEAVELYEQCPSG 211

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALM----------------- 114
           ++  + + I+G++ N+    A  +F KM     RP+  ++  M                 
Sbjct: 212 SVAFFTATISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIV 271

Query: 115 -------------------ITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGN 155
                              IT Y R G+   AR++FD +  K D   W A++  Y++ G+
Sbjct: 272 GSAIKSNFFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVK-DVVSWTALLDVYSESGD 330

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDG 211
            + A+++LDAMP +N VSW ++++ + + G    A K +  M       ++  ++ +L  
Sbjct: 331 LDGARRVLDAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSA 390

Query: 212 YVELDDLDSAWKFFQKI----PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
              L+DL    +   +        NV    +++  Y +  +  +A+ +FD +P +N+V W
Sbjct: 391 CATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCW 450

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLD------QM 321
           N++ + Y   G++ EA  LF +MP RN  SW T+I GY +  +  +A R  +      Q+
Sbjct: 451 NSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQV 510

Query: 322 P----YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG-YAQCGRMDEA 376
           P    + ++    A +   V  K M  A  I  K+G  + +     +   YA+ G +  +
Sbjct: 511 PGEITFSSVLLACANLCSLVTGK-MAHAKTI--KLGMEESIFIGTALSDMYAKSGDLQSS 567

Query: 377 INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALI-----S 428
             +F QM  ++ VTW  MI G A+    ++++ + E+M   G   N  ++ AL+      
Sbjct: 568 KRMFYQMPERNDVTWTAMIQGLAENGFAEESILLLEDMMATGMTPNEHTFLALLFACSHG 627

Query: 429 GFLQNEFH--------------------LDAL-------KIFVLMTQEGKKADHSTLACA 461
           G ++   H                    +D L       +   L+ +   K++ ++ A  
Sbjct: 628 GLVEQAIHYFEKMQAWGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAAL 687

Query: 462 LSACAHLAALQLG----RQIHHLAI--KSGYVNDLFVGNSLITMYAKCGRIQNA 509
           LSAC      ++G    +++H L     +GYV        L  MYA CGR ++A
Sbjct: 688 LSACNTYKNEEIGERAAKRLHELGKDNTAGYV-------LLSNMYASCGRWKDA 734



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 123/467 (26%), Positives = 221/467 (47%), Gaps = 34/467 (7%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           QN  IT   + G    A K+F +M  K+ V++ +++  Y+++G ++ AR++ + MP+RN 
Sbjct: 287 QNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLDAMPERNE 346

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMIT-CYT----RKGELEKAR 128
           VSW ++IA +       EA +L+ +M     RP++  ++ +++ C T    R G    AR
Sbjct: 347 VSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLEDLRGGARIHAR 406

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
            L   + +  +    ++++  Y K     +A+ + D +P KNIV WNS+ SGY+ NG+M 
Sbjct: 407 SL--KMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYSYNGKMV 464

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ------KIPEQNVVSWVTMLSG 242
            A   F+ M  R++ SWN ++ GY +      A + F       ++P +   S V +   
Sbjct: 465 EAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSSVLLACA 524

Query: 243 ---YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWT 299
                  G+M  A+ +   M   ++    A+   Y + G ++ + R+F +MPERN V+WT
Sbjct: 525 NLCSLVTGKMAHAKTIKLGME-ESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWT 583

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFDKIGTH 355
            MI G       +E+  LL+ M    +        A++        +++A   F+K+   
Sbjct: 584 AMIQGLAENGFAEESILLLEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFEKMQAW 643

Query: 356 DVVC----WNVMIKGYAQCGRMDEAINLFRQMVNK-DIVTWNTMIAG---YAQIRQMDDA 407
            +      +  M+   A+ GR+ EA  L  +  +K +  +W  +++    Y      + A
Sbjct: 644 GISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYKNEEIGERA 703

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
            K   E+GK  NT  +  L + +       DA +I VLM     K D
Sbjct: 704 AKRLHELGK-DNTAGYVLLSNMYASCGRWKDAARIRVLMKGTTLKKD 749



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 150/324 (46%), Gaps = 23/324 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  +  I    K  +  +A  IF  + +KN V +NS+ S Y+ NG++ +A  LF++MP 
Sbjct: 416 VFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYSYNGKMVEAMYLFKKMPA 475

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPD------LFSWALMIT---CYTRKGELE 125
           RNL SWN++I+GY  N +  +A   F+ M           FS  L+     C    G++ 
Sbjct: 476 RNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSSVLLACANLCSLVTGKMA 535

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
            A+ +   L  +E      A+   YAK G+   +K++   MP +N V+W +M+ G  +NG
Sbjct: 536 HAKTI--KLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQGLAENG 593

Query: 186 EMHLASKFFEAMEERDVV----SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS----WV 237
               +    E M    +     ++  +L        ++ A  +F+K+    +      + 
Sbjct: 594 FAEESILLLEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFEKMQAWGISPKEKHYT 653

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVV-AWNAMIAA---YVQRGQIEEAARLFIEMPER 293
            M+   AR GR++EA  L  + P ++   +W A+++A   Y      E AA+   E+ + 
Sbjct: 654 CMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLSACNTYKNEEIGERAAKRLHELGKD 713

Query: 294 NPVSWTTMIDGYVRIAKLDEARRL 317
           N   +  + + Y    +  +A R+
Sbjct: 714 NTAGYVLLSNMYASCGRWKDAARI 737


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 189/586 (32%), Positives = 317/586 (54%), Gaps = 50/586 (8%)

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
           N +L+ Y K G    A + F+AM   ++ ++N +L        L      F  + ++++V
Sbjct: 45  NHLLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRDIV 104

Query: 235 SWVTMLSGYARNGRMLEARRLF------DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFI 288
           S+  +++G++  G   +A R++      D     + +  + M+ A    G      +   
Sbjct: 105 SYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHC 164

Query: 289 EMPE----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDE 344
           ++       N    + ++D Y +++ + +A+R  D++  KN+     MI+G ++ K ++E
Sbjct: 165 QILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEE 224

Query: 345 ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM--------------------- 383
           A ++F+ +   D + W  M+ G+ Q G   EA+ +FR+M                     
Sbjct: 225 ARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGA 284

Query: 384 ------------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
                              + ++   + ++  Y++ R +  A  +F  M   +N +SW A
Sbjct: 285 LSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRM-TCKNIISWTA 343

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485
           LI G+ QN    +A+++F  M ++G   D  TL   +S+CA+LA+L+ G Q H LA+ SG
Sbjct: 344 LIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSG 403

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
            ++ + V N+L+T+Y KCG I++A  LF +    D +SW +L++GYA  G A E I LFE
Sbjct: 404 LMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFE 463

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRA 605
           +M+ +GV PD VTFIGVLSACS  G V+ G   F  M + + I P+ +HY CMIDL SR+
Sbjct: 464 KMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRS 523

Query: 606 GRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLS 665
           G+L EA E +K M + P+A  WGTLL ACR+  ++++G+ A E L E++PQ  + Y LL 
Sbjct: 524 GKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPASYVLLC 583

Query: 666 NMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD 711
           +MHA  G+W+EV ++R  M     +K+PGCSWI+ KN++H F + D
Sbjct: 584 SMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADD 629



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/463 (25%), Positives = 211/463 (45%), Gaps = 60/463 (12%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +T  GK+GR   A ++F  M   N  TYN+++S  A    ++D   LF  M QR++V
Sbjct: 45  NHLLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRDIV 104

Query: 79  SWNSMIAGYLHNDKVKEARELF------DKMFRPDLFSWALMITCYTRKGELEKAREL-- 130
           S+N++IAG+       +A  ++      D   RP   + + M+   +  G+    ++   
Sbjct: 105 SYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHC 164

Query: 131 -FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
               L    +    + +V  YAK+    +AK+  D + SKN+V +N+M++G  +   +  
Sbjct: 165 QILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEE 224

Query: 190 ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ------------------ 231
           A + FE M +RD ++W  M+ G+ +      A + F+++  Q                  
Sbjct: 225 ARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGA 284

Query: 232 ---------------------NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAM 270
                                NV     ++  Y++   +  A  +F +M  +N+++W A+
Sbjct: 285 LSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTAL 344

Query: 271 IAAYVQRGQIEEAARLFIEMPER--NPVSWT--TMIDGYVRIAKLDEARRL----LDQMP 322
           I  Y Q G  EEA R+F EM     +P  +T  ++I     +A L+E  +     L    
Sbjct: 345 IVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGL 404

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
              I    A+++ Y +   +++A+++FD++  HD V W  ++ GYAQ GR  E I+LF +
Sbjct: 405 MHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEK 464

Query: 383 MVNK----DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
           M+ K    D VT+  +++  ++   ++     F  M K    V
Sbjct: 465 MLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIV 507



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 186/407 (45%), Gaps = 48/407 (11%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G+  F  +  +    K   V +A + F ++  KN V YN+MI+   +   V +AR+LFE 
Sbjct: 172 GANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEV 231

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKA 127
           M  R+ ++W +M+ G+  N    EA E+F +M       D +++  ++T       LE+ 
Sbjct: 232 MTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQG 291

Query: 128 RELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
           +++   +      ++    +A+V  Y+K  +   A+ +   M  KNI+SW +++ GY +N
Sbjct: 292 KQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQN 351

Query: 185 GEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT-- 238
           G    A + F  M+    + D  +   ++     L  L+   +F        ++ ++T  
Sbjct: 352 GCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVS 411

Query: 239 --MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
             +++ Y + G + +A RLFD+M   + V+W A+++ Y Q G+ +E   LF +M  +   
Sbjct: 412 NALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKG-- 469

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKR-----MDEANQIFDK 351
                 DG   I  L    R                 +G+V+  R     M + + I   
Sbjct: 470 ---VKPDGVTFIGVLSACSR-----------------AGFVEKGRSYFHSMQKDHGIV-P 508

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAG 397
           I  H    +  MI  Y++ G++ EA    +QM ++ D + W T+++ 
Sbjct: 509 IDDH----YTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSA 551


>gi|449469206|ref|XP_004152312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08490-like [Cucumis sativus]
          Length = 873

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 228/800 (28%), Positives = 391/800 (48%), Gaps = 123/800 (15%)

Query: 48  TYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGY----LHNDKVKEARELFDKM 103
            Y  +++ YA+ G  ++  KLFEQ+  R++V+WN +++GY    +H+ K   A  LF KM
Sbjct: 80  VYKGLLNLYARCGAFDECWKLFEQLNHRDVVTWNIILSGYCRSQIHDTK---AIRLFVKM 136

Query: 104 -----FRPDLFSWALMITCYTR--KGELEKARELFDLLPNKE-DTACWNAMVAGYAKIGN 155
                 +P   + A ++   +R  KG + K+   F +    + DT   NA+++ YAK G 
Sbjct: 137 HAEGEVKPSAITIASILPVCSRVGKGVVGKSIHSFVMKSGLDRDTLVGNALISMYAKSGQ 196

Query: 156 -YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE--------------- 199
            + +A    +++  K++V+WN+++S   +   M  A + F  M E               
Sbjct: 197 PWYDAYAAFNSIIHKDVVTWNTIISALAEKNLMFDALQLFSLMLEEPIEPNYITIACILP 256

Query: 200 ----------------------------RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ 231
                                        D+   N +++ Y+ +  ++ A   F  + ++
Sbjct: 257 VCASFGNNVSCRFGKEIHGYIHRRTELIEDISVCNALMNLYLRVGQMEEAEILFSHLKQR 316

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQM-------------------------------- 259
           ++VSW T++SGY+ N + LEA   F ++                                
Sbjct: 317 DLVSWNTLISGYSLNDKWLEAVDHFCKLLCLGSDPDSVTLISVLPACAYSQNLRIGKMIH 376

Query: 260 ------PI--RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKL 311
                 P+   +    NA+++ Y +   ++ A   F  +  ++ +SW ++++ +      
Sbjct: 377 GYILRHPVLSEDSTVGNALVSFYTKCNDVKSAFHSFSLISSKDLISWNSVLNAFAEFGNT 436

Query: 312 DEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW----------- 360
            +  RLL  M  +        I   +     +    +       +V C+           
Sbjct: 437 TQFPRLLHLMLRERFKPDHFTILSII-----NFCITVLGGCKVKEVHCYSVRACLFEADY 491

Query: 361 -----NVMIKGYAQCGRMDEAINLFRQMVNK-DIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
                N ++  Y++CG +D A+ +F     K ++VT N+MI+ Y   +  +DA+ IF  M
Sbjct: 492 GPTILNALLDAYSKCGIIDYALKIFESSSGKRNLVTCNSMISCYVNCKSPNDALTIFSGM 551

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
            +   T +WN +I  + +N    DAL +F  +  +G K D  ++   L  C  LA+ +L 
Sbjct: 552 SETDLT-TWNLMIRVYAENNCPRDALGLFRRLQIKGMKPDAVSIMSLLPVCNELASFRLL 610

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
           ++ H  + +S +  D+++  +L+  YAKCG +  A  LF+ +   D++ + S+I+GYAI+
Sbjct: 611 KECHGYSFRSRF-EDVYLDGALLDAYAKCGAVDCAYKLFESSSQKDLVMFTSMISGYAIH 669

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEH 594
           G   EA+K+F  M+  GV PD V    +LSACSH GLVD GL +F  M EV  I+P +EH
Sbjct: 670 GMGEEALKVFTNMLESGVKPDHVVVTSILSACSHTGLVDQGLNIFHSMEEVIHIKPTMEH 729

Query: 595 YACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE 654
           YAC++DLL+R GR+ +A+  V GM I+P+A IWGTLLGAC+ H  ++LG +  E+L E +
Sbjct: 730 YACVVDLLARGGRIKDAYSFVIGMPIQPDANIWGTLLGACKTHHEVELGLVVAEQLFETK 789

Query: 655 PQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQ 714
                 Y ++SN++A   +WD V +VR  M+    +K PGCSWIEV+ + + FL+GD   
Sbjct: 790 ADDIGNYVVMSNLYAADAKWDGVLEVRKLMKEKELKKPPGCSWIEVEGEKNFFLAGDSLH 849

Query: 715 CRTAEICNTLKTLAAQIRNT 734
            +   I N L TL  QI+ T
Sbjct: 850 PQRNMIYNLLNTLHQQIKRT 869



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 125/284 (44%), Gaps = 25/284 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIF-SQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           N  +    K G ++ A+KIF S   ++N VT NSMIS Y      NDA  +F  M + +L
Sbjct: 497 NALLDAYSKCGIIDYALKIFESSSGKRNLVTCNSMISCYVNCKSPNDALTIFSGMSETDL 556

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFS-WALMITCYTRKGELEKAREL-- 130
            +WN MI  Y  N+  ++A  LF ++     +PD  S  +L+  C     EL   R L  
Sbjct: 557 TTWNLMIRVYAENNCPRDALGLFRRLQIKGMKPDAVSIMSLLPVC----NELASFRLLKE 612

Query: 131 ---FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
              +      ED     A++  YAK G  + A KL ++   K++V + SM+SGY  +G  
Sbjct: 613 CHGYSFRSRFEDVYLDGALLDAYAKCGAVDCAYKLFESSSQKDLVMFTSMISGYAIHGMG 672

Query: 188 HLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPE-----QNVVSWVT 238
             A K F  M E     D V    +L        +D     F  + E       +  +  
Sbjct: 673 EEALKVFTNMLESGVKPDHVVVTSILSACSHTGLVDQGLNIFHSMEEVIHIKPTMEHYAC 732

Query: 239 MLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE 281
           ++   AR GR+ +A      MPI+ +   W  ++ A     ++E
Sbjct: 733 VVDLLARGGRIKDAYSFVIGMPIQPDANIWGTLLGACKTHHEVE 776



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 4/153 (2%)

Query: 422 SWNALISGFLQNEFHLDALKIFV--LMTQEGKKADHSTLACALSACAHLAALQLGRQIHH 479
           SW++ I     N  H + L +FV       G K D+   A    +CA L A+ +G+ +  
Sbjct: 8   SWSSTIRNLCLNAKHQEVLSVFVHKFQCSSGFKPDNHIFAAIFKSCAALFAINIGKALQG 67

Query: 480 LAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING-NAT 538
            A+K G +    V   L+ +YA+CG       LF+  +  DV++WN +++GY  +  + T
Sbjct: 68  YAVKQGEIACQSVYKGLLNLYARCGAFDECWKLFEQLNHRDVVTWNIILSGYCRSQIHDT 127

Query: 539 EAIKLFEEMVMEG-VAPDPVTFIGVLSACSHVG 570
           +AI+LF +M  EG V P  +T   +L  CS VG
Sbjct: 128 KAIRLFVKMHAEGEVKPSAITIASILPVCSRVG 160



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 92/423 (21%), Positives = 181/423 (42%), Gaps = 57/423 (13%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR--- 75
           N  ++   K   V+ A   FS +S K+ +++NS+++A+A+ G      +L   M +    
Sbjct: 393 NALVSFYTKCNDVKSAFHSFSLISSKDLISWNSVLNAFAEFGNTTQFPRLLHLMLRERFK 452

Query: 76  ----NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
                ++S  +     L   KVKE                   + CY+ +  L +A    
Sbjct: 453 PDHFTILSIINFCITVLGGCKVKE-------------------VHCYSVRACLFEA---- 489

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK-NIVSWNSMLSGYTKNGEMHLA 190
           D  P        NA++  Y+K G  + A K+ ++   K N+V+ NSM+S Y      + A
Sbjct: 490 DYGPT-----ILNALLDAYSKCGIIDYALKIFESSSGKRNLVTCNSMISCYVNCKSPNDA 544

Query: 191 SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI------PEQ-NVVSWVTMLSGY 243
              F  M E D+ +WNLM+  Y E +    A   F+++      P+  +++S + + +  
Sbjct: 545 LTIFSGMSETDLTTWNLMIRVYAENNCPRDALGLFRRLQIKGMKPDAVSIMSLLPVCNEL 604

Query: 244 ARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMID 303
           A    + E      +    +V    A++ AY + G ++ A +LF    +++ V +T+MI 
Sbjct: 605 ASFRLLKECHGYSFRSRFEDVYLDGALLDAYAKCGAVDCAYKLFESSSQKDLVMFTSMIS 664

Query: 304 GYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
           GY      +EA ++   M    +       T+++S       +D+   IF  +   +V+ 
Sbjct: 665 GYAIHGMGEEALKVFTNMLESGVKPDHVVVTSILSACSHTGLVDQGLNIFHSM--EEVIH 722

Query: 360 WNVMIKGY-------AQCGRMDEAINLFRQM-VNKDIVTWNTMIAGYAQIRQMDDAVKIF 411
               ++ Y       A+ GR+ +A +    M +  D   W T++       +++  + + 
Sbjct: 723 IKPTMEHYACVVDLLARGGRIKDAYSFVIGMPIQPDANIWGTLLGACKTHHEVELGLVVA 782

Query: 412 EEM 414
           E++
Sbjct: 783 EQL 785


>gi|218187045|gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
          Length = 1084

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 236/759 (31%), Positives = 390/759 (51%), Gaps = 101/759 (13%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
           K+ +  N +I  Y+KNG V  AR++FE++  R+ VSW +M++GY  N   +EA  L+ +M
Sbjct: 75  KDRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALWLYRQM 134

Query: 104 FR------PDLFSWAL---------------------------------MITCYTRKGEL 124
            R      P + S  L                                 +IT Y R G  
Sbjct: 135 HRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFVGNALITLYLRCGSF 194

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSG 180
             A  +F  +P++ DT  +N +++G+A+  +   A ++ + M S  +    V+ +S+L+ 
Sbjct: 195 RLAERVFYDMPHR-DTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSPDCVTISSLLAA 253

Query: 181 YTKNGEMH----LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSW 236
               G++     L S  F+A    D +    +LD YV+  D+++A   F      NVV W
Sbjct: 254 CASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNLGNRTNVVLW 313

Query: 237 VTMLSGYARNGRMLEARRLFDQMP---IR-NVVAWNAMIAAYVQRGQI---EEAARLFIE 289
             +L  + +   + ++  LF QM    IR N   +  ++      G+I   E+   L ++
Sbjct: 314 NLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGEQIHSLSVK 373

Query: 290 MP-ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQI 348
              E +      +ID Y +   L++ARR+L+ +  K++ + T+MI+GYVQ++   +A   
Sbjct: 374 TGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHEYCKDALAA 433

Query: 349 FDKIGTHDVVCWNV----MIKGYAQCGRMDEAINLFRQMV----NKDIVTWNTMIAGYAQ 400
           F ++    +   N+     I G A    M + + +  ++     + D+  WN ++  YA+
Sbjct: 434 FKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARVYVSGYSGDVSIWNALVNLYAR 493

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
             ++ +A   FEE+ + ++ ++WN L+SGF Q+  H +ALK+F+ M Q G K +  T   
Sbjct: 494 CGRIREAFSSFEEI-EHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVS 552

Query: 461 ALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVD 520
           ALSA A+LA ++ G+QIH   IK+G+  +  VGN+LI++Y KCG  ++A++ F +    +
Sbjct: 553 ALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERN 612

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE 580
            +SWN++I   + +G   EA+  F++M  EG                        L  F+
Sbjct: 613 EVSWNTIITSCSQHGRGLEALDFFDQMKKEG------------------------LSYFK 648

Query: 581 CMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNI 640
            M++ Y I P  +HYAC+ID+  RAG+LD A + V+ M I  +A +W TLL AC++H+NI
Sbjct: 649 SMSDKYGIRPRPDHYACVIDIFGRAGQLDRAKKFVEEMPIAADAMVWRTLLSACKVHKNI 708

Query: 641 KLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEV 700
           ++G +A + L ELEP  ++ Y LLSN +A  G+W   ++VR  M   G +K+PG SWIEV
Sbjct: 709 EVGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMRDRGVRKEPGRSWIEV 768

Query: 701 KNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNTPLAVI 739
           KN +H F  GD            L  LA QI N  LAVI
Sbjct: 769 KNVVHAFFVGD-----------RLHPLAEQIYNF-LAVI 795



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 135/596 (22%), Positives = 266/596 (44%), Gaps = 62/596 (10%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S  F  N  IT   + G    A ++F  M  ++TVT+N++IS +A+      A ++FE+M
Sbjct: 176 SETFVGNALITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEM 235

Query: 73  PQRNL----VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALM----ITCYTRKGEL 124
               L    V+ +S++A       +++  +L   +F+  + S  +M    +  Y + G++
Sbjct: 236 QSSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDV 295

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSG 180
           E A  +F+ L N+ +   WN ++  + +I +  ++ +L   M +  I     ++  +L  
Sbjct: 296 ETALVIFN-LGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRT 354

Query: 181 YTKNGEMHLASKF----FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSW 236
            T  GE+ L  +      +   E D+    +++D Y +   L+ A +  + + E++VVSW
Sbjct: 355 CTCTGEIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSW 414

Query: 237 VTMLSGYARNGRMLEARRLF----------DQMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
            +M++GY ++    +A   F          D + + + ++  A I A  Q  QI   AR+
Sbjct: 415 TSMIAGYVQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIH--ARV 472

Query: 287 FIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEAN 346
           ++     +   W  +++ Y R  ++ EA    +++ +K+      ++SG+ Q+   +EA 
Sbjct: 473 YVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEAL 532

Query: 347 QIF---DKIGT-HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVTWNTMIAGY 398
           ++F   D+ G  H+V  +   +   A    + +   +  +++      +    N +I+ Y
Sbjct: 533 KVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLY 592

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG-------- 450
            +    +DA   F EM + RN VSWN +I+   Q+   L+AL  F  M +EG        
Sbjct: 593 GKCGSFEDAKMEFSEMSE-RNEVSWNTIITSCSQHGRGLEALDFFDQMKKEGLSYFKSMS 651

Query: 451 ------KKADHSTLACALSACAHLAALQLGRQ-IHHLAIKSGYVNDLFVGNSLITMYAKC 503
                  + DH   AC +        L   ++ +  + I +    D  V  +L++     
Sbjct: 652 DKYGIRPRPDH--YACVIDIFGRAGQLDRAKKFVEEMPIAA----DAMVWRTLLSACKVH 705

Query: 504 GRIQNAELLFK---DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
             I+  EL  K   + +P D  S+  L   YA+ G      ++ + M   GV  +P
Sbjct: 706 KNIEVGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMRDRGVRKEP 761



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/255 (30%), Positives = 137/255 (53%), Gaps = 13/255 (5%)

Query: 384 VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
           + KD +  N +I  Y++   +  A ++FEE+  R N VSW A++SG+ QN    +AL ++
Sbjct: 73  LGKDRIVGNLLIDLYSKNGLVLPARRVFEELSARDN-VSWVAMLSGYAQNGLGEEALWLY 131

Query: 444 VLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
             M + G       L+  LS+C        GR +H    K G+ ++ FVGN+LIT+Y +C
Sbjct: 132 RQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFVGNALITLYLRC 191

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
           G  + AE +F D    D +++N+LI+G+A   +   A+++FEEM   G++PD VT   +L
Sbjct: 192 GSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSPDCVTISSLL 251

Query: 564 SACSHVGLVDGGLKLFEC-----MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
           +AC+ +G +  G +L        M+  Y +E        ++DL  + G ++ A  ++  +
Sbjct: 252 AACASLGDLQKGTQLHSYLFKAGMSSDYIME------GSLLDLYVKCGDVETAL-VIFNL 304

Query: 619 KIKPNAGIWGTLLGA 633
             + N  +W  +L A
Sbjct: 305 GNRTNVVLWNLILVA 319



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 78/160 (48%), Gaps = 1/160 (0%)

Query: 417 RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC-AHLAALQLGR 475
           RR   S    ++GFL  E     L +F    ++         ACAL AC  +    Q+  
Sbjct: 3   RRGAASLGWSLAGFLAQEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQVVP 62

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
           +IH  AI  G   D  VGN LI +Y+K G +  A  +F++    D +SW ++++GYA NG
Sbjct: 63  EIHAKAITRGLGKDRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
              EA+ L+ +M   GV P P     VLS+C+   L   G
Sbjct: 123 LGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQG 162


>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 602

 Score =  353 bits (905), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 183/502 (36%), Positives = 295/502 (58%), Gaps = 10/502 (1%)

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW 298
           +++ Y++ G    A ++FD+M  RN+ +WN M++ Y + G+I+ A +LF +MPE++ VSW
Sbjct: 92  LINMYSKCGDYPSAYKVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSW 151

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGY----VQNKRMDEANQIFDKIGT 354
            TM+  Y +    ++A R   ++    I       +G     V+ K ++ + Q   ++  
Sbjct: 152 NTMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQAHGQVLV 211

Query: 355 ----HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKI 410
                ++V  + ++  YA+C  M +A  LF +M+ +D++ W TM++GYAQ   ++ A ++
Sbjct: 212 AGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEAAREL 271

Query: 411 FEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAA 470
           F+ M ++ N V+W +LI+G+ +++    AL++F  M     + D  T +  L A A +A+
Sbjct: 272 FDLMPEK-NPVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCLCASASIAS 330

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK-DADPVDVISWNSLIA 529
           L  G+QIH   I++    +  V +SLI MY+KCG ++   L+F    D  DV+ WN++I+
Sbjct: 331 LNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLMGDKWDVVLWNTIIS 390

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE 589
             A +G   EAI++F++MV  G+ PD +T I +L+ACSH GLV  GL+L+E +T  + + 
Sbjct: 391 SLAQHGRGQEAIQMFDDMVRLGMKPDRITLIVLLNACSHSGLVQEGLRLYESITSCHGVI 450

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649
           P  EHYAC+IDLL RAG  D     ++ M  KPN  IW  LLG CRMH NI+ GR   EK
Sbjct: 451 PNQEHYACLIDLLGRAGHFDTLMNQLEKMPCKPNDEIWNALLGVCRMHGNIEFGREVAEK 510

Query: 650 LSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLS 709
           + EL+PQ ++ Y LLS++HA  GRW+ VE VR  M     +K    SWIE++N++H+F +
Sbjct: 511 IIELDPQSSAAYVLLSSIHAAVGRWELVENVRQLMNERHVRKDRAISWIEIENKVHSFTA 570

Query: 710 GDPKQCRTAEICNTLKTLAAQI 731
            D        I   LK LA  +
Sbjct: 571 SDRLHPLKEVIYLALKQLAGHM 592



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 134/475 (28%), Positives = 232/475 (48%), Gaps = 64/475 (13%)

Query: 105 RPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLD 164
           RP+ F    +I  Y++ G+   A ++FD +  + +   WN M++GYAK+G    A+KL D
Sbjct: 83  RPNTFLANHLINMYSKCGDYPSAYKVFDEMSTR-NLYSWNGMLSGYAKLGKIKPARKLFD 141

Query: 165 AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDS 220
            MP K++VSWN+M+  Y K+G  + A +F+  +    +     S+  +L+  V++ +L+ 
Sbjct: 142 KMPEKDVVSWNTMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELEL 201

Query: 221 AWKFFQKIPE----QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ 276
           + +   ++       N+V   ++L  YA+   M +ARRLFD+M IR+V+AW  M++ Y Q
Sbjct: 202 SKQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQ 261

Query: 277 RGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL----------DQMPYKNI 326
            G +E A  LF  MPE+NPV+WT++I GY R     +A  L           DQ  + + 
Sbjct: 262 WGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSSC 321

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
              +A I+     K++     I   I  + +V  + +I  Y++CG ++    +F  M +K
Sbjct: 322 LCASASIASLNHGKQI-HGYLIRTNIRPNTIVV-SSLIDMYSKCGCLEVGRLVFDLMGDK 379

Query: 387 -DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVL 445
            D+V WNT+I+  AQ  +  +A+++F++                                
Sbjct: 380 WDVVLWNTIISSLAQHGRGQEAIQMFDD-------------------------------- 407

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS--GYVNDLFVGNSLITMYAKC 503
           M + G K D  TL   L+AC+H   +Q G +++  +I S  G + +      LI +  + 
Sbjct: 408 MVRLGMKPDRITLIVLLNACSHSGLVQEGLRLYE-SITSCHGVIPNQEHYACLIDLLGRA 466

Query: 504 GRIQNA--ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
           G       +L      P D I WN+L+    ++GN    I+   E+  + +  DP
Sbjct: 467 GHFDTLMNQLEKMPCKPNDEI-WNALLGVCRMHGN----IEFGREVAEKIIELDP 516



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 116/443 (26%), Positives = 205/443 (46%), Gaps = 46/443 (10%)

Query: 5   LKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND 64
           LK  G K    F  N  I    K G    A K+F +MS +N  ++N M+S YAK G++  
Sbjct: 76  LKVTGLKRPNTFLANHLINMYSKCGDYPSAYKVFDEMSTRNLYSWNGMLSGYAKLGKIKP 135

Query: 65  ARKLFEQMPQRNLVSWNSMIAGY----LHNDKVKEARELFDKMFRPDLFSWALMITCYTR 120
           ARKLF++MP++++VSWN+M+  Y      ND ++  REL       + +S+A ++    +
Sbjct: 136 ARKLFDKMPEKDVVSWNTMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGLLNICVK 195

Query: 121 KGELEKARE------LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSW 174
             ELE +++      +   L N   ++   +++  YAK     +A++L D M  +++++W
Sbjct: 196 VKELELSKQAHGQVLVAGFLSNLVISS---SVLDAYAKCSEMGDARRLFDEMIIRDVLAW 252

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
            +M+SGY + G++  A + F+ M E++ V+W  ++ GY   D    A + F K+   N+ 
Sbjct: 253 TTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIR 312

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
                                 DQ    + +  +A IA+     QI     L       N
Sbjct: 313 P---------------------DQFTFSSCLCASASIASLNHGKQIH--GYLIRTNIRPN 349

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFD--- 350
            +  +++ID Y +   L+  R + D M  K ++     +IS   Q+ R  EA Q+FD   
Sbjct: 350 TIVVSSLIDMYSKCGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMV 409

Query: 351 KIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWN-----TMIAGYAQIRQM 404
           ++G   D +   V++   +  G + E + L+  + +   V  N      +I    +    
Sbjct: 410 RLGMKPDRITLIVLLNACSHSGLVQEGLRLYESITSCHGVIPNQEHYACLIDLLGRAGHF 469

Query: 405 DDAVKIFEEMGKRRNTVSWNALI 427
           D  +   E+M  + N   WNAL+
Sbjct: 470 DTLMNQLEKMPCKPNDEIWNALL 492



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 32/165 (19%)

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIH-HLAIKSGYVNDLFVGNS 495
             A+    L+++ G +    TLA  L  CA+  +L+LG+ +H HL +      + F+ N 
Sbjct: 32  FQAISSLGLLSRNGIRLPSKTLAYLLQQCANTKSLKLGKWVHLHLKVTGLKRPNTFLANH 91

Query: 496 LITMYAKC-------------------------------GRIQNAELLFKDADPVDVISW 524
           LI MY+KC                               G+I+ A  LF      DV+SW
Sbjct: 92  LINMYSKCGDYPSAYKVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSW 151

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
           N+++  YA +G   +A++ + E+   G+  +  +F G+L+ C  V
Sbjct: 152 NTMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGLLNICVKV 196



 Score = 46.2 bits (108), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 89/205 (43%), Gaps = 24/205 (11%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQK-NTVTYNSMISAYAKNGRVNDARKLFEQM------PQ 74
           I    K G +E    +F  M  K + V +N++IS+ A++GR  +A ++F+ M      P 
Sbjct: 357 IDMYSKCGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPD 416

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARE 129
           R  ++   ++    H+  V+E   L++ +       P+   +A +I    R G  +    
Sbjct: 417 R--ITLIVLLNACSHSGLVQEGLRLYESITSCHGVIPNQEHYACLIDLLGRAGHFDTLMN 474

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNY----NEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
             + +P K +   WNA++      GN       A+K+++  P  +  ++  + S +   G
Sbjct: 475 QLEKMPCKPNDEIWNALLGVCRMHGNIEFGREVAEKIIELDPQSS-AAYVLLSSIHAAVG 533

Query: 186 EMHLASKFFEAMEERDV-----VSW 205
              L     + M ER V     +SW
Sbjct: 534 RWELVENVRQLMNERHVRKDRAISW 558


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  353 bits (905), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 237/831 (28%), Positives = 395/831 (47%), Gaps = 172/831 (20%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           QNK    +G +GR++ +I         +   Y+  +   +   R   A +LF++ P +++
Sbjct: 11  QNKAKITVG-NGRLQSSIHHIKHFLHPHGFLYHQSLPFISLPSRPRYAHQLFDETPLKDI 69

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
             +N ++  +  N+  +EA  LF      DL S  L +   T    L+    LFD +  +
Sbjct: 70  SHYNRLLFDFSRNNHDREALHLF-----KDLHSSGLGVDGLTLSCALKVCGVLFDQVVGR 124

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
           +                                 V   S+ SG+ +              
Sbjct: 125 Q---------------------------------VHCQSLKSGFLE-------------- 137

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFD 257
              DV     ++D Y++ +D +     F ++  +NVVSW ++LSGYARNG   E   L +
Sbjct: 138 ---DVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLIN 194

Query: 258 QMPIRNV---------------------------------------VAWNAMIAAYVQRG 278
           QM +  V                                          NA+I  Y++  
Sbjct: 195 QMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSE 254

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGY---------------VRIAKLDEAR-------R 316
            + +A  +F  M  R+ V+W  MI GY               +R+A +  +R       +
Sbjct: 255 MVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALK 314

Query: 317 LLDQMPYKNIAAQ-----------------TAMISGYVQNKRMDEANQIFDKI-GTHDVV 358
           L  Q    N   Q                 TA++  Y +   +DEA ++F      H+VV
Sbjct: 315 LCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVV 374

Query: 359 CWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAG----------------- 397
            W  MI G+ Q    ++A++LF QM    V  +  T++T++AG                 
Sbjct: 375 TWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAY 434

Query: 398 --------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
                         Y +   + ++ ++F  +   ++ V+W+A+++G  Q      A+++F
Sbjct: 435 YEKVPSVATALLDAYVKTGNVVESARVFYSI-PAKDIVAWSAMLTGLAQTRDSEKAMEVF 493

Query: 444 VLMTQEGKKADHSTLACALSACAHLAA-LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
           + + +EG K +  T +  ++AC+  AA ++ G+QIH  A+KSG  N L V ++L+TMY+K
Sbjct: 494 IQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSK 553

Query: 503 CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
            G I++AE +F   +  D++SWNS+I GY  +G+A +A+++F+ M  +G+  D VTFIGV
Sbjct: 554 KGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGV 613

Query: 563 LSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKP 622
           L+AC+H GLV+ G K F  M + Y I+  +EHY+CM+DL SRAG  D+A +++ GM    
Sbjct: 614 LTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGMPFPA 673

Query: 623 NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRV 682
           +  IW TLL ACR+H+N++LG++A EKL  L+P     Y LLSN+HA AG W+E   VR 
Sbjct: 674 SPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRK 733

Query: 683 SMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
            M+    +K+ GCSWIE+KN+I +FL+GD     +  +   L+ L+ ++++
Sbjct: 734 LMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLKD 784


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 240/791 (30%), Positives = 385/791 (48%), Gaps = 121/791 (15%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF   K +   GK G   +A+K+F +MS++   T+N+MI A    GR  +A +L+++M  
Sbjct: 82  VFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEM-- 139

Query: 75  RNL-VSWNSM----------------IAGYLHNDKVKEARELFDKMFRPDLFSWALMITC 117
           R L VS ++                 +   +H   VK     F       +F    +I  
Sbjct: 140 RVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGF-------VFVCNALIAM 192

Query: 118 YTRKGELEKARELFDL-LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM---------- 166
           Y + G+L  AR LFD  L  K+D   WN++++ +   G   EA  L   M          
Sbjct: 193 YAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTY 252

Query: 167 -----------PS------------------KNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
                      P+                   ++   N++++ Y   G+M  A + F++M
Sbjct: 253 TFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSM 312

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKI------PEQNVVSWVTMLSGYARNGRMLE 251
             +D VSWN +L G V+ D    A   FQ +      P+Q  VS + M++   R+  +L 
Sbjct: 313 LFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQ--VSVLNMIAASGRSANLLA 370

Query: 252 ARRL----FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVR 307
              +           N+   N++I  Y +   ++     F  MPE++ +SWTT+I GY +
Sbjct: 371 GMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQ 430

Query: 308 IAKLDEARRLLDQMPYKNIAAQTAMI-------SGYVQNKRMDEANQIFDKIGTHDVVCW 360
                +A  LL ++  + +     MI       SG    K + E +    K G  D++  
Sbjct: 431 NECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGLADILIQ 490

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
           N ++  Y +   +D A ++F  + +KDIV+W +M                          
Sbjct: 491 NAIVNVYGELALVDYARHVFESINSKDIVSWTSM-------------------------- 524

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
                 I+  + N   ++AL++F  + +   + D  TL   L A A L++L+ G++IH  
Sbjct: 525 ------ITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGF 578

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEA 540
            I+ G+  +  + NSL+ MYA+CG ++NA  +F      D+I W S+I    ++G   +A
Sbjct: 579 LIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCGKDA 638

Query: 541 IKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMID 600
           I LF +M  E V PD +TF+ +L ACSH GLV  G + FE M   Y +EP  EHYAC++D
Sbjct: 639 IDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVD 698

Query: 601 LLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSC 660
           LL+R+  L+EA+  V+ M I+P+A +W  LLGACR+H N  LG +A +KL +L  + +  
Sbjct: 699 LLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNTENSGN 758

Query: 661 YALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           Y L+SN  A  GRW++VE+VR  M+G+  +K+PGCSWIEV+N+IHTF++ D    ++   
Sbjct: 759 YVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVENKIHTFMARD----KSHPQ 814

Query: 721 CNTLKTLAAQI 731
           CN +    AQ 
Sbjct: 815 CNNIYLKLAQF 825



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 1/107 (0%)

Query: 461 ALSACAHLAALQLGRQIH-HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
           AL  CA   AL  G+Q+H H      Y++ +F+    + MY KCG   +A  +F      
Sbjct: 52  ALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSER 111

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
            + +WN++I      G   EAI+L++EM + GV+ D  TF  VL AC
Sbjct: 112 TIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKAC 158


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 186/515 (36%), Positives = 291/515 (56%), Gaps = 15/515 (2%)

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ER 293
           ++L  Y R G   +AR + D MP R VV W+A+IAA+   G  E A  L   M     E 
Sbjct: 60  SLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEP 119

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMIS------GYVQNKRMDEA-N 346
           N ++W  ++ G  R  +  +A   L +M  +        +S      G V +  + E  +
Sbjct: 120 NVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLH 179

Query: 347 QIFDKIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMD 405
               K G   D      +I  Y +CGR DE + +F +  + D+ + N ++AG ++  Q+ 
Sbjct: 180 GYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVS 239

Query: 406 DAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
           +A+++F E    G   N VSW ++++  +QN   L+A+ +F  M  EG + +  T+ C L
Sbjct: 240 EALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVL 299

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
            A A++AAL  GR  H  +++ G+ +D++VG++L+ MYAKCGR+++A ++F+     +V+
Sbjct: 300 PAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVV 359

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           SWN++I GYA++G A  A++LF  M      PD VTF  VL ACS  G  + G   F  M
Sbjct: 360 SWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEM 419

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKL 642
              + I P +EHYACM+ LL RAG+LD+A++++  M  +P+  IWG+LLG+CR+H N+ L
Sbjct: 420 QHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVL 479

Query: 643 GRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKN 702
             +A E L +LEP+    Y LLSN++A    WD V ++R  M+  G +K+ GCSWIE+KN
Sbjct: 480 AEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSWIEIKN 539

Query: 703 QIHTFLSGDPKQCRTAEICNTLKTLAAQIRNTPLA 737
           ++H  L+GD      A I   LK L  ++R    A
Sbjct: 540 KVHMLLAGDSSHPMMAAITEKLKHLTMEMRRLGFA 574



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 157/324 (48%), Gaps = 24/324 (7%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR----NL 77
           I   GK GR +E +++F + S  +  + N++++  ++N +V++A +LF +   R    N+
Sbjct: 198 IDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNV 257

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKAR--ELF 131
           VSW S++A  + N +  EA +LF +M      P+  +   ++  +     L   R    F
Sbjct: 258 VSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHCF 317

Query: 132 DLLPN-KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
            L      D    +A+V  YAK G   +A+ + +AMP +N+VSWN+M+ GY  +GE   A
Sbjct: 318 SLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENA 377

Query: 191 SKFFEAM----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLS 241
            + F +M    E+ D+V++  +L    +    +    +F ++  ++ +S     +  M++
Sbjct: 378 VRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVT 437

Query: 242 GYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVS 297
              R G++ +A  + +QMP   +   W +++ +    G +   E AA    ++   N  +
Sbjct: 438 LLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVLAEVAAENLFQLEPENAGN 497

Query: 298 WTTMIDGYVRIAKLDEARRLLDQM 321
           +  + + Y      D   RL D M
Sbjct: 498 YVLLSNIYASKKMWDGVNRLRDMM 521



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 161/367 (43%), Gaps = 60/367 (16%)

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           D F  + ++  Y R G    AR + D +P++     W+A++A +A  G+   A  LL+ M
Sbjct: 54  DAFVASSLLHAYLRFGATADARSVLDGMPHRTVVG-WSALIAAHASHGDAEGAWGLLERM 112

Query: 167 PS----KNIVSWNSMLSGYTKNG----------EMH------------------------ 188
            S     N+++WN ++SG  ++G           MH                        
Sbjct: 113 RSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDV 172

Query: 189 -----LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGY 243
                L     +A    D      ++D Y +    D   + F +    +V S   +++G 
Sbjct: 173 AVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGL 232

Query: 244 ARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNP 295
           +RN ++ EA RLF +   R    NVV+W +++A  VQ G+  EA  LF EM     E N 
Sbjct: 233 SRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNS 292

Query: 296 VSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK 351
           V+   ++  +  IA L   R      L +  + +I   +A++  Y +  R+ +A  IF+ 
Sbjct: 293 VTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEA 352

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVTWNTMIAGYAQIRQMDDA 407
           +   +VV WN MI GYA  G  + A+ LFR M +     D+VT+  ++   +Q    ++ 
Sbjct: 353 MPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEG 412

Query: 408 VKIFEEM 414
              F EM
Sbjct: 413 RSYFNEM 419



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 92/444 (20%), Positives = 173/444 (38%), Gaps = 116/444 (26%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
            ++    +S++ AY + G   DAR + + MP R +V W+++IA +  +   + A  L ++
Sbjct: 52  SRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLER 111

Query: 103 M----FRPDLFSWALMITCYTRKGELEKARELF------DLLPNKEDTAC---------- 142
           M      P++ +W  +++   R G    A            LP+    +C          
Sbjct: 112 MRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGD 171

Query: 143 ----------------------WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG 180
                                   A++  Y K G  +E  ++ D     ++ S N++++G
Sbjct: 172 VAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAG 231

Query: 181 YTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQN 232
            ++N ++  A + F     R    +VVSW  ++   V+      A   F+++     E N
Sbjct: 232 LSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPN 291

Query: 233 VVSWVTMLSG-----------------------------------YARNGRMLEARRLFD 257
            V+   +L                                     YA+ GR+ +AR +F+
Sbjct: 292 SVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFE 351

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM--PERNP--VSWTTMIDGYVRIAKLDE 313
            MP RNVV+WNAMI  Y   G+ E A RLF  M   +  P  V++T ++    +    +E
Sbjct: 352 AMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEE 411

Query: 314 ARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRM 373
            R   ++M +K           +  + RM+                +  M+    + G++
Sbjct: 412 GRSYFNEMQHK-----------HGISPRMEH---------------YACMVTLLGRAGKL 445

Query: 374 DEAINLFRQM-VNKDIVTWNTMIA 396
           D+A ++  QM    D   W +++ 
Sbjct: 446 DDAYDIINQMPFEPDGCIWGSLLG 469



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 46/86 (53%)

Query: 485 GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLF 544
           G   D FV +SL+  Y + G   +A  +        V+ W++LIA +A +G+A  A  L 
Sbjct: 50  GVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLL 109

Query: 545 EEMVMEGVAPDPVTFIGVLSACSHVG 570
           E M  +GV P+ +T+ G++S  +  G
Sbjct: 110 ERMRSDGVEPNVITWNGLVSGLNRSG 135


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 175/472 (37%), Positives = 275/472 (58%), Gaps = 6/472 (1%)

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG---QIEEAARLFIEMPERNPVSWTTM 301
           R G +  A   F    ++    +N ++A Y +     ++ +A RLF  +P  + VS+ T+
Sbjct: 24  RRGDLAGAEEAFASTQLKTTTTYNCLLAGYAKASGLIRLADARRLFDSIPHPDTVSYNTL 83

Query: 302 IDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWN 361
           +  +     +D ARR+   MP K++ +   M+SG  +N   +EA  +F  +   + V WN
Sbjct: 84  LSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVRNAVSWN 143

Query: 362 VMIKGYAQCGRMDEAINLFRQMVNK-DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
            M+   A  G M  A +LFR    K D + W  M++GY     +  A++ F  M   RN 
Sbjct: 144 AMVAALACSGDMGAAEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFFGAM-PVRNL 202

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEG-KKADHSTLACALSACAHLAALQLGRQIHH 479
           VSWNA+++G+++N    DAL++F  M ++   + + STL+  L  C++L+AL  GRQ+H 
Sbjct: 203 VSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQ 262

Query: 480 LAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATE 539
             +K     ++ VG SL++MY KCG + +A  +F +    D+++WN++I+GYA +G   +
Sbjct: 263 WCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQ 322

Query: 540 AIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMI 599
           AIKLFE+M  EGV PD +T + VL+AC H GL D G++ FE M E Y IEP ++HY+CM+
Sbjct: 323 AIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDHYSCMV 382

Query: 600 DLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTS 659
           DLL RAG L+ A  M+  M  +P+   +GTLL ACR+++N++    A  KL E +PQ   
Sbjct: 383 DLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAG 442

Query: 660 CYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD 711
            Y  L+N++A A +W +V +VR  M+ +   K PG SW+E+K   H F S D
Sbjct: 443 AYVQLANIYAVANKWADVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSND 494



 Score =  176 bits (445), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 157/283 (55%), Gaps = 10/283 (3%)

Query: 30  RVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLH 89
           R+ +A ++F  +   +TV+YN+++S +   G ++ AR++F  MP +++ SWN+M++G   
Sbjct: 61  RLADARRLFDSIPHPDTVSYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSK 120

Query: 90  NDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAG 149
           N   +EA  +F  M   +  SW  M+      G++  A +LF   P K D   W AMV+G
Sbjct: 121 NGASEEAAAMFRIMPVRNAVSWNAMVAALACSGDMGAAEDLFRNAPEKTDAILWTAMVSG 180

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL-- 207
           Y   GN  +A +   AMP +N+VSWN++++GY KN     A + F+ M E  +V  N   
Sbjct: 181 YMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNAST 240

Query: 208 ---MLDGYVELDDLDSAWKFFQ---KIP-EQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
              +L G   L  L    +  Q   K+P  +NV    ++LS Y + G + +A ++FD+M 
Sbjct: 241 LSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMS 300

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-SWTTMI 302
            +++VAWNAMI+ Y Q G   +A +LF +M +   V  W T++
Sbjct: 301 TKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLL 343



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 164/326 (50%), Gaps = 44/326 (13%)

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK-NGEMHLAS--KFFEAMEERDVV 203
           VA   + G+   A++   +   K   ++N +L+GY K +G + LA   + F+++   D V
Sbjct: 19  VAAAVRRGDLAGAEEAFASTQLKTTTTYNCLLAGYAKASGLIRLADARRLFDSIPHPDTV 78

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRN 263
           S+N +L  +    D+D A + F  +P ++V SW TM+SG ++NG   EA  +F  MP+RN
Sbjct: 79  SYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVRN 138

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEMPER-NPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
            V+WNAM+AA    G +  A  LF   PE+ + + WT M+ GY+    + +A      MP
Sbjct: 139 AVSWNAMVAALACSGDMGAAEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFFGAMP 198

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV-------------CWNV------- 362
            +N+ +  A+++GYV+N R D+A ++F  +    +V             C N+       
Sbjct: 199 VRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGR 258

Query: 363 --------------------MIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIR 402
                               ++  Y +CG +++A  +F +M  KDIV WN MI+GYAQ  
Sbjct: 259 QVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHG 318

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALIS 428
               A+K+FE+M        W  L++
Sbjct: 319 GGMQAIKLFEKMKDEGVVPDWITLLA 344



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 164/343 (47%), Gaps = 45/343 (13%)

Query: 178 LSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE---LDDLDSAWKFFQKIPEQNVV 234
           ++   + G++  A + F + + +   ++N +L GY +   L  L  A + F  IP  + V
Sbjct: 19  VAAAVRRGDLAGAEEAFASTQLKTTTTYNCLLAGYAKASGLIRLADARRLFDSIPHPDTV 78

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
           S+ T+LS +   G +  ARR+F  MP+++V +WN M++   + G  EEAA +F  MP RN
Sbjct: 79  SYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVRN 138

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ-TAMISGYVQNKRMDEANQIFDKIG 353
            VSW  M+        +  A  L    P K  A   TAM+SGY+    + +A + F  + 
Sbjct: 139 AVSWNAMVAALACSGDMGAAEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFFGAMP 198

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWN--------------------- 392
             ++V WN ++ GY +  R D+A+ +F+ MV   IV  N                     
Sbjct: 199 VRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGR 258

Query: 393 -------------------TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433
                              ++++ Y +   ++DA K+F+EM   ++ V+WNA+ISG+ Q+
Sbjct: 259 QVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMST-KDIVAWNAMISGYAQH 317

Query: 434 EFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ 476
              + A+K+F  M  EG   D  TL   L+AC H      G Q
Sbjct: 318 GGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQ 360



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 194/379 (51%), Gaps = 23/379 (6%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG---RVNDARKLFEQMPQRNLVSWNSM 83
           + G +  A + F+    K T TYN +++ YAK     R+ DAR+LF+ +P  + VS+N++
Sbjct: 24  RRGDLAGAEEAFASTQLKTTTTYNCLLAGYAKASGLIRLADARRLFDSIPHPDTVSYNTL 83

Query: 84  IAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACW 143
           ++ +     +  AR +F  M   D+ SW  M++  ++ G  E+A  +F ++P + +   W
Sbjct: 84  LSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVR-NAVSW 142

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSK-NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV 202
           NAMVA  A  G+   A+ L    P K + + W +M+SGY   G +  A +FF AM  R++
Sbjct: 143 NAMVAALACSGDMGAAEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNL 202

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV-----SWVTMLSGYARNGRMLEARRLFD 257
           VSWN ++ GYV+    D A + F+ + E ++V     +  ++L G +    +   R++  
Sbjct: 203 VSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQ 262

Query: 258 ---QMPI-RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDE 313
              ++P+ RNV    ++++ Y + G + +A ++F EM  ++ V+W  MI GY +     +
Sbjct: 263 WCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQ 322

Query: 314 ARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIG-----THDVVCWNVMI 364
           A +L ++M  + +        A+++  +     D   Q F+ +         +  ++ M+
Sbjct: 323 AIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDHYSCMV 382

Query: 365 KGYAQCGRMDEAINLFRQM 383
               + G ++ A+N+   M
Sbjct: 383 DLLCRAGLLERAVNMIHSM 401



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 161/315 (51%), Gaps = 20/315 (6%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL 88
           G ++ A ++FS M  K+  ++N+M+S  +KNG   +A  +F  MP RN VSWN+M+A   
Sbjct: 91  GDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVRNAVSWNAMVAALA 150

Query: 89  HNDKVKEARELF-DKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMV 147
            +  +  A +LF +   + D   W  M++ Y   G ++KA E F  +P + +   WNA+V
Sbjct: 151 CSGDMGAAEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVR-NLVSWNAVV 209

Query: 148 AGYAKIGNYNEAKKLLDAMPSKNIVSWN-----SMLSGYTKNGEMHLASKFFE-AME--- 198
           AGY K    ++A ++   M   +IV  N     S+L G +    +    +  +  M+   
Sbjct: 210 AGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPL 269

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
            R+V     +L  Y +  DL+ A K F ++  +++V+W  M+SGYA++G  ++A +LF++
Sbjct: 270 SRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEK 329

Query: 259 MPIRNVVA-WNAMIA---AYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVRIA 309
           M    VV  W  ++A   A +  G  +   + F  M E   +      ++ M+D   R  
Sbjct: 330 MKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDHYSCMVDLLCRAG 389

Query: 310 KLDEARRLLDQMPYK 324
            L+ A  ++  MP++
Sbjct: 390 LLERAVNMIHSMPFE 404



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 175/359 (48%), Gaps = 37/359 (10%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  ++ L K+G  EEA  +F  M  +N V++N+M++A A +G +  A  LF   P+
Sbjct: 108 VTSWNTMVSGLSKNGASEEAAAMFRIMPVRNAVSWNAMVAALACSGDMGAAEDLFRNAPE 167

Query: 75  R-NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDL 133
           + + + W +M++GY+    V++A E F  M   +L SW  ++  Y +    + A  +F  
Sbjct: 168 KTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKT 227

Query: 134 L-------PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNG 185
           +       PN    +      +  + +G   +  +    +P S+N+    S+LS Y K G
Sbjct: 228 MVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCG 287

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV-SWVTML---- 240
           +++ A K F+ M  +D+V+WN M+ GY +      A K F+K+ ++ VV  W+T+L    
Sbjct: 288 DLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLT 347

Query: 241 ----SGYARNG-----RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
               +G    G      M EA ++  Q     +  ++ M+    + G +E A  +   MP
Sbjct: 348 ACIHTGLCDFGIQCFETMQEAYKIEPQ-----IDHYSCMVDLLCRAGLLERAVNMIHSMP 402

Query: 292 -ERNPVSWTTMIDGYVRIAKLDE-----ARRLLDQMPYKNIAAQTAMISGY-VQNKRMD 343
            E +P ++ T++    R+ K  E     AR+L++Q P +N  A   + + Y V NK  D
Sbjct: 403 FEPHPSAYGTLLTA-CRVYKNLEFAEFAARKLIEQDP-QNAGAYVQLANIYAVANKWAD 459


>gi|115456537|ref|NP_001051869.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|41469627|gb|AAS07350.1| putative pentatricopeptide repeat domain contianing protein [Oryza
           sativa Japonica Group]
 gi|113550340|dbj|BAF13783.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|215686748|dbj|BAG89598.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 702

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 202/632 (31%), Positives = 333/632 (52%), Gaps = 51/632 (8%)

Query: 152 KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV----SWNL 207
           K G   +A  L D MP KN+V+W S++SGYT+NG    A   F  M E  V     + N 
Sbjct: 60  KSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNA 119

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVV--SWV--TMLSGYARNGRMLEARRLFDQMPIRN 263
            L    +L  L +  +             +W+   ++  Y+R G +  A+ +FD+M   +
Sbjct: 120 ALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPD 179

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLD 319
           VV + ++I+A+ + G+ E AA   I+M ++    N  + TT++    R+        L+ 
Sbjct: 180 VVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIK 239

Query: 320 QMPYKN--IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAI 377
           ++  ++  + + TA+I  Y +N     A  +FD +   +VV W  M++ Y + GR++EA+
Sbjct: 240 KIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEAL 299

Query: 378 NLFRQMVNK------------------------------------DIVTWNTMIAGYAQI 401
            +F  M+++                                    DI   N +++ Y + 
Sbjct: 300 QVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRT 359

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
             +++   +  ++ +  + VSW   IS   QN F   A+ +   M  EG   +    +  
Sbjct: 360 GLVEELEAMLNKI-ENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSV 418

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           LS+CA +A+L  G Q H LA+K G  +++  GN+LI MY+KCG++ +A L F      DV
Sbjct: 419 LSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDV 478

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC 581
            SWNSLI G+A +G+A +A+++F +M   G+ PD  TF+GVL  C+H G+V+ G   F  
Sbjct: 479 TSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRL 538

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIK 641
           M + Y+  P   HYACMID+L R GR DEA  M+  M  +P+A IW TLL +C++H+N+ 
Sbjct: 539 MIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLD 598

Query: 642 LGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVK 701
           +G++A ++L EL  + ++ Y L+SN++A  G W++  KVR  M+ +G +K  GCSWIE+ 
Sbjct: 599 IGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEIN 658

Query: 702 NQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           N++HTF S D     +  I   L  L A +++
Sbjct: 659 NEVHTFASRDMSHPNSDSIYQMLGELVAVMQD 690



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 151/613 (24%), Positives = 258/613 (42%), Gaps = 118/613 (19%)

Query: 20  KKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV- 78
           K++ +L KSGR+ +A+ +F +M +KN V + S++S Y +NGR   A  +F  M +  +  
Sbjct: 53  KRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAP 112

Query: 79  ------------------------------------SW--NSMIAGYLHNDKVKEARELF 100
                                               +W  + +I  Y     +  A+E+F
Sbjct: 113 NDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVF 172

Query: 101 DKMFRPDLFSWALMITCYTRKGELEKARELF------DLLPNKED-----TACWNAM--- 146
           D+M  PD+  +  +I+ + R GE E A E         L PN+       TAC   +   
Sbjct: 173 DRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQ 232

Query: 147 VAGY--AKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS 204
           + GY   KIG           + S+++ S  +++  Y++NGE  LA   F+++  ++VVS
Sbjct: 233 IHGYLIKKIG-----------LRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVS 281

Query: 205 WNLMLDGYVELDDLDSAWKFFQKI------PEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
           W  M+  Y+    L+ A + F  +      P +  +S V    G    GR L    +   
Sbjct: 282 WCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHD 341

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
           + I ++   NA+++ Y + G +EE   +  ++   + VSWTT I    +    ++A  LL
Sbjct: 342 L-ITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALL 400

Query: 319 DQMPYK----NIAAQTAMISGYVQNKRMDEANQIFD---KIGTHDVVC-WNVMIKGYAQC 370
            QM  +    N  A ++++S       +D+  Q      K+G    +C  N +I  Y++C
Sbjct: 401 CQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKC 460

Query: 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
           G+M  A   F  M   D+ +WN++I G+A   Q  DA K                     
Sbjct: 461 GQMGSARLAFDVMHTHDVTSWNSLIHGHA---QHGDANK--------------------- 496

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI-KSGYVND 489
                   AL++F  M   G K D ST    L  C H   ++ G     L I +  +   
Sbjct: 497 --------ALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPA 548

Query: 490 LFVGNSLITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
                 +I M  + GR   A  +  D   +P D + W +L+A   ++ N  +  KL  + 
Sbjct: 549 PSHYACMIDMLGRNGRFDEALRMINDMPFEP-DALIWKTLLASCKLHRN-LDIGKLAADR 606

Query: 548 VMEGVAPDPVTFI 560
           +ME    D  +++
Sbjct: 607 LMELSDRDSASYV 619



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 157/351 (44%), Gaps = 53/351 (15%)

Query: 5   LKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND 64
           +K IG +   V++    I    ++G  + A  +F  +  KN V++ SM+  Y ++GR+ +
Sbjct: 238 IKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEE 297

Query: 65  ARKLFEQM------P--------------------------QRNLVS----WNSMIAGYL 88
           A ++F  M      P                          + +L++     N++++ Y 
Sbjct: 298 ALQVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYG 357

Query: 89  HNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTA---CWNA 145
               V+E   + +K+  PDL SW   I+   + G  EKA  L   + ++  T     +++
Sbjct: 358 RTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSS 417

Query: 146 MVAGYAKIGNYNEAKKL----LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
           +++  A + + ++  +     L       I + N++++ Y+K G+M  A   F+ M   D
Sbjct: 418 VLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHD 477

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEA----R 253
           V SWN ++ G+ +  D + A + F K+    +     +++ +L G   +G + E     R
Sbjct: 478 VTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFR 537

Query: 254 RLFDQMPIRNVVA-WNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMI 302
            + DQ       + +  MI    + G+ +EA R+  +MP E + + W T++
Sbjct: 538 LMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLL 588


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 217/722 (30%), Positives = 368/722 (50%), Gaps = 64/722 (8%)

Query: 52  MISAYAKNGRVNDARKLFEQM-PQRNLVSWNSMIAGYLHNDKVKEA----RELFDKMFRP 106
           +IS YA+      +  +F  + P  N+  WNS+I    HN    +A     E+ +K  +P
Sbjct: 60  LISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQP 119

Query: 107 DLFSWALMITCYTRKGELEKA---RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           D F++  +I    R  +LE      E    +  + D    NA++  Y++  + + A+ + 
Sbjct: 120 DAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVF 179

Query: 164 DAMPSKNIVSWNSMLSGYTKNG----EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLD 219
           + M +++ VSWNS++SGY  NG     + +  KF       D  + + +L     L  + 
Sbjct: 180 EEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVK 239

Query: 220 SAWKFFQKIPEQNVVSWVT----MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
                   I +  +   V     +LS Y +  R+ EARR+F +M +++ V WN MI  Y 
Sbjct: 240 EGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYA 299

Query: 276 QRGQIEEAARLFIEMPE---RNPVSWTTMI-----DGYVRIAKLDEARRLLDQMPYKNIA 327
           Q G+ E + +LF++M +    + +S T+ I      G +++ K    + L+      +  
Sbjct: 300 QLGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQSGDLQVGKFVH-KYLIGSGFECDTV 358

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM---- 383
           A   +I  Y +   +  A ++FD     D V WN +I GY Q G   E +  F+ M    
Sbjct: 359 ACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER 418

Query: 384 -------------------------VNKDIVTW---------NTMIAGYAQIRQMDDAVK 409
                                    ++ D++ +         N+++  YA+  +MDD +K
Sbjct: 419 KPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLK 478

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           +F  M    + +SWN +I+  +  +      ++   M  EG   D +T+   L  C+ LA
Sbjct: 479 VFSYMSAH-DIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLA 537

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
             + G++IH    KSG+ +++ +GN+LI MY+KCG ++N   +FK     DV++W +LI+
Sbjct: 538 VRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALIS 597

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE 589
            + + G   +A+K F++M + GV PD V FI  + ACSH G+V  GL+ F+ M   Y +E
Sbjct: 598 AFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLE 657

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649
           P +EHYAC++DLL+R+G L +A E +  M +KP+A +WG LL ACR   N  + +   +K
Sbjct: 658 PRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKK 717

Query: 650 LSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLS 709
           + EL    T  Y L+SN++A  G+WD+V+ VR SM+  G +K+PG SWIE++ +++ F +
Sbjct: 718 ILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRT 777

Query: 710 GD 711
           GD
Sbjct: 778 GD 779



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 113/452 (25%), Positives = 203/452 (44%), Gaps = 65/452 (14%)

Query: 5   LKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND 64
           ++ IG  G  +   N  ++   K  R+ EA ++FS+M+ K++VT+N+MI  YA+ GR   
Sbjct: 248 IEKIGIAGDVIIG-NGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEA 306

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGEL 124
           + KLF             MI G                 F PD+ S    I    + G+L
Sbjct: 307 SVKLFMD-----------MIDG-----------------FVPDMLSITSTIRACGQSGDL 338

Query: 125 EKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
           +  + +   L       DT   N ++  YAK G+   A+++ D    K+ V+WNS+++GY
Sbjct: 339 QVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGY 398

Query: 182 TKNGEMHLASKFFEAME-ER--DVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVV 234
           T++G      + F+ M+ ER  D V++ L+L  + +L D++        +     E  ++
Sbjct: 399 TQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELI 458

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
              ++L  YA+ G M +  ++F  M   ++++WN +IA+ V         ++  EM    
Sbjct: 459 IGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEG 518

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
            +     + G + +  L   RR            Q   I GY           IF     
Sbjct: 519 LMPDEATVLGILPMCSLLAVRR------------QGKEIHGY-----------IFKSGFE 555

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            +V   N +I+ Y++CG ++  I +F+ M  KD+VTW  +I+ +    +   A+K F++M
Sbjct: 556 SNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDM 615

Query: 415 ---GKRRNTVSWNALISGFLQNEFHLDALKIF 443
              G   ++V++ A I     +    + L+ F
Sbjct: 616 ELSGVLPDSVAFIAFIFACSHSGMVKEGLRFF 647



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 87/185 (47%), Gaps = 15/185 (8%)

Query: 456 STLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD 515
           S+L   LS+  +   L   R +H L I SG    +     LI+ YA+     ++  +F+ 
Sbjct: 23  SSLLKTLSSAKNTPQL---RTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRS 79

Query: 516 ADPV-DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574
             P  +V  WNS+I     NG  T+A+  + EM  + + PD  TF  V+++C+ +  ++ 
Sbjct: 80  ISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLEL 139

Query: 575 GLKLFECMTEVYAIEPLVEHYA----CMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
           G     C+   +A+E   E        +ID+ SR   LD A  + + M  + +   W +L
Sbjct: 140 G-----CIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVS-WNSL 193

Query: 631 L-GAC 634
           + G C
Sbjct: 194 ISGYC 198


>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 639

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 206/664 (31%), Positives = 333/664 (50%), Gaps = 94/664 (14%)

Query: 74  QRNLVSWN--SMIAGYLHNDKVKEAR-ELFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
           QR LV  +  S+  G  H   V+E   +L       D  + + +I+ Y  +  L  +R +
Sbjct: 53  QRRLVEQHLASLPHGLQHLHHVQELHAQLLKHGLHLDPLAASKLISSYALQRRLPASRRI 112

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           F   PN + T                         +P       N++L  Y  N   H A
Sbjct: 113 FASFPNPQATTF-----------------------LP-------NTLLRAYALNALPHAA 142

Query: 191 SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRML 250
              F AM +RD  +++ ++        L S+       P + V S V  L          
Sbjct: 143 VSLFSAMPQRDSFTYSFLIKA------LSSS----GLTPLRAVHSHVVKLGS-------- 184

Query: 251 EARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAK 310
                     I +    NA+I AY + G   +A+++F EMP R+ VSW + +   VR  +
Sbjct: 185 ----------IEDTYVGNALIDAYSKNGGFLDASKVFEEMPRRDTVSWNSAMAAMVRQGE 234

Query: 311 LDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC 370
           +  ARR+ D+MP K                               D V WN ++ GY + 
Sbjct: 235 VASARRMFDEMPDK-------------------------------DTVSWNTVLDGYTKA 263

Query: 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
           G+M++A  LF+ M  +++V+W+T+++GY +   ++ A  IF++M   +N V+W  ++S  
Sbjct: 264 GKMEDAFELFQCMPERNVVSWSTVVSGYCKKGDIEMARVIFDKM-PTKNLVTWTIMVSAC 322

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
            QN    +A ++F  M +   + D + +   L+ACA   +L LG++IH            
Sbjct: 323 AQNGLVEEAGRLFTQMKEAAVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRST 382

Query: 491 FVGNSLITMYAKCGRIQNAELLF-KDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549
            V N++I M+ KCG +  A+ +F  +    D +SWN++I G+A++G+  +A+  F +M +
Sbjct: 383 HVCNAMIDMFCKCGCVNRADYVFDTEIAEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKL 442

Query: 550 EGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLD 609
           +G  PD VT I VLSAC+H+G V+ G + F  M   Y I P +EHY CMIDLL R G ++
Sbjct: 443 QGFRPDAVTMINVLSACTHMGFVEEGRQHFSNMERDYGIVPQIEHYGCMIDLLGRGGLIE 502

Query: 610 EAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHA 669
           EA  ++K M   PN  IWG+LL ACR+H+N++   IAV +LS+L+P     YA+LSN++A
Sbjct: 503 EAVGLIKSMPWDPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYA 562

Query: 670 EAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAA 729
           EAG+W ++ K R+ M+G+G+QK  G SWIE+    H F  GD K   + +I   +  L++
Sbjct: 563 EAGQWSDMAKARMQMKGTGSQKSAGSSWIELDEAFHEFTVGDRKHSDSDQISEMVDRLSS 622

Query: 730 QIRN 733
            +++
Sbjct: 623 HVKD 626



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 116/387 (29%), Positives = 204/387 (52%), Gaps = 17/387 (4%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSW--NSMIAGYLHNDKVKEARELFDK 102
           + +  + +IS+YA   R+  +R++F   P     ++  N+++  Y  N     A  LF  
Sbjct: 89  DPLAASKLISSYALQRRLPASRRIFASFPNPQATTFLPNTLLRAYALNALPHAAVSLFSA 148

Query: 103 MFRPDLFSWALMITCYTRKG--ELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
           M + D F+++ +I   +  G   L         L + EDT   NA++  Y+K G + +A 
Sbjct: 149 MPQRDSFTYSFLIKALSSSGLTPLRAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFLDAS 208

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
           K+ + MP ++ VSWNS ++   + GE+  A + F+ M ++D VSWN +LDGY +   ++ 
Sbjct: 209 KVFEEMPRRDTVSWNSAMAAMVRQGEVASARRMFDEMPDKDTVSWNTVLDGYTKAGKMED 268

Query: 221 AWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQI 280
           A++ FQ +PE+NVVSW T++SGY + G +  AR +FD+MP +N+V W  M++A  Q G +
Sbjct: 269 AFELFQCMPERNVVSWSTVVSGYCKKGDIEMARVIFDKMPTKNLVTWTIMVSACAQNGLV 328

Query: 281 EEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT----AM 332
           EEA RLF +M E     +  +  +++        L   +R+   +  + +   T    AM
Sbjct: 329 EEAGRLFTQMKEAAVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNAM 388

Query: 333 ISGYVQNKRMDEANQIFD-KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKD 387
           I  + +   ++ A+ +FD +I   D V WN +I G+A  G  D+A++ F QM       D
Sbjct: 389 IDMFCKCGCVNRADYVFDTEIAEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFRPD 448

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            VT   +++    +  +++  + F  M
Sbjct: 449 AVTMINVLSACTHMGFVEEGRQHFSNM 475



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 119/444 (26%), Positives = 200/444 (45%), Gaps = 81/444 (18%)

Query: 5   LKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTY--------------- 49
             S  N  +  F  N  +     +     A+ +FS M Q+++ TY               
Sbjct: 113 FASFPNPQATTFLPNTLLRAYALNALPHAAVSLFSAMPQRDSFTYSFLIKALSSSGLTPL 172

Query: 50  -------------------NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHN 90
                              N++I AY+KNG   DA K+FE+MP+R+ VSWNS +A  +  
Sbjct: 173 RAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFLDASKVFEEMPRRDTVSWNSAMAAMVRQ 232

Query: 91  DKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGY 150
            +V  AR +FD+M   D  SW  ++  YT+ G++E A ELF  +P + +   W+ +V+GY
Sbjct: 233 GEVASARRMFDEMPDKDTVSWNTVLDGYTKAGKMEDAFELFQCMPER-NVVSWSTVVSGY 291

Query: 151 AKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLD 210
            K G+   A+ + D MP+KN+V+W  M+S   +NG +  A + F  M+E           
Sbjct: 292 CKKGDIEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGRLFTQMKE----------- 340

Query: 211 GYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI----RNVVA 266
             VELD                V + V++L+  A +G +   +R+   +      R+   
Sbjct: 341 AAVELD----------------VAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHV 384

Query: 267 WNAMIAAYVQRGQIEEAARLF-IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
            NAMI  + + G +  A  +F  E+ E++ VSW T+I G+      D+A     QM  + 
Sbjct: 385 CNAMIDMFCKCGCVNRADYVFDTEIAEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQG 444

Query: 326 -----------IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMD 374
                      ++A T M  G+V+  R   +N   D      +  +  MI    + G ++
Sbjct: 445 FRPDAVTMINVLSACTHM--GFVEEGRQHFSNMERDYGIVPQIEHYGCMIDLLGRGGLIE 502

Query: 375 EAINLFRQMV-NKDIVTWNTMIAG 397
           EA+ L + M  + + V W ++++ 
Sbjct: 503 EAVGLIKSMPWDPNEVIWGSLLSA 526


>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  352 bits (903), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 186/509 (36%), Positives = 298/509 (58%), Gaps = 10/509 (1%)

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW 298
           ++  Y   GR +EAR++FD+M +RN+ +WN M+A Y + G +  A +LF  M E++ VSW
Sbjct: 104 LIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSW 163

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGY----VQNKRMDEANQIFDKIGT 354
            T++  Y +    +EA  L       ++       +G     V+ K +  A Q+  ++  
Sbjct: 164 NTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLV 223

Query: 355 ----HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKI 410
                ++V  + ++  YA+CG M  A  LF +M+ KDI  W T+++GYA+   M+ A ++
Sbjct: 224 AGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASEL 283

Query: 411 FEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAA 470
           F +M   +N VSW+ALISG+ +N    +AL  F  M + G   +  T +  L ACA +AA
Sbjct: 284 FHQM-PEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAA 342

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK-DADPVDVISWNSLIA 529
           L+ G+Q+H   I++ +  +  V +SLI MY+KCG ++ +  +F    +  DV+ WN++I+
Sbjct: 343 LKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMIS 402

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE 589
             A NG+  +A+++F +MV  G+ PD +TFI +LSACSH GLV  GL+ F+ MT  + + 
Sbjct: 403 ALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVF 462

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649
           P  EHY+C+IDLL RAG   E    ++ M  KP+  +W  LLG CR+H NI+LGR   E+
Sbjct: 463 PDQEHYSCLIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAER 522

Query: 650 LSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLS 709
           + EL+PQ ++ Y  L++++A  G+W+ VEKVR  M+    +K+ G SWI+V N+ H+F++
Sbjct: 523 VIELKPQSSAAYVSLASLYAFLGKWESVEKVRELMDEKFIRKERGISWIDVGNKTHSFIA 582

Query: 710 GDPKQCRTAEICNTLKTLAAQIRNTPLAV 738
            D       EI   L+ LA       L +
Sbjct: 583 SDRLHPLKEEIYLLLEQLARHTEEDFLTI 611



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 130/498 (26%), Positives = 223/498 (44%), Gaps = 71/498 (14%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           +  T+  N +I  Y + GR  +ARK+F++M  RNL SWN M+AGY     V  AR+LFD+
Sbjct: 95  RPTTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDR 154

Query: 103 MFRPDLFSWALMITCYTRKGELEKAREL---FDLLPNKEDTACWNAMVAGYAKIGNYNEA 159
           M   D+ SW  ++  Y ++G   +A  L   F  L    +   +  ++    K+     A
Sbjct: 155 MMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLA 214

Query: 160 K----KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
           K    ++L A    N+V  +S++  Y K GEM  A   F+ M  +D+ +W  ++ GY + 
Sbjct: 215 KQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKW 274

Query: 216 DDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
            D++SA + F ++PE+N VSW  ++SGYARN    EA   F +M                
Sbjct: 275 GDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKM---------------- 318

Query: 276 QRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR----LLDQMPYKNIAAQTA 331
                      F   PE+   ++++ +     IA L   ++    L+      N    ++
Sbjct: 319 ---------MKFGINPEQ--YTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSS 367

Query: 332 MISGYVQNKRMDEANQIFDKIGT-HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK---- 386
           +I  Y +   ++ +  +F  +G   DVV WN MI   AQ G  ++A+ +F  MV      
Sbjct: 368 LIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKP 427

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEM----GKRRNTVSWNALISGFLQNEFHLDALKI 442
           D +T+  +++  +    + + ++ F+ M    G   +   ++ LI         L     
Sbjct: 428 DRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYSCLID-------LLGRAGC 480

Query: 443 FVLMTQE----GKKADHSTLACALSACAHLAALQLGRQIHHLAIK------SGYVNDLFV 492
           FV +  E      K D    +  L  C     ++LGR++    I+      + YV     
Sbjct: 481 FVELVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYV----- 535

Query: 493 GNSLITMYAKCGRIQNAE 510
             SL ++YA  G+ ++ E
Sbjct: 536 --SLASLYAFLGKWESVE 551



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 175/372 (47%), Gaps = 51/372 (13%)

Query: 5   LKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND 64
           LK  G K       N  I    + GR  EA K+F +MS +N  ++N M++ YAK G VN+
Sbjct: 88  LKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNN 147

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL----FSWALMITCYTR 120
           ARKLF++M ++++VSWN+++  Y       EA  L+    R D+    FS+A ++    +
Sbjct: 148 ARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVK 207

Query: 121 KGELEKARELFD---LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSM 177
             EL+ A+++     +     +    +++V  YAK G    A+ L D M  K+I +W ++
Sbjct: 208 LKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTI 267

Query: 178 LSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI------PEQ 231
           +SGY K G+M+ AS+ F  M E++ VSW+ ++ GY        A  +F K+      PEQ
Sbjct: 268 VSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQ 327

Query: 232 ---------------------------------NVVSWVTMLSGYARNGRMLEARRLFDQ 258
                                            N +   +++  Y++ G +  +  +F  
Sbjct: 328 YTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHL 387

Query: 259 MPIR-NVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDE 313
           M  + +VV WN MI+A  Q G  E+A ++F +M E     + +++  ++        + E
Sbjct: 388 MGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQE 447

Query: 314 ARRLLDQMPYKN 325
             R    M Y +
Sbjct: 448 GLRFFKAMTYDH 459



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 1/116 (0%)

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIH-HLAIKSGYVNDLFVGNSL 496
           +AL     + Q G +         L  CA     + G+ +H HL           V N L
Sbjct: 45  EALSYLDRLAQRGVRLPTGIFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHL 104

Query: 497 ITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
           I MY +CGR   A  +F      ++ SWN ++AGYA  G+   A KLF+ M+ + V
Sbjct: 105 IGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDV 160



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 92/204 (45%), Gaps = 22/204 (10%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQK-NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL--- 77
           I    K G +E +  +F  M  K + V +N+MISA A+NG    A ++F  M +  L   
Sbjct: 369 IDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPD 428

Query: 78  -VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELF 131
            +++  +++   H+  V+E    F  M       PD   ++ +I    R G   +     
Sbjct: 429 RITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYSCLIDLLGRAGCFVELVNEL 488

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNE-----AKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           + +  K D   W+A++ G  +I N  E     A+++++  P  +  ++ S+ S Y   G+
Sbjct: 489 ENMSCKPDDRVWSALL-GVCRIHNNIELGRKVAERVIELKPQSS-AAYVSLASLYAFLGK 546

Query: 187 MHLASKFFEAMEERDV-----VSW 205
                K  E M+E+ +     +SW
Sbjct: 547 WESVEKVRELMDEKFIRKERGISW 570


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  352 bits (903), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 206/628 (32%), Positives = 344/628 (54%), Gaps = 38/628 (6%)

Query: 139 DTACWNAMVAGYAKIGNYNEAK---KLLDAMPSKNIVSWNSMLSGYTKNGEM-HLASKFF 194
           DT    ++++ YA   + +  +    L   +P   + S++S++  + ++    H+ + F 
Sbjct: 34  DTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSSLIHAFARSHHFPHVLTTFS 93

Query: 195 EAMEERDVVSWNLM------------LDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG 242
                R +    L+            LD   +L    +A  F   + +  V S +T +  
Sbjct: 94  HLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGF---LTDSIVASSLTHM-- 148

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSW 298
           Y +  R+L+AR+LFD+MP R+VV W+AMIA Y + G +EEA  LF EM     E N VSW
Sbjct: 149 YLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSW 208

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMIS------GYVQNKRMD---EANQIF 349
             M+ G+      DEA  +   M  +      + +S      G +++  +        I 
Sbjct: 209 NGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIK 268

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVK 409
             +G+   V  + M+  Y +CG + E   +F ++   +I + N  + G ++   +D A++
Sbjct: 269 QGLGSDKFVV-SAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALE 327

Query: 410 IFEEMGKRR---NTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
           +F +   ++   N V+W ++I+   QN   L+AL++F  M   G + +  T+   + AC 
Sbjct: 328 VFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACG 387

Query: 467 HLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNS 526
           +++AL  G++IH  +++ G  +D++VG++LI MYAKCGRIQ A   F     ++++SWN+
Sbjct: 388 NISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNA 447

Query: 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVY 586
           ++ GYA++G A E +++F  M+  G  PD VTF  VLSAC+  GL + G + +  M+E +
Sbjct: 448 VMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEH 507

Query: 587 AIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIA 646
            IEP +EHYAC++ LLSR G+L+EA+ ++K M  +P+A +WG LL +CR+H N+ LG IA
Sbjct: 508 GIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIA 567

Query: 647 VEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHT 706
            EKL  LEP     Y LLSN++A  G WDE  ++R  M+  G +K PG SWIEV +++H 
Sbjct: 568 AEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHKVHM 627

Query: 707 FLSGDPKQCRTAEICNTLKTLAAQIRNT 734
            L+GD    +  +I   L  L  Q++ +
Sbjct: 628 LLAGDQSHPQMKDILEKLDKLNMQMKKS 655



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 186/398 (46%), Gaps = 52/398 (13%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           +++  +S+   Y K  R+ DARKLF++MP R++V W++MIAGY     V+EA+ELF +M 
Sbjct: 138 DSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMR 197

Query: 104 ---FRPDLFSWALMITCYTRKGELEKARELFDLL------PNKEDTACWNAMVAGYAK-- 152
                P+L SW  M+  +   G  ++A  +F ++      P+    +C    V       
Sbjct: 198 SGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVV 257

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY 212
           +G       +   + S   V  ++ML  Y K G +   S+ F+ +EE ++ S N  L G 
Sbjct: 258 VGAQVHGYVIKQGLGSDKFVV-SAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGL 316

Query: 213 VELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN 268
                +D+A + F K  +Q    NVV+W ++++  ++NG+ LEA  LF  M    V    
Sbjct: 317 SRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGV---- 372

Query: 269 AMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL----LDQMPYK 324
                                  E N V+  ++I     I+ L   + +    L +  + 
Sbjct: 373 -----------------------EPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFD 409

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
           ++   +A+I  Y +  R+  A + FDK+   ++V WN ++KGYA  G+  E + +F  M+
Sbjct: 410 DVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMML 469

Query: 385 NK----DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRR 418
                 D+VT+  +++  AQ    ++  + +  M +  
Sbjct: 470 QSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEH 507



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 158/341 (46%), Gaps = 28/341 (8%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLF-- 69
           GS  F  +  +   GK G V+E  ++F ++ +    + N+ ++  ++NG V+ A ++F  
Sbjct: 272 GSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNK 331

Query: 70  --EQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGE 123
             +Q  + N+V+W S+IA    N K  EA ELF  M      P+  +   +I        
Sbjct: 332 FKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISA 391

Query: 124 LEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG 180
           L   +E+      +   +D    +A++  YAK G    A++  D M + N+VSWN+++ G
Sbjct: 392 LMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKG 451

Query: 181 YTKNGEMHLASKFFEAM----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS- 235
           Y  +G+     + F  M    ++ D+V++  +L    +    +  W+ +  + E++ +  
Sbjct: 452 YAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEP 511

Query: 236 ----WVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAY-----VQRGQIEEAAR 285
               +  +++  +R G++ EA  +  +MP   +   W A++++      +  G+I     
Sbjct: 512 KMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKL 571

Query: 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
            F+E    NP ++  + + Y      DE  R+ + M  K +
Sbjct: 572 FFLE--PTNPGNYILLSNIYASKGLWDEENRIREVMKSKGL 610


>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 186/509 (36%), Positives = 298/509 (58%), Gaps = 10/509 (1%)

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW 298
           ++  Y   GR +EAR++FD+M +RN+ +WN M+A Y + G +  A +LF  M E++ VSW
Sbjct: 104 LIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSW 163

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGY----VQNKRMDEANQIFDKIGT 354
            T++  Y +    +EA  L       ++       +G     V+ K +  A Q+  ++  
Sbjct: 164 NTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLV 223

Query: 355 ----HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKI 410
                ++V  + ++  Y++CG M  A  LF +M+ KDI  W T+++GYA+   M+ A ++
Sbjct: 224 AGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASEL 283

Query: 411 FEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAA 470
           F +M   +N VSW+ALISG+ +N    +AL  F  M + G   +  T +  L ACA +AA
Sbjct: 284 FHQM-PEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAA 342

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK-DADPVDVISWNSLIA 529
           L+ G+Q+H   I++ +  +  V +SLI MY+KCG ++ +  +F    +  DV+ WN++I+
Sbjct: 343 LKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMIS 402

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE 589
             A NG+  +A+++F +MV  G+ PD +TFI +LSACSH GLV  GL+ F+ MT  + + 
Sbjct: 403 ALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVF 462

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649
           P  EHYAC+IDLL RAG   E    ++ M  KP+  +W  LLG CR+H NI+LGR   E+
Sbjct: 463 PDQEHYACLIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAER 522

Query: 650 LSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLS 709
           + EL+PQ ++ Y  L++++A  G+W+ VEKVR  M+    +K+ G SWI+V N+ H+F++
Sbjct: 523 VIELKPQSSAAYVSLASLYAFLGKWESVEKVRELMDEKFIRKERGISWIDVGNKTHSFIA 582

Query: 710 GDPKQCRTAEICNTLKTLAAQIRNTPLAV 738
            D       EI   L+ LA       L +
Sbjct: 583 SDRLHPLKEEIYLLLEQLARHTEEDFLTI 611



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 185/388 (47%), Gaps = 43/388 (11%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           +  T+  N +I  Y + GR  +ARK+F++M  RNL SWN M+AGY     V  AR+LFD+
Sbjct: 95  RPTTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDR 154

Query: 103 MFRPDLFSWALMITCYTRKGELEKAREL---FDLLPNKEDTACWNAMVAGYAKIGNYNEA 159
           M   D+ SW  ++  Y ++G   +A  L   F  L    +   +  ++    K+     A
Sbjct: 155 MMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLA 214

Query: 160 KKL----LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
           K++    L A    N+V  +S++  Y+K GEM  A   F+ M  +D+ +W  ++ GY + 
Sbjct: 215 KQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKW 274

Query: 216 DDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
            D++SA + F ++PE+N VSW  ++SGYARN    EA   F +M                
Sbjct: 275 GDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKM---------------- 318

Query: 276 QRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR----LLDQMPYKNIAAQTA 331
                      F   PE+   ++++ +     IA L   ++    L+      N    ++
Sbjct: 319 ---------MKFGINPEQ--YTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSS 367

Query: 332 MISGYVQNKRMDEANQIFDKIGT-HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK---- 386
           +I  Y +   ++ +  +F  +G   DVV WN MI   AQ G  ++A+ +F  MV      
Sbjct: 368 LIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKP 427

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           D +T+  +++  +    + + ++ F+ M
Sbjct: 428 DRITFIVILSACSHSGLVQEGLRFFKAM 455



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 104/373 (27%), Positives = 172/373 (46%), Gaps = 53/373 (14%)

Query: 5   LKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND 64
           LK  G K       N  I    + GR  EA K+F +MS +N  ++N M++ YAK G VN+
Sbjct: 88  LKHTGFKRPTTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNN 147

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL----FSWA-LMITC-- 117
           ARKLF++M ++++VSWN+++  Y       EA  L+    R D+    FS+A ++I C  
Sbjct: 148 ARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVK 207

Query: 118 --------------------------------YTRKGELEKARELFDLLPNKEDTACWNA 145
                                           Y++ GE+  AR LFD +  K D   W  
Sbjct: 208 LKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVK-DIHAWTT 266

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW 205
           +V+GYAK G+ N A +L   MP KN VSW++++SGY +N   H A  +F  M +  +   
Sbjct: 267 IVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPE 326

Query: 206 NLMLDGYVELDDLDSAWKFFQKIP--------EQNVVSWVTMLSGYARNGRMLEARRLFD 257
                  +      +A K  +++           N +   +++  Y++ G +  +  +F 
Sbjct: 327 QYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFH 386

Query: 258 QMPIR-NVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLD 312
            M  + +VV WN MI+A  Q G  E+A ++F +M E     + +++  ++        + 
Sbjct: 387 LMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQ 446

Query: 313 EARRLLDQMPYKN 325
           E  R    M Y +
Sbjct: 447 EGLRFFKAMTYDH 459



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 151/312 (48%), Gaps = 49/312 (15%)

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
           N +I  Y +CGR  EA  +F +M  +++ +WN M+AGYA++  +++A K+F+ M   ++ 
Sbjct: 102 NHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRM-MEKDV 160

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
           VSWN ++  + +     +A+ ++    +     +  + A  L  C  L  LQL +Q+H  
Sbjct: 161 VSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQ 220

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV------------------- 521
            + +G++++L + +S++  Y+KCG ++ A  LF +    D+                   
Sbjct: 221 VLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSA 280

Query: 522 ------------ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
                       +SW++LI+GYA N    EA+  F +M+  G+ P+  TF   L AC+ +
Sbjct: 281 SELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASI 340

Query: 570 GLVDGGLKL--------FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIK 621
             +  G ++        F C T V          + +ID+ S+ G L+ +  +   M  K
Sbjct: 341 AALKHGKQVHGYLIRTYFRCNTIV---------VSSLIDMYSKCGMLEASCCVFHLMGNK 391

Query: 622 PNAGIWGTLLGA 633
            +  +W T++ A
Sbjct: 392 QDVVVWNTMISA 403



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 1/116 (0%)

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIH-HLAIKSGYVNDLFVGNSL 496
           +AL     + Q G +         L  CA     + G+ +H HL           V N L
Sbjct: 45  EALSYLDRLAQRGIRLPTGIFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHL 104

Query: 497 ITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
           I MY +CGR   A  +F      ++ SWN ++AGYA  G+   A KLF+ M+ + V
Sbjct: 105 IGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDV 160



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 22/204 (10%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQK-NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL--- 77
           I    K G +E +  +F  M  K + V +N+MISA A+NG    A ++F  M +  L   
Sbjct: 369 IDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPD 428

Query: 78  -VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELF 131
            +++  +++   H+  V+E    F  M       PD   +A +I    R G   +     
Sbjct: 429 RITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYACLIDLLGRAGCFVELVNEL 488

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNE-----AKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           + +  K D   W+A++ G  +I N  E     A+++++  P  +  ++ S+ S Y   G+
Sbjct: 489 ENMSCKPDDRVWSALL-GVCRIHNNIELGRKVAERVIELKPQSS-AAYVSLASLYAFLGK 546

Query: 187 MHLASKFFEAMEERDV-----VSW 205
                K  E M+E+ +     +SW
Sbjct: 547 WESVEKVRELMDEKFIRKERGISW 570


>gi|77552605|gb|ABA95402.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 1000

 Score =  352 bits (902), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 223/753 (29%), Positives = 374/753 (49%), Gaps = 68/753 (9%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           N     +++  Y   G V+DA++LF +MP+RN+VSW +++     N  ++EA   + +M 
Sbjct: 78  NVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMR 137

Query: 105 RPDLFSWA-LMITCYTRKGELEK--------ARELFDLLPNKEDTACWNAMVAGYAKIGN 155
           R  +   A    T  +  G LE         ++ +   L N+   A  N+++  +  +G 
Sbjct: 138 RDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVA--NSLITMFGNLGR 195

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDG 211
            ++A+KL D M   + +SWN+M+S Y+  G        F  M       D  +   ++  
Sbjct: 196 VHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSV 255

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSG----YARNGRMLEARRLFDQMPIRNVVAW 267
               D               ++ S VT+++     Y+  G++ +A  LF  M  R++++W
Sbjct: 256 CASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISW 315

Query: 268 NAMIAAYVQRGQIEEA----ARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL----LD 319
           N MI++YVQ     +A     +LF      N +++++ +        L + + +    L 
Sbjct: 316 NTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQ 375

Query: 320 QMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
               +N+    ++I+ Y +   M++A ++F  + THD+V +NV+I GYA      +A+ +
Sbjct: 376 LSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQV 435

Query: 380 FR------------QMVN----------------------------KDIVTWNTMIAGYA 399
           F              M+N                             D    N++I  YA
Sbjct: 436 FSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYA 495

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
           +   ++ +  IF  +   +N VSWNA+I+  +Q     +ALK+F+ M   G K D   LA
Sbjct: 496 KCGNLESSTNIFNSI-TNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLA 554

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
             LS+CA LA+L+ G Q+H L +KSG  +D +V N+ + MY KCG++     +  D    
Sbjct: 555 ECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIR 614

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
               WN+LI+GYA  G   EA + F++MV  G  PD VTF+ +LSACSH GLVD G+  +
Sbjct: 615 PQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLVDKGIDYY 674

Query: 580 ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
             M   + + P ++H  C++DLL R GR  EA + ++ M + PN  IW +LL + R H+N
Sbjct: 675 NSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLIWRSLLSSSRTHKN 734

Query: 640 IKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
           +++GR   +KL EL+P   S Y LLSN++A   RW +V+K+R  M+     K+P CSW++
Sbjct: 735 LEIGRKTAKKLLELDPFDDSAYVLLSNLYATNARWADVDKLRSHMKTININKRPACSWLK 794

Query: 700 VKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +KN++ TF  GD       +I   L  +  ++R
Sbjct: 795 LKNEVSTFGIGDRGHKHAEKIYAKLDEMLLKLR 827



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 120/499 (24%), Positives = 204/499 (40%), Gaps = 108/499 (21%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  IT  G  GRV +A K+F +M + +T+++N+MIS Y+  G  +    +F  M    L 
Sbjct: 184 NSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLR 243

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITC----YTRKGELEKAREL 130
               +  S+++    +D       +     R  L S   +I      Y+  G+L  A  L
Sbjct: 244 PDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFL 303

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------PS---------------- 168
           F  + ++ D   WN M++ Y +  N  +A K L  +      P+                
Sbjct: 304 FWNM-SRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGA 362

Query: 169 -----------------KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
                            +N++  NS+++ Y K   M  A K F++M   D+VS+N+++ G
Sbjct: 363 LIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGG 422

Query: 212 YVELDDLDSAWKFFQKIPEQNV-VSWVTM------------------------------- 239
           Y  L+D   A + F  +    +  +++TM                               
Sbjct: 423 YAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLS 482

Query: 240 --------LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
                   ++ YA+ G +  +  +F+ +  +N+V+WNA+IAA VQ G  EEA +LFI+M 
Sbjct: 483 DEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQ 542

Query: 292 ER----NPVSWTTMIDGYVRIAKLDEARRL--------LDQMPYKNIAAQTAMISGYVQN 339
                 + V     +     +A L+E  +L        LD   Y       A +  Y + 
Sbjct: 543 HAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSY----VVNAAMDMYGKC 598

Query: 340 KRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV----NKDIVTWNTMI 395
            +MDE  Q+          CWN +I GYA+ G   EA   F+QMV      D VT+  ++
Sbjct: 599 GKMDEMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALL 658

Query: 396 AGYAQIRQMDDAVKIFEEM 414
           +  +    +D  +  +  M
Sbjct: 659 SACSHAGLVDKGIDYYNSM 677



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 153/367 (41%), Gaps = 83/367 (22%)

Query: 290 MPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK------------------------- 324
           M +R P +W T + G VR  +   A  +L  M  +                         
Sbjct: 1   MADRTPSTWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRGRDEGI 60

Query: 325 -----------------NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367
                            N+   TA++  Y     + +A ++F ++   +VV W  ++   
Sbjct: 61  ACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVAL 120

Query: 368 AQCGRMDEAINLFRQM---------------------------------------VNKDI 388
           +  G ++EA+  +RQM                                       +   +
Sbjct: 121 SSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQV 180

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
              N++I  +  + ++ DA K+F+ M +  +T+SWNA+IS +           +F  M  
Sbjct: 181 SVANSLITMFGNLGRVHDAEKLFDRM-EEHDTISWNAMISMYSHQGICSKCFLVFSDMRH 239

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
            G + D +TL   +S CA       G  IH L ++S   + + V N+L+ MY+  G++ +
Sbjct: 240 HGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSD 299

Query: 509 AELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
           AE LF +    D+ISWN++I+ Y  N N+T+A+K   ++     +P+ +TF   L ACS 
Sbjct: 300 AEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSS 359

Query: 569 VG-LVDG 574
            G L+DG
Sbjct: 360 PGALIDG 366



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 67/300 (22%), Positives = 128/300 (42%), Gaps = 41/300 (13%)

Query: 418 RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA---ALQLG 474
           R   +W   +SG ++      A ++   M + G       LA  ++AC        +  G
Sbjct: 4   RTPSTWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRGRDEGIACG 63

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
             IH L  ++G + ++++G +L+ +Y   G + +A+ LF +    +V+SW +L+   + N
Sbjct: 64  AAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSN 123

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC----------------------SHVGLV 572
           G   EA++ + +M  +GV  +   F  V+S C                      + V + 
Sbjct: 124 GYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVA 183

Query: 573 DGGLKLFECMTEVYAIEPLV----EH----YACMIDLLSRAGRLDEAFEMVKGMK---IK 621
           +  + +F  +  V+  E L     EH    +  MI + S  G   + F +   M+   ++
Sbjct: 184 NSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLR 243

Query: 622 PNAGIWGTLLGACRMHQNIKLGRIAVEKL---SELEPQKTSCYALLSNMHAEAGRWDEVE 678
           P+A    +L+  C    +   G   +  L   S L+   T   AL+ NM++ AG+  + E
Sbjct: 244 PDATTLCSLMSVCASSDHFSHGS-GIHSLCLRSSLDSSVTVINALV-NMYSAAGKLSDAE 301



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 69/328 (21%), Positives = 142/328 (43%), Gaps = 41/328 (12%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR--- 75
           N  IT   K G +E +  IF+ ++ KN V++N++I+A  + G   +A KLF  M      
Sbjct: 488 NSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNK 547

Query: 76  -NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMI-TCYTRKGELEKARELFDL 133
            + V     ++       ++E  +L     +  L S + ++       G+  K  E+  +
Sbjct: 548 LDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQV 607

Query: 134 LPNK--EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSMLSGYTKNGEM 187
           +P++      CWN +++GYAK G + EA++    M +     + V++ ++LS  +  G +
Sbjct: 608 VPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLV 667

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
                ++ +M     VS  +                       ++ V  V +L    R G
Sbjct: 668 DKGIDYYNSMASSFGVSPGI-----------------------KHCVCIVDLL---GRLG 701

Query: 248 RMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQIE---EAARLFIEMPERNPVSWTTMID 303
           R  EA +  ++MP+  N + W +++++      +E   + A+  +E+   +  ++  + +
Sbjct: 702 RFAEAEKFIEEMPVLPNDLIWRSLLSSSRTHKNLEIGRKTAKKLLELDPFDDSAYVLLSN 761

Query: 304 GYVRIAKLDEARRLLDQMPYKNIAAQTA 331
            Y   A+  +  +L   M   NI  + A
Sbjct: 762 LYATNARWADVDKLRSHMKTININKRPA 789


>gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial-like [Vitis vinifera]
          Length = 685

 Score =  352 bits (902), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 200/638 (31%), Positives = 334/638 (52%), Gaps = 56/638 (8%)

Query: 114 MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS 173
           ++  Y+R   + +A++LF+ +P K +   WN M+ GY K G+  ++ +L D+MP K+  S
Sbjct: 48  LLQMYSRCNSMREAQQLFEEMP-KRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFS 106

Query: 174 WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI---PE 230
           WN ++SG+ K G + +A + F  M  ++ ++WN M+ GY        A   F+ +   P 
Sbjct: 107 WNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPL 166

Query: 231 Q----------NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQI 280
           +           VV   T L G    G+ + AR + D++   +V+  ++++  Y + G I
Sbjct: 167 ERFCGDTFVLATVVGACTNL-GALDCGKQIHARIVVDEVEFDSVLG-SSLVNLYGKCGDI 224

Query: 281 EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340
           + A  +   M E +  S + +I GY    ++++ARR+        +    +MISGYV N 
Sbjct: 225 DSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANN 284

Query: 341 RMDEANQIFD--------------------------------------KIG-THDVVCWN 361
              EA ++F+                                      K+G T+D++  +
Sbjct: 285 EALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDS 344

Query: 362 VMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
            ++  Y++C R D+A  LF  +   D +  N+MI  Y+   ++DDA +IF+ M   ++ +
Sbjct: 345 ALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTM-PSKSLI 403

Query: 422 SWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLA 481
           SWN++I GF QN   ++AL +F  M + G + D  +LA  +SACA +++L+LG QI   A
Sbjct: 404 SWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARA 463

Query: 482 IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
              G   D  +  SL+  Y KCG +++   LF      D + WNS++ GYA NG+  EA+
Sbjct: 464 TIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEAL 523

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601
            +F++M   GV P  +TF+GVLSAC H GLV+ G K F  M   Y I P +EHY+CM+DL
Sbjct: 524 NVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDL 583

Query: 602 LSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCY 661
            +RAG L++A  +++ M +K +  +W ++L  C  H N  LG+   +++ +L+P+ +  Y
Sbjct: 584 YARAGLLEDAMNLIEQMPLKADTSMWSSVLRGCVAHGNNILGKKVAKRIIDLDPENSGAY 643

Query: 662 ALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
             LS ++A    W    +VR  M      K PGCSW +
Sbjct: 644 VQLSGIYATFEDWGRSAQVRKLMYDKKIPKVPGCSWAD 681



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 138/590 (23%), Positives = 270/590 (45%), Gaps = 62/590 (10%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N+ +    +   + EA ++F +M ++N  ++N+MI  Y K+G    + +LF+ MP ++  
Sbjct: 46  NRLLQMYSRCNSMREAQQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAF 105

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF-DLLPNK 137
           SWN +I+G+     ++ AR LF++M   +  +W  MI  Y   G  ++A  LF DL  N 
Sbjct: 106 SWNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNP 165

Query: 138 EDTACWNAMV----------AGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
            +  C +  V           G    G    A+ ++D +   +++  +S+++ Y K G++
Sbjct: 166 LERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLG-SSLVNLYGKCGDI 224

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
             A+     M+E D  S + ++ GY     ++ A + F       VV W +M+SGY  N 
Sbjct: 225 DSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANN 284

Query: 248 RMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPE----RNPVSWT 299
             LEA  LF+ M  + V      + ++++A    G I++  ++   + +     + +  +
Sbjct: 285 EALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDS 344

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
            ++D Y +  + D+A +L   +   +     +MI+ Y    R+D+A QIFD + +  ++ 
Sbjct: 345 ALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLIS 404

Query: 360 WNVMIKGYAQCGRMDEAINLFRQM------------------------------------ 383
           WN MI G++Q     EA++LF +M                                    
Sbjct: 405 WNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARAT 464

Query: 384 ---VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
              +  D +   +++  Y +   ++   K+F+ M K  + V WN+++ G+  N   ++AL
Sbjct: 465 IIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRMMK-SDEVPWNSMLMGYATNGHGIEAL 523

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS-LITM 499
            +F  M   G +    T    LSAC H   ++ GR+  +      ++N      S ++ +
Sbjct: 524 NVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDL 583

Query: 500 YAKCGRIQNAELLFKDAD-PVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           YA+ G +++A  L +      D   W+S++ G   +GN     K+ + ++
Sbjct: 584 YARAGLLEDAMNLIEQMPLKADTSMWSSVLRGCVAHGNNILGKKVAKRII 633



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 145/295 (49%), Gaps = 20/295 (6%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K  R ++A K+FS +   +T+  NSMI+ Y+  GR++DAR++F+ MP ++L+SWNSMI G
Sbjct: 352 KCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVG 411

Query: 87  YLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELF---DLLPNKED 139
           +  N    EA +LF +M     R D FS A +I+       LE   ++F    ++  + D
Sbjct: 412 FSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFD 471

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE 199
                ++V  Y K G     +KL D M   + V WNSML GY  NG    A   F+ M  
Sbjct: 472 QIISTSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRS 531

Query: 200 RDVVSWNLMLDGYVELDD----LDSAWKFFQKIP-----EQNVVSWVTMLSGYARNGRML 250
             V   ++   G +   D    ++   K+F  +         +  +  M+  YAR G + 
Sbjct: 532 VGVQPTDITFVGVLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDLYARAGLLE 591

Query: 251 EARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTTM 301
           +A  L +QMP++ +   W++++   V  G     ++ A+  I++   N  ++  +
Sbjct: 592 DAMNLIEQMPLKADTSMWSSVLRGCVAHGNNILGKKVAKRIIDLDPENSGAYVQL 646



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 117/257 (45%), Gaps = 45/257 (17%)

Query: 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
           GR+   + L   +++  +   N ++  Y++   M +A ++FEEM K RN  SWN +I G+
Sbjct: 25  GRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEEMPK-RNCFSWNTMIEGY 83

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
           L++     +L++F  M  +                                       D 
Sbjct: 84  LKSGSKGKSLELFDSMPHK---------------------------------------DA 104

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV-- 548
           F  N +I+ +AK G ++ A  LF +    + I+WNS+I GYA NG   EA+ LF+++   
Sbjct: 105 FSWNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLN 164

Query: 549 -MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGR 607
            +E    D      V+ AC+++G +D G K       V  +E      + +++L  + G 
Sbjct: 165 PLERFCGDTFVLATVVGACTNLGALDCG-KQIHARIVVDEVEFDSVLGSSLVNLYGKCGD 223

Query: 608 LDEAFEMVKGMKIKPNA 624
           +D A  ++  MK +P+A
Sbjct: 224 IDSANHVLNLMK-EPDA 239



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 116/241 (48%), Gaps = 29/241 (12%)

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND-LFVGNSLITMYAKCGRIQNAELL 512
           D  +LA  L +C +  ++  GR +H L +KSG ++  L +GN L+ MY++C  ++ A+ L
Sbjct: 5   DLHSLARQLGSCNNYGSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQL 64

Query: 513 FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
           F++    +  SWN++I GY  +G+  ++++LF+ M  +    D  ++  V+S  +  G +
Sbjct: 65  FEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHK----DAFSWNVVISGFAKEGNL 120

Query: 573 DGGLKLFECMTEVYAI--EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKP------NA 624
           +   +LF  M     I    ++  YAC        GR  EA  + K + + P      + 
Sbjct: 121 EVARRLFNEMPWKNGIAWNSMIHGYAC-------NGRPKEAVGLFKDLSLNPLERFCGDT 173

Query: 625 GIWGTLLGACRMHQNIKLG-----RIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEK 679
            +  T++GAC     +  G     RI V+++       +S    L N++ + G  D    
Sbjct: 174 FVLATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSS----LVNLYGKCGDIDSANH 229

Query: 680 V 680
           V
Sbjct: 230 V 230


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 209/663 (31%), Positives = 347/663 (52%), Gaps = 54/663 (8%)

Query: 123 ELEKARELFDLLPNKEDTACW--NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG 180
           +LE  R++ D +        +  N +V  Y K G+   A+   DA+  KN  SW SML+ 
Sbjct: 39  DLESVRQIHDRISGAASANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTA 98

Query: 181 YTKNGEMHLASKFFEAME-ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-----EQNVV 234
           Y +NG    A   ++ M+ + + V +  +L     +  L+       +I      + +V+
Sbjct: 99  YAQNGHYRAALDLYKRMDLQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVI 158

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-ER 293
              ++L+ YA+ G + +A+RLF++M  R+V +WNAMIAAY Q G  EEA RL+ +M  E 
Sbjct: 159 LENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVEP 218

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYK----NIAAQTAMISGYVQNKRMDEANQIF 349
           +  ++T+++     +  LD+ R++   +  +    +++ Q A+++ Y + K +D+A +IF
Sbjct: 219 SVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIF 278

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMI---------- 395
            ++   DVV W+ MI  +A+    DEAI  + +M    V  +  T+ +++          
Sbjct: 279 QRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLR 338

Query: 396 AG-------------------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
           AG                         Y     +D+A  +F+++  R   + W  LI G+
Sbjct: 339 AGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGL-WTVLIGGY 397

Query: 431 LQNEFHLDALKIFVLMTQEGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND 489
            +       L+++  M    K  A     +C +SACA L A    RQ H      G ++D
Sbjct: 398 SKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISD 457

Query: 490 LFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549
             +  SL+ MY++ G +++A  +F      D ++W +LIAGYA +G    A+ L++EM +
Sbjct: 458 FVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMEL 517

Query: 550 EGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLD 609
           EG  P  +TF+ VL ACSH GL + G +LF  +   YA+ P + HY+C+IDLLSRAGRL 
Sbjct: 518 EGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLS 577

Query: 610 EAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHA 669
           +A E++  M ++PN   W +LLGA R+H+++K    A  ++++L+P   + Y LLSN+HA
Sbjct: 578 DAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHA 637

Query: 670 EAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAA 729
             G    +  VR +M   G +K+ G SWIEV +QIH F  GD    R  EI   L+ L+ 
Sbjct: 638 VTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSP 697

Query: 730 QIR 732
           +I+
Sbjct: 698 KIK 700



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 144/586 (24%), Positives = 274/586 (46%), Gaps = 68/586 (11%)

Query: 38  FSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEAR 97
            S  +  N    N ++ AY K G V  AR  F+ + ++N  SW SM+  Y  N   + A 
Sbjct: 50  ISGAASANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAAL 109

Query: 98  ELFDKM-FRPDLFSWALMITCYTRKGELEKARELFDLLPN----KEDTACWNAMVAGYAK 152
           +L+ +M  +P+   +  ++        LE+ + +   +      K D    N+++  YAK
Sbjct: 110 DLYKRMDLQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAK 169

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME-ERDVVSWNLMLDG 211
            G+  +AK+L + M  +++ SWN+M++ Y ++G    A + +E M+ E  V ++  +L  
Sbjct: 170 CGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVEPSVRTFTSVLSA 229

Query: 212 YVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
              L  LD   K    I     E ++     +L+ YAR   + +A ++F ++P R+VV+W
Sbjct: 230 CSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSW 289

Query: 268 NAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQM-- 321
           +AMIAA+ +    +EA   + +M       N  ++ +++     +  L   R + DQ+  
Sbjct: 290 SAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILG 349

Query: 322 -PYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
             YK  +   TA++  Y     +DEA  +FD+I   D   W V+I GY++ G     + L
Sbjct: 350 NGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLEL 409

Query: 380 FRQMVN----------------------------------------KDIVTWNTMIAGYA 399
           +R+M N                                         D V   +++  Y+
Sbjct: 410 YREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYS 469

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
           +   ++ A ++F++M   R+T++W  LI+G+ ++  H  AL ++  M  EG +    T  
Sbjct: 470 RWGNLESARQVFDKMSS-RDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFM 528

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN--SLITMYAKCGRIQNAELLFKDAD 517
             L AC+H    + G+Q+  ++I+S Y     + +   +I + ++ GR+ +AE L  +A 
Sbjct: 529 VVLYACSHAGLQEQGKQL-FISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELI-NAM 586

Query: 518 PVDV--ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP-DPVTFI 560
           PV+   ++W+SL+    I+ +   A     ++    + P DP +++
Sbjct: 587 PVEPNDVTWSSLLGASRIHKDVKRATHAAGQITK--LDPVDPASYV 630



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 191/379 (50%), Gaps = 26/379 (6%)

Query: 31  VEEAIKIFSQMS-----QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIA 85
           +EE   I S++S     + + +  NS+++ YAK G + DA++LFE+M  R++ SWN+MIA
Sbjct: 137 LEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIA 196

Query: 86  GYLHNDKVKEARELFDKM-FRPDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTA 141
            Y  +   +EA  L++ M   P + ++  +++  +  G L++ R++  L+ ++    D +
Sbjct: 197 AYAQSGHFEEAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLS 256

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
             NA++  YA+    ++A K+   +P +++VSW++M++ + +      A +F+  M+   
Sbjct: 257 LQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEG 316

Query: 202 V----VSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSGYARNGRMLEAR 253
           V     ++  +L     + DL +      +I     +  +V+   ++  Y   G + EAR
Sbjct: 317 VRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEAR 376

Query: 254 RLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVRI 308
            LFDQ+  R+   W  +I  Y ++G       L+ EM     V      ++ +I     +
Sbjct: 377 SLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASL 436

Query: 309 AKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMI 364
               +AR+    +    + +     T++++ Y +   ++ A Q+FDK+ + D + W  +I
Sbjct: 437 GAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLI 496

Query: 365 KGYAQCGRMDEAINLFRQM 383
            GYA+ G    A+ L+++M
Sbjct: 497 AGYAKHGEHGLALGLYKEM 515


>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  351 bits (901), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 184/503 (36%), Positives = 288/503 (57%), Gaps = 10/503 (1%)

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS- 297
           +L  Y+R G    A ++FD++   N   W ++I  YV+  Q +EA  LFI+M  R P+S 
Sbjct: 41  LLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQM-RREPISV 99

Query: 298 ----WTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIF 349
                ++++    R+ +    + +     D+M  K+I +   MISGY  N R+D A + F
Sbjct: 100 LNFTISSVLKALARLTRFKGGQAVYGFAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFF 159

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVK 409
           D++   +VV W  MI GY + G M EA  LF  M  KD+ +WN M++GY  I    +  +
Sbjct: 160 DRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDYTNGAR 219

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
              +    +N V+W+ +I G+ +N   L AL++F    ++  K D + +   +SAC+ L 
Sbjct: 220 CLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLG 279

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
            +     I H  +    ++DL V  SLI MYAKCG I+ A  +F+ A P D++ ++++IA
Sbjct: 280 IIDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIA 339

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE 589
             A +G   +AI LF++M    + PD VTF+GVL+AC+H GLVD G K F+ MTE + I+
Sbjct: 340 ALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQ 399

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649
           P  +HYAC++DLL R G L+EA+ +++ M I P++ +WG LL ACR+H N++L  +A  +
Sbjct: 400 PSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAACRVHCNVQLAEVAAAE 459

Query: 650 LSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLS 709
           L ++EP  +  Y LLSN++A AGRW  V KVR  +     +K  G SWIE+ + +H F+ 
Sbjct: 460 LFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRVRKNRGSSWIELSHVVHEFVM 519

Query: 710 GDPKQCRTAEICNTLKTLAAQIR 732
           GD     +  I   L  L   ++
Sbjct: 520 GDMSHTDSDSISLILYLLCEDMK 542



 Score =  185 bits (469), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 123/419 (29%), Positives = 210/419 (50%), Gaps = 28/419 (6%)

Query: 81  NSMIAGYLHNDKVKE------ARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           N  I   +HN K  +      AR L +       F    ++  Y+R G  + A ++FD +
Sbjct: 2   NPPILHIIHNCKTLKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEI 61

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK--------NGE 186
             + +   W +++ GY +   Y+EA  L   M  + I   N  +S   K         G 
Sbjct: 62  -TQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGG 120

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARN 246
             +    F+ M E+D+VSWN+M+ GY   D +D A KFF ++PE+NVVSW +M+ GY + 
Sbjct: 121 QAVYGFAFDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKA 180

Query: 247 GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAAR-LFIEMPERNPVSWTTMIDGY 305
           G M EA+ LFD MP++++ +WN M++ Y+  G     AR LF +MP +N V+W+TMI GY
Sbjct: 181 GDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDYTNGARCLFDQMPMKNLVTWSTMIGGY 240

Query: 306 VRIAKLDEARRLLDQMPYKNIAAQTAMISGYV----QNKRMDEANQIF-DKIGT---HDV 357
            R  +  +A  L ++   ++I      I G +    Q   +D A  I  + +G     D+
Sbjct: 241 ARNGQPLKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDL 300

Query: 358 VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK- 416
             +  +I  YA+CG +++A+ +F     KD++ ++TMIA  A      DA+ +F++M + 
Sbjct: 301 RVFTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRA 360

Query: 417 --RRNTVSWNALISGFLQNEFHLDALKIFVLMTQE-GKKADHSTLACALSACAHLAALQ 472
             + ++V++  +++         +  K F  MT+E G +      AC +     +  L+
Sbjct: 361 NIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLE 419



 Score =  169 bits (428), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 193/381 (50%), Gaps = 43/381 (11%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL- 108
           N ++  Y++ G  + A K+F+++ Q N   W S+I GY+ N +  EA  LF +M R  + 
Sbjct: 39  NKLLRLYSRFGATDYAHKVFDEITQPNAYLWTSLIHGYVENRQYDEAFSLFIQMRREPIS 98

Query: 109 ---FSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL 162
              F+ + ++    R    +  + ++    +   ++D   WN M++GY      + A+K 
Sbjct: 99  VLNFTISSVLKALARLTRFKGGQAVYGFAFDEMCEKDIVSWNMMISGYGNNDRVDIARKF 158

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDL-DSA 221
            D MP +N+VSW SM+ GY K G+M  A   F++M  +D+ SWN+M+ GY+++ D  + A
Sbjct: 159 FDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDYTNGA 218

Query: 222 WKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQR 277
              F ++P +N+V+W TM+ GYARNG+ L+A  LF++   +++         +I+A  Q 
Sbjct: 219 RCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIISACSQL 278

Query: 278 GQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYV 337
           G I+ A                ++I  YV  + L + R              T++I  Y 
Sbjct: 279 GIIDAA---------------ESIIHNYVGPSLLSDLRVF------------TSLIDMYA 311

Query: 338 QNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNT 393
           +   +++A Q+F+     D++C++ MI   A  G   +AI LF +M    +  D VT+  
Sbjct: 312 KCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLG 371

Query: 394 MIAGYAQIRQMDDAVKIFEEM 414
           ++        +D+  K F++M
Sbjct: 372 VLTACNHGGLVDEGRKYFKQM 392



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 154/303 (50%), Gaps = 19/303 (6%)

Query: 38  FSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEAR 97
           F +M +K+ V++N MIS Y  N RV+ ARK F++MP+RN+VSW SMI GY+    + EA+
Sbjct: 128 FDEMCEKDIVSWNMMISGYGNNDRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQ 187

Query: 98  ELFDKMFRPDLFSWALMITCYTRKGELEK-ARELFDLLPNKEDTACWNAMVAGYAKIGNY 156
            LFD M   DL SW +M++ Y   G+    AR LFD +P K +   W+ M+ GYA+ G  
Sbjct: 188 VLFDSMPVKDLASWNVMVSGYMDIGDYTNGARCLFDQMPMK-NLVTWSTMIGGYARNGQP 246

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTK--------NGEMHLASKFFEAMEERDVVSWNLM 208
            +A +L +    ++I    + + G           +    +   +       D+  +  +
Sbjct: 247 LKALELFERFKEQDIKPDETFILGIISACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSL 306

Query: 209 LDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV---- 264
           +D Y +   ++ A + F+    ++++ + TM++  A +G   +A  LFD+M   N+    
Sbjct: 307 IDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDS 366

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVRIAKLDEARRLLD 319
           V +  ++ A    G ++E  + F +M E   +      +  ++D   R+  L+EA  L+ 
Sbjct: 367 VTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIR 426

Query: 320 QMP 322
            MP
Sbjct: 427 NMP 429



 Score = 47.4 bits (111), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 4/116 (3%)

Query: 465 CAHLAALQLGRQIH-HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
           C  L +L   + IH  L I+S   +  FV N L+ +Y++ G    A  +F +    +   
Sbjct: 12  CKTLKSL---KSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQPNAYL 68

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
           W SLI GY  N    EA  LF +M  E ++    T   VL A + +    GG  ++
Sbjct: 69  WTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVY 124


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  351 bits (901), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 217/722 (30%), Positives = 368/722 (50%), Gaps = 64/722 (8%)

Query: 52  MISAYAKNGRVNDARKLFEQM-PQRNLVSWNSMIAGYLHNDKVKEA----RELFDKMFRP 106
           +IS YA+      +  +F  + P  N+  WNS+I    HN    +A     E+ +K  +P
Sbjct: 60  LISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQP 119

Query: 107 DLFSWALMITCYTRKGELEKA---RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           D F++  +I    R  +LE      E    +  + D    NA++  Y++  + + A+ + 
Sbjct: 120 DAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVF 179

Query: 164 DAMPSKNIVSWNSMLSGYTKNG----EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLD 219
           + M +++ VSWNS++SGY  NG     + +  KF       D  + + +L     L  + 
Sbjct: 180 EEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVK 239

Query: 220 SAWKFFQKIPEQNVVSWVT----MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
                   I +  +   V     +LS Y +  R+ EARR+F +M +++ V WN MI  Y 
Sbjct: 240 EGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYA 299

Query: 276 QRGQIEEAARLFIEMPE---RNPVSWTTMI-----DGYVRIAKLDEARRLLDQMPYKNIA 327
           Q G+ E + +LF++M +    + +S T+ I      G +++ K    + L+      +  
Sbjct: 300 QLGRHEASVKLFMDMIDGFVPDMLSITSTIRACGQSGDLQVGKFVH-KYLIGSGFECDTV 358

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM---- 383
           A   +I  Y +   +  A ++FD     D V WN +I GY Q G   E +  F+ M    
Sbjct: 359 ACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER 418

Query: 384 -------------------------VNKDIVTW---------NTMIAGYAQIRQMDDAVK 409
                                    ++ D++ +         N+++  YA+  +MDD +K
Sbjct: 419 KPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLK 478

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           +F  M    + +SWN +I+  +  +      ++   M  EG   D +T+   L  C+ LA
Sbjct: 479 VFSYMSAH-DIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLA 537

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
             + G++IH    KSG+ +++ +GN+LI MY+KCG ++N   +FK     DV++W +LI+
Sbjct: 538 VRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALIS 597

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE 589
            + + G   +A+K F++M + GV PD V FI  + ACSH G+V  GL+ F+ M   Y +E
Sbjct: 598 AFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLE 657

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649
           P +EHYAC++DLL+R+G L +A E +  M +KP+A +WG LL ACR   N  + +   +K
Sbjct: 658 PRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKK 717

Query: 650 LSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLS 709
           + EL    T  Y L+SN++A  G+WD+V+ VR SM+  G +K+PG SWIE++ +++ F +
Sbjct: 718 ILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRT 777

Query: 710 GD 711
           GD
Sbjct: 778 GD 779



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 113/452 (25%), Positives = 203/452 (44%), Gaps = 65/452 (14%)

Query: 5   LKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND 64
           ++ IG  G  +   N  ++   K  R+ EA ++FS+M+ K++VT+N+MI  YA+ GR   
Sbjct: 248 IEKIGIAGDVIIG-NGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEA 306

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGEL 124
           + KLF             MI G                 F PD+ S    I    + G+L
Sbjct: 307 SVKLFMD-----------MIDG-----------------FVPDMLSITSTIRACGQSGDL 338

Query: 125 EKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
           +  + +   L       DT   N ++  YAK G+   A+++ D    K+ V+WNS+++GY
Sbjct: 339 QVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGY 398

Query: 182 TKNGEMHLASKFFEAME-ER--DVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVV 234
           T++G      + F+ M+ ER  D V++ L+L  + +L D++        +     E  ++
Sbjct: 399 TQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELI 458

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
              ++L  YA+ G M +  ++F  M   ++++WN +IA+ V         ++  EM    
Sbjct: 459 IGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEG 518

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
            +     + G + +  L   RR            Q   I GY           IF     
Sbjct: 519 LMPDEATVLGILPMCSLLAVRR------------QGKEIHGY-----------IFKSGFE 555

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            +V   N +I+ Y++CG ++  I +F+ M  KD+VTW  +I+ +    +   A+K F++M
Sbjct: 556 SNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDM 615

Query: 415 ---GKRRNTVSWNALISGFLQNEFHLDALKIF 443
              G   ++V++ A I     +    + L+ F
Sbjct: 616 ELSGVLPDSVAFIAFIFACSHSGMVKEGLRFF 647



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 12/166 (7%)

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV-DVISWNSLIAGYAI 533
           R +H L I SG    +     LI+ YA+     ++  +F+   P  +V  WNS+I     
Sbjct: 39  RTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTH 98

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVE 593
           NG  T+A+  + EM  + + PD  TF  V+++C+ +  ++ G     C+   +A+E   E
Sbjct: 99  NGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELG-----CIVHEHAMEMGFE 153

Query: 594 HYA----CMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL-GAC 634
                   +ID+ SR   LD A  + + M  + +   W +L+ G C
Sbjct: 154 SDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVS-WNSLISGYC 198


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  351 bits (901), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 216/655 (32%), Positives = 336/655 (51%), Gaps = 43/655 (6%)

Query: 118 YTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA------KKLLDAMPSKNI 171
           +   G L +A  LFD +P+  D   +N ++  Y+       A      +++L    + N 
Sbjct: 67  HIASGHLSRAHHLFDQIPS-PDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNN 125

Query: 172 VSWNSMLSGYTKNGEMHLASKF----FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK 227
            ++   L   +   + H           A  + D+     +LD YV+   L  A   F  
Sbjct: 126 YTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFAT 185

Query: 228 IPEQNVVSWVTMLSGYARNGRMLEA--RRLFDQMPIR----NVVAWNAMIAAYVQRGQIE 281
           +P +++V+W  ML+GYA +G    A    L  QM +     N     A++    Q+G + 
Sbjct: 186 MPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALA 245

Query: 282 EAARLFIEM------PERNPVS--------WTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
           +   +          P RN  S         T ++D Y +   L  ARR+ D MP +N  
Sbjct: 246 QGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV 305

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW---NVMIKGYAQCG-----RMDEAIN- 378
             +A+I G+V   RM +A  +F  +    + C+     +      C      RM E ++ 
Sbjct: 306 TWSALIGGFVLCSRMTQAFLLFKAMLAQGL-CFLSPTSIASALRACASLDHLRMGEQLHA 364

Query: 379 -LFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHL 437
            L +  V+ D+   N++++ YA+   +D A+ +F+EM  + +TVS++AL+SG++QN    
Sbjct: 365 LLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYSALVSGYVQNGRAE 423

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
           +A  +F  M     + D +T+   + AC+HLAALQ GR  H   I  G  ++  + N+LI
Sbjct: 424 EAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALI 483

Query: 498 TMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
            MYAKCGRI  +  +F      D++SWN++IAGY I+G   EA  LF EM   G  PD V
Sbjct: 484 DMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGV 543

Query: 558 TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKG 617
           TFI +LSACSH GLV  G   F  M   Y + P +EHY CM+DLLSR G LDEA+E ++ 
Sbjct: 544 TFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQS 603

Query: 618 MKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEV 677
           M ++ +  +W  LLGACR+++NI LG+     + EL P+ T  + LLSN+++ AGR+DE 
Sbjct: 604 MPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEA 663

Query: 678 EKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            +VR+  +  G +K PGCSWIE+   +H F+ GD    ++ EI   L  +   I+
Sbjct: 664 AEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIK 718



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 109/414 (26%), Positives = 196/414 (47%), Gaps = 40/414 (9%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           Q +     +++  Y K   + DA  +F  MP R+LV+WN+M+AGY H+     A      
Sbjct: 157 QADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLS 216

Query: 103 M------FRPDLFSWALMITCYTRKGELEKARELFD------LLPNKEDTA-------CW 143
           M       RP+  +   ++    ++G L +   +        L PN+   +         
Sbjct: 217 MQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLG 276

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV- 202
            A++  YAK G+   A+++ DAMP++N V+W++++ G+     M  A   F+AM  + + 
Sbjct: 277 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 336

Query: 203 ----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT----MLSGYARNGRMLEARR 254
                S    L     LD L    +    + +  V + +T    +LS YA+ G + +A  
Sbjct: 337 FLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIA 396

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAK 310
           LFD+M +++ V+++A+++ YVQ G+ EEA  +F +M     E +  +  ++I     +A 
Sbjct: 397 LFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAA 456

Query: 311 LDEARRLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG 366
           L   R     +  + +A++T    A+I  Y +  R+D + Q+F+ + + D+V WN MI G
Sbjct: 457 LQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAG 516

Query: 367 YAQCGRMDEAINLFRQMVN----KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
           Y   G   EA  LF +M N     D VT+  +++  +    + +    F  MG 
Sbjct: 517 YGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGH 570



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 155/680 (22%), Positives = 273/680 (40%), Gaps = 153/680 (22%)

Query: 28  SGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRV--NDARKLFEQMPQRNLVSWNSMIA 85
           SG +  A  +F Q+   +  TYN +I AY+ +      D   L+ +M +  +   N    
Sbjct: 70  SGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFP 129

Query: 86  GYL--------HNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
             L        H+      R       + DLF    ++  Y +   L  A  +F  +P +
Sbjct: 130 FALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAM------------------------------- 166
            D   WNAM+AGYA  G Y+ A   L +M                               
Sbjct: 190 -DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGT 248

Query: 167 ------------PSKN--------IVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN 206
                       P++N        ++   ++L  Y K G +  A + F+AM  R+ V+W+
Sbjct: 249 SVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWS 308

Query: 207 LMLDGYVELDDLDSAWKFFQKIPEQNVVSWV-TMLSGYARNGRMLEARRLFDQMPI---- 261
            ++ G+V    +  A+  F+ +  Q +     T ++   R    L+  R+ +Q+      
Sbjct: 309 ALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAK 368

Query: 262 ----RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL 317
                ++ A N++++ Y + G I++A  LF EM  ++ VS++ ++ GYV+  + +EA  +
Sbjct: 369 SGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLV 428

Query: 318 LDQMPYKNIAAQTA-MIS--------GYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
             +M   N+    A M+S          +Q+ R    + I   + +   +C N +I  YA
Sbjct: 429 FKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSIC-NALIDMYA 487

Query: 369 QCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
           +CGR+D +  +F  M ++DIV+WNTMIAGY               +GK            
Sbjct: 488 KCGRIDLSRQVFNMMPSRDIVSWNTMIAGYG-----------IHGLGK------------ 524

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
                    +A  +F+ M   G   D  T  C LSAC+H   +  G+   H+        
Sbjct: 525 ---------EATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHV-------- 567

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
              +G+     Y    R+++   +      VD++S    +          EA +  + M 
Sbjct: 568 ---MGHG----YGLTPRMEHYICM------VDLLSRGGFL---------DEAYEFIQSMP 605

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
           +     D   ++ +L AC     +D G K+   + E+        ++  + ++ S AGR 
Sbjct: 606 LRA---DVRVWVALLGACRVYKNIDLGKKVSRMIQELG--PEGTGNFVLLSNIYSAAGRF 660

Query: 609 DEAFEM-----VKGMKIKPN 623
           DEA E+     V+G K  P 
Sbjct: 661 DEAAEVRIIQKVQGFKKSPG 680



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 93/409 (22%), Positives = 169/409 (41%), Gaps = 71/409 (17%)

Query: 26  GKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIA 85
            K G +  A ++F  M  +N VT++++I  +    R+  A  LF+ M  + L        
Sbjct: 284 AKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC------- 336

Query: 86  GYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTAC 142
            +L    +  A               A     + R GE     +L  LL       D   
Sbjct: 337 -FLSPTSIASALR-------------ACASLDHLRMGE-----QLHALLAKSGVHADLTA 377

Query: 143 WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME---- 198
            N++++ YAK G  ++A  L D M  K+ VS+++++SGY +NG    A   F+ M+    
Sbjct: 378 GNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNV 437

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG----YARNGRMLEARR 254
           E D  +   ++     L  L         +  + + S  ++ +     YA+ GR+  +R+
Sbjct: 438 EPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQ 497

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAK 310
           +F+ MP R++V+WN MIA Y   G  +EA  LF+EM       + V++  ++        
Sbjct: 498 VFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGL 557

Query: 311 LDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC 370
           + E +     M +           GY    RM+           H +   +++ +G    
Sbjct: 558 VIEGKHWFHVMGH-----------GYGLTPRME-----------HYICMVDLLSRG---- 591

Query: 371 GRMDEAINLFRQM-VNKDIVTWNTMIAGYAQIRQMDDAVKI---FEEMG 415
           G +DEA    + M +  D+  W  ++      + +D   K+    +E+G
Sbjct: 592 GFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELG 640



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 118/240 (49%), Gaps = 19/240 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  ++   K+G +++AI +F +M+ K+TV+Y++++S Y +NGR  +A  +F++M   N+ 
Sbjct: 379 NSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVE 438

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWA----LMITCYTRKGELEKAREL 130
               +  S+I    H   ++  R     +    L S       +I  Y + G ++ +R++
Sbjct: 439 PDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQV 498

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGE 186
           F+++P++ D   WN M+AGY   G   EA  L   M +       V++  +LS  + +G 
Sbjct: 499 FNMMPSR-DIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGL 557

Query: 187 MHLASKFFEAMEERDVVS-----WNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSWVTML 240
           +     +F  M     ++     +  M+D       LD A++F Q +P   +V  WV +L
Sbjct: 558 VIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALL 617


>gi|222616424|gb|EEE52556.1| hypothetical protein OsJ_34807 [Oryza sativa Japonica Group]
          Length = 1215

 Score =  351 bits (901), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 223/753 (29%), Positives = 374/753 (49%), Gaps = 68/753 (9%)

Query: 45   NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
            N     +++  Y   G V+DA++LF +MP+RN+VSW +++     N  ++EA   + +M 
Sbjct: 380  NVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMR 439

Query: 105  RPDLFSWA-LMITCYTRKGELEK--------ARELFDLLPNKEDTACWNAMVAGYAKIGN 155
            R  +   A    T  +  G LE         ++ +   L N+   A  N+++  +  +G 
Sbjct: 440  RDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVA--NSLITMFGNLGR 497

Query: 156  YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDG 211
             ++A+KL D M   + +SWN+M+S Y+  G        F  M       D  +   ++  
Sbjct: 498  VHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSV 557

Query: 212  YVELDDLDSAWKFFQKIPEQNVVSWVTMLSG----YARNGRMLEARRLFDQMPIRNVVAW 267
                D               ++ S VT+++     Y+  G++ +A  LF  M  R++++W
Sbjct: 558  CASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISW 617

Query: 268  NAMIAAYVQRGQIEEA----ARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL----LD 319
            N MI++YVQ     +A     +LF      N +++++ +        L + + +    L 
Sbjct: 618  NTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQ 677

Query: 320  QMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
                +N+    ++I+ Y +   M++A ++F  + THD+V +NV+I GYA      +A+ +
Sbjct: 678  LSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQV 737

Query: 380  FR------------QMVN----------------------------KDIVTWNTMIAGYA 399
            F              M+N                             D    N++I  YA
Sbjct: 738  FSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYA 797

Query: 400  QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
            +   ++ +  IF  +   +N VSWNA+I+  +Q     +ALK+F+ M   G K D   LA
Sbjct: 798  KCGNLESSTNIFNSI-TNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCLA 856

Query: 460  CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
              LS+CA LA+L+ G Q+H L +KSG  +D +V N+ + MY KCG++     +  D    
Sbjct: 857  ECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIR 916

Query: 520  DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
                WN+LI+GYA  G   EA + F++MV  G  PD VTF+ +LSACSH GLVD G+  +
Sbjct: 917  PQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLVDKGIDYY 976

Query: 580  ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
              M   + + P ++H  C++DLL R GR  EA + ++ M + PN  IW +LL + R H+N
Sbjct: 977  NSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLIWRSLLSSSRTHKN 1036

Query: 640  IKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
            +++GR   +KL EL+P   S Y LLSN++A   RW +V+K+R  M+     K+P CSW++
Sbjct: 1037 LEIGRKTAKKLLELDPFDDSAYVLLSNLYATNARWADVDKLRSHMKTININKRPACSWLK 1096

Query: 700  VKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            +KN++ TF  GD       +I   L  +  ++R
Sbjct: 1097 LKNEVSTFGIGDRGHKHAEKIYAKLDEMLLKLR 1129



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 120/501 (23%), Positives = 204/501 (40%), Gaps = 108/501 (21%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  IT  G  GRV +A K+F +M + +T+++N+MIS Y+  G  +    +F  M    L 
Sbjct: 486 NSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLR 545

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITC----YTRKGELEKAREL 130
               +  S+++    +D       +     R  L S   +I      Y+  G+L  A  L
Sbjct: 546 PDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFL 605

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------PS---------------- 168
           F  + ++ D   WN M++ Y +  N  +A K L  +      P+                
Sbjct: 606 FWNM-SRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGA 664

Query: 169 -----------------KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
                            +N++  NS+++ Y K   M  A K F++M   D+VS+N+++ G
Sbjct: 665 LIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGG 724

Query: 212 YVELDDLDSAWKFFQKIPEQNV-VSWVTM------------------------------- 239
           Y  L+D   A + F  +    +  +++TM                               
Sbjct: 725 YAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLS 784

Query: 240 --------LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
                   ++ YA+ G +  +  +F+ +  +N+V+WNA+IAA VQ G  EEA +LFI+M 
Sbjct: 785 DEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQ 844

Query: 292 ER----NPVSWTTMIDGYVRIAKLDEARRL--------LDQMPYKNIAAQTAMISGYVQN 339
                 + V     +     +A L+E  +L        LD   Y       A +  Y + 
Sbjct: 845 HAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSY----VVNAAMDMYGKC 900

Query: 340 KRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV----NKDIVTWNTMI 395
            +MDE  Q+          CWN +I GYA+ G   EA   F+QMV      D VT+  ++
Sbjct: 901 GKMDEMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALL 960

Query: 396 AGYAQIRQMDDAVKIFEEMGK 416
           +  +    +D  +  +  M  
Sbjct: 961 SACSHAGLVDKGIDYYNSMAS 981



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 156/372 (41%), Gaps = 83/372 (22%)

Query: 285 RLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM-----PYK--------------- 324
            LF EM +R P +W T + G VR     +A  +L  M     P                 
Sbjct: 298 HLFDEMADRTPSTWYTAVSGCVRCGSHGKAFEMLRGMREPGVPLSGFALASLVTACERRG 357

Query: 325 ----------------------NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNV 362
                                 N+   TA++  Y     + +A ++F ++   +VV W  
Sbjct: 358 RDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTA 417

Query: 363 MIKGYAQCGRMDEAINLFRQM--------------------------------------- 383
           ++   +  G ++EA+  +RQM                                       
Sbjct: 418 LMVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSG 477

Query: 384 VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
           +   +   N++I  +  + ++ DA K+F+ M +  +T+SWNA+IS +           +F
Sbjct: 478 LQNQVSVANSLITMFGNLGRVHDAEKLFDRM-EEHDTISWNAMISMYSHQGICSKCFLVF 536

Query: 444 VLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
             M   G + D +TL   +S CA       G  IH L ++S   + + V N+L+ MY+  
Sbjct: 537 SDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAA 596

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
           G++ +AE LF +    D+ISWN++I+ Y  N N+T+A+K   ++     +P+ +TF   L
Sbjct: 597 GKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSAL 656

Query: 564 SACSHVG-LVDG 574
            ACS  G L+DG
Sbjct: 657 GACSSPGALIDG 668



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 146/331 (44%), Gaps = 49/331 (14%)

Query: 392 NTMIAGYAQIRQMDDA-----VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446
           NT++A Y   RQ D +     + +F+EM  R  + +W   +SG ++   H  A ++   M
Sbjct: 278 NTLLAFY--FRQRDASAAAAALHLFDEMADRTPS-TWYTAVSGCVRCGSHGKAFEMLRGM 334

Query: 447 TQEGKKADHSTLACALSACAHLA---ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
            + G       LA  ++AC        +  G  IH L  ++G + ++++G +L+ +Y   
Sbjct: 335 REPGVPLSGFALASLVTACERRGRDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSR 394

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
           G + +A+ LF +    +V+SW +L+   + NG   EA++ + +M  +GV  +   F  V+
Sbjct: 395 GIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVV 454

Query: 564 SAC----------------------SHVGLVDGGLKLFECMTEVYAIEPLV----EH--- 594
           S C                      + V + +  + +F  +  V+  E L     EH   
Sbjct: 455 SLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTI 514

Query: 595 -YACMIDLLSRAGRLDEAFEMVKGMK---IKPNAGIWGTLLGACRMHQNIKLGRIAVEKL 650
            +  MI + S  G   + F +   M+   ++P+A    +L+  C    +   G   +  L
Sbjct: 515 SWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGS-GIHSL 573

Query: 651 ---SELEPQKTSCYALLSNMHAEAGRWDEVE 678
              S L+   T   AL+ NM++ AG+  + E
Sbjct: 574 CLRSSLDSSVTVINALV-NMYSAAGKLSDAE 603



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 69/328 (21%), Positives = 142/328 (43%), Gaps = 41/328 (12%)

Query: 19   NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR--- 75
            N  IT   K G +E +  IF+ ++ KN V++N++I+A  + G   +A KLF  M      
Sbjct: 790  NSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNK 849

Query: 76   -NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMI-TCYTRKGELEKARELFDL 133
             + V     ++       ++E  +L     +  L S + ++       G+  K  E+  +
Sbjct: 850  LDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQV 909

Query: 134  LPNK--EDTACWNAMVAGYAKIGNYNEAKKLLDAMPS----KNIVSWNSMLSGYTKNGEM 187
            +P++      CWN +++GYAK G + EA++    M +     + V++ ++LS  +  G +
Sbjct: 910  VPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLV 969

Query: 188  HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
                 ++ +M     VS  +                       ++ V  V +L    R G
Sbjct: 970  DKGIDYYNSMASSFGVSPGI-----------------------KHCVCIVDLL---GRLG 1003

Query: 248  RMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQIE---EAARLFIEMPERNPVSWTTMID 303
            R  EA +  ++MP+  N + W +++++      +E   + A+  +E+   +  ++  + +
Sbjct: 1004 RFAEAEKFIEEMPVLPNDLIWRSLLSSSRTHKNLEIGRKTAKKLLELDPFDDSAYVLLSN 1063

Query: 304  GYVRIAKLDEARRLLDQMPYKNIAAQTA 331
             Y   A+  +  +L   M   NI  + A
Sbjct: 1064 LYATNARWADVDKLRSHMKTININKRPA 1091


>gi|302760463|ref|XP_002963654.1| hypothetical protein SELMODRAFT_79648 [Selaginella moellendorffii]
 gi|300168922|gb|EFJ35525.1| hypothetical protein SELMODRAFT_79648 [Selaginella moellendorffii]
          Length = 580

 Score =  351 bits (901), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 195/582 (33%), Positives = 304/582 (52%), Gaps = 34/582 (5%)

Query: 80  WNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKED 139
           WN+++  Y  N ++ EA+ +FD+M      SW  MIT Y               +PN   
Sbjct: 1   WNNILTAYSQNLQLPEAKSVFDRMTERTFESWNAMITAY--------------FIPNSS- 45

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE 199
                   A  A++          + MP +N  +WN ++   ++NG +  A   F+ + E
Sbjct: 46  --------ASLARLA--------FERMPERNPYTWNFLIVASSRNGHLEEARMVFDKLPE 89

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM 259
           +  V+WN M+  Y +   +  A   F  +P ++V S   +L+ YA++G + EA+ +FD +
Sbjct: 90  KSAVTWNTMISCYAQKQCVSEAKCLFDSLPVKDVFSRNILLTAYAQSGNLAEAKEMFDSI 149

Query: 260 PIRNV--VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL 317
           P   +  + WN ++ AY Q  Q+ EA  +F  M ER   SW  MI  YV    LD+A+ +
Sbjct: 150 PSEELTSICWNNILTAYSQNRQLPEAKSVFDRMTERTVESWNAMITAYVGNGDLDDAKLV 209

Query: 318 LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAI 377
            D +  KN  A T+M++ Y Q  R  +A  +FD++  HDVV W  M+  Y   G +  A 
Sbjct: 210 YDMITEKNSIAGTSMVNAYAQEGRTRQAKLVFDEMVDHDVVSWTTMLAAYLNNGHITSAE 269

Query: 378 NLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHL 437
           NLF  M  +D + W+TM+  YA    ++ A K+ EEM   ++  SW ALISG  +     
Sbjct: 270 NLFALMPARDYLAWSTMVLAYAIKGNIELATKLHEEM-PVKDATSWTALISGHARAGHSK 328

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
            AL  F LM  EG + D  TL  AL ACA   AL  G+ I   A   G   D FVG +L+
Sbjct: 329 QALAYFKLMDLEGIEPDRITLMSALEACASSTALAEGKTIFEGAAARGLDRDTFVGTALV 388

Query: 498 TMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
           +M+ KCGR+  A  LF +    +V+SW ++I  YA +G  + A ++F  M ++G  P+ +
Sbjct: 389 SMFGKCGRLDQARALFNNLPLPNVVSWTNIIVAYAQSGERSLAAEMFNRMDLQGEQPNWL 448

Query: 558 TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKG 617
           TF  VL+ACSH GL++     F  M    +I+P+VEHY C++DLL R+G+LD   ++   
Sbjct: 449 TFSTVLAACSHGGLLEDARCYFLRMIGDNSIDPVVEHYRCLVDLLGRSGQLDRMEDLANE 508

Query: 618 MKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTS 659
           M  + +   W  +LGAC +H + + G    ++L E++  + S
Sbjct: 509 MPFEGDEVSWTAVLGACSLHGDTERGGRIAKQLLEMDLDRGS 550



 Score =  257 bits (656), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 155/544 (28%), Positives = 289/544 (53%), Gaps = 17/544 (3%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAY-AKNGRVNDARKLFEQMPQRNL 77
           N  +T   ++ ++ EA  +F +M+++   ++N+MI+AY   N   + AR  FE+MP+RN 
Sbjct: 2   NNILTAYSQNLQLPEAKSVFDRMTERTFESWNAMITAYFIPNSSASLARLAFERMPERNP 61

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
            +WN +I     N  ++EAR +FDK+      +W  MI+CY +K  + +A+ LFD LP K
Sbjct: 62  YTWNFLIVASSRNGHLEEARMVFDKLPEKSAVTWNTMISCYAQKQCVSEAKCLFDSLPVK 121

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS--WNSMLSGYTKNGEMHLASKFFE 195
            D    N ++  YA+ GN  EAK++ D++PS+ + S  WN++L+ Y++N ++  A   F+
Sbjct: 122 -DVFSRNILLTAYAQSGNLAEAKEMFDSIPSEELTSICWNNILTAYSQNRQLPEAKSVFD 180

Query: 196 AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRL 255
            M ER V SWN M+  YV   DLD A   +  I E+N ++  +M++ YA+ GR  +A+ +
Sbjct: 181 RMTERTVESWNAMITAYVGNGDLDDAKLVYDMITEKNSIAGTSMVNAYAQEGRTRQAKLV 240

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR 315
           FD+M   +VV+W  M+AAY+  G I  A  LF  MP R+ ++W+TM+  Y     ++ A 
Sbjct: 241 FDEMVDHDVVSWTTMLAAYLNNGHITSAENLFALMPARDYLAWSTMVLAYAIKGNIELAT 300

Query: 316 RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCG 371
           +L ++MP K+  + TA+ISG+ +     +A   F  +       D +     ++  A   
Sbjct: 301 KLHEEMPVKDATSWTALISGHARAGHSKQALAYFKLMDLEGIEPDRITLMSALEACASST 360

Query: 372 RMDEAINLFR----QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
            + E   +F     + +++D      +++ + +  ++D A  +F  +    N VSW  +I
Sbjct: 361 ALAEGKTIFEGAAARGLDRDTFVGTALVSMFGKCGRLDQARALFNNL-PLPNVVSWTNII 419

Query: 428 SGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV 487
             + Q+     A ++F  M  +G++ +  T +  L+AC+H   L+  R      I    +
Sbjct: 420 VAYAQSGERSLAAEMFNRMDLQGEQPNWLTFSTVLAACSHGGLLEDARCYFLRMIGDNSI 479

Query: 488 NDLFVG-NSLITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGNATEAIKLF 544
           + +      L+ +  + G++   E L  +  P   D +SW +++   +++G+     ++ 
Sbjct: 480 DPVVEHYRCLVDLLGRSGQLDRMEDLANEM-PFEGDEVSWTAVLGACSLHGDTERGGRIA 538

Query: 545 EEMV 548
           ++++
Sbjct: 539 KQLL 542



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 113/413 (27%), Positives = 220/413 (53%), Gaps = 15/413 (3%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           +  N  I    ++G +EEA  +F ++ +K+ VT+N+MIS YA+   V++A+ LF+ +P +
Sbjct: 62  YTWNFLIVASSRNGHLEEARMVFDKLPEKSAVTWNTMISCYAQKQCVSEAKCLFDSLPVK 121

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFS--WALMITCYTRKGELEKARELFDL 133
           ++ S N ++  Y  +  + EA+E+FD +   +L S  W  ++T Y++  +L +A+ +FD 
Sbjct: 122 DVFSRNILLTAYAQSGNLAEAKEMFDSIPSEELTSICWNNILTAYSQNRQLPEAKSVFDR 181

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
           +  +     WNAM+  Y   G+ ++AK + D +  KN ++  SM++ Y + G    A   
Sbjct: 182 MTERT-VESWNAMITAYVGNGDLDDAKLVYDMITEKNSIAGTSMVNAYAQEGRTRQAKLV 240

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEAR 253
           F+ M + DVVSW  ML  Y+    + SA   F  +P ++ ++W TM+  YA  G +  A 
Sbjct: 241 FDEMVDHDVVSWTTMLAAYLNNGHITSAENLFALMPARDYLAWSTMVLAYAIKGNIELAT 300

Query: 254 RLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF----IEMPERNPVSWTTMIDGYVRIA 309
           +L ++MP+++  +W A+I+ + + G  ++A   F    +E  E + ++  + ++      
Sbjct: 301 KLHEEMPVKDATSWTALISGHARAGHSKQALAYFKLMDLEGIEPDRITLMSALEACASST 360

Query: 310 KLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIK 365
            L E + + +    + +       TA++S + +  R+D+A  +F+ +   +VV W  +I 
Sbjct: 361 ALAEGKTIFEGAAARGLDRDTFVGTALVSMFGKCGRLDQARALFNNLPLPNVVSWTNIIV 420

Query: 366 GYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            YAQ G    A  +F +M       + +T++T++A  +    ++DA   F  M
Sbjct: 421 AYAQSGERSLAAEMFNRMDLQGEQPNWLTFSTVLAACSHGGLLEDARCYFLRM 473


>gi|225463207|ref|XP_002267970.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08490-like [Vitis vinifera]
          Length = 868

 Score =  351 bits (901), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 219/710 (30%), Positives = 366/710 (51%), Gaps = 49/710 (6%)

Query: 43  QKNTVTYNSMISAYAKNGRV-NDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFD 101
           + +T+  N++IS YAK G V +DA   F ++  +++VSWN++IAG+  N   +EA +LF 
Sbjct: 173 ESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFH 232

Query: 102 KMFR-PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
            M + P   ++A + +       LE+                     AGY + G      
Sbjct: 233 AMLKGPIQPNYATIASILPVCASLEEN--------------------AGY-RYGKEVHCH 271

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
            L      +++   NS++S Y + G+M  A   F  M+ RD+VSWN ++ GY    +   
Sbjct: 272 VLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNAIIAGYASNGEWLK 331

Query: 221 AWKFFQKIP-----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR------NVVAWNA 269
           A + F +       + + V+ V++L   A    +  A+ +   + IR      +    NA
Sbjct: 332 ALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYI-IRHPGLREDTSVGNA 390

Query: 270 MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
           +++ Y +    + A + F+ +  ++ +SW  ++D +           LL  M  + I   
Sbjct: 391 LLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLVNLLHWMLREGIRPD 450

Query: 330 TAMISGYVQN-------KRMDEANQIFDKIGT----HDVVCWNVMIKGYAQCGRMDEAIN 378
           +  I   +Q        K++ E +    + G           N M+  YA+CG M  A+N
Sbjct: 451 SITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQGDAGPTLGNGMLDAYAKCGNMKYAVN 510

Query: 379 LFRQMVNK-DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHL 437
           +F  +  K ++VT N+MI+GY      DDA  IF  M +  +  +WN ++  + +N+F  
Sbjct: 511 IFGSLSEKRNVVTCNSMISGYVNSSSHDDAYAIFNTMSET-DLTTWNLMVRVYAENDFPD 569

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
            AL +F  +  +G K D  T+   L ACAH+A++ + RQ H   I++ + ND+ +  + I
Sbjct: 570 QALSLFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHGYVIRACF-NDVRLNGAFI 628

Query: 498 TMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
            MY+KCG +  A  LF  +   D++ + +++ G+A++G   EA+++F  M+  GV PD V
Sbjct: 629 DMYSKCGSVFGAYKLFLSSPQKDLVMFTAMVGGFAMHGMGEEALRIFSYMLELGVKPDHV 688

Query: 558 TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKG 617
               VL ACSH GLVD G K+F  + +V+  +P +E YAC++DLL+R GR+ +A+  V  
Sbjct: 689 IITAVLFACSHAGLVDEGWKIFNSIEKVHGFQPTMEQYACVVDLLARGGRIKDAYTFVTR 748

Query: 618 MKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEV 677
           M I+ NA IWGTLLGACR H  ++LGR+  + L ++E      Y ++SN++A   RWD V
Sbjct: 749 MPIEANANIWGTLLGACRTHHEVELGRVVADHLFKIESDNIGNYVVMSNLYAADARWDGV 808

Query: 678 EKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
            ++R  M     +K  GCSWIEV  + + F++GD    + + I  TL TL
Sbjct: 809 MEIRRLMRTRELKKPAGCSWIEVGRRKNVFIAGDSSHPQRSIIYRTLSTL 858



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 186/380 (48%), Gaps = 25/380 (6%)

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR-NGRMLEARRLFDQMPIRNVVA 266
           +L+ Y +   LD   K F ++ +++ V W  +LSG A       E  RLF  M + N   
Sbjct: 80  LLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAK 139

Query: 267 WNAMIAAYV------QRGQIEEAARLFI--EMPERNPVSWTTMIDGYVRIAKL-DEARRL 317
            N++  A V       R    ++   ++     E + ++   +I  Y +   +  +A   
Sbjct: 140 PNSVTIAIVLPVCARLREDAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAA 199

Query: 318 LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD------------KIGTHDVVCWNVMIK 365
            +++ +K++ +  A+I+G+ +NK  +EA ++F              I +   VC ++   
Sbjct: 200 FNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEEN 259

Query: 366 GYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
              + G+      L R  + +D+   N++++ Y +I QM+ A  +F  M K R+ VSWNA
Sbjct: 260 AGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNM-KSRDLVSWNA 318

Query: 426 LISGFLQNEFHLDALKIFV-LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK- 483
           +I+G+  N   L AL++F   ++ E  K D  TL   L ACAH+  LQ+ + IH   I+ 
Sbjct: 319 IIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRH 378

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
            G   D  VGN+L++ YAKC   Q A   F      D+ISWN+++  +  +G  T  + L
Sbjct: 379 PGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLVNL 438

Query: 544 FEEMVMEGVAPDPVTFIGVL 563
              M+ EG+ PD +T + ++
Sbjct: 439 LHWMLREGIRPDSITILTII 458



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 146/328 (44%), Gaps = 33/328 (10%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQK-NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           N  +    K G ++ A+ IF  +S+K N VT NSMIS Y  +   +DA  +F  M + +L
Sbjct: 493 NGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVNSSSHDDAYAIFNTMSETDL 552

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDL 133
            +WN M+  Y  ND   +A  LF ++     +PD+ +   ++        +   R+    
Sbjct: 553 TTWNLMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHGY 612

Query: 134 LPNKEDTACWN------AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
           +      AC+N      A +  Y+K G+   A KL  + P K++V + +M+ G+  +G  
Sbjct: 613 VIR----ACFNDVRLNGAFIDMYSKCGSVFGAYKLFLSSPQKDLVMFTAMVGGFAMHGMG 668

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYV----ELDDLDSAWKFFQKIP-----EQNVVSWVT 238
             A + F  M E  V   ++++   +        +D  WK F  I      +  +  +  
Sbjct: 669 EEALRIFSYMLELGVKPDHVIITAVLFACSHAGLVDEGWKIFNSIEKVHGFQPTMEQYAC 728

Query: 239 MLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE----EAARLFIEMPER 293
           ++   AR GR+ +A     +MPI  N   W  ++ A     ++E     A  LF ++   
Sbjct: 729 VVDLLARGGRIKDAYTFVTRMPIEANANIWGTLLGACRTHHEVELGRVVADHLF-KIESD 787

Query: 294 NPVSWTTMIDGYVRIAKLD---EARRLL 318
           N  ++  M + Y   A+ D   E RRL+
Sbjct: 788 NIGNYVVMSNLYAADARWDGVMEIRRLM 815



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 116/228 (50%), Gaps = 8/228 (3%)

Query: 398 YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH-LDALKIFVLMTQEGK-KADH 455
           YA+   +D   K+F EM  +R+ V WN ++SG    + H  + +++F  M    + K + 
Sbjct: 84  YAKSGALDYCNKLFGEM-DQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAKPNS 142

Query: 456 STLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI-QNAELLFK 514
            T+A  L  CA L     G+ +H   IKSG  +    GN+LI+MYAKCG +  +A   F 
Sbjct: 143 VTIAIVLPVCARLRE-DAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFN 201

Query: 515 DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574
             +  DV+SWN++IAG++ N    EA KLF  M+   + P+  T   +L  C+ +    G
Sbjct: 202 RIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAG 261

Query: 575 GLKLFECMTEVYAIEPLVEHYACMIDLLS---RAGRLDEAFEMVKGMK 619
                E    V     LVE  + +  L+S   R G++++A  + + MK
Sbjct: 262 YRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMK 309



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 108/470 (22%), Positives = 187/470 (39%), Gaps = 102/470 (21%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM-------PQR-NLVS- 79
           G++E+A  +F  M  ++ V++N++I+ YA NG    A +LF +        P    LVS 
Sbjct: 296 GQMEKAEFLFRNMKSRDLVSWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSV 355

Query: 80  --------------------------------WNSMIAGYLHNDKVKEARELFDKMFRPD 107
                                            N++++ Y   +  + A + F  + R D
Sbjct: 356 LPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKD 415

Query: 108 LFSWALMITCYTRKG-----------------------------------ELEKAREL-- 130
           L SW  ++  +T  G                                    ++K +E   
Sbjct: 416 LISWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHS 475

Query: 131 ----FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK-NIVSWNSMLSGYTKNG 185
               F LL         N M+  YAK GN   A  +  ++  K N+V+ NSM+SGY  + 
Sbjct: 476 YSIRFGLLQGDAGPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVNSS 535

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLS 241
               A   F  M E D+ +WNLM+  Y E D  D A   F ++  Q    ++V+ +++L 
Sbjct: 536 SHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILP 595

Query: 242 GYARNGRMLEARRLFDQMPIR---NVVAWN-AMIAAYVQRGQIEEAARLFIEMPERNPVS 297
             A    +   R+    + IR   N V  N A I  Y + G +  A +LF+  P+++ V 
Sbjct: 596 ACAHMASVHMLRQCHGYV-IRACFNDVRLNGAFIDMYSKCGSVFGAYKLFLSSPQKDLVM 654

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKI- 352
           +T M+ G+      +EA R+   M    +       TA++        +DE  +IF+ I 
Sbjct: 655 FTAMVGGFAMHGMGEEALRIFSYMLELGVKPDHVIITAVLFACSHAGLVDEGWKIFNSIE 714

Query: 353 ---GTHDVV-CWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAG 397
              G    +  +  ++   A+ GR+ +A     +M +  +   W T++  
Sbjct: 715 KVHGFQPTMEQYACVVDLLARGGRIKDAYTFVTRMPIEANANIWGTLLGA 764



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 4/136 (2%)

Query: 436 HLDALKIFV--LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG 493
           H +AL +F+  +    G K +   LA  L +C  ++A++ G  +H  A+K G+V+   + 
Sbjct: 18  HDEALSLFLERVRCSVGYKPNGQILAALLKSCVAISAIRFGSVLHGYALKLGHVSCQSLC 77

Query: 494 NSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYA-INGNATEAIKLFEEMVMEGV 552
             L+ +YAK G +     LF + D  D + WN +++G A    +  E ++LF  M M   
Sbjct: 78  KGLLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNE 137

Query: 553 A-PDPVTFIGVLSACS 567
           A P+ VT   VL  C+
Sbjct: 138 AKPNSVTIAIVLPVCA 153


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  351 bits (901), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 206/658 (31%), Positives = 332/658 (50%), Gaps = 67/658 (10%)

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
           NKE    W   +  +   G    A+++ D +P+ +  ++N+++  Y+  G  H A   + 
Sbjct: 33  NKE----WQQELEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYR 88

Query: 196 AMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNG 247
           +M    V     ++  +L     L DL +               ++     ++  Y R  
Sbjct: 89  SMLYFRVPPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCA 148

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER-----NPVSWTTMI 302
           R   A  +F +MP+R+VVAWNAM+A Y   G    A    ++M +R     N  +  +++
Sbjct: 149 RFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLL 208

Query: 303 DGYVRIAKLDEA--------RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
               +   L +         R  LDQ   + +   TA++  Y + K +  A ++F  +  
Sbjct: 209 PLLAQHGALFQGTSVHAYCLRAYLDQNE-EQVLIGTALLDMYAKCKHLVYACRVFHGMTV 267

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQM------------------------------- 383
            + V W+ +I G+  C RM EA NLF+ M                               
Sbjct: 268 RNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQ 327

Query: 384 ---------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
                    ++ D+   N++++ YA+   +++A  +F+E+  + +T+S+ AL+SG++QN 
Sbjct: 328 LHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIK-DTISYGALLSGYVQNG 386

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN 494
              +A  +F  M     + D +T+   + AC+HLAALQ GR  H   I  G   +  + N
Sbjct: 387 KAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICN 446

Query: 495 SLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP 554
           SLI MYAKCGRI  +  +F      D++SWN++IAGY I+G   EA  LF  M  +G  P
Sbjct: 447 SLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEP 506

Query: 555 DPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEM 614
           D VTFI +++ACSH GLV  G   F+ MT  Y I P +EHY CM+DLL+R G LDEA++ 
Sbjct: 507 DDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQF 566

Query: 615 VKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRW 674
           ++ M +K +  +WG LLGACR+H+NI LG+     + +L P+ T  + LLSN+ + AGR+
Sbjct: 567 IQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRF 626

Query: 675 DEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           DE  +VR+  +  G +K PGCSWIE+   +H F+ GD     + +I + L  +   I+
Sbjct: 627 DEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHPCSPDIYHELDNILIDIK 684



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 116/472 (24%), Positives = 210/472 (44%), Gaps = 39/472 (8%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGY----LHNDKVKEARELFDK-MF 104
            ++I  Y +  R   A  +F +MP R++V+WN+M+AGY    +++  +    ++ D+   
Sbjct: 138 TALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGL 197

Query: 105 RPDLFSWALMITCYTRKGELEKARELFD------LLPNKEDTACWNAMVAGYAKIGNYNE 158
           RP+  +   ++    + G L +   +        L  N+E      A++  YAK  +   
Sbjct: 198 RPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVY 257

Query: 159 AKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF-----EAMEERDVVSWNLMLDGYV 213
           A ++   M  +N V+W++++ G+     M  A   F     E M      S    L    
Sbjct: 258 ACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCA 317

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVT----MLSGYARNGRMLEARRLFDQMPIRNVVAWNA 269
            L DL    +    + +  + + +T    +LS YA+ G + EA  LFD++ I++ +++ A
Sbjct: 318 SLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGA 377

Query: 270 MIAAYVQRGQIEEAARLFIEMPERNP----VSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           +++ YVQ G+ EEA  +F +M   N      +  ++I     +A L   R     +  + 
Sbjct: 378 LLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRG 437

Query: 326 IAAQT----AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
           +A +T    ++I  Y +  R+D + Q+FDK+   D+V WN MI GY   G   EA  LF 
Sbjct: 438 LALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFL 497

Query: 382 QMVNK----DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS----WNALISGFLQN 433
            M N+    D VT+  +IA  +    + +    F+ M  +   +     +  ++    + 
Sbjct: 498 SMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARG 557

Query: 434 EFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485
            F  +A +    M     KAD       L AC     + LG+Q+  +  K G
Sbjct: 558 GFLDEAYQFIQSMPL---KADVRVWGALLGACRIHKNIDLGKQVSRMIQKLG 606



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 125/590 (21%), Positives = 223/590 (37%), Gaps = 167/590 (28%)

Query: 80  WNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL------FDL 133
           W   +  ++   ++  AR++FD++  PD  ++  +I  Y+ +G    A +L      F +
Sbjct: 36  WQQELEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRV 95

Query: 134 LPNK--------------------------------EDTACWNAMVAGYAKIGNYNEAKK 161
            PNK                                 D     A++  Y +   +  A  
Sbjct: 96  PPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAAN 155

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER--------------------- 200
           +   MP +++V+WN+ML+GY  +G  H A      M++R                     
Sbjct: 156 VFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHG 215

Query: 201 ----------------------DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
                                  V+    +LD Y +   L  A + F  +  +N V+W  
Sbjct: 216 ALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSA 275

Query: 239 MLSGYARNGRMLEARRLFDQMPIR------------------------------------ 262
           ++ G+    RM EA  LF  M +                                     
Sbjct: 276 LIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKS 335

Query: 263 ----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
               ++ A N++++ Y + G I EA  LF E+  ++ +S+  ++ GYV+  K +EA  + 
Sbjct: 336 GIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVF 395

Query: 319 DQMPYKNIAAQTA-MIS--------GYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ 369
            +M   N+    A M+S          +Q+ R    + I   +     +C N +I  YA+
Sbjct: 396 KKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSIC-NSLIDMYAK 454

Query: 370 CGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
           CGR+D +  +F +M  +DIV+WNTMIAGY               +GK             
Sbjct: 455 CGRIDLSRQVFDKMPARDIVSWNTMIAGYG-----------IHGLGK------------- 490

Query: 430 FLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ-IHHLAIKSGYVN 488
                   +A  +F+ M  +G + D  T  C ++AC+H   +  G+     +  K G + 
Sbjct: 491 --------EATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILP 542

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGN 536
            +     ++ + A+ G +  A   F  + P+  DV  W +L+    I+ N
Sbjct: 543 RMEHYICMVDLLARGGFLDEA-YQFIQSMPLKADVRVWGALLGACRIHKN 591



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 174/402 (43%), Gaps = 60/402 (14%)

Query: 35  IKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVK 94
           ++ +   +++  +   +++  YAK   +  A ++F  M  RN V+W+++I G++  D++ 
Sbjct: 228 LRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMT 287

Query: 95  EARELFDKMFRPDLF-----SWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAM 146
           EA  LF  M    +      S A  +       +L    +L  LL       D    N++
Sbjct: 288 EAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSL 347

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDV 202
           ++ YAK G  NEA  L D +  K+ +S+ ++LSGY +NG+   A   F+ M+    + D+
Sbjct: 348 LSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDI 407

Query: 203 VSW-----------------------------------NLMLDGYVELDDLDSAWKFFQK 227
            +                                    N ++D Y +   +D + + F K
Sbjct: 408 ATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDK 467

Query: 228 IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEA 283
           +P +++VSW TM++GY  +G   EA  LF  M  +      V +  +IAA    G + E 
Sbjct: 468 MPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEG 527

Query: 284 ARLFIEMPERNPV-----SWTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISGYV 337
              F  M  +  +      +  M+D   R   LDEA + +  MP K ++    A++    
Sbjct: 528 KHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACR 587

Query: 338 QNKRMDEANQI---FDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
            +K +D   Q+     K+G      + ++   ++  GR DEA
Sbjct: 588 IHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEA 629



 Score = 80.5 bits (197), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 117/240 (48%), Gaps = 19/240 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP----Q 74
           N  ++   K+G + EA  +F +++ K+T++Y +++S Y +NG+  +A  +F++M     Q
Sbjct: 345 NSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQ 404

Query: 75  RNLVSWNSMIAGYLHNDKVKEAR----ELFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
            ++ +  S+I    H   ++  R     +  +    +      +I  Y + G ++ +R++
Sbjct: 405 PDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQV 464

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGE 186
           FD +P + D   WN M+AGY   G   EA  L  +M ++      V++  +++  + +G 
Sbjct: 465 FDKMPAR-DIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGL 523

Query: 187 MHLASKFFEAMEERDVV-----SWNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSWVTML 240
           +     +F+ M  +  +      +  M+D       LD A++F Q +P + +V  W  +L
Sbjct: 524 VTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALL 583


>gi|296084817|emb|CBI27699.3| unnamed protein product [Vitis vinifera]
          Length = 807

 Score =  351 bits (901), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 219/710 (30%), Positives = 366/710 (51%), Gaps = 49/710 (6%)

Query: 43  QKNTVTYNSMISAYAKNGRV-NDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFD 101
           + +T+  N++IS YAK G V +DA   F ++  +++VSWN++IAG+  N   +EA +LF 
Sbjct: 112 ESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFH 171

Query: 102 KMFR-PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
            M + P   ++A + +       LE+                     AGY + G      
Sbjct: 172 AMLKGPIQPNYATIASILPVCASLEEN--------------------AGY-RYGKEVHCH 210

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
            L      +++   NS++S Y + G+M  A   F  M+ RD+VSWN ++ GY    +   
Sbjct: 211 VLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNAIIAGYASNGEWLK 270

Query: 221 AWKFFQKIP-----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR------NVVAWNA 269
           A + F +       + + V+ V++L   A    +  A+ +   + IR      +    NA
Sbjct: 271 ALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYI-IRHPGLREDTSVGNA 329

Query: 270 MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
           +++ Y +    + A + F+ +  ++ +SW  ++D +           LL  M  + I   
Sbjct: 330 LLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLVNLLHWMLREGIRPD 389

Query: 330 TAMISGYVQN-------KRMDEANQIFDKIGT----HDVVCWNVMIKGYAQCGRMDEAIN 378
           +  I   +Q        K++ E +    + G           N M+  YA+CG M  A+N
Sbjct: 390 SITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQGDAGPTLGNGMLDAYAKCGNMKYAVN 449

Query: 379 LFRQMVNK-DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHL 437
           +F  +  K ++VT N+MI+GY      DDA  IF  M +  +  +WN ++  + +N+F  
Sbjct: 450 IFGSLSEKRNVVTCNSMISGYVNSSSHDDAYAIFNTMSET-DLTTWNLMVRVYAENDFPD 508

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
            AL +F  +  +G K D  T+   L ACAH+A++ + RQ H   I++ + ND+ +  + I
Sbjct: 509 QALSLFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHGYVIRACF-NDVRLNGAFI 567

Query: 498 TMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
            MY+KCG +  A  LF  +   D++ + +++ G+A++G   EA+++F  M+  GV PD V
Sbjct: 568 DMYSKCGSVFGAYKLFLSSPQKDLVMFTAMVGGFAMHGMGEEALRIFSYMLELGVKPDHV 627

Query: 558 TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKG 617
               VL ACSH GLVD G K+F  + +V+  +P +E YAC++DLL+R GR+ +A+  V  
Sbjct: 628 IITAVLFACSHAGLVDEGWKIFNSIEKVHGFQPTMEQYACVVDLLARGGRIKDAYTFVTR 687

Query: 618 MKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEV 677
           M I+ NA IWGTLLGACR H  ++LGR+  + L ++E      Y ++SN++A   RWD V
Sbjct: 688 MPIEANANIWGTLLGACRTHHEVELGRVVADHLFKIESDNIGNYVVMSNLYAADARWDGV 747

Query: 678 EKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
            ++R  M     +K  GCSWIEV  + + F++GD    + + I  TL TL
Sbjct: 748 MEIRRLMRTRELKKPAGCSWIEVGRRKNVFIAGDSSHPQRSIIYRTLSTL 797



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 186/380 (48%), Gaps = 25/380 (6%)

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR-NGRMLEARRLFDQMPIRNVVA 266
           +L+ Y +   LD   K F ++ +++ V W  +LSG A       E  RLF  M + N   
Sbjct: 19  LLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAK 78

Query: 267 WNAMIAAYV------QRGQIEEAARLFI--EMPERNPVSWTTMIDGYVRIAKL-DEARRL 317
            N++  A V       R    ++   ++     E + ++   +I  Y +   +  +A   
Sbjct: 79  PNSVTIAIVLPVCARLREDAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAA 138

Query: 318 LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD------------KIGTHDVVCWNVMIK 365
            +++ +K++ +  A+I+G+ +NK  +EA ++F              I +   VC ++   
Sbjct: 139 FNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEEN 198

Query: 366 GYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
              + G+      L R  + +D+   N++++ Y +I QM+ A  +F  M K R+ VSWNA
Sbjct: 199 AGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNM-KSRDLVSWNA 257

Query: 426 LISGFLQNEFHLDALKIFV-LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK- 483
           +I+G+  N   L AL++F   ++ E  K D  TL   L ACAH+  LQ+ + IH   I+ 
Sbjct: 258 IIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRH 317

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
            G   D  VGN+L++ YAKC   Q A   F      D+ISWN+++  +  +G  T  + L
Sbjct: 318 PGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLVNL 377

Query: 544 FEEMVMEGVAPDPVTFIGVL 563
              M+ EG+ PD +T + ++
Sbjct: 378 LHWMLREGIRPDSITILTII 397



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 146/328 (44%), Gaps = 33/328 (10%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQK-NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           N  +    K G ++ A+ IF  +S+K N VT NSMIS Y  +   +DA  +F  M + +L
Sbjct: 432 NGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVNSSSHDDAYAIFNTMSETDL 491

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDL 133
            +WN M+  Y  ND   +A  LF ++     +PD+ +   ++        +   R+    
Sbjct: 492 TTWNLMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHGY 551

Query: 134 LPNKEDTACWN------AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
           +      AC+N      A +  Y+K G+   A KL  + P K++V + +M+ G+  +G  
Sbjct: 552 VIR----ACFNDVRLNGAFIDMYSKCGSVFGAYKLFLSSPQKDLVMFTAMVGGFAMHGMG 607

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYV----ELDDLDSAWKFFQKIP-----EQNVVSWVT 238
             A + F  M E  V   ++++   +        +D  WK F  I      +  +  +  
Sbjct: 608 EEALRIFSYMLELGVKPDHVIITAVLFACSHAGLVDEGWKIFNSIEKVHGFQPTMEQYAC 667

Query: 239 MLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE----EAARLFIEMPER 293
           ++   AR GR+ +A     +MPI  N   W  ++ A     ++E     A  LF ++   
Sbjct: 668 VVDLLARGGRIKDAYTFVTRMPIEANANIWGTLLGACRTHHEVELGRVVADHLF-KIESD 726

Query: 294 NPVSWTTMIDGYVRIAKLD---EARRLL 318
           N  ++  M + Y   A+ D   E RRL+
Sbjct: 727 NIGNYVVMSNLYAADARWDGVMEIRRLM 754



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 116/228 (50%), Gaps = 8/228 (3%)

Query: 398 YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH-LDALKIFVLMTQEGK-KADH 455
           YA+   +D   K+F EM  +R+ V WN ++SG    + H  + +++F  M    + K + 
Sbjct: 23  YAKSGALDYCNKLFGEM-DQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAKPNS 81

Query: 456 STLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI-QNAELLFK 514
            T+A  L  CA L     G+ +H   IKSG  +    GN+LI+MYAKCG +  +A   F 
Sbjct: 82  VTIAIVLPVCARLRE-DAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFN 140

Query: 515 DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574
             +  DV+SWN++IAG++ N    EA KLF  M+   + P+  T   +L  C+ +    G
Sbjct: 141 RIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAG 200

Query: 575 GLKLFECMTEVYAIEPLVEHYACMIDLLS---RAGRLDEAFEMVKGMK 619
                E    V     LVE  + +  L+S   R G++++A  + + MK
Sbjct: 201 YRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMK 248



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 107/470 (22%), Positives = 187/470 (39%), Gaps = 102/470 (21%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM-------PQR-NLVS- 79
           G++E+A  +F  M  ++ V++N++I+ YA NG    A +LF +        P    LVS 
Sbjct: 235 GQMEKAEFLFRNMKSRDLVSWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSV 294

Query: 80  --------------------------------WNSMIAGYLHNDKVKEARELFDKMFRPD 107
                                            N++++ Y   +  + A + F  + R D
Sbjct: 295 LPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKD 354

Query: 108 LFSWALMITCYTRKG-----------------------------------ELEKAREL-- 130
           L SW  ++  +T  G                                    ++K +E   
Sbjct: 355 LISWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHS 414

Query: 131 ----FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK-NIVSWNSMLSGYTKNG 185
               F LL         N M+  YAK GN   A  +  ++  K N+V+ NSM+SGY  + 
Sbjct: 415 YSIRFGLLQGDAGPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVNSS 474

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLS 241
               A   F  M E D+ +WNLM+  Y E D  D A   F ++  Q    ++V+ +++L 
Sbjct: 475 SHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILP 534

Query: 242 GYARNGRMLEARRLFDQMPIR---NVVAWN-AMIAAYVQRGQIEEAARLFIEMPERNPVS 297
             A    +   R+    + IR   N V  N A I  Y + G +  A +LF+  P+++ V 
Sbjct: 535 ACAHMASVHMLRQCHGYV-IRACFNDVRLNGAFIDMYSKCGSVFGAYKLFLSSPQKDLVM 593

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYV----QNKRMDEANQIFDKI- 352
           +T M+ G+      +EA R+   M    +     +I+  +        +DE  +IF+ I 
Sbjct: 594 FTAMVGGFAMHGMGEEALRIFSYMLELGVKPDHVIITAVLFACSHAGLVDEGWKIFNSIE 653

Query: 353 ---GTHDVV-CWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAG 397
              G    +  +  ++   A+ GR+ +A     +M +  +   W T++  
Sbjct: 654 KVHGFQPTMEQYACVVDLLARGGRIKDAYTFVTRMPIEANANIWGTLLGA 703



 Score = 41.6 bits (96), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 496 LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYA-INGNATEAIKLFEEMVMEGVA- 553
           L+ +YAK G +     LF + D  D + WN +++G A    +  E ++LF  M M   A 
Sbjct: 19  LLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAK 78

Query: 554 PDPVTFIGVLSACSHV 569
           P+ VT   VL  C+ +
Sbjct: 79  PNSVTIAIVLPVCARL 94


>gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  351 bits (901), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 216/658 (32%), Positives = 336/658 (51%), Gaps = 93/658 (14%)

Query: 119 TRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSML 178
           ++ G +++AR+LFD +P + D   WN M++ YA +GN  EA+KL +  P KN ++W+S++
Sbjct: 48  SKNGRVDEARKLFDQMPYR-DKYTWNIMISAYANLGNLVEARKLFNETPIKNSITWSSLV 106

Query: 179 SGYTKNG----EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA---WKFFQKIP-E 230
           SGY KNG     +   S+ +   ++    +   +L     L  L +      +  KI  E
Sbjct: 107 SGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLE 166

Query: 231 QNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLFIE 289
            N+     ++  Y++   +LEA  LF  +P R N V W AM+  Y Q G+  +A + F E
Sbjct: 167 ANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKE 226

Query: 290 MP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK----NIAAQTAMISGYVQNKR 341
           M     E N  ++ +++     I+     R++   + +     N+  Q+A++  Y +   
Sbjct: 227 MRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGD 286

Query: 342 MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI------------- 388
           +  A  I D +   DVVCWN MI G    G M+EA+ LF +M N+DI             
Sbjct: 287 LASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKS 346

Query: 389 --------------------------VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
                                        N ++  YA+   +  A+ +F ++   ++ +S
Sbjct: 347 LASCKNLKIGESVHSLTIKTGFDACKTVSNALVDMYAKQGNLSCALDVFNKI-LDKDVIS 405

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482
           W +L++G++ N FH  AL++F  M       D   +AC  SACA L  ++ GRQ+H   I
Sbjct: 406 WTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVFSACAELTVIEFGRQVHANFI 465

Query: 483 KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIK 542
           KS   + L   NSLITMYAKCG +++A  +F   +  +VISW ++I GYA N        
Sbjct: 466 KSSAGSLLSAENSLITMYAKCGCLEDAIRVFDSMETRNVISWTAIIVGYAQN-------- 517

Query: 543 LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLL 602
                                      GLV+ G   FE M +VY I+P  +HYACMIDLL
Sbjct: 518 ---------------------------GLVETGQSYFESMEKVYGIKPASDHYACMIDLL 550

Query: 603 SRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYA 662
            RAG+++EA  ++  M ++P+A IW +LL ACR+H N++LG  A + L +LEP  +  Y 
Sbjct: 551 GRAGKINEAEHLLNRMDVEPDATIWKSLLSACRVHGNLELGERAGKNLIKLEPSNSLPYV 610

Query: 663 LLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           LLSNM + AGRW++   +R +M+  G  K+PG SWIE+K+Q+HTF+S D      AEI
Sbjct: 611 LLSNMFSVAGRWEDAAHIRRAMKTMGINKEPGYSWIEMKSQVHTFISEDRSHPLAAEI 668



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 152/599 (25%), Positives = 251/599 (41%), Gaps = 127/599 (21%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
            + N+ +++L K+GRV+EA K+F QM  ++  T+N MISAYA  G + +ARKLF + P +
Sbjct: 38  LDSNQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIK 97

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMF----RP---------------DLFSWALMIT 116
           N ++W+S+++GY  N    E    F +M+    +P                L     MI 
Sbjct: 98  NSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIH 157

Query: 117 CYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS-KNIVSWN 175
           CY  K +LE             +      +V  Y+K     EA+ L  ++P  KN V W 
Sbjct: 158 CYAIKIQLEA------------NIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWT 205

Query: 176 SMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP------ 229
           +ML+GY +NGE   A + F+ M  + + S +      +      SA+ F +++       
Sbjct: 206 AMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWS 265

Query: 230 --EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF 287
               NV     ++  YA+ G +  AR + D M I +VV WN+MI   V  G +EEA  LF
Sbjct: 266 GFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLF 325

Query: 288 IEMPER----NPVSWTTMIDGYVRIAKL---DEARRLLDQMPYKNI-AAQTAMISGYVQN 339
            +M  R    +  ++ +++        L   +    L  +  +        A++  Y + 
Sbjct: 326 HKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSNALVDMYAKQ 385

Query: 340 KRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKD-------- 387
             +  A  +F+KI   DV+ W  ++ GY   G  ++A+ LF  M    V+ D        
Sbjct: 386 GNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVF 445

Query: 388 ---------------------------IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
                                      +   N++I  YA+   ++DA+++F+ M + RN 
Sbjct: 446 SACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVFDSM-ETRNV 504

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQ-EGKKADHSTLACALSACAHLAALQLGRQIHH 479
           +SW A+I G+ QN         F  M +  G K      AC                   
Sbjct: 505 ISWTAIIVGYAQNGLVETGQSYFESMEKVYGIKPASDHYAC------------------- 545

Query: 480 LAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK--DADPVDVISWNSLIAGYAINGN 536
                           +I +  + G+I  AE L    D +P D   W SL++   ++GN
Sbjct: 546 ----------------MIDLLGRAGKINEAEHLLNRMDVEP-DATIWKSLLSACRVHGN 587



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 155/320 (48%), Gaps = 35/320 (10%)

Query: 332 MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTW 391
           ++S   +N R+DEA ++FD++   D   WN+MI  YA  G + EA  LF +   K+ +TW
Sbjct: 43  LLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIKNSITW 102

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
           +++++GY                                 +N   ++ L+ F  M  +G+
Sbjct: 103 SSLVSGYC--------------------------------KNGCEVEGLRQFSQMWSDGQ 130

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE- 510
           K    TL   L AC+ L+ L  G+ IH  AIK     ++FV   L+ MY+KC  +  AE 
Sbjct: 131 KPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEY 190

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
           L F   D  + + W +++ GYA NG + +AI+ F+EM  +G+  +  TF  +L+AC+ + 
Sbjct: 191 LFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSIS 250

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
               G ++  C+       P V   + ++D+ ++ G L  A  ++  M+I  +   W ++
Sbjct: 251 AYAFGRQVHGCIIWS-GFGPNVYVQSALVDMYAKCGDLASARMILDTMEID-DVVCWNSM 308

Query: 631 LGACRMHQNIKLGRIAVEKL 650
           +  C  H  ++   +   K+
Sbjct: 309 IVGCVTHGYMEEALVLFHKM 328



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 6/120 (5%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS +  +N  IT   K G +E+AI++F  M  +N +++ ++I  YA+NG V   +  FE 
Sbjct: 470 GSLLSAENSLITMYAKCGCLEDAIRVFDSMETRNVISWTAIIVGYAQNGLVETGQSYFES 529

Query: 72  MPQRNLVS-----WNSMIAGYLHNDKVKEARELFDKM-FRPDLFSWALMITCYTRKGELE 125
           M +   +      +  MI       K+ EA  L ++M   PD   W  +++     G LE
Sbjct: 530 MEKVYGIKPASDHYACMIDLLGRAGKINEAEHLLNRMDVEPDATIWKSLLSACRVHGNLE 589


>gi|168066429|ref|XP_001785140.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663262|gb|EDQ50036.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 922

 Score =  351 bits (901), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 222/724 (30%), Positives = 384/724 (53%), Gaps = 69/724 (9%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           N +IS Y+K G + DA  +F+ M  +++VSWN+MI+GY  + + +EA +LF +M     +
Sbjct: 90  NMLISMYSKCGSIEDANNVFQSMEDKDVVSWNAMISGYALHGRGQEAVDLFYQMQREGLK 149

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL 162
           P+  S+  +++       LE   ++   +     + D     A++  Y K G+   A+K+
Sbjct: 150 PNQNSFISILSACQTPIVLEFGEQIHSHITKAGYESDVNVSTALINMYCKCGSLELARKV 209

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSWNLMLDGYVELDDL 218
            + M  +N+VSW +M+SGY ++G+   A   F+ +     + + VS+  +L      +DL
Sbjct: 210 FNEMRERNVVSWTAMISGYVQHGDSKEAFVLFQKLIRSGTQPNKVSFASILGACTNPNDL 269

Query: 219 DSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
           +   K    I     EQ V+    ++S YAR G +  AR++FD +   N V+WNAMIA Y
Sbjct: 270 EQGLKLHAYIKQAGLEQEVLVGNALISMYARCGSLANARQVFDNLRSPNRVSWNAMIAGY 329

Query: 275 VQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYK----NI 326
            + G +EEA RLF +M ++    +  ++ +++      A L+  + L  Q+       ++
Sbjct: 330 GE-GFMEEAFRLFRDMQQKGFQPDRFTYASLLAICADRADLNRGKELHSQIVRTAWEADV 388

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
              TA+IS Y +   ++EA ++F+++   + V WN  I    + G   EA  +F+QM   
Sbjct: 389 TVATALISMYAKCGSLEEARKVFNQMPEKNAVSWNAFIACCCRHGSEKEAFQVFKQMRRD 448

Query: 387 DIVT------------------------------W---------NTMIAGYAQIRQMDDA 407
           D++                               W         N +I+ Y +  ++ DA
Sbjct: 449 DVIPDHVTFITLLNSCTSPEDFERGRYIHGKIDQWGMLSNNLVANALISMYGRCGKLADA 508

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
            ++F  + +RR+  SWNA+I+ ++Q+  +  A  +F+    EG K D  T    L A A+
Sbjct: 509 REVFYRI-RRRDLGSWNAMIAAYVQHGANGSAFDLFIKYKSEGGKGDKYTFINVLRAIAN 567

Query: 468 LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSL 527
           L  L  GR+IH L  K+G   D+ +  +LI MY+KCG +++A  +FK+    DV+ WN++
Sbjct: 568 LEDLDAGRKIHGLVEKAGLEKDIRILTTLIKMYSKCGSLRDAYSVFKNVQEKDVVCWNAM 627

Query: 528 IAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYA 587
           +A Y  + +  +A+KLF++M +EGV PD  T+  VL+AC+ +G ++ G K    + E  A
Sbjct: 628 LAAYNHSDHGQDALKLFQQMRLEGVNPDSATYTSVLNACARLGAIEHGKKFHTQLKEA-A 686

Query: 588 IEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAV 647
           +E    HYACM+  L RA  L EA E ++ +  + +A +W +LL ACR+H N+ L   AV
Sbjct: 687 METDTRHYACMVAALGRASLLKEAEEFIEEISSESDALMWESLLVACRIHHNVGLAETAV 746

Query: 648 EKLSELEPQKTS--CYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705
           E L +++ Q +   C  L+ N++A AGRW++V  ++ +M  +G      C+ IEV ++ H
Sbjct: 747 EHLLDVKAQSSPAVCEQLM-NIYAAAGRWEDVSVIKATMREAGLLAPKSCT-IEVNSEFH 804

Query: 706 TFLS 709
           TF++
Sbjct: 805 TFMT 808



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 153/563 (27%), Positives = 241/563 (42%), Gaps = 125/563 (22%)

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
           H+ S  FE     D+   N+++  Y +   ++ A   FQ + +++VVSW  M+SGYA +G
Sbjct: 76  HMRSAQFEP----DIYLNNMLISMYSKCGSIEDANNVFQSMEDKDVVSWNAMISGYALHG 131

Query: 248 RMLEARRLFDQM---------------------PI------------------RNVVAWN 268
           R  EA  LF QM                     PI                   +V    
Sbjct: 132 RGQEAVDLFYQMQREGLKPNQNSFISILSACQTPIVLEFGEQIHSHITKAGYESDVNVST 191

Query: 269 AMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM------P 322
           A+I  Y + G +E A ++F EM ERN VSWT MI GYV+     EA  L  ++      P
Sbjct: 192 ALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSKEAFVLFQKLIRSGTQP 251

Query: 323 YK---------------------------------NIAAQTAMISGYVQNKRMDEANQIF 349
            K                                  +    A+IS Y +   +  A Q+F
Sbjct: 252 NKVSFASILGACTNPNDLEQGLKLHAYIKQAGLEQEVLVGNALISMYARCGSLANARQVF 311

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----------------------- 386
           D + + + V WN MI GY + G M+EA  LFR M  K                       
Sbjct: 312 DNLRSPNRVSWNAMIAGYGE-GFMEEAFRLFRDMQQKGFQPDRFTYASLLAICADRADLN 370

Query: 387 ----------------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
                           D+     +I+ YA+   +++A K+F +M   +N VSWNA I+  
Sbjct: 371 RGKELHSQIVRTAWEADVTVATALISMYAKCGSLEEARKVFNQM-PEKNAVSWNAFIACC 429

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
            ++    +A ++F  M ++    DH T    L++C      + GR IH    + G +++ 
Sbjct: 430 CRHGSEKEAFQVFKQMRRDDVIPDHVTFITLLNSCTSPEDFERGRYIHGKIDQWGMLSNN 489

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME 550
            V N+LI+MY +CG++ +A  +F      D+ SWN++IA Y  +G    A  LF +   E
Sbjct: 490 LVANALISMYGRCGKLADAREVFYRIRRRDLGSWNAMIAAYVQHGANGSAFDLFIKYKSE 549

Query: 551 GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDE 610
           G   D  TFI VL A +++  +D G K+   + E   +E  +     +I + S+ G L +
Sbjct: 550 GGKGDKYTFINVLRAIANLEDLDAGRKI-HGLVEKAGLEKDIRILTTLIKMYSKCGSLRD 608

Query: 611 AFEMVKGMKIKPNAGIWGTLLGA 633
           A+ + K ++ K +   W  +L A
Sbjct: 609 AYSVFKNVQEK-DVVCWNAMLAA 630



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/379 (28%), Positives = 179/379 (47%), Gaps = 47/379 (12%)

Query: 306 VRIAKLDEARRLLDQMPY----KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWN 361
           V+   L E +++ D M       +I     +IS Y +   +++AN +F  +   DVV WN
Sbjct: 62  VQAKSLAEGKKVHDHMRSAQFEPDIYLNNMLISMYSKCGSIEDANNVFQSMEDKDVVSWN 121

Query: 362 VMIKGYAQCGRMDEAINLFRQM-------------------------------------- 383
            MI GYA  GR  EA++LF QM                                      
Sbjct: 122 AMISGYALHGRGQEAVDLFYQMQREGLKPNQNSFISILSACQTPIVLEFGEQIHSHITKA 181

Query: 384 -VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI 442
               D+     +I  Y +   ++ A K+F EM + RN VSW A+ISG++Q+    +A  +
Sbjct: 182 GYESDVNVSTALINMYCKCGSLELARKVFNEM-RERNVVSWTAMISGYVQHGDSKEAFVL 240

Query: 443 FVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
           F  + + G + +  + A  L AC +   L+ G ++H    ++G   ++ VGN+LI+MYA+
Sbjct: 241 FQKLIRSGTQPNKVSFASILGACTNPNDLEQGLKLHAYIKQAGLEQEVLVGNALISMYAR 300

Query: 503 CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
           CG + NA  +F +    + +SWN++IAGY   G   EA +LF +M  +G  PD  T+  +
Sbjct: 301 CGSLANARQVFDNLRSPNRVSWNAMIAGYG-EGFMEEAFRLFRDMQQKGFQPDRFTYASL 359

Query: 563 LSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKP 622
           L+ C+    ++ G +L   +    A E  V     +I + ++ G L+EA ++   M  K 
Sbjct: 360 LAICADRADLNRGKELHSQIVRT-AWEADVTVATALISMYAKCGSLEEARKVFNQMPEK- 417

Query: 623 NAGIWGTLLGACRMHQNIK 641
           NA  W   +  C  H + K
Sbjct: 418 NAVSWNAFIACCCRHGSEK 436



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 183/382 (47%), Gaps = 71/382 (18%)

Query: 337 VQNKRMDEANQIFDKIGT----HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWN 392
           VQ K + E  ++ D + +     D+   N++I  Y++CG +++A N+F+ M +KD+V+WN
Sbjct: 62  VQAKSLAEGKKVHDHMRSAQFEPDIYLNNMLISMYSKCGSIEDANNVFQSMEDKDVVSWN 121

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
            MI+GYA   +  +AV +F +                                M +EG K
Sbjct: 122 AMISGYALHGRGQEAVDLFYQ--------------------------------MQREGLK 149

Query: 453 ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512
            + ++    LSAC     L+ G QIH    K+GY +D+ V  +LI MY KCG ++ A  +
Sbjct: 150 PNQNSFISILSACQTPIVLEFGEQIHSHITKAGYESDVNVSTALINMYCKCGSLELARKV 209

Query: 513 FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
           F +    +V+SW ++I+GY  +G++ EA  LF++++  G  P+ V+F  +L AC++   +
Sbjct: 210 FNEMRERNVVSWTAMISGYVQHGDSKEAFVLFQKLIRSGTQPNKVSFASILGACTNPNDL 269

Query: 573 DGGLKLFECMT------EVYAIEPLVEHYA-C--------MIDLLSRAGR---------- 607
           + GLKL   +       EV     L+  YA C        + D L    R          
Sbjct: 270 EQGLKLHAYIKQAGLEQEVLVGNALISMYARCGSLANARQVFDNLRSPNRVSWNAMIAGY 329

Query: 608 ----LDEAFEMVKGMKIK---PNAGIWGTLLGACRMHQNIKLGRIAVEKL--SELEPQKT 658
               ++EAF + + M+ K   P+   + +LL  C    ++  G+    ++  +  E   T
Sbjct: 330 GEGFMEEAFRLFRDMQQKGFQPDRFTYASLLAICADRADLNRGKELHSQIVRTAWEADVT 389

Query: 659 SCYALLSNMHAEAGRWDEVEKV 680
              AL+S M+A+ G  +E  KV
Sbjct: 390 VATALIS-MYAKCGSLEEARKV 410



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 122/222 (54%), Gaps = 4/222 (1%)

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG 504
           L+ + G +A+ +  A  L  C    +L  G+++H     + +  D+++ N LI+MY+KCG
Sbjct: 41  LLGKRGVQANLNFYARRLQECVQAKSLAEGKKVHDHMRSAQFEPDIYLNNMLISMYSKCG 100

Query: 505 RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLS 564
            I++A  +F+  +  DV+SWN++I+GYA++G   EA+ LF +M  EG+ P+  +FI +LS
Sbjct: 101 SIEDANNVFQSMEDKDVVSWNAMISGYALHGRGQEAVDLFYQMQREGLKPNQNSFISILS 160

Query: 565 ACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNA 624
           AC    +++ G ++   +T+    E  V     +I++  + G L+ A ++   M+ + N 
Sbjct: 161 ACQTPIVLEFGEQIHSHITKA-GYESDVNVSTALINMYCKCGSLELARKVFNEMRER-NV 218

Query: 625 GIWGTLLGACRMHQNIKLGRIAVEKL--SELEPQKTSCYALL 664
             W  ++     H + K   +  +KL  S  +P K S  ++L
Sbjct: 219 VSWTAMISGYVQHGDSKEAFVLFQKLIRSGTQPNKVSFASIL 260


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  351 bits (901), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 206/605 (34%), Positives = 318/605 (52%), Gaps = 52/605 (8%)

Query: 148 AGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER-----DV 202
           A  +   + + A+++ D +P  N+ +WN+++  Y  +   H +   F  M  +     D 
Sbjct: 77  AALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDK 136

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR 262
            ++  ++    EL++L                      +G A +G +++     D     
Sbjct: 137 FTFPFLIKAASELEEL---------------------FTGKAFHGMVIKVLLGSD----- 170

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
            V   N++I  Y + G++    R+F+ +P R+ VSW +MI  +V+    +EA  L  +M 
Sbjct: 171 -VFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEME 229

Query: 323 YKNIAAQTAMISGYVQN--KRMD-----------EANQIFDKIGTHDVVCWNVMIKGYAQ 369
            +N+      + G +    K+ D           E N+I + +        N M+  Y +
Sbjct: 230 TQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLS-----NAMLDMYTK 284

Query: 370 CGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
           CG +++A  LF +M  KDIV+W TM+ GYA+I + D A  IF+ M   ++  +WNALIS 
Sbjct: 285 CGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAM-PNQDIAAWNALISA 343

Query: 430 FLQNEFHLDALKIF-VLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
           + Q     +AL++F  L   +  K D  TL   LSACA L A+ LG  IH    K G   
Sbjct: 344 YEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKL 403

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           +  +  SLI MY KCG +Q A ++F   +  DV  W+++IAG A++G+  +AI LF +M 
Sbjct: 404 NCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQ 463

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
            + V P+ VTF  +L ACSHVGLV+ G   F  M  VY + P V+HYACM+D+L RAG L
Sbjct: 464 EDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLL 523

Query: 609 DEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMH 668
           +EA E+++ M + P A +WG LLGAC +H+N+ L   A  +L ELEP     Y LLSN++
Sbjct: 524 EEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIY 583

Query: 669 AEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLA 728
           A+AG+WD V  +R  M   G +K+PGCS IEV   +H FL GD       +I   L  + 
Sbjct: 584 AKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIV 643

Query: 729 AQIRN 733
           A++  
Sbjct: 644 ARLET 648



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 111/465 (23%), Positives = 214/465 (46%), Gaps = 66/465 (14%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQK----NTVTYNSMISAYAKNG--RVNDARKLF 69
           F  +  ++ + +    ++  +I +QM +     +  + + +I+A A +    ++ A+++F
Sbjct: 33  FANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVF 92

Query: 70  EQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGEL 124
           +Q+P  NL +WN++I  Y  +    ++  +F +M       PD F++  +I   +   EL
Sbjct: 93  DQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEEL 152

Query: 125 EKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
              +    ++       D    N+++  YAK G      ++   +P +++VSWNSM++ +
Sbjct: 153 FTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAF 212

Query: 182 TKNGEMHLASKFFEAMEERDVVS----------------------W-------------- 205
            + G    A + F+ ME ++V                        W              
Sbjct: 213 VQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESL 272

Query: 206 ---NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR 262
              N MLD Y +   ++ A + F K+PE+++VSW TML GYA+ G    A+ +FD MP +
Sbjct: 273 TLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQ 332

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEM-----PERNPVSWTTMIDGYVRIAKLDEAR-- 315
           ++ AWNA+I+AY Q G+ +EA  LF E+      + + V+  + +    ++  +D     
Sbjct: 333 DIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWI 392

Query: 316 --RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRM 373
              +  Q    N    T++I  Y +   + +A  +F  +   DV  W+ MI G A  G  
Sbjct: 393 HVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHG 452

Query: 374 DEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            +AI LF +M    V  + VT+  ++   + +  +++    F +M
Sbjct: 453 KDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQM 497



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 184/400 (46%), Gaps = 50/400 (12%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           NS+I  YAK G +    ++F  +P+R++VSWNSMI  ++     +EA ELF +M     +
Sbjct: 175 NSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVK 234

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKL 162
           P+  +   +++   +K + E  R +   +      E     NAM+  Y K G+  +AK+L
Sbjct: 235 PNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRL 294

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAW 222
            D MP K+IVSW +ML GY K GE   A   F+AM  +D+ +WN ++  Y +      A 
Sbjct: 295 FDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEAL 354

Query: 223 KFFQ-----KIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR 277
           + F      K  + + V+ V+ LS  A+ G M             ++  W   I  Y+++
Sbjct: 355 ELFHELQLSKTAKPDEVTLVSTLSACAQLGAM-------------DLGGW---IHVYIKK 398

Query: 278 GQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYV 337
             ++    L            T++ID Y +   L +A  +   +  K++   +AMI+G  
Sbjct: 399 QGMKLNCHL-----------TTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLA 447

Query: 338 QNKRMDEANQIF-----DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-----VNKD 387
            +    +A  +F     DK+  + V   N++    +  G ++E    F QM     V   
Sbjct: 448 MHGHGKDAIALFSKMQEDKVKPNAVTFTNILC-ACSHVGLVEEGRTFFNQMELVYGVLPG 506

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
           +  +  M+    +   +++AV++ E+M        W AL+
Sbjct: 507 VKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALL 546



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 163/342 (47%), Gaps = 44/342 (12%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS VF  N  I    K G +    ++F  + +++ V++NSMI+A+ + G   +A +LF++
Sbjct: 168 GSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQE 227

Query: 72  MPQRNL-------------------VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWA 112
           M  +N+                     +   +  Y+  +++ E+  L +           
Sbjct: 228 METQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNA---------- 277

Query: 113 LMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV 172
            M+  YT+ G +E A+ LFD +P K D   W  M+ GYAKIG Y+ A+ + DAMP+++I 
Sbjct: 278 -MLDMYTKCGSVEDAKRLFDKMPEK-DIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIA 335

Query: 173 SWNSMLSGYTKNGEMHLASKFFEAME-----ERDVVSWNLMLDGYVELDDLDSAWKFFQK 227
           +WN+++S Y + G+   A + F  ++     + D V+    L    +L  +D        
Sbjct: 336 AWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVY 395

Query: 228 IPEQ----NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEA 283
           I +Q    N     +++  Y + G + +A  +F  +  ++V  W+AMIA     G  ++A
Sbjct: 396 IKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDA 455

Query: 284 ARLFIEMPE----RNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
             LF +M E     N V++T ++     +  ++E R   +QM
Sbjct: 456 IALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQM 497



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 147/320 (45%), Gaps = 21/320 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +    K G VE+A ++F +M +K+ V++ +M+  YAK G  + A+ +F+ MP +++ 
Sbjct: 276 NAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIA 335

Query: 79  SWNSMIAGYLHNDKVKEARELF-----DKMFRPDLFSWALMITCYTRKGELEKARELFDL 133
           +WN++I+ Y    K KEA ELF      K  +PD  +    ++   + G ++    +   
Sbjct: 336 AWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVY 395

Query: 134 LPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           +     K +     +++  Y K G+  +A  +  ++  K++  W++M++G   +G    A
Sbjct: 396 IKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDA 455

Query: 191 SKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIP-----EQNVVSWVTMLS 241
              F  M+E  V    V++  +L     +  ++    FF ++         V  +  M+ 
Sbjct: 456 IALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVD 515

Query: 242 GYARNGRMLEARRLFDQMPIRNVVA-WNAMIAAYVQRGQI---EEAARLFIEMPERNPVS 297
              R G + EA  L ++MP+    + W A++ A      +   E+A    IE+   N  +
Sbjct: 516 ILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGA 575

Query: 298 WTTMIDGYVRIAKLDEARRL 317
           +  + + Y +  K D    L
Sbjct: 576 YVLLSNIYAKAGKWDRVSGL 595



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 42/229 (18%)

Query: 453 ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYA--KCGRIQNAE 510
           A+H TL+  +  C+    L   +QIH   +++G   D F  + LIT  A      +  A+
Sbjct: 34  ANHPTLS-LIDQCSETKQL---KQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQ 89

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA-PDPVTFIGVLSACSHV 569
            +F      ++ +WN+LI  YA + N  +++ +F  M+ +    PD  TF  ++ A S +
Sbjct: 90  QVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASEL 149

Query: 570 GLVDGGLKLFECM-------TEVYAIEPLVEHYA------------------------CM 598
             +  G K F  M       ++V+ +  L+  YA                         M
Sbjct: 150 EELFTG-KAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSM 208

Query: 599 IDLLSRAGRLDEAFEMVKGMK---IKPNAGIWGTLLGACRMHQNIKLGR 644
           I    + G  +EA E+ + M+   +KPN      +L AC    + + GR
Sbjct: 209 ITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGR 257


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  351 bits (901), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 203/566 (35%), Positives = 308/566 (54%), Gaps = 50/566 (8%)

Query: 218 LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM-------------PI--- 261
           LD A K F +IP  N+ +W T++  +A + + ++   +F QM             P    
Sbjct: 80  LDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIK 139

Query: 262 ------------------------RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
                                    ++   N++I  Y   G ++ A  +F ++ E++ VS
Sbjct: 140 AATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVS 199

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQN--KRMDE-----ANQIFD 350
           W +MI G+V+    +EA +L  +M  +N       + G +    KR+D      A    +
Sbjct: 200 WNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIE 259

Query: 351 KIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVK 409
           + G   +++  N M+  Y +CG +++A  LF +M  KDIV+W TMI GYA++   D A +
Sbjct: 260 RNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARR 319

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV-LMTQEGKKADHSTLACALSACAHL 468
           +F+ M  R +  +WNALIS + QN    +AL IF  L   +  K +  TLA  L+ACA L
Sbjct: 320 VFDVM-PREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQL 378

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
            A+ LG  IH    K G   +  +  SLI MY+KCG ++ A  +F   +  DV  W+++I
Sbjct: 379 GAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMI 438

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI 588
           AG A++G+   AI LF +M    V P+ VTF  +L ACSH GLVD G   F  M  VY +
Sbjct: 439 AGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGV 498

Query: 589 EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVE 648
            P  +HYACM+D+L RAG L+EA E+++ M I P+A +WG LLGACR++ N++L  +A  
Sbjct: 499 VPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACS 558

Query: 649 KLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFL 708
           +L E +      Y LLSN++A+AG+WD V ++R  M+ SG +K+PGCS IEV   IH FL
Sbjct: 559 RLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFL 618

Query: 709 SGDPKQCRTAEICNTLKTLAAQIRNT 734
            GD     + EI + L  + A+I++T
Sbjct: 619 VGDNSHPLSTEIYSKLDEIVARIKST 644



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 197/420 (46%), Gaps = 60/420 (14%)

Query: 55  AYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLF 109
           A +    ++ A K+F+Q+P+ NL +WN++I  +  + K  +   +F +M       P+ +
Sbjct: 73  ALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSY 132

Query: 110 SWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           ++  +I   T    L   + +  ++       D    N+++  Y+ +G+ + A  +   +
Sbjct: 133 TFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKI 192

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAME---------------------------- 198
             K+IVSWNSM+SG+ + G    A + F+ M+                            
Sbjct: 193 VEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGR 252

Query: 199 ------ERDVVSWNL-----MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
                 ER+ +  NL     MLD YV+   L+ A + F K+ E+++VSW TM+ GYA+ G
Sbjct: 253 WACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVG 312

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM-----PERNPVSWTTMI 302
               ARR+FD MP  ++ AWNA+I++Y Q G+ +EA  +F E+      + N V+  + +
Sbjct: 313 DYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTL 372

Query: 303 DGYVRIAKLDEAR----RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV 358
               ++  +D        +  Q    N    T++I  Y +   +++A ++F  +   DV 
Sbjct: 373 AACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVF 432

Query: 359 CWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            W+ MI G A  G    AI+LF +M    V  + VT+  ++   +    +D+    F +M
Sbjct: 433 VWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQM 492



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 175/379 (46%), Gaps = 64/379 (16%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
           MKAS       GS +F  N  I      G ++ A  +FS++ +K+ V++NSMIS + + G
Sbjct: 158 MKASF------GSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGG 211

Query: 61  RVNDARKLFEQM------PQR---------------------------------NLVSWN 81
              +A +LF++M      P R                                 NL+  N
Sbjct: 212 SPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSN 271

Query: 82  SMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTA 141
           +M+  Y+    +++AR LFDKM   D+ SW  MI  Y + G+ + AR +FD++P +ED  
Sbjct: 272 AMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMP-REDIT 330

Query: 142 CWNAMVAGYAKIGNYNEAKKL-----LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEA 196
            WNA+++ Y + G   EA  +     L+     N V+  S L+   + G M L       
Sbjct: 331 AWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVY 390

Query: 197 MEERDV-VSWNL---MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA 252
           ++++ + +++++   ++D Y +   L+ A + F  +  ++V  W  M++G A +G    A
Sbjct: 391 IKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAA 450

Query: 253 RRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEM-PERNPVS----WTTMID 303
             LF +M       N V +  ++ A    G ++E    F +M P    V     +  M+D
Sbjct: 451 IDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVD 510

Query: 304 GYVRIAKLDEARRLLDQMP 322
              R   L+EA  L+++MP
Sbjct: 511 ILGRAGCLEEAVELIEKMP 529



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 90/190 (47%), Gaps = 14/190 (7%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR----NL 77
           I    K G +E+A+++F  + +++   +++MI+  A +G    A  LF +M +     N 
Sbjct: 407 IDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNA 466

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFD 132
           V++ +++    H+  V E R  F++M       P    +A M+    R G LE+A EL +
Sbjct: 467 VTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIE 526

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNEAK----KLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
            +P     + W A++      GN   A+    +LL+   S N  ++  + + Y K G+  
Sbjct: 527 KMPIVPSASVWGALLGACRIYGNVELAEMACSRLLET-DSNNHGAYVLLSNIYAKAGKWD 585

Query: 189 LASKFFEAME 198
             S+  + M+
Sbjct: 586 CVSRLRQHMK 595


>gi|125603224|gb|EAZ42549.1| hypothetical protein OsJ_27115 [Oryza sativa Japonica Group]
          Length = 696

 Score =  351 bits (900), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 211/651 (32%), Positives = 334/651 (51%), Gaps = 65/651 (9%)

Query: 140 TACWNAMVAGYAKIG--NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
           T  WN ++  Y++        A+++ D +P ++ VSWN++L+    +G    A +   AM
Sbjct: 25  TTPWNQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQAASGAHPEAWRLLRAM 84

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPE--------QNVVSWVTMLSGYARNGRM 249
             + + S    L   +    +        ++           NV +   +L  YA+ GR+
Sbjct: 85  HAQGLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRV 144

Query: 250 LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIA 309
            +AR++FD MP RN V+WNA+IA Y + G +  A  LF+EM ER  ++        +  A
Sbjct: 145 RDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEM-EREGLAPDEATFASLLTA 203

Query: 310 KLDEARRLLDQMPYKNIAAQTAM--------ISGYVQNKRMDEANQIFDKIG-THDVVCW 360
               +  L+ Q+  K +   +A+        I+ Y Q   + ++ +IFD IG   D++ W
Sbjct: 204 VEGPSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDLISW 263

Query: 361 NVMIKGYAQCGRMDEAINLFRQM-----VNKDIVTW------------------------ 391
           N M+  Y   G  DEA+  F +M     V+ D+ ++                        
Sbjct: 264 NAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLV 323

Query: 392 ------------NTMIAGYAQIRQ---MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
                       N +IA Y +  +   M+DA K F  +   ++TVSWN++++G+ Q+   
Sbjct: 324 IKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSL-VLKDTVSWNSMLTGYSQHGLS 382

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSL 496
            DALK F  M  E  + D    + AL + + LA LQLG+QIH L I SG+ ++ FV +SL
Sbjct: 383 ADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFVSSSL 442

Query: 497 ITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
           I MY+K G I +A   F++AD    + WN++I GYA +G A     LF EM+      D 
Sbjct: 443 IFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDH 502

Query: 557 VTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVK 616
           +TF+G++++CSH GLVD G ++   M   Y +   +EHYAC +DL  RAG+LD+A +++ 
Sbjct: 503 ITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAKKLID 562

Query: 617 GMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDE 676
            M  +P+A +W TLLGACR+H N++L       L   EP++ S Y LLS+M++  G W +
Sbjct: 563 SMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYVLLSSMYSGLGMWSD 622

Query: 677 VEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
              V+  M+  G  K PG SWIEVKN++H+F + D    +  EI   L+ L
Sbjct: 623 RATVQRVMKKRGLSKVPGWSWIEVKNEVHSFNAEDKSHPKMDEIYEMLRVL 673



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 141/571 (24%), Positives = 263/571 (46%), Gaps = 74/571 (12%)

Query: 38  FSQMSQKNTVTYNSMISAYAKNGR--VNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKE 95
           F +     T  +N +++AY+++    +  AR++F+++P+R+ VSWN+++A    +    E
Sbjct: 17  FPKSGSCATTPWNQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQAASGAHPE 76

Query: 96  ARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN-------KEDTACWNAMVA 148
           A  L   M    L S    +    R   + +   +   L +         +    +A++ 
Sbjct: 77  AWRLLRAMHAQGLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLD 136

Query: 149 GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLM 208
            YAK G   +A+++ D MP +N VSWN++++GYT++G+M  A + F  ME   +      
Sbjct: 137 VYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEAT 196

Query: 209 LDGYVELDDLDSAWKFFQ---KIPEQNVVSWVTML----SGYARNGRMLEARRLFDQM-P 260
               +   +  S +   Q   KI +      +T+L    + Y++ G + ++RR+FD +  
Sbjct: 197 FASLLTAVEGPSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGD 256

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-----SWTTMIDGYVRIAKLDEAR 315
           IR++++WNAM+ AY   G  +EA + F+ M + + V     S+T++I         D   
Sbjct: 257 IRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQG 316

Query: 316 RLLDQMPYKN--------IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367
           R++  +  K+          A  AM + Y +N  M++A + F+ +   D V WN M+ GY
Sbjct: 317 RVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGY 376

Query: 368 AQCGRMDEAINLFRQMVNKDIVT------------------------------------- 390
           +Q G   +A+  FR M ++++ T                                     
Sbjct: 377 SQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASND 436

Query: 391 --WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
              +++I  Y++   +DDA K FEE  K  ++V WNA+I G+ Q+    +   +F  M Q
Sbjct: 437 FVSSSLIFMYSKSGIIDDARKSFEEADK-SSSVPWNAMIFGYAQHGQAENVDILFNEMLQ 495

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQI-HHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
                DH T    +++C+H   +  G +I + +  K G    +      + +Y + G++ 
Sbjct: 496 RKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLD 555

Query: 508 NAELLFKDADPV--DVISWNSLIAGYAINGN 536
            A+ L  D+ P   D + W +L+    I+GN
Sbjct: 556 KAKKLI-DSMPFEPDAMVWMTLLGACRIHGN 585



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 104/458 (22%), Positives = 202/458 (44%), Gaps = 53/458 (11%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  +  +    K GRV +A ++F  M ++NTV++N++I+ Y ++G +  A +LF +M +
Sbjct: 128 VFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMER 187

Query: 75  RNLVSWNSMIAGY--------------LHNDKVKEARELFDKMFRPDLFSWALMITCYTR 120
             L    +  A                LH   VK    L        L      IT Y++
Sbjct: 188 EGLAPDEATFASLLTAVEGPSCFLMHQLHGKIVKYGSAL-------GLTVLNAAITAYSQ 240

Query: 121 KGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK-----NIVSWN 175
            G L+ +R +FD + +  D   WNAM+  Y   G  +EA K    M  +     ++ S+ 
Sbjct: 241 CGSLKDSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFT 300

Query: 176 SMLSGYTKNGEMHLASKFFEAMEERDVVS-----WNLMLDGYVELDD---LDSAWKFFQK 227
           S++S  +++G      +    +  +  +       N ++  Y   ++   ++ A+K F  
Sbjct: 301 SIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNS 360

Query: 228 IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMI-----AAYVQRG 278
           +  ++ VSW +ML+GY+++G   +A + F  M   NV     A++A +      A +Q G
Sbjct: 361 LVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLG 420

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
           +      +       + VS +++I  Y +   +D+AR+  ++    +     AMI GY Q
Sbjct: 421 KQIHGLVIHSGFASNDFVS-SSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQ 479

Query: 339 NKRMDEANQIFDKI----GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT---- 390
           + + +  + +F+++       D + +  +I   +  G +DE   +   M  K  V     
Sbjct: 480 HGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRME 539

Query: 391 -WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
            +   +  Y +  Q+D A K+ + M    + + W  L+
Sbjct: 540 HYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLL 577


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  351 bits (900), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 230/706 (32%), Positives = 371/706 (52%), Gaps = 84/706 (11%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----R 105
           N+++S + + G V +A  +F +M +R+L SWN ++ GY       EA  L+ ++     R
Sbjct: 73  NALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIR 132

Query: 106 PDLFSWALMITCYTRKGELEKAREL------FDLLPNKEDTACWNAMVAGYAKIGNYNEA 159
           PD++++  ++       +L + RE+      FD      D    NA++  Y K G+   A
Sbjct: 133 PDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDF---DMDVDVVNALITMYVKCGDVVSA 189

Query: 160 KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLD 219
           + L D MP+++ +SWN+M+SGY +N E     + F  M E       L +D      DL 
Sbjct: 190 RMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRE-------LSID-----PDL- 236

Query: 220 SAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA---RRLFDQMPIRNVVAWNAMIAAYVQ 276
                   +   +V+S   +L G  R G  L +   R  +D     N+  +N++I  Y+ 
Sbjct: 237 --------MTMTSVISACELL-GDERLGTQLHSYVVRTAYDG----NISVYNSLIQMYLS 283

Query: 277 RGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA------RRLLDQMPYK-NIAAQ 329
            G  +EA  +F  M  R+ VSWTT+I G V     D+A        +   MP +  IA+ 
Sbjct: 284 VGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASV 343

Query: 330 TAMISGYVQNKRMDEANQIFDKIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
            +  +   Q     + +++ ++ G    VV  N +I  Y++C R+++A+ +F Q+ +KD+
Sbjct: 344 LSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDV 403

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
           ++W ++I G                   R N   + ALI       F    LK       
Sbjct: 404 ISWTSVINGL------------------RINNRCFEALIF------FRKMILK------- 432

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
              K +  TL  ALSACA + AL  G++IH  A+K+G   D F+ N+++ +Y +CGR++ 
Sbjct: 433 --SKPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRT 490

Query: 509 AELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
           A   F + +  DV +WN L+ GYA  G     ++LF+ MV   + PD VTFI +L ACS 
Sbjct: 491 ALNQF-NLNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSR 549

Query: 569 VGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWG 628
            G+V  GL+ F+ M   Y I P ++HYAC++DLL RAG+L+EA E ++ M IKP+  IWG
Sbjct: 550 SGMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWG 609

Query: 629 TLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688
            LL ACR+H+++ LG +A + + + + +    Y LL N++A++G+WDEV KVR +M+  G
Sbjct: 610 ALLNACRIHRHVLLGELAAQHIFKQDAESIGYYILLCNLYADSGKWDEVAKVRRTMKEEG 669

Query: 689 AQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNT 734
               PGCSW+EVK ++H FLSGD    +  EI   L+    +++ +
Sbjct: 670 LIVDPGCSWVEVKGKVHAFLSGDNFHPQMQEINVVLEGFYEKMKTS 715



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 190/399 (47%), Gaps = 58/399 (14%)

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPE-RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK-- 324
           N+ +      G +E+A +    M E + PV      D +V + +L E +R   +  Y   
Sbjct: 2   NSRLLQLCLSGNLEQALKHLASMQEVKIPVEE----DCFVALIRLCENKRGYSEGEYVWK 57

Query: 325 ----------NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMD 374
                     ++    A++S +V+   +  A  +F ++G  D+  WNV++ GY + G  D
Sbjct: 58  AVLSSLVTLLSVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFD 117

Query: 375 EAINLFRQM----VNKDIVTW-----------------------------------NTMI 395
           EA+ L+ ++    +  D+ T+                                   N +I
Sbjct: 118 EALCLYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALI 177

Query: 396 AGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADH 455
             Y +   +  A  +F++M   R+ +SWNA+ISG+ +N+  L+ L++F  M +     D 
Sbjct: 178 TMYVKCGDVVSARMLFDKM-PTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDL 236

Query: 456 STLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD 515
            T+   +SAC  L   +LG Q+H   +++ Y  ++ V NSLI MY   G  + AE +F  
Sbjct: 237 MTMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSG 296

Query: 516 ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
            +  DV+SW ++I+G   N    +A++ ++ M + G  PD VT   VLSAC+ +G +D G
Sbjct: 297 MECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMG 356

Query: 576 LKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEM 614
           +KL E       I  +V   + +ID+ S+  R+++A E+
Sbjct: 357 MKLHELAERTGHILYVVVANS-LIDMYSKCKRIEKALEI 394



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 91/409 (22%), Positives = 169/409 (41%), Gaps = 69/409 (16%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           N   YNS+I  Y   G   +A  +F  M  R++VSW ++I+G + N    +A E +  M 
Sbjct: 270 NISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTME 329

Query: 104 ---FRPDLFSWALMITCYTRKGELEKARELFDLLPNKED---TACWNAMVAGYAKIGNYN 157
                PD  + A +++     G+L+   +L +L             N+++  Y+K     
Sbjct: 330 ITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIE 389

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----------------- 200
           +A ++   +P K+++SW S+++G   N     A  FF  M  +                 
Sbjct: 390 KALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKSKPNSVTLISALSACAR 449

Query: 201 ---------------------DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTM 239
                                D    N +LD YV    + +A   F  + E++V +W  +
Sbjct: 450 VGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTALNQFN-LNEKDVGAWNIL 508

Query: 240 LSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
           L+GYA+ G+      LF +M    +    V + +++ A  + G + E    F  M     
Sbjct: 509 LTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYH 568

Query: 296 VS-----WTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRM----DEA 345
           ++     +  ++D   R  KL+EA   +++MP K + A   A+++    ++ +      A
Sbjct: 569 ITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGALLNACRIHRHVLLGELAA 628

Query: 346 NQIF----DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
             IF    + IG + ++C       YA  G+ DE   + R M  + ++ 
Sbjct: 629 QHIFKQDAESIGYYILLC-----NLYADSGKWDEVAKVRRTMKEEGLIV 672



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 146/325 (44%), Gaps = 51/325 (15%)

Query: 29  GRVEEAIKIFSQMSQKNTVTY----NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMI 84
           G+++  +K+     +   + Y    NS+I  Y+K  R+  A ++F Q+P ++++SW S+I
Sbjct: 351 GQLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVI 410

Query: 85  AGYLHNDKVKEARELFDKMF---RPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTA 141
            G   N++  EA   F KM    +P+  +    ++   R G L   +E+           
Sbjct: 411 NGLRINNRCFEALIFFRKMILKSKPNSVTLISALSACARVGALMCGKEIHA--------- 461

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
             +A+ AG    G           +P       N++L  Y + G M  A   F  + E+D
Sbjct: 462 --HALKAGMGFDG----------FLP-------NAILDLYVRCGRMRTALNQFN-LNEKD 501

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFD 257
           V +WN++L GY +        + F+++ E  +    V+++++L   +R+G + E    F 
Sbjct: 502 VGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQ 561

Query: 258 QMPIR-----NVVAWNAMIAAYVQRGQIEEAARLFIEMPER-NPVSWTTMIDGYVRIAKL 311
           +M +      N+  +  ++    + G++ EA      MP + +P  W  +++   RI + 
Sbjct: 562 RMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGALLNA-CRIHR- 619

Query: 312 DEARRLLDQMPYKNIAAQTAMISGY 336
                LL ++  ++I  Q A   GY
Sbjct: 620 ---HVLLGELAAQHIFKQDAESIGY 641



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 135/304 (44%), Gaps = 24/304 (7%)

Query: 14  YVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM- 72
           YV   N  I    K  R+E+A++IF Q+  K+ +++ S+I+    N R  +A   F +M 
Sbjct: 371 YVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMI 430

Query: 73  --PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEK 126
              + N V+  S ++       +   +E+     +     D F    ++  Y R G +  
Sbjct: 431 LKSKPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRT 490

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYT 182
           A   F+L  N++D   WN ++ GYA+ G      +L   M    I    V++ S+L   +
Sbjct: 491 ALNQFNL--NEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACS 548

Query: 183 KNGEMHLASKFFEAMEERDVVSWNL-----MLDGYVELDDLDSAWKFFQKIP-EQNVVSW 236
           ++G +    ++F+ M+    ++ NL     ++D       L+ A +F +++P + +   W
Sbjct: 549 RSGMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIW 608

Query: 237 VTMLSGYARNGRM----LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE 292
             +L+    +  +    L A+ +F Q    ++  +  +   Y   G+ +E A++   M E
Sbjct: 609 GALLNACRIHRHVLLGELAAQHIFKQ-DAESIGYYILLCNLYADSGKWDEVAKVRRTMKE 667

Query: 293 RNPV 296
              +
Sbjct: 668 EGLI 671



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 95/228 (41%), Gaps = 34/228 (14%)

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
           +GN+L++M+ + G + NA  +F      D+ SWN L+ GY   G   EA+ L+  ++  G
Sbjct: 71  LGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAG 130

Query: 552 VAPDPVTFIGVLSACS-HVGLVDG-----GLKLFECMTEVYAIEPLVEHYACMIDLLSRA 605
           + PD  TF  VL +C+  + LV G      +  F+   +V  +  L+  Y    D++S  
Sbjct: 131 IRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSAR 190

Query: 606 GRLD---------------------------EAFEMVKGMKIKPNAGIWGTLLGACRMHQ 638
              D                           E F  ++ + I P+     +++ AC +  
Sbjct: 191 MLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLG 250

Query: 639 NIKLG-RIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685
           + +LG ++    +        S Y  L  M+   G W E E V   ME
Sbjct: 251 DERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGME 298


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  351 bits (900), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 228/740 (30%), Positives = 360/740 (48%), Gaps = 79/740 (10%)

Query: 25   LGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMI 84
            LGK  ++   +  F      +    NS+++ Y K G +  AR++F+ +P R+ VSWNSMI
Sbjct: 348  LGK--QIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMI 405

Query: 85   AGYLHNDKVKEARELFDKMFR----PDLFSW-ALMITCYTRKG--ELEKARELFDLLPNK 137
            A     ++ + +  LF  M      P  F+  ++   C   +G   L K    + L    
Sbjct: 406  ATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGD 465

Query: 138  EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
              T   NA+V  YA++G  N+AK L      K++VSWN+++S  ++N     A  +   M
Sbjct: 466  LRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLM 525

Query: 198  ----EERDVVSWNLMLDGYVELDDLD-----SAWKFFQKIPEQNVVSWVTMLSGYARNGR 248
                   D V+   +L    +L+ L        +        +N      ++  Y    +
Sbjct: 526  IVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQ 585

Query: 249  MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER-----NPVSWTTMID 303
              + R +FD +  R V  WNA++A Y +    ++A RLF+EM        N  ++ +++ 
Sbjct: 586  PKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLP 645

Query: 304  GYVRIAKLDEARRLLDQMPYKNIA----AQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
              VR     +   +   +  +        Q A++  Y +  R++ +  IF ++   D+V 
Sbjct: 646  ACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVS 705

Query: 360  WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRN 419
            WN MI G   CGR D+A+NL  +M                Q RQ +D    F        
Sbjct: 706  WNTMITGCIVCGRYDDALNLLHEM----------------QRRQGEDGSDTFV------- 742

Query: 420  TVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHH 479
                          ++  D    F        K +  TL   L  CA LAAL  G++IH 
Sbjct: 743  --------------DYEDDGGVPF--------KPNSVTLMTVLPGCAALAALGKGKEIHA 780

Query: 480  LAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATE 539
             A+K     D+ VG++L+ MYAKCG +  A  +F      +VI+WN LI  Y ++G   E
Sbjct: 781  YAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGEE 840

Query: 540  AIKLFEEMVMEG------VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVE 593
            A++LF  M   G      + P+ VT+I + +ACSH G+VD GL LF  M   + +EP  +
Sbjct: 841  ALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGD 900

Query: 594  HYACMIDLLSRAGRLDEAFEMVKGMKIKPN-AGIWGTLLGACRMHQNIKLGRIAVEKLSE 652
            HYAC++DLL R+GR+ EA+E++  M    N    W +LLGACR+HQ+++ G IA + L  
Sbjct: 901  HYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKHLFV 960

Query: 653  LEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDP 712
            LEP   S Y L+SN+++ AG WD+   VR  M+  G +K+PGCSWIE  +++H FLSGD 
Sbjct: 961  LEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHGDEVHKFLSGDA 1020

Query: 713  KQCRTAEICNTLKTLAAQIR 732
               ++ E+   L+TL+ ++R
Sbjct: 1021 SHPQSKELHEYLETLSQRMR 1040



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 115/286 (40%), Gaps = 53/286 (18%)

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
           +RR+   W  L+     +    DA+  +  M       D+      L A A +  L LG+
Sbjct: 291 ERRSPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGK 350

Query: 476 QIHHLAIKSGYV--NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           QIH    K G+   + + V NSL+ MY KCG +  A  +F D    D +SWNS+IA    
Sbjct: 351 QIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCR 410

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM---------TE 584
                 ++ LF  M+ E V P   T + V  ACSH   V GG++L + +           
Sbjct: 411 FEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSH---VRGGVRLGKQVHAYTLRNGDLR 467

Query: 585 VYAIEPLVEHYA------------------------CMIDLLSRAGRLDEAFEMVKGM-- 618
            Y    LV  YA                         +I  LS+  R +EA   V  M  
Sbjct: 468 TYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIV 527

Query: 619 -KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYAL 663
             ++P+     ++L AC   + +++GR            +  CYAL
Sbjct: 528 DGVRPDGVTLASVLPACSQLERLRIGR------------EIHCYAL 561



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 136/306 (44%), Gaps = 37/306 (12%)

Query: 11  KGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFE 70
           K  YV  QN  +    + GRVE +  IF +M++++ V++N+MI+     GR +DA  L  
Sbjct: 670 KDKYV--QNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLH 727

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
           +M +R     +     Y  +  V          F+P+  +   ++        L K +E+
Sbjct: 728 EMQRRQGEDGSDTFVDYEDDGGVP---------FKPNSVTLMTVLPGCAALAALGKGKEI 778

Query: 131 FDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
                 ++   D A  +A+V  YAK G  N A ++ D MP +N+++WN ++  Y  +G+ 
Sbjct: 779 HAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKG 838

Query: 188 HLASKFFEAM-----EERDV-----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-- 235
             A + F  M       R+V     V++  +         +D     F  +   + V   
Sbjct: 839 EEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPR 898

Query: 236 ---WVTMLSGYARNGRMLEARRLFDQMP--IRNVVAWNAMIAA-----YVQRGQIEEAAR 285
              +  ++    R+GR+ EA  L + MP  +  V AW++++ A      V+ G+I  A  
Sbjct: 899 GDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEI-AAKH 957

Query: 286 LFIEMP 291
           LF+  P
Sbjct: 958 LFVLEP 963


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  351 bits (900), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 237/831 (28%), Positives = 393/831 (47%), Gaps = 172/831 (20%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           QNK    +G +GR++ +I         +   Y+  +   +   R   A +LF++ P +++
Sbjct: 11  QNKAKITVG-NGRLQSSIHHIKHFLHPHGFLYHQSLPFISLPSRPRYAHQLFDETPLKDI 69

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
             +N ++  +  N+  +EA  LF      DL S  L +   T    L+    LFD +  +
Sbjct: 70  SHYNRLLFDFSRNNHDREALHLF-----KDLHSSGLGVDGLTLSCALKVCGVLFDQVVGR 124

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
           +                                 V   S+ SG+ +              
Sbjct: 125 Q---------------------------------VHCQSLKSGFLE-------------- 137

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFD 257
              DV     ++D Y++ +D +     F ++  +NVVSW ++LSGYARNG   E   L +
Sbjct: 138 ---DVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLIN 194

Query: 258 QMPIRNV---------------------------------------VAWNAMIAAYVQRG 278
           QM +  V                                          NA+I  Y++  
Sbjct: 195 QMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSE 254

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGY---------------VRIAKLDEAR-------R 316
            + +A  +F  M  R+ V+W  MI GY               +R+A +  +R       +
Sbjct: 255 MVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALK 314

Query: 317 LLDQMPYKNIAAQ-----------------TAMISGYVQNKRMDEANQIFDKI-GTHDVV 358
           L  Q    N   Q                 TA++  Y +   +DEA ++F      H+VV
Sbjct: 315 LCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVV 374

Query: 359 CWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAG----------------- 397
            W  MI G+ Q     +A++LF QM    V  +  T++T++AG                 
Sbjct: 375 TWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAY 434

Query: 398 --------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
                         Y +   + ++ ++F  +   ++ V+W+A+++G  Q      A+++F
Sbjct: 435 YEKVPSVATALLDAYVKTGNVVESARVFYSI-PAKDIVAWSAMLTGLAQTRDSEKAMEVF 493

Query: 444 VLMTQEGKKADHSTLACALSACAHLAA-LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
           + + +EG K +  T +  ++AC+  AA ++ G+QIH  A+KSG  N L V ++L+TMY+K
Sbjct: 494 IQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSK 553

Query: 503 CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
            G I++AE +F   +  D++SWNS+I GY  +G+A +A+++F+ M  +G+  D VTFIGV
Sbjct: 554 KGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGV 613

Query: 563 LSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKP 622
           L+AC+H GLV+ G K F  M + Y I+   EHY+CM+DL SRAG  D+A +++ GM    
Sbjct: 614 LTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGMPFPA 673

Query: 623 NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRV 682
           +  IW TLL ACR+H+N++LG++A EKL  L+P     Y LLSN+HA AG W+E   VR 
Sbjct: 674 SPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRK 733

Query: 683 SMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
            M+    +K+ GCSWIE+KN+I +FL+GD     +  +   L+ L+ ++++
Sbjct: 734 LMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLKD 784


>gi|195647336|gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 788

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 204/641 (31%), Positives = 346/641 (53%), Gaps = 22/641 (3%)

Query: 109 FSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS 168
           F++  M++ + + G++  AR LF  +P K     +  MV    K G+  +A +L +  P 
Sbjct: 150 FTYDFMVSEHVKAGDIASARRLFYGMPEKS-VVSYTTMVDALMKRGSVRDAVELYERCPL 208

Query: 169 KNIVSWNSMLSGYTKNGEMH-----LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWK 223
            ++  + +M+SG+ +N E+H     +  K        +VV+   ++   V   + D A  
Sbjct: 209 HSVAFFTAMISGFVRN-ELHKDAFPVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMG 267

Query: 224 FFQ-----KIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
                    + E+++    ++++ Y R G    A R+FD M +R+VV+W A++  Y   G
Sbjct: 268 VVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYADLG 327

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM----PYKNIAAQTAMIS 334
            +  A R+   MP RN VSW T+I  + +     EA +L  QM       NI+  ++++S
Sbjct: 328 DLYGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLS 387

Query: 335 GYVQNKRMDEANQIFD---KIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
                + +    +I     K+G+  ++   + +I  Y +C +   A  +F  +  K+ V 
Sbjct: 388 ACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVC 447

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
           WN++I+GY+   +M +A  +F +M   RN+VSWN +ISG+ +N    DAL  F  M   G
Sbjct: 448 WNSLISGYSWNGKMVEAEGLFNKM-PARNSVSWNTMISGYAENRRFGDALNYFYAMLASG 506

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
                 TL+  L ACA+L +L++GR +H   +K G  +++F+G +L  MYAK G + ++ 
Sbjct: 507 HIPGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSR 566

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
            +F      + I+W +++ G A NG A E+I LFE+M+  G+AP+  TF+ +L ACSH G
Sbjct: 567 RVFYQMPEKNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCG 626

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
           LV+  +  FE M + + I P  +HY CM+D+L+RAG L EA E++  +  + +   W +L
Sbjct: 627 LVEQAIHYFETM-QAHGIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSSELDTSSWSSL 685

Query: 631 LGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQ 690
           L AC  ++N ++G  A +KL ELE   T+ Y LLSNM+A  G+W +  + R+ M+G+  +
Sbjct: 686 LSACSTYRNKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQGASLK 745

Query: 691 KQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           K  GCSW++++ Q H F S   K   + EI   L  L  ++
Sbjct: 746 KDAGCSWLQLRGQYHAFFSWKEKHPLSLEIYEILDLLMLEL 786



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 141/557 (25%), Positives = 260/557 (46%), Gaps = 75/557 (13%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           ++ TY+ M+S + K G +  AR+LF  MP++++VS+ +M+   +    V++A EL+++  
Sbjct: 148 SSFTYDFMVSEHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCP 207

Query: 105 RPDLFSWALMITCYTRKGELEKARELF------DLLPNKEDTACWNAMVAGYAKIGNYNE 158
              +  +  MI+ + R    + A  +F       + PN     C   ++      G ++ 
Sbjct: 208 LHSVAFFTAMISGFVRNELHKDAFPVFRKMLTCSVRPNVVTLIC---VIKACVGAGEFDL 264

Query: 159 AKKLLDA-----MPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV 213
           A  ++       +  K+I   NS+++ Y + G+   A + F+ ME RDVVSW  +LD Y 
Sbjct: 265 AMGVVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYA 324

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI----RNVVAWNA 269
           +L DL  A +    +P +N VSW T+++ + + G   EA +L+ QM       N+  +++
Sbjct: 325 DLGDLYGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSS 384

Query: 270 MIAAYVQ----RGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           +++A       RG     A         N    +++ID Y +  +   A+R+ + +P KN
Sbjct: 385 VLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKN 444

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR---- 381
                ++ISGY  N +M EA  +F+K+   + V WN MI GYA+  R  +A+N F     
Sbjct: 445 TVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLA 504

Query: 382 --------------------------QMVNKDIVTW---NTMIAG------YAQIRQMDD 406
                                     +MV+ +IV     + +  G      YA+   +D 
Sbjct: 505 SGHIPGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDS 564

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
           + ++F +M   +N ++W A++ G  +N F  +++ +F  M + G   +  T    L AC+
Sbjct: 565 SRRVFYQM-PEKNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACS 623

Query: 467 HLAALQLG------RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA-ELLFKDADPV 519
           H   ++         Q H +  KS +         ++ + A+ G +  A ELL K +  +
Sbjct: 624 HCGLVEQAIHYFETMQAHGIPPKSKHY------TCMVDVLARAGCLPEAEELLMKVSSEL 677

Query: 520 DVISWNSLIAGYAINGN 536
           D  SW+SL++  +   N
Sbjct: 678 DTSSWSSLLSACSTYRN 694



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 139/594 (23%), Positives = 271/594 (45%), Gaps = 111/594 (18%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F  +  +++  K+G +  A ++F  M +K+ V+Y +M+ A  K G V DA +L+E+ P  
Sbjct: 150 FTYDFMVSEHVKAGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLH 209

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDL---------------FSWAL--- 113
           ++  + +MI+G++ N+  K+A  +F KM     RP++               F  A+   
Sbjct: 210 SVAFFTAMISGFVRNELHKDAFPVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVV 269

Query: 114 ------------------MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGN 155
                             +IT Y R G+   A  +FD +  + D   W A++  YA +G+
Sbjct: 270 GLAVKCNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVR-DVVSWTALLDVYADLGD 328

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM------------------ 197
              A+++LDAMP++N VSW ++++ + + G+   A K +  M                  
Sbjct: 329 LYGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSA 388

Query: 198 ---------------------EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSW 236
                                   ++   + ++D Y +      A + F  +PE+N V W
Sbjct: 389 CATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCW 448

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER--- 293
            +++SGY+ NG+M+EA  LF++MP RN V+WN MI+ Y +  +  +A   F  M      
Sbjct: 449 NSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHI 508

Query: 294 -NPVSWTTMIDGYVRIAKLDEARRLLDQMPY----KNIAAQTAMISGYVQNKRMDEANQI 348
              ++ ++++     +  L+  R +  ++       NI   TA+   Y ++  +D + ++
Sbjct: 509 PGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRV 568

Query: 349 FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIV----TWNTMIAGYAQIRQM 404
           F ++   + + W  M++G A+ G  +E+I+LF  M+   I     T+  ++   +    +
Sbjct: 569 FYQMPEKNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLV 628

Query: 405 DDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
           + A+  FE M   G    +  +  ++    +     +A ++ + ++ E    D S+ +  
Sbjct: 629 EQAIHYFETMQAHGIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSSE---LDTSSWSSL 685

Query: 462 LSACAHLAALQLG----RQIHHLAI--KSGYVNDLFVGNSLITMYAKCGRIQNA 509
           LSAC+     ++G    +++H L     +GYV        L  MYA CG+ ++A
Sbjct: 686 LSACSTYRNKEIGERAAKKLHELEKDNTAGYV-------LLSNMYASCGKWKDA 732



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 182/378 (48%), Gaps = 41/378 (10%)

Query: 179 SGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
           + +T+  +   A +   A +     +++ M+  +V+  D+ SA + F  +PE++VVS+ T
Sbjct: 126 AAFTRAADRDQAFRDCVAADAASSFTYDFMVSEHVKAGDIASARRLFYGMPEKSVVSYTT 185

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----PERN 294
           M+    + G + +A  L+++ P+ +V  + AMI+ +V+    ++A  +F +M       N
Sbjct: 186 MVDALMKRGSVRDAVELYERCPLHSVAFFTAMISGFVRNELHKDAFPVFRKMLTCSVRPN 245

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLD-----QMPYKNIAAQTAMISGYVQNKRMDEANQIF 349
            V+   +I   V   + D A  ++       +  K+I    ++I+ Y++      A+++F
Sbjct: 246 VVTLICVIKACVGAGEFDLAMGVVGLAVKCNLFEKSIEVHNSLITLYLRMGDAAAAHRVF 305

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVK 409
           D +   DVV W  ++  YA  G +  A  +   M  ++ V+W T+IA + Q     +A+K
Sbjct: 306 DDMEVRDVVSWTALLDVYADLGDLYGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALK 365

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           ++ +                                M  +G + + S  +  LSACA L 
Sbjct: 366 LYSQ--------------------------------MLADGCRPNISCFSSVLSACATLQ 393

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
            L+ G +IH  A+K G   +LFV +SLI MY KC +   A+ +F      + + WNSLI+
Sbjct: 394 DLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLIS 453

Query: 530 GYAINGNATEAIKLFEEM 547
           GY+ NG   EA  LF +M
Sbjct: 454 GYSWNGKMVEAEGLFNKM 471



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 149/319 (46%), Gaps = 19/319 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F  +  I    K  +   A ++F+ + +KNTV +NS+IS Y+ NG++ +A  LF +MP 
Sbjct: 414 LFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPA 473

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAREL 130
           RN VSWN+MI+GY  N +  +A   F  M      P   + + ++        LE  R +
Sbjct: 474 RNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITLSSVLLACANLCSLEMGRMV 533

Query: 131 FD---LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
                 L  +++     A+   YAK G+ + ++++   MP KN ++W +M+ G  +NG  
Sbjct: 534 HAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRVFYQMPEKNNITWTAMVQGLAENGFA 593

Query: 188 HLASKFFEAMEERDVV----SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS----WVTM 239
             +   FE M E  +     ++  +L        ++ A  +F+ +    +      +  M
Sbjct: 594 EESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHYFETMQAHGIPPKSKHYTCM 653

Query: 240 LSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAA---YVQRGQIEEAARLFIEMPERNP 295
           +   AR G + EA  L  ++    +  +W+++++A   Y  +   E AA+   E+ + N 
Sbjct: 654 VDVLARAGCLPEAEELLMKVSSELDTSSWSSLLSACSTYRNKEIGERAAKKLHELEKDNT 713

Query: 296 VSWTTMIDGYVRIAKLDEA 314
             +  + + Y    K  +A
Sbjct: 714 AGYVLLSNMYASCGKWKDA 732


>gi|222625627|gb|EEE59759.1| hypothetical protein OsJ_12247 [Oryza sativa Japonica Group]
          Length = 950

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 199/612 (32%), Positives = 338/612 (55%), Gaps = 20/612 (3%)

Query: 109 FSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS 168
           F++  M+  + + G++  AR LFD +P +   + +  MV    K G+  +A +L    P 
Sbjct: 149 FAYDFMVREHVKAGDIVSARRLFDGMPERSVVS-YTTMVDALMKRGSVRDAVELYRQCPL 207

Query: 169 KNIVSWNSMLSGYTKNGEMHLASKFFEAM-------EERDVVSWNLMLDGYVELDDLDSA 221
            ++  + +M++G+  N     A   F  M        E  +VS      G  E D   S 
Sbjct: 208 CSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSI 267

Query: 222 WKFFQK--IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ 279
                K  + ++N+    ++++ Y R G    ARR+FD+M +R+VV+W A++  Y + G 
Sbjct: 268 VGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGD 327

Query: 280 IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM----PYKNIAAQTAMISG 335
           +E A R+  EMPERN VSW T++  + +     EA  L  QM       NI+  ++++  
Sbjct: 328 LEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGA 387

Query: 336 YVQNKRMDEA----NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTW 391
               + +       NQ      +++V   + +I  Y +C ++ +A  +F  +  K+IV W
Sbjct: 388 CASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCW 447

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
           N++I+GY+   +M +A ++F++M   RN  SWN++ISG+ QN   +DALK F  M   G+
Sbjct: 448 NSLISGYSNNSKMVEAEELFKKM-PARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQ 506

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL 511
                T +  L ACA L +L++G+ +H   IK G    +FVG +L  MYAK G + +++ 
Sbjct: 507 SPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKR 566

Query: 512 LFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
           +F +    + ++W ++I G A NG A E+I LFE+M+  G+ P+  TF+ +L ACSH GL
Sbjct: 567 VFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGL 626

Query: 572 VDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           V+  +  FE M +   I P  +HY CM+D+L+RAG L EA +++  ++ K  A  W  LL
Sbjct: 627 VEHAMHYFE-MMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALL 685

Query: 632 GACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQK 691
            AC +++N ++G  A ++L EL+   T+ Y LLSNM+A  G+W +  ++R+ M+G   +K
Sbjct: 686 SACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKK 745

Query: 692 QPGCSWIEVKNQ 703
             GCSW++++++
Sbjct: 746 DGGCSWVQIRDE 757



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 142/558 (25%), Positives = 258/558 (46%), Gaps = 65/558 (11%)

Query: 39  SQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARE 98
           S +   +   Y+ M+  + K G +  AR+LF+ MP+R++VS+ +M+   +    V++A E
Sbjct: 141 SVVGAASPFAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVE 200

Query: 99  LFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL------PNKEDTACWNAMVAGYAK 152
           L+ +     +  +  MI  +      + A  +F  +      PN+       +++     
Sbjct: 201 LYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLV---SVIKACIG 257

Query: 153 IGNYNEAKKLLD-AMPS----KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL 207
            G ++ A  ++  AM S    KN+   NS+++ Y + G+   A + F+ ME RDVVSW  
Sbjct: 258 AGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTA 317

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM-------- 259
           +LD Y EL DL+ A +   ++PE+N VSW T+++ + + G   EA  L+ QM        
Sbjct: 318 LLDVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPN 377

Query: 260 ---------------PIR----------------NVVAWNAMIAAYVQRGQIEEAARLFI 288
                           +R                NV   +A+I  Y +  Q+ +A  +F 
Sbjct: 378 ISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFY 437

Query: 289 EMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQI 348
            +P++N V W ++I GY   +K+ EA  L  +MP +N+A+  ++ISGY QN++  +A + 
Sbjct: 438 SLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKS 497

Query: 349 FDKI-----GTHDVVCWNVMIKGYAQC----GRMDEAINLFRQMVNKDIVTWNTMIAGYA 399
           F  +        ++   +V++   + C    G+M  A  + +  + + I     +   YA
Sbjct: 498 FHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHA-KIIKLGIKESIFVGTALSDMYA 556

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
           +   +D + ++F EM K RN V+W A+I G  +N F  +++ +F  M   G   +  T  
Sbjct: 557 KSGDLDSSKRVFYEMPK-RNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFL 615

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE-LLFKDADP 518
             L AC+H   ++       +    G          ++ + A+ G +  AE LL K    
Sbjct: 616 AILFACSHSGLVEHAMHYFEMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESK 675

Query: 519 VDVISWNSLIAGYAINGN 536
            +  SW +L++   I  N
Sbjct: 676 SEANSWAALLSACNIYRN 693



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 138/583 (23%), Positives = 265/583 (45%), Gaps = 111/583 (19%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K+G +  A ++F  M +++ V+Y +M+ A  K G V DA +L+ Q P  ++  + +MIAG
Sbjct: 160 KAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAG 219

Query: 87  YLHNDKVKEARELFDKMFRPDL-------------------FSWAL-------------- 113
           ++ N+  K+A  +F +M    +                   F  A+              
Sbjct: 220 FVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDK 279

Query: 114 -------MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
                  +IT Y RKG+ + AR +FD +  + D   W A++  YA++G+   A+++LD M
Sbjct: 280 NLGVRNSLITLYLRKGDADAARRMFDEMEVR-DVVSWTALLDVYAELGDLEGARRVLDEM 338

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAME---------------------------- 198
           P +N VSW ++++ + + G    A   +  M                             
Sbjct: 339 PERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGR 398

Query: 199 -----------ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
                        +V   + ++D Y +   L  A   F  +P++N+V W +++SGY+ N 
Sbjct: 399 KIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNS 458

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM--PERNP--VSWTTMID 303
           +M+EA  LF +MP RNV +WN++I+ Y Q  Q  +A + F  M    ++P  +++++++ 
Sbjct: 459 KMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLL 518

Query: 304 GYVRIAKLDEAR----RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
               +  L+  +    +++     ++I   TA+   Y ++  +D + ++F ++   + V 
Sbjct: 519 ACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVA 578

Query: 360 WNVMIKGYAQCGRMDEAINLFRQMVNKDIV----TWNTMIAGYAQIRQMDDAVKIFEEM- 414
           W  MI+G A+ G  +E+I LF  M++  I     T+  ++   +    ++ A+  FE M 
Sbjct: 579 WTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQ 638

Query: 415 --GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQ 472
             G       +  ++   L    HL   +  +L  +   K++ ++ A  LSAC      +
Sbjct: 639 ACGISPKAKHYTCMVD-VLARAGHLAEAEDLLLKIES--KSEANSWAALLSACNIYRNKE 695

Query: 473 LG----RQIHHLAI--KSGYVNDLFVGNSLITMYAKCGRIQNA 509
           +G    +++  L     +GYV        L  MYA CG+ ++A
Sbjct: 696 MGERAAKRLQELDKDNTAGYV-------LLSNMYASCGKWKDA 731



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 120/469 (25%), Positives = 224/469 (47%), Gaps = 38/469 (8%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           +N  IT   + G  + A ++F +M  ++ V++ +++  YA+ G +  AR++ ++MP+RN 
Sbjct: 284 RNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNE 343

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDL 133
           VSW +++A +      KEA  L+ +M     RP++  ++ ++       +L   R++ + 
Sbjct: 344 VSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHN- 402

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDA------MPSKNIVSWNSMLSGYTKNGEM 187
                  AC N +    A I  Y + K+L DA      +P KNIV WNS++SGY+ N +M
Sbjct: 403 --QTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKM 460

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI------PEQNVVSWVTMLS 241
             A + F+ M  R+V SWN ++ GY +      A K F  +      P +   S V +  
Sbjct: 461 VEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLAC 520

Query: 242 GYARN---GRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
               +   G+M+ A+ +  ++ I+ ++    A+   Y + G ++ + R+F EMP+RN V+
Sbjct: 521 ASLCSLEMGKMVHAKII--KLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVA 578

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAA--QT--AMISGYVQNKRMDEANQIFDKIG 353
           WT MI G       +E+  L + M    I    QT  A++     +  ++ A   F+ + 
Sbjct: 579 WTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQ 638

Query: 354 THDVVC----WNVMIKGYAQCGRMDEAINLFRQMVNK-DIVTWNTMIAG---YAQIRQMD 405
              +      +  M+   A+ G + EA +L  ++ +K +  +W  +++    Y      +
Sbjct: 639 ACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGE 698

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
            A K  +E+ K  NT  +  L + +       DA ++ +LM     K D
Sbjct: 699 RAAKRLQELDK-DNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKD 746



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 151/324 (46%), Gaps = 23/324 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  +  I    K  ++ +A  IF  + QKN V +NS+IS Y+ N ++ +A +LF++MP 
Sbjct: 413 VFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPA 472

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPD------LFSWALMIT---CYTRKGELE 125
           RN+ SWNS+I+GY  N +  +A + F  M           FS  L+     C    G++ 
Sbjct: 473 RNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMV 532

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
            A+ +   L  KE      A+   YAK G+ + +K++   MP +N V+W +M+ G  +NG
Sbjct: 533 HAKII--KLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLAENG 590

Query: 186 EMHLASKFFEAMEERDVV----SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS----WV 237
               +   FE M    +     ++  +L        ++ A  +F+ +    +      + 
Sbjct: 591 FAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQACGISPKAKHYT 650

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVV-AWNAMIAA---YVQRGQIEEAARLFIEMPER 293
            M+   AR G + EA  L  ++  ++   +W A+++A   Y  +   E AA+   E+ + 
Sbjct: 651 CMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGERAAKRLQELDKD 710

Query: 294 NPVSWTTMIDGYVRIAKLDEARRL 317
           N   +  + + Y    K  +A  +
Sbjct: 711 NTAGYVLLSNMYASCGKWKDAAEM 734



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 125/282 (44%), Gaps = 39/282 (13%)

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIF 411
           +G      ++ M++ + + G +  A  LF  M  + +V++ TM+    +   + DAV+++
Sbjct: 143 VGAASPFAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELY 202

Query: 412 EEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAAL 471
            +     +   + A+I+GF+ NE   DAL +F  M   G   +  TL   + AC      
Sbjct: 203 RQC-PLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEF 261

Query: 472 QLGRQIHHLAIKSGYVN-DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
            L   I  LA+KS  ++ +L V NSLIT+Y + G    A  +F + +  DV+SW +L+  
Sbjct: 262 DLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDV 321

Query: 531 YA-------------------------------INGNATEAIKLFEEMVMEGVAPDPVTF 559
           YA                                 GNA EA+ L+ +M+ +G  P+   F
Sbjct: 322 YAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCF 381

Query: 560 IGVLSACSHVGLVDGGLKL------FECMTEVYAIEPLVEHY 595
             VL AC+ +  +  G K+        C   V+    L++ Y
Sbjct: 382 SSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMY 423


>gi|218193589|gb|EEC76016.1| hypothetical protein OsI_13171 [Oryza sativa Indica Group]
          Length = 950

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 199/612 (32%), Positives = 338/612 (55%), Gaps = 20/612 (3%)

Query: 109 FSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS 168
           F++  M+  + + G++  AR LFD +P +   + +  MV    K G+  +A +L    P 
Sbjct: 149 FAYDFMVREHVKAGDIVSARRLFDGMPERSVVS-YTTMVDALMKRGSVRDAVELYRQCPL 207

Query: 169 KNIVSWNSMLSGYTKNGEMHLASKFFEAM-------EERDVVSWNLMLDGYVELDDLDSA 221
            ++  + +M++G+  N     A   F  M        E  +VS      G  E D   S 
Sbjct: 208 CSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSI 267

Query: 222 WKFFQK--IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ 279
                K  + ++N+    ++++ Y R G    ARR+FD+M +R+VV+W A++  Y + G 
Sbjct: 268 VGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGD 327

Query: 280 IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM----PYKNIAAQTAMISG 335
           +E A R+  EMPERN VSW T++  + +     EA  L  QM       NI+  ++++  
Sbjct: 328 LEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGA 387

Query: 336 YVQNKRMDEA----NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTW 391
               + +       NQ      +++V   + +I  Y +C ++ +A  +F  +  K+IV W
Sbjct: 388 CASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCW 447

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
           N++I+GY+   +M +A ++F++M   RN  SWN++ISG+ QN   +DALK F  M   G+
Sbjct: 448 NSLISGYSNNSKMVEAEELFKKM-PARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQ 506

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL 511
                T +  L ACA L +L++G+ +H   IK G    +FVG +L  MYAK G + +++ 
Sbjct: 507 SPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKR 566

Query: 512 LFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
           +F +    + ++W ++I G A NG A E+I LFE+M+  G+ P+  TF+ +L ACSH GL
Sbjct: 567 VFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGL 626

Query: 572 VDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           V+  +  FE M +   I P  +HY CM+D+L+RAG L EA +++  ++ K  A  W  LL
Sbjct: 627 VEHAMHYFE-MMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALL 685

Query: 632 GACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQK 691
            AC +++N ++G  A ++L EL+   T+ Y LLSNM+A  G+W +  ++R+ M+G   +K
Sbjct: 686 SACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKK 745

Query: 692 QPGCSWIEVKNQ 703
             GCSW++++++
Sbjct: 746 DGGCSWVQIRDE 757



 Score =  189 bits (479), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 142/558 (25%), Positives = 258/558 (46%), Gaps = 65/558 (11%)

Query: 39  SQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARE 98
           S +   +   Y+ M+  + K G +  AR+LF+ MP+R++VS+ +M+   +    V++A E
Sbjct: 141 SVVGAASPFAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVE 200

Query: 99  LFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL------PNKEDTACWNAMVAGYAK 152
           L+ +     +  +  MI  +      + A  +F  +      PN+       +++     
Sbjct: 201 LYRQCPLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLV---SVIKACIG 257

Query: 153 IGNYNEAKKLLD-AMPS----KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL 207
            G ++ A  ++  AM S    KN+   NS+++ Y + G+   A + F+ ME RDVVSW  
Sbjct: 258 AGEFDLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTA 317

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM-------- 259
           +LD Y EL DL+ A +   ++PE+N VSW T+++ + + G   EA  L+ QM        
Sbjct: 318 LLDVYAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPN 377

Query: 260 ---------------PIR----------------NVVAWNAMIAAYVQRGQIEEAARLFI 288
                           +R                NV   +A+I  Y +  Q+ +A  +F 
Sbjct: 378 ISCFSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFY 437

Query: 289 EMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQI 348
            +P++N V W ++I GY   +K+ EA  L  +MP +N+A+  ++ISGY QN++  +A + 
Sbjct: 438 SLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKS 497

Query: 349 FDKI-----GTHDVVCWNVMIKGYAQC----GRMDEAINLFRQMVNKDIVTWNTMIAGYA 399
           F  +        ++   +V++   + C    G+M  A  + +  + + I     +   YA
Sbjct: 498 FHAMLASGQSPGEITFSSVLLACASLCSLEMGKMVHA-KIIKLGIKESIFVGTALSDMYA 556

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
           +   +D + ++F EM K RN V+W A+I G  +N F  +++ +F  M   G   +  T  
Sbjct: 557 KSGDLDSSKRVFYEMPK-RNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFL 615

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE-LLFKDADP 518
             L AC+H   ++       +    G          ++ + A+ G +  AE LL K    
Sbjct: 616 AILFACSHSGLVEHAMHYFEMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESK 675

Query: 519 VDVISWNSLIAGYAINGN 536
            +  SW +L++   I  N
Sbjct: 676 SEANSWAALLSACNIYRN 693



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 138/583 (23%), Positives = 265/583 (45%), Gaps = 111/583 (19%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K+G +  A ++F  M +++ V+Y +M+ A  K G V DA +L+ Q P  ++  + +MIAG
Sbjct: 160 KAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAG 219

Query: 87  YLHNDKVKEARELFDKMFRPDL-------------------FSWAL-------------- 113
           ++ N+  K+A  +F +M    +                   F  A+              
Sbjct: 220 FVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDK 279

Query: 114 -------MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
                  +IT Y RKG+ + AR +FD +  + D   W A++  YA++G+   A+++LD M
Sbjct: 280 NLGVRNSLITLYLRKGDADAARRMFDEMEVR-DVVSWTALLDVYAELGDLEGARRVLDEM 338

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAME---------------------------- 198
           P +N VSW ++++ + + G    A   +  M                             
Sbjct: 339 PERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGR 398

Query: 199 -----------ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
                        +V   + ++D Y +   L  A   F  +P++N+V W +++SGY+ N 
Sbjct: 399 KIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNS 458

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM--PERNP--VSWTTMID 303
           +M+EA  LF +MP RNV +WN++I+ Y Q  Q  +A + F  M    ++P  +++++++ 
Sbjct: 459 KMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLL 518

Query: 304 GYVRIAKLDEAR----RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
               +  L+  +    +++     ++I   TA+   Y ++  +D + ++F ++   + V 
Sbjct: 519 ACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVA 578

Query: 360 WNVMIKGYAQCGRMDEAINLFRQMVNKDIV----TWNTMIAGYAQIRQMDDAVKIFEEM- 414
           W  MI+G A+ G  +E+I LF  M++  I     T+  ++   +    ++ A+  FE M 
Sbjct: 579 WTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQ 638

Query: 415 --GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQ 472
             G       +  ++   L    HL   +  +L  +   K++ ++ A  LSAC      +
Sbjct: 639 ACGISPKAKHYTCMVD-VLARAGHLAEAEDLLLKIES--KSEANSWAALLSACNIYRNKE 695

Query: 473 LG----RQIHHLAI--KSGYVNDLFVGNSLITMYAKCGRIQNA 509
           +G    +++  L     +GYV        L  MYA CG+ ++A
Sbjct: 696 MGERAAKRLQELDKDNTAGYV-------LLSNMYASCGKWKDA 731



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 120/469 (25%), Positives = 224/469 (47%), Gaps = 38/469 (8%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           +N  IT   + G  + A ++F +M  ++ V++ +++  YA+ G +  AR++ ++MP+RN 
Sbjct: 284 RNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNE 343

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDL 133
           VSW +++A +      KEA  L+ +M     RP++  ++ ++       +L   R++ + 
Sbjct: 344 VSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHN- 402

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDA------MPSKNIVSWNSMLSGYTKNGEM 187
                  AC N +    A I  Y + K+L DA      +P KNIV WNS++SGY+ N +M
Sbjct: 403 --QTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKM 460

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI------PEQNVVSWVTMLS 241
             A + F+ M  R+V SWN ++ GY +      A K F  +      P +   S V +  
Sbjct: 461 VEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLAC 520

Query: 242 GYARN---GRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
               +   G+M+ A+ +  ++ I+ ++    A+   Y + G ++ + R+F EMP+RN V+
Sbjct: 521 ASLCSLEMGKMVHAKII--KLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVA 578

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAA--QT--AMISGYVQNKRMDEANQIFDKIG 353
           WT MI G       +E+  L + M    I    QT  A++     +  ++ A   F+ + 
Sbjct: 579 WTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQ 638

Query: 354 THDVVC----WNVMIKGYAQCGRMDEAINLFRQMVNK-DIVTWNTMIAG---YAQIRQMD 405
              +      +  M+   A+ G + EA +L  ++ +K +  +W  +++    Y      +
Sbjct: 639 ACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGE 698

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
            A K  +E+ K  NT  +  L + +       DA ++ +LM     K D
Sbjct: 699 RAAKRLQELDK-DNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKD 746



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 151/324 (46%), Gaps = 23/324 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  +  I    K  ++ +A  IF  + QKN V +NS+IS Y+ N ++ +A +LF++MP 
Sbjct: 413 VFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPA 472

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPD------LFSWALMIT---CYTRKGELE 125
           RN+ SWNS+I+GY  N +  +A + F  M           FS  L+     C    G++ 
Sbjct: 473 RNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMV 532

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
            A+ +   L  KE      A+   YAK G+ + +K++   MP +N V+W +M+ G  +NG
Sbjct: 533 HAKII--KLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLAENG 590

Query: 186 EMHLASKFFEAMEERDVV----SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS----WV 237
               +   FE M    +     ++  +L        ++ A  +F+ +    +      + 
Sbjct: 591 FAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQACGISPKAKHYT 650

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVV-AWNAMIAA---YVQRGQIEEAARLFIEMPER 293
            M+   AR G + EA  L  ++  ++   +W A+++A   Y  +   E AA+   E+ + 
Sbjct: 651 CMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGERAAKRLQELDKD 710

Query: 294 NPVSWTTMIDGYVRIAKLDEARRL 317
           N   +  + + Y    K  +A  +
Sbjct: 711 NTAGYVLLSNMYASCGKWKDAAEM 734



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 125/282 (44%), Gaps = 39/282 (13%)

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIF 411
           +G      ++ M++ + + G +  A  LF  M  + +V++ TM+    +   + DAV+++
Sbjct: 143 VGAASPFAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELY 202

Query: 412 EEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAAL 471
            +     +   + A+I+GF+ NE   DAL +F  M   G   +  TL   + AC      
Sbjct: 203 RQC-PLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEF 261

Query: 472 QLGRQIHHLAIKSGYVN-DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
            L   I  LA+KS  ++ +L V NSLIT+Y + G    A  +F + +  DV+SW +L+  
Sbjct: 262 DLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDV 321

Query: 531 YA-------------------------------INGNATEAIKLFEEMVMEGVAPDPVTF 559
           YA                                 GNA EA+ L+ +M+ +G  P+   F
Sbjct: 322 YAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCF 381

Query: 560 IGVLSACSHVGLVDGGLKL------FECMTEVYAIEPLVEHY 595
             VL AC+ +  +  G K+        C   V+    L++ Y
Sbjct: 382 SSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMY 423


>gi|115476154|ref|NP_001061673.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|27260973|dbj|BAC45090.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|40253357|dbj|BAD05289.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113623642|dbj|BAF23587.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|215715200|dbj|BAG94951.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 696

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 210/648 (32%), Positives = 333/648 (51%), Gaps = 65/648 (10%)

Query: 143 WNAMVAGYAKIG--NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER 200
           WN ++  Y++        A+++ D +P ++ VSWN++L+    +G    A +   AM  +
Sbjct: 28  WNQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQAASGAHPEAWRLLRAMHAQ 87

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPE--------QNVVSWVTMLSGYARNGRMLEA 252
            + S    L   +    +        ++           NV +   +L  YA+ GR+ +A
Sbjct: 88  GLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDA 147

Query: 253 RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLD 312
           R++FD MP RN V+WNA+IA Y + G +  A  LF+EM ER  ++        +  A   
Sbjct: 148 RQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEM-EREGLAPDEATFASLLTAVEG 206

Query: 313 EARRLLDQMPYKNIAAQTAM--------ISGYVQNKRMDEANQIFDKIG-THDVVCWNVM 363
            +  L+ Q+  K +   +A+        I+ Y Q   + ++ +IFD IG   D++ WN M
Sbjct: 207 PSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDLISWNAM 266

Query: 364 IKGYAQCGRMDEAINLFRQM-----VNKDIVTW--------------------------- 391
           +  Y   G  DEA+  F +M     V+ D+ ++                           
Sbjct: 267 LGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKS 326

Query: 392 ---------NTMIAGYAQIRQ---MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDA 439
                    N +IA Y +  +   M+DA K F  +   ++TVSWN++++G+ Q+    DA
Sbjct: 327 ALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSL-VLKDTVSWNSMLTGYSQHGLSADA 385

Query: 440 LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
           LK F  M  E  + D    + AL + + LA LQLG+QIH L I SG+ ++ FV +SLI M
Sbjct: 386 LKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFM 445

Query: 500 YAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTF 559
           Y+K G I +A   F++AD    + WN++I GYA +G A     LF EM+      D +TF
Sbjct: 446 YSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITF 505

Query: 560 IGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMK 619
           +G++++CSH GLVD G ++   M   Y +   +EHYAC +DL  RAG+LD+A +++  M 
Sbjct: 506 VGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAKKLIDSMP 565

Query: 620 IKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEK 679
            +P+A +W TLLGACR+H N++L       L   EP++ S Y LLS+M++  G W +   
Sbjct: 566 FEPDAMVWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYVLLSSMYSGLGMWSDRAT 625

Query: 680 VRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
           V+  M+  G  K PG SWIEVKN++H+F + D    +  EI   L+ L
Sbjct: 626 VQRVMKKRGLSKVPGWSWIEVKNEVHSFNAEDKSHPKMDEIYEMLRVL 673



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 139/560 (24%), Positives = 260/560 (46%), Gaps = 74/560 (13%)

Query: 49  YNSMISAYAKNGR--VNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP 106
           +N +++AY+++    +  AR++F+++P+R+ VSWN+++A    +    EA  L   M   
Sbjct: 28  WNQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQAASGAHPEAWRLLRAMHAQ 87

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPN-------KEDTACWNAMVAGYAKIGNYNEA 159
            L S    +    R   + +   +   L +         +    +A++  YAK G   +A
Sbjct: 88  GLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDA 147

Query: 160 KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLD 219
           +++ D MP +N VSWN++++GYT++G+M  A + F  ME   +          +   +  
Sbjct: 148 RQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFASLLTAVEGP 207

Query: 220 SAWKFFQ---KIPEQNVVSWVTML----SGYARNGRMLEARRLFDQM-PIRNVVAWNAMI 271
           S +   Q   KI +      +T+L    + Y++ G + ++RR+FD +  IR++++WNAM+
Sbjct: 208 SCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDLISWNAML 267

Query: 272 AAYVQRGQIEEAARLFIEMPERNPV-----SWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
            AY   G  +EA + F+ M + + V     S+T++I         D   R++  +  K+ 
Sbjct: 268 GAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSA 327

Query: 327 A--------AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
                    A  AM + Y +N  M++A + F+ +   D V WN M+ GY+Q G   +A+ 
Sbjct: 328 LEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALK 387

Query: 379 LFRQMVNKDIVT---------------------------------------WNTMIAGYA 399
            FR M ++++ T                                        +++I  Y+
Sbjct: 388 FFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYS 447

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
           +   +DDA K FEE  K  ++V WNA+I G+ Q+    +   +F  M Q     DH T  
Sbjct: 448 KSGIIDDARKSFEEADK-SSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFV 506

Query: 460 CALSACAHLAALQLGRQI-HHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
             +++C+H   +  G +I + +  K G    +      + +Y + G++  A+ L  D+ P
Sbjct: 507 GLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAKKLI-DSMP 565

Query: 519 V--DVISWNSLIAGYAINGN 536
              D + W +L+    I+GN
Sbjct: 566 FEPDAMVWMTLLGACRIHGN 585



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 197/409 (48%), Gaps = 46/409 (11%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           N    ++++  YAK GRV DAR++F+ MP+RN VSWN++IAGY  +  +  A ELF +M 
Sbjct: 127 NVFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEME 186

Query: 105 R----PDLFSWALMIT------CYTR---KGELEKARELFDLLPNKEDTACWNAMVAGYA 151
           R    PD  ++A ++T      C+      G++ K      L          NA +  Y+
Sbjct: 187 REGLAPDEATFASLLTAVEGPSCFLMHQLHGKIVKYGSALGL-------TVLNAAITAYS 239

Query: 152 KIGNYNEAKKLLDAMPS-KNIVSWNSMLSGYTKNGEMHLASKFFEAMEER-----DVVSW 205
           + G+  +++++ D +   ++++SWN+ML  YT NG    A KFF  M +      D+ S+
Sbjct: 240 QCGSLKDSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSF 299

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT--------MLSGYARNGRMLEARRLFD 257
             ++    E    D   +    +  ++ +  VT        M + Y  N  M +A + F+
Sbjct: 300 TSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFN 359

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN----PVSWTTMIDGYVRIAKLDE 313
            + +++ V+WN+M+  Y Q G   +A + F  M   N      +++  +     +A L  
Sbjct: 360 SLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQL 419

Query: 314 ARRLLDQMPYKNIAA----QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ 369
            +++   + +   A+     +++I  Y ++  +D+A + F++      V WN MI GYAQ
Sbjct: 420 GKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQ 479

Query: 370 CGRMDEAINLFRQMVNK----DIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            G+ +    LF +M+ +    D +T+  +I   +    +D+  +I   M
Sbjct: 480 HGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTM 528



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 104/458 (22%), Positives = 202/458 (44%), Gaps = 53/458 (11%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  +  +    K GRV +A ++F  M ++NTV++N++I+ Y ++G +  A +LF +M +
Sbjct: 128 VFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMER 187

Query: 75  RNLVSWNSMIAGY--------------LHNDKVKEARELFDKMFRPDLFSWALMITCYTR 120
             L    +  A                LH   VK    L        L      IT Y++
Sbjct: 188 EGLAPDEATFASLLTAVEGPSCFLMHQLHGKIVKYGSAL-------GLTVLNAAITAYSQ 240

Query: 121 KGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK-----NIVSWN 175
            G L+ +R +FD + +  D   WNAM+  Y   G  +EA K    M  +     ++ S+ 
Sbjct: 241 CGSLKDSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFT 300

Query: 176 SMLSGYTKNGEMHLASKFFEAMEERDVVS-----WNLMLDGYVELDD---LDSAWKFFQK 227
           S++S  +++G      +    +  +  +       N ++  Y   ++   ++ A+K F  
Sbjct: 301 SIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNS 360

Query: 228 IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMI-----AAYVQRG 278
           +  ++ VSW +ML+GY+++G   +A + F  M   NV     A++A +      A +Q G
Sbjct: 361 LVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLG 420

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
           +      +       + VS +++I  Y +   +D+AR+  ++    +     AMI GY Q
Sbjct: 421 KQIHGLVIHSGFASNDFVS-SSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQ 479

Query: 339 NKRMDEANQIFDKI----GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT---- 390
           + + +  + +F+++       D + +  +I   +  G +DE   +   M  K  V     
Sbjct: 480 HGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRME 539

Query: 391 -WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
            +   +  Y +  Q+D A K+ + M    + + W  L+
Sbjct: 540 HYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLL 577


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 184/531 (34%), Positives = 303/531 (57%), Gaps = 32/531 (6%)

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV--VSWVTMLSGYARNGRMLEARRLFDQM 259
           +  +N+ +  + EL +L  A +   + P+ ++   ++ ++L   A    + + RR+   +
Sbjct: 68  ITDYNIEICRFCELGNLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSII 127

Query: 260 PIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR 315
              +V    V  + ++  YV  G + E  R+F ++       W  +++GY +I    E+ 
Sbjct: 128 QSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESL 187

Query: 316 RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
            L  +M    I             +R++ A ++FD++G  DV+ WN MI GY   G  ++
Sbjct: 188 SLFKRMRELGI-------------RRVESARKLFDELGDRDVISWNSMISGYVSNGLSEK 234

Query: 376 AINLFRQM----VNKDIVTW--------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
            ++LF QM    +N D+ T         N ++  Y++   ++ A+++FE MG+R + VSW
Sbjct: 235 GLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGER-SVVSW 293

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
            ++I+G+ +      ++++F  M +E    +  T+AC L ACA LAAL+ G++IH   ++
Sbjct: 294 TSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILR 353

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
           +G+  D  V N+L+ MY KCG +  A LLF      D++SW  +IAGY ++G  +EAI  
Sbjct: 354 NGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAA 413

Query: 544 FEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLS 603
           F EM   G+ PD V+FI +L ACSH GL+D G   F  M     IEP  EHYAC++DLL+
Sbjct: 414 FNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLA 473

Query: 604 RAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYAL 663
           RAG L +A++ +K M I+P+A IWG LL  CR++ ++KL     E + ELEP+ T  Y L
Sbjct: 474 RAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVL 533

Query: 664 LSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQ 714
           L+N++AEA +W+EV+K+R  +   G +K PGCSWIE+K ++H F++GD   
Sbjct: 534 LANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSH 584



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 176/403 (43%), Gaps = 42/403 (10%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           IF + S K  +  +++  + A  G       L  +     +  +N  I  +     ++ A
Sbjct: 32  IFFRPSSKTPLVSSNLYHSCATIG----TSVLPSETIDCKITDYNIEICRFCELGNLRRA 87

Query: 97  RELFDKMFRPDL--FSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYA 151
            EL ++  +PDL   ++  ++        ++  R +  ++ + +   D    + +V  Y 
Sbjct: 88  MELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYV 147

Query: 152 KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
             G+  E +++ D + ++ +  WN +++GY K G    +   F+ M E            
Sbjct: 148 TCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRE------------ 195

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV------- 264
            + +  ++SA K F ++ +++V+SW +M+SGY  NG   +   LF+QM +  +       
Sbjct: 196 -LGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATM 254

Query: 265 -----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLD 319
                   N ++  Y + G +  A ++F  M ER+ VSWT+MI GY R    D + RL  
Sbjct: 255 VSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFH 314

Query: 320 QMP----YKNIAAQTAMISGYVQNKRMDEANQIFDKI----GTHDVVCWNVMIKGYAQCG 371
           +M     + N      ++        ++   +I   I     + D    N ++  Y +CG
Sbjct: 315 EMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCG 374

Query: 372 RMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            +  A  LF  +  KD+V+W  MIAGY       +A+  F EM
Sbjct: 375 ALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEM 417



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 153/326 (46%), Gaps = 56/326 (17%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG------------------RVNDARKLFE 70
           G + E  +IF +++ +    +N +++ YAK G                  RV  ARKLF+
Sbjct: 150 GDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFD 209

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFS-WALMITCYTRKGELEKARE 129
           ++  R+++SWNSMI+GY+ N   ++  +LF++M    + +  A M++      EL     
Sbjct: 210 ELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSV-----ELTLNNC 264

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           L D+                Y+K GN N A ++ + M  +++VSW SM++GY + G   +
Sbjct: 265 LLDM----------------YSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDM 308

Query: 190 ASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKI------PEQNVVSWVTM 239
           + + F  ME+ D+    ++   +L     L  L+   +    I       +++V +   +
Sbjct: 309 SVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVAN--AL 366

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNP 295
           +  Y + G +  AR LFD +P +++V+W  MIA Y   G   EA   F EM     E + 
Sbjct: 367 VDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDE 426

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQM 321
           VS+ +++        LDE     + M
Sbjct: 427 VSFISILYACSHSGLLDEGWGFFNMM 452



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 157/370 (42%), Gaps = 64/370 (17%)

Query: 20  KKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAY----------------------- 56
           K++ +LG   RVE A K+F ++  ++ +++NSMIS Y                       
Sbjct: 191 KRMRELGIR-RVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINT 249

Query: 57  --------------------AKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
                               +K+G +N A ++FE M +R++VSW SMIAGY        +
Sbjct: 250 DLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMS 309

Query: 97  RELFDKMFRPDLFSWALMITCY----TRKGELEKARELF-DLLPN--KEDTACWNAMVAG 149
             LF +M + DLF  ++ + C          LE+ +E+   +L N    D    NA+V  
Sbjct: 310 VRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDM 369

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSW 205
           Y K G    A+ L D +P K++VSW  M++GY  +G    A   F  M     E D VS+
Sbjct: 370 YLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSF 429

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMP 260
             +L        LD  W FF  +     +      +  ++   AR G + +A +    MP
Sbjct: 430 ISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMP 489

Query: 261 IR-NVVAWNAMIAA---YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
           I  +   W A++     Y      E+ A    E+   N   +  + + Y    K +E ++
Sbjct: 490 IEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKK 549

Query: 317 LLDQMPYKNI 326
           L +++  + +
Sbjct: 550 LRERIGRRGL 559


>gi|62733531|gb|AAX95648.1| Tetratricopeptide repeat, putative [Oryza sativa Japonica Group]
          Length = 888

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 201/612 (32%), Positives = 340/612 (55%), Gaps = 20/612 (3%)

Query: 109 FSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS 168
           F++  M+  + + G++  AR LFD +P +   + +  MV    K G+  +A +L    P 
Sbjct: 149 FAYDFMVREHVKAGDIVSARRLFDGMPERSVVS-YTTMVDALMKRGSVRDAVELYRQCPL 207

Query: 169 KNIVSWNSMLSGYTKNGEMHLASKFFEAM-------EERDVVSWNLMLDGYVELDDLDSA 221
            ++  + +M++G+  N     A   F  M        E  +VS      G  E D   S 
Sbjct: 208 CSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSI 267

Query: 222 WKFFQK--IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ 279
                K  + ++N+    ++++ Y R G    ARR+FD+M +R+VV+W A++  Y + G 
Sbjct: 268 VGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGD 327

Query: 280 IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM----PYKNIAAQTAMI-- 333
           +E A R+  EMPERN VSW T++  + +     EA  L  QM       NI+  ++++  
Sbjct: 328 LEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGA 387

Query: 334 SGYVQNKRMDEA--NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTW 391
              +Q+ R      NQ      +++V   + +I  Y +C ++ +A  +F  +  K+IV W
Sbjct: 388 CASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCW 447

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
           N++I+GY+   +M +A ++F++M   RN  SWN++ISG+ QN   +DALK F  M   G+
Sbjct: 448 NSLISGYSNNSKMVEAEELFKKM-PARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQ 506

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL 511
                T +  L ACA L +L++G+ +H   IK G    +FVG +L  MYAK G + +++ 
Sbjct: 507 SPGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKR 566

Query: 512 LFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
           +F +    + ++W ++I G A NG A E+I LFE+M+  G+ P+  TF+ +L ACSH GL
Sbjct: 567 VFYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGL 626

Query: 572 VDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           V+  +  FE M +   I P  +HY CM+D+L+RAG L EA +++  ++ K  A  W  LL
Sbjct: 627 VEHAMHYFE-MMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALL 685

Query: 632 GACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQK 691
            AC +++N ++G  A ++L EL+   T+ Y LLSNM+A  G+W +  ++R+ M+G   +K
Sbjct: 686 SACNIYRNKEMGERAAKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKK 745

Query: 692 QPGCSWIEVKNQ 703
             GCSW++++++
Sbjct: 746 DGGCSWVQIRDE 757



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 141/548 (25%), Positives = 255/548 (46%), Gaps = 65/548 (11%)

Query: 49  YNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL 108
           Y+ M+  + K G +  AR+LF+ MP+R++VS+ +M+   +    V++A EL+ +     +
Sbjct: 151 YDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSV 210

Query: 109 FSWALMITCYTRKGELEKARELFDLL------PNKEDTACWNAMVAGYAKIGNYNEAKKL 162
             +  MI  +      + A  +F  +      PN+       +++      G ++ A  +
Sbjct: 211 PFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLV---SVIKACIGAGEFDLAMSI 267

Query: 163 LD-AMPS----KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDD 217
           +  AM S    KN+   NS+++ Y + G+   A + F+ ME RDVVSW  +LD Y EL D
Sbjct: 268 VGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGD 327

Query: 218 LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM------------------ 259
           L+ A +   ++PE+N VSW T+++ + + G   EA  L+ QM                  
Sbjct: 328 LEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGA 387

Query: 260 -----PIR----------------NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW 298
                 +R                NV   +A+I  Y +  Q+ +A  +F  +P++N V W
Sbjct: 388 CASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCW 447

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI-----G 353
            ++I GY   +K+ EA  L  +MP +N+A+  ++ISGY QN++  +A + F  +      
Sbjct: 448 NSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQS 507

Query: 354 THDVVCWNVMIKGYAQC----GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVK 409
             ++   +V++   + C    G+M  A  + +  + + I     +   YA+   +D + +
Sbjct: 508 PGEITFSSVLLACASLCSLEMGKMVHA-KIIKLGIKESIFVGTALSDMYAKSGDLDSSKR 566

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           +F EM K RN V+W A+I G  +N F  +++ +F  M   G   +  T    L AC+H  
Sbjct: 567 VFYEMPK-RNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSG 625

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE-LLFKDADPVDVISWNSLI 528
            ++       +    G          ++ + A+ G +  AE LL K     +  SW +L+
Sbjct: 626 LVEHAMHYFEMMQACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALL 685

Query: 529 AGYAINGN 536
           +   I  N
Sbjct: 686 SACNIYRN 693



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 138/583 (23%), Positives = 265/583 (45%), Gaps = 111/583 (19%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K+G +  A ++F  M +++ V+Y +M+ A  K G V DA +L+ Q P  ++  + +MIAG
Sbjct: 160 KAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPLCSVPFFTAMIAG 219

Query: 87  YLHNDKVKEARELFDKMFRPDL-------------------FSWAL-------------- 113
           ++ N+  K+A  +F +M    +                   F  A+              
Sbjct: 220 FVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSNLLDK 279

Query: 114 -------MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
                  +IT Y RKG+ + AR +FD +  + D   W A++  YA++G+   A+++LD M
Sbjct: 280 NLGVRNSLITLYLRKGDADAARRMFDEMEVR-DVVSWTALLDVYAELGDLEGARRVLDEM 338

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAME---------------------------- 198
           P +N VSW ++++ + + G    A   +  M                             
Sbjct: 339 PERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGR 398

Query: 199 -----------ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
                        +V   + ++D Y +   L  A   F  +P++N+V W +++SGY+ N 
Sbjct: 399 KIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNS 458

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM--PERNP--VSWTTMID 303
           +M+EA  LF +MP RNV +WN++I+ Y Q  Q  +A + F  M    ++P  +++++++ 
Sbjct: 459 KMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLL 518

Query: 304 GYVRIAKLDEAR----RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
               +  L+  +    +++     ++I   TA+   Y ++  +D + ++F ++   + V 
Sbjct: 519 ACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVA 578

Query: 360 WNVMIKGYAQCGRMDEAINLFRQMVNKDIV----TWNTMIAGYAQIRQMDDAVKIFEEM- 414
           W  MI+G A+ G  +E+I LF  M++  I     T+  ++   +    ++ A+  FE M 
Sbjct: 579 WTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQ 638

Query: 415 --GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQ 472
             G       +  ++   L    HL   +  +L  +   K++ ++ A  LSAC      +
Sbjct: 639 ACGISPKAKHYTCMVD-VLARAGHLAEAEDLLLKIE--SKSEANSWAALLSACNIYRNKE 695

Query: 473 LG----RQIHHLAI--KSGYVNDLFVGNSLITMYAKCGRIQNA 509
           +G    +++  L     +GYV        L  MYA CG+ ++A
Sbjct: 696 MGERAAKRLQELDKDNTAGYV-------LLSNMYASCGKWKDA 731



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 120/469 (25%), Positives = 224/469 (47%), Gaps = 38/469 (8%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           +N  IT   + G  + A ++F +M  ++ V++ +++  YA+ G +  AR++ ++MP+RN 
Sbjct: 284 RNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGARRVLDEMPERNE 343

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDL 133
           VSW +++A +      KEA  L+ +M     RP++  ++ ++       +L   R++ + 
Sbjct: 344 VSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRSGRKIHN- 402

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDA------MPSKNIVSWNSMLSGYTKNGEM 187
                  AC N +    A I  Y + K+L DA      +P KNIV WNS++SGY+ N +M
Sbjct: 403 --QTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKM 460

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI------PEQNVVSWVTMLS 241
             A + F+ M  R+V SWN ++ GY +      A K F  +      P +   S V +  
Sbjct: 461 VEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLAC 520

Query: 242 GYARN---GRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
               +   G+M+ A+ +  ++ I+ ++    A+   Y + G ++ + R+F EMP+RN V+
Sbjct: 521 ASLCSLEMGKMVHAKII--KLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVA 578

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAA--QT--AMISGYVQNKRMDEANQIFDKIG 353
           WT MI G       +E+  L + M    I    QT  A++     +  ++ A   F+ + 
Sbjct: 579 WTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQ 638

Query: 354 THDVVC----WNVMIKGYAQCGRMDEAINLFRQMVNK-DIVTWNTMIAG---YAQIRQMD 405
              +      +  M+   A+ G + EA +L  ++ +K +  +W  +++    Y      +
Sbjct: 639 ACGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGE 698

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
            A K  +E+ K  NT  +  L + +       DA ++ +LM     K D
Sbjct: 699 RAAKRLQELDK-DNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKD 746



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 151/324 (46%), Gaps = 23/324 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  +  I    K  ++ +A  IF  + QKN V +NS+IS Y+ N ++ +A +LF++MP 
Sbjct: 413 VFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAEELFKKMPA 472

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPD------LFSWALMIT---CYTRKGELE 125
           RN+ SWNS+I+GY  N +  +A + F  M           FS  L+     C    G++ 
Sbjct: 473 RNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACASLCSLEMGKMV 532

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
            A+ +   L  KE      A+   YAK G+ + +K++   MP +N V+W +M+ G  +NG
Sbjct: 533 HAKII--KLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLAENG 590

Query: 186 EMHLASKFFEAMEERDVV----SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS----WV 237
               +   FE M    +     ++  +L        ++ A  +F+ +    +      + 
Sbjct: 591 FAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQACGISPKAKHYT 650

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVV-AWNAMIAA---YVQRGQIEEAARLFIEMPER 293
            M+   AR G + EA  L  ++  ++   +W A+++A   Y  +   E AA+   E+ + 
Sbjct: 651 CMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLSACNIYRNKEMGERAAKRLQELDKD 710

Query: 294 NPVSWTTMIDGYVRIAKLDEARRL 317
           N   +  + + Y    K  +A  +
Sbjct: 711 NTAGYVLLSNMYASCGKWKDAAEM 734



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 125/282 (44%), Gaps = 39/282 (13%)

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIF 411
           +G      ++ M++ + + G +  A  LF  M  + +V++ TM+    +   + DAV+++
Sbjct: 143 VGAASPFAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELY 202

Query: 412 EEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAAL 471
            +     +   + A+I+GF+ NE   DAL +F  M   G   +  TL   + AC      
Sbjct: 203 RQC-PLCSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEF 261

Query: 472 QLGRQIHHLAIKSGYVN-DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
            L   I  LA+KS  ++ +L V NSLIT+Y + G    A  +F + +  DV+SW +L+  
Sbjct: 262 DLAMSIVGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDV 321

Query: 531 YA-------------------------------INGNATEAIKLFEEMVMEGVAPDPVTF 559
           YA                                 GNA EA+ L+ +M+ +G  P+   F
Sbjct: 322 YAELGDLEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCF 381

Query: 560 IGVLSACSHVGLVDGGLKL------FECMTEVYAIEPLVEHY 595
             VL AC+ +  +  G K+        C   V+    L++ Y
Sbjct: 382 SSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMY 423


>gi|222626149|gb|EEE60281.1| hypothetical protein OsJ_13335 [Oryza sativa Japonica Group]
          Length = 1135

 Score =  350 bits (898), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 202/632 (31%), Positives = 333/632 (52%), Gaps = 51/632 (8%)

Query: 152 KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV----SWNL 207
           K G   +A  L D MP KN+V+W S++SGYT+NG    A   F  M E  V     + N 
Sbjct: 60  KSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNA 119

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVV--SWV--TMLSGYARNGRMLEARRLFDQMPIRN 263
            L    +L  L +  +             +W+   ++  Y+R G +  A+ +FD+M   +
Sbjct: 120 ALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPD 179

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLD 319
           VV + ++I+A+ + G+ E AA   I+M ++    N  + TT++    R+        L+ 
Sbjct: 180 VVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIK 239

Query: 320 QMPYKN--IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAI 377
           ++  ++  + + TA+I  Y +N     A  +FD +   +VV W  M++ Y + GR++EA+
Sbjct: 240 KIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEAL 299

Query: 378 NLFRQMVNK------------------------------------DIVTWNTMIAGYAQI 401
            +F  M+++                                    DI   N +++ Y + 
Sbjct: 300 QVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRT 359

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
             +++   +  ++ +  + VSW   IS   QN F   A+ +   M  EG   +    +  
Sbjct: 360 GLVEELEAMLNKI-ENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSV 418

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           LS+CA +A+L  G Q H LA+K G  +++  GN+LI MY+KCG++ +A L F      DV
Sbjct: 419 LSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDV 478

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC 581
            SWNSLI G+A +G+A +A+++F +M   G+ PD  TF+GVL  C+H G+V+ G   F  
Sbjct: 479 TSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRL 538

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIK 641
           M + Y+  P   HYACMID+L R GR DEA  M+  M  +P+A IW TLL +C++H+N+ 
Sbjct: 539 MIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLD 598

Query: 642 LGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVK 701
           +G++A ++L EL  + ++ Y L+SN++A  G W++  KVR  M+ +G +K  GCSWIE+ 
Sbjct: 599 IGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEIN 658

Query: 702 NQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           N++HTF S D     +  I   L  L A +++
Sbjct: 659 NEVHTFASRDMSHPNSDSIYQMLGELVAVMQD 690



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 151/613 (24%), Positives = 258/613 (42%), Gaps = 118/613 (19%)

Query: 20  KKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV- 78
           K++ +L KSGR+ +A+ +F +M +KN V + S++S Y +NGR   A  +F  M +  +  
Sbjct: 53  KRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAP 112

Query: 79  ------------------------------------SW--NSMIAGYLHNDKVKEARELF 100
                                               +W  + +I  Y     +  A+E+F
Sbjct: 113 NDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVF 172

Query: 101 DKMFRPDLFSWALMITCYTRKGELEKARELF------DLLPNKED-----TACWNAM--- 146
           D+M  PD+  +  +I+ + R GE E A E         L PN+       TAC   +   
Sbjct: 173 DRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQ 232

Query: 147 VAGY--AKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS 204
           + GY   KIG           + S+++ S  +++  Y++NGE  LA   F+++  ++VVS
Sbjct: 233 IHGYLIKKIG-----------LRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVS 281

Query: 205 WNLMLDGYVELDDLDSAWKFFQKI------PEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
           W  M+  Y+    L+ A + F  +      P +  +S V    G    GR L    +   
Sbjct: 282 WCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHD 341

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
           + I ++   NA+++ Y + G +EE   +  ++   + VSWTT I    +    ++A  LL
Sbjct: 342 L-ITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALL 400

Query: 319 DQMPYK----NIAAQTAMISGYVQNKRMDEANQIFD---KIGTHDVVC-WNVMIKGYAQC 370
            QM  +    N  A ++++S       +D+  Q      K+G    +C  N +I  Y++C
Sbjct: 401 CQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKC 460

Query: 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
           G+M  A   F  M   D+ +WN++I G+A   Q  DA K                     
Sbjct: 461 GQMGSARLAFDVMHTHDVTSWNSLIHGHA---QHGDANK--------------------- 496

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI-KSGYVND 489
                   AL++F  M   G K D ST    L  C H   ++ G     L I +  +   
Sbjct: 497 --------ALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPA 548

Query: 490 LFVGNSLITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
                 +I M  + GR   A  +  D   +P D + W +L+A   ++ N  +  KL  + 
Sbjct: 549 PSHYACMIDMLGRNGRFDEALRMINDMPFEP-DALIWKTLLASCKLHRN-LDIGKLAADR 606

Query: 548 VMEGVAPDPVTFI 560
           +ME    D  +++
Sbjct: 607 LMELSDRDSASYV 619



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 157/351 (44%), Gaps = 53/351 (15%)

Query: 5   LKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND 64
           +K IG +   V++    I    ++G  + A  +F  +  KN V++ SM+  Y ++GR+ +
Sbjct: 238 IKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEE 297

Query: 65  ARKLFEQM------P--------------------------QRNLVS----WNSMIAGYL 88
           A ++F  M      P                          + +L++     N++++ Y 
Sbjct: 298 ALQVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYG 357

Query: 89  HNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTA---CWNA 145
               V+E   + +K+  PDL SW   I+   + G  EKA  L   + ++  T     +++
Sbjct: 358 RTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSS 417

Query: 146 MVAGYAKIGNYNEAKKL----LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
           +++  A + + ++  +     L       I + N++++ Y+K G+M  A   F+ M   D
Sbjct: 418 VLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHD 477

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEA----R 253
           V SWN ++ G+ +  D + A + F K+    +     +++ +L G   +G + E     R
Sbjct: 478 VTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFR 537

Query: 254 RLFDQMPIRNVVA-WNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMI 302
            + DQ       + +  MI    + G+ +EA R+  +MP E + + W T++
Sbjct: 538 LMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLL 588


>gi|90657601|gb|ABD96900.1| hypothetical protein [Cleome spinosa]
          Length = 924

 Score =  350 bits (898), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 237/803 (29%), Positives = 398/803 (49%), Gaps = 98/803 (12%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  N  +      G +  A K+F  M  ++ V++N+MI  YA +  +  A   FE MP 
Sbjct: 84  VFVSNCLLQLYINCGNLGYATKLFDGMPLRDVVSWNAMIFGYAASNDMVRASLCFEMMPT 143

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL------FSWALMITCYTRKGELEKAR 128
           R++VSWNSM++G+L   +  E+ ++F +M R  +      FS  L +       +L    
Sbjct: 144 RDVVSWNSMLSGFLQTGENLESVKVFIEMGRSGVEFDNKSFSVILKVCSILENYKLGTQI 203

Query: 129 ELFDL-LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
               L +    D    +A++  YAK    +E+  +  AMP KN +SW+++++G  +N  +
Sbjct: 204 HGIALRMGYDTDVVSGSALLDMYAKCKRLDESFTVFYAMPQKNWISWSAIIAGCVQNNFL 263

Query: 188 HLASKFFEAMEERDV-VSWNL---MLDGYVELDDLDSAWKFFQKIPEQNVVS----WVTM 239
               K F+ M++  V VS ++   +L     L DL    +      + + V         
Sbjct: 264 DGGLKMFKEMQKVGVGVSQSIYASVLKSCATLPDLRLGTQLHAHALKSDFVKDGIVRTAT 323

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE------- 292
           L  YA+   M +A+RLFD     N+ ++NAMI  Y Q+     A  LF ++ +       
Sbjct: 324 LDMYAKCNNMQDAQRLFDMSENLNLQSYNAMITGYSQKDNGFRALLLFRKLSKSSLGFDE 383

Query: 293 --------------------------------RNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
                                           RN       ID Y +   LDEA R+ D+
Sbjct: 384 ISLSGALRACATVKGLSEGLQLHGLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDE 443

Query: 321 MPYKNIAAQTAMISGYVQNKRMD------------------------------------- 343
           M  K+  +  A+I+ + QN+                                        
Sbjct: 444 MGRKDAVSWNAIIAAHEQNEERSKTLNILVSMLRSGMEPDEYTFGSVLKACAGDSLNHGM 503

Query: 344 EANQIFDKIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIR 402
           E +    K+G   +    + ++  Y++CG +DEA  +  ++    I   NT    Y++  
Sbjct: 504 EIHTTIVKLGMASNPYIGSSLVDMYSKCGMIDEAEKIHNKIF-IGIGDSNT----YSEHP 558

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
           +  +  K  ++   +   VSWNA+ISG++  +   DA + F  M + G   D  T +  L
Sbjct: 559 ETIEEPKGIQDRRVQEMIVSWNAIISGYVMRKQSEDAQRFFNRMMEMGITPDKFTYSTVL 618

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
             CA+LA++ LG+QIH   IK     D+++ ++L+ MY+KCG + ++ L+F+ A   D +
Sbjct: 619 DTCANLASIGLGKQIHAHVIKKELQYDVYICSTLVDMYSKCGNLHDSRLMFEKAPIRDFV 678

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           +WN++I GYA +G   EAIKLFE MV+  + P+  TF+ +L AC+H+GLV+ GL  F  M
Sbjct: 679 TWNAMICGYAHHGMGEEAIKLFESMVLMNIMPNHATFVSLLRACAHMGLVERGLDYFHMM 738

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQ-NIK 641
            + Y ++P +EHY+ M+D+L ++G +++A E+++ M  + +  IW TLL AC++++ N++
Sbjct: 739 KKEYGLDPRLEHYSNMVDILGKSGEVEKALELIQEMPFEADDVIWRTLLSACKINRNNVE 798

Query: 642 LGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVK 701
              +A   L  L+PQ +S Y LLSN++A+AG WD+  ++R +M     +K+PGCSW+E++
Sbjct: 799 AAEVAANALLRLDPQDSSTYILLSNIYADAGMWDKASELRTAMRSDKLKKEPGCSWVEIR 858

Query: 702 NQIHTFLSGDPKQCRTAEICNTL 724
           ++ HTFL GD    R  EI N L
Sbjct: 859 DEFHTFLVGDKAHPRWKEIYNGL 881



 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 167/646 (25%), Positives = 282/646 (43%), Gaps = 118/646 (18%)

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           FRP +F    ++  Y   G L  A +LFD +P + D   WNAM+ GYA   +   A    
Sbjct: 80  FRPTVFVSNCLLQLYINCGNLGYATKLFDGMPLR-DVVSWNAMIFGYAASNDMVRASLCF 138

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM-------------------------- 197
           + MP++++VSWNSMLSG+ + GE   + K F  M                          
Sbjct: 139 EMMPTRDVVSWNSMLSGFLQTGENLESVKVFIEMGRSGVEFDNKSFSVILKVCSILENYK 198

Query: 198 -------------EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYA 244
                         + DVVS + +LD Y +   LD ++  F  +P++N +SW  +++G  
Sbjct: 199 LGTQIHGIALRMGYDTDVVSGSALLDMYAKCKRLDESFTVFYAMPQKNWISWSAIIAGCV 258

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE--------RNPV 296
           +N  +    ++F +M    V    ++ A+ ++        RL  ++          ++ +
Sbjct: 259 QNNFLDGGLKMFKEMQKVGVGVSQSIYASVLKSCATLPDLRLGTQLHAHALKSDFVKDGI 318

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT-- 354
             T  +D Y +   + +A+RL D     N+ +  AMI+GY Q      A  +F K+    
Sbjct: 319 VRTATLDMYAKCNNMQDAQRLFDMSENLNLQSYNAMITGYSQKDNGFRALLLFRKLSKSS 378

Query: 355 --HDVVCWNVMIKGYAQCGRMDEAINLF----RQMVNKDIVTWNTMIAGYAQIRQMDDAV 408
              D +  +  ++  A    + E + L     +   +++I   N  I  Y +   +D+A 
Sbjct: 379 LGFDEISLSGALRACATVKGLSEGLQLHGLATKSNFSRNICVANAFIDMYGKCEALDEAC 438

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
           ++F+EMG R++ VSWNA+I+   QNE     L I V M + G + D  T    L ACA  
Sbjct: 439 RVFDEMG-RKDAVSWNAIIAAHEQNEERSKTLNILVSMLRSGMEPDEYTFGSVLKACAG- 496

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK-------DADPVD- 520
            +L  G +IH   +K G  ++ ++G+SL+ MY+KCG I  AE +         D++    
Sbjct: 497 DSLNHGMEIHTTIVKLGMASNPYIGSSLVDMYSKCGMIDEAEKIHNKIFIGIGDSNTYSE 556

Query: 521 -------------------VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIG 561
                              ++SWN++I+GY +   + +A + F  M+  G+ PD  T+  
Sbjct: 557 HPETIEEPKGIQDRRVQEMIVSWNAIISGYVMRKQSEDAQRFFNRMMEMGITPDKFTYST 616

Query: 562 VLSACSHVGLVDGGLKLF------ECMTEVYAIEPLVEHYA------------------- 596
           VL  C+++  +  G ++       E   +VY    LV+ Y+                   
Sbjct: 617 VLDTCANLASIGLGKQIHAHVIKKELQYDVYICSTLVDMYSKCGNLHDSRLMFEKAPIRD 676

Query: 597 -----CMIDLLSRAGRLDEA---FEMVKGMKIKPNAGIWGTLLGAC 634
                 MI   +  G  +EA   FE +  M I PN   + +LL AC
Sbjct: 677 FVTWNAMICGYAHHGMGEEAIKLFESMVLMNIMPNHATFVSLLRAC 722



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 99/236 (41%), Gaps = 49/236 (20%)

Query: 440 LKIFVLMT----QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS 495
           ++IF + T     E      +  +     CA   A +LG+Q H   I SG+   +FV N 
Sbjct: 30  VRIFSISTASVNHEKPATSVANFSFVFKECAKQRAHELGKQAHAHMIISGFRPTVFVSNC 89

Query: 496 LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN--------------------- 534
           L+ +Y  CG +  A  LF      DV+SWN++I GYA +                     
Sbjct: 90  LLQLYINCGNLGYATKLFDGMPLRDVVSWNAMIFGYAASNDMVRASLCFEMMPTRDVVSW 149

Query: 535 ----------GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
                     G   E++K+F EM   GV  D  +F  +L  CS        L+ ++  T+
Sbjct: 150 NSMLSGFLQTGENLESVKVFIEMGRSGVEFDNKSFSVILKVCSI-------LENYKLGTQ 202

Query: 585 VYAI------EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGAC 634
           ++ I      +  V   + ++D+ ++  RLDE+F +   M  K N   W  ++  C
Sbjct: 203 IHGIALRMGYDTDVVSGSALLDMYAKCKRLDESFTVFYAMPQK-NWISWSAIIAGC 257


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  350 bits (898), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 222/757 (29%), Positives = 374/757 (49%), Gaps = 77/757 (10%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR---- 105
           N++I+ Y++ GR+ DA ++F+ M  R+ +SWNSMI G   N     A +LF KM+     
Sbjct: 243 NALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTE 302

Query: 106 ----------PDLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVAGYAK 152
                     P        +      G   K+  L+ L       +D A  + +V  Y K
Sbjct: 303 ISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVK 362

Query: 153 IGNYNEAKKLLDAMPSK-NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV----SWNL 207
            G+   A+++ DAM SK N+  WN ++ GY K GE   +   F  M E  +     + + 
Sbjct: 363 CGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISC 422

Query: 208 MLDGYVEL----DDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRN 263
           +L     L    D L +     +            ++S YA++  + +A  +F++MP ++
Sbjct: 423 LLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQD 482

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARRLLD 319
            ++WN++I+     G   EA  LFI M     E + V+  +++    + ++   A R++ 
Sbjct: 483 TISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQ-SRYWFAGRVVH 541

Query: 320 QMPYKN-----IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMD 374
               K       +   A++  Y         NQIF  +G  +VV W  MI  Y + G  D
Sbjct: 542 GYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFD 601

Query: 375 EAINLFRQMV---------------------------------------NKDIVTWNTMI 395
           +   L ++MV                                        K +   N ++
Sbjct: 602 KVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALM 661

Query: 396 AGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADH 455
             Y + R +++A  IF+ +   ++ +SWN LI G+ +N F  ++  +F  M  +  + + 
Sbjct: 662 EMYVKCRNVEEARLIFDRV-TNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ-FRPNA 719

Query: 456 STLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD 515
            T+ C L A A +++L+ GR+IH  A++ G++ D +  N+L+ MY KCG +  A +LF  
Sbjct: 720 VTMTCILPAAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDR 779

Query: 516 ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
               ++ISW  +IAGY ++G    AI LFE+M   G+ PD  +F  +L AC H GL   G
Sbjct: 780 LTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEG 839

Query: 576 LKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACR 635
            + F+ M + Y IEP ++HY C++DLLSR G L EA E ++ M I+P++ IW +LL  CR
Sbjct: 840 RRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHGCR 899

Query: 636 MHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGC 695
           +H+N+KL     +K+ +LEP+ T  Y LL+N++AEA RW+ V+K++  + G G ++  G 
Sbjct: 900 IHKNVKLAEKVADKVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGY 959

Query: 696 SWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           SWIEV++++H F++ +        I   L  +A ++R
Sbjct: 960 SWIEVRSKVHVFIADNRNHPDWNRIAEFLDDVARRMR 996



 Score =  202 bits (514), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 201/806 (24%), Positives = 344/806 (42%), Gaps = 127/806 (15%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQM---------SQKNTVTYNS 51
           +  +L+ +G+ G         + QL    R  EA K    +           K +V    
Sbjct: 82  LAGALRLLGSDGGVDVRSYCMVVQLCGEERSLEAAKRAHALIRASSAAATGGKGSVLGKR 141

Query: 52  MISAYAKNGRVNDARKLFEQMPQR--NLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           ++ AY K G + +AR +F+ MP +  ++  W S+++ Y      +EA  LF +M      
Sbjct: 142 LVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVS 201

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL 162
           PD  + + ++ C +  G L +   +  LL      +  A  NA++A Y++ G   +A ++
Sbjct: 202 PDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARV 261

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM--EERDVVSWNLM------------ 208
            D+M  ++ +SWNSM+ G   NG    A   F  M  +  ++ S  ++            
Sbjct: 262 FDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYG 321

Query: 209 -----LDGYVELDDLDSAWKFFQK-IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR 262
                + GY     L       Q  I +  + S +  +  Y + G M  ARR+FD M  +
Sbjct: 322 LIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFM--YVKCGDMASARRVFDAMSSK 379

Query: 263 -NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVR-IAKLDEARRLLDQ 320
            NV  WN ++  Y + G+ EE+  LF++M E         I   ++ I  L  AR  L  
Sbjct: 380 GNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVA 439

Query: 321 MPY-------KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRM 373
             Y          A   A+IS Y ++  + +A  +F+++   D + WN +I G +  G  
Sbjct: 440 HGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLN 499

Query: 374 DEAINLFRQMVNK----DIVTWNTMIAGYAQIR---------------------QMDDAV 408
            EAI LF +M  +    D VT  +++   AQ R                      + +A+
Sbjct: 500 SEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANAL 559

Query: 409 --------------KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
                         +IF  MG+ +N VSW A+I+ +++         +   M  +G + D
Sbjct: 560 LDMYSNCSDWQSTNQIFRSMGQ-KNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPD 618

Query: 455 HSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
              +  AL A A   +L+ G+ +H   I++G    L V N+L+ MY KC  ++ A L+F 
Sbjct: 619 VFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFD 678

Query: 515 DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574
                DVISWN+LI GY+ N    E+  LF +M+++   P+ VT   +L A + +  ++ 
Sbjct: 679 RVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPAAASISSLER 737

Query: 575 GLKLFE------CMTEVYAIEPLVEHYA-CMIDLLSRA--GRLDEA-------------- 611
           G ++         + + YA   LV+ Y  C   L++R    RL +               
Sbjct: 738 GREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGM 797

Query: 612 ----------FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR---IAVEKLSELEPQKT 658
                     FE ++G  I+P+A  +  +L AC        GR    A++K  ++EP K 
Sbjct: 798 HGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEP-KL 856

Query: 659 SCYALLSNMHAEAGRWDEVEKVRVSM 684
             Y  + ++ +  G   E  +   SM
Sbjct: 857 KHYTCIVDLLSRTGDLKEALEFIESM 882



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 109/469 (23%), Positives = 210/469 (44%), Gaps = 57/469 (12%)

Query: 36   KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP----QRNLVSWNSMIAGYLHND 91
            +IF  M QKN V++ +MI++Y + G  +    L ++M     + ++ +  S +  +  ++
Sbjct: 574  QIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDE 633

Query: 92   KVKEARELFDKMFRPDL-----FSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
             +K+ + +     R  +      + ALM   Y +   +E+AR +FD + NK D   WN +
Sbjct: 634  SLKQGKSVHGYTIRNGMEKLLPVANALM-EMYVKCRNVEEARLIFDRVTNK-DVISWNTL 691

Query: 147  VAGYAKIGNYNEAKKLL---------DAMPSKNIVSWNSMLSGYTKNGEMH---LASKFF 194
            + GY++    NE+  L          +A+    I+   + +S   +  E+H   L   F 
Sbjct: 692  IGGYSRNNFPNESFSLFSDMLLQFRPNAVTMTCILPAAASISSLERGREIHAYALRRGFL 751

Query: 195  EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
            E     D  + N ++D YV+   L  A   F ++ ++N++SW  M++GY  +G    A  
Sbjct: 752  E-----DSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIA 806

Query: 255  LFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGY 305
            LF+QM    +     +++A++ A    G   E  R F  M +   +      +T ++D  
Sbjct: 807  LFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLL 866

Query: 306  VRIAKLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKI---GTHDVVCWN 361
             R   L EA   ++ MP + + +   +++ G   +K +  A ++ DK+      +   + 
Sbjct: 867  SRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYV 926

Query: 362  VMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
            ++   YA+  R  EA+   +  +    +  NT   GY+ I ++   V +F  +   RN  
Sbjct: 927  LLANIYAEAERW-EAVKKLKNKIGGRGLRENT---GYSWI-EVRSKVHVF--IADNRNHP 979

Query: 422  SWNAL------ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSA 464
             WN +      ++  ++ E H D  K + LM  +   A H    C  S+
Sbjct: 980  DWNRIAEFLDDVARRMRQEGH-DPKKKYALMGAD--DAVHDEALCGHSS 1025



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 76/158 (48%), Gaps = 9/158 (5%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP-- 73
           +  N  +    K G +  A  +F ++++KN +++  MI+ Y  +G    A  LFEQM   
Sbjct: 755 YASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGS 814

Query: 74  --QRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEK 126
             + +  S+++++    H+    E R  F  M       P L  +  ++   +R G+L++
Sbjct: 815 GIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKE 874

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLD 164
           A E  + +P + D++ W +++ G     N   A+K+ D
Sbjct: 875 ALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVAD 912


>gi|334186228|ref|NP_191896.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646951|gb|AEE80472.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 884

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 231/746 (30%), Positives = 365/746 (48%), Gaps = 70/746 (9%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPD 107
           ++  Y K G ++DA K+F++MP R   +WN+MI  Y+ N +   A  L+  M        
Sbjct: 122 LVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLG 181

Query: 108 LFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLD 164
           L S+  ++    +  ++    EL  LL            NA+V+ YAK  + + A++L D
Sbjct: 182 LSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFD 241

Query: 165 AMPSK-NIVSWNSMLSGYTKNG----------EMHLASKFFEAMEERDVVSWNLMLDG-- 211
               K + V WNS+LS Y+ +G          EMH+      A     +VS     DG  
Sbjct: 242 GFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGP---APNSYTIVSALTACDGFS 298

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
           Y +L     A           +     +++ Y R G+M +A R+  QM   +VV WN++I
Sbjct: 299 YAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLI 358

Query: 272 AAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARRL----LDQMPY 323
             YVQ    +EA   F +M     + + VS T++I    R++ L     L    +     
Sbjct: 359 KGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWD 418

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
            N+     +I  Y +        + F ++   D++ W  +I GYAQ     EA+ LFR +
Sbjct: 419 SNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDV 478

Query: 384 VNK--------------------------------------DIVTWNTMIAGYAQIRQMD 405
             K                                      D V  N ++  Y + R M 
Sbjct: 479 AKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTVIQNELVDVYGKCRNMG 538

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
            A ++FE + K ++ VSW ++IS    N    +A+++F  M + G  AD   L C LSA 
Sbjct: 539 YATRVFESI-KGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAA 597

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
           A L+AL  GR+IH   ++ G+  +  +  +++ MYA CG +Q+A+ +F   +   ++ + 
Sbjct: 598 ASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYT 657

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
           S+I  Y ++G    A++LF++M  E V+PD ++F+ +L ACSH GL+D G    + M   
Sbjct: 658 SMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHE 717

Query: 586 YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI 645
           Y +EP  EHY C++D+L RA  + EAFE VK MK +P A +W  LL ACR H   ++G I
Sbjct: 718 YELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEI 777

Query: 646 AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705
           A ++L ELEP+      L+SN+ AE GRW++VEKVR  M+ SG +K PGCSWIE+  ++H
Sbjct: 778 AAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVH 837

Query: 706 TFLSGDPKQCRTAEICNTLKTLAAQI 731
            F + D     + EI   L  +  ++
Sbjct: 838 KFTARDKSHPESKEIYEKLSEVTRKL 863



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 150/568 (26%), Positives = 264/568 (46%), Gaps = 71/568 (12%)

Query: 109 FSWALMITCYTRKGELEKAREL----FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLD 164
           F++ L + C  R+  + + R+L    F   P+ E       +V  Y K G+ ++A+K+ D
Sbjct: 83  FAYVLEL-CGKRRA-VSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFD 140

Query: 165 AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDS 220
            MP +   +WN+M+  Y  NGE   A   +  M    V     S+  +L    +L D+ S
Sbjct: 141 EMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRS 200

Query: 221 AWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYV 275
             +    + +    S       ++S YA+N  +  ARRLFD    + + V WN+++++Y 
Sbjct: 201 GSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYS 260

Query: 276 QRGQIEEAARLFIEMPERNP-------VSWTTMIDG--YVRIAKLDEARRLLDQMPYKNI 326
             G+  E   LF EM    P       VS  T  DG  Y ++ K   A  L        +
Sbjct: 261 TSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSEL 320

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV-- 384
               A+I+ Y +  +M +A +I  ++   DVV WN +IKGY Q     EA+  F  M+  
Sbjct: 321 YVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAA 380

Query: 385 --NKDIVTWNTMIAGYAQIRQM----------------------DDAVKIFEE------M 414
               D V+  ++IA   ++  +                      +  + ++ +      M
Sbjct: 381 GHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYM 440

Query: 415 GKR------RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
           G+       ++ +SW  +I+G+ QN+ H++AL++F  + ++  + D   L   L A + L
Sbjct: 441 GRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVL 500

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
            ++ + ++IH   ++ G + D  + N L+ +Y KC  +  A  +F+     DV+SW S+I
Sbjct: 501 KSMLIVKEIHCHILRKGLL-DTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMI 559

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG-------LKLFEC 581
           +  A+NGN +EA++LF  MV  G++ D V  + +LSA + +  ++ G       L+   C
Sbjct: 560 SSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFC 619

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRLD 609
           +    A+  +V+ YAC  DL S     D
Sbjct: 620 LEGSIAV-AVVDMYACCGDLQSAKAVFD 646



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 94/425 (22%), Positives = 175/425 (41%), Gaps = 58/425 (13%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
           + AS+       S ++  N  I    + G++ +A +I  QM+  + VT+NS+I  Y +N 
Sbjct: 306 IHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNL 365

Query: 61  RVNDARKLFEQM----PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP---------- 106
              +A + F  M     + + VS  S+IA       +    EL   + +           
Sbjct: 366 MYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGN 425

Query: 107 ---DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKL- 162
              D++S    +TCY  +  L           + +D   W  ++AGYA+   + EA +L 
Sbjct: 426 TLIDMYS-KCNLTCYMGRAFLRM---------HDKDLISWTTVIAGYAQNDCHVEALELF 475

Query: 163 ---------LDAMPSKNIVSWNSMLSG--YTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
                    +D M   +I+  +S+L      K    H+  K        D V  N ++D 
Sbjct: 476 RDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-----LDTVIQNELVDV 530

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
           Y +  ++  A + F+ I  ++VVSW +M+S  A NG   EA  LF +M    + A +  +
Sbjct: 531 YGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVAL 590

Query: 272 ---------AAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
                     + + +G+      L         ++   ++D Y     L  A+ + D++ 
Sbjct: 591 LCILSAAASLSALNKGREIHCYLLRKGFCLEGSIA-VAVVDMYACCGDLQSAKAVFDRIE 649

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV----VCWNVMIKGYAQCGRMDEAIN 378
            K +   T+MI+ Y  +     A ++FDK+   +V    + +  ++   +  G +DE   
Sbjct: 650 RKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRG 709

Query: 379 LFRQM 383
             + M
Sbjct: 710 FLKIM 714


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 202/648 (31%), Positives = 337/648 (52%), Gaps = 63/648 (9%)

Query: 114 MITCYTRKGELEKARELFDLLPN-KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV 172
           ++      G L  A   FD +P  + DT   NAM++ +A+      A  +  A+     +
Sbjct: 98  LVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSL 157

Query: 173 -----SWNSMLSGYTKNGEMH---------LASKFFEAMEERDVVSWNLMLDGYVELDDL 218
                S+ +++S     G+MH         L     ++     +   N ++  Y++ D  
Sbjct: 158 RPDDYSFTALISAV---GQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTP 214

Query: 219 DSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
           +++W                            +AR++ D+MP ++ + W  M+  YV+RG
Sbjct: 215 EASW----------------------------DARKVLDEMPDKDDLTWTTMVVGYVRRG 246

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA----RRL------LDQMPYKNIAA 328
            +  A  +F E+  +  V W  MI GYV+     +A    RR+      LD+  + ++ +
Sbjct: 247 DVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLS 306

Query: 329 QTAMISGYVQNKRMDEANQIF----DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
             A    +V  K +    QI     + +    +   N ++  Y++ G++  A  +F  M 
Sbjct: 307 ACANAGFFVHGKSVH--GQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMN 364

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
            KD+V+WNT+++GY     +D AV++F+ M   +N +SW  ++SG++      DALK+F 
Sbjct: 365 LKDVVSWNTILSGYIDSGCLDKAVEVFKVM-PYKNDLSWMVMVSGYVHGGLSEDALKLFN 423

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG 504
            M  E  K    T A A++AC  L AL+ GRQ+H   ++ G+      GN+L+TMYAKCG
Sbjct: 424 QMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCG 483

Query: 505 RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLS 564
            + +A L+F     +D +SWN++I+    +G+  EA++LF++MV EG+ PD ++F+ +L+
Sbjct: 484 AVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILT 543

Query: 565 ACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNA 624
           AC+H GLVD G   FE M   + I P  +HYA +IDLL R+GR+ EA +++K M  +P  
Sbjct: 544 ACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTP 603

Query: 625 GIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSM 684
            IW  +L  CR + +++ G  A ++L  + PQ    Y LLSN ++ AGRW +  +VR  M
Sbjct: 604 SIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLM 663

Query: 685 EGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
              G +K+PGCSWIEV ++IH FL GD K     E+   L+ + A++R
Sbjct: 664 RDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMR 711



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 118/453 (26%), Positives = 205/453 (45%), Gaps = 100/453 (22%)

Query: 33  EAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDK 92
           +A K+  +M  K+ +T+ +M+  Y + G VN AR +FE++  +  V WN+MI+GY+ +  
Sbjct: 219 DARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGM 278

Query: 93  VKEARELFDKMFRP----DLFSWALMITCYTRKGELEKAR----ELFDLLPNKEDTACW- 143
             +A ELF +M       D F++  +++     G     +    ++  L PN    A   
Sbjct: 279 CADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALP 338

Query: 144 --NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
             NA+V  Y+K G    AK++ D M  K++VSWN++LSGY  +G +  A + F+ M  ++
Sbjct: 339 VNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKN 398

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV---------------------------- 233
            +SW +M+ GYV     + A K F ++  ++V                            
Sbjct: 399 DLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHA 458

Query: 234 -----------VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEE 282
                       +   +L+ YA+ G + +AR +F  MP  + V+WNAMI+A  Q G   E
Sbjct: 459 HLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGRE 518

Query: 283 AARLFIEM------PERNPVSWTTMI-----------------------------DGYVR 307
           A  LF +M      P+R  +S+ T++                             D Y R
Sbjct: 519 ALELFDQMVAEGIDPDR--ISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYAR 576

Query: 308 I-------AKLDEARRLLDQMPYKNIAAQ-TAMISGYVQNKRMD----EANQIFDKIGTH 355
           +        ++ EAR L+  MP++   +   A++SG   N  M+     A+Q+F  I  H
Sbjct: 577 LIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQH 636

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
           D   + ++   Y+  GR  +A  + + M ++ +
Sbjct: 637 DGT-YILLSNTYSAAGRWVDAARVRKLMRDRGV 668



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/415 (24%), Positives = 199/415 (47%), Gaps = 31/415 (7%)

Query: 50  NSMISAYAKNGRVN---DARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP 106
           N++I+ Y K        DARK+ ++MP ++ ++W +M+ GY+    V  AR +F+++   
Sbjct: 202 NALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGK 261

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKL- 162
               W  MI+ Y + G    A ELF  + +++   D   + ++++  A  G +   K + 
Sbjct: 262 FDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVH 321

Query: 163 -------LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
                   + +P   +   N++++ Y+K G++ +A + F+ M  +DVVSWN +L GY++ 
Sbjct: 322 GQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDS 381

Query: 216 DDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMI 271
             LD A + F+ +P +N +SW+ M+SGY   G   +A +LF+QM   +V      +   I
Sbjct: 382 GCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAI 441

Query: 272 AAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
           AA  + G ++   +L   +     E +  +   ++  Y +   +++AR +   MP  +  
Sbjct: 442 AACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSV 501

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQM 383
           +  AMIS   Q+    EA ++FD++       D + +  ++      G +DE  + F  M
Sbjct: 502 SWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESM 561

Query: 384 -----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433
                ++     +  +I    +  ++ +A  + + M        W A++SG   N
Sbjct: 562 KRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTN 616



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 152/297 (51%), Gaps = 21/297 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +T   K G++  A +IF  M+ K+ V++N+++S Y  +G ++ A ++F+ MP +N +
Sbjct: 341 NALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDL 400

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLL 134
           SW  M++GY+H    ++A +LF++M     +P  +++A  I      G L+  R+L   L
Sbjct: 401 SWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHL 460

Query: 135 PN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
                +   +  NA++  YAK G  N+A+ +   MP+ + VSWN+M+S   ++G    A 
Sbjct: 461 VQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREAL 520

Query: 192 KFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSG 242
           + F+ M     + D +S+  +L        +D  + +F+ +     +S     +  ++  
Sbjct: 521 ELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDL 580

Query: 243 YARNGRMLEARRLFDQMPIRNVVA-WNAMIAAYVQRGQIEEAA----RLFIEMPERN 294
             R+GR+ EAR L   MP     + W A+++     G +E  A    +LF  +P+ +
Sbjct: 581 LGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHD 637



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 119/281 (42%), Gaps = 42/281 (14%)

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGK-RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
            +++A  A   ++ DA   F+ +   RR+TV  NA++S F +      A+ +F  +   G
Sbjct: 96  TSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSG 155

Query: 451 K-KADHSTLACALSACA--HLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC---- 503
             + D  +    +SA    H  A     Q+H   +KSG    L V N+LI +Y KC    
Sbjct: 156 SLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPE 215

Query: 504 ------------------------------GRIQNAELLFKDADPVDVISWNSLIAGYAI 533
                                         G +  A  +F++ D    + WN++I+GY  
Sbjct: 216 ASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQ 275

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV---YAIEP 590
           +G   +A +LF  MV E V  D  TF  VLSAC++ G    G  +   +  +   +  E 
Sbjct: 276 SGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEA 335

Query: 591 LVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
            +     ++ L S+ G++  A  +   M +K +   W T+L
Sbjct: 336 ALPVNNALVTLYSKGGKIVIAKRIFDTMNLK-DVVSWNTIL 375


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 231/739 (31%), Positives = 379/739 (51%), Gaps = 93/739 (12%)

Query: 59  NGRVNDARKLFEQMPQR----NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL----FS 110
           NGR++ A    E M  +    +L +++  +   +          + +K+ + DL     +
Sbjct: 44  NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVT 103

Query: 111 WALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN 170
              +I+ Y++ G+ EKA  +F L+ +  D   W+AMV+ +A            + M  + 
Sbjct: 104 LNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFAN-----------NNMGFRA 152

Query: 171 IVSWNSML-SGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP 229
           ++++  M+ +GY  N     A+    A    + VS              DS + F  K  
Sbjct: 153 LLTFVDMIENGYYPNEYCFAAAT--RACSTAEFVSVG------------DSIFGFVVKTG 198

Query: 230 --EQNVVSWVTMLSGYARN-GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
             + +V     ++  + +  G ++ A ++F++MP RN V W  MI   +Q G   EA  L
Sbjct: 199 YLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDL 258

Query: 287 FIEM------PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGY 336
           F+EM      P+R  +S   +I     +  L   ++L  Q     +         +I+ Y
Sbjct: 259 FLEMILSGYEPDRFTLS--GVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMY 316

Query: 337 VQ---NKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE-AINLFRQMVNKDIV--- 389
            +   +  M  A +IFD+I  H+V  W  MI GY Q G  DE A++LFR M+   ++   
Sbjct: 317 AKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNH 376

Query: 390 ------------------------------------TWNTMIAGYAQIRQMDDAVKIFEE 413
                                                 N++I+ YA+  ++DDA K F+ 
Sbjct: 377 FTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDI 436

Query: 414 MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQL 473
           + ++ N +S+N +I  + +N    +AL++F  +  +G  A   T A  LS  A +  +  
Sbjct: 437 LFEK-NLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGK 495

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           G QIH   IKSG   +  V N+LI+MY++CG I++A  +F+D +  +VISW S+I G+A 
Sbjct: 496 GEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAK 555

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVE 593
           +G AT+A++LF +M+ EGV P+ VT+I VLSACSHVGLV+ G K F+ M   + + P +E
Sbjct: 556 HGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRME 615

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653
           HYACM+D+L R+G L EA + +  M  K +A +W T LGACR+H N++LG+ A + + E 
Sbjct: 616 HYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQ 675

Query: 654 EPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPK 713
           EP   + Y LLSN++A   +WDEV  +R +M+     K+ GCSW+EV+N++H F  GD  
Sbjct: 676 EPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGDTS 735

Query: 714 QCRTAEICNTLKTLAAQIR 732
             + AEI + L+ L+ +I+
Sbjct: 736 HPKAAEIYDELQNLSVKIK 754



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 136/590 (23%), Positives = 259/590 (43%), Gaps = 75/590 (12%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQM-PQRNLVSWNSMIAGYLHNDKVKEARELFD 101
           Q ++VT NS+IS Y+K G+   A  +F+ M   R+L+SW++M++ + +N+    A   F 
Sbjct: 98  QLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFV 157

Query: 102 KM----FRPDLFSWALMITCYTRKGELEKARELFDLLPN----KEDTACWNAMVAGYAK- 152
            M    + P+ + +A      +    +     +F  +      + D      ++  + K 
Sbjct: 158 DMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKG 217

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY 212
            G+   A K+ + MP +N V+W  M++   + G    A   F  M           L G 
Sbjct: 218 RGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGV 277

Query: 213 VELDDLDSAWKFFQKIPEQNVVSWVTM--------LSGYAR---NGRMLEARRLFDQMPI 261
           +            Q++  Q +   +T+        ++ YA+   +G M  AR++FDQ+  
Sbjct: 278 ISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILD 337

Query: 262 RNVVAWNAMIAAYVQRGQI-EEAARLFIEM------PERNPVSWT--------------- 299
            NV +W AMI  YVQ+G   EEA  LF  M      P     S T               
Sbjct: 338 HNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQ 397

Query: 300 ------------------TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKR 341
                             ++I  Y R  ++D+AR+  D +  KN+ +   +I  Y +N  
Sbjct: 398 VFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLN 457

Query: 342 MDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI----VTWNT 393
            +EA ++F++I           +  ++ G A  G + +   +  +++   +       N 
Sbjct: 458 SEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNA 517

Query: 394 MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA 453
           +I+ Y++   ++ A ++FE+M + RN +SW ++I+GF ++ F   AL++F  M +EG + 
Sbjct: 518 LISMYSRCGNIESAFQVFEDM-EDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRP 576

Query: 454 DHSTLACALSACAHLAALQLG-RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512
           +  T    LSAC+H+  +  G +    +  + G +  +     ++ +  + G +  A + 
Sbjct: 577 NLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEA-IQ 635

Query: 513 FKDADP--VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
           F ++ P   D + W + +    ++GN  E  K   +M++E    DP  +I
Sbjct: 636 FINSMPYKADALVWRTFLGACRVHGN-LELGKHAAKMIIEQEPHDPAAYI 684



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 166/332 (50%), Gaps = 29/332 (8%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF----DKMFR 105
           NS+IS YA++GR++DARK F+ + ++NL+S+N++I  Y  N   +EA ELF    D+   
Sbjct: 415 NSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMG 474

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL 162
              F++A +++     G + K  ++   +     K + +  NA+++ Y++ GN   A ++
Sbjct: 475 ASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQV 534

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDL 218
            + M  +N++SW S+++G+ K+G    A + F  M E  V    V++  +L     +  +
Sbjct: 535 FEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLV 594

Query: 219 DSAWKFFQKI-PEQNVVS----WVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIA 272
           +  WK F+ +  E  V+     +  M+    R+G + EA +  + MP + + + W   + 
Sbjct: 595 NEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLG 654

Query: 273 AYVQRGQIE---EAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN---- 325
           A    G +E    AA++ IE    +P ++  + + Y   +K DE   +   M  KN    
Sbjct: 655 ACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKE 714

Query: 326 -----IAAQTAMISGYVQNKRMDEANQIFDKI 352
                +  +  +   YV +    +A +I+D++
Sbjct: 715 AGCSWVEVENKVHKFYVGDTSHPKAAEIYDEL 746



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 105/409 (25%), Positives = 187/409 (45%), Gaps = 49/409 (11%)

Query: 320 QMP-YKNIAAQTAMISGYVQNKRMDEANQIFDKI---GTH-DVVCWNVMIKGYAQCGRMD 374
           Q P + N    T  +   + N R+ +A    + +   G+H D+  +++ +K   +    D
Sbjct: 24  QFPTFTNPNPLTGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFD 83

Query: 375 EAINLFRQMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
               +  ++   D+    VT N++I+ Y++  Q + A  IF+ MG  R+ +SW+A++S F
Sbjct: 84  IGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCF 143

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV-ND 489
             N     AL  FV M + G   +    A A  AC+    + +G  I    +K+GY+ +D
Sbjct: 144 ANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSD 203

Query: 490 LFVGNSLITMYAKC-GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           + VG  LI M+ K  G + +A  +F+     + ++W  +I      G A EAI LF EM+
Sbjct: 204 VCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMI 263

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE---------------CMTEVYA------ 587
           + G  PD  T  GV+SAC+++ L+  G +L                 C+  +YA      
Sbjct: 264 LSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDG 323

Query: 588 --------IEPLVEH-----YACMIDLLSRAGRLDEAFEMVKGM---KIKPNAGIWGTLL 631
                    + +++H      A +   + + G  +EA ++ +GM    + PN   + + L
Sbjct: 324 SMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTL 383

Query: 632 GACRMHQNIKLGRIAVEKLSELEPQKTSCYA-LLSNMHAEAGRWDEVEK 679
            AC     +++G        +L     +C A  L +M+A +GR D+  K
Sbjct: 384 KACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARK 432



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 111/441 (25%), Positives = 202/441 (45%), Gaps = 76/441 (17%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM------PQRNLVSWNS 82
           G +  A K+F +M ++N VT+  MI+   + G   +A  LF +M      P R  +S   
Sbjct: 219 GDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVI 278

Query: 83  ---------MIAGYLHNDKVKE---------------------------ARELFDKMFRP 106
                    ++   LH+  ++                            AR++FD++   
Sbjct: 279 SACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDH 338

Query: 107 DLFSWALMITCYTRKGEL-EKARELF------DLLPNKEDTACWNAMVAGYA--KIGN-- 155
           ++FSW  MIT Y +KG   E+A +LF       ++PN    +      A  A  +IG   
Sbjct: 339 NVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQV 398

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
           +  A KL     S N V+ NS++S Y ++G +  A K F+ + E++++S+N ++D Y + 
Sbjct: 399 FTHAVKL--GFSSVNCVA-NSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKN 455

Query: 216 DDLDSAWKFFQKIPEQ----NVVSWVTMLSGYAR-----NGRMLEARRLFDQMPIRNVVA 266
            + + A + F +I +Q    +  ++ ++LSG A       G  + AR +   + +   V 
Sbjct: 456 LNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVC 515

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVR----IAKLDEARRLLDQMP 322
            NA+I+ Y + G IE A ++F +M +RN +SWT++I G+ +       L+   ++L++  
Sbjct: 516 -NALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGV 574

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGT-HDVVC----WNVMIKGYAQCGRMDEAI 377
             N+    A++S       ++E  + F  + T H V+     +  M+    + G + EAI
Sbjct: 575 RPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAI 634

Query: 378 NLFRQMVNK-DIVTWNTMIAG 397
                M  K D + W T +  
Sbjct: 635 QFINSMPYKADALVWRTFLGA 655



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 103/213 (48%), Gaps = 23/213 (10%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           N    N++IS Y++ G +  A ++FE M  RN++SW S+I G+  +    +A ELF KM 
Sbjct: 511 NQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKML 570

Query: 105 ----RPDLFSWALMITCYTRKGELEKARELFD-------LLPNKEDTACWNAMVAGYAKI 153
               RP+L ++  +++  +  G + +  + F        ++P  E  AC   MV    + 
Sbjct: 571 EEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYAC---MVDILGRS 627

Query: 154 GNYNEAKKLLDAMPSK-NIVSWNSMLSGYTKNGEMHL---ASKFFEAMEERDVVSWNLML 209
           G+ +EA + +++MP K + + W + L     +G + L   A+K     E  D  ++ L+ 
Sbjct: 628 GSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLS 687

Query: 210 DGYVELDDLDSAWKFFQKIPEQNVV-----SWV 237
           + Y      D      + + E+N++     SWV
Sbjct: 688 NLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWV 720


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 210/689 (30%), Positives = 362/689 (52%), Gaps = 66/689 (9%)

Query: 105 RPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKK 161
            P+ F  A +I   T+ G +EK  +L   +      +D     +++  Y+K GB   A+ 
Sbjct: 34  HPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGBIEVARL 93

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE----LDD 217
           + D +  K  V+W ++++GYTK G   ++ + F  M E +VV    ++   +     L+ 
Sbjct: 94  VFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEF 153

Query: 218 LDSAWKF----FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
           L+   +      ++  E +V     ++  Y +  R+   R+LFDQM ++N+++W  MI+ 
Sbjct: 154 LEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISG 213

Query: 274 YVQRGQIEEAARLFIEMPERNPVSW-------TTMIDGYVRIAKLDEARRLLDQMPYKNI 326
           Y+Q     EA +LF EM   N + W       T+++     +  L++ R++       N+
Sbjct: 214 YMQNSFDWEAMKLFGEM---NRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANL 270

Query: 327 AA----QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
            +    +  +I  Y ++  + +A ++FD +   +V+ +N MI+GY+   ++ EA+ LF +
Sbjct: 271 ESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHE 330

Query: 383 M---------------------------------------VNKDIVTWNTMIAGYAQIRQ 403
           M                                       V+ D+   + +I  Y++   
Sbjct: 331 MRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSY 390

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS 463
           + DA  +FEEM ++ + V WNA+  G+ Q+  + +ALK++  +    +K +  T A  ++
Sbjct: 391 VKDARHVFEEMNEK-DIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALIT 449

Query: 464 ACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
           A ++LA+L+ G+Q H+  +K G     FV N+L+ MYAKCG I+ A  +F  +   DV+ 
Sbjct: 450 AASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVC 509

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMT 583
           WNS+I+ +A +G A EA+ +F EM+ EG+ P+ VTF+ VLSACSH G V+ GL  F  M 
Sbjct: 510 WNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGXVEDGLNHFNSMP 569

Query: 584 EVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLG 643
             + I+P  EHYAC++ LL R+G+L EA E ++ M I+P A +W +LL ACR+  N++LG
Sbjct: 570 G-FGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELG 628

Query: 644 RIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQ 703
           + A E     +P+ +  Y LLSN+ A  G W +V+KVR  M+ S   K+PG SWIEV N+
Sbjct: 629 KYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNK 688

Query: 704 IHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           ++ F++          I + L  L   I+
Sbjct: 689 VNVFIARXTTHREADMIGSVLDILIQHIK 717



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 162/336 (48%), Gaps = 25/336 (7%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F +N  I    KS  + +A K+F  M+++N ++YN+MI  Y+   ++++A +LF +M  R
Sbjct: 275 FVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVR 334

Query: 76  ----NLVSWNSMI---AGYLHNDKVKEARELFDKM-FRPDLFSWALMITCYTRKGELEKA 127
               +L+++ S++   A     +  K+   L  K     DLF+ + +I  Y++   ++ A
Sbjct: 335 LFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDA 394

Query: 128 RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM----PSKNIVSWNSMLSGYTK 183
           R +F+ + N++D   WNAM  GY +     EA KL   +       N  ++ ++++  + 
Sbjct: 395 RHVFEEM-NEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASN 453

Query: 184 NGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTM 239
              +    +F   + +  +       N ++D Y +   ++ A K F     ++VV W +M
Sbjct: 454 LASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSM 513

Query: 240 LSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMP---- 291
           +S +A++G   EA  +F +M       N V + A+++A    G +E+    F  MP    
Sbjct: 514 ISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGXVEDGLNHFNSMPGFGI 573

Query: 292 ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
           +     +  ++    R  KL EA+  +++MP +  A
Sbjct: 574 KPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAA 609


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 208/657 (31%), Positives = 323/657 (49%), Gaps = 122/657 (18%)

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
           + D+   N +++ YV + D  SA K F ++P++N V+W  ++SGY +NG   +A  +  +
Sbjct: 32  DSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKE 91

Query: 259 M------PIR-----------------------------------NVVAWNAMIAAYVQR 277
           M      P R                                    V   N +I  Y + 
Sbjct: 92  MIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKC 151

Query: 278 GQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR--------------------- 316
           G I+ A  +F  M +++ VSW +MI G  +    ++A +                     
Sbjct: 152 GDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISAL 211

Query: 317 ---------LLDQMPYK---------NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV 358
                    LL Q  +          +++    +++ Y +  R+ E  ++F  +   D V
Sbjct: 212 SSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQV 271

Query: 359 CWNVMIKGYAQCG-RMDEAINLFRQM---------------------------------- 383
            WN +I   A  G  + EAI +F +M                                  
Sbjct: 272 SWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHAL 331

Query: 384 -----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
                V  D    N ++A Y +  +M++  +IF  M +RR+ VSWN++ISG++ NE    
Sbjct: 332 ILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCK 391

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
           A+ +  LM Q G++ D  T A  LSACA +A L+ G ++H  AI++   +D+ +G++L+ 
Sbjct: 392 AMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVIGSALVD 451

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           MY+KCGRI  A   F      ++ SWNS+I+GYA +G+   A++LF  M + G  PD +T
Sbjct: 452 MYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHIT 511

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
           F+GVLSACSH+GLVD G + F+ MTEVY + P VEHY+CM+DLL RAG LD+    +  M
Sbjct: 512 FVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKM 571

Query: 619 KIKPNAGIWGTLLGACRMHQNIK--LGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDE 676
            IKPN  IW T+LGAC      K  LGR A E L  ++PQ    Y LLSNM+A  G+W++
Sbjct: 572 PIKPNILIWRTVLGACCRGNGRKTELGRRAAEMLFNMDPQNAVNYVLLSNMYASGGKWED 631

Query: 677 VEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           + + R +M  +  +K+ GCSW+ +K+ +H F++GD        I   LK L  +IR+
Sbjct: 632 MARTRRAMREAAVKKEAGCSWVTMKDGVHVFVAGDNSHPEKGLIYAKLKELDKKIRD 688



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 143/587 (24%), Positives = 259/587 (44%), Gaps = 84/587 (14%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA----RELFDKMFR 105
           N++I+ Y + G    ARKLF++MP RN V+W  +I+GY  N   ++A    +E+  + F 
Sbjct: 39  NTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMIFEGFL 98

Query: 106 PDLFSWALMI-TC-----YTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA 159
           P+ F++   I  C     + RKG       +   L N    A  N ++  YAK G+ + A
Sbjct: 99  PNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGL-NDAKVAVGNGLINMYAKCGDIDHA 157

Query: 160 KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE----- 214
           + +   M  K+ VSWNSM++G  +N     A K + +M +  ++  N  L   +      
Sbjct: 158 RSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASL 217

Query: 215 ---LDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
              L    +  +  +   + +V    T+L+ YA   R+ E +++F  M  R+ V+WN +I
Sbjct: 218 GCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVI 277

Query: 272 AAYVQRG-QIEEAARLFIEM------PERNPVSWTTMIDGYVRIAKLDEAR-------RL 317
            A    G  + EA  +F+EM      P R      T I+    ++ L  ++        +
Sbjct: 278 GALADSGASVSEAIEVFLEMMRAGWSPNR-----VTFINLLATVSSLSTSKLSHQIHALI 332

Query: 318 LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT-HDVVCWNVMIKGYAQ----CGR 372
           L      + A + A+++ Y ++  M+   +IF ++    D V WN MI GY      C  
Sbjct: 333 LKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKA 392

Query: 373 MD---------EAINLF--------------------------RQMVNKDIVTWNTMIAG 397
           MD         + ++ F                          R  +  D+V  + ++  
Sbjct: 393 MDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVIGSALVDM 452

Query: 398 YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHST 457
           Y++  ++D A + F  M  R N  SWN++ISG+ ++    +AL++F  M   G+  DH T
Sbjct: 453 YSKCGRIDYASRFFNLMPVR-NLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHIT 511

Query: 458 LACALSACAHLAALQLGRQ-IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
               LSAC+H+  +  G +    +    G V  +   + ++ +  + G +   E  F + 
Sbjct: 512 FVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIE-NFINK 570

Query: 517 DPV--DVISWNSLIAGYAI-NGNATEAIKLFEEMVMEGVAPDPVTFI 560
            P+  +++ W +++      NG  TE  +   EM+      + V ++
Sbjct: 571 MPIKPNILIWRTVLGACCRGNGRKTELGRRAAEMLFNMDPQNAVNYV 617



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/199 (35%), Positives = 104/199 (52%), Gaps = 5/199 (2%)

Query: 377 INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
           +N+ +   + D+   NT+I  Y +I     A K+F+EM   RN V+W  LISG+ QN   
Sbjct: 24  LNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEM-PDRNGVTWACLISGYTQNGMP 82

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAH-LAALQLGRQIHHLAIKSGYVND--LFVG 493
            DA  +   M  EG   +      A+ AC   +   + GRQ+H  AI++G +ND  + VG
Sbjct: 83  EDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTG-LNDAKVAVG 141

Query: 494 NSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA 553
           N LI MYAKCG I +A  +F      D +SWNS+I G   N    +A+K +  M   G+ 
Sbjct: 142 NGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLM 201

Query: 554 PDPVTFIGVLSACSHVGLV 572
           P     I  LS+C+ +G +
Sbjct: 202 PSNFALISALSSCASLGCI 220



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 95/425 (22%), Positives = 187/425 (44%), Gaps = 45/425 (10%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           + GR      I + ++       N +I+ YAK G ++ AR +F  M  ++ VSWNSMI G
Sbjct: 119 RKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITG 178

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE-------- 138
              N   ++A + ++ M +       LM + +     L     L  +L  ++        
Sbjct: 179 LDQNKCFEDAVKSYNSMRKT-----GLMPSNFALISALSSCASLGCILLGQQTHGEGIKL 233

Query: 139 ----DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
               D +  N ++A YA+     E +K+   M  ++ VSWN+++     +G     S+  
Sbjct: 234 GLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGAS--VSEAI 291

Query: 195 EAMEERDVVSWNLMLDGYVEL----DDLDSAWKFFQ--------KIPEQNVVSWVTMLSG 242
           E   E     W+     ++ L      L ++    Q         + + N +    +L+ 
Sbjct: 292 EVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIE-NALLAC 350

Query: 243 YARNGRMLEARRLFDQMP-IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVS 297
           Y ++G M     +F +M   R+ V+WN+MI+ Y+    + +A  L   M +R    +  +
Sbjct: 351 YGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFT 410

Query: 298 WTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
           + T++     +A L+    +    +      ++   +A++  Y +  R+D A++ F+ + 
Sbjct: 411 FATVLSACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMP 470

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVTWNTMIAGYAQIRQMDDAVK 409
             ++  WN MI GYA+ G  D A+ LF +M       D +T+  +++  + I  +D+  +
Sbjct: 471 VRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFE 530

Query: 410 IFEEM 414
            F+ M
Sbjct: 531 YFKSM 535



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 141/318 (44%), Gaps = 46/318 (14%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQ-KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRN 76
           +N  +   GKSG +E   +IFS+MS+ ++ V++NSMIS Y  N  +  A  L   M QR 
Sbjct: 344 ENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRG 403

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN 136
                                       R D F++A +++       LE   E+      
Sbjct: 404 Q---------------------------RLDCFTFATVLSACATVATLECGMEVHACAIR 436

Query: 137 ---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
              + D    +A+V  Y+K G  + A +  + MP +N+ SWNSM+SGY ++G    A + 
Sbjct: 437 ACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRL 496

Query: 194 FEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPE-----QNVVSWVTMLSGYA 244
           F  M+      D +++  +L     +  +D  +++F+ + E       V  +  M+    
Sbjct: 497 FTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLG 556

Query: 245 RNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQ-RGQIEE----AARLFIEMPERNPVSW 298
           R G + +     ++MPI+ N++ W  ++ A  +  G+  E    AA +   M  +N V++
Sbjct: 557 RAGELDKIENFINKMPIKPNILIWRTVLGACCRGNGRKTELGRRAAEMLFNMDPQNAVNY 616

Query: 299 TTMIDGYVRIAKLDEARR 316
             + + Y    K ++  R
Sbjct: 617 VLLSNMYASGGKWEDMAR 634



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 109/222 (49%), Gaps = 25/222 (11%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           + + V  ++++  Y+K GR++ A + F  MP RNL SWNSMI+GY  +     A  LF +
Sbjct: 440 ESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTR 499

Query: 103 MF----RPDLFSWALMITCYTRKGELEKARELFD-------LLPNKEDTACWNAMVAGYA 151
           M      PD  ++  +++  +  G +++  E F        L+P  E  +C   MV    
Sbjct: 500 MKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSC---MVDLLG 556

Query: 152 KIGNYNEAKKLLDAMPSK-NIVSWNSMLSGYTK-NGEM----HLASKFFEAMEERDVVSW 205
           + G  ++ +  ++ MP K NI+ W ++L    + NG        A++    M+ ++ V++
Sbjct: 557 RAGELDKIENFINKMPIKPNILIWRTVLGACCRGNGRKTELGRRAAEMLFNMDPQNAVNY 616

Query: 206 NLMLDGYV---ELDDLDSAWKFFQK--IPEQNVVSWVTMLSG 242
            L+ + Y    + +D+    +  ++  + ++   SWVTM  G
Sbjct: 617 VLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWVTMKDG 658



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 96/210 (45%), Gaps = 21/210 (10%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR----NL 77
           +    K GR++ A + F+ M  +N  ++NSMIS YA++G  ++A +LF +M       + 
Sbjct: 450 VDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDH 509

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFD 132
           +++  +++   H   V E  E F  M       P +  ++ M+    R GEL+K     +
Sbjct: 510 ITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFIN 569

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNE------AKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
            +P K +   W  ++    + GN  +      A ++L  M  +N V++  + + Y   G+
Sbjct: 570 KMPIKPNILIWRTVLGACCR-GNGRKTELGRRAAEMLFNMDPQNAVNYVLLSNMYASGGK 628

Query: 187 MHLASKFFEAMEERDV-----VSWNLMLDG 211
               ++   AM E  V      SW  M DG
Sbjct: 629 WEDMARTRRAMREAAVKKEAGCSWVTMKDG 658



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%)

Query: 477 IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGN 536
            H   +K G+ +DLF+ N+LI +Y + G   +A  LF +    + ++W  LI+GY  NG 
Sbjct: 22  FHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGM 81

Query: 537 ATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
             +A  + +EM+ EG  P+   F   + AC
Sbjct: 82  PEDACGVLKEMIFEGFLPNRFAFGSAIRAC 111


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 214/640 (33%), Positives = 330/640 (51%), Gaps = 70/640 (10%)

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIV---------SWNSMLSGYTKNGEMHLASKFFEAM 197
           + G   +G Y      LDA   KNI           WN M+ G+T  G+   A  F+  M
Sbjct: 82  ILGTKLLGMYVLCGAFLDA---KNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKM 138

Query: 198 ----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRM 249
                  D  ++  ++     L+ +        KI     E +V    +++  Y+ NG +
Sbjct: 139 LGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCI 198

Query: 250 LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM--PERNPVSWT-------- 299
            +AR LFD+MP ++ V WN M+  YV+ G  + A  +F+EM   E NP S T        
Sbjct: 199 HDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVC 258

Query: 300 -------------------------------TMIDGYVRIAKLDEARRLLDQMPYKNIAA 328
                                           +ID Y +   ++ AR++ DQ    +I  
Sbjct: 259 ASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVV 318

Query: 329 QTAMISGYVQNKRMDEANQIF-----DKIGTHDVVCWNVM--IKGYAQCGRMDEAI-NLF 380
            TAMISGYV N   + A +IF     +++  + V   +V+    G A      E   ++ 
Sbjct: 319 CTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHIL 378

Query: 381 RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
           +          + ++  YA+  ++D A + F  +  + + V WN++I+   QN    +A+
Sbjct: 379 KNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDK-DAVCWNSMITSCSQNGKPEEAI 437

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500
            +F  M   G K D  +++ ALSACA+L AL  G++IH   ++  + +DLF  ++LI MY
Sbjct: 438 DLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMY 497

Query: 501 AKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
           +KCG +  A  +F   +  + +SWNS+IA Y  +G   +++ LF  M+ +G+ PD VTF+
Sbjct: 498 SKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFL 557

Query: 561 GVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKI 620
            ++SAC H G VD G+  F CMTE   I   +EHYACM+DL  RAGRL+EAF M+  M  
Sbjct: 558 AIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPF 617

Query: 621 KPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKV 680
            P+AG+WGTLLGACR+H N++L  +A   L +L+PQ +  Y LLSN+HA AG+W+ V K+
Sbjct: 618 SPDAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKI 677

Query: 681 RVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           R  M+  G QK PGCSWI+V N  H F++ D    ++++I
Sbjct: 678 RSLMKERGVQKVPGCSWIDVNNTTHMFVAADRSHPQSSQI 717



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 137/572 (23%), Positives = 239/572 (41%), Gaps = 82/572 (14%)

Query: 45  NTVTYNSMISA-----YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEAREL 99
           N + YN ++       Y   G   DA+ +F Q+       WN MI G+    +   A   
Sbjct: 75  NGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLF 134

Query: 100 FDKMFR----PDLFSWALMITCYTRKGELEKARELFD---LLPNKEDTACWNAMVAGYAK 152
           + KM      PD +++  +I        +   R + D    +  + D    ++++  Y++
Sbjct: 135 YFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSE 194

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD----------- 201
            G  ++A+ L D MPSK+ V WN ML+GY KNG+   A+  F  M   +           
Sbjct: 195 NGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACV 254

Query: 202 --VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM 259
             V +  +M++   +L  L  +       P  N  + + +   Y +   +  AR++FDQ 
Sbjct: 255 LSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDI---YFKCRDVEMARKIFDQR 311

Query: 260 PIRNVVAWNAMIAAYVQRGQIEEAARLF----IEMPERNPVSWTTMIDGYVRIAKLDEAR 315
              ++V   AMI+ YV  G    A  +F     E    N V+  +++     +A L   +
Sbjct: 312 TPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGK 371

Query: 316 RL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
            L    L      +    +A++  Y +  R+D A+Q F  I   D VCWN MI   +Q G
Sbjct: 372 ELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNG 431

Query: 372 RMDEAINLFRQM---------------------------------------VNKDIVTWN 392
           + +EAI+LFRQM                                          D+   +
Sbjct: 432 KPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAES 491

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
            +I  Y++   +D A ++F+ M + +N VSWN++I+ +  +    D+L +F  M  +G +
Sbjct: 492 ALIDMYSKCGNLDLACRVFDTM-EEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQ 550

Query: 453 ADHSTLACALSACAHLAALQLGRQIHHLAIKS---GYVNDLFVGNSLITMYAKCGRIQNA 509
            DH T    +SAC H  A Q+   IH+    +   G +  +     ++ ++ + GR+  A
Sbjct: 551 PDHVTFLAIISACGH--AGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEA 608

Query: 510 ELLFKDAD-PVDVISWNSLIAGYAINGNATEA 540
             +        D   W +L+    ++GN   A
Sbjct: 609 FGMINSMPFSPDAGVWGTLLGACRLHGNVELA 640



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 147/319 (46%), Gaps = 26/319 (8%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR----NLVSWNSMIAG 86
           VE A KIF Q +  + V   +MIS Y  NG  N+A ++F  + Q     N V+  S++  
Sbjct: 301 VEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPA 360

Query: 87  YLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTAC 142
                 +   +EL   + +       +  + ++  Y + G L+ A + F  + +K D  C
Sbjct: 361 CAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDK-DAVC 419

Query: 143 WNAMVAGYAKIGNYNEAKKLLDAM----PSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           WN+M+   ++ G   EA  L   M       + VS ++ LS       +H   +    M 
Sbjct: 420 WNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMM 479

Query: 199 ----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
                 D+ + + ++D Y +  +LD A + F  + E+N VSW ++++ Y  +GR+ ++  
Sbjct: 480 RGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLN 539

Query: 255 LFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-----SWTTMIDGY 305
           LF  M    +    V + A+I+A    GQ++E    F  M E   +      +  M+D +
Sbjct: 540 LFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLF 599

Query: 306 VRIAKLDEARRLLDQMPYK 324
            R  +L+EA  +++ MP+ 
Sbjct: 600 GRAGRLNEAFGMINSMPFS 618



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 138/289 (47%), Gaps = 24/289 (8%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM----PQRNLVSWNS 82
           K GR++ A + F  +S K+ V +NSMI++ ++NG+  +A  LF QM     + + VS ++
Sbjct: 398 KCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISA 457

Query: 83  MIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
            ++   +   +   +E+   M    FR DLF+ + +I  Y++ G L+ A  +FD +  K 
Sbjct: 458 ALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKN 517

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASKFF 194
           + + WN+++A Y   G   ++  L   M    I    V++ +++S     G++     +F
Sbjct: 518 EVS-WNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYF 576

Query: 195 EAM-EERDVVS----WNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSWVTMLSGYARNGR 248
             M EE  +++    +  M+D +     L+ A+     +P   +   W T+L     +G 
Sbjct: 577 RCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGN 636

Query: 249 M----LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           +    + +R LFD  P +N   +  +   +   GQ E   ++   M ER
Sbjct: 637 VELAEVASRNLFDLDP-QNSGYYVLLSNVHANAGQWESVLKIRSLMKER 684



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 117/273 (42%), Gaps = 69/273 (25%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNT----VTYNSMISA------------------- 55
           N  IT   ++G+ EEAI +F QM    T    V+ ++ +SA                   
Sbjct: 421 NSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMR 480

Query: 56  ----------------YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEAREL 99
                           Y+K G ++ A ++F+ M ++N VSWNS+IA Y ++ ++K++  L
Sbjct: 481 GAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNL 540

Query: 100 FDKMF----RPDLFSWALMITCYTRKGELEKARELF-------DLLPNKEDTACWNAMVA 148
           F  M     +PD  ++  +I+     G++++    F        ++   E  AC   MV 
Sbjct: 541 FHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYAC---MVD 597

Query: 149 GYAKIGNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL 207
            + + G  NEA  ++++MP S +   W ++L     +G + LA          +V S NL
Sbjct: 598 LFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELA----------EVASRNL 647

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
                 +LD  +S +         N   W ++L
Sbjct: 648 F-----DLDPQNSGYYVLLSNVHANAGQWESVL 675



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 14/178 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F ++  I    K G ++ A ++F  M +KN V++NS+I+AY  +GR+ D+  LF  M
Sbjct: 485 SDLFAESALIDMYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGM 544

Query: 73  ----PQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGE 123
                Q + V++ ++I+   H  +V E    F  M         +  +A M+  + R G 
Sbjct: 545 LGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGR 604

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
           L +A  + + +P   D   W  ++      GN   A+     + S+N+   +   SGY
Sbjct: 605 LNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAE-----VASRNLFDLDPQNSGY 657



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 49/109 (44%)

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD 517
           L   L  C   + L  GRQ H   + +G   +  +G  L+ MY  CG   +A+ +F    
Sbjct: 49  LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108

Query: 518 PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
                 WN +I G+ + G    A+  + +M+  G  PD  TF  V+ AC
Sbjct: 109 LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKAC 157


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 184/515 (35%), Positives = 292/515 (56%), Gaps = 15/515 (2%)

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ER 293
           ++L  Y R G    AR +FD+MP +NVV W+A+IA Y  RG  E A  L  +M     E 
Sbjct: 57  SLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEP 116

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMP----YKNIAAQTAMISGYVQNKRMDEANQIF 349
           N ++W  ++ G  R  +  +A   L +M     + +    +  +S     K +    Q+ 
Sbjct: 117 NVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVH 176

Query: 350 D---KIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMD 405
               K G   D      +I  Y +CGR DE + +F +  + D+ + N ++AG ++  Q+ 
Sbjct: 177 GYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVS 236

Query: 406 DAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
           +A+ +F E    G   N VSW ++++  +QN   L+A+ +F  M   G + +  T+ C L
Sbjct: 237 EALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVL 296

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
            A A++AAL  GR  H  +++ G+++D++VG++L+ MYAKCG+ ++A  +F      +V+
Sbjct: 297 PAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVV 356

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           SWN++I GYA++G+A  A++LF  M      PD VTF  VL ACS  GL + G + F  M
Sbjct: 357 SWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEM 416

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKL 642
            + + I P +EHYACM+ LL R+G+LDEA++++  M  +P++ IWG+LLG+CR++ N+ L
Sbjct: 417 QQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLL 476

Query: 643 GRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKN 702
             +A EKL +LEP     Y LLSN++A    WD V +VR  M+  G +K+ GCSWIE+KN
Sbjct: 477 AEVAAEKLFQLEPGNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKN 536

Query: 703 QIHTFLSGDPKQCRTAEICNTLKTLAAQIRNTPLA 737
           ++H  L+GD        I   L  L  ++     A
Sbjct: 537 KVHMLLAGDNSHPMMTAITEKLNQLTIEMNRLGFA 571



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 99/411 (24%), Positives = 177/411 (43%), Gaps = 57/411 (13%)

Query: 30  RVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLH 89
           R   A  + S +++   V  +S++ +Y + G    AR +F++MP++N+V W+++IAGY  
Sbjct: 37  RALHAAAVVSGLAEDPFVA-SSLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSA 95

Query: 90  NDKVKEARELFDKM----FRPDLFSWALMITCYTRKGE-LEKARELFDL-----LPNKED 139
               + A  L ++M      P++ +W  +++   R G  L+    L  +      P+   
Sbjct: 96  RGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATG 155

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE 199
            +C        + +G+  E             VS    + GY       L          
Sbjct: 156 VSC------ALSAVGDVKE-------------VSVGKQVHGYVVKAGCRL---------- 186

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM 259
            D      ++D Y +    D   + F +    +V S   +++G +RN ++ EA  LF + 
Sbjct: 187 -DACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREF 245

Query: 260 PIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKL 311
             R    NVV+W +++A  VQ G+  EA  LF  M     E N V+   ++  +  +A L
Sbjct: 246 ICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAAL 305

Query: 312 DEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367
              R      L +    ++   +A++  Y +  +   A  IFD + + +VV WN MI GY
Sbjct: 306 MHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGY 365

Query: 368 AQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           A  G    A+ LF  M       D+VT+  ++   +Q    ++  + F EM
Sbjct: 366 AMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEM 416



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 157/324 (48%), Gaps = 24/324 (7%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR----NL 77
           I   GK GR +E +++F + S  +  + N++++  ++N +V++A  LF +   R    N+
Sbjct: 195 IDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNV 254

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDL 133
           VSW S++A  + N +  EA +LF  M      P+  +   ++  +     L   R     
Sbjct: 255 VSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCF 314

Query: 134 LPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
              K    D    +A+V  YAK G    A+ + DAMPS+N+VSWN+M+ GY  +G+   A
Sbjct: 315 SLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANA 374

Query: 191 SKFFEAM----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLS 241
            + F +M    ++ D+V++  +L    +    +   ++F ++ + + +S     +  M++
Sbjct: 375 VQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMVT 434

Query: 242 GYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVS 297
              R+G++ EA  L ++MP   +   W +++ +    G +   E AA    ++   N  +
Sbjct: 435 LLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLEPGNAGN 494

Query: 298 WTTMIDGYVRIAKLDEARRLLDQM 321
           +  + + Y      D   R+ D+M
Sbjct: 495 YVLLSNIYASKKMWDGVNRVRDEM 518



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 103/432 (23%), Positives = 179/432 (41%), Gaps = 88/432 (20%)

Query: 24  QLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP----QRNLVS 79
           +LG +G    A  +F +M +KN V ++++I+ Y+  G    A  L EQM     + N+++
Sbjct: 64  RLGATG---AARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVIT 120

Query: 80  WNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITC-------------------YTR 120
           WN +++G   + +  +A     +M     F  A  ++C                   Y  
Sbjct: 121 WNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVV 180

Query: 121 K-----------------GELEKARELFDLLPNKE--DTACWNAMVAGYAKIGNYNEAKK 161
           K                 G+  +A E+  +       D A  NA+VAG ++    +EA  
Sbjct: 181 KAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALL 240

Query: 162 LLDAMPSK----NIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYV 213
           L      +    N+VSW S+++   +NG    A   F  M+    E + V+   +L  + 
Sbjct: 241 LFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFA 300

Query: 214 ELDDL---DSAWKF-FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNA 269
            +  L    SA  F  +K    +V     ++  YA+ G+   AR +FD MP RNVV+WNA
Sbjct: 301 NVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNA 360

Query: 270 MIAAYVQRGQIEEAARLFIEMP--ERNP--VSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           MI  Y   G    A +LF  M   ++ P  V++T ++    +    +E RR  ++M    
Sbjct: 361 MIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQ--- 417

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-V 384
                    G+  + RM+                +  M+    + G++DEA +L  +M  
Sbjct: 418 --------QGHGISPRMEH---------------YACMVTLLGRSGKLDEAYDLINEMPF 454

Query: 385 NKDIVTWNTMIA 396
             D   W +++ 
Sbjct: 455 EPDSCIWGSLLG 466



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 3/117 (2%)

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
           D   L  AL +C    A  L R +H  A+ SG   D FV +SL+  Y + G    A  +F
Sbjct: 19  DPHLLPSALKSCP---AQPLARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSVF 75

Query: 514 KDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
                 +V+ W++LIAGY+  G+A  A  L E+M   GV P+ +T+ G++S  +  G
Sbjct: 76  DRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSG 132


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  349 bits (896), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 184/510 (36%), Positives = 290/510 (56%), Gaps = 14/510 (2%)

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIRNVVAW----NAMIAAYVQRGQIEEAARLFIEMP 291
           + T+++   R+  +   RR+       N V      N ++  Y + G + +A  LF EM 
Sbjct: 90  YSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMG 149

Query: 292 ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK 351
            R+  SW TMI GY ++ +L++AR+L D+MP ++  +  A ISGYV + +  EA ++F  
Sbjct: 150 HRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRV 209

Query: 352 IGTHDVVCWNVMIKGYAQ-------CGRMDEAIN--LFRQMVNKDIVTWNTMIAGYAQIR 402
           +  H+    N      A        C R+ + I+  L R  +N D V W+ ++  Y +  
Sbjct: 210 MQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCG 269

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
            +D+A  IF++M K R+ VSW  +I    ++    +   +F  + Q G + +  T A  L
Sbjct: 270 SLDEARGIFDQM-KDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVL 328

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
           +ACA  AA  LG+++H   + +GY    F  ++L+ MY+KCG  + A  +F +    D++
Sbjct: 329 NACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLV 388

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           SW SLI GYA NG   EA+  FE ++  G  PD VT++GVLSAC+H GLVD GL+ F  +
Sbjct: 389 SWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSI 448

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKL 642
            E + +    +HYAC+IDLL+R+GR  EA  ++  M +KP+  +W +LLG CR+H N++L
Sbjct: 449 KEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLEL 508

Query: 643 GRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKN 702
            + A + L E+EP+  + Y  L+N++A AG W EV  VR  M+  G  K+PG SWIE+K 
Sbjct: 509 AKRAAKALYEIEPENPATYITLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSWIEIKR 568

Query: 703 QIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           Q+H FL GD    +T++I   L  L+ +I+
Sbjct: 569 QVHVFLVGDTSHPKTSDIHEFLGELSKKIK 598



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 184/403 (45%), Gaps = 45/403 (11%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  N+ +    K G + +A  +F +M  ++  ++N+MI  YAK GR+  ARKLF++MPQ
Sbjct: 122 VFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQ 181

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARE 129
           R+  SWN+ I+GY+ +++ +EA ELF  M R      + F+ +  +        L   +E
Sbjct: 182 RDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKE 241

Query: 130 LFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           +   L   E   D   W+A++  Y K G+ +EA+ + D M  +++VSW +M+    ++G 
Sbjct: 242 IHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGR 301

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI----------PEQNVVSW 236
                  F  + +  V        G +      +A    +++          P    +S 
Sbjct: 302 REEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAIS- 360

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
             ++  Y++ G    ARR+F++M   ++V+W ++I  Y Q GQ +EA   F         
Sbjct: 361 -ALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFF--------- 410

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG-TH 355
                         L ++    DQ+ Y  +   +A     + +K ++  + I +K G  H
Sbjct: 411 ------------ELLLQSGTKPDQVTY--VGVLSACTHAGLVDKGLEYFHSIKEKHGLMH 456

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAG 397
               +  +I   A+ GR  EA N+   M V  D   W +++ G
Sbjct: 457 TADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGG 499


>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
 gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 727

 Score =  349 bits (896), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 208/629 (33%), Positives = 334/629 (53%), Gaps = 63/629 (10%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM---HLASKFFEAMEER 200
           N +V  YAK G   +A  + +A+  K++VSWNS+++GY++NG +   +   + F  M  +
Sbjct: 53  NVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQ 112

Query: 201 DVVSWNLMLDGYVELDD-LDS------AWKFFQKIPEQNVVSWVTMLSG-YARNGRMLEA 252
           D++     L G  + +  L S      A     K+     +   T L G Y + G + + 
Sbjct: 113 DILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDG 172

Query: 253 RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAAR---LFIEMPERNPVS---WTTMIDGYV 306
            ++F  MP RN   W+ M++ Y  RG++EEA +   LF+   E    S   +T ++    
Sbjct: 173 LKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLA 232

Query: 307 RIAKLDEARRLLDQMPYKN-----IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWN 361
               +   R++   +  KN     +A   A+++ Y + + ++EA ++FD  G  + + W+
Sbjct: 233 ATIYVGLGRQI-HCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWS 291

Query: 362 VMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAG------------------------ 397
            M+ GY+Q G   EA+ LF +M +  I      I G                        
Sbjct: 292 AMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKL 351

Query: 398 ---------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI 442
                          YA+   + DA K F+ + + R+   W +LISG++QN  + +AL +
Sbjct: 352 GFERHLFATTALVDMYAKAGCLADARKGFDCL-QERDVALWTSLISGYVQNSDNEEALIL 410

Query: 443 FVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
           +  M   G   +  T+A  L AC+ LA L+LG+Q+H   IK G+  ++ +G++L TMY+K
Sbjct: 411 YRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSK 470

Query: 503 CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
           CG +++  L+F+     DV+SWN++I+G + NG   EA++LFEEM+ EG+ PD VTF+ +
Sbjct: 471 CGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNI 530

Query: 563 LSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKP 622
           +SACSH G V+ G   F  M++   ++P V+HYACM+DLLSRAG+L EA E ++   I  
Sbjct: 531 ISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIESANIDH 590

Query: 623 NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRV 682
              +W  LL AC+ H   +LG  A EKL  L  +++S Y  LS ++   GR  +VE+V  
Sbjct: 591 GLCLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQLSGIYTALGRMRDVERVWK 650

Query: 683 SMEGSGAQKQPGCSWIEVKNQIHTFLSGD 711
            M  +G  K+ GCSWIE+KNQ H F+ GD
Sbjct: 651 HMRANGVSKEVGCSWIELKNQYHVFVVGD 679



 Score =  145 bits (367), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 122/504 (24%), Positives = 238/504 (47%), Gaps = 77/504 (15%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDAR---KLFEQMPQRNLVSWNSM 83
           K G++ +A  IF+ +  K+ V++NS+I+ Y++NG ++ +    +LF +M  ++++     
Sbjct: 61  KCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYT 120

Query: 84  IAGY------LHNDKV-KEARELFDKMFR-PDLFSWALMITCYTRKGELEKARELFDLLP 135
           +AG       L +  V ++A  L  KM    D++    ++  Y + G +E   ++F  +P
Sbjct: 121 LAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMP 180

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------PSKNIVSWNSMLSGYTKNGEMHL 189
            + +T  W+ MV+GYA  G   EA K+ +         S +   + ++LS       + L
Sbjct: 181 ER-NTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGL 239

Query: 190 ASKFFEAMEERDVVSW----NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR 245
             +      +  ++ +    N ++  Y + + L+ A K F    ++N ++W  M++GY++
Sbjct: 240 GRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQ 299

Query: 246 NGRMLEARRLFDQMPIRNVVAWNAMIAA---------YVQRGQIEEAARLFIEMPERNPV 296
           NG  LEA +LF +M    +      I           Y++ G+   +  L +   ER+  
Sbjct: 300 NGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGF-ERHLF 358

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHD 356
           + T ++D Y +   L +AR+  D +  +++A  T++ISGYVQN   +EA  ++ ++ T  
Sbjct: 359 ATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAG 418

Query: 357 VV------------CWNV-------MIKG--------------------YAQCGRMDEAI 377
           ++            C ++        + G                    Y++CG +++  
Sbjct: 419 IIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGN 478

Query: 378 NLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALISGFLQNE 434
            +FR+  NKD+V+WN MI+G +   Q D+A+++FEEM   G   + V++  +IS      
Sbjct: 479 LVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKG 538

Query: 435 FHLDALKIFVLMTQE---GKKADH 455
           F       F +M+ +     K DH
Sbjct: 539 FVERGWFYFNMMSDQIGLDPKVDH 562



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 92/422 (21%), Positives = 193/422 (45%), Gaps = 41/422 (9%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----R 105
           N++++ Y+K   +N+A K+F+    RN ++W++M+ GY  N +  EA +LF +MF    +
Sbjct: 260 NALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIK 319

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL 162
           P  ++   ++   +    LE+ ++L   L     +       A+V  YAK G   +A+K 
Sbjct: 320 PSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKG 379

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV----SWNLMLDGYVELDDL 218
            D +  +++  W S++SGY +N +   A   +  M+   ++    +   +L     L  L
Sbjct: 380 FDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATL 439

Query: 219 DSAWK---------FFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNA 269
           +   +         F  ++P  + +S  TM   Y++ G + +   +F + P ++VV+WNA
Sbjct: 440 ELGKQVHGHTIKHGFGLEVPIGSALS--TM---YSKCGSLEDGNLVFRRTPNKDVVSWNA 494

Query: 270 MIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK- 324
           MI+     GQ +EA  LF EM     E + V++  +I        ++      + M  + 
Sbjct: 495 MISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQI 554

Query: 325 ----NIAAQTAMISGYVQNKRMDEANQIFDKIGT-HDVVCWNVMIKGYAQCGRMDEAINL 379
                +     M+    +  ++ EA +  +     H +  W +++      G+ +  +  
Sbjct: 555 GLDPKVDHYACMVDLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYA 614

Query: 380 FRQMV---NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF-LQNEF 435
             +++   +++  T+  +   Y  + +M D  ++++ M  R N VS     S   L+N++
Sbjct: 615 GEKLMALGSRESSTYVQLSGIYTALGRMRDVERVWKHM--RANGVSKEVGCSWIELKNQY 672

Query: 436 HL 437
           H+
Sbjct: 673 HV 674



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 85/199 (42%), Gaps = 47/199 (23%)

Query: 456 STLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD 515
           STL   L+  +    L  GR +H   I++G    +   N L+  YAKCG++  A  +F  
Sbjct: 15  STLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNA 74

Query: 516 ADPVDVISWNSLIAGYAINGNATEA---IKLFEEMVMEGVAPDPVTFIGVLSACSHV--- 569
               DV+SWNSLI GY+ NG  + +   ++LF EM  + + P+  T  G+  A S +   
Sbjct: 75  IICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSS 134

Query: 570 --------------------------------GLVDGGLKLFECMTE--VYAIEPLVEHY 595
                                           GLV+ GLK+F  M E   Y    +V  Y
Sbjct: 135 TVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGY 194

Query: 596 ACMIDLLSRAGRLDEAFEM 614
           A         GR++EA ++
Sbjct: 195 A-------TRGRVEEAIKV 206


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  349 bits (896), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 208/644 (32%), Positives = 341/644 (52%), Gaps = 56/644 (8%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV- 202
           N++V  YAK G + +A+ L DA+P +++VSWN++ S Y  +     A   F  M    + 
Sbjct: 49  NSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIR 108

Query: 203 ---VSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRL 255
               S + M++    L+D     K    +     + +  S   ++  YA+ G + +A  +
Sbjct: 109 PNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSV 168

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWTT------------- 300
           FD++   ++V+WNA+IA  V       A  L  EM +    P  +T              
Sbjct: 169 FDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALR 228

Query: 301 ------------------------MIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGY 336
                                   +ID Y +   +D+AR +   MP +++ A  A+ISG+
Sbjct: 229 ELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGH 288

Query: 337 VQNKRMDEANQIFDKIGTHDV----VCWNVMIKGYA--QCGRMDEAINLF--RQMVNKDI 388
            QN+  +EA  +F  + T  +       + ++K  A  Q   M   I+    +     D 
Sbjct: 289 SQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDN 348

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
              N++I  Y +   ++DA ++FEE     + V + +L++ + Q+    +AL++++ M  
Sbjct: 349 YVVNSLIDTYGKCGHVEDATRVFEE-SPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQD 407

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
            G K D    +  L+ACA L+A + G+Q+H   +K G+++D+F GNSL+ MYAKCG I++
Sbjct: 408 RGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIED 467

Query: 509 AELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
           A   F       ++SW+++I G A +G   EA++LF++M+  GV P+ +T + VL AC+H
Sbjct: 468 ASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNH 527

Query: 569 VGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWG 628
            GLV      F  M  ++ IEP+ EHYACMIDLL RAG+L+ A E+V  M  + NA +WG
Sbjct: 528 AGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWG 587

Query: 629 TLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688
            LLGA R+H+NI LG  A E L  LEP+K+  + LL+N++A  G WD+V +VR  M+   
Sbjct: 588 ALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGK 647

Query: 689 AQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            +K+PG SW+EVK++++TF+ GD    R+ EI   L  L+  ++
Sbjct: 648 VKKEPGMSWLEVKDKVYTFIVGDRSHSRSTEIYAKLDELSDLLK 691



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 143/556 (25%), Positives = 247/556 (44%), Gaps = 75/556 (13%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           NS++  YAK G   DAR LF+ +P R++VSWN++ + Y+H+D   EA  LF  M     R
Sbjct: 49  NSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIR 108

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL 162
           P+ FS + MI   T   +  + R++   L       D    NA+V  YAK+G   +A  +
Sbjct: 109 PNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSV 168

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAW 222
            D +   +IVSWN++++G   +   H A +    M +  +      L   ++      A 
Sbjct: 169 FDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKA----CAG 224

Query: 223 KFFQKIPEQNVVSWVTMLSG------------YARNGRMLEARRLFDQMPIRNVVAWNAM 270
              +++  Q   S + M  G            Y++   M +AR +F  MP R+++AWNA+
Sbjct: 225 MALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAV 284

Query: 271 IAAYVQRGQIEEAARLFIEM-PERNPVSWTTMIDGYVRIAKLD--------EARRLLDQM 321
           I+ + Q  + EEAA LF  M  E    + TT+      IA L          A  L    
Sbjct: 285 ISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGF 344

Query: 322 PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
            + N    + +I  Y +   +++A ++F++    D+V +  ++  YAQ G+ +EA+ L+ 
Sbjct: 345 EFDNYVVNS-LIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYL 403

Query: 382 QMVNK---------------------------------------DIVTWNTMIAGYAQIR 402
           +M ++                                       DI   N+++  YA+  
Sbjct: 404 EMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCG 463

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
            ++DA   F  +   R  VSW+A+I G  Q+ +  +AL++F  M + G   +H TL   L
Sbjct: 464 SIEDASCAFSRI-PVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVL 522

Query: 463 SACAHLAALQLGRQ-IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA-ELLFKDADPVD 520
            AC H   +   +   + + I  G          +I +  + G+++ A EL+ K     +
Sbjct: 523 CACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQAN 582

Query: 521 VISWNSLIAGYAINGN 536
            + W +L+    I+ N
Sbjct: 583 ALVWGALLGAARIHKN 598



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 100/192 (52%), Gaps = 8/192 (4%)

Query: 450 GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA 509
           G K +       L AC     L LG+Q+H + + +G+ +D FV NSL+ +YAKCG   +A
Sbjct: 5   GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDA 64

Query: 510 ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
             LF       V+SWN+L + Y  +    EA+ LF +MV+ G+ P+  +   +++ C+  
Sbjct: 65  RSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCT-- 122

Query: 570 GLVDG--GLKLFECMTEV-YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGI 626
           GL D   G K+   + ++ Y  +    +   ++D+ ++ G L++A  +   +  KP+   
Sbjct: 123 GLEDSVQGRKIHGYLIKLGYDSDAFSAN--ALVDMYAKVGILEDASSVFDEIA-KPDIVS 179

Query: 627 WGTLLGACRMHQ 638
           W  ++  C +H+
Sbjct: 180 WNAIIAGCVLHE 191



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 145/346 (41%), Gaps = 47/346 (13%)

Query: 4   SLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVN 63
           SLKS     +YV N    I   GK G VE+A ++F +    + V + S+++AYA++G+  
Sbjct: 339 SLKSGFEFDNYVVNS--LIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGE 396

Query: 64  DARKLFEQMPQRNLVSWNSMIAGYLHN-----DKVKEARELFDKM----FRPDLFSWALM 114
           +A +L+ +M  R  +  +S +   L N        ++ +++   +    F  D+F+   +
Sbjct: 397 EALRLYLEMQDRG-IKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSL 455

Query: 115 ITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA----KKLLDAMPSKN 170
           +  Y + G +E A   F  +P +     W+AM+ G A+ G   EA    K++L      N
Sbjct: 456 VNMYAKCGSIEDASCAFSRIPVR-GIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPN 514

Query: 171 IVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPE 230
            ++  S+L      G +  A  +F +M+                          F   P 
Sbjct: 515 HITLVSVLCACNHAGLVAEAKHYFNSMK------------------------ILFGIEPM 550

Query: 231 QNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARL 286
           Q    +  M+    R G++  A  L ++MP + N + W A++ A      I   E+AA +
Sbjct: 551 QE--HYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEM 608

Query: 287 FIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAM 332
            + +      +   + + Y  +   D+  R+   M    +  +  M
Sbjct: 609 LLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGM 654


>gi|356519224|ref|XP_003528273.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Glycine max]
          Length = 805

 Score =  349 bits (896), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 222/722 (30%), Positives = 362/722 (50%), Gaps = 37/722 (5%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           N    + ++  YAK G    A +LF   P  N+ SW ++I  +      +EA   + KM 
Sbjct: 87  NDFVISKLVILYAKCGASEPATRLFRDSPSPNVFSWAAIIGLHTRTGFCEEALFGYIKMQ 146

Query: 104 ---FRPDLFSW-----ALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGN 155
                PD F       A  +  + R G+   A  +   +  KE      ++V  Y K G 
Sbjct: 147 QDGLPPDNFVLPNVLKACGVLKWVRFGKGVHAF-VVKTIGLKECVYVATSLVDMYGKCGA 205

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
             +A K+ D M  +N V+WNSM+  Y +NG    A + F  M  + V    + L G+   
Sbjct: 206 VEDAGKVFDEMSERNDVTWNSMVVTYAQNGMNQEAIRVFREMRLQGVEVTLVALSGFFTA 265

Query: 216 DDLDSAWKFFQKIPEQNVVSWV--------TMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
                A    ++     VV  +        ++++ Y + G + EA  +F  M +++VV W
Sbjct: 266 CANSEAVGEGRQGHGLAVVGGLELDNVLGSSIMNFYFKVGLIEEAEVVFRNMAVKDVVTW 325

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK--- 324
           N ++A Y Q G +E+A  +   M E         +   + +A   + R L+  M      
Sbjct: 326 NLVVAGYAQFGMVEKALEMCCVMREEGLRFDCVTLSALLAVAA--DTRDLVLGMKAHAYC 383

Query: 325 -------NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAI 377
                  ++   + +I  Y +  RMD A ++F  +   D+V WN M+   A+ G   EA+
Sbjct: 384 VKNDFEGDVVVSSGIIDMYAKCGRMDCARRVFSCVRKKDIVLWNTMLAACAEQGLSGEAL 443

Query: 378 NLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALISGF 430
            LF QM    V  ++V+WN++I G+ +  Q+ +A  +F EM   G   N ++W  ++SG 
Sbjct: 444 KLFFQMQLESVPPNVVSWNSLIFGFFKNGQVAEARNMFAEMCSSGVMPNLITWTTMMSGL 503

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
           +QN F   A+ +F  M   G + +  ++  ALS C  +A L+ GR IH   ++      +
Sbjct: 504 VQNGFGSGAMMVFREMQDVGIRPNSMSITSALSGCTSMALLKHGRAIHGYVMRRDLSQSI 563

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME 550
            +  S++ MYAKCG +  A+ +FK     ++  +N++I+ YA +G A EA+ LF++M  E
Sbjct: 564 HIITSIMDMYAKCGSLDGAKCVFKMCSTKELYVYNAMISAYASHGQAREALVLFKQMEKE 623

Query: 551 GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDE 610
           G+ PD +T   VLSACSH GL+  G+K+F+ M     ++P  EHY C++ LL+  G+LDE
Sbjct: 624 GIVPDHITLTSVLSACSHGGLMKEGIKVFKYMVSELQMKPSEEHYGCLVKLLANDGQLDE 683

Query: 611 AFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAE 670
           A   +  M   P+A I G+LL AC  + +I+L     + L +L+P  +  Y  LSN++A 
Sbjct: 684 ALRTILTMPSHPDAHILGSLLTACGQNNDIELADYIAKWLLKLDPDNSGNYVALSNVYAA 743

Query: 671 AGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQ 730
            G+WD+V  +R  M+  G +K PGCSWIEV  ++H F++ D    +T EI  TL  L  +
Sbjct: 744 VGKWDKVSNLRGLMKEKGLRKIPGCSWIEVGQELHVFIASDRSHPKTEEIYVTLDLLGFE 803

Query: 731 IR 732
           + 
Sbjct: 804 MH 805



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 136/506 (26%), Positives = 236/506 (46%), Gaps = 68/506 (13%)

Query: 5   LKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND 64
           +K+IG K   V+     +   GK G VE+A K+F +MS++N VT+NSM+  YA+NG   +
Sbjct: 181 VKTIGLK-ECVYVATSLVDMYGKCGAVEDAGKVFDEMSERNDVTWNSMVVTYAQNGMNQE 239

Query: 65  ARKLFEQM----PQRNLVSWNSMIAGYLHNDKVKEARE-----LFDKMFRPDLFSWALMI 115
           A ++F +M     +  LV+ +       +++ V E R+     +   +   ++   ++M 
Sbjct: 240 AIRVFREMRLQGVEVTLVALSGFFTACANSEAVGEGRQGHGLAVVGGLELDNVLGSSIM- 298

Query: 116 TCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI---- 171
             Y + G +E+A  +F  +  K D   WN +VAGYA+ G   +A ++   M  + +    
Sbjct: 299 NFYFKVGLIEEAEVVFRNMAVK-DVVTWNLVVAGYAQFGMVEKALEMCCVMREEGLRFDC 357

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQK 227
           V+ +++L+      ++ L  K          E DVV  + ++D Y +   +D A + F  
Sbjct: 358 VTLSALLAVAADTRDLVLGMKAHAYCVKNDFEGDVVVSSGIIDMYAKCGRMDCARRVFSC 417

Query: 228 IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEA 283
           + ++++V W TML+  A  G   EA +LF QM +     NVV+WN++I  + + GQ+ EA
Sbjct: 418 VRKKDIVLWNTMLAACAEQGLSGEALKLFFQMQLESVPPNVVSWNSLIFGFFKNGQVAEA 477

Query: 284 ARLFIEMPER----NPVSWTTMIDGYVRIAKLDEA----RRLLDQMPYKNIAAQTAMISG 335
             +F EM       N ++WTTM+ G V+      A    R + D     N  + T+ +SG
Sbjct: 478 RNMFAEMCSSGVMPNLITWTTMMSGLVQNGFGSGAMMVFREMQDVGIRPNSMSITSALSG 537

Query: 336 YVQNKRMDEANQIFDKIGTHD----VVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTW 391
                 +     I   +   D    +     ++  YA+CG +D A  +F+    K++  +
Sbjct: 538 CTSMALLKHGRAIHGYVMRRDLSQSIHIITSIMDMYAKCGSLDGAKCVFKMCSTKELYVY 597

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
           N MI+ YA   Q  +A+ +F++M K                                EG 
Sbjct: 598 NAMISAYASHGQAREALVLFKQMEK--------------------------------EGI 625

Query: 452 KADHSTLACALSACAHLAALQLGRQI 477
             DH TL   LSAC+H   ++ G ++
Sbjct: 626 VPDHITLTSVLSACSHGGLMKEGIKV 651


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 197/556 (35%), Positives = 312/556 (56%), Gaps = 16/556 (2%)

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
           H  S  F+     DV   N +++ Y     + SA + F++ P  ++VSW T+L+GY + G
Sbjct: 130 HAVSSGFDG----DVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAG 185

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF--IEMPERNPVSWTTMIDGY 305
            + EA R+F+ MP RN +A N+MIA + ++G +E+A R+F  +   ER+ VSW+ M+  Y
Sbjct: 186 EVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCY 245

Query: 306 VRIAKLDEARRLLDQMPYKNIAAQTAMI------SGYVQNKRMDE-ANQIFDKIGTHDVV 358
            +    +EA  L  +M    +A    ++         V N  M    + +  K+G  D V
Sbjct: 246 EQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYV 305

Query: 359 CW-NVMIKGYAQCGRMDEAINLFRQMVNK-DIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
              N +I  Y+ CG + +A  +F       D+++WN+MI+GY +   + DA  +F  M  
Sbjct: 306 SLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSM-P 364

Query: 417 RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ 476
            ++ VSW+A+ISG+ Q+E   +AL +F  M   G + D + L  A+SAC HLA L LG+ 
Sbjct: 365 EKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKW 424

Query: 477 IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGN 536
           IH    ++    ++ +  +LI MY KCG ++NA  +F   +   V +WN++I G A+NG+
Sbjct: 425 IHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGS 484

Query: 537 ATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYA 596
             +++ +F +M   G  P+ +TF+GVL AC H+GLV+ G   F  M   + IE  ++HY 
Sbjct: 485 VEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYG 544

Query: 597 CMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQ 656
           CM+DLL RAG L EA E++  M + P+   WG LLGACR H++ ++G     KL +L+P 
Sbjct: 545 CMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQPD 604

Query: 657 KTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCR 716
               + LLSN++A  G W  V ++R  M   G  K PGCS IE    +H FL+GD    +
Sbjct: 605 HDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDKTHPQ 664

Query: 717 TAEICNTLKTLAAQIR 732
             +I + L  +AA+++
Sbjct: 665 INDIEHMLDVVAAKLK 680



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 128/569 (22%), Positives = 240/569 (42%), Gaps = 116/569 (20%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKV 93
           +++IF+ +   NT T+N+++ A+             +  P + L+ +   +A +   D  
Sbjct: 57  SLRIFNHLRNPNTFTWNTIMRAHL----------YLQNSPHQALLHYKLFLASHAKPDSY 106

Query: 94  K---------------EAREL----FDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
                           E R+L        F  D++    ++  Y   G +  AR +F+  
Sbjct: 107 TYPILLQCCAARVSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEES 166

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P   D   WN ++AGY + G   EA+++ + MP +N ++ NSM++ + + G +  A + F
Sbjct: 167 P-VLDLVSWNTLLAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIF 225

Query: 195 EAM--EERDVVSWNLMLDGYVELDDLDSAWKFF----------------------QKIPE 230
             +   ERD+VSW+ M+  Y + +  + A   F                       ++  
Sbjct: 226 NGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLN 285

Query: 231 QNVVSWV-----------------TMLSGYARNGRMLEARRLFDQ-MPIRNVVAWNAMIA 272
             +  WV                  ++  Y+  G +++ARR+FD    + ++++WN+MI+
Sbjct: 286 VEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMIS 345

Query: 273 AYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI----AA 328
            Y++ G I++A  LF  MPE++ VSW+ MI GY +     EA  L  +M    +     A
Sbjct: 346 GYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETA 405

Query: 329 QTAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
             + IS       +D    I   I  +    +V+    +I  Y +CG ++ A+ +F  M 
Sbjct: 406 LVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAME 465

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
            K + TWN +I G A    ++ ++ +F +M K           +G + NE          
Sbjct: 466 EKGVSTWNAVILGLAMNGSVEQSLNMFADMKK-----------TGTVPNEI--------- 505

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN-DLFVGNSLITMYAKC 503
                       T    L AC H+  +  GR   +  I    +  ++     ++ +  + 
Sbjct: 506 ------------TFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRA 553

Query: 504 GRIQNAELLFKDADPV--DVISWNSLIAG 530
           G ++ AE L  D+ P+  DV +W +L+  
Sbjct: 554 GLLKEAEELI-DSMPMAPDVATWGALLGA 581



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 109/463 (23%), Positives = 205/463 (44%), Gaps = 69/463 (14%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V+ +N  +      G V  A ++F +    + V++N++++ Y + G V +A ++FE MP+
Sbjct: 140 VYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGMPE 199

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFD--KMFRPDLFSWALMITCYTRKGELEKARELFD 132
           RN ++ NSMIA +     V++AR +F+  +    D+ SW+ M++CY +    E+A  LF 
Sbjct: 200 RNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFV 259

Query: 133 LLPNKED-----------TAC----------W-----------------NAMVAGYAKIG 154
            +                +AC          W                 NA++  Y+  G
Sbjct: 260 EMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCG 319

Query: 155 NYNEAKKLL-DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV 213
              +A+++  D     +++SWNSM+SGY + G +  A   F +M E+DVVSW+ M+ GY 
Sbjct: 320 EIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYA 379

Query: 214 ELDDLDSAWKFFQKI-------PEQNVVSWVTMLSGYAR--NGRMLEARRLFDQMPIRNV 264
           + +    A   FQ++        E  +VS ++  +  A    G+ + A    +++ + NV
Sbjct: 380 QHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQV-NV 438

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
           +    +I  Y++ G +E A  +F  M E+   +W  +I G      ++++  +   M   
Sbjct: 439 ILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKT 498

Query: 325 NIAAQTAMISGYVQNKR----MDEANQIFDK-IGTH----DVVCWNVMIKGYAQCGRMDE 375
                     G +   R    +++    F+  I  H    ++  +  M+    + G + E
Sbjct: 499 GTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKE 558

Query: 376 AINLFRQM-VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
           A  L   M +  D+ TW  ++    + R          EMG+R
Sbjct: 559 AEELIDSMPMAPDVATWGALLGACRKHRD--------NEMGER 593



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 136/300 (45%), Gaps = 18/300 (6%)

Query: 14  YVFNQNKKITQLGKSGRVEEAIKIFSQMSQK-NTVTYNSMISAYAKNGRVNDARKLFEQM 72
           YV  +N  I      G + +A +IF    +  + +++NSMIS Y + G + DA  LF  M
Sbjct: 304 YVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSM 363

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKAR 128
           P++++VSW++MI+GY  ++   EA  LF +M     RPD  +    I+  T    L+  +
Sbjct: 364 PEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGK 423

Query: 129 ELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
            +   +   +   +      ++  Y K G    A ++  AM  K + +WN+++ G   NG
Sbjct: 424 WIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNG 483

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYV----ELDDLDSAWKFFQKI-----PEQNVVSW 236
            +  +   F  M++   V   +   G +     +  ++    +F  +      E N+  +
Sbjct: 484 SVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHY 543

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
             M+    R G + EA  L D MP+  +V  W A++ A  +    E   RL  ++ +  P
Sbjct: 544 GCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQP 603



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 98/182 (53%), Gaps = 17/182 (9%)

Query: 380 FRQMVNKDIVTWNTMIAGYAQIRQMD------------DAVKIFEEMGKRRNTVSWNALI 427
           F+Q++++ I+T   +   YA  R ++             +++IF  + +  NT +WN ++
Sbjct: 19  FKQLLSQTILT-GLITDPYAASRLINFSSHSTTLVPFHYSLRIFNHL-RNPNTFTWNTIM 76

Query: 428 SG--FLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485
               +LQN  H  AL  + L      K D  T    L  CA   +   GRQ+H  A+ SG
Sbjct: 77  RAHLYLQNSPH-QALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFEGRQLHAHAVSSG 135

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
           +  D++V N+L+ +YA CG + +A  +F+++  +D++SWN+L+AGY   G   EA ++FE
Sbjct: 136 FDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFE 195

Query: 546 EM 547
            M
Sbjct: 196 GM 197


>gi|356495733|ref|XP_003516728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Glycine max]
          Length = 770

 Score =  349 bits (895), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 214/721 (29%), Positives = 369/721 (51%), Gaps = 38/721 (5%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S  F  N  I    K   +  A  +F  +  KN  ++N++++AY K   +  A +LF QM
Sbjct: 39  SDTFLSNHFIELYSKCDHIASACHVFDNIPHKNIFSWNAILAAYCKARNLQYACRLFLQM 98

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAR 128
           PQRN VS N++I+  +     ++A + +D +      P   ++A + +      + +  R
Sbjct: 99  PQRNTVSLNTLISTMVRCGYERQALDTYDSVMLDGVIPSHITFATVFSACGSLLDADCGR 158

Query: 129 ELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
               ++     + +    NA++  YAK G   +A ++   +P  N V++ +M+ G  +  
Sbjct: 159 RTHGVVIKVGLESNIYVVNALLCMYAKCGLNADALRVFRDIPEPNEVTFTTMMGGLAQTN 218

Query: 186 EMHLASKFFEAMEER----DVVSWNLMLD---------GYVELDDLDSAWKFFQKIP--- 229
           ++  A++ F  M  +    D VS + ML          G       ++  K    +    
Sbjct: 219 QIKEAAELFRLMLRKGIRVDSVSLSSMLGVCAKGERDVGPCHGISTNAQGKQMHTLSVKL 278

Query: 230 --EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF 287
             E+++    ++L  YA+ G M  A ++F  +   +VV+WN MIA Y  R   E+AA   
Sbjct: 279 GFERDLHLCNSLLDMYAKIGDMDSAEKVFVNLNRHSVVSWNIMIAGYGNRCNSEKAAEYL 338

Query: 288 IEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMD 343
             M     E + V++  M+   V+   +   R++ D MP  ++ +  A++SGY QN    
Sbjct: 339 QRMQSDGYEPDDVTYINMLTACVKSGDVRTGRQIFDCMPCPSLTSWNAILSGYNQNADHR 398

Query: 344 EANQIFDKIGTH----DVVCWNVMIKGYAQCGRMD--EAINLFRQMVN--KDIVTWNTMI 395
           EA ++F K+       D     V++   A+ G ++  + ++   Q      D+   +++I
Sbjct: 399 EAVELFRKMQFQCQHPDRTTLAVILSSCAELGFLEAGKEVHAASQKFGFYDDVYVASSLI 458

Query: 396 AGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADH 455
             Y++  +M+ +  +F ++    + V WN++++GF  N    DAL  F  M Q G     
Sbjct: 459 NVYSKCGKMELSKHVFSKL-PELDVVCWNSMLAGFSINSLGQDALSFFKKMRQLGFFPSE 517

Query: 456 STLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD 515
            + A  +S+CA L++L  G+Q H   +K G+++D+FVG+SLI MY KCG +  A   F  
Sbjct: 518 FSFATVVSSCAKLSSLFQGQQFHAQIVKDGFLDDIFVGSSLIEMYCKCGDVNGARCFFDV 577

Query: 516 ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
               + ++WN +I GYA NG+   A+ L+ +M+  G  PD +T++ VL+ACSH  LVD G
Sbjct: 578 MPGRNTVTWNEMIHGYAQNGDGHNALCLYNDMISSGEKPDDITYVAVLTACSHSALVDEG 637

Query: 576 LKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACR 635
           L++F  M + Y + P V HY C+ID LSRAGR +E   ++  M  K +A +W  +L +CR
Sbjct: 638 LEIFNAMLQKYGVVPKVAHYTCIIDCLSRAGRFNEVEVILDAMPCKDDAVVWEVVLSSCR 697

Query: 636 MHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGC 695
           +H N+ L + A E+L  L+PQ ++ Y LL+NM++  G+WD+   VR  M  +  +K PG 
Sbjct: 698 IHANLSLAKRAAEELYRLDPQNSASYVLLANMYSSLGKWDDAHVVRDLMSHNQVRKDPGY 757

Query: 696 S 696
           S
Sbjct: 758 S 758



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 87/207 (42%), Gaps = 37/207 (17%)

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
           AHL+    G+ +H    +    +D F+ N  I +Y+KC  I +A  +F +    ++ SWN
Sbjct: 21  AHLS----GKVVHARLFRLALFSDTFLSNHFIELYSKCDHIASACHVFDNIPHKNIFSWN 76

Query: 526 SLIAGYAINGNATEAIKLFEEM-------------------------------VMEGVAP 554
           +++A Y    N   A +LF +M                               +++GV P
Sbjct: 77  AILAAYCKARNLQYACRLFLQMPQRNTVSLNTLISTMVRCGYERQALDTYDSVMLDGVIP 136

Query: 555 DPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEM 614
             +TF  V SAC  +   D G +    + +V  +E  +     ++ + ++ G   +A  +
Sbjct: 137 SHITFATVFSACGSLLDADCGRRTHGVVIKV-GLESNIYVVNALLCMYAKCGLNADALRV 195

Query: 615 VKGMKIKPNAGIWGTLLGACRMHQNIK 641
            + +  +PN   + T++G       IK
Sbjct: 196 FRDIP-EPNEVTFTTMMGGLAQTNQIK 221


>gi|302787216|ref|XP_002975378.1| hypothetical protein SELMODRAFT_31438 [Selaginella moellendorffii]
 gi|300156952|gb|EFJ23579.1| hypothetical protein SELMODRAFT_31438 [Selaginella moellendorffii]
          Length = 561

 Score =  349 bits (895), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 183/550 (33%), Positives = 312/550 (56%), Gaps = 17/550 (3%)

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSML-SGYTKNGEMHLASKF 193
           P + DT   N ++  Y++ G  +EAK + D +P +N  S+N ML     +N ++  A++ 
Sbjct: 12  PYRHDTFLSNLLIRVYSECGKLDEAKLVFDGIPRQNDYSYNFMLMQSSARNNDLAQATEI 71

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEAR 253
           F  M ERDV+SW +M+  + +  DL+ AW  F ++PE+++V W  +L G+   G+  EA+
Sbjct: 72  FGRMPERDVLSWTVMVLAFAQNGDLEVAWSSFLEMPERDIVPWTGILQGFVDTGQPDEAK 131

Query: 254 RLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDE 313
            +FD+MP ++VV W+AM+ A  +  ++++A  LF   P+ N VSWT M+ GY    ++ E
Sbjct: 132 SVFDRMPQQDVVCWSAMLQAQARNDRVDQAKLLFDRFPQLNVVSWTAMLGGYAHSGRIRE 191

Query: 314 ARRLLDQMPY--------KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIK 365
           A  L  +MP         +++     M+S   + KR+ +A  + +K+     V W +++ 
Sbjct: 192 AELLFRKMPQHDAISRPERDMGDYITMLSALAETKRLKDARALLEKMPEQSPVAWTIVLA 251

Query: 366 GYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
            YAQ G M EA  L+  M  K++V    M+ GYAQ   + D  ++F E    R++++WN+
Sbjct: 252 SYAQAGHMYEARELYVAMPAKNVVASTAMVQGYAQGGHIRDCEELFFETMAERDSMAWNS 311

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA-ALQLG--RQIHHLA- 481
           L+  + QN    +A  +F  + Q     D S++   +S C+ ++    LG   Q   +A 
Sbjct: 312 LLGAYSQNGLASNAEAVFSRIPQYDSMEDASSVLERMSHCSLISWNTMLGGFAQSKMVAE 371

Query: 482 ----IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNA 537
                ++  V D+F  N+++  +A  G + +A   F+     ++ SW  LIAGYA+ G+ 
Sbjct: 372 ARALFQTMPVQDIFSWNAMVAAHAHVGHLADAMRTFEAMASKNLFSWTILIAGYALAGHQ 431

Query: 538 TEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYAC 597
           + AI LF+ M +EG  PD + F+ V+ ACSH+GLV+  L+ F  M   Y I+P   H+ C
Sbjct: 432 SSAISLFQSMQLEGERPDGIVFMCVIHACSHLGLVEEALQNFYQMRADYQIQPDENHFYC 491

Query: 598 MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK 657
           M+DL +RAG+  +A E+++ M   P++  W TLLG+C++ ++I+LG+ A  + S + P+K
Sbjct: 492 MVDLFARAGQQQDARELIESMPFVPDSLAWQTLLGSCKVSRDIQLGKHAANQASVISPEK 551

Query: 658 TSCYALLSNM 667
            + Y LLSN+
Sbjct: 552 AATYVLLSNI 561



 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 154/530 (29%), Positives = 273/530 (51%), Gaps = 37/530 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMI-SAYAKNGRVNDARKLFEQMP 73
            F  N  I    + G+++EA  +F  + ++N  +YN M+  + A+N  +  A ++F +MP
Sbjct: 17  TFLSNLLIRVYSECGKLDEAKLVFDGIPRQNDYSYNFMLMQSSARNNDLAQATEIFGRMP 76

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDL 133
           +R+++SW  M+  +  N  ++ A   F +M   D+  W  ++  +   G+ ++A+ +FD 
Sbjct: 77  ERDVLSWTVMVLAFAQNGDLEVAWSSFLEMPERDIVPWTGILQGFVDTGQPDEAKSVFDR 136

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
           +P ++D  CW+AM+   A+    ++AK L D  P  N+VSW +ML GY  +G +  A   
Sbjct: 137 MP-QQDVVCWSAMLQAQARNDRVDQAKLLFDRFPQLNVVSWTAMLGGYAHSGRIREAELL 195

Query: 194 FEAMEERDVVS--------WNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR 245
           F  M + D +S        +  ML    E   L  A    +K+PEQ+ V+W  +L+ YA+
Sbjct: 196 FRKMPQHDAISRPERDMGDYITMLSALAETKRLKDARALLEKMPEQSPVAWTIVLASYAQ 255

Query: 246 NGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIE-MPERNPVSWTTMIDG 304
            G M EAR L+  MP +NVVA  AM+  Y Q G I +   LF E M ER+ ++W +++  
Sbjct: 256 AGHMYEARELYVAMPAKNVVASTAMVQGYAQGGHIRDCEELFFETMAERDSMAWNSLLGA 315

Query: 305 YVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMI 364
           Y +      A  +  ++P               Q   M++A+ + +++    ++ WN M+
Sbjct: 316 YSQNGLASNAEAVFSRIP---------------QYDSMEDASSVLERMSHCSLISWNTML 360

Query: 365 KGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
            G+AQ   + EA  LF+ M  +DI +WN M+A +A +  + DA++ FE M   +N  SW 
Sbjct: 361 GGFAQSKMVAEARALFQTMPVQDIFSWNAMVAAHAHVGHLADAMRTFEAMAS-KNLFSWT 419

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
            LI+G+        A+ +F  M  EG++ D     C + AC+HL  ++   Q +   +++
Sbjct: 420 ILIAGYALAGHQSSAISLFQSMQLEGERPDGIVFMCVIHACSHLGLVEEALQ-NFYQMRA 478

Query: 485 GYV-----NDLFVGNSLITMYAKCGRIQNAELLFKDADPV-DVISWNSLI 528
            Y      N  +    ++ ++A+ G+ Q+A  L +    V D ++W +L+
Sbjct: 479 DYQIQPDENHFYC---MVDLFARAGQQQDARELIESMPFVPDSLAWQTLL 525



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 122/312 (39%), Gaps = 81/312 (25%)

Query: 346 NQIFDKIGTHDVVCWNVMIKGYAQCGRMDE------------------------------ 375
           NQ+ +    HD    N++I+ Y++CG++DE                              
Sbjct: 6   NQMLESPYRHDTFLSNLLIRVYSECGKLDEAKLVFDGIPRQNDYSYNFMLMQSSARNNDL 65

Query: 376 --AINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433
             A  +F +M  +D+++W  M+  +AQ   ++ A   F EM + R+ V W  ++ GF+  
Sbjct: 66  AQATEIFGRMPERDVLSWTVMVLAFAQNGDLEVAWSSFLEMPE-RDIVPWTGILQGFVDT 124

Query: 434 EFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG 493
               +A  +F  M Q+                                       D+   
Sbjct: 125 GQPDEAKSVFDRMPQQ---------------------------------------DVVCW 145

Query: 494 NSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA 553
           ++++   A+  R+  A+LLF     ++V+SW +++ GYA +G   EA  LF +M      
Sbjct: 146 SAMLQAQARNDRVDQAKLLFDRFPQLNVVSWTAMLGGYAHSGRIREAELLFRKMPQHDAI 205

Query: 554 PDPV----TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLD 609
             P      +I +LSA +    +     L E M E   +      +  ++   ++AG + 
Sbjct: 206 SRPERDMGDYITMLSALAETKRLKDARALLEKMPEQSPVA-----WTIVLASYAQAGHMY 260

Query: 610 EAFEMVKGMKIK 621
           EA E+   M  K
Sbjct: 261 EARELYVAMPAK 272



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/278 (20%), Positives = 110/278 (39%), Gaps = 76/278 (27%)

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP--------------- 518
            +++H+  ++S Y +D F+ N LI +Y++CG++  A+L+F D  P               
Sbjct: 1   AKRVHNQMLESPYRHDTFLSNLLIRVYSECGKLDEAKLVF-DGIPRQNDYSYNFMLMQSS 59

Query: 519 ------------------VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP------ 554
                              DV+SW  ++  +A NG+   A   F EM    + P      
Sbjct: 60  ARNNDLAQATEIFGRMPERDVLSWTVMVLAFAQNGDLEVAWSSFLEMPERDIVPWTGILQ 119

Query: 555 ---------------------DPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVE 593
                                D V +  +L A +    VD    LF+   ++  +     
Sbjct: 120 GFVDTGQPDEAKSVFDRMPQQDVVCWSAMLQAQARNDRVDQAKLLFDRFPQLNVVS---- 175

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGM-------KIKPNAGIWGTLLGACRMHQNIKLGRIA 646
            +  M+   + +GR+ EA  + + M       + + + G + T+L A    + +K  R  
Sbjct: 176 -WTAMLGGYAHSGRIREAELLFRKMPQHDAISRPERDMGDYITMLSALAETKRLKDARAL 234

Query: 647 VEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSM 684
           +EK+ E  P     + ++   +A+AG   E  ++ V+M
Sbjct: 235 LEKMPEQSP---VAWTIVLASYAQAGHMYEARELYVAM 269


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  349 bits (895), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 231/746 (30%), Positives = 365/746 (48%), Gaps = 70/746 (9%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPD 107
           ++  Y K G ++DA K+F++MP R   +WN+MI  Y+ N +   A  L+  M        
Sbjct: 122 LVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLG 181

Query: 108 LFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLD 164
           L S+  ++    +  ++    EL  LL            NA+V+ YAK  + + A++L D
Sbjct: 182 LSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFD 241

Query: 165 AMPSK-NIVSWNSMLSGYTKNG----------EMHLASKFFEAMEERDVVSWNLMLDG-- 211
               K + V WNS+LS Y+ +G          EMH+      A     +VS     DG  
Sbjct: 242 GFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGP---APNSYTIVSALTACDGFS 298

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
           Y +L     A           +     +++ Y R G+M +A R+  QM   +VV WN++I
Sbjct: 299 YAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLI 358

Query: 272 AAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARRL----LDQMPY 323
             YVQ    +EA   F +M     + + VS T++I    R++ L     L    +     
Sbjct: 359 KGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWD 418

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
            N+     +I  Y +        + F ++   D++ W  +I GYAQ     EA+ LFR +
Sbjct: 419 SNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDV 478

Query: 384 VNK--------------------------------------DIVTWNTMIAGYAQIRQMD 405
             K                                      D V  N ++  Y + R M 
Sbjct: 479 AKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTVIQNELVDVYGKCRNMG 538

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
            A ++FE + K ++ VSW ++IS    N    +A+++F  M + G  AD   L C LSA 
Sbjct: 539 YATRVFESI-KGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAA 597

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
           A L+AL  GR+IH   ++ G+  +  +  +++ MYA CG +Q+A+ +F   +   ++ + 
Sbjct: 598 ASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYT 657

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
           S+I  Y ++G    A++LF++M  E V+PD ++F+ +L ACSH GL+D G    + M   
Sbjct: 658 SMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHE 717

Query: 586 YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI 645
           Y +EP  EHY C++D+L RA  + EAFE VK MK +P A +W  LL ACR H   ++G I
Sbjct: 718 YELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEI 777

Query: 646 AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705
           A ++L ELEP+      L+SN+ AE GRW++VEKVR  M+ SG +K PGCSWIE+  ++H
Sbjct: 778 AAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVH 837

Query: 706 TFLSGDPKQCRTAEICNTLKTLAAQI 731
            F + D     + EI   L  +  ++
Sbjct: 838 KFTARDKSHPESKEIYEKLSEVTRKL 863



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 150/568 (26%), Positives = 264/568 (46%), Gaps = 71/568 (12%)

Query: 109 FSWALMITCYTRKGELEKAREL----FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLD 164
           F++ L + C  R+  + + R+L    F   P+ E       +V  Y K G+ ++A+K+ D
Sbjct: 83  FAYVLEL-CGKRRA-VSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFD 140

Query: 165 AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDS 220
            MP +   +WN+M+  Y  NGE   A   +  M    V     S+  +L    +L D+ S
Sbjct: 141 EMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRS 200

Query: 221 AWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYV 275
             +    + +    S       ++S YA+N  +  ARRLFD    + + V WN+++++Y 
Sbjct: 201 GSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYS 260

Query: 276 QRGQIEEAARLFIEMPERNP-------VSWTTMIDG--YVRIAKLDEARRLLDQMPYKNI 326
             G+  E   LF EM    P       VS  T  DG  Y ++ K   A  L        +
Sbjct: 261 TSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSEL 320

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV-- 384
               A+I+ Y +  +M +A +I  ++   DVV WN +IKGY Q     EA+  F  M+  
Sbjct: 321 YVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAA 380

Query: 385 --NKDIVTWNTMIAGYAQIRQM----------------------DDAVKIFEE------M 414
               D V+  ++IA   ++  +                      +  + ++ +      M
Sbjct: 381 GHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYM 440

Query: 415 GKR------RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
           G+       ++ +SW  +I+G+ QN+ H++AL++F  + ++  + D   L   L A + L
Sbjct: 441 GRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVL 500

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
            ++ + ++IH   ++ G + D  + N L+ +Y KC  +  A  +F+     DV+SW S+I
Sbjct: 501 KSMLIVKEIHCHILRKGLL-DTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMI 559

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG-------LKLFEC 581
           +  A+NGN +EA++LF  MV  G++ D V  + +LSA + +  ++ G       L+   C
Sbjct: 560 SSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFC 619

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRLD 609
           +    A+  +V+ YAC  DL S     D
Sbjct: 620 LEGSIAV-AVVDMYACCGDLQSAKAVFD 646



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 94/425 (22%), Positives = 175/425 (41%), Gaps = 58/425 (13%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
           + AS+       S ++  N  I    + G++ +A +I  QM+  + VT+NS+I  Y +N 
Sbjct: 306 IHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNL 365

Query: 61  RVNDARKLFEQM----PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP---------- 106
              +A + F  M     + + VS  S+IA       +    EL   + +           
Sbjct: 366 MYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGN 425

Query: 107 ---DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKL- 162
              D++S    +TCY  +  L           + +D   W  ++AGYA+   + EA +L 
Sbjct: 426 TLIDMYS-KCNLTCYMGRAFLRM---------HDKDLISWTTVIAGYAQNDCHVEALELF 475

Query: 163 ---------LDAMPSKNIVSWNSMLSG--YTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
                    +D M   +I+  +S+L      K    H+  K        D V  N ++D 
Sbjct: 476 RDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-----LDTVIQNELVDV 530

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
           Y +  ++  A + F+ I  ++VVSW +M+S  A NG   EA  LF +M    + A +  +
Sbjct: 531 YGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVAL 590

Query: 272 ---------AAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
                     + + +G+      L         ++   ++D Y     L  A+ + D++ 
Sbjct: 591 LCILSAAASLSALNKGREIHCYLLRKGFCLEGSIA-VAVVDMYACCGDLQSAKAVFDRIE 649

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV----VCWNVMIKGYAQCGRMDEAIN 378
            K +   T+MI+ Y  +     A ++FDK+   +V    + +  ++   +  G +DE   
Sbjct: 650 RKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRG 709

Query: 379 LFRQM 383
             + M
Sbjct: 710 FLKIM 714


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  349 bits (895), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 192/574 (33%), Positives = 297/574 (51%), Gaps = 79/574 (13%)

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER---- 293
           +++  Y   G +   RR+FD+M  RNVV+W ++I  Y +RG  +EA  LF EM E     
Sbjct: 179 SLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRP 238

Query: 294 -----------------------------------NPVSWTTMIDGYVRIAKLDEARRLL 318
                                              N +    ++D Y++   +D+AR++ 
Sbjct: 239 NSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIF 298

Query: 319 DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH--------------------DVV 358
           D+   KN+     ++S YV+     E   +  ++  H                    DV 
Sbjct: 299 DECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVS 358

Query: 359 C---------------W----NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYA 399
           C               W    N +I  Y +CG+ + A  +F +M+NK  V+WN++IAG+ 
Sbjct: 359 CGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFV 418

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
           +   M+ A KIF  M    + VSWN +I   +Q     +A+++F +M  EG  AD  T+ 
Sbjct: 419 RNGDMESAWKIFSAM-PDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMV 477

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
              SAC +L AL L + IH    K     D+ +G +L+ M+A+CG  Q+A  +F      
Sbjct: 478 GVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKR 537

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
           DV +W + I   A+ GN T AI+LF+EM+ +G+ PD V F+ +L+A SH GLV+ G  +F
Sbjct: 538 DVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIF 597

Query: 580 ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
             M ++Y I P   HY CM+DLL RAG L EA  ++  M+++PN  IWG+LL ACR+H+N
Sbjct: 598 RSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKN 657

Query: 640 IKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
           + +   A E++SEL+P++T  + LLSN++A AGRWD+V KVR+ ++  GA K PG S IE
Sbjct: 658 VDIAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIE 717

Query: 700 VKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           +  +I  F +GD        I   LK +  ++R+
Sbjct: 718 INGKIFEFTTGDESHPEMTHIEPMLKEICCRLRD 751



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/429 (26%), Positives = 203/429 (47%), Gaps = 37/429 (8%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           +++    NS+I  Y + G ++  R++F++M +RN+VSW S+I GY      KEA  LF +
Sbjct: 171 ERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFE 230

Query: 103 M----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGN 155
           M     RP+  +   +I+   +  +L+   ++   +   E   +    NA+V  Y K G 
Sbjct: 231 MVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGA 290

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER-------DVVSWNLM 208
            ++A+K+ D    KN+V +N+++S Y + G   LA +    + E        D ++    
Sbjct: 291 IDKARKIFDECVDKNLVLYNTIMSNYVRQG---LAREVLAVLGEMLKHGPRPDRITMLSA 347

Query: 209 LDGYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNV 264
           +    ELDD+         +    +  W      +++ Y + G+   A R+FD+M  +  
Sbjct: 348 VSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTR 407

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
           V+WN++IA +V+ G +E A ++F  MP+ + VSW TMI   V+ +   EA  L   M  +
Sbjct: 408 VSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSE 467

Query: 325 NIAAQTAMISGYVQN----KRMDEANQIFDKIGTHDV----VCWNVMIKGYAQCGRMDEA 376
            I A    + G          +D A  I   I   D+         ++  +A+CG    A
Sbjct: 468 GITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSA 527

Query: 377 INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALIS----- 428
           + +F +MV +D+  W   I   A       A+++F+EM   G + + V + AL++     
Sbjct: 528 MQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHG 587

Query: 429 GFLQNEFHL 437
           G ++  +H+
Sbjct: 588 GLVEQGWHI 596



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 116/493 (23%), Positives = 212/493 (43%), Gaps = 65/493 (13%)

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           F  D+F    +I  Y   GE++  R +FD +  + +   W +++ GYAK G Y EA  L 
Sbjct: 170 FERDMFVENSLIHFYGECGEIDCMRRVFDKMSER-NVVSWTSLIGGYAKRGCYKEAVSLF 228

Query: 164 DAMPS----KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVEL 215
             M       N V+   ++S   K  ++ L  +    + E ++    +  N ++D Y++ 
Sbjct: 229 FEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKC 288

Query: 216 DDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM---------------- 259
             +D A K F +  ++N+V + T++S Y R G   E   +  +M                
Sbjct: 289 GAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAV 348

Query: 260 ------------------PIRN-VVAW----NAMIAAYVQRGQIEEAARLFIEMPERNPV 296
                              +RN +  W    NA+I  Y++ G+ E A R+F  M  +  V
Sbjct: 349 SACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRV 408

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHD 356
           SW ++I G+VR   ++ A ++   MP  ++ +   MI   VQ     EA ++F  + +  
Sbjct: 409 SWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEG 468

Query: 357 VVCWNVMIKGYAQ-CGRMDEAINLFRQM--------VNKDIVTWNTMIAGYAQIRQMDDA 407
           +    V + G A  CG +  A++L + +        ++ D+     ++  +A+      A
Sbjct: 469 ITADKVTMVGVASACGYLG-ALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSA 527

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
           +++F +M K R+  +W A I           A+++F  M Q+G K D       L+A +H
Sbjct: 528 MQVFNKMVK-RDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSH 586

Query: 468 LAALQLGRQIHHLAIKS--GYVNDLFVGNSLITMYAKCGRIQNAELLFKD--ADPVDVIS 523
              ++ G  I   ++K   G          ++ +  + G +  A  L      +P DVI 
Sbjct: 587 GGLVEQGWHIFR-SMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVI- 644

Query: 524 WNSLIAGYAINGN 536
           W SL+A   ++ N
Sbjct: 645 WGSLLAACRVHKN 657



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/256 (30%), Positives = 125/256 (48%), Gaps = 12/256 (4%)

Query: 367 YAQCGRMDEAINLFRQMVNK----------DIVTWNTMIAGYAQIRQMDDAVKIF-EEMG 415
           + +C  M E   L  Q+             ++++  T +  +  +     A+++F E+ G
Sbjct: 40  FKKCKTMTELKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNG 99

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
                  +++LI GF        A+ +F  +   G   D+ T    LSAC   AAL  G 
Sbjct: 100 IMGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGF 159

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
           Q+H   +K G+  D+FV NSLI  Y +CG I     +F      +V+SW SLI GYA  G
Sbjct: 160 QVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRG 219

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHY 595
              EA+ LF EMV  G+ P+ VT +GV+SAC+ +  +  G ++  C+ E+  +E      
Sbjct: 220 CYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGEL-ELEVNALMV 278

Query: 596 ACMIDLLSRAGRLDEA 611
             ++D+  + G +D+A
Sbjct: 279 NALVDMYMKCGAIDKA 294



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 97/406 (23%), Positives = 181/406 (44%), Gaps = 51/406 (12%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           N +  N+++  Y K G ++ ARK+F++   +NLV +N++++ Y+     +E   +  +M 
Sbjct: 274 NALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEML 333

Query: 105 ----RPDLFSWALMITCYTRKGELEKAR-----ELFDLLPNKE--DTACWNAMVAGYAKI 153
               RPD  +   M++  +   EL+          + L    E  D  C NA++  Y K 
Sbjct: 334 KHGPRPDRIT---MLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVC-NAIINMYMKC 389

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV 213
           G    A ++ D M +K  VSWNS+++G+ +NG+M  A K F AM + D+VSWN M+   V
Sbjct: 390 GKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALV 449

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
           +      A + F+ +  + + +    + G A     L A  L           W   I  
Sbjct: 450 QESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDL---------AKW---IHG 497

Query: 274 YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMI 333
           Y+++  I     L            T ++D + R      A ++ ++M  ++++A TA I
Sbjct: 498 YIKKKDIHFDMHL-----------GTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAI 546

Query: 334 SGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI- 388
                      A ++FD++       D V +  ++   +  G +++  ++FR M  KDI 
Sbjct: 547 GAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSM--KDIY 604

Query: 389 ------VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
                 V +  M+    +   + +A+ +   M    N V W +L++
Sbjct: 605 GIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLA 650



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/294 (24%), Positives = 132/294 (44%), Gaps = 17/294 (5%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I    K G+ E A ++F +M  K  V++NS+I+ + +NG +  A K+F  MP  +LV
Sbjct: 380 NAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLV 439

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLL 134
           SWN+MI   +     KEA ELF  M       D  +   + +     G L+ A+ +   +
Sbjct: 440 SWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYI 499

Query: 135 PNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
             K+   D     A+V  +A+ G+   A ++ + M  +++ +W + +      G    A 
Sbjct: 500 KKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAI 559

Query: 192 KFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPE-----QNVVSWVTMLSG 242
           + F+ M ++    D V +  +L        ++  W  F+ + +        V +  M+  
Sbjct: 560 ELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDL 619

Query: 243 YARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
             R G + EA  L + M +  N V W +++AA      ++ AA     + E +P
Sbjct: 620 LGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELDP 673


>gi|15223809|ref|NP_177827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098688|sp|O49287.1|PP127_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial; Flags: Precursor
 gi|2829915|gb|AAC00623.1| Hypothetical protein [Arabidopsis thaliana]
 gi|332197804|gb|AEE35925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 695

 Score =  349 bits (895), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 204/668 (30%), Positives = 346/668 (51%), Gaps = 49/668 (7%)

Query: 46  TVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR 105
            +  N ++  Y+++G++  AR LF++MP RN  SWN+MI GY+++ +   +   FD M  
Sbjct: 62  VIVANHLLQMYSRSGKMGIARNLFDEMPDRNYFSWNTMIEGYMNSGEKGTSLRFFDMMPE 121

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL-- 163
            D +SW ++++ + + GEL  AR LF+ +P K D    N+++ GY   G   EA +L   
Sbjct: 122 RDGYSWNVVVSGFAKAGELSVARRLFNAMPEK-DVVTLNSLLHGYILNGYAEEALRLFKE 180

Query: 164 -----DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDL 218
                DA+    ++   + L       ++H  ++      E D    + +++ Y +  DL
Sbjct: 181 LNFSADAITLTTVLKACAELEALKCGKQIH--AQILIGGVECDSKMNSSLVNVYAKCGDL 238

Query: 219 DSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
             A    ++I E +  S   ++SGYA  GR+ E+R LFD+   R V+ WN+MI+ Y+   
Sbjct: 239 RMASYMLEQIREPDDHSLSALISGYANCGRVNESRGLFDRKSNRCVILWNSMISGYIANN 298

Query: 279 QIEEAARLFIEM---PERNPVSWTTMIDGYVRIAKLDEARRLLDQMP----YKNIAAQTA 331
              EA  LF EM      +  +   +I+  + +  L+  +++           +I   + 
Sbjct: 299 MKMEALVLFNEMRNETREDSRTLAAVINACIGLGFLETGKQMHCHACKFGLIDDIVVAST 358

Query: 332 MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTW 391
           ++  Y +     EA ++F ++ ++D +  N MIK Y  CGR+D+A  +F ++ NK +++W
Sbjct: 359 LLDMYSKCGSPMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDAKRVFERIENKSLISW 418

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
           N+M                                 +GF QN   ++ L+ F  M +   
Sbjct: 419 NSM--------------------------------TNGFSQNGCTVETLEYFHQMHKLDL 446

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL 511
             D  +L+  +SACA +++L+LG Q+   A   G  +D  V +SLI +Y KCG +++   
Sbjct: 447 PTDEVSLSSVISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRR 506

Query: 512 LFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
           +F      D + WNS+I+GYA NG   EAI LF++M + G+ P  +TF+ VL+AC++ GL
Sbjct: 507 VFDTMVKSDEVPWNSMISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGL 566

Query: 572 VDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           V+ G KLFE M   +   P  EH++CM+DLL+RAG ++EA  +V+ M    +  +W ++L
Sbjct: 567 VEEGRKLFESMKVDHGFVPDKEHFSCMVDLLARAGYVEEAINLVEEMPFDVDGSMWSSIL 626

Query: 632 GACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQK 691
             C  +    +G+ A EK+ ELEP+ +  Y  LS + A +G W+    VR  M  +   K
Sbjct: 627 RGCVANGYKAMGKKAAEKIIELEPENSVAYVQLSAIFATSGDWESSALVRKLMRENNVTK 686

Query: 692 QPGCSWIE 699
            PG SW +
Sbjct: 687 NPGSSWTD 694



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 152/596 (25%), Positives = 278/596 (46%), Gaps = 110/596 (18%)

Query: 168 SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK 227
           S  ++  N +L  Y+++G+M +A   F+ M +R+  SWN M++GY+   +  ++ +FF  
Sbjct: 59  SSIVIVANHLLQMYSRSGKMGIARNLFDEMPDRNYFSWNTMIEGYMNSGEKGTSLRFFDM 118

Query: 228 IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF 287
           +PE++  SW  ++SG+A+ G +  ARRLF+ MP ++VV  N+++  Y+  G  EEA RLF
Sbjct: 119 MPERDGYSWNVVVSGFAKAGELSVARRLFNAMPEKDVVTLNSLLHGYILNGYAEEALRLF 178

Query: 288 IEMP-ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG----YVQNKRM 342
            E+    + ++ TT++     +  L   +++  Q+    +   + M S     Y +   +
Sbjct: 179 KELNFSADAITLTTVLKACAELEALKCGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDL 238

Query: 343 DEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIR 402
             A+ + ++I   D    + +I GYA CGR++E+  LF +  N+ ++ WN+MI+GY    
Sbjct: 239 RMASYMLEQIREPDDHSLSALISGYANCGRVNESRGLFDRKSNRCVILWNSMISGY---- 294

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
                                       + N   ++AL +F  M  E ++ D  TLA  +
Sbjct: 295 ----------------------------IANNMKMEALVLFNEMRNETRE-DSRTLAAVI 325

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK-------------------- 502
           +AC  L  L+ G+Q+H  A K G ++D+ V ++L+ MY+K                    
Sbjct: 326 NACIGLGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTI 385

Query: 503 -----------CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
                      CGRI +A+ +F+  +   +ISWNS+  G++ NG   E ++ F +M    
Sbjct: 386 LLNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLD 445

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLF---------------ECMTEVYAIEPLVEH-- 594
           +  D V+   V+SAC+ +  ++ G ++F                 + ++Y     VEH  
Sbjct: 446 LPTDEVSLSSVISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGR 505

Query: 595 -------------YACMIDLLSRAGRLDEAFEMVKGMK---IKPNAGIWGTLLGACRMHQ 638
                        +  MI   +  G+  EA ++ K M    I+P    +  +L AC    
Sbjct: 506 RVFDTMVKSDEVPWNSMISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCG 565

Query: 639 NIKLGRIAVEKLS---ELEPQKTSCYALLSNMHAEAGRWDE----VEKVRVSMEGS 687
            ++ GR   E +       P K   ++ + ++ A AG  +E    VE++   ++GS
Sbjct: 566 LVEEGRKLFESMKVDHGFVPDKEH-FSCMVDLLARAGYVEEAINLVEEMPFDVDGS 620



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 142/595 (23%), Positives = 271/595 (45%), Gaps = 59/595 (9%)

Query: 9   GNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKL 68
           G   S V   N  +    +SG++  A  +F +M  +N  ++N+MI  Y  +G    + + 
Sbjct: 56  GFLSSIVIVANHLLQMYSRSGKMGIARNLFDEMPDRNYFSWNTMIEGYMNSGEKGTSLRF 115

Query: 69  FEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAR 128
           F+ MP+R+  SWN +++G+    ++  AR LF+ M   D+ +   ++  Y   G  E+A 
Sbjct: 116 FDMMPERDGYSWNVVVSGFAKAGELSVARRLFNAMPEKDVVTLNSLLHGYILNGYAEEAL 175

Query: 129 ELFDLLPNKEDTACWNAMVAGYA-----KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK 183
            LF  L    D      ++   A     K G    A+ L+  +   + ++ +S+++ Y K
Sbjct: 176 RLFKELNFSADAITLTTVLKACAELEALKCGKQIHAQILIGGVECDSKMN-SSLVNVYAK 234

Query: 184 NGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGY 243
            G++ +AS   E + E D  S + ++ GY     ++ +   F +   + V+ W +M+SGY
Sbjct: 235 CGDLRMASYMLEQIREPDDHSLSALISGYANCGRVNESRGLFDRKSNRCVILWNSMISGY 294

Query: 244 ARNGRMLEARRLFDQMPIRNVV-----AWNAMIAAYVQRGQIEEAARLFIEMPE----RN 294
             N   +EA  LF++M  RN          A+I A +  G +E   ++     +     +
Sbjct: 295 IANNMKMEALVLFNEM--RNETREDSRTLAAVINACIGLGFLETGKQMHCHACKFGLIDD 352

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
            V  +T++D Y +     EA +L  ++   +     +MI  Y    R+D+A ++F++I  
Sbjct: 353 IVVASTLLDMYSKCGSPMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDAKRVFERIEN 412

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI----VTWNTMIAGYAQIRQMDDAVKI 410
             ++ WN M  G++Q G   E +  F QM   D+    V+ +++I+  A I  ++   ++
Sbjct: 413 KSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASISSLELGEQV 472

Query: 411 FE---------------------------EMGKR-------RNTVSWNALISGFLQNEFH 436
           F                            E G+R        + V WN++ISG+  N   
Sbjct: 473 FARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRRVFDTMVKSDEVPWNSMISGYATNGQG 532

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI-HHLAIKSGYVNDLFVGNS 495
            +A+ +F  M+  G +    T    L+AC +   ++ GR++   + +  G+V D    + 
Sbjct: 533 FEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGLVEEGRKLFESMKVDHGFVPDKEHFSC 592

Query: 496 LITMYAKCGRIQNAELLFKDADPVDVIS--WNSLIAGYAINGNATEAIKLFEEMV 548
           ++ + A+ G ++ A  L ++  P DV    W+S++ G   NG      K  E+++
Sbjct: 593 MVDLLARAGYVEEAINLVEEM-PFDVDGSMWSSILRGCVANGYKAMGKKAAEKII 646


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  348 bits (894), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 206/654 (31%), Positives = 360/654 (55%), Gaps = 62/654 (9%)

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
           ++ D     ++V  Y K  +  + +K+ +AMP +N+V+W S+L+GY ++G +    + F 
Sbjct: 135 DRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFF 194

Query: 196 AMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNG 247
            M    V    V++  +L        +D   +   +  +    S V    ++++ YA+ G
Sbjct: 195 RMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCG 254

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS------WTTM 301
            + EAR +F  M  R++V+WN ++A  V  G   EA +LF +   R+ ++      + T+
Sbjct: 255 LVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHD--SRSSITMLTQSTYATV 312

Query: 302 IDGYVRIAKLDEARRLLDQM------PYKNIAAQTAMISGYVQNKRMDEANQIFDKI-GT 354
           I     I +L  AR+L   +       Y N+   TA++  Y +  ++  A  IF  + G+
Sbjct: 313 IKLCANIKQLGLARQLHSSVLKRGFHSYGNV--MTALMDAYSKAGQLGNALDIFLLMSGS 370

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNT----------------- 393
            +VV W  MI G  Q G +  A  LF +M    V  +  T++T                 
Sbjct: 371 QNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVASLPPQIHAQV 430

Query: 394 --------------MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDA 439
                         ++A Y+++   ++A+ IF+ M  +++ VSW+A+++ + Q      A
Sbjct: 431 IKTNYECTSIVGTALLASYSKLCNTEEALSIFK-MIDQKDVVSWSAMLTCYAQAGDSDGA 489

Query: 440 LKIFVLMTQEGKKADHSTLACALSACAH-LAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
             IF+ MT  G K +  T++  + ACA   A + LGRQ H ++IK    + L V ++L++
Sbjct: 490 TNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVS 549

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           MYA+ G I++A+ +F+     D++SWNS+++GYA +G + +A+ +F +M  EG+  D VT
Sbjct: 550 MYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVT 609

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
           F+ V+  C+H GLV+ G + F+ M   Y I P +EHYACM+DL SRAG+LDEA  +++GM
Sbjct: 610 FLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGM 669

Query: 619 KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVE 678
                  +W TLLGAC++H+N++LG++A EKL  LEP  ++ Y LLSN+++ AG+W E +
Sbjct: 670 SFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAGKWKEKD 729

Query: 679 KVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +VR  M+    +K+ GCSWI++KN++H+F++ D     + +I   L+ +  +++
Sbjct: 730 EVRKLMDTKKVKKEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLRAMTTKLK 783



 Score =  162 bits (409), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 138/579 (23%), Positives = 256/579 (44%), Gaps = 76/579 (13%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR---- 105
            S++  Y K   V D RK+FE MP+RN+V+W S++ GY+ +  + +  ELF +M      
Sbjct: 143 TSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVW 202

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTAC------WNAMVAGYAKIGNYNEA 159
           P+  ++A +++    +G ++  R +           C       N+++  YAK G   EA
Sbjct: 203 PNSVTFASVLSVVASQGMVDLGRRVH---AQSVKFGCCSTVFVCNSLMNMYAKCGLVEEA 259

Query: 160 KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV------SWNLMLDGYV 213
           + +   M ++++VSWN++++G   NG    A + F   + R  +      ++  ++    
Sbjct: 260 RVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFH--DSRSSITMLTQSTYATVIKLCA 317

Query: 214 ELDDLDSAWKFFQKIPEQNVVSW----VTMLSGYARNGRMLEARRLFDQMP-IRNVVAWN 268
            +  L  A +    + ++   S+      ++  Y++ G++  A  +F  M   +NVV+W 
Sbjct: 318 NIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWT 377

Query: 269 AMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYV-RIAKLDEARRLLDQMPY 323
           AMI   +Q G +  AA LF  M E     N  +++T++   V  +     A+ +      
Sbjct: 378 AMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVASLPPQIHAQVIKTNYEC 437

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
            +I   TA+++ Y +    +EA  IF  I   DVV W+ M+  YAQ G  D A N+F +M
Sbjct: 438 TSIVG-TALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKM 496

Query: 384 V----------------------------------------NKDIVTWNTMIAGYAQIRQ 403
                                                    +  +   + +++ YA+   
Sbjct: 497 TMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGS 556

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS 463
           ++ A  IFE     R+ VSWN+++SG+ Q+ +   AL +F  M  EG + D  T    + 
Sbjct: 557 IESAQCIFERQ-TDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIM 615

Query: 464 ACAHLAALQLG-RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD-PVDV 521
            CAH   ++ G R    +A   G    +     ++ +Y++ G++  A  L +    P   
Sbjct: 616 GCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGP 675

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
           + W +L+    ++ N  E  KL  E ++     D  T++
Sbjct: 676 MVWRTLLGACKVHKN-VELGKLAAEKLLSLEPFDSATYV 713



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 97/448 (21%), Positives = 192/448 (42%), Gaps = 66/448 (14%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFE-- 70
           S VF  N  +    K G VEEA  +F  M  ++ V++N++++    NG   +A +LF   
Sbjct: 238 STVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDS 297

Query: 71  --QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMIT----CYTRKGEL 124
              +      ++ ++I    +  ++  AR+L   + +    S+  ++T     Y++ G+L
Sbjct: 298 RSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQL 357

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI------------- 171
             A ++F L+   ++   W AM+ G  + G+   A  L   M    +             
Sbjct: 358 GNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTA 417

Query: 172 ----------------------VSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML 209
                                 +   ++L+ Y+K      A   F+ ++++DVVSW+ ML
Sbjct: 418 SVASLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAML 477

Query: 210 DGYVELDDLDSAWKFFQKI------PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRN 263
             Y +  D D A   F K+      P +  +S  +++   A     ++  R F  + I++
Sbjct: 478 TCYAQAGDSDGATNIFIKMTMHGLKPNEFTIS--SVIDACASPTAGVDLGRQFHAISIKH 535

Query: 264 -----VVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
                +   +A+++ Y ++G IE A  +F    +R+ VSW +M+ GY +     +A  + 
Sbjct: 536 RCHDALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVF 595

Query: 319 DQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIG-----THDVVCWNVMIKGYAQ 369
            QM  + I        ++I G      ++E  + FD +      T  +  +  M+  Y++
Sbjct: 596 RQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSR 655

Query: 370 CGRMDEAINLFRQM-VNKDIVTWNTMIA 396
            G++DEA++L   M      + W T++ 
Sbjct: 656 AGKLDEAMSLIEGMSFPAGPMVWRTLLG 683



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 115/235 (48%), Gaps = 19/235 (8%)

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ-EGKKADHSTLACALSAC 465
           A + F+E+   RNT+  +AL     +   H  AL  F+ + +  G +     L   L  C
Sbjct: 57  ARQAFDEI-PHRNTLD-HALFDHARRGSVH-QALDHFLDVHRCHGGRVGGGALVGVLKVC 113

Query: 466 AHLAALQLGRQIHHLAIKSGY-VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
             +    LG+Q+H L I+ G+   D+ VG SL+ MY K   + +   +F+     +V++W
Sbjct: 114 GSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTW 173

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL------ 578
            SL+ GY  +G  ++ ++LF  M  EGV P+ VTF  VLS  +  G+VD G ++      
Sbjct: 174 TSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVK 233

Query: 579 FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
           F C + V+    L+  YA       + G ++EA  +  GM+ +     W TL+  
Sbjct: 234 FGCCSTVFVCNSLMNMYA-------KCGLVEEARVVFCGMETRDMVS-WNTLMAG 280



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/200 (28%), Positives = 102/200 (51%), Gaps = 21/200 (10%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL 88
           GR   AI I  +      V+ ++++S YA+ G +  A+ +FE+   R+LVSWNSM++GY 
Sbjct: 525 GRQFHAISIKHRCHDALCVS-SALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYA 583

Query: 89  HNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFD-------LLPNK 137
            +   ++A ++F +M       D  ++  +I      G +E+ +  FD       + P  
Sbjct: 584 QHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTM 643

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAM--PSKNIVSWNSMLSG--YTKNGEM-HLASK 192
           E  AC   MV  Y++ G  +EA  L++ M  P+  +V W ++L      KN E+  LA++
Sbjct: 644 EHYAC---MVDLYSRAGKLDEAMSLIEGMSFPAGPMV-WRTLLGACKVHKNVELGKLAAE 699

Query: 193 FFEAMEERDVVSWNLMLDGY 212
              ++E  D  ++ L+ + Y
Sbjct: 700 KLLSLEPFDSATYVLLSNIY 719



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 15/160 (9%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL---- 77
           ++   + G +E A  IF + + ++ V++NSM+S YA++G    A  +F QM    +    
Sbjct: 548 VSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDG 607

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARELFD 132
           V++ S+I G  H   V+E +  FD M R     P +  +A M+  Y+R G+L++A  L +
Sbjct: 608 VTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIE 667

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNE-----AKKLLDAMP 167
            +        W  ++ G  K+    E     A+KLL   P
Sbjct: 668 GMSFPAGPMVWRTLL-GACKVHKNVELGKLAAEKLLSLEP 706


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  348 bits (894), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 228/766 (29%), Positives = 393/766 (51%), Gaps = 96/766 (12%)

Query: 57  AKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWA 112
           +++ R+  A++LF+  P R+++SW+++IA Y       +A  LF KM     +P+ FS A
Sbjct: 66  SEHERLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLA 125

Query: 113 LMITCYTRKGELEKAREL--------FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLD 164
            ++      GE+   R+L        F L     D+    A +  Y++ G   +A+++ D
Sbjct: 126 SLLKVSCSTGEIGLCRQLHGWSIRTGFGL-----DSGIRAAWITMYSRCGVLEDAQRVFD 180

Query: 165 --AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAW 222
             ++ + +I+ WNS+++ Y  +G      + F  M    VV+   +    V      S  
Sbjct: 181 ETSLLALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGE 240

Query: 223 KFFQKIPEQNVVS--------WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
           + +  +    ++         W ++++ Y + G +  A +LF+++  ++VV+WNAMIAA 
Sbjct: 241 EKYGAMVHGRIIKAGLEATNLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAAN 300

Query: 275 VQRGQIEEAARLF-----IEMP-ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA 328
            QRG+ E A  LF     +E P + N V++ +++     ++ L   R +   +   ++  
Sbjct: 301 EQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEV 360

Query: 329 QTA----MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
            T+    +I+ Y + + + +A +IF+++   D++ WN M+ GY Q  +     ++F++M+
Sbjct: 361 DTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMM 420

Query: 385 ------------------------------NKDIVTW---------------NTMIAGYA 399
                                          K+I  +               N ++  YA
Sbjct: 421 LSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGGVSLSVSNAILKMYA 480

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
           +  ++ DA KIF+ M K R++ SWNA++ G+ +N    D L IF+ + ++G   DH +L+
Sbjct: 481 KFNRIADAEKIFKGM-KNRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLS 539

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGYVND-------LFVGNSLITMYAKCGRIQNAELL 512
             L++C  L +LQLG+Q H +  K     D       L + N+LI+MY+KCG I++A  +
Sbjct: 540 ILLTSCGRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQV 599

Query: 513 FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
           F   +  DV SW ++I G A +G A EA++LFE M  +G+ P+ VTF+ +L AC+H GLV
Sbjct: 600 FLKMERKDVFSWTAMITGCAHHGLAVEALQLFERMKTDGIKPNQVTFLALLMACAHGGLV 659

Query: 573 DGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVK-GMKI-KPNA----GI 626
             G   F+ M   Y + P +EHYACMIDL  R+G+ D A  +V+ G+ + KP       +
Sbjct: 660 QEGSYYFDSMYNDYGLSPSIEHYACMIDLFGRSGQFDRAKSLVEFGITLFKPYHDDILNL 719

Query: 627 WGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEG 686
           W  LLGAC   + + LG  A  K+ ELEP+  + Y LL+N++A +G W++  KVR +M  
Sbjct: 720 WKVLLGACHASKQLDLGVEAATKILELEPEDEATYILLANLYASSGLWEDAIKVRKAMRD 779

Query: 687 SGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            G +K+ GCSWI+  N+ H F++GD    +  EI   L  L    R
Sbjct: 780 KGLRKEVGCSWIDTGNRRHVFVAGDVYHPQRKEIYEKLAQLNYSCR 825



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 123/517 (23%), Positives = 211/517 (40%), Gaps = 92/517 (17%)

Query: 160 KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLD 219
           + LL ++ S N+ S+   L  + +N ++   +  F +       + +  L    E + L 
Sbjct: 15  RPLLPSIKS-NVTSFR-FLHSHLRNKQLEFQNHGFSSQFIFRCSACSKFLVSQSEHERLK 72

Query: 220 SAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM------P------------- 260
            A + F   P ++V+SW  +++ Y+R G   +A  LF +M      P             
Sbjct: 73  CAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKVSC 132

Query: 261 -------IRNVVAWN-------------AMIAAYVQRGQIEEAARLFIE--MPERNPVSW 298
                   R +  W+             A I  Y + G +E+A R+F E  +   + + W
Sbjct: 133 STGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDILLW 192

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD-------- 350
            ++I  Y+      E  RL  +M    + A T +    V N       + +         
Sbjct: 193 NSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRII 252

Query: 351 KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKI 410
           K G      WN ++  Y +CG +  A  LF ++  KD+V+WN MIA   Q  + ++A+ +
Sbjct: 253 KAGLEATNLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENALGL 312

Query: 411 FEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAA 470
           F  M K    V  N +                              T    LSA + L+A
Sbjct: 313 FRRMLKVEPPVQPNRV------------------------------TFLSLLSAVSGLSA 342

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
           L+ GR+IH    +     D  + NSLIT Y+KC  +  A  +F+     D+ISWNS++AG
Sbjct: 343 LRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAG 402

Query: 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYA--- 587
           Y  N        +F+ M++ G+ PD  +   + +A S       GL  F    E++    
Sbjct: 403 YEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASR---DSSGLIYFRRGKEIHGYIL 459

Query: 588 --IEP---LVEHYACMIDLLSRAGRLDEAFEMVKGMK 619
             I P    +     ++ + ++  R+ +A ++ KGMK
Sbjct: 460 RRITPGGVSLSVSNAILKMYAKFNRIADAEKIFKGMK 496



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/308 (21%), Positives = 121/308 (39%), Gaps = 66/308 (21%)

Query: 5   LKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND 64
           L+ I   G  +   N  +    K  R+ +A KIF  M  +++ ++N+M+  Y++N +  D
Sbjct: 459 LRRITPGGVSLSVSNAILKMYAKFNRIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFED 518

Query: 65  ARKLF-----EQMP----------------------------------------QRNLVS 79
              +F     +  P                                        Q +L+S
Sbjct: 519 VLMIFLDILKQGFPLDHVSLSILLTSCGRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLS 578

Query: 80  W-NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN-- 136
             N++I+ Y     +K+A ++F KM R D+FSW  MIT     G   +A +LF+ +    
Sbjct: 579 INNALISMYSKCGSIKDAAQVFLKMERKDVFSWTAMITGCAHHGLAVEALQLFERMKTDG 638

Query: 137 -KEDTACWNAMVAGYAKIGNYNEAKKLLDAMP-----SKNIVSWNSMLSGYTKNGEMHLA 190
            K +   + A++   A  G   E     D+M      S +I  +  M+  + ++G+   A
Sbjct: 639 IKPNQVTFLALLMACAHGGLVQEGSYYFDSMYNDYGLSPSIEHYACMIDLFGRSGQFDRA 698

Query: 191 SK-------FFEAMEERDVVSWNLMLDGYVELDDLD----SAWKFFQKIPEQNVVSWVTM 239
                     F+   +  +  W ++L        LD    +A K  +  PE    +++ +
Sbjct: 699 KSLVEFGITLFKPYHDDILNLWKVLLGACHASKQLDLGVEAATKILELEPEDE-ATYILL 757

Query: 240 LSGYARNG 247
            + YA +G
Sbjct: 758 ANLYASSG 765


>gi|224124484|ref|XP_002319343.1| predicted protein [Populus trichocarpa]
 gi|222857719|gb|EEE95266.1| predicted protein [Populus trichocarpa]
          Length = 848

 Score =  348 bits (894), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 222/761 (29%), Positives = 387/761 (50%), Gaps = 93/761 (12%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQ-----RNLVSWNSMIAGYLHNDKVKEARELFDKM-- 103
           S+I+ Y K G   +A K+F+++P+     +++  WNS++ GY      KE    F +M  
Sbjct: 90  SLINFYFKCGSFGNAVKVFDKLPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQL 149

Query: 104 --FRPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNE 158
              RPD +S  +++      G L  A+++      K    D    + ++  Y   G   +
Sbjct: 150 FGVRPDAYSLCILLG--ASDGHLGYAKQIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLD 207

Query: 159 AKKLLDAMPSK-NIVSWNSMLSGYTKNG------EMHLASK-------------FFEAME 198
           A +L   +  K N+V+WN M+ G+ +NG      E++L +K                A  
Sbjct: 208 AWRLFKELEDKGNVVAWNVMIGGFGENGLWENSLEVYLLAKNENVKLVSASFTSTLSACC 267

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
           + + VS+ +     V  D +   +       E +     ++L+ Y++   + +A  +FDQ
Sbjct: 268 QGEFVSFGMQ----VHCDLVKLGF-------ENDPYVCTSLLTMYSKCKLVEDAENVFDQ 316

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEA 314
           + ++    WNAMI+AYV  G+  +  +++ +M       + ++ T ++     +   D  
Sbjct: 317 VSVKKTELWNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGSYDFG 376

Query: 315 R----RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC 370
           R     L+ +    N+A Q+A+++ Y +    D+AN IF+ I   DVV W  MI G+ Q 
Sbjct: 377 RLIHAELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGRDVVAWGSMISGFCQN 436

Query: 371 GRMDEAINLFRQM---------------------------------------VNKDIVTW 391
            +  EA+  +  M                                       + +D+   
Sbjct: 437 RKYMEALEFYNSMTVYGEKPDSDIMASVVSACTGLKNVNLGCTIHGLAIKSGLEQDVFVA 496

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
           ++++  Y++      +  +F +M   +N V+WN++IS + +N     ++ +F  MTQ G 
Sbjct: 497 SSLVDMYSKFNFPKMSGNVFSDM-PLKNLVAWNSIISCYCRNGLPDLSISLFSQMTQYGL 555

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL 511
             D  ++   L + + +A L+ G+ +H   I+    +DL + N+LI MY KCG ++ A+ 
Sbjct: 556 FPDSVSITSVLVSVSSVAVLRKGKAVHGYLIRQRIPSDLQLENALIDMYIKCGFLKYAQH 615

Query: 512 LFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
           +F++    ++++WN +IAG   +G+  +A+ LF+EM   G+APD +TFI +L++C+H G 
Sbjct: 616 IFQNMLQTNLVTWNIMIAGCGSHGDWLKAMSLFDEMRSFGIAPDDITFISLLTSCNHCGF 675

Query: 572 VDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           ++ GLKLF+ MT  + IEP +EHY  ++DLL RAGRLD+A+  VK + I+P+  IW +LL
Sbjct: 676 IEEGLKLFQLMTVEHGIEPRMEHYVNIVDLLGRAGRLDDAYAFVKNLPIEPDRSIWLSLL 735

Query: 632 GACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQK 691
            +CR+H N++LG++A  KL ++EP + S Y  L N++ E    D    +R SM+  G +K
Sbjct: 736 CSCRVHHNVELGKLAAHKLLDIEPSRGSNYVQLLNLYGENELQDRAANLRASMKEKGLKK 795

Query: 692 QPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            PGCSWIEV N I  F SGD    RT EI + L +L   +R
Sbjct: 796 TPGCSWIEVGNSIDVFFSGDSSSPRTIEIYDLLNSLRRNMR 836



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 98/416 (23%), Positives = 192/416 (46%), Gaps = 50/416 (12%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM-----PQRN 76
           +T   K   VE+A  +F Q+S K T  +N+MISAY  NGR  D  K+++QM     P  +
Sbjct: 298 LTMYSKCKLVEDAENVFDQVSVKKTELWNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDS 357

Query: 77  LVSWNSM----IAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD 132
           L + N +    + G     ++  A EL  +  + ++   + ++T Y++ G  + A  +F+
Sbjct: 358 LTATNVLSSCCLVGSYDFGRLIHA-ELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFN 416

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------PSKNIVSWNSMLSGYTKNGE 186
            +  + D   W +M++G+ +   Y EA +  ++M      P  +I++  S++S  T    
Sbjct: 417 TIKGR-DVVAWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMA--SVVSACTGLKN 473

Query: 187 MHLASKF----FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG 242
           ++L         ++  E+DV   + ++D Y + +    +   F  +P +N+V+W +++S 
Sbjct: 474 VNLGCTIHGLAIKSGLEQDVFVASSLVDMYSKFNFPKMSGNVFSDMPLKNLVAWNSIISC 533

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMI 302
           Y RNG    +  LF QM                Q G       LF +      V  +   
Sbjct: 534 YCRNGLPDLSISLFSQM---------------TQYG-------LFPDSVSITSVLVSVSS 571

Query: 303 DGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNV 362
              +R  K      +  ++P  ++  + A+I  Y++   +  A  IF  +   ++V WN+
Sbjct: 572 VAVLRKGKAVHGYLIRQRIP-SDLQLENALIDMYIKCGFLKYAQHIFQNMLQTNLVTWNI 630

Query: 363 MIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           MI G    G   +A++LF +M    +  D +T+ +++        +++ +K+F+ M
Sbjct: 631 MIAGCGSHGDWLKAMSLFDEMRSFGIAPDDITFISLLTSCNHCGFIEEGLKLFQLM 686



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 99/218 (45%), Gaps = 22/218 (10%)

Query: 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
           I   +Q   ++DAL+ +   ++    A   T    L AC  L+ LQ G+ IH   I  G+
Sbjct: 24  IVTLVQQGQYVDALQFY---SRNPLNATRFTYPSLLKACGFLSNLQYGKTIHSTIITKGF 80

Query: 487 V-NDLFVGNSLITMYAKCGRIQNAELLF-----KDADPVDVISWNSLIAGYAINGNATEA 540
             +D ++  SLI  Y KCG   NA  +F      +    DV  WNS++ GY   G+  E 
Sbjct: 81  FYSDPYITTSLINFYFKCGSFGNAVKVFDKLPESEVSGQDVTFWNSIVNGYFRFGHKKEG 140

Query: 541 IKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE-----CMTEVYAIEPLVEHY 595
           I  F  M + GV PD        S C  +G  DG L   +      + +V+  +P +E  
Sbjct: 141 IAQFCRMQLFGVRPD------AYSLCILLGASDGHLGYAKQIHGYSVRKVFYGDPFLE-- 192

Query: 596 ACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
           + +I +    GR  +A+ + K ++ K N   W  ++G 
Sbjct: 193 SGLIYMYFSCGRPLDAWRLFKELEDKGNVVAWNVMIGG 230



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 76/360 (21%), Positives = 140/360 (38%), Gaps = 86/360 (23%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           Q+  +T   K G  ++A  IF+ +  ++ V + SMIS                       
Sbjct: 395 QSALLTMYSKCGNSDDANSIFNTIKGRDVVAWGSMIS----------------------- 431

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDL 133
                   G+  N K  EA E ++ M     +PD    A +++  T    +     +  L
Sbjct: 432 --------GFCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSACTGLKNVNLGCTIHGL 483

Query: 134 LPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
                 ++D    +++V  Y+K      +  +   MP KN+V+WNS++S Y +NG   L+
Sbjct: 484 AIKSGLEQDVFVASSLVDMYSKFNFPKMSGNVFSDMPLKNLVAWNSIISCYCRNGLPDLS 543

Query: 191 SKFFEAMEE---------------------------------------RDVVSWNLMLDG 211
              F  M +                                        D+   N ++D 
Sbjct: 544 ISLFSQMTQYGLFPDSVSITSVLVSVSSVAVLRKGKAVHGYLIRQRIPSDLQLENALIDM 603

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAW 267
           Y++   L  A   FQ + + N+V+W  M++G   +G  L+A  LFD+M    +    + +
Sbjct: 604 YIKCGFLKYAQHIFQNMLQTNLVTWNIMIAGCGSHGDWLKAMSLFDEMRSFGIAPDDITF 663

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQMP 322
            +++ +    G IEE  +LF  M   + +      +  ++D   R  +LD+A   +  +P
Sbjct: 664 ISLLTSCNHCGFIEEGLKLFQLMTVEHGIEPRMEHYVNIVDLLGRAGRLDDAYAFVKNLP 723


>gi|222635245|gb|EEE65377.1| hypothetical protein OsJ_20684 [Oryza sativa Japonica Group]
          Length = 769

 Score =  348 bits (894), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 187/518 (36%), Positives = 288/518 (55%), Gaps = 53/518 (10%)

Query: 228 IPEQNVVSWVTMLSGYARNGRMLEARRLFDQ-MPIRN----VVAWNAMIAAYVQRGQIEE 282
           +P ++  S  TM+SG+ +NG + EA  L  + + + +    V A+N +I AY Q G+  +
Sbjct: 1   MPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSD 60

Query: 283 AARLFIEMP--------------ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA 328
           A RLF  +P              ERN VSW +M+  Y++   +  AR L ++MP K    
Sbjct: 61  AKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDK---- 116

Query: 329 QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
                                      D+V WN MI GY Q   M E+  LF +M + D 
Sbjct: 117 ---------------------------DLVSWNTMISGYTQASDMKESEKLFWEMPDPDT 149

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
           V+WN +I G+ Q  + + A   F+ M +R  T+SWN +ISG+ +N  ++ ++K+F  M +
Sbjct: 150 VSWNLIIQGFMQKGEAEHARGFFDRMPER-GTISWNTMISGYEKNGNYISSVKLFSKMLE 208

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
            G+  D  T +  L+ACA +  L LG QIH L  KS +V D  + N+LITMY++CG + +
Sbjct: 209 VGEIPDRHTFSSVLAACASIPMLGLGAQIHQLVEKS-FVPDTAISNALITMYSRCGALND 267

Query: 509 AELLFKDADPV-DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
           AE +FK      D++SWN+LI  Y  +G AT+A++LF+EM    V P  +TF+ +LSAC 
Sbjct: 268 AEAIFKQMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACV 327

Query: 568 HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIW 627
           + GLV  G  +F+ M   Y I   +EHYA +++L+ R G+LD+A E++  M + P+  +W
Sbjct: 328 NAGLVSEGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQLDDALEVINSMPMAPDRSVW 387

Query: 628 GTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGS 687
           G  LGAC   +N  L ++A ++LS + P  ++ Y L+ N+HA  G+W     VR  ME  
Sbjct: 388 GAFLGACTAKKNEPLAQMAAKELSTINPDSSAPYVLIHNLHAHEGKWGSAAVVREEMERQ 447

Query: 688 GAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLK 725
           G  KQPG SWI+++ ++H F+SGD       EI + L+
Sbjct: 448 GIYKQPGYSWIDLEGKMHVFISGDTWHPNAQEIFSVLE 485



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/425 (25%), Positives = 207/425 (48%), Gaps = 60/425 (14%)

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEK 126
           MP ++  S ++M++G+  N  + EA EL  K          + ++  +I  Y + G    
Sbjct: 1   MPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSD 60

Query: 127 ARELFDLLPN-------------KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS 173
           A+ LFD++P              + +   WN+M+  Y K G+   A+ L + MP K++VS
Sbjct: 61  AKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLVS 120

Query: 174 WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV 233
           WN+M+SGYT+  +M  + K F  M + D VSWNL++ G+++  + + A  FF ++PE+  
Sbjct: 121 WNTMISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGT 180

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           +SW TM+SGY +NG  + + +LF +M               ++ G+I          P+R
Sbjct: 181 ISWNTMISGYEKNGNYISSVKLFSKM---------------LEVGEI----------PDR 215

Query: 294 NPVSWTTMIDGYVRIAKLD---EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD 350
           +  ++++++     I  L    +  +L+++    + A   A+I+ Y +   +++A  IF 
Sbjct: 216 H--TFSSVLAACASIPMLGLGAQIHQLVEKSFVPDTAISNALITMYSRCGALNDAEAIFK 273

Query: 351 KIGT-HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI----VTWNTMIAGYAQIRQMD 405
           ++ T  D+V WN +I  Y   GR  +A+ LF++M    +    +T+ ++++       + 
Sbjct: 274 QMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAGLVS 333

Query: 406 DAVKIFEEMGKRRNTVS----WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
           +   +F+ M      V+    + AL++   ++    DAL++   M       D S     
Sbjct: 334 EGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQLDDALEVINSMPM---APDRSVWGAF 390

Query: 462 LSACA 466
           L AC 
Sbjct: 391 LGACT 395



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 126/481 (26%), Positives = 231/481 (48%), Gaps = 65/481 (13%)

Query: 22  ITQLGKSGRVEEAIKIFSQM-----SQKNTVTYNSMISAYAKNGRVNDARKLFEQMP--- 73
           ++   K+G + EA ++ ++        K    YN++I AY + GR +DA++LF+ +P   
Sbjct: 13  VSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQ 72

Query: 74  -----------QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKG 122
                      +RN+VSWNSM+  Y+    V  AR LF++M   DL SW  MI+ YT+  
Sbjct: 73  YQHNMLKRKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLVSWNTMISGYTQAS 132

Query: 123 ELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYT 182
           +++++ +LF  +P+  DT  WN ++ G+ + G    A+   D MP +  +SWN+M+SGY 
Sbjct: 133 DMKESEKLFWEMPDP-DTVSWNLIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYE 191

Query: 183 KNG----EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV- 237
           KNG     + L SK  E  E  D  +++ +L     +  L    +  Q + +  V     
Sbjct: 192 KNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIHQLVEKSFVPDTAI 251

Query: 238 --TMLSGYARNGRMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQIEEAARLFIEMPE-- 292
              +++ Y+R G + +A  +F QM   +++V+WNA+I  Y   G+  +A +LF EM    
Sbjct: 252 SNALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMRRAK 311

Query: 293 --RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK-----NIAAQTAMISGYVQNKRMDEA 345
                +++ +++   V    + E R + D M ++      I    A+++   ++ ++D+A
Sbjct: 312 VMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVNLIGRHGQLDDA 371

Query: 346 NQIFDKIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNT-MIAGYAQIRQ 403
            ++ + +    D   W   +   A   + +E +    QM  K++ T N    A Y  I  
Sbjct: 372 LEVINSMPMAPDRSVWGAFLG--ACTAKKNEPL---AQMAAKELSTINPDSSAPYVLIHN 426

Query: 404 MD-------DAVKIFEEMGK----RRNTVSW-------NALISGFLQNEFHLDALKIFVL 445
           +         A  + EEM +    ++   SW       +  ISG   + +H +A +IF +
Sbjct: 427 LHAHEGKWGSAAVVREEMERQGIYKQPGYSWIDLEGKMHVFISG---DTWHPNAQEIFSV 483

Query: 446 M 446
           +
Sbjct: 484 L 484



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 171/337 (50%), Gaps = 36/337 (10%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMS--------------QKNTVTYNSMISAYAKNGRVND 64
           N  I   G++GR  +A ++F  +               ++N V++NSM+  Y K G V  
Sbjct: 46  NTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVCS 105

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGEL 124
           AR LF +MP ++LVSWN+MI+GY     +KE+ +LF +M  PD  SW L+I  + +KGE 
Sbjct: 106 ARALFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGEA 165

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------PSKNIVSWNSML 178
           E AR  FD +P +  T  WN M++GY K GNY  + KL   M      P ++  S  S+L
Sbjct: 166 EHARGFFDRMPER-GTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFS--SVL 222

Query: 179 SGYTKNGEMHLASKFFEAMEER---DVVSWNLMLDGYVELDDLDSAWKFFQKI-PEQNVV 234
           +       + L ++  + +E+    D    N ++  Y     L+ A   F+++  ++++V
Sbjct: 223 AACASIPMLGLGAQIHQLVEKSFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLV 282

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEM 290
           SW  ++  Y  +GR  +A +LF +M    V    + + ++++A V  G + E   +F  M
Sbjct: 283 SWNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTM 342

Query: 291 PERNPV-----SWTTMIDGYVRIAKLDEARRLLDQMP 322
                +      +  +++   R  +LD+A  +++ MP
Sbjct: 343 VHEYGIVARIEHYAALVNLIGRHGQLDDALEVINSMP 379


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  348 bits (893), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 213/667 (31%), Positives = 352/667 (52%), Gaps = 65/667 (9%)

Query: 128 RELFDLLPNKEDTACWN------AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
           +EL+ +LP       +N       +++ + K G+ +EA ++ + +  K  V ++ ML GY
Sbjct: 61  KELYQILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGY 120

Query: 182 TKNGEMHLASKFFEAM---EERDVVS-WNLMLDGYVELDDLDSAWKFFQKIP----EQNV 233
            KN  +  A  FF  M   E R VV  +  +L    E  DL    +    I     E N+
Sbjct: 121 AKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNL 180

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE- 292
                ++S YA+  ++  A ++F++M  +++V+W  ++A Y Q G  + A +L ++M E 
Sbjct: 181 FVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEA 240

Query: 293 -RNPVSWTTMIDGYVRIAKLDEAR--RLLDQMPYKN-----IAAQTAMISGYVQNKRMDE 344
            + P S  T++     +A +   R  R +    +++     +    A++  Y +      
Sbjct: 241 GQKPDS-VTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARI 299

Query: 345 ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK------------------ 386
           A  +F  + +  VV WN MI G AQ G  +EA   F +M+++                  
Sbjct: 300 ARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACAN 359

Query: 387 ---------------------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
                                ++   N++I+ Y++ +++D A  IF  + K    V+WNA
Sbjct: 360 LGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEK--TNVTWNA 417

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485
           +I G+ QN    +AL +F +M  +G K D  TL   ++A A  +  +  + IH LA+++ 
Sbjct: 418 MILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRAC 477

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
             N++FV  +L+ MYAKCG I+ A  LF       VI+WN++I GY  +G   E + LF 
Sbjct: 478 MDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFN 537

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRA 605
           EM    V P+ +TF+ V+SACSH G V+ GL LF+ M E Y +EP ++HY+ M+DLL RA
Sbjct: 538 EMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRA 597

Query: 606 GRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLS 665
           G+LD+A+  ++ M IKP   + G +LGAC++H+N++LG  A +KL +L+P +   + LL+
Sbjct: 598 GQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLA 657

Query: 666 NMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLK 725
           N++A    WD+V KVR +ME  G  K PGCSW+E++N+IHTF SG      + +I   L+
Sbjct: 658 NIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEIHTFYSGSTNHPESKKIYAFLE 717

Query: 726 TLAAQIR 732
           TL  +I+
Sbjct: 718 TLGDEIK 724



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 146/584 (25%), Positives = 261/584 (44%), Gaps = 67/584 (11%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K GR    + I +   + N     +++S YAK  ++++A K+FE+M  ++LVSW +++AG
Sbjct: 162 KKGREIHGL-IITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAG 220

Query: 87  YLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKAREL--------FDLL 134
           Y  N   K A +L  +M     +PD  +   ++        L   R +        F+ L
Sbjct: 221 YAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESL 280

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA-SKF 193
            N       NA++  Y K G+   A+ +   M SK +VSWN+M+ G  +NGE   A + F
Sbjct: 281 VNVT-----NALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATF 335

Query: 194 FEAMEERDV---VSWNLMLDGYVELDDLDSAW---KFFQKIP-EQNVVSWVTMLSGYARN 246
            + ++E +V   V+   +L     L DL+  W   K   K+  + NV    +++S Y++ 
Sbjct: 336 LKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKC 395

Query: 247 GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN-PVSWTTMIDGY 305
            R+  A  +F+ +   N V WNAMI  Y Q G ++EA  LF  M  +   +   T++   
Sbjct: 396 KRVDIAASIFNNLEKTN-VTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVI 454

Query: 306 VRIAKLDEAR--RLLDQMPYK-----NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV 358
             +A     R  + +  +  +     N+   TA++  Y +   +  A ++FD +    V+
Sbjct: 455 TALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVI 514

Query: 359 CWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            WN MI GY   G   E ++LF +M    V  + +T+ ++I+  +    +++ + +F+ M
Sbjct: 515 TWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSM 574

Query: 415 GKR---RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAAL 471
            +      T+   + +   L     LD    F+   +   K   S L   L AC     +
Sbjct: 575 QEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFI--QEMPIKPGISVLGAMLGACKIHKNV 632

Query: 472 QLGRQIHHLAIK-----SGY---VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
           +LG +      K      GY   + +++  NS   M+ K  +++ A +  K        S
Sbjct: 633 ELGEKAAQKLFKLDPDEGGYHVLLANIYASNS---MWDKVAKVRTA-MEDKGLHKTPGCS 688

Query: 524 W----NSLIAGYAINGNATEAIKLF-------EEMVMEGVAPDP 556
           W    N +   Y+ + N  E+ K++       +E+   G  PDP
Sbjct: 689 WVELRNEIHTFYSGSTNHPESKKIYAFLETLGDEIKAAGYVPDP 732



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 123/498 (24%), Positives = 217/498 (43%), Gaps = 68/498 (13%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM--PQR 75
           Q K I+   K G   EA ++F  +  K  V Y+ M+  YAKN  + DA   F +M   + 
Sbjct: 82  QTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEV 141

Query: 76  NLV--SWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARE 129
            LV   +  ++     N  +K+ RE+   +    F  +LF    +++ Y +  +++ A +
Sbjct: 142 RLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYK 201

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM-------PSKNIVS--------- 173
           +F+ + +K D   W  +VAGYA+ G+   A +L+  M        S  +VS         
Sbjct: 202 MFERMQHK-DLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMK 260

Query: 174 -----------------------WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLD 210
                                   N++L  Y K G   +A   F+ M  + VVSWN M+D
Sbjct: 261 ALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMID 320

Query: 211 GYVELDDLDSAW-KFFQKIPEQNVVSWVTMLSGYARNGRMLEARR------LFDQMPI-R 262
           G  +  + + A+  F + + E  V + VTM+        + +  R      L D++ +  
Sbjct: 321 GCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDS 380

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
           NV   N++I+ Y +  +++ AA +F  + E+  V+W  MI GY +   + EA  L   M 
Sbjct: 381 NVSVMNSLISMYSKCKRVDIAASIFNNL-EKTNVTWNAMILGYAQNGCVKEALNLFCMMQ 439

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIG--------THDVVCWNVMIKGYAQCGRMD 374
            + I      + G +        N+    I          ++V     ++  YA+CG + 
Sbjct: 440 SQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIK 499

Query: 375 EAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK---RRNTVSWNALISGFL 431
            A  LF  M  + ++TWN MI GY       + + +F EM K   + N +++ ++IS   
Sbjct: 500 TARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACS 559

Query: 432 QNEFHLDALKIFVLMTQE 449
            + F  + L +F  M ++
Sbjct: 560 HSGFVEEGLLLFKSMQED 577



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 90/201 (44%), Gaps = 18/201 (8%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP- 73
           VF     +    K G ++ A K+F  M +++ +T+N+MI  Y  +G   +   LF +M  
Sbjct: 482 VFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQK 541

Query: 74  ---QRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELE 125
              + N +++ S+I+   H+  V+E   LF  M       P +  ++ M+    R G+L+
Sbjct: 542 GAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLD 601

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNE-----AKKLLDAMPSKNIVSWNSMLSG 180
            A      +P K   +   AM+ G  KI    E     A+KL    P +    ++ +L+ 
Sbjct: 602 DAWNFIQEMPIKPGISVLGAML-GACKIHKNVELGEKAAQKLFKLDPDEG--GYHVLLAN 658

Query: 181 -YTKNGEMHLASKFFEAMEER 200
            Y  N      +K   AME++
Sbjct: 659 IYASNSMWDKVAKVRTAMEDK 679


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  348 bits (893), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 181/514 (35%), Positives = 303/514 (58%), Gaps = 16/514 (3%)

Query: 228 IP--EQNVVSWVTMLSGYARNGRMLEARRLFDQ-MPIRNVVAWNAMIAAYVQRGQIEEAA 284
           IP  + N+++ V  +   + +G +  +  +F+  +   N+ A+NA++ A+ Q        
Sbjct: 52  IPSIDPNIIA-VKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTI 110

Query: 285 RLF------IEMPERNPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMIS 334
             F         P  +  ++T+++     +A++ E +++           N+  + +++ 
Sbjct: 111 SYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVD 170

Query: 335 GYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTM 394
            Y +      A ++FD++   DVV WN +I GY   G +D+A  +F  M+ K++V+W+TM
Sbjct: 171 LYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTM 230

Query: 395 IAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
           I+GYA++  +++A ++FE M   RN VSWNA+I+G+ QNE + DA+++F  M  EG  A 
Sbjct: 231 ISGYARVGNLEEARQLFENM-PMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAP 289

Query: 455 HS-TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
           +  TL   LSACAHL AL LG+ IH    ++     LF+GN+L  MYAKCG +  A+ +F
Sbjct: 290 NDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVF 349

Query: 514 KDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVD 573
            +    DVISW+ +I G A+ G A EA   F EM+ +G+ P+ ++F+G+L+AC+H GLVD
Sbjct: 350 HEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVD 409

Query: 574 GGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
            GL+ F+ M +VY I P +EHY C++DLLSRAGRLD+A  ++  M ++PN  +WG LLG 
Sbjct: 410 KGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGG 469

Query: 634 CRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQP 693
           CR++++ + G   V ++ EL+   +     L+N++A  GR D+    R+ M  + + K P
Sbjct: 470 CRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTP 529

Query: 694 GCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
           GCSWIE+ N ++ F  GD    ++  I + ++ L
Sbjct: 530 GCSWIEINNSVYEFFMGDSSHPQSLRIYSMIREL 563



 Score =  142 bits (359), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 119/451 (26%), Positives = 203/451 (45%), Gaps = 81/451 (17%)

Query: 106 PDLFSWALMITCYTRKGELEKARELFD---LLPN--KEDTACWNAMVAGYAKIGNYNEAK 160
           P++F++  ++  +++          F+   +LPN    D   + +++   A +    E +
Sbjct: 88  PNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQ 147

Query: 161 KLLDAMP----SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELD 216
           K+   +       N+   NS++  Y K G   +A K F+ M  RDVVSWN ++ GY    
Sbjct: 148 KVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSG 207

Query: 217 DLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ 276
            +D A   F  + E+N+VSW TM+SGYAR G + EAR+LF+ MP+RNVV+WNAMIA Y Q
Sbjct: 208 MVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQ 267

Query: 277 RGQIEEAARLFIEMPER-----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
             +  +A  LF +M        N V+  +++     +  LD  +                
Sbjct: 268 NEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGK---------------- 311

Query: 332 MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTW 391
            I  +++  +++        +G   +   N +   YA+CG + EA  +F +M  +D+++W
Sbjct: 312 WIHRFIRRNKIE--------VG---LFLGNALADMYAKCGCVLEAKGVFHEMHERDVISW 360

Query: 392 NTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
           + +I G A     ++A   F EM   G   N +S+  L++           L+ F +M Q
Sbjct: 361 SIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQ 420

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
                                   +  +I H     G V DL          ++ GR+  
Sbjct: 421 ---------------------VYGITPKIEHY----GCVVDLL---------SRAGRLDQ 446

Query: 509 AELLFKDADPV--DVISWNSLIAGYAINGNA 537
           AE L  ++ P+  +VI W +L+ G  I  +A
Sbjct: 447 AESLI-NSMPMQPNVIVWGALLGGCRIYKDA 476



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 112/378 (29%), Positives = 186/378 (49%), Gaps = 38/378 (10%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           + N    NS++  Y K G    A+KLF++M  R++VSWN++I+GY  +  V +AR +FD 
Sbjct: 159 ESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDG 218

Query: 103 MFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKL 162
           M   +L SW+ MI+ Y R G LE+AR+LF+ +P + +   WNAM+AGYA+   Y +A +L
Sbjct: 219 MMEKNLVSWSTMISGYARVGNLEEARQLFENMPMR-NVVSWNAMIAGYAQNEKYADAIEL 277

Query: 163 LDAMP-----SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML-----DGY 212
              M      + N V+  S+LS     G + L  K+      R+ +   L L     D Y
Sbjct: 278 FRQMQHEGGLAPNDVTLVSVLSACAHLGALDLG-KWIHRFIRRNKIEVGLFLGNALADMY 336

Query: 213 VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM------PIRNVVA 266
            +   +  A   F ++ E++V+SW  ++ G A  G   EA   F +M      P  N ++
Sbjct: 337 AKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEP--NDIS 394

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQM 321
           +  ++ A    G +++    F  MP+   ++     +  ++D   R  +LD+A  L++ M
Sbjct: 395 FMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSM 454

Query: 322 PYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHD-------VVCWNVMIKGYAQCGRM 373
           P + N+    A++ G    K  +   ++  +I   D       V   NV    YA  GR+
Sbjct: 455 PMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANV----YASMGRL 510

Query: 374 DEAINL-FRQMVNKDIVT 390
           D+A +   R   NK + T
Sbjct: 511 DDAASCRLRMRDNKSMKT 528



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 162/321 (50%), Gaps = 21/321 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  I+    SG V++A  +F  M +KN V++++MIS YA+ G + +AR+LFE MP 
Sbjct: 193 VVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPM 252

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARE 129
           RN+VSWN+MIAGY  N+K  +A ELF +M       P+  +   +++     G L+  + 
Sbjct: 253 RNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKW 312

Query: 130 LFDLL-PNKEDTACW--NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           +   +  NK +   +  NA+   YAK G   EAK +   M  ++++SW+ ++ G    G 
Sbjct: 313 IHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGY 372

Query: 187 MHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPE-----QNVVSWV 237
            + A  FF  M E  +    +S+  +L        +D   ++F  +P+       +  + 
Sbjct: 373 ANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYG 432

Query: 238 TMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARL---FIEMPER 293
            ++   +R GR+ +A  L + MP++ NV+ W A++         E   R+    +E+   
Sbjct: 433 CVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSN 492

Query: 294 NPVSWTTMIDGYVRIAKLDEA 314
           +  S   + + Y  + +LD+A
Sbjct: 493 HSGSLVYLANVYASMGRLDDA 513


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  348 bits (893), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 178/477 (37%), Positives = 290/477 (60%), Gaps = 37/477 (7%)

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEM------PERNPVSWTTMIDGYVRIAKLDEARR 316
           NV +WN++IA   + G   EA R F  M      P R+  ++   I     +  L   R+
Sbjct: 40  NVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRS--TFPCAIKSCSALLDLHSGRQ 97

Query: 317 LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
                     A Q A+I G+                   D+   + ++  Y++CG + +A
Sbjct: 98  ----------AHQQALIFGF-----------------EPDLFVSSALVDMYSKCGELRDA 130

Query: 377 INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
             LF ++ +++IV+W +MI GY Q      A+++F+ M +R + +SWN++I+ + QN   
Sbjct: 131 RTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAER-DVISWNSIIAVYAQNGMS 189

Query: 437 LDALKIFVLMTQEGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS 495
            ++++IF  M ++G+   +  TL+  L ACAH  + +LG+ IH   IK G  +++FVG S
Sbjct: 190 TESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTS 249

Query: 496 LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555
           +I MY KCG+++ A   F      +V SW++++AGY ++G+A EA+++F EM M GV P+
Sbjct: 250 IIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPN 309

Query: 556 PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV 615
            +TF+ VL+ACSH GL++ G   F+ M+  + +EP VEHY CM+DLL RAG L EAF+++
Sbjct: 310 YITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLI 369

Query: 616 KGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWD 675
           KGMK++P+  +WG LLGACRMH+N+ LG I+  KL EL+P+    Y LLSN++A+AGRW+
Sbjct: 370 KGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWE 429

Query: 676 EVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +VE++R+ M+ SG  K PG S +++K ++H FL GD +  +  +I   L+ L+ +++
Sbjct: 430 DVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQ 486



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 174/383 (45%), Gaps = 69/383 (18%)

Query: 224 FFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM------PIRN-----VVAWNAMIA 272
           F + + + NV SW ++++  AR+G  +EA R F  M      P R+     + + +A++ 
Sbjct: 32  FNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLD 91

Query: 273 AYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAM 332
            +  R Q  + A +F   P+    S   ++D Y +  +L +AR L D++ ++NI + T+M
Sbjct: 92  LHSGR-QAHQQALIFGFEPDLFVSS--ALVDMYSKCGELRDARTLFDEISHRNIVSWTSM 148

Query: 333 ISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWN 392
           I+GYVQN     A ++FD +   DV+ WN +I  YAQ G   E++ +F +MV    + +N
Sbjct: 149 ITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYN 208

Query: 393 ----------------------------------------TMIAGYAQIRQMDDAVKIFE 412
                                                   ++I  Y +  +++ A K F+
Sbjct: 209 AVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFD 268

Query: 413 EMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQ 472
            M + +N  SW+A+++G+  +    +AL++F  M   G K ++ T    L+AC+H   L+
Sbjct: 269 RM-REKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLE 327

Query: 473 LG-----RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD-PVDVISWNS 526
            G        H   ++ G  +       ++ +  + G ++ A  L K      D + W +
Sbjct: 328 EGWHWFKAMSHEFDVEPGVEH----YGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGA 383

Query: 527 LIAGYAINGNA----TEAIKLFE 545
           L+    ++ N       A KLFE
Sbjct: 384 LLGACRMHKNVDLGEISARKLFE 406



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/421 (23%), Positives = 182/421 (43%), Gaps = 78/421 (18%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQ----KNTVTYNSMISAYAKNGRVNDARKLFE 70
           VF+ N  I +L +SG   EA++ FS M +     N  T+   I + +    ++  R+  +
Sbjct: 41  VFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAHQ 100

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
           Q          ++I G                 F PDLF  + ++  Y++ GEL  AR L
Sbjct: 101 Q----------ALIFG-----------------FEPDLFVSSALVDMYSKCGELRDARTL 133

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           FD + ++ +   W +M+ GY +  + + A ++ D M  ++++SWNS+++ Y +NG    +
Sbjct: 134 FDEISHR-NIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTES 192

Query: 191 SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP---------EQNVVSWVTMLS 241
            + F  M +   +++N +    V L    S  +   K           E NV    +++ 
Sbjct: 193 MEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIID 252

Query: 242 GYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVS 297
            Y + G++  AR+ FD+M  +NV +W+AM+A Y   G  +EA  +F EM     + N ++
Sbjct: 253 MYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYIT 312

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD-KIGTHD 356
           + +++        L+E       M ++                        FD + G   
Sbjct: 313 FVSVLAACSHAGLLEEGWHWFKAMSHE------------------------FDVEPGVEH 348

Query: 357 VVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAGYAQIRQMD----DAVKIF 411
             C   M+    + G + EA +L + M +  D V W  ++      + +D     A K+F
Sbjct: 349 YGC---MVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLF 405

Query: 412 E 412
           E
Sbjct: 406 E 406



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 130/267 (48%), Gaps = 40/267 (14%)

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           +F +   + N  SWN++I+   ++   ++AL+ F  M +   K + ST  CA+ +C+ L 
Sbjct: 31  LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 90

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
            L  GRQ H  A+  G+  DLFV ++L+ MY+KCG +++A  LF +    +++SW S+I 
Sbjct: 91  DLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMIT 150

Query: 530 G-------------------------------YAINGNATEAIKLFEEMVMEG-VAPDPV 557
           G                               YA NG +TE++++F  MV +G +  + V
Sbjct: 151 GYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAV 210

Query: 558 TFIGVLSACSHVGLVDGGLKLFECMTEVY---AIEPLVEHYACMIDLLSRAGRLDEAFEM 614
           T   VL AC+H     G  +L +C+ +      +E  V     +ID+  + G+++ A + 
Sbjct: 211 TLSAVLLACAH----SGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKA 266

Query: 615 VKGMKIKPNAGIWGTLLGACRMHQNIK 641
              M+ K N   W  ++    MH + K
Sbjct: 267 FDRMREK-NVKSWSAMVAGYGMHGHAK 292



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 159/330 (48%), Gaps = 30/330 (9%)

Query: 109 FSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM-- 166
           FSW +    Y+    L     LF+   +K +   WN+++A  A+ G+  EA +   +M  
Sbjct: 13  FSWKIYRRRYSNNPNLTT---LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRK 69

Query: 167 ----PSKN-----IVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDD 217
               P+++     I S +++L  ++   + H  +  F    E D+   + ++D Y +  +
Sbjct: 70  LSLKPNRSTFPCAIKSCSALLDLHSGR-QAHQQALIFGF--EPDLFVSSALVDMYSKCGE 126

Query: 218 LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR 277
           L  A   F +I  +N+VSW +M++GY +N     A R+FD M  R+V++WN++IA Y Q 
Sbjct: 127 LRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQN 186

Query: 278 GQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY---------KNIAA 328
           G   E+  +F  M +   +++  +    V +A      + L +  +          N+  
Sbjct: 187 GMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFV 246

Query: 329 QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----V 384
            T++I  Y +  +++ A + FD++   +V  W+ M+ GY   G   EA+ +F +M    V
Sbjct: 247 GTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGV 306

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
             + +T+ +++A  +    +++    F+ M
Sbjct: 307 KPNYITFVSVLAACSHAGLLEEGWHWFKAM 336



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 151/325 (46%), Gaps = 23/325 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F  +  +    K G + +A  +F ++S +N V++ SMI+ Y +N   + A ++F+ M +
Sbjct: 111 LFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAE 170

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSW------ALMITCYTRKGELEKAR 128
           R+++SWNS+IA Y  N    E+ E+F +M +    ++      A+++ C    G     +
Sbjct: 171 RDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLAC-AHSGSQRLGK 229

Query: 129 ELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
            + D +     + +     +++  Y K G    A+K  D M  KN+ SW++M++GY  +G
Sbjct: 230 CIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHG 289

Query: 186 EMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-----EQNVVSW 236
               A + F  M     + + +++  +L        L+  W +F+ +      E  V  +
Sbjct: 290 HAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHY 349

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPE 292
             M+    R G + EA  L   M +R + V W A++ A      +   E +AR   E+  
Sbjct: 350 GCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDP 409

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRL 317
           +N   +  + + Y    + ++  R+
Sbjct: 410 KNCGYYVLLSNIYADAGRWEDVERM 434



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 13/168 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S VF     I    K G+VE A K F +M +KN  ++++M++ Y  +G   +A ++F +M
Sbjct: 242 SNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEM 301

Query: 73  ----PQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGE 123
                + N +++ S++A   H   ++E    F  M       P +  +  M+    R G 
Sbjct: 302 NMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGY 361

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYN----EAKKLLDAMP 167
           L++A +L   +  + D   W A++       N +     A+KL +  P
Sbjct: 362 LKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDP 409


>gi|280967731|gb|ACZ98537.1| PPR motif protein [Malus x domestica]
          Length = 751

 Score =  348 bits (893), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 222/697 (31%), Positives = 365/697 (52%), Gaps = 49/697 (7%)

Query: 83  MIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD---------- 132
           ++  Y   D  + +  LF ++   ++FSWA +I    RKG  ++A   F           
Sbjct: 53  LVIFYAKCDNPEASNSLFRRVRLKNVFSWAAVIGLNCRKGFYQEALLGFKEMQENGLLPD 112

Query: 133 --LLPNKEDTAC----W-------NAMVA-GYA-KIGNYNEAKKLLDAMPSKNIVSWNSM 177
             +LPN    AC    W       + +V+ GY  K+      KK +  MP +N V+WNSM
Sbjct: 113 NFVLPNVLK-ACGGLEWIRIGKVVHGLVSCGYVWKMWGGGGCKKGVCGMPQRNAVAWNSM 171

Query: 178 LSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV 237
           + GY +NG    A + F  M E  V    + L  ++       A +  ++     V+  +
Sbjct: 172 IVGYVQNGLNEEAIEVFYEMREEGVEPTQVTLSSFLSASANLGALQDGKQGHAIAVICGI 231

Query: 238 TMLSG--------YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF-- 287
            M +         Y++ G + +A  +F +M  ++VV WN +I+ YVQ G++++A  +   
Sbjct: 232 EMTTNLGSSLINFYSKVGLIEDAESVFSRMLEKDVVTWNLLISGYVQIGEVDKALNMCHL 291

Query: 288 --IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG----YVQNKR 341
             +E    + V+  T++  +  +  L   +         N+ +   ++S     Y + ++
Sbjct: 292 MRLENLRFDSVTLATLMSAFADMRNLKLGKEGHCYCIRNNLESDVVVVSSIVDMYAKCEK 351

Query: 342 MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAG 397
           +  A ++F+   T D++ WN M+  +A+ G   EA+NLF QM    V  ++++WN++I G
Sbjct: 352 IGCARRVFNSSITKDLILWNTMLAAFAELGHSGEALNLFYQMQLESVPPNVISWNSLILG 411

Query: 398 YAQIRQMDDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
           +    Q+++A  +F +M   G + N V+W  LISG  ++ F  +A+  F  M + G K +
Sbjct: 412 FLNSGQVNEAKDMFLQMQSLGVQPNLVTWTTLISGLARSGFGYEAILTFQRMQEAGVKPN 471

Query: 455 HSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
             ++   L AC +LA+LQ+GR +H   I+      + +  SL+ MYAKCG    A+ +F 
Sbjct: 472 VVSIIGVLLACINLASLQIGRALHGYLIRHSLYLSIPIATSLVDMYAKCGDRDQAKRVFD 531

Query: 515 DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574
                ++  +N++I+G+A++G A EA+ L+  +  EG+ PD +TF   L ACSH  +V  
Sbjct: 532 MIPDKELPIYNAMISGFALHGQAVEALALYRCLKEEGLKPDNITFTNALYACSHAMMVSE 591

Query: 575 GLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGAC 634
           GL+LF  M   + I P +EHY CM+ LLSR G LDEAF ++  M  KP+  I G+LL AC
Sbjct: 592 GLELFVDMVSNHNINPSIEHYGCMVSLLSRCGDLDEAFGLISAMPYKPDVQILGSLLAAC 651

Query: 635 RMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPG 694
           R H  I+L      +L +L+P  +  Y  +SN +A AGRWDEV+KVR  M+  G +K PG
Sbjct: 652 REHNKIELEEYLSNQLLKLQPDNSGNYVAMSNAYAAAGRWDEVKKVRQLMKERGLRKIPG 711

Query: 695 CSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           CSWI+V  +++ F++GD     T EI  TL  L  +I
Sbjct: 712 CSWIQVGEELNVFVAGDKSHPETEEIYTTLALLLMEI 748



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 114/501 (22%), Positives = 220/501 (43%), Gaps = 95/501 (18%)

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKA 127
           MPQRN V+WNSMI GY+ N   +EA E+F +M      P   + +  ++     G L+  
Sbjct: 160 MPQRNAVAWNSMIVGYVQNGLNEEAIEVFYEMREEGVEPTQVTLSSFLSASANLGALQDG 219

Query: 128 RE---LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
           ++   +  +   +  T   ++++  Y+K+G   +A+ +   M  K++V+WN ++SGY + 
Sbjct: 220 KQGHAIAVICGIEMTTNLGSSLINFYSKVGLIEDAESVFSRMLEKDVVTWNLLISGYVQI 279

Query: 185 GE----------MHLASKFFEAMEERDVVSW-----NLMLDG------------------ 211
           GE          M L +  F+++    ++S      NL L                    
Sbjct: 280 GEVDKALNMCHLMRLENLRFDSVTLATLMSAFADMRNLKLGKEGHCYCIRNNLESDVVVV 339

Query: 212 ------YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR--- 262
                 Y + + +  A + F     ++++ W TML+ +A  G   EA  LF QM +    
Sbjct: 340 SSIVDMYAKCEKIGCARRVFNSSITKDLILWNTMLAAFAELGHSGEALNLFYQMQLESVP 399

Query: 263 -NVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEA--- 314
            NV++WN++I  ++  GQ+ EA  +F++M     + N V+WTT+I G  R     EA   
Sbjct: 400 PNVISWNSLILGFLNSGQVNEAKDMFLQMQSLGVQPNLVTWTTLISGLARSGFGYEAILT 459

Query: 315 -RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQ 369
            +R+ +     N+ +   ++   +    +     +   +  H     +     ++  YA+
Sbjct: 460 FQRMQEAGVKPNVVSIIGVLLACINLASLQIGRALHGYLIRHSLYLSIPIATSLVDMYAK 519

Query: 370 CGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
           CG  D+A  +F  + +K++  +N MI+G+A   Q                          
Sbjct: 520 CGDRDQAKRVFDMIPDKELPIYNAMISGFALHGQA------------------------- 554

Query: 430 FLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN- 488
                  ++AL ++  + +EG K D+ T   AL AC+H   +  G ++    + +  +N 
Sbjct: 555 -------VEALALYRCLKEEGLKPDNITFTNALYACSHAMMVSEGLELFVDMVSNHNINP 607

Query: 489 DLFVGNSLITMYAKCGRIQNA 509
            +     ++++ ++CG +  A
Sbjct: 608 SIEHYGCMVSLLSRCGDLDEA 628



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/435 (22%), Positives = 205/435 (47%), Gaps = 35/435 (8%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           + G+   AI +   +     +  +S+I+ Y+K G + DA  +F +M ++++V+WN +I+G
Sbjct: 217 QDGKQGHAIAVICGIEMTTNLG-SSLINFYSKVGLIEDAESVFSRMLEKDVVTWNLLISG 275

Query: 87  YLHNDKVKEARELFDKM----FRPDLFSWALMITCYT--RKGELEKARELFDLLPNKEDT 140
           Y+   +V +A  +   M     R D  + A +++ +   R  +L K    + +  N E  
Sbjct: 276 YVQIGEVDKALNMCHLMRLENLRFDSVTLATLMSAFADMRNLKLGKEGHCYCIRNNLESD 335

Query: 141 ACWNAMVAG-YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME- 198
               + +   YAK      A+++ ++  +K+++ WN+ML+ + + G    A   F  M+ 
Sbjct: 336 VVVVSSIVDMYAKCEKIGCARRVFNSSITKDLILWNTMLAAFAELGHSGEALNLFYQMQL 395

Query: 199 ---ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLE 251
                +V+SWN ++ G++    ++ A   F ++     + N+V+W T++SG AR+G   E
Sbjct: 396 ESVPPNVISWNSLILGFLNSGQVNEAKDMFLQMQSLGVQPNLVTWTTLISGLARSGFGYE 455

Query: 252 ARRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN-----PVSWTTMI 302
           A   F +M       NVV+   ++ A +    ++    L   +   +     P++ T+++
Sbjct: 456 AILTFQRMQEAGVKPNVVSIIGVLLACINLASLQIGRALHGYLIRHSLYLSIPIA-TSLV 514

Query: 303 DGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH----DVV 358
           D Y +    D+A+R+ D +P K +    AMISG+  + +  EA  ++  +       D +
Sbjct: 515 DMYAKCGDRDQAKRVFDMIPDKELPIYNAMISGFALHGQAVEALALYRCLKEEGLKPDNI 574

Query: 359 CWNVMIKGYAQCGRMDEAINLFRQMV-----NKDIVTWNTMIAGYAQIRQMDDAVKIFEE 413
            +   +   +    + E + LF  MV     N  I  +  M++  ++   +D+A  +   
Sbjct: 575 TFTNALYACSHAMMVSEGLELFVDMVSNHNINPSIEHYGCMVSLLSRCGDLDEAFGLISA 634

Query: 414 MGKRRNTVSWNALIS 428
           M  + +     +L++
Sbjct: 635 MPYKPDVQILGSLLA 649



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 2/107 (1%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSG--YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
           L  C +  AL  GRQIH   +K G  +  + ++   L+  YAKC   + +  LF+     
Sbjct: 17  LQGCVYERALHTGRQIHAQIVKKGAIFAMNEYIETKLVIFYAKCDNPEASNSLFRRVRLK 76

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
           +V SW ++I      G   EA+  F+EM   G+ PD      VL AC
Sbjct: 77  NVFSWAAVIGLNCRKGFYQEALLGFKEMQENGLLPDNFVLPNVLKAC 123


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 223/715 (31%), Positives = 363/715 (50%), Gaps = 88/715 (12%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF----DKMFR 105
           N++++ Y K G      K+F+++ +RN VSWNS+I+     +K + A E F    D+   
Sbjct: 137 NTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVE 196

Query: 106 PDLFSWALMITCYTRKGELE-----KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
           P  F+   ++T  +     E     K    + L   + ++   N +VA Y K+G    +K
Sbjct: 197 PSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSK 256

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSWNLMLDGYVELD 216
            LL +   +++V+WN++LS   +N ++  A ++   M     E D  + + +L     L+
Sbjct: 257 VLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLE 316

Query: 217 DLDS-----AWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
            L +     A+       ++N      ++  Y    ++L  RR+FD M  R +  WNAMI
Sbjct: 317 MLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMI 376

Query: 272 AAYVQRGQIEEAARLFIEMPER-----NPVSWTTMIDGYVRIAKLDE--------ARRLL 318
           A Y Q    +EA  LFI M E      N  +   ++   VR               +R L
Sbjct: 377 AGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGL 436

Query: 319 DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
           D+  +     Q  ++  Y +  ++D A +IF K+   D+V WN MI GY      ++A+ 
Sbjct: 437 DRDRF----VQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALL 492

Query: 379 LFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
           L  +M N +              R++          G  R ++  N++            
Sbjct: 493 LLHKMQNLE--------------RKVSK--------GASRVSLKPNSI------------ 518

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
                             TL   L +CA L+AL  G++IH  AIK+    D+ VG++L+ 
Sbjct: 519 ------------------TLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVD 560

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           MYAKCG +Q +  +F      +VI+WN +I  Y ++GN  EAI L   M+++GV P+ VT
Sbjct: 561 MYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVT 620

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
           FI V +ACSH G+VD GL++F  M   Y +EP  +HYAC++DLL RAGR+ EA++++  M
Sbjct: 621 FISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMM 680

Query: 619 KIKPN-AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEV 677
               N AG W +LLGA R+H N+++G IA + L +LEP   S Y LL+N+++ AG WD+ 
Sbjct: 681 PRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKA 740

Query: 678 EKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            +VR +M+  G +K+PGCSWIE  +++H F++GD    ++ ++   L+TL  ++R
Sbjct: 741 TEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMR 795



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 180/405 (44%), Gaps = 44/405 (10%)

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
           + +V   N ++  Y + G      ++F  + ERN VSW ++I       K + A      
Sbjct: 130 VDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRC 189

Query: 321 MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF 380
           M  +N+   +  +   V                     C N+ +      G+   A  L 
Sbjct: 190 MLDENVEPSSFTLVSVV-------------------TACSNLPMPEGLMMGKQVHAYGLR 230

Query: 381 RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
           +  +N  I+  NT++A Y ++ ++  +  +    G R + V+WN ++S   QNE  L+AL
Sbjct: 231 KGELNSFII--NTLVAMYGKLGKLASSKVLLGSFGGR-DLVTWNTVLSSLCQNEQLLEAL 287

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND-LFVGNSLITM 499
           +    M  EG + D  T++  L AC+HL  L+ G+++H  A+K+G +++  FVG++L+ M
Sbjct: 288 EYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDM 347

Query: 500 YAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME-GVAPDPVT 558
           Y  C ++ +   +F       +  WN++IAGY+ N +  EA+ LF  M    G+  +  T
Sbjct: 348 YCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTT 407

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYA---------CMIDLLSRAGRLD 609
             GV+ AC   G            +   AI   V              ++D+ SR G++D
Sbjct: 408 MAGVVPACVRSG----------AFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKID 457

Query: 610 EAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE 654
            A  +   M+ + +   W T++      ++ +   + + K+  LE
Sbjct: 458 IAMRIFGKMEDR-DLVTWNTMITGYVFSEHHEDALLLLHKMQNLE 501



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/426 (22%), Positives = 188/426 (44%), Gaps = 72/426 (16%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           N+   N++++ Y K G++  ++ L      R+LV+WN++++    N+++ EA E   +M 
Sbjct: 235 NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMV 294

Query: 104 ---FRPDLFSWALMITCYTRKGELEKARELFDL-LPN---KEDTACWNAMVAGYAKIGNY 156
                PD F+ + ++   +    L   +EL    L N    E++   +A+V  Y      
Sbjct: 295 LEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQV 354

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE----------------- 199
              +++ D M  + I  WN+M++GY++N     A   F  MEE                 
Sbjct: 355 LSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA 414

Query: 200 -----------------------RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSW 236
                                  RD    N ++D Y  L  +D A + F K+ ++++V+W
Sbjct: 415 CVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTW 474

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
            TM++GY  +    +A  L  +M               ++R   + A+R+ +   + N +
Sbjct: 475 NTMITGYVFSEHHEDALLLLHKM-------------QNLERKVSKGASRVSL---KPNSI 518

Query: 297 SWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
           +  T++     ++ L + + +    +      ++A  +A++  Y +   +  + ++FD+I
Sbjct: 519 TLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQI 578

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAV 408
              +V+ WNV+I  Y   G   EAI+L R M    V  + VT+ ++ A  +    +D+ +
Sbjct: 579 PQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGL 638

Query: 409 KIFEEM 414
           +IF  M
Sbjct: 639 RIFYVM 644



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 144/326 (44%), Gaps = 31/326 (9%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           ++G+   A  + +    +N+   ++++  Y    +V   R++F+ M  R +  WN+MIAG
Sbjct: 319 RTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAG 378

Query: 87  YLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFDLLPNK---E 138
           Y  N+  KEA  LF  M        +  + A ++    R G   +   +   +  +    
Sbjct: 379 YSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDR 438

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           D    N ++  Y+++G  + A ++   M  +++V+WN+M++GY  +     A      M+
Sbjct: 439 DRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQ 498

Query: 199 --ERDV-------------VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG- 242
             ER V             ++   +L     L  L    +      + N+ + V + S  
Sbjct: 499 NLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSAL 558

Query: 243 ---YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF----IEMPERNP 295
              YA+ G +  +R++FDQ+P +NV+ WN +I AY   G  +EA  L     ++  + N 
Sbjct: 559 VDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNE 618

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQM 321
           V++ ++         +DE  R+   M
Sbjct: 619 VTFISVFAACSHSGMVDEGLRIFYVM 644



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 3/169 (1%)

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
           A  IF  + + R+   W  L+   +++    +A+  +V M   G K D+      L A A
Sbjct: 51  APSIF--ISQSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVA 108

Query: 467 HLAALQLGRQIHHLAIKSGY-VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
            L  ++LG+QIH    K GY V+ + V N+L+ +Y KCG       +F      + +SWN
Sbjct: 109 DLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWN 168

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574
           SLI+          A++ F  M+ E V P   T + V++ACS++ + +G
Sbjct: 169 SLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEG 217


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  348 bits (892), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 215/652 (32%), Positives = 334/652 (51%), Gaps = 43/652 (6%)

Query: 121 KGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA------KKLLDAMPSKNIVSW 174
            G L +A  LFD +P+  D   +N ++  Y+       A      +++L    + N  ++
Sbjct: 70  SGHLSRAHHLFDQIPS-PDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTF 128

Query: 175 NSMLSGYTKNGEMHLASKF----FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPE 230
              L   +   + H           A  + D+     +LD YV+   L  A   F  +P 
Sbjct: 129 PFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPA 188

Query: 231 QNVVSWVTMLSGYARNGRMLEA--RRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAA 284
           +++V+W  ML+GYA +G    A    L  QM +     N     A++    Q+G + +  
Sbjct: 189 RDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGT 248

Query: 285 RLFIE------MPERNPVS--------WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT 330
            +            RN  S         T ++D Y +   L  ARR+ D MP +N    +
Sbjct: 249 SVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWS 308

Query: 331 AMISGYVQNKRMDEANQIFDKIGTHDVVCW---NVMIKGYAQCG-----RMDEAIN--LF 380
           A+I G+V   RM +A  +F  +    + C+     +      C      RM E ++  L 
Sbjct: 309 ALIGGFVLCSRMTQAFLLFKAMLAQGL-CFLSPTSIASALRACASLDHLRMGEQLHALLA 367

Query: 381 RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
           +  V+ D+   N++++ YA+   +D A+ +F+EM  + +TVS++AL+SG++QN    +A 
Sbjct: 368 KSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYSALVSGYVQNGRAEEAF 426

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500
            +F  M     + D +T+   + AC+HLAALQ GR  H   I  G  ++  + N+LI MY
Sbjct: 427 LVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMY 486

Query: 501 AKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
           AKCGRI  +  +F      D++SWN++IAGY I+G   EA  LF EM   G  PD VTFI
Sbjct: 487 AKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFI 546

Query: 561 GVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKI 620
            +LSACSH GLV  G   F  M   Y + P +EHY CM+DLLSR G LDEA+E ++ M +
Sbjct: 547 CLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPL 606

Query: 621 KPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKV 680
           + +  +W  LLGACR+++NI LG+     + EL P+ T  + LLSN+++ AGR+DE  +V
Sbjct: 607 RADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEV 666

Query: 681 RVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           R+  +  G +K PGCSWIE+   +H F+ GD    ++ EI   L  +   I+
Sbjct: 667 RIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIK 718



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 153/680 (22%), Positives = 271/680 (39%), Gaps = 153/680 (22%)

Query: 28  SGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRV--NDARKLFEQMPQRNLVSWNSMIA 85
           SG +  A  +F Q+   +  TYN +I AY+ +      D   L+ +M +  +   N    
Sbjct: 70  SGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFP 129

Query: 86  GYL--------HNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
             L        H+      R       + DLF    ++  Y +   L  A  +F  +P +
Sbjct: 130 FALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 138 EDTACWNAMVAGYAKIGNYNE------------------AKKLLDAMP------------ 167
            D   WNAM+AGYA  G Y+                   A  L+  +P            
Sbjct: 190 -DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGT 248

Query: 168 ---------------------SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN 206
                                +  ++   ++L  Y K G +  A + F+AM  R+ V+W+
Sbjct: 249 SVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWS 308

Query: 207 LMLDGYVELDDLDSAWKFFQKIPEQNVVSWV-TMLSGYARNGRMLEARRLFDQMPI---- 261
            ++ G+V    +  A+  F+ +  Q +     T ++   R    L+  R+ +Q+      
Sbjct: 309 ALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAK 368

Query: 262 ----RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL 317
                ++ A N++++ Y + G I++A  LF EM  ++ VS++ ++ GYV+  + +EA  +
Sbjct: 369 SGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLV 428

Query: 318 LDQMPYKNIAAQTA-MIS--------GYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
             +M   N+    A M+S          +Q+ R    + I   + +   +C N +I  YA
Sbjct: 429 FKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSIC-NALIDMYA 487

Query: 369 QCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
           +CGR+D +  +F  M ++DIV+WNTMIAGY               +GK            
Sbjct: 488 KCGRIDLSRQVFNMMPSRDIVSWNTMIAGYG-----------IHGLGK------------ 524

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
                    +A  +F+ M   G   D  T  C LSAC+H   +  G+   H+ ++ G   
Sbjct: 525 ---------EATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHV-MRHG--- 571

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
                      Y    R+++   +      VD++S    +          EA +  + M 
Sbjct: 572 -----------YGLTPRMEHYICM------VDLLSRGGFL---------DEAYEFIQSMP 605

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
           +     D   ++ +L AC     +D G K+   + E+        ++  + ++ S AGR 
Sbjct: 606 LRA---DVRVWVALLGACRVYKNIDLGKKVSRMIQELG--PEGTGNFVLLSNIYSAAGRF 660

Query: 609 DEAFEM-----VKGMKIKPN 623
           DEA E+     V+G K  P 
Sbjct: 661 DEAAEVRIIQKVQGFKKSPG 680



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 102/471 (21%), Positives = 187/471 (39%), Gaps = 95/471 (20%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVN------------------DARKL 68
           K   + +A  IF+ M  ++ V +N+M++ YA +G  +                  +A  L
Sbjct: 172 KCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTL 231

Query: 69  FEQMP---QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELE 125
              +P   Q+  ++  + +  Y     +   R    K+    L   AL+   Y + G L 
Sbjct: 232 VALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALL-DMYAKCGSLL 290

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK---------------- 169
            AR +FD +P + +   W+A++ G+       +A  L  AM ++                
Sbjct: 291 YARRVFDAMPARNEVT-WSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRA 349

Query: 170 ------------------------NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW 205
                                   ++ + NS+LS Y K G +  A   F+ M  +D VS+
Sbjct: 350 CASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSY 409

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFDQMPI 261
           + ++ GYV+    + A+  F+K+   NV     + V+++   +    +   R     + I
Sbjct: 410 SALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVII 469

Query: 262 RNVVA----WNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL 317
           R + +     NA+I  Y + G+I+ + ++F  MP R+ VSW TMI GY       EA  L
Sbjct: 470 RGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATAL 529

Query: 318 LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW-NVMIKGYAQCGRMDEA 376
             +M   N+      ++          +  + +  G H    W +VM  GY    RM+  
Sbjct: 530 FLEM--NNLGFPPDGVTFICLLSACSHSGLVIE--GKH----WFHVMRHGYGLTPRMEHY 581

Query: 377 INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
           I +       D+++             +D+A +  + M  R +   W AL+
Sbjct: 582 ICMV------DLLSRGGF---------LDEAYEFIQSMPLRADVRVWVALL 617



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 170/410 (41%), Gaps = 73/410 (17%)

Query: 26  GKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIA 85
            K G +  A ++F  M  +N VT++++I  +    R+  A  LF+ M  + L        
Sbjct: 284 AKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC------- 336

Query: 86  GYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTAC 142
            +L    +  A               A     + R GE     +L  LL       D   
Sbjct: 337 -FLSPTSIASALR-------------ACASLDHLRMGE-----QLHALLAKSGVHADLTA 377

Query: 143 WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME---- 198
            N++++ YAK G  ++A  L D M  K+ VS+++++SGY +NG    A   F+ M+    
Sbjct: 378 GNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNV 437

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG----YARNGRMLEARR 254
           E D  +   ++     L  L         +  + + S  ++ +     YA+ GR+  +R+
Sbjct: 438 EPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQ 497

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
           +F+ MP R++V+WN MIA Y   G  +EA  LF+EM   N + +    DG   I      
Sbjct: 498 VFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEM---NNLGFPP--DGVTFIC----- 547

Query: 315 RRLLDQMPYKNIAAQ-----TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ 369
             LL    +  +  +       M  GY    RM+           H +   +++ +G   
Sbjct: 548 --LLSACSHSGLVIEGKHWFHVMRHGYGLTPRME-----------HYICMVDLLSRG--- 591

Query: 370 CGRMDEAINLFRQM-VNKDIVTWNTMIAGYAQIRQMDDAVKI---FEEMG 415
            G +DEA    + M +  D+  W  ++      + +D   K+    +E+G
Sbjct: 592 -GFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELG 640



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 119/242 (49%), Gaps = 23/242 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  ++   K+G +++AI +F +M+ K+TV+Y++++S Y +NGR  +A  +F++M   N+ 
Sbjct: 379 NSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVE 438

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWA----LMITCYTRKGELEKAREL 130
               +  S+I    H   ++  R     +    L S       +I  Y + G ++ +R++
Sbjct: 439 PDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQV 498

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGE 186
           F+++P++ D   WN M+AGY   G   EA  L   M +       V++  +LS  + +G 
Sbjct: 499 FNMMPSR-DIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGL 557

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDD-------LDSAWKFFQKIP-EQNVVSWVT 238
           +     +F  M  R        ++ Y+ + D       LD A++F Q +P   +V  WV 
Sbjct: 558 VIEGKHWFHVM--RHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVA 615

Query: 239 ML 240
           +L
Sbjct: 616 LL 617


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  348 bits (892), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 227/753 (30%), Positives = 381/753 (50%), Gaps = 93/753 (12%)

Query: 57  AKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMIT 116
           A + R+  A  LF++ P R+  S+ S++ G+  + + +EA  LF      ++    + + 
Sbjct: 42  ASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLF-----LNIQHLGMEMD 96

Query: 117 CYTRKGELEKARELFDLLPNKE------------DTACWNAMVAGYAKIGNYNEAKKLLD 164
           C      L+ +  L D L  ++            D +   ++V  Y K  N+ + + + D
Sbjct: 97  CSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFD 156

Query: 165 AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME-------------------ERDVVSW 205
            M  +N+V+W +++SGY +N         F  M+                   E  V   
Sbjct: 157 EMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGR 216

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
            L +   V  + LD      + IP  N     ++++ Y + G + +AR LFD+  +++VV
Sbjct: 217 GLQVHTVVVKNGLD------KTIPVSN-----SLINLYLKCGNVRKARILFDKTEVKSVV 265

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM---- 321
            WN+MI+ Y   G   EA  +F  M   +     +     +++    +  R  +Q+    
Sbjct: 266 TWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSV 325

Query: 322 -PYKNIAAQ---TAMISGYVQNKRMDEANQIFDKIG-THDVVCWNVMIKGYAQCGRMDEA 376
             Y  +  Q   TA++  Y +   M +A ++F + G   +VV W  MI G+ Q    +EA
Sbjct: 326 VKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEA 385

Query: 377 INLFRQM--------------------------VNKDIVTWN---------TMIAGYAQI 401
           + LF +M                          V+  +V  N          ++  Y ++
Sbjct: 386 VGLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKL 445

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
            ++D+A K+F  +   ++ V+W+A+++G+ Q      A+KIF  +T+ G K +  T +  
Sbjct: 446 GKVDEAAKVFSGI-DNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSI 504

Query: 462 LSACA-HLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVD 520
           L+ CA   A++  G+Q H  AIKS   + L V ++L+TMYAK G I++AE +FK     D
Sbjct: 505 LNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKD 564

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE 580
           ++SWNS+I+GYA +G A +A+ +F+EM    V  D VTFIGV +AC+H GLV+ G K F+
Sbjct: 565 LVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFD 624

Query: 581 CMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNI 640
            M     I P  EH +CM+DL SRAG+L++A +++  M     + IW T+L ACR+H+  
Sbjct: 625 IMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKT 684

Query: 641 KLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEV 700
           +LGR+A EK+  + P+ ++ Y LLSNM+AE+G W E  KVR  M     +K+PG SWIEV
Sbjct: 685 ELGRLAAEKIIAMIPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEV 744

Query: 701 KNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           KN+ + FL+GD       +I   L+ L+ ++++
Sbjct: 745 KNKTYAFLAGDRSHPLKDQIYMKLEDLSTRLKD 777



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 124/522 (23%), Positives = 235/522 (45%), Gaps = 88/522 (16%)

Query: 242 GYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTM 301
           G A + R+  A  LFD+ P R+  ++ +++  + + G+ +EA RLF+ +         ++
Sbjct: 40  GAASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSI 99

Query: 302 IDGYVRIAK--LDE--ARRLLDQMP----YKNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
               ++++    DE   R+L  Q        +++  T+++  Y++     +   +FD++ 
Sbjct: 100 FSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMK 159

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQM------------------------------ 383
             +VV W  +I GYA+    +E + LF +M                              
Sbjct: 160 ERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQ 219

Query: 384 ---------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
                    ++K I   N++I  Y +   +  A  +F++  + ++ V+WN++ISG+  N 
Sbjct: 220 VHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKT-EVKSVVTWNSMISGYAANG 278

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN 494
             L+AL +F  M     +   S+ A  +  CA+L  L+   Q+H   +K G+V D  +  
Sbjct: 279 LDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRT 338

Query: 495 SLITMYAKCGRIQNAELLFKDADPV-DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA 553
           +L+  Y+KC  + +A  LFK+   + +V+SW ++I+G+  N    EA+ LF EM  +GV 
Sbjct: 339 ALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVR 398

Query: 554 PDPVTFIGVLSA--------------------CSHVG--LVDGGLKLFECMTEVYAIEPL 591
           P+  T+  +L+A                     S VG  L+D  +KL +          +
Sbjct: 399 PNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGI 458

Query: 592 ----VEHYACMIDLLSRAGRLDEAF----EMVKGMKIKPNAGIWGTLLGAC-----RMHQ 638
               +  ++ M+   ++AG  + A     E+ KG  +KPN   + ++L  C      M Q
Sbjct: 459 DNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKG-GVKPNEFTFSSILNVCAATTASMGQ 517

Query: 639 NIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKV 680
             +    A++  S L+       ALL+ M+A+ G  +  E+V
Sbjct: 518 GKQFHGFAIK--SRLDSSLCVSSALLT-MYAKKGHIESAEEV 556



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 107/444 (24%), Positives = 185/444 (41%), Gaps = 84/444 (18%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL----VSWNS 82
           K G V +A  +F +   K+ VT+NSMIS YA NG   +A  +F  M   ++     S+ S
Sbjct: 245 KCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFAS 304

Query: 83  MI-----------AGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           +I              LH   VK    +FD+  R      ALM+  Y++   +  A  LF
Sbjct: 305 IIKLCANLKELRFTEQLHCSVVKYGF-VFDQNIRT-----ALMVA-YSKCMAMLDALRLF 357

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEM 187
                  +   W AM++G+ +     EA  L   M  K +     +++ +L+        
Sbjct: 358 KETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISPS 417

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
            + ++  +   ER       +LD YV+L  +D A K F  I  +++V+W  ML+GYA+ G
Sbjct: 418 EVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAG 477

Query: 248 RMLEARRLFDQM-------------PIRNVVAW--------------------------- 267
               A ++F ++              I NV A                            
Sbjct: 478 ETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVS 537

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
           +A++  Y ++G IE A  +F    E++ VSW +MI GY +  +  +A  +  +M  + + 
Sbjct: 538 SALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVK 597

Query: 328 AQTAMISGY----VQNKRMDEANQIFD------KIGT---HDVVCWNVMIKGYAQCGRMD 374
             +    G          ++E  + FD      KI     H+    + M+  Y++ G+++
Sbjct: 598 MDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHN----SCMVDLYSRAGQLE 653

Query: 375 EAINLFRQMVNKDIVT-WNTMIAG 397
           +A+ +   M N    T W T++A 
Sbjct: 654 KAMKVIDNMPNLAGSTIWRTILAA 677



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 102/194 (52%), Gaps = 14/194 (7%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL---- 77
           +T   K G +E A ++F +  +K+ V++NSMIS YA++G+   A  +F++M +R +    
Sbjct: 541 LTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDS 600

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARELFD 132
           V++  + A   H   V+E  + FD M R     P     + M+  Y+R G+LEKA ++ D
Sbjct: 601 VTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVID 660

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNEAKKL----LDAMPSKNIVSWNSMLSGYTKNGEMH 188
            +PN   +  W  ++A   ++    E  +L    + AM  ++  ++  + + Y ++G+  
Sbjct: 661 NMPNLAGSTIWRTILAA-CRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAESGDWQ 719

Query: 189 LASKFFEAMEERDV 202
             +K  + M ER+V
Sbjct: 720 ERAKVRKLMNERNV 733



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 139/326 (42%), Gaps = 30/326 (9%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K G+V+EA K+FS +  K+ V +++M++ YA+ G    A K+F ++ +  +       + 
Sbjct: 444 KLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSS 503

Query: 87  YLHNDKVKEARELFDKMFR---------PDLFSWALMITCYTRKGELEKARELFDLLPNK 137
            L+      A     K F            L   + ++T Y +KG +E A E+F     K
Sbjct: 504 ILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREK 563

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASKF 193
            D   WN+M++GYA+ G   +A  +   M  + +    V++  + +  T  G +    K+
Sbjct: 564 -DLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKY 622

Query: 194 FEAMEERDVVSW-----NLMLDGYVELDDLDSAWKFFQKIPE-QNVVSWVTMLSGYARNG 247
           F+ M     ++      + M+D Y     L+ A K    +P       W T+L+    + 
Sbjct: 623 FDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHK 682

Query: 248 RM----LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN-----PVSW 298
           +     L A ++   +P  +  A+  +   Y + G  +E A++   M ERN       SW
Sbjct: 683 KTELGRLAAEKIIAMIP-EDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSW 741

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYK 324
             + +        D +  L DQ+  K
Sbjct: 742 IEVKNKTYAFLAGDRSHPLKDQIYMK 767


>gi|15228064|ref|NP_181235.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206293|sp|Q9SJK9.1|PP189_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g36980, mitochondrial; Flags: Precursor
 gi|4883614|gb|AAD31583.1| hypothetical protein [Arabidopsis thaliana]
 gi|330254236|gb|AEC09330.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 625

 Score =  348 bits (892), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 200/616 (32%), Positives = 311/616 (50%), Gaps = 36/616 (5%)

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV---- 202
           +A  AK G    A+++ D MP  + V+WN+ML+ Y++ G    A   F  +   D     
Sbjct: 11  IASLAKSGRIASARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLRFSDAKPDD 70

Query: 203 VSWNLMLDGYVELDDLDSAWK---------FFQKIPEQNVVSWVTMLSGYARNGRMLEAR 253
            S+  +L     L ++    K         F   +P  N     +++  Y +    L A 
Sbjct: 71  YSFTAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVNN-----SLIDMYGKCSDTLSAN 125

Query: 254 RLFDQMPI--RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKL 311
           ++F  M    RN V W +++ AY+   Q E A  +F+EMP+R   +W  MI G+    KL
Sbjct: 126 KVFRDMCCDSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHAHCGKL 185

Query: 312 DEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC---W-------N 361
           +    L  +M            S  +     D +N ++ ++  H V+    W       N
Sbjct: 186 ESCLSLFKEMLESEFKPDCYTFSSLMNACSADSSNVVYGRM-VHAVMLKNGWSSAVEAKN 244

Query: 362 VMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
            ++  Y + G  D+A+     +     V+WN++I    +I + + A+++F  +   +N V
Sbjct: 245 SVLSFYTKLGSRDDAMRELESIEVLTQVSWNSIIDACMKIGETEKALEVFH-LAPEKNIV 303

Query: 422 SWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLA 481
           +W  +I+G+ +N     AL+ FV M + G  +DH      L AC+ LA L  G+ IH   
Sbjct: 304 TWTTMITGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGKMIHGCL 363

Query: 482 IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
           I  G+    +VGN+L+ +YAKCG I+ A+  F D    D++SWN+++  + ++G A +A+
Sbjct: 364 IHCGFQGYAYVGNALVNLYAKCGDIKEADRAFGDIANKDLVSWNTMLFAFGVHGLADQAL 423

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601
           KL++ M+  G+ PD VTFIG+L+ CSH GLV+ G  +FE M + Y I   V+H  CMID+
Sbjct: 424 KLYDNMIASGIKPDNVTFIGLLTTCSHSGLVEEGCMIFESMVKDYRIPLEVDHVTCMIDM 483

Query: 602 LSRAGRLDEAFEMVKG----MKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK 657
             R G L EA ++       +    N   W TLLGAC  H + +LGR   + L   EP +
Sbjct: 484 FGRGGHLAEAKDLATTYSSLVTDSSNNSSWETLLGACSTHWHTELGREVSKVLKIAEPSE 543

Query: 658 TSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRT 717
              + LLSN++   GRW E E VR  M   G +K PGCSWIEV NQ+ TF+ GD    R 
Sbjct: 544 EMSFVLLSNLYCSTGRWKEGEDVRREMVERGMKKTPGCSWIEVGNQVSTFVVGDSSHPRL 603

Query: 718 AEICNTLKTLAAQIRN 733
            E+  TL  L  ++RN
Sbjct: 604 EELSETLNCLQHEMRN 619



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 145/580 (25%), Positives = 252/580 (43%), Gaps = 75/580 (12%)

Query: 47  VTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM--- 103
           V   S I++ AK+GR+  AR++F+ MP+ + V+WN+M+  Y      +EA  LF ++   
Sbjct: 5   VRLTSKIASLAKSGRIASARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLRFS 64

Query: 104 -FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACW---NAMVAGYAKIGNYNEA 159
             +PD +S+  +++     G ++  R++  L+      A     N+++  Y K  +   A
Sbjct: 65  DAKPDDYSFTAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKCSDTLSA 124

Query: 160 KKLLDAM--PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDD 217
            K+   M   S+N V+W S+L  Y    +   A   F  M +R   +WN+M+ G+     
Sbjct: 125 NKVFRDMCCDSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHAHCGK 184

Query: 218 LDSAWKFFQKIPE---------------------QNVV------------SWV------- 237
           L+S    F+++ E                      NVV             W        
Sbjct: 185 LESCLSLFKEMLESEFKPDCYTFSSLMNACSADSSNVVYGRMVHAVMLKNGWSSAVEAKN 244

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
           ++LS Y + G   +A R  + + +   V+WN++I A ++ G+ E+A  +F   PE+N V+
Sbjct: 245 SVLSFYTKLGSRDDAMRELESIEVLTQVSWNSIIDACMKIGETEKALEVFHLAPEKNIVT 304

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNI-------AAQTAMISG--YVQNKRMDEANQI 348
           WTTMI GY R    ++A R   +M    +        A     SG   + + +M     I
Sbjct: 305 WTTMITGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGKMIHGCLI 364

Query: 349 FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAV 408
                 +  V  N ++  YA+CG + EA   F  + NKD+V+WNTM+  +      D A+
Sbjct: 365 HCGFQGYAYV-GNALVNLYAKCGDIKEADRAFGDIANKDLVSWNTMLFAFGVHGLADQAL 423

Query: 409 KIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK---KADHSTLACAL 462
           K+++ M   G + + V++  L++    +    +   IF  M ++ +   + DH T  C +
Sbjct: 424 KLYDNMIASGIKPDNVTFIGLLTTCSHSGLVEEGCMIFESMVKDYRIPLEVDHVT--CMI 481

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL------LFKDA 516
                   L   + +      S  V D    +S  T+   C    + EL      + K A
Sbjct: 482 DMFGRGGHLAEAKDL--ATTYSSLVTDSSNNSSWETLLGACSTHWHTELGREVSKVLKIA 539

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
           +P + +S+  L   Y   G   E   +  EMV  G+   P
Sbjct: 540 EPSEEMSFVLLSNLYCSTGRWKEGEDVRREMVERGMKKTP 579



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/393 (26%), Positives = 181/393 (46%), Gaps = 35/393 (8%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQM--SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
            N  I   GK      A K+F  M    +N VT+ S++ AY    +   A  +F +MP+R
Sbjct: 108 NNSLIDMYGKCSDTLSANKVFRDMCCDSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKR 167

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWA-LMITCYTRKGELEKAREL 130
              +WN MI+G+ H  K++    LF +M    F+PD ++++ LM  C      +   R +
Sbjct: 168 VAFAWNIMISGHAHCGKLESCLSLFKEMLESEFKPDCYTFSSLMNACSADSSNVVYGRMV 227

Query: 131 FD-LLPNKEDTA--CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
              +L N   +A    N++++ Y K+G+ ++A + L+++     VSWNS++    K GE 
Sbjct: 228 HAVMLKNGWSSAVEAKNSVLSFYTKLGSRDDAMRELESIEVLTQVSWNSIIDACMKIGET 287

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-------WVTML 240
             A + F    E+++V+W  M+ GY    D + A +FF ++ +  V S        +   
Sbjct: 288 EKALEVFHLAPEKNIVTWTTMITGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHAC 347

Query: 241 SGYA--RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW 298
           SG A   +G+M+    +         V  NA++  Y + G I+EA R F ++  ++ VSW
Sbjct: 348 SGLALLGHGKMIHGCLIHCGFQGYAYVG-NALVNLYAKCGDIKEADRAFGDIANKDLVSW 406

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYV----QNKRMDEANQIFDK--- 351
            TM+  +      D+A +L D M    I        G +     +  ++E   IF+    
Sbjct: 407 NTMLFAFGVHGLADQALKLYDNMIASGIKPDNVTFIGLLTTCSHSGLVEEGCMIFESMVK 466

Query: 352 -----IGTHDVVCWNVMIKGYAQCGRMDEAINL 379
                +    V C   MI  + + G + EA +L
Sbjct: 467 DYRIPLEVDHVTC---MIDMFGRGGHLAEAKDL 496



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 120/261 (45%), Gaps = 20/261 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V  +N  ++   K G  ++A++    +     V++NS+I A  K G    A ++F   
Sbjct: 238 SAVEAKNSVLSFYTKLGSRDDAMRELESIEVLTQVSWNSIIDACMKIGETEKALEVFHLA 297

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAR 128
           P++N+V+W +MI GY  N   ++A   F +M +     D F++  ++   +    L   +
Sbjct: 298 PEKNIVTWTTMITGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGK 357

Query: 129 ELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
            +   L +   +      NA+V  YAK G+  EA +    + +K++VSWN+ML  +  +G
Sbjct: 358 MIHGCLIHCGFQGYAYVGNALVNLYAKCGDIKEADRAFGDIANKDLVSWNTMLFAFGVHG 417

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVELDD----LDSAWKFFQ------KIPEQNVVS 235
               A K ++ M    +   N+   G +        ++     F+      +IP +  V 
Sbjct: 418 LADQALKLYDNMIASGIKPDNVTFIGLLTTCSHSGLVEEGCMIFESMVKDYRIPLE--VD 475

Query: 236 WVT-MLSGYARNGRMLEARRL 255
            VT M+  + R G + EA+ L
Sbjct: 476 HVTCMIDMFGRGGHLAEAKDL 496



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 45/85 (52%)

Query: 494 NSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA 553
            S I   AK GRI +A  +F     +D ++WN+++  Y+  G   EAI LF ++      
Sbjct: 8   TSKIASLAKSGRIASARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLRFSDAK 67

Query: 554 PDPVTFIGVLSACSHVGLVDGGLKL 578
           PD  +F  +LS C+ +G V  G K+
Sbjct: 68  PDDYSFTAILSTCASLGNVKFGRKI 92



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 69/148 (46%), Gaps = 13/148 (8%)

Query: 14  YVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP 73
           Y +  N  +    K G ++EA + F  ++ K+ V++N+M+ A+  +G  + A KL++ M 
Sbjct: 371 YAYVGNALVNLYAKCGDIKEADRAFGDIANKDLVSWNTMLFAFGVHGLADQALKLYDNMI 430

Query: 74  QRNLVSWNSMIAGYL----HNDKVKEARELFDKMFRP-----DLFSWALMITCYTRKGEL 124
              +   N    G L    H+  V+E   +F+ M +      ++     MI  + R G L
Sbjct: 431 ASGIKPDNVTFIGLLTTCSHSGLVEEGCMIFESMVKDYRIPLEVDHVTCMIDMFGRGGHL 490

Query: 125 EKARELF----DLLPNKEDTACWNAMVA 148
            +A++L      L+ +  + + W  ++ 
Sbjct: 491 AEAKDLATTYSSLVTDSSNNSSWETLLG 518


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 197/538 (36%), Positives = 294/538 (54%), Gaps = 49/538 (9%)

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN---PVSWT 299
           YA+  R  +ARR+FD+MP+R+ VAWNA++A Y + G    A  + + M E     P S T
Sbjct: 104 YAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSIT 163

Query: 300 -------------------------------------TMIDGYVRIAKLDEARRLLDQMP 322
                                                 ++D Y +   +  AR + D MP
Sbjct: 164 LVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMP 223

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ-CGRM---DEAIN 378
            KN  +  AMI GY QN    EA  +F+++    V   +V +    Q CG +   DE + 
Sbjct: 224 TKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMR 283

Query: 379 ----LFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
               L R  ++ ++   N +I  Y++ +++D A  +F+E+  RR  VSWNA+I G  QN 
Sbjct: 284 VHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDEL-DRRTQVSWNAMILGCAQNG 342

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN 494
              DA+++F  M  E  K D  TL   + A A ++     R IH  +I+     D++V  
Sbjct: 343 CSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLT 402

Query: 495 SLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP 554
           +LI MYAKCGR+  A +LF  A    VI+WN++I GY  +G    A++LFEEM   G+ P
Sbjct: 403 ALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVP 462

Query: 555 DPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEM 614
           +  TF+ VLSACSH GLVD G + F  M E Y +EP +EHY  M+DLL RAG+LDEA+  
Sbjct: 463 NETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAF 522

Query: 615 VKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRW 674
           ++ M + P   ++G +LGAC++H+N++L   + +K+ EL PQ+   + LL+N++A A  W
Sbjct: 523 IQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMW 582

Query: 675 DEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            +V +VR +ME +G QK PG S I++KN+IHTF SG     +  EI + L  L  +I+
Sbjct: 583 KDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIK 640



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 195/447 (43%), Gaps = 79/447 (17%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----F 104
            ++ + YAK  R  DAR++F++MP R+ V+WN+++AGY  N   + A E+  +M      
Sbjct: 98  TALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGE 157

Query: 105 RPDLFSWALMITCYTRKGELEKARE--LFDLLPNKEDTA-CWNAMVAGYAKIGNYNEAKK 161
           RPD  +   ++        L   RE   F +    E+      A++  Y K G+   A+ 
Sbjct: 158 RPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARV 217

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDD 217
           + D MP+KN VSWN+M+ GY +NG+   A   F  M E  V    VS    L    EL  
Sbjct: 218 VFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGC 277

Query: 218 LDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
           LD   +  + +     + NV     +++ Y++  R+  A  +FD++  R  V+WNAMI  
Sbjct: 278 LDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILG 337

Query: 274 YVQRGQIEEAARLFIEMPERN--PVSWT--TMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
             Q G  E+A RLF  M   N  P S+T  ++I     I+   +AR              
Sbjct: 338 CAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQAR-------------- 383

Query: 330 TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIV 389
              I GY     +D+           DV     +I  YA+CGR++ A  LF     + ++
Sbjct: 384 --WIHGYSIRLHLDQ-----------DVYVLTALIDMYAKCGRVNIARILFNSARERHVI 430

Query: 390 TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
           TWN MI GY        AV++FEEM              G + NE               
Sbjct: 431 TWNAMIHGYGSHGFGKAAVELFEEMKS-----------IGIVPNE--------------- 464

Query: 450 GKKADHSTLACALSACAHLAALQLGRQ 476
                 +T    LSAC+H   +  GR+
Sbjct: 465 ------TTFLSVLSACSHAGLVDEGRE 485



 Score =  144 bits (362), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 126/500 (25%), Positives = 212/500 (42%), Gaps = 100/500 (20%)

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERN--PV--SWTTMIDGYVRIAKLDEARRLLDQMPY 323
           +A + A   R  +  A   F+ M      PV  ++T+++        L   R +  Q+  
Sbjct: 28  HARLRASAARSDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAA 87

Query: 324 KNI----AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG-------- 371
           + I     A TA+ + Y + +R  +A ++FD++   D V WN ++ GYA+ G        
Sbjct: 88  RGIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEM 147

Query: 372 --RMDE-------AINL-----------------------FRQMVNKDIVTWNTMIAGYA 399
             RM E       +I L                        R  + + +     ++  Y 
Sbjct: 148 VVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYC 207

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
           +   +  A  +F+ M   +N+VSWNA+I G+ QN    +AL +F  M +EG      ++ 
Sbjct: 208 KCGDIRAARVVFDWM-PTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVL 266

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
            AL AC  L  L  G ++H L ++ G  +++ V N+LITMY+KC R+  A  +F + D  
Sbjct: 267 AALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRR 326

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG------LVD 573
             +SWN++I G A NG + +A++LF  M +E V PD  T + V+ A + +        + 
Sbjct: 327 TQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIH 386

Query: 574 GGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLD------------------------ 609
           G         +VY +  L++ YA       + GR++                        
Sbjct: 387 GYSIRLHLDQDVYVLTALIDMYA-------KCGRVNIARILFNSARERHVITWNAMIHGY 439

Query: 610 ----------EAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSE---LEPQ 656
                     E FE +K + I PN   + ++L AC     +  GR     + E   LEP 
Sbjct: 440 GSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPG 499

Query: 657 KTSCYALLSNMHAEAGRWDE 676
               Y  + ++   AG+ DE
Sbjct: 500 MEH-YGTMVDLLGRAGKLDE 518



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 134/292 (45%), Gaps = 21/292 (7%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR---- 105
            +++ AY K G +  AR +F+ MP +N VSWN+MI GY  N   +EA  LF++M      
Sbjct: 200 TAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVD 259

Query: 106 -PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKK 161
             D+   A +  C    G L++   + +LL       + +  NA++  Y+K    + A  
Sbjct: 260 VTDVSVLAALQAC-GELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASH 318

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL-----D 216
           + D +  +  VSWN+M+ G  +NG    A + F  M+  +V   +  L   +       D
Sbjct: 319 VFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISD 378

Query: 217 DLDSAWKFFQKIP---EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
            L + W     I    +Q+V     ++  YA+ GR+  AR LF+    R+V+ WNAMI  
Sbjct: 379 PLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHG 438

Query: 274 YVQRGQIEEAARLFIEMPE----RNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           Y   G  + A  LF EM       N  ++ +++        +DE R     M
Sbjct: 439 YGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSM 490



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 157/352 (44%), Gaps = 27/352 (7%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K G +  A  +F  M  KN+V++N+MI  YA+NG   +A  LF +M +  +   +  +  
Sbjct: 208 KCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLA 267

Query: 87  YLHN-------DKVKEARELFDKM-FRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
            L         D+     EL  ++    ++     +IT Y++   ++ A  +FD L ++ 
Sbjct: 268 ALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDEL-DRR 326

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI-------VSWNSMLSGYTKNGEMHLAS 191
               WNAM+ G A+ G   +A +L   M  +N+       VS    L+  +   +     
Sbjct: 327 TQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIH 386

Query: 192 KFFEAME-ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRML 250
            +   +  ++DV     ++D Y +   ++ A   F    E++V++W  M+ GY  +G   
Sbjct: 387 GYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGK 446

Query: 251 EARRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTM 301
            A  LF++M     + N   + ++++A    G ++E    F  M E   +      + TM
Sbjct: 447 AAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTM 506

Query: 302 IDGYVRIAKLDEARRLLDQMPY-KNIAAQTAMISGYVQNKRMDEANQIFDKI 352
           +D   R  KLDEA   + +MP    ++   AM+     +K ++ A +   KI
Sbjct: 507 VDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKI 558



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 142/304 (46%), Gaps = 24/304 (7%)

Query: 26  GKSGRVEEAIKIFSQMSQ----KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           G+ G ++E +++   + +     N    N++I+ Y+K  RV+ A  +F+++ +R  VSWN
Sbjct: 273 GELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWN 332

Query: 82  SMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDL---L 134
           +MI G   N   ++A  LF +M     +PD F+   +I       +  +AR +      L
Sbjct: 333 AMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRL 392

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
              +D     A++  YAK G  N A+ L ++   +++++WN+M+ GY  +G    A + F
Sbjct: 393 HLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELF 452

Query: 195 EAMEERDVV----SWNLMLDGYVELDDLDSAWKFFQKIPEQ-----NVVSWVTMLSGYAR 245
           E M+   +V    ++  +L        +D   ++F  + E       +  + TM+    R
Sbjct: 453 EEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGR 512

Query: 246 NGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTTM 301
            G++ EA     +MP+   +  + AM+ A      +   EE+A+   E+  +  V    +
Sbjct: 513 AGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLL 572

Query: 302 IDGY 305
            + Y
Sbjct: 573 ANIY 576



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 115/260 (44%), Gaps = 27/260 (10%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V   N  IT   K  RV+ A  +F ++ ++  V++N+MI   A+NG   DA +LF +M
Sbjct: 295 SNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRM 354

Query: 73  PQRNL----VSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGEL 124
              N+     +  S+I          +AR +     R     D++    +I  Y + G +
Sbjct: 355 QLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRV 414

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV----SWNSMLSG 180
             AR LF+    +     WNAM+ GY   G    A +L + M S  IV    ++ S+LS 
Sbjct: 415 NIARILFNSARERH-VITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSA 473

Query: 181 YTKNGEMHLASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
            +  G +    ++F +M+E       +  +  M+D       LD AW F QK+P      
Sbjct: 474 CSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMP------ 527

Query: 236 WVTMLSGYARNGRMLEARRL 255
              M  G +  G ML A +L
Sbjct: 528 ---MDPGLSVYGAMLGACKL 544


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  347 bits (891), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 223/715 (31%), Positives = 363/715 (50%), Gaps = 88/715 (12%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF----DKMFR 105
           N++++ Y K G      K+F+++ +RN VSWNS+I+     +K + A E F    D+   
Sbjct: 137 NTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVE 196

Query: 106 PDLFSWALMITCYTRKGELE-----KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
           P  F+   ++T  +     E     K    + L   + ++   N +VA Y K+G    +K
Sbjct: 197 PSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSK 256

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSWNLMLDGYVELD 216
            LL +   +++V+WN++LS   +N ++  A ++   M     E D  + + +L     L+
Sbjct: 257 VLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLE 316

Query: 217 DLDS-----AWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
            L +     A+       ++N      ++  Y    ++L  RR+FD M  R +  WNAMI
Sbjct: 317 MLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMI 376

Query: 272 AAYVQRGQIEEAARLFIEMPER-----NPVSWTTMIDGYVRIAKLDE--------ARRLL 318
           A Y Q    +EA  LFI M E      N  +   ++   VR               +R L
Sbjct: 377 AGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGL 436

Query: 319 DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
           D+  +     Q  ++  Y +  ++D A +IF K+   D+V WN MI GY      ++A+ 
Sbjct: 437 DRDRF----VQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALL 492

Query: 379 LFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
           L  +M N +              R++          G  R ++  N++            
Sbjct: 493 LLHKMQNLE--------------RKVSK--------GASRVSLKPNSI------------ 518

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
                             TL   L +CA L+AL  G++IH  AIK+    D+ VG++L+ 
Sbjct: 519 ------------------TLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVD 560

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           MYAKCG +Q +  +F      +VI+WN +I  Y ++GN  EAI L   M+++GV P+ VT
Sbjct: 561 MYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVT 620

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
           FI V +ACSH G+VD GL++F  M   Y +EP  +HYAC++DLL RAGR+ EA++++  M
Sbjct: 621 FISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMM 680

Query: 619 KIKPN-AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEV 677
               N AG W +LLGA R+H N+++G IA + L +LEP   S Y LL+N+++ AG WD+ 
Sbjct: 681 PRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKA 740

Query: 678 EKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            +VR +M+  G +K+PGCSWIE  +++H F++GD    ++ ++   L+TL  ++R
Sbjct: 741 TEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMR 795



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 180/405 (44%), Gaps = 44/405 (10%)

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
           + +V   N ++  Y + G      ++F  + ERN VSW ++I       K + A      
Sbjct: 130 VDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRC 189

Query: 321 MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF 380
           M  +N+   +  +   V                     C N+ +      G+   A  L 
Sbjct: 190 MLDENVEPSSFTLVSVV-------------------TACSNLPMPEGLMMGKQVHAYGLR 230

Query: 381 RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
           +  +N  I+  NT++A Y ++ ++  +  +    G R + V+WN ++S   QNE  L+AL
Sbjct: 231 KGELNSFII--NTLVAMYGKLGKLASSKVLLGSFGGR-DLVTWNTVLSSLCQNEQLLEAL 287

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND-LFVGNSLITM 499
           +    M  EG + D  T++  L AC+HL  L+ G+++H  A+K+G +++  FVG++L+ M
Sbjct: 288 EYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDM 347

Query: 500 YAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME-GVAPDPVT 558
           Y  C ++ +   +F       +  WN++IAGY+ N +  EA+ LF  M    G+  +  T
Sbjct: 348 YCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTT 407

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYA---------CMIDLLSRAGRLD 609
             GV+ AC   G            +   AI   V              ++D+ SR G++D
Sbjct: 408 MAGVVPACVRSG----------AFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKID 457

Query: 610 EAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE 654
            A  +   M+ + +   W T++      ++ +   + + K+  LE
Sbjct: 458 IAMRIFGKMEDR-DLVTWNTMITGYVFSEHHEDALLLLHKMQNLE 501



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/426 (22%), Positives = 188/426 (44%), Gaps = 72/426 (16%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           N+   N++++ Y K G++  ++ L      R+LV+WN++++    N+++ EA E   +M 
Sbjct: 235 NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMV 294

Query: 104 ---FRPDLFSWALMITCYTRKGELEKARELFDL-LPN---KEDTACWNAMVAGYAKIGNY 156
                PD F+ + ++   +    L   +EL    L N    E++   +A+V  Y      
Sbjct: 295 LEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQV 354

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE----------------- 199
              +++ D M  + I  WN+M++GY++N     A   F  MEE                 
Sbjct: 355 LSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA 414

Query: 200 -----------------------RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSW 236
                                  RD    N ++D Y  L  +D A + F K+ ++++V+W
Sbjct: 415 CVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTW 474

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
            TM++GY  +    +A  L  +M               ++R   + A+R+ +   + N +
Sbjct: 475 NTMITGYVFSEHHEDALLLLHKM-------------QNLERKVSKGASRVSL---KPNSI 518

Query: 297 SWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
           +  T++     ++ L + + +    +      ++A  +A++  Y +   +  + ++FD+I
Sbjct: 519 TLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQI 578

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAV 408
              +V+ WNV+I  Y   G   EAI+L R M    V  + VT+ ++ A  +    +D+ +
Sbjct: 579 PQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGL 638

Query: 409 KIFEEM 414
           +IF  M
Sbjct: 639 RIFYVM 644



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 144/326 (44%), Gaps = 31/326 (9%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           ++G+   A  + +    +N+   ++++  Y    +V   R++F+ M  R +  WN+MIAG
Sbjct: 319 RTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAG 378

Query: 87  YLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFDLLPNK---E 138
           Y  N+  KEA  LF  M        +  + A ++    R G   +   +   +  +    
Sbjct: 379 YSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDR 438

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           D    N ++  Y+++G  + A ++   M  +++V+WN+M++GY  +     A      M+
Sbjct: 439 DRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQ 498

Query: 199 --ERDV-------------VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG- 242
             ER V             ++   +L     L  L    +      + N+ + V + S  
Sbjct: 499 NLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSAL 558

Query: 243 ---YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF----IEMPERNP 295
              YA+ G +  +R++FDQ+P +NV+ WN +I AY   G  +EA  L     ++  + N 
Sbjct: 559 VDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNE 618

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQM 321
           V++ ++         +DE  R+   M
Sbjct: 619 VTFISVFAACSHSGMVDEGLRIFYVM 644



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 3/169 (1%)

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
           A  IF  + + R+   W  L+   +++    +A+  +V M   G K D+      L A A
Sbjct: 51  APSIF--ISQSRSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVA 108

Query: 467 HLAALQLGRQIHHLAIKSGY-VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
            L  ++LG+QIH    K GY V+ + V N+L+ +Y KCG       +F      + +SWN
Sbjct: 109 DLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWN 168

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574
           SLI+          A++ F  M+ E V P   T + V++ACS++ + +G
Sbjct: 169 SLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEG 217


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  347 bits (891), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 223/715 (31%), Positives = 363/715 (50%), Gaps = 88/715 (12%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF----DKMFR 105
           N++++ Y K G      K+F+++ +RN VSWNS+I+     +K + A E F    D+   
Sbjct: 50  NTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVE 109

Query: 106 PDLFSWALMITCYTRKGELE-----KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
           P  F+   ++T  +     E     K    + L   + ++   N +VA Y K+G    +K
Sbjct: 110 PSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSK 169

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSWNLMLDGYVELD 216
            LL +   +++V+WN++LS   +N ++  A ++   M     E D  + + +L     L+
Sbjct: 170 VLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLE 229

Query: 217 DLDS-----AWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
            L +     A+       ++N      ++  Y    ++L  RR+FD M  R +  WNAMI
Sbjct: 230 MLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMI 289

Query: 272 AAYVQRGQIEEAARLFIEMPER-----NPVSWTTMIDGYVRIAKLDE--------ARRLL 318
           A Y Q    +EA  LFI M E      N  +   ++   VR               +R L
Sbjct: 290 AGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGL 349

Query: 319 DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
           D+  +     Q  ++  Y +  ++D A +IF K+   D+V WN MI GY      ++A+ 
Sbjct: 350 DRDRF----VQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALL 405

Query: 379 LFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
           L  +M N +              R++          G  R ++  N++            
Sbjct: 406 LLHKMQNLE--------------RKVSK--------GASRVSLKPNSI------------ 431

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
                             TL   L +CA L+AL  G++IH  AIK+    D+ VG++L+ 
Sbjct: 432 ------------------TLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVD 473

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           MYAKCG +Q +  +F      +VI+WN +I  Y ++GN  EAI L   M+++GV P+ VT
Sbjct: 474 MYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVT 533

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
           FI V +ACSH G+VD GL++F  M   Y +EP  +HYAC++DLL RAGR+ EA++++  M
Sbjct: 534 FISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMM 593

Query: 619 KIKPN-AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEV 677
               N AG W +LLGA R+H N+++G IA + L +LEP   S Y LL+N+++ AG WD+ 
Sbjct: 594 PRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKA 653

Query: 678 EKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            +VR +M+  G +K+PGCSWIE  +++H F++GD    ++ ++   L+TL  ++R
Sbjct: 654 TEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMR 708



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 180/405 (44%), Gaps = 44/405 (10%)

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
           + +V   N ++  Y + G      ++F  + ERN VSW ++I       K + A      
Sbjct: 43  VDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRC 102

Query: 321 MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF 380
           M  +N+   +  +   V                     C N+ +      G+   A  L 
Sbjct: 103 MLDENVEPSSFTLVSVV-------------------TACSNLPMPEGLMMGKQVHAYGLR 143

Query: 381 RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
           +  +N  I+  NT++A Y ++ ++  +  +    G R + V+WN ++S   QNE  L+AL
Sbjct: 144 KGELNSFII--NTLVAMYGKLGKLASSKVLLGSFGGR-DLVTWNTVLSSLCQNEQLLEAL 200

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND-LFVGNSLITM 499
           +    M  EG + D  T++  L AC+HL  L+ G+++H  A+K+G +++  FVG++L+ M
Sbjct: 201 EYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDM 260

Query: 500 YAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME-GVAPDPVT 558
           Y  C ++ +   +F       +  WN++IAGY+ N +  EA+ LF  M    G+  +  T
Sbjct: 261 YCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTT 320

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYA---------CMIDLLSRAGRLD 609
             GV+ AC   G            +   AI   V              ++D+ SR G++D
Sbjct: 321 MAGVVPACVRSG----------AFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKID 370

Query: 610 EAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE 654
            A  +   M+ + +   W T++      ++ +   + + K+  LE
Sbjct: 371 IAMRIFGKMEDR-DLVTWNTMITGYVFSEHHEDALLLLHKMQNLE 414



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/426 (22%), Positives = 188/426 (44%), Gaps = 72/426 (16%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           N+   N++++ Y K G++  ++ L      R+LV+WN++++    N+++ EA E   +M 
Sbjct: 148 NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMV 207

Query: 104 ---FRPDLFSWALMITCYTRKGELEKARELFDL-LPN---KEDTACWNAMVAGYAKIGNY 156
                PD F+ + ++   +    L   +EL    L N    E++   +A+V  Y      
Sbjct: 208 LEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQV 267

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE----------------- 199
              +++ D M  + I  WN+M++GY++N     A   F  MEE                 
Sbjct: 268 LSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA 327

Query: 200 -----------------------RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSW 236
                                  RD    N ++D Y  L  +D A + F K+ ++++V+W
Sbjct: 328 CVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTW 387

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
            TM++GY  +    +A  L  +M               ++R   + A+R+ +   + N +
Sbjct: 388 NTMITGYVFSEHHEDALLLLHKM-------------QNLERKVSKGASRVSL---KPNSI 431

Query: 297 SWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
           +  T++     ++ L + + +    +      ++A  +A++  Y +   +  + ++FD+I
Sbjct: 432 TLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQI 491

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAV 408
              +V+ WNV+I  Y   G   EAI+L R M    V  + VT+ ++ A  +    +D+ +
Sbjct: 492 PQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGL 551

Query: 409 KIFEEM 414
           +IF  M
Sbjct: 552 RIFYVM 557



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 144/326 (44%), Gaps = 31/326 (9%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           ++G+   A  + +    +N+   ++++  Y    +V   R++F+ M  R +  WN+MIAG
Sbjct: 232 RTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAG 291

Query: 87  YLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFDLLPNK---E 138
           Y  N+  KEA  LF  M        +  + A ++    R G   +   +   +  +    
Sbjct: 292 YSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDR 351

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           D    N ++  Y+++G  + A ++   M  +++V+WN+M++GY  +     A      M+
Sbjct: 352 DRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQ 411

Query: 199 --ERDV-------------VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG- 242
             ER V             ++   +L     L  L    +      + N+ + V + S  
Sbjct: 412 NLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSAL 471

Query: 243 ---YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF----IEMPERNP 295
              YA+ G +  +R++FDQ+P +NV+ WN +I AY   G  +EA  L     ++  + N 
Sbjct: 472 VDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNE 531

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQM 321
           V++ ++         +DE  R+   M
Sbjct: 532 VTFISVFAACSHSGMVDEGLRIFYVM 557



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 1/126 (0%)

Query: 450 GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY-VNDLFVGNSLITMYAKCGRIQN 508
           G K D+      L A A L  ++LG+QIH    K GY V+ + V N+L+ +Y KCG    
Sbjct: 5   GIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGA 64

Query: 509 AELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
              +F      + +SWNSLI+          A++ F  M+ E V P   T + V++ACS+
Sbjct: 65  VYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSN 124

Query: 569 VGLVDG 574
           + + +G
Sbjct: 125 LPMPEG 130


>gi|357521583|ref|XP_003631080.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525102|gb|AET05556.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  347 bits (891), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 173/437 (39%), Positives = 271/437 (62%), Gaps = 9/437 (2%)

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK 183
           ++KAR+ + +        C N+ ++ + + G+ + A ++ D+MP KN+ SWN ML+GY K
Sbjct: 40  VQKARDTYIV-------KCTNS-ISTHMRNGHCHLALRVFDSMPYKNLFSWNLMLTGYVK 91

Query: 184 NGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGY 243
           N  +  A   F+ M ++D VSWN+ML GYV    +D A   F  +P ++ +SW  +L+ Y
Sbjct: 92  NRRLVDARNLFDLMPQKDAVSWNVMLSGYVRSGCVDEAKLVFDNMPYKDSISWNGLLAVY 151

Query: 244 ARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMID 303
            +NGR+ EARRLF+      +++WN ++  YV+R  + +A RLF  MP RN +SW TMI 
Sbjct: 152 VQNGRLEEARRLFESKVDWELISWNCLMGGYVKRKMLGDARRLFDHMPVRNAISWNTMIS 211

Query: 304 GYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVM 363
           GY R   L +ARRL ++ P +++   TAM+  YVQ+  +DEA ++FD++     + +NVM
Sbjct: 212 GYARDGDLLQARRLFEESPVRDVFTWTAMVFAYVQSGMLDEARRVFDEMPGKREMAYNVM 271

Query: 364 IKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
           I GY Q  +MD A  LF  M  +++ +WNT+I+GY Q   +  A ++F+ M  +R+ VSW
Sbjct: 272 IAGYVQYKKMDMARELFEAMPCRNVGSWNTIISGYGQNGDIAQARELFDMM-TQRDCVSW 330

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
            A+I+G+ Q   +   + + V M ++GK  + ST  CALS CA +AAL LG+Q+H  A+K
Sbjct: 331 AAIIAGYAQTGHYEKVMHMLVKMKRDGKSLNRSTFCCALSTCAGMAALVLGKQVHGQAVK 390

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
           +GY N   VGN+L+ MY KCG I  A  +F+     D+ISWN+++AGYA +G   +A+ +
Sbjct: 391 TGYDNGCLVGNALLEMYCKCGSIGEAYDVFERMQLKDIISWNTMLAGYARHGFGRQALLV 450

Query: 544 FEEMVMEGVAPDPVTFI 560
           F+ M   G  PD +T +
Sbjct: 451 FDSMKTAGFKPDEITML 467



 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 217/727 (29%), Positives = 355/727 (48%), Gaps = 92/727 (12%)

Query: 11  KGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFE 70
           + +Y+      I+   ++G    A+++F  M  KN  ++N M++ Y KN R+ DAR LF+
Sbjct: 44  RDTYIVKCTNSISTHMRNGHCHLALRVFDSMPYKNLFSWNLMLTGYVKNRRLVDARNLFD 103

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
            MPQ++ VSWN M++GY+ +  V EA+ +FD M   D  SW  ++  Y + G LE+AR L
Sbjct: 104 LMPQKDAVSWNVMLSGYVRSGCVDEAKLVFDNMPYKDSISWNGLLAVYVQNGRLEEARRL 163

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           F+   + E  + WN ++ GY K     +A++L D MP +N +SWN+M+SGY ++G++  A
Sbjct: 164 FESKVDWELIS-WNCLMGGYVKRKMLGDARRLFDHMPVRNAISWNTMISGYARDGDLLQA 222

Query: 191 SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRML 250
            + FE    RDV +W  M+  YV+   LD A + F ++P +  +++  M++GY +  +M 
Sbjct: 223 RRLFEESPVRDVFTWTAMVFAYVQSGMLDEARRVFDEMPGKREMAYNVMIAGYVQYKKMD 282

Query: 251 EARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAK 310
            AR LF+ MP RNV +WN +I+ Y Q G I +A  LF  M +R+ VSW  +I GY +   
Sbjct: 283 MARELFEAMPCRNVGSWNTIISGYGQNGDIAQARELFDMMTQRDCVSWAAIIAGYAQTGH 342

Query: 311 LDEARRLLDQM----------PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW 360
            ++   +L +M           +    +  A ++  V  K++    Q       +  +  
Sbjct: 343 YEKVMHMLVKMKRDGKSLNRSTFCCALSTCAGMAALVLGKQVH--GQAVKTGYDNGCLVG 400

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKR 417
           N +++ Y +CG + EA ++F +M  KDI++WNTM+AGYA+      A+ +F+ M   G +
Sbjct: 401 NALLEMYCKCGSIGEAYDVFERMQLKDIISWNTMLAGYARHGFGRQALLVFDSMKTAGFK 460

Query: 418 RNTVS---W---------NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
            + ++   W         N  +   L N         +V  T   +K +   +    S C
Sbjct: 461 PDEITMLIWSNNRLRKVGNTWVPTSLMNPLG----NTWVTSTSVTEKQEERRVNRIGSVC 516

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
                + +    + L     +   LF  N L+++Y  C  I N  +L   +         
Sbjct: 517 ITFLLVIISAYKYRL-----HACHLFPCNWLLSLYLTC--IHNVGVLLACSH-------- 561

Query: 526 SLIAGYAINGNATEAIKLFEEMVME-GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
                    G      + F  M  + G+ P+                     K + CM +
Sbjct: 562 --------TGLTDRGTEYFYSMSKDYGITPNS--------------------KHYNCMID 593

Query: 585 VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
           +     L+E                EA  +++ M  +P+A  WG LLGA R+H N +LG 
Sbjct: 594 LLGRAGLLE----------------EAHNLMRNMPFEPDAATWGALLGASRIHGNAELGE 637

Query: 645 IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQI 704
            A E +  +EP     Y LLSN++A  G+W +V K+R+ M   G QK PG SW+EV+N+I
Sbjct: 638 KAAEMVFNMEPNNAGMYVLLSNLYATLGKWVDVGKLRLKMRQLGIQKIPGYSWVEVQNKI 697

Query: 705 HTFLSGD 711
           H F  GD
Sbjct: 698 HKFTVGD 704


>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 855

 Score =  347 bits (891), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 207/651 (31%), Positives = 333/651 (51%), Gaps = 56/651 (8%)

Query: 137 KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEA 196
           + D    N ++  Y K G+  +A+K  D M  +N+VSW  M+SGY++NG+ + A   +  
Sbjct: 189 QPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQNGQENDAIIMYIQ 248

Query: 197 MEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGR 248
           M +     D +++  ++       D+D   +    +     + ++++   ++S Y R G+
Sbjct: 249 MLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQ 308

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYV-- 306
           ++ A  +F  +  +++++W +MI  + Q G   EA  LF +M  +        I G V  
Sbjct: 309 IVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFS 368

Query: 307 --RIAKLDEARRLLDQMPYK-----NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
             R     E  R +  M  K     N+ A  ++   Y +   +  A + F +I + D+V 
Sbjct: 369 ACRSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQIESPDLVS 428

Query: 360 WNVMIKGYAQCGRMDEAINLFRQM------------------------------------ 383
           WN +I  ++  G ++EAI  F QM                                    
Sbjct: 429 WNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTINQGTQIHSYII 488

Query: 384 ---VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
              ++K+    N+++  Y +   + DA  +F+++ +  N VSWNA++S  LQ++   +  
Sbjct: 489 KIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAILSACLQHKQAGEVF 548

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500
           ++F LM     K D+ T+   L  CA LA+L++G Q+H  ++KSG V D+ V N LI MY
Sbjct: 549 RLFKLMLFSENKPDNITITTILGTCAELASLEVGNQVHCFSVKSGLVVDVSVSNRLIDMY 608

Query: 501 AKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
           AKCG +++A  +F      D++SW+SLI GYA  G   EA+ LF  M   GV P+ VT++
Sbjct: 609 AKCGSLKHARDVFGSTQNPDIVSWSSLIVGYAQFGLGHEALNLFRMMKNLGVQPNEVTYL 668

Query: 561 GVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKI 620
           GVLSACSH+GLV+ G   +  M     I P  EH +CM+DLL+RAG L EA   +K M  
Sbjct: 669 GVLSACSHIGLVEEGWHFYNTMEIELGIPPTREHVSCMVDLLARAGCLYEAENFIKKMGF 728

Query: 621 KPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKV 680
            P+  +W TLL +C+ H N+ +   A E + +L+P  ++   LLSN+HA  G W EV ++
Sbjct: 729 NPDITMWKTLLASCKTHGNVDIAERAAENILKLDPSNSAALVLLSNIHASVGNWKEVARL 788

Query: 681 RVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           R  M+  G QK PG SWI VK+QIH F S D    +  +I   L+ L  Q+
Sbjct: 789 RNLMKQMGVQKVPGQSWIAVKDQIHVFFSEDNSHQQRGDIYTMLEDLWLQM 839



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 137/600 (22%), Positives = 250/600 (41%), Gaps = 104/600 (17%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR-- 75
           QN  +   GK G +++A K F  M  +N V++  MIS Y++NG+ NDA  ++ QM Q   
Sbjct: 195 QNHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQNGQENDAIIMYIQMLQSGY 254

Query: 76  --NLVSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKARE 129
             + +++ S+I        +   R+L   + +      L +   +I+ YTR G++  A +
Sbjct: 255 FPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASD 314

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           +F ++  K D   W +M+ G+ ++G   EA  L   M  +     N  + G   +    L
Sbjct: 315 VFTMISTK-DLISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSL 373

Query: 190 ASKFFEAMEE---------RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
               F              R+V +   + D Y +   L SA + F +I   ++VSW  ++
Sbjct: 374 LEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQIESPDLVSWNAII 433

Query: 241 SGYARNGRMLEARRLFDQM---------------------PI------------------ 261
           + ++ +G + EA   F QM                     P+                  
Sbjct: 434 AAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTINQGTQIHSYIIKIGLD 493

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPER-NPVSWTTMIDGYVRIAKLDEARRLLDQ 320
           +     N+++  Y +   + +A  +F ++ E  N VSW  ++   ++  +  E  RL   
Sbjct: 494 KEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAILSACLQHKQAGEVFRLFKL 553

Query: 321 MPYK-----NIAAQTAMISGYVQNKRMDEANQIFD---KIG-THDVVCWNVMIKGYAQCG 371
           M +      NI   T ++    +   ++  NQ+     K G   DV   N +I  YA+CG
Sbjct: 554 MLFSENKPDNITI-TTILGTCAELASLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCG 612

Query: 372 RMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFL 431
            +  A ++F    N DIV+W+++I GYAQ             +G                
Sbjct: 613 SLKHARDVFGSTQNPDIVSWSSLIVGYAQF-----------GLGH--------------- 646

Query: 432 QNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHH-LAIKSGYVNDL 490
                 +AL +F +M   G + +  T    LSAC+H+  ++ G   ++ + I+ G     
Sbjct: 647 ------EALNLFRMMKNLGVQPNEVTYLGVLSACSHIGLVEEGWHFYNTMEIELGIPPTR 700

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
              + ++ + A+ G +  AE   K    +P D+  W +L+A    +GN   A +  E ++
Sbjct: 701 EHVSCMVDLLARAGCLYEAENFIKKMGFNP-DITMWKTLLASCKTHGNVDIAERAAENIL 759


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  347 bits (891), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 225/736 (30%), Positives = 375/736 (50%), Gaps = 45/736 (6%)

Query: 17  NQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG---RVNDARKLF--EQ 71
            Q  K + L     + E  ++   M +K     N +I+A  + G    +N A   F  ++
Sbjct: 21  TQKPKNSSLQTCKTLIELKQLHCNMLKKGVFNINKLIAACVQMGTHESLNYALNAFKEDE 80

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF-----RPDLFSWALMITCYTRKGELEK 126
             + +L + N++I GY  +   KEA  ++  M       PD F++  +++  ++     +
Sbjct: 81  GTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSE 140

Query: 127 ARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK 183
             ++  ++      +D    N+++  YA  G  +  +K+ D M  +N+VSW S+++GY+ 
Sbjct: 141 GVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSV 200

Query: 184 -NGEMHLASKFFEAME---ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV-- 237
            N        FFE +E   E + V+    +    +L DL+   K    + E  V S    
Sbjct: 201 VNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLV 260

Query: 238 --TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
              +L  Y + G M   R +FD+   +N+V +N +++ YVQ G   E   +  EM ++  
Sbjct: 261 VNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQ 320

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
                  D    ++ +    +L D    K+  A       YV    ++  + I       
Sbjct: 321 RP-----DKVTMLSTIAACAQLGDLSVGKSSHA-------YVFRNGLERLDNI------- 361

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMG 415
                N +I  Y +CG+ + A  +F  M NK +VTWN++IAG  +  +++ A++IF EM 
Sbjct: 362 ----SNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEM- 416

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
              N VSWN +I   +Q     +A+ +   M  +G K D  T+    SAC +L AL L +
Sbjct: 417 PESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAK 476

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
            I+    K+    D+ +G +L+ M+++CG   NA  +F++ +  DV +W + I   A+ G
Sbjct: 477 WIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEG 536

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHY 595
           NA  AI+LF+EM+ + V  D   F+ +L+A SH G VD G +LF  M +++ + P + HY
Sbjct: 537 NAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHY 596

Query: 596 ACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEP 655
            CM+DLL RAG L+EAF+++K M IKPN  IWG+ L ACR H+N++    A EK+++L P
Sbjct: 597 GCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADEKITQLAP 656

Query: 656 QKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQC 715
           +K   + LLSN++A AG+W++V +VR+ M+  G QK  G S IEV   I  F SGD    
Sbjct: 657 EKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGFQKVAGSSSIEVHGLIREFTSGDESHT 716

Query: 716 RTAEICNTLKTLAAQI 731
             A+I   L+ +  +I
Sbjct: 717 ENAQIGLMLQEINCRI 732



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 109/480 (22%), Positives = 211/480 (43%), Gaps = 67/480 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM-- 72
           +F  N  I      G+V+   K+F +M ++N V++ S+I+ Y+      +A  LF +M  
Sbjct: 157 LFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVE 216

Query: 73  --PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITC----YTRKGELEK 126
              + N V+    I+       ++  +++ + M    + S  L++      Y + G++  
Sbjct: 217 VGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYA 276

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSMLSGYT 182
            RE+FD   +K +   +N +++ Y + G   E   +LD M  K    + V+  S ++   
Sbjct: 277 VREIFDEFSDK-NLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACA 335

Query: 183 KNGEMHL-----ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV 237
           + G++ +     A  F   +E  D +S N ++D Y++    ++A K F  +  + VV+W 
Sbjct: 336 QLGDLSVGKSSHAYVFRNGLERLDNIS-NAIIDMYMKCGKREAACKVFDSMSNKTVVTWN 394

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP------ 291
           ++++G  R+G +  A R+F +MP  N+V+WN MI A VQ    EEA  L  EM       
Sbjct: 395 SLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKG 454

Query: 292 ----------------------------ERNPVS-----WTTMIDGYVRIAKLDEARRLL 318
                                       E+N +       T ++D + R      A R+ 
Sbjct: 455 DRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVF 514

Query: 319 DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV----VCWNVMIKGYAQCGRMD 374
           + M  ++++A TA I           A ++FD++   DV      +  ++  ++  G +D
Sbjct: 515 ENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVD 574

Query: 375 EAINLFRQM-----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
           +   LF  M     V+  IV +  M+    +   +++A  + + M  + N V W + ++ 
Sbjct: 575 QGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAA 634



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 124/290 (42%), Gaps = 42/290 (14%)

Query: 7   SIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDAR 66
           S+ NK   V   N  I  L + G +E A++IF +M + N V++N+MI A  +     +A 
Sbjct: 384 SMSNK--TVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAI 441

Query: 67  KLFEQMPQRNLVSWN-SMIA-----GYLHN-DKVKEARELFDKM-FRPDLFSWALMITCY 118
            L  +M  + +     +M+      GYL   D  K      +K     D+     ++  +
Sbjct: 442 DLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMF 501

Query: 119 TRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS----W 174
           +R G+   A  +F+ +  K D + W A +   A  GN   A +L D M  +++ +    +
Sbjct: 502 SRCGDPLNAMRVFENM-EKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVF 560

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
            ++L+ ++  G +    + F AME+   VS                        P+  +V
Sbjct: 561 VALLTAFSHGGYVDQGRQLFWAMEKIHGVS------------------------PQ--IV 594

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEA 283
            +  M+    R G + EA  L   MPI+ N V W + +AA  +   +E A
Sbjct: 595 HYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFA 644


>gi|125561353|gb|EAZ06801.1| hypothetical protein OsI_29045 [Oryza sativa Indica Group]
          Length = 696

 Score =  347 bits (891), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 207/647 (31%), Positives = 328/647 (50%), Gaps = 63/647 (9%)

Query: 143 WNAMVAGYAKIG--NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER 200
           WN ++  Y++        A+++ D +P ++ VSWN++L+ +  +G    A +   AM  +
Sbjct: 28  WNQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAHAASGAHPEAWRLLRAMHAQ 87

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPE--------QNVVSWVTMLSGYARNGRMLEA 252
            + S    L   +    +        ++           NV +   +L  YA+ GR+ +A
Sbjct: 88  GLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDA 147

Query: 253 RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-------SWTTMIDGY 305
           R++FD MP RN V+WNA+IA Y + G +  A  LF+EM     V       S  T ++G 
Sbjct: 148 RQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLVPDEATFASLLTAVEGP 207

Query: 306 VRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG-THDVVCWNVMI 364
                     +++       +    A I+ Y Q   + ++ +IFD IG   D++ WN M+
Sbjct: 208 SCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDLISWNAML 267

Query: 365 KGYAQCGRMDEAINLFRQM-----VNKDIVTW---------------------------- 391
             Y   G  DEA+  F +M     V+ D+ ++                            
Sbjct: 268 GAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSA 327

Query: 392 --------NTMIAGYAQIRQ---MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
                   N +IA Y +  +   M+DA K F  +   ++TVSWN++++G+ Q+    DAL
Sbjct: 328 LEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSL-VLKDTVSWNSMLTGYSQHGLSADAL 386

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500
           K F  M  E  + D    + AL + + LA LQLG+QIH L I SG+ ++ FV +SLI MY
Sbjct: 387 KFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMY 446

Query: 501 AKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
           +K G I +A   F++AD    + WN++I GYA +G A     LF EM+      D +TF+
Sbjct: 447 SKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFV 506

Query: 561 GVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKI 620
           G++++CSH GLVD G ++   M   Y +   +EHYAC +DL  RAG+LD+A +++  M  
Sbjct: 507 GLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAKKLIDSMPF 566

Query: 621 KPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKV 680
           +P+A +W TLLGACR+H N++L       L   EP++ S Y LLS+M++  G W +   V
Sbjct: 567 EPDAMVWMTLLGACRIHGNVELASDVASHLFVAEPRQHSTYVLLSSMYSGLGMWSDRATV 626

Query: 681 RVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
           +  M+  G  K PG S IEVKN++H+F + D    +  EI   L+ L
Sbjct: 627 QRVMKKRGLSKVPGWSLIEVKNEVHSFNAEDKSHPKMDEIYEMLRVL 673



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 140/560 (25%), Positives = 262/560 (46%), Gaps = 74/560 (13%)

Query: 49  YNSMISAYAKNGR--VNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP 106
           +N +++AY+++    +  AR++F+++P+R+ VSWN+++A +  +    EA  L   M   
Sbjct: 28  WNQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAHAASGAHPEAWRLLRAMHAQ 87

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPN-------KEDTACWNAMVAGYAKIGNYNEA 159
            L S    +    R   + +   +   L +         +    +A++  YAK G   +A
Sbjct: 88  GLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDA 147

Query: 160 KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLD 219
           +++ D MP +N VSWN++++GYT++G+M  A + F  ME   +V         +   +  
Sbjct: 148 RQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLVPDEATFASLLTAVEGP 207

Query: 220 SAWKFFQ---KIPEQNVVSWVTML----SGYARNGRMLEARRLFDQM-PIRNVVAWNAMI 271
           S +   Q   KI +      +T+L    + Y++ G + ++RR+FD +  IR++++WNAM+
Sbjct: 208 SCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDLISWNAML 267

Query: 272 AAYVQRGQIEEAARLFIEMPERNPV-----SWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
            AY   G  +EA + F+ M + + V     S+T++I         D   R++  +  K+ 
Sbjct: 268 GAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSA 327

Query: 327 A--------AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
                    A  AM + Y +N  M++A + F+ +   D V WN M+ GY+Q G   +A+ 
Sbjct: 328 LEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALK 387

Query: 379 LFRQMVNKDIVT---------------------------------------WNTMIAGYA 399
            FR M ++++ T                                        +++I  Y+
Sbjct: 388 FFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYS 447

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
           +   +DDA K FEE  K  ++V WNA+I G+ Q+    +   +F  M Q     DH T  
Sbjct: 448 KSGIIDDARKSFEEADK-SSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFV 506

Query: 460 CALSACAHLAALQLGRQI-HHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
             +++C+H   +  G +I + +  K G    +      + +Y + G++  A+ L  D+ P
Sbjct: 507 GLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAKKLI-DSMP 565

Query: 519 V--DVISWNSLIAGYAINGN 536
              D + W +L+    I+GN
Sbjct: 566 FEPDAMVWMTLLGACRIHGN 585



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 197/409 (48%), Gaps = 46/409 (11%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           N    ++++  YAK GRV DAR++F+ MP+RN VSWN++IAGY  +  +  A ELF +M 
Sbjct: 127 NVFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEME 186

Query: 105 R----PDLFSWALMIT------CYTR---KGELEKARELFDLLPNKEDTACWNAMVAGYA 151
           R    PD  ++A ++T      C+      G++ K      L          NA +  Y+
Sbjct: 187 REGLVPDEATFASLLTAVEGPSCFLMHQLHGKIVKYGSALGL-------TVLNAAITAYS 239

Query: 152 KIGNYNEAKKLLDAMPS-KNIVSWNSMLSGYTKNGEMHLASKFFEAMEER-----DVVSW 205
           + G+  +++++ D +   ++++SWN+ML  YT NG    A KFF  M +      D+ S+
Sbjct: 240 QCGSLKDSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSF 299

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT--------MLSGYARNGRMLEARRLFD 257
             ++    E    D   +    +  ++ +  VT        M + Y  N  M +A + F+
Sbjct: 300 TSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFN 359

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN----PVSWTTMIDGYVRIAKLDE 313
            + +++ V+WN+M+  Y Q G   +A + F  M   N      +++  +     +A L  
Sbjct: 360 SLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQL 419

Query: 314 ARRLLDQMPYKNIAA----QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ 369
            +++   + +   A+     +++I  Y ++  +D+A + F++      V WN MI GYAQ
Sbjct: 420 GKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQ 479

Query: 370 CGRMDEAINLFRQMVNK----DIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            G+ +    LF +M+ +    D +T+  +I   +    +D+  +I   M
Sbjct: 480 HGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTM 528



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 105/458 (22%), Positives = 203/458 (44%), Gaps = 53/458 (11%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  +  +    K GRV +A ++F  M ++NTV++N++I+ Y ++G +  A +LF +M +
Sbjct: 128 VFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMER 187

Query: 75  RNLVSWNSMIAGY--------------LHNDKVKEARELFDKMFRPDLFSWALMITCYTR 120
             LV   +  A                LH   VK    L        L      IT Y++
Sbjct: 188 EGLVPDEATFASLLTAVEGPSCFLMHQLHGKIVKYGSAL-------GLTVLNAAITAYSQ 240

Query: 121 KGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK-----NIVSWN 175
            G L+ +R +FD + +  D   WNAM+  Y   G  +EA K    M  +     ++ S+ 
Sbjct: 241 CGSLKDSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFT 300

Query: 176 SMLSGYTKNGEMHLASKFFEAMEERDVVS-----WNLMLDGYVELDD---LDSAWKFFQK 227
           S++S  +++G      +    +  +  +       N ++  Y   ++   ++ A+K F  
Sbjct: 301 SIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNS 360

Query: 228 IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMI-----AAYVQRG 278
           +  ++ VSW +ML+GY+++G   +A + F  M   NV     A++A +      A +Q G
Sbjct: 361 LVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLG 420

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
           +      +       + VS +++I  Y +   +D+AR+  ++    +     AMI GY Q
Sbjct: 421 KQIHGLVIHSGFASNDFVS-SSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQ 479

Query: 339 NKRMDEANQIFDKI----GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT---- 390
           + + +  + +F+++       D + +  +I   +  G +DE   +   M  K  V     
Sbjct: 480 HGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRME 539

Query: 391 -WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
            +   +  Y +  Q+D A K+ + M    + + W  L+
Sbjct: 540 HYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLL 577


>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score =  347 bits (891), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 199/561 (35%), Positives = 310/561 (55%), Gaps = 27/561 (4%)

Query: 182 TKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWV 237
           + +G++H A   F+  E  +   WN M+ GY + +     + FF+++     E +  S+V
Sbjct: 97  SDSGDIHYAHLIFDQTELPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFV 156

Query: 238 TMLSGYARNGRMLEA--------RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIE 289
             L    +    +          +R FD     ++   N +I  YV+ G +  A ++F E
Sbjct: 157 FALKACGQFAEKIVGMAVHSVIWKRGFDS----DLFVQNGLIQNYVETGCLGFARQMFDE 212

Query: 290 MPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI----AAQTAMISGYVQNKRMDEA 345
              ++ V+WTTMI+GY R   LDEA  L + M   ++        A++S   Q    +  
Sbjct: 213 SSVKDVVTWTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMG 272

Query: 346 NQIFDKIGTHDVVC----WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQI 401
             + + I   D+ C     N M+  Y +CG +  A  +F  M  +D+ +W +++ GYA+ 
Sbjct: 273 KTLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKN 332

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE-GKKADHSTLAC 460
             +  A K+F+EM   RN VSWNA+I+G+ QN   ++AL++F  M    G      TL C
Sbjct: 333 GDLGSARKLFDEM-PERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVC 391

Query: 461 ALSACAHLAALQLGRQIHHLAI-KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
            LSA   L  L++G++IH   + K G    L + N+++ MYAKCG I  A  LF      
Sbjct: 392 VLSASGQLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEK 451

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
           +++SWNS+I+ YA  G+A +A+ LF++M+  G+ PD +TFIGVLSACS+ G V  G   F
Sbjct: 452 NLVSWNSMISAYASYGHAKKALTLFDQMIGSGLKPDHITFIGVLSACSYGGFVSEGQAHF 511

Query: 580 ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
           E M   + +EP  EHYACM+DLLSR G L EA+E++  M ++ + G WG LL ACR H N
Sbjct: 512 ESMENCFGVEPKREHYACMVDLLSRVGLLKEAYELISRMPMEASEGGWGALLDACRKHGN 571

Query: 640 IKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
           +++ ++A EKL EL+P+ +  Y+LL+N+ A+  +W +V  VR  M   G +K PG S IE
Sbjct: 572 VEMAKLAGEKLLELDPEDSGIYSLLANICADGKKWKDVRMVRRMMRERGVKKVPGHSLIE 631

Query: 700 VKNQIHTFLSGDPKQCRTAEI 720
           ++ + H FL  D    R++EI
Sbjct: 632 IEGKFHEFLVADTSHTRSSEI 652



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/391 (27%), Positives = 177/391 (45%), Gaps = 58/391 (14%)

Query: 55  AYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR--------- 105
           A + +G ++ A  +F+Q    N   WN+MI GY   +        F +M R         
Sbjct: 95  ALSDSGDIHYAHLIFDQTELPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGS 154

Query: 106 ------------------------------PDLFSWALMITCYTRKGELEKARELFDLLP 135
                                          DLF    +I  Y   G L  AR++FD   
Sbjct: 155 FVFALKACGQFAEKIVGMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESS 214

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLAS 191
            K D   W  M+ GYA+    +EA  L ++M S ++    V+  ++LS  ++ G+  +  
Sbjct: 215 VK-DVVTWTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGK 273

Query: 192 KFFEAMEERDVVS----WNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
              E +  +D+       N MLD YV+   L +A + F  +  ++V SW ++L+GYA+NG
Sbjct: 274 TLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNG 333

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM-------PERNPVSWTT 300
            +  AR+LFD+MP RN+V+WNAMIA Y Q  Q  EA  LF  M       P  + +    
Sbjct: 334 DLGSARKLFDEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVL 393

Query: 301 MIDGYVRIAKLDEARRL--LDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV 357
              G +   ++ +      ++++  + ++  + A++  Y +   +D A ++F  +   ++
Sbjct: 394 SASGQLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNL 453

Query: 358 VCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
           V WN MI  YA  G   +A+ LF QM+   +
Sbjct: 454 VSWNSMISAYASYGHAKKALTLFDQMIGSGL 484



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 159/292 (54%), Gaps = 23/292 (7%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----R 105
           N +I  Y + G +  AR++F++   +++V+W +MI GY  N+ + EA  LF+ M     +
Sbjct: 191 NGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNSMLSSDVK 250

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTAC----WNAMVAGYAKIGNYNEAKK 161
           P+  +   +++  ++KG+ E  + L + +  ++D  C     NAM+  Y K G    A++
Sbjct: 251 PNEVTMIALLSACSQKGDSEMGKTLHEHI-RRKDITCSLNLLNAMLDMYVKCGCLTTARE 309

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA 221
           + + M  +++ SW S+L+GY KNG++  A K F+ M ER++VSWN M+ GY +      A
Sbjct: 310 IFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNIVSWNAMIAGYSQNSQPMEA 369

Query: 222 WKFFQK-------IPEQNVVSWVTMLSGYARNGRMLEARRL----FDQMPIR-NVVAWNA 269
            + F         +P ++ +  V +LS   + G +   + +     +++ I+ +++  NA
Sbjct: 370 LELFHNMVDVVGLVPTEDTL--VCVLSASGQLGCLEMGQEIHCNHVNKIGIQVSLILKNA 427

Query: 270 MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           ++  Y + G I+ AA+LF  MPE+N VSW +MI  Y       +A  L DQM
Sbjct: 428 VMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAYASYGHAKKALTLFDQM 479



 Score =  135 bits (340), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 176/373 (47%), Gaps = 69/373 (18%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F QN  I    ++G +  A ++F + S K+ VT+ +MI+ YA+N  +++A  LF  M
Sbjct: 185 SDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNSM 244

Query: 73  ----PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWAL-----MITCYTRKGE 123
                + N V+  ++++        +  + L + + R D+ + +L     M+  Y + G 
Sbjct: 245 LSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDI-TCSLNLLNAMLDMYVKCGC 303

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK 183
           L  ARE+F+ +  + D   W +++ GYAK G+   A+KL D MP +NIVSWN+M++GY++
Sbjct: 304 LTTAREIFNNM-ERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNIVSWNAMIAGYSQ 362

Query: 184 NGEMHLASKFFEAMEERDVVSW-------------------------------------- 205
           N +   A + F  M   DVV                                        
Sbjct: 363 NSQPMEALELFHNM--VDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHCNHVNKIGIQV 420

Query: 206 -----NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
                N ++D Y +   +D+A K F  +PE+N+VSW +M+S YA  G   +A  LFDQM 
Sbjct: 421 SLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAYASYGHAKKALTLFDQMI 480

Query: 261 IRNV----VAWNAMIAA-----YVQRGQ--IEEAARLFIEMPERNPVSWTTMIDGYVRIA 309
              +    + +  +++A     +V  GQ   E     F   P+R    +  M+D   R+ 
Sbjct: 481 GSGLKPDHITFIGVLSACSYGGFVSEGQAHFESMENCFGVEPKRE--HYACMVDLLSRVG 538

Query: 310 KLDEARRLLDQMP 322
            L EA  L+ +MP
Sbjct: 539 LLKEAYELISRMP 551



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 148/290 (51%), Gaps = 23/290 (7%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K G +  A +IF+ M +++  ++ S+++ YAKNG +  ARKLF++MP+RN+VSWN+MIAG
Sbjct: 300 KCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNIVSWNAMIAG 359

Query: 87  YLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFDLLPNK---- 137
           Y  N +  EA ELF  M       P   +   +++   + G LE  +E+     NK    
Sbjct: 360 YSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHCNHVNKIGIQ 419

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
                 NA++  YAK G+ + A KL  +MP KN+VSWNSM+S Y   G    A   F+ M
Sbjct: 420 VSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAYASYGHAKKALTLFDQM 479

Query: 198 ----EERDVVSWNLMLD-----GYVELDD--LDSAWKFFQKIPEQNVVSWVTMLSGYARN 246
                + D +++  +L      G+V       +S    F   P++    +  M+   +R 
Sbjct: 480 IGSGLKPDHITFIGVLSACSYGGFVSEGQAHFESMENCFGVEPKRE--HYACMVDLLSRV 537

Query: 247 GRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
           G + EA  L  +MP+  +   W A++ A  + G +E A     ++ E +P
Sbjct: 538 GLLKEAYELISRMPMEASEGGWGALLDACRKHGNVEMAKLAGEKLLELDP 587



 Score = 72.4 bits (176), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 78/163 (47%), Gaps = 13/163 (7%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           +N  +    K G ++ A K+F  M +KN V++NSMISAYA  G    A  LF+QM    L
Sbjct: 425 KNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAYASYGHAKKALTLFDQMIGSGL 484

Query: 78  ----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKAR 128
               +++  +++   +   V E +  F+ M       P    +A M+   +R G L++A 
Sbjct: 485 KPDHITFIGVLSACSYGGFVSEGQAHFESMENCFGVEPKREHYACMVDLLSRVGLLKEAY 544

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK----KLLDAMP 167
           EL   +P +     W A++    K GN   AK    KLL+  P
Sbjct: 545 ELISRMPMEASEGGWGALLDACRKHGNVEMAKLAGEKLLELDP 587


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 209/664 (31%), Positives = 348/664 (52%), Gaps = 55/664 (8%)

Query: 123 ELEKARELFDLLPNKEDTACW--NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG 180
           +LE  R++ D +        +  N +V  Y K G+   A+   DA+  KN  SW SML+ 
Sbjct: 39  DLESVRQIHDRISGAASANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTA 98

Query: 181 YTKNGEMHLASKFFEAME-ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-----EQNVV 234
           Y +NG    A   ++ M+ + + V +  +L     ++ L+       +I      + +V+
Sbjct: 99  YAQNGHYRAALDLYKRMDLQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVI 158

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMP-IRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-E 292
              ++L+ YA+ G + +A+RLF++M   R+V +WNAMIAAY Q G  EEA RL+ +M  E
Sbjct: 159 LENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVE 218

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK----NIAAQTAMISGYVQNKRMDEANQI 348
            +  ++T+++     +  LD+ R++   +  +    +++ Q A+++ Y + K +D+A +I
Sbjct: 219 PSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKI 278

Query: 349 FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMI--------- 395
           F ++   DVV W+ MI  +A+    DEAI  + +M    V  +  T+ +++         
Sbjct: 279 FQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDL 338

Query: 396 -AG-------------------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
            AG                         Y     +D+A  +F+++  R   + W  LI G
Sbjct: 339 RAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGL-WTVLIGG 397

Query: 430 FLQNEFHLDALKIFVLMTQEGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
           + +       L+++  M    K  A     +C +SACA L A    RQ H      G ++
Sbjct: 398 YSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMIS 457

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           D  +  SL+ MY++ G +++A  +F      D ++W +LIAGYA +G    A+ L++EM 
Sbjct: 458 DFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEME 517

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
           +EG  P  +TF+ VL ACSH GL + G +LF  +   YA+ P + HY+C+IDLLSRAGRL
Sbjct: 518 LEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRL 577

Query: 609 DEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMH 668
            +A E++  M ++PN   W +LLGA R+H+++K    A  ++++L+P   + Y LLSN+H
Sbjct: 578 SDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVH 637

Query: 669 AEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLA 728
           A  G    +  VR +M   G +K+ G SWIEV +QIH F  GD    R  EI   L+ L+
Sbjct: 638 AVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLS 697

Query: 729 AQIR 732
            +I+
Sbjct: 698 PKIK 701



 Score =  185 bits (470), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 148/588 (25%), Positives = 284/588 (48%), Gaps = 44/588 (7%)

Query: 9   GNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKL 68
           G   + VF  N+ +   GK G V  A   F  +++KN  ++ SM++AYA+NG    A  L
Sbjct: 52  GAASANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDL 111

Query: 69  FEQMP-QRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKG 122
           +++M  Q N V + +++      + ++E + +  ++      + D+     ++T Y + G
Sbjct: 112 YKRMDLQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCG 171

Query: 123 ELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKL---LDAMPSKNIVSWNSMLS 179
            LE A+ LF+ +  +   + WNAM+A YA+ G++ EA +L   +D  PS  + ++ S+LS
Sbjct: 172 SLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVEPS--VRTFTSVLS 229

Query: 180 GYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
             +  G +    K    +  R    D+   N +L  Y     LD A K FQ++P ++VVS
Sbjct: 230 ACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVS 289

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
           W  M++ +A      EA   + +M +     N   + +++ A    G +  A R   +  
Sbjct: 290 WSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDL-RAGRAVHDQI 348

Query: 292 ERNP-----VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEAN 346
             N      V+ T ++D Y     LDEAR L DQ+  ++    T +I GY +        
Sbjct: 349 LGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVL 408

Query: 347 QIFDKI-GTHDV----VCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAG 397
           +++ ++  T  V    + ++ +I   A  G   +A      +    +  D V   +++  
Sbjct: 409 ELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNM 468

Query: 398 YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHST 457
           Y++   ++ A ++F++M   R+T++W  LI+G+ ++  H  AL ++  M  EG +    T
Sbjct: 469 YSRWGNLESARQVFDKMSS-RDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELT 527

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN--SLITMYAKCGRIQNAELLFKD 515
               L AC+H    + G+Q+  ++I+S Y     + +   +I + ++ GR+ +AE L  +
Sbjct: 528 FMVVLYACSHAGLQEQGKQL-FISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELI-N 585

Query: 516 ADPVDV--ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP-DPVTFI 560
           A PV+   ++W+SL+    I+ +   A     ++    + P DP +++
Sbjct: 586 AMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITK--LDPVDPASYV 631


>gi|255558480|ref|XP_002520265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540484|gb|EEF42051.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 681

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 204/638 (31%), Positives = 319/638 (50%), Gaps = 55/638 (8%)

Query: 114 MITCYTR-KGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV 172
           ++  Y R  G +  A  LFD +P + +   WN M+ GY ++G+   + KL D MP KN  
Sbjct: 47  LLQMYARCGGTMTDAHNLFDEMPER-NCFSWNTMIEGYMRVGDKERSLKLFDLMPQKNDY 105

Query: 173 SWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI---P 229
           SWN ++SG+ K GE+ +A K F  M  R+ V+WN M+ GY        A   F+++   P
Sbjct: 106 SWNVVISGFAKAGELDVAKKLFNEMPRRNGVAWNSMIHGYARNGFAREAVGLFKELNSNP 165

Query: 230 EQNVVSWVTMLS---------GYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQI 280
            +       +L+         G    G+ + AR L D + + +V+  +++I  Y + G +
Sbjct: 166 LEKSCGDTFVLASVIGACADLGAIEYGKQVHARILMDDVELDSVLI-SSLINLYAKCGHL 224

Query: 281 EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340
           + A  +   M E +  S + +I GY    ++ +A R+             ++ISGYV N 
Sbjct: 225 DTANYVLKMMDEVDDFSLSALIMGYANCGRMSDAVRIFRTKSNPCFVVWNSLISGYVNNH 284

Query: 341 RMDEANQIFD--------------------------------------KIGTHD-VVCWN 361
              +A  + +                                      K+G  D V+  +
Sbjct: 285 EEMKAFALVNEMKNNRVQVDSSTITVILSACSSTGNAQYAKQMHGYVCKVGLIDSVIVAS 344

Query: 362 VMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
             I  Y++C   ++A  LF ++   D V  N+MI  Y    ++ DA  IFE M   ++ +
Sbjct: 345 AFIDAYSKCRNPNDACKLFSELKAYDTVLLNSMITAYCNCGRIRDAKNIFETM-PSKSLI 403

Query: 422 SWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLA 481
           SWN++I G  QN + L+AL +F  M +   + D  +LA  +SACA +++L+LG Q+   A
Sbjct: 404 SWNSIIVGLAQNAYPLEALDVFGKMNKLDLRMDRFSLASVISACACISSLELGEQVFARA 463

Query: 482 IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
           I +G  +D  V  SL+  Y KCG I+N   LF      D +SWNS++ GYA NG   E +
Sbjct: 464 IITGLESDQAVSTSLVDFYCKCGFIENGRKLFDSMIKTDEVSWNSMLMGYATNGYGLETL 523

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601
            LF EM   G+ P  +TF GVLSAC H GLV+ G K F  M   Y I+P +EHY+CM+DL
Sbjct: 524 TLFNEMKQAGLRPTDITFTGVLSACDHCGLVEEGRKWFNIMKYDYHIDPGIEHYSCMVDL 583

Query: 602 LSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCY 661
            +RAG L EA  +V+ M  + +  +W ++L  C  H +  LG+   +++ +L P+ +S Y
Sbjct: 584 FARAGCLKEALNLVEHMPFEADCSMWSSVLRGCVAHGDKDLGKKVAQQIIQLNPESSSAY 643

Query: 662 ALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
             LS + A +G W+    VR  M     +K PG SW +
Sbjct: 644 VQLSGIFATSGDWESSALVRKIMTEKQVKKHPGFSWAD 681



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 137/502 (27%), Positives = 227/502 (45%), Gaps = 81/502 (16%)

Query: 175 NSMLSGYTK-NGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV 233
           N +L  Y +  G M  A   F+ M ER+  SWN M++GY+ + D + + K F  +P++N 
Sbjct: 45  NRLLQMYARCGGTMTDAHNLFDEMPERNCFSWNTMIEGYMRVGDKERSLKLFDLMPQKND 104

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
            SW  ++SG+A+ G +  A++LF++MP RN VAWN+MI  Y + G   EA  LF E+   
Sbjct: 105 YSWNVVISGFAKAGELDVAKKLFNEMPRRNGVAWNSMIHGYARNGFAREAVGLFKEL-NS 163

Query: 294 NPVS--------WTTMID-----GYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340
           NP+           ++I      G +   K   AR L+D +   ++   +++I+ Y +  
Sbjct: 164 NPLEKSCGDTFVLASVIGACADLGAIEYGKQVHARILMDDVELDSVLI-SSLINLYAKCG 222

Query: 341 RMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQ 400
            +D AN +   +   D    + +I GYA CGRM +A+ +FR   N   V WN++I+GY  
Sbjct: 223 HLDTANYVLKMMDEVDDFSLSALIMGYANCGRMSDAVRIFRTKSNPCFVVWNSLISGYVN 282

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
             +   A  +  EM   R  V                                D ST+  
Sbjct: 283 NHEEMKAFALVNEMKNNRVQV--------------------------------DSSTITV 310

Query: 461 ALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG--------------------------- 493
            LSAC+     Q  +Q+H    K G ++ + V                            
Sbjct: 311 ILSACSSTGNAQYAKQMHGYVCKVGLIDSVIVASAFIDAYSKCRNPNDACKLFSELKAYD 370

Query: 494 ----NSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549
               NS+IT Y  CGRI++A+ +F+      +ISWNS+I G A N    EA+ +F +M  
Sbjct: 371 TVLLNSMITAYCNCGRIRDAKNIFETMPSKSLISWNSIIVGLAQNAYPLEALDVFGKMNK 430

Query: 550 EGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLD 609
             +  D  +   V+SAC+ +  ++ G ++F     +  +E        ++D   + G ++
Sbjct: 431 LDLRMDRFSLASVISACACISSLELGEQVFA-RAIITGLESDQAVSTSLVDFYCKCGFIE 489

Query: 610 EAFEMVKGMKIKPNAGIWGTLL 631
              ++   M IK +   W ++L
Sbjct: 490 NGRKLFDSM-IKTDEVSWNSML 510



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 143/562 (25%), Positives = 268/562 (47%), Gaps = 31/562 (5%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F+ N  I    + G  E ++K+F  M QKN  ++N +IS +AK G ++ A+KLF +MP+R
Sbjct: 74  FSWNTMIEGYMRVGDKERSLKLFDLMPQKNDYSWNVVISGFAKAGELDVAKKLFNEMPRR 133

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKM-FRP------DLFSWALMITCYTRKGELEKAR 128
           N V+WNSMI GY  N   +EA  LF ++   P      D F  A +I      G +E  +
Sbjct: 134 NGVAWNSMIHGYARNGFAREAVGLFKELNSNPLEKSCGDTFVLASVIGACADLGAIEYGK 193

Query: 129 ELFD--LLPNKE-DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
           ++    L+ + E D+   ++++  YAK G+ + A  +L  M   +  S ++++ GY   G
Sbjct: 194 QVHARILMDDVELDSVLISSLINLYAKCGHLDTANYVLKMMDEVDDFSLSALIMGYANCG 253

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLS 241
            M  A + F        V WN ++ GYV   +   A+    ++    V     +   +LS
Sbjct: 254 RMSDAVRIFRTKSNPCFVVWNSLISGYVNNHEEMKAFALVNEMKNNRVQVDSSTITVILS 313

Query: 242 GYARNGRMLEARRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
             +  G    A+++   +     I +V+  +A I AY +     +A +LF E+   + V 
Sbjct: 314 ACSSTGNAQYAKQMHGYVCKVGLIDSVIVASAFIDAYSKCRNPNDACKLFSELKAYDTVL 373

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV 357
             +MI  Y    ++ +A+ + + MP K++ +  ++I G  QN    EA  +F K+   D+
Sbjct: 374 LNSMITAYCNCGRIRDAKNIFETMPSKSLISWNSIIVGLAQNAYPLEALDVFGKMNKLDL 433

Query: 358 VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTW--------NTMIAGYAQIRQMDDAVK 409
                 +           ++ L  Q+  + I+T          +++  Y +   +++  K
Sbjct: 434 RMDRFSLASVISACACISSLELGEQVFARAIITGLESDQAVSTSLVDFYCKCGFIENGRK 493

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           +F+ M K  + VSWN+++ G+  N + L+ L +F  M Q G +    T    LSAC H  
Sbjct: 494 LFDSMIK-TDEVSWNSMLMGYATNGYGLETLTLFNEMKQAGLRPTDITFTGVLSACDHCG 552

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGN--SLITMYAKCGRIQNAELLFKDAD-PVDVISWNS 526
            ++ GR+  ++ +K  Y  D  + +   ++ ++A+ G ++ A  L +      D   W+S
Sbjct: 553 LVEEGRKWFNI-MKYDYHIDPGIEHYSCMVDLFARAGCLKEALNLVEHMPFEADCSMWSS 611

Query: 527 LIAGYAINGNATEAIKLFEEMV 548
           ++ G   +G+     K+ ++++
Sbjct: 612 VLRGCVAHGDKDLGKKVAQQII 633



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 107/227 (47%), Gaps = 20/227 (8%)

Query: 469 AALQLGRQIHHLAIKSGYVN-DLFVGNSLITMYAKC-GRIQNAELLFKDADPVDVISWNS 526
           +++  G+Q+H L +K G +N  + + N L+ MYA+C G + +A  LF +    +  SWN+
Sbjct: 19  SSIHQGKQLHLLFLKKGLINATVSLANRLLQMYARCGGTMTDAHNLFDEMPERNCFSWNT 78

Query: 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVY 586
           +I GY   G+   ++KLF+ M  +    +  ++  V+S  +  G +D   KLF  M    
Sbjct: 79  MIEGYMRVGDKERSLKLFDLMPQK----NDYSWNVVISGFAKAGELDVAKKLFNEMPRRN 134

Query: 587 AIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKP------NAGIWGTLLGACRMHQNI 640
            +      +  MI   +R G   EA  + K +   P      +  +  +++GAC     I
Sbjct: 135 GVA-----WNSMIHGYARNGFAREAVGLFKELNSNPLEKSCGDTFVLASVIGACADLGAI 189

Query: 641 KLGRIAVEK--LSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685
           + G+    +  + ++E       +L+ N++A+ G  D    V   M+
Sbjct: 190 EYGKQVHARILMDDVELDSVLISSLI-NLYAKCGHLDTANYVLKMMD 235


>gi|357507475|ref|XP_003624026.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360495|gb|ABN08505.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499041|gb|AES80244.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 646

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 186/510 (36%), Positives = 298/510 (58%), Gaps = 55/510 (10%)

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE----RN 294
           +L  YA+ G +  AR+LFD+MP R V  WN MI+ Y + G  EEA+ LF  M +    RN
Sbjct: 140 ILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEISRN 199

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
            ++WTTMI G+ +   L  AR   D+MP +++ +  AM+SGY Q    +E  ++F+ + +
Sbjct: 200 VITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLS 259

Query: 355 H-----DVVCWNVMIKG------------------------------------YAQCGRM 373
                 D   W  +I                                      +A+CG +
Sbjct: 260 PGNVQPDETTWVTVISSCSSLGDPCLSESIVRKLDDTVGFRPNYFVKTALLDMHAKCGNL 319

Query: 374 DEAINLFRQM---VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
           + A  +F Q+     +  V WN MI+ YA++  +  A  +F++M  +R+TVSWN++I+G+
Sbjct: 320 EAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSARHLFDKM-PQRDTVSWNSMIAGY 378

Query: 431 LQNEFHLDALKIFV-LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND 489
            QN   + A+K+F  +++ E  K D  T+    SAC HL  L LG     +  ++     
Sbjct: 379 TQNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSACGHLGELGLGNWAVSILKENHIQIS 438

Query: 490 LFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549
           + V NSLI+MY++CG +Q+A L+F++    D++S+N+LI+G+A +G+  E+I+L  +M  
Sbjct: 439 ISVYNSLISMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLLKMKE 498

Query: 550 EGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLD 609
           +G+ PD +T+I +L+ACSH GL+  G +LFE +       P V+HYACMID+L RAGRL+
Sbjct: 499 DGIEPDRITYIAILTACSHAGLLGEGQRLFESIKF-----PDVDHYACMIDMLGRAGRLE 553

Query: 610 EAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHA 669
           EA ++++ M ++P+AGI+G+LL A  +H+ ++LG +A  KL ++EP  +  Y LLSN++A
Sbjct: 554 EAMKLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKLFKVEPHNSGNYVLLSNIYA 613

Query: 670 EAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
            AGRW + +KVR +M   G +K  G SW+E
Sbjct: 614 SAGRWKDGDKVRDTMRKQGVKKTTGLSWLE 643



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 122/397 (30%), Positives = 206/397 (51%), Gaps = 35/397 (8%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF----DKMFR 105
           N ++  YAK G +  ARKLF++MP R +  WN MI+GY      +EA  LF    D+   
Sbjct: 138 NGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEASTLFHVMGDQEIS 197

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDA 165
            ++ +W  MIT + +KG L+ AR  FD +P +     WNAM++GYA+ G   E  +L + 
Sbjct: 198 RNVITWTTMITGHAKKGNLKTARMYFDKMPER-SVVSWNAMLSGYAQGGAPEETIRLFND 256

Query: 166 MPSKNIV-----SWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW-------NLMLDGYV 213
           M S   V     +W +++S  +  G+  L+      ++  D V +         +LD + 
Sbjct: 257 MLSPGNVQPDETTWVTVISSCSSLGDPCLSESIVRKLD--DTVGFRPNYFVKTALLDMHA 314

Query: 214 ELDDLDSAWKFFQKI---PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAM 270
           +  +L++A K F+++     ++ V W  M+S YAR G +  AR LFD+MP R+ V+WN+M
Sbjct: 315 KCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSARHLFDKMPQRDTVSWNSM 374

Query: 271 IAAYVQRGQIEEAARLFIEM--PERNPVSWTTMIDGYVRIAKLDE------ARRLLDQMP 322
           IA Y Q G+  +A +LF EM   E +     TM+  +     L E      A  +L +  
Sbjct: 375 IAGYTQNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSACGHLGELGLGNWAVSILKENH 434

Query: 323 YK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
            + +I+   ++IS Y +   M +A  IF ++ T D+V +N +I G+A+ G   E+I L  
Sbjct: 435 IQISISVYNSLISMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIELLL 494

Query: 382 QM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           +M    +  D +T+  ++   +    + +  ++FE +
Sbjct: 495 KMKEDGIEPDRITYIAILTACSHAGLLGEGQRLFESI 531



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 190/400 (47%), Gaps = 64/400 (16%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMS----QKNTVTYNSMISAYAKNGRVNDARKLFE 70
           V + N  I+   K G  EEA  +F  M      +N +T+ +MI+ +AK G +  AR  F+
Sbjct: 165 VADWNVMISGYWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFD 224

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM--------------------------- 103
           +MP+R++VSWN+M++GY      +E   LF+ M                           
Sbjct: 225 KMPERSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWVTVISSCSSLGDPC 284

Query: 104 --------------FRPDLFSWALMITCYTRKGELEKARELFDLLP--NKEDTACWNAMV 147
                         FRP+ F    ++  + + G LE A ++F+ L       +  WNAM+
Sbjct: 285 LSESIVRKLDDTVGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMI 344

Query: 148 AGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM-----EERDV 202
           + YA++G+   A+ L D MP ++ VSWNSM++GYT+NGE   A K FE M      + D 
Sbjct: 345 SAYARVGDLPSARHLFDKMPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDE 404

Query: 203 VSWNLMLDGYVELDDLD-SAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEARRLF 256
           V+   +      L +L    W     I ++N +      + +++S Y+R G M +A  +F
Sbjct: 405 VTMVSVFSACGHLGELGLGNWAV--SILKENHIQISISVYNSLISMYSRCGSMQDAVLIF 462

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLD 312
            +M  R++V++N +I+ + + G   E+  L ++M     E + +++  ++        L 
Sbjct: 463 QEMATRDLVSYNTLISGFAEHGHGMESIELLLKMKEDGIEPDRITYIAILTACSHAGLLG 522

Query: 313 EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
           E +RL + + + ++     MI    +  R++EA ++   +
Sbjct: 523 EGQRLFESIKFPDVDHYACMIDMLGRAGRLEEAMKLIQSM 562



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 173/346 (50%), Gaps = 22/346 (6%)

Query: 7   SIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMS---QKNTVTYNSMISAYAKNGRVN 63
           ++G + +Y F +   +    K G +E A KIF Q+     +++V +N+MISAYA+ G + 
Sbjct: 296 TVGFRPNY-FVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLP 354

Query: 64  DARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF-----RPDLFSWALMITCY 118
            AR LF++MPQR+ VSWNSMIAGY  N +  +A +LF++M      +PD  +   + +  
Sbjct: 355 SARHLFDKMPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSAC 414

Query: 119 TRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN 175
              GEL        +L         + +N++++ Y++ G+  +A  +   M ++++VS+N
Sbjct: 415 GHLGELGLGNWAVSILKENHIQISISVYNSLISMYSRCGSMQDAVLIFQEMATRDLVSYN 474

Query: 176 SMLSGYTKNGE----MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ 231
           +++SG+ ++G     + L  K  E   E D +++  +L        L    + F+ I   
Sbjct: 475 TLISGFAEHGHGMESIELLLKMKEDGIEPDRITYIAILTACSHAGLLGEGQRLFESIKFP 534

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE----EAARL 286
           +V  +  M+    R GR+ EA +L   MP+  +   + +++ A     Q+E     AA+L
Sbjct: 535 DVDHYACMIDMLGRAGRLEEAMKLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKL 594

Query: 287 FIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAM 332
           F   P  N  ++  + + Y    +  +  ++ D M  + +   T +
Sbjct: 595 FKVEPH-NSGNYVLLSNIYASAGRWKDGDKVRDTMRKQGVKKTTGL 639


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 210/679 (30%), Positives = 345/679 (50%), Gaps = 70/679 (10%)

Query: 120 RKGELEKARELFDLL-----PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSW 174
            KG + +A+ +  L+      +K+    +N     Y+K   +  A  + D MP +N+ SW
Sbjct: 130 EKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSW 189

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPE 230
             M+ G T++G      KFF  M       D  +++ ++   + LD L+       +I  
Sbjct: 190 TVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVM 249

Query: 231 QNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
           +   + +    ++L+ YA+ G + ++  +F+ M   N V+WNAMI+     G   EA  L
Sbjct: 250 RGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDL 309

Query: 287 FIEMPE-------RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISGYVQ 338
           F+ M            VS +  +   V +    E +    ++  + N+   TA+I  Y +
Sbjct: 310 FVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSK 369

Query: 339 NKRMDEANQIFDKIGTHDVVC-----WNVMIKGYAQCGRMDEAINLFRQM----VNKDIV 389
              + +A  +FD   T+ + C     WN MI GY+Q G   EA+ L+ QM    +  D+ 
Sbjct: 370 CGSLHDARSVFD---TNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLY 426

Query: 390 TW------------------------------------NTMIAGYAQIRQMDDAVKIFEE 413
           T+                                    N +   Y++   ++D  K+F+ 
Sbjct: 427 TYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDR 486

Query: 414 MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQL 473
           M + R+ VSW  L++ + Q+    +AL  F LM +EG   +  T +  L +CA L  L+ 
Sbjct: 487 M-EERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEY 545

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           GRQ+H L  K+G   +  + ++LI MYAKCG I  A  +F      D++SW ++I+GYA 
Sbjct: 546 GRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQ 605

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVE 593
           +G   +A++LF  M + G+  + VT + VL ACSH G+V+ GL  F+ M + Y + P +E
Sbjct: 606 HGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEME 665

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653
           HYAC+IDLL R GRLD+A E ++ M ++PN  +W TLLG CR+H N++LG IA  K+  +
Sbjct: 666 HYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSI 725

Query: 654 EPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPK 713
            P+ ++ Y LLSN + E G +++   +R  M+  G +K+PG SWI VK ++H F SGD +
Sbjct: 726 RPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVKGRVHKFYSGDQQ 785

Query: 714 QCRTAEICNTLKTLAAQIR 732
             +  EI   L+ L  +I+
Sbjct: 786 HPQKKEIYVKLEELREKIK 804



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 151/641 (23%), Positives = 267/641 (41%), Gaps = 144/641 (22%)

Query: 6   KSIGNKGSYVFNQNKKITQL----GKSGRVEEAIKIFSQMSQKN------TVTYNSMISA 55
           +SIG   +Y   Q + +  +     + G + EA  +   + + N       V +N     
Sbjct: 105 ESIGISETYQQTQVQDLIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHV 164

Query: 56  YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGY----LHNDKVKEARELFDKMFRPDLFSW 111
           Y+K      A  +F++MPQRN+ SW  MI G     L  D  K   E+ +    PD F++
Sbjct: 165 YSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAY 224

Query: 112 ALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPS 168
           + +I        LE  + +   +  +          +++  YAK+G+  ++  + + M  
Sbjct: 225 SAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTE 284

Query: 169 KNIVSWNSMLSGYTKNGEMHL-ASKFFEAMEE-------RDVVSWNLMLDGYVELDDLDS 220
            N VSWN+M+SG T NG +HL A   F  M+          +VS +  +   V+++    
Sbjct: 285 HNQVSWNAMISGCTSNG-LHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKE 343

Query: 221 AWKFFQKIP-EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV--AWNAMIAAYVQR 277
                 ++  E NV+    ++  Y++ G + +AR +FD   I   V   WNAMI+ Y Q 
Sbjct: 344 VQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQS 403

Query: 278 GQIEEAARLFIEMPERNPVS--WT------------------------------------ 299
           G  +EA  L+++M +    S  +T                                    
Sbjct: 404 GCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSV 463

Query: 300 --TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA------------ 345
              + D Y +   L++ R++ D+M  ++I + T +++ Y Q+   +EA            
Sbjct: 464 NNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGF 523

Query: 346 --NQI-------------FDKIG--THDVVC----------WNVMIKGYAQCGRMDEAIN 378
             NQ              F + G   H ++C           + +I  YA+CG + EA  
Sbjct: 524 APNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGK 583

Query: 379 LFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
           +F ++ N DIV+W  +I+GYAQ   ++DA+++F     RR                    
Sbjct: 584 VFDKISNPDIVSWTAIISGYAQHGLVEDALQLF-----RR-------------------- 618

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY--VNDLFVGNSL 496
                  M   G KA+  TL C L AC+H   ++ G   +   ++ GY  V ++     +
Sbjct: 619 -------MELSGIKANAVTLLCVLFACSHGGMVEEGL-FYFQQMEDGYGVVPEMEHYACI 670

Query: 497 ITMYAKCGRIQNA-ELLFKDADPVDVISWNSLIAGYAINGN 536
           I +  + GR+ +A E + K     + + W +L+ G  ++GN
Sbjct: 671 IDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGN 711



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 140/294 (47%), Gaps = 24/294 (8%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           N++  AY+K G + D RK+F++M +R++VSW +++  Y  +   +EA   F  M    F 
Sbjct: 465 NAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFA 524

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL 162
           P+ F+++ ++        LE  R++  LL       +    +A++  YAK G+  EA K+
Sbjct: 525 PNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKV 584

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDL 218
            D + + +IVSW +++SGY ++G +  A + F  ME    + + V+   +L        +
Sbjct: 585 FDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMV 644

Query: 219 DSAWKFFQK-------IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAM 270
           +    +FQ+       +PE    + +  L G  R GR+ +A     +MP+  N + W  +
Sbjct: 645 EEGLFYFQQMEDGYGVVPEMEHYACIIDLLG--RVGRLDDAMEFIRKMPMEPNEMVWQTL 702

Query: 271 IAAYVQRGQIEE---AARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           +      G +E    AAR  + +      ++  + + Y+     ++   L + M
Sbjct: 703 LGGCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVM 756



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 13/159 (8%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP----QRNL 77
           I    K G + EA K+F ++S  + V++ ++IS YA++G V DA +LF +M     + N 
Sbjct: 569 IDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANA 628

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFD 132
           V+   ++    H   V+E    F +M       P++  +A +I    R G L+ A E   
Sbjct: 629 VTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIR 688

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYN----EAKKLLDAMP 167
            +P + +   W  ++ G    GN       A+K+L   P
Sbjct: 689 KMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIRP 727



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 102/210 (48%), Gaps = 23/210 (10%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF 109
           +++I  YAK G + +A K+F+++   ++VSW ++I+GY  +  V++A +LF +M    + 
Sbjct: 566 SALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIK 625

Query: 110 SWALMITCY----TRKGELEKARELFD-------LLPNKEDTACWNAMVAGYAKIGNYNE 158
           + A+ + C     +  G +E+    F        ++P  E  AC   ++    ++G  ++
Sbjct: 626 ANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYAC---IIDLLGRVGRLDD 682

Query: 159 AKKLLDAMP-SKNIVSWNSMLSGYTKNGEMHL---ASKFFEAMEERDVVSWNLMLDGYVE 214
           A + +  MP   N + W ++L G   +G + L   A++   ++      ++ L+ + Y+E
Sbjct: 683 AMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYIE 742

Query: 215 LDDLDSAWKFFQKIPEQNV-----VSWVTM 239
               +        + +Q V      SW+++
Sbjct: 743 TGSYEDGLSLRNVMKDQGVKKEPGYSWISV 772



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 83/178 (46%), Gaps = 10/178 (5%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVN-DLFV-GNSLITMYAKCGRIQNAELLFKDADPV 519
           L  CA   +++  + +H L +KS + + DL V  N    +Y+KC   + A  +F +    
Sbjct: 125 LRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQR 184

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
           +V SW  +I G   +G   +  K F EM+  G+ PD   +  ++ +C  +GL    L+L 
Sbjct: 185 NVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSC--IGL--DSLELG 240

Query: 580 ECMTEVYAIEPLVEHY---ACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGAC 634
           + +     +     H      ++++ ++ G +++++  V  M  + N   W  ++  C
Sbjct: 241 KMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSY-WVFNMMTEHNQVSWNAMISGC 297


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 197/538 (36%), Positives = 294/538 (54%), Gaps = 49/538 (9%)

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN---PVSWT 299
           YA+  R  +ARR+FD+MP+R+ VAWNA++A Y + G    A  + + M E     P S T
Sbjct: 104 YAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSIT 163

Query: 300 -------------------------------------TMIDGYVRIAKLDEARRLLDQMP 322
                                                 ++D Y +   +  AR + D MP
Sbjct: 164 LVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMP 223

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ-CGRM---DEAIN 378
            KN  +  AMI GY QN    EA  +F+++    V   +V +    Q CG +   DE + 
Sbjct: 224 TKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMR 283

Query: 379 ----LFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
               L R  ++ ++   N +I  Y++ +++D A  +F+E+  RR  VSWNA+I G  QN 
Sbjct: 284 VHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDEL-DRRTQVSWNAMILGCAQNG 342

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN 494
              DA+++F  M  E  K D  TL   + A A ++     R IH  +I+     D++V  
Sbjct: 343 CSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLT 402

Query: 495 SLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP 554
           +LI MYAKCGR+  A +LF  A    VI+WN++I GY  +G    A++LFEEM   G+ P
Sbjct: 403 ALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVP 462

Query: 555 DPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEM 614
           +  TF+ VLSACSH GLVD G + F  M E Y +EP +EHY  M+DLL RAG+LDEA+  
Sbjct: 463 NETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAF 522

Query: 615 VKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRW 674
           ++ M + P   ++G +LGAC++H+N++L   + +K+ EL PQ+   + LL+N++A A  W
Sbjct: 523 IQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMW 582

Query: 675 DEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            +V +VR +ME +G QK PG S I++KN+IHTF SG     +  EI + L  L  +I+
Sbjct: 583 KDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIK 640



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 195/447 (43%), Gaps = 79/447 (17%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----F 104
            ++ + YAK  R  DAR++F++MP R+ V+WN+++AGY  N   + A E+  +M      
Sbjct: 98  TALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGE 157

Query: 105 RPDLFSWALMITCYTRKGELEKARE--LFDLLPNKEDTA-CWNAMVAGYAKIGNYNEAKK 161
           RPD  +   ++        L   RE   F +    E+      A++  Y K G+   A+ 
Sbjct: 158 RPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARV 217

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDD 217
           + D MP+KN VSWN+M+ GY +NG+   A   F  M E  V    VS    L    EL  
Sbjct: 218 VFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGC 277

Query: 218 LDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
           LD   +  + +     + NV     +++ Y++  R+  A  +FD++  R  V+WNAMI  
Sbjct: 278 LDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILG 337

Query: 274 YVQRGQIEEAARLFIEMPERN--PVSWT--TMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
             Q G  E+A RLF  M   N  P S+T  ++I     I+   +AR              
Sbjct: 338 CAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQAR-------------- 383

Query: 330 TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIV 389
              I GY     +D+           DV     +I  YA+CGR++ A  LF     + ++
Sbjct: 384 --WIHGYSIRLHLDQ-----------DVYVLTALIDMYAKCGRVNIARILFNSARERHVI 430

Query: 390 TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
           TWN MI GY        AV++FEEM              G + NE               
Sbjct: 431 TWNAMIHGYGSHGFGKAAVELFEEMKS-----------IGIVPNE--------------- 464

Query: 450 GKKADHSTLACALSACAHLAALQLGRQ 476
                 +T    LSAC+H   +  GR+
Sbjct: 465 ------TTFLSVLSACSHAGLVDEGRE 485



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 113/432 (26%), Positives = 187/432 (43%), Gaps = 92/432 (21%)

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG----------RMDE-- 375
           A TA+ + Y + +R  +A ++FD++   D V WN ++ GYA+ G          RM E  
Sbjct: 96  AATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEE 155

Query: 376 -----AINL-----------------------FRQMVNKDIVTWNTMIAGYAQIRQMDDA 407
                +I L                        R  + + +     ++  Y +   +  A
Sbjct: 156 GERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAA 215

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
             +F+ M   +N+VSWNA+I G+ QN    +AL +F  M +EG      ++  AL AC  
Sbjct: 216 RVVFDWM-PTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGE 274

Query: 468 LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSL 527
           L  L  G ++H L ++ G  +++ V N+LITMY+KC R+  A  +F + D    +SWN++
Sbjct: 275 LGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAM 334

Query: 528 IAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG------LVDGGLKLFEC 581
           I G A NG + +A++LF  M +E V PD  T + V+ A + +        + G       
Sbjct: 335 ILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHL 394

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRLD-------------------------------- 609
             +VY +  L++ YA       + GR++                                
Sbjct: 395 DQDVYVLTALIDMYA-------KCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKA 447

Query: 610 --EAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSE---LEPQKTSCYALL 664
             E FE +K + I PN   + ++L AC     +  GR     + E   LEP     Y  +
Sbjct: 448 AVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEH-YGTM 506

Query: 665 SNMHAEAGRWDE 676
            ++   AG+ DE
Sbjct: 507 VDLLGRAGKLDE 518



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 134/292 (45%), Gaps = 21/292 (7%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR---- 105
            +++ AY K G +  AR +F+ MP +N VSWN+MI GY  N   +EA  LF++M      
Sbjct: 200 TAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVD 259

Query: 106 -PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKK 161
             D+   A +  C    G L++   + +LL       + +  NA++  Y+K    + A  
Sbjct: 260 VTDVSVLAALQAC-GELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASH 318

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL-----D 216
           + D +  +  VSWN+M+ G  +NG    A + F  M+  +V   +  L   +       D
Sbjct: 319 VFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISD 378

Query: 217 DLDSAWKFFQKIP---EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
            L + W     I    +Q+V     ++  YA+ GR+  AR LF+    R+V+ WNAMI  
Sbjct: 379 PLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHG 438

Query: 274 YVQRGQIEEAARLFIEMPE----RNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           Y   G  + A  LF EM       N  ++ +++        +DE R     M
Sbjct: 439 YGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSM 490



 Score = 92.8 bits (229), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 157/352 (44%), Gaps = 27/352 (7%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K G +  A  +F  M  KN+V++N+MI  YA+NG   +A  LF +M +  +   +  +  
Sbjct: 208 KCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLA 267

Query: 87  YLHN-------DKVKEARELFDKM-FRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
            L         D+     EL  ++    ++     +IT Y++   ++ A  +FD L ++ 
Sbjct: 268 ALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDEL-DRR 326

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI-------VSWNSMLSGYTKNGEMHLAS 191
               WNAM+ G A+ G   +A +L   M  +N+       VS    L+  +   +     
Sbjct: 327 TQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIH 386

Query: 192 KFFEAME-ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRML 250
            +   +  ++DV     ++D Y +   ++ A   F    E++V++W  M+ GY  +G   
Sbjct: 387 GYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGK 446

Query: 251 EARRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTM 301
            A  LF++M     + N   + ++++A    G ++E    F  M E   +      + TM
Sbjct: 447 AAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTM 506

Query: 302 IDGYVRIAKLDEARRLLDQMPY-KNIAAQTAMISGYVQNKRMDEANQIFDKI 352
           +D   R  KLDEA   + +MP    ++   AM+     +K ++ A +   KI
Sbjct: 507 VDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKI 558



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 147/320 (45%), Gaps = 24/320 (7%)

Query: 26  GKSGRVEEAIKIFSQMSQ----KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           G+ G ++E +++   + +     N    N++I+ Y+K  RV+ A  +F+++ +R  VSWN
Sbjct: 273 GELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWN 332

Query: 82  SMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDL---L 134
           +MI G   N   ++A  LF +M     +PD F+   +I       +  +AR +      L
Sbjct: 333 AMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRL 392

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
              +D     A++  YAK G  N A+ L ++   +++++WN+M+ GY  +G    A + F
Sbjct: 393 HLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELF 452

Query: 195 EAMEERDVV----SWNLMLDGYVELDDLDSAWKFFQKIPEQ-----NVVSWVTMLSGYAR 245
           E M+   +V    ++  +L        +D   ++F  + E       +  + TM+    R
Sbjct: 453 EEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGR 512

Query: 246 NGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTTM 301
            G++ EA     +MP+   +  + AM+ A      +   EE+A+   E+  +  V    +
Sbjct: 513 AGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLL 572

Query: 302 IDGYVRIAKLDEARRLLDQM 321
            + Y   +   +  R+   M
Sbjct: 573 ANIYANASMWKDVARVRTAM 592



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 122/274 (44%), Gaps = 23/274 (8%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V   N  IT   K  RV+ A  +F ++ ++  V++N+MI   A+NG   DA +LF +M
Sbjct: 295 SNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRM 354

Query: 73  PQRNL----VSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGEL 124
              N+     +  S+I          +AR +     R     D++    +I  Y + G +
Sbjct: 355 QLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRV 414

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV----SWNSMLSG 180
             AR LF+    +     WNAM+ GY   G    A +L + M S  IV    ++ S+LS 
Sbjct: 415 NIARILFNSARERH-VITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSA 473

Query: 181 YTKNGEMHLASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
            +  G +    ++F +M+E       +  +  M+D       LD AW F QK+P    +S
Sbjct: 474 CSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLS 533

Query: 236 WVTMLSGYARNGRMLE-----ARRLFDQMPIRNV 264
               + G  +  + +E     A+++F+  P   V
Sbjct: 534 VYGAMLGACKLHKNVELAEESAQKIFELGPQEGV 567



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 60/126 (47%), Gaps = 1/126 (0%)

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
           AL  FV M+  G      T    L  CA    L  GR +H      G  ++     +L  
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV-MEGVAPDPV 557
           MYAKC R  +A  +F      D ++WN+L+AGYA NG A  A+++   M   EG  PD +
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 558 TFIGVL 563
           T + VL
Sbjct: 163 TLVSVL 168


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 211/654 (32%), Positives = 339/654 (51%), Gaps = 36/654 (5%)

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
           ++H D     R +F+ +   + F W +MI  Y +      A  L+             +M
Sbjct: 25  FIHIDY---TRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLY------------KSM 69

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN 206
           ++ Y    NY     LL    S     W +      K    H+    F++    DV   N
Sbjct: 70  LSNYLGADNY--TYPLLIQACSIRRSEWEA------KQVHNHVLKLGFDS----DVYVRN 117

Query: 207 LMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA 266
            +++ +    ++  A + F +    + VSW ++L+GY   G + EA+ ++ QMP R+++A
Sbjct: 118 TLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIA 177

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
            N+MI  +  RG + EA +LF EM E++ V+W+ +I  + +    +EA R    M    +
Sbjct: 178 SNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGV 237

Query: 327 AA-QTAMISGYVQNKRMDEAN------QIFDKIGTHDVV-CWNVMIKGYAQCGRMDEAIN 378
              +   +S       +   N       +  KIGT   +   N +I  Y++CG +  A  
Sbjct: 238 MVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARK 297

Query: 379 LFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
           LF +    D+++WN+MI+GY +   +D+A  IF+ M   ++ VSW+++ISG+ QN+   +
Sbjct: 298 LFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSM-PEKDVVSWSSMISGYAQNDLFDE 356

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
            L +F  M   G K D +TL   +SACA LAAL+ G+ +H    ++G   ++ +G +LI 
Sbjct: 357 TLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLID 416

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           MY KCG ++ A  +F       + +WN+LI G A+NG    ++ +F  M    V P+ +T
Sbjct: 417 MYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEIT 476

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
           F+GVL AC H+GLVD G   F  M   + I+P V+HY CM+DLL RAG+L EA E++  M
Sbjct: 477 FMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRM 536

Query: 619 KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVE 678
            + P+   WG LLGAC+ H + ++GR    KL EL+P     + LLSN++A  G+WD+V 
Sbjct: 537 PMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVL 596

Query: 679 KVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           ++R  M      K PGCS IE    IH FL+GD        I + L  +A +++
Sbjct: 597 EIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLK 650



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/445 (24%), Positives = 216/445 (48%), Gaps = 32/445 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V+ +N  I        + +A ++F++ S  ++V++NS+++ Y + G V +A+ ++ QM
Sbjct: 111 SDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM 170

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF- 131
           P+R++++ NSMI  +     V EA +LFD+M   D+ +W+ +I C+ +    E+A   F 
Sbjct: 171 PERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFV 230

Query: 132 ----------DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
                     +++     +AC N +V    K+ +    K   ++  +      N+++  Y
Sbjct: 231 GMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQ----NALIYMY 286

Query: 182 TKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
           +K G++ +A K F+     D++SWN M+ GY++ + +D+A   F  +PE++VVSW +M+S
Sbjct: 287 SKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMIS 346

Query: 242 GYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPER---- 293
           GYA+N    E   LF +M +           ++I+A  +   +E+   +   +       
Sbjct: 347 GYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTI 406

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
           N +  TT+ID Y++   ++ A  +   M  K I+   A+I G   N  ++ +  +F  + 
Sbjct: 407 NVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMK 466

Query: 354 THDVVCWNVMIKG-YAQC---GRMDEAINLFRQMVN-----KDIVTWNTMIAGYAQIRQM 404
              V    +   G    C   G +DE  + F  M++      ++  +  M+    +  ++
Sbjct: 467 KCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKL 526

Query: 405 DDAVKIFEEMGKRRNTVSWNALISG 429
            +A ++   M    +  +W AL+  
Sbjct: 527 QEAEELLNRMPMTPDVATWGALLGA 551


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 202/692 (29%), Positives = 354/692 (51%), Gaps = 74/692 (10%)

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           F P+       +  +  +G+L  A ++FD +P K +T   N M++G+ K G  ++A++L 
Sbjct: 39  FNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAK-NTISLNMMISGHLKFGKLSKARELF 97

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLD 219
           D M  +  VSW  ++ GY ++ +   A + +  M     E D V+   +L G+ EL+  +
Sbjct: 98  DGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKN 157

Query: 220 SAWKFFQKI----PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
              +    +     E N++   +++  Y +   +  A +LF  M  ++ V +N+++  Y 
Sbjct: 158 VIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYS 217

Query: 276 QRGQIEEAARLFIEMPER--NPVSWTTMIDGYVRIAKLDEARRLLDQMPYK--------- 324
             G  EEA  LF+E+      P  +T         A L  A   LD   +          
Sbjct: 218 NEGLNEEAIELFLELHNSGIKPSDFT--------FAALLSAAVGLDDTKFGQQVHGFVLK 269

Query: 325 -----NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
                N+    A++  Y ++ ++DE  ++F ++   D + +NV+I  YA  G+  E+ +L
Sbjct: 270 TNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDL 329

Query: 380 FRQM---------------------------------------VNKDIVTWNTMIAGYAQ 400
           FR++                                        N +    N ++  YA+
Sbjct: 330 FRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAK 389

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
                +A KIF+ +  + +TV W A+IS ++Q   H + + +F  M + G  AD +T A 
Sbjct: 390 CNGDKEAQKIFDNIACK-STVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFAS 448

Query: 461 ALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVD 520
            L ACA+LA++ LGRQ+H L I+SG++++++ G++L+  YAKCG + +A   F +    +
Sbjct: 449 ILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERN 508

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE 580
            +SWN+LI+ YA NGN    +  F++M+  G  PD V+F+ VLSACSH G V+  L  F 
Sbjct: 509 SVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFN 568

Query: 581 CMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNI 640
            MT++Y + P  EHY  M+D+L R GR DEA +++  M  +P+  +W ++L +CR+H+N 
Sbjct: 569 SMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNH 628

Query: 641 KLGRIAVEKLSELEPQKTSC-YALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
           +L + A ++L  +E  + +  Y  +SN++A AG+WD V KV+ +M   G +K P  SW+E
Sbjct: 629 ELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVE 688

Query: 700 VKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           +K+Q H F + D       +I   +  L+ ++
Sbjct: 689 IKHQTHVFSANDKSHPEMKKILRKINALSKEM 720



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 176/675 (26%), Positives = 294/675 (43%), Gaps = 121/675 (17%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N ++    + G +  A ++F QM  KNT++ N MIS + K G+++ AR+LF+ M +R  V
Sbjct: 47  NFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAV 106

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDL- 133
           SW  +I GYL +++ KEA  L+  M R    PD   +  ++T  +  GELE    +  + 
Sbjct: 107 SWTILIGGYLQSNQSKEAFRLYADMRRGGIEPD---YVTLVTLLSGFGELETKNVIVQIH 163

Query: 134 -----LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
                L  + +    N++V  Y K      A +L   M +K+ V++NS+++GY+  G   
Sbjct: 164 THVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNE 223

Query: 189 LASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV----TML 240
            A + F  +    +     ++  +L   V LDD     +    + + N V  V     +L
Sbjct: 224 EAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALL 283

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPV 296
             Y+++ ++ E  +LF +MP  + +++N +I +Y   GQ +E+  LF ++     +R   
Sbjct: 284 DYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQF 343

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIA--------AQTAMISGYVQNKRMDEANQI 348
            + T++     IA      R+  Q+  + I          + A++  Y +     EA +I
Sbjct: 344 PFATLLS----IATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKI 399

Query: 349 FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAG------- 397
           FD I     V W  MI  Y Q G+ +E IN+F  M    V  D  T+ +++         
Sbjct: 400 FDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASI 459

Query: 398 ----------------------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
                                       YA+   M DA+K F EM + RN+VSWNALIS 
Sbjct: 460 SLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPE-RNSVSWNALISA 518

Query: 430 FLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND 489
           + QN      L  F  M Q G K D  +    LSAC+H                 G+V +
Sbjct: 519 YAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSH----------------CGFVEE 562

Query: 490 -LFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
            L+  NS+  +Y    + ++               + S++     NG   EA KL  EM 
Sbjct: 563 ALWHFNSMTQIYEVTPKREH---------------YTSMVDVLCRNGRFDEAEKLMTEMP 607

Query: 549 MEGVAPDPVTFIGVLSAC----SHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSR 604
            E   P  + +  VL++C    +H        +LF  M ++    P    Y  M ++ + 
Sbjct: 608 FE---PSEIMWSSVLNSCRIHKNHELAKKAADRLFN-MEDLRDAAP----YINMSNIYAV 659

Query: 605 AGRLDEAFEMVKGMK 619
           AG+ D   ++ K M+
Sbjct: 660 AGQWDNVAKVKKAMR 674



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 139/300 (46%), Gaps = 27/300 (9%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           +N  +    K    +EA KIF  ++ K+TV + +MISAY + G+  +   +F  M +  +
Sbjct: 380 ENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGV 439

Query: 78  VSWNSMIAGYLHN----DKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARE 129
            +  +  A  L        +   R+L   + R     +++S + ++  Y + G +  A +
Sbjct: 440 PADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIK 499

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGN----YNEAKKLLDAMPSKNIVSWNSMLS-----G 180
            F  +P + ++  WNA+++ YA+ GN     N  ++++ +    + VS+ S+LS     G
Sbjct: 500 SFGEMPER-NSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCG 558

Query: 181 YTKNGEMHLAS--KFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSWV 237
           + +    H  S  + +E   +R+   +  M+D        D A K   ++P E + + W 
Sbjct: 559 FVEEALWHFNSMTQIYEVTPKRE--HYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWS 616

Query: 238 TMLSG--YARNGRMLE--ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           ++L+     +N  + +  A RLF+   +R+   +  M   Y   GQ +  A++   M +R
Sbjct: 617 SVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDR 676



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 102/203 (50%), Gaps = 13/203 (6%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V++ +  +    K G + +AIK F +M ++N+V++N++ISAYA+NG V+     F+QM
Sbjct: 476 SNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQM 535

Query: 73  PQR----NLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGE 123
            Q     + VS+ S+++   H   V+EA   F+ M +     P    +  M+    R G 
Sbjct: 536 IQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGR 595

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS----KNIVSWNSMLS 179
            ++A +L   +P +     W++++       N+  AKK  D + +    ++   + +M +
Sbjct: 596 FDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSN 655

Query: 180 GYTKNGEMHLASKFFEAMEERDV 202
            Y   G+    +K  +AM +R V
Sbjct: 656 IYAVAGQWDNVAKVKKAMRDRGV 678


>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
          Length = 803

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 215/735 (29%), Positives = 365/735 (49%), Gaps = 41/735 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            F  N+ +    ++G    A+  F  +   N  +YN+ +SA  + G ++ AR L   MP+
Sbjct: 43  TFLANRLVELYSRAGLPRHALLAFRALPSPNDYSYNAALSAACRAGDLDAARDLLGGMPR 102

Query: 75  RNLVSWNSMIAGYLHND-KVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARE 129
           RN VSWN++I+    +     EA E++ +M      P  F+ A +++       L   R 
Sbjct: 103 RNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGRR 162

Query: 130 LFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
              +        +    NA++  Y K G+  +A +L   M   N VS+ +M+ G  + G 
Sbjct: 163 CHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTGS 222

Query: 187 MHLASKFFEAMEER----DVVSWNLMLDGYVELDDLD----SAWKFFQKI---------- 228
           +  A + F  M       D VS + +L    +    D     A++  Q I          
Sbjct: 223 IDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDYSVARAFRLGQAIHALVVRKGFG 282

Query: 229 PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFI 288
            +Q+V +  +++  Y +   M EA ++F+ +P   +V+WN +I  + Q G   +A  +  
Sbjct: 283 SDQHVGN--SLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLS 340

Query: 289 EMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDE 344
            M E     N V+++ ++   ++   +  AR + D++   ++     ++SGY Q ++  +
Sbjct: 341 LMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQD 400

Query: 345 ANQIFDKIGTHDV----VCWNVMIKGYAQCGRMDEAINL----FRQMVNKDIVTWNTMIA 396
             ++F ++   +V        V++   ++ G +D    +     R +++ D+   + ++ 
Sbjct: 401 TIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVD 460

Query: 397 GYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHS 456
            Y++  Q+  A  IF +M   R+ V WN++ISG   +  + +A   F  M + G     S
Sbjct: 461 MYSKCGQIGIARSIFNKM-TERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTES 519

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
           + A  +++C+ L+++  GRQIH   +K GY  +++VG++LI MYAKCG + +A L F   
Sbjct: 520 SYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTM 579

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGL 576
              ++++WN +I GYA NG   +A++LFE M+     PD VTFI VL+ CSH GLVD  +
Sbjct: 580 MMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAM 639

Query: 577 KLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRM 636
             F  M   Y I PL EHY C+ID L RAGR  E   ++  M  K +  IW  LL AC +
Sbjct: 640 AFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAACVV 699

Query: 637 HQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCS 696
           H N +LG+ A E L  ++P+  S Y LLSN++A  GR  +   VR  M   G  K  G S
Sbjct: 700 HHNAELGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNRGVVKGRGYS 759

Query: 697 WIEVKNQIHTFLSGD 711
           WI+ K+ +  F+  D
Sbjct: 760 WIDQKDGVRAFMVAD 774



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 157/616 (25%), Positives = 283/616 (45%), Gaps = 76/616 (12%)

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           DT   N +V  Y++ G    A     A+PS N  S+N+ LS   + G++  A      M 
Sbjct: 42  DTFLANRLVELYSRAGLPRHALLAFRALPSPNDYSYNAALSAACRAGDLDAARDLLGGMP 101

Query: 199 ERDVVSWNLMLDGYV-ELDDLDSAWKFFQKIPEQNVV----SWVTMLSGYARNGRMLEAR 253
            R+ VSWN ++        D   A + + ++  + ++    +  ++LS       + + R
Sbjct: 102 RRNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGR 161

Query: 254 RLFDQMPIR-----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRI 308
           R    + ++     N    NA++  Y + G + +A RLF  M   N VS+T M+ G  + 
Sbjct: 162 RCHG-VAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQT 220

Query: 309 AKLDEARRLLDQM-----PYKNIAAQT--------------------------------- 330
             +D+A RL  +M     P   ++  +                                 
Sbjct: 221 GSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDYSVARAFRLGQAIHALVVRKG 280

Query: 331 ---------AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
                    ++I  Y +   MDEA ++F+ + +  +V WN++I G+ Q G   +A+ +  
Sbjct: 281 FGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLS 340

Query: 382 QM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHL 437
            M       + VT++ ++A   + R +  A  +F+++  R +  +WN L+SG+ Q E H 
Sbjct: 341 LMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKI-SRPSVTTWNTLLSGYCQEEQHQ 399

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
           D +++F  M  +  + D +TLA  LS+C+ L  L  GRQ+H  +++    ND+FV + L+
Sbjct: 400 DTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLV 459

Query: 498 TMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
            MY+KCG+I  A  +F      DV+ WNS+I+G  I+    EA   F++M   G+ P   
Sbjct: 460 DMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTES 519

Query: 558 TFIGVLSACSHVGLVDGGLKLF-ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVK 616
           ++  ++++CS +  +  G ++  + M + Y     V   + +ID+ ++ G +D+A     
Sbjct: 520 SYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVG--SALIDMYAKCGNMDDARLFFD 577

Query: 617 GMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL-----SELEPQKTSCYALLSNMHAEA 671
            M +K N   W  ++      QN  LG  AVE       +E +P   +  A+L+   + +
Sbjct: 578 TMMMK-NIVAWNEMIHG--YAQN-GLGDKAVELFEYMLTTEQKPDAVTFIAVLTGC-SHS 632

Query: 672 GRWDEVEKVRVSMEGS 687
           G  D+      SME S
Sbjct: 633 GLVDKAMAFFNSMENS 648


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 211/688 (30%), Positives = 349/688 (50%), Gaps = 71/688 (10%)

Query: 120 RKGELEKARELFDLL-----PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSW 174
            KG + +A+ +  L+      +K+    +N     Y+K   +  A  + D MP +N+ SW
Sbjct: 76  EKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSW 135

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPE 230
             M+ G T++G      KFF  M       D  +++ ++   + LD L+       +I  
Sbjct: 136 TVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVM 195

Query: 231 QNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
           +   + +    ++L+ YA+ G + ++  +F+ M   N V+WNAMI+     G   EA  L
Sbjct: 196 RGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDL 255

Query: 287 FIEMPE-------RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISGYVQ 338
           F+ M            VS +  +   V +    E +    ++  + N+   TA+I  Y +
Sbjct: 256 FVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSK 315

Query: 339 NKRMDEANQIFDKIGTHDVVC-----WNVMIKGYAQCGRMDEAINLFRQM----VNKDIV 389
              + +A  +FD   T+ + C     WN MI GY+Q G   EA+ L+ QM    +  D+ 
Sbjct: 316 CGSLHDARSVFD---TNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLY 372

Query: 390 TW------------------------------------NTMIAGYAQIRQMDDAVKIFEE 413
           T+                                    N +   Y++   ++D  K+F+ 
Sbjct: 373 TYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDR 432

Query: 414 MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQL 473
           M + R+ VSW  L++ + Q+    +AL  F LM +EG   +  T +  L +CA L  L+ 
Sbjct: 433 M-EERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLEY 491

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           GRQ+H L  K+G   +  + ++LI MYAKCG I  A  +F      D++SW ++I+GYA 
Sbjct: 492 GRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQ 551

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVE 593
           +G   +A++LF  M + G+  + VT + VL ACSH G+V+ GL  F+ M + Y + P +E
Sbjct: 552 HGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEME 611

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653
           HYAC+IDLL R GRLD+A E ++ M ++PN  +W TLLG CR+H N++LG IA  K+  +
Sbjct: 612 HYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSI 671

Query: 654 EPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPK 713
            P+ ++ Y LLSN + E G +++   +R  M+  G +K+PG SWI VK ++H F SGD +
Sbjct: 672 RPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVKGRVHKFYSGDQQ 731

Query: 714 QCRTAEICNTLKTLAAQIRN-TPLAVII 740
             +  EI   L+ L  +I+   P+ + +
Sbjct: 732 HPQKKEIYVKLEELREKIKAMVPMGMFV 759



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 151/641 (23%), Positives = 267/641 (41%), Gaps = 144/641 (22%)

Query: 6   KSIGNKGSYVFNQNKKITQL----GKSGRVEEAIKIFSQMSQKN------TVTYNSMISA 55
           +SIG   +Y   Q + +  +     + G + EA  +   + + N       V +N     
Sbjct: 51  ESIGISETYQQTQVQDLIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHV 110

Query: 56  YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGY----LHNDKVKEARELFDKMFRPDLFSW 111
           Y+K      A  +F++MPQRN+ SW  MI G     L  D  K   E+ +    PD F++
Sbjct: 111 YSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAY 170

Query: 112 ALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPS 168
           + +I        LE  + +   +  +          +++  YAK+G+  ++  + + M  
Sbjct: 171 SAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTE 230

Query: 169 KNIVSWNSMLSGYTKNGEMHL-ASKFFEAMEE-------RDVVSWNLMLDGYVELDDLDS 220
            N VSWN+M+SG T NG +HL A   F  M+          +VS +  +   V+++    
Sbjct: 231 HNQVSWNAMISGCTSNG-LHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKE 289

Query: 221 AWKFFQKIP-EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV--AWNAMIAAYVQR 277
                 ++  E NV+    ++  Y++ G + +AR +FD   I   V   WNAMI+ Y Q 
Sbjct: 290 VQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQS 349

Query: 278 GQIEEAARLFIEMPERNPVS--WT------------------------------------ 299
           G  +EA  L+++M +    S  +T                                    
Sbjct: 350 GCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSV 409

Query: 300 --TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA------------ 345
              + D Y +   L++ R++ D+M  ++I + T +++ Y Q+   +EA            
Sbjct: 410 NNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGF 469

Query: 346 --NQI-------------FDKIG--THDVVC----------WNVMIKGYAQCGRMDEAIN 378
             NQ              F + G   H ++C           + +I  YA+CG + EA  
Sbjct: 470 APNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGK 529

Query: 379 LFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
           +F ++ N DIV+W  +I+GYAQ   ++DA+++F     RR                    
Sbjct: 530 VFDKISNPDIVSWTAIISGYAQHGLVEDALQLF-----RR-------------------- 564

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY--VNDLFVGNSL 496
                  M   G KA+  TL C L AC+H   ++ G   +   ++ GY  V ++     +
Sbjct: 565 -------MELSGIKANAVTLLCVLFACSHGGMVEEGL-FYFQQMEDGYGVVPEMEHYACI 616

Query: 497 ITMYAKCGRIQNA-ELLFKDADPVDVISWNSLIAGYAINGN 536
           I +  + GR+ +A E + K     + + W +L+ G  ++GN
Sbjct: 617 IDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGN 657



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 140/294 (47%), Gaps = 24/294 (8%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           N++  AY+K G + D RK+F++M +R++VSW +++  Y  +   +EA   F  M    F 
Sbjct: 411 NAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFA 470

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL 162
           P+ F+++ ++        LE  R++  LL       +    +A++  YAK G+  EA K+
Sbjct: 471 PNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKV 530

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDL 218
            D + + +IVSW +++SGY ++G +  A + F  ME    + + V+   +L        +
Sbjct: 531 FDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMV 590

Query: 219 DSAWKFFQK-------IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAM 270
           +    +FQ+       +PE    + +  L G  R GR+ +A     +MP+  N + W  +
Sbjct: 591 EEGLFYFQQMEDGYGVVPEMEHYACIIDLLG--RVGRLDDAMEFIRKMPMEPNEMVWQTL 648

Query: 271 IAAYVQRGQIEE---AARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           +      G +E    AAR  + +      ++  + + Y+     ++   L + M
Sbjct: 649 LGGCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVM 702



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 13/159 (8%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP----QRNL 77
           I    K G + EA K+F ++S  + V++ ++IS YA++G V DA +LF +M     + N 
Sbjct: 515 IDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANA 574

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFD 132
           V+   ++    H   V+E    F +M       P++  +A +I    R G L+ A E   
Sbjct: 575 VTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIR 634

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYN----EAKKLLDAMP 167
            +P + +   W  ++ G    GN       A+K+L   P
Sbjct: 635 KMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIRP 673



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 102/210 (48%), Gaps = 23/210 (10%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF 109
           +++I  YAK G + +A K+F+++   ++VSW ++I+GY  +  V++A +LF +M    + 
Sbjct: 512 SALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIK 571

Query: 110 SWALMITCY----TRKGELEKARELFD-------LLPNKEDTACWNAMVAGYAKIGNYNE 158
           + A+ + C     +  G +E+    F        ++P  E  AC   ++    ++G  ++
Sbjct: 572 ANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYAC---IIDLLGRVGRLDD 628

Query: 159 AKKLLDAMP-SKNIVSWNSMLSGYTKNGEMHL---ASKFFEAMEERDVVSWNLMLDGYVE 214
           A + +  MP   N + W ++L G   +G + L   A++   ++      ++ L+ + Y+E
Sbjct: 629 AMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYIE 688

Query: 215 LDDLDSAWKFFQKIPEQNV-----VSWVTM 239
               +        + +Q V      SW+++
Sbjct: 689 TGSYEDGLSLRNVMKDQGVKKEPGYSWISV 718



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 83/178 (46%), Gaps = 10/178 (5%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVN-DLFV-GNSLITMYAKCGRIQNAELLFKDADPV 519
           L  CA   +++  + +H L +KS + + DL V  N    +Y+KC   + A  +F +    
Sbjct: 71  LRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQR 130

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
           +V SW  +I G   +G   +  K F EM+  G+ PD   +  ++ +C  +GL    L+L 
Sbjct: 131 NVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSC--IGL--DSLELG 186

Query: 580 ECMTEVYAIEPLVEHY---ACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGAC 634
           + +     +     H      ++++ ++ G +++++  V  M  + N   W  ++  C
Sbjct: 187 KMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSY-WVFNMMTEHNQVSWNAMISGC 243


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 173/448 (38%), Positives = 278/448 (62%), Gaps = 9/448 (2%)

Query: 288 IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347
           I+M  R    W  M+ GY +     +A+ L D MP +N+   TAM++GY + K ++ A +
Sbjct: 67  IDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARR 126

Query: 348 IFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN--KDIVTWNTMIAGYAQIRQMD 405
            FD +    VV WN M+ GYAQ G  +EA+ LF +M+   ++ VTWN MI+ Y ++  +D
Sbjct: 127 YFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMLGAYRNSVTWNAMISAYMRVGDLD 186

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV-LMTQEGKKADHSTLACALSA 464
            A K+F  M   RN V+WN++I+G+ QN     A+++F  ++T +    D  T+   +SA
Sbjct: 187 SARKLFNTM-PGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISA 245

Query: 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
           C HL AL+LG  +     ++     +   N++I MY++CG +++A+ +F++    DV+S+
Sbjct: 246 CGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSY 305

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           N+LI+G+A +G+  EAI L   M   G+ PD VTFIGVL+ACSH GL++ G K+FE + +
Sbjct: 306 NTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD 365

Query: 585 VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
                P ++HYACM+DLL R G L++A   ++ M ++P+AG++G+LL A R+H+ ++LG 
Sbjct: 366 -----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGE 420

Query: 645 IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQI 704
           +A  KL ELEP  +  + LLSN++A AGRW +VE++R +M+  G +K  G SW+E   ++
Sbjct: 421 LAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKL 480

Query: 705 HTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           H F+  D    R+ +I   L  L  ++R
Sbjct: 481 HKFIVADRSHERSDDIYQLLIELRKKMR 508



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/339 (33%), Positives = 175/339 (51%), Gaps = 31/339 (9%)

Query: 105 RPDLFSWALMITCYTRKG--------ELEKARELF------DLLPNKEDTACWNAMVAGY 150
           RPD F + ++I      G        +L    + F      D+   K   A WNAMV+GY
Sbjct: 27  RPDAFVYPILIKSAGTGGIGFHAHVLKLGHGSDAFVRNAVIDMYARK--VADWNAMVSGY 84

Query: 151 AKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLD 210
            K  +  +A+ L D MP +N+++W +M++GY K  ++  A ++F+ M ER VVSWN ML 
Sbjct: 85  WKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLS 144

Query: 211 GYVELDDLDSAWKFFQKI--PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN 268
           GY +    + A + F ++    +N V+W  M+S Y R G +  AR+LF+ MP RNVV WN
Sbjct: 145 GYAQNGLAEEALRLFDEMLGAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWN 204

Query: 269 AMIAAYVQRGQIEEAARLFIEMPER-----NPVSWTTMIDGYVRIAKLDEA----RRLLD 319
           +MIA Y Q GQ   A  LF EM        + V+  ++I     +  L+      R L +
Sbjct: 205 SMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTE 264

Query: 320 QMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
                +I+   AMI  Y +   M++A ++F ++ T DVV +N +I G+A  G   EAINL
Sbjct: 265 NQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINL 324

Query: 380 FRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
              M    +  D VT+  ++   +    +++  K+FE +
Sbjct: 325 MSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESI 363



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 168/327 (51%), Gaps = 45/327 (13%)

Query: 41  MSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF 100
           M  +    +N+M+S Y K      A+ LF+ MP+RN+++W +M+ GY     ++ AR  F
Sbjct: 69  MYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYF 128

Query: 101 DKMFRPDLFSWALMITCYTRKGELEKARELFD-LLPNKEDTACWNAMVAGYAKIGNYNEA 159
           D M    + SW  M++ Y + G  E+A  LFD +L    ++  WNAM++ Y ++G+ + A
Sbjct: 129 DCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMLGAYRNSVTWNAMISAYMRVGDLDSA 188

Query: 160 KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM--------EERDVVS------- 204
           +KL + MP +N+V+WNSM++GY +NG+  +A + F+ M        +E  +VS       
Sbjct: 189 RKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGH 248

Query: 205 --------W-----------------NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTM 239
                   W                 N M+  Y     ++ A + FQ++  ++VVS+ T+
Sbjct: 249 LGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTL 308

Query: 240 LSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
           +SG+A +G  +EA  L   M    +    V +  ++ A    G +EE  ++F  + +   
Sbjct: 309 ISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAI 368

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQMP 322
             +  M+D   R+ +L++A+R +++MP
Sbjct: 369 DHYACMVDLLGRVGELEDAKRTMERMP 395



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 169/335 (50%), Gaps = 18/335 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQM--SQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           V + N  ++   ++G  EEA+++F +M  + +N+VT+N+MISAY + G ++ ARKLF  M
Sbjct: 136 VVSWNAMLSGYAQNGLAEEALRLFDEMLGAYRNSVTWNAMISAYMRVGDLDSARKLFNTM 195

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKA 127
           P RN+V+WNSMIAGY  N +   A ELF +M       PD  +   +I+     G LE  
Sbjct: 196 PGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELG 255

Query: 128 RELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
             +   L     K   +  NAM+  Y++ G+  +AK++   M ++++VS+N+++SG+  +
Sbjct: 256 NWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAH 315

Query: 185 GE----MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
           G     ++L S   E   E D V++  +L        L+   K F+ I +  +  +  M+
Sbjct: 316 GHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAIDHYACMV 375

Query: 241 SGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPV 296
               R G + +A+R  ++MP+  +   + +++ A     Q+   E AA    E+   N  
Sbjct: 376 DLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSG 435

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
           ++  + + Y    +  +  R+ + M    +   T 
Sbjct: 436 NFILLSNIYASAGRWKDVERIREAMKKGGVKKTTG 470



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 152/287 (52%), Gaps = 20/287 (6%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM--PQRNLVS 79
           +T   K   +E A + F  M +++ V++N+M+S YA+NG   +A +LF++M    RN V+
Sbjct: 112 VTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMLGAYRNSVT 171

Query: 80  WNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF-DLLPNKE 138
           WN+MI+ Y+    +  AR+LF+ M   ++ +W  MI  Y + G+   A ELF +++  K+
Sbjct: 172 WNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKK 231

Query: 139 DTACWNAMVA--------GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
            T     MV+        G  ++GN+   + L +     +I   N+M+  Y++ G M  A
Sbjct: 232 LTPDEVTMVSVISACGHLGALELGNW-VVRFLTENQIKLSISGHNAMIFMYSRCGSMEDA 290

Query: 191 SKFFEAMEERDVVSWNLMLDGY------VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYA 244
            + F+ M  RDVVS+N ++ G+      VE  +L S  K  +   E + V+++ +L+  +
Sbjct: 291 KRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMK--EGGIEPDRVTFIGVLTACS 348

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
             G + E R++F+ +    +  +  M+    + G++E+A R    MP
Sbjct: 349 HAGLLEEGRKVFESIKDPAIDHYACMVDLLGRVGELEDAKRTMERMP 395



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 82/311 (26%), Positives = 154/311 (49%), Gaps = 13/311 (4%)

Query: 378 NLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHL 437
           N    M  + +  WN M++GY +      A  +F+ M   RN ++W A+++G+ + +   
Sbjct: 64  NAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVM-PERNVITWTAMVTGYAKVKDLE 122

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
            A + F  M +    + ++ L+          AL+L  ++       G   +    N++I
Sbjct: 123 AARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEM------LGAYRNSVTWNAMI 176

Query: 498 TMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM-EGVAPDP 556
           + Y + G + +A  LF      +V++WNS+IAGYA NG +  AI+LF+EM+  + + PD 
Sbjct: 177 SAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDE 236

Query: 557 VTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVK 616
           VT + V+SAC H+G ++ G  +   +TE   I+  +  +  MI + SR G +++A  + +
Sbjct: 237 VTMVSVISACGHLGALELGNWVVRFLTE-NQIKLSISGHNAMIFMYSRCGSMEDAKRVFQ 295

Query: 617 GMKIKPNAGIWGTLLG--ACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRW 674
            M  +     + TL+   A   H    +  ++  K   +EP + +   +L+   + AG  
Sbjct: 296 EMATRDVVS-YNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTAC-SHAGLL 353

Query: 675 DEVEKVRVSME 685
           +E  KV  S++
Sbjct: 354 EEGRKVFESIK 364



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 109/257 (42%), Gaps = 57/257 (22%)

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA--------------ELLFKDADPV 519
           G   H   +K G+ +D FV N++I MYA+     NA              + LF      
Sbjct: 44  GIGFHAHVLKLGHGSDAFVRNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPER 103

Query: 520 DVISWNSLI-------------------------------AGYAINGNATEAIKLFEEMV 548
           +VI+W +++                               +GYA NG A EA++LF+EM+
Sbjct: 104 NVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEML 163

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
             G   + VT+  ++SA   VG +D   KLF  M     +      +  MI   ++ G+ 
Sbjct: 164 --GAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVT-----WNSMIAGYAQNGQS 216

Query: 609 DEAFEMVKGM----KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQ-KTSCYAL 663
             A E+ K M    K+ P+     +++ AC     ++LG   V  L+E + +   S +  
Sbjct: 217 AMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNA 276

Query: 664 LSNMHAEAGRWDEVEKV 680
           +  M++  G  ++ ++V
Sbjct: 277 MIFMYSRCGSMEDAKRV 293


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 211/679 (31%), Positives = 336/679 (49%), Gaps = 80/679 (11%)

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           D F    ++  Y+    LE AR +FD     +   C NAM+ GY + G Y E  +L   M
Sbjct: 63  DQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLC-NAMLCGYLQSGRYRETLELFGLM 121

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFF- 225
            S+N+                           E D  S    L       D +   +   
Sbjct: 122 RSRNL---------------------------EVDSCSCTFALKACASSLDYEMGMEIIS 154

Query: 226 ---QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEE 282
              +K  E+N     +M+S   + G++ EA+R+FD MP ++VV WN++I  YVQ G  + 
Sbjct: 155 SAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDV 214

Query: 283 AARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEAR----RLLDQMPYKNIAAQTAMIS 334
           A +LF EM     + +P++ T++I     I  L   +     +L      +I   T+ + 
Sbjct: 215 AFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVD 274

Query: 335 GYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVT 390
            Y +   ++ A  +F K+ T ++V WN MI G  + G + E+ +LF ++V      D+ T
Sbjct: 275 MYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTT 334

Query: 391 WNTMIAG----------------------------------YAQIRQMDDAVKIFEEMGK 416
             +++ G                                  Y++   +  A  +F  M K
Sbjct: 335 IVSLLQGCSQTASLATGKILHGCAIRSFESNLILSTAIVDLYSKCGSLKQATFVFNRM-K 393

Query: 417 RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ 476
            RN ++W A++ G  QN    DAL++F  M +EG  A+  T    + +CAHL +L+ GR 
Sbjct: 394 DRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRS 453

Query: 477 IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD-PVDVISWNSLIAGYAING 535
           IH    + G+  D+    +L+ MYAKCG+I  AE +F       DV+ WNS+I GY ++G
Sbjct: 454 IHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHG 513

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHY 595
           +  +A+ ++ +M+ EG+ P+  TF+ +LSACSH  LV+ G+ LF  M   + I P+ +HY
Sbjct: 514 HGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHY 573

Query: 596 ACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEP 655
           AC++DLLSRAGR +EA  +++ M  +P   +   LL  CR H+NI LG    +KL  L+ 
Sbjct: 574 ACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDA 633

Query: 656 QKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQC 715
                Y +LSN++AEA RWD+V+ +R  M   G +K PG S +E  N +HTF +GD    
Sbjct: 634 MNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHP 693

Query: 716 RTAEICNTLKTLAAQIRNT 734
              EI + L++L + +  +
Sbjct: 694 NWEEIYHFLESLRSAVETS 712



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 198/405 (48%), Gaps = 29/405 (7%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           +KN    +SMIS   K G++ +A+++F+ MP +++V WNS+I GY+       A +LF +
Sbjct: 162 EKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFE 221

Query: 103 M----FRPDLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVAGYAKIGN 155
           M     +P   +   +I      G L+  + +      L    D     + V  Y+K+G+
Sbjct: 222 MHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGD 281

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDG 211
              A+ +   MP++N+VSWN+M+SG  +NG +  +   F  +       D+ +   +L G
Sbjct: 282 IESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQG 341

Query: 212 YVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
             +   L +  K          E N++    ++  Y++ G + +A  +F++M  RNV+ W
Sbjct: 342 CSQTASLATG-KILHGCAIRSFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITW 400

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRL---LDQ 320
            AM+    Q G  E+A RLF +M E     N V++ +++     +  L   R +   L +
Sbjct: 401 TAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFR 460

Query: 321 MPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIG-THDVVCWNVMIKGYAQCGRMDEAIN 378
           + +  +I   TA++  Y +  +++ A +IF     + DVV WN MI GY   G   +A+ 
Sbjct: 461 LGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVG 520

Query: 379 LFRQMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRN 419
           ++ +M+ + +     T+ ++++  +  R ++  + +F  M +  N
Sbjct: 521 IYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHN 565



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 121/507 (23%), Positives = 217/507 (42%), Gaps = 96/507 (18%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL--------VSWNS 82
           +E A  +F Q  Q   +  N+M+  Y ++GR  +  +LF  M  RNL         +  +
Sbjct: 80  LEAARYVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKA 139

Query: 83  MIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTAC 142
             +   +   ++      +K    + F  + MI+   + G++ +A+ +FD +PNK D  C
Sbjct: 140 CASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNK-DVVC 198

Query: 143 WNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASKFFEAM- 197
           WN+++ GY + G ++ A +L   M    I    ++  S++      G + L       + 
Sbjct: 199 WNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVL 258

Query: 198 ---EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
                 D++     +D Y ++ D++SA   F K+P +N+VSW  M+SG  RNG + E+  
Sbjct: 259 GLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFD 318

Query: 255 LFDQM----------------------------------PIR----NVVAWNAMIAAYVQ 276
           LF ++                                   IR    N++   A++  Y +
Sbjct: 319 LFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRSFESNLILSTAIVDLYSK 378

Query: 277 RGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGY 336
            G +++A  +F  M +RN ++WT M+ G  +    ++A RL  QM  + IAA +      
Sbjct: 379 CGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSL 438

Query: 337 VQN-------KRMDEANQIFDKIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQ-MVNKD 387
           V +       KR    +    ++G   D+V    ++  YA+CG+++ A  +F    ++KD
Sbjct: 439 VHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKD 498

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMT 447
           +V WN+MI GY        AV I+ +                                M 
Sbjct: 499 VVLWNSMITGYGMHGHGYQAVGIYHK--------------------------------MI 526

Query: 448 QEGKKADHSTLACALSACAHLAALQLG 474
           +EG K + +T    LSAC+H   ++ G
Sbjct: 527 EEGLKPNQTTFLSLLSACSHSRLVEQG 553



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 171/355 (48%), Gaps = 33/355 (9%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR----NLVSWNS 82
           K G +E A  +F +M  +N V++N+MIS   +NG V ++  LF ++ +     +L +  S
Sbjct: 278 KMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVS 337

Query: 83  MIAGYLHNDKVKEARELFD---KMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKED 139
           ++ G      +   + L     + F  +L     ++  Y++ G L++A  +F+ + ++ +
Sbjct: 338 LLQGCSQTASLATGKILHGCAIRSFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDR-N 396

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEM----HLAS 191
              W AM+ G A+ G+  +A +L   M  + I    V++ S++      G +     +  
Sbjct: 397 VITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHG 456

Query: 192 KFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSWVTMLSGYARNGRML 250
             F      D+V+   ++D Y +   ++ A + F      ++VV W +M++GY  +G   
Sbjct: 457 HLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGY 516

Query: 251 EARRLFDQM------PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN----PVS--W 298
           +A  ++ +M      P  N   + ++++A      +E+   LF  M ER+    P+   +
Sbjct: 517 QAVGIYHKMIEEGLKP--NQTTFLSLLSACSHSRLVEQGISLFNSM-ERDHNIRPIEKHY 573

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKI 352
             ++D   R  + +EA+ L+++MP++   A   A++SG   +K ++   Q  DK+
Sbjct: 574 ACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKL 628



 Score = 40.4 bits (93), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 67/161 (41%), Gaps = 6/161 (3%)

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
           +  H   I +    D FV   L+  Y+    ++ A  +F        +  N+++ GY  +
Sbjct: 49  KSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQS 108

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEH 594
           G   E ++LF  M    +  D  +    L AC+     + G+++     E   +E     
Sbjct: 109 GRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVE-KGMEKNRFV 167

Query: 595 YACMIDLLSRAGRLDEAFEMVKGMKIKPNAGI--WGTLLGA 633
            + MI  L + G++ EA  +  GM   PN  +  W +++G 
Sbjct: 168 GSSMISFLVKFGKIGEAQRVFDGM---PNKDVVCWNSIIGG 205


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 228/732 (31%), Positives = 386/732 (52%), Gaps = 79/732 (10%)

Query: 22  ITQLGKSGRVEEAIKIFSQ-MSQKNTVTYN-SMISAYAKNGRVNDARKLFEQMPQRNLVS 79
           + QLG+S R     K F+Q +S    V +N     + +K   ++ +++LF++ PQ+ L  
Sbjct: 4   VRQLGRSKRQ----KRFTQSLSGPYDVVFNPKTSLSSSKLSTLSHSQQLFDETPQQGLSR 59

Query: 80  WNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKED 139
            N ++  +  ND+ KEA  LF  + R    +    ++C      L+    LFD +  K+ 
Sbjct: 60  NNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCV-----LKVCGCLFDRIVGKQ- 113

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE 199
                                           V    +  G+ +                
Sbjct: 114 --------------------------------VHCQCIKCGFVE---------------- 125

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM 259
            DV     ++D Y++ + ++   + F ++  +NVVSW ++L+GY +NG   +A +LF QM
Sbjct: 126 -DVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQM 184

Query: 260 PIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS----WTTMIDGYVRIAKL 311
            +     N   + A++      G +E+  ++   + +    S      +M++ Y +   +
Sbjct: 185 QLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMV 244

Query: 312 DEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV----VCWNVMIKGY 367
            +A+ + D M  +N  +  +MI+G+V N    EA ++F ++    V      +  +IK  
Sbjct: 245 SDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLC 304

Query: 368 AQCGRMDEAINLFRQMVNK----DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
           A    M  A  L  Q++      D+     ++  Y++  ++DDA K+F  M   +N VSW
Sbjct: 305 ANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSW 364

Query: 424 NALISGFLQNEFHLDALKIFVLMT-QEGKKADHSTLACALSACAH-LAALQLGRQIHHLA 481
            A+ISG++QN     A+ +F  M  +EG + +  T +  L+ACA   A+++ G+Q H  +
Sbjct: 365 TAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCS 424

Query: 482 IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
           IKSG+ N L V ++L+TMYAK G I++A  +FK     D++SWNS+I+GYA +G   +++
Sbjct: 425 IKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSL 484

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601
           K+FEEM  + +  D +TFIGV+SAC+H GLV+ G + F+ M + Y I P +EHY+CM+DL
Sbjct: 485 KIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDL 544

Query: 602 LSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCY 661
            SRAG L++A +++  M     A IW TLL ACR+H N++LG +A EKL  L+PQ ++ Y
Sbjct: 545 YSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAY 604

Query: 662 ALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEIC 721
            LLSN++A AG W E  KVR  M+    +K+ G SWIEVKN+  +F++GD    ++  I 
Sbjct: 605 VLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIY 664

Query: 722 NTLKTLAAQIRN 733
             L+ L+ ++++
Sbjct: 665 LKLEELSIRLKD 676



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 166/338 (49%), Gaps = 27/338 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F  N  +    KS  V +A  +F  M  +N V++NSMI+ +  NG   +A +LF +M
Sbjct: 226 STIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRM 285

Query: 73  PQRNLVSWNSMIAGYLH-NDKVKE---ARELFDKMFRP----DLFSWALMITCYTRKGEL 124
               +    ++ A  +     +KE   A++L  ++ +     DL     ++  Y++  E+
Sbjct: 286 RLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEI 345

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK-----NIVSWNSMLS 179
           + A +LF ++   ++   W A+++GY + G  + A  L   M  +     N  +++S+L+
Sbjct: 346 DDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLN 405

Query: 180 GYTKNGEMHLASKFFEAMEERDVVSWNLMLDG-----YVELDDLDSAWKFFQKIPEQNVV 234
                       K F +   +   S  L +       Y +  +++SA + F++  ++++V
Sbjct: 406 ACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLV 465

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEM 290
           SW +M+SGYA++G   ++ ++F++M  +N+    + +  +I+A    G + E  R F  M
Sbjct: 466 SWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLM 525

Query: 291 PERNPV-----SWTTMIDGYVRIAKLDEARRLLDQMPY 323
            +   +      ++ M+D Y R   L++A  L+++MP+
Sbjct: 526 VKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPF 563



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 90/179 (50%), Gaps = 16/179 (8%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V N     T   + G+   +  I S  S    V+ +++++ YAK G +  A ++F++ 
Sbjct: 401 SSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVS-SALVTMYAKRGNIESANEVFKRQ 459

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL----FSWALMITCYTRKGELEKAR 128
             R+LVSWNSMI+GY  +   K++ ++F++M   +L     ++  +I+  T  G + + +
Sbjct: 460 VDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQ 519

Query: 129 ELFDLL-------PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP-SKNIVSWNSMLS 179
             FDL+       P  E  +C   MV  Y++ G   +A  L++ MP       W ++L+
Sbjct: 520 RYFDLMVKDYHIVPTMEHYSC---MVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLA 575


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 194/565 (34%), Positives = 304/565 (53%), Gaps = 61/565 (10%)

Query: 217 DLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI----RNVVAWNAMIA 272
           +L  A   F+ I + N   W TM+ G + +   + A   + +M +     N   +  ++ 
Sbjct: 81  NLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLK 140

Query: 273 AYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA 328
           +  + G  +E  ++   +     E +P   T++I+ Y +  +L  A  +  +   ++  +
Sbjct: 141 SCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVS 200

Query: 329 QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
            TA+I+GY     +D+A ++F++I   D V WN MI GYAQ GR +EA+  F++M   ++
Sbjct: 201 FTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANV 260

Query: 389 V--------------------------TW-------------NTMIAGYAQIRQMDDAVK 409
                                      +W             N +I  Y++   +D A  
Sbjct: 261 APNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARD 320

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           +FE + ++ + +SWN +I G+     + +AL +F  M Q   + +  T    L ACA+L 
Sbjct: 321 LFEGICEK-DIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLG 379

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVG-------NSLITMYAKCGRIQNAELLFKDADPVDVI 522
           AL LG+ IH       Y++  F+G        SLI MYAKCG I+ A+ +F    P  + 
Sbjct: 380 ALDLGKWIH------AYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLG 433

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           SWN++I+G A++G+A  A++LF +M  EG  PD +TF+GVLSACSH GLV+ G + F  M
Sbjct: 434 SWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSM 493

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKL 642
            E Y I P ++HY CMIDLL RAG  DEA  ++K M++KP+  IWG+LLGACR+H N++L
Sbjct: 494 VEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVEL 553

Query: 643 GRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKN 702
           G  A + L ELEP+    Y LLSN++A AGRWD+V ++R  +   G +K PGCS IEV +
Sbjct: 554 GEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDS 613

Query: 703 QIHTFLSGDPKQCRTAEICNTLKTL 727
            +H FL GD    ++ +I   L  +
Sbjct: 614 VVHEFLVGDKVHEQSQDIYKMLDEI 638



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 128/513 (24%), Positives = 221/513 (43%), Gaps = 68/513 (13%)

Query: 55  AYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFS 110
           A +  G ++ A  LFE + Q N   WN+MI G   +     A + + +M      P+ ++
Sbjct: 75  AISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYT 134

Query: 111 WALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP 167
           +  ++    + G  ++ +++      L  + D     +++  YA+ G    A+ +     
Sbjct: 135 FPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSS 194

Query: 168 SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK 227
            ++ VS+ ++++GYT  G +  A + FE +  RD VSWN M+ GY +    + A  FFQ+
Sbjct: 195 LRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQE 254

Query: 228 IPEQNVV----SWVTMLSGYARNGRMLEAR----RLFDQMPIRNVVAWNAMIAAYVQRGQ 279
           +   NV     + VT+LS  A++G +         + D     N+   NA+I  Y + G 
Sbjct: 255 MKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGD 314

Query: 280 IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISG 335
           +++A  LF  + E++ +SW  MI GY  +    EA  L  +M   N+        +++  
Sbjct: 315 LDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPA 374

Query: 336 YVQNKRMDEANQI---FDK--IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
                 +D    I    DK  +G  +   W  +I  YA+CG ++ A  +F  M  K + +
Sbjct: 375 CAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGS 434

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
           WN MI+G A     + A+++F +                                M  EG
Sbjct: 435 WNAMISGLAMHGHANMALELFRQ--------------------------------MRDEG 462

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSL------ITMYAKCG 504
            + D  T    LSAC+H   ++LGRQ       S  V D  +   L      I +  + G
Sbjct: 463 FEPDDITFVGVLSACSHAGLVELGRQCF-----SSMVEDYDISPKLQHYGCMIDLLGRAG 517

Query: 505 RIQNAELLFKDAD-PVDVISWNSLIAGYAINGN 536
               AE L K+ +   D   W SL+    ++GN
Sbjct: 518 LFDEAEALMKNMEMKPDGAIWGSLLGACRVHGN 550



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 110/434 (25%), Positives = 195/434 (44%), Gaps = 66/434 (15%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F     I    ++G +  A  +FS+ S ++ V++ ++I+ Y   G ++DAR+LFE++P R
Sbjct: 168 FVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVR 227

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRP----------------------DLFSWA- 112
           + VSWN+MIAGY  + + +EA   F +M R                       +L +W  
Sbjct: 228 DAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVR 287

Query: 113 ----------------LMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNY 156
                            +I  Y++ G+L+KAR+LF+ +  K D   WN M+ GY+ + +Y
Sbjct: 288 SWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEK-DIISWNVMIGGYSHMNSY 346

Query: 157 NEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS------WN 206
            EA  L   M   N+    V++ S+L      G + L  K+  A  ++  +       W 
Sbjct: 347 KEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLG-KWIHAYIDKKFLGLTNTSLWT 405

Query: 207 LMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV-- 264
            ++D Y +  ++++A + F  +  +++ SW  M+SG A +G    A  LF QM       
Sbjct: 406 SLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEP 465

Query: 265 --VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVRIAKLDEARRL 317
             + +  +++A    G +E   + F  M E   +S     +  MID   R    DEA  L
Sbjct: 466 DDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEAL 525

Query: 318 LDQMPYKNIAAQTAMISGYVQ---NKRMDE--ANQIFDKIGTHDVVCWNVMIKGYAQCGR 372
           +  M  K   A    + G  +   N  + E  A  +F+ +   +   + ++   YA  GR
Sbjct: 526 MKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFE-LEPENPGAYVLLSNIYATAGR 584

Query: 373 MDEAINLFRQMVNK 386
            D+   +  ++ +K
Sbjct: 585 WDDVARIRTKLNDK 598



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 9/161 (5%)

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYA--KCGRIQNAEL 511
           +H +L   LS C     L   +QIH   IK+G  N  F  + LI   A    G +  A L
Sbjct: 32  NHPSLTL-LSTCKSFQNL---KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALL 87

Query: 512 LFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
           LF+  +  +   WN++I G +++ +   AI  +  M++ GV P+  TF  +L +C+ VG 
Sbjct: 88  LFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGA 147

Query: 572 VDGGLKLFECMTEV-YAIEPLVEHYACMIDLLSRAGRLDEA 611
              G ++   + ++    +P V  +  +I++ ++ G L  A
Sbjct: 148 TQEGKQIHGHVLKLGLESDPFV--HTSLINMYAQNGELGYA 186


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 199/629 (31%), Positives = 326/629 (51%), Gaps = 70/629 (11%)

Query: 160 KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLD 219
           K  L A P+  +   N +L+ Y K+G +  A + F+ M + ++ + N +L        + 
Sbjct: 40  KTFLQAPPTFLL---NHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVP 96

Query: 220 SAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM-------PIRNVVAWNAMIA 272
              + F  +PE++ VS+  +++G++  G    + +L+  +       P R  ++   M+A
Sbjct: 97  DMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVA 156

Query: 273 A-----------YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           +           + Q  ++   A  F+  P         ++D Y ++  + +ARR+  +M
Sbjct: 157 SALSDRALGHSVHCQVLRLGFGAYAFVGSP---------LVDMYAKMGLIRDARRVFQEM 207

Query: 322 PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
             K +     +I+G ++ K +++A  +F  +   D + W  M+ G  Q G   EA+++FR
Sbjct: 208 EAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFR 267

Query: 382 QM----VNKDIVTWNTMIAG-----------------------------------YAQIR 402
           +M    V  D  T+ +++                                     Y++ R
Sbjct: 268 RMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCR 327

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
            +  A  +F  M   RN +SW A+I G+ QN    +A++ F  M  +G K D  TL   +
Sbjct: 328 SIRLAEAVFRRM-TCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVI 386

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
           S+CA+LA+L+ G Q H LA+ SG +  + V N+L+T+Y KCG I++A  LF +    D +
Sbjct: 387 SSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQV 446

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           SW +L+ GYA  G A E I LFE+M+  G+ PD VTFIGVLSACS  GLV+ G   F+ M
Sbjct: 447 SWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSM 506

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKL 642
            + + I P+ +HY CMIDL SR+GR  EA E +K M   P+A  W TLL +CR+  N+++
Sbjct: 507 QKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEI 566

Query: 643 GRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKN 702
           G+ A E L E +PQ  + Y LL +MHA  G+W EV  +R  M     +K+PGCSWI+ KN
Sbjct: 567 GKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKN 626

Query: 703 QIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           ++H F + D     ++ I   L+ L +++
Sbjct: 627 KVHIFSADDQSHPFSSRIYEKLEWLNSKM 655



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 142/606 (23%), Positives = 258/606 (42%), Gaps = 106/606 (17%)

Query: 26  GKSG-RVEEAIKIF---SQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           G++G RV  A+      + +    T   N +++AYAK+GR+  AR++F++MP  NL + N
Sbjct: 24  GRTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRN 83

Query: 82  SMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKED-- 139
           ++++   H+  V +   LF  M   D  S+  +IT ++  G   ++ +L+  L  +E   
Sbjct: 84  ALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVR 143

Query: 140 ----TACWNAMVAGYAK---IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
               T     MVA       +G+    + L     +   V  + ++  Y K G +  A +
Sbjct: 144 PTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVG-SPLVDMYAKMGLIRDARR 202

Query: 193 FFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA 252
            F+ ME + VV +N ++ G +    ++ A   FQ + +++ ++W TM++G  +NG  LEA
Sbjct: 203 VFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEA 262

Query: 253 RRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDG 304
             +F +M    V      + +++ A      +EE  ++   +     E N    + ++D 
Sbjct: 263 LDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDM 322

Query: 305 YVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF-----DKIGTHD--- 356
           Y +   +  A  +  +M  +NI + TAMI GY QN   +EA + F     D I   D   
Sbjct: 323 YSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTL 382

Query: 357 -------------------------------VVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
                                          +   N ++  Y +CG +++A  LF +M  
Sbjct: 383 GSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF 442

Query: 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVL 445
            D V+W  ++ GYAQ  +  + + +FE+M                L N            
Sbjct: 443 HDQVSWTALVTGYAQFGKAKETIDLFEKM----------------LAN------------ 474

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLG------RQIHHLAIKSGYVNDLFVGNSLITM 499
               G K D  T    LSAC+    ++ G       Q  H  +    ++D +    +I +
Sbjct: 475 ----GLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVP---IDDHY--TCMIDL 525

Query: 500 YAKCGRIQNAELLFKD-ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           Y++ GR + AE   K      D   W +L++   + GN  E  K   E ++E    +P +
Sbjct: 526 YSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGN-MEIGKWAAENLLETDPQNPAS 584

Query: 559 FIGVLS 564
           ++ + S
Sbjct: 585 YVLLCS 590



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/467 (24%), Positives = 203/467 (43%), Gaps = 61/467 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            F  N  +T   KSGR+  A ++F +M   N  T N+++SA A +  V D  +LF  MP+
Sbjct: 48  TFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPE 107

Query: 75  RNLVSWNSMIAGY----------------LHNDKVKEARELFDKM--------------- 103
           R+ VS+N++I G+                L  + V+  R     M               
Sbjct: 108 RDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHS 167

Query: 104 ---------FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIG 154
                    F    F  + ++  Y + G +  AR +F  +  K     +N ++ G  +  
Sbjct: 168 VHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKT-VVMYNTLITGLLRCK 226

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLD 210
              +AK L   M  ++ ++W +M++G T+NG    A   F  M       D  ++  +L 
Sbjct: 227 MIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILT 286

Query: 211 GYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA 266
               L  L+   +    I     E NV     ++  Y++   +  A  +F +M  RN+++
Sbjct: 287 ACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIIS 346

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRL----L 318
           W AMI  Y Q    EEA R F EM     + +  +  ++I     +A L+E  +     L
Sbjct: 347 WTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLAL 406

Query: 319 DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
                + I    A+++ Y +   +++A+++FD++  HD V W  ++ GYAQ G+  E I+
Sbjct: 407 VSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETID 466

Query: 379 LFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
           LF +M    +  D VT+  +++  ++   ++     F+ M K    V
Sbjct: 467 LFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIV 513



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/406 (23%), Positives = 182/406 (44%), Gaps = 48/406 (11%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G+Y F  +  +    K G + +A ++F +M  K  V YN++I+   +   + DA+ LF+ 
Sbjct: 178 GAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQL 237

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKA 127
           M  R+ ++W +M+ G   N    EA ++F +M       D +++  ++T       LE+ 
Sbjct: 238 MVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEG 297

Query: 128 RELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
           +++   +     +++    +A+V  Y+K  +   A+ +   M  +NI+SW +M+ GY +N
Sbjct: 298 KQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQN 357

Query: 185 GEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT-- 238
                A + F  M+    + D  +   ++     L  L+   +F        ++ ++T  
Sbjct: 358 ACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVS 417

Query: 239 --MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
             +++ Y + G + +A RLFD+M   + V+W A++  Y Q G+ +E   LF +M     +
Sbjct: 418 NALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKM-----L 472

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI-GTH 355
           +     DG   I  L    R                 +G V+     +    FD +   H
Sbjct: 473 ANGLKPDGVTFIGVLSACSR-----------------AGLVE-----KGCDYFDSMQKDH 510

Query: 356 DVVC----WNVMIKGYAQCGRMDEAINLFRQMVNK-DIVTWNTMIA 396
            +V     +  MI  Y++ GR  EA    +QM +  D   W T+++
Sbjct: 511 GIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLS 556


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 175/415 (42%), Positives = 258/415 (62%), Gaps = 5/415 (1%)

Query: 319 DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG-THDVVCWNVMIKGYAQCGRMDEAI 377
           +Q     +    A I+   Q K   +A+    K+G   DVV    ++  YA+CG +++A 
Sbjct: 9   NQFTLSTVVKACASIASLEQGK---QAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAG 65

Query: 378 NLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHL 437
           ++F +M  +   TWN MI G+AQ R M  A+K+F EM +R + VSW A+I+G+ QN +  
Sbjct: 66  HVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSER-DVVSWTAVIAGYAQNGYGD 124

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
           ++L +F  M + G K+D   +   LSACA LAAL+LGRQ H   ++SG+  D+ VG++L+
Sbjct: 125 ESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALV 184

Query: 498 TMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
            MYAK G +++A  +F      + +SWNS+I G A +G   +A+ LFE+M+  G+ P+ +
Sbjct: 185 DMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEI 244

Query: 558 TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKG 617
           +F+GVLSACSH GLV+ G   F  MT+ Y I P V HY CMIDLL RAG LDEA   + G
Sbjct: 245 SFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFING 304

Query: 618 MKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEV 677
           M ++P+  +WG LLGACR+H N +L +   E L  +E Q    Y LLSN++A AG+WD+ 
Sbjct: 305 MPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQWDDA 364

Query: 678 EKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            KVR  M+  G  KQPG SWIEVK  +H F++G+    +  EI   L++L+ +++
Sbjct: 365 AKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKMK 419



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 155/331 (46%), Gaps = 46/331 (13%)

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIE 289
           E +VV    ++  YAR G + +A  +FD+M  R+   WNAMI  + Q   +++A +LF E
Sbjct: 42  ESDVVVQTALVHMYARCGSLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYE 101

Query: 290 MPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMD----EA 345
           M ER+ VSWT +I GY +    DE+  + +QM    + +    I G V +   D    E 
Sbjct: 102 MSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDR-FIMGSVLSACADLAALEL 160

Query: 346 NQIFDKIGTH-----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQ 400
            + F           D+V  + ++  YA+ G M++A  +F +M  ++ V+WN++I G AQ
Sbjct: 161 GRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQ 220

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
             + +DAV +FE+                                M Q G K +  +   
Sbjct: 221 HGRGNDAVLLFEQ--------------------------------MLQAGIKPNEISFVG 248

Query: 461 ALSACAHLAALQLGRQIHHLAIKS-GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
            LSAC+H   +  GR   +L  ++ G V D+     +I +  + G +  AE  F +  PV
Sbjct: 249 VLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAE-NFINGMPV 307

Query: 520 --DVISWNSLIAGYAINGNATEAIKLFEEMV 548
             DV  W +L+    I+GN   A ++ E ++
Sbjct: 308 EPDVSVWGALLGACRIHGNTELAKRIAEHLL 338



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 174/372 (46%), Gaps = 32/372 (8%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V  Q   +    + G +E+A  +F +MS+++T T+N+MI+ +A+N  +  A KLF +M
Sbjct: 43  SDVVVQTALVHMYARCGSLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEM 102

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKAR 128
            +R++VSW ++IAGY  N    E+  +F++M     + D F    +++       LE  R
Sbjct: 103 SERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGR 162

Query: 129 ELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
           +    +       D    +A+V  YAK G+  +A ++ D MP +N VSWNS+++G  ++G
Sbjct: 163 QFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHG 222

Query: 186 EMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQ-----NVVSW 236
             + A   FE M +  +    +S+  +L        ++    +F  + +      +V  +
Sbjct: 223 RGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHY 282

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLF-------- 287
             M+    R G + EA    + MP+  +V  W A++ A    G  E A R+         
Sbjct: 283 TCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEV 342

Query: 288 ----IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT---AMISGYVQNK 340
               I +   N  +     D   ++ KL + R ++ Q  Y  I  +T   A ++G   + 
Sbjct: 343 QIAGIYVLLSNIYAAAGQWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHP 402

Query: 341 RMDEANQIFDKI 352
           ++ E ++  + +
Sbjct: 403 QLKEIHEFLESL 414



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 152/320 (47%), Gaps = 23/320 (7%)

Query: 99  LFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGN 155
           +  K  +P+ F+ + ++        LE+ ++  + +     + D     A+V  YA+ G+
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
             +A  + D M  ++  +WN+M++G+ +N +M  A K F  M ERDVVSW  ++ GY + 
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 216 DDLDSAWKFFQKIPEQNVVS----WVTMLSGYARNGRMLEARRLFDQMPIR-----NVVA 266
              D +   F ++ +  + S      ++LS  A +   LE  R F    ++     ++V 
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACA-DLAALELGRQFHAYVVQSGFALDIVV 179

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
            +A++  Y + G +E+A ++F +MP+RN VSW ++I G  +  + ++A  L +QM    I
Sbjct: 180 GSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGI 239

Query: 327 AAQ----TAMISGYVQNKRMDEANQIFDKIGTH-----DVVCWNVMIKGYAQCGRMDEAI 377
                    ++S       ++E    F+ +  +     DV  +  MI    + G +DEA 
Sbjct: 240 KPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAE 299

Query: 378 NLFRQM-VNKDIVTWNTMIA 396
           N    M V  D+  W  ++ 
Sbjct: 300 NFINGMPVEPDVSVWGALLG 319



 Score =  102 bits (254), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 147/296 (49%), Gaps = 17/296 (5%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           + + V   +++  YA+ G + DA  +F++M +R+  +WN+MI G+  N  +K+A +LF +
Sbjct: 42  ESDVVVQTALVHMYARCGSLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYE 101

Query: 103 MFRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEA 159
           M   D+ SW  +I  Y + G  +++  +F+ +     K D     ++++  A +      
Sbjct: 102 MSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELG 161

Query: 160 KK----LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
           ++    ++ +  + +IV  ++++  Y K+G M  A + F+ M +R+ VSWN ++ G  + 
Sbjct: 162 RQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQH 221

Query: 216 DDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARNGRMLEARRLFDQMP-----IRNVVA 266
              + A   F+++ +     N +S+V +LS  +  G + E R  F+ M      + +V  
Sbjct: 222 GRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSH 281

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDE-ARRLLDQM 321
           +  MI    + G ++EA      MP    VS    + G  RI    E A+R+ + +
Sbjct: 282 YTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHL 337



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 126/254 (49%), Gaps = 37/254 (14%)

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
           M  +G K +  TL+  + ACA +A+L+ G+Q H+  IK G+ +D+ V  +L+ MYA+CG 
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 506 IQNAEL-------------------------------LFKDADPVDVISWNSLIAGYAIN 534
           +++A                                 LF +    DV+SW ++IAGYA N
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV-YAIEPLVE 593
           G   E++ +F +M   G+  D      VLSAC+ +  ++ G +    + +  +A++ +V 
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVG 180

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL--S 651
             + ++D+ +++G +++A ++   M  + N   W +++  C  H       +  E++  +
Sbjct: 181 --SALVDMYAKSGSMEDACQVFDKMP-QRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQA 237

Query: 652 ELEPQKTSCYALLS 665
            ++P + S   +LS
Sbjct: 238 GIKPNEISFVGVLS 251


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 200/645 (31%), Positives = 331/645 (51%), Gaps = 56/645 (8%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF----FEAMEE 199
           N ++  Y +  +  +A KL D MP  N +S+ ++  GY+++ + H A  F    F+   E
Sbjct: 74  NILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHE 133

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSGYARNGRMLEARRL 255
            +   +  +L   V +D     W     +       +      ++  Y+  G +  AR +
Sbjct: 134 VNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHV 193

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PERNPVSWT---------- 299
           FD +  +++V+W  M+A Y +    EE+ +LF +M      P    +S            
Sbjct: 194 FDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAF 253

Query: 300 -----------------------TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGY 336
                                   +++ Y +  ++ +A+RL ++MP  ++   + MI+ Y
Sbjct: 254 NVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARY 313

Query: 337 VQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM--------VNKDI 388
            Q+ R  EA  +F ++    VV  N       Q      +++L +Q+        +N ++
Sbjct: 314 AQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNV 373

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
              N ++  YA+  ++++++K+FEE+  R N V+WN +I G++Q      A+ +F  M +
Sbjct: 374 FVSNAIMDVYAKCGEIENSMKLFEELPDR-NDVTWNTIIVGYVQLGDGERAMNLFTHMLE 432

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
              +    T +  L A A LAAL+ G QIH L IK+ Y  D  V NSLI MYAKCGRI +
Sbjct: 433 HDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRIND 492

Query: 509 AELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
           A L F   +  D +SWN++I GY+++G + EA+ LF+ M      P+ +TF+GVLSACS+
Sbjct: 493 ARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSN 552

Query: 569 VGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWG 628
            GL+  G   FE M++ Y I+P +EHY CM+ LL R GR DEA +++  +  +P+  +W 
Sbjct: 553 AGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWR 612

Query: 629 TLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688
            LLGAC +H+ + LGR+  + + E+EP   + + LLSNM+A AGRWD V  VR  M+   
Sbjct: 613 ALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKK 672

Query: 689 AQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
            +K+PG SW+E +  +H F  GD        IC  L+ L  + R+
Sbjct: 673 VRKEPGLSWVENQGVVHYFSVGDTSHPDIKLICAMLEWLNKKTRD 717



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 112/463 (24%), Positives = 215/463 (46%), Gaps = 64/463 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDA----RKLFE 70
           +F QN  +    +S  +++A K+F +M Q NT+++ ++   Y+++ + + A     ++F+
Sbjct: 70  LFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFK 129

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEK 126
           +  + N   + +++   +  D       L   +++     D F    +I  Y+ +G ++ 
Sbjct: 130 EGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDV 189

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------PSKNIVS------- 173
           AR +FD +  K D   W  MVA YA+   Y E+ +L + M      P+   +S       
Sbjct: 190 ARHVFDDICCK-DMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCL 248

Query: 174 ----WN----------------------SMLSGYTKNGEMHLASKFFEAMEERDVVSWNL 207
               +N                      ++L  Y K+GE+  A + FE M + D++ W+L
Sbjct: 249 GLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSL 308

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVV----SWVTMLSGYARNGRMLEARRLFDQMPI-- 261
           M+  Y + D    A   F ++ + +VV    ++ ++L   A +  +   +++   +    
Sbjct: 309 MIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFG 368

Query: 262 --RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLD 319
              NV   NA++  Y + G+IE + +LF E+P+RN V+W T+I GYV++   + A  L  
Sbjct: 369 LNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFT 428

Query: 320 QMPYKNIAAQTAMISGYVQNK----RMDEANQI----FDKIGTHDVVCWNVMIKGYAQCG 371
            M   ++       S  ++       ++   QI       +   D V  N +I  YA+CG
Sbjct: 429 HMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCG 488

Query: 372 RMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           R+++A   F +M  +D V+WN MI GY+      +A+ +F+ M
Sbjct: 489 RINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMM 531



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 184/392 (46%), Gaps = 30/392 (7%)

Query: 26  GKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIA 85
            KSG + +A ++F +M + + + ++ MI+ YA++ R  +A  LF +M Q ++V  N   A
Sbjct: 283 AKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFA 342

Query: 86  GYLHNDKVKEARELFDKM--------FRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
             L       + +L  ++           ++F    ++  Y + GE+E + +LF+ LP++
Sbjct: 343 SVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDR 402

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGE----MHL 189
            D   WN ++ GY ++G+   A  L   M   ++    V+++S+L            + +
Sbjct: 403 NDVT-WNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQI 461

Query: 190 ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRM 249
            S   + M  +D V  N ++D Y +   ++ A   F K+ +++ VSW  M+ GY+ +G  
Sbjct: 462 HSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMS 521

Query: 250 LEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-----SWTT 300
           +EA  LFD M       N + +  +++A    G + +    F  M +   +      +T 
Sbjct: 522 MEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTC 581

Query: 301 MIDGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMDEAN---QIFDKIGTHD 356
           M+    R+ + DEA +L+ ++ Y+ ++    A++   V +K++D      Q   ++  HD
Sbjct: 582 MVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHD 641

Query: 357 VVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
                ++   YA  GR D    + + M  K +
Sbjct: 642 DATHVLLSNMYATAGRWDNVAFVRKYMQKKKV 673



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 106/458 (23%), Positives = 187/458 (40%), Gaps = 82/458 (17%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL 88
           G V+ A  +F  +  K+ V++  M++ YA+N    ++ +LF QM        N  I+G L
Sbjct: 185 GNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGAL 244

Query: 89  HNDKVKEAREL--------FDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
            +    EA  +            +  DLF    ++  Y + GE+  A+ LF+ +P K D 
Sbjct: 245 KSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMP-KTDL 303

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMP--------------------------------- 167
             W+ M+A YA+     EA  L   M                                  
Sbjct: 304 IPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSC 363

Query: 168 ------SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA 221
                 + N+   N+++  Y K GE+  + K FE + +R+ V+WN ++ GYV+L D + A
Sbjct: 364 VLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERA 423

Query: 222 WKFFQKIPEQNV----VSWVTMLSGYARNGRM---LEARRL-FDQMPIRNVVAWNAMIAA 273
              F  + E ++    V++ ++L   A    +   L+   L    M  ++ V  N++I  
Sbjct: 424 MNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDM 483

Query: 274 YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMI 333
           Y + G+I +A   F +M +R+ VSW  MI GY       EA  L D M + +        
Sbjct: 484 YAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTF 543

Query: 334 SGYVQNKRMDEANQIFDKIGTHDVVCWN--VMIKGYAQCGRMDEAINLFRQMVNKDIVTW 391
            G +                     C N  ++ KG A    M +  +     +   I  +
Sbjct: 544 VGVLS-------------------ACSNAGLLYKGQAHFESMSKDYD-----IKPCIEHY 579

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
             M+    ++ + D+A+K+  E+  + + + W AL+  
Sbjct: 580 TCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGA 617



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 145/344 (42%), Gaps = 45/344 (13%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S VF  N  +    K G +E ++K+F ++  +N VT+N++I  Y + G    A  LF  M
Sbjct: 371 SNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHM 430

Query: 73  PQRNL----VSWNSMIAGYLHNDKVKEAREL----FDKMFRPDLFSWALMITCYTRKGEL 124
            + ++    V+++S++        ++   ++       M+  D      +I  Y + G +
Sbjct: 431 LEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRI 490

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSMLSG 180
             AR  FD + NK D   WNAM+ GY+  G   EA  L D M       N +++  +LS 
Sbjct: 491 NDARLTFDKM-NKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSA 549

Query: 181 YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
            +  G ++     FE+M +                 D D          +  +  +  M+
Sbjct: 550 CSNAGLLYKGQAHFESMSK-----------------DYD---------IKPCIEHYTCMV 583

Query: 241 SGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE---EAARLFIEMPERNPV 296
               R GR  EA +L  ++  + +V+ W A++ A V   +++     A+  +EM   +  
Sbjct: 584 WLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDA 643

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340
           +   + + Y    + D    +   M  K +  +  +   +V+N+
Sbjct: 644 THVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGL--SWVENQ 685


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 184/542 (33%), Positives = 302/542 (55%), Gaps = 48/542 (8%)

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ER 293
           T+LS YA+ G + +ARR+FD +  RN+V+W AMI A+V   Q  EA + +  M     + 
Sbjct: 136 TLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKP 195

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIF 349
           + V++ ++++ +     L   +++  ++    +  +    T+++  Y +   + +A  IF
Sbjct: 196 DKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIF 255

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI----VTWNTMIAG-------- 397
           DK+   +VV W ++I GYAQ G++D A+ L  +M   ++    +T+ +++ G        
Sbjct: 256 DKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALE 315

Query: 398 ---------------------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
                                      Y +   + +A K+F ++   R+ V+W A+++G+
Sbjct: 316 HGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDL-PHRDVVTWTAMVTGY 374

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
            Q  FH +A+ +F  M Q+G K D  T   AL++C+  A LQ G+ IH   + +GY  D+
Sbjct: 375 AQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDV 434

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME 550
           ++ ++L++MYAKCG + +A L+F      +V++W ++I G A +G   EA++ FE+M  +
Sbjct: 435 YLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQ 494

Query: 551 GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDE 610
           G+ PD VTF  VLSAC+HVGLV+ G K F  M   Y I+P+VEHY+C +DLL RAG L+E
Sbjct: 495 GIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEE 554

Query: 611 AFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAE 670
           A  ++  M  +P   +WG LL ACR+H +++ G  A E + +L+P     Y  LSN++A 
Sbjct: 555 AENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAA 614

Query: 671 AGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQ 730
           AGR+++ EKVR  ME     K+PG SWIEV  ++H F   D       EI   L  L  Q
Sbjct: 615 AGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELGKLTEQ 674

Query: 731 IR 732
           I+
Sbjct: 675 IK 676



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 137/519 (26%), Positives = 259/519 (49%), Gaps = 51/519 (9%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           Q N    N+++S YAK G + DAR++F+ +  RN+VSW +MI  ++  ++  EA + ++ 
Sbjct: 128 QPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYET 187

Query: 103 M----FRPDLFSWALMITCYT--------RKGELEKARELFDLLPNKEDTACWNAMVAGY 150
           M     +PD  ++  ++  +T        +K  +E A+   +L P         ++V  Y
Sbjct: 188 MKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPR-----VGTSLVGMY 242

Query: 151 AKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWN 206
           AK G+ ++A+ + D +P KN+V+W  +++GY + G++ +A +  E M++ +V    +++ 
Sbjct: 243 AKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYT 302

Query: 207 LMLDGYVELDDLDSAWKFFQKIPEQNVVS--WVT--MLSGYARNGRMLEARRLFDQMPIR 262
            +L G      L+   K  + I +       WV   +++ Y + G + EAR+LF  +P R
Sbjct: 303 SILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHR 362

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLL 318
           +VV W AM+  Y Q G  +EA  LF  M ++    + +++T+ +      A L E + + 
Sbjct: 363 DVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIH 422

Query: 319 DQMPYK----NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMD 374
            Q+ +     ++  Q+A++S Y +   MD+A  +F+++   +VV W  MI G AQ GR  
Sbjct: 423 QQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCR 482

Query: 375 EAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM----GKRRNTVSWNAL 426
           EA+  F QM    +  D VT+ ++++    +  +++  K F  M    G +     ++  
Sbjct: 483 EALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCF 542

Query: 427 ISGFLQNEFHLDALK--IFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
           +   L    HL+  +  I  +  Q G     S     LSAC   + ++ G +     +K 
Sbjct: 543 VD-LLGRAGHLEEAENVILTMPFQPGP----SVWGALLSACRIHSDVERGERAAENVLKL 597

Query: 485 GYVND-LFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
              +D  +V  +L  +YA  GR ++AE + +  +  DV+
Sbjct: 598 DPDDDGAYV--ALSNIYAAAGRYEDAEKVRQVMEKRDVV 634



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 111/431 (25%), Positives = 210/431 (48%), Gaps = 45/431 (10%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ----RNLVSWNS 82
           K G + +A  IF ++ +KN VT+  +I+ YA+ G+V+ A +L E+M Q     N +++ S
Sbjct: 244 KCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTS 303

Query: 83  MIAGYL------HNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN 136
           ++ G        H  KV   R +    +  +++    +IT Y + G L++AR+LF  LP+
Sbjct: 304 ILQGCTTPLALEHGKKVH--RYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPH 361

Query: 137 KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMH---- 188
           + D   W AMV GYA++G ++EA  L   M  + I    +++ S L+  +    +     
Sbjct: 362 R-DVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKS 420

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGR 248
           +  +   A    DV   + ++  Y +   +D A   F ++ E+NVV+W  M++G A++GR
Sbjct: 421 IHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGR 480

Query: 249 MLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WT 299
             EA   F+QM  + +    V + ++++A    G +EE  + F  M     +      ++
Sbjct: 481 CREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYS 540

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISG---YVQNKRMDEANQIFDKIGTH 355
             +D   R   L+EA  ++  MP++   +   A++S    +   +R + A +   K+   
Sbjct: 541 CFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPD 600

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIV-----TWNTMIAGYAQIRQMDD---- 406
           D   +  +   YA  GR ++A  + + M  +D+V     +W   + G   +  ++D    
Sbjct: 601 DDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSW-IEVDGKVHVFHVEDKSHP 659

Query: 407 -AVKIFEEMGK 416
            A +I+ E+GK
Sbjct: 660 EAKEIYAELGK 670



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 113/230 (49%), Gaps = 6/230 (2%)

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
           +AL I   M  +G +         L  CA L +L+ GR++H   +KSG   + ++ N+L+
Sbjct: 79  EALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLL 138

Query: 498 TMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
           +MYAKCG + +A  +F      +++SW ++I  +       EA K +E M + G  PD V
Sbjct: 139 SMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKV 198

Query: 558 TFIGVLSACSHVGLVDGGLKL-FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVK 616
           TF+ +L+A ++  L+  G K+  E       +EP V     ++ + ++ G + +A  +  
Sbjct: 199 TFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVG--TSLVGMYAKCGDISKAQVIFD 256

Query: 617 GMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL--SELEPQKTSCYALL 664
            +  K N   W  L+        + +    +EK+  +E+ P K +  ++L
Sbjct: 257 KLPEK-NVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSIL 305



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/369 (20%), Positives = 169/369 (45%), Gaps = 56/369 (15%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G  ++  N  IT   K G ++EA K+F  +  ++ VT+ +M++ YA+ G  ++A  LF +
Sbjct: 330 GREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRR 389

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           M Q+ +                           +PD  ++   +T  +    L++ + + 
Sbjct: 390 MQQQGI---------------------------KPDKMTFTSALTSCSSPAFLQEGKSIH 422

Query: 132 DLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
             L +     D    +A+V+ YAK G+ ++A+ + + M  +N+V+W +M++G  ++G   
Sbjct: 423 QQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCR 482

Query: 189 LASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKI-----PEQNVVSWVTM 239
            A ++FE M+++    D V++  +L     +  ++   K F+ +      +  V  +   
Sbjct: 483 EALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCF 542

Query: 240 LSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAY-----VQRGQIEEAARLFIEMPER 293
           +    R G + EA  +   MP +     W A+++A      V+RG  E AA   +++   
Sbjct: 543 VDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERG--ERAAENVLKLDPD 600

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAM----ISG-----YVQNKRMDE 344
           +  ++  + + Y    + ++A ++   M  +++  +       + G     +V++K   E
Sbjct: 601 DDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPE 660

Query: 345 ANQIFDKIG 353
           A +I+ ++G
Sbjct: 661 AKEIYAELG 669


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 181/512 (35%), Positives = 277/512 (54%), Gaps = 72/512 (14%)

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
           +  VV  N ++  Y++   +  A RLF EM ER+  SW  MI GY +  +L EAR+L DQ
Sbjct: 121 VPGVVISNRILDMYIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQ 180

Query: 321 MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH------------------------- 355
           M  ++  + TAM SGYV++ + +EA ++F  +  H                         
Sbjct: 181 MTERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHL 240

Query: 356 ---------------DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQ 400
                          D V W+ +   Y +CG + EA ++F + V++D+V+W  MI  Y +
Sbjct: 241 GKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFK 300

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
             + ++   +F ++           L SG   NEF                     T + 
Sbjct: 301 EGRREEGFALFSDL-----------LKSGIWPNEF---------------------TFSG 328

Query: 461 ALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVD 520
            L+ACA  AA +LG+Q+H    + G+    F  ++L+ MY KCG I+NA  +F      D
Sbjct: 329 VLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMPRPD 388

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE 580
           ++SW SLI+GYA NG   EA++ FE ++  G  PD +TF+GVLSAC+H GLVD GL+ F+
Sbjct: 389 LVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFD 448

Query: 581 CMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNI 640
            + E + +    +HYAC+IDLLSR+GRL EA +++  M I+P+  +W +LLG CR+H N+
Sbjct: 449 SIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRIHGNL 508

Query: 641 KLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEV 700
           KL + A E L E+EP+  + Y  L+N++A AG W  V +VR  M+  G  K+PG SWIE+
Sbjct: 509 KLAKRAAEALFEIEPENPATYTTLANIYATAGLWGGVAEVRKVMDARGVVKKPGLSWIEI 568

Query: 701 KNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           K ++H FL GD    ++ EI   L  L+ +++
Sbjct: 569 KREVHVFLVGDTSHAKSKEIHEFLGKLSKRMK 600



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 146/577 (25%), Positives = 237/577 (41%), Gaps = 103/577 (17%)

Query: 61  RVNDARKLFEQMPQRNLVSWNSMIAGYL-----HNDKVKEA--RELFDKMFRPDLFSWAL 113
           +V    KLF   P+R + S ++     L     HN   K     EL  ++ + + F  A+
Sbjct: 8   KVGKILKLFS--PRRAICSSSTTSQPQLSKPPIHNTFFKSGAKDELVKRLCKDNNFKEAI 65

Query: 114 MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS 173
            I C  ++  L +A ++ D + ++   A ++ ++    ++   +E  K+     +   V 
Sbjct: 66  DILCEQKR--LREAIQILDHV-DRPSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVP 122

Query: 174 W----NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP 229
                N +L  Y K   +  A + F+ M ERD+ SWN+M+ GY +   L  A K F ++ 
Sbjct: 123 GVVISNRILDMYIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMT 182

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQMP---------------------IRNV---- 264
           E++  SW  M SGY R+ +  EA  LF  M                      I+++    
Sbjct: 183 ERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGK 242

Query: 265 ---------------VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIA 309
                          V W+A+   Y + G I EA  +F +  +R+ VSWT MID Y +  
Sbjct: 243 EIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEG 302

Query: 310 KLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK--------IG-THDVVCW 360
           + +E   L   +    I       SG V N   D A +   K        IG        
Sbjct: 303 RREEGFALFSDLLKSGIWPNEFTFSG-VLNACADHAAEELGKQVHGYMTRIGFDPSSFAA 361

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
           + ++  Y +CG +  A  +F  M   D+V+W ++I+GYAQ  Q D+A++ FE        
Sbjct: 362 STLVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFE-------- 413

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ-IHH 479
                                   L+ + G + DH T    LSAC H   +  G +    
Sbjct: 414 ------------------------LLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDS 449

Query: 480 LAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGNA 537
           +  K G  +       LI + ++ GR+Q AE +  D  P+  D   W SL+ G  I+GN 
Sbjct: 450 IKEKHGLTHTADHYACLIDLLSRSGRLQEAEDII-DKMPIEPDKFLWASLLGGCRIHGNL 508

Query: 538 TEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574
             A K   E + E    +P T+  + +  +  GL  G
Sbjct: 509 KLA-KRAAEALFEIEPENPATYTTLANIYATAGLWGG 544



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/425 (23%), Positives = 197/425 (46%), Gaps = 48/425 (11%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKV 93
           A ++F +M++++  ++N MIS YAK GR+ +ARKLF+QM +R+  SW +M +GY+ +D+ 
Sbjct: 143 AKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQH 202

Query: 94  KEARELFDKM-----FRPDLFSWALMITCYTRKGELEKAREL--------FDLLPNKEDT 140
           +EA ELF  M     F+ + F+ +  +        L   +E+         DL     D 
Sbjct: 203 EEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDL-----DG 257

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER 200
             W+A+   Y K G+  EA+ + D    +++VSW +M+  Y K G        F  + + 
Sbjct: 258 VVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKS 317

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIP--------EQNVVSWVTMLSGYARNGRMLEA 252
            +        G +      +A +  +++         + +  +  T++  Y + G +  A
Sbjct: 318 GIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNA 377

Query: 253 RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRI 308
           RR+F+ MP  ++V+W ++I+ Y Q GQ +EA + F  +     + + +++  ++      
Sbjct: 378 RRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHA 437

Query: 309 AKLDEARRLLDQMPYKNIAAQTA-----MISGYVQNKRMDEANQIFDKIGTH-DVVCWNV 362
             +D+     D +  K+    TA     +I    ++ R+ EA  I DK+    D   W  
Sbjct: 438 GLVDKGLEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWAS 497

Query: 363 MIKGYAQCGRM---DEAINLFRQMVNKDIVTWNTMI---------AGYAQIRQMDDAVKI 410
           ++ G    G +     A     ++  ++  T+ T+           G A++R++ DA  +
Sbjct: 498 LLGGCRIHGNLKLAKRAAEALFEIEPENPATYTTLANIYATAGLWGGVAEVRKVMDARGV 557

Query: 411 FEEMG 415
            ++ G
Sbjct: 558 VKKPG 562


>gi|345505230|gb|AEN99839.1| chlororespiratory reduction 4 [Nasturtium officinale]
          Length = 614

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 196/553 (35%), Positives = 308/553 (55%), Gaps = 25/553 (4%)

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLS 241
           E H+ S  F   + +D   WNL++  +    D   A  +F  + E  +     S+  +L 
Sbjct: 73  EYHVCS--FAPGDVKDPFLWNLVIKSHSHGVDPRRALLWFCLMLENGISVDKFSFSLVLK 130

Query: 242 GYARNGRMLEARRLFDQMPIRNVVAW------NAMIAAYVQRGQIEEAARLFIEMPERNP 295
             +R G +    ++   +  R    W      N +I  Y++ G +  A ++F  MP+R+ 
Sbjct: 131 ACSRLGFLKGGMQIHGFL--RKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDS 188

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQMP--YKNIAAQTAMISGYVQNKR-MDEANQIFDKI 352
           VS+ +MIDGY++   ++ AR L D MP   KN+ +  +MISGY Q    ++ A+++F ++
Sbjct: 189 VSYNSMIDGYIKCGLIESARELFDLMPREMKNLISWNSMISGYAQTSDGVNIASKLFAEM 248

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFE 412
              D++ WN +I GY + GRM++A +LF  M  +D+VTW TMI GYA++  +  A  +F+
Sbjct: 249 PEKDLISWNSLIYGYVKHGRMEDAKDLFHVMPRRDVVTWATMIDGYAKLGFVHKAKTLFD 308

Query: 413 EMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK-KADHSTLACALSACAHLAAL 471
           +M   R+ V++N++++G++QN  H++AL+IF  M +E     D +TL   LSA A L  L
Sbjct: 309 QM-PHRDVVAYNSMMAGYVQNRHHMEALEIFSDMEKESHLTPDETTLVIVLSAIAQLGQL 367

Query: 472 QLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGY 531
                +H   ++  +     +G +LI MY+KCG IQ A  +F+  +   +  WN++I G 
Sbjct: 368 SKAMDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQQAMCVFEGIENKSIDHWNAMIGGL 427

Query: 532 AINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL 591
           AI+G    A  +  E+    + PD +TF+GVL+ACSH GLV  GL  FE M   + IEP 
Sbjct: 428 AIHGLGESAFNILLEIERRSIEPDYITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPR 487

Query: 592 VEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLS 651
           ++HY CM+DLLSR G ++ A  +++ M I+PN  IW T L AC  H+  ++G +  + L 
Sbjct: 488 LQHYGCMVDLLSRCGSIELAKNLIEEMPIEPNDVIWRTFLTACNHHKEFEIGELVAKHLI 547

Query: 652 ELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD 711
                  S Y LLSNM+A  GRW +V  VR  M+    QK PGCSWIE+  ++H F    
Sbjct: 548 LQAGYNPSSYVLLSNMYASFGRWKDVRNVRTMMKERKLQKVPGCSWIELDGRVHEFF--- 604

Query: 712 PKQCRTAEICNTL 724
                + E+ NTL
Sbjct: 605 ---VDSIEVSNTL 614



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 102/294 (34%), Positives = 163/294 (55%), Gaps = 13/294 (4%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F QN  I    K G +  A +IF +M Q+++V+YNSMI  Y K G +  AR+LF+ M
Sbjct: 155 SDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYIKCGLIESARELFDLM 214

Query: 73  PQ--RNLVSWNSMIAGYLH-NDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARE 129
           P+  +NL+SWNSMI+GY   +D V  A +LF +M   DL SW  +I  Y + G +E A++
Sbjct: 215 PREMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIYGYVKHGRMEDAKD 274

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           LF ++P + D   W  M+ GYAK+G  ++AK L D MP +++V++NSM++GY +N     
Sbjct: 275 LFHVMP-RRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNRHHME 333

Query: 190 ASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV----SWVTML 240
           A + F  ME+      D  +  ++L    +L  L  A      I E+         V ++
Sbjct: 334 ALEIFSDMEKESHLTPDETTLVIVLSAIAQLGQLSKAMDMHLYIVEKQFYLGGKLGVALI 393

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
             Y++ G + +A  +F+ +  +++  WNAMI      G  E A  + +E+  R+
Sbjct: 394 DMYSKCGSIQQAMCVFEGIENKSIDHWNAMIGGLAIHGLGESAFNILLEIERRS 447



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 124/464 (26%), Positives = 215/464 (46%), Gaps = 61/464 (13%)

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           +L   N +I  YL    +  AR++FD+M + D  S+  MI  Y + G +E ARELFDL+P
Sbjct: 156 DLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYIKCGLIESARELFDLMP 215

Query: 136 NK-EDTACWNAMVAGYAKIGN-YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
            + ++   WN+M++GYA+  +  N A KL   MP K+++SWNS++ GY K+G M  A   
Sbjct: 216 REMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIYGYVKHGRMEDAKDL 275

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEAR 253
           F  M  RDVV+W  M+DGY +L  +  A   F ++P ++VV++ +M++GY +N   +EA 
Sbjct: 276 FHVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNRHHMEAL 335

Query: 254 RLFDQMPIRNVVAWNA-----MIAAYVQRGQIEEAARLFIEMPERNPV----SWTTMIDG 304
            +F  M   + +  +      +++A  Q GQ+ +A  + + + E+           +ID 
Sbjct: 336 EIFSDMEKESHLTPDETTLVIVLSAIAQLGQLSKAMDMHLYIVEKQFYLGGKLGVALIDM 395

Query: 305 YVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH----DVVCW 360
           Y +   + +A  + + +  K+I    AMI G   +   + A  I  +I       D + +
Sbjct: 396 YSKCGSIQQAMCVFEGIENKSIDHWNAMIGGLAIHGLGESAFNILLEIERRSIEPDYITF 455

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVT-----WNTMIAGYAQIRQMDDAVKIFEEMG 415
             ++   +  G + E +  F  M  K  +      +  M+   ++   ++ A  + EEM 
Sbjct: 456 VGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDLLSRCGSIELAKNLIEEMP 515

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
              N V W                                      L+AC H    ++G 
Sbjct: 516 IEPNDVIWRTF-----------------------------------LTACNHHKEFEIGE 540

Query: 476 QI-HHLAIKSGYVNDLFVGNSLITMYAKCGR---IQNAELLFKD 515
            +  HL +++GY    +V   L  MYA  GR   ++N   + K+
Sbjct: 541 LVAKHLILQAGYNPSSYV--LLSNMYASFGRWKDVRNVRTMMKE 582



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 165/337 (48%), Gaps = 54/337 (16%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQ--KNTVTYNSMISAYAKNGR-VNDARKLFEQMPQR 75
           N  I    K G +E A ++F  M +  KN +++NSMIS YA+    VN A KLF +MP++
Sbjct: 192 NSMIDGYIKCGLIESARELFDLMPREMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEK 251

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           +L+SWNS+I GY+ + ++++A++LF  M R D+ +WA MI  Y + G + KA+ LFD +P
Sbjct: 252 DLISWNSLIYGYVKHGRMEDAKDLFHVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMP 311

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN------------------------- 170
           ++ D   +N+M+AGY +  ++ EA ++   M  ++                         
Sbjct: 312 HR-DVVAYNSMMAGYVQNRHHMEALEIFSDMEKESHLTPDETTLVIVLSAIAQLGQLSKA 370

Query: 171 ------IVSWNSMLSG---------YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
                 IV     L G         Y+K G +  A   FE +E + +  WN M+ G    
Sbjct: 371 MDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQQAMCVFEGIENKSIDHWNAMIGGLAIH 430

Query: 216 DDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA----- 266
              +SA+    +I     E + +++V +L+  + +G + E    F+ M  ++ +      
Sbjct: 431 GLGESAFNILLEIERRSIEPDYITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQH 490

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMI 302
           +  M+    + G IE A  L  EMP E N V W T +
Sbjct: 491 YGCMVDLLSRCGSIELAKNLIEEMPIEPNDVIWRTFL 527


>gi|356560286|ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 202/702 (28%), Positives = 356/702 (50%), Gaps = 76/702 (10%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFS 110
           ++I+ Y K   ++ A ++F++ P +    WN+++   L ++K ++A ELF +M       
Sbjct: 171 ALINLYEKYLGIDGANQVFDETPLQEDFLWNTIVMANLRSEKWEDALELFRRMQSA---- 226

Query: 111 WALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN 170
                +     G + K  +           AC         K+   NE K++   +    
Sbjct: 227 -----SAKATDGTIVKLLQ-----------AC--------GKLRALNEGKQIHGYVIRFG 262

Query: 171 IVS----WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
            VS     NS++S Y++N  + LA   F++ E+ +  SWN ++  Y   D L+ AW   Q
Sbjct: 263 RVSNTSICNSIVSMYSRNNRLELARVAFDSTEDHNSASWNSIISSYAVNDCLNGAWDLLQ 322

Query: 227 KIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
           ++    V                             +++ WN++++ ++ +G  E     
Sbjct: 323 EMESSGVKP---------------------------DIITWNSLLSGHLLQGSYENVLTN 355

Query: 287 FIEMP----ERNPVSWTTMIDGYVRIAKLDEARR-----LLDQMPYKNIAAQTAMISGYV 337
           F  +     + +  S T+ +   + +   +  +      +  ++ Y ++   T+++  Y+
Sbjct: 356 FRSLQSAGFKPDSCSITSALQAVIGLGCFNLGKEIHGYIMRSKLEY-DVYVCTSLVDKYI 414

Query: 338 QNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNT 393
           +N  +D+A  +F      ++  WN +I GY   G  D A  L  QM    +  D+VTWN+
Sbjct: 415 KNDCLDKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNS 474

Query: 394 MIAGYAQIRQMDDAVKIF---EEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
           +++GY+   + ++A+ +    + +G   N VSW A+ISG  QNE ++DAL+ F  M +E 
Sbjct: 475 LVSGYSMSGRSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYMDALQFFSQMQEEN 534

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
            K + +T+   L ACA  + L++G +IH  +++ G+++D+++  +LI MY K G+++ A 
Sbjct: 535 VKPNSTTICTLLRACAGSSLLKIGEEIHCFSMRHGFLDDIYIATALIDMYGKGGKLKVAH 594

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
            +F++     +  WN ++ GYAI G+  E   LF+EM   GV PD +TF  +LS C + G
Sbjct: 595 EVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDEMRKTGVRPDAITFTALLSGCKNSG 654

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
           LV  G K F+ M   Y I P +EHY+CM+DLL +AG LDEA + +  +  K +A IWG +
Sbjct: 655 LVMDGWKYFDSMKTDYNINPTIEHYSCMVDLLGKAGFLDEALDFIHAVPQKADASIWGAV 714

Query: 631 LGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQ 690
           L ACR+H++IK+  IA   L  LEP  ++ YAL+ N+++   RW +VE+++ SM   G +
Sbjct: 715 LAACRLHKDIKIAEIAARNLLRLEPYNSANYALMMNIYSTFDRWGDVERLKESMTALGVK 774

Query: 691 KQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
                SWI+VK  IH F +         EI   L  L ++I+
Sbjct: 775 IPNVWSWIQVKQTIHVFSTEGKSHPEEGEIYFELYQLISEIK 816



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 122/479 (25%), Positives = 220/479 (45%), Gaps = 38/479 (7%)

Query: 21  KITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSW 80
           K+  L +  ++   +  F ++S  NT   NS++S Y++N R+  AR  F+     N  SW
Sbjct: 244 KLRALNEGKQIHGYVIRFGRVS--NTSICNSIVSMYSRNNRLELARVAFDSTEDHNSASW 301

Query: 81  NSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPN 136
           NS+I+ Y  ND +  A +L  +M     +PD+ +W  +++ +  +G  E     F  L +
Sbjct: 302 NSIISSYAVNDCLNGAWDLLQEMESSGVKPDIITWNSLLSGHLLQGSYENVLTNFRSLQS 361

Query: 137 ---KEDTACWNAMVAGYAKIGNYNEAKKLLD-AMPSK---NIVSWNSMLSGYTKNGEMHL 189
              K D+    + +     +G +N  K++    M SK   ++    S++  Y KN  +  
Sbjct: 362 AGFKPDSCSITSALQAVIGLGCFNLGKEIHGYIMRSKLEYDVYVCTSLVDKYIKNDCLDK 421

Query: 190 ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYAR 245
           A   F   + +++ +WN ++ GY      D+A K   ++ E+ +    V+W +++SGY+ 
Sbjct: 422 AEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNSLVSGYSM 481

Query: 246 NGRMLEARRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTM 301
           +GR  EA  + +++       NVV+W AMI+   Q     +A + F +M E N    +T 
Sbjct: 482 SGRSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYMDALQFFSQMQEENVKPNSTT 541

Query: 302 IDGYVRIAKLDEARRLLDQMP--------YKNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
           I   +R        ++ +++           +I   TA+I  Y +  ++  A+++F  I 
Sbjct: 542 ICTLLRACAGSSLLKIGEEIHCFSMRHGFLDDIYIATALIDMYGKGGKLKVAHEVFRNIK 601

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVK 409
              + CWN M+ GYA  G  +E   LF +M    V  D +T+  +++G      + D  K
Sbjct: 602 EKTLPCWNCMMMGYAIYGHGEEVFTLFDEMRKTGVRPDAITFTALLSGCKNSGLVMDGWK 661

Query: 410 IFEEMGKRRN---TVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
            F+ M    N   T+   + +   L     LD    F+    +  KAD S     L+AC
Sbjct: 662 YFDSMKTDYNINPTIEHYSCMVDLLGKAGFLDEALDFIHAVPQ--KADASIWGAVLAAC 718



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 109/505 (21%), Positives = 196/505 (38%), Gaps = 121/505 (23%)

Query: 258 QMPI-RNVVAWN-AMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIA------ 309
           +MP  RN+V  + +M+  Y+Q G  E A ++F     RN + W + I+ +          
Sbjct: 56  KMPKKRNLVTMDGSMMRNYLQFGDFESATKVFFVGFARNYLLWNSFIEEFASFGGDSHEI 115

Query: 310 ------------KLDEARR----------------------LLDQMPYKNIAAQTAMISG 335
                       K D                          L+ +  + ++    A+I+ 
Sbjct: 116 LAVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHACLVKRGFHVDVHLSCALINL 175

Query: 336 YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN---------- 385
           Y +   +D ANQ+FD+    +   WN ++    +  + ++A+ LFR+M +          
Sbjct: 176 YEKYLGIDGANQVFDETPLQEDFLWNTIVMANLRSEKWEDALELFRRMQSASAKATDGTI 235

Query: 386 -----------------------------KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
                                         +    N++++ Y++  +++ A   F+   +
Sbjct: 236 VKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARVAFDST-E 294

Query: 417 RRNTVSWNALISGFLQNEF-----------------------------HL------DALK 441
             N+ SWN++IS +  N+                              HL      + L 
Sbjct: 295 DHNSASWNSIISSYAVNDCLNGAWDLLQEMESSGVKPDIITWNSLLSGHLLQGSYENVLT 354

Query: 442 IFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYA 501
            F  +   G K D  ++  AL A   L    LG++IH   ++S    D++V  SL+  Y 
Sbjct: 355 NFRSLQSAGFKPDSCSITSALQAVIGLGCFNLGKEIHGYIMRSKLEYDVYVCTSLVDKYI 414

Query: 502 KCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIG 561
           K   +  AE++F      ++ +WNSLI+GY   G    A KL  +M  EG+ PD VT+  
Sbjct: 415 KNDCLDKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNS 474

Query: 562 VLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMK-- 619
           ++S  S  G  +  L +   +  +  + P V  +  MI    +     +A +    M+  
Sbjct: 475 LVSGYSMSGRSEEALAVINRIKSL-GLTPNVVSWTAMISGCCQNENYMDALQFFSQMQEE 533

Query: 620 -IKPNAGIWGTLLGACRMHQNIKLG 643
            +KPN+    TLL AC     +K+G
Sbjct: 534 NVKPNSTTICTLLRACAGSSLLKIG 558


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 199/629 (31%), Positives = 327/629 (51%), Gaps = 70/629 (11%)

Query: 160 KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLD 219
           K  L A P+  +   N +L+ Y K+G +  A + F+ M + ++ + N +L        + 
Sbjct: 40  KTFLQAPPTFLL---NHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVP 96

Query: 220 SAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM-------PIRNVVAWNAMIA 272
              + F  +PE++ VS+  +++G++  G    + +L+  +       P R  ++   M+A
Sbjct: 97  DMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVA 156

Query: 273 A-----------YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           +           + Q  ++   A  F+  P         ++D Y ++  + +ARR+  +M
Sbjct: 157 SALSDRALGHSVHCQVLRLGFGAYAFVGSP---------LVDMYAKMGLIRDARRVFQEM 207

Query: 322 PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
             K +     +I+G ++ K +++A  +F  +   D + W  M+ G  Q G   EA+++FR
Sbjct: 208 EAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFR 267

Query: 382 QM----VNKDIVTWNTMIAG-----------------------------------YAQIR 402
           +M    V  D  T+ +++                                     Y++ R
Sbjct: 268 RMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCR 327

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
            +  A  +F  M   RN +SW A+I G+ QN    +A++ F  M  +G K D  TL   +
Sbjct: 328 SIRLAEAVFRRM-TCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVI 386

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
           S+CA+LA+L+ G Q H LA+ SG +  + V N+L+T+Y KCG I++A  LF +    D +
Sbjct: 387 SSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQV 446

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           SW +L+ GYA  G A E I LFE+M++ G+ PD VTFIGVLSACS  GLV+ G   F+ M
Sbjct: 447 SWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSM 506

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKL 642
            + + I P+ +HY CMIDL SR+GR  EA E +K M   P+A  W TLL +CR+  N+++
Sbjct: 507 QKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEI 566

Query: 643 GRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKN 702
           G+ A E L E +PQ  + Y LL +MHA  G+W EV  +R  M     +K+PGCSWI+ KN
Sbjct: 567 GKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKN 626

Query: 703 QIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           ++H F + D     ++ I   L+ L +++
Sbjct: 627 KVHIFSADDQSHPFSSRIYEKLEWLNSKM 655



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 143/607 (23%), Positives = 256/607 (42%), Gaps = 108/607 (17%)

Query: 26  GKSG-RVEEAIKIF---SQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           G++G RV  A+      + +    T   N +++AYAK+GR+  AR++F++MP  NL + N
Sbjct: 24  GRTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRN 83

Query: 82  SMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKED-- 139
           ++++   H+  V +   LF  M   D  S+  +IT ++  G   ++ +L+  L  +E   
Sbjct: 84  ALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVR 143

Query: 140 ----TACWNAMVAGYAK---IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
               T     MVA       +G+    + L     +   V  + ++  Y K G +  A +
Sbjct: 144 PTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVG-SPLVDMYAKMGLIRDARR 202

Query: 193 FFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA 252
            F+ ME + VV +N ++ G +    ++ A   FQ + +++ ++W TM++G  +NG  LEA
Sbjct: 203 VFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEA 262

Query: 253 RRLFDQMPIR---------------------------------------NVVAWNAMIAA 273
             +F +M                                          NV   +A++  
Sbjct: 263 LDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDM 322

Query: 274 YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT--- 330
           Y +   I  A  +F  M  RN +SWT MI GY + A  +EA R   +M    I       
Sbjct: 323 YSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTL 382

Query: 331 -AMISGYVQNKRMDEANQIFDKIG-----THDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
            ++IS       ++E  Q F  +         +   N ++  Y +CG +++A  LF +M 
Sbjct: 383 GSVISSCANLASLEEGAQ-FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMS 441

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
             D V+W  ++ GYAQ  +  + + +FE+M           L++G               
Sbjct: 442 FHDQVSWTALVTGYAQFGKAKETIDLFEKM-----------LVNGL-------------- 476

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLG------RQIHHLAIKSGYVNDLFVGNSLIT 498
                  K D  T    LSAC+    ++ G       Q  H  +    ++D +    +I 
Sbjct: 477 -------KPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVP---IDDHY--TCMID 524

Query: 499 MYAKCGRIQNAELLFKD-ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
           +Y++ GR + AE   K      D   W +L++   + GN  E  K   E ++E    +P 
Sbjct: 525 LYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGN-MEIGKWAAENLLETDPQNPA 583

Query: 558 TFIGVLS 564
           +++ + S
Sbjct: 584 SYVLLCS 590



 Score =  150 bits (378), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 111/466 (23%), Positives = 210/466 (45%), Gaps = 59/466 (12%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            F  N  +T   KSGR+  A ++F +M   N  T N+++SA A +  V D  +LF  MP+
Sbjct: 48  TFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPE 107

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMF-----RPDLFSWALMITCYTRKGELEKARE 129
           R+ VS+N++I G+        + +L+  +      RP   + + MI   +   +      
Sbjct: 108 RDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHS 167

Query: 130 LFDLLPNKEDTA---CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           +   +      A     + +V  YAK+G   +A+++   M +K +V +N++++G  +   
Sbjct: 168 VHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKM 227

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGY----VELDDLD------------SAWKFFQKIP- 229
           +  A   F+ M +RD ++W  M+ G     ++L+ LD              + F   +  
Sbjct: 228 IEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTA 287

Query: 230 ----------------------EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
                                 E NV     ++  Y++   +  A  +F +M  RN+++W
Sbjct: 288 CGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISW 347

Query: 268 NAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRL----LD 319
            AMI  Y Q    EEA R F EM     + +  +  ++I     +A L+E  +     L 
Sbjct: 348 TAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALV 407

Query: 320 QMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
               + I    A+++ Y +   +++A+++FD++  HD V W  ++ GYAQ G+  E I+L
Sbjct: 408 SGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDL 467

Query: 380 FRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
           F +M    +  D VT+  +++  ++   ++     F+ M K  + V
Sbjct: 468 FEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIV 513



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/406 (23%), Positives = 180/406 (44%), Gaps = 48/406 (11%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G+Y F  +  +    K G + +A ++F +M  K  V YN++I+   +   + DA+ LF+ 
Sbjct: 178 GAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQL 237

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKA 127
           M  R+ ++W +M+ G   N    EA ++F +M       D +++  ++T        E+ 
Sbjct: 238 MVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEG 297

Query: 128 RELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
           +++   +     +++    +A+V  Y+K  +   A+ +   M  +NI+SW +M+ GY +N
Sbjct: 298 KQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQN 357

Query: 185 GEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT-- 238
                A + F  M+    + D  +   ++     L  L+   +F        ++ ++T  
Sbjct: 358 ACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVS 417

Query: 239 --MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
             +++ Y + G + +A RLFD+M   + V+W A++  Y Q G+ +E   LF +M      
Sbjct: 418 NALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNG-- 475

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI-GTH 355
                 DG   I  L    R                 +G V+     +    FD +   H
Sbjct: 476 ---LKPDGVTFIGVLSACSR-----------------AGLVE-----KGCDYFDSMQKDH 510

Query: 356 DVVC----WNVMIKGYAQCGRMDEAINLFRQMVNK-DIVTWNTMIA 396
           D+V     +  MI  Y++ GR  EA    +QM +  D   W T+++
Sbjct: 511 DIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLS 556


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 207/688 (30%), Positives = 338/688 (49%), Gaps = 89/688 (12%)

Query: 123 ELEKARELFDLLPNKEDTACWNA----------------MVAGYAKIGNYNEAKKLLDAM 166
           E++    LF    N +   C +A                +V  Y  +GN   A+   D +
Sbjct: 53  EIDDVHTLFRYCTNLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHI 112

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELD--DLDSAWKF 224
            ++++ +WN M+SGY + G      + F             ML   ++ D     S  K 
Sbjct: 113 HNRDVYAWNLMISGYGRAGYSSEVIRCFSL----------FMLSSGLQPDYRTFPSVLKA 162

Query: 225 FQKIPEQNVVSWVTMLSG--------------YARNGRMLEARRLFDQMPIRNVVAWNAM 270
            + + + N +  + +  G              Y R G ++ AR LFD+MP R++ +WNAM
Sbjct: 163 CRNVTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAM 222

Query: 271 IAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNI 326
           I+ Y Q G  +EA  L   +   + V+  +++         +    +    +       +
Sbjct: 223 ISGYCQSGNAKEALTLSDGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESEL 282

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM--- 383
                +I  Y +   + +  ++FD++   D++ WN +IK Y    +   AI LF++M   
Sbjct: 283 FVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLS 342

Query: 384 -------------------------------------VNKDIVTWNTMIAGYAQIRQMDD 406
                                                  +DI   N ++  YA++  +D 
Sbjct: 343 RIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDS 402

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK--ADHSTLACALSA 464
           A  +F  +   ++ +SWN +ISG+ QN F  +A++++ +M +EG +  A+  T    L A
Sbjct: 403 ARAVFNWL-PNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPA 461

Query: 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
           C+   AL+ G ++H   +K+G   D+FVG SL  MY KCGR+ +A  LF     V+ + W
Sbjct: 462 CSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPW 521

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           N+LIA +  +G+  +A+ LF+EM+ EGV PD +TF+ +LSACSH GLVD G   FE M  
Sbjct: 522 NTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQT 581

Query: 585 VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
            Y I P ++HY CM+DL  RAG+L+ A   +K M ++P+A IWG LL ACR+H N+ LG+
Sbjct: 582 DYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGK 641

Query: 645 IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQI 704
           IA E L E+EP+    + LLSNM+A AG+W+ V+++R    G G +K PG S +EV N++
Sbjct: 642 IASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKV 701

Query: 705 HTFLSGDPKQCRTAEICNTLKTLAAQIR 732
             F +G+       E+   L  L  +++
Sbjct: 702 EVFYTGNQTHPMYEEMYRELTALHEKLK 729



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 172/371 (46%), Gaps = 51/371 (13%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           N +I  YA+ G + D +K+F++M  R+L+SWNS+I  Y  N++   A  LF +M     +
Sbjct: 286 NKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQ 345

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNK----EDTACWNAMVAGYAKIGNYNEAKK 161
           PD  +   + +  ++ GE+   R +      K    ED    NA+V  YAK+G  + A+ 
Sbjct: 346 PDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARA 405

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER------DVVSWNLMLDGYVEL 215
           + + +P+K+++SWN+++SGY +NG    A + +  MEE       +  +W  +L    + 
Sbjct: 406 VFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQA 465

Query: 216 DDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
             L    K   ++ +     +V    ++   Y + GR+ +A  LF Q+P  N V WN +I
Sbjct: 466 GALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLI 525

Query: 272 AAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
           A +   G  E+A  LF EM                    LDE  +  D + +        
Sbjct: 526 ACHGFHGHGEKAVMLFKEM--------------------LDEGVK-PDHITF------VT 558

Query: 332 MISGYVQNKRMDEANQIFDKIGTHDVVC-----WNVMIKGYAQCGRMDEAINLFRQM-VN 385
           ++S    +  +DE    F+ + T   +      +  M+  Y + G+++ A+N  + M + 
Sbjct: 559 LLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQ 618

Query: 386 KDIVTWNTMIA 396
            D   W  +++
Sbjct: 619 PDASIWGALLS 629



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/417 (24%), Positives = 183/417 (43%), Gaps = 80/417 (19%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFS 110
           S+I  Y + G V +AR LF++MP R++ SWN+MI+GY  +   KEA  L D +   D  +
Sbjct: 190 SLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAMDSVT 249

Query: 111 WALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMP 167
              +++  T  G+  +   +         + +    N ++  YA+ G+  + +K+ D M 
Sbjct: 250 VVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMY 309

Query: 168 SKNIVSWNSMLSGYTKNGE-----------------------MHLASKFFEAMEER---- 200
            ++++SWNS++  Y  N +                       + LAS   +  E R    
Sbjct: 310 VRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRS 369

Query: 201 -------------DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
                        D+   N ++  Y +L  +DSA   F  +P ++V+SW T++SGYA+NG
Sbjct: 370 VQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNG 429

Query: 248 RMLEARRLFDQMPIR------NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTM 301
              EA  +++ M         N   W +++ A  Q G + +  +L               
Sbjct: 430 FASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLH-------------- 475

Query: 302 IDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWN 361
                         RLL    Y ++   T++   Y +  R+D+A  +F +I   + V WN
Sbjct: 476 -------------GRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWN 522

Query: 362 VMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            +I  +   G  ++A+ LF++M    V  D +T+ T+++  +    +D+    FE M
Sbjct: 523 TLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMM 579



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 74/355 (20%), Positives = 160/355 (45%), Gaps = 34/355 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR--- 75
           N  +    K G V+ A  +F+ +  K+ +++N++IS YA+NG  ++A +++  M +    
Sbjct: 388 NAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGE 447

Query: 76  ---NLVSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKAR 128
              N  +W S++        +++  +L  ++ +     D+F    +   Y + G L+ A 
Sbjct: 448 ISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDAL 507

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEA----KKLLDAMPSKNIVSWNSMLSGYTKN 184
            LF  +P + ++  WN ++A +   G+  +A    K++LD     + +++ ++LS  + +
Sbjct: 508 SLFYQIP-RVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHS 566

Query: 185 GEMHLASKFFEAMEERDVVS-----WNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-WVT 238
           G +      FE M+    ++     +  M+D Y     L+ A  F + +P Q   S W  
Sbjct: 567 GLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGA 626

Query: 239 MLSGYARNGRM----LEARRLFDQMPIRNVVAWNAMIA-AYVQRGQ---IEEAARLFIEM 290
           +LS    +G +    + +  LF+  P    V ++ +++  Y   G+   ++E   +    
Sbjct: 627 LLSACRVHGNVDLGKIASEHLFEVEPEH--VGYHVLLSNMYASAGKWEGVDEIRSITSGK 684

Query: 291 PERNPVSWTTM-IDGYVRIAKLDEARRLLDQMPYKNIAA--QTAMISGYVQNKRM 342
             R    W++M +D  V +         + +  Y+ + A  +   + GYV + R 
Sbjct: 685 GLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALHEKLKMVGYVPDHRF 739


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 199/567 (35%), Positives = 306/567 (53%), Gaps = 22/567 (3%)

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI------PEQNVVSWVT 238
           G +  A K F  +++  +  +N+M+  Y +   L      FQ++      P+     +V 
Sbjct: 145 GNLRYAEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVL 204

Query: 239 MLSGYARNGRMLEARRLF---DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
              G  R+ R  E  R F     M + N V +N++I  Y +   +E A +LF EM  R+ 
Sbjct: 205 KAIGCLRDVRQGEKVRGFIVKTGMDLDNYV-YNSLIDMYYELSNVENAKKLFDEMTTRDS 263

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQM-------PYKNIAAQTAMISGYVQNKRM-DEANQ 347
           VSW  MI GYVR  + ++A     +M       P +     T      ++N  + DE + 
Sbjct: 264 VSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHN 323

Query: 348 IFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDA 407
              K         N ++  YA+CG ++ A N+F +M  K+++ W +MI+GY     + +A
Sbjct: 324 YVRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREA 383

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
             +F++    R+ V W A+I+G++Q     DA+ +F  M  +  K D  T+   L+ CA 
Sbjct: 384 RDLFDK-SPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQ 442

Query: 468 LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSL 527
           L AL+ G+ IH    ++    D+ VG +LI MY+KCG +  +  +F + +  D  SW S+
Sbjct: 443 LGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSI 502

Query: 528 IAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYA 587
           I G A+NG  +EA++LF EM   G  PD +TFIGVLSACSH GLV+ G + F  M +V+ 
Sbjct: 503 ICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHR 562

Query: 588 IEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPN---AGIWGTLLGACRMHQNIKLGR 644
           IEP VEHY C+IDLL RAG LDEA E+++ + I+       ++G LL ACR+H N+ +G 
Sbjct: 563 IEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGE 622

Query: 645 IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQI 704
              +KL  +E   +S + LL+N++A   RW++ +KVR  M+  G +K PGCS IEV   +
Sbjct: 623 RLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIV 682

Query: 705 HTFLSGDPKQCRTAEICNTLKTLAAQI 731
           H FL GDP      EIC+ L  +  Q+
Sbjct: 683 HEFLVGDPSHPEMIEICSMLNRVTGQL 709



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 140/579 (24%), Positives = 236/579 (40%), Gaps = 155/579 (26%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL 88
           G +  A KIF+ +   +   YN M+  YAK G +     LF+Q+ +  L  W        
Sbjct: 145 GNLRYAEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQLREDGL--W-------- 194

Query: 89  HNDKVKEARELFDKMFRPDLFSWALM---ITCYTRKGELEKARELFDLLPNKEDTACWNA 145
                            PD F++  +   I C     + EK R          D   +N+
Sbjct: 195 -----------------PDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNS 237

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM-------- 197
           ++  Y ++ N   AKKL D M +++ VSWN M+SGY +      A   F  M        
Sbjct: 238 LIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKP 297

Query: 198 EERDVVSW-------------------------------NLMLDGYVELDDLDSAWKFFQ 226
           +E  VVS                                N +LD Y +   L+ A   F 
Sbjct: 298 DEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCLNIARNIFD 357

Query: 227 KIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
           ++  +NV+ W +M+SGY   G + EAR LFD+ P+R+VV W AMI  YVQ    ++A  L
Sbjct: 358 EMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVAL 417

Query: 287 FIEM------PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340
           F EM      P++  V   T++ G  ++  L++ +                 I GY+   
Sbjct: 418 FREMQIQKIKPDKFTV--VTLLTGCAQLGALEQGK----------------WIHGYLDEN 459

Query: 341 RMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQ 400
           R+           T DVV    +I+ Y++CG +D+++ +F ++ +KD  +W ++I G A 
Sbjct: 460 RI-----------TMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAM 508

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
             +  +A+++F EM +                                 G K D  T   
Sbjct: 509 NGKTSEALRLFSEMERV--------------------------------GAKPDDITFIG 536

Query: 461 ALSACAHLAALQLGR-------QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
            LSAC+H   ++ GR       ++H +  K  +         +I +  + G +  AE L 
Sbjct: 537 VLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHY------GCVIDLLGRAGLLDEAEELI 590

Query: 514 KDADPVD-----VISWNSLIAGYAINGNATEAIKLFEEM 547
           ++  P++     V  + +L++   I+ N     +L +++
Sbjct: 591 QEI-PIENCEIVVPLYGALLSACRIHNNVDMGERLAKKL 628



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 106/434 (24%), Positives = 194/434 (44%), Gaps = 66/434 (15%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           +YV+N    I    +   VE A K+F +M+ +++V++N MIS Y +  R  DA   F +M
Sbjct: 232 NYVYNS--LIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREM 289

Query: 73  PQR--------NLVSW--------NSMIAGYLHNDKVKE--------------------- 95
            Q          +VS         N  +   +HN   KE                     
Sbjct: 290 QQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCL 349

Query: 96  --ARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKI 153
             AR +FD+M   ++  W  MI+ Y   G+L +AR+LFD  P + D   W AM+ GY + 
Sbjct: 350 NIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVR-DVVLWTAMINGYVQF 408

Query: 154 GNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSW 205
            ++++A  L   M  + I     +  ++L+G  + G +         ++E     DVV  
Sbjct: 409 HHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVG 468

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM----PI 261
             +++ Y +   +D + + F ++ +++  SW +++ G A NG+  EA RLF +M      
Sbjct: 469 TALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAK 528

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVRIAKLDEARR 316
            + + +  +++A    G +EE  R F  M + + +      +  +ID   R   LDEA  
Sbjct: 529 PDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEE 588

Query: 317 LLDQMPYKN----IAAQTAMISGYVQNKRMDEANQI---FDKIGTHDVVCWNVMIKGYAQ 369
           L+ ++P +N    +    A++S    +  +D   ++    + I + D     ++   YA 
Sbjct: 589 LIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYAS 648

Query: 370 CGRMDEAINLFRQM 383
             R ++A  + R+M
Sbjct: 649 VDRWEDAKKVRRKM 662


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 202/692 (29%), Positives = 354/692 (51%), Gaps = 74/692 (10%)

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           F P+       +  +  +G+L  A ++FD +P K +T   N M++G+ K G  ++A++L 
Sbjct: 39  FNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAK-NTISLNMMISGHLKFGKLSKARELF 97

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLD 219
           D M  +  VSW  ++ GY ++ +   A + +  M     E D V+   +L G+ EL+  +
Sbjct: 98  DGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKN 157

Query: 220 SAWKFFQKI----PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
              +    +     E N++   +++  Y +   +  A +LF  M  ++ V +N+++  Y 
Sbjct: 158 VIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYS 217

Query: 276 QRGQIEEAARLFIEMPER--NPVSWTTMIDGYVRIAKLDEARRLLDQMPYK--------- 324
             G  EEA  LF+E+      P  +T         A L  A   LD   +          
Sbjct: 218 NEGLNEEAIELFLELHNSGIKPSDFT--------FAALLSAAVGLDDTKFGQQVHGFVLK 269

Query: 325 -----NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
                N+    A++  Y ++ ++DE  ++F ++   D + +NV+I  YA  G+  E+ +L
Sbjct: 270 TNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDL 329

Query: 380 FRQM---------------------------------------VNKDIVTWNTMIAGYAQ 400
           FR++                                        N +    N ++  YA+
Sbjct: 330 FRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAK 389

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
                +A KIF+ +  + +TV W A+IS ++Q   H + + +F  M + G  AD +T A 
Sbjct: 390 CNGDKEAQKIFDNIACK-STVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFAS 448

Query: 461 ALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVD 520
            L ACA+LA++ LGRQ+H L I+SG++++++ G++L+  YAKCG + +A   F +    +
Sbjct: 449 ILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERN 508

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE 580
            +SWN+LI+ YA NGN    +  F++M+  G  PD V+F+ VLSACSH G V+  L  F 
Sbjct: 509 SVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFN 568

Query: 581 CMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNI 640
            MT++Y + P  EHY  M+D+L R GR DEA +++  M  +P+  +W ++L +CR+H+N 
Sbjct: 569 SMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNH 628

Query: 641 KLGRIAVEKLSELEPQKTSC-YALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
           +L + A ++L  +E  + +  Y  +SN++A AG+WD V KV+ +M   G +K P  SW+E
Sbjct: 629 ELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVE 688

Query: 700 VKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           +K+Q H F + D       +I   +  L+ ++
Sbjct: 689 IKHQTHVFSANDKSHPEMKKILRKINALSKEM 720



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 176/675 (26%), Positives = 294/675 (43%), Gaps = 121/675 (17%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N ++    + G +  A ++F QM  KNT++ N MIS + K G+++ AR+LF+ M +R  V
Sbjct: 47  NFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAV 106

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDL- 133
           SW  +I GYL +++ KEA  L+  M R    PD   +  ++T  +  GELE    +  + 
Sbjct: 107 SWTILIGGYLQSNQSKEAFRLYADMRRGGIEPD---YVTLVTLLSGFGELETKNVIVQIH 163

Query: 134 -----LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
                L  + +    N++V  Y K      A +L   M +K+ V++NS+++GY+  G   
Sbjct: 164 THVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNE 223

Query: 189 LASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV----TML 240
            A + F  +    +     ++  +L   V LDD     +    + + N V  V     +L
Sbjct: 224 EAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALL 283

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPV 296
             Y+++ ++ E  +LF +MP  + +++N +I +Y   GQ +E+  LF ++     +R   
Sbjct: 284 DYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQF 343

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIA--------AQTAMISGYVQNKRMDEANQI 348
            + T++     IA      R+  Q+  + I          + A++  Y +     EA +I
Sbjct: 344 PFATLLS----IATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKI 399

Query: 349 FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAG------- 397
           FD I     V W  MI  Y Q G+ +E IN+F  M    V  D  T+ +++         
Sbjct: 400 FDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASI 459

Query: 398 ----------------------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
                                       YA+   M DA+K F EM + RN+VSWNALIS 
Sbjct: 460 SLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPE-RNSVSWNALISA 518

Query: 430 FLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND 489
           + QN      L  F  M Q G K D  +    LSAC+H                 G+V +
Sbjct: 519 YAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSH----------------CGFVEE 562

Query: 490 -LFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
            L+  NS+  +Y    + ++               + S++     NG   EA KL  EM 
Sbjct: 563 ALWHFNSMTQIYEVTPKREH---------------YTSMVDVLCRNGRFDEAEKLMTEMP 607

Query: 549 MEGVAPDPVTFIGVLSAC----SHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSR 604
            E   P  + +  VL++C    +H        +LF  M ++    P    Y  M ++ + 
Sbjct: 608 FE---PSEIMWSSVLNSCRIHKNHELAKKAADRLFN-MEDLRDAAP----YINMSNIYAV 659

Query: 605 AGRLDEAFEMVKGMK 619
           AG+ D   ++ K M+
Sbjct: 660 AGQWDNVAKVKKAMR 674



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 139/300 (46%), Gaps = 27/300 (9%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           +N  +    K    +EA KIF  ++ K+TV + +MISAY + G+  +   +F  M +  +
Sbjct: 380 ENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGV 439

Query: 78  VSWNSMIAGYLHN----DKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARE 129
            +  +  A  L        +   R+L   + R     +++S + ++  Y + G +  A +
Sbjct: 440 PADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIK 499

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGN----YNEAKKLLDAMPSKNIVSWNSMLS-----G 180
            F  +P + ++  WNA+++ YA+ GN     N  ++++ +    + VS+ S+LS     G
Sbjct: 500 SFGEMPER-NSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCG 558

Query: 181 YTKNGEMHLAS--KFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSWV 237
           + +    H  S  + +E   +R+   +  M+D        D A K   ++P E + + W 
Sbjct: 559 FVEEALWHFNSMTQIYEVTPKRE--HYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWS 616

Query: 238 TMLSG--YARNGRMLE--ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           ++L+     +N  + +  A RLF+   +R+   +  M   Y   GQ +  A++   M +R
Sbjct: 617 SVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDR 676



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 102/203 (50%), Gaps = 13/203 (6%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V++ +  +    K G + +AIK F +M ++N+V++N++ISAYA+NG V+     F+QM
Sbjct: 476 SNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQM 535

Query: 73  PQR----NLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGE 123
            Q     + VS+ S+++   H   V+EA   F+ M +     P    +  M+    R G 
Sbjct: 536 IQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGR 595

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS----KNIVSWNSMLS 179
            ++A +L   +P +     W++++       N+  AKK  D + +    ++   + +M +
Sbjct: 596 FDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSN 655

Query: 180 GYTKNGEMHLASKFFEAMEERDV 202
            Y   G+    +K  +AM +R V
Sbjct: 656 IYAVAGQWDNVAKVKKAMRDRGV 678


>gi|297843734|ref|XP_002889748.1| hypothetical protein ARALYDRAFT_471032 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335590|gb|EFH66007.1| hypothetical protein ARALYDRAFT_471032 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 595

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 190/536 (35%), Positives = 296/536 (55%), Gaps = 49/536 (9%)

Query: 218 LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR 277
           +  A K F     ++V SW +M++ Y+ +    +A+ LFD+MP RN+++WN +++ Y++ 
Sbjct: 31  IHEARKLFDSCDSKSVSSWNSMVAVYSASCMPRDAQLLFDEMPERNIISWNGLLSGYMKN 90

Query: 278 GQIEEAARLFIEMPERNPVSWTTMIDGYVRIA-KLDEARRLLDQMPYKNIAAQTAMISGY 336
           G+I+EA  +F  M ERN VSWTT++D    +  K+ E  ++ + M   +  A+T+MI G 
Sbjct: 91  GEIDEAREVFDLMLERNVVSWTTLVDVAESLFWKMPEKNKMGESMMRVSYIARTSMIHGL 150

Query: 337 VQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIA 396
            +  R+DEA +IFD++    V+ W  M+ GY +  R+D+A  LF  M  K  V+W +M+ 
Sbjct: 151 CKEGRVDEAREIFDEMSERSVITWTTMVTGYGRNNRVDDARKLFDVMPEKTEVSWTSMLM 210

Query: 397 GYAQIRQMDDAVKIFE------------EMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
            Y Q  +++DA ++FE            +  K RN  +W  +I    +N F L+AL +FV
Sbjct: 211 SYVQNGRIEDAEELFEAKRRDSKSKEGFDSMKERNDATWQMVIKFHERNGFELEALDLFV 270

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG 504
           LM ++G +    TL   LS CA LA+L  G+Q+H   ++  +  DL+V + L+TMY KCG
Sbjct: 271 LMQKQGVRPTFPTLISVLSVCASLASLHHGKQVHAQLVRCQFDVDLYVASVLMTMYIKCG 330

Query: 505 RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG-VAPDPVTFIGVL 563
            +  ++L+F      D+I WNS+I+GYA +    EA+K+F EM + G   P+ VTF+  L
Sbjct: 331 ELLKSKLIFDRFPSKDIIMWNSIISGYASHSLGEEALKIFYEMPLSGSTEPNEVTFVATL 390

Query: 564 SACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPN 623
           SACS+ G+V+ GLK+FE M  V                L RAGR +EA EM+  M ++P+
Sbjct: 391 SACSYAGMVEEGLKIFESMESV----------------LGRAGRFNEAMEMIDSMIVEPD 434

Query: 624 AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVS 683
           A +WG+LLGACR H  + L     +KL E+E + +        MH + G    V      
Sbjct: 435 AAVWGSLLGACRTHSQLDLAEFCAKKLIEIETENSGSPTF---MHLKVGGLMLV------ 485

Query: 684 MEGSGAQKQPGCSWIEVKNQIHTFLSG----DPKQCRTAEICNTLKTLAAQIRNTP 735
                 +K PGCSW EVK ++H F  G     P+Q    ++ + L  L  +    P
Sbjct: 486 ------RKSPGCSWNEVKFKVHAFTHGGICSHPEQESILKLLDELDGLLREAGYNP 535



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 206/394 (52%), Gaps = 28/394 (7%)

Query: 48  TYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPD 107
           T N+ I+  ++ G++++ARKLF+    +++ SWNSM+A Y  +   ++A+ LFD+M   +
Sbjct: 17  TANAQITHLSRIGQIHEARKLFDSCDSKSVSSWNSMVAVYSASCMPRDAQLLFDEMPERN 76

Query: 108 LFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMV-AGYAKIGNYNEAKKLLDAM 166
           + SW  +++ Y + GE+++ARE+FDL+  + +   W  +V    +      E  K+ ++M
Sbjct: 77  IISWNGLLSGYMKNGEIDEAREVFDLMLER-NVVSWTTLVDVAESLFWKMPEKNKMGESM 135

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
              + ++  SM+ G  K G +  A + F+ M ER V++W  M+ GY   + +D A K F 
Sbjct: 136 MRVSYIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGRNNRVDDARKLFD 195

Query: 227 KIPEQNVVSWVTMLSGYARNGRMLEARRL-------------FDQMPIRNVVAWNAMIAA 273
            +PE+  VSW +ML  Y +NGR+ +A  L             FD M  RN   W  +I  
Sbjct: 196 VMPEKTEVSWTSMLMSYVQNGRIEDAEELFEAKRRDSKSKEGFDSMKERNDATWQMVIKF 255

Query: 274 YVQRGQIEEAARLFIEMPERN--PVSWT--TMIDGYVRIAKLDEARRLLDQMPY----KN 325
           + + G   EA  LF+ M ++   P   T  +++     +A L   +++  Q+       +
Sbjct: 256 HERNGFELEALDLFVLMQKQGVRPTFPTLISVLSVCASLASLHHGKQVHAQLVRCQFDVD 315

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-- 383
           +   + +++ Y++   + ++  IFD+  + D++ WN +I GYA     +EA+ +F +M  
Sbjct: 316 LYVASVLMTMYIKCGELLKSKLIFDRFPSKDIIMWNSIISGYASHSLGEEALKIFYEMPL 375

Query: 384 ---VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
                 + VT+   ++  +    +++ +KIFE M
Sbjct: 376 SGSTEPNEVTFVATLSACSYAGMVEEGLKIFESM 409



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 119/453 (26%), Positives = 217/453 (47%), Gaps = 81/453 (17%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N +IT L + G++ EA K+F     K+  ++NSM++ Y+ +    DA+ LF++MP+RN++
Sbjct: 19  NAQITHLSRIGQIHEARKLFDSCDSKSVSSWNSMVAVYSASCMPRDAQLLFDEMPERNII 78

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWAL------------------------- 113
           SWN +++GY+ N ++ EARE+FD M   ++ SW                           
Sbjct: 79  SWNGLLSGYMKNGEIDEAREVFDLMLERNVVSWTTLVDVAESLFWKMPEKNKMGESMMRV 138

Query: 114 -------MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
                  MI    ++G +++ARE+FD +  +     W  MV GY +    ++A+KL D M
Sbjct: 139 SYIARTSMIHGLCKEGRVDEAREIFDEMSER-SVITWTTMVTGYGRNNRVDDARKLFDVM 197

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEA-------------MEERDVVSWNLMLDGY- 212
           P K  VSW SML  Y +NG +  A + FEA             M+ER+  +W +++  + 
Sbjct: 198 PEKTEVSWTSMLMSYVQNGRIEDAEELFEAKRRDSKSKEGFDSMKERNDATWQMVIKFHE 257

Query: 213 ---VELDDLDSAWKFFQKIPEQNV-------VSWVTMLSGYA--RNGRMLEARRLFDQMP 260
               EL+ LD     F  + +Q V       +S +++ +  A   +G+ + A+ +  Q  
Sbjct: 258 RNGFELEALD----LFVLMQKQGVRPTFPTLISVLSVCASLASLHHGKQVHAQLVRCQFD 313

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
           +   VA + ++  Y++ G++ ++  +F   P ++ + W ++I GY   +  +EA ++  +
Sbjct: 314 VDLYVA-SVLMTMYIKCGELLKSKLIFDRFPSKDIIMWNSIISGYASHSLGEEALKIFYE 372

Query: 321 MPYK-----NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
           MP       N     A +S       ++E  +IF+ + +         + G A  GR +E
Sbjct: 373 MPLSGSTEPNEVTFVATLSACSYAGMVEEGLKIFESMES---------VLGRA--GRFNE 421

Query: 376 AINLFRQM-VNKDIVTWNTMIAGYAQIRQMDDA 407
           A+ +   M V  D   W +++       Q+D A
Sbjct: 422 AMEMIDSMIVEPDAAVWGSLLGACRTHSQLDLA 454


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 212/655 (32%), Positives = 340/655 (51%), Gaps = 67/655 (10%)

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           D    NA++A Y K G  + A K+   MP +N+VSWNS++SG+++NG    +   F+ + 
Sbjct: 65  DVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENG---FSKDCFDMLV 121

Query: 199 ER---------DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYAR 245
           E          D+ +   +L       D+    +      +  +   V    +++  Y++
Sbjct: 122 EMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSK 181

Query: 246 NGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-----ERNPVSWTT 300
            G + EA+ LFD+   +N V+WN MI     +G I EA  LF EM      E N V+   
Sbjct: 182 CGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLN 241

Query: 301 MIDGYVRIAKLDEARRL-----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
           ++   + I++L   + L          Y  + A    ++ Y +   +  A ++F  + T 
Sbjct: 242 ILPACLEISQLRSLKELHGYSIRHGFQYDELVAN-GFVAAYAKCGMLICAERVFYSMETK 300

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT-WNT--------------------- 393
            V  WN +I G AQ G   +A+NL+ QM    +V  W T                     
Sbjct: 301 TVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVH 360

Query: 394 -----------------MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
                            +++ Y    +   A  +F+ M + +++VSWNA+ISG+ QN   
Sbjct: 361 GFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGM-EEKSSVSWNAMISGYSQNGLP 419

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSL 496
            DAL +F  +  +G +     +   L AC+  +AL+LG++ H  A+K+  + D+FV  S 
Sbjct: 420 EDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACST 479

Query: 497 ITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
           I MYAK G I+ +  +F      D+ SWN++IA Y ++G+  E+I+LFE M   G  PD 
Sbjct: 480 IDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDG 539

Query: 557 VTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVK 616
            TFIG+L+ CSH GLV+ GLK F  M   + IEP +EHYAC++D+L RAGRLD+A  +V 
Sbjct: 540 FTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVH 599

Query: 617 GMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDE 676
            M  +P++ +W +LL  CR    +++G+I  EKL ELEP+    Y  LSN++A +GRWD+
Sbjct: 600 EMPEQPDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDD 659

Query: 677 VEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           V +VR  ++  G QK  GCSWIE+  ++H+F++GD    ++ E+  T + L  ++
Sbjct: 660 VRRVRQMIKDIGLQKDAGCSWIELGGKVHSFVAGDNLLPQSKEMSMTWRKLEKKM 714



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 154/652 (23%), Positives = 284/652 (43%), Gaps = 120/652 (18%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM------ 103
           N++I+ Y K G V+ A K+F  MP RNLVSWNS+I+G+  N   K+  ++  +M      
Sbjct: 70  NALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEG 129

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNEAK 160
             PD+ +   ++    R+ +++    +  L   L   ED    N++V  Y+K G   EA+
Sbjct: 130 LLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQ 189

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL-----MLDGYVEL 215
            L D    KN VSWN+M+ G    G +  A   F  M+ ++ +  N      +L   +E+
Sbjct: 190 MLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEI 249

Query: 216 DDLDS-----AWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAM 270
             L S      +          +V+    ++ YA+ G ++ A R+F  M  + V +WNA+
Sbjct: 250 SQLRSLKELHGYSIRHGFQYDELVA-NGFVAAYAKCGMLICAERVFYSMETKTVNSWNAL 308

Query: 271 IAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY-KNIAA- 328
           I    Q G   +A  L+I+M      +++ ++  +  I  L  A   L  + Y K +   
Sbjct: 309 IGGCAQNGDPRKALNLYIQM------TYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGF 362

Query: 329 ------------QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
                         +++S Y+       A  +FD +     V WN MI GY+Q G  ++A
Sbjct: 363 VLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDA 422

Query: 377 INLFRQMVN---------------------------------------KDIVTWNTMIAG 397
           + LFR++V+                                       +D+    + I  
Sbjct: 423 LILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDM 482

Query: 398 YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHST 457
           YA+   + ++  +F+ + K ++  SWNA+I+ +  +    +++++F  M + G+  D  T
Sbjct: 483 YAKSGCIKESRSVFDGL-KNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFT 541

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD 517
               L+ C+H   ++ G +         Y N++                QN    F   +
Sbjct: 542 FIGILTVCSHAGLVEEGLK---------YFNEM----------------QN----FHGIE 572

Query: 518 PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLK 577
           P  +  +  ++      G   +A++L  EM  +   PD   +  +LS C + G ++ G  
Sbjct: 573 P-KLEHYACVMDMLGRAGRLDDALRLVHEMPEQ---PDSRVWSSLLSFCRNFGELEIGQI 628

Query: 578 LFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDE---AFEMVKGMKIKPNAG 625
           + E + E   +EP  VE+Y  + +L + +GR D+     +M+K + ++ +AG
Sbjct: 629 VAEKLLE---LEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAG 677



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 109/205 (53%), Gaps = 5/205 (2%)

Query: 432 QNEFHLDALKIFV-LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
           +NE + DA+ +FV L+T     AD+ T  C + AC       LG  IH + IK G + D+
Sbjct: 7   RNELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDV 66

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM- 549
           FVGN+LI MY K G +  A  +F      +++SWNS+I+G++ NG + +   +  EM+  
Sbjct: 67  FVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAG 126

Query: 550 -EGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
            EG+ PD  T + VL  C+    V  G+++     ++  +   V     ++D+ S+ G L
Sbjct: 127 EEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKL-GLSEDVRVNNSLVDMYSKCGYL 185

Query: 609 DEAFEMVKGMKIKPNAGIWGTLLGA 633
            EA +M+     + NA  W T++G 
Sbjct: 186 TEA-QMLFDKNNRKNAVSWNTMIGG 209



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 92/185 (49%), Gaps = 16/185 (8%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF     I    KSG ++E+  +F  +  K+  ++N++I+AY  +G   ++ +LFE+M +
Sbjct: 473 VFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRK 532

Query: 75  RNLVSWNSMIAGYL----HNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELE 125
              +       G L    H   V+E  + F++M       P L  +A ++    R G L+
Sbjct: 533 VGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLD 592

Query: 126 KARELFDLLPNKEDTACWNAMVA-----GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG 180
            A  L   +P + D+  W+++++     G  +IG    A+KLL+  P KN+ ++ S+ + 
Sbjct: 593 DALRLVHEMPEQPDSRVWSSLLSFCRNFGELEIGQI-VAEKLLELEP-KNVENYVSLSNL 650

Query: 181 YTKNG 185
           Y  +G
Sbjct: 651 YAGSG 655


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  346 bits (888), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 188/548 (34%), Positives = 295/548 (53%), Gaps = 54/548 (9%)

Query: 217 DLDSAWKFFQKIPEQ--NVVSWVTMLSGYARNGRMLEARRLFDQMP----IRNVVAWNAM 270
           DL  A   F  I  Q  N+  W T++  ++       +  LF QM       N   + ++
Sbjct: 74  DLSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSL 133

Query: 271 IAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
             +  +     EA +L     +     +P   T++I  Y ++ +L  AR + D+   ++ 
Sbjct: 134 FKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDA 193

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
            + TA+I+GYV    +D+A ++FD+I   DVV WN MI GY Q GR +EA+  F +M   
Sbjct: 194 VSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEA 253

Query: 387 D--------------------------IVTW-------------NTMIAGYAQIRQMDDA 407
           D                          I +W             N ++  Y++  ++  A
Sbjct: 254 DVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTA 313

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
            K+F+ M + ++ + WN +I G+     + +AL +F +M +E    +  T    L ACA 
Sbjct: 314 RKLFDGM-EDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACAS 372

Query: 468 LAALQLGRQIHHLAIK----SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
           L AL LG+ +H    K    +G VN++ +  S+I MYAKCG ++ AE +F+      + S
Sbjct: 373 LGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLAS 432

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMT 583
           WN++I+G A+NG+A  A+ LFEEM+ EG  PD +TF+GVLSAC+  G V+ G + F  M 
Sbjct: 433 WNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMN 492

Query: 584 EVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLG 643
           + Y I P ++HY CMIDLL+R+G+ DEA  ++  M+++P+  IWG+LL ACR+H  ++ G
Sbjct: 493 KDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFG 552

Query: 644 RIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQ 703
               E+L ELEP+ +  Y LLSN++A AGRWD+V K+R  +   G +K PGC+ IE+   
Sbjct: 553 EYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEIDGV 612

Query: 704 IHTFLSGD 711
           +H FL GD
Sbjct: 613 VHEFLVGD 620



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/377 (28%), Positives = 172/377 (45%), Gaps = 54/377 (14%)

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
           Y ++ +L  A   F K   ++ VS+  +++GY   G + +ARRLFD++P ++VV+WNAMI
Sbjct: 172 YSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMI 231

Query: 272 AAYVQRGQIEEAARLFIEMPERN-PVSWTTMID-----GYVRIAKLDE--ARRLLDQMPY 323
           A YVQ G+ EEA   F  M E +   + +TM+      G++R  +L +     + D+   
Sbjct: 232 AGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFG 291

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
           KN+    A++  Y +   +  A ++FD +   DV+ WN MI GY      +EA+ LF  M
Sbjct: 292 KNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVM 351

Query: 384 VNKDIVT-------------------------------------------WNTMIAGYAQ 400
           + +++                                             W ++I  YA+
Sbjct: 352 LRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAK 411

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
              ++ A ++F  MG  R+  SWNA+ISG   N     AL +F  M  EG + D  T   
Sbjct: 412 CGCVEVAEQVFRSMGS-RSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVG 470

Query: 461 ALSACAHLAALQLG-RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD-P 518
            LSAC     ++LG R    +    G    L     +I + A+ G+   A++L  + +  
Sbjct: 471 VLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEME 530

Query: 519 VDVISWNSLIAGYAING 535
            D   W SL+    I+G
Sbjct: 531 PDGAIWGSLLNACRIHG 547



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 146/289 (50%), Gaps = 21/289 (7%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           I    + G +  A  +F + + ++ V++ ++I+ Y   G V+DAR+LF+++P +++VSWN
Sbjct: 169 IHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWN 228

Query: 82  SMIAGYLHNDKVKEARELFDKMFRPDLF-SWALMITCYTRKGELEKARELFDLLPN---- 136
           +MIAGY+ + + +EA   F +M   D+  + + M++  +  G L ++ EL   + +    
Sbjct: 229 AMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHL-RSLELGKWIGSWVRD 287

Query: 137 ---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
               ++    NA+V  Y+K G    A+KL D M  K+++ WN+M+ GY        A   
Sbjct: 288 RGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVL 347

Query: 194 FEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPE--------QNVVSWVTMLS 241
           FE M   +V    V++  +L     L  LD        I +         NV  W +++ 
Sbjct: 348 FEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIV 407

Query: 242 GYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
            YA+ G +  A ++F  M  R++ +WNAMI+     G  E A  LF EM
Sbjct: 408 MYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEM 456



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 155/330 (46%), Gaps = 32/330 (9%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           IT     G V++A ++F ++  K+ V++N+MI+ Y ++GR  +A   F +M + ++    
Sbjct: 200 ITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQ 259

Query: 82  SMIAGYLHNDKVKEAREL--------FDKMFRPDLFSWALMITCYTRKGELEKARELFDL 133
           S +   L       + EL         D+ F  +L     ++  Y++ GE+  AR+LFD 
Sbjct: 260 STMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDG 319

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHL 189
           + +K D   WN M+ GY  +  Y EA  L + M  +N+    V++ ++L      G + L
Sbjct: 320 MEDK-DVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDL 378

Query: 190 ASKFFEAMEER---------DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
             K+  A  ++         +V  W  ++  Y +   ++ A + F+ +  +++ SW  M+
Sbjct: 379 G-KWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMI 437

Query: 241 SGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
           SG A NG    A  LF++M         + +  +++A  Q G +E   R F  M +   +
Sbjct: 438 SGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGI 497

Query: 297 S-----WTTMIDGYVRIAKLDEARRLLDQM 321
           S     +  MID   R  K DEA+ L+  M
Sbjct: 498 SPKLQHYGCMIDLLARSGKFDEAKVLMGNM 527



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/422 (22%), Positives = 180/422 (42%), Gaps = 84/422 (19%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQ------------------------------- 43
           V + N  I    +SGR EEA+  F++M +                               
Sbjct: 224 VVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGS 283

Query: 44  --------KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKE 95
                   KN    N+++  Y+K G +  ARKLF+ M  ++++ WN+MI GY H    +E
Sbjct: 284 WVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEE 343

Query: 96  ARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLP-------NKEDTACWN 144
           A  LF+ M R    P+  ++  ++      G L+  + +   +        N  + + W 
Sbjct: 344 ALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWT 403

Query: 145 AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EER 200
           +++  YAK G    A+++  +M S+++ SWN+M+SG   NG    A   FE M     + 
Sbjct: 404 SIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQP 463

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEARRL 255
           D +++  +L    +   ++   ++F  + +   +S     +  M+   AR+G+  EA+ L
Sbjct: 464 DDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVL 523

Query: 256 FDQMPIR-NVVAWNAMIAAYVQRGQIE----EAARLFIEMPERNPVSWTTMIDGYVRIAK 310
              M +  +   W +++ A    GQ+E     A RLF E+   N  ++  + + Y    +
Sbjct: 524 MGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLF-ELEPENSGAYVLLSNIYAGAGR 582

Query: 311 LDEARRL---LDQMPYKNIAAQTAM-ISGYVQN---------------KRMDEANQIFDK 351
            D+  ++   L+    K +   T++ I G V                 + +DE +++ ++
Sbjct: 583 WDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEE 642

Query: 352 IG 353
            G
Sbjct: 643 TG 644



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 111/264 (42%), Gaps = 34/264 (12%)

Query: 402 RQMDDAVKIFEEMGKRR-NTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
           R +  A+ +F  +  +  N   WN LI           +L +F  M   G   +  T   
Sbjct: 73  RDLSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPS 132

Query: 461 ALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVD 520
              +CA   A    +Q+H  A+K        V  SLI MY++ G +++A L+F  +   D
Sbjct: 133 LFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRD 192

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEM---------------VMEG-------------- 551
            +S+ +LI GY   G+  +A +LF+E+               V  G              
Sbjct: 193 AVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQE 252

Query: 552 --VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLD 609
             V+P+  T + VLSAC H+  ++ G K              ++    ++D+ S+ G + 
Sbjct: 253 ADVSPNQSTMVSVLSACGHLRSLELG-KWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIG 311

Query: 610 EAFEMVKGMKIKPNAGIWGTLLGA 633
            A ++  GM+ K +  +W T++G 
Sbjct: 312 TARKLFDGMEDK-DVILWNTMIGG 334



 Score = 56.2 bits (134), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 7/110 (6%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYA--KCGRIQNAELLFKD--AD 517
           L+ C  + +L   +QIH L IKSG  N LF  + LI   A      +  A  LF      
Sbjct: 32  LAKCPDIPSL---KQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQ 88

Query: 518 PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
           P ++  WN+LI  +++    T ++ LF +M+  G+ P+  TF  +  +C+
Sbjct: 89  PPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCA 138


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 185/514 (35%), Positives = 291/514 (56%), Gaps = 19/514 (3%)

Query: 238 TMLSGYARNGRMLEARRLFDQMPI--RNVVAWNAMIAAYVQRGQIEEAARLFIEMP---- 291
           ++L  Y R G    AR LFD MP   R VV W+A++AA+  RG  E A RL  EM     
Sbjct: 57  SLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGG 116

Query: 292 -ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI-----AAQTAMISGYVQNKRMDEA 345
            E N ++W  ++ G  R  +  +A   L  M  + +        +  +S       +   
Sbjct: 117 VEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVG 176

Query: 346 NQIFD---KIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQI 401
            Q+     K G   D      +I  Y +CG+  E + +F +  + D+ + N +IAG ++ 
Sbjct: 177 QQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRN 236

Query: 402 RQMDDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
            Q+ +A+++F+E    G   N VSW ++++  +QN   L+A++ F  M  +G + +  T+
Sbjct: 237 AQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTI 296

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
            C L A A++AAL  GR  H  A++ G+++D++V ++L+ MYAKCGR+++A ++F     
Sbjct: 297 PCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVS 356

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
            +V+SWN++I GYA+ G A  A+ +F  M+     PD VTF  +L+AC+  GL + G   
Sbjct: 357 RNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHY 416

Query: 579 FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQ 638
           F+ M   Y + P +EHYACM+ LL RAG+LDEA++++  M  +P+A IWG+LLG+CR+H 
Sbjct: 417 FKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHG 476

Query: 639 NIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWI 698
           N+ L  +A EKL  LEP+    Y LLSN++A    WD V +VR  M+  G +K+ GCSWI
Sbjct: 477 NVDLAEVAAEKLFHLEPENAGNYVLLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSWI 536

Query: 699 EVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           E+KN++H  L+GD        I   +  L  Q+R
Sbjct: 537 EIKNKVHMLLAGDDSHPMMTAIIEKINQLNIQMR 570



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 172/394 (43%), Gaps = 46/394 (11%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMP--QRNLVSWNSMIAGYLHNDKVKEARELFD 101
           ++    +S++ AY + G   +AR LF+ MP  QR +V W++++A +      + A  L +
Sbjct: 50  RDPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLE 109

Query: 102 KMFR-----PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNY 156
           +M R     P++ +W  +++   R G   +AR+    L              G +     
Sbjct: 110 EMRRDGGVEPNVITWNGLVSGLNRSG---RARDAVVALATMHGEGLLRPDATGVSCA--- 163

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELD 216
                 L A+    +VS    L GY             +A    D      ++D Y +  
Sbjct: 164 ------LSAVGDVGLVSVGQQLHGYA-----------VKAGCRADACVVTALIDMYGKCG 206

Query: 217 DLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIA 272
                 + F +    +V S   +++G +RN ++ EA RLF +   R    NVV+W +++A
Sbjct: 207 QAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVA 266

Query: 273 AYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARR----LLDQMPYK 324
             VQ G+  EA   F EM     E N V+   ++  +  +A L   R      L +    
Sbjct: 267 CCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLH 326

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
           ++   +A++  Y +  R+ +A  IFD + + +VV WN MI GYA  G    A+ +F  M+
Sbjct: 327 DVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSML 386

Query: 385 ----NKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
                 D+VT+  ++A   Q    ++    F+EM
Sbjct: 387 KCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEM 420



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 151/325 (46%), Gaps = 26/325 (8%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR----NL 77
           I   GK G+  E +++F + S  +  + N++I+  ++N +V +A +LF++   R    N+
Sbjct: 199 IDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNV 258

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDL 133
           VSW S++A  + N K  EA E F +M      P+  +   ++  +     L   R     
Sbjct: 259 VSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCF 318

Query: 134 LPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
              K    D    +A+V  YAK G   +A+ + D M S+N+VSWN+M+ GY   GE   A
Sbjct: 319 ALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNA 378

Query: 191 SKFFEAM----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLS 241
              F +M    ++ D+V++  +L    +    +    +F+++  +  VS     +  M++
Sbjct: 379 VWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVT 438

Query: 242 GYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE----EAARLFIEMPERNPV 296
              R G++ EA  L   MP   +   W +++ +    G ++     A +LF   PE N  
Sbjct: 439 LLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPE-NAG 497

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQM 321
           ++  + + Y      D   R+ + M
Sbjct: 498 NYVLLSNIYASKKMWDRVNRVREMM 522



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 95/406 (23%), Positives = 168/406 (41%), Gaps = 72/406 (17%)

Query: 29  GRVEEAIKIFSQMS-----QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSM 83
           G  E A ++  +M      + N +T+N ++S   ++GR  DA      M    L+  ++ 
Sbjct: 99  GDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDAT 158

Query: 84  ----------------IAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKA 127
                           +   LH   VK          R D      +I  Y + G+  + 
Sbjct: 159 GVSCALSAVGDVGLVSVGQQLHGYAVKAG-------CRADACVVTALIDMYGKCGQAAEV 211

Query: 128 RELFDLLPNKEDTACWNAMVAGYAKIGNYNEA----KKLLDAMPSKNIVSWNSMLSGYTK 183
             +FD   + +  +C NA++AG ++     EA    K+ +D     N+VSW S+++   +
Sbjct: 212 VRVFDESSHMDVASC-NALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQ 270

Query: 184 NGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDL---DSAWKF-FQKIPEQNVVS 235
           NG+   A +FF  M+    E + V+   +L  +  +  L    SA  F  +K    +V  
Sbjct: 271 NGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYV 330

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM--PER 293
              ++  YA+ GR+ +AR +FD M  RNVV+WNAMI  Y   G+   A  +F  M   ++
Sbjct: 331 SSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQ 390

Query: 294 NP--VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK 351
            P  V++T ++    +    +E R    +M  +           Y  + RM+        
Sbjct: 391 KPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNE-----------YGVSPRMEH------- 432

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIA 396
                   +  M+    + G++DEA +L   M    D   W +++ 
Sbjct: 433 --------YACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLG 470



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 13/166 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM-- 72
           V+  +  +    K GRV++A  IF  M  +N V++N+MI  YA  G   +A  +F  M  
Sbjct: 328 VYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLK 387

Query: 73  --PQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELE 125
              + ++V++  ++A        +E R  F +M       P +  +A M+T   R G+L+
Sbjct: 388 CKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLD 447

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYN----EAKKLLDAMP 167
           +A +L   +P + D   W +++      GN +     A+KL    P
Sbjct: 448 EAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEP 493


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 206/624 (33%), Positives = 333/624 (53%), Gaps = 41/624 (6%)

Query: 118 YTRKGELEKARELFDLLPNKE-DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----V 172
           + + G LE A EL  +    E +T  +++++   A   +  + KK+   + S N+    V
Sbjct: 76  FCQLGNLENAMELVCMCQKSELETKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEV 135

Query: 173 SWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQN 232
               ++S Y   G++    + F+ ME+++V  WN M+  Y ++ D   +   F+ + E+ 
Sbjct: 136 LGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKG 195

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE 292
           +              R   A  LFD++  R+V++WN+MI+ YV  G  E    ++ +M  
Sbjct: 196 I-----------EGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMY 244

Query: 293 RN-PVSWTTMIDGYVRIA-----KLDEARRLL--DQMPYKNIAAQTAMISGYVQNKRMDE 344
               V   T+I   V  A      L +A   L       + I     ++  Y +   +D 
Sbjct: 245 LGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDG 304

Query: 345 ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQ 400
           A ++F+K+G  +VV W  MI GY + GR D AI L +QM    V  D+V   +++   A+
Sbjct: 305 ALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACAR 364

Query: 401 IRQMDDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLM---------TQ 448
              +D+   + + +       N    NAL+  + +      A  +F  M         T 
Sbjct: 365 SGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTM 424

Query: 449 EGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
            G+ K D  T+AC L ACA L+AL+ G++IH   +++GY +D  V N+L+ +Y KCG + 
Sbjct: 425 IGELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLG 484

Query: 508 NAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
            A LLF      D++SW  +I+GY ++G   EAI  F EM   G+ PD V+FI +L ACS
Sbjct: 485 LARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACS 544

Query: 568 HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIW 627
           H GL++ G + F  M   + IEP +EHYACM+DLLSR G L +A+E ++ + I P+A IW
Sbjct: 545 HSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIW 604

Query: 628 GTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGS 687
           G LL  CR++ +I+L     E++ ELEP+ T  Y LL+N++AEA +W+EV+++R  +   
Sbjct: 605 GALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKK 664

Query: 688 GAQKQPGCSWIEVKNQIHTFLSGD 711
           G +K PGCSWIE+K +++ F+SG+
Sbjct: 665 GLRKNPGCSWIEIKGKVNLFVSGN 688



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 110/473 (23%), Positives = 202/473 (42%), Gaps = 64/473 (13%)

Query: 20  KKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG------------------- 60
           K ++     G ++E  ++F  M +KN   +N M+S YAK G                   
Sbjct: 139 KLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEG 198

Query: 61  -RVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMI 115
            R   A +LF+++  R+++SWNSMI+GY+ N   +   E++ +M       DL +   ++
Sbjct: 199 KRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVL 258

Query: 116 TCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV 172
                 G L   + +  L      +      N ++  Y+K G+ + A ++ + M  +N+V
Sbjct: 259 VGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVV 318

Query: 173 SWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKI 228
           SW SM++GYT++G    A +  + ME+     DVV+   +L        LD+       I
Sbjct: 319 SWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYI 378

Query: 229 P----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIA------------ 272
                E N+     ++  Y + G M  A  +F  M ++++++WN MI             
Sbjct: 379 KANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACI 438

Query: 273 -------AYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
                  + ++RG+      L         V+   ++D YV+   L  AR L D +P K+
Sbjct: 439 LPACASLSALERGKEIHGYILRNGYSSDRHVA-NALVDLYVKCGVLGLARLLFDMIPSKD 497

Query: 326 IAAQTAMISGYVQNKRMDEA----NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
           + + T MISGY  +   +EA    N++ D     D V +  ++   +  G +++    F 
Sbjct: 498 LVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFY 557

Query: 382 QMVN-----KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
            M N       +  +  M+   ++   +  A +  E +    +   W AL+ G
Sbjct: 558 IMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCG 610



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 83/378 (21%), Positives = 157/378 (41%), Gaps = 69/378 (18%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR-- 75
            N  +    K G ++ A+++F +M ++N V++ SMI+ Y ++GR + A +L +QM +   
Sbjct: 289 SNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGV 348

Query: 76  --NLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARE 129
             ++V+  S++     +  +   +++ D +       +LF    ++  YT+ G ++ A  
Sbjct: 349 KLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANS 408

Query: 130 LF----------------DLLPNKEDTACW------------------------------ 143
           +F                +L P+    AC                               
Sbjct: 409 VFSTMVVKDIISWNTMIGELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRH 468

Query: 144 --NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME--- 198
             NA+V  Y K G    A+ L D +PSK++VSW  M+SGY  +G  + A   F  M    
Sbjct: 469 VANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAG 528

Query: 199 -ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-----EQNVVSWVTMLSGYARNGRMLEA 252
            E D VS+  +L        L+  W+FF  +      E  +  +  M+   +R G + +A
Sbjct: 529 IEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKA 588

Query: 253 RRLFDQMPIR-NVVAWNAMIAA---YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRI 308
               + +PI  +   W A++     Y      E+ A    E+   N   +  + + Y   
Sbjct: 589 YEFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEA 648

Query: 309 AKLDEARRLLDQMPYKNI 326
            K +E +R+ +++  K +
Sbjct: 649 EKWEEVKRMREKIGKKGL 666



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 121/297 (40%), Gaps = 72/297 (24%)

Query: 10  NKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISA-------------- 55
           N  S +F  N  +    K G ++ A  +FS M  K+ +++N+MI                
Sbjct: 382 NMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACILPA 441

Query: 56  -----------------------------------YAKNGRVNDARKLFEQMPQRNLVSW 80
                                              Y K G +  AR LF+ +P ++LVSW
Sbjct: 442 CASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSW 501

Query: 81  NSMIAGY-LH---NDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKA-------RE 129
             MI+GY +H   N+ +    E+ D    PD  S+  ++   +  G LE+        + 
Sbjct: 502 TVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKN 561

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNGEMH 188
            F++ P  E  AC   MV   ++ GN ++A + ++ +P + +   W ++L G     ++ 
Sbjct: 562 DFNIEPKLEHYAC---MVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIE 618

Query: 189 LASKFFE---AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV-----VSWV 237
           LA K  E    +E  +   + L+ + Y E +  +   +  +KI ++ +      SW+
Sbjct: 619 LAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWI 675


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 199/629 (31%), Positives = 326/629 (51%), Gaps = 70/629 (11%)

Query: 160 KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLD 219
           K  L A P+  +   N +L+ Y K+G +  A + F+ M + ++ + N +L        + 
Sbjct: 40  KTFLQAPPTFLL---NHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVP 96

Query: 220 SAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM-------PIRNVVAWNAMIA 272
              + F  +PE++ VS+  +++G++  G    + +L+  +       P R  ++   M+A
Sbjct: 97  DMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVA 156

Query: 273 A-----------YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           +           + Q  ++   A  F+  P         ++D Y ++  + +ARR+  +M
Sbjct: 157 SALSDRALGHSVHCQVLRLGFGAYAFVGSP---------LVDMYAKMGLIRDARRVFQEM 207

Query: 322 PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
             K +     +I+G ++ K +++A  +F  +   D + W  M+ G  Q G   EA+++FR
Sbjct: 208 EAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFR 267

Query: 382 QM----VNKDIVTWNTMIAG-----------------------------------YAQIR 402
           +M    V  D  T+ +++                                     Y++ R
Sbjct: 268 RMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCR 327

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
            +  A  +F  M   RN +SW A+I G+ QN    +A++ F  M  +G K D  TL   +
Sbjct: 328 SIRLAEAVFRRM-TCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVI 386

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
           S+CA+LA+L+ G Q H LA+ SG +  + V N+L+T+Y KCG I++A  LF +    D +
Sbjct: 387 SSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQV 446

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           SW +L+ GYA  G A E I LFE+M+  G+ PD VTFIGVLSACS  GLV+ G   F+ M
Sbjct: 447 SWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSM 506

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKL 642
            + + I P+ +HY CMIDL SR+GR  EA E +K M   P+A  W TLL +CR+  N+++
Sbjct: 507 QKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEI 566

Query: 643 GRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKN 702
           G+ A E L E +PQ  + Y LL +MHA  G+W EV  +R  M     +K+PGCSWI+ KN
Sbjct: 567 GKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKN 626

Query: 703 QIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           ++H F + D     ++ I   L+ L +++
Sbjct: 627 KVHIFSADDQSHPFSSRIYEKLEWLNSKM 655



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 142/606 (23%), Positives = 258/606 (42%), Gaps = 106/606 (17%)

Query: 26  GKSG-RVEEAIKIF---SQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           G++G RV  A+      + +    T   N +++AYAK+GR+  AR++F++MP  NL + N
Sbjct: 24  GRTGVRVAGAVHCLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRN 83

Query: 82  SMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKED-- 139
           ++++   H+  V +   LF  M   D  S+  +IT ++  G   ++ +L+  L  +E   
Sbjct: 84  ALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVR 143

Query: 140 ----TACWNAMVAGYAK---IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
               T     MVA       +G+    + L     +   V  + ++  Y K G +  A +
Sbjct: 144 PTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVG-SPLVDMYAKMGLIRDARR 202

Query: 193 FFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA 252
            F+ ME + VV +N ++ G +    ++ A   FQ + +++ ++W TM++G  +NG  LEA
Sbjct: 203 VFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEA 262

Query: 253 RRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDG 304
             +F +M    V      + +++ A      +EE  ++   +     E N    + ++D 
Sbjct: 263 LDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDM 322

Query: 305 YVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF-----DKIGTHD--- 356
           Y +   +  A  +  +M  +NI + TAMI GY QN   +EA + F     D I   D   
Sbjct: 323 YSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTL 382

Query: 357 -------------------------------VVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
                                          +   N ++  Y +CG +++A  LF +M  
Sbjct: 383 GSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSF 442

Query: 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVL 445
            D V+W  ++ GYAQ  +  + + +FE+M                L N            
Sbjct: 443 HDQVSWTALVTGYAQFGKAKETIDLFEKM----------------LAN------------ 474

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLG------RQIHHLAIKSGYVNDLFVGNSLITM 499
               G K D  T    LSAC+    ++ G       Q  H  +    ++D +    +I +
Sbjct: 475 ----GLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVP---IDDHY--TCMIDL 525

Query: 500 YAKCGRIQNAELLFKD-ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           Y++ GR + AE   K      D   W +L++   + GN  E  K   E ++E    +P +
Sbjct: 526 YSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGN-MEIGKWAAENLLETDPQNPAS 584

Query: 559 FIGVLS 564
           ++ + S
Sbjct: 585 YVLLCS 590



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/467 (24%), Positives = 203/467 (43%), Gaps = 61/467 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            F  N  +T   KSGR+  A ++F +M   N  T N+++SA A +  V D  +LF  MP+
Sbjct: 48  TFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPE 107

Query: 75  RNLVSWNSMIAGY----------------LHNDKVKEARELFDKM--------------- 103
           R+ VS+N++I G+                L  + V+  R     M               
Sbjct: 108 RDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHS 167

Query: 104 ---------FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIG 154
                    F    F  + ++  Y + G +  AR +F  +  K     +N ++ G  +  
Sbjct: 168 VHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKT-VVMYNTLITGLLRCK 226

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLD 210
              +AK L   M  ++ ++W +M++G T+NG    A   F  M       D  ++  +L 
Sbjct: 227 MIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILT 286

Query: 211 GYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA 266
               L  L+   +    I     E NV     ++  Y++   +  A  +F +M  RN+++
Sbjct: 287 ACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIIS 346

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRL----L 318
           W AMI  Y Q    EEA R F EM     + +  +  ++I     +A L+E  +     L
Sbjct: 347 WTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLAL 406

Query: 319 DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
                + I    A+++ Y +   +++A+++FD++  HD V W  ++ GYAQ G+  E I+
Sbjct: 407 VSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETID 466

Query: 379 LFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
           LF +M    +  D VT+  +++  ++   ++     F+ M K    V
Sbjct: 467 LFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIV 513



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/406 (23%), Positives = 182/406 (44%), Gaps = 48/406 (11%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G+Y F  +  +    K G + +A ++F +M  K  V YN++I+   +   + DA+ LF+ 
Sbjct: 178 GAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQL 237

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKA 127
           M  R+ ++W +M+ G   N    EA ++F +M       D +++  ++T       LE+ 
Sbjct: 238 MVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEG 297

Query: 128 RELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
           +++   +     +++    +A+V  Y+K  +   A+ +   M  +NI+SW +M+ GY +N
Sbjct: 298 KQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQN 357

Query: 185 GEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT-- 238
                A + F  M+    + D  +   ++     L  L+   +F        ++ ++T  
Sbjct: 358 ACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVS 417

Query: 239 --MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
             +++ Y + G + +A RLFD+M   + V+W A++  Y Q G+ +E   LF +M     +
Sbjct: 418 NALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKM-----L 472

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI-GTH 355
           +     DG   I  L    R                 +G V+     +    FD +   H
Sbjct: 473 ANGLKPDGVTFIGVLSACSR-----------------AGLVE-----KGCDYFDSMQKDH 510

Query: 356 DVVC----WNVMIKGYAQCGRMDEAINLFRQMVNK-DIVTWNTMIA 396
            +V     +  MI  Y++ GR  EA    +QM +  D   W T+++
Sbjct: 511 GIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLS 556


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 229/739 (30%), Positives = 379/739 (51%), Gaps = 93/739 (12%)

Query: 59  NGRVNDARKLFEQMPQR----NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL----FS 110
           NGR++ A    E M  +    +L +++  +   +          + +K+ + DL     +
Sbjct: 44  NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVT 103

Query: 111 WALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN 170
              +I+ Y++ G+ EKA  +F L+ +  D   W+AMV+ +A            + M  + 
Sbjct: 104 LNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFAN-----------NNMGFRA 152

Query: 171 IVSWNSML-SGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP 229
           ++++  M+ +GY  N     A+    A    + VS              DS + F  K  
Sbjct: 153 LLTFVDMIENGYYPNEYCFAAAT--RACSTAEFVSVG------------DSIFGFVIKTG 198

Query: 230 --EQNVVSWVTMLSGYARN-GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
             + +V     ++  + +  G ++ A ++F++MP RN V W  MI   +Q G   EA  L
Sbjct: 199 YLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDL 258

Query: 287 FIEM------PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGY 336
           F++M      P+R  +S   +I     +  L   ++L  Q     +         +I+ Y
Sbjct: 259 FLDMIFSGYEPDRFTLS--GVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMY 316

Query: 337 VQ---NKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE-AINLFRQMVNKDIV--- 389
            +   +  M  A +IFD+I  H+V  W  MI GY Q G  DE A++LFR M+   ++   
Sbjct: 317 AKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNH 376

Query: 390 ------------------------------------TWNTMIAGYAQIRQMDDAVKIFEE 413
                                                 N++I+ YA+  ++DDA K F+ 
Sbjct: 377 FTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDI 436

Query: 414 MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQL 473
           + ++ N +S+N +I  + +N    +AL++F  +  +G  A   T A  LS  A +  +  
Sbjct: 437 LFEK-NLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGK 495

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           G QIH   IKSG   +  V N+LI+MY++CG I++A  +F+D +  +VISW S+I G+A 
Sbjct: 496 GEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAK 555

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVE 593
           +G AT+A++LF +M+ EGV P+ VT+I VLSACSHVGLV+ G K F+ M   + + P +E
Sbjct: 556 HGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRME 615

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653
           HYAC++D+L R+G L EA + +  M  K +A +W T LGACR+H N++LG+ A + + E 
Sbjct: 616 HYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQ 675

Query: 654 EPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPK 713
           EP   + Y LLSN++A   +WDEV  +R +M+     K+ GCSW+EV+N++H F  GD  
Sbjct: 676 EPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVGDTS 735

Query: 714 QCRTAEICNTLKTLAAQIR 732
             + AEI + L+ L+ +I+
Sbjct: 736 HPKAAEIYDELQNLSVKIK 754



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 136/590 (23%), Positives = 258/590 (43%), Gaps = 75/590 (12%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQM-PQRNLVSWNSMIAGYLHNDKVKEARELFD 101
           Q ++VT NS+IS Y+K G+   A  +F  M   R+L+SW++M++ + +N+    A   F 
Sbjct: 98  QLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFV 157

Query: 102 KM----FRPDLFSWALMITCYTRKGELEKARELFDLLPN----KEDTACWNAMVAGYAK- 152
            M    + P+ + +A      +    +     +F  +      + D      ++  + K 
Sbjct: 158 DMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKG 217

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY 212
            G+   A K+ + MP +N V+W  M++   + G    A   F  M           L G 
Sbjct: 218 RGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGV 277

Query: 213 VELDDLDSAWKFFQKIPEQNVVSWVT--------MLSGYAR---NGRMLEARRLFDQMPI 261
           +            Q++  Q +   +T        +++ YA+   +G M  AR++FDQ+  
Sbjct: 278 ISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILD 337

Query: 262 RNVVAWNAMIAAYVQRGQI-EEAARLFIEM------PERNPVSWT--------------- 299
            NV +W AMI  YVQ+G   EEA  LF  M      P     S T               
Sbjct: 338 HNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQ 397

Query: 300 ------------------TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKR 341
                             ++I  Y R  ++D+AR+  D +  KN+ +   +I  Y +N  
Sbjct: 398 VFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLN 457

Query: 342 MDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI----VTWNT 393
            +EA ++F++I           +  ++ G A  G + +   +  +++   +       N 
Sbjct: 458 SEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNA 517

Query: 394 MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA 453
           +I+ Y++   ++ A ++FE+M + RN +SW ++I+GF ++ F   AL++F  M +EG + 
Sbjct: 518 LISMYSRCGNIESAFQVFEDM-EDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRP 576

Query: 454 DHSTLACALSACAHLAALQLG-RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512
           +  T    LSAC+H+  +  G +    +  + G +  +     ++ +  + G +  A + 
Sbjct: 577 NEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEA-IQ 635

Query: 513 FKDADP--VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
           F ++ P   D + W + +    ++GN  E  K   +M++E    DP  +I
Sbjct: 636 FINSMPYKADALVWRTFLGACRVHGN-LELGKHAAKMIIEQEPHDPAAYI 684



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 166/332 (50%), Gaps = 29/332 (8%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF----DKMFR 105
           NS+IS YA++GR++DARK F+ + ++NL+S+N++I  Y  N   +EA ELF    D+   
Sbjct: 415 NSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMG 474

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL 162
              F++A +++     G + K  ++   +     K + +  NA+++ Y++ GN   A ++
Sbjct: 475 ASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQV 534

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDL 218
            + M  +N++SW S+++G+ K+G    A + F  M E  V    V++  +L     +  +
Sbjct: 535 FEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLV 594

Query: 219 DSAWKFFQKI-PEQNVVS----WVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIA 272
           +  WK F+ +  E  V+     +  ++    R+G + EA +  + MP + + + W   + 
Sbjct: 595 NEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLG 654

Query: 273 AYVQRGQIE---EAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN---- 325
           A    G +E    AA++ IE    +P ++  + + Y  I+K DE   +   M  K     
Sbjct: 655 ACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKE 714

Query: 326 -----IAAQTAMISGYVQNKRMDEANQIFDKI 352
                +  +  +   YV +    +A +I+D++
Sbjct: 715 AGCSWVEVENKVHKFYVGDTSHPKAAEIYDEL 746



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 110/441 (24%), Positives = 200/441 (45%), Gaps = 76/441 (17%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM------PQRNLVSWNS 82
           G +  A K+F +M ++N VT+  MI+   + G   +A  LF  M      P R  +S   
Sbjct: 219 GDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVI 278

Query: 83  ---------MIAGYLHNDKVKE---------------------------ARELFDKMFRP 106
                    ++   LH+  ++                            AR++FD++   
Sbjct: 279 SACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDH 338

Query: 107 DLFSWALMITCYTRKGEL-EKARELF------DLLPNKEDTACWNAMVAGYA--KIGN-- 155
           ++FSW  MIT Y +KG   E+A +LF       ++PN    +      A  A  +IG   
Sbjct: 339 NVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQV 398

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
           +  A KL     S N V+ NS++S Y ++G +  A K F+ + E++++S+N ++D Y + 
Sbjct: 399 FTHAVKL--GFSSVNCVA-NSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKN 455

Query: 216 DDLDSAWKFFQKIPEQ----NVVSWVTMLSGYAR-----NGRMLEARRLFDQMPIRNVVA 266
            + + A + F +I +Q    +  ++ ++LSG A       G  + AR +   + +   V 
Sbjct: 456 LNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVC 515

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVR----IAKLDEARRLLDQMP 322
            NA+I+ Y + G IE A ++F +M +RN +SWT++I G+ +       L+   ++L++  
Sbjct: 516 -NALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGV 574

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGT-HDVVC----WNVMIKGYAQCGRMDEAI 377
             N     A++S       ++E  + F  + T H V+     +  ++    + G + EAI
Sbjct: 575 RPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAI 634

Query: 378 NLFRQMVNK-DIVTWNTMIAG 397
                M  K D + W T +  
Sbjct: 635 QFINSMPYKADALVWRTFLGA 655



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 23/213 (10%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           N    N++IS Y++ G +  A ++FE M  RN++SW S+I G+  +    +A ELF KM 
Sbjct: 511 NQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKML 570

Query: 105 ----RPDLFSWALMITCYTRKGELEKARELFD-------LLPNKEDTACWNAMVAGYAKI 153
               RP+  ++  +++  +  G + +  + F        ++P  E  AC   +V    + 
Sbjct: 571 EEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYAC---IVDILGRS 627

Query: 154 GNYNEAKKLLDAMPSK-NIVSWNSMLSGYTKNGEMHL---ASKFFEAMEERDVVSWNLML 209
           G+ +EA + +++MP K + + W + L     +G + L   A+K     E  D  ++ L+ 
Sbjct: 628 GSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLS 687

Query: 210 DGYVELDDLDSAWKFFQKIPEQNVV-----SWV 237
           + Y  +   D      + + E+ ++     SWV
Sbjct: 688 NLYASISKWDEVSNIRKAMKEKXLIKEAGCSWV 720


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 206/685 (30%), Positives = 341/685 (49%), Gaps = 84/685 (12%)

Query: 123 ELEKARELFDLLPNKEDTACWNA----------------MVAGYAKIGNYNEAKKLLDAM 166
           E++    LF    N +   C +A                +V  Y  +GN   A+   D +
Sbjct: 53  EIDDVHTLFRYCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHI 112

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
            ++++ +WN M+SGY + G      + F       ++S  L  D         S  K  +
Sbjct: 113 QNRDVYAWNLMISGYGRAGNSSEVIRCFSLF----MLSSGLTPD----YRTFPSVLKACR 164

Query: 227 KIPEQNVVSWVTMLSG--------------YARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
            + + N +  + +  G              Y+R   +  AR LFD+MP+R++ +WNAMI+
Sbjct: 165 TVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMIS 224

Query: 273 AYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAA 328
            Y Q G  +EA  L   +   + V+  +++         +    +    +       +  
Sbjct: 225 GYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFV 284

Query: 329 QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----- 383
              +I  Y +  R+ +  ++FD++   D++ WN +IK Y    +   AI+LF++M     
Sbjct: 285 SNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRI 344

Query: 384 -----------------------------------VNKDIVTWNTMIAGYAQIRQMDDAV 408
                                                +DI   N ++  YA++  +D A 
Sbjct: 345 QPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSAR 404

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK-KADHSTLACALSACAH 467
            +F  +    + +SWN +ISG+ QN F  +A++++ +M +EG+  A+  T    L AC+ 
Sbjct: 405 AVFNWL-PNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQ 463

Query: 468 LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSL 527
             AL+ G ++H   +K+G   D+FV  SL  MY KCGR+++A  LF     V+ + WN+L
Sbjct: 464 AGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTL 523

Query: 528 IAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYA 587
           IA +  +G+  +A+ LF+EM+ EGV PD +TF+ +LSACSH GLVD G   FE M   Y 
Sbjct: 524 IACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYG 583

Query: 588 IEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAV 647
           I P ++HY CM+D+  RAG+L+ A + +K M ++P+A IWG LL ACR+H N+ LG+IA 
Sbjct: 584 ITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIAS 643

Query: 648 EKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTF 707
           E L E+EP+    + LLSNM+A AG+W+ V+++R    G G +K PG S +EV N++  F
Sbjct: 644 EHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVF 703

Query: 708 LSGDPKQCRTAEICNTLKTLAAQIR 732
            +G+       E+   L  L A+++
Sbjct: 704 YTGNQTHPMYEEMYRELTALQAKLK 728



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/436 (24%), Positives = 192/436 (44%), Gaps = 85/436 (19%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISA----------------------- 55
           N  I+   +SG  +EA+ + + +   ++VT  S++SA                       
Sbjct: 220 NAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLE 279

Query: 56  ------------YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
                       YA+ GR+ D +K+F++M  R+L+SWNS+I  Y  N++   A  LF +M
Sbjct: 280 SELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEM 339

Query: 104 ----FRPDLFSWALMITCYTRKGELEKARELFDLLPNK----EDTACWNAMVAGYAKIGN 155
                +PD  +   + +  ++ G++   R +      K    ED    NA+V  YAK+G 
Sbjct: 340 RLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGL 399

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV-----SWNLMLD 210
            + A+ + + +P+ +++SWN+++SGY +NG    A + +  MEE   +     +W  +L 
Sbjct: 400 VDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLP 459

Query: 211 GYVELDDLDSAWKFFQKIPEQNV---VSWVTMLSG-YARNGRMLEARRLFDQMPIRNVVA 266
              +   L    K   ++ +  +   V  VT L+  Y + GR+ +A  LF Q+P  N V 
Sbjct: 460 ACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVP 519

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
           WN +IA +   G  E+A  LF EM                    LDE  +  D + +   
Sbjct: 520 WNTLIACHGFHGHGEKAVMLFKEM--------------------LDEGVK-PDHITF--- 555

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC-----WNVMIKGYAQCGRMDEAINLFR 381
                ++S    +  +DE    F+ + T   +      +  M+  Y + G+++ A+   +
Sbjct: 556 ---VTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIK 612

Query: 382 QM-VNKDIVTWNTMIA 396
            M +  D   W  +++
Sbjct: 613 SMSLQPDASIWGALLS 628



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 74/144 (51%), Gaps = 9/144 (6%)

Query: 26  GKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL----VSWN 81
           GK GR+E+A+ +F Q+ + N+V +N++I+ +  +G    A  LF++M    +    +++ 
Sbjct: 497 GKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFV 556

Query: 82  SMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFDLLPN 136
           ++++   H+  V E +  F+ M       P L  +  M+  Y R G+LE A +    +  
Sbjct: 557 TLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSL 616

Query: 137 KEDTACWNAMVAGYAKIGNYNEAK 160
           + D + W A+++     GN +  K
Sbjct: 617 QPDASIWGALLSACRVHGNVDLGK 640


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 205/620 (33%), Positives = 327/620 (52%), Gaps = 76/620 (12%)

Query: 156 YNEAKKLLDAMPS--KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV 213
           + EA++L D +P+  +N+ +WNS+LS Y K+G +  A   F  M ERD VSW +M+ G  
Sbjct: 79  FREARRLFDEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLN 138

Query: 214 ELDDLDSAWKFFQKI------PEQ----NVVSWV-------------------------- 237
            +     A K F  +      P Q    NV+S                            
Sbjct: 139 RVGRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVP 198

Query: 238 ---TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
              ++L+ Y + G    AR +F++MP R+V +WNAM++     G+++ A  LF  MP+R 
Sbjct: 199 VANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRT 258

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQM-PYKNIA-------------AQTAMIS------ 334
            VSW  +I GY +     +A     +M  Y  +A             A   M+S      
Sbjct: 259 IVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVH 318

Query: 335 GYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD--IVTWN 392
            Y+   RM    Q+            N +I  YA+ G ++ A  + +Q V  D  ++++ 
Sbjct: 319 AYILRSRMPYIGQVT-----------NALISMYAKSGSVENARGVMQQAVMADLNVISFT 367

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
            ++ GY ++  M  A ++F+ M  R + V+W A+I G+ QN  + +A+++F LM + G +
Sbjct: 368 ALLEGYVKLGDMKHAREMFDVMSNR-DVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPE 426

Query: 453 ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512
            +  T+A  LS CA LA L+ G+QIH  AI+S       V NS++TMYA+ G +  A  +
Sbjct: 427 PNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRV 486

Query: 513 FKDAD-PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
           F       + ++W S+I   A +G   +A+ LFEEM+  GV PD +TF+GVLSAC+HVG 
Sbjct: 487 FDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGF 546

Query: 572 VDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           VD G + F+ + + + I P + HYACM+DLL+RAG   EA E ++ M ++P+A  WG+LL
Sbjct: 547 VDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLL 606

Query: 632 GACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQK 691
            ACR+H+N  L  +A EKL  ++P  +  Y+ LSN+++  GRW++  K+    +    +K
Sbjct: 607 SACRVHKNADLAELAAEKLLSIDPGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKK 666

Query: 692 QPGCSWIEVKNQIHTFLSGD 711
           + G SW  + N++H F + D
Sbjct: 667 ETGFSWTHIGNRVHVFGADD 686



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 150/537 (27%), Positives = 264/537 (49%), Gaps = 34/537 (6%)

Query: 33  EAIKIFSQM--SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHN 90
           EA ++F ++  +Q+N  T+NS++S YAK+GR+ DAR +F +MP+R+ VSW  M+ G    
Sbjct: 81  EARRLFDEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRV 140

Query: 91  DKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTAC---W 143
            +  EA ++F  M      P  F+   +++           R++   +     ++C    
Sbjct: 141 GRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVA 200

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N+++  Y K G+   A+ + + MP +++ SWN+M+S     G M LA   FE M +R +V
Sbjct: 201 NSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIV 260

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKI-------PEQNVVSWVTMLS---GYARNGRMLEAR 253
           SWN ++ GY +      A  FF ++       P++  ++ V       G    G+ + A 
Sbjct: 261 SWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAY 320

Query: 254 RLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIE--MPERNPVSWTTMIDGYVRIAKL 311
            L  +MP    V  NA+I+ Y + G +E A  +  +  M + N +S+T +++GYV++  +
Sbjct: 321 ILRSRMPYIGQVT-NALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDM 379

Query: 312 DEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD---KIGTHD---VVCWNVMIK 365
             AR + D M  +++ A TAMI GY QN   DEA ++F    + G       V   + + 
Sbjct: 380 KHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVC 439

Query: 366 GYAQCGRMDEAINL--FRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
               C    + I+    R +  +     N+++  YA+   +  A ++F+ +  R+ TV+W
Sbjct: 440 ASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTW 499

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG-RQIHHLAI 482
            ++I    Q+    DA+ +F  M + G K D  T    LSAC H+  +  G R    L  
Sbjct: 500 TSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQD 559

Query: 483 KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGNA 537
           K G V ++     ++ + A+ G    A+   +   PV  D I+W SL++   ++ NA
Sbjct: 560 KHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQM-PVEPDAIAWGSLLSACRVHKNA 615



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 143/574 (24%), Positives = 256/574 (44%), Gaps = 86/574 (14%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  N  ++   KSGR+ +A  +F++M +++ V++  M+    + GR  +A K+F  M  
Sbjct: 96  VFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVT 155

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDK----MFRPDLFSWA----LMITCYTRKGELEK 126
             L      +   L +    EAR +  K    + +  L S       ++  Y + G+ E 
Sbjct: 156 DGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAET 215

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           AR +F+ +P +   + WNAMV+  A +G  + A  L + MP + IVSWN++++GY +NG 
Sbjct: 216 ARAVFERMPERS-VSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGL 274

Query: 187 MHLASKFFEAM--------EERDVVS--------------------------------WN 206
              A  FF  M        +E  + S                                 N
Sbjct: 275 NAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTN 334

Query: 207 LMLDGYVELDDLDSAWKFFQK--IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV 264
            ++  Y +   +++A    Q+  + + NV+S+  +L GY + G M  AR +FD M  R+V
Sbjct: 335 ALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDV 394

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARRL--- 317
           VAW AMI  Y Q G  +EA  LF  M    PE N  +   ++     +A L+  +++   
Sbjct: 395 VAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCK 454

Query: 318 -LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG-THDVVCWNVMIKGYAQCGRMDE 375
            +  +  ++ +   ++++ Y ++  +  A ++FD++    + V W  MI   AQ G  ++
Sbjct: 455 AIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGED 514

Query: 376 AINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV---SWNALIS 428
           A+ LF +M    V  D +T+  +++    +  +D+  + F+++  +   V   S  A + 
Sbjct: 515 AVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMV 574

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC--------AHLAALQLGRQIHHL 480
             L         + F+   Q   + D       LSAC        A LAA +L      L
Sbjct: 575 DLLARAGLFSEAQEFI--QQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKL------L 626

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
           +I  G        ++L  +Y+ CGR  +A  ++K
Sbjct: 627 SIDPGNSGAY---SALSNVYSACGRWNDAAKIWK 657



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 38/159 (23%)

Query: 447 TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV------------------- 487
           T     +D    A  L  C   A    GR IH  A+K+G +                   
Sbjct: 15  TAMAAASDSDHCARLLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAG 74

Query: 488 -------------------NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
                               ++F  NSL+++YAK GR+ +A  +F +    D +SW  ++
Sbjct: 75  GGGGFREARRLFDEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMV 134

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
            G    G   EAIK+F +MV +G++P   T   VLS+C+
Sbjct: 135 VGLNRVGRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCA 173


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 199/567 (35%), Positives = 306/567 (53%), Gaps = 22/567 (3%)

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI------PEQNVVSWVT 238
           G +  A K F  +++  +  +N+M+  Y +   L      FQ++      P+     +V 
Sbjct: 191 GNLRYAEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVL 250

Query: 239 MLSGYARNGRMLEARRLF---DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
              G  R+ R  E  R F     M + N V +N++I  Y +   +E A +LF EM  R+ 
Sbjct: 251 KAIGCLRDVRQGEKVRGFIVKTGMDLDNYV-YNSLIDMYYELSNVENAKKLFDEMTTRDS 309

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQM-------PYKNIAAQTAMISGYVQNKRM-DEANQ 347
           VSW  MI GYVR  + ++A     +M       P +     T      ++N  + DE + 
Sbjct: 310 VSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHN 369

Query: 348 IFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDA 407
              K         N ++  YA+CG ++ A N+F +M  K+++ W +MI+GY     + +A
Sbjct: 370 YVRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREA 429

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
             +F++    R+ V W A+I+G++Q     DA+ +F  M  +  K D  T+   L+ CA 
Sbjct: 430 RDLFDK-SPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQ 488

Query: 468 LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSL 527
           L AL+ G+ IH    ++    D+ VG +LI MY+KCG +  +  +F + +  D  SW S+
Sbjct: 489 LGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSI 548

Query: 528 IAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYA 587
           I G A+NG  +EA++LF EM   G  PD +TFIGVLSACSH GLV+ G + F  M +V+ 
Sbjct: 549 ICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHR 608

Query: 588 IEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPN---AGIWGTLLGACRMHQNIKLGR 644
           IEP VEHY C+IDLL RAG LDEA E+++ + I+       ++G LL ACR+H N+ +G 
Sbjct: 609 IEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGE 668

Query: 645 IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQI 704
              +KL  +E   +S + LL+N++A   RW++ +KVR  M+  G +K PGCS IEV   +
Sbjct: 669 RLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIV 728

Query: 705 HTFLSGDPKQCRTAEICNTLKTLAAQI 731
           H FL GDP      EIC+ L  +  Q+
Sbjct: 729 HEFLVGDPSHPEMMEICSMLNRVTGQL 755



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 140/579 (24%), Positives = 236/579 (40%), Gaps = 155/579 (26%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL 88
           G +  A KIF+ +   +   YN M+  YAK G +     LF+Q+ +  L  W        
Sbjct: 191 GNLRYAEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGL--W-------- 240

Query: 89  HNDKVKEARELFDKMFRPDLFSWALM---ITCYTRKGELEKARELFDLLPNKEDTACWNA 145
                            PD F++  +   I C     + EK R          D   +N+
Sbjct: 241 -----------------PDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNS 283

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM-------- 197
           ++  Y ++ N   AKKL D M +++ VSWN M+SGY +      A   F  M        
Sbjct: 284 LIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKP 343

Query: 198 EERDVVSW-------------------------------NLMLDGYVELDDLDSAWKFFQ 226
           +E  VVS                                N +LD Y +   L+ A   F 
Sbjct: 344 DEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCLNIARNIFD 403

Query: 227 KIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
           ++  +NV+ W +M+SGY   G + EAR LFD+ P+R+VV W AMI  YVQ    ++A  L
Sbjct: 404 EMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVAL 463

Query: 287 FIEM------PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340
           F EM      P++  V   T++ G  ++  L++ +                 I GY+   
Sbjct: 464 FREMQIQRVKPDKFTV--VTLLTGCAQLGALEQGK----------------WIHGYLDEN 505

Query: 341 RMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQ 400
           R+           T DVV    +I+ Y++CG +D+++ +F ++ +KD  +W ++I G A 
Sbjct: 506 RI-----------TMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAM 554

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
             +  +A+++F E                                M + G K D  T   
Sbjct: 555 NGKTSEALRLFSE--------------------------------MERVGAKPDDITFIG 582

Query: 461 ALSACAHLAALQLGR-------QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
            LSAC+H   ++ GR       ++H +  K  +         +I +  + G +  AE L 
Sbjct: 583 VLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHY------GCVIDLLGRAGLLDEAEELI 636

Query: 514 KDADPVD-----VISWNSLIAGYAINGNATEAIKLFEEM 547
           ++  P++     V  + +L++   I+ N     +L +++
Sbjct: 637 QEI-PIENCEIVVPLYGALLSACRIHNNVDMGERLAKKL 674



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 194/436 (44%), Gaps = 70/436 (16%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           +YV+N    I    +   VE A K+F +M+ +++V++N MIS Y +  R  DA   F +M
Sbjct: 278 NYVYNS--LIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREM 335

Query: 73  PQR--------NLVSW--------NSMIAGYLHNDKVKE--------------------- 95
            Q          +VS         N  +   +HN   KE                     
Sbjct: 336 QQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCL 395

Query: 96  --ARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKI 153
             AR +FD+M   ++  W  MI+ Y   G+L +AR+LFD  P + D   W AM+ GY + 
Sbjct: 396 NIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVR-DVVLWTAMINGYVQF 454

Query: 154 GNYNEAKKLLDAM------PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVV 203
            ++++A  L   M      P K  V   ++L+G  + G +         ++E     DVV
Sbjct: 455 HHFDDAVALFREMQIQRVKPDKFTVV--TLLTGCAQLGALEQGKWIHGYLDENRITMDVV 512

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM---- 259
               +++ Y +   +D + + F ++ +++  SW +++ G A NG+  EA RLF +M    
Sbjct: 513 VGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVG 572

Query: 260 PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVRIAKLDEA 314
              + + +  +++A    G +EE  R F  M + + +      +  +ID   R   LDEA
Sbjct: 573 AKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEA 632

Query: 315 RRLLDQMPYKN----IAAQTAMISGYVQNKRMDEANQI---FDKIGTHDVVCWNVMIKGY 367
             L+ ++P +N    +    A++S    +  +D   ++    + I + D     ++   Y
Sbjct: 633 EELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIY 692

Query: 368 AQCGRMDEAINLFRQM 383
           A   R ++A  + R+M
Sbjct: 693 ASVDRWEDAKKVRRKM 708


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 224/743 (30%), Positives = 371/743 (49%), Gaps = 83/743 (11%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQR-----NLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           +S+I+ Y K G   DA K+F+Q+P+      ++  WNS+I GY    +++E    F +M 
Sbjct: 92  SSLINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRM- 150

Query: 105 RPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLD 164
           +   +     I  Y         R + +  P  E      A++  Y K G   EA+ L  
Sbjct: 151 QSSGYKEGKQIHSYI-------VRNMLNFDPFLE-----TALIDTYFKCGRPTEARYLFK 198

Query: 165 AMPSK-NIVSWNSMLSGYTKNG--EMHLASKFFEAMEERDVVSWNLMLD----GYVELDD 217
            +  + NIV+WN M+ G+ +NG  E  L        E   VVS +        G  E   
Sbjct: 199 KLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVS 258

Query: 218 L------DSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
                  D+    F+  P  +     ++L+ Y +   +  A ++F+++P + +  WNA+I
Sbjct: 259 FGKQVHCDAIKVGFEDDPYVHT----SLLTMYGKCQMIESAEKVFNEVPDKEIELWNALI 314

Query: 272 AAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYV---RIAKLDEARRLLDQMPYK---- 324
           +AYV  G   +A R++ +M     +S +  I   +    +A L +  RL+     K    
Sbjct: 315 SAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQ 374

Query: 325 -NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
            +I  Q+A+++ Y +    + AN IF  +   DVV W  +I G+ Q  +  EA++ FR M
Sbjct: 375 SSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAM 434

Query: 384 ---------------------------------------VNKDIVTWNTMIAGYAQIRQM 404
                                                  +  D+   ++++  Y++    
Sbjct: 435 EADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFP 494

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSA 464
           + A  IF +M   +N V+WN++IS + +N     ++ +F  + +     D  +    L+A
Sbjct: 495 ERAGNIFSDM-PLKNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAA 553

Query: 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
            + +AAL  G+ +H   ++     DL V N+LI MY KCG ++ A+ +F+     ++++W
Sbjct: 554 ISSVAALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLLKYAQHIFERISEKNLVAW 613

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           NS+I GY  +G  ++AI+LF+EM   G+ PD VTF+ +LS+C+H GL++ GL LFE M  
Sbjct: 614 NSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSCNHSGLIEEGLHLFEMMKM 673

Query: 585 VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
            + IEP +EHY  ++DL  RAG L +A+  VK M ++P+  IW +LL +C++H N++LG 
Sbjct: 674 KFGIEPRMEHYVNIVDLYGRAGCLGDAYSFVKNMPVEPDRSIWLSLLCSCKIHLNLELGE 733

Query: 645 IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQI 704
           +   KL  +EP K S Y  L N++ EA  WD    +R SM+  G +K PGCSWIEV+N++
Sbjct: 734 MVANKLLNMEPSKGSNYVQLLNLYGEAELWDRTANLRASMKEKGLKKTPGCSWIEVRNKV 793

Query: 705 HTFLSGDPKQCRTAEICNTLKTL 727
             F SGD     T EI +TL +L
Sbjct: 794 DVFYSGDCSSPITTEIYDTLSSL 816



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/400 (23%), Positives = 195/400 (48%), Gaps = 29/400 (7%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           + +   + S+++ Y K   +  A K+F ++P + +  WN++I+ Y+ N    +A  ++ +
Sbjct: 273 EDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQ 332

Query: 103 M----FRPDLFSWALMITCYTRKGELEKARELFDLL---PNKEDTACWNAMVAGYAKIGN 155
           M       D F+   ++T  +  G  +  R +   +   P +      +A++  Y+K G+
Sbjct: 333 MKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGD 392

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME------ERDVVSWNLML 209
            N A  +   M  +++V+W S++SG+ +N +   A  FF AME      + D+++  +  
Sbjct: 393 SNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISA 452

Query: 210 DGYVELDDLDSAWKFF--QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
              +E  DL      F  +   + +V    ++L  Y++ G    A  +F  MP++N+VAW
Sbjct: 453 CTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAW 512

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQM-- 321
           N++I+ Y +    + +  LF ++       + VS+T+++     +A L + + +   +  
Sbjct: 513 NSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVR 572

Query: 322 ---PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
              P+ ++  +  +I  Y++   +  A  IF++I   ++V WN MI GY   G   +AI 
Sbjct: 573 LWIPF-DLQVENTLIDMYIKCGLLKYAQHIFERISEKNLVAWNSMIGGYGSHGECSKAIE 631

Query: 379 LFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           LF +M    +  D VT+ ++++       +++ + +FE M
Sbjct: 632 LFDEMRSSGIKPDDVTFLSLLSSCNHSGLIEEGLHLFEMM 671



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 150/335 (44%), Gaps = 55/335 (16%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           Q +    +++++ Y+K G  N A  +F  M +R++V+W S+I+G+  N K KEA + F  
Sbjct: 374 QSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRA 433

Query: 103 M----FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGN 155
           M     +PD    A +I+  T   +++    +   +     + D    ++++  Y+K G 
Sbjct: 434 MEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGF 493

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSW------ 205
              A  +   MP KN+V+WNS++S Y +N    L+   F  +   D+    VS+      
Sbjct: 494 PERAGNIFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAA 553

Query: 206 -----------------------------NLMLDGYVELDDLDSAWKFFQKIPEQNVVSW 236
                                        N ++D Y++   L  A   F++I E+N+V+W
Sbjct: 554 ISSVAALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLLKYAQHIFERISEKNLVAW 613

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPE 292
            +M+ GY  +G   +A  LFD+M    +    V + +++++    G IEE   LF  M  
Sbjct: 614 NSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSCNHSGLIEEGLHLFEMMKM 673

Query: 293 RNPVS-----WTTMIDGYVRIAKLDEARRLLDQMP 322
           +  +      +  ++D Y R   L +A   +  MP
Sbjct: 674 KFGIEPRMEHYVNIVDLYGRAGCLGDAYSFVKNMP 708



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 116/244 (47%), Gaps = 19/244 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  +  +    K G  E A  IFS M  KN V +NS+IS Y +N   + +  LF Q+ +
Sbjct: 478 VFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQVLR 537

Query: 75  RNL----VSWNSMIAGYLHNDKVKEARELFDKMFR---P-DLFSWALMITCYTRKGELEK 126
            +L    VS+ S++A       + + + +   + R   P DL     +I  Y + G L+ 
Sbjct: 538 NDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLLKY 597

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYT 182
           A+ +F+ +  K   A WN+M+ GY   G  ++A +L D M S  I    V++ S+LS   
Sbjct: 598 AQHIFERISEKNLVA-WNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSCN 656

Query: 183 KNGEMHLASKFFEAME-----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSW 236
            +G +      FE M+     E  +  +  ++D Y     L  A+ F + +P E +   W
Sbjct: 657 HSGLIEEGLHLFEMMKMKFGIEPRMEHYVNIVDLYGRAGCLGDAYSFVKNMPVEPDRSIW 716

Query: 237 VTML 240
           +++L
Sbjct: 717 LSLL 720



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 89/213 (41%), Gaps = 31/213 (14%)

Query: 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
           I   +Q   +++ALK++   T+        T    L ACA L+ LQ G+ IH   I +G 
Sbjct: 28  IKSLVQQRQYIEALKLY---TKSPVYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGL 84

Query: 487 VNDLFVGNSLITMYAKCGRIQNAELLFKDADPV------DVISWNSLIAGYAINGNATEA 540
            +D ++ +SLI +Y KCG   +A  +F D  P       DV  WNS+I GY   G   E 
Sbjct: 85  HSDQYITSSLINIYVKCGTFTDAVKVF-DQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEG 143

Query: 541 IKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMID 600
           +  F  M   G                H  +V   L            +P +E    +ID
Sbjct: 144 MVQFGRMQSSGYKEGKQI---------HSYIVRNMLNF----------DPFLE--TALID 182

Query: 601 LLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
              + GR  EA  + K +K + N   W  ++G 
Sbjct: 183 TYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGG 215



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 83/378 (21%), Positives = 153/378 (40%), Gaps = 52/378 (13%)

Query: 333 ISGYVQNKRMDEANQIFDKIGTHDV-VCWNVMIKGYAQCGRMDEAINLFRQMV----NKD 387
           I   VQ ++  EA +++ K   +     +  ++K  A    +     +   ++    + D
Sbjct: 28  IKSLVQQRQYIEALKLYTKSPVYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGLHSD 87

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS----WNALISGFLQNEFHLDALKIF 443
               +++I  Y +     DAVK+F+++ K   +V     WN++I G+ +     + +  F
Sbjct: 88  QYITSSLINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQF 147

Query: 444 VLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
             M   G K                     G+QIH   +++    D F+  +LI  Y KC
Sbjct: 148 GRMQSSGYKE--------------------GKQIHSYIVRNMLNFDPFLETALIDTYFKC 187

Query: 504 GRIQNAELLFKD-ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
           GR   A  LFK   D  ++++WN +I G+  NG    +++ +     E V     +F   
Sbjct: 188 GRPTEARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCT 247

Query: 563 LSACSHVGLVDGGLKLFECMTEV-YAIEPLVEHYACMIDLLSRAGR--LDEAFEMVKGMK 619
           LSAC     V  G ++     +V +  +P V        LL+  G+  + E+ E V    
Sbjct: 248 LSACGQGEFVSFGKQVHCDAIKVGFEDDPYVH-----TSLLTMYGKCQMIESAEKVFNEV 302

Query: 620 IKPNAGIWGTLLG----------ACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHA 669
                 +W  L+           A R+++ +KL  +  +  + L    +S  A L ++  
Sbjct: 303 PDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDL-- 360

Query: 670 EAGRWDEVEKVRVSMEGS 687
             GR    E V+  ++ S
Sbjct: 361 --GRLIHTEIVKRPLQSS 376



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 15/166 (9%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           +N  I    K G ++ A  IF ++S+KN V +NSMI  Y  +G  + A +LF++M    +
Sbjct: 582 ENTLIDMYIKCGLLKYAQHIFERISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGI 641

Query: 78  ----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKAR 128
               V++ S+++   H+  ++E   LF+ M       P +  +  ++  Y R G L  A 
Sbjct: 642 KPDDVTFLSLLSSCNHSGLIEEGLHLFEMMKMKFGIEPRMEHYVNIVDLYGRAGCLGDAY 701

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNE-----AKKLLDAMPSK 169
                +P + D + W +++    KI    E     A KLL+  PSK
Sbjct: 702 SFVKNMPVEPDRSIWLSLLCS-CKIHLNLELGEMVANKLLNMEPSK 746


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 187/528 (35%), Positives = 296/528 (56%), Gaps = 12/528 (2%)

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF---------DQMPIRNV 264
           +++DL  A   F +I  ++++ W T++  Y  N    +   LF         D   +  V
Sbjct: 59  KINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYLPDNFTLPCV 118

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
           +   A +   VQ G+      L I       V   ++++ Y +  ++D AR++ D M  K
Sbjct: 119 IKGCARLGV-VQEGKQIHGLALKIGFGSDVFVQ-GSLVNMYSKCGEIDCARKVFDGMIDK 176

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
           ++    ++I GY +   +D A Q+F+++   D   W V++ G ++CG+++ A  LF QM 
Sbjct: 177 DVVLWNSLIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGLSKCGKVESARKLFDQMP 236

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
            +++V+WN MI GY +    D A+++F +M    + V+WN +I+G+  N   +DA+K+F 
Sbjct: 237 CRNLVSWNAMINGYMKSGDFDSALELFYQM-PIWDLVTWNLMIAGYELNGQFMDAVKMFF 295

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG 504
           +M + G +  H+TL   LSA + LA L  GR IH    K+G+  D  +G SLI MYAKCG
Sbjct: 296 MMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCG 355

Query: 505 RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLS 564
            I++A  +F+      V  W ++I G  I+G A  A+ LF EM   G+ P+ + FIGVL+
Sbjct: 356 CIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLN 415

Query: 565 ACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNA 624
           AC+H GLVD G + F+ M   Y IEP +EHY C++D+L RAG L+EA   ++ M I PN 
Sbjct: 416 ACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNK 475

Query: 625 GIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSM 684
            IW +LLG  R H  I +G  A +++ E+ P+   CY LLSNM+A +G W++V  VR  M
Sbjct: 476 VIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMM 535

Query: 685 EGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
              G +K PGCS +E K  +H F+ GD    +T EI   +  +  +++
Sbjct: 536 YKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLK 583



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 113/415 (27%), Positives = 206/415 (49%), Gaps = 37/415 (8%)

Query: 50  NSMISAYAKNGRVND---ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM--- 103
           +S + A   + ++ND   AR +F+++ +R+L+ WN++I  Y+ N    +   LF ++   
Sbjct: 48  SSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHE 107

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNEAK 160
           + PD F+   +I    R G +++ +++  L   +    D     ++V  Y+K G  + A+
Sbjct: 108 YLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCAR 167

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
           K+ D M  K++V WNS++ GY + GE+ +A + FE M ERD  SW +++DG  +   ++S
Sbjct: 168 KVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGLSKCGKVES 227

Query: 221 AWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQI 280
           A K F ++P +N+VSW  M++GY ++G    A  LF QMPI ++V WN MIA Y   GQ 
Sbjct: 228 ARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQF 287

Query: 281 EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340
            +A ++F  M                         +L  +  +  + +  + +SG     
Sbjct: 288 MDAVKMFFMM------------------------LKLGSRPSHATLVSVLSAVSGLAVLG 323

Query: 341 RMDEANQIFDKIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYA 399
           +    +   +K G   D +    +I+ YA+CG ++ A+ +FR +  K +  W  +I G  
Sbjct: 324 KGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLG 383

Query: 400 QIRQMDDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
                + A+ +F EM   G + N + +  +++         D  + F +M  E K
Sbjct: 384 IHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYK 438



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 189/396 (47%), Gaps = 23/396 (5%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS VF Q   +    K G ++ A K+F  M  K+ V +NS+I  YA+ G ++ A +LFE+
Sbjct: 144 GSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEE 203

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           MP+R+  SW  ++ G     KV+ AR+LFD+M   +L SW  MI  Y + G+ + A ELF
Sbjct: 204 MPERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELF 263

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKL------LDAMPSK-NIVSWNSMLSGYTKN 184
             +P   D   WN M+AGY   G + +A K+      L + PS   +VS  S +SG    
Sbjct: 264 YQMP-IWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVL 322

Query: 185 GEMHLASKFFEAME-ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGY 243
           G+      + E    E D +    +++ Y +   ++SA   F+ I ++ V  W  ++ G 
Sbjct: 323 GKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGL 382

Query: 244 ARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWT 299
             +G    A  LF +M       N + +  ++ A    G +++  + F  M     +  T
Sbjct: 383 GIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPT 442

Query: 300 -----TMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMD---EANQIFD 350
                 ++D   R   L+EA+  ++ MP   N     +++ G   + ++D    A Q   
Sbjct: 443 LEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVI 502

Query: 351 KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
           ++    + C+ ++   YA  G M E ++  R+M+ K
Sbjct: 503 EVAPETIGCYILLSNMYAASG-MWEKVSHVREMMYK 537


>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 228/765 (29%), Positives = 370/765 (48%), Gaps = 82/765 (10%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM------- 103
           S +S   + G  + A  LF+ +P+   V WN++I G++ N+   +A   + +M       
Sbjct: 42  SRLSHLCRQGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPK 101

Query: 104 FRPDLFSWAL-------------MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGY 150
           F    FS  L              + C+  +     +R +++ L N   T        G 
Sbjct: 102 FDSYTFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGT 161

Query: 151 A-KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSW 205
           A    N +  +++ D M  +N+V+WN+M+S Y K   +  A K F  M    +    VS+
Sbjct: 162 AYDFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSF 221

Query: 206 NLMLDGYVELDDLDSA---WKFFQKIPEQNVVSWVTMLSG---YARNGRMLEARRLFDQM 259
             +      + D D+A   +    K+    V  +  + S    YA  G +  AR +FD  
Sbjct: 222 VNVFPAVWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCC 281

Query: 260 PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER-----NPVSWTTMIDGYVRIAKLDEA 314
             RN   WN MI  YVQ     EA  LF+++ E      + V++ + +    ++  L+  
Sbjct: 282 LERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELG 341

Query: 315 RRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC 370
           R+L    L       +    A+I  Y +   +  + ++F  +   DVV WN M+  + Q 
Sbjct: 342 RQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQN 401

Query: 371 GRMDEAINLFRQMVNK----DIVTWNTMIAGYAQIRQ--------------------MDD 406
           G  DE + L   M  +    D VT   +++  + +R                     MD 
Sbjct: 402 GLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDS 461

Query: 407 --------------AVKIFEEMGKR-RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
                         A ++FE+     R+  +WNA+I+G+ QN    +   +F  M ++  
Sbjct: 462 YLIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNV 521

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL 511
           + +  TLA  L AC  +  + LG+QIH  AI+     ++FVG +L+ MY+K G I  AE 
Sbjct: 522 RPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVGTALLDMYSKSGAITYAEN 581

Query: 512 LFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
           +F +    + +++ ++I+ Y  +G    A+ LF  M+  G+ PD VTF+ +LSACS+ GL
Sbjct: 582 VFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGL 641

Query: 572 VDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNA-GIWGTL 630
           VD GL++F+ M   Y I+P  EHY C+ D+L R GR+ EA+E VKG+  + N  GIWG+L
Sbjct: 642 VDEGLRIFQSMEREYKIQPSAEHYCCVADMLGRVGRVVEAYEFVKGLGEEGNTFGIWGSL 701

Query: 631 LGACRMHQNIKLGRIAVEKLSELEPQK--TSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688
           LGACR+H   +LG++   KL E+E     T  + LLSN++A  G WD V++VR  M   G
Sbjct: 702 LGACRIHGEFELGKVVANKLLEMEKGSSLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKG 761

Query: 689 AQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
             K+ GCSW+EV   ++ F+S D K  + AEI   L+ LA ++++
Sbjct: 762 LMKEAGCSWVEVAGHVNCFMSRDHKHPQCAEIYQMLEKLAMEMKD 806



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/425 (21%), Positives = 188/425 (44%), Gaps = 54/425 (12%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F  +  I    + G V+ A +IF    ++NT  +N+MI  Y +N    +A  LF Q+ + 
Sbjct: 256 FVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVME- 314

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
                                     + F  D  ++   +T  ++   LE  R+L   + 
Sbjct: 315 -------------------------SEQFVLDDVTFLSALTAISQLQWLELGRQLHAYIL 349

Query: 136 NKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
                      NA++  Y++ G+   + K+   M  +++V+WN+M+S + +NG       
Sbjct: 350 KSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLM 409

Query: 193 FFEAMEERDVVSWNLMLDGYVEL-DDLDS--------AWKFFQKIPEQNVVSWVTMLSGY 243
              AM+++  +  ++ L   + L  +L S        A+     I  + + S+  ++  Y
Sbjct: 410 LVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDSY--LIDMY 467

Query: 244 ARNGRMLEARRLFDQMP--IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVS 297
           A++G +  A++LF++     R+   WNAMIA Y Q G  EE   +F +M E+    N V+
Sbjct: 468 AKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVT 527

Query: 298 WTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
             +++     +  +   +++    +     +N+   TA++  Y ++  +  A  +F +  
Sbjct: 528 LASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAETL 587

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVK 409
             + V +  MI  Y Q G  + A++LF  M    +  D VT+  +++  +    +D+ ++
Sbjct: 588 EKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLR 647

Query: 410 IFEEM 414
           IF+ M
Sbjct: 648 IFQSM 652



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 147/325 (45%), Gaps = 25/325 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I    + G +  + K+FS M +++ VT+N+M+SA+ +NG  ++   L   M ++  +
Sbjct: 361 NAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFM 420

Query: 79  SWNSMIAGYL---HNDKVKE-ARELFDKMFRPDL-FSW--ALMITCYTRKGELEKARELF 131
             +  +   L    N + +E  ++    + R  + F    + +I  Y + G +  A++LF
Sbjct: 421 VDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDSYLIDMYAKSGLITTAQQLF 480

Query: 132 DLLPNKE-DTACWNAMVAGYAKIGNYNEA----KKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           +   + + D A WNAM+AGY + G   E     +K+++     N V+  S+L      G 
Sbjct: 481 EKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGT 540

Query: 187 MHLASKF----FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG 242
           + L  +           R+V     +LD Y +   +  A   F +  E+N V++ TM+S 
Sbjct: 541 IGLGKQIHGFAIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISS 600

Query: 243 YARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS- 297
           Y ++G    A  LF  M    +    V + A+++A    G ++E  R+F  M     +  
Sbjct: 601 YGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQP 660

Query: 298 ----WTTMIDGYVRIAKLDEARRLL 318
               +  + D   R+ ++ EA   +
Sbjct: 661 SAEHYCCVADMLGRVGRVVEAYEFV 685



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 14/179 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF     +    KSG +  A  +F++  +KN+VTY +MIS+Y ++G    A  LF  M  
Sbjct: 560 VFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLG 619

Query: 75  RNL----VSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELE 125
             +    V++ ++++   +   V E   +F  M R     P    +  +     R G + 
Sbjct: 620 SGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSAEHYCCVADMLGRVGRVV 679

Query: 126 KARELFDLLPNKEDT-ACWNAMVAGYAKIGNYNEAK----KLLDAMPSKNIVSWNSMLS 179
           +A E    L  + +T   W +++      G +   K    KLL+     ++  ++ +LS
Sbjct: 680 EAYEFVKGLGEEGNTFGIWGSLLGACRIHGEFELGKVVANKLLEMEKGSSLTGYHVLLS 738


>gi|255551609|ref|XP_002516850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543938|gb|EEF45464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 623

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 206/641 (32%), Positives = 328/641 (51%), Gaps = 39/641 (6%)

Query: 105 RPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLD 164
           R +LF     I+     G +  AR+LFD +PN+ DT  WN+M+  Y+++G + EA  +  
Sbjct: 2   RSNLFRITSKISALGSSGYIVHARKLFDEMPNR-DTVAWNSMITSYSQLGFHQEALSIFY 60

Query: 165 AMPSKNI----VSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSWNLMLDGYVELD 216
            M + N      ++ + LS     G     +K    +        +   N ++D Y +  
Sbjct: 61  QMRNTNTKPDHFTFTATLSACAGAGSFPFGTKIHALVIILGYHSSLPVNNSLIDMYGKCF 120

Query: 217 DLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ 276
           D  SA + F+++ + N VSW ++L  Y  +GR  EA  +F+ MP +  +AWN MIA   +
Sbjct: 121 DAFSAGQVFKEMGDINEVSWCSLLFAYTNSGRFSEASEIFNLMPRKFEIAWNTMIAGLGR 180

Query: 277 RGQIEEAARLFIEMPER--NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMIS 334
            G+IE    +F EM E    P  WT        I+   E+   L       +  ++   S
Sbjct: 181 YGEIELCLDMFREMRESLLEPDQWTYS----ALISACTESLEFLSGCMLHGLVIRSGWSS 236

Query: 335 GYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTM 394
                  M+  N I                  YA+ G +++A+ +         V+WN +
Sbjct: 237 A------MEAKNSILSL---------------YAKFGSLNDALKVVESTGRLTQVSWNAI 275

Query: 395 IAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
           I  Y ++  +++A  +F+ +   +N VSW ++I+G+ +N +  +AL+ FV M       D
Sbjct: 276 IDAYMKVGYVNEAYLMFQSL-PEKNIVSWTSMITGYARNGYGEEALRFFVAMASNCFLPD 334

Query: 455 HSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
             T    L AC+ LA L  GR +H  AI++G+   L+VGN L+ MYAKCG +  + L F 
Sbjct: 335 DFTFGAVLHACSSLAVLGHGRMVHGCAIRNGFSTYLYVGNGLVNMYAKCGDLDGSILAFH 394

Query: 515 DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574
           D    D++S+N+L+  + ++G A+EA++L+E+M+  G  PD +TFIG+L  CSH GL++ 
Sbjct: 395 DICAKDLVSFNALLFAFGLHGKASEALQLYEDMMTCGTKPDKMTFIGLLMTCSHSGLIEE 454

Query: 575 GLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPN--AGIWGTLLG 632
           G   F  M  V+ +    +H ACM+D+L R G L EA E+VK      +  A     LLG
Sbjct: 455 GRLFFNSMKSVHGLSYEADHVACMVDMLGRGGYLAEAKELVKKYSKTSDVEASSCEALLG 514

Query: 633 ACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQ 692
           AC  H  +++G    + L  LEP K   Y L SN++   G+W E E VR +M   G +K 
Sbjct: 515 ACSAHGEVEMGTYLGKTLKTLEPNKEISYVLQSNLYCVRGQWKEAEMVRKAMVDEGLKKM 574

Query: 693 PGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           PGCSWIEV+N++  F++G+     T E+  TL  L  ++R+
Sbjct: 575 PGCSWIEVRNKVTAFVAGNHLYPYTDELYKTLYFLEFEMRS 615



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/428 (25%), Positives = 194/428 (45%), Gaps = 58/428 (13%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           + N     S ISA   +G +  ARKLF++MP R+ V+WNSMI  Y      +EA  +F +
Sbjct: 2   RSNLFRITSKISALGSSGYIVHARKLFDEMPNRDTVAWNSMITSYSQLGFHQEALSIFYQ 61

Query: 103 M----FRPDLFSWALMITCYTRKGEL---EKARELFDLLPNKEDTACWNAMVAGYAKIGN 155
           M     +PD F++   ++     G      K   L  +L         N+++  Y K  +
Sbjct: 62  MRNTNTKPDHFTFTATLSACAGAGSFPFGTKIHALVIILGYHSSLPVNNSLIDMYGKCFD 121

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
              A ++   M   N VSW S+L  YT +G    AS+ F  M  +  ++WN M+ G    
Sbjct: 122 AFSAGQVFKEMGDINEVSWCSLLFAYTNSGRFSEASEIFNLMPRKFEIAWNTMIAGLGRY 181

Query: 216 DDLDSAWKFFQKI------PEQNVVSWV-------------------------------- 237
            +++     F+++      P+Q   S +                                
Sbjct: 182 GEIELCLDMFREMRESLLEPDQWTYSALISACTESLEFLSGCMLHGLVIRSGWSSAMEAK 241

Query: 238 -TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
            ++LS YA+ G + +A ++ +       V+WNA+I AY++ G + EA  +F  +PE+N V
Sbjct: 242 NSILSLYAKFGSLNDALKVVESTGRLTQVSWNAIIDAYMKVGYVNEAYLMFQSLPEKNIV 301

Query: 297 SWTTMIDGYVRIAKLDEARRLL----------DQMPYKNIAAQTAMISGYVQNKRMDEAN 346
           SWT+MI GY R    +EA R            D   +  +    + ++  + + RM    
Sbjct: 302 SWTSMITGYARNGYGEEALRFFVAMASNCFLPDDFTFGAVLHACSSLA-VLGHGRMVHGC 360

Query: 347 QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDD 406
            I +   T+  V  N ++  YA+CG +D +I  F  +  KD+V++N ++  +    +  +
Sbjct: 361 AIRNGFSTYLYV-GNGLVNMYAKCGDLDGSILAFHDICAKDLVSFNALLFAFGLHGKASE 419

Query: 407 AVKIFEEM 414
           A++++E+M
Sbjct: 420 ALQLYEDM 427



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 115/454 (25%), Positives = 184/454 (40%), Gaps = 108/454 (23%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F    KI+ LG SG +  A K+F +M  ++TV +NSMI++Y++ G   +A  +F QM
Sbjct: 3   SNLFRITSKISALGSSGYIVHARKLFDEMPNRDTVAWNSMITSYSQLGFHQEALSIFYQM 62

Query: 73  PQRN---------------------------------------LVSWNSMIAGYLHNDKV 93
              N                                       L   NS+I  Y      
Sbjct: 63  RNTNTKPDHFTFTATLSACAGAGSFPFGTKIHALVIILGYHSSLPVNNSLIDMYGKCFDA 122

Query: 94  KEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKI 153
             A ++F +M   +  SW  ++  YT  G   +A E+F+L+P K + A WN M+AG   +
Sbjct: 123 FSAGQVFKEMGDINEVSWCSLLFAYTNSGRFSEASEIFNLMPRKFEIA-WNTMIAG---L 178

Query: 154 GNYNEAKKLLDAM---------PSKNIVS--------------------------W---- 174
           G Y E +  LD           P +   S                          W    
Sbjct: 179 GRYGEIELCLDMFREMRESLLEPDQWTYSALISACTESLEFLSGCMLHGLVIRSGWSSAM 238

Query: 175 ---NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ 231
              NS+LS Y K G ++ A K  E+      VSWN ++D Y+++  ++ A+  FQ +PE+
Sbjct: 239 EAKNSILSLYAKFGSLNDALKVVESTGRLTQVSWNAIIDAYMKVGYVNEAYLMFQSLPEK 298

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
           N+VSW +M++GYARNG   EA R F  M      A N  +      G +  A        
Sbjct: 299 NIVSWTSMITGYARNGYGEEALRFFVAM------ASNCFLPDDFTFGAVLHACS------ 346

Query: 292 ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK 351
                  +  + G+ R+      R       Y        +++ Y +   +D +   F  
Sbjct: 347 -------SLAVLGHGRMVHGCAIRNGFSTYLY----VGNGLVNMYAKCGDLDGSILAFHD 395

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
           I   D+V +N ++  +   G+  EA+ L+  M+ 
Sbjct: 396 ICAKDLVSFNALLFAFGLHGKASEALQLYEDMMT 429


>gi|357511423|ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355501015|gb|AES82218.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 607

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 179/499 (35%), Positives = 289/499 (57%), Gaps = 12/499 (2%)

Query: 206 NLMLDGYVELDDLDSAWKFF-QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV 264
           N M++ Y++ +++  A K   + +   N+VSW  +++ Y ++ ++     LFD+MP+++ 
Sbjct: 12  NYMINTYIDNNNVKQAHKLLDENLLSCNIVSWNMVMTAYLQHNQIGPVHDLFDKMPLKDA 71

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP-- 322
           V+WN M++ + +    E   R F++M     V     I   +R     E   L+ Q+   
Sbjct: 72  VSWNIMLSGFQRTRNSEGLYRCFLQMGRAGVVPNDYTISTLLRAVISTELDVLVRQVHAL 131

Query: 323 ------YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
                 Y N+   +++I  Y   K  +   + F+ I   DV  WN ++  Y + G+  +A
Sbjct: 132 AFHLGHYLNVFVGSSLIRAYAGLKEEEALGRAFNDISMKDVTSWNALVSSYMELGKFVDA 191

Query: 377 INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
              F QM  ++I++W T++ GY + +Q++ A  +F++M +R N VSW A+ISG++QN+  
Sbjct: 192 QTAFDQMPQRNIISWTTLVNGYVKNKQVNKARSVFDDMSER-NVVSWTAMISGYVQNKRF 250

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSL 496
           +DALK+FVLM +   + +H T +  L ACA  ++L +G Q+H   IKSG  ND+    SL
Sbjct: 251 VDALKLFVLMFKTETRPNHFTFSSVLDACAGSSSLIMGLQLHPCIIKSGIANDVIWLTSL 310

Query: 497 ITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
           + MYAKCG +  A  +F+     +++SWN++I GYA +G AT A++ F+ M + G  PD 
Sbjct: 311 VDMYAKCGDMDAAFGVFESIRDKNLVSWNAIIGGYASHGLATRALEEFDRMKVVG-TPDE 369

Query: 557 VTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVK 616
           VTF+ VLSAC H GLV+ G K F  M   Y I+  +EHY+CM+DL  RAGR DEA  ++K
Sbjct: 370 VTFVNVLSACVHAGLVEEGEKHFTDMLTKYGIQAEMEHYSCMVDLYGRAGRFDEAENLIK 429

Query: 617 GMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDE 676
            M  +P+  +WG LL AC +H N++LG  A E++  LE      Y++LS +  E G W  
Sbjct: 430 NMPFEPDVVLWGALLAACGLHSNLELGEYAAERIRRLESSHPVSYSVLSKIQGEKGVWSS 489

Query: 677 VEKVRVSMEGSGAQKQ-PG 694
           V ++R +M+  G +KQ PG
Sbjct: 490 VNELRDTMKERGIKKQTPG 508



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/439 (24%), Positives = 199/439 (45%), Gaps = 55/439 (12%)

Query: 46  TVTYNSMISAYAKNGRVNDARKLF-EQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           T   N MI+ Y  N  V  A KL  E +   N+VSWN ++  YL ++++    +LFDKM 
Sbjct: 8   TPQLNYMINTYIDNNNVKQAHKLLDENLLSCNIVSWNMVMTAYLQHNQIGPVHDLFDKMP 67

Query: 105 RPDLFSWALMITCYTRKGELEKARELF------DLLPNKEDTACW--------------- 143
             D  SW +M++ + R    E     F       ++PN    +                 
Sbjct: 68  LKDAVSWNIMLSGFQRTRNSEGLYRCFLQMGRAGVVPNDYTISTLLRAVISTELDVLVRQ 127

Query: 144 -----------------NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
                            ++++  YA +       +  + +  K++ SWN+++S Y + G+
Sbjct: 128 VHALAFHLGHYLNVFVGSSLIRAYAGLKEEEALGRAFNDISMKDVTSWNALVSSYMELGK 187

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARN 246
              A   F+ M +R+++SW  +++GYV+   ++ A   F  + E+NVVSW  M+SGY +N
Sbjct: 188 FVDAQTAFDQMPQRNIISWTTLVNGYVKNKQVNKARSVFDDMSERNVVSWTAMISGYVQN 247

Query: 247 GRMLEARRLFDQM----PIRNVVAWNAMIAAYVQRGQIEEAARL---FIEMPERNPVSW- 298
            R ++A +LF  M       N   +++++ A      +    +L    I+    N V W 
Sbjct: 248 KRFVDALKLFVLMFKTETRPNHFTFSSVLDACAGSSSLIMGLQLHPCIIKSGIANDVIWL 307

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK---IGTH 355
           T+++D Y +   +D A  + + +  KN+ +  A+I GY  +     A + FD+   +GT 
Sbjct: 308 TSLVDMYAKCGDMDAAFGVFESIRDKNLVSWNAIIGGYASHGLATRALEEFDRMKVVGTP 367

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMVNK-----DIVTWNTMIAGYAQIRQMDDAVKI 410
           D V +  ++      G ++E    F  M+ K     ++  ++ M+  Y +  + D+A  +
Sbjct: 368 DEVTFVNVLSACVHAGLVEEGEKHFTDMLTKYGIQAEMEHYSCMVDLYGRAGRFDEAENL 427

Query: 411 FEEMGKRRNTVSWNALISG 429
            + M    + V W AL++ 
Sbjct: 428 IKNMPFEPDVVLWGALLAA 446



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 151/309 (48%), Gaps = 47/309 (15%)

Query: 32  EEAI-KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHN 90
           EEA+ + F+ +S K+  ++N+++S+Y + G+  DA+  F+QMPQRN++SW +++ GY+ N
Sbjct: 157 EEALGRAFNDISMKDVTSWNALVSSYMELGKFVDAQTAFDQMPQRNIISWTTLVNGYVKN 216

Query: 91  DKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKED-------TACW 143
            +V +AR +FD M   ++ SW  MI+ Y +      A +LF L+   E        ++  
Sbjct: 217 KQVNKARSVFDDMSERNVVSWTAMISGYVQNKRFVDALKLFVLMFKTETRPNHFTFSSVL 276

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           +A     + I        ++ +  + +++   S++  Y K G+M  A   FE++ ++++V
Sbjct: 277 DACAGSSSLIMGLQLHPCIIKSGIANDVIWLTSLVDMYAKCGDMDAAFGVFESIRDKNLV 336

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRN 263
           SWN                                ++ GYA +G    A   FD+M +  
Sbjct: 337 SWN-------------------------------AIIGGYASHGLATRALEEFDRMKVVG 365

Query: 264 V---VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVRIAKLDEAR 315
               V +  +++A V  G +EE  + F +M  +  +      ++ M+D Y R  + DEA 
Sbjct: 366 TPDEVTFVNVLSACVHAGLVEEGEKHFTDMLTKYGIQAEMEHYSCMVDLYGRAGRFDEAE 425

Query: 316 RLLDQMPYK 324
            L+  MP++
Sbjct: 426 NLIKNMPFE 434



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 162/344 (47%), Gaps = 19/344 (5%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  ++   + G+  +A   F QM Q+N +++ ++++ Y KN +VN AR +F+ M +RN+V
Sbjct: 176 NALVSSYMELGKFVDAQTAFDQMPQRNIISWTTLVNGYVKNKQVNKARSVFDDMSERNVV 235

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDLL 134
           SW +MI+GY+ N +  +A +LF  MF    RP+ F+++ ++        L    +L   +
Sbjct: 236 SWTAMISGYVQNKRFVDALKLFVLMFKTETRPNHFTFSSVLDACAGSSSLIMGLQLHPCI 295

Query: 135 PNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
                  D     ++V  YAK G+ + A  + +++  KN+VSWN+++ GY  +G    A 
Sbjct: 296 IKSGIANDVIWLTSLVDMYAKCGDMDAAFGVFESIRDKNLVSWNAIIGGYASHGLATRAL 355

Query: 192 KFFEAME---ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGY 243
           + F+ M+     D V++  +L   V    ++   K F  +  +  +      +  M+  Y
Sbjct: 356 EEFDRMKVVGTPDEVTFVNVLSACVHAGLVEEGEKHFTDMLTKYGIQAEMEHYSCMVDLY 415

Query: 244 ARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWT 299
            R GR  EA  L   MP   +VV W A++AA      +   E AA     +   +PVS++
Sbjct: 416 GRAGRFDEAENLIKNMPFEPDVVLWGALLAACGLHSNLELGEYAAERIRRLESSHPVSYS 475

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMD 343
            +               L D M  + I  QT       Q  ++D
Sbjct: 476 VLSKIQGEKGVWSSVNELRDTMKERGIKKQTPGDKNCAQFSKLD 519


>gi|449475590|ref|XP_004154496.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g09040, mitochondrial-like [Cucumis sativus]
          Length = 974

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 229/747 (30%), Positives = 378/747 (50%), Gaps = 81/747 (10%)

Query: 27  KSGRVEEAIKIFSQMSQ----KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNS 82
           + G   EA+K+F +M +     + +T  ++++AY   GR+ DARKLF Q+P  N+V+WN 
Sbjct: 220 RDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNAYVALGRLADARKLFTQIPNPNVVAWNV 279

Query: 83  MIAGYLHNDKVKEARELFDKMFRPDLFSW------------ALMITCYTRKGELEKAREL 130
           MI+G+      +EA   F ++ +  L +             +L +  Y      +  +E 
Sbjct: 280 MISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEG 339

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
            D     ++    +A+V  YAK    + AK++ +++  +NIV WN+ML G+ +NG     
Sbjct: 340 LD-----DNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEV 394

Query: 191 SKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSG 242
            +FF  M+    + D  ++  +      L  L+   +    + +    S +     ++  
Sbjct: 395 MEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDM 454

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PER--- 293
           YA++G + EAR+ F+ M I + V+WNA+I  YVQ    +EA  +F  M      P+    
Sbjct: 455 YAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSL 514

Query: 294 ------------------------------NPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
                                         +  + +++ID YV+   +  AR +   MP 
Sbjct: 515 ASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPS 574

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
           +N+ +  A+I+GY     ++EA  +F +I    +    V   G          +NL RQ 
Sbjct: 575 RNVVSVNALIAGYTMG-HLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQ- 632

Query: 384 VNKDIVTWN----------TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433
           ++  ++ W           +++  Y   ++  D+  +F E+   +  V W ALISG+ Q 
Sbjct: 633 IHGQVMKWGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQ 692

Query: 434 EFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG 493
             H  AL+ +  M  +    D +  A  L ACA +++LQ G++IH L   +G+  D    
Sbjct: 693 NHHEKALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTC 752

Query: 494 NSLITMYAKCGRIQNAELLFKDADPVD-VISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
           +SLI MYAKCG ++ +  +F++    + VISWNS+I G A NG A EA+++F++M  + +
Sbjct: 753 SSLIDMYAKCGDVKGSLQVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQQSI 812

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
            PD VTF+GVLSACSH G V  G K+F+ M   Y ++P V+H  CM+D+L R G L+EA 
Sbjct: 813 IPDEVTFLGVLSACSHAGRVSEGRKVFDLMVNNYKLQPRVDHLGCMVDILGRWGFLNEAE 872

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672
           E +  +  K +  +W TLLGACR H +   G+ A +KL EL+PQ +S Y LLS+++AE+ 
Sbjct: 873 EFINKLGCKADPMLWSTLLGACRKHGDEVRGKRAADKLMELKPQSSSSYVLLSSIYAESE 932

Query: 673 RWDEVEKVRVSMEGSGAQKQPGCSWIE 699
            W     +R  M+  G +K PG SWIE
Sbjct: 933 NWSGAVSLRREMKLKGVKKLPGYSWIE 959



 Score =  224 bits (572), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 161/589 (27%), Positives = 281/589 (47%), Gaps = 95/589 (16%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----R 105
           N ++  Y K G V+ A+K F ++ ++++ +WNS+++ YL +       + F  M+    R
Sbjct: 80  NVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNHEVR 139

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKL 162
           P+ F++A++++  +   ++   R++   +        + C   ++  YAK     +A+ +
Sbjct: 140 PNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDARLV 199

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAW 222
            D                    G ++L           D VSW  ++ GYV       A 
Sbjct: 200 FD--------------------GALNL-----------DTVSWTALIAGYVRDGFPMEAV 228

Query: 223 KFFQKI------PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ 276
           K F ++      P+Q  ++ VT+++ Y   GR+ +AR+LF Q+P  NVVAWN MI+ + +
Sbjct: 229 KVFDRMQRVGHAPDQ--ITLVTVVNAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAK 286

Query: 277 RGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYK----NIAA 328
           RG  EEA   F+E+ +        S  +++     ++ L+    +  Q   +    N+  
Sbjct: 287 RGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYV 346

Query: 329 QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----- 383
            +A+++ Y +  +MD A Q+F+ +G  ++V WN M+ G+AQ G   E +  F  M     
Sbjct: 347 GSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGP 406

Query: 384 ----------------------------------VNKDIVTWNTMIAGYAQIRQMDDAVK 409
                                                ++   N ++  YA+   + +A K
Sbjct: 407 QPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARK 466

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
            FE M K  + VSWNA+I G++Q E++ +A  +F  M   G   D  +LA  +SACA++ 
Sbjct: 467 QFELM-KIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQ 525

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
            L+ G+Q H L +K G       G+SLI MY KCG +  A  +F      +V+S N+LIA
Sbjct: 526 ELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIA 585

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
           GY + G+  EAI LF+E+ M G+ P  VTF G+L  C    +++ G ++
Sbjct: 586 GYTM-GHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQI 633



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 184/767 (23%), Positives = 328/767 (42%), Gaps = 129/767 (16%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN----- 81
           K G V+ A K FS++ +K+   +NS++S Y  +G       LF  + Q  +  WN     
Sbjct: 88  KCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHG-------LFATVVQSFVCMWNHEVRP 140

Query: 82  -----------------------------------------SMIAGYLHNDKVKEARELF 100
                                                     +I  Y     +++AR +F
Sbjct: 141 NEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDARLVF 200

Query: 101 DKMFRPDLFSWALMITCYTRKGELEKARELFDLLP---NKEDTACWNAMVAGYAKIGNYN 157
           D     D  SW  +I  Y R G   +A ++FD +    +  D      +V  Y  +G   
Sbjct: 201 DGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNAYVALGRLA 260

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYV 213
           +A+KL   +P+ N+V+WN M+SG+ K G    A  FF  +++  +     S   +L    
Sbjct: 261 DARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIA 320

Query: 214 ELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNA 269
            L  L+       +  ++    NV     +++ YA+  +M  A+++F+ +  RN+V WNA
Sbjct: 321 SLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNA 380

Query: 270 MIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARRLLDQMP--- 322
           M+  + Q G  +E    F  M    P+ +  ++T++      +  L+   +L   M    
Sbjct: 381 MLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNK 440

Query: 323 -YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
              N+    A++  Y ++  + EA + F+ +  HD V WN +I GY Q    DEA  +FR
Sbjct: 441 FASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFR 500

Query: 382 QMVNK----DIVTWNTMIAGYAQIRQM--------------------------DDAVK-- 409
           +MV+     D V+  ++++  A ++++                          D  VK  
Sbjct: 501 RMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCG 560

Query: 410 -------IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
                  +F  M   RN VS NALI+G+       +A+ +F  +   G K    T A  L
Sbjct: 561 VVLAARDVFYSM-PSRNVVSVNALIAGYTMGHLE-EAIHLFQEIQMVGLKPTEVTFAGLL 618

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDL-FVGNSLITMYAKCGRIQNAELLFKDAD-PVD 520
             C     L LGRQIH   +K G+++    V  SL+ +Y    R  ++E LF +   P  
Sbjct: 619 DGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKG 678

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE 580
           ++ W +LI+GYA   +  +A++ ++ M  + + PD   F  VL AC+ +  +  G    E
Sbjct: 679 LVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQ---E 735

Query: 581 CMTEVYAIEPLVEHYAC--MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQ 638
             + ++     ++   C  +ID+ ++ G +  + ++ + M  + N   W +++    + +
Sbjct: 736 IHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRNNVISWNSMIVG--LAK 793

Query: 639 NIKLGRIAVEKLSELE-----PQKTSCYALLSNMHAEAGRWDEVEKV 680
           N      A+E   ++E     P + +   +LS   + AGR  E  KV
Sbjct: 794 N-GYAEEALEIFKQMEQQSIIPDEVTFLGVLSAC-SHAGRVSEGRKV 838



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 119/507 (23%), Positives = 226/507 (44%), Gaps = 60/507 (11%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM----PQRNL 77
           +    K  +++ A ++F+ + ++N V +N+M+  +A+NG   +  + F  M    PQ + 
Sbjct: 351 VNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDE 410

Query: 78  VSWNSMIA-----------GYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEK 126
            ++ S+ +           G LH   +K         F  +LF    ++  Y + G L++
Sbjct: 411 FTFTSIFSACASLHYLNFGGQLHTVMIKNK-------FASNLFVANALVDMYAKSGALKE 463

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYT 182
           AR+ F+L+    D   WNA++ GY +    +EA  +   M S  +    VS  S++S   
Sbjct: 464 ARKQFELM-KIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACA 522

Query: 183 KNGEMHLASK----FFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
              E+    +      +   +    + + ++D YV+   + +A   F  +P +NVVS   
Sbjct: 523 NVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNA 582

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ--------------RGQIEEAA 284
           +++GY   G + EA  LF ++ +  +       A  +                GQ+ +  
Sbjct: 583 LIAGYTM-GHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWG 641

Query: 285 RLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY-KNIAAQTAMISGYVQNKRMD 343
             F+   E   VS   +   Y+   +  ++  L  ++ Y K +   TA+ISGY Q    +
Sbjct: 642 --FLSSSEMVCVSLLCL---YMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHE 696

Query: 344 EANQIFDKIGTHDVVCWNVMIKGYAQ-CGRMDEAIN-------LFRQMVNKDIVTWNTMI 395
           +A Q +  + + +++          + C  M    N       +F    N D VT +++I
Sbjct: 697 KALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLI 756

Query: 396 AGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADH 455
             YA+   +  ++++F EM +R N +SWN++I G  +N +  +AL+IF  M Q+    D 
Sbjct: 757 DMYAKCGDVKGSLQVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDE 816

Query: 456 STLACALSACAHLAALQLGRQIHHLAI 482
            T    LSAC+H   +  GR++  L +
Sbjct: 817 VTFLGVLSACSHAGRVSEGRKVFDLMV 843



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 150/298 (50%), Gaps = 12/298 (4%)

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
           N ++  Y +   +D A K F  + ++++  +WN+++S +L +      ++ FV M     
Sbjct: 80  NVIVDLYVKCGNVDFAQKAFSRL-EKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNHEV 138

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL 511
           + +  T A  LSAC+ L  +  GRQ+H    K+G+    F    LI MYAKC  +++A L
Sbjct: 139 RPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDARL 198

Query: 512 LFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
           +F  A  +D +SW +LIAGY  +G   EA+K+F+ M   G APD +T + V++A   +G 
Sbjct: 199 VFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNAYVALGR 258

Query: 572 VDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA---FEMVKGMKIKPNAGIWG 628
           +    KLF   T++    P V  +  MI   ++ G  +EA   F  +K   +K      G
Sbjct: 259 LADARKLF---TQI--PNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLG 313

Query: 629 TLLGACRMHQNIKLGRIAVEKLSELEPQKTSCY--ALLSNMHAEAGRWDEVEKVRVSM 684
           ++L A      +  G + V   +  E    + Y  + L NM+A+  + D  ++V  S+
Sbjct: 314 SVLSAIASLSMLNYGSM-VHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSL 370



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 56/108 (51%)

Query: 468 LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSL 527
           L AL   + IH  ++K G      +GN ++ +Y KCG +  A+  F   +  DV +WNS+
Sbjct: 54  LQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSV 113

Query: 528 IAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
           ++ Y  +G     ++ F  M    V P+  TF  VLSACS +  V+ G
Sbjct: 114 LSMYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFG 161



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 30/156 (19%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQK----NTVTYNSMISAYAKNGRVNDARKLFE 70
           V + N  I  L K+G  EEA++IF QM Q+    + VT+  ++SA +  GRV++ RK+F+
Sbjct: 781 VISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHAGRVSEGRKVFD 840

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
            M               ++N K++           P +     M+    R G L +A E 
Sbjct: 841 LM---------------VNNYKLQ-----------PRVDHLGCMVDILGRWGFLNEAEEF 874

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
            + L  K D   W+ ++    K G+    K+  D +
Sbjct: 875 INKLGCKADPMLWSTLLGACRKHGDEVRGKRAADKL 910


>gi|144923518|gb|ABP02616.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 501

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 173/437 (39%), Positives = 271/437 (62%), Gaps = 9/437 (2%)

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK 183
           ++KAR+ + +        C N+ ++ + + G+ + A ++ D+MP KN+ SWN ML+GY K
Sbjct: 19  VQKARDTYIV-------KCTNS-ISTHMRNGHCHLALRVFDSMPYKNLFSWNLMLTGYVK 70

Query: 184 NGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGY 243
           N  +  A   F+ M ++D VSWN+ML GYV    +D A   F  +P ++ +SW  +L+ Y
Sbjct: 71  NRRLVDARNLFDLMPQKDAVSWNVMLSGYVRSGCVDEAKLVFDNMPYKDSISWNGLLAVY 130

Query: 244 ARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMID 303
            +NGR+ EARRLF+      +++WN ++  YV+R  + +A RLF  MP RN +SW TMI 
Sbjct: 131 VQNGRLEEARRLFESKVDWELISWNCLMGGYVKRKMLGDARRLFDHMPVRNAISWNTMIS 190

Query: 304 GYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVM 363
           GY R   L +ARRL ++ P +++   TAM+  YVQ+  +DEA ++FD++     + +NVM
Sbjct: 191 GYARDGDLLQARRLFEESPVRDVFTWTAMVFAYVQSGMLDEARRVFDEMPGKREMAYNVM 250

Query: 364 IKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
           I GY Q  +MD A  LF  M  +++ +WNT+I+GY Q   +  A ++F+ M  +R+ VSW
Sbjct: 251 IAGYVQYKKMDMARELFEAMPCRNVGSWNTIISGYGQNGDIAQARELFDMM-TQRDCVSW 309

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
            A+I+G+ Q   +   + + V M ++GK  + ST  CALS CA +AAL LG+Q+H  A+K
Sbjct: 310 AAIIAGYAQTGHYEKVMHMLVKMKRDGKSLNRSTFCCALSTCAGMAALVLGKQVHGQAVK 369

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
           +GY N   VGN+L+ MY KCG I  A  +F+     D+ISWN+++AGYA +G   +A+ +
Sbjct: 370 TGYDNGCLVGNALLEMYCKCGSIGEAYDVFERMQLKDIISWNTMLAGYARHGFGRQALLV 429

Query: 544 FEEMVMEGVAPDPVTFI 560
           F+ M   G  PD +T +
Sbjct: 430 FDSMKTAGFKPDEITML 446



 Score =  265 bits (677), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 142/414 (34%), Positives = 236/414 (57%), Gaps = 13/414 (3%)

Query: 11  KGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFE 70
           + +Y+      I+   ++G    A+++F  M  KN  ++N M++ Y KN R+ DAR LF+
Sbjct: 23  RDTYIVKCTNSISTHMRNGHCHLALRVFDSMPYKNLFSWNLMLTGYVKNRRLVDARNLFD 82

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
            MPQ++ VSWN M++GY+ +  V EA+ +FD M   D  SW  ++  Y + G LE+AR L
Sbjct: 83  LMPQKDAVSWNVMLSGYVRSGCVDEAKLVFDNMPYKDSISWNGLLAVYVQNGRLEEARRL 142

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           F+   + E  + WN ++ GY K     +A++L D MP +N +SWN+M+SGY ++G++  A
Sbjct: 143 FESKVDWELIS-WNCLMGGYVKRKMLGDARRLFDHMPVRNAISWNTMISGYARDGDLLQA 201

Query: 191 SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRML 250
            + FE    RDV +W  M+  YV+   LD A + F ++P +  +++  M++GY +  +M 
Sbjct: 202 RRLFEESPVRDVFTWTAMVFAYVQSGMLDEARRVFDEMPGKREMAYNVMIAGYVQYKKMD 261

Query: 251 EARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAK 310
            AR LF+ MP RNV +WN +I+ Y Q G I +A  LF  M +R+ VSW  +I GY +   
Sbjct: 262 MARELFEAMPCRNVGSWNTIISGYGQNGDIAQARELFDMMTQRDCVSWAAIIAGYAQTGH 321

Query: 311 LDEARRLLDQMPY--KNIAAQT--------AMISGYVQNKRMDEANQIFDKIGTHDVVCW 360
            ++   +L +M    K++   T        A ++  V  K++    Q       +  +  
Sbjct: 322 YEKVMHMLVKMKRDGKSLNRSTFCCALSTCAGMAALVLGKQVH--GQAVKTGYDNGCLVG 379

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           N +++ Y +CG + EA ++F +M  KDI++WNTM+AGYA+      A+ +F+ M
Sbjct: 380 NALLEMYCKCGSIGEAYDVFERMQLKDIISWNTMLAGYARHGFGRQALLVFDSM 433


>gi|255542982|ref|XP_002512554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548515|gb|EEF50006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 544

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 183/456 (40%), Positives = 267/456 (58%), Gaps = 33/456 (7%)

Query: 115 ITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSW 174
           I+ + R G++ +AR++FD LP K     WNA+VAGY +     EA  L + MP +N VSW
Sbjct: 24  ISHFARIGQINRARKIFDELPYK-TIISWNAIVAGYFQNKQPREAHDLFNKMPDRNTVSW 82

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
           N ++SGY KNG ++ A + F+ M ER+VVSW  M+ GY++   +  A   F ++PE+NVV
Sbjct: 83  NGLISGYVKNGMINEAREVFDKMPERNVVSWTAMVRGYIQEGMIKQAESLFWEMPEKNVV 142

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
           SW  ML G   +GR+ EA +L+D MP+++VVA   MI      G++ EA  +F EMP+RN
Sbjct: 143 SWTVMLGGLIEDGRVNEAIKLYDLMPLKDVVARTNMIGGLCMEGRLSEAREIFDEMPKRN 202

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
            V+WTTMI GY    K+D AR+L + MP KN    TAM+ GY ++ R+ EA ++F+ +  
Sbjct: 203 VVAWTTMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLMGYTRSGRIKEAAELFEAMPM 262

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
             V   N MI G+ Q G + +A   F QM  KD  TW+ MI             K++E  
Sbjct: 263 KPVPACNEMIIGFGQSGEVGKAKWTFDQMREKDDGTWSAMI-------------KVYERK 309

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
           G                     L+AL +F LM +EG + +  ++   LS C  LA+L  G
Sbjct: 310 G-------------------LELEALDLFRLMQREGVRPNFPSIISILSVCGSLASLDYG 350

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
           RQ+H   ++S +  D++V + LITMY KCG +  A+ +F      D + WNS+I GYA +
Sbjct: 351 RQVHTQLVRSQFDFDVYVSSVLITMYIKCGDLVKAKRVFDRFSMKDTVMWNSIITGYAQH 410

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
           G   EA+++F EM+  G++PD +TFIGVL+ACS+ G
Sbjct: 411 GLGEEALEVFFEMLSSGISPDEITFIGVLTACSYSG 446



 Score =  259 bits (663), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 138/406 (33%), Positives = 232/406 (57%), Gaps = 9/406 (2%)

Query: 17  NQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRN 76
           + N +I+   + G++  A KIF ++  K  +++N++++ Y +N +  +A  LF +MP RN
Sbjct: 19  SSNSQISHFARIGQINRARKIFDELPYKTIISWNAIVAGYFQNKQPREAHDLFNKMPDRN 78

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN 136
            VSWN +I+GY+ N  + EARE+FDKM   ++ SW  M+  Y ++G +++A  LF  +P 
Sbjct: 79  TVSWNGLISGYVKNGMINEAREVFDKMPERNVVSWTAMVRGYIQEGMIKQAESLFWEMPE 138

Query: 137 KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEA 196
           K +   W  M+ G  + G  NEA KL D MP K++V+  +M+ G    G +  A + F+ 
Sbjct: 139 K-NVVSWTVMLGGLIEDGRVNEAIKLYDLMPLKDVVARTNMIGGLCMEGRLSEAREIFDE 197

Query: 197 MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF 256
           M +R+VV+W  M+ GY   + +D A K F+ +P++N V+W  ML GY R+GR+ EA  LF
Sbjct: 198 MPKRNVVAWTTMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLMGYTRSGRIKEAAELF 257

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVR----IAKLD 312
           + MP++ V A N MI  + Q G++ +A   F +M E++  +W+ MI  Y R    +  LD
Sbjct: 258 EAMPMKPVPACNEMIIGFGQSGEVGKAKWTFDQMREKDDGTWSAMIKVYERKGLELEALD 317

Query: 313 EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI----GTHDVVCWNVMIKGYA 368
             R +  +    N  +  +++S       +D   Q+  ++       DV   +V+I  Y 
Sbjct: 318 LFRLMQREGVRPNFPSIISILSVCGSLASLDYGRQVHTQLVRSQFDFDVYVSSVLITMYI 377

Query: 369 QCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           +CG + +A  +F +   KD V WN++I GYAQ    ++A+++F EM
Sbjct: 378 KCGDLVKAKRVFDRFSMKDTVMWNSIITGYAQHGLGEEALEVFFEM 423



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 144/506 (28%), Positives = 242/506 (47%), Gaps = 75/506 (14%)

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR 262
           +S N  +  +  +  ++ A K F ++P + ++SW  +++GY +N +  EA  LF++MP R
Sbjct: 18  ISSNSQISHFARIGQINRARKIFDELPYKTIISWNAIVAGYFQNKQPREAHDLFNKMPDR 77

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
           N V+WN +I+ YV+ G I EA  +F +MPERN VSWT M+ GY++   + +A  L  +MP
Sbjct: 78  NTVSWNGLISGYVKNGMINEAREVFDKMPERNVVSWTAMVRGYIQEGMIKQAESLFWEMP 137

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
            KN+ + T M+ G +++ R++EA +++D +   DVV    MI G    GR+ EA  +F +
Sbjct: 138 EKNVVSWTVMLGGLIEDGRVNEAIKLYDLMPLKDVVARTNMIGGLCMEGRLSEAREIFDE 197

Query: 383 MVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI 442
           M  +++V W TMI+GYA   ++D A K+FE M  + N V+W A++ G+ ++    +A ++
Sbjct: 198 MPKRNVVAWTTMISGYAMNNKVDVARKLFEVMPDK-NEVTWTAMLMGYTRSGRIKEAAEL 256

Query: 443 FVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
           F  M  +            + AC                            N +I  + +
Sbjct: 257 FEAMPMK-----------PVPAC----------------------------NEMIIGFGQ 277

Query: 503 CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
            G +  A+  F      D  +W+++I  Y   G   EA+ LF  M  EGV P+  + I +
Sbjct: 278 SGEVGKAKWTFDQMREKDDGTWSAMIKVYERKGLELEALDLFRLMQREGVRPNFPSIISI 337

Query: 563 LSACSHVGLVDGGLKLFECMT------EVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVK 616
           LS C  +  +D G ++   +       +VY    L+  Y    DL+ +A R+ + F M  
Sbjct: 338 LSVCGSLASLDYGRQVHTQLVRSQFDFDVYVSSVLITMYIKCGDLV-KAKRVFDRFSM-- 394

Query: 617 GMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDE 676
                 +  +W +++     H    LG  A+E   E+     S               DE
Sbjct: 395 -----KDTVMWNSIITGYAQH---GLGEEALEVFFEMLSSGISP--------------DE 432

Query: 677 VEKVRV----SMEGSGAQKQPGCSWI 698
           +  + V    S  G   +KQP C  I
Sbjct: 433 ITFIGVLTACSYSGKHRRKQPPCKLI 458



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 139/253 (54%), Gaps = 9/253 (3%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V  +   I  L   GR+ EA +IF +M ++N V + +MIS YA N +V+ ARKLFE MP 
Sbjct: 172 VVARTNMIGGLCMEGRLSEAREIFDEMPKRNVVAWTTMISGYAMNNKVDVARKLFEVMPD 231

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           +N V+W +M+ GY  + ++KEA ELF+ M    + +   MI  + + GE+ KA+  FD +
Sbjct: 232 KNEVTWTAMLMGYTRSGRIKEAAELFEAMPMKPVPACNEMIIGFGQSGEVGKAKWTFDQM 291

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI-VSWNSMLSGYTKNGEM------ 187
             K+D   W+AM+  Y + G   EA  L   M  + +  ++ S++S  +  G +      
Sbjct: 292 REKDD-GTWSAMIKVYERKGLELEALDLFRLMQREGVRPNFPSIISILSVCGSLASLDYG 350

Query: 188 -HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARN 246
             + ++   +  + DV   ++++  Y++  DL  A + F +   ++ V W ++++GYA++
Sbjct: 351 RQVHTQLVRSQFDFDVYVSSVLITMYIKCGDLVKAKRVFDRFSMKDTVMWNSIITGYAQH 410

Query: 247 GRMLEARRLFDQM 259
           G   EA  +F +M
Sbjct: 411 GLGEEALEVFFEM 423


>gi|302761102|ref|XP_002963973.1| hypothetical protein SELMODRAFT_81279 [Selaginella moellendorffii]
 gi|300167702|gb|EFJ34306.1| hypothetical protein SELMODRAFT_81279 [Selaginella moellendorffii]
          Length = 640

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 184/634 (29%), Positives = 320/634 (50%), Gaps = 43/634 (6%)

Query: 62  VNDARK----LFEQMPQR----NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWAL 113
           + DAR+    +FE++  R    ++   NS++  Y      +++R +FD     +  SW  
Sbjct: 23  LTDARRAHTRIFEELGDRAATDDVFLANSLVQSYGRCGSAEDSRWVFDATRAKNAHSWVS 82

Query: 114 MITCYTRKGELEKARELFDLLP--NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI 171
           M+  Y   G L++A+  F  +P  N+ D    N ++  +++ G   EAK+L D  P + +
Sbjct: 83  MLAAYAHNGHLDEAKRFFAAMPDKNRSDPVACNILIGVHSQCGEIGEAKRLFDQAPDRTV 142

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ 231
           VS+N+++  + ++G +  A   F +M ER +VSWN ++    E   +    + F + P++
Sbjct: 143 VSYNTLIQAFARSGHLIYAKWMFHSMPERSIVSWNSIISACGEHGLVQETKEIFDRAPQR 202

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
           NV+SW  M+  Y+ +G + +A  LF  M  R+V++W  MI  Y   G++E A+  F  MP
Sbjct: 203 NVISWNAMIQAYSSSGHLGDASALFQTMRERSVISWTVMIVGYAHSGELESASAAFDRMP 262

Query: 292 ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK 351
           ER   +W  +I  + +   L  A RL D MP ++  +  AM+     +  +D A ++F +
Sbjct: 263 ERGVAAWNAIISAHGQSKNLTAAERLFDSMPERSTVSWNAMLQLLADSGEIDRAKELFAR 322

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIF 411
           +   DV+ WN  +K +A+ G +D A+ LF +M   + ++WN +      +   +++  ++
Sbjct: 323 VPRRDVISWNTAVKLHAELGDVDGAMGLFHKMPQWNSISWNILFHACGSV---EESKHLY 379

Query: 412 EEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAAL 471
           + M       SW  ++S                           +T+   L+   HL+A 
Sbjct: 380 DTM-PVHGIESWTTMLS----------------------TSVSETTILTVLAHNGHLSA- 415

Query: 472 QLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGY 531
              R+  H   ++  V       +++  YA+ G ++ A+ LF        +SWN+++  Y
Sbjct: 416 --ARECFHSMAETTIV----AQTAMLAAYAQNGHVKEAKELFDSMPRTSFVSWNAMVTAY 469

Query: 532 AINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL 591
           A NG+  EA++LF  MV+ G  PD +TF  +L A SH G+ D G   F  M   Y + P+
Sbjct: 470 AQNGHPREALELFHSMVLHGERPDEMTFSSILLASSHNGMADRGWSYFASMVPDYCVRPV 529

Query: 592 VEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLS 651
            +H+ CM+D   RAGRL EA E+ + M  + +  +W +LLGACR  ++++ G     KL 
Sbjct: 530 RDHFYCMVDAFGRAGRLAEAMELAERMPFEADVVVWRSLLGACRTSRDVETGAFVAHKLF 589

Query: 652 ELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685
           E +P  +  Y +L+ M+A AG  DE  KV   ME
Sbjct: 590 EADPGDSVAYTILAGMYATAGMKDEEAKVMKLME 623



 Score =  272 bits (695), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 164/600 (27%), Positives = 291/600 (48%), Gaps = 29/600 (4%)

Query: 5   LKSIGNKGSY--VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRV 62
            + +G++ +   VF  N  +   G+ G  E++  +F     KN  ++ SM++AYA NG +
Sbjct: 34  FEELGDRAATDDVFLANSLVQSYGRCGSAEDSRWVFDATRAKNAHSWVSMLAAYAHNGHL 93

Query: 63  NDARKLFEQMPQRNL---VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYT 119
           ++A++ F  MP +N    V+ N +I  +    ++ EA+ LFD+     + S+  +I  + 
Sbjct: 94  DEAKRFFAAMPDKNRSDPVACNILIGVHSQCGEIGEAKRLFDQAPDRTVVSYNTLIQAFA 153

Query: 120 RKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLS 179
           R G L  A+ +F  +P +     WN++++   + G   E K++ D  P +N++SWN+M+ 
Sbjct: 154 RSGHLIYAKWMFHSMPERS-IVSWNSIISACGEHGLVQETKEIFDRAPQRNVISWNAMIQ 212

Query: 180 GYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTM 239
            Y+ +G +  AS  F+ M ER V+SW +M+ GY    +L+SA   F ++PE+ V +W  +
Sbjct: 213 AYSSSGHLGDASALFQTMRERSVISWTVMIVGYAHSGELESASAAFDRMPERGVAAWNAI 272

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWT 299
           +S + ++  +  A RLFD MP R+ V+WNAM+      G+I+ A  LF  +P R+ +SW 
Sbjct: 273 ISAHGQSKNLTAAERLFDSMPERSTVSWNAMLQLLADSGEIDRAKELFARVPRRDVISWN 332

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
           T +  +  +  +D A  L  +MP  N  +   +         ++E+  ++D +  H +  
Sbjct: 333 TAVKLHAELGDVDGAMGLFHKMPQWNSISWNILFHAC---GSVEESKHLYDTMPVHGIES 389

Query: 360 WNVMIKG----------YAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVK 409
           W  M+             A  G +  A   F  M    IV    M+A YAQ   + +A +
Sbjct: 390 WTTMLSTSVSETTILTVLAHNGHLSAARECFHSMAETTIVAQTAMLAAYAQNGHVKEAKE 449

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           +F+ M  R + VSWNA+++ + QN    +AL++F  M   G++ D  T +  L A +H  
Sbjct: 450 LFDSM-PRTSFVSWNAMVTAYAQNGHPREALELFHSMVLHGERPDEMTFSSILLASSHNG 508

Query: 470 ALQLGRQIHHLAIKSGY----VNDLFVGNSLITMYAKCGRIQNA-ELLFKDADPVDVISW 524
               G   +  ++   Y    V D F    ++  + + GR+  A EL  +     DV+ W
Sbjct: 509 MADRGWS-YFASMVPDYCVRPVRDHFY--CMVDAFGRAGRLAEAMELAERMPFEADVVVW 565

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
            SL+ G        E        + E    D V +  +    +  G+ D   K+ + M +
Sbjct: 566 RSLL-GACRTSRDVETGAFVAHKLFEADPGDSVAYTILAGMYATAGMKDEEAKVMKLMEQ 624


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 209/642 (32%), Positives = 340/642 (52%), Gaps = 56/642 (8%)

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE---RDV 202
           +V+ + K G+ +EA ++   +  K    +++ML GY +N  +  A  FF  M     R V
Sbjct: 115 LVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPV 174

Query: 203 V-SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG----YARNGRMLEARRLFD 257
           V ++  +L    +  DL    +   ++      S V  ++G    YA+   + EA ++FD
Sbjct: 175 VYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFD 234

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE--RNPVSWT---------------- 299
           +MP R++V WN +I+ Y Q G  + A  L + M E  + P S T                
Sbjct: 235 RMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRI 294

Query: 300 ---------------------TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
                                 ++D Y +   +  AR + D+M  K + +  +MI GYVQ
Sbjct: 295 GRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQ 354

Query: 339 NKRMDEANQIFDKIGTHDVVCWNVMIKGY----AQCGRMDEA---INLFRQM-VNKDIVT 390
           N     A +IF K+    V   NV + G     A  G +++      L  Q+ +  D+  
Sbjct: 355 NGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSV 414

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
            N++I+ Y++ +++D A +IFE + + +  VSWNA+I G+ QN    +A+  F  M  + 
Sbjct: 415 MNSLISMYSKCKRVDIAAEIFENL-QHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQN 473

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
            K D  T+   + A A L+ L   + IH L I++    ++FV  +L+ MYAKCG +  A 
Sbjct: 474 IKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTAR 533

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
            LF   D   V +WN++I GY  +G    A++LFE+M  E + P+ VTF+ VLSACSH G
Sbjct: 534 KLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSG 593

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
           LV+ G + F  M + Y +EP ++HY  M+DLL RA RL+EA++ ++ M I+P   ++G +
Sbjct: 594 LVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAM 653

Query: 631 LGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQ 690
           LGACR+H+N++LG  A  ++ +L+P     + LL+N++A A  WD+V +VR +ME  G Q
Sbjct: 654 LGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQ 713

Query: 691 KQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           K PG S +E++N++HTF SG     +  +I   L+TL  +I+
Sbjct: 714 KTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETLGNRIK 755



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 116/404 (28%), Positives = 199/404 (49%), Gaps = 37/404 (9%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           N      +++ YAK   V +A K+F++MP+R+LV WN++I+GY  N   K A EL  +M 
Sbjct: 209 NVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQ 268

Query: 104 ---FRPDLFSWALMITCYTRKGELEKAREL--FDLLPNKED-TACWNAMVAGYAKIGNYN 157
               RPD  +   ++      G L   R +  + +    E       A+V  Y+K G+  
Sbjct: 269 EEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVG 328

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV---- 213
            A+ + D M  K +VSWNSM+ GY +NG+   A + F+ M +  V   N+ + G +    
Sbjct: 329 TARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACA 388

Query: 214 ELDDLDSAWKFFQKIPEQ-----NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN 268
           +L D++   +F  K+ +Q     +V    +++S Y++  R+  A  +F+ +  + +V+WN
Sbjct: 389 DLGDVEQG-RFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWN 447

Query: 269 AMIAAYVQRGQIEEAARLFIEMPERN--PVSWT--TMIDGYVRIAKLDEA--------RR 316
           AMI  Y Q G+I EA   F +M  +N  P S+T  ++I     ++ L +A        R 
Sbjct: 448 AMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRT 507

Query: 317 LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
            LD    KN+   TA++  Y +   +  A ++FD +    V  WN MI GY   G    A
Sbjct: 508 CLD----KNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAA 563

Query: 377 INLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
           + LF +M    +  + VT+  +++  +    +++  + F  M K
Sbjct: 564 LELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKK 607



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 134/526 (25%), Positives = 234/526 (44%), Gaps = 104/526 (19%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ--- 74
           Q K ++   K G + EA ++F  +  K    Y++M+  YA+N  ++DA   F +M     
Sbjct: 112 QTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGV 171

Query: 75  RNLV-SWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARE 129
           R +V ++  ++     N  +++ +E+  ++    F  ++F+   ++  Y +   +E+A +
Sbjct: 172 RPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYK 231

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM-------PSKNIVS--------- 173
           +FD +P + D  CWN +++GYA+ G    A +L+  M        S  IVS         
Sbjct: 232 MFDRMPER-DLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVG 290

Query: 174 ---------WNSMLSG--------------YTKNGEMHLASKFFEAMEERDVVSWNLMLD 210
                      SM +G              Y+K G +  A   F+ M  + VVSWN M+D
Sbjct: 291 SLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMID 350

Query: 211 GYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEAR---RLFDQMPI-R 262
           GYV+  D  +A + FQK+ ++ V    V+ +  L   A  G + + R   +L DQ+ +  
Sbjct: 351 GYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGS 410

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
           +V   N++I+ Y +  +++ AA +F  +  +  VSW  MI GY +  +++EA     +M 
Sbjct: 411 DVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQ 470

Query: 323 YKNIAAQT----AMISGYVQNKRMDEANQI--------FDKIGTHDVVCWNVMIKGYAQC 370
            +NI   +    ++I    +   + +A  I         DK    +V     ++  YA+C
Sbjct: 471 LQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDK----NVFVATALVDMYAKC 526

Query: 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
           G +  A  LF  M  + + TWN MI GY               +GK              
Sbjct: 527 GAVHTARKLFDMMDERHVTTWNAMIDGYGT-----------HGLGKA------------- 562

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ 476
                   AL++F  M +E  K +  T  C LSAC+H   ++ G Q
Sbjct: 563 --------ALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQ 600



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 108/421 (25%), Positives = 195/421 (46%), Gaps = 41/421 (9%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF--RPD 107
            +++  Y+K G V  AR +F++M  + +VSWNSMI GY+ N     A E+F KM   + +
Sbjct: 315 TALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVE 374

Query: 108 LFSWALM--ITCYTRKGELEKAR---ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKL 162
           + +  +M  +      G++E+ R   +L D L    D +  N++++ Y+K    + A ++
Sbjct: 375 MTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEI 434

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDL 218
            + +  K +VSWN+M+ GY +NG ++ A  +F  M+    + D  +   ++    EL  L
Sbjct: 435 FENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVL 494

Query: 219 DSA-W---KFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
             A W      +   ++NV     ++  YA+ G +  AR+LFD M  R+V  WNAMI  Y
Sbjct: 495 PQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGY 554

Query: 275 VQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT 330
              G  + A  LF +M +     N V++  ++        ++E  +    M  K+   + 
Sbjct: 555 GTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMK-KDYGLEP 613

Query: 331 ------AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
                 AM+    +  R++EA     K+     +  +V       C R+ + + L  +  
Sbjct: 614 AMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAI--SVFGAMLGAC-RIHKNVELGEKAA 670

Query: 385 NK------DIVTWNTMIAG-YAQIRQMDDAVKIFEEMGKR--RNTVSWNALISGFLQNEF 435
           N+      D   ++ ++A  YA     D   ++   M K+  + T  W+ +    LQNE 
Sbjct: 671 NRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVE---LQNEV 727

Query: 436 H 436
           H
Sbjct: 728 H 728



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 161/373 (43%), Gaps = 66/373 (17%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S+V      +    K G V  A  IF +M+ K  V++NSMI  Y +NG    A ++F++M
Sbjct: 309 SFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKM 368

Query: 73  PQRNLVSWNSMIAGYLHN----DKVKEAR---ELFDKM-FRPDLFSWALMITCYTRKGEL 124
               +   N  + G LH       V++ R   +L D++    D+     +I+ Y++   +
Sbjct: 369 MDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRV 428

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKL---------------------- 162
           + A E+F+ L +K     WNAM+ GYA+ G  NEA                         
Sbjct: 429 DIAAEIFENLQHKT-LVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPA 487

Query: 163 ---LDAMP--------------SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW 205
              L  +P               KN+    +++  Y K G +H A K F+ M+ER V +W
Sbjct: 488 LAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTW 547

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARNGRMLEARRLFDQM-- 259
           N M+DGY       +A + F+K+ ++    N V+++ +LS  + +G + E  + F  M  
Sbjct: 548 NAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKK 607

Query: 260 -----PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDE- 313
                P  +   + AM+    +  ++ EA     +MP    +S    + G  RI K  E 
Sbjct: 608 DYGLEPAMD--HYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVEL 665

Query: 314 ----ARRLLDQMP 322
               A R+ D  P
Sbjct: 666 GEKAANRIFDLDP 678



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 131/271 (48%), Gaps = 23/271 (8%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS V   N  I+   K  RV+ A +IF  +  K  V++N+MI  YA+NGR+N+A   F +
Sbjct: 409 GSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCK 468

Query: 72  MPQRNL----VSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGE 123
           M  +N+     +  S+I        + +A+ +   + R     ++F    ++  Y + G 
Sbjct: 469 MQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGA 528

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSMLS 179
           +  AR+LFD++  +  T  WNAM+ GY   G    A +L + M  +    N V++  +LS
Sbjct: 529 VHTARKLFDMMDERHVTT-WNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLS 587

Query: 180 GYTKNGEMHLASKFFEAME-----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
             + +G +    ++F +M+     E  +  +  M+D     + L+ AW F QK+P +  +
Sbjct: 588 ACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAI 647

Query: 235 SWVTMLSGYARNGRMLE-----ARRLFDQMP 260
           S    + G  R  + +E     A R+FD  P
Sbjct: 648 SVFGAMLGACRIHKNVELGEKAANRIFDLDP 678


>gi|218186186|gb|EEC68613.1| hypothetical protein OsI_36980 [Oryza sativa Indica Group]
          Length = 981

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 224/753 (29%), Positives = 369/753 (49%), Gaps = 68/753 (9%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           N     +++  Y   G V+DAR+LF +MP+RN+VSW +++     N  ++E    + +M 
Sbjct: 78  NVYIGTALLHLYGSRGIVSDARRLFWEMPERNVVSWTALMVALSSNGYLEETLRAYRQMR 137

Query: 105 RPDLFSWA-LMITCYTRKGELEK--------ARELFDLLPNKEDTACWNAMVAGYAKIGN 155
           R  +   A    T  +  G LE         +  +   L N+   A  N+++  +  +G 
Sbjct: 138 REGVPCNANAFATVVSLCGSLENEVPGLQVASHVIVSGLQNQVSVA--NSLITMFGNLGR 195

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDG 211
             +A+KL D M   + +S N+M+S Y+  G        F  M       D  +   ++  
Sbjct: 196 VQDAEKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSV 255

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSG----YARNGRMLEARRLFDQMPIRNVVAW 267
               D               ++ S VT+++     Y+  G++ +A  LF  M  R++++W
Sbjct: 256 CASADHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISW 315

Query: 268 NAMIAAYVQRGQIEEA----ARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL----LD 319
           N MI++YVQ     +A     +LF      N +++++ +        L + + +    L 
Sbjct: 316 NTMISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACSSPGALIDGKMVHAIVLQ 375

Query: 320 QMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
               +N+    ++I+ Y +   M++A ++F  + THDVV +NV+I GYA      +A+ +
Sbjct: 376 LSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDVVSYNVLIGGYAVLEDGTKAMQV 435

Query: 380 FR------------QMVN----------------------------KDIVTWNTMIAGYA 399
           F              M+N                             D    N++I  YA
Sbjct: 436 FSWIRSAGIKPNYITMINIHGSFTSSNDLHNYGRPLHAYIIRTGFLSDEYVANSLITMYA 495

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
           +   ++ +  IF  +   +N VSWNA+I+   Q     +ALK+F+ M   G K D   LA
Sbjct: 496 KCGNLESSTNIFNSI-TNKNIVSWNAIIAANAQLGHGEEALKLFIDMQHAGNKLDRVCLA 554

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
             LS+CA LA+L+ G Q+H L +KSG  +D +V N+ + MY KCG++     +  D    
Sbjct: 555 ECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMNEMLQMVPDQAIR 614

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
               WN+LI+GYA  G   EA + F++MV  G  PD VTF+ +LSACSH GLVD G+  +
Sbjct: 615 PQQCWNTLISGYAKYGYFKEAEETFKQMVAMGRKPDYVTFVALLSACSHAGLVDKGIDYY 674

Query: 580 ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
             M   + + P ++H  C++DLL R GR  EA   ++ M + PN  IW +LL + R H+N
Sbjct: 675 NSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAERFIEEMPVLPNDLIWRSLLSSSRTHKN 734

Query: 640 IKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
           +++GR A +KL EL+P   S Y LLSN++A   RW +V+K+R  M+     K+P CSW++
Sbjct: 735 LEIGRKAAKKLLELDPFDDSAYVLLSNLYATNARWVDVDKLRSHMKTININKRPACSWLK 794

Query: 700 VKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +KN++ TF  GD       +I   L  +  ++R
Sbjct: 795 LKNEVSTFGIGDRGHKHAEKIYAKLDEMLLKLR 827



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/456 (25%), Positives = 187/456 (41%), Gaps = 123/456 (26%)

Query: 228 IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR------------------------- 262
           +P++   +W T +SG  R GR + A  L   M  R                         
Sbjct: 1   MPDRTPSTWYTAVSGCVRCGRDVAAFELLRGMRERGVPLSGFALASLVTACERRGRDEGI 60

Query: 263 -----------------NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGY 305
                            NV    A++  Y  RG + +A RLF EMPERN VSWT ++   
Sbjct: 61  ACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDARRLFWEMPERNVVSWTALMVAL 120

Query: 306 VRIAKLDEARRLLDQMPYKNI-------------------------AAQTAMISGYVQNK 340
                L+E  R   QM  + +                          A   ++SG +QN+
Sbjct: 121 SSNGYLEETLRAYRQMRREGVPCNANAFATVVSLCGSLENEVPGLQVASHVIVSG-LQNQ 179

Query: 341 ---------------RMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-- 383
                          R+ +A ++FD++  HD +  N MI  Y+  G   +   +F  M  
Sbjct: 180 VSVANSLITMFGNLGRVQDAEKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMRH 239

Query: 384 -------------------------------------VNKDIVTWNTMIAGYAQIRQMDD 406
                                                ++  +   N ++  Y+   ++ D
Sbjct: 240 HGLRPDATTLCSLMSVCASADHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSD 299

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
           A  +F  M  RR+ +SWN +IS ++QN    DALK    +    +  +H T + AL AC+
Sbjct: 300 AEFLFWNM-SRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACS 358

Query: 467 HLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNS 526
              AL  G+ +H + ++     +L VGNSLITMY KC  +++AE +F+     DV+S+N 
Sbjct: 359 SPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDVVSYNV 418

Query: 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
           LI GYA+  + T+A+++F  +   G+ P+ +T I +
Sbjct: 419 LIGGYAVLEDGTKAMQVFSWIRSAGIKPNYITMINI 454



 Score =  132 bits (332), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 120/499 (24%), Positives = 203/499 (40%), Gaps = 108/499 (21%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  IT  G  GRV++A K+F +M + +T++ N+MIS Y+  G  +    +F  M    L 
Sbjct: 184 NSLITMFGNLGRVQDAEKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMRHHGLR 243

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITC----YTRKGELEKAREL 130
               +  S+++     D       +     R  L S   +I      Y+  G+L  A  L
Sbjct: 244 PDATTLCSLMSVCASADHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFL 303

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL------DAMPS---------------- 168
           F  + ++ D   WN M++ Y +  N  +A K L      + +P+                
Sbjct: 304 FWNM-SRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACSSPGA 362

Query: 169 -----------------KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
                            +N++  NS+++ Y K   M  A K F++M   DVVS+N+++ G
Sbjct: 363 LIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDVVSYNVLIGG 422

Query: 212 YVELDDLDSAWKFFQKIPEQNV-VSWVTM------------------------------- 239
           Y  L+D   A + F  I    +  +++TM                               
Sbjct: 423 YAVLEDGTKAMQVFSWIRSAGIKPNYITMINIHGSFTSSNDLHNYGRPLHAYIIRTGFLS 482

Query: 240 --------LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
                   ++ YA+ G +  +  +F+ +  +N+V+WNA+IAA  Q G  EEA +LFI+M 
Sbjct: 483 DEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANAQLGHGEEALKLFIDMQ 542

Query: 292 ER----NPVSWTTMIDGYVRIAKLDEARRL--------LDQMPYKNIAAQTAMISGYVQN 339
                 + V     +     +A L+E  +L        LD   Y       A +  Y + 
Sbjct: 543 HAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSY----VVNAAMDMYGKC 598

Query: 340 KRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV----NKDIVTWNTMI 395
            +M+E  Q+          CWN +I GYA+ G   EA   F+QMV      D VT+  ++
Sbjct: 599 GKMNEMLQMVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVAMGRKPDYVTFVALL 658

Query: 396 AGYAQIRQMDDAVKIFEEM 414
           +  +    +D  +  +  M
Sbjct: 659 SACSHAGLVDKGIDYYNSM 677



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 144/328 (43%), Gaps = 41/328 (12%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR--- 75
           N  IT   K G +E +  IF+ ++ KN V++N++I+A A+ G   +A KLF  M      
Sbjct: 488 NSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANAQLGHGEEALKLFIDMQHAGNK 547

Query: 76  -NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMI-TCYTRKGELEKARELFDL 133
            + V     ++       ++E  +L     +  L S + ++       G+  K  E+  +
Sbjct: 548 LDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMNEMLQM 607

Query: 134 LPNK--EDTACWNAMVAGYAKIGNYNEAKKLLDAMPS----KNIVSWNSMLSGYTKNGEM 187
           +P++      CWN +++GYAK G + EA++    M +     + V++ ++LS  +  G +
Sbjct: 608 VPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVAMGRKPDYVTFVALLSACSHAGLV 667

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
                ++ +M     VS  +                       ++ V  V +L    R G
Sbjct: 668 DKGIDYYNSMASSFGVSPGI-----------------------KHCVCIVDLL---GRLG 701

Query: 248 RMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQIE---EAARLFIEMPERNPVSWTTMID 303
           R  EA R  ++MP+  N + W +++++      +E   +AA+  +E+   +  ++  + +
Sbjct: 702 RFAEAERFIEEMPVLPNDLIWRSLLSSSRTHKNLEIGRKAAKKLLELDPFDDSAYVLLSN 761

Query: 304 GYVRIAKLDEARRLLDQMPYKNIAAQTA 331
            Y   A+  +  +L   M   NI  + A
Sbjct: 762 LYATNARWVDVDKLRSHMKTININKRPA 789



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 124/305 (40%), Gaps = 51/305 (16%)

Query: 418 RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA---ALQLG 474
           R   +W   +SG ++    + A ++   M + G       LA  ++AC        +  G
Sbjct: 4   RTPSTWYTAVSGCVRCGRDVAAFELLRGMRERGVPLSGFALASLVTACERRGRDEGIACG 63

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
             IH L  ++G + ++++G +L+ +Y   G + +A  LF +    +V+SW +L+   + N
Sbjct: 64  AAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDARRLFWEMPERNVVSWTALMVALSSN 123

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC-------------SHV------------ 569
           G   E ++ + +M  EGV  +   F  V+S C             SHV            
Sbjct: 124 GYLEETLRAYRQMRREGVPCNANAFATVVSLCGSLENEVPGLQVASHVIVSGLQNQVSVA 183

Query: 570 ----------GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMK 619
                     G V    KLF+ M E   I         MI + S  G   + F +   M+
Sbjct: 184 NSLITMFGNLGRVQDAEKLFDRMEEHDTIS-----RNAMISMYSHQGICSKCFLVFSDMR 238

Query: 620 ---IKPNAGIWGTLLGACRMHQNIKLGRIAVEKL---SELEPQKTSCYALLSNMHAEAGR 673
              ++P+A    +L+  C    +   G   +  L   S L+   T   AL+ NM++ AG+
Sbjct: 239 HHGLRPDATTLCSLMSVCASADHFSHGS-GIHSLCLRSSLDSSVTVINALV-NMYSAAGK 296

Query: 674 WDEVE 678
             + E
Sbjct: 297 LSDAE 301


>gi|225432410|ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
           mitochondrial-like [Vitis vinifera]
          Length = 623

 Score =  345 bits (885), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 202/609 (33%), Positives = 311/609 (51%), Gaps = 27/609 (4%)

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDV 202
           +   AK+G    A++L D MP K+ V+WN+ML+ Y++ G    A   F  M       D 
Sbjct: 12  IVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANSRPDR 71

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV--------TMLSGYARNGRMLEARR 254
            ++   L     L +L        KI  Q VVS          +++  Y +      ARR
Sbjct: 72  FTFTATLSACAGLGELRRG----MKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSARR 127

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
           +F++M I N V+W +++ AY   G  + A  +F  MP++  ++W  MI GY +   ++  
Sbjct: 128 VFEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELC 187

Query: 315 RRLLDQMPYKNIAAQTAMISGYVQNK-RMDEANQIFDKIGTHDVVCW-------NVMIKG 366
             L  +M   ++       S  V     + E +  +   G      W       N ++  
Sbjct: 188 LGLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWVKAVEVSNSILSF 247

Query: 367 YAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNAL 426
           Y++ G  D+ + +F  +     V+WN MI  + +I    +A  +F+ +   +N VSW ++
Sbjct: 248 YSKLGCKDDVMKVFESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQ-LAPEKNVVSWTSM 306

Query: 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
           I+G+ +N     AL  FV M +   + D  T    L AC+ LA L  G+ IH   I  G+
Sbjct: 307 ITGYARNGHGEQALSFFVKMMENHIQPDDFTFGAVLHACSSLATLGHGKMIHGSIIHYGF 366

Query: 487 VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEE 546
              + VGN L+ MYAKCG IQ +   FK+    D++SWN+++ G  ++G+AT+A++L+EE
Sbjct: 367 HAYVDVGNGLVNMYAKCGDIQGSNTAFKEILGKDLVSWNAMLFGLGMHGHATQALELYEE 426

Query: 547 MVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAG 606
           MV  G+ PD VTFIG+L  CSH GL++ G  LFE M  VY +    EH  CM+DLL R G
Sbjct: 427 MVASGMKPDKVTFIGLLMTCSHSGLIEKGQALFESMVSVYGLSQETEHVVCMVDLLGRGG 486

Query: 607 RLDEAFEMVK--GMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALL 664
            L +A E+V       +    +   LLGAC  H  +++G    E L   EPQK   Y LL
Sbjct: 487 YLAQARELVDEYSRTGRAETSLPEALLGACFAHSEVRMGANLGEYLKVFEPQKEMSYVLL 546

Query: 665 SNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTL 724
           SN++  +G+W E E VR +M   G +K PGCSWIEV+N++  F++G+       E+C  L
Sbjct: 547 SNLYCVSGQWKEAEMVRKTMTDHGVKKMPGCSWIEVRNKVTVFVAGNHSHPYMEELCKIL 606

Query: 725 KTLAAQIRN 733
             L  ++RN
Sbjct: 607 NFLKFEMRN 615



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 117/488 (23%), Positives = 197/488 (40%), Gaps = 114/488 (23%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S++F    KI  L K GR+  A ++F +M  K+TV +N+M+++Y++ G    A  LF  M
Sbjct: 3   SHLFQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHM 62

Query: 73  ------PQR---------------------------------NLVSWNSMIAGYLHNDKV 93
                 P R                                 +L   NS+I  Y      
Sbjct: 63  RIANSRPDRFTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSA 122

Query: 94  KEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKI 153
             AR +F++M   +  SW  ++  YT  G  + AR +FD +P K + A WN M++GY + 
Sbjct: 123 TSARRVFEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIA-WNIMISGYGQC 181

Query: 154 GNYNEAKKLLDAM------------------------PS---------------KNIVSW 174
           G+      L   M                        PS               K +   
Sbjct: 182 GDVELCLGLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWVKAVEVS 241

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
           NS+LS Y+K G      K FE++     VSWN M+D ++++ D   A+  FQ  PE+NVV
Sbjct: 242 NSILSFYSKLGCKDDVMKVFESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVV 301

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
           SW +M++GYARNG   +A   F +M   ++                           + +
Sbjct: 302 SWTSMITGYARNGHGEQALSFFVKMMENHI---------------------------QPD 334

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFD 350
             ++  ++     +A L   + +   + +    A       +++ Y +   +  +N  F 
Sbjct: 335 DFTFGAVLHACSSLATLGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQGSNTAFK 394

Query: 351 KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV----NKDIVTWNTMIAGYAQIRQMDD 406
           +I   D+V WN M+ G    G   +A+ L+ +MV      D VT+  ++   +    ++ 
Sbjct: 395 EILGKDLVSWNAMLFGLGMHGHATQALELYEEMVASGMKPDKVTFIGLLMTCSHSGLIEK 454

Query: 407 AVKIFEEM 414
              +FE M
Sbjct: 455 GQALFESM 462



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 96/447 (21%), Positives = 169/447 (37%), Gaps = 110/447 (24%)

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
           + ++   T+ I    +  R+  A ++FD++   D V WN M+  Y+Q G   +A+ LF  
Sbjct: 2   HSHLFQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHH 61

Query: 383 M---------------------------------------VNKDIVTWNTMIAGYAQIRQ 403
           M                                           +   N++I  Y +   
Sbjct: 62  MRIANSRPDRFTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLS 121

Query: 404 MDDAVKIFEEMG------------------------------KRRNTVSWNALISGFLQN 433
              A ++FEEM                                ++  ++WN +ISG+ Q 
Sbjct: 122 ATSARRVFEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQC 181

Query: 434 EFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG 493
                 L +F  M ++  + D  T +  ++A   L     G  +H   IKSG+V  + V 
Sbjct: 182 GDVELCLGLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWVKAVEVS 241

Query: 494 NSLITMYA-------------------------------KCGRIQNAELLFKDADPVDVI 522
           NS+++ Y+                               K G    A L+F+ A   +V+
Sbjct: 242 NSILSFYSKLGCKDDVMKVFESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVV 301

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           SW S+I GYA NG+  +A+  F +M+   + PD  TF  VL ACS +  +  G K+    
Sbjct: 302 SWTSMITGYARNGHGEQALSFFVKMMENHIQPDDFTFGAVLHACSSLATLGHG-KMIHGS 360

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRL---DEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
              Y     V+    ++++ ++ G +   + AF+ + G  +      W  +L    MH +
Sbjct: 361 IIHYGFHAYVDVGNGLVNMYAKCGDIQGSNTAFKEILGKDLVS----WNAMLFGLGMHGH 416

Query: 640 IKLGRIAVEKL--SELEPQKTSCYALL 664
                   E++  S ++P K +   LL
Sbjct: 417 ATQALELYEEMVASGMKPDKVTFIGLL 443



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 122/261 (46%), Gaps = 26/261 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  ++   K G  ++ +K+F  +     V++N+MI A+ K G  ++A  +F+  P++N+V
Sbjct: 242 NSILSFYSKLGCKDDVMKVFESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVV 301

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLL 134
           SW SMI GY  N   ++A   F KM     +PD F++  ++   +    L   + +   +
Sbjct: 302 SWTSMITGYARNGHGEQALSFFVKMMENHIQPDDFTFGAVLHACSSLATLGHGKMIHGSI 361

Query: 135 PNKEDTA---CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
            +    A     N +V  YAK G+   +      +  K++VSWN+ML G   +G    A 
Sbjct: 362 IHYGFHAYVDVGNGLVNMYAKCGDIQGSNTAFKEILGKDLVSWNAMLFGLGMHGHATQAL 421

Query: 192 KFFEAM----EERDVVSW----------NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV 237
           + +E M     + D V++           L+  G    + + S +   Q+   ++VV  V
Sbjct: 422 ELYEEMVASGMKPDKVTFIGLLMTCSHSGLIEKGQALFESMVSVYGLSQET--EHVVCMV 479

Query: 238 TMLSGYARNGRMLEARRLFDQ 258
            +L    R G + +AR L D+
Sbjct: 480 DLL---GRGGYLAQARELVDE 497


>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 600

 Score =  345 bits (885), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 178/540 (32%), Positives = 305/540 (56%), Gaps = 9/540 (1%)

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV--TMLSGYARNGRMLEARRLFDQ 258
           D V+ + +L  Y     L ++   F   P  +  +++  T+L  YA N    EA  +F  
Sbjct: 55  DPVAASKLLSSYALHRRLPASRGVFASFPNPHATTFLPNTLLRAYALNALPREAVAVFSA 114

Query: 259 MPIRNVVAWNAMIAAYVQRG--QIEEAARLFIEMPE-RNPVSWTTMIDGYVRIAKLDEAR 315
           MP R+   ++ +I A    G   +       +++    +      +ID Y +     +A 
Sbjct: 115 MPHRDSFTYSFLIKALSSAGVAPLRAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFSDAS 174

Query: 316 RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
           ++ ++MP +++ +  + ++  V+   ++ A ++FD++   D V WN ++ GY + G ++E
Sbjct: 175 KVFEEMPRRDVVSWNSAMAAMVRQGEVEGARRMFDEMLEKDTVSWNTLLDGYTKAGDVEE 234

Query: 376 AINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEF 435
           A  LF+ M  +++V+W+T+++GY +   M+ A  IF++M   +N V+W  ++S   QN  
Sbjct: 235 AFKLFQCMPERNVVSWSTVVSGYCKKGDMEMARVIFDKM-PTKNLVTWTIMVSACAQNGL 293

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS 495
             +A K+F  M +   + D + +   L+ACA   +L LG++IH             V N+
Sbjct: 294 VEEAGKLFTQMKEASVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNA 353

Query: 496 LITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA 553
           LI M+ KCG I  A+ +F D + V  D +SWN++I G+A++G+  +A+  F +M ++G  
Sbjct: 354 LIDMFCKCGCINRADYVF-DTEIVEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFC 412

Query: 554 PDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFE 613
           PD VT I VLSAC+H+G V+ G + F  M   Y + P +EHY CMIDLL R G + EA +
Sbjct: 413 PDAVTMINVLSACTHMGFVEEGRRYFANMERDYGVVPQIEHYGCMIDLLGRGGLIKEAVD 472

Query: 614 MVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGR 673
           ++K M   PN  IWG+LL ACR+H+N++   IAV +LS+L+P     YA+LS+++AEAG+
Sbjct: 473 LIKSMPWDPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSSIYAEAGK 532

Query: 674 WDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           W ++ K R+ M+G+G+QK  G SWIE+    H F  GD K   + +I   +  L++  ++
Sbjct: 533 WSDMAKARMQMKGTGSQKSSGSSWIELDEAFHEFTVGDRKHPDSDQISEMVDRLSSHAKD 592



 Score =  221 bits (564), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 150/504 (29%), Positives = 246/504 (48%), Gaps = 64/504 (12%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSW--NSMIAGYLHNDKVKEARELFDK 102
           + V  + ++S+YA + R+  +R +F   P  +  ++  N+++  Y  N   +EA  +F  
Sbjct: 55  DPVAASKLLSSYALHRRLPASRGVFASFPNPHATTFLPNTLLRAYALNALPREAVAVFSA 114

Query: 103 MFRPDLFSWALMITCYTRKG--ELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
           M   D F+++ +I   +  G   L         L + EDT   NA++  Y+K G +++A 
Sbjct: 115 MPHRDSFTYSFLIKALSSAGVAPLRAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFSDAS 174

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
           K+ + MP +++VSWNS ++   + GE+  A + F+ M E+D VSWN +LDGY +  D++ 
Sbjct: 175 KVFEEMPRRDVVSWNSAMAAMVRQGEVEGARRMFDEMLEKDTVSWNTLLDGYTKAGDVEE 234

Query: 221 AWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQI 280
           A+K FQ +PE+NVVSW T++SGY + G M  AR +FD+MP +N+V W  M++A  Q G +
Sbjct: 235 AFKLFQCMPERNVVSWSTVVSGYCKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQNGLV 294

Query: 281 EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340
           EEA +LF +M                      EA   LD     +I A  A        K
Sbjct: 295 EEAGKLFTQM---------------------KEASVELDVAAVVSILAACAESGSLALGK 333

Query: 341 RMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF-RQMVNKDIVTWNTMIAGYA 399
           R+    +   ++G    VC N +I  + +CG ++ A  +F  ++V KD V+WNT+I G+A
Sbjct: 334 RIHRYVRT-RQLGRSTHVC-NALIDMFCKCGCINRADYVFDTEIVEKDSVSWNTIIGGFA 391

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
                D A+  F +M            + GF                       D  T+ 
Sbjct: 392 MHGHGDKALDFFAQMK-----------LQGFC---------------------PDAVTMI 419

Query: 460 CALSACAHLAALQLGRQ-IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA-- 516
             LSAC H+  ++ GR+   ++    G V  +     +I +  + G I+ A  L K    
Sbjct: 420 NVLSACTHMGFVEEGRRYFANMERDYGVVPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPW 479

Query: 517 DPVDVISWNSLIAGYAINGNATEA 540
           DP +VI W SL++   ++ N   A
Sbjct: 480 DPNEVI-WGSLLSACRLHKNVEYA 502



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/445 (26%), Positives = 203/445 (45%), Gaps = 77/445 (17%)

Query: 2   KASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTY------------ 49
           +    S  N  +  F  N  +     +    EA+ +FS M  +++ TY            
Sbjct: 76  RGVFASFPNPHATTFLPNTLLRAYALNALPREAVAVFSAMPHRDSFTYSFLIKALSSAGV 135

Query: 50  ----------------------NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGY 87
                                 N++I AY+KNG  +DA K+FE+MP+R++VSWNS +A  
Sbjct: 136 APLRAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFSDASKVFEEMPRRDVVSWNSAMAAM 195

Query: 88  LHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMV 147
           +   +V+ AR +FD+M   D  SW  ++  YT+ G++E+A +LF  +P + +   W+ +V
Sbjct: 196 VRQGEVEGARRMFDEMLEKDTVSWNTLLDGYTKAGDVEEAFKLFQCMPER-NVVSWSTVV 254

Query: 148 AGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL 207
           +GY K G+   A+ + D MP+KN+V+W  M+S   +NG +  A K F  M+E        
Sbjct: 255 SGYCKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGKLFTQMKE-------- 306

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI----RN 263
                VELD                V + V++L+  A +G +   +R+   +      R+
Sbjct: 307 ---ASVELD----------------VAAVVSILAACAESGSLALGKRIHRYVRTRQLGRS 347

Query: 264 VVAWNAMIAAYVQRGQIEEAARLF-IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
               NA+I  + + G I  A  +F  E+ E++ VSW T+I G+      D+A     QM 
Sbjct: 348 THVCNALIDMFCKCGCINRADYVFDTEIVEKDSVSWNTIIGGFAMHGHGDKALDFFAQMK 407

Query: 323 YKNIAAQ-TAMIS--------GYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRM 373
            +        MI+        G+V+  R   AN   D      +  +  MI    + G +
Sbjct: 408 LQGFCPDAVTMINVLSACTHMGFVEEGRRYFANMERDYGVVPQIEHYGCMIDLLGRGGLI 467

Query: 374 DEAINLFRQMV-NKDIVTWNTMIAG 397
            EA++L + M  + + V W ++++ 
Sbjct: 468 KEAVDLIKSMPWDPNEVIWGSLLSA 492


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  345 bits (885), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 213/722 (29%), Positives = 360/722 (49%), Gaps = 95/722 (13%)

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           F+P +F    +I  Y +  +L  A ++FD +P + DT  WNAM+ GYA  G+   A+KL 
Sbjct: 73  FKPTVFVTNCLIQMYIKCSDLGFAFKVFDGMPQR-DTVSWNAMLFGYAGRGDIGVAQKLF 131

Query: 164 DAMPSKNI-----------------------VSWNSMLSGYTKNGEMHLASKFFEAMEER 200
           DAMP                           V   S  S     G + +     +   + 
Sbjct: 132 DAMPGTGCGVVELFDFRMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDC 191

Query: 201 DVVSWNLMLDGY----VELDDLDSAWKFFQKIPE------------------QNVVSWVT 238
           DVV+ + +LD Y    V+ DDL    + F+++ +                   +VV    
Sbjct: 192 DVVTGSALLDMYAKCCVQNDDLRGGLELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTA 251

Query: 239 MLSGYARNGRMLE-ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
            L  Y +   + + + +LF+ +P  N+ ++NA+I  Y +  +  EA  +F  + +     
Sbjct: 252 TLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGL 311

Query: 298 WTTMIDGYVR--------IAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF 349
               + G  R        +  L      +  +   NI    A++  Y +   + EA  +F
Sbjct: 312 DEVSLSGAXRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVF 371

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN--------------KDIVTWNTMI 395
           +++ + D V WN +I  + Q G  ++ ++LF  M+               K    W  + 
Sbjct: 372 EEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALN 431

Query: 396 AG-------------------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
            G                         Y++   M+ A K+ + + ++   VSWNA+ISGF
Sbjct: 432 CGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQ-TVVSWNAIISGF 490

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
              +   +A K F  M + G   D+ T A  L  CA+L  ++LG+QIH   IK    +D 
Sbjct: 491 SLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDA 550

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME 550
           ++ ++L+ MY+KCG +Q+ +L+F+ A   D ++WN+++ GYA +G   EA+K+FE M +E
Sbjct: 551 YISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLE 610

Query: 551 GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDE 610
            V P+  TF+ VL AC H+GLV+ GL  F  M   Y ++P +EHY+C++D++ R+G++ +
Sbjct: 611 NVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSK 670

Query: 611 AFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAE 670
           A E+++GM  + +A IW TLL  C++H N+++   A   + +LEP+ ++ Y LLSN++A 
Sbjct: 671 ALELIEGMPFEADAVIWRTLLSXCKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYAN 730

Query: 671 AGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQ 730
           AG W+EV K+R  M  +G +K+PGCSWIE+K+++H FL GD    R+ EI   L  L  +
Sbjct: 731 AGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEIYENLDVLTDE 790

Query: 731 IR 732
           ++
Sbjct: 791 MK 792



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/426 (24%), Positives = 186/426 (43%), Gaps = 79/426 (18%)

Query: 247 GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYV 306
           G+   AR +  +     V   N +I  Y++   +  A ++F  MP+R+ VSW  M+ GY 
Sbjct: 61  GKQAHARMILTEFK-PTVFVTNCLIQMYIKCSDLGFAFKVFDGMPQRDTVSWNAMLFGYA 119

Query: 307 RIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ--NKRMDEANQIFDK------------- 351
               +  A++L D MP            G V+  + RM     +FD+             
Sbjct: 120 GRGDIGVAQKLFDAMPGTG--------CGVVELFDFRMGRMGTVFDRTTFAVVLKSCSSL 171

Query: 352 ------IGTH----------DVVCWNVMIKGYAQCGRMDE----AINLFRQM-------- 383
                 I  H          DVV  + ++  YA+C   ++     + LF++M        
Sbjct: 172 EDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKEMQKAGVGAL 231

Query: 384 ----------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433
                        D+V     +  Y +   + D            N  S+NA+I G+ ++
Sbjct: 232 QLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARS 291

Query: 434 EFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG 493
           +  ++AL +F L+ + G   D  +L+ A  ACA +     G Q+H L++KS   +++ V 
Sbjct: 292 DKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSLCQSNICVA 351

Query: 494 NSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA 553
           N+++ MY KCG +  A L+F++    D +SWN++IA +  NGN  + + LF  M+  G+ 
Sbjct: 352 NAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGME 411

Query: 554 PDPVTFIGVLSACSHVGLVDGGLKLFECMTEVY--------AIEPLVEHYACMIDLLSRA 605
           PD  T+  VL AC+       G +   C  E++         ++  V     +ID+ S+ 
Sbjct: 412 PDEFTYGSVLKACA-------GWQALNCGMEIHNRIIKSRMGLDSFVG--IALIDMYSKC 462

Query: 606 GRLDEA 611
           G +++A
Sbjct: 463 GMMEKA 468



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 143/661 (21%), Positives = 259/661 (39%), Gaps = 165/661 (24%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  N  I    K   +  A K+F  M Q++TV++N+M+  YA  G +  A+KLF+ MP 
Sbjct: 77  VFVTNCLIQMYIKCSDLGFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPG 136

Query: 75  RN-----LVSWNSMIAGYLHNDK-----VKEARELFD------------KM-FRPDLFSW 111
                  L  +     G + +       +K    L D            KM F  D+ + 
Sbjct: 137 TGCGVVELFDFRMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTG 196

Query: 112 ALMI----TCYTRKGELEKARELFDLLPNK-----------------EDTACWNAMVAGY 150
           + ++     C  +  +L    ELF  +                     D     A +  Y
Sbjct: 197 SALLDMYAKCCVQNDDLRGGLELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMY 256

Query: 151 AKIGNYNE-AKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML 209
            K  N ++ + +L +++P+ N+ S+N+++ GY ++ +   A   F  +++  +    + L
Sbjct: 257 MKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSL 316

Query: 210 DGYV--------ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
            G          +L+ L       + + + N+     +L  Y + G ++EA  +F++M  
Sbjct: 317 SGAXRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVS 376

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWT-------------------- 299
           R+ V+WNA+IAA+ Q G  E+   LF+ M +    P  +T                    
Sbjct: 377 RDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEI 436

Query: 300 -----------------TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRM 342
                             +ID Y +   +++A +L D++  + + +  A+ISG+   K+ 
Sbjct: 437 HNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQS 496

Query: 343 DEANQIFDKIGTHDV------------VCWNV---------------------------M 363
           +EA + F K+    V             C N+                           +
Sbjct: 497 EEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTL 556

Query: 364 IKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
           +  Y++CG M +   +F +  N+D VTWN M+ GYAQ    ++A+KIFE           
Sbjct: 557 VDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFE----------- 605

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
                                 M  E  K +H+T    L AC H+  ++ G    H  + 
Sbjct: 606 ---------------------YMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLS 644

Query: 484 S-GYVNDLFVGNSLITMYAKCGRIQNA-ELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
           + G    L   + ++ +  + G++  A EL+       D + W +L++   I+GN   A 
Sbjct: 645 NYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSXCKIHGNVEVAE 704

Query: 542 K 542
           K
Sbjct: 705 K 705



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 144/298 (48%), Gaps = 24/298 (8%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----P 106
           ++I  Y+K G +  A KL +++ ++ +VSWN++I+G+    + +EA++ F KM      P
Sbjct: 454 ALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDP 513

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLL 163
           D F++A ++        +E  +++   +  KE   D    + +V  Y+K GN  + + + 
Sbjct: 514 DNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIF 573

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLD 219
           +  P+++ V+WN+M+ GY ++G    A K FE M+  +V     ++  +L     +  ++
Sbjct: 574 EKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVE 633

Query: 220 SAWKFFQKI-------PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMI 271
               +F  +       P+    S V  + G  R+G++ +A  L + MP   + V W  ++
Sbjct: 634 KGLHYFHSMLSNYGLDPQLEHYSCVVDIMG--RSGQVSKALELIEGMPFEADAVIWRTLL 691

Query: 272 AAYVQRGQI---EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
           +     G +   E+AA   +++   +  ++  + + Y      +E  +L   M +  +
Sbjct: 692 SXCKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGL 749



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 89/210 (42%), Gaps = 26/210 (12%)

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
            Q++     L I    + +       T +     C+   AL  G+Q H   I + +   +
Sbjct: 18  FQSKSPFKTLPISPFSSYQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTV 77

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEM--- 547
           FV N LI MY KC  +  A  +F      D +SWN+++ GYA  G+   A KLF+ M   
Sbjct: 78  FVTNCLIQMYIKCSDLGFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGT 137

Query: 548 ---VME---------GVAPDPVTFIGVLSACSHVGLVDGGLKL--------FECMTEVYA 587
              V+E         G   D  TF  VL +CS +    GG+++        F+C  +V  
Sbjct: 138 GCGVVELFDFRMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDC--DVVT 195

Query: 588 IEPLVEHYA-CMIDLLSRAGRLDEAFEMVK 616
              L++ YA C +      G L+   EM K
Sbjct: 196 GSALLDMYAKCCVQNDDLRGGLELFKEMQK 225



 Score = 42.7 bits (99), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 88/224 (39%), Gaps = 30/224 (13%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMS----QKNTVTYNSMISAYAKNGRVNDARKLFEQM-- 72
           N  +    + G  EEA+KIF  M     + N  T+ +++ A    G V      F  M  
Sbjct: 585 NAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLS 644

Query: 73  -----PQRNLVSWNSMIAGYLHNDKVKEARELFDKM-FRPDLFSWALMITCYTRKGELEK 126
                PQ    S    I G   + +V +A EL + M F  D   W  +++     G +E 
Sbjct: 645 NYGLDPQLEHYSCVVDIMG--RSGQVSKALELIEGMPFEADAVIWRTLLSXCKIHGNVEV 702

Query: 127 ARE----LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM--------PSKNIVSW 174
           A +    +  L P  ED+A +  +   YA  G +NE  KL   M        P  + +  
Sbjct: 703 AEKAAYSILQLEP--EDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEI 760

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDL 218
            S +  +    + H  SK  E  E  DV++  +   GY+   D 
Sbjct: 761 KSEVHAFLVGDKAHPRSK--EIYENLDVLTDEMKWVGYMPDTDF 802


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  345 bits (885), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 225/718 (31%), Positives = 349/718 (48%), Gaps = 79/718 (11%)

Query: 64  DARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGE 123
           DARKL   +  R  V+  S+  G + + KV           + D++    +I+ Y     
Sbjct: 2   DARKLIPLL--RASVNSKSLKQGKVLHQKVVTLG------LQNDVYVCKNLISLYVSCNL 53

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK 183
            + A+ +FD++ N  + +  N ++AGY +   Y+EA  L D +     +  +S       
Sbjct: 54  FDYAKNVFDVIENPFEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVL 113

Query: 184 NGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGY 243
                L       M    +V   LM+D                      +V   +++  Y
Sbjct: 114 KACGGLRRVVLGQMIHTCLVKEGLMVD----------------------IVVGSSLVGMY 151

Query: 244 ARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWT 299
           A+      A +LFD+MP ++V  WN +I+ Y Q G+ EEA R F  M     E + V+ T
Sbjct: 152 AKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTIT 211

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFDKIGTH 355
           T I    R+  LD  R +  ++        +    A++  Y +  +++ A ++F+++   
Sbjct: 212 TAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNK 271

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQM-------------------------------- 383
            VV WN MI GY   G     I LF++M                                
Sbjct: 272 TVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVH 331

Query: 384 -------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
                  +  DI   ++++  Y +  +++ A  IF+ M K   TVSWN +ISG++     
Sbjct: 332 GYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKT-TTVSWNVMISGYVTEGKL 390

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSL 496
            DAL++F  M++   + D  T    L+AC+ LAAL+ GR+IH+L ++    N+  V  +L
Sbjct: 391 FDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVERNLGNNEVVMGAL 450

Query: 497 ITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
           + MYAKCG ++ A  +FK     D++SW S+I  Y  +G   EA++LF EM+   V PD 
Sbjct: 451 LDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHGRVYEALELFAEMLQSNVKPDR 510

Query: 557 VTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVK 616
           VTF+ +LSACSH GLVD GL  F  M  VY I P +EHY+C+I LL RAGRL EA+E+++
Sbjct: 511 VTFLAILSACSHAGLVDDGLYHFNQMINVYGIIPRIEHYSCLITLLGRAGRLHEAYEILQ 570

Query: 617 G-MKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWD 675
              +I  +  +  TL  ACR+H+N+ LG    E L + +P  +S Y +LSNM+A  G+WD
Sbjct: 571 SNPEISDDFQLLSTLFSACRLHKNLDLGVEIAENLIDKDPDDSSTYIILSNMYASFGKWD 630

Query: 676 EVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           EV  VR  M+  G +K PGCSWIE+  +I  F   D        I N L  L + + +
Sbjct: 631 EVRMVRSKMKDLGLKKNPGCSWIEINEKIVPFFVEDNSHYHLEGIGNILSYLTSHMED 688



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 193/389 (49%), Gaps = 31/389 (7%)

Query: 26  GKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM------PQR-NLV 78
            K    E A+K+F +M  K+   +N++IS Y ++G+  +A + F  M      P    + 
Sbjct: 152 AKCNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTIT 211

Query: 79  SWNSMIAGYLHNDKVKEA-RELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
           +  S  A  L  D+ +E  +EL +  FR D F  A ++  Y + G+LE A E+F+ +PNK
Sbjct: 212 TAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNK 271

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASKF 193
              A WN+M+ GY   G+     +L   M S+ +     +  S L   +++ ++ L  KF
Sbjct: 272 TVVA-WNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQL-LEGKF 329

Query: 194 FEAMEERDVVSWNLML-----DGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGR 248
                 R+ +  ++ L     D Y +   ++SA   F+ +P+   VSW  M+SGY   G+
Sbjct: 330 VHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGK 389

Query: 249 MLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTT 300
           + +A RLF +M    V    + + +++AA  Q   +E+   +   + ER    N V    
Sbjct: 390 LFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVERNLGNNEVVMGA 449

Query: 301 MIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV--- 357
           ++D Y +   ++EA  +   +P +++ + T+MI+ Y  + R+ EA ++F ++   +V   
Sbjct: 450 LLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHGRVYEALELFAEMLQSNVKPD 509

Query: 358 -VCWNVMIKGYAQCGRMDEAINLFRQMVN 385
            V +  ++   +  G +D+ +  F QM+N
Sbjct: 510 RVTFLAILSACSHAGLVDDGLYHFNQMIN 538



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 135/591 (22%), Positives = 239/591 (40%), Gaps = 149/591 (25%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSW-NSMIA 85
           K G+V    K+ +   Q +     ++IS Y      + A+ +F+ +     +S  N ++A
Sbjct: 20  KQGKVLHQ-KVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFDVIENPFEISLCNGLMA 78

Query: 86  GYLHNDKVKEARELFDKM-----FRPDLFSWA----------------LMITCYTRKG-- 122
           GY  N    EA  LFDK+      +PD +++                 ++ TC  ++G  
Sbjct: 79  GYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVVLGQMIHTCLVKEGLM 138

Query: 123 -----------------ELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA------ 159
                            E E A +LFD +P+K D ACWN +++ Y + G + EA      
Sbjct: 139 VDIVVGSSLVGMYAKCNEFECAVKLFDEMPDK-DVACWNTVISCYYQSGKFEEALRYFGM 197

Query: 160 --------------------KKLLDAMPSKNI--------VSWNSMLSG-----YTKNGE 186
                                +LLD    + I           +S +S      Y K G+
Sbjct: 198 MRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQ 257

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV--------- 237
           + +A + FE M  + VV+WN M++GY    D  S  + F+++  + V   +         
Sbjct: 258 LEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMA 317

Query: 238 ------------------------------TMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
                                         +++  Y + G++  A  +F  MP    V+W
Sbjct: 318 CSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSW 377

Query: 268 NAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
           N MI+ YV  G++ +A RLF EM     E + +++T+++    ++A L++ R + + +  
Sbjct: 378 NVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVE 437

Query: 324 KNIA----AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
           +N+        A++  Y +   ++EA  +F  +   D+V W  MI  Y   GR+ EA+ L
Sbjct: 438 RNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHGRVYEALEL 497

Query: 380 FRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM----GKRRNTVSWNALIS--- 428
           F +M    V  D VT+  +++  +    +DD +  F +M    G       ++ LI+   
Sbjct: 498 FAEMLQSNVKPDRVTFLAILSACSHAGLVDDGLYHFNQMINVYGIIPRIEHYSCLITLLG 557

Query: 429 --GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI 477
             G L   +        +L +      D   L+   SAC     L LG +I
Sbjct: 558 RAGRLHEAYE-------ILQSNPEISDDFQLLSTLFSACRLHKNLDLGVEI 601



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 180/387 (46%), Gaps = 35/387 (9%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM------PQR 75
           +   GK G++E AI++F QM  K  V +NSMI+ Y   G      +LF++M      P  
Sbjct: 249 VDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTL 308

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELF 131
             ++   M      + ++ E + +   + R    PD+F  + ++  Y + G++E A  +F
Sbjct: 309 TTLTSTLMACS--QSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIF 366

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEM 187
            L+P K  T  WN M++GY   G   +A +L   M    +    +++ S+L+  ++   +
Sbjct: 367 KLMP-KTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLAAL 425

Query: 188 HLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGY 243
               +    + ER++    V    +LD Y +   ++ A+  F+ +PE+++VSW +M++ Y
Sbjct: 426 EKGREIHNLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAY 485

Query: 244 ARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPV--- 296
             +GR+ EA  LF +M   NV    V + A+++A    G +++    F +M     +   
Sbjct: 486 GSHGRVYEALELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDGLYHFNQMINVYGIIPR 545

Query: 297 --SWTTMIDGYVRIAKLDEARRLLDQMP--YKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
              ++ +I    R  +L EA  +L   P    +    + + S    +K +D   +I + +
Sbjct: 546 IEHYSCLITLLGRAGRLHEAYEILQSNPEISDDFQLLSTLFSACRLHKNLDLGVEIAENL 605

Query: 353 ---GTHDVVCWNVMIKGYAQCGRMDEA 376
                 D   + ++   YA  G+ DE 
Sbjct: 606 IDKDPDDSSTYIILSNMYASFGKWDEV 632



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 144/303 (47%), Gaps = 27/303 (8%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           Q +    +S++  Y K G+V  A  +F+ MP+   VSWN MI+GY+   K+ +A  LF +
Sbjct: 340 QPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGE 399

Query: 103 MFR----PDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGN 155
           M +    PD  ++  ++   ++   LEK RE+ +L+  +    +     A++  YAK G 
Sbjct: 400 MSKSFVEPDAITFTSVLAACSQLAALEKGREIHNLIVERNLGNNEVVMGALLDMYAKCGA 459

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDG 211
             EA  +   +P +++VSW SM++ Y  +G ++ A + F  M + +V    V++  +L  
Sbjct: 460 VEEAFGVFKCLPERDLVSWTSMITAYGSHGRVYEALELFAEMLQSNVKPDRVTFLAILSA 519

Query: 212 --YVELDDLDSAWKFFQKIPEQNVVS----WVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
             +  L D D  + F Q I    ++     +  +++   R GR+ EA  +    P   + 
Sbjct: 520 CSHAGLVD-DGLYHFNQMINVYGIIPRIEHYSCLITLLGRAGRLHEAYEILQSNP--EIS 576

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPE----RNPVSWTTMI---DGYVRIAKLDEARRLL 318
               +++      ++ +   L +E+ E    ++P   +T I   + Y    K DE R + 
Sbjct: 577 DDFQLLSTLFSACRLHKNLDLGVEIAENLIDKDPDDSSTYIILSNMYASFGKWDEVRMVR 636

Query: 319 DQM 321
            +M
Sbjct: 637 SKM 639


>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
          Length = 617

 Score =  345 bits (885), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 176/461 (38%), Positives = 277/461 (60%), Gaps = 11/461 (2%)

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP--YKN 325
           N +I  Y++ G +  A ++F  MP+R+ VS+ +MIDGYV+    + AR L D MP   KN
Sbjct: 164 NCLIGLYLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSTESARELFDLMPEEMKN 223

Query: 326 IAAQTAMISGYVQNKR-MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
           + +  +MISGY Q    +D A+++F ++   D++ WN MI GY + GR+++A  LF  M 
Sbjct: 224 LISWNSMISGYAQTSDGVDIASKLFSEMPDKDLISWNSMIDGYVKHGRIEDAKYLFDVMP 283

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
            +D+VTW+TMI GYA++  +  A  +F++M   R+ VS+N++I+G++QN ++++AL+IF 
Sbjct: 284 RRDVVTWSTMIDGYAKLGFVHQAKTLFDQM-PHRDVVSYNSMIAGYVQNRYNMEALEIFS 342

Query: 445 LMTQEGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
            M +E     D +TL   LSA A L  L     +H   ++  +     +G +LI MY+KC
Sbjct: 343 DMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYSKC 402

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
           G IQ+A L+FK  +   +  WN++I G AI+G    A  +  ++    + PD +TF+G+L
Sbjct: 403 GSIQHAMLVFKGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGLL 462

Query: 564 SACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPN 623
           +ACSH GLV  GL  FE M   + IEP ++HY CM+D+LSR+G ++ A  +++ M I+PN
Sbjct: 463 NACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPN 522

Query: 624 AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVS 683
             IW T L AC  H+  + G +  + L        S Y LLSN++A  G+W +V ++R  
Sbjct: 523 DVIWRTFLAACNHHKEFETGELVAKHLIWEAGYNPSSYVLLSNLYASFGKWKDVRRIRTI 582

Query: 684 MEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTL 724
           M+    +K PGCSWIE+  ++H F         + E+ NTL
Sbjct: 583 MKERKIEKVPGCSWIELDGRVHEFF------VDSIEVSNTL 617



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 147/551 (26%), Positives = 270/551 (49%), Gaps = 78/551 (14%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQ----KNTVTYNSMISAYAKNGR---VNDARKLFEQMPQ 74
           I  LG     E+  KI +++      KN      ++ A+A + R   V  AR +F +   
Sbjct: 18  IKLLGSCKNSEDVNKIHARLVTNGFIKNPNLTTRIVLAFAASRRPYXVEFARFVFHEYXI 77

Query: 75  RNLVS----------WNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTR 120
           R+             WN++I  + H    + A  LF  M       D FS +L++   +R
Sbjct: 78  RSFSPGGGDXEDXYLWNAVIKSHSHGTDPRRALLLFCLMLENGVSVDKFSLSLVLKACSR 137

Query: 121 KGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG 180
            G +++  ++   L   + T  W+                         ++   N ++  
Sbjct: 138 LGLVKEGMQIHGFL---KKTGLWS-------------------------DLFLQNCLIGL 169

Query: 181 YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ--NVVSWVT 238
           Y K G +  A + F+ M +RD VS+N M+DGYV+    +SA + F  +PE+  N++SW +
Sbjct: 170 YLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSTESARELFDLMPEEMKNLISWNS 229

Query: 239 MLSGYARNGRMLE-ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
           M+SGYA+    ++ A +LF +MP +++++WN+MI  YV+ G+IE+A  LF  MP R+ V+
Sbjct: 230 MISGYAQTSDGVDIASKLFSEMPDKDLISWNSMIDGYVKHGRIEDAKYLFDVMPRRDVVT 289

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG---- 353
           W+TMIDGY ++  + +A+ L DQMP++++ +  +MI+GYVQN+   EA +IF  +     
Sbjct: 290 WSTMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMIAGYVQNRYNMEALEIFSDMEKESH 349

Query: 354 -THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWN----TMIAGYAQIRQMDDAV 408
            + D     +++   AQ GR+ +A+++   +V K           +I  Y++   +  A+
Sbjct: 350 LSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAM 409

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH- 467
            +F+ + + ++   WNA+I G   +     A  + + + +   K D  T    L+AC+H 
Sbjct: 410 LVFKGI-ENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGLLNACSHS 468

Query: 468 ------LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD--ADPV 519
                 L   +L R+ H +  +  +         ++ + ++ G I+ A+ L ++   +P 
Sbjct: 469 GLVKEGLLCFELMRRKHKIEPRLQHY------GCMVDILSRSGSIELAKNLIEEMPIEPN 522

Query: 520 DVISWNSLIAG 530
           DVI W + +A 
Sbjct: 523 DVI-WRTFLAA 532



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 104/294 (35%), Positives = 161/294 (54%), Gaps = 13/294 (4%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F QN  I    K G +  A +IF +M Q+++V+YNSMI  Y K G    AR+LF+ M
Sbjct: 158 SDLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSTESARELFDLM 217

Query: 73  PQ--RNLVSWNSMIAGYLH-NDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARE 129
           P+  +NL+SWNSMI+GY   +D V  A +LF +M   DL SW  MI  Y + G +E A+ 
Sbjct: 218 PEEMKNLISWNSMISGYAQTSDGVDIASKLFSEMPDKDLISWNSMIDGYVKHGRIEDAKY 277

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           LFD++P + D   W+ M+ GYAK+G  ++AK L D MP +++VS+NSM++GY +N     
Sbjct: 278 LFDVMP-RRDVVTWSTMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMIAGYVQNRYNME 336

Query: 190 ASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV----SWVTML 240
           A + F  ME+      D  +  ++L    +L  L  A      I E+         V ++
Sbjct: 337 ALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALI 396

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
             Y++ G +  A  +F  +  +++  WNAMI      G  E A  + +++  R+
Sbjct: 397 DMYSKCGSIQHAMLVFKGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRS 450



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 157/329 (47%), Gaps = 21/329 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I    K GR+E+A  +F  M +++ VT+++MI  YAK G V+ A+ LF+QMP R++V
Sbjct: 260 NSMIDGYVKHGRIEDAKYLFDVMPRRDVVTWSTMIDGYAKLGFVHQAKTLFDQMPHRDVV 319

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFDL 133
           S+NSMIAGY+ N    EA E+F  M       PD  +  ++++   + G L KA ++   
Sbjct: 320 SYNSMIAGYVQNRYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLY 379

Query: 134 LPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           +  K+         A++  Y+K G+   A  +   + +K+I  WN+M+ G   +G    A
Sbjct: 380 IVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFKGIENKSIDHWNAMIGGLAIHGLGESA 439

Query: 191 SKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLS 241
                 +E R    D +++  +L+       +      F+ +  ++ +      +  M+ 
Sbjct: 440 FDMLLQIERRSIKPDDITFVGLLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVD 499

Query: 242 GYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEA---ARLFIEMPERNPVS 297
             +R+G +  A+ L ++MPI  N V W   +AA     + E     A+  I     NP S
Sbjct: 500 ILSRSGSIELAKNLIEEMPIEPNDVIWRTFLAACNHHKEFETGELVAKHLIWEAGYNPSS 559

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
           +  + + Y    K  + RR+   M  + I
Sbjct: 560 YVLLSNLYASFGKWKDVRRIRTIMKERKI 588



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 104/218 (47%), Gaps = 9/218 (4%)

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
           G   +   WNA+I           AL +F LM + G   D  +L+  L AC+ L  ++ G
Sbjct: 85  GDXEDXYLWNAVIKSHSHGTDPRRALLLFCLMLENGVSVDKFSLSLVLKACSRLGLVKEG 144

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
            QIH    K+G  +DLF+ N LI +Y KCG +  A  +F      D +S+NS+I GY   
Sbjct: 145 MQIHGFLKKTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVKC 204

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG-LVDGGLKLFECMTEVYAIEPLVE 593
           G+   A +LF+ M  E    + +++  ++S  +     VD   KLF  M +   I     
Sbjct: 205 GSTESARELFDLMPEE--MKNLISWNSMISGYAQTSDGVDIASKLFSEMPDKDLIS---- 258

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
            +  MID   + GR+++A  +   M  + +   W T++
Sbjct: 259 -WNSMIDGYVKHGRIEDAKYLFDVMP-RRDVVTWSTMI 294


>gi|356498922|ref|XP_003518295.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Glycine max]
          Length = 682

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 190/499 (38%), Positives = 294/499 (58%), Gaps = 63/499 (12%)

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM--PERNPVSWTT 300
           YA+ G +  AR+LFD+MP R    WN +I+ Y + G  +EA RLF  M   E+N ++WTT
Sbjct: 144 YAKYGCIELARKLFDEMPDRTAADWNVIISGYWKCGNEKEATRLFCMMGESEKNVITWTT 203

Query: 301 MIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH----D 356
           M+ G+ ++  L+ AR   D+MP + +A+  AM+SGY Q+    E  ++FD + +     D
Sbjct: 204 MVTGHAKMRNLETARMYFDEMPERRVASWNAMLSGYAQSGAAQETVRLFDDMLSSGNEPD 263

Query: 357 VVCW------------------------------NVMIKG-----YAQCGRMDEAINLFR 381
              W                              N  +K      +A+CG ++ A  +F 
Sbjct: 264 ETTWVTVLSSCSSLGDPCLAESIVRKLDRMNFRSNYFVKTALLDMHAKCGNLEVAQKIFE 323

Query: 382 QM-VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
           Q+ V K+ VTWN MI+ YA++  +  A  +F +M   RNTVSWN++I+G+ QN   L A+
Sbjct: 324 QLGVYKNSVTWNAMISAYARVGDLSLARDLFNKM-PERNTVSWNSMIAGYAQNGESLKAI 382

Query: 441 KIFV-LMTQEGKKADHSTLACALSACAHLAALQLGRQ----IHHLAIK---SGYVNDLFV 492
           ++F  +++ +  K D  T+    SAC HL  L LG      +H   IK   SGY      
Sbjct: 383 QLFKEMISSKDSKPDEVTMVSVFSACGHLGRLGLGNWAVSILHENHIKLSISGY------ 436

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
            NSLI MY +CG +++A + F++    D++S+N+LI+G A +G+ TE+IKL  +M  +G+
Sbjct: 437 -NSLIFMYLRCGSMEDARITFQEMATKDLVSYNTLISGLAAHGHGTESIKLMSKMKEDGI 495

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
            PD +T+IGVL+ACSH GL++ G K+FE +       P V+HYACMID+L R G+L+EA 
Sbjct: 496 GPDRITYIGVLTACSHAGLLEEGWKVFESIKV-----PDVDHYACMIDMLGRVGKLEEAV 550

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672
           ++++ M ++P+AGI+G+LL A  +H+ ++LG +A  KL ++EP  +  Y LLSN++A AG
Sbjct: 551 KLIQSMPMEPHAGIYGSLLNATSIHKQVELGELAAAKLFKVEPHNSGNYVLLSNIYALAG 610

Query: 673 RWDEVEKVRVSMEGSGAQK 691
           RW +V+KVR  M   G +K
Sbjct: 611 RWKDVDKVRDKMRKQGVKK 629



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 135/514 (26%), Positives = 234/514 (45%), Gaps = 63/514 (12%)

Query: 20  KKITQLGKSGRVEEAIKIFSQMSQKN-----TVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           K  +Q+G + +V   + +F  M   N     T  Y  +I +  K G +  A  L      
Sbjct: 75  KYYSQIGATTQV--VVSLFKHMQYYNDIKPYTSFYPVLIKSAGKAGMLLHAYLLKLGHSH 132

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
            + V  N+++  Y     ++ AR+LFD+M       W ++I+ Y + G  ++A  LF ++
Sbjct: 133 DHHVR-NAIMGIYAKYGCIELARKLFDEMPDRTAADWNVIISGYWKCGNEKEATRLFCMM 191

Query: 135 PNKE-DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
              E +   W  MV G+AK+ N   A+   D MP + + SWN+MLSGY ++G      + 
Sbjct: 192 GESEKNVITWTTMVTGHAKMRNLETARMYFDEMPERRVASWNAMLSGYAQSGAAQETVRL 251

Query: 194 FEAM----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS----WVTMLSGYAR 245
           F+ M     E D  +W  +L     L D   A    +K+   N  S       +L  +A+
Sbjct: 252 FDDMLSSGNEPDETTWVTVLSSCSSLGDPCLAESIVRKLDRMNFRSNYFVKTALLDMHAK 311

Query: 246 NGRMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDG 304
            G +  A+++F+Q+ + +N V WNAMI+AY + G +  A  LF +MPERN VSW +MI G
Sbjct: 312 CGNLEVAQKIFEQLGVYKNSVTWNAMISAYARVGDLSLARDLFNKMPERNTVSWNSMIAG 371

Query: 305 YVRIAKLDEARRLLDQM-----PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
           Y +  +  +A +L  +M        +     ++ S      R+   N     +  + +  
Sbjct: 372 YAQNGESLKAIQLFKEMISSKDSKPDEVTMVSVFSACGHLGRLGLGNWAVSILHENHIKL 431

Query: 360 ----WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMG 415
               +N +I  Y +CG M++A   F++M  KD+V++NT+I+G A      +++K+  +  
Sbjct: 432 SISGYNSLIFMYLRCGSMEDARITFQEMATKDLVSYNTLISGLAAHGHGTESIKLMSK-- 489

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
                                         M ++G   D  T    L+AC+H   L+ G 
Sbjct: 490 ------------------------------MKEDGIGPDRITYIGVLTACSHAGLLEEGW 519

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA 509
           ++     +S  V D+     +I M  + G+++ A
Sbjct: 520 KV----FESIKVPDVDHYACMIDMLGRVGKLEEA 549



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 192/411 (46%), Gaps = 69/411 (16%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQM--SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRN 76
           N  I+   K G  +EA ++F  M  S+KN +T+ +M++ +AK   +  AR  F++MP+R 
Sbjct: 169 NVIISGYWKCGNEKEATRLFCMMGESEKNVITWTTMVTGHAKMRNLETARMYFDEMPERR 228

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKM--------------------------------- 103
           + SWN+M++GY  +   +E   LFD M                                 
Sbjct: 229 VASWNAMLSGYAQSGAAQETVRLFDDMLSSGNEPDETTWVTVLSSCSSLGDPCLAESIVR 288

Query: 104 ------FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYN 157
                 FR + F    ++  + + G LE A+++F+ L   +++  WNAM++ YA++G+ +
Sbjct: 289 KLDRMNFRSNYFVKTALLDMHAKCGNLEVAQKIFEQLGVYKNSVTWNAMISAYARVGDLS 348

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDD 217
            A+ L + MP +N VSWNSM++GY +NGE   A + F+ M                 +  
Sbjct: 349 LARDLFNKMPERNTVSWNSMIAGYAQNGESLKAIQLFKEM-----------------ISS 391

Query: 218 LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQ 276
            DS      K  E  +VS  +      R G    A  +  +  I+ ++  +N++I  Y++
Sbjct: 392 KDS------KPDEVTMVSVFSACGHLGRLGLGNWAVSILHENHIKLSISGYNSLIFMYLR 445

Query: 277 RGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAM 332
            G +E+A   F EM  ++ VS+ T+I G        E+ +L+ +M    I         +
Sbjct: 446 CGSMEDARITFQEMATKDLVSYNTLISGLAAHGHGTESIKLMSKMKEDGIGPDRITYIGV 505

Query: 333 ISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
           ++       ++E  ++F+ I   DV  +  MI    + G+++EA+ L + M
Sbjct: 506 LTACSHAGLLEEGWKVFESIKVPDVDHYACMIDMLGRVGKLEEAVKLIQSM 556



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 150/328 (45%), Gaps = 69/328 (21%)

Query: 351 KIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGY----------- 398
           K+G +HD    N ++  YA+ G ++ A  LF +M ++    WN +I+GY           
Sbjct: 127 KLGHSHDHHVRNAIMGIYAKYGCIELARKLFDEMPDRTAADWNVIISGYWKCGNEKEATR 186

Query: 399 ----------------------AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
                                 A++R ++ A   F+EM +RR   SWNA++SG+ Q+   
Sbjct: 187 LFCMMGESEKNVITWTTMVTGHAKMRNLETARMYFDEMPERR-VASWNAMLSGYAQSGAA 245

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSL 496
            + +++F  M   G + D +T    LS+C+ L    L   I     +  + ++ FV  +L
Sbjct: 246 QETVRLFDDMLSSGNEPDETTWVTVLSSCSSLGDPCLAESIVRKLDRMNFRSNYFVKTAL 305

Query: 497 ITMYAKCGRIQNAEL--------------------------------LFKDADPVDVISW 524
           + M+AKCG ++ A+                                 LF      + +SW
Sbjct: 306 LDMHAKCGNLEVAQKIFEQLGVYKNSVTWNAMISAYARVGDLSLARDLFNKMPERNTVSW 365

Query: 525 NSLIAGYAINGNATEAIKLFEEMV-MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMT 583
           NS+IAGYA NG + +AI+LF+EM+  +   PD VT + V SAC H+G +  G      + 
Sbjct: 366 NSMIAGYAQNGESLKAIQLFKEMISSKDSKPDEVTMVSVFSACGHLGRLGLGNWAVSILH 425

Query: 584 EVYAIEPLVEHYACMIDLLSRAGRLDEA 611
           E + I+  +  Y  +I +  R G +++A
Sbjct: 426 ENH-IKLSISGYNSLIFMYLRCGSMEDA 452



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 123/249 (49%), Gaps = 46/249 (18%)

Query: 26  GKSGRVEEAIKIFSQMS-QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMI 84
            K G +E A KIF Q+   KN+VT+N+MISAYA+ G ++ AR LF +MP+RN VSWNSMI
Sbjct: 310 AKCGNLEVAQKIFEQLGVYKNSVTWNAMISAYARVGDLSLARDLFNKMPERNTVSWNSMI 369

Query: 85  AGYLHNDKVKEARELFDKMF-----RPD------------------LFSWAL-------- 113
           AGY  N +  +A +LF +M      +PD                  L +WA+        
Sbjct: 370 AGYAQNGESLKAIQLFKEMISSKDSKPDEVTMVSVFSACGHLGRLGLGNWAVSILHENHI 429

Query: 114 ---------MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLD 164
                    +I  Y R G +E AR  F  +  K D   +N +++G A  G+  E+ KL+ 
Sbjct: 430 KLSISGYNSLIFMYLRCGSMEDARITFQEMATK-DLVSYNTLISGLAAHGHGTESIKLMS 488

Query: 165 AMPSKNI----VSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
            M    I    +++  +L+  +  G +    K FE+++  DV  +  M+D    +  L+ 
Sbjct: 489 KMKEDGIGPDRITYIGVLTACSHAGLLEEGWKVFESIKVPDVDHYACMIDMLGRVGKLEE 548

Query: 221 AWKFFQKIP 229
           A K  Q +P
Sbjct: 549 AVKLIQSMP 557



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 70/133 (52%), Gaps = 4/133 (3%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  I    + G +E+A   F +M+ K+ V+YN++IS  A +G   ++ KL  +M +  + 
Sbjct: 437 NSLIFMYLRCGSMEDARITFQEMATKDLVSYNTLISGLAAHGHGTESIKLMSKMKEDGIG 496

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
              +++  ++    H   ++E  ++F+ +  PD+  +A MI    R G+LE+A +L   +
Sbjct: 497 PDRITYIGVLTACSHAGLLEEGWKVFESIKVPDVDHYACMIDMLGRVGKLEEAVKLIQSM 556

Query: 135 PNKEDTACWNAMV 147
           P +     + +++
Sbjct: 557 PMEPHAGIYGSLL 569



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 97/216 (44%), Gaps = 11/216 (5%)

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
           +A + G  +H   +K G+ +D  V N+++ +YAK G I+ A  LF +        WN +I
Sbjct: 113 SAGKAGMLLHAYLLKLGHSHDHHVRNAIMGIYAKYGCIELARKLFDEMPDRTAADWNVII 172

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI 588
           +GY   GN  EA +LF   +M     + +T+  +++  + +  ++     F+ M      
Sbjct: 173 SGYWKCGNEKEATRLF--CMMGESEKNVITWTTMVTGHAKMRNLETARMYFDEMP----- 225

Query: 589 EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKI---KPNAGIWGTLLGACRMHQNIKLGRI 645
           E  V  +  M+   +++G   E   +   M     +P+   W T+L +C    +  L   
Sbjct: 226 ERRVASWNAMLSGYAQSGAAQETVRLFDDMLSSGNEPDETTWVTVLSSCSSLGDPCLAES 285

Query: 646 AVEKLSELEPQKTS-CYALLSNMHAEAGRWDEVEKV 680
            V KL  +  +        L +MHA+ G  +  +K+
Sbjct: 286 IVRKLDRMNFRSNYFVKTALLDMHAKCGNLEVAQKI 321


>gi|345505222|gb|AEN99835.1| chlororespiratory reduction 4, partial [Lepidium sativum]
          Length = 597

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 171/445 (38%), Positives = 274/445 (61%), Gaps = 5/445 (1%)

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP--YKN 325
           N +I  Y++ G +  + ++F  MP+R+ VS+ +MIDGYV+   ++ AR L D MP   KN
Sbjct: 144 NCLIGLYLKCGCLGYSRQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMPKEMKN 203

Query: 326 IAAQTAMISGYVQNKR-MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
           + +   +ISGY Q    ++ A+++F ++   D++ WN MI GY + GR+++A +LF  M 
Sbjct: 204 LISWNCLISGYAQTSDGVNIASKLFSEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDVMP 263

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
            +D++TW TMI GYA++  +  A  +F+++   R+ V++N++++G++QN++H++AL++F+
Sbjct: 264 RRDVITWATMIDGYAKLGFIHQAKTLFDQI-PHRDVVAYNSMMAGYVQNKYHMEALELFI 322

Query: 445 LMTQEGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
            M +E     D +TL   LSA A L  L     +H   +K  +     +G +LI MY+KC
Sbjct: 323 KMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHFYIVKKQFFIGGKLGVALIDMYSKC 382

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
           G IQ+A L+FK  +  ++  WN++I G AI+G    A  +  ++    + PD +TFIGVL
Sbjct: 383 GSIQHAMLVFKGLENKNIDHWNAIIGGLAIHGLGGPAFDMLLQIERLSIKPDDITFIGVL 442

Query: 564 SACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPN 623
           +ACSH GLV  GL  FE M   + IEP ++HY CM+D+LSR+G ++ A  +++ M I+PN
Sbjct: 443 NACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKILIEKMPIEPN 502

Query: 624 AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVS 683
             IW T L AC  H+  ++G +  + L        S Y LLSNM+A  G W +V +VR  
Sbjct: 503 DVIWRTFLTACSHHKEFEMGELVAKHLILQAGYNPSSYVLLSNMYASCGMWKDVRRVRTM 562

Query: 684 MEGSGAQKQPGCSWIEVKNQIHTFL 708
           M+    QK PGCSWIE+  ++H F 
Sbjct: 563 MKERKIQKIPGCSWIELDGRVHEFF 587



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 128/420 (30%), Positives = 219/420 (52%), Gaps = 29/420 (6%)

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           DLF    +I  Y + G L  +R++FD +P + D+  +N+M+ GY K G    A++L D M
Sbjct: 139 DLFLQNCLIGLYLKCGCLGYSRQVFDRMPQR-DSVSYNSMIDGYVKCGLIESARELFDLM 197

Query: 167 PS--KNIVSWNSMLSGYTKNGE-MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWK 223
           P   KN++SWN ++SGY +  + +++ASK F  M E+D++SWN M+DGYV+   ++ A  
Sbjct: 198 PKEMKNLISWNCLISGYAQTSDGVNIASKLFSEMPEKDLISWNSMIDGYVKHGRIEDAKD 257

Query: 224 FFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEA 283
            F  +P ++V++W TM+ GYA+ G + +A+ LFDQ+P R+VVA+N+M+A YVQ     EA
Sbjct: 258 LFDVMPRRDVITWATMIDGYAKLGFIHQAKTLFDQIPHRDVVAYNSMMAGYVQNKYHMEA 317

Query: 284 ARLFIEMPERNPVS--WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ--------TAMI 333
             LFI+M + + +S   TT++     IA+L    + +D M +  +  Q         A+I
Sbjct: 318 LELFIKMEKESHLSPDETTLVIVLSAIAQLGRLSKAMD-MHFYIVKKQFFIGGKLGVALI 376

Query: 334 SGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIV 389
             Y +   +  A  +F  +   ++  WN +I G A  G    A ++  Q+    +  D +
Sbjct: 377 DMYSKCGSIQHAMLVFKGLENKNIDHWNAIIGGLAIHGLGGPAFDMLLQIERLSIKPDDI 436

Query: 390 TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT---VSWNALISGFLQNEFHLDALKIFV-L 445
           T+  ++   +    + + +  FE M ++      +     +   L     ++  KI +  
Sbjct: 437 TFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKILIEK 496

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQI-HHLAIKSGYVNDLFVGNSLITMYAKCG 504
           M  E       T    L+AC+H    ++G  +  HL +++GY    +V   L  MYA CG
Sbjct: 497 MPIEPNDVIWRTF---LTACSHHKEFEMGELVAKHLILQAGYNPSSYV--LLSNMYASCG 551



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 95/278 (34%), Positives = 155/278 (55%), Gaps = 13/278 (4%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F QN  I    K G +  + ++F +M Q+++V+YNSMI  Y K G +  AR+LF+ M
Sbjct: 138 SDLFLQNCLIGLYLKCGCLGYSRQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLM 197

Query: 73  PQ--RNLVSWNSMIAGYLH-NDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARE 129
           P+  +NL+SWN +I+GY   +D V  A +LF +M   DL SW  MI  Y + G +E A++
Sbjct: 198 PKEMKNLISWNCLISGYAQTSDGVNIASKLFSEMPEKDLISWNSMIDGYVKHGRIEDAKD 257

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           LFD++P + D   W  M+ GYAK+G  ++AK L D +P +++V++NSM++GY +N     
Sbjct: 258 LFDVMP-RRDVITWATMIDGYAKLGFIHQAKTLFDQIPHRDVVAYNSMMAGYVQNKYHME 316

Query: 190 ASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKF-FQKIPEQNVVS---WVTML 240
           A + F  ME+      D  +  ++L    +L  L  A    F  + +Q  +     V ++
Sbjct: 317 ALELFIKMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHFYIVKKQFFIGGKLGVALI 376

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
             Y++ G +  A  +F  +  +N+  WNA+I      G
Sbjct: 377 DMYSKCGSIQHAMLVFKGLENKNIDHWNAIIGGLAIHG 414



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/267 (33%), Positives = 148/267 (55%), Gaps = 13/267 (4%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR--PD 107
           N +I  Y K G +  +R++F++MPQR+ VS+NSMI GY+    ++ ARELFD M +   +
Sbjct: 144 NCLIGLYLKCGCLGYSRQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMPKEMKN 203

Query: 108 LFSWALMITCYTRKGE-LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           L SW  +I+ Y +  + +  A +LF  +P K D   WN+M+ GY K G   +AK L D M
Sbjct: 204 LISWNCLISGYAQTSDGVNIASKLFSEMPEK-DLISWNSMIDGYVKHGRIEDAKDLFDVM 262

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
           P +++++W +M+ GY K G +H A   F+ +  RDVV++N M+ GYV+      A + F 
Sbjct: 263 PRRDVITWATMIDGYAKLGFIHQAKTLFDQIPHRDVVAYNSMMAGYVQNKYHMEALELFI 322

Query: 227 KIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN----AMIAAYVQR 277
           K+ +++ +S      V +LS  A+ GR+ +A  +   +  +          A+I  Y + 
Sbjct: 323 KMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHFYIVKKQFFIGGKLGVALIDMYSKC 382

Query: 278 GQIEEAARLFIEMPERNPVSWTTMIDG 304
           G I+ A  +F  +  +N   W  +I G
Sbjct: 383 GSIQHAMLVFKGLENKNIDHWNAIIGG 409



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 171/325 (52%), Gaps = 22/325 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQ--KNTVTYNSMISAYAKNGR-VNDARKLFEQMPQR 75
           N  I    K G +E A ++F  M +  KN +++N +IS YA+    VN A KLF +MP++
Sbjct: 175 NSMIDGYVKCGLIESARELFDLMPKEMKNLISWNCLISGYAQTSDGVNIASKLFSEMPEK 234

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           +L+SWNSMI GY+ + ++++A++LFD M R D+ +WA MI  Y + G + +A+ LFD +P
Sbjct: 235 DLISWNSMIDGYVKHGRIEDAKDLFDVMPRRDVITWATMIDGYAKLGFIHQAKTLFDQIP 294

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNS-----MLSGYTKNGEMHLA 190
           ++ D   +N+M+AGY +   + EA +L   M  ++ +S +      +LS   + G +  A
Sbjct: 295 HR-DVVAYNSMMAGYVQNKYHMEALELFIKMEKESHLSPDETTLVIVLSAIAQLGRLSKA 353

Query: 191 SKF-FEAMEERDVVSWNL---MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARN 246
               F  ++++  +   L   ++D Y +   +  A   F+ +  +N+  W  ++ G A +
Sbjct: 354 MDMHFYIVKKQFFIGGKLGVALIDMYSKCGSIQHAMLVFKGLENKNIDHWNAIIGGLAIH 413

Query: 247 GRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS----- 297
           G    A  +  Q+   ++    + +  ++ A    G ++E    F  M  ++ +      
Sbjct: 414 GLGGPAFDMLLQIERLSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQH 473

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMP 322
           +  M+D   R   ++ A+ L+++MP
Sbjct: 474 YGCMVDILSRSGSIELAKILIEKMP 498



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 108/230 (46%), Gaps = 16/230 (6%)

Query: 410 IFEE-------MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
           +FEE        G+  +   WNA+I           +L +F LM + G   D  +L+  L
Sbjct: 53  VFEEHHVYSLPYGETEDPFLWNAVIKSHSHGTDPRRSLFLFCLMLENGVSVDKFSLSLVL 112

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
            AC+ L  ++ G  IH    K+G  +DLF+ N LI +Y KCG +  +  +F      D +
Sbjct: 113 KACSRLGFVKAGMXIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGYSRQVFDRMPQRDSV 172

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG-LVDGGLKLFEC 581
           S+NS+I GY   G    A +LF+ M  E    + +++  ++S  +     V+   KLF  
Sbjct: 173 SYNSMIDGYVKCGLIESARELFDLMPKE--MKNLISWNCLISGYAQTSDGVNIASKLFSE 230

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           M E   I      +  MID   + GR+++A ++   M  + +   W T++
Sbjct: 231 MPEKDLIS-----WNSMIDGYVKHGRIEDAKDLFDVMP-RRDVITWATMI 274



 Score = 45.1 bits (105), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 9/137 (6%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           I    K G ++ A+ +F  +  KN   +N++I   A +G    A  +  Q+ + ++   +
Sbjct: 376 IDMYSKCGSIQHAMLVFKGLENKNIDHWNAIIGGLAIHGLGGPAFDMLLQIERLSIKPDD 435

Query: 82  SMIAGYL----HNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARELFD 132
               G L    H+  VKE    F+ M R     P L  +  M+   +R G +E A+ L +
Sbjct: 436 ITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKILIE 495

Query: 133 LLPNKEDTACWNAMVAG 149
            +P + +   W   +  
Sbjct: 496 KMPIEPNDVIWRTFLTA 512


>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  345 bits (884), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 228/765 (29%), Positives = 370/765 (48%), Gaps = 82/765 (10%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM------- 103
           S +S   + G  + A  LF+ +P+   V WN++I G++ N+   +A   + +M       
Sbjct: 42  SRLSHLCRQGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPK 101

Query: 104 FRPDLFSWAL-------------MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGY 150
           F    FS  L              + C+  +     +R +++ L N   T        G 
Sbjct: 102 FDSYTFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGT 161

Query: 151 A-KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSW 205
           A    N +  +++ D M  +N+V+WN+M+S Y K   +  A K F  M    +    VS+
Sbjct: 162 AYDFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSF 221

Query: 206 NLMLDGYVELDDLDSA---WKFFQKIPEQNVVSWVTMLSG---YARNGRMLEARRLFDQM 259
             +      ++D D+A   +    K+    V  +  + S    YA  G +  AR +FD  
Sbjct: 222 VNVFPAVWRMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCC 281

Query: 260 PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER-----NPVSWTTMIDGYVRIAKLDEA 314
             RN   WN MI  YVQ     EA  LF+++ E      + V++ + +    ++  LD  
Sbjct: 282 LERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLG 341

Query: 315 RRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC 370
           R+L    L       +    A+I  Y +   +  + ++F  +   DVV WN M+  + Q 
Sbjct: 342 RQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQN 401

Query: 371 GRMDEAINLFRQMVNK----DIVTWNTMIAGYAQIRQ--------------------MD- 405
           G  DE + L  +M  +    D VT   +++  + +R                     MD 
Sbjct: 402 GLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDG 461

Query: 406 -------------DAVKIFEEMGKR-RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
                         A ++FE+     R+  +WNA+I+G+ QN    +   +F  M ++  
Sbjct: 462 YLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNV 521

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL 511
           + +  TLA  L AC  +  + LG+QIH  AI+     ++FVG +L+ MY+K G I  AE 
Sbjct: 522 RPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNQNVFVGTALLDMYSKSGAITYAEN 581

Query: 512 LFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
           +F +    + +++ ++I  Y  +G    A+ LF  M+  G+ PD VTF+ +LSACS+ GL
Sbjct: 582 VFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGL 641

Query: 572 VDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNA-GIWGTL 630
           VD GL++F+ M   Y I+P  EHY C+ D+L R GR+ EA+E VKG+  + N   IWG+L
Sbjct: 642 VDEGLRIFQSMEREYKIQPSSEHYCCVADMLGRVGRVXEAYEFVKGLGEEGNTFRIWGSL 701

Query: 631 LGACRMHQNIKLGRIAVEKLSELEPQK--TSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688
           LGACR+H   +LG++   KL E+E     T  + LLSN++A  G WD V++VR  M   G
Sbjct: 702 LGACRIHGEFELGKVVANKLLEMEKGSXLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKG 761

Query: 689 AQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
             K+ GCSW+EV   ++ F+S D K  + AEI   L+ LA ++++
Sbjct: 762 LMKEAGCSWVEVAGHVNCFMSRDHKHPQCAEIYQMLEKLAMEMKD 806



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 96/432 (22%), Positives = 187/432 (43%), Gaps = 68/432 (15%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F  +  I    + G V+ A +IF    ++NT  +N+MI  Y +N    +A  LF Q+ + 
Sbjct: 256 FVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVME- 314

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
                                     + F  D  ++   +T  ++   L+  R+L   + 
Sbjct: 315 -------------------------SEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYIL 349

Query: 136 NKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
                      NA++  Y++ G+   + K+   M  +++V+WN+M+S + +NG       
Sbjct: 350 KSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLM 409

Query: 193 FFEAMEERDVVSWNLMLDGYVEL-DDLDSAWKFFQKIPEQNVVSWVT-----------ML 240
               M+++  +  ++ L   + L  +L S     Q+I +Q     +            ++
Sbjct: 410 LVFEMQKQGFMVDSVTLTALLSLASNLRS-----QEIGKQAHAYLIRHGIQFEGMDGYLI 464

Query: 241 SGYARNGRMLEARRLFDQMPI--RNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----N 294
             YA++G +  A++LF++     R+   WNAMIA Y Q G  EE   +F +M E+    N
Sbjct: 465 DMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPN 524

Query: 295 PVSWTTMID-----GYVRIAKLDEA---RRLLDQMPYKNIAAQTAMISGYVQNKRMDEAN 346
            V+  +++      G + + K       R  L+Q    N+   TA++  Y ++  +  A 
Sbjct: 525 AVTLASILPACNPMGTIGLGKQIHGFAIRCFLNQ----NVFVGTALLDMYSKSGAITYAE 580

Query: 347 QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIR 402
            +F +    + V +  MI  Y Q G  + A++LF  M    +  D VT+  +++  +   
Sbjct: 581 NVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAG 640

Query: 403 QMDDAVKIFEEM 414
            +D+ ++IF+ M
Sbjct: 641 LVDEGLRIFQSM 652



 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 145/321 (45%), Gaps = 25/321 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKL-FEQMPQRNL 77
           N  I    + G +  + K+FS M +++ VT+N+M+SA+ +NG  ++   L FE   Q  +
Sbjct: 361 NAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFM 420

Query: 78  VSWNSMIA--GYLHNDKVKE-ARELFDKMFRPDLFSWAL---MITCYTRKGELEKARELF 131
           V   ++ A      N + +E  ++    + R  +    +   +I  Y + G +  A++LF
Sbjct: 421 VDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDGYLIDMYAKSGLITTAQQLF 480

Query: 132 DLLPNKE-DTACWNAMVAGYAKIGNYNEA----KKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           +     + D A WNAM+AGY + G   E     +K+++     N V+  S+L      G 
Sbjct: 481 EKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGT 540

Query: 187 MHLASKF----FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG 242
           + L  +           ++V     +LD Y +   +  A   F +  E+N V++ TM+  
Sbjct: 541 IGLGKQIHGFAIRCFLNQNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILS 600

Query: 243 YARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPER---NP 295
           Y ++G    A  LF  M    +    V + A+++A    G ++E  R+F  M       P
Sbjct: 601 YGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQP 660

Query: 296 VS--WTTMIDGYVRIAKLDEA 314
            S  +  + D   R+ ++ EA
Sbjct: 661 SSEHYCCVADMLGRVGRVXEA 681



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 14/179 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF     +    KSG +  A  +F++  +KN+VTY +MI +Y ++G    A  LF  M  
Sbjct: 560 VFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLG 619

Query: 75  RNL----VSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELE 125
             +    V++ ++++   +   V E   +F  M R     P    +  +     R G + 
Sbjct: 620 SGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSSEHYCCVADMLGRVGRVX 679

Query: 126 KARELFDLLPNKEDT-ACWNAMVAGYAKIGNYNEAK----KLLDAMPSKNIVSWNSMLS 179
           +A E    L  + +T   W +++      G +   K    KLL+      +  ++ +LS
Sbjct: 680 EAYEFVKGLGEEGNTFRIWGSLLGACRIHGEFELGKVVANKLLEMEKGSXLTGYHVLLS 738


>gi|108712052|gb|ABF99847.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1221

 Score =  345 bits (884), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 197/618 (31%), Positives = 327/618 (52%), Gaps = 51/618 (8%)

Query: 166 MPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV----SWNLMLDGYVELDDLDSA 221
           MP KN+V+W S++SGYT+NG    A   F  M E  V     + N  L    +L  L + 
Sbjct: 1   MPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAG 60

Query: 222 WKFFQKIPEQNVV--SWV--TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR 277
            +             +W+   ++  Y+R G +  A+ +FD+M   +VV + ++I+A+ + 
Sbjct: 61  EQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRN 120

Query: 278 GQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN--IAAQTA 331
           G+ E AA   I+M ++    N  + TT++    R+        L+ ++  ++  + + TA
Sbjct: 121 GEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKIGLRSQSVYSSTA 180

Query: 332 MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----- 386
           +I  Y +N     A  +FD +   +VV W  M++ Y + GR++EA+ +F  M+++     
Sbjct: 181 LIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPN 240

Query: 387 -------------------------------DIVTWNTMIAGYAQIRQMDDAVKIFEEMG 415
                                          DI   N +++ Y +   +++   +  ++ 
Sbjct: 241 EFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKI- 299

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
           +  + VSW   IS   QN F   A+ +   M  EG   +    +  LS+CA +A+L  G 
Sbjct: 300 ENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGM 359

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
           Q H LA+K G  +++  GN+LI MY+KCG++ +A L F      DV SWNSLI G+A +G
Sbjct: 360 QFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHG 419

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHY 595
           +A +A+++F +M   G+ PD  TF+GVL  C+H G+V+ G   F  M + Y+  P   HY
Sbjct: 420 DANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHY 479

Query: 596 ACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEP 655
           ACMID+L R GR DEA  M+  M  +P+A IW TLL +C++H+N+ +G++A ++L EL  
Sbjct: 480 ACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSD 539

Query: 656 QKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQC 715
           + ++ Y L+SN++A  G W++  KVR  M+ +G +K  GCSWIE+ N++HTF S D    
Sbjct: 540 RDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEINNEVHTFASRDMSHP 599

Query: 716 RTAEICNTLKTLAAQIRN 733
            +  I   L  L A +++
Sbjct: 600 NSDSIYQMLGELVAVMQD 617



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 143/592 (24%), Positives = 242/592 (40%), Gaps = 118/592 (19%)

Query: 41  MSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV---------------------- 78
           M +KN V + S++S Y +NGR   A  +F  M +  +                       
Sbjct: 1   MPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAG 60

Query: 79  ---------------SW--NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRK 121
                          +W  + +I  Y     +  A+E+FD+M  PD+  +  +I+ + R 
Sbjct: 61  EQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRN 120

Query: 122 GELEKARELF------DLLPNKED-----TACWNAM---VAGY--AKIGNYNEAKKLLDA 165
           GE E A E         L PN+       TAC   +   + GY   KIG           
Sbjct: 121 GEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKIG----------- 169

Query: 166 MPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFF 225
           + S+++ S  +++  Y++NGE  LA   F+++  ++VVSW  M+  Y+    L+ A + F
Sbjct: 170 LRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVF 229

Query: 226 QKI------PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ 279
             +      P +  +S V    G    GR L    +   + I ++   NA+++ Y + G 
Sbjct: 230 GDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDL-ITDIRVSNALLSMYGRTGL 288

Query: 280 IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK----NIAAQTAMISG 335
           +EE   +  ++   + VSWTT I    +    ++A  LL QM  +    N  A ++++S 
Sbjct: 289 VEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSS 348

Query: 336 YVQNKRMDEANQIFD---KIGTHDVVC-WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTW 391
                 +D+  Q      K+G    +C  N +I  Y++CG+M  A   F  M   D+ +W
Sbjct: 349 CADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSW 408

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
           N++I G+A   Q  DA K                             AL++F  M   G 
Sbjct: 409 NSLIHGHA---QHGDANK-----------------------------ALEVFSKMRSNGI 436

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAI-KSGYVNDLFVGNSLITMYAKCGRIQNAE 510
           K D ST    L  C H   ++ G     L I +  +         +I M  + GR   A 
Sbjct: 437 KPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEAL 496

Query: 511 LLFKDA--DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
            +  D   +P D + W +L+A   ++ N  +  KL  + +ME    D  +++
Sbjct: 497 RMINDMPFEP-DALIWKTLLASCKLHRN-LDIGKLAADRLMELSDRDSASYV 546



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/419 (21%), Positives = 191/419 (45%), Gaps = 43/419 (10%)

Query: 41  MSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF 100
           +  ++  +  ++I  Y++NG    A+ +F+ +  +N+VSW SM+  Y+ + +++EA ++F
Sbjct: 170 LRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVF 229

Query: 101 DKMFR----PDLFSWALMI-TCYTRKGELEKAREL------FDLLPNKEDTACWNAMVAG 149
             M      P+ F+ ++++  C    G +   R+L       DL+    D    NA+++ 
Sbjct: 230 GDMISEGVDPNEFALSIVLGAC----GSIGLGRQLHCSAIKHDLI---TDIRVSNALLSM 282

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV----SW 205
           Y + G   E + +L+ + + ++VSW + +S   +NG    A      M          ++
Sbjct: 283 YGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAF 342

Query: 206 NLMLDGYVELDDLDSAWKF----FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
           + +L    ++  LD   +F     +   +  + +   +++ Y++ G+M  AR  FD M  
Sbjct: 343 SSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHT 402

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEA--- 314
            +V +WN++I  + Q G   +A  +F +M       +  ++  ++ G      ++E    
Sbjct: 403 HDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELF 462

Query: 315 -RRLLDQMPYKNIAAQTA-MISGYVQNKRMDEA-NQIFDKIGTHDVVCWNVMIKGYAQCG 371
            R ++DQ  +    +  A MI    +N R DEA   I D     D + W  ++       
Sbjct: 463 FRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHR 522

Query: 372 RMD---EAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKI---FEEMGKRRNT-VSW 423
            +D    A +   ++ ++D  ++  M   YA   + +DA K+    +E G +++   SW
Sbjct: 523 NLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSW 581



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 157/351 (44%), Gaps = 53/351 (15%)

Query: 5   LKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND 64
           +K IG +   V++    I    ++G  + A  +F  +  KN V++ SM+  Y ++GR+ +
Sbjct: 165 IKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEE 224

Query: 65  ARKLFEQM------P--------------------------QRNLVS----WNSMIAGYL 88
           A ++F  M      P                          + +L++     N++++ Y 
Sbjct: 225 ALQVFGDMISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYG 284

Query: 89  HNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTA---CWNA 145
               V+E   + +K+  PDL SW   I+   + G  EKA  L   + ++  T     +++
Sbjct: 285 RTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSS 344

Query: 146 MVAGYAKIGNYNEAKKL----LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
           +++  A + + ++  +     L       I + N++++ Y+K G+M  A   F+ M   D
Sbjct: 345 VLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHD 404

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEA----R 253
           V SWN ++ G+ +  D + A + F K+    +     +++ +L G   +G + E     R
Sbjct: 405 VTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFR 464

Query: 254 RLFDQMPIRNVVA-WNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMI 302
            + DQ       + +  MI    + G+ +EA R+  +MP E + + W T++
Sbjct: 465 LMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLL 515



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 101/212 (47%), Gaps = 23/212 (10%)

Query: 48  TYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM---- 103
           T N++I+ Y+K G++  AR  F+ M   ++ SWNS+I G+  +    +A E+F KM    
Sbjct: 376 TGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNG 435

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLL-------PNKEDTACWNAMVAGYAKIGNY 156
            +PD  ++  ++      G +E+    F L+       P     AC   M+    + G +
Sbjct: 436 IKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYAC---MIDMLGRNGRF 492

Query: 157 NEAKKLLDAMP-SKNIVSWNSMLSGYTKNGEM---HLASKFFEAMEERDVVSWNLMLDGY 212
           +EA ++++ MP   + + W ++L+    +  +    LA+     + +RD  S+ LM + Y
Sbjct: 493 DEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIY 552

Query: 213 VELDDLDSAWKFFQKIPEQNV-----VSWVTM 239
               + + A K  +++ E  V      SW+ +
Sbjct: 553 AMHGEWEDARKVRRRMDETGVKKDAGCSWIEI 584


>gi|356518777|ref|XP_003528054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 737

 Score =  345 bits (884), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 178/484 (36%), Positives = 288/484 (59%), Gaps = 15/484 (3%)

Query: 244 ARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMID 303
           A +G +++    FD          N +I AY + G  E A + F ++P +   SW T+I 
Sbjct: 31  AVHGHLIKTALFFD------AFLANGLIDAYSKCGCEESAHKTFGDLPNKTTRSWNTLIS 84

Query: 304 GYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH-DVVCWNV 362
            Y +    DEA  L D+MP +N+ +  ++ISG +Q  R      +   +G   +V+  N 
Sbjct: 85  FYSKTGFFDEAHNLFDKMPQRNVVSYNSLISGNLQWLRQVHGVAVI--VGMEWNVILNNA 142

Query: 363 MIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
           +I  Y +CG  + + ++F  M  +++V+W +M+  Y +  ++D+A ++F++M   +NTVS
Sbjct: 143 LIDAYGKCGEPNLSFSVFCYMPERNVVSWTSMVVAYTRACRLDEACRVFKDM-PVKNTVS 201

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482
           W AL++GF++N    +A  +F  M +EG +    T    + ACA  A +  G+Q+H   I
Sbjct: 202 WTALLTGFVRNGGCDEAFDVFKQMLEEGVRPSAPTFVSVIDACAQEALIGRGKQVHGQII 261

Query: 483 ---KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATE 539
              KSG + +++V N+LI MYAKCG +++AE LF+ A   DV++WN+LI G+A NG+  E
Sbjct: 262 RGDKSGNLFNVYVCNALIDMYAKCGDMKSAENLFEMAPMRDVVTWNTLITGFAQNGHGEE 321

Query: 540 AIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMI 599
           ++ +F  M+   V P+ VTF+GVLS C+H GL + GL+L + M   Y ++P  EHYA +I
Sbjct: 322 SLAVFRRMIEAKVEPNHVTFLGVLSGCNHAGLDNEGLQLVDLMERQYGVKPKAEHYALLI 381

Query: 600 DLLSRAGRLDEAFEMVKGMK--IKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK 657
           DLL R  RL EA  +++ +   IK +  +WG +LGACR+H N+ L R A EKL ELEP+ 
Sbjct: 382 DLLGRRNRLMEAMSLIEKVPDGIKNHIAVWGAVLGACRVHGNLDLARKAAEKLFELEPEN 441

Query: 658 TSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRT 717
           T  Y +L+N++A +G+W   +++R  M+    +K+P CS IE++N  H F++ D    + 
Sbjct: 442 TGRYVMLANIYAASGKWGGAKRIRNVMKERCLEKEPACSRIELRNARHEFVAKDKFHPQV 501

Query: 718 AEIC 721
            EIC
Sbjct: 502 EEIC 505



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 160/332 (48%), Gaps = 49/332 (14%)

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
           N ++  Y+K G    A K F  +  +   SWN ++  Y +    D A   F K+P++NVV
Sbjct: 49  NGLIDAYSKCGCEESAHKTFGDLPNKTTRSWNTLISFYSKTGFFDEAHNLFDKMPQRNVV 108

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
           S+ +++SG  +  R +    +   M   NV+  NA+I AY + G+   +  +F  MPERN
Sbjct: 109 SYNSLISGNLQWLRQVHGVAVIVGMEW-NVILNNALIDAYGKCGEPNLSFSVFCYMPERN 167

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF----- 349
            VSWT+M+  Y R  +LDEA R+   MP KN  + TA+++G+V+N   DEA  +F     
Sbjct: 168 VVSWTSMVVAYTRACRLDEACRVFKDMPVKNTVSWTALLTGFVRNGGCDEAFDVFKQMLE 227

Query: 350 ------------------------------------DKIGT-HDVVCWNVMIKGYAQCGR 372
                                               DK G   +V   N +I  YA+CG 
Sbjct: 228 EGVRPSAPTFVSVIDACAQEALIGRGKQVHGQIIRGDKSGNLFNVYVCNALIDMYAKCGD 287

Query: 373 MDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRR---NTVSWNALISG 429
           M  A NLF     +D+VTWNT+I G+AQ    ++++ +F  M + +   N V++  ++SG
Sbjct: 288 MKSAENLFEMAPMRDVVTWNTLITGFAQNGHGEESLAVFRRMIEAKVEPNHVTFLGVLSG 347

Query: 430 FLQNEFHLDALKIFVLMTQE---GKKADHSTL 458
                   + L++  LM ++     KA+H  L
Sbjct: 348 CNHAGLDNEGLQLVDLMERQYGVKPKAEHYAL 379



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 149/324 (45%), Gaps = 58/324 (17%)

Query: 80  WNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALM----ITCYTRKGELEKARELFDLLP 135
           ++ +I+  +   +VK A  +   + +  LF  A +    I  Y++ G  E A + F  LP
Sbjct: 13  YSFLISKCITARRVKLANAVHGHLIKTALFFDAFLANGLIDAYSKCGCEESAHKTFGDLP 72

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG--------------- 180
           NK  T  WN +++ Y+K G ++EA  L D MP +N+VS+NS++SG               
Sbjct: 73  NKT-TRSWNTLISFYSKTGFFDEAHNLFDKMPQRNVVSYNSLISGNLQWLRQVHGVAVIV 131

Query: 181 ---------------YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFF 225
                          Y K GE +L+   F  M ER+VVSW  M+  Y     LD A + F
Sbjct: 132 GMEWNVILNNALIDAYGKCGEPNLSFSVFCYMPERNVVSWTSMVVAYTRACRLDEACRVF 191

Query: 226 QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM-------------PIRNVVAWNAMIA 272
           + +P +N VSW  +L+G+ RNG   EA  +F QM              + +  A  A+I 
Sbjct: 192 KDMPVKNTVSWTALLTGFVRNGGCDEAFDVFKQMLEEGVRPSAPTFVSVIDACAQEALIG 251

Query: 273 AYVQ-RGQI---EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA 328
              Q  GQI   +++  LF      N      +ID Y +   +  A  L +  P +++  
Sbjct: 252 RGKQVHGQIIRGDKSGNLF------NVYVCNALIDMYAKCGDMKSAENLFEMAPMRDVVT 305

Query: 329 QTAMISGYVQNKRMDEANQIFDKI 352
              +I+G+ QN   +E+  +F ++
Sbjct: 306 WNTLITGFAQNGHGEESLAVFRRM 329



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/392 (26%), Positives = 180/392 (45%), Gaps = 58/392 (14%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F  N  I    K G  E A K F  +  K T ++N++IS Y+K G  ++A  LF++MPQR
Sbjct: 46  FLANGLIDAYSKCGCEESAHKTFGDLPNKTTRSWNTLISFYSKTGFFDEAHNLFDKMPQR 105

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           N+VS+NS+I+G L   +      +   M    + + AL I  Y + GE   +  +F  +P
Sbjct: 106 NVVSYNSLISGNLQWLRQVHGVAVIVGMEWNVILNNAL-IDAYGKCGEPNLSFSVFCYMP 164

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
            + +   W +MV  Y +    +EA ++   MP KN VSW ++L+G+ +NG    A   F+
Sbjct: 165 ER-NVVSWTSMVVAYTRACRLDEACRVFKDMPVKNTVSWTALLTGFVRNGGCDEAFDVFK 223

Query: 196 AMEER------------------------------------------DVVSWNLMLDGYV 213
            M E                                           +V   N ++D Y 
Sbjct: 224 QMLEEGVRPSAPTFVSVIDACAQEALIGRGKQVHGQIIRGDKSGNLFNVYVCNALIDMYA 283

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA----RRLFDQMPIRNVVAWNA 269
           +  D+ SA   F+  P ++VV+W T+++G+A+NG   E+    RR+ +     N V +  
Sbjct: 284 KCGDMKSAENLFEMAPMRDVVTWNTLITGFAQNGHGEESLAVFRRMIEAKVEPNHVTFLG 343

Query: 270 MIAAYVQRGQIEEAARLFIEMPERN----PVS--WTTMIDGYVRIAKLDEARRLLDQMP- 322
           +++     G   E  +L +++ ER     P +  +  +ID   R  +L EA  L++++P 
Sbjct: 344 VLSGCNHAGLDNEGLQL-VDLMERQYGVKPKAEHYALLIDLLGRRNRLMEAMSLIEKVPD 402

Query: 323 --YKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
               +IA   A++     +  +D A +  +K+
Sbjct: 403 GIKNHIAVWGAVLGACRVHGNLDLARKAAEKL 434



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 174/352 (49%), Gaps = 29/352 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I   GK G    +  +F  M ++N V++ SM+ AY +  R+++A ++F+ MP +N V
Sbjct: 141 NALIDAYGKCGEPNLSFSVFCYMPERNVVSWTSMVVAYTRACRLDEACRVFKDMPVKNTV 200

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELF--- 131
           SW +++ G++ N    EA ++F +M     RP   ++  +I    ++  + + +++    
Sbjct: 201 SWTALLTGFVRNGGCDEAFDVFKQMLEEGVRPSAPTFVSVIDACAQEALIGRGKQVHGQI 260

Query: 132 ---DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE-- 186
              D   N  +    NA++  YAK G+   A+ L +  P +++V+WN++++G+ +NG   
Sbjct: 261 IRGDKSGNLFNVYVCNALIDMYAKCGDMKSAENLFEMAPMRDVVTWNTLITGFAQNGHGE 320

Query: 187 --MHLASKFFEAMEERDVVSWNLMLDG--YVELDD-----LDSAWKFFQKIPEQNVVSWV 237
             + +  +  EA  E + V++  +L G  +  LD+     +D   + +   P+    + +
Sbjct: 321 ESLAVFRRMIEAKVEPNHVTFLGVLSGCNHAGLDNEGLQLVDLMERQYGVKPKAEHYALL 380

Query: 238 TMLSGYARNGRMLEARRLFDQMP--IRNVVA-WNAMIAAYVQRGQIE---EAARLFIEMP 291
             L G  R  R++EA  L +++P  I+N +A W A++ A    G ++   +AA    E+ 
Sbjct: 381 IDLLG--RRNRLMEAMSLIEKVPDGIKNHIAVWGAVLGACRVHGNLDLARKAAEKLFELE 438

Query: 292 ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMD 343
             N   +  + + Y    K   A+R+ + M  + +  + A     ++N R +
Sbjct: 439 PENTGRYVMLANIYAASGKWGGAKRIRNVMKERCLEKEPACSRIELRNARHE 490



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 76/191 (39%), Gaps = 22/191 (11%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           +S C     ++L   +H   IK+    D F+ N LI  Y+KCG  ++A   F D      
Sbjct: 17  ISKCITARRVKLANAVHGHLIKTALFFDAFLANGLIDAYSKCGCEESAHKTFGDLPNKTT 76

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV------------ 569
            SWN+LI+ Y+  G   EA  LF++M    V        G L     V            
Sbjct: 77  RSWNTLISFYSKTGFFDEAHNLFDKMPQRNVVSYNSLISGNLQWLRQVHGVAVIVGMEWN 136

Query: 570 -----GLVDGGLKLFECMTE----VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKI 620
                 L+D   K  E         Y  E  V  +  M+   +RA RLDEA  + K M +
Sbjct: 137 VILNNALIDAYGKCGEPNLSFSVFCYMPERNVVSWTSMVVAYTRACRLDEACRVFKDMPV 196

Query: 621 KPNAGIWGTLL 631
           K N   W  LL
Sbjct: 197 K-NTVSWTALL 206


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  345 bits (884), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 227/782 (29%), Positives = 394/782 (50%), Gaps = 71/782 (9%)

Query: 22  ITQLGKSGRV-EEAIKIFSQMSQKNTVT----YNSMISAYAKNGRVNDARKLFEQMPQRN 76
           +T  G+SG +  E +++   +++   ++      +++  Y   G V+ +RK+FE+MP RN
Sbjct: 65  VTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRN 124

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF----SWALMIT-CYTRKGELEKARELF 131
           +VSW S++ GY    + +E  +++  M    +     S +L+I+ C   K E    + + 
Sbjct: 125 VVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIG 184

Query: 132 DLLPNKEDT--ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
            ++ +  ++  A  N++++    +GN + A  + D M  ++ +SWNS+ + Y +NG +  
Sbjct: 185 QVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEE 244

Query: 190 ASKFFEAMEE------RDVVSWNLMLDGYVELDDLDSAWK-FFQKIPEQNVVSWV-TMLS 241
           + + F  M           VS  L + G+V+             K+   +VV    T+L 
Sbjct: 245 SFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLR 304

Query: 242 GYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVS 297
            YA  GR +EA  +F QMP +++++WN+++A++V  G+  +A  L   M       N V+
Sbjct: 305 MYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVT 364

Query: 298 WTTMIDGYVRIAKLDEARRL-----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
           +T+ +         ++ R L     +  + Y  I    A++S Y +   M E+ ++  ++
Sbjct: 365 FTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGN-ALVSMYGKIGEMSESRRVLLQM 423

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTW----------------- 391
              DVV WN +I GYA+    D+A+  F+ M    V+ + +T                  
Sbjct: 424 PRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERG 483

Query: 392 -------------------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
                              N++I  YA+   +  +  +F  +   RN ++WNA+++    
Sbjct: 484 KPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGL-DNRNIITWNAMLAANAH 542

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
           +    + LK+   M   G   D  + +  LSA A LA L+ G+Q+H LA+K G+ +D F+
Sbjct: 543 HGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFI 602

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
            N+   MY+KCG I     +   +    + SWN LI+    +G   E    F EM+  G+
Sbjct: 603 FNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGI 662

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
            P  VTF+ +L+ACSH GLVD GL  ++ +   + +EP +EH  C+IDLL R+GRL EA 
Sbjct: 663 KPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAE 722

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672
             +  M +KPN  +W +LL +C++H N+  GR A E LS+LEP+  S Y L SNM A  G
Sbjct: 723 TFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTG 782

Query: 673 RWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           RW++VE VR  M     +K+  CSW+++K+++ +F  GD    +T EI   L+ +   I+
Sbjct: 783 RWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIK 842

Query: 733 NT 734
            +
Sbjct: 843 ES 844



 Score =  233 bits (594), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 191/723 (26%), Positives = 332/723 (45%), Gaps = 102/723 (14%)

Query: 56  YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSW 111
           Y K GRV  AR LF+ MP RN VSWN+M++G +      E  E F KM     +P  F  
Sbjct: 2   YTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVI 61

Query: 112 ALMITCYTRKGEL-EKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMP 167
           A ++T   R G +  +  ++   +       D     A++  Y   G  + ++K+ + MP
Sbjct: 62  ASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMP 121

Query: 168 SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV----SWNLMLDGYVELDDLDSAWK 223
            +N+VSW S++ GY+  GE       ++ M    V     S +L++     L D     +
Sbjct: 122 DRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQ 181

Query: 224 FFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ 279
              ++ +  + S +    +++S     G +  A  +FDQM  R+ ++WN++ AAY Q G 
Sbjct: 182 IIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGH 241

Query: 280 IEEAARLFIEM----PERNPVSWTTMID--GYVRIAKLDEA-RRLLDQMPYKNIAAQ-TA 331
           IEE+ R+F  M     E N  + +T++   G+V   K       L+ +M + ++      
Sbjct: 242 IEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNT 301

Query: 332 MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----D 387
           ++  Y    R  EAN +F ++ T D++ WN ++  +   GR  +A+ L   M++     +
Sbjct: 302 LLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVN 361

Query: 388 IVTW-----------------------------------NTMIAGYAQIRQMDDAVKIFE 412
            VT+                                   N +++ Y +I +M ++ ++  
Sbjct: 362 YVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLL 421

Query: 413 EMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA-AL 471
           +M  RR+ V+WNALI G+ ++E    AL  F  M  EG  +++ T+   LSAC      L
Sbjct: 422 QM-PRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLL 480

Query: 472 QLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGY 531
           + G+ +H   + +G+ +D  V NSLITMYAKCG + +++ LF   D  ++I+WN+++A  
Sbjct: 481 ERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAAN 540

Query: 532 AINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL------------- 578
           A +G+  E +KL  +M   GV+ D  +F   LSA + + +++ G +L             
Sbjct: 541 AHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDS 600

Query: 579 --FECMTEVYA-----------IEPLVEH----YACMIDLLSRAGRLDE---AFEMVKGM 618
             F    ++Y+           + P V      +  +I  L R G  +E    F  +  M
Sbjct: 601 FIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEM 660

Query: 619 KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSE---LEPQKTSCYALLSNMHAEAGRWD 675
            IKP    + +LL AC     +  G    + ++    LEP    C  ++ ++   +GR  
Sbjct: 661 GIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVI-DLLGRSGRLA 719

Query: 676 EVE 678
           E E
Sbjct: 720 EAE 722



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 133/597 (22%), Positives = 243/597 (40%), Gaps = 101/597 (16%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM----P 73
           +N  I+ LG  G V+ A  IF QMS+++T+++NS+ +AYA+NG + ++ ++F  M     
Sbjct: 198 ENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHD 257

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWAL----MITCYTRKGELEKARE 129
           + N  + +++++   H D  K  R +   + +    S       ++  Y   G   +A  
Sbjct: 258 EVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANL 317

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK-------------------- 169
           +F  +P K D   WN+++A +   G   +A  LL +M S                     
Sbjct: 318 VFKQMPTK-DLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPD 376

Query: 170 -------------------NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLD 210
                              N +  N+++S Y K GEM  + +    M  RDVV+WN ++ 
Sbjct: 377 FFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIG 436

Query: 211 GYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPI----- 261
           GY E +D D A   FQ +       N ++ V++LS     G +LE  +      +     
Sbjct: 437 GYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFE 496

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
            +    N++I  Y + G +  +  LF  +  RN ++W  M+         +E  +L+ +M
Sbjct: 497 SDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKM 556

Query: 322 PYKNIAAQ----TAMISGYVQNKRMDEANQIFD---KIG-THDVVCWNVMIKGYAQCGRM 373
               ++      +  +S   +   ++E  Q+     K+G  HD   +N     Y++CG +
Sbjct: 557 RSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEI 616

Query: 374 DEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433
            E + +    VN+ + +WN +I+   +    ++    F E                    
Sbjct: 617 GEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHE-------------------- 656

Query: 434 EFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS-GYVNDLFV 492
                       M + G K  H T    L+AC+H   +  G   + +  +  G    +  
Sbjct: 657 ------------MLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEH 704

Query: 493 GNSLITMYAKCGRIQNAELLFKD--ADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
              +I +  + GR+  AE         P D++ W SL+A   I+GN     K  E +
Sbjct: 705 CICVIDLLGRSGRLAEAETFISKMPMKPNDLV-WRSLLASCKIHGNLDRGRKAAENL 760



 Score = 44.7 bits (104), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 499 MYAKCGRIQNAELLFKDADPV-DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
           MY K GR++ A  LF D  PV + +SWN++++G    G   E ++ F +M   G+ P   
Sbjct: 1   MYTKFGRVKPARHLF-DIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSF 59

Query: 558 TFIGVLSACSHVG 570
               +++AC   G
Sbjct: 60  VIASLVTACGRSG 72


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 227/782 (29%), Positives = 394/782 (50%), Gaps = 71/782 (9%)

Query: 22  ITQLGKSGRV-EEAIKIFSQMSQKNTVT----YNSMISAYAKNGRVNDARKLFEQMPQRN 76
           +T  G+SG +  E +++   +++   ++      +++  Y   G V+ +RK+FE+MP RN
Sbjct: 48  VTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRN 107

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF----SWALMIT-CYTRKGELEKARELF 131
           +VSW S++ GY    + +E  +++  M    +     S +L+I+ C   K E    + + 
Sbjct: 108 VVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIG 167

Query: 132 DLLPNKEDT--ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
            ++ +  ++  A  N++++    +GN + A  + D M  ++ +SWNS+ + Y +NG +  
Sbjct: 168 QVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEE 227

Query: 190 ASKFFEAMEE------RDVVSWNLMLDGYVELDDLDSAWK-FFQKIPEQNVVSWV-TMLS 241
           + + F  M           VS  L + G+V+             K+   +VV    T+L 
Sbjct: 228 SFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLR 287

Query: 242 GYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVS 297
            YA  GR +EA  +F QMP +++++WN+++A++V  G+  +A  L   M       N V+
Sbjct: 288 MYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVT 347

Query: 298 WTTMIDGYVRIAKLDEARRL-----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
           +T+ +         ++ R L     +  + Y  I    A++S Y +   M E+ ++  ++
Sbjct: 348 FTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGN-ALVSMYGKIGEMSESRRVLLQM 406

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTW----------------- 391
              DVV WN +I GYA+    D+A+  F+ M    V+ + +T                  
Sbjct: 407 PRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERG 466

Query: 392 -------------------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
                              N++I  YA+   +  +  +F  +   RN ++WNA+++    
Sbjct: 467 KPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGL-DNRNIITWNAMLAANAH 525

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
           +    + LK+   M   G   D  + +  LSA A LA L+ G+Q+H LA+K G+ +D F+
Sbjct: 526 HGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFI 585

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
            N+   MY+KCG I     +   +    + SWN LI+    +G   E    F EM+  G+
Sbjct: 586 FNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGI 645

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
            P  VTF+ +L+ACSH GLVD GL  ++ +   + +EP +EH  C+IDLL R+GRL EA 
Sbjct: 646 KPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAE 705

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672
             +  M +KPN  +W +LL +C++H N+  GR A E LS+LEP+  S Y L SNM A  G
Sbjct: 706 TFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTG 765

Query: 673 RWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           RW++VE VR  M     +K+  CSW+++K+++ +F  GD    +T EI   L+ +   I+
Sbjct: 766 RWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIK 825

Query: 733 NT 734
            +
Sbjct: 826 ES 827



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 182/707 (25%), Positives = 322/707 (45%), Gaps = 102/707 (14%)

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGEL-EK 126
           MP RN VSWN+M++G +      E  E F KM     +P  F  A ++T   R G +  +
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFRE 60

Query: 127 ARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK 183
             ++   +       D     A++  Y   G  + ++K+ + MP +N+VSW S++ GY+ 
Sbjct: 61  GVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSD 120

Query: 184 NGEMHLASKFFEAMEERDVV----SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV-- 237
            GE       ++ M    V     S +L++     L D     +   ++ +  + S +  
Sbjct: 121 KGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAV 180

Query: 238 --TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----P 291
             +++S     G +  A  +FDQM  R+ ++WN++ AAY Q G IEE+ R+F  M     
Sbjct: 181 ENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHD 240

Query: 292 ERNPVSWTTMID--GYVRIAKLDEA-RRLLDQMPYKNIAAQ-TAMISGYVQNKRMDEANQ 347
           E N  + +T++   G+V   K       L+ +M + ++      ++  Y    R  EAN 
Sbjct: 241 EVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANL 300

Query: 348 IFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVTW------------ 391
           +F ++ T D++ WN ++  +   GR  +A+ L   M++     + VT+            
Sbjct: 301 VFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDF 360

Query: 392 -----------------------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
                                  N +++ Y +I +M ++ ++  +M  RR+ V+WNALI 
Sbjct: 361 FEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQM-PRRDVVAWNALIG 419

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA-ALQLGRQIHHLAIKSGYV 487
           G+ ++E    AL  F  M  EG  +++ T+   LSAC      L+ G+ +H   + +G+ 
Sbjct: 420 GYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFE 479

Query: 488 NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
           +D  V NSLITMYAKCG + +++ LF   D  ++I+WN+++A  A +G+  E +KL  +M
Sbjct: 480 SDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKM 539

Query: 548 VMEGVAPDPVTFIGVLSACSHVGLVDGGLKL---------------FECMTEVYA----- 587
              GV+ D  +F   LSA + + +++ G +L               F    ++Y+     
Sbjct: 540 RSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEI 599

Query: 588 ------IEPLVEH----YACMIDLLSRAGRLDE---AFEMVKGMKIKPNAGIWGTLLGAC 634
                 + P V      +  +I  L R G  +E    F  +  M IKP    + +LL AC
Sbjct: 600 GEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTAC 659

Query: 635 RMHQNIKLGRIAVEKLSE---LEPQKTSCYALLSNMHAEAGRWDEVE 678
                +  G    + ++    LEP    C  ++ ++   +GR  E E
Sbjct: 660 SHGGLVDKGLAYYDMIARDFGLEPAIEHCICVI-DLLGRSGRLAEAE 705



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 133/597 (22%), Positives = 243/597 (40%), Gaps = 101/597 (16%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM----P 73
           +N  I+ LG  G V+ A  IF QMS+++T+++NS+ +AYA+NG + ++ ++F  M     
Sbjct: 181 ENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHD 240

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWAL----MITCYTRKGELEKARE 129
           + N  + +++++   H D  K  R +   + +    S       ++  Y   G   +A  
Sbjct: 241 EVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANL 300

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK-------------------- 169
           +F  +P K D   WN+++A +   G   +A  LL +M S                     
Sbjct: 301 VFKQMPTK-DLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPD 359

Query: 170 -------------------NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLD 210
                              N +  N+++S Y K GEM  + +    M  RDVV+WN ++ 
Sbjct: 360 FFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIG 419

Query: 211 GYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPI----- 261
           GY E +D D A   FQ +       N ++ V++LS     G +LE  +      +     
Sbjct: 420 GYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFE 479

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
            +    N++I  Y + G +  +  LF  +  RN ++W  M+         +E  +L+ +M
Sbjct: 480 SDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKM 539

Query: 322 PYKNIAAQ----TAMISGYVQNKRMDEANQIFD---KIG-THDVVCWNVMIKGYAQCGRM 373
               ++      +  +S   +   ++E  Q+     K+G  HD   +N     Y++CG +
Sbjct: 540 RSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEI 599

Query: 374 DEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433
            E + +    VN+ + +WN +I+   +    ++    F E                    
Sbjct: 600 GEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHE-------------------- 639

Query: 434 EFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS-GYVNDLFV 492
                       M + G K  H T    L+AC+H   +  G   + +  +  G    +  
Sbjct: 640 ------------MLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEH 687

Query: 493 GNSLITMYAKCGRIQNAELLFKD--ADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
              +I +  + GR+  AE         P D++ W SL+A   I+GN     K  E +
Sbjct: 688 CICVIDLLGRSGRLAEAETFISKMPMKPNDLV-WRSLLASCKIHGNLDRGRKAAENL 743


>gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  344 bits (883), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 228/720 (31%), Positives = 354/720 (49%), Gaps = 89/720 (12%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           I     Q + V  N +++ Y K G + DARK F+ M  R++VSW  MI+GY  N +  +A
Sbjct: 106 ILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRSVVSWTIMISGYSQNGQENDA 165

Query: 97  RELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAG 149
             ++ +M R    PD  ++  +I      G+++   +L   +            NA+++ 
Sbjct: 166 IIMYIQMLRSGYFPDQLTFGSIIKACCIAGDIDLGGQLHGHVIKSGYDHHLIAQNALISM 225

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML 209
           Y K G    A  +   + +K+++SW SM++G+T+ G    A   F  M  + V   N  +
Sbjct: 226 YTKFGQIAHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFI 285

Query: 210 DGYVELDDLDSAWKFFQKIPE---------------QNVVSWVTMLSGYARNGRMLEARR 254
            G V      SA +   K PE               +NV +  ++   YA+ G +  A+R
Sbjct: 286 FGSVF-----SACRSLLK-PEFGRQIQGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAKR 339

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
            F Q+   ++V+WNA+IAA +    + EA   F +M     +                  
Sbjct: 340 AFYQIESPDLVSWNAIIAA-LANSDVNEAIYFFCQMIHMGLMP----------------- 381

Query: 315 RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV--VCWNVMIKGYAQCGR 372
               D + + N+    A  S    N+ M   + I  K+G   V  VC N ++  Y +C  
Sbjct: 382 ----DDITFLNLLC--ACGSPMTLNQGMQIHSYII-KMGLDKVAAVC-NSLLTMYTKCSN 433

Query: 373 MDEAINLFRQMV-NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFL 431
           + +A N+F+ +  N ++V+WN +++  +Q +Q  +A ++F+                   
Sbjct: 434 LHDAFNVFKDISENGNLVSWNAILSACSQHKQPGEAFRLFK------------------- 474

Query: 432 QNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLF 491
                        LM     K D+ T+   L  CA L +L++G Q+H  ++KSG V D+ 
Sbjct: 475 -------------LMLFSENKPDNITITTILGTCAELVSLEVGNQVHCFSVKSGLVVDVS 521

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
           V N LI MYAKCG +++A  +F      D++SW+SLI GYA  G   EA+ LF  M   G
Sbjct: 522 VSNRLIDMYAKCGLLKHARYVFDSTQNPDIVSWSSLIVGYAQFGLGQEALNLFRMMRNLG 581

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
           V P+ VT++GVLSACSH+GLV+ G  L+  M     I P  EH +CM+DLL+RAG L EA
Sbjct: 582 VQPNEVTYLGVLSACSHIGLVEEGWHLYNTMEIELGIPPTREHVSCMVDLLARAGCLYEA 641

Query: 612 FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEA 671
              +K     P+  +W TLL +C+ H N+ +   A E + +L+P  ++   LLSN+HA A
Sbjct: 642 ENFIKKTGFDPDITMWKTLLASCKTHGNVDIAERAAENILKLDPSNSAALVLLSNIHASA 701

Query: 672 GRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           G W EV ++R  M+  G QK PG SWIEVK+QIH F S D    +   I   L+ L  Q+
Sbjct: 702 GNWKEVARLRNLMKQMGVQKVPGQSWIEVKDQIHVFFSEDSSHPQRGNIYTMLEDLWLQM 761



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 140/606 (23%), Positives = 253/606 (41%), Gaps = 117/606 (19%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR-- 75
           QN  +   GK G +++A K F  M  ++ V++  MIS Y++NG+ NDA  ++ QM +   
Sbjct: 118 QNHILNMYGKCGSLKDARKAFDTMQLRSVVSWTIMISGYSQNGQENDAIIMYIQMLRSGY 177

Query: 76  --NLVSWNSMI-----------AGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKG 122
             + +++ S+I            G LH   +K         +   L +   +I+ YT+ G
Sbjct: 178 FPDQLTFGSIIKACCIAGDIDLGGQLHGHVIKSG-------YDHHLIAQNALISMYTKFG 230

Query: 123 ELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM-------PS------- 168
           ++  A ++F ++  K D   W +M+ G+ ++G   EA  L   M       P+       
Sbjct: 231 QIAHASDVFTMISTK-DLISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFGSV 289

Query: 169 --------------------------KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV 202
                                     +N+ +  S+   Y K G +  A + F  +E  D+
Sbjct: 290 FSACRSLLKPEFGRQIQGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAKRAFYQIESPDL 349

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG------RMLEARRLF 256
           VSWN ++      D  ++ + F Q I    +   +T L+     G      + ++     
Sbjct: 350 VSWNAIIAALANSDVNEAIYFFCQMIHMGLMPDDITFLNLLCACGSPMTLNQGMQIHSYI 409

Query: 257 DQMPIRNVVA-WNAMIAAYVQRGQIEEAARLFIEMPER-NPVSWTTMIDGYVRIAKLDEA 314
            +M +  V A  N+++  Y +   + +A  +F ++ E  N VSW  ++    +  +  EA
Sbjct: 410 IKMGLDKVAAVCNSLLTMYTKCSNLHDAFNVFKDISENGNLVSWNAILSACSQHKQPGEA 469

Query: 315 RRLLDQMPYK-----NIAAQTAMISGYVQNKRMDEANQIFD---KIG-THDVVCWNVMIK 365
            RL   M +      NI   T ++    +   ++  NQ+     K G   DV   N +I 
Sbjct: 470 FRLFKLMLFSENKPDNITI-TTILGTCAELVSLEVGNQVHCFSVKSGLVVDVSVSNRLID 528

Query: 366 GYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
            YA+CG +  A  +F    N DIV+W+++I GYAQ                         
Sbjct: 529 MYAKCGLLKHARYVFDSTQNPDIVSWSSLIVGYAQF------------------------ 564

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHH-LAIKS 484
              G  Q     +AL +F +M   G + +  T    LSAC+H+  ++ G  +++ + I+ 
Sbjct: 565 ---GLGQ-----EALNLFRMMRNLGVQPNEVTYLGVLSACSHIGLVEEGWHLYNTMEIEL 616

Query: 485 GYVNDLFVGNSLITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAINGNATEAIK 542
           G        + ++ + A+ G +  AE   K    DP D+  W +L+A    +GN   A +
Sbjct: 617 GIPPTREHVSCMVDLLARAGCLYEAENFIKKTGFDP-DITMWKTLLASCKTHGNVDIAER 675

Query: 543 LFEEMV 548
             E ++
Sbjct: 676 AAENIL 681



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 117/259 (45%), Gaps = 35/259 (13%)

Query: 421 VSWNALISGFLQNEFHLDALKIFVL-MTQEGKKADHSTLACALSACAHLAALQLGRQIHH 479
           +S N+ I+   + + + +AL  F   +     + + ST    + AC ++ +L+ G++IH 
Sbjct: 45  LSTNSYINLMCKQQHYREALDTFNFHLKNSSIQLEPSTYVNLILACTNVRSLKYGKRIHD 104

Query: 480 LAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATE 539
             +KS    DL + N ++ MY KCG +++A   F       V+SW  +I+GY+ NG   +
Sbjct: 105 HILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRSVVSWTIMISGYSQNGQEND 164

Query: 540 AIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF---------------ECMTE 584
           AI ++ +M+  G  PD +TF  ++ AC   G +D G +L                  +  
Sbjct: 165 AIIMYIQMLRSGYFPDQLTFGSIIKACCIAGDIDLGGQLHGHVIKSGYDHHLIAQNALIS 224

Query: 585 VYAIEPLVEH---------------YACMIDLLSRAGRLDEAFEMVKGM----KIKPNAG 625
           +Y     + H               +A MI   ++ G   EA  + + M      +PN  
Sbjct: 225 MYTKFGQIAHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEF 284

Query: 626 IWGTLLGACRMHQNIKLGR 644
           I+G++  ACR     + GR
Sbjct: 285 IFGSVFSACRSLLKPEFGR 303


>gi|357487403|ref|XP_003613989.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
 gi|355515324|gb|AES96947.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
          Length = 828

 Score =  344 bits (883), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 223/755 (29%), Positives = 368/755 (48%), Gaps = 72/755 (9%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFD- 101
             N +    ++ +Y++ G +  +R +F   P  +   ++ +I  +L N   +E   LF+ 
Sbjct: 30  HNNPLASTKLLESYSQMGSLQSSRLVFYTHPSPDSFMFSVLIKCHLWNHLFREVLSLFNH 89

Query: 102 ------KMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAK 152
                 K+ +   F +  +I   T  GEL   R+L   +      ED     ++V  Y +
Sbjct: 90  HIQMGSKLTQNCAFLYPSVIRAVTGVGELIVGRKLHGRILKSGFCEDRVIGTSLVGMYGE 149

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY 212
           +    +AKK+ D M  +++V W+S++S Y +NG      + F +M    +   ++ML   
Sbjct: 150 LCFLRDAKKVFDEMCVRDLVLWSSIISCYVENGVYREGLEMFRSMICEGIRPDSVMLLSV 209

Query: 213 VE----LDDLDSAWKFFQKIPEQNVV-------SWVTMLSGYARNGRMLEARRLFDQMPI 261
            E    +  L  A      +  + +V       S + M   Y++ G +  A+RLF+ +  
Sbjct: 210 AEACGKIGCLRLAKSVHGYVMREGMVGDGSLSNSLIVM---YSQCGYLCRAKRLFECIDD 266

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARR- 316
           R+   W +MI+AY Q    EEA  +FI+M     E N V+  ++++   R+ +L E +  
Sbjct: 267 RSTSCWTSMISAYNQNECFEEALDVFIKMQDSEVEPNDVTMISVLNSCARLGRLKEGKSV 326

Query: 317 ----LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGR 372
               L + M    +    A+I  Y    +M    ++   IG  ++V WN +I  YA+ G 
Sbjct: 327 HCFVLRNAMGVTGLDLGPALIDFYSACWKMSSCEKLLHSIGNENIVSWNTLISFYAREGL 386

Query: 373 MDEAINLFRQMVNKDIV--------------------------------------TWNTM 394
            DEA+  F  MV K I+                                        N++
Sbjct: 387 NDEAMAFFACMVAKGIMPDSFSLASSISASASSGSIQFGQQIHGHVMKRGFFDEFVQNSL 446

Query: 395 IAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
           +  Y++      A  IF ++ K ++ V+WN +I GF QN   ++AL +F  M +   + +
Sbjct: 447 MDMYSKCGFASSAYTIFNKI-KHKSIVAWNCMICGFSQNGISVEALSLFDEMFKNRLEIN 505

Query: 455 HSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
             T   A+ AC++L  L  G+ IHH  I +G  NDL++  +L+ MYAKCG +Q A+ +F 
Sbjct: 506 KVTFLSAIQACSNLGYLDKGKWIHHKIIVTGNQNDLYIDTALVDMYAKCGDLQTAQKVFD 565

Query: 515 DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574
                 V+SW+++IA + I+G    A  LF +MV+  + P+ VTF+ +LSAC H G V  
Sbjct: 566 SIVEKSVVSWSTMIAAHGIHGQINAATSLFHKMVLSNIKPNEVTFMNILSACRHAGSVKE 625

Query: 575 GLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGAC 634
           G   F  M + Y I P VEH+A ++DLLSRAG ++ A+E++K ++    A IWG LL  C
Sbjct: 626 GKFYFNTMRDYYGIVPNVEHFASIVDLLSRAGDINGAYEIIKSIRTPVAASIWGALLNGC 685

Query: 635 RMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPG 694
           R++  + +     E+L  +    T  Y LLSN++AE G W E  KVR  MEG G +K PG
Sbjct: 686 RIYGRMDMIEYIAEELGGISTDDTGYYTLLSNIYAEGGNWYESRKVRSKMEGMGLKKVPG 745

Query: 695 CSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAA 729
            S +E+  +I+ F SGD  + +  EIC  L+   +
Sbjct: 746 YSTVEIDRKIYRFGSGDTSEWQMKEICMFLENFQS 780



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 136/606 (22%), Positives = 246/606 (40%), Gaps = 114/606 (18%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMI------ 84
           + +A K+F +M  ++ V ++S+IS Y +NG   +  ++F  M    +   + M+      
Sbjct: 153 LRDAKKVFDEMCVRDLVLWSSIISCYVENGVYREGLEMFRSMICEGIRPDSVMLLSVAEA 212

Query: 85  ---AGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTA 141
               G L   K      + + M      S +L++  Y++ G L +A+ LF+ + ++  T+
Sbjct: 213 CGKIGCLRLAKSVHGYVMREGMVGDGSLSNSLIVM-YSQCGYLCRAKRLFECIDDRS-TS 270

Query: 142 CWNAMVAGYAKIGNYNEAK----KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF--FE 195
           CW +M++ Y +   + EA     K+ D+    N V+  S+L+   + G +        F 
Sbjct: 271 CWTSMISAYNQNECFEEALDVFIKMQDSEVEPNDVTMISVLNSCARLGRLKEGKSVHCFV 330

Query: 196 AMEERDVVSWNL---MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA 252
                 V   +L   ++D Y     + S  K    I  +N+VSW T++S YAR G   EA
Sbjct: 331 LRNAMGVTGLDLGPALIDFYSACWKMSSCEKLLHSIGNENIVSWNTLISFYAREGLNDEA 390

Query: 253 RRLFDQMPIRNVV--------------------------------------AWNAMIAAY 274
              F  M  + ++                                        N+++  Y
Sbjct: 391 MAFFACMVAKGIMPDSFSLASSISASASSGSIQFGQQIHGHVMKRGFFDEFVQNSLMDMY 450

Query: 275 VQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN--------- 325
            + G    A  +F ++  ++ V+W  MI G+ +     EA  L D+M +KN         
Sbjct: 451 SKCGFASSAYTIFNKIKHKSIVAWNCMICGFSQNGISVEALSLFDEM-FKNRLEINKVTF 509

Query: 326 -IAAQTAMISGYVQNKRMDEANQIFDKI----GTHDVVCWNVMIKGYAQCGRMDEAINLF 380
             A Q     GY     +D+   I  KI      +D+     ++  YA+CG +  A  +F
Sbjct: 510 LSAIQACSNLGY-----LDKGKWIHHKIIVTGNQNDLYIDTALVDMYAKCGDLQTAQKVF 564

Query: 381 RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
             +V K +V+W+TMIA +    Q++ A  +F +M           ++S    NE      
Sbjct: 565 DSIVEKSVVSWSTMIAAHGIHGQINAATSLFHKM-----------VLSNIKPNEV----- 608

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGR-QIHHLAIKSGYVNDLFVGNSLITM 499
                           T    LSAC H  +++ G+   + +    G V ++    S++ +
Sbjct: 609 ----------------TFMNILSACRHAGSVKEGKFYFNTMRDYYGIVPNVEHFASIVDL 652

Query: 500 YAKCGRIQNA-ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
            ++ G I  A E++     PV    W +L+ G  I G       + EE  + G++ D   
Sbjct: 653 LSRAGDINGAYEIIKSIRTPVAASIWGALLNGCRIYGRMDMIEYIAEE--LGGISTDDTG 710

Query: 559 FIGVLS 564
           +  +LS
Sbjct: 711 YYTLLS 716



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 92/417 (22%), Positives = 169/417 (40%), Gaps = 100/417 (23%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP---- 73
            N  I    + G +  A ++F  +  ++T  + SMISAY +N    +A  +F +M     
Sbjct: 241 SNSLIVMYSQCGYLCRAKRLFECIDDRSTSCWTSMISAYNQNECFEEALDVFIKMQDSEV 300

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDL 133
           + N V+  S++       ++KE + +   + R      A+ +T       L+    L D 
Sbjct: 301 EPNDVTMISVLNSCARLGRLKEGKSVHCFVLRN-----AMGVT------GLDLGPALIDF 349

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
                 +ACW             +  +KLL ++ ++NIVSWN+++S Y + G    A  F
Sbjct: 350 Y-----SACWKM-----------SSCEKLLHSIGNENIVSWNTLISFYAREGLNDEAMAF 393

Query: 194 FEAMEERDVVS--------------------------------------WNLMLDGYVEL 215
           F  M  + ++                                        N ++D Y + 
Sbjct: 394 FACMVAKGIMPDSFSLASSISASASSGSIQFGQQIHGHVMKRGFFDEFVQNSLMDMYSKC 453

Query: 216 DDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
               SA+  F KI  +++V+W  M+ G+++NG  +EA  LFD+M                
Sbjct: 454 GFASSAYTIFNKIKHKSIVAWNCMICGFSQNGISVEALSLFDEM---------------- 497

Query: 276 QRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR----RLLDQMPYKNIAAQTA 331
                      F    E N V++ + I     +  LD+ +    +++      ++   TA
Sbjct: 498 -----------FKNRLEINKVTFLSAIQACSNLGYLDKGKWIHHKIIVTGNQNDLYIDTA 546

Query: 332 MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
           ++  Y +   +  A ++FD I    VV W+ MI  +   G+++ A +LF +MV  +I
Sbjct: 547 LVDMYAKCGDLQTAQKVFDSIVEKSVVSWSTMIAAHGIHGQINAATSLFHKMVLSNI 603



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 115/252 (45%), Gaps = 19/252 (7%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F QN  +    K G    A  IF+++  K+ V +N MI  +++NG   +A  LF++M + 
Sbjct: 441 FVQNSLMDMYSKCGFASSAYTIFNKIKHKSIVAWNCMICGFSQNGISVEALSLFDEMFKN 500

Query: 76  NL----VSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKA 127
            L    V++ S I    +   + + + +  K+     + DL+    ++  Y + G+L+ A
Sbjct: 501 RLEINKVTFLSAIQACSNLGYLDKGKWIHHKIIVTGNQNDLYIDTALVDMYAKCGDLQTA 560

Query: 128 RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTK 183
           +++FD +  K   + W+ M+A +   G  N A  L   M   NI    V++ ++LS    
Sbjct: 561 QKVFDSIVEKSVVS-WSTMIAAHGIHGQINAATSLFHKMVLSNIKPNEVTFMNILSACRH 619

Query: 184 NGEMHLASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-WV 237
            G +     +F  M +      +V  +  ++D      D++ A++  + I      S W 
Sbjct: 620 AGSVKEGKFYFNTMRDYYGIVPNVEHFASIVDLLSRAGDINGAYEIIKSIRTPVAASIWG 679

Query: 238 TMLSGYARNGRM 249
            +L+G    GRM
Sbjct: 680 ALLNGCRIYGRM 691


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 201/625 (32%), Positives = 335/625 (53%), Gaps = 43/625 (6%)

Query: 118 YTRKGELEKARELFDLLPNKE-DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNS 176
           + + G+LE A EL  +    E +T  +++++   A + ++ + KK+   + S ++    +
Sbjct: 76  FCQLGDLENAMELICMCKKSELETKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEA 135

Query: 177 M----LSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQN 232
           +    +S Y   G++    + F+ ME+++V  WN M+  Y ++ D   +   F+ + E+ 
Sbjct: 136 LGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKG 195

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE 292
           +              R   A  LFD++  R+V++WN+MI+ YV  G  E    ++ +M  
Sbjct: 196 I-----------EGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMY 244

Query: 293 RN-PVSWTTMID--------GYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMD 343
               V   T+I         G + + K   +  +      + I     ++  Y +   +D
Sbjct: 245 LGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFE-RRINFSNTLLDMYSKCGDLD 303

Query: 344 EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYA 399
            A ++F+K+G  +VV W  MI GY + GR D AI L +QM    V  D+V   +++   A
Sbjct: 304 GALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACA 363

Query: 400 QIRQMDDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLM---------T 447
           +   +D+   + + +       N    NAL+  + +      A  +F  M         T
Sbjct: 364 RSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNT 423

Query: 448 QEGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI 506
             G+ K D  T+AC L ACA L+AL+ G++IH   +++GY +D  V N+L+ +Y KCG +
Sbjct: 424 MIGELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVL 483

Query: 507 QNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
             A LLF      D++SW  +IAGY ++G   EAI  F EM   G+ PD V+FI +L AC
Sbjct: 484 GLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYAC 543

Query: 567 SHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGI 626
           SH GL++ G + F  M   + IEP +EHYACM+DLLSR G L +A+E ++ + I P+A I
Sbjct: 544 SHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATI 603

Query: 627 WGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEG 686
           WG LL  CR + +I+L     E++ ELEP+ +  Y LL+N++AEA +W+EV+++R  +  
Sbjct: 604 WGALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGK 663

Query: 687 SGAQKQPGCSWIEVKNQIHTFLSGD 711
            G +K PGCSWIE+K +++ F+SG+
Sbjct: 664 QGLRKNPGCSWIEIKGKVNLFVSGN 688



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 182/408 (44%), Gaps = 56/408 (13%)

Query: 20  KKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG------------------- 60
           K ++     G ++E  ++F  M +KN   +N M+S YAK G                   
Sbjct: 139 KLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEG 198

Query: 61  -RVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMI 115
            R   A +LF+++  R+++SWNSMI+GY+ N   +    ++ +M       DL +   ++
Sbjct: 199 KRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVL 258

Query: 116 TCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV 172
                 G L   + +  L      +      N ++  Y+K G+ + A ++ + M  +N+V
Sbjct: 259 VGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVV 318

Query: 173 SWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKI 228
           SW SM++GYT++G    A K  + ME+     DVV+   +L        LD+       I
Sbjct: 319 SWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYI 378

Query: 229 P----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA 284
                E N+     ++  YA+ G M  A  +F  M ++++++WN MI      G+++  +
Sbjct: 379 KANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI------GELKPDS 432

Query: 285 R-LFIEMPERNPVSWTTM---IDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340
           R +   +P    +S       I GY+        R + +           A++  YV+  
Sbjct: 433 RTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVAN-----------ALVDLYVKCG 481

Query: 341 RMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
            +  A  +FD I + D+V W VMI GY   G  +EAI  F +M +  I
Sbjct: 482 VLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGI 529



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 152/330 (46%), Gaps = 39/330 (11%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL 88
           G+   ++ I S   ++   + N+++  Y+K G ++ A ++FE+M +RN+VSW SMIAGY 
Sbjct: 270 GKAVHSLAIKSSFERRINFS-NTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYT 328

Query: 89  HNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTA 141
            + +   A +L  +M     + D+ +   ++    R G L+  +++ D +     + +  
Sbjct: 329 RDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLF 388

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSM--------------------LSGY 181
             NA++  YAK G+   A  +   M  K+I+SWN+M                    LS  
Sbjct: 389 VCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSAL 448

Query: 182 TKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
            +  E+H          +R V   N ++D YV+   L  A   F  IP +++VSW  M++
Sbjct: 449 ERGKEIHGYILRNGYSSDRHVA--NALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIA 506

Query: 242 GYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMP-----E 292
           GY  +G   EA   F++M    +    V++ +++ A    G +E+  R F  M      E
Sbjct: 507 GYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIE 566

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
                +  M+D   R   L +A   ++ +P
Sbjct: 567 PKLEHYACMVDLLSRTGNLSKAYEFIETLP 596



 Score = 98.2 bits (243), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 153/374 (40%), Gaps = 71/374 (18%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP---- 73
            N  +    K G ++ A+++F +M ++N V++ SMI+ Y ++GR + A KL +QM     
Sbjct: 289 SNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGV 348

Query: 74  -----------------------------------QRNLVSWNSMIAGYLHNDKVKEARE 98
                                              + NL   N+++  Y     ++ A  
Sbjct: 349 KLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANS 408

Query: 99  LFDKMFRPDLFSWALMI---------------TCYTRKGELEKARELFD-LLPN--KEDT 140
           +F  M   D+ SW  MI                C +    LE+ +E+   +L N    D 
Sbjct: 409 VFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSA-LERGKEIHGYILRNGYSSDR 467

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME-- 198
              NA+V  Y K G    A+ L D +PSK++VSW  M++GY  +G  + A   F  M   
Sbjct: 468 HVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDA 527

Query: 199 --ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-----EQNVVSWVTMLSGYARNGRMLE 251
             E D VS+  +L        L+  W+FF  +      E  +  +  M+   +R G + +
Sbjct: 528 GIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSK 587

Query: 252 ARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARL---FIEMPERNPVSWTTMIDGYVR 307
           A    + +PI  +   W A++        IE A ++     E+   N   +  + + Y  
Sbjct: 588 AYEFIETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYAE 647

Query: 308 IAKLDEARRLLDQM 321
             K +E +RL +++
Sbjct: 648 AEKWEEVKRLREKI 661



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 122/299 (40%), Gaps = 72/299 (24%)

Query: 10  NKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISA-------------- 55
           N  S +F  N  +    K G +E A  +FS M  K+ +++N+MI                
Sbjct: 382 NMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPA 441

Query: 56  -----------------------------------YAKNGRVNDARKLFEQMPQRNLVSW 80
                                              Y K G +  AR LF+ +P ++LVSW
Sbjct: 442 CASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSW 501

Query: 81  NSMIAGY-LH---NDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKA-------RE 129
             MIAGY +H   N+ +    E+ D    PD  S+  ++   +  G LE+        + 
Sbjct: 502 TVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKN 561

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNGEMH 188
            F++ P  E  AC   MV   ++ GN ++A + ++ +P + +   W ++L G     ++ 
Sbjct: 562 DFNIEPKLEHYAC---MVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIE 618

Query: 189 LASKFFE---AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV-----VSWVTM 239
           LA K  E    +E  +   + L+ + Y E +  +   +  +KI +Q +      SW+ +
Sbjct: 619 LAEKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEI 677


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 202/625 (32%), Positives = 334/625 (53%), Gaps = 43/625 (6%)

Query: 118 YTRKGELEKARELFDLLPNKE-DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNS 176
           + + G+LE A EL  +    E +T  + +++   A + ++ + KK+   + S ++    +
Sbjct: 76  FCQLGDLENAMELICMCQKSELETKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGA 135

Query: 177 M----LSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQN 232
           +    +S Y   G++    + F+ ME+++V  WN M+  Y ++ D   +   F+ + E+ 
Sbjct: 136 LGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKG 195

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE 292
           +              R   A  LFD++  R+V++WN+MI+ YV  G  E    ++ +M  
Sbjct: 196 I-----------EGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMY 244

Query: 293 RN-PVSWTTMID--------GYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMD 343
               V   T+I         G + + K   +  +      + I     ++  Y +   +D
Sbjct: 245 LGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFE-RRINFSNTLLDMYSKCGDLD 303

Query: 344 EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYA 399
            A ++F+K+G  +VV W  MI GY + GR D AI L +QM    V  D+V   +++   A
Sbjct: 304 GALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACA 363

Query: 400 QIRQMDDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLM---------T 447
           +   +D+   + + +       N    NAL+  + +      A  +F  M         T
Sbjct: 364 RSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNT 423

Query: 448 QEGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI 506
             G+ K D  T+AC L ACA L+AL+ G++IH   +++GY +D  V N+L+ +Y KCG +
Sbjct: 424 MIGELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVL 483

Query: 507 QNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
             A LLF      D++SW  +IAGY ++G   EAI  F EM   G+ PD V+FI +L AC
Sbjct: 484 GLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYAC 543

Query: 567 SHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGI 626
           SH GL++ G + F  M   + IEP +EHYACM+DLLSR G L +A+E ++ + I P+A I
Sbjct: 544 SHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATI 603

Query: 627 WGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEG 686
           WG LL  CR + +I+L     E++ ELEP+ T  Y LL+N++AEA +W+EV+++R  +  
Sbjct: 604 WGALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKIGK 663

Query: 687 SGAQKQPGCSWIEVKNQIHTFLSGD 711
            G +K PGCSWIE+K +++ F+SG+
Sbjct: 664 QGLRKNPGCSWIEIKGKVNLFVSGN 688



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 104/408 (25%), Positives = 182/408 (44%), Gaps = 56/408 (13%)

Query: 20  KKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG------------------- 60
           K ++     G ++E  ++F  M +KN   +N M+S YAK G                   
Sbjct: 139 KLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEG 198

Query: 61  -RVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMI 115
            R   A +LF+++  R+++SWNSMI+GY+ N   +    ++ +M       DL +   ++
Sbjct: 199 KRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVL 258

Query: 116 TCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV 172
                 G L   + +  L      +      N ++  Y+K G+ + A ++ + M  +N+V
Sbjct: 259 VGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVV 318

Query: 173 SWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKI 228
           SW SM++GYT++G    A K  + ME+     DVV+   +L        LD+       I
Sbjct: 319 SWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYI 378

Query: 229 P----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA 284
                E N+     ++  YA+ G M  A  +F  M ++++++WN MI      G+++  +
Sbjct: 379 KANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI------GELKPDS 432

Query: 285 R-LFIEMPERNPVSWTTM---IDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340
           R +   +P    +S       I GY+        R + +           A++  YV+  
Sbjct: 433 RTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVAN-----------ALVDLYVKCG 481

Query: 341 RMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
            +  A  +FD I + D+V W VMI GY   G  +EAI  F +M +  I
Sbjct: 482 VLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGI 529



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 152/330 (46%), Gaps = 39/330 (11%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL 88
           G+   ++ I S   ++   + N+++  Y+K G ++ A ++FE+M +RN+VSW SMIAGY 
Sbjct: 270 GKAVHSLAIKSSFERRINFS-NTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYT 328

Query: 89  HNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTA 141
            + +   A +L  +M     + D+ +   ++    R G L+  +++ D +     + +  
Sbjct: 329 RDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLF 388

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSM--------------------LSGY 181
             NA++  YAK G+   A  +   M  K+I+SWN+M                    LS  
Sbjct: 389 VCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSAL 448

Query: 182 TKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
            +  E+H          +R V   N ++D YV+   L  A   F  IP +++VSW  M++
Sbjct: 449 ERGKEIHGYILRNGYSSDRHVA--NALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIA 506

Query: 242 GYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMP-----E 292
           GY  +G   EA   F++M    +    V++ +++ A    G +E+  R F  M      E
Sbjct: 507 GYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIE 566

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
                +  M+D   R   L +A   ++ +P
Sbjct: 567 PKLEHYACMVDLLSRTGNLSKAYEFMETLP 596



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 153/374 (40%), Gaps = 71/374 (18%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP---- 73
            N  +    K G ++ A+++F +M ++N V++ SMI+ Y ++GR + A KL +QM     
Sbjct: 289 SNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGV 348

Query: 74  -----------------------------------QRNLVSWNSMIAGYLHNDKVKEARE 98
                                              + NL   N+++  Y     ++ A  
Sbjct: 349 KLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANS 408

Query: 99  LFDKMFRPDLFSWALMI---------------TCYTRKGELEKARELFD-LLPN--KEDT 140
           +F  M   D+ SW  MI                C +    LE+ +E+   +L N    D 
Sbjct: 409 VFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSA-LERGKEIHGYILRNGYSSDR 467

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME-- 198
              NA+V  Y K G    A+ L D +PSK++VSW  M++GY  +G  + A   F  M   
Sbjct: 468 HVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDA 527

Query: 199 --ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-----EQNVVSWVTMLSGYARNGRMLE 251
             E D VS+  +L        L+  W+FF  +      E  +  +  M+   +R G + +
Sbjct: 528 GIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSK 587

Query: 252 ARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARL---FIEMPERNPVSWTTMIDGYVR 307
           A    + +PI  +   W A++        IE A ++     E+   N   +  + + Y  
Sbjct: 588 AYEFMETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAE 647

Query: 308 IAKLDEARRLLDQM 321
             K +E +RL +++
Sbjct: 648 AEKWEEVKRLREKI 661



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 122/299 (40%), Gaps = 72/299 (24%)

Query: 10  NKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISA-------------- 55
           N  S +F  N  +    K G +E A  +FS M  K+ +++N+MI                
Sbjct: 382 NMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPA 441

Query: 56  -----------------------------------YAKNGRVNDARKLFEQMPQRNLVSW 80
                                              Y K G +  AR LF+ +P ++LVSW
Sbjct: 442 CASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSW 501

Query: 81  NSMIAGY-LH---NDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKA-------RE 129
             MIAGY +H   N+ +    E+ D    PD  S+  ++   +  G LE+        + 
Sbjct: 502 TVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKN 561

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNGEMH 188
            F++ P  E  AC   MV   ++ GN ++A + ++ +P + +   W ++L G     ++ 
Sbjct: 562 DFNIEPKLEHYAC---MVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIE 618

Query: 189 LASKFFE---AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV-----VSWVTM 239
           LA K  E    +E  +   + L+ + Y E +  +   +  +KI +Q +      SW+ +
Sbjct: 619 LAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEI 677


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 194/568 (34%), Positives = 305/568 (53%), Gaps = 54/568 (9%)

Query: 218 LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM------PIRNVVAWNAMI 271
           L  A   F+ I E N +SW TM+ G+A +   + A  L+  M      P  N   +  + 
Sbjct: 28  LPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSP--NSYTFPFLF 85

Query: 272 AAYVQRGQIEEAARLFIEMPERNPVS----WTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
            +  +    +E  ++  ++ +          T++I  Y +   +++A ++ D   ++++ 
Sbjct: 86  KSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVV 145

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD 387
           + TAMI+GY     MD+A ++FD+I   DVV WN MI GYA+ GR  EA+ LF +M+  D
Sbjct: 146 SYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMD 205

Query: 388 --------------------------IVTW-------------NTMIAGYAQIRQMDDAV 408
                                     I +W             N +I  Y++  +M+ A 
Sbjct: 206 VKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAH 265

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
            +FE + + ++ +SWN LI G+     H +AL +F  M + G+  +  T+   L ACAHL
Sbjct: 266 GLFEGL-QYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHL 324

Query: 469 AALQLGRQIHHLAIKS--GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNS 526
            A+ +GR IH    K   G + +  +  SLI MYAKCG I+ A  +F       + S N+
Sbjct: 325 GAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNA 384

Query: 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVY 586
           +I G+A++G A  A  L   M  +G+ PD +TF+G+LSACSH GL D G K+F+ MT  Y
Sbjct: 385 MIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDY 444

Query: 587 AIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIA 646
            IEP +EHY CMIDLL R+G   EA E++  M ++P+  IWG+LL AC++H+N++LG + 
Sbjct: 445 RIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELI 504

Query: 647 VEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHT 706
            +KL ++EP+    Y LLSN++A + RWD+V +VR  +   G +K PGCS IE+ + +H 
Sbjct: 505 AQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHE 564

Query: 707 FLSGDPKQCRTAEICNTLKTLAAQIRNT 734
           FL GD    +  EI   L+ + + +  T
Sbjct: 565 FLIGDKFHPQNKEIYKMLEEIDSLLAET 592



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 159/321 (49%), Gaps = 21/321 (6%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           I+   ++G VE+A K+F   S ++ V+Y +MI+ YA  G ++ A+K+F+++P +++VSWN
Sbjct: 120 ISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWN 179

Query: 82  SMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
           +MI+GY    + KEA ELF++M     +PD  + A +++  T  G +E  R++   + N 
Sbjct: 180 AMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNH 239

Query: 138 ---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
               +    NA++  Y+K G    A  L + +  K+++SWN+++ GY        A   F
Sbjct: 240 GFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVF 299

Query: 195 EAM----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ------NVVSWVTMLSGYA 244
           + M    E  + V+   +L     L  +D        I ++      N     +++  YA
Sbjct: 300 QEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYA 359

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTT 300
           + G +  A ++FD +  +++ + NAMI  +   G+ + A  L   M     E + +++  
Sbjct: 360 KCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVG 419

Query: 301 MIDGYVRIAKLDEARRLLDQM 321
           ++         D  R++   M
Sbjct: 420 LLSACSHAGLSDLGRKIFKSM 440



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 128/552 (23%), Positives = 219/552 (39%), Gaps = 118/552 (21%)

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTR 120
           A  +F+ + + N +SWN+MI G+  +     A  L+  M      P+ +++  +     +
Sbjct: 31  AISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAK 90

Query: 121 KGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG 180
               ++ +++                   +A+I  Y           + ++    S++S 
Sbjct: 91  SKAAQEGKQI-------------------HAQILKYG---------LTVDLHVHTSLISM 122

Query: 181 YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
           Y +NG +  A K F+    RDVVS+  M+ GY    ++D A K F +IP ++VVSW  M+
Sbjct: 123 YAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMI 182

Query: 241 SGYARNGRMLEARRLFDQM------PI--------------------RNVVAW------- 267
           SGYA  GR  EA  LF++M      P                     R + +W       
Sbjct: 183 SGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFG 242

Query: 268 ------NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
                 NA+I  Y + G++E A  LF  +  ++ +SW T+I GY  I    EA  +  +M
Sbjct: 243 SNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEM 302

Query: 322 ----PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH------DVVCWNVMIKGYAQCG 371
                  N     +++        +D    I   I         +      +I  YA+CG
Sbjct: 303 LKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCG 362

Query: 372 RMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFL 431
            ++ A  +F  ++NK + + N MI G+A   + D A  +   M K               
Sbjct: 363 NIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKK--------------- 407

Query: 432 QNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI-HHLAIKSGYVNDL 490
                            +G + D  T    LSAC+H     LGR+I   + +       L
Sbjct: 408 -----------------DGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKL 450

Query: 491 FVGNSLITMYAKCGRIQNAELLFKD--ADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
                +I +  + G  + AE L      +P  VI W SL+    I+ N  E  +L  + +
Sbjct: 451 EHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVI-WGSLLKACKIHKN-LELGELIAQKL 508

Query: 549 MEGVAPDPVTFI 560
           M+    +P +++
Sbjct: 509 MKIEPKNPGSYV 520



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 183/402 (45%), Gaps = 33/402 (8%)

Query: 26  GKSGRVEEAIKIFSQMSQKNTVT----YNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
            KS   +E  +I +Q+ +         + S+IS YA+NG V DA K+F+    R++VS+ 
Sbjct: 89  AKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYT 148

Query: 82  SMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN---KE 138
           +MI GY     + +A+++FD++   D+ SW  MI+ Y   G  ++A ELF+ +     K 
Sbjct: 149 AMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKP 208

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPS----KNIVSWNSMLSGYTKNGEMHLASKFF 194
           D +    +++     GN    +++   + +     N+   N+++  Y+K GEM  A   F
Sbjct: 209 DESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLF 268

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSGYARNGRML 250
           E ++ +DV+SWN ++ GY  ++    A   FQ++       N V+ +++L   A  G + 
Sbjct: 269 EGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAID 328

Query: 251 EARRLFDQMP------IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDG 304
             R +   +       I N     ++I  Y + G IE A ++F  +  ++  S   MI G
Sbjct: 329 IGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFG 388

Query: 305 YVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIGTHD---- 356
           +    + D A  LL +M    I         ++S        D   +IF  + T D    
Sbjct: 389 FAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSM-TLDYRIE 447

Query: 357 --VVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMI 395
             +  +  MI    + G   EA  L   M +  D V W +++
Sbjct: 448 PKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLL 489



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 156/334 (46%), Gaps = 28/334 (8%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V +    IT     G +++A K+F ++  K+ V++N+MIS YA+ GR  +A +LF +M +
Sbjct: 144 VVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMK 203

Query: 75  RNLVSWNSMIAGYL----HNDKVKEARELF----DKMFRPDLFSWALMITCYTRKGELEK 126
            ++    S +A  L    H+  V+  R++     +  F  +L     +I  Y++ GE+E+
Sbjct: 204 MDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMER 263

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA----KKLLDAMPSKNIVSWNSMLSGYT 182
           A  LF+ L  K D   WN ++ GYA I ++ EA    +++L    + N V+  S+L    
Sbjct: 264 AHGLFEGLQYK-DVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACA 322

Query: 183 KNGEMHLASKFFEAMEER------DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSW 236
             G + +       ++++      +      ++D Y +  ++++A + F  I  +++ S 
Sbjct: 323 HLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSC 382

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMP- 291
             M+ G+A +GR   A  L  +M    +    + +  +++A    G  +   ++F  M  
Sbjct: 383 NAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTL 442

Query: 292 ----ERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
               E     +  MID   R     EA  L++ M
Sbjct: 443 DYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSM 476


>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
          Length = 921

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 177/514 (34%), Positives = 295/514 (57%), Gaps = 14/514 (2%)

Query: 226 QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAAR 285
           +++P Q+  S  T L G  R+     A   F  MP R+   ++ +I A    G +     
Sbjct: 403 RRLPRQHHGSAPTALGGAPRD-----ALAAFSAMPRRDSFTYSFLIKALSAAG-VAPVRA 456

Query: 286 LFIEMPERNPVSWT----TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKR 341
           +   + +   V  T     +ID Y +     +AR++ D+MP +++ +    ++  V+   
Sbjct: 457 VHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGE 516

Query: 342 MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQI 401
           +    ++FD++   D V WN ++ GY + G ++ A  LF++M  +++V+W+TM++GY + 
Sbjct: 517 LAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKK 576

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
             ++ A  IF++M   +N V+W  ++S   Q     +A K+F  M +   + D + +   
Sbjct: 577 GDLEMARVIFDKM-PSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSI 635

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV-- 519
           L+ACA   +L LG++IH    K        V N+LI M+ KCG +  A+ +F D + V  
Sbjct: 636 LAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVF-DTETVQK 694

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
           D +SWNS+I G+A++G+  +A++LF +M  +G  PD VT I VLSAC+H+G VD G + F
Sbjct: 695 DSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHF 754

Query: 580 ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
             M   Y I P +EHY CMIDLL R G + EA +++K M  +PN  IWG+LL ACR+H+N
Sbjct: 755 SNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKN 814

Query: 640 IKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
           ++   IAV +LS+L+P     YA+LSN++AEAG+W ++ K R+ M+G+G+QK  G SW+E
Sbjct: 815 VEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVE 874

Query: 700 VKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           +    H F  GD K   + +I   +  L++ +++
Sbjct: 875 LNETFHEFTVGDRKHQDSDQISEMVDRLSSHVKH 908



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 106/336 (31%), Positives = 187/336 (55%), Gaps = 15/336 (4%)

Query: 94  KEARELFDKMFRPDLFSWALMITCYTRKG--ELEKARELFDLLPNKEDTACWNAMVAGYA 151
           ++A   F  M R D F+++ +I   +  G   +         L + EDT   NA++  Y+
Sbjct: 422 RDALAAFSAMPRRDSFTYSFLIKALSAAGVAPVRAVHSHVVKLGSVEDTFVGNALIDAYS 481

Query: 152 KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
           K G +++A+K+ D MP +++VSWN+ ++   + GE+    K F+ M E+D VSWN +LDG
Sbjct: 482 KNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDG 541

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
           Y +  ++++A++ FQ++PE+NVVSW TM+SGY + G +  AR +FD+MP +N+V W  M+
Sbjct: 542 YTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMV 601

Query: 272 AAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
           +A  Q+G ++EA +LF +M E     +  +  +++        L   +R+   +  +N+ 
Sbjct: 602 SACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLG 661

Query: 328 AQT----AMISGYVQNKRMDEANQIFD-KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
             T    A+I  + +   ++ A+ +FD +    D V WN +I G+A  G  D+A+ LF Q
Sbjct: 662 RSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQ 721

Query: 383 M----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           M     N D VT   +++    +  +D+  + F  M
Sbjct: 722 MKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNM 757



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/372 (29%), Positives = 186/372 (50%), Gaps = 47/372 (12%)

Query: 42  SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFD 101
           S ++T   N++I AY+KNG  +DARK+F++MP+R++VSWN+ +A  +   ++   R+LFD
Sbjct: 466 SVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFD 525

Query: 102 KMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKK 161
           +M   D  SW  ++  YT+ GE+E A ELF  +P + +   W+ MV+GY K G+   A+ 
Sbjct: 526 EMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPER-NVVSWSTMVSGYCKKGDLEMARV 584

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA 221
           + D MPSKN+V+W  M+S   + G +  A K F  M+E             VELD     
Sbjct: 585 IFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKE-----------ASVELD----- 628

Query: 222 WKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV----AWNAMIAAYVQR 277
                      V + V++L+  A +G +   +R+   +  RN+       NA+I  + + 
Sbjct: 629 -----------VAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKC 677

Query: 278 GQIEEAARLF-IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN----------- 325
           G +  A  +F  E  +++ VSW ++I G+      D+A  L  QM  +            
Sbjct: 678 GCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINV 737

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV- 384
           ++A T M  G+V   R   +N   D      +  +  MI    + G + EA++L + M  
Sbjct: 738 LSACTHM--GFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPW 795

Query: 385 NKDIVTWNTMIA 396
             + V W ++++
Sbjct: 796 EPNEVIWGSLLS 807



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 176/329 (53%), Gaps = 21/329 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            F  N  I    K+G   +A K+F +M +++ V++N+ ++A  + G +   RKLF++MP+
Sbjct: 470 TFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPE 529

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           ++ VSWN+++ GY    +V+ A ELF +M   ++ SW+ M++ Y +KG+LE AR +FD +
Sbjct: 530 KDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKM 589

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSMLSGYTKNGEMHLA 190
           P+K +   W  MV+  A+ G  +EA KL   M       ++ +  S+L+   ++G + L 
Sbjct: 590 PSK-NLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLG 648

Query: 191 SKFFEAMEERDVVS----WNLMLDGYVELDDLDSA-WKFFQKIPEQNVVSWVTMLSGYAR 245
            +    + +R++       N ++D + +   ++ A + F  +  +++ VSW +++ G+A 
Sbjct: 649 KRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAM 708

Query: 246 NGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERN----PV- 296
           +G   +A  LF QM  +    + V    +++A    G ++E  R F  M ER+    P  
Sbjct: 709 HGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNM-ERDYGIMPQI 767

Query: 297 -SWTTMIDGYVRIAKLDEARRLLDQMPYK 324
             +  MID   R   + EA  L+  MP++
Sbjct: 768 EHYGCMIDLLGRGGLIKEAVDLIKSMPWE 796



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 162/306 (52%), Gaps = 18/306 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  +  + + G +    K+F +M +K+TV++N+++  Y K G V  A +LF++MP+
Sbjct: 501 VVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPE 560

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN+VSW++M++GY     ++ AR +FDKM   +L +W +M++   +KG +++A +LF  +
Sbjct: 561 RNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQM 620

Query: 135 PNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS----WNSMLSGYTKNGEM 187
                  D A   +++A  A+ G+ +  K++   +  +N+       N+++  + K G +
Sbjct: 621 KEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCV 680

Query: 188 HLASKFFEAME-ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSG 242
           + A   F+    ++D VSWN ++ G+      D A + F ++ +Q    + V+ + +LS 
Sbjct: 681 NRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSA 740

Query: 243 YARNGRMLEARRLFDQMP-----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-ERNPV 296
               G + E RR F  M      +  +  +  MI    + G I+EA  L   MP E N V
Sbjct: 741 CTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEV 800

Query: 297 SWTTMI 302
            W +++
Sbjct: 801 IWGSLL 806


>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Vitis vinifera]
          Length = 464

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 163/409 (39%), Positives = 255/409 (62%), Gaps = 2/409 (0%)

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
           ++  QTA++  Y    ++ EA ++FD++   DV  W  MI  +A+ G M  A  LF +M 
Sbjct: 44  HVFVQTALVDFYGNAGKIVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMP 103

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
            ++  +WN MI GY+++R ++ A  +F +M   R+ +SW  +I+ + QN+   +AL +F 
Sbjct: 104 VRNTASWNAMIDGYSRLRNVESAELLFSQM-PNRDIISWTTMIACYSQNKQFREALAVFN 162

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG 504
            M   G   D  T+A  +SACAHL AL LG++IH  A++ G+  D+++G++LI MYAKCG
Sbjct: 163 EMQTNGIDPDEVTMATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCG 222

Query: 505 RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLS 564
            +  + ++F      ++  WNS+I G A++G A EA+ +F  M  E + P+ VTFI VL 
Sbjct: 223 SLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLG 282

Query: 565 ACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNA 624
           AC+H GLV+ G K F  M+  ++I P +EHY CM+DLL +AG L++A E+V+ M+++PN+
Sbjct: 283 ACTHAGLVEEGRKRFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNS 342

Query: 625 GIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSM 684
            IWG LLG C++H+N+K+ ++AV +   LEP  +  Y LL NM+AE  RW EV  +R +M
Sbjct: 343 VIWGALLGGCKLHRNLKIAQVAVNESKVLEPNNSGYYTLLVNMYAEVNRWSEVANIRATM 402

Query: 685 EGSGAQK-QPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +  G +K  PG SWIE+  +IH F + D     + EI   L  L  Q++
Sbjct: 403 KELGVEKTSPGSSWIEMDRKIHQFAASDKSHLASDEIYTLLVELDGQLK 451



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 170/319 (53%), Gaps = 15/319 (4%)

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIE 289
           + +V     ++  Y   G+++EARR+FD+M  R+V AW  MI+ + + G +  A +LF E
Sbjct: 42  DSHVFVQTALVDFYGNAGKIVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDE 101

Query: 290 MPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF 349
           MP RN  SW  MIDGY R+  ++ A  L  QMP ++I + T MI+ Y QNK+  EA  +F
Sbjct: 102 MPVRNTASWNAMIDGYSRLRNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVF 161

Query: 350 DKIGTH----DVVCWNVMIKGYAQCGRMD--EAINLFRQMVNKDIVTW--NTMIAGYAQI 401
           +++ T+    D V    +I   A  G +D  + I+L+   +  D+  +  + +I  YA+ 
Sbjct: 162 NEMQTNGIDPDEVTMATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKC 221

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
             +D ++ +F ++ +++N   WN++I G   + +  +AL +F  M +E  K +  T    
Sbjct: 222 GSLDKSLVVFFKL-RKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISV 280

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYV--NDLFVGNSLITMYAKCGRIQNAELLFKD--AD 517
           L AC H   ++ GR+   L++   +    ++     ++ +  K G +++A  L +    +
Sbjct: 281 LGACTHAGLVEEGRK-RFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRME 339

Query: 518 PVDVISWNSLIAGYAINGN 536
           P  VI W +L+ G  ++ N
Sbjct: 340 PNSVI-WGALLGGCKLHRN 357



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 179/385 (46%), Gaps = 39/385 (10%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S+VF Q   +   G +G++ EA ++F +MS+++   + +MIS +A+ G ++ AR+LF++M
Sbjct: 43  SHVFVQTALVDFYGNAGKIVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEM 102

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF- 131
           P RN  SWN+MI GY     V+ A  LF +M   D+ SW  MI CY++  +  +A  +F 
Sbjct: 103 PVRNTASWNAMIDGYSRLRNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFN 162

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
           ++  N  D                        D +    I+S  + L       E+HL +
Sbjct: 163 EMQTNGIDP-----------------------DEVTMATIISACAHLGALDLGKEIHLYA 199

Query: 192 KFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLE 251
              E   + DV   + ++D Y +   LD +   F K+ ++N+  W +++ G A +G   E
Sbjct: 200 --MEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEE 257

Query: 252 ARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMI 302
           A  +F +M       N V + +++ A    G +EE  + F+ M     +      +  M+
Sbjct: 258 ALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSIPPEIEHYGCMV 317

Query: 303 DGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDK---IGTHDVV 358
           D   +   L++A  L+  M  + N     A++ G   ++ +  A    ++   +  ++  
Sbjct: 318 DLLGKAGLLEDALELVRSMRMEPNSVIWGALLGGCKLHRNLKIAQVAVNESKVLEPNNSG 377

Query: 359 CWNVMIKGYAQCGRMDEAINLFRQM 383
            + +++  YA+  R  E  N+   M
Sbjct: 378 YYTLLVNMYAEVNRWSEVANIRATM 402



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/238 (24%), Positives = 105/238 (44%), Gaps = 19/238 (7%)

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
           M Q        T +  + AC+ ++ L  G  +H    K G+ + +FV  +L+  Y   G+
Sbjct: 1   MVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGK 60

Query: 506 IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565
           I  A  +F +    DV +W ++I+ +A  G+ + A +LF+EM +   A    ++  ++  
Sbjct: 61  IVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTA----SWNAMIDG 116

Query: 566 CSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMK---IKP 622
            S +  V+    LF  M     I      +  MI   S+  +  EA  +   M+   I P
Sbjct: 117 YSRLRNVESAELLFSQMPNRDIIS-----WTTMIACYSQNKQFREALAVFNEMQTNGIDP 171

Query: 623 NAGIWGTLLGACRMHQNIKLGR----IAVEKLSELEPQKTSCYALLSNMHAEAGRWDE 676
           +     T++ AC     + LG+     A+E   +L+    S    L +M+A+ G  D+
Sbjct: 172 DEVTMATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSA---LIDMYAKCGSLDK 226


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 215/646 (33%), Positives = 342/646 (52%), Gaps = 63/646 (9%)

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EER- 200
           +V  YA +G+ + ++   D +P K++ +WNSM+S Y  NG  H A   F  +    E R 
Sbjct: 157 LVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRP 216

Query: 201 DVVSWNLMLDGYVELDDLDS--AWKFFQKIPEQ-NVVSWVTMLSGYARNGRMLEARRLFD 257
           D  ++  +L     L D      W F  K+  Q NV    +++  Y+R G    AR LFD
Sbjct: 217 DFYTFPPVLKACGTLVDGRKIHCWAF--KLGFQWNVFVAASLIHMYSRFGFTGIARSLFD 274

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM-------------------PERNPVSW 298
            MP R++ +WNAMI+  +Q G   +A  +  EM                   P+   +S 
Sbjct: 275 DMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDIST 334

Query: 299 TTMIDGYV--------------------RIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
             +I  YV                    +   L++AR+   QM   ++ +  ++I+ Y Q
Sbjct: 335 AMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQ 394

Query: 339 NKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQC-----GRMDEAINLFRQMVNKDIV 389
           N     A+  F K+  +    D++    +    AQ       R      + R  + +D+V
Sbjct: 395 NDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVV 454

Query: 390 TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
             N ++  YA++  +D A K+FE +   ++ +SWN LI+G+ QN    +A++++ +M +E
Sbjct: 455 IGNAVVDMYAKLGLLDSAHKVFEII-PVKDVISWNTLITGYAQNGLASEAIEVYKMM-EE 512

Query: 450 GKK--ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
            K+   +  T    L A AH+ ALQ G +IH   IK+    D+FV   LI +Y KCGR+ 
Sbjct: 513 CKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLV 572

Query: 508 NAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
           +A  LF        ++WN++I+ + I+G+A + +KLF EM+ EGV PD VTF+ +LSACS
Sbjct: 573 DAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACS 632

Query: 568 HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIW 627
           H G V+ G   F  M E Y I+P ++HY CM+DLL RAG L+ A++ +K M ++P+A IW
Sbjct: 633 HSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIW 691

Query: 628 GTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGS 687
           G LLGACR+H NI+LG+ A ++L E++ +    Y LLSN++A  G+W+ V+KVR      
Sbjct: 692 GALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARER 751

Query: 688 GAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           G +K PG S IEV  ++  F +G+    +  EI   L+ L A++++
Sbjct: 752 GLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKS 797



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 139/498 (27%), Positives = 244/498 (48%), Gaps = 58/498 (11%)

Query: 231 QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
           Q++     +++ YA  G +  +R  FDQ+P ++V AWN+MI+AYV  G   EA   F ++
Sbjct: 149 QSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQL 208

Query: 291 ---PERNPVSWT---------TMIDG-------------------------YVRIAKLDE 313
               E  P  +T         T++DG                         Y R      
Sbjct: 209 LLVSEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGI 268

Query: 314 ARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV----VCWNVMIKGYAQ 369
           AR L D MP++++ +  AMISG +QN    +A  + D++    +    V    ++    Q
Sbjct: 269 ARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQ 328

Query: 370 CGRMDEA--INLF--RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
            G +  A  I+L+  +  +  D+   N +I  YA+   ++DA K F++M    + VSWN+
Sbjct: 329 LGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQM-FITDVVSWNS 387

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485
           +I+ + QN+  + A   FV M   G + D  TL    S  A     +  R +H   ++ G
Sbjct: 388 IIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRG 447

Query: 486 YV-NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLF 544
           ++  D+ +GN+++ MYAK G + +A  +F+     DVISWN+LI GYA NG A+EAI+++
Sbjct: 448 WLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVY 507

Query: 545 EEM-VMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF-ECMTEVYAIEPLVEHYACMIDLL 602
           + M   + + P+  T++ +L A +HVG +  G+K+    +     ++  V    C+ID+ 
Sbjct: 508 KMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVA--TCLIDVY 565

Query: 603 SRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNI-KLGRIAVEKLSE-LEPQKTSC 660
            + GRL +A  +   +  + ++  W  ++    +H +  K  ++  E L E ++P   + 
Sbjct: 566 GKCGRLVDAMSLFYQVP-QESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTF 624

Query: 661 YALLS----NMHAEAGRW 674
            +LLS    +   E G+W
Sbjct: 625 VSLLSACSHSGFVEEGKW 642



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 143/564 (25%), Positives = 255/564 (45%), Gaps = 96/564 (17%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF-----RP 106
           +++ YA  G V+ +R  F+Q+PQ+++ +WNSMI+ Y+HN    EA   F ++      RP
Sbjct: 157 LVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRP 216

Query: 107 DLFSWALMI-TCYTRKGELEKAREL----FDLLPNKEDTACWNAMVAG-----YAKIGNY 156
           D +++  ++  C    G L   R++    F L         WN  VA      Y++ G  
Sbjct: 217 DFYTFPPVLKAC----GTLVDGRKIHCWAFKL------GFQWNVFVAASLIHMYSRFGFT 266

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGY 212
             A+ L D MP +++ SWN+M+SG  +NG    A    + M     + + V+   +L   
Sbjct: 267 GIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVC 326

Query: 213 VELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN 268
            +L D+ +A      +     E ++     +++ YA+ G + +AR+ F QM I +VV+WN
Sbjct: 327 PQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWN 386

Query: 269 AMIAAYVQRGQIEEAARLFIEM------PE------------------------------ 292
           ++IAAY Q      A   F++M      P+                              
Sbjct: 387 SIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRR 446

Query: 293 ----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQN--------- 339
                + V    ++D Y ++  LD A ++ + +P K++ +   +I+GY QN         
Sbjct: 447 GWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEV 506

Query: 340 -KRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVTWNTM 394
            K M+E  +I    GT     W  ++  YA  G + + + +  +++      D+     +
Sbjct: 507 YKMMEECKEIIPNQGT-----WVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCL 561

Query: 395 IAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
           I  Y +  ++ DA+ +F ++  + ++V+WNA+IS    +      LK+F  M  EG K D
Sbjct: 562 IDVYGKCGRLVDAMSLFYQV-PQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPD 620

Query: 455 HSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
           H T    LSAC+H   ++ G+    L  + G    L     ++ +  + G ++ A    K
Sbjct: 621 HVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIK 680

Query: 515 DADPV--DVISWNSLIAGYAINGN 536
           D  P+  D   W +L+    I+GN
Sbjct: 681 DM-PLQPDASIWGALLGACRIHGN 703



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 141/258 (54%), Gaps = 17/258 (6%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           N++I+ YAK G + DARK F+QM   ++VSWNS+IA Y  ND    A   F KM    F+
Sbjct: 355 NALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQ 414

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNK----EDTACWNAMVAGYAKIGNYNEAKK 161
           PDL +   + +   +  + + +R +   +  +    ED    NA+V  YAK+G  + A K
Sbjct: 415 PDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHK 474

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE-RDVV----SWNLMLDGYVELD 216
           + + +P K+++SWN++++GY +NG    A + ++ MEE ++++    +W  +L  Y  + 
Sbjct: 475 VFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVG 534

Query: 217 DLDSAWKFFQKIPEQN----VVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
            L    K   ++ + N    V     ++  Y + GR+++A  LF Q+P  + V WNA+I+
Sbjct: 535 ALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIIS 594

Query: 273 AYVQRGQIEEAARLFIEM 290
            +   G  E+  +LF EM
Sbjct: 595 CHGIHGHAEKTLKLFGEM 612



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 117/461 (25%), Positives = 201/461 (43%), Gaps = 88/461 (19%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           Q N     S+I  Y++ G    AR LF+ MP R++ SWN+MI+G + N    +A ++ D+
Sbjct: 247 QWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDE 306

Query: 103 M-----------------FRPDL--FSWALMITCYTRKGELEKARELFDLLPNKEDTACW 143
           M                   P L   S A++I  Y  K  LE     FDL  +       
Sbjct: 307 MRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLE-----FDLFVS------- 354

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----- 198
           NA++  YAK GN  +A+K    M   ++VSWNS+++ Y +N +   A  FF  M+     
Sbjct: 355 NALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQ 414

Query: 199 -----------------------------------ERDVVSWNLMLDGYVELDDLDSAWK 223
                                                DVV  N ++D Y +L  LDSA K
Sbjct: 415 PDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHK 474

Query: 224 FFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP-----IRNVVAWNAMIAAYVQRG 278
            F+ IP ++V+SW T+++GYA+NG   EA  ++  M      I N   W +++ AY   G
Sbjct: 475 VFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVG 534

Query: 279 QIEEAARLFIEMPERN----PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMIS 334
            +++  ++   + + N        T +ID Y +  +L +A  L  Q+P ++     A+IS
Sbjct: 535 ALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIIS 594

Query: 335 GYVQNKRMDEANQIF----DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNK 386
            +  +   ++  ++F    D+    D V +  ++   +  G ++E    FR M    +  
Sbjct: 595 CHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKP 654

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
            +  +  M+    +   ++ A    ++M  + +   W AL+
Sbjct: 655 SLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALL 695



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 154/343 (44%), Gaps = 39/343 (11%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
           ++ V  N+++  YAK G ++ A K+FE +P ++++SWN++I GY  N    EA E++  M
Sbjct: 451 EDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMM 510

Query: 104 -----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGN 155
                  P+  +W  ++  Y   G L++  ++   +       D      ++  Y K G 
Sbjct: 511 EECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGR 570

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLML-- 209
             +A  L   +P ++ V+WN+++S +  +G      K F  M +     D V++  +L  
Sbjct: 571 LVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSA 630

Query: 210 ---DGYVELDDLDSAWKF--FQKIP-EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR- 262
               G+VE    +  W F   Q+   + ++  +  M+    R G +  A      MP++ 
Sbjct: 631 CSHSGFVE----EGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQP 686

Query: 263 NVVAWNAMIAAYVQRGQIE----EAARLFIEMPERNPVSWTTMIDGYVRIAK---LDEAR 315
           +   W A++ A    G IE     + RLF E+  +N   +  + + Y  + K   +D+ R
Sbjct: 687 DASIWGALLGACRIHGNIELGKFASDRLF-EVDSKNVGYYVLLSNIYANVGKWEGVDKVR 745

Query: 316 RL-----LDQMP-YKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
            L     L + P +  I     +   Y  N+   +  +I++++
Sbjct: 746 SLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEEL 788



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 143/308 (46%), Gaps = 27/308 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ---- 74
           N  +    K G ++ A K+F  +  K+ +++N++I+ YA+NG  ++A ++++ M +    
Sbjct: 457 NAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEI 516

Query: 75  -RNLVSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKARE 129
             N  +W S++  Y H   +++  ++  ++ +     D+F    +I  Y + G L  A  
Sbjct: 517 IPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMS 576

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNG 185
           LF  +P +E +  WNA+++ +   G+  +  KL   M  + +    V++ S+LS  + +G
Sbjct: 577 LFYQVP-QESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSG 635

Query: 186 EMHLASKFFEAMEERDVVS----WNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-WVTML 240
            +      F  M+E  +      +  M+D       L+ A+ F + +P Q   S W  +L
Sbjct: 636 FVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALL 695

Query: 241 SGYARNGRM----LEARRLFDQMPIRNVVAWNAMIAAYVQRGQ---IEEAARLFIEMPER 293
                +G +      + RLF ++  +NV  +  +   Y   G+   +++   L  E   +
Sbjct: 696 GACRIHGNIELGKFASDRLF-EVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLK 754

Query: 294 NPVSWTTM 301
               W+T+
Sbjct: 755 KTPGWSTI 762



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 90/197 (45%), Gaps = 11/197 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF     I   GK GR+ +A+ +F Q+ Q+++VT+N++IS +  +G      KLF +M  
Sbjct: 555 VFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLD 614

Query: 75  RNL----VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEK 126
             +    V++ S+++   H+  V+E +  F  M     +P L  +  M+    R G LE 
Sbjct: 615 EGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEM 674

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM---PSKNIVSWNSMLSGYTK 183
           A +    +P + D + W A++      GN    K   D +    SKN+  +  + + Y  
Sbjct: 675 AYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYAN 734

Query: 184 NGEMHLASKFFEAMEER 200
            G+     K      ER
Sbjct: 735 VGKWEGVDKVRSLARER 751



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 6/162 (3%)

Query: 473 LGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYA 532
             + +H L + +G V  +F+   L+ +YA  G +  +   F      DV +WNS+I+ Y 
Sbjct: 134 FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYV 193

Query: 533 INGNATEAIKLFEEMVM-EGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL 591
            NG+  EAI  F ++++   + PD  TF  VL AC    LVDG  +   C       +  
Sbjct: 194 HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACG--TLVDG--RKIHCWAFKLGFQWN 249

Query: 592 VEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
           V   A +I + SR G    A  +   M  + + G W  ++  
Sbjct: 250 VFVAASLIHMYSRFGFTGIARSLFDDMPFR-DMGSWNAMISG 290


>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
 gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 938

 Score =  343 bits (881), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 233/757 (30%), Positives = 380/757 (50%), Gaps = 95/757 (12%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF 109
            S +  YA  G V++A+K+F +MP RN+VSW S++  Y  N   KE    + +M    + 
Sbjct: 98  TSFVHFYASYGIVSNAQKMFNEMPDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGIC 157

Query: 110 ----SWALMITCYTRKGELEKARELFDL-----LPNKEDTACWNAMVAGYAKIGNYNEAK 160
               + AL+I+      ++    +L        L  K   A  N+++  +   G+ NEA 
Sbjct: 158 CNENNIALVISSCGFLMDIILGHQLLGHALKFGLETKVSAA--NSLIFMFGGCGDINEAC 215

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSWNLMLDGYVELD 216
            + + M  ++ +SWNS++S   +N     + ++F  M    EE +  + +++L     +D
Sbjct: 216 SIFNEMNERDTISWNSIISANAQNTLHEESFRYFHWMRLVHEEINYTTLSILLSICGSVD 275

Query: 217 DLDSAW-KFFQKIP-----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAM 270
            L   W K    +      E N+    T+LS Y+  GR  +A  +F +MP R++++WN+M
Sbjct: 276 YLK--WGKGVHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAELIFRRMPERDLISWNSM 333

Query: 271 IAAYVQRGQIEEAARLFIEM----PERNPVSWTT---------------MIDGYVRIAKL 311
           +A YVQ G+   A ++F EM     E N V++T+               ++ G+V +  L
Sbjct: 334 LACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAACLDPEFFTNGKILHGFVVVLGL 393

Query: 312 DEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
                  D++   N      +I+ Y +  +M EA ++F ++   D V WN +I G+A   
Sbjct: 394 Q------DELIIGN-----TLITFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGGFANNA 442

Query: 372 RMDEAINLFRQM---------------------VNKDIVTW------------------- 391
            ++EA+  F+ M                      ++D++ +                   
Sbjct: 443 ELNEAVAAFKLMREGSTSGVDYITIVNILGSCLTHEDLIKYGIPIHAHTVVTGFDLDQHV 502

Query: 392 -NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
            +++I  YA+   +  +  IF+++  + ++V WNA+I+   +  F  +ALK+ V M   G
Sbjct: 503 QSSLITMYAKCGDLHSSSYIFDQLVFKTSSV-WNAIIAANARYGFGEEALKLVVRMRSAG 561

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
            + D    + ALS  A LA L+ G+Q+H   IK G+  D F+ N+ + MY KCG + +A 
Sbjct: 562 IEFDQFNFSTALSVAADLAMLEEGQQLHGSTIKLGFELDHFIINAAMDMYGKCGELDDAL 621

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
            +         +SWN+LI+  A +G   +A + F +M+  GV P+ V+F+ +LSACSH G
Sbjct: 622 RILPQPTDRSRLSWNTLISISARHGQFHKAKETFHDMLKLGVKPNHVSFVCLLSACSHGG 681

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
           LVD GL  +  MT VY I+P +EH  CMIDLL R+GRL EA   +  M I PN  +W +L
Sbjct: 682 LVDEGLAYYASMTSVYGIQPGIEHCVCMIDLLGRSGRLVEAEAFITEMPIPPNDLVWRSL 741

Query: 631 LGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQ 690
           L +CR+++N+ LGR A + L EL+P   S Y L SN+ A  GRW++VE VR  M     Q
Sbjct: 742 LASCRIYRNLDLGRKAAKHLLELDPSDDSAYVLYSNVFATIGRWEDVEDVRGQMGAHKIQ 801

Query: 691 KQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
           K+P  SW++ K  I  F  GD    +  +I   L  L
Sbjct: 802 KKPAHSWVKWKGNISIFGMGDQTHPQMEQINGKLLGL 838



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 186/712 (26%), Positives = 307/712 (43%), Gaps = 84/712 (11%)

Query: 56  YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSW 111
           Y+K GR+N A+ +F++M +RN  SWN M++GY+      EA   F  +     +P  F  
Sbjct: 2   YSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFMI 61

Query: 112 ALMITCYTRKGELEKARELFDLLPNK----EDTACWNAMVAGYAKIGNYNEAKKLLDAMP 167
           A ++T   +   + K    F     K     D     + V  YA  G  + A+K+ + MP
Sbjct: 62  ASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEMP 121

Query: 168 SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV-----------SWNLMLDGYVELD 216
            +N+VSW S++  Y+ NG        ++ M    +            S   ++D  +   
Sbjct: 122 DRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGHQ 181

Query: 217 DLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ 276
            L  A KF  +       S + M  G    G + EA  +F++M  R+ ++WN++I+A  Q
Sbjct: 182 LLGHALKFGLETKVSAANSLIFMFGG---CGDINEACSIFNEMNERDTISWNSIISANAQ 238

Query: 277 RGQIEEAARLFIEMP-ERNPVSWTTM-----IDGYVRIAKLDEARRLLDQMPY---KNIA 327
               EE+ R F  M      +++TT+     I G V   K  +    L  + Y    NI 
Sbjct: 239 NTLHEESFRYFHWMRLVHEEINYTTLSILLSICGSVDYLKWGKGVHGL-AVKYGLESNIC 297

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM---- 383
               ++S Y    R  +A  IF ++   D++ WN M+  Y Q GR   A+ +F +M    
Sbjct: 298 LCNTLLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMK 357

Query: 384 -----------------------------------VNKDIVTWNTMIAGYAQIRQMDDAV 408
                                              +  +++  NT+I  Y +  +M +A 
Sbjct: 358 KEINYVTFTSALAACLDPEFFTNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAK 417

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA--DHSTLACALSAC- 465
           K+F+ M K  + V+WNALI GF  N    +A+  F LM +EG  +  D+ T+   L +C 
Sbjct: 418 KVFQRMPK-LDKVTWNALIGGFANNAELNEAVAAFKLM-REGSTSGVDYITIVNILGSCL 475

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
            H   ++ G  IH   + +G+  D  V +SLITMYAKCG + ++  +F          WN
Sbjct: 476 THEDLIKYGIPIHAHTVVTGFDLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWN 535

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
           ++IA  A  G   EA+KL   M   G+  D   F   LS  + + +++ G +L     ++
Sbjct: 536 AIIAANARYGFGEEALKLVVRMRSAGIEFDQFNFSTALSVAADLAMLEEGQQLHGSTIKL 595

Query: 586 -YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
            + ++  + + A  +D+  + G LD+A  ++     +     W TL+     H      +
Sbjct: 596 GFELDHFIINAA--MDMYGKCGELDDALRILPQPTDRSRLS-WNTLISISARHGQFHKAK 652

Query: 645 IAVEKLSEL--EPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPG 694
                + +L  +P   S   LLS   +  G  DE      SM  S    QPG
Sbjct: 653 ETFHDMLKLGVKPNHVSFVCLLSAC-SHGGLVDEGLAYYASMT-SVYGIQPG 702



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 135/615 (21%), Positives = 248/615 (40%), Gaps = 160/615 (26%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP----- 73
           N  I   G  G + EA  IF++M++++T+++NS+ISA A+N    ++ + F  M      
Sbjct: 199 NSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNTLHEESFRYFHWMRLVHEE 258

Query: 74  ----------------------------------QRNLVSWNSMIAGYLHNDKVKEAREL 99
                                             + N+   N++++ Y    + K+A  +
Sbjct: 259 INYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAELI 318

Query: 100 FDKMFRPDLFSWALMITCYTRKGELEKARELF-DLLPNKED----------TACW----- 143
           F +M   DL SW  M+ CY + G    A ++F ++L  K++           AC      
Sbjct: 319 FRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAACLDPEFF 378

Query: 144 ----------------------NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
                                 N ++  Y K     EAKK+   MP  + V+WN+++ G+
Sbjct: 379 TNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGGF 438

Query: 182 TKNGEMHLASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSW 236
             N E++ A   F+ M E      D ++   +L   +  +DL    K+   I    VV+ 
Sbjct: 439 ANNAELNEAVAAFKLMREGSTSGVDYITIVNILGSCLTHEDL---IKYGIPIHAHTVVTG 495

Query: 237 V--------TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFI 288
                    ++++ YA+ G +  +  +FDQ+  +    WNA+IAA  + G  EEA +L +
Sbjct: 496 FDLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAANARYGFGEEALKLVV 555

Query: 289 EMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDE 344
            M     E +  +++T +     +A L+E ++L     + +       +  ++ N  MD 
Sbjct: 556 RMRSAGIEFDQFNFSTALSVAADLAMLEEGQQL-----HGSTIKLGFELDHFIINAAMDM 610

Query: 345 ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQM 404
                                 Y +CG +D+A+ +  Q  ++  ++WNT+I+  A+  Q 
Sbjct: 611 ----------------------YGKCGELDDALRILPQPTDRSRLSWNTLISISARHGQF 648

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSA 464
             A + F +M                         LK+       G K +H +  C LSA
Sbjct: 649 HKAKETFHDM-------------------------LKL-------GVKPNHVSFVCLLSA 676

Query: 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVGN--SLITMYAKCGRIQNAELLFKDAD-PVDV 521
           C+H   +  G   ++ ++ S Y     + +   +I +  + GR+  AE    +   P + 
Sbjct: 677 CSHGGLVDEGLA-YYASMTSVYGIQPGIEHCVCMIDLLGRSGRLVEAEAFITEMPIPPND 735

Query: 522 ISWNSLIAGYAINGN 536
           + W SL+A   I  N
Sbjct: 736 LVWRSLLASCRIYRN 750



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 38/69 (55%)

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           MY+K GRI  A+L+F      +  SWN +++GY   G+  EA+  F ++   G+ P    
Sbjct: 1   MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFM 60

Query: 559 FIGVLSACS 567
              +++AC+
Sbjct: 61  IASLVTACN 69


>gi|357490817|ref|XP_003615696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517031|gb|AES98654.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  343 bits (881), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 226/722 (31%), Positives = 358/722 (49%), Gaps = 75/722 (10%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           N      ++S YAK G +  ARK+F +M  RNL +W++MI G   N    E   LF  M 
Sbjct: 116 NPFVETKLVSMYAKCGLLGMARKVFNEMSVRNLFTWSAMIGGCSRNKSWGEVVGLFYAMM 175

Query: 105 R----PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
           R    PD F    ++    +  +LE  R                                
Sbjct: 176 RDGVLPDEFLLPKVLQACGKCRDLETGR-------------------------------- 203

Query: 161 KLLDAMPSKNIVSW-----NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
            L+ +M  +  + W     NS+++ Y K GEM  A K F+ M+ERD V+WN M+ G+ + 
Sbjct: 204 -LIHSMVIRRGMRWSKHLRNSIMAVYAKCGEMDCAKKIFDCMDERDSVAWNAMISGFCQN 262

Query: 216 DDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMP----IRNVVAW 267
            ++  A K+F  +     E ++V+W  ++S Y + G    A  L  +M       +V  W
Sbjct: 263 GEIGQAQKYFDAMQKDGVEPSLVTWNILISCYNQLGHCDLAIDLMRKMEWFGIAPDVYTW 322

Query: 268 NAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLD---EARRLLDQ 320
            +MI+ + Q+G+I  A  L  EM     E N ++  +       +  L    E   +  +
Sbjct: 323 TSMISGFTQKGRISHALDLLKEMFLAGVEANNITIASAASACAALKSLSMGLEIHSIAVK 382

Query: 321 MPY-KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
           M    N+    ++I  Y +   +  A  IFD +   DV  WN +I GY Q G   +A  L
Sbjct: 383 MNLVDNVLVGNSLIDMYCKCGDLKAAQHIFDMMSERDVYSWNSIIGGYFQAGFCGKAHEL 442

Query: 380 FRQMVNKD----IVTWNTMIAGYAQIRQMDDAVKIFEEMGK----RRNTVSWNALISGFL 431
           F +M   D    I+TWN MI GY Q    D A+ +F+ + K    +RN  SWN+LISGF+
Sbjct: 443 FMKMQESDSPPNIITWNIMITGYMQSGAEDQALDLFKSIEKDGKTKRNAASWNSLISGFV 502

Query: 432 QNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLF 491
           Q+     AL+IF  M       +  T+   L  CA+L A +  ++IH  A++   V++L 
Sbjct: 503 QSGQKDKALQIFRNMQFCHILPNSVTILSILPVCANLVASKKVKEIHCFAVRRILVSELS 562

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
           V N LI  YAK G +  ++ +F +    D +SWNS+++ Y ++G +  A+ LF +M  +G
Sbjct: 563 VSNLLIDSYAKSGNLMYSKNIFNELSWKDAVSWNSMLSSYVLHGCSESALDLFYQMRKQG 622

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
           + P+  TF  +L A  H G+VD G  +F C+T+ Y +   +EHY+ M+ LL R+G+L EA
Sbjct: 623 LQPNRGTFASILLAYGHAGMVDEGKSVFSCITKDYLVRQGMEHYSAMVYLLGRSGKLAEA 682

Query: 612 FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEA 671
            + ++ M I+PN+ +WG LL ACR+H+N  +  +A +++ E EP       LLS  ++  
Sbjct: 683 LDFIQSMPIEPNSSVWGALLTACRIHRNFGVAVLAGKRMLEFEPGNNITRHLLSQAYSLC 742

Query: 672 GRWDEVEKVRVSMEGSGAQKQP-GCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQ 730
           G+++         EG  A  +P G SWIE  N +HTF+ GD       ++ + LK +A  
Sbjct: 743 GKFEP--------EGEKAVNKPIGQSWIERNNVVHTFVVGDQSNPYLDKLHSWLKRVAVN 794

Query: 731 IR 732
           ++
Sbjct: 795 VK 796



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 141/601 (23%), Positives = 270/601 (44%), Gaps = 78/601 (12%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F + K ++   K G +  A K+F++MS +N  T+++MI   ++N    +   LF  M + 
Sbjct: 118 FVETKLVSMYAKCGLLGMARKVFNEMSVRNLFTWSAMIGGCSRNKSWGEVVGLFYAMMRD 177

Query: 76  NLVSWNSMIAGYLH---NDKVKEARELFDKMFRPDLFSWA-----LMITCYTRKGELEKA 127
            ++    ++   L      +  E   L   M       W+      ++  Y + GE++ A
Sbjct: 178 GVLPDEFLLPKVLQACGKCRDLETGRLIHSMVIRRGMRWSKHLRNSIMAVYAKCGEMDCA 237

Query: 128 RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTK 183
           +++FD + ++ D+  WNAM++G+ + G   +A+K  DAM    +    V+WN ++S Y +
Sbjct: 238 KKIFDCM-DERDSVAWNAMISGFCQNGEIGQAQKYFDAMQKDGVEPSLVTWNILISCYNQ 296

Query: 184 NGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKI----------- 228
            G   LA      ME      DV +W  M+ G+ +   +  A    +++           
Sbjct: 297 LGHCDLAIDLMRKMEWFGIAPDVYTWTSMISGFTQKGRISHALDLLKEMFLAGVEANNIT 356

Query: 229 ----------------------------PEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
                                          NV+   +++  Y + G +  A+ +FD M 
Sbjct: 357 IASAASACAALKSLSMGLEIHSIAVKMNLVDNVLVGNSLIDMYCKCGDLKAAQHIFDMMS 416

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARR 316
            R+V +WN++I  Y Q G   +A  LF++M E     N ++W  MI GY++    D+A  
Sbjct: 417 ERDVYSWNSIIGGYFQAGFCGKAHELFMKMQESDSPPNIITWNIMITGYMQSGAEDQALD 476

Query: 317 LL-----DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG-YAQC 370
           L      D    +N A+  ++ISG+VQ+ + D+A QIF  +    ++  +V I      C
Sbjct: 477 LFKSIEKDGKTKRNAASWNSLISGFVQSGQKDKALQIFRNMQFCHILPNSVTILSILPVC 536

Query: 371 GRMDEA-----INLF--RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
             +  +     I+ F  R+++  ++   N +I  YA+   +  +  IF E+   ++ VSW
Sbjct: 537 ANLVASKKVKEIHCFAVRRILVSELSVSNLLIDSYAKSGNLMYSKNIFNELS-WKDAVSW 595

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
           N+++S ++ +     AL +F  M ++G + +  T A  L A  H   +  G+ +     K
Sbjct: 596 NSMLSSYVLHGCSESALDLFYQMRKQGLQPNRGTFASILLAYGHAGMVDEGKSVFSCITK 655

Query: 484 SGYVND-LFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS--WNSLIAGYAINGNATEA 540
              V   +   ++++ +  + G++  A L F  + P++  S  W +L+    I+ N   A
Sbjct: 656 DYLVRQGMEHYSAMVYLLGRSGKLAEA-LDFIQSMPIEPNSSVWGALLTACRIHRNFGVA 714

Query: 541 I 541
           +
Sbjct: 715 V 715


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  343 bits (881), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 223/732 (30%), Positives = 368/732 (50%), Gaps = 48/732 (6%)

Query: 23  TQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR----NLV 78
           T L    R EE+ K F  + + N   Y   ISA      +   R++  Q        N+V
Sbjct: 59  TSLNLHNREEESSK-FHFLQRLNPKFY---ISALVNCRNLTQVRQVHAQASVHGMLENIV 114

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
             N +I  Y +   + +A  LFD M   D  SW++M+  + + G+       F     +E
Sbjct: 115 VANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTF-----RE 169

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
              C        A+  NY     +      KN+    +++  Y K  E+  A   F+ M+
Sbjct: 170 LIRCG-------ARPDNYTLPFVIRACRDLKNLQM--ALVDMYVKCREIEDARFLFDKMQ 220

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV----SWVTMLSGYARNGRMLEARR 254
           ERD+V+W +M+ GY E    + +   F+K+ E+ VV    + VT++   A+ G M +AR 
Sbjct: 221 ERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARI 280

Query: 255 LFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAK 310
           + D +  +    +V+   AMI  Y + G +E A  +F  M E+N +SW+ MI  Y    +
Sbjct: 281 IDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQ 340

Query: 311 ----LDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNV 362
               LD  R +L      +     +++   +  + + +  Q+  +   H    +++  N 
Sbjct: 341 GRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANK 400

Query: 363 MIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRN 419
           ++  Y+    +D+A  LF  M  +D V+W+ M+ G+A++    +    F E+   G R +
Sbjct: 401 LVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPD 460

Query: 420 TVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHH 479
             +       F  N    ++L +F  M +EG   D   +   + ACA L A+   R I  
Sbjct: 461 NYTLP-----FCGNAN--ESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDD 513

Query: 480 LAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATE 539
              +  +  D+ +G ++I M+AKCG +++A  +F   +  +VISW+++IA Y  +G   +
Sbjct: 514 YIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRK 573

Query: 540 AIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMI 599
           A+ LF  M+  G+ P+ +T + +L ACSH GLV+ GL+ F  M E Y++   V+HY C++
Sbjct: 574 ALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVV 633

Query: 600 DLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTS 659
           DLL RAGRLDEA ++++ M ++ + G+WG  LGACR H+++ L   A   L EL+PQ   
Sbjct: 634 DLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPG 693

Query: 660 CYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAE 719
            Y LLSN++A AGRW++V K R  M     +K PG +WIEV N+ H F  GD    R+ E
Sbjct: 694 HYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKE 753

Query: 720 ICNTLKTLAAQI 731
           I   LK+L  ++
Sbjct: 754 IYEMLKSLGNKL 765



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 162/353 (45%), Gaps = 54/353 (15%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL---- 77
           I    K G VE A +IF +M +KN +++++MI+AY  +G+   A  LF  M    +    
Sbjct: 301 IDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDK 360

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDL 133
           ++  S++   ++   + + R++  +        +L     ++  Y+    L+ A  LFD 
Sbjct: 361 ITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDG 420

Query: 134 LPNKEDTACWNAMVAGYAKIGNY----------------------------NEAKKLLDA 165
           +  + D+  W+ MV G+AK+G+Y                            NE+  L D 
Sbjct: 421 MCVR-DSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDK 479

Query: 166 MPSKNI----VSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDD 217
           M  + +    V+  +++    K G MH A    + ++ +    DV+    M+D + +   
Sbjct: 480 MREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGC 539

Query: 218 LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM----PIRNVVAWNAMIAA 273
           ++SA + F ++ E+NV+SW  M++ Y  +G+  +A  LF  M     + N +   +++ A
Sbjct: 540 VESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYA 599

Query: 274 YVQRGQIEEAARLFIEMPERNPV-----SWTTMIDGYVRIAKLDEARRLLDQM 321
               G +EE  R F  M E   V      +T ++D   R  +LDEA +L++ M
Sbjct: 600 CSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESM 652



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 94/181 (51%), Gaps = 11/181 (6%)

Query: 21  KITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSW 80
           K+  + K+  +++ I+   +  Q + +   +MI  +AK G V  AR++F++M ++N++SW
Sbjct: 501 KLGAMHKARTIDDYIQ--RKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISW 558

Query: 81  NSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLL-- 134
           ++MIA Y ++ + ++A +LF  M R    P+  +   ++   +  G +E+    F L+  
Sbjct: 559 SAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWE 618

Query: 135 --PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNGEMHLAS 191
               + D   +  +V    + G  +EA KL+++M   K+   W + L     + ++ LA 
Sbjct: 619 DYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAE 678

Query: 192 K 192
           K
Sbjct: 679 K 679


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 244/868 (28%), Positives = 391/868 (45%), Gaps = 186/868 (21%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR---- 105
           N ++++YAK  R+  A ++F++MP+RN VSW  +++GY+ +   +EA  +F  M R    
Sbjct: 100 NHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLHGIAEEAFRVFRAMLREVQA 159

Query: 106 --------------------PDLFSWALMITCYTRKGELEK------------------- 126
                               PD   +A+ +     K E                      
Sbjct: 160 GCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYASNTTVCNALISMYGSCTVGP 219

Query: 127 ---ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM----------PSKN--- 170
              A+ +FD  P + D   WNA+++ YAK G+      L   M          P+++   
Sbjct: 220 PILAQRVFDGTPIR-DLITWNALMSVYAKKGDVASTFTLFKDMQRGDSRIQLRPTEHTFG 278

Query: 171 ------------------IVSW-------------NSMLSGYTKNGEMHLASKFFEAMEE 199
                             ++ W             ++++S + ++G    A   F ++++
Sbjct: 279 SLITAASLSSGSSAVLDQVLVWVLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQ 338

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFF---QKIPEQNVVSWVTMLSGYA---------RNG 247
           ++ V+ N ++ G V  D  + A K F   +   + N  ++V +LS  A         R G
Sbjct: 339 KNAVTLNGLIVGLVRQDFSEEAVKIFVGTRNTVDVNADTYVVLLSALAEYSISEEGLRIG 398

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVR 307
           R++    L   +    +   N ++  Y + G IE A+++F  M   + +SW T+I    +
Sbjct: 399 RVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIISALDQ 458

Query: 308 IAKLDEARRLLDQMPYKNIAAQT-AMISG------------------------------- 335
               +EA      M    I+    A+IS                                
Sbjct: 459 NGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSV 518

Query: 336 -------YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGR-MDEAINLFRQM---- 383
                  Y +   M +  ++F+ +  HD V WN M+   A     + E + +F  M    
Sbjct: 519 SNVLVKMYGECGAMSDYWKVFNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGG 578

Query: 384 -----------------------------------VNKDIVTWNTMIAGYAQIRQMDDAV 408
                                              V +D V  N +I+ YA+   M    
Sbjct: 579 LIPNKVTFINLLAALSPLSVLELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDMGSCE 638

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
            +F  M  RR+ +SWN++ISG++ N    +A+    LM   G+  D  T +  L+ACA +
Sbjct: 639 HLFTNMSDRRDAISWNSMISGYIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNACASV 698

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
           AAL+ G ++H   I+S   +D+ V ++L+ MY+KCGR+  A  LF      +  SWNS+I
Sbjct: 699 AALERGMELHAFGIRSHLESDVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMI 758

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI 588
           +GYA +G   +AI++FEEM+    +PD VTF+ VLSACSH GLV+ GL+ FE M + + I
Sbjct: 759 SGYARHGLGRKAIEIFEEMLRSRESPDHVTFVSVLSACSHAGLVERGLEYFEMMPD-HGI 817

Query: 589 EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQ---NIKLGRI 645
            P +EHY+C+IDLL RAG++D+  E ++ M I+PNA IW T+L ACR  +   NI LGR 
Sbjct: 818 LPQIEHYSCVIDLLGRAGKIDKIKEYIQRMPIEPNALIWRTVLVACRQSKDGSNIDLGRE 877

Query: 646 AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705
           A   L E+EPQ    Y L SN HA  G W++  K R +M  +  +K+ G SW+ + + +H
Sbjct: 878 ASRVLLEIEPQNPVNYVLASNFHAATGMWEDTAKARTAMRQATEKKEAGRSWVTLNDGVH 937

Query: 706 TFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           TF++GD     T EI   L  L   IRN
Sbjct: 938 TFIAGDRSHPNTKEIYEKLNFLIQNIRN 965



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 172/722 (23%), Positives = 307/722 (42%), Gaps = 131/722 (18%)

Query: 58  KNGRVNDARKLFEQMPQR----NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWAL 113
           + G  N    L  ++ +R    +L   N ++  Y    ++  A ++FD+M   +  SW  
Sbjct: 73  RGGDANSPENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTC 132

Query: 114 MITCYTRKGELEKARELF--------------------------DLLPNK---------- 137
           +++ Y   G  E+A  +F                          D  P++          
Sbjct: 133 LVSGYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGL 192

Query: 138 -------EDTACWNAMVAGYAK--IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
                   +T   NA+++ Y    +G    A+++ D  P +++++WN+++S Y K G++ 
Sbjct: 193 VSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVA 252

Query: 189 LASKFFEAMEERDV-VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV---------- 237
                F+ M+  D  +        +  L    S       + +Q V+ WV          
Sbjct: 253 STFTLFKDMQRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQ-VLVWVLKSGCSSDLY 311

Query: 238 ---TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
               ++S +AR+G   EA+ +F  +  +N V  N +I   V++   EEA ++F+    RN
Sbjct: 312 VGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFV--GTRN 369

Query: 295 PVSWTTMIDGYV----------------RIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
            V      D YV                RI ++     L   +    IA    +++ Y +
Sbjct: 370 TVDVNA--DTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAK 427

Query: 339 NKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAI---NLFR-------------- 381
              ++ A++IF  +   D + WN +I    Q G  +EA+   +L R              
Sbjct: 428 CGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCISPSNFALISS 487

Query: 382 -------------QMVNKDIVTW---------NTMIAGYAQIRQMDDAVKIFEEMGKRRN 419
                        Q V+ D V W         N ++  Y +   M D  K+F  M +  +
Sbjct: 488 LSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMAE-HD 546

Query: 420 TVSWNALISGFLQNEFHL-DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIH 478
            VSWN ++     ++  + + +K+F  M + G   +  T    L+A + L+ L+LG+Q+H
Sbjct: 547 EVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAALSPLSVLELGKQVH 606

Query: 479 HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD-ADPVDVISWNSLIAGYAINGNA 537
              +K G + D  V N+LI+ YAK G + + E LF + +D  D ISWNS+I+GY  NGN 
Sbjct: 607 AAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYNGNL 666

Query: 538 TEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYAC 597
            EA+     M+  G   D  TF  +L+AC+ V  ++ G++L       + +E  V   + 
Sbjct: 667 QEAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGMELHAFGIRSH-LESDVVVESA 725

Query: 598 MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK 657
           ++D+ S+ GR+D A ++   M  + N   W +++     H    LGR A+E   E+   +
Sbjct: 726 LVDMYSKCGRVDYASKLFNSMT-QRNEFSWNSMISGYARH---GLGRKAIEIFEEMLRSR 781

Query: 658 TS 659
            S
Sbjct: 782 ES 783



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 91/174 (52%), Gaps = 10/174 (5%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S + N    +  L + G    A  I S + + + V  ++++  Y+K GRV+ A KLF  M
Sbjct: 689 SIILNACASVAALER-GMELHAFGIRSHL-ESDVVVESALVDMYSKCGRVDYASKLFNSM 746

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAR 128
            QRN  SWNSMI+GY  +   ++A E+F++M R    PD  ++  +++  +  G +E+  
Sbjct: 747 TQRNEFSWNSMISGYARHGLGRKAIEIFEEMLRSRESPDHVTFVSVLSACSHAGLVERGL 806

Query: 129 ELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMP-SKNIVSWNSML 178
           E F+++P+         ++ ++    + G  ++ K+ +  MP   N + W ++L
Sbjct: 807 EYFEMMPDHGILPQIEHYSCVIDLLGRAGKIDKIKEYIQRMPIEPNALIWRTVL 860



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 89/176 (50%), Gaps = 14/176 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V  ++  +    K GRV+ A K+F+ M+Q+N  ++NSMIS YA++G    A ++FE+M
Sbjct: 718 SDVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEEM 777

Query: 73  PQR----NLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGEL 124
            +     + V++ S+++   H   V+   E F+ M      P +  ++ +I    R G++
Sbjct: 778 LRSRESPDHVTFVSVLSACSHAGLVERGLEYFEMMPDHGILPQIEHYSCVIDLLGRAGKI 837

Query: 125 EKARELFDLLPNKEDTACWNAMVAGY------AKIGNYNEAKKLLDAMPSKNIVSW 174
           +K +E    +P + +   W  ++         + I    EA ++L  +  +N V++
Sbjct: 838 DKIKEYIQRMPIEPNALIWRTVLVACRQSKDGSNIDLGREASRVLLEIEPQNPVNY 893


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 198/637 (31%), Positives = 329/637 (51%), Gaps = 60/637 (9%)

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE----MHLASKFFEAMEERDVVSWNLML 209
           G+ + A+ L D +P+  I  +N+++  Y+  G         S     + + +  ++  +L
Sbjct: 77  GDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVL 136

Query: 210 DGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
                L DL SA              ++     ++  YA+      A  +F +MP R+VV
Sbjct: 137 KACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVV 196

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAK---LDEAR------- 315
           AWNAM+A Y   G+  +     + M + +  + +T++     +A+   L + R       
Sbjct: 197 AWNAMLAGYALHGKYSDTIACLLLMQDDHAPNASTLVALLPLLAQHGALSQGRAVHAYSV 256

Query: 316 RLLDQMPYKN-IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMD 374
           R      +K+ +   TA++  Y +   +  A+++F+ +   + V W+ ++ G+  CGRM 
Sbjct: 257 RACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRML 316

Query: 375 EAINLFRQMV----------------------------------------NKDIVTWNTM 394
           EA +LF+ M+                                        + D+   N++
Sbjct: 317 EAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSL 376

Query: 395 IAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
           ++ YA+   +D A  +F++M   ++TVS++AL+SG++QN    +A ++F  M     + D
Sbjct: 377 LSMYAKAGLIDQATTLFDQM-VVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPD 435

Query: 455 HSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
            +T+   + AC+HLAALQ G+  H   I  G  ++  + N+LI MYAKCGRI  +  +F 
Sbjct: 436 VATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFD 495

Query: 515 DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574
                D++SWN++IAGY I+G   EA  LF +M  +   PD VTFI ++SACSH GLV  
Sbjct: 496 VMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTE 555

Query: 575 GLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGAC 634
           G + F  M   Y I P +EHY  M+DLL+R G LDEA++ ++GM +K +  +WG LLGAC
Sbjct: 556 GKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGAC 615

Query: 635 RMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPG 694
           R+H+NI LG+     + +L P+ T  + LLSN+ + AGR+DE  +VR+  +  G +K PG
Sbjct: 616 RVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPG 675

Query: 695 CSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           CSWIE+   +H F+ GD    +++EI   L  +   I
Sbjct: 676 CSWIEINGSLHAFIGGDRSHAQSSEIYQELDNILVDI 712



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 138/579 (23%), Positives = 243/579 (41%), Gaps = 106/579 (18%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRV----NDARKLFEQMPQRNLVSWNSMI 84
           G +  A  +F Q+       YN++I AY+  G              ++PQ N  ++  ++
Sbjct: 77  GDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVL 136

Query: 85  AGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
                   ++ AR +     R     DLF    ++  Y +      A  +F  +P + D 
Sbjct: 137 KACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPAR-DV 195

Query: 141 ACWNAMVAGYAKIGNYNEAKKLL-----DAMP-SKNIVSWNSMLSGY---TKNGEMHLAS 191
             WNAM+AGYA  G Y++    L     D  P +  +V+   +L+ +   ++   +H  S
Sbjct: 196 VAWNAMLAGYALHGKYSDTIACLLLMQDDHAPNASTLVALLPLLAQHGALSQGRAVHAYS 255

Query: 192 -KFFEAMEERD-VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRM 249
            +     + +D V+    +LD Y +   L  A + F+ +  +N V+W  ++ G+   GRM
Sbjct: 256 VRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRM 315

Query: 250 LEARRLFDQMPIR----------------------------------------NVVAWNA 269
           LEA  LF  M  +                                        ++ A N+
Sbjct: 316 LEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNS 375

Query: 270 MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
           +++ Y + G I++A  LF +M  ++ VS++ ++ GYV+  K DEA R+  +M   N+   
Sbjct: 376 LLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPD 435

Query: 330 TA-MIS--------GYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF 380
            A M+S          +Q+ +    + I   I +   +C N +I  YA+CGR+D +  +F
Sbjct: 436 VATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSIC-NALIDMYAKCGRIDLSRQIF 494

Query: 381 RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
             M  +DIV+WNTMIAGY               +GK                     +A 
Sbjct: 495 DVMPARDIVSWNTMIAGYG-----------IHGLGK---------------------EAT 522

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ-IHHLAIKSGYVNDLFVGNSLITM 499
            +F+ M  +  + D  T  C +SAC+H   +  G++  H +A K G    +     ++ +
Sbjct: 523 ALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDL 582

Query: 500 YAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGN 536
            A+ G +  A   F    P+  DV  W +L+    ++ N
Sbjct: 583 LARGGFLDEA-YQFIQGMPLKADVRVWGALLGACRVHKN 620



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 120/240 (50%), Gaps = 19/240 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP----Q 74
           N  ++   K+G +++A  +F QM  K+TV+Y++++S Y +NG+ ++A ++F +M     Q
Sbjct: 374 NSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQ 433

Query: 75  RNLVSWNSMIAGYLHNDKVKEAR----ELFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
            ++ +  S+I    H   ++  +     +  +    +      +I  Y + G ++ +R++
Sbjct: 434 PDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQI 493

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSMLSGYTKNGE 186
           FD++P + D   WN M+AGY   G   EA  L   M  +    + V++  ++S  + +G 
Sbjct: 494 FDVMPAR-DIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGL 552

Query: 187 MHLASKFFEAMEERDVVSWNL-----MLDGYVELDDLDSAWKFFQKIP-EQNVVSWVTML 240
           +    ++F  M  +  ++  +     M+D       LD A++F Q +P + +V  W  +L
Sbjct: 553 VTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALL 612


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 183/571 (32%), Positives = 308/571 (53%), Gaps = 21/571 (3%)

Query: 183 KNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVT 238
           ++G+++ A K F+ + +  V  WN M+ GY  ++  +S    ++ +   N+     ++  
Sbjct: 81  ESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPF 140

Query: 239 MLSGYARNGRMLEARRLFDQMPIR-----NVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           +L G+ ++  +   + L +   I      N+      I  +   G +  A ++F      
Sbjct: 141 LLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGW 200

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYK------NIAAQTAMISGYVQNKRMDEANQ 347
             V+W  ++ GY R  + +E++RL  +M  K      N      M+S   + K +     
Sbjct: 201 EVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKC 260

Query: 348 IFDK-----IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIR 402
           I++K     I   +++  N +I  +A CG MD A  +F +M  +D+++W +++ G+A   
Sbjct: 261 IYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTC 320

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
           ++D A K F++M   R+ VSW A+I G+L+     + L +F  M     K D  T+   L
Sbjct: 321 RIDLARKYFDQM-PERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSIL 379

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
           +ACAHL AL+LG        K+   ND F+GN+LI MY KCG ++ A+ +F +    D  
Sbjct: 380 TACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKF 439

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           +W ++I G A NG+  EA+ +F  M+   V PD +T+IGV+ AC+HVGLV  G   F  M
Sbjct: 440 TWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNM 499

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKL 642
              + I+P + HY CM+DLL RAG L EA E++  M +KPN+ +WG+LLGACR+H+N++L
Sbjct: 500 AVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQL 559

Query: 643 GRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKN 702
             +A  ++ ELEP+  + Y LL N++A   +W  +  VR  M   G +K PGCS +E+  
Sbjct: 560 AEMAANEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNG 619

Query: 703 QIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
            ++ F++GD    ++ EI   L+ +   + N
Sbjct: 620 IVYEFVAGDKSHPQSKEIYAKLENMKQDLSN 650



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 129/521 (24%), Positives = 238/521 (45%), Gaps = 78/521 (14%)

Query: 58  KNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWAL 113
           ++G V  ARK+F+++PQ ++  WN+MI GY   +  +    L+  M     +PD F++  
Sbjct: 81  ESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPF 140

Query: 114 MITCYTRK------------------------------------GELEKARELFDLLPNK 137
           ++  +T+                                     G +  AR++FD + + 
Sbjct: 141 LLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFD-MGDG 199

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK-NIVSWNS-----MLSGYTK----NGEM 187
            +   WN +++GY +   Y E+K+L   M  K   VS NS     MLS  +K     G  
Sbjct: 200 WEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGK 259

Query: 188 HLASKFF-EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARN 246
            + +K+  E + E +++  N ++D +    ++D+A   F ++  ++V+SW ++++G+A  
Sbjct: 260 CIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANT 319

Query: 247 GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWT--TMI 302
            R+  AR+ FDQMP R+ V+W AMI  Y++  + +E   LF +M   N  P  +T  +++
Sbjct: 320 CRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSIL 379

Query: 303 DGYVRIAKLDE---ARRLLDQMPYKN-IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV 358
                +  L+    A+  +D+   KN      A+I  Y +   +++A +IF+++   D  
Sbjct: 380 TACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKF 439

Query: 359 CWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            W  MI G A  G  +EA+ +F  M    V  D +T+  ++     +  +      F  M
Sbjct: 440 TWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNM 499

Query: 415 ----GKRRNTVSWNALISGFLQNEFHL-DALKIFVLMTQEGKKADHSTL--ACALSACAH 467
               G + N   +  ++   L    HL +AL++ + M  +       +L  AC +     
Sbjct: 500 AVQHGIKPNLTHYGCMVD-LLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQ 558

Query: 468 LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
           LA +    +I  L  ++G V  L     L  +YA C + +N
Sbjct: 559 LAEMA-ANEILELEPENGAVYVL-----LCNIYAACKKWKN 593



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 99/450 (22%), Positives = 180/450 (40%), Gaps = 78/450 (17%)

Query: 9   GNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKL 68
           G   S +F Q   I      G V  A KIF        VT+N ++S Y +  R  ++++L
Sbjct: 165 GFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRL 224

Query: 69  FEQMPQR-NLVSWNS---------------MIAG-YLHNDKVKEARELFDKMFRPDLFSW 111
           F +M ++   VS NS               ++ G  ++N  +KE       +  P+L   
Sbjct: 225 FIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEG------IVEPNLILE 278

Query: 112 ALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI 171
             +I  +   GE++ AR +FD +  + D   W ++V G+A     + A+K  D MP ++ 
Sbjct: 279 NALIDMFASCGEMDAARGVFDEMKTR-DVISWTSIVTGFANTCRIDLARKYFDQMPERDY 337

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAME--------------------------------- 198
           VSW +M+ GY +          F  M+                                 
Sbjct: 338 VSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTY 397

Query: 199 ------ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA 252
                 + D    N ++D Y +  +++ A K F ++ +++  +W  M+ G A NG   EA
Sbjct: 398 IDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEA 457

Query: 253 RRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMP-----ERNPVSWTTMID 303
             +F  M   +V    + +  ++ A    G + +    F  M      + N   +  M+D
Sbjct: 458 LTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVD 517

Query: 304 GYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYV---QNKRMDE--ANQIFDKIGTHDVV 358
              R   L EA  ++  MP K  +     + G     +N ++ E  AN+I + +   +  
Sbjct: 518 LLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILE-LEPENGA 576

Query: 359 CWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
            + ++   YA C +     N+ + M+ + I
Sbjct: 577 VYVLLCNIYAACKKWKNLHNVRKMMMERGI 606


>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
          Length = 617

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 176/461 (38%), Positives = 278/461 (60%), Gaps = 11/461 (2%)

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP--YKN 325
           N +I  Y++ G +  A ++F  MP+R+ VS+ +MIDGYV+   ++ AR L D MP   KN
Sbjct: 164 NCLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSMIDGYVKRGLIESARELFDLMPREVKN 223

Query: 326 IAAQTAMISGYVQNKR-MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
           + +  ++ISGY Q    +D A+ +F ++   D++ WN MI GY + GR+++A +LF  M 
Sbjct: 224 LISWNSIISGYAQTSDGVDIASNLFAEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDAMP 283

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
            +D+VTW TMI GYA++  +  A  +F++M   R+ VS+N++++G++QN++H++AL+IF 
Sbjct: 284 RRDVVTWATMIDGYAKLGFVHQAKTLFDQM-PHRDVVSYNSMMAGYVQNKYHMEALEIFS 342

Query: 445 LMTQEGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
            M +E     D +TL   LSA A L  L     +H   ++  +     +G +LI MY+KC
Sbjct: 343 DMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYSKC 402

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
           G IQ+A L+F+  +   +  WN++I G AI+G    A  +  ++    + PD +TF+GVL
Sbjct: 403 GSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVL 462

Query: 564 SACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPN 623
           +ACSH GLV  GL  FE M   + IEP ++HY CM+D+LSR+G ++ A  +++ M I+PN
Sbjct: 463 NACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIQEMPIEPN 522

Query: 624 AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVS 683
             IW T L AC  H+  + G +  + L        S Y LLSNM+A  G+W +V ++R  
Sbjct: 523 DVIWRTFLTACNHHKEFETGELVGKHLILQAGYNPSSYVLLSNMYASFGKWKDVRRIRTM 582

Query: 684 MEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTL 724
           M+    +K PGCSWIE+  ++H F         + E+ NTL
Sbjct: 583 MKERKIEKIPGCSWIELDGRVHEFF------VDSIEVSNTL 617



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 129/475 (27%), Positives = 240/475 (50%), Gaps = 61/475 (12%)

Query: 80  WNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLP 135
           WN++I  + H    K+A  LF  M       D FS +L++   +R G ++   ++  +L 
Sbjct: 93  WNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLKACSRLGFVKGGLQIHGIL- 151

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
            ++   C                           ++   N ++  Y K G +  A + F+
Sbjct: 152 -RKTGLC--------------------------SDLFLQNCLIGLYLKCGCLGFARQIFD 184

Query: 196 AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ--NVVSWVTMLSGYARNGRMLE-A 252
            M +RD VS+N M+DGYV+   ++SA + F  +P +  N++SW +++SGYA+    ++ A
Sbjct: 185 RMPQRDSVSFNSMIDGYVKRGLIESARELFDLMPREVKNLISWNSIISGYAQTSDGVDIA 244

Query: 253 RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLD 312
             LF +MP +++++WN+MI  YV+ G+IE+A  LF  MP R+ V+W TMIDGY ++  + 
Sbjct: 245 SNLFAEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVH 304

Query: 313 EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG-----THDVVCWNVMIKGY 367
           +A+ L DQMP++++ +  +M++GYVQNK   EA +IF  +      + D     +++   
Sbjct: 305 QAKTLFDQMPHRDVVSYNSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTLVIVLSAI 364

Query: 368 AQCGRMDEAINLFRQMVNKDIVTWN----TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
           AQ GR+ +A+++   +V K           +I  Y++   +  A+ +FE + + ++   W
Sbjct: 365 AQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFEGI-ENKSIDHW 423

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH-------LAALQLGRQ 476
           NA+I G   +     A  + + + +   K D  T    L+AC+H       L   +L R+
Sbjct: 424 NAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRR 483

Query: 477 IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD--ADPVDVISWNSLIA 529
            H +  +  +         ++ + ++ G I+ A+ L ++   +P DVI W + + 
Sbjct: 484 KHKIEPRLQHY------GCMVDILSRSGSIELAKNLIQEMPIEPNDVI-WRTFLT 531



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 102/294 (34%), Positives = 161/294 (54%), Gaps = 13/294 (4%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F QN  I    K G +  A +IF +M Q+++V++NSMI  Y K G +  AR+LF+ M
Sbjct: 158 SDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSMIDGYVKRGLIESARELFDLM 217

Query: 73  PQ--RNLVSWNSMIAGYLH-NDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARE 129
           P+  +NL+SWNS+I+GY   +D V  A  LF +M   DL SW  MI  Y + G +E A++
Sbjct: 218 PREVKNLISWNSIISGYAQTSDGVDIASNLFAEMPEKDLISWNSMIDGYVKHGRIEDAKD 277

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           LFD +P + D   W  M+ GYAK+G  ++AK L D MP +++VS+NSM++GY +N     
Sbjct: 278 LFDAMP-RRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMMAGYVQNKYHME 336

Query: 190 ASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV----SWVTML 240
           A + F  ME+      D  +  ++L    +L  L  A      I E+         V ++
Sbjct: 337 ALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALI 396

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
             Y++ G +  A  +F+ +  +++  WNAMI      G  E A  + +++  R+
Sbjct: 397 DMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRS 450



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/369 (30%), Positives = 186/369 (50%), Gaps = 23/369 (6%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR--PD 107
           N +I  Y K G +  AR++F++MPQR+ VS+NSMI GY+    ++ ARELFD M R   +
Sbjct: 164 NCLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSMIDGYVKRGLIESARELFDLMPREVKN 223

Query: 108 LFSWALMITCYTRKGE-LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           L SW  +I+ Y +  + ++ A  LF  +P K D   WN+M+ GY K G   +AK L DAM
Sbjct: 224 LISWNSIISGYAQTSDGVDIASNLFAEMPEK-DLISWNSMIDGYVKHGRIEDAKDLFDAM 282

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
           P +++V+W +M+ GY K G +H A   F+ M  RDVVS+N M+ GYV+      A + F 
Sbjct: 283 PRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVSYNSMMAGYVQNKYHMEALEIFS 342

Query: 227 KIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN----AMIAAYVQR 277
            + +++ +S      V +LS  A+ GR+ +A  +   +  +          A+I  Y + 
Sbjct: 343 DMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYSKC 402

Query: 278 GQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYV 337
           G I+ A  +F  +  ++   W  MI G       + A  +L Q+  ++I        G +
Sbjct: 403 GSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVL 462

Query: 338 ----QNKRMDEANQIFDKIGTHDVV-----CWNVMIKGYAQCGRMDEAINLFRQM-VNKD 387
                +  + E    F+ +     +      +  M+   ++ G ++ A NL ++M +  +
Sbjct: 463 NACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIQEMPIEPN 522

Query: 388 IVTWNTMIA 396
            V W T + 
Sbjct: 523 DVIWRTFLT 531



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 154/329 (46%), Gaps = 21/329 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I    K GR+E+A  +F  M +++ VT+ +MI  YAK G V+ A+ LF+QMP R++V
Sbjct: 260 NSMIDGYVKHGRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVV 319

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFDL 133
           S+NSM+AGY+ N    EA E+F  M       PD  +  ++++   + G L KA ++   
Sbjct: 320 SYNSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLY 379

Query: 134 LPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           +  K+         A++  Y+K G+   A  + + + +K+I  WN+M+ G   +G    A
Sbjct: 380 IVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESA 439

Query: 191 SKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLS 241
                 +E R    D +++  +L+       +      F+ +  ++ +      +  M+ 
Sbjct: 440 FDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVD 499

Query: 242 GYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEA---ARLFIEMPERNPVS 297
             +R+G +  A+ L  +MPI  N V W   + A     + E      +  I     NP S
Sbjct: 500 ILSRSGSIELAKNLIQEMPIEPNDVIWRTFLTACNHHKEFETGELVGKHLILQAGYNPSS 559

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
           +  + + Y    K  + RR+   M  + I
Sbjct: 560 YVLLSNMYASFGKWKDVRRIRTMMKERKI 588



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 148/293 (50%), Gaps = 18/293 (6%)

Query: 28  SGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGY 87
           S  V+ A  +F++M +K+ +++NSMI  Y K+GR+ DA+ LF+ MP+R++V+W +MI GY
Sbjct: 238 SDGVDIASNLFAEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDAMPRRDVVTWATMIDGY 297

Query: 88  LHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE----DTACW 143
                V +A+ LFD+M   D+ S+  M+  Y +     +A E+F  +  +     D    
Sbjct: 298 AKLGFVHQAKTLFDQMPHRDVVSYNSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTL 357

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN----SMLSGYTKNGEMHLASKFFEAMEE 199
             +++  A++G  ++A  +   +  K          +++  Y+K G +  A   FE +E 
Sbjct: 358 VIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFEGIEN 417

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRL 255
           + +  WN M+ G       +SA+    +I  +++    +++V +L+  + +G + E    
Sbjct: 418 KSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLC 477

Query: 256 FDQMPIRNVVA-----WNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMI 302
           F+ M  ++ +      +  M+    + G IE A  L  EMP E N V W T +
Sbjct: 478 FELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIQEMPIEPNDVIWRTFL 530



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 106/218 (48%), Gaps = 9/218 (4%)

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
           G+  +   WNA+I      +    AL +F LM + G   D  +++  L AC+ L  ++ G
Sbjct: 85  GEVEDPFLWNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLKACSRLGFVKGG 144

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
            QIH +  K+G  +DLF+ N LI +Y KCG +  A  +F      D +S+NS+I GY   
Sbjct: 145 LQIHGILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSMIDGYVKR 204

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG-LVDGGLKLFECMTEVYAIEPLVE 593
           G    A +LF+ M  E    + +++  ++S  +     VD    LF  M E   I     
Sbjct: 205 GLIESARELFDLMPRE--VKNLISWNSIISGYAQTSDGVDIASNLFAEMPEKDLIS---- 258

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
            +  MID   + GR+++A ++   M  + +   W T++
Sbjct: 259 -WNSMIDGYVKHGRIEDAKDLFDAMP-RRDVVTWATMI 294


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 202/592 (34%), Positives = 334/592 (56%), Gaps = 34/592 (5%)

Query: 170  NIVSWN-SMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI 228
            N+VS + + +S  T +     +S F    E++ ++ +       V L    + W F++ +
Sbjct: 1044 NVVSISLTFMSALTGSLTTRFSSVFLRVAEDQFLLGFPSSRRRPVSLSSNLATW-FYKYV 1102

Query: 229  PEQNVVSWVTMLSGYARNGRMLEARRLFDQM------PIRN-----VVAWNAMIAAYVQR 277
             + NV SW ++++  AR G  +EA R F  +      P R+     + + +A+      R
Sbjct: 1103 DKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGR 1162

Query: 278  GQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYV 337
               ++A   F+   E +    + +ID Y +  +L +AR L D++P +N+ + T+MI+GYV
Sbjct: 1163 MSHQQA---FVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYV 1219

Query: 338  QNKRMDEANQIFDKI---------GTHDVVCWNVMIKGYAQCGRMD-----EAINLF--R 381
            QN++ D A  +F            G +  +   VM+   + C R+      E ++ F  +
Sbjct: 1220 QNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVK 1279

Query: 382  QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALK 441
            +  +  I   NT++  YA+  Q   + K+F+ M + ++ +SWN++I+ + Q+    +AL+
Sbjct: 1280 KGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWM-EEKDDISWNSMIAVYAQSGLSGEALE 1338

Query: 442  IFVLMTQE-GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500
            +F  M +  G + +  TL+  L ACAH  AL+ G+ IH   IK     ++ VG S+I MY
Sbjct: 1339 VFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMY 1398

Query: 501  AKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
             KCGR++ A+  F      +V SW +++AGY ++G A EA+ +F +MV  GV P+ +TF+
Sbjct: 1399 CKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFV 1458

Query: 561  GVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKI 620
             VL+ACSH GLV+ G   F  M   Y IEP +EHY CM+DL  RAG L+EA+ ++K MK+
Sbjct: 1459 SVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKM 1518

Query: 621  KPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKV 680
            KP+  +WG+LLGACR+H+N+ LG IA +KL EL+P     Y LLSN++A+AGRW +VE++
Sbjct: 1519 KPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERM 1578

Query: 681  RVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            R+ M+     K PG S +E+K ++H FL GD +      I   L+ L  +++
Sbjct: 1579 RMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQ 1630



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 116/355 (32%), Positives = 184/355 (51%), Gaps = 9/355 (2%)

Query: 270 MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
           +I  Y   G+I  A  LF ++      +W  +I         ++A  L   M  + IAA 
Sbjct: 65  LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAAD 124

Query: 330 ----TAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFR 381
                 +I        +D    +   +  +    DV   N +I  Y +CG    A+ +F 
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFE 184

Query: 382 QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALK 441
           +M  +++V+W T+I+G      + +A +IF+E+   +N VSW A+I+G+++N+   +AL+
Sbjct: 185 KMRVRNVVSWTTVISGLISCGDLQEARRIFDEI-PSKNVVSWTAMINGYIRNQQPEEALE 243

Query: 442 IFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYA 501
           +F  M  E    +  T+   + AC  +  L LGR IH  AIK+     +++G +LI MY+
Sbjct: 244 LFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYS 303

Query: 502 KCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIG 561
           KCG I++A  +F+      + +WNS+I    ++G   EA+ LF EM    V PD +TFIG
Sbjct: 304 KCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIG 363

Query: 562 VLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVK 616
           VL AC H+  V  G   F  MT+ Y I P+ EHY CM +L +R+  LDEAF+  K
Sbjct: 364 VLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTK 418



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 177/394 (44%), Gaps = 48/394 (12%)

Query: 63   NDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKG 122
            N A   ++ + + N+ SWNS+IA         EA   F  + +  L        C     
Sbjct: 1093 NLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPC----- 1147

Query: 123  ELEKARELFDLLPNK------------EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN 170
             ++    L DL+  +             D    +A++  Y+K G   +A+ L D +P +N
Sbjct: 1148 TIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRN 1207

Query: 171  IVSWNSMLSGYTKNGEMHLASKFFEAM--EERDVVSW-NLMLDGYVELDDLDSAWKFFQK 227
            +VSW SM++GY +N +   A   F+    EE +V    N+ LD  V +  L +  +   K
Sbjct: 1208 VVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGK 1267

Query: 228  IPEQNVVSWV-------------TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
               + V  +V             T++  YA+ G+ L ++++FD M  ++ ++WN+MIA Y
Sbjct: 1268 GITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVY 1327

Query: 275  VQRGQIEEAARLFIEMPER-----NPVSWTTMIDGYVRIAKLDEARRLLDQ-----MPYK 324
             Q G   EA  +F  M        N V+ + ++        L   + + DQ     + Y 
Sbjct: 1328 AQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEY- 1386

Query: 325  NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
            N+   T++I  Y +  R++ A + FD++   +V  W  M+ GY   GR  EA+++F +MV
Sbjct: 1387 NVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMV 1446

Query: 385  NKDI----VTWNTMIAGYAQIRQMDDAVKIFEEM 414
               +    +T+ +++A  +    +++    F  M
Sbjct: 1447 RAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAM 1480



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 136/268 (50%), Gaps = 17/268 (6%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
           +  SL   G  G  VF QN  I    K G    A+K+F +M  +N V++ ++IS     G
Sbjct: 147 VHGSLIKYGFSGD-VFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCG 205

Query: 61  RVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMIT 116
            + +AR++F+++P +N+VSW +MI GY+ N + +EA ELF +M      P+ ++   +I 
Sbjct: 206 DLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIK 265

Query: 117 CYTRKGELEKARELFDL-LPNKEDTACW--NAMVAGYAKIGNYNEAKKLLDAMPSKNIVS 173
             T  G L   R + D  + N  +   +   A++  Y+K G+  +A ++ + MP K++ +
Sbjct: 266 ACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPT 325

Query: 174 WNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP 229
           WNSM++    +G    A   F  ME    + D +++  +L   V + ++     +F ++ 
Sbjct: 326 WNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMT 385

Query: 230 EQNVVSWVT-----MLSGYARNGRMLEA 252
           +   ++ +      M   YAR+  + EA
Sbjct: 386 QHYGIAPIPEHYECMTELYARSNNLDEA 413



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 153/345 (44%), Gaps = 38/345 (11%)

Query: 83  MIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTAC 142
           +I  Y  + ++  A  LF ++  P  F+W L+I   T  G  E+A  L+           
Sbjct: 65  LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYK---------- 114

Query: 143 WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV 202
            N +  G A       A K       K   ++ S+  G   +G   L    F      DV
Sbjct: 115 -NMVCQGIA-------ADKFTFPFVIKACTNFLSIDLGKVVHGS--LIKYGFSG----DV 160

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR 262
              N ++D Y +      A K F+K+  +NVVSW T++SG    G + EARR+FD++P +
Sbjct: 161 FVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSK 220

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWT--TMIDGYVRIAKLDEARRLL 318
           NVV+W AMI  Y++  Q EEA  LF  M   N  P  +T  ++I     +  L   R + 
Sbjct: 221 NVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIH 280

Query: 319 DQMPYKN-----IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRM 373
           D    KN     +   TA+I  Y +   + +A ++F+ +    +  WN MI      G  
Sbjct: 281 DYA-IKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLG 339

Query: 374 DEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            EA+NLF +M    V  D +T+  ++     I+ + +    F  M
Sbjct: 340 QEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRM 384



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 177/398 (44%), Gaps = 63/398 (15%)

Query: 50   NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL- 108
            +++I  Y+K G++ DAR LF+++P RN+VSW SMI GY+ N++   A  LF      +  
Sbjct: 1181 SALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETE 1240

Query: 109  --------FSWALMITCYTR------KGELEKARELFDLLPNKEDTACWNAMVAGYAKIG 154
                        +M++  +       KG  E                  N ++  YAK G
Sbjct: 1241 VEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCG 1300

Query: 155  NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE 214
                +KK+ D M  K+ +SWNSM++ Y ++G    A + F  M     V +N +    V 
Sbjct: 1301 QPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVL 1360

Query: 215  LDDLDS-AWKFFQKIPEQ--------NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
            L    + A +  + I +Q        NV    +++  Y + GR+  A++ FD+M  +NV 
Sbjct: 1361 LACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVK 1420

Query: 266  AWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
            +W AM+A Y   G+ +EA  +F +M     + N +++ +++        ++E     + M
Sbjct: 1421 SWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAM 1480

Query: 322  PYKNIAAQTAMISGYVQNKRMDEANQIFD-KIGTHDVVCWNVMIKGYAQCGRMDEAINLF 380
             +K                        +D + G     C   M+  + + G ++EA NL 
Sbjct: 1481 KHK------------------------YDIEPGIEHYGC---MVDLFGRAGCLNEAYNLI 1513

Query: 381  RQM-VNKDIVTWNTMIAGYAQIRQMDD-----AVKIFE 412
            ++M +  D V W +++ G  +I +  D     A K+FE
Sbjct: 1514 KRMKMKPDFVVWGSLL-GACRIHKNVDLGEIAAQKLFE 1550



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 159/366 (43%), Gaps = 27/366 (7%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           I S +S    +T   +I  Y+ +GR+  A  LF Q+      +WN +I     N   ++A
Sbjct: 51  IRSGLSNDQLLT-RKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQA 109

Query: 97  RELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAG 149
             L+  M       D F++  +I   T    ++  + +   L       D    N ++  
Sbjct: 110 LMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDF 169

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML 209
           Y K G+   A K+ + M  +N+VSW +++SG    G++  A + F+ +  ++VVSW  M+
Sbjct: 170 YFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMI 229

Query: 210 DGYVELDDLDSAWKFFQKIPEQNVV----SWVTMLSGYARNGRMLEARRLFDQMPIRN-- 263
           +GY+     + A + F+++  +N+     + V+++      G +   R + D   I+N  
Sbjct: 230 NGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYA-IKNCI 288

Query: 264 ---VVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
              V    A+I  Y + G I++A  +F  MP ++  +W +MI          EA  L  +
Sbjct: 289 EIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSE 348

Query: 321 MPYKNIAAQTAMISGY----VQNKRMDEANQIFDKIGTHDVVC-----WNVMIKGYAQCG 371
           M   N+        G     V  K + E    F ++  H  +      +  M + YA+  
Sbjct: 349 MERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSN 408

Query: 372 RMDEAI 377
            +DEA 
Sbjct: 409 NLDEAF 414



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 158/363 (43%), Gaps = 32/363 (8%)

Query: 20  KKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVS 79
           K I      GR+  AI +F Q+    T T+N +I A   NG    A  L++ M  + + +
Sbjct: 64  KLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAA 123

Query: 80  WN-------SMIAGYLHNDKVKEAR-ELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
                         +L  D  K     L    F  D+F    +I  Y + G    A ++F
Sbjct: 124 DKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVF 183

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
           + +    +   W  +++G    G+  EA+++ D +PSKN+VSW +M++GY +N +   A 
Sbjct: 184 EKM-RVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEAL 242

Query: 192 KFFEAMEERDVV----SWNLMLDGYVELDDL-------DSAWKFFQKIPEQNVVSWVTML 240
           + F+ M+  ++     +   ++    E+  L       D A K      E  V     ++
Sbjct: 243 ELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIK---NCIEIGVYLGTALI 299

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN----PV 296
             Y++ G + +A  +F+ MP +++  WN+MI +    G  +EA  LF EM   N     +
Sbjct: 300 DMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAI 359

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMP-YKNIAA----QTAMISGYVQNKRMDEANQIFDK 351
           ++  ++   V I  + E      +M  +  IA        M   Y ++  +DEA +   +
Sbjct: 360 TFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKE 419

Query: 352 IGT 354
           +G+
Sbjct: 420 VGS 422



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 106/263 (40%), Gaps = 79/263 (30%)

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW 298
           ++  Y + G    A ++F++M +RNVV+W  +I+  +  G ++EA R+F E+P +N VSW
Sbjct: 166 LIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSW 225

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----------------------------- 329
           T MI+GY+R  + +EA  L  +M  +NI                                
Sbjct: 226 TAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIK 285

Query: 330 ----------TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
                     TA+I  Y +   + +A ++F+ +    +  WN MI      G   EA+NL
Sbjct: 286 NCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNL 345

Query: 380 FRQM----VNKDIVT------------------------------------WNTMIAGYA 399
           F +M    V  D +T                                    +  M   YA
Sbjct: 346 FSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYA 405

Query: 400 QIRQMDDAVKIFEEMGKRRNTVS 422
           +   +D+A K  +E+G   N+ S
Sbjct: 406 RSNNLDEAFKSTKEVGSLANSPS 428



 Score = 82.4 bits (202), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 95/422 (22%), Positives = 189/422 (44%), Gaps = 50/422 (11%)

Query: 19   NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR--- 75
            N  +    K G+   + K+F  M +K+ +++NSMI+ YA++G   +A ++F  M +    
Sbjct: 1290 NTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGV 1349

Query: 76   --NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL----FSWALMITCYTRKGELEKARE 129
              N V+ ++++    H   ++  + + D++ + DL         +I  Y + G +E A++
Sbjct: 1350 RYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKK 1409

Query: 130  LFDLLPNKEDTACWNAMVAGYAKIGNYNEA----KKLLDAMPSKNIVSWNSMLSGYTKNG 185
             FD +  K +   W AMVAGY   G   EA     K++ A    N +++ S+L+  +  G
Sbjct: 1410 TFDRMKEK-NVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAG 1468

Query: 186  EMHLASKFFEAME-----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSWVTM 239
             +     +F AM+     E  +  +  M+D +     L+ A+   +++  + + V W ++
Sbjct: 1469 LVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSL 1528

Query: 240  LSGYARNGRMLE-----ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
            L G  R  + ++     A++LF+  P  N   +  +   Y   G+  +  R+ + M  R 
Sbjct: 1529 L-GACRIHKNVDLGEIAAQKLFELDP-DNCGYYVLLSNLYADAGRWADVERMRMLMKNRQ 1586

Query: 295  ---PVSWTTM-IDGYVRIAKLDEARRLLDQMPYKNIAAQTAMIS--GYVQNKRM------ 342
               P  ++ + + G V +  + +      +M YK +   T  +   GYV N         
Sbjct: 1587 LVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVD 1646

Query: 343  DEANQIFDKIGTHDV-VCWNVM----------IKGYAQCGRMDEAINLFRQMVNKDIVTW 391
            +E  +I  ++ +  + V + VM          IK    CG     I L  ++V++D V  
Sbjct: 1647 EEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVR 1706

Query: 392  NT 393
            ++
Sbjct: 1707 DS 1708



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 2/159 (1%)

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
           RQIH   I+SG  ND  +   LI +Y+  GRI  A LLF         +WN +I    IN
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEH 594
           G + +A+ L++ MV +G+A D  TF  V+ AC++   +D G  +   + + Y     V  
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIK-YGFSGDVFV 162

Query: 595 YACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
              +ID   + G    A ++ + M+++ N   W T++  
Sbjct: 163 QNNLIDFYFKCGHTRFALKVFEKMRVR-NVVSWTTVISG 200


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 211/703 (30%), Positives = 341/703 (48%), Gaps = 114/703 (16%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM----HLASKFFEAMEE 199
             +VA Y   G  + A  +L+ +     V WN ++  + K G +    +++ +   A   
Sbjct: 100 TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 159

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRL 255
            D  +   +L    EL        F   I     E NV     +++ Y+R G + EA  +
Sbjct: 160 PDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 219

Query: 256 FDQMP---IRNVVAWNAMIAAYVQRGQIEEAARLFIEM---------------------- 290
           FD++    I +V++WN++++A+V+      A  LF +M                      
Sbjct: 220 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 279

Query: 291 ---------PERNPVSWTT--------------MIDGYVRIAKLDEARRLLDQMPYKNIA 327
                    P+   V                  +ID Y +   ++ A ++ + M +K++ 
Sbjct: 280 PACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVV 339

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQM 383
           +  AM++GY Q+   + A ++F  +       DVV W  +I GY+Q G   EA+NLFRQM
Sbjct: 340 SWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 399

Query: 384 V-------------------------------------------------NKDIVTWNTM 394
           +                                                 ++D++ +N +
Sbjct: 400 IFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNAL 459

Query: 395 IAGYAQIRQMDDAVKIFEEMG-KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE--GK 451
           I  Y++ R    A  IF+++  + RN V+W  +I G  Q     DALK+FV M  E  G 
Sbjct: 460 IDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGV 519

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND--LFVGNSLITMYAKCGRIQNA 509
             +  T++C L ACAHLAA+++G+QIH   ++         FV N LI MY+KCG +  A
Sbjct: 520 APNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTA 579

Query: 510 ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
             +F        ISW S++ GY ++G  +EA+ +F++M   G  PD +TF+ VL ACSH 
Sbjct: 580 RHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHC 639

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629
           G+VD GL  F+ M+  Y + P  EHYAC IDLL+R+GRLD+A+  VK M ++P A +W  
Sbjct: 640 GMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVA 699

Query: 630 LLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689
           LL ACR+H N++L   A+ KL E+  +    Y L+SN++A AGRW +V ++R  M+ SG 
Sbjct: 700 LLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGI 759

Query: 690 QKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +K+PGCSW++ +    +F  GD     + +I   L++L  +I+
Sbjct: 760 KKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIK 802



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 130/519 (25%), Positives = 225/519 (43%), Gaps = 112/519 (21%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQK---NTVTYNSMISAYAKNGRVNDARKLF 69
           S VF  N  +    + G +EEA  IF +++Q+   + +++NS++SA+ K+     A  LF
Sbjct: 195 SNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLF 254

Query: 70  EQMP----------QRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMI 115
            +M           + +++S  +++        V + +E+     R    PD+F    +I
Sbjct: 255 SKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALI 314

Query: 116 TCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI---- 171
             Y + G +E A ++F+++  K D   WNAMVAGY++ GN+  A +L   M  +NI    
Sbjct: 315 DAYAKCGLMENAVKVFNMMEFK-DVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDV 373

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAM---------------------------------- 197
           V+W ++++GY++ G  H A   F  M                                  
Sbjct: 374 VTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAY 433

Query: 198 ---------------EERDVVSWNLMLDGYVELDDLDSAWKFFQKIP--EQNVVSWVTML 240
                          E+ D++ +N ++D Y +     +A   F  IP  E+NVV+W  M+
Sbjct: 434 SLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMI 493

Query: 241 SGYARNGRMLEARRLFDQMPIRNV-VAWNA--------------------MIAAYVQRGQ 279
            G+A+ G   +A +LF +M      VA NA                     I AYV R  
Sbjct: 494 GGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHH 553

Query: 280 IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQN 339
             E++  F+            +ID Y +   +D AR + D M  K+  + T+M++GY  +
Sbjct: 554 RYESSAYFVA---------NCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMH 604

Query: 340 KRMDEANQIFDKIG----THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT----- 390
            R  EA  IFDK+       D + + V++   + CG +D+ ++ F  M     +T     
Sbjct: 605 GRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEH 664

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
           +   I   A+  ++D A +  ++M      V W AL+S 
Sbjct: 665 YACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSA 703



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/410 (22%), Positives = 168/410 (40%), Gaps = 107/410 (26%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP--- 106
           N++I AYAK G + +A K+F  M  +++VSWN+M+AGY  +   + A ELF  M +    
Sbjct: 311 NALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIP 370

Query: 107 -DLFSWALMITCYTRKGELEKARELF------DLLPN----------------------- 136
            D+ +W  +I  Y+++G   +A  LF        LPN                       
Sbjct: 371 LDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEI 430

Query: 137 -------------------KEDTACWNAMVAGYAKIGNYNEAKKLLDAMP--SKNIVSWN 175
                               ED   +NA++  Y+K  ++  A+ + D +P   +N+V+W 
Sbjct: 431 HAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWT 490

Query: 176 SMLSGYTKNGEMHLASKFFEAM-------------------------------------- 197
            M+ G+ + G+ + A K F  M                                      
Sbjct: 491 VMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVL 550

Query: 198 -----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA 252
                E       N ++D Y +  D+D+A   F  + +++ +SW +M++GY  +GR  EA
Sbjct: 551 RHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEA 610

Query: 253 RRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMID 303
             +FD+M     + + + +  ++ A    G +++    F  M     ++     +   ID
Sbjct: 611 LDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAID 670

Query: 304 GYVRIAKLDEARRLLDQMPYKNIAAQ-TAMISGYVQNKRMDEANQIFDKI 352
              R  +LD+A R +  MP +  A    A++S    +  ++ A    +K+
Sbjct: 671 LLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKL 720



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 9/169 (5%)

Query: 11  KGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFE 70
           + S  F  N  I    K G V+ A  +F  MSQK+ +++ SM++ Y  +GR ++A  +F+
Sbjct: 556 ESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFD 615

Query: 71  QMPQRNLV----SWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRK 121
           +M +   V    ++  ++    H   V +    FD M       P    +A  I    R 
Sbjct: 616 KMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARS 675

Query: 122 GELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN 170
           G L+KA      +P +     W A+++      N   A+  L+ +   N
Sbjct: 676 GRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMN 724



 Score = 46.6 bits (109), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
           +++   +G  ++  Y  CG    A L+ +   P   + WN LI  +   G    AI +  
Sbjct: 92  FISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSC 151

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI------EPLVEHYACMI 599
            M+  G  PD  T   VL AC       G L  + C +  + +      E  V     ++
Sbjct: 152 RMLRAGTRPDHFTLPHVLKAC-------GELPSYRCGSAFHGLICCNGFESNVFICNALV 204

Query: 600 DLLSRAGRLDEA 611
            + SR G L+EA
Sbjct: 205 AMYSRCGSLEEA 216


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 189/542 (34%), Positives = 302/542 (55%), Gaps = 9/542 (1%)

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
           + DV   N +++ +    ++  A + F +    + VSW ++L+GY   G + EA+ ++ Q
Sbjct: 245 DSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQ 304

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
           MP R+++A N+MI  +  RG + EA +LF EM E++ V+W+ +I  + +    +EA R  
Sbjct: 305 MPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTF 364

Query: 319 DQMPYKNIAA-QTAMISGYVQNKRMDEAN------QIFDKIGTHDVV-CWNVMIKGYAQC 370
             M    +   +   +S       +   N       +  KIGT   +   N +I  Y++C
Sbjct: 365 VGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKC 424

Query: 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
           G +  A  LF +    D+++WN+MI+GY +   +D+A  IF+ M   ++ VSW+++ISG+
Sbjct: 425 GDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSM-PEKDVVSWSSMISGY 483

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
            QN+   + L +F  M   G K D +TL   +SACA LAAL+ G+ +H    ++G   ++
Sbjct: 484 AQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINV 543

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME 550
            +G +LI MY KCG ++ A  +F       + +WN+LI G A+NG    ++ +F  M   
Sbjct: 544 ILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKC 603

Query: 551 GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDE 610
            V P+ +TF+GVL AC H+GLVD G   F  M   + I+P V+HY CM+DLL RAG+L E
Sbjct: 604 HVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQE 663

Query: 611 AFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAE 670
           A E++  M + P+   WG LLGAC+ H + ++GR    KL EL+P     + LLSN++A 
Sbjct: 664 AEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYAS 723

Query: 671 AGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQ 730
            G+WD+V ++R  M      K PGCS IE    IH FL+GD        I + L  +A +
Sbjct: 724 KGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMK 783

Query: 731 IR 732
           ++
Sbjct: 784 LK 785



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 108/443 (24%), Positives = 216/443 (48%), Gaps = 32/443 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V+ +N  I        + +A ++F++ S  ++V++NS+++ Y + G V +A+ ++ QM
Sbjct: 246 SDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM 305

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF- 131
           P+R++++ NSMI  +     V EA +LFD+M   D+ +W+ +I C+ +    E+A   F 
Sbjct: 306 PERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFV 365

Query: 132 ----------DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
                     +++     +AC N +V    K+ +    K   ++     I   N+++  Y
Sbjct: 366 GMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESY----INLQNALIYMY 421

Query: 182 TKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
           +K G++ +A K F+     D++SWN M+ GY++ + +D+A   F  +PE++VVSW +M+S
Sbjct: 422 SKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMIS 481

Query: 242 GYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPER---- 293
           GYA+N    E   LF +M +           ++I+A  +   +E+   +   +       
Sbjct: 482 GYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTI 541

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
           N +  TT+ID Y++   ++ A  +   M  K I+   A+I G   N  ++ +  +F  + 
Sbjct: 542 NVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMK 601

Query: 354 THDVVCWNVMIKG-YAQC---GRMDEAINLFRQMVN-----KDIVTWNTMIAGYAQIRQM 404
              V    +   G    C   G +DE  + F  M++      ++  +  M+    +  ++
Sbjct: 602 KCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKL 661

Query: 405 DDAVKIFEEMGKRRNTVSWNALI 427
            +A ++   M    +  +W AL+
Sbjct: 662 QEAEELLNRMPMTPDVATWGALL 684



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 75/148 (50%), Gaps = 8/148 (5%)

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
           A  ++  M      AD+ T    + AC+   +    +Q+H+  +K G+ +D++V N+LI 
Sbjct: 197 AFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLIN 256

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV--APDP 556
            ++ C  + +A  +F ++  +D +SWNS++AGY   GN  EA  ++ +M    +  +   
Sbjct: 257 CFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSM 316

Query: 557 VTFIGVLSACSHVGLVDGGLKLFECMTE 584
           +   G+       GLV    KLF+ M E
Sbjct: 317 IVLFGMR------GLVVEACKLFDEMLE 338



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 13/157 (8%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ----RNLVSWNS 82
           K G VE A+++F  M +K   T+N++I   A NG V  +  +F  M +     N +++  
Sbjct: 555 KCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMG 614

Query: 83  MIAGYLHNDKVKEARELF-----DKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
           ++    H   V E +  F     D   +P++  +  M+    R G+L++A EL + +P  
Sbjct: 615 VLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMT 674

Query: 138 EDTACWNAMVAGYAKIGNYNE----AKKLLDAMPSKN 170
            D A W A++    K G+        +KL++  P  +
Sbjct: 675 PDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHD 711


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 211/703 (30%), Positives = 341/703 (48%), Gaps = 114/703 (16%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM----HLASKFFEAMEE 199
             +VA Y   G  + A  +L+ +     V WN ++  + K G +    +++ +   A   
Sbjct: 93  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 152

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRL 255
            D  +   +L    EL        F   I     E NV     +++ Y+R G + EA  +
Sbjct: 153 PDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 212

Query: 256 FDQMP---IRNVVAWNAMIAAYVQRGQIEEAARLFIEM---------------------- 290
           FD++    I +V++WN++++A+V+      A  LF +M                      
Sbjct: 213 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 272

Query: 291 ---------PERNPVSWTT--------------MIDGYVRIAKLDEARRLLDQMPYKNIA 327
                    P+   V                  +ID Y +   ++ A ++ + M +K++ 
Sbjct: 273 PACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVV 332

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQM 383
           +  AM++GY Q+   + A ++F  +       DVV W  +I GY+Q G   EA+NLFRQM
Sbjct: 333 SWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 392

Query: 384 V-------------------------------------------------NKDIVTWNTM 394
           +                                                 ++D++ +N +
Sbjct: 393 IFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNAL 452

Query: 395 IAGYAQIRQMDDAVKIFEEMG-KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE--GK 451
           I  Y++ R    A  IF+++  + RN V+W  +I G  Q     DALK+FV M  E  G 
Sbjct: 453 IDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGV 512

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND--LFVGNSLITMYAKCGRIQNA 509
             +  T++C L ACAHLAA+++G+QIH   ++         FV N LI MY+KCG +  A
Sbjct: 513 APNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTA 572

Query: 510 ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
             +F        ISW S++ GY ++G  +EA+ +F++M   G  PD +TF+ VL ACSH 
Sbjct: 573 RHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHC 632

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629
           G+VD GL  F+ M+  Y + P  EHYAC IDLL+R+GRLD+A+  VK M ++P A +W  
Sbjct: 633 GMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVA 692

Query: 630 LLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689
           LL ACR+H N++L   A+ KL E+  +    Y L+SN++A AGRW +V ++R  M+ SG 
Sbjct: 693 LLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGI 752

Query: 690 QKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +K+PGCSW++ +    +F  GD     + +I   L++L  +I+
Sbjct: 753 KKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIK 795



 Score =  151 bits (381), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 130/519 (25%), Positives = 225/519 (43%), Gaps = 112/519 (21%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQK---NTVTYNSMISAYAKNGRVNDARKLF 69
           S VF  N  +    + G +EEA  IF +++Q+   + +++NS++SA+ K+     A  LF
Sbjct: 188 SNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLF 247

Query: 70  EQMP----------QRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMI 115
            +M           + +++S  +++        V + +E+     R    PD+F    +I
Sbjct: 248 SKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALI 307

Query: 116 TCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI---- 171
             Y + G +E A ++F+++  K D   WNAMVAGY++ GN+  A +L   M  +NI    
Sbjct: 308 DAYAKCGLMENAVKVFNMMEFK-DVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDV 366

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAM---------------------------------- 197
           V+W ++++GY++ G  H A   F  M                                  
Sbjct: 367 VTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAY 426

Query: 198 ---------------EERDVVSWNLMLDGYVELDDLDSAWKFFQKIP--EQNVVSWVTML 240
                          E+ D++ +N ++D Y +     +A   F  IP  E+NVV+W  M+
Sbjct: 427 SLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMI 486

Query: 241 SGYARNGRMLEARRLFDQMPIRNV-VAWNA--------------------MIAAYVQRGQ 279
            G+A+ G   +A +LF +M      VA NA                     I AYV R  
Sbjct: 487 GGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHH 546

Query: 280 IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQN 339
             E++  F+            +ID Y +   +D AR + D M  K+  + T+M++GY  +
Sbjct: 547 RYESSAYFVA---------NCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMH 597

Query: 340 KRMDEANQIFDKIG----THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT----- 390
            R  EA  IFDK+       D + + V++   + CG +D+ ++ F  M     +T     
Sbjct: 598 GRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEH 657

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
           +   I   A+  ++D A +  ++M      V W AL+S 
Sbjct: 658 YACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSA 696



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/410 (22%), Positives = 168/410 (40%), Gaps = 107/410 (26%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP--- 106
           N++I AYAK G + +A K+F  M  +++VSWN+M+AGY  +   + A ELF  M +    
Sbjct: 304 NALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIP 363

Query: 107 -DLFSWALMITCYTRKGELEKARELF------DLLPN----------------------- 136
            D+ +W  +I  Y+++G   +A  LF        LPN                       
Sbjct: 364 LDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEI 423

Query: 137 -------------------KEDTACWNAMVAGYAKIGNYNEAKKLLDAMP--SKNIVSWN 175
                               ED   +NA++  Y+K  ++  A+ + D +P   +N+V+W 
Sbjct: 424 HAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWT 483

Query: 176 SMLSGYTKNGEMHLASKFFEAM-------------------------------------- 197
            M+ G+ + G+ + A K F  M                                      
Sbjct: 484 VMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVL 543

Query: 198 -----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA 252
                E       N ++D Y +  D+D+A   F  + +++ +SW +M++GY  +GR  EA
Sbjct: 544 RHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEA 603

Query: 253 RRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMID 303
             +FD+M     + + + +  ++ A    G +++    F  M     ++     +   ID
Sbjct: 604 LDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAID 663

Query: 304 GYVRIAKLDEARRLLDQMPYKNIAAQ-TAMISGYVQNKRMDEANQIFDKI 352
              R  +LD+A R +  MP +  A    A++S    +  ++ A    +K+
Sbjct: 664 LLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKL 713



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 9/169 (5%)

Query: 11  KGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFE 70
           + S  F  N  I    K G V+ A  +F  MSQK+ +++ SM++ Y  +GR ++A  +F+
Sbjct: 549 ESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFD 608

Query: 71  QMPQRNLV----SWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRK 121
           +M +   V    ++  ++    H   V +    FD M       P    +A  I    R 
Sbjct: 609 KMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARS 668

Query: 122 GELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN 170
           G L+KA      +P +     W A+++      N   A+  L+ +   N
Sbjct: 669 GRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMN 717



 Score = 46.6 bits (109), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
           +++   +G  ++  Y  CG    A L+ +   P   + WN LI  +   G    AI +  
Sbjct: 85  FISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSC 144

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI------EPLVEHYACMI 599
            M+  G  PD  T   VL AC       G L  + C +  + +      E  V     ++
Sbjct: 145 RMLRAGTRPDHFTLPHVLKAC-------GELPSYRCGSAFHGLICCNGFESNVFICNALV 197

Query: 600 DLLSRAGRLDEA 611
            + SR G L+EA
Sbjct: 198 AMYSRCGSLEEA 209


>gi|242066458|ref|XP_002454518.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
 gi|241934349|gb|EES07494.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
          Length = 834

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 227/798 (28%), Positives = 368/798 (46%), Gaps = 137/798 (17%)

Query: 60  GRVNDARKLFEQMPQRNLVSWNSMIAGY--LHNDKVKEARELFDKMFRPDLFSWALMITC 117
           GR   A+  F      + V      AG+  L   +   AR L    F P +F    ++  
Sbjct: 17  GRPTPAQAAFLATATFSHVYQLCASAGHSALATGQAAHARMLVSG-FVPTMFVSNCLLQM 75

Query: 118 YTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSM 177
           Y R G    A  +FD +P++ DT  WN M+  YA +G+   A  LL  MP  ++VSWN++
Sbjct: 76  YARCGGAAHAHGVFDTMPHR-DTVSWNTMLTAYAHMGDTGMATSLLCVMPDPDVVSWNAL 134

Query: 178 LSGYTKNG----------EM-----------------------------HLASKFFEAME 198
           LSGY + G          EM                              + +   +   
Sbjct: 135 LSGYCQRGMFRDLVGLSIEMARCGVAPDRTTLAVLLKACGGLDDLALGVQIHALAVKTGL 194

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARN------------ 246
           E DV + + ++D Y +   L+ A  FF  + E+N VSW  +++G  +N            
Sbjct: 195 EMDVRAGSALVDMYGKCRSLEDALHFFHGMGERNSVSWGAVIAGCVQNEQYMRGLELLCR 254

Query: 247 ---------GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
                     R L A  + ++     VV   A++  Y +   + +A R F  +P     +
Sbjct: 255 CKAITCLSTARQLHAHAIKNKFSSDRVVG-TAIVDVYAKADSLVDARRAFFGLPNHTVET 313

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG---------------------- 335
              M+ G VR     EA +L   M    I      +SG                      
Sbjct: 314 CNAMMVGLVRTGLGAEAMQLFQFMTRSGIGFGVVSLSGVFSACAEVKGFDVDVCVRNAIL 373

Query: 336 --YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAI----NLFRQMVNKDIV 389
             Y + K + EA  +F ++   D V WN +I    Q    ++ I     + R  +  D  
Sbjct: 374 DLYGKCKALVEAYLVFQEMEQRDSVSWNTIIAALEQNECYEDTIVHLNEMLRSGMEADDF 433

Query: 390 TWNTMIAGYAQIRQMD-----------------------------------DAVKIFEEM 414
           T+ +++   A ++ ++                                   +A+K+ + +
Sbjct: 434 TYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEALKLHDRI 493

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
           G +   VSWN++I+GF  N+   +A K F  M   G K DH T A  L +CA+LA ++LG
Sbjct: 494 GGQE-LVSWNSIIAGFSLNKQSEEAQKFFSEMLDMGVKPDHFTYATVLDSCANLATIELG 552

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
           +QIH   IK   + D F+ ++L+ MYAKCG + +++L+F+    +D +SWN++I GYA++
Sbjct: 553 KQIHGQIIKQEMLGDEFISSTLVDMYAKCGNMPDSQLMFEKVQKLDFVSWNAMICGYALH 612

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEH 594
           G   EA+++FE      VAP+  TF+ VL ACSHVGL+D G + F  MT  Y +EP +EH
Sbjct: 613 GQGFEALEMFERTQKANVAPNHATFVAVLRACSHVGLLDDGCRYFHLMTSRYKLEPQLEH 672

Query: 595 YACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE 654
           +ACM           EA + ++ M ++ +A IW TLL  C++ Q++++   A   +  L+
Sbjct: 673 FACM--------GPQEALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAETAASNVLRLD 724

Query: 655 PQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQ 714
           P  +S Y LLSN++AE+G+W +V + R  M     +K+PGCSWIEV++++H FL G+   
Sbjct: 725 PDDSSVYILLSNVYAESGKWVDVSRTRRLMRQGRLKKEPGCSWIEVQSEMHGFLVGEKVH 784

Query: 715 CRTAEICNTLKTLAAQIR 732
            R+ E+   L  L  +++
Sbjct: 785 PRSREVYEMLNNLICEMK 802


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 209/716 (29%), Positives = 365/716 (50%), Gaps = 62/716 (8%)

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKAR 128
           P +N+  WNS+I  +  N    +A E + K+      PD +++  +I       + E   
Sbjct: 67  PAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGD 126

Query: 129 ELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
            ++  +     + D    NA+V  Y+++G  + A+++ D MP +++VSWNS++SGY+ +G
Sbjct: 127 LVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHG 186

Query: 186 EMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKF--FQKIPEQNVVSWVT- 238
               A + +  +       D  + + +L  +  L  +        F      N VS V  
Sbjct: 187 YYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNN 246

Query: 239 -MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIE-MPERNP- 295
            +L+ Y +  R  +ARR+FD+M +R+ V +N MI  Y++   +EE+ ++F+E + +  P 
Sbjct: 247 GLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLENLDQFKPD 306

Query: 296 -VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA----MISGYVQNKRMDEANQIFD 350
            ++ T+++     +  L  A+ + + M       ++     +I  Y +   M  A  +F+
Sbjct: 307 ILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFN 366

Query: 351 KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV----NKDIVTW--------------- 391
            +   D V WN +I GY Q G + EA+ LF+ M+      D +T+               
Sbjct: 367 SMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKF 426

Query: 392 --------------------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFL 431
                               N +I  YA+  ++ D++KIF  MG   +TV+WN +IS  +
Sbjct: 427 GKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTL-DTVTWNTVISACV 485

Query: 432 QNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLF 491
           +       L++   M +     D +T    L  CA LAA +LG++IH   ++ GY ++L 
Sbjct: 486 RFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQ 545

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
           +GN+LI MY+KCG ++++  +F+     DV++W  +I  Y + G   +A++ F +M   G
Sbjct: 546 IGNALIEMYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKALESFVDMEKSG 605

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
           + PD V FI ++ ACSH GLV+ GL  FE M   Y I+P++EHYAC++DLLSR+ ++ +A
Sbjct: 606 IVPDSVVFIALIYACSHSGLVEKGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKA 665

Query: 612 FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEA 671
            E ++ M I+P+A IW ++L ACR   +++       ++ EL P       L SN +A  
Sbjct: 666 EEFIQAMPIEPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAAL 725

Query: 672 GRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
            +WD+V  +R S+     +K PG SWIE+  ++H F SGD    ++  I  +L+ L
Sbjct: 726 RKWDKVSLIRKSVRDKHIKKNPGYSWIEIGKKVHVFCSGDDSAPQSEAIHKSLEIL 781



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 158/698 (22%), Positives = 287/698 (41%), Gaps = 153/698 (21%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQ-KNTVTYNSMISAYAKN 59
           + A + S+G  GS  F+  K I +         ++ +F ++S  KN   +NS+I A++KN
Sbjct: 26  IHALVISLGLDGSDFFS-GKLIDKYSHFRAPASSLSVFRRVSPAKNVYIWNSIIRAFSKN 84

Query: 60  GRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM-------------FRP 106
           G    A + + ++ +   VS +     Y     +K    LFD               F  
Sbjct: 85  GWFPKALEFYGKLRESK-VSPDK----YTFPSVIKACAGLFDAEMGDLVYKQILEMGFES 139

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA------- 159
           DL+    ++  Y+R G L +AR++FD +P + D   WN++++GY+  G Y EA       
Sbjct: 140 DLYVGNALVDMYSRMGLLSRARQVFDEMPVR-DLVSWNSLISGYSSHGYYEEALEIYHEL 198

Query: 160 ------------KKLLDAMPSKNIVSWNSMLSGYT-----------KNGEMHLASKF--- 193
                         +L A  +  +V     L G+T            NG + +  KF   
Sbjct: 199 RNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLKFSRP 258

Query: 194 ------FEAMEERDVVSWNLMLDGYVELDDLDSAWKFF-----QKIPEQNVVSWVTMLSG 242
                 F+ M  RD V++N M+ GY++L+ ++ + K F     Q  P+   V+ V    G
Sbjct: 259 TDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLENLDQFKPDILTVTSVLCACG 318

Query: 243 ---------------------------------YARNGRMLEARRLFDQMPIRNVVAWNA 269
                                            YA+ G M+ AR +F+ M  ++ V+WN+
Sbjct: 319 HLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNS 378

Query: 270 MIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARRL----LDQM 321
           +I+ Y+Q G + EA +LF  M     + + +++  +I    R+A L   + L    +   
Sbjct: 379 IISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKSG 438

Query: 322 PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
            Y +++   A+I  Y +   + ++ +IF+ +GT D V WN +I    + G     + +  
Sbjct: 439 IYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTT 498

Query: 382 QM----VNKDIVTW-----------------------------------NTMIAGYAQIR 402
           QM    V  D+ T+                                   N +I  Y++  
Sbjct: 499 QMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCG 558

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
            ++ + ++FE M  RR+ V+W  +I  +        AL+ FV M + G   D       +
Sbjct: 559 CLESSFRVFERMS-RRDVVTWTGMIYAYGMYGEGEKALESFVDMEKSGIVPDSVVFIALI 617

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGN--SLITMYAKCGRIQNAELLFKDADPV- 519
            AC+H   ++ G       +K+ Y  D  + +   ++ + ++  +I  AE  F  A P+ 
Sbjct: 618 YACSHSGLVEKGLACFE-KMKTHYKIDPMIEHYACVVDLLSRSQKISKAE-EFIQAMPIE 675

Query: 520 -DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
            D   W S++     +G+   A ++    ++E    DP
Sbjct: 676 PDASIWASVLRACRTSGDMETAERV-SRRIIELNPDDP 712



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 99/182 (54%)

Query: 394 MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA 453
           +I  Y+  R    ++ +F  +   +N   WN++I  F +N +   AL+ +  + +     
Sbjct: 45  LIDKYSHFRAPASSLSVFRRVSPAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSP 104

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
           D  T    + ACA L   ++G  ++   ++ G+ +DL+VGN+L+ MY++ G +  A  +F
Sbjct: 105 DKYTFPSVIKACAGLFDAEMGDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVF 164

Query: 514 KDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVD 573
            +    D++SWNSLI+GY+ +G   EA++++ E+    + PD  T   VL A +++ +V 
Sbjct: 165 DEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVK 224

Query: 574 GG 575
            G
Sbjct: 225 QG 226


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 174/440 (39%), Positives = 268/440 (60%), Gaps = 13/440 (2%)

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
           ++I  Y     L  A++L      +++ +  AMI GYV+   M     +FD++   DV+ 
Sbjct: 40  SLIHLYANGKDLGAAKQLFSLCSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVIS 99

Query: 360 WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRN 419
           WN +I GYA  G++DEA  LF +M  +++V+WN+M++G+ +   +++A  +F EM   R+
Sbjct: 100 WNTIINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEM-PCRD 158

Query: 420 TVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHH 479
            VSWN++++ + Q     +AL +F  M   G K   +T+   LSACAHL AL  G  +H 
Sbjct: 159 VVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLH- 217

Query: 480 LAIKSGYVND------LFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
                 Y+ND        VG +L+ MYAKCG+I  A  +F   +  DV++WN++IAG AI
Sbjct: 218 -----TYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAI 272

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVE 593
           +G+  EA +LF+EM    V P+ +TF+ +LSACSH G+VD G KL +CM+  Y IEP VE
Sbjct: 273 HGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVE 332

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653
           HY C+IDLL+RAG L+EA E++  M ++PN    G LLG CR+H N +LG +  ++L  L
Sbjct: 333 HYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINL 392

Query: 654 EPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPK 713
           +P  +  Y LLSN++A A +WD+  KVR  M+ +G  K PG S IE+K  +H F++GD  
Sbjct: 393 QPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWS 452

Query: 714 QCRTAEICNTLKTLAAQIRN 733
              + +I + L  +  ++++
Sbjct: 453 HPESNKIYDKLNEIHTRLKS 472



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 90/265 (33%), Positives = 156/265 (58%), Gaps = 11/265 (4%)

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
           NS++  Y    ++  A + F    +RDVVSWN M+DGYV+  ++      F ++  ++V+
Sbjct: 39  NSLIHLYANGKDLGAAKQLFSLCSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVI 98

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
           SW T+++GYA  G++ EA+RLFD+MP RN+V+WN+M++ +V+ G +EEA  LF EMP R+
Sbjct: 99  SWNTIINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRD 158

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI----AAQTAMISGYVQNKRMDEANQIFD 350
            VSW +M+  Y +  K +EA  L DQM    +    A   +++S       +D+   +  
Sbjct: 159 VVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHT 218

Query: 351 KIGTHDV----VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDD 406
            I  + +    +    ++  YA+CG++  A  +F  M +KD++ WNT+IAG A    + +
Sbjct: 219 YINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKE 278

Query: 407 AVKIFEEMGK---RRNTVSWNALIS 428
           A ++F+EM +     N +++ A++S
Sbjct: 279 AQQLFKEMKEASVEPNDITFVAMLS 303



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 180/355 (50%), Gaps = 19/355 (5%)

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           D+   N+++  YA   +   AK+L      +++VSWN+M+ GY K GEM      F+ M 
Sbjct: 34  DSYIVNSLIHLYANGKDLGAAKQLFSLCSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMV 93

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
            RDV+SWN +++GY  +  +D A + F ++PE+N+VSW +MLSG+ + G + EA  LF +
Sbjct: 94  CRDVISWNTIINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSE 153

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEA 314
           MP R+VV+WN+M+A Y Q G+  EA  LF +M     +    +  +++     +  LD+ 
Sbjct: 154 MPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKG 213

Query: 315 RRLL----DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC 370
             L     D     N    TA++  Y +  ++  A Q+F+ + + DV+ WN +I G A  
Sbjct: 214 LHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIH 273

Query: 371 GRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM----GKRRNTVS 422
           G + EA  LF++M    V  + +T+  M++  +    +D+  K+ + M    G       
Sbjct: 274 GHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEH 333

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI 477
           ++ +I    +     +A+++   M  E    + S L   L  C      +LG  +
Sbjct: 334 YDCVIDLLARAGLLEEAMELIGTMPME---PNPSALGALLGGCRIHGNFELGEMV 385



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 175/343 (51%), Gaps = 18/343 (5%)

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           F  D +    +I  Y    +L  A++LF L  ++ D   WNAM+ GY K G     + + 
Sbjct: 31  FECDSYIVNSLIHLYANGKDLGAAKQLFSLCSDR-DVVSWNAMIDGYVKRGEMGHTRMVF 89

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWK 223
           D M  ++++SWN++++GY   G++  A + F+ M ER++VSWN ML G+V+  +++ A+ 
Sbjct: 90  DRMVCRDVISWNTIINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFG 149

Query: 224 FFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNA----MIAAYVQRGQ 279
            F ++P ++VVSW +ML+ YA+ G+  EA  LFDQM    V    A    +++A    G 
Sbjct: 150 LFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGA 209

Query: 280 IEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG 335
           +++   L   +     E N +  T ++D Y +  K+  A ++ + M  K++ A   +I+G
Sbjct: 210 LDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAG 269

Query: 336 YVQNKRMDEANQIFDKIGTHDV----VCWNVMIKGYAQCGRMDEAINLFRQM-----VNK 386
              +  + EA Q+F ++    V    + +  M+   +  G +DE   L   M     +  
Sbjct: 270 MAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEP 329

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
            +  ++ +I   A+   +++A+++   M    N  +  AL+ G
Sbjct: 330 KVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGG 372



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 179/343 (52%), Gaps = 25/343 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           SY+ N    +   GK   +  A ++FS  S ++ V++N+MI  Y K G +   R +F++M
Sbjct: 35  SYIVNSLIHLYANGKD--LGAAKQLFSLCSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRM 92

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD 132
             R+++SWN++I GY    K+ EA+ LFD+M   +L SW  M++ + + G +E+A  LF 
Sbjct: 93  VCRDVISWNTIINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFS 152

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------PSKNIVSWNSMLSGYTKNGE 186
            +P + D   WN+M+A YA+ G  NEA  L D M      P++  V   S+LS     G 
Sbjct: 153 EMPCR-DVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVV--SLLSACAHLGA 209

Query: 187 ----MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG 242
               +HL +   +   E + +    ++D Y +   +  A + F  +  ++V++W T+++G
Sbjct: 210 LDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAG 269

Query: 243 YARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMP-----ER 293
            A +G + EA++LF +M   +V    + + AM++A    G ++E  +L   M      E 
Sbjct: 270 MAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEP 329

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISG 335
               +  +ID   R   L+EA  L+  MP + N +A  A++ G
Sbjct: 330 KVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGG 372



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 11/178 (6%)

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
           T    + AC   +    G  +H   +KSG+  D ++ NSLI +YA    +  A+ LF   
Sbjct: 2   TYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLC 61

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGL 576
              DV+SWN++I GY   G       +F+ MV      D +++  +++  + VG +D   
Sbjct: 62  SDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCR----DVISWNTIINGYAIVGKIDEAK 117

Query: 577 KLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGAC 634
           +LF+ M E   +      +  M+    + G ++EAF +   M  + +   W ++L AC
Sbjct: 118 RLFDEMPERNLVS-----WNSMLSGFVKCGNVEEAFGLFSEMPCR-DVVSWNSML-AC 168


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 208/668 (31%), Positives = 349/668 (52%), Gaps = 66/668 (9%)

Query: 128 RELFDLLPNKEDTACWN------AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
           +EL  ++P       +N       +V+ ++K G+ NEA ++ + +  K    +++ML GY
Sbjct: 63  KELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGY 122

Query: 182 TKNGEMHLASKFFEAMEERDV--VSWNLMLDGYVELDDLDSAWKFFQKIPEQ-------- 231
            KN  +  A  F   M   DV  V +N      V  D+ D   K  ++I  Q        
Sbjct: 123 AKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNAD--LKRGKEIHGQLITNSFAA 180

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
           NV +   +++ YA+  ++ +A ++FD+MP R++V+WN +IA + Q G  ++A  L + M 
Sbjct: 181 NVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQ 240

Query: 292 ER----NPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMD 343
           +     + ++  T++     +  L   + +    +     K +   TA+   Y +   ++
Sbjct: 241 DEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVE 300

Query: 344 EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----------------- 386
            A  IFD +    VV WN M+ GY Q G  ++AI +F +M+ +                 
Sbjct: 301 TARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACA 360

Query: 387 ----------------------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
                                 DI   N++I+ Y++ +++D A  IF  +  R + VSWN
Sbjct: 361 DLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTH-VSWN 419

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
           A+I G+ QN    +AL  F  M   G K D  T+   + A A L+  +  + IH L I+S
Sbjct: 420 AMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRS 479

Query: 485 GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLF 544
               ++FV  +L+ MY+KCG I  A  LF       VI+WN++I GY  +G    A+ LF
Sbjct: 480 CLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLF 539

Query: 545 EEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSR 604
           ++M    V P+ +T++ V+SACSH GLVD GL+ F+ M + Y +EP ++HY  M+DLL R
Sbjct: 540 DKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGR 599

Query: 605 AGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALL 664
           AGR+ EA++ ++ M I P   ++G +LGAC++H+NI++G  A +KL EL P +   + LL
Sbjct: 600 AGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLL 659

Query: 665 SNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTL 724
           +N++A   +W +V +VR +ME  G +K PGCS +E++N++H+F SG     ++  I   L
Sbjct: 660 ANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFL 719

Query: 725 KTLAAQIR 732
           + L  +I+
Sbjct: 720 EELVYEIK 727



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 119/399 (29%), Positives = 195/399 (48%), Gaps = 31/399 (7%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF---- 100
           N      +++ YAK  +++DA K+F++MP+R+LVSWN++IAG+  N   K+A EL     
Sbjct: 181 NVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQ 240

Query: 101 DKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWN---AMVAGYAKIGNYN 157
           D+  RPD  +   ++      G L   + +             N   A+   Y+K G+  
Sbjct: 241 DEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVE 300

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYV 213
            A+ + D M  K +VSWNSM+ GY +NGE   A   FE M E  +    V+    L    
Sbjct: 301 TARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACA 360

Query: 214 ELDDLDSAWKFFQKIPEQ-----NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN 268
           +L DL+   KF  K  +Q     ++    +++S Y++  R+  A  +F+ +  R  V+WN
Sbjct: 361 DLGDLERG-KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWN 419

Query: 269 AMIAAYVQRGQIEEAARLFIEMPE--RNPVSWTTMIDGYVRIAKLDEARR-------LLD 319
           AMI  Y Q G++ EA   F EM      P S+ TM+     +A+L   R        ++ 
Sbjct: 420 AMILGYAQNGRVSEALNCFSEMKSLGMKPDSF-TMVSVIPALAELSVTRHAKWIHGLIIR 478

Query: 320 QMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
               KNI   TA++  Y +   +  A ++FD I    V+ WN MI GY   G    A++L
Sbjct: 479 SCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDL 538

Query: 380 FRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           F +M    V  + +T+ ++I+  +    +D+ ++ F+ M
Sbjct: 539 FDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSM 577



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 153/357 (42%), Gaps = 62/357 (17%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K G VE A  IF  M QK  V++NSM+  Y +NG    A  +FE+M +  +      I  
Sbjct: 295 KCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIME 354

Query: 87  YLHN-------DKVKEARELFDKM-FRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
            LH        ++ K   +  D++    D+     +I+ Y++   ++ A ++F+ L N  
Sbjct: 355 ALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNL-NGR 413

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPS------------------------------ 168
               WNAM+ GYA+ G  +EA      M S                              
Sbjct: 414 THVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIH 473

Query: 169 ---------KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLD 219
                    KNI    +++  Y+K G +H+A K F+ + +R V++WN M+DGY       
Sbjct: 474 GLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGR 533

Query: 220 SAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-----NVVAWNAM 270
           +A   F K+     E N +++++++S  + +G + E  R F  M        ++  + AM
Sbjct: 534 AALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAM 593

Query: 271 IAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDE-----ARRLLDQMP 322
           +    + G+I+EA      MP    ++    + G  +I K  E     A++L +  P
Sbjct: 594 VDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNP 650



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 127/273 (46%), Gaps = 23/273 (8%)

Query: 10  NKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLF 69
           N GS +   N  I+   K  RV+ A  IF+ ++ +  V++N+MI  YA+NGRV++A   F
Sbjct: 379 NLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCF 438

Query: 70  EQMPQRNL----VSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRK 121
            +M    +     +  S+I         + A+ +   + R     ++F    ++  Y++ 
Sbjct: 439 SEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKC 498

Query: 122 GELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP----SKNIVSWNSM 177
           G +  AR+LFD++ ++     WNAM+ GY   G    A  L D M       N +++ S+
Sbjct: 499 GAIHMARKLFDMISDRH-VITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSV 557

Query: 178 LSGYTKNGEMHLASKFFEAME-----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQN 232
           +S  + +G +    + F++M+     E  +  +  M+D       +  AW F + +P   
Sbjct: 558 ISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISP 617

Query: 233 VVSWVTMLSGYARNGRMLE-----ARRLFDQMP 260
            ++    + G  +  + +E     A++LF+  P
Sbjct: 618 GITVYGAMLGACKIHKNIEVGEKAAKKLFELNP 650


>gi|449443954|ref|XP_004139740.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g09040, mitochondrial-like [Cucumis sativus]
          Length = 1441

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 229/747 (30%), Positives = 377/747 (50%), Gaps = 81/747 (10%)

Query: 27  KSGRVEEAIKIFSQMSQ----KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNS 82
           + G   EA+K+F +M +     + +T  ++++AY   GR+ DARKLF Q+P  N+V+WN 
Sbjct: 220 RDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNAYVALGRLADARKLFTQIPNPNVVAWNV 279

Query: 83  MIAGYLHNDKVKEARELFDKMFRPDLFSW------------ALMITCYTRKGELEKAREL 130
           MI+G+      +EA   F ++ +  L +             +L +  Y      +  +E 
Sbjct: 280 MISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEG 339

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
            D     ++    +A+V  YAK    + AK++ +++  +NIV WN+ML G+ +NG     
Sbjct: 340 LD-----DNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEV 394

Query: 191 SKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSG 242
            +FF  M+    + D  ++  +      L  L+   +    + +    S +     ++  
Sbjct: 395 MEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDM 454

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PER--- 293
           YA++G + EAR+ F+ M I + V+WNA+I  YVQ    +EA  +F  M      P+    
Sbjct: 455 YAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSL 514

Query: 294 ------------------------------NPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
                                         +  + +++ID YV+   +  AR +   MP 
Sbjct: 515 ASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPS 574

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
           +N+ +  A+I+GY     ++EA  +F +I    +    V   G          +NL RQ 
Sbjct: 575 RNVVSVNALIAGYTMG-HLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQ- 632

Query: 384 VNKDIVTWN----------TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433
           ++  ++ W           +++  Y   ++  D+  +F E+   +  V W ALISG+ Q 
Sbjct: 633 IHGQVMKWGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQ 692

Query: 434 EFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG 493
             H  AL+ +  M  +    D +  A  L ACA +++LQ G++IH L   +G+  D    
Sbjct: 693 NHHEKALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTC 752

Query: 494 NSLITMYAKCGRIQNAELLFKDADPVD-VISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
           +SLI MYAKCG ++ +  +F++    + VISWNS+I G A NG A EA+++F++M  + +
Sbjct: 753 SSLIDMYAKCGDVKGSLQVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQQSI 812

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
            PD VTF+GVLSACSH G V  G K+F+ M   Y + P V+H  CM+D+L R G L+EA 
Sbjct: 813 IPDEVTFLGVLSACSHAGRVSEGRKVFDLMVNNYKLLPRVDHLGCMVDILGRWGFLNEAE 872

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672
           E +  +  K +  +W TLLGACR H +   G+ A +KL EL+PQ +S Y LLS+++AE+ 
Sbjct: 873 EFINKLGCKADPMLWSTLLGACRKHGDEVRGKRAADKLMELKPQSSSSYVLLSSIYAESE 932

Query: 673 RWDEVEKVRVSMEGSGAQKQPGCSWIE 699
            W     +R  M+  G +K PG SWIE
Sbjct: 933 NWSGAVSLRREMKLKGVKKLPGYSWIE 959



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 161/589 (27%), Positives = 281/589 (47%), Gaps = 95/589 (16%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----R 105
           N ++  Y K G V+ A+K F ++ ++++ +WNS+++ YL +       + F  M+    R
Sbjct: 80  NVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNHEVR 139

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKL 162
           P+ F++A++++  +   ++   R++   +        + C   ++  YAK     +A+ +
Sbjct: 140 PNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDARLV 199

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAW 222
            D                    G ++L           D VSW  ++ GYV       A 
Sbjct: 200 FD--------------------GALNL-----------DTVSWTALIAGYVRDGFPMEAV 228

Query: 223 KFFQKI------PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ 276
           K F ++      P+Q  ++ VT+++ Y   GR+ +AR+LF Q+P  NVVAWN MI+ + +
Sbjct: 229 KVFDRMQRVGHAPDQ--ITLVTVVNAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAK 286

Query: 277 RGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYK----NIAA 328
           RG  EEA   F+E+ +        S  +++     ++ L+    +  Q   +    N+  
Sbjct: 287 RGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYV 346

Query: 329 QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----- 383
            +A+++ Y +  +MD A Q+F+ +G  ++V WN M+ G+AQ G   E +  F  M     
Sbjct: 347 GSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGP 406

Query: 384 ----------------------------------VNKDIVTWNTMIAGYAQIRQMDDAVK 409
                                                ++   N ++  YA+   + +A K
Sbjct: 407 QPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARK 466

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
            FE M K  + VSWNA+I G++Q E++ +A  +F  M   G   D  +LA  +SACA++ 
Sbjct: 467 QFELM-KIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQ 525

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
            L+ G+Q H L +K G       G+SLI MY KCG +  A  +F      +V+S N+LIA
Sbjct: 526 ELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIA 585

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
           GY + G+  EAI LF+E+ M G+ P  VTF G+L  C    +++ G ++
Sbjct: 586 GYTM-GHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQI 633



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 184/767 (23%), Positives = 328/767 (42%), Gaps = 129/767 (16%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN----- 81
           K G V+ A K FS++ +K+   +NS++S Y  +G       LF  + Q  +  WN     
Sbjct: 88  KCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHG-------LFATVVQSFVCMWNHEVRP 140

Query: 82  -----------------------------------------SMIAGYLHNDKVKEARELF 100
                                                     +I  Y     +++AR +F
Sbjct: 141 NEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDARLVF 200

Query: 101 DKMFRPDLFSWALMITCYTRKGELEKARELFDLLP---NKEDTACWNAMVAGYAKIGNYN 157
           D     D  SW  +I  Y R G   +A ++FD +    +  D      +V  Y  +G   
Sbjct: 201 DGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNAYVALGRLA 260

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYV 213
           +A+KL   +P+ N+V+WN M+SG+ K G    A  FF  +++  +     S   +L    
Sbjct: 261 DARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIA 320

Query: 214 ELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNA 269
            L  L+       +  ++    NV     +++ YA+  +M  A+++F+ +  RN+V WNA
Sbjct: 321 SLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNA 380

Query: 270 MIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           M+  + Q G  +E    F  M    P+ +  ++T++      +  L+   +L   M    
Sbjct: 381 MLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNK 440

Query: 326 IAAQ----TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
            A+      A++  Y ++  + EA + F+ +  HD V WN +I GY Q    DEA  +FR
Sbjct: 441 FASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFR 500

Query: 382 QMVNK----DIVTWNTMIAGYAQIRQM--------------------------DDAVK-- 409
           +MV+     D V+  ++++  A ++++                          D  VK  
Sbjct: 501 RMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCG 560

Query: 410 -------IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
                  +F  M   RN VS NALI+G+       +A+ +F  +   G K    T A  L
Sbjct: 561 VVLAARDVFYSM-PSRNVVSVNALIAGYTMGHLE-EAIHLFQEIQMVGLKPTEVTFAGLL 618

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDL-FVGNSLITMYAKCGRIQNAELLFKDAD-PVD 520
             C     L LGRQIH   +K G+++    V  SL+ +Y    R  ++E LF +   P  
Sbjct: 619 DGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKG 678

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE 580
           ++ W +LI+GYA   +  +A++ ++ M  + + PD   F  VL AC+ +  +  G    E
Sbjct: 679 LVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQ---E 735

Query: 581 CMTEVYAIEPLVEHYAC--MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQ 638
             + ++     ++   C  +ID+ ++ G +  + ++ + M  + N   W +++    + +
Sbjct: 736 IHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRNNVISWNSMI--VGLAK 793

Query: 639 NIKLGRIAVEKLSELE-----PQKTSCYALLSNMHAEAGRWDEVEKV 680
           N      A+E   ++E     P + +   +LS   + AGR  E  KV
Sbjct: 794 N-GYAEEALEIFKQMEQQSIIPDEVTFLGVLSAC-SHAGRVSEGRKV 838



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 120/514 (23%), Positives = 229/514 (44%), Gaps = 60/514 (11%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM-- 72
           V+  +  +    K  +++ A ++F+ + ++N V +N+M+  +A+NG   +  + F  M  
Sbjct: 344 VYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKR 403

Query: 73  --PQRNLVSWNSMIA-----------GYLHNDKVKEARELFDKMFRPDLFSWALMITCYT 119
             PQ +  ++ S+ +           G LH   +K         F  +LF    ++  Y 
Sbjct: 404 HGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNK-------FASNLFVANALVDMYA 456

Query: 120 RKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWN 175
           + G L++AR+ F+L+    D   WNA++ GY +    +EA  +   M S  +    VS  
Sbjct: 457 KSGALKEARKQFELM-KIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLA 515

Query: 176 SMLSGYTKNGEMHLASK----FFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ 231
           S++S      E+    +      +   +    + + ++D YV+   + +A   F  +P +
Sbjct: 516 SIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSR 575

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ--------------R 277
           NVVS   +++GY   G + EA  LF ++ +  +       A  +                
Sbjct: 576 NVVSVNALIAGYTM-GHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIH 634

Query: 278 GQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY-KNIAAQTAMISGY 336
           GQ+ +    F+   E   VS   +   Y+   +  ++  L  ++ Y K +   TA+ISGY
Sbjct: 635 GQVMKWG--FLSSSEMVCVSLLCL---YMNSQRFVDSETLFSELQYPKGLVVWTALISGY 689

Query: 337 VQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ-CGRMDEAIN-------LFRQMVNKDI 388
            Q    ++A Q +  + + +++          + C  M    N       +F    N D 
Sbjct: 690 AQQNHHEKALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDE 749

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
           VT +++I  YA+   +  ++++F EM +R N +SWN++I G  +N +  +AL+IF  M Q
Sbjct: 750 VTCSSLIDMYAKCGDVKGSLQVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQ 809

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482
           +    D  T    LSAC+H   +  GR++  L +
Sbjct: 810 QSIIPDEVTFLGVLSACSHAGRVSEGRKVFDLMV 843



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 148/298 (49%), Gaps = 12/298 (4%)

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
           N ++  Y +   +D A K F  + ++++  +WN+++S +L +      ++ FV M     
Sbjct: 80  NVIVDLYVKCGNVDFAQKAFSRL-EKKDVFAWNSVLSMYLDHGLFATVVQSFVCMWNHEV 138

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL 511
           + +  T A  LSAC+ L  +  GRQ+H    K+G+    F    LI MYAKC  +++A L
Sbjct: 139 RPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDARL 198

Query: 512 LFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
           +F  A  +D +SW +LIAGY  +G   EA+K+F+ M   G APD +T + V++A   +G 
Sbjct: 199 VFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNAYVALGR 258

Query: 572 VDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA---FEMVKGMKIKPNAGIWG 628
           +    KLF  +       P V  +  MI   ++ G  +EA   F  +K   +K      G
Sbjct: 259 LADARKLFTQIP-----NPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLG 313

Query: 629 TLLGACRMHQNIKLGRIAVEKLSELEPQKTSCY--ALLSNMHAEAGRWDEVEKVRVSM 684
           ++L A      +  G + V   +  E    + Y  + L NM+A+  + D  ++V  S+
Sbjct: 314 SVLSAIASLSMLNYGSM-VHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSL 370



 Score = 60.5 bits (145), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 2/106 (1%)

Query: 468 LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSL 527
           L AL   + IH  ++K G      +GN ++ +Y KCG +  A+  F   +  DV +WNS+
Sbjct: 54  LQALSTAKVIHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSV 113

Query: 528 IAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVD 573
           ++ Y  +G     ++ F  M    V P+  TF  VLSACS  GL D
Sbjct: 114 LSMYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACS--GLQD 157



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 30/156 (19%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQK----NTVTYNSMISAYAKNGRVNDARKLFE 70
           V + N  I  L K+G  EEA++IF QM Q+    + VT+  ++SA +  GRV++ RK+F+
Sbjct: 781 VISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHAGRVSEGRKVFD 840

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
            M               ++N K+            P +     M+    R G L +A E 
Sbjct: 841 LM---------------VNNYKL-----------LPRVDHLGCMVDILGRWGFLNEAEEF 874

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
            + L  K D   W+ ++    K G+    K+  D +
Sbjct: 875 INKLGCKADPMLWSTLLGACRKHGDEVRGKRAADKL 910


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  343 bits (879), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 183/538 (34%), Positives = 307/538 (57%), Gaps = 18/538 (3%)

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR 245
            MHL        +  D    N +L+ Y +  ++  A K F ++ +++  SW  MLS YA+
Sbjct: 47  HMHL-----HLFKPNDTFIHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAK 101

Query: 246 NGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWT--TM 301
           +G + + R +FD MP R+ V++N +I+ +   G+   A  +F+ M +    P  +T  ++
Sbjct: 102 SGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSV 161

Query: 302 IDGYVRIAKLDEARRLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFDKIGTHDV 357
           ++   ++  L   +++  ++   N+        A+   Y +   +D+A ++FD++   +V
Sbjct: 162 LNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNV 221

Query: 358 VCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEE 413
           V WN+MI GY +  + ++ I+LF +M    +  D VT ++++  Y Q   +D+A K+F E
Sbjct: 222 VTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGE 281

Query: 414 MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQL 473
           + + ++ V W  +I G  QN    DAL +F  M  E  + D  T++  +S+CA LA+L  
Sbjct: 282 I-REKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYH 340

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           G+ +H  A   G  +DL V ++L+ MY KCG  ++A  +F      +V+SWNS+I GYA+
Sbjct: 341 GQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYAL 400

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVE 593
           NG   EA+ L+E M+ E + PD VTF+GVLSAC H GLV+ G + F  M++ + +EP  +
Sbjct: 401 NGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPD 460

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653
           HYACM++L  R+G +D+A +++  M  +PN+ IW T+L  C M  +IK G +A   L EL
Sbjct: 461 HYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLIEL 520

Query: 654 EPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD 711
            P     Y +LSNM+A  GRW +V  +R  M+    +K    SWIE+ N++H F++ D
Sbjct: 521 NPFNAVPYIMLSNMYAARGRWKDVASIRSLMKSKHVKKFSAYSWIEIDNEVHKFVADD 578



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 219/453 (48%), Gaps = 42/453 (9%)

Query: 11  KGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFE 70
           K +  F  N+ +    KSG +  A K+F +M+Q++  ++N+M+S YAK+G V D R +F+
Sbjct: 54  KPNDTFIHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFD 113

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
            MP R+ VS+N++I+G+  N +   A  +F +M +       L  T YT    L    +L
Sbjct: 114 NMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKE-----GLKPTEYTHVSVLNACTQL 168

Query: 131 FDLLPNKE------------DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSML 178
            DL   K+            +    NA+   YA+ G  ++A++L D M  +N+V+WN M+
Sbjct: 169 LDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMI 228

Query: 179 SGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
           SGY KN +       F  M+    + D V+ + +L  Y++   +D A K F +I E++ V
Sbjct: 229 SGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEV 288

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRN----------VVAWNAMIAAYVQRGQIEEAA 284
            W  M+ G A+NG+  +A  LF +M + N          VV+  A +A+ +  GQ+    
Sbjct: 289 CWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLAS-LYHGQVVHGK 347

Query: 285 RLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDE 344
              + + +   VS + ++D Y +     +A  +   M  +N+ +  +MI GY  N +  E
Sbjct: 348 AFLMGVNDDLLVS-SALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLE 406

Query: 345 ANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT-----WNTMI 395
           A  +++ +       D V +  ++      G ++E    F  M ++  +      +  M+
Sbjct: 407 ALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMV 466

Query: 396 AGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
             + +   MD AV +   M +  N++ W  ++S
Sbjct: 467 NLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLS 499



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 164/379 (43%), Gaps = 55/379 (14%)

Query: 8   IGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARK 67
           I N G  VF  N       + G +++A ++F +M  +N VT+N MIS Y KN +      
Sbjct: 183 ICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCID 242

Query: 68  LFEQMPQRNL----VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGE 123
           LF +M   NL    V+ +S++  Y+    + EAR++F ++   D   W +MI    + G+
Sbjct: 243 LFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGK 302

Query: 124 LEKARELFD--LLPN------------------------------------KEDTACWNA 145
            E A  LF   LL N                                     +D    +A
Sbjct: 303 EEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSA 362

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----D 201
           +V  Y K G   +A  +   M ++N+VSWNSM+ GY  NG+   A   +E M E     D
Sbjct: 363 LVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPD 422

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEARRLF 256
            V++  +L   V    ++   ++F  + +Q+ +      +  M++ + R+G M +A  L 
Sbjct: 423 SVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLI 482

Query: 257 DQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTTMIDGYVRIAKLD 312
             M    N + W  +++  V +G I   E AAR  IE+   N V +  + + Y    +  
Sbjct: 483 SSMSQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLIELNPFNAVPYIMLSNMYAARGRWK 542

Query: 313 EARRLLDQMPYKNIAAQTA 331
           +   +   M  K++   +A
Sbjct: 543 DVASIRSLMKSKHVKKFSA 561



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 103/248 (41%), Gaps = 48/248 (19%)

Query: 472 QLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSL---- 527
           Q  R   H+ +     ND F+ N L+ +YAK G I +A  LF +    D  SWN++    
Sbjct: 40  QAKRLKSHMHLHLFKPNDTFIHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLY 99

Query: 528 ---------------------------IAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
                                      I+G+A NG    A+ +F  M  EG+ P   T +
Sbjct: 100 AKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHV 159

Query: 561 GVLSACSHV------GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEM 614
            VL+AC+ +        + G + +      V+    L        DL +R G +D+A  +
Sbjct: 160 SVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALT-------DLYARCGEIDQARRL 212

Query: 615 VKGMKIKPNAGIWGTLL-GACRMHQNIKLGRIAVE-KLSELEPQKTSCYALLSNMHAEAG 672
              M I+ N   W  ++ G  +  Q  K   +  E ++S L+P + +  ++L   + +AG
Sbjct: 213 FDRMVIR-NVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLG-AYIQAG 270

Query: 673 RWDEVEKV 680
             DE  KV
Sbjct: 271 YIDEARKV 278


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  343 bits (879), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 209/650 (32%), Positives = 337/650 (51%), Gaps = 58/650 (8%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----E 199
           NA+++ + + G+  EA  +   M  +++ SWN ++ GY K G    A   +  M      
Sbjct: 133 NALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIR 192

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRL 255
            DV ++  +L     L DL    +    +     E +V     +++ Y + G +  AR +
Sbjct: 193 PDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLV 252

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE----RNPVSWTTMID-------- 303
           FD+MP R+ ++WNAMI+ Y +     E  RLF  M E     + ++ T++I         
Sbjct: 253 FDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDE 312

Query: 304 -------GYV--------------------RIAKLDEARRLLDQMPYKNIAAQTAMISGY 336
                  GYV                     +   DEA  +  +M +K++ + TAMISGY
Sbjct: 313 RLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGY 372

Query: 337 VQNKRMDEANQIFDKIGTHDVVCWNVMI----KGYAQCGRMDEAINLF----RQMVNKDI 388
            +N   ++A + +  +    VV   + I       A  G +D+ I L     R  +   +
Sbjct: 373 EKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYV 432

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
           +  N++I  Y++ R +D A+++F  +   +N +SW ++I G   N    +AL  F  M  
Sbjct: 433 IVANSLIDMYSKCRCIDKALEVFHRI-PNKNVISWTSIILGLRLNYRSFEALFFFQQMIL 491

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
              K +  TL   LSACA + AL  G++IH  A+++G   D F+ N+L+ MY +CGR++ 
Sbjct: 492 S-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEP 550

Query: 509 AELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
           A   F   +  DV SWN L+ GYA  G    A++LF +M+   V PD +TF  +L ACS 
Sbjct: 551 AWNQFNSCEK-DVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSR 609

Query: 569 VGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWG 628
            G+V  GL+ FE M   + I P ++HYA ++DLL RAGRL++A+E +K M I P+  IWG
Sbjct: 610 SGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWG 669

Query: 629 TLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688
            LL ACR++QN++LG +A + + E++ +    Y LL N++A++G+WDEV +VR  M  + 
Sbjct: 670 ALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENR 729

Query: 689 AQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNTPLAV 738
               PGCSW+EV  Q+H FL+GD    +  EI   L+    ++  T L++
Sbjct: 730 LTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSM 779



 Score =  145 bits (367), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 191/392 (48%), Gaps = 29/392 (7%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           N++I+ Y K G +  AR +F++MP+R+ +SWN+MI+GY  ND   E   LF  M      
Sbjct: 234 NALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVD 293

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKL 162
           PDL +   +I+     G+    RE+   +       + +  N+++  ++ +G ++EA+ +
Sbjct: 294 PDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMV 353

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL----MLDGYVELDDL 218
              M  K++VSW +M+SGY KNG    A + +  ME   VV   +    +L     L  L
Sbjct: 354 FSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLL 413

Query: 219 DSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
           D      +      + S+V    +++  Y++   + +A  +F ++P +NV++W ++I   
Sbjct: 414 DKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGL 473

Query: 275 VQRGQIEEAARLFIEMP---ERNPVSWTTMIDGYVRIAKLD-----EARRLLDQMPYKNI 326
               +  EA   F +M    + N V+  +++    RI  L       A  L   + +   
Sbjct: 474 RLNYRSFEALFFFQQMILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGF 533

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM--- 383
               A++  YV+  RM+ A   F+     DV  WN+++ GYAQ G+   A+ LF +M   
Sbjct: 534 LPN-ALLDMYVRCGRMEPAWNQFNSC-EKDVASWNILLTGYAQQGKGGLAVELFHKMIES 591

Query: 384 -VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            VN D +T+ +++   ++   + D ++ FE M
Sbjct: 592 DVNPDEITFTSLLCACSRSGMVTDGLEYFESM 623



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 103/399 (25%), Positives = 176/399 (44%), Gaps = 41/399 (10%)

Query: 19  NKKITQLGKS-GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           N  + Q+  S G  +EA  +FS+M  K+ V++ +MIS Y KNG    A + +  M    +
Sbjct: 334 NNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGV 393

Query: 78  VSWNSMIAGYLHN-------DKVKEARELFDKMFRPDLFSWAL----MITCYTRKGELEK 126
           V     IA  L         DK     E  D   R  L S+ +    +I  Y++   ++K
Sbjct: 394 VPDEITIASVLSACAGLGLLDKGIMLHEFAD---RTGLTSYVIVANSLIDMYSKCRCIDK 450

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP---SKNIVSWNSMLSGYTK 183
           A E+F  +PNK +   W +++ G        EA      M      N V+  S+LS   +
Sbjct: 451 ALEVFHRIPNK-NVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSVTLVSVLSACAR 509

Query: 184 NGEMHLASKFFEAMEERDVVSW-----NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
            G +    K   A   R  + +     N +LD YV    ++ AW  F    E++V SW  
Sbjct: 510 IGALS-CGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSC-EKDVASWNI 567

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPER- 293
           +L+GYA+ G+   A  LF +M   +V    + + +++ A  + G + +    F  M  + 
Sbjct: 568 LLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKF 627

Query: 294 ----NPVSWTTMIDGYVRIAKLDEARRLLDQMPY-KNIAAQTAMISG--YVQNKRMDE-- 344
               N   + +++D   R  +L++A   + +MP   + A   A+++     QN  + E  
Sbjct: 628 HIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELA 687

Query: 345 ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
           A  IF+ + T  V  + ++   YA  G+ DE   + + M
Sbjct: 688 AQHIFE-MDTKSVGYYILLCNLYADSGKWDEVARVRKIM 725



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 141/295 (47%), Gaps = 24/295 (8%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           SYV   N  I    K   +++A+++F ++  KN +++ S+I     N R  +A   F+QM
Sbjct: 430 SYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQM 489

Query: 73  P---QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL----FSWALMITCYTRKGELE 125
               + N V+  S+++       +   +E+     R  L    F    ++  Y R G +E
Sbjct: 490 ILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRME 549

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGY 181
            A   F+    ++D A WN ++ GYA+ G    A +L   M   ++    +++ S+L   
Sbjct: 550 PAWNQFN--SCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCAC 607

Query: 182 TKNGEMHLASKFFEAMEERDVVSWNL-----MLDGYVELDDLDSAWKFFQKIP-EQNVVS 235
           +++G +    ++FE+ME +  ++ NL     ++D       L+ A++F +K+P + +   
Sbjct: 608 SRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAI 667

Query: 236 WVTMLSG--YARNGRM--LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
           W  +L+     +N  +  L A+ +F +M  ++V  +  +   Y   G+ +E AR+
Sbjct: 668 WGALLNACRIYQNVELGELAAQHIF-EMDTKSVGYYILLCNLYADSGKWDEVARV 721



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 116/294 (39%), Gaps = 60/294 (20%)

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS 495
           HLD+++   +  +E       T    L  C    A   G ++H    K+     + +GN+
Sbjct: 81  HLDSMQELQVSVEE------ETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNA 134

Query: 496 LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555
           L++M+ + G +  A  +F      D+ SWN L+ GYA  G   EA+ L+  M+  G+ PD
Sbjct: 135 LLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPD 194

Query: 556 PVTFIGVLSACS-----------HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLS- 603
             TF  VL  C            H+ ++  G +     ++V  +  L+  Y    D+ S 
Sbjct: 195 VYTFPCVLRTCGGLPDLARGREVHLHVIRYGFE-----SDVDVVNALITMYVKCGDIFSA 249

Query: 604 -----RAGRLDEA---------------------FEMVKGMKIKPNAGIWGTLLGACRMH 637
                R  R D                       F M++   + P+     +++ AC   
Sbjct: 250 RLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEAL 309

Query: 638 QNIKLGR------IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685
            + +LGR      I    ++E+    +     L  MH+  G WDE E V   ME
Sbjct: 310 GDERLGREVHGYVIKTGFVAEVSVNNS-----LIQMHSSVGCWDEAEMVFSKME 358


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  343 bits (879), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 211/644 (32%), Positives = 341/644 (52%), Gaps = 60/644 (9%)

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV--V 203
           +V+ + + G+ +EA ++ + + SK  V +++ML G+ K  ++  A +FF  M   DV  V
Sbjct: 75  LVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPV 134

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTM----LSG----YARNGRMLEARRL 255
            +N      V  D+  +  +  ++I    V S  ++    ++G    YA+  ++ EAR++
Sbjct: 135 VYNFTYLLKVCGDE--AELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKV 192

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN-------------PVSW---- 298
           FD+MP R++V+WN ++A Y Q G    A  +   M E N              VS     
Sbjct: 193 FDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLI 252

Query: 299 ----------------------TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGY 336
                                 T ++D Y +   L+ AR+L D M  +N+ +  +MI  Y
Sbjct: 253 SVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAY 312

Query: 337 VQNKRMDEANQIFDKIGTHDVVCWNVMIKGY----AQCGRMDEAINLFRQMV----NKDI 388
           VQN+   EA  IF K+    V   +V + G     A  G ++    + +  V    ++++
Sbjct: 313 VQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNV 372

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
              N++I+ Y + +++D A  +F ++ + R  VSWNA+I GF QN   +DAL  F  M  
Sbjct: 373 SVVNSLISMYCKCKEVDTAASMFGKL-QSRTLVSWNAMILGFAQNGRPIDALNYFSQMRS 431

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
              K D  T    ++A A L+     + IH + ++S    ++FV  +L+ MYAKCG I  
Sbjct: 432 RTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMI 491

Query: 509 AELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
           A L+F       V +WN++I GY  +G    A++LFEEM    + P+ VTF+ V+SACSH
Sbjct: 492 ARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSH 551

Query: 569 VGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWG 628
            GLV+ GLK F  M E Y+IE  ++HY  M+DLL RAGRL+EA++ +  M +KP   ++G
Sbjct: 552 SGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYG 611

Query: 629 TLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688
            +LGAC++H+N+     A E+L EL P     + LL+N++  A  W++V +VRVSM   G
Sbjct: 612 AMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQG 671

Query: 689 AQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            +K PGCS +E+KN++H+F SG      + +I   L+ L   I+
Sbjct: 672 LRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIK 715



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 130/500 (26%), Positives = 226/500 (45%), Gaps = 69/500 (13%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F Q K ++   + G V+EA ++F  +  K  V Y++M+  +AK   ++ A + F +M   
Sbjct: 70  FFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYD 129

Query: 76  NL--VSWNSMIAGYLHNDKV-----KEARELFDKM-FRPDLFSWALMITCYTRKGELEKA 127
           ++  V +N      +  D+      KE   L  K  F  DLF+   +   Y +  ++ +A
Sbjct: 130 DVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEA 189

Query: 128 RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI---------------- 171
           R++FD +P + D   WN +VAGY++ G    A +++ +M  +N+                
Sbjct: 190 RKVFDRMPER-DLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSA 248

Query: 172 ---------VSWNSMLSG--------------YTKNGEMHLASKFFEAMEERDVVSWNLM 208
                    +   +M SG              Y K G +  A + F+ M ER+VVSWN M
Sbjct: 249 LRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSM 308

Query: 209 LDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFDQMPI--- 261
           +D YV+ ++   A   FQK+ ++ V    VS +  L   A  G  LE  R   ++ +   
Sbjct: 309 IDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGD-LERGRFIHKLSVELG 367

Query: 262 --RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLD 319
             RNV   N++I+ Y +  +++ AA +F ++  R  VSW  MI G+ +  +  +A     
Sbjct: 368 LDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFS 427

Query: 320 QMPYKNIAAQT----AMISGYVQNKRMDEANQIFDKIG----THDVVCWNVMIKGYAQCG 371
           QM  + +   T    ++I+   +      A  I   +       +V     ++  YA+CG
Sbjct: 428 QMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCG 487

Query: 372 RMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK---RRNTVSWNALIS 428
            +  A  +F  M  + + TWN MI GY        A+++FEEM K   + N V++ ++IS
Sbjct: 488 AIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVIS 547

Query: 429 GFLQNEFHLDALKIFVLMTQ 448
               +      LK F +M +
Sbjct: 548 ACSHSGLVEAGLKCFYMMKE 567



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 161/312 (51%), Gaps = 44/312 (14%)

Query: 307 RIAKLDEARRLLDQM----PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNV 362
           R + L E R++L  +     Y+    QT ++S + +   +DEA ++F+ I +   V ++ 
Sbjct: 46  RCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHT 105

Query: 363 MIKGYAQCGRMDEAINLFRQMVNKDI------VTWNTMIAG------------------- 397
           M+KG+A+   +D+A+  F +M   D+       T+   + G                   
Sbjct: 106 MLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSG 165

Query: 398 --------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
                         YA+ RQ+++A K+F+ M   R+ VSWN +++G+ QN     AL++ 
Sbjct: 166 FSLDLFAMTGLENMYAKCRQVNEARKVFDRM-PERDLVSWNTIVAGYSQNGMARMALEMV 224

Query: 444 VLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
             M +E  K    T+   L A + L  + +G++IH  A++SG+ + + +  +L+ MYAKC
Sbjct: 225 KSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKC 284

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
           G ++ A  LF      +V+SWNS+I  Y  N N  EA+ +F++M+ EGV P  V+ +G L
Sbjct: 285 GSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGAL 344

Query: 564 SACSHVGLVDGG 575
            AC+ +G ++ G
Sbjct: 345 HACADLGDLERG 356



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 163/373 (43%), Gaps = 45/373 (12%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----R 105
            +++  YAK G +  AR+LF+ M +RN+VSWNSMI  Y+ N+  KEA  +F KM     +
Sbjct: 275 TALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVK 334

Query: 106 PDLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNEAKKL 162
           P   S    +      G+LE+ R +  L   L    + +  N++++ Y K    + A  +
Sbjct: 335 PTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASM 394

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDL 218
              + S+ +VSWN+M+ G+ +NG    A  +F  M  R    D  ++  ++    EL   
Sbjct: 395 FGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSIT 454

Query: 219 DSA-W---KFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
             A W      +   ++NV     ++  YA+ G ++ AR +FD M  R+V  WNAMI  Y
Sbjct: 455 HHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGY 514

Query: 275 VQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT 330
              G  + A  LF EM     + N V++ ++I        ++   +    M         
Sbjct: 515 GTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMK-------- 566

Query: 331 AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
                Y     MD    + D +G               + GR++EA +   QM  K  V 
Sbjct: 567 ---ENYSIELSMDHYGAMVDLLG---------------RAGRLNEAWDFIMQMPVKPAVN 608

Query: 391 WNTMIAGYAQIRQ 403
               + G  QI +
Sbjct: 609 VYGAMLGACQIHK 621



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 123/269 (45%), Gaps = 17/269 (6%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
           +N    NS+IS Y K   V+ A  +F ++  R LVSWN+MI G+  N +  +A   F +M
Sbjct: 370 RNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQM 429

Query: 104 ----FRPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNY 156
                +PD F++  +IT          A+ +  ++      ++     A+V  YAK G  
Sbjct: 430 RSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAI 489

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGY 212
             A+ + D M  +++ +WN+M+ GY  +G    A + FE M++  +    V++  ++   
Sbjct: 490 MIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISAC 549

Query: 213 VELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPIRNVV-A 266
                +++  K F  + E   +      +  M+    R GR+ EA     QMP++  V  
Sbjct: 550 SHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNV 609

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPERNP 295
           + AM+ A      +  A +    + E NP
Sbjct: 610 YGAMLGACQIHKNVNFAEKAAERLFELNP 638



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 119/266 (44%), Gaps = 27/266 (10%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  I+   K   V+ A  +F ++  +  V++N+MI  +A+NGR  DA   F QM  R + 
Sbjct: 376 NSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVK 435

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKAREL 130
               ++ S+I           A+ +   + R     ++F    ++  Y + G +  AR +
Sbjct: 436 PDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLI 495

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGE 186
           FD++  +  T  WNAM+ GY   G    A +L + M    I    V++ S++S  + +G 
Sbjct: 496 FDMMSERHVTT-WNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGL 554

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDD-------LDSAWKFFQKIPEQNVVSWVTM 239
           +    K F  M+E    S  L +D Y  + D       L+ AW F  ++P +  V+    
Sbjct: 555 VEAGLKCFYMMKEN--YSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGA 612

Query: 240 LSGYA---RNGRMLE--ARRLFDQMP 260
           + G     +N    E  A RLF+  P
Sbjct: 613 MLGACQIHKNVNFAEKAAERLFELNP 638



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 9/156 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP- 73
           VF     +    K G +  A  IF  MS+++  T+N+MI  Y  +G    A +LFE+M  
Sbjct: 473 VFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQK 532

Query: 74  ---QRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELE 125
              + N V++ S+I+   H+  V+   + F  M         +  +  M+    R G L 
Sbjct: 533 GTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLN 592

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKK 161
           +A +    +P K     + AM+       N N A+K
Sbjct: 593 EAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEK 628



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 3/108 (2%)

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
           A  L  C+ L  L   RQI  L  K+G   + F    L++++ + G +  A  +F+  D 
Sbjct: 41  ALLLERCSSLKEL---RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDS 97

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
              + +++++ G+A   +  +A++ F  M  + V P    F  +L  C
Sbjct: 98  KLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVC 145


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  343 bits (879), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 200/608 (32%), Positives = 306/608 (50%), Gaps = 68/608 (11%)

Query: 177 MLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSW 236
           MLS    +   HLA KF +                Y    DL  A   F KIP+ ++ +W
Sbjct: 1   MLSKLPTSLPPHLALKFIKV---------------YSNSGDLQRARHLFDKIPQPDLPTW 45

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRN--------------------------------- 263
             ++S   ++GR LEA + ++    +N                                 
Sbjct: 46  TILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAI 105

Query: 264 -------VVAWNAMIAAYVQRGQIEEAARLFIE-MPERNPVSWTTMIDGYVRIAKLDEAR 315
                  V+  NA+I  Y  + +  E ARL  E MP R+ +SWT+M   YV    L EA 
Sbjct: 106 RFGFCSDVLLGNALIDMY-GKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLREAL 164

Query: 316 RLLDQMPYK----NIAAQTAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGY 367
               +M       N    ++++      K +    ++   +  +    +V   + ++  Y
Sbjct: 165 GAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMY 224

Query: 368 AQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWN 424
           A C  + +A  +F  M  +D V+WN +I  Y   ++ +  + +F  M   G   N  SWN
Sbjct: 225 ASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWN 284

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
           A+I G +QN     AL++   M   G K +  T+   L AC +L +L+ G+QIH    + 
Sbjct: 285 AVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRH 344

Query: 485 GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLF 544
            +  DL    +L+ MYAKCG ++ +  +F      D +SWN++I   +++GN  EA+ LF
Sbjct: 345 WFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLF 404

Query: 545 EEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSR 604
            EMV  GV P+ VTF GVLS CSH  LVD GL +F+ M+  +++EP  +H++CM+D+LSR
Sbjct: 405 REMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSR 464

Query: 605 AGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALL 664
           AGRL+EA+E +K M I+P AG WG LLG CR+++N++LGRIA  +L E+E      Y LL
Sbjct: 465 AGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEIESDNPGNYVLL 524

Query: 665 SNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTL 724
           SN+   A  W E  + R  M   G  K PGCSWI+V+N++HTF+ GD    ++ EI   L
Sbjct: 525 SNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQVRNRVHTFVVGDKSNDQSDEIYRFL 584

Query: 725 KTLAAQIR 732
             +  ++R
Sbjct: 585 DYMGEKMR 592



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 128/543 (23%), Positives = 240/543 (44%), Gaps = 44/543 (8%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR------ 105
            I  Y+ +G +  AR LF+++PQ +L +W  +I+    + +  EA + ++  FR      
Sbjct: 17  FIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYND-FRHKNCVE 75

Query: 106 PD-LFSWALMITCYTRKGELEKARELFDLLPNK--EDTACWNAMVAGYAKIGNYNEAKKL 162
           PD L   ++   C + +  +   R   D +      D    NA++  Y K      A+ +
Sbjct: 76  PDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLV 135

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSWNLMLDGYVELDDL 218
            + MP ++++SW SM S Y   G +  A   F  M    E  + V+ + +L    +L DL
Sbjct: 136 FEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDL 195

Query: 219 DSAWKFFQKIPEQ----NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
            S  +    +       NV     +++ YA    + +A+ +FD M  R+ V+WN +I AY
Sbjct: 196 KSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAY 255

Query: 275 VQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYK----NI 326
               + E+   +F  M       N  SW  +I G ++  + ++A  +L +M       N 
Sbjct: 256 FLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQ 315

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQ 382
              T+++      + +    QI   I  H    D+     ++  YA+CG ++ +  +F  
Sbjct: 316 ITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSM 375

Query: 383 MVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDA 439
           M  +D V+WNTMI   +     ++A+ +F EM   G R N+V++  ++SG   +    + 
Sbjct: 376 MTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEG 435

Query: 440 LKIFVLMTQEGK---KADHSTLACALSACAHLAALQLGRQ-IHHLAIK-SGYVNDLFVGN 494
           L IF  M+++      ADH +  C +   +    L+   + I  + I+ +       +G 
Sbjct: 436 LLIFDSMSRDHSVEPDADHHS--CMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGG 493

Query: 495 SLITMYAKCGRIQNAELLFKDAD-PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA 553
             +    + GRI    L   ++D P + +  ++++    +   A+E  KL  +    GV 
Sbjct: 494 CRVYKNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRD---RGVT 550

Query: 554 PDP 556
            +P
Sbjct: 551 KNP 553



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 170/379 (44%), Gaps = 33/379 (8%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----R 105
           N++I  Y K      AR +FE MP R+++SW SM + Y++   ++EA   F KM     R
Sbjct: 117 NALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGER 176

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKL 162
           P+  + + ++   T   +L+  RE+   +       +    +A+V  YA   +  +A+ +
Sbjct: 177 PNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLV 236

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDL 218
            D+M  ++ VSWN +++ Y  N E       F  M    V     SWN ++ G ++    
Sbjct: 237 FDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRT 296

Query: 219 DSAWKFFQKI------PEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNVVAWN 268
           + A +   ++      P Q  ++ V    T L    R G+ +    +F     +++    
Sbjct: 297 EKALEVLSRMQNSGFKPNQITITSVLPACTNLESL-RGGKQIHG-YIFRHWFFQDLTTTT 354

Query: 269 AMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA----RRLLDQMPYK 324
           A++  Y + G +E + R+F  M +R+ VSW TMI         +EA    R ++D     
Sbjct: 355 ALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRP 414

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIGTH-----DVVCWNVMIKGYAQCGRMDEAINL 379
           N    T ++SG   ++ +DE   IFD +        D    + M+   ++ GR++EA   
Sbjct: 415 NSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEF 474

Query: 380 FRQM-VNKDIVTWNTMIAG 397
            ++M +      W  ++ G
Sbjct: 475 IKKMPIEPTAGAWGALLGG 493



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 143/312 (45%), Gaps = 23/312 (7%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           KSGR      + + M   N    +++++ YA    +  A+ +F+ M +R+ VSWN +I  
Sbjct: 196 KSGREVHGFVVRNGMG-GNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITA 254

Query: 87  YLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKARELFDLLPN---KED 139
           Y  N + ++   +F +M       +  SW  +I    + G  EKA E+   + N   K +
Sbjct: 255 YFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPN 314

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPS----KNIVSWNSMLSGYTKNGEMHLASKFFE 195
                +++     + +    K++   +      +++ +  +++  Y K G++ L+ + F 
Sbjct: 315 QITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFS 374

Query: 196 AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARNGRMLE 251
            M +RD VSWN M+       + + A   F+++ +     N V++  +LSG + +  + E
Sbjct: 375 MMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDE 434

Query: 252 ARRLFDQMPIRNVVAWNA-----MIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMIDGY 305
              +FD M   + V  +A     M+    + G++EEA     +MP E    +W  ++ G 
Sbjct: 435 GLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGG- 493

Query: 306 VRIAKLDEARRL 317
            R+ K  E  R+
Sbjct: 494 CRVYKNVELGRI 505



 Score = 56.2 bits (134), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 85/175 (48%), Gaps = 19/175 (10%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           IF     ++  T  +++  YAK G +  +R++F  M +R+ VSWN+MI     +   +EA
Sbjct: 341 IFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEA 400

Query: 97  ----RELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL-------PNKEDTACWNA 145
               RE+ D   RP+  ++  +++  +    +++   +FD +       P+ +  +C   
Sbjct: 401 LLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSC--- 457

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIV-SWNSMLSG--YTKNGEMH--LASKFFE 195
           MV   ++ G   EA + +  MP +    +W ++L G    KN E+    A++ FE
Sbjct: 458 MVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFE 512


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 209/650 (32%), Positives = 337/650 (51%), Gaps = 58/650 (8%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----E 199
           NA+++ + + G+  EA  +   M  +++ SWN ++ GY K G    A   +  M      
Sbjct: 133 NALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIR 192

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRL 255
            DV ++  +L     L DL    +    +     E +V     +++ Y + G +  AR +
Sbjct: 193 PDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLV 252

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE----RNPVSWTTMID-------- 303
           FD+MP R+ ++WNAMI+ Y +     E  RLF  M E     + ++ T++I         
Sbjct: 253 FDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDE 312

Query: 304 -------GYV--------------------RIAKLDEARRLLDQMPYKNIAAQTAMISGY 336
                  GYV                     +   DEA  +  +M +K++ + TAMISGY
Sbjct: 313 RLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGY 372

Query: 337 VQNKRMDEANQIFDKIGTHDVVCWNVMI----KGYAQCGRMDEAINLF----RQMVNKDI 388
            +N   ++A + +  +    VV   + I       A  G +D+ I L     R  +   +
Sbjct: 373 EKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYV 432

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
           +  N++I  Y++ R +D A+++F  +   +N +SW ++I G   N    +AL  F  M  
Sbjct: 433 IVANSLIDMYSKCRCIDKALEVFHRI-PNKNVISWTSIILGLRLNYRSFEALFFFQQMIL 491

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
              K +  TL   LSACA + AL  G++IH  A+++G   D F+ N+L+ MY +CGR++ 
Sbjct: 492 -SLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEP 550

Query: 509 AELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
           A   F   +  DV SWN L+ GYA  G    A++LF +M+   V PD +TF  +L ACS 
Sbjct: 551 AWNQFNSCEK-DVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSR 609

Query: 569 VGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWG 628
            G+V  GL+ FE M   + I P ++HYA ++DLL RAGRL++A+E +K M I P+  IWG
Sbjct: 610 SGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWG 669

Query: 629 TLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688
            LL ACR++QN++LG +A + + E++ +    Y LL N++A++G+WDEV +VR  M  + 
Sbjct: 670 ALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENR 729

Query: 689 AQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNTPLAV 738
               PGCSW+EV  Q+H FL+GD    +  EI   L+    ++  T L++
Sbjct: 730 LTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSM 779



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 191/392 (48%), Gaps = 29/392 (7%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           N++I+ Y K G +  AR +F++MP+R+ +SWN+MI+GY  ND   E   LF  M      
Sbjct: 234 NALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVD 293

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKL 162
           PDL +   +I+     G+    RE+   +       + +  N+++  ++ +G ++EA+ +
Sbjct: 294 PDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMV 353

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL----MLDGYVELDDL 218
              M  K++VSW +M+SGY KNG    A + +  ME   VV   +    +L     L  L
Sbjct: 354 FSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLL 413

Query: 219 DSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
           D      +      + S+V    +++  Y++   + +A  +F ++P +NV++W ++I   
Sbjct: 414 DKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGL 473

Query: 275 VQRGQIEEAARLFIEMP---ERNPVSWTTMIDGYVRIAKLD-----EARRLLDQMPYKNI 326
               +  EA   F +M    + N V+  +++    RI  L       A  L   + +   
Sbjct: 474 RLNYRSFEALFFFQQMILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGF 533

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM--- 383
               A++  YV+  RM+ A   F+     DV  WN+++ GYAQ G+   A+ LF +M   
Sbjct: 534 LPN-ALLDMYVRCGRMEPAWNQFNSC-EKDVASWNILLTGYAQQGKGGLAVELFHKMIES 591

Query: 384 -VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            VN D +T+ +++   ++   + D ++ FE M
Sbjct: 592 DVNPDEITFTSLLCACSRSGMVTDGLEYFESM 623



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 103/399 (25%), Positives = 176/399 (44%), Gaps = 41/399 (10%)

Query: 19  NKKITQLGKS-GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           N  + Q+  S G  +EA  +FS+M  K+ V++ +MIS Y KNG    A + +  M    +
Sbjct: 334 NNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGV 393

Query: 78  VSWNSMIAGYLHN-------DKVKEARELFDKMFRPDLFSWAL----MITCYTRKGELEK 126
           V     IA  L         DK     E  D   R  L S+ +    +I  Y++   ++K
Sbjct: 394 VPDEITIASVLSACAGLGLLDKGIMLHEFAD---RTGLTSYVIVANSLIDMYSKCRCIDK 450

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP---SKNIVSWNSMLSGYTK 183
           A E+F  +PNK +   W +++ G        EA      M      N V+  S+LS   +
Sbjct: 451 ALEVFHRIPNK-NVISWTSIILGLRLNYRSFEALFFFQQMILSLKPNSVTLVSVLSACAR 509

Query: 184 NGEMHLASKFFEAMEERDVVSW-----NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
            G +    K   A   R  + +     N +LD YV    ++ AW  F    E++V SW  
Sbjct: 510 IGALS-CGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSC-EKDVASWNI 567

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPER- 293
           +L+GYA+ G+   A  LF +M   +V    + + +++ A  + G + +    F  M  + 
Sbjct: 568 LLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKF 627

Query: 294 ----NPVSWTTMIDGYVRIAKLDEARRLLDQMPY-KNIAAQTAMISG--YVQNKRMDE-- 344
               N   + +++D   R  +L++A   + +MP   + A   A+++     QN  + E  
Sbjct: 628 HIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELA 687

Query: 345 ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
           A  IF+ + T  V  + ++   YA  G+ DE   + + M
Sbjct: 688 AQHIFE-MDTKSVGYYILLCNLYADSGKWDEVARVRKIM 725



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 141/295 (47%), Gaps = 24/295 (8%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           SYV   N  I    K   +++A+++F ++  KN +++ S+I     N R  +A   F+QM
Sbjct: 430 SYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQM 489

Query: 73  P---QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL----FSWALMITCYTRKGELE 125
               + N V+  S+++       +   +E+     R  L    F    ++  Y R G +E
Sbjct: 490 ILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRME 549

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGY 181
            A   F+    ++D A WN ++ GYA+ G    A +L   M   ++    +++ S+L   
Sbjct: 550 PAWNQFN--SCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCAC 607

Query: 182 TKNGEMHLASKFFEAMEERDVVSWNL-----MLDGYVELDDLDSAWKFFQKIP-EQNVVS 235
           +++G +    ++FE+ME +  ++ NL     ++D       L+ A++F +K+P + +   
Sbjct: 608 SRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAI 667

Query: 236 WVTMLSG--YARNGRM--LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
           W  +L+     +N  +  L A+ +F +M  ++V  +  +   Y   G+ +E AR+
Sbjct: 668 WGALLNACRIYQNVELGELAAQHIF-EMDTKSVGYYILLCNLYADSGKWDEVARV 721



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 116/294 (39%), Gaps = 60/294 (20%)

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS 495
           HLD+++   +  +E       T    L  C    A   G ++H    K+     + +GN+
Sbjct: 81  HLDSMQELQVSVEE------ETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNA 134

Query: 496 LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555
           L++M+ + G +  A  +F      D+ SWN L+ GYA  G   EA+ L+  M+  G+ PD
Sbjct: 135 LLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPD 194

Query: 556 PVTFIGVLSACS-----------HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLS- 603
             TF  VL  C            H+ ++  G +     ++V  +  L+  Y    D+ S 
Sbjct: 195 VYTFPCVLRTCGGLPDLARGREVHLHVIRYGFE-----SDVDVVNALITMYVKCGDIFSA 249

Query: 604 -----RAGRLDEA---------------------FEMVKGMKIKPNAGIWGTLLGACRMH 637
                R  R D                       F M++   + P+     +++ AC   
Sbjct: 250 RLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEAL 309

Query: 638 QNIKLGR------IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685
            + +LGR      I    ++E+    +     L  MH+  G WDE E V   ME
Sbjct: 310 GDERLGREVHGYVIKTGFVAEVSVNNS-----LIQMHSSVGCWDEAEMVFSKME 358


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 223/783 (28%), Positives = 383/783 (48%), Gaps = 128/783 (16%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYN---SMISAYAKNGRVNDARKLFEQMPQR--N 76
           IT L +   +  A K+  Q S    + ++   ++I  Y  +     A  L E++P    +
Sbjct: 165 ITALKECNSLAHA-KLLHQQSIMQGLLFHLATNLIGTYIASNSTAYAILLLERLPPSPSS 223

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFD 132
           +  WN +I   LH    ++   L+ +M    + PD +++  +                  
Sbjct: 224 VFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFK---------------- 267

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
                   AC N          +   ++       + N+   N+++S Y K G +  A  
Sbjct: 268 --------ACANLSSLSLGASLHATVSRSGF----ASNVFVCNAVVSMYGKCGALRHAHN 315

Query: 193 FFEAMEER---DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ-----NVVSWVTMLSGYA 244
            F+ +  R   D+VSWN ++  Y+   D ++A   F K+  +     +V+S V +L   A
Sbjct: 316 MFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACA 375

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDG 304
                L  R++                   ++ G +++   +F+            ++D 
Sbjct: 376 SLAASLRGRQVH---------------GFSIRSGLVDD---VFVG---------NAVVDM 408

Query: 305 YVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH----DVVCW 360
           Y +  K++EA ++  +M +K++ +  AM++GY Q  R++ A  +F+++       DVV W
Sbjct: 409 YAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTW 468

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVN----------------------------------- 385
             +I GYAQ G+  EA+++FRQM +                                   
Sbjct: 469 TAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIK 528

Query: 386 ------------KDIVTWNTMIAGYAQIRQMDDAVKIFEEMG-KRRNTVSWNALISGFLQ 432
                        D+   N +I  YA+ +  + A K+F+ +  K R+ V+W  +I G+ Q
Sbjct: 529 FILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQ 588

Query: 433 NEFHLDALKIFVLMTQEGK--KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND- 489
           +    +AL++F  M +  K  K +  TL+CAL ACA LAAL+ GRQ+H   +++ Y +  
Sbjct: 589 HGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVM 648

Query: 490 LFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549
           LFV N LI MY+K G +  A+++F +    + +SW SL+ GY ++G   +A+++F+EM  
Sbjct: 649 LFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRK 708

Query: 550 EGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLD 609
             + PD +TF+ VL ACSH G+VD G+  F  M++ + ++P  EHYACM+DL  RAGRL 
Sbjct: 709 VPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLG 768

Query: 610 EAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHA 669
           EA +++  M ++P   +W  LL ACR+H N++LG  A  +L ELE      Y LLSN++A
Sbjct: 769 EAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYA 828

Query: 670 EAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAA 729
            A RW +V ++R +M+ +G +K+PGCSWI+ +  + TF  GD    ++ +I  TL  L  
Sbjct: 829 NARRWKDVARIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDRSHPQSQQIYETLADLIQ 888

Query: 730 QIR 732
           +I+
Sbjct: 889 RIK 891



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 177/380 (46%), Gaps = 72/380 (18%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  N  +    K G++EEA K+F +M  K+ V++N+M++ Y++ GR+  A  LFE+M +
Sbjct: 399 VFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTE 458

Query: 75  RNL----VSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEK 126
            N+    V+W ++I GY    +  EA ++F +M     RP++ +   +++     G L  
Sbjct: 459 ENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLH 518

Query: 127 ARE-----------LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK--NIVS 173
            +E           L    P  +D    N ++  YAK  +   A+K+ D++  K  ++V+
Sbjct: 519 GKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVT 578

Query: 174 WNSMLSGYTKNGEMHLASKFFEAMEERD-------------------------------- 201
           W  M+ GY ++G+ + A + F  M + D                                
Sbjct: 579 WTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAY 638

Query: 202 ----------VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLE 251
                     +   N ++D Y +  D+D+A   F  +P++N VSW ++++GY  +GR  +
Sbjct: 639 VLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGED 698

Query: 252 ARRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-----ERNPVSWTTMI 302
           A R+FD+M     + + + +  ++ A    G ++     F  M      +  P  +  M+
Sbjct: 699 ALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMV 758

Query: 303 DGYVRIAKLDEARRLLDQMP 322
           D + R  +L EA +L+++MP
Sbjct: 759 DLWGRAGRLGEAMKLINEMP 778



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 123/529 (23%), Positives = 213/529 (40%), Gaps = 138/529 (26%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQK---NTVTYNSMISAYAKNGRVNDARKL 68
            S VF  N  ++  GK G +  A  +F  +  +   + V++NS++SAY      N A  L
Sbjct: 291 ASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALAL 350

Query: 69  FEQMPQRNLVS----------------------------------------WNSMIAGYL 88
           F +M  R+L+S                                         N+++  Y 
Sbjct: 351 FHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYA 410

Query: 89  HNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNA 145
              K++EA ++F +M   D+ SW  M+T Y++ G LE A  LF+ +  +    D   W A
Sbjct: 411 KCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTA 470

Query: 146 MVAGYAKIGNYNEA----KKLLDAMPSKNIVSWNSMLSGYTKNG------EMHL-ASKFF 194
           ++ GYA+ G   EA    +++ D     N+V+  S+LS     G      E H  A KF 
Sbjct: 471 VITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFI 530

Query: 195 EAMEERDVVSWNL-----MLDGYVELDDLDSAWKFFQKIP--EQNVVSWVTMLSGYARNG 247
             ++  D  + +L     ++D Y +    + A K F  +   +++VV+W  M+ GYA++G
Sbjct: 531 LNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHG 590

Query: 248 RMLEARRLFDQM------------------------------------PIRN------VV 265
               A +LF  M                                     +RN      + 
Sbjct: 591 DANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLF 650

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
             N +I  Y + G ++ A  +F  MP+RN VSWT+++ GY    + ++A R+ D+M    
Sbjct: 651 VANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVP 710

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-- 383
           +                             D + + V++   +  G +D  IN F +M  
Sbjct: 711 LVP---------------------------DGITFLVVLYACSHSGMVDHGINFFNRMSK 743

Query: 384 ---VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
              V+     +  M+  + +  ++ +A+K+  EM      V W AL+S 
Sbjct: 744 DFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSA 792



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 133/270 (49%), Gaps = 8/270 (2%)

Query: 359 CWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTW--NTMIAGYAQIRQMDDAVKIFEEMGK 416
           C  + I    +C  +  A  L +Q + + ++      +I  Y        A+ + E +  
Sbjct: 160 CATIPITALKECNSLAHAKLLHQQSIMQGLLFHLATNLIGTYIASNSTAYAILLLERLPP 219

Query: 417 RRNTVSW-NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
             ++V W N LI   L      D   ++  M   G   DH T      ACA+L++L LG 
Sbjct: 220 SPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGA 279

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD---ADPVDVISWNSLIAGYA 532
            +H    +SG+ +++FV N++++MY KCG +++A  +F D       D++SWNS+++ Y 
Sbjct: 280 SLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYM 339

Query: 533 INGNATEAIKLFEEMVMEGV-APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL 591
              +A  A+ LF +M    + +PD ++ + +L AC+ +     G ++         ++ +
Sbjct: 340 WASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDV 399

Query: 592 VEHYACMIDLLSRAGRLDEAFEMVKGMKIK 621
               A ++D+ ++ G+++EA ++ + MK K
Sbjct: 400 FVGNA-VVDMYAKCGKMEEANKVFQRMKFK 428


>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
          Length = 615

 Score =  342 bits (878), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 175/461 (37%), Positives = 276/461 (59%), Gaps = 11/461 (2%)

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY--KN 325
           N +I  Y++ G +  A ++F  M +R+ VS+ +MIDGYV+   ++ AR L D MP   KN
Sbjct: 162 NCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVKCGLIESARELFDLMPSEKKN 221

Query: 326 IAAQTAMISGYVQNKR-MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
           + +  +MI+GY Q    +D A+ +FD++   D++ WN +I GY + GR+++A +LF +M 
Sbjct: 222 LISWNSMINGYAQRADGVDIASNLFDEMPEKDLISWNSLIDGYVKHGRIEDAKDLFDKMP 281

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
            +D+VTW TM+ GYA++  +  A  +F++M  +R+ V++N++++G++QN +H++A+ IF 
Sbjct: 282 RRDVVTWATMVDGYAKLGFVHQAKSLFDQM-PQRDVVAYNSMMAGYVQNRYHMEAIDIFN 340

Query: 445 LMTQEGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
            M +E     D +TL   LSA A L  L     +H   ++  ++    +G +LI MY+KC
Sbjct: 341 DMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYTVEKKFLLGGKLGVALIDMYSKC 400

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
           G IQ A  +F+  +   +  WN++I G AI+G    A  +  ++    + PD +TF+GVL
Sbjct: 401 GSIQQAMGVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVL 460

Query: 564 SACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPN 623
           +ACSH GLV  GL  FE M   + IEP ++HY CM+D+LSR+GR++ A  +++ M I+PN
Sbjct: 461 NACSHSGLVKEGLLCFELMKRKHKIEPRLQHYGCMVDILSRSGRIELAKNLIEEMPIEPN 520

Query: 624 AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVS 683
             IW T L AC  H+  + G +  + L        S Y LLSNM+A  G W EV +VR  
Sbjct: 521 DVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYASLGMWKEVRRVRTM 580

Query: 684 MEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTL 724
           M+    QK PGCSWIE+   +H F         + E+ NTL
Sbjct: 581 MKERKIQKIPGCSWIELDGSVHEFF------VDSMELSNTL 615



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 129/432 (29%), Positives = 219/432 (50%), Gaps = 66/432 (15%)

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           DLF    +I  Y + G L  AR++FD + ++ D+  +N+M+ GY K G    A++L D M
Sbjct: 157 DLFLQNCLIGLYLKCGCLGFARQVFDRM-SQRDSVSYNSMIDGYVKCGLIESARELFDLM 215

Query: 167 PS--KNIVSWNSMLSGYTKNGE-MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWK 223
           PS  KN++SWNSM++GY +  + + +AS  F+ M E+D++SWN ++DGYV+   ++ A  
Sbjct: 216 PSEKKNLISWNSMINGYAQRADGVDIASNLFDEMPEKDLISWNSLIDGYVKHGRIEDAKD 275

Query: 224 FFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEA 283
            F K+P ++VV+W TM+ GYA+ G + +A+ LFDQMP R+VVA+N+M+A YVQ     EA
Sbjct: 276 LFDKMPRRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQRDVVAYNSMMAGYVQNRYHMEA 335

Query: 284 ARLFIEMPERNPVS--WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKR 341
             +F +M + + +S   TT++     IA+L    + +D   Y     +  ++ G      
Sbjct: 336 IDIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYT--VEKKFLLGG------ 387

Query: 342 MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQI 401
                    K+G         +I  Y++CG + +A+ +F ++ NK I  WN MI G A  
Sbjct: 388 ---------KLGV-------ALIDMYSKCGSIQQAMGVFERIENKSIDHWNAMIGGLA-- 429

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
                                    I G  ++ F      + + + +   K D  T    
Sbjct: 430 -------------------------IHGLGESAF-----DMLLQIERRSIKPDDITFVGV 459

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVND-LFVGNSLITMYAKCGRIQNAELLFKDA--DP 518
           L+AC+H   ++ G     L  +   +   L     ++ + ++ GRI+ A+ L ++   +P
Sbjct: 460 LNACSHSGLVKEGLLCFELMKRKHKIEPRLQHYGCMVDILSRSGRIELAKNLIEEMPIEP 519

Query: 519 VDVISWNSLIAG 530
            DVI W + +  
Sbjct: 520 NDVI-WRTFLTA 530



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/294 (35%), Positives = 162/294 (55%), Gaps = 13/294 (4%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F QN  I    K G +  A ++F +MSQ+++V+YNSMI  Y K G +  AR+LF+ M
Sbjct: 156 SDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVKCGLIESARELFDLM 215

Query: 73  P--QRNLVSWNSMIAGYLHN-DKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARE 129
           P  ++NL+SWNSMI GY    D V  A  LFD+M   DL SW  +I  Y + G +E A++
Sbjct: 216 PSEKKNLISWNSMINGYAQRADGVDIASNLFDEMPEKDLISWNSLIDGYVKHGRIEDAKD 275

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           LFD +P + D   W  MV GYAK+G  ++AK L D MP +++V++NSM++GY +N     
Sbjct: 276 LFDKMP-RRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQRDVVAYNSMMAGYVQNRYHME 334

Query: 190 ASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV----SWVTML 240
           A   F  ME+      D  +  ++L    +L  L  A        E+  +      V ++
Sbjct: 335 AIDIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYTVEKKFLLGGKLGVALI 394

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
             Y++ G + +A  +F+++  +++  WNAMI      G  E A  + +++  R+
Sbjct: 395 DMYSKCGSIQQAMGVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRS 448



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/378 (28%), Positives = 190/378 (50%), Gaps = 23/378 (6%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF--RPD 107
           N +I  Y K G +  AR++F++M QR+ VS+NSMI GY+    ++ ARELFD M   + +
Sbjct: 162 NCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVKCGLIESARELFDLMPSEKKN 221

Query: 108 LFSWALMITCYTRKGE-LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           L SW  MI  Y ++ + ++ A  LFD +P K D   WN+++ GY K G   +AK L D M
Sbjct: 222 LISWNSMINGYAQRADGVDIASNLFDEMPEK-DLISWNSLIDGYVKHGRIEDAKDLFDKM 280

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
           P +++V+W +M+ GY K G +H A   F+ M +RDVV++N M+ GYV+      A   F 
Sbjct: 281 PRRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQRDVVAYNSMMAGYVQNRYHMEAIDIFN 340

Query: 227 KIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN----AMIAAYVQR 277
            + +++ +S      V +LS  A+ GR+ +A  +      +  +       A+I  Y + 
Sbjct: 341 DMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYTVEKKFLLGGKLGVALIDMYSKC 400

Query: 278 GQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYV 337
           G I++A  +F  +  ++   W  MI G       + A  +L Q+  ++I        G +
Sbjct: 401 GSIQQAMGVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVL 460

Query: 338 ----QNKRMDEANQIFDKIGTHDVV-----CWNVMIKGYAQCGRMDEAINLFRQM-VNKD 387
                +  + E    F+ +     +      +  M+   ++ GR++ A NL  +M +  +
Sbjct: 461 NACSHSGLVKEGLLCFELMKRKHKIEPRLQHYGCMVDILSRSGRIELAKNLIEEMPIEPN 520

Query: 388 IVTWNTMIAGYAQIRQMD 405
            V W T +   +  ++ +
Sbjct: 521 DVIWRTFLTACSHHKEFE 538



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 177/330 (53%), Gaps = 32/330 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQM--SQKNTVTYNSMISAYAKNGR-VNDARKLFEQMPQR 75
           N  I    K G +E A ++F  M   +KN +++NSMI+ YA+    V+ A  LF++MP++
Sbjct: 193 NSMIDGYVKCGLIESARELFDLMPSEKKNLISWNSMINGYAQRADGVDIASNLFDEMPEK 252

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           +L+SWNS+I GY+ + ++++A++LFDKM R D+ +WA M+  Y + G + +A+ LFD +P
Sbjct: 253 DLISWNSLIDGYVKHGRIEDAKDLFDKMPRRDVVTWATMVDGYAKLGFVHQAKSLFDQMP 312

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN-----------IVSWNSMLSGYTKN 184
            + D   +N+M+AGY +   + EA  + + M  ++           ++S  + L   +K 
Sbjct: 313 QR-DVVAYNSMMAGYVQNRYHMEAIDIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKA 371

Query: 185 GEMHLASKFFEAMEERDVVSWNL---MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
            +MHL +     +E++ ++   L   ++D Y +   +  A   F++I  +++  W  M+ 
Sbjct: 372 MDMHLYT-----VEKKFLLGGKLGVALIDMYSKCGSIQQAMGVFERIENKSIDHWNAMIG 426

Query: 242 GYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
           G A +G    A  +  Q+  R++    + +  ++ A    G ++E    F  M  ++ + 
Sbjct: 427 GLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMKRKHKIE 486

Query: 298 -----WTTMIDGYVRIAKLDEARRLLDQMP 322
                +  M+D   R  +++ A+ L+++MP
Sbjct: 487 PRLQHYGCMVDILSRSGRIELAKNLIEEMP 516



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 103/218 (47%), Gaps = 9/218 (4%)

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
           G   +   WNA+I           AL +F LM + G   D  +L+  L AC+ L  ++ G
Sbjct: 83  GNVEDPFLWNAVIKSHSHGVEPRKALLLFFLMLKNGVSVDKFSLSLVLKACSRLGFVKEG 142

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
            Q H    K+G  +DLF+ N LI +Y KCG +  A  +F      D +S+NS+I GY   
Sbjct: 143 MQXHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVKC 202

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH-VGLVDGGLKLFECMTEVYAIEPLVE 593
           G    A +LF+ M  E    + +++  +++  +     VD    LF+ M E   I     
Sbjct: 203 GLIESARELFDLMPSE--KKNLISWNSMINGYAQRADGVDIASNLFDEMPEKDLIS---- 256

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
            +  +ID   + GR+++A ++   M  + +   W T++
Sbjct: 257 -WNSLIDGYVKHGRIEDAKDLFDKMP-RRDVVTWATMV 292


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 205/602 (34%), Positives = 330/602 (54%), Gaps = 39/602 (6%)

Query: 170 NIVSWNSMLSGYTKNGEMHLASKFFEAMEER---DVVSWNLMLDGYVELDDLDSAWKFFQ 226
           N+   NS+++ Y + G +  A + F+ + ER   D+VSWN +L  YV+     +A +   
Sbjct: 161 NVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAF 220

Query: 227 KIPEQ-------NVVSWVTMLSGYA-----RNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
           ++          + ++ V +L   A     ++G+ +    + + + + +V   NA+++ Y
Sbjct: 221 RMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGL-VDDVFVGNALVSMY 279

Query: 275 VQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----T 330
            +  ++ EA ++F  + +++ VSW  M+ GY +I   D A  L   M  ++I       +
Sbjct: 280 AKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWS 339

Query: 331 AMISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRM-----------DE 375
           A+I+GY Q     EA  +F ++  +    +VV    ++ G A  G +             
Sbjct: 340 AVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKN 399

Query: 376 AINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM-GKRRNTVSWNALISGFLQNE 434
            +NL       D++  N +I  YA+ +    A  IF+ + GK +N V+W  +I G+ Q+ 
Sbjct: 400 ILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHG 459

Query: 435 FHLDALKIF--VLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND-LF 491
              DALK+F  +   +   K +  TL+CAL ACA L  L+LGRQ+H  A+++   ++ L+
Sbjct: 460 EANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLY 519

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
           VGN LI MY+K G I  A  +F +    +V+SW SL+ GY ++G   EA+ LF++M   G
Sbjct: 520 VGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLG 579

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
            A D +TF+ VL ACSH G+VD G+  F  M + + I P  EHYACM+DLL RAGRL+EA
Sbjct: 580 FAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEA 639

Query: 612 FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEA 671
            E++K M ++P A +W  LL A R+H NI+LG  A  KL+EL  +    Y LLSN++A A
Sbjct: 640 MELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANA 699

Query: 672 GRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
            RW +V ++R  M+ +G +K+PGCSWI+ K    TF  GD     + +I N L  L  +I
Sbjct: 700 RRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLIKRI 759

Query: 732 RN 733
           ++
Sbjct: 760 KD 761



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 124/541 (22%), Positives = 243/541 (44%), Gaps = 83/541 (15%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQR---NLVSWNSMIAGYLHNDKVKEARELFD 101
           N    NS+++ Y + G ++DA ++F+++ +R   ++VSWNS++A Y+   + + A  +  
Sbjct: 161 NVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAF 220

Query: 102 KM-------FRPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYA 151
           +M        RPD  +   ++        L+  +++          +D    NA+V+ YA
Sbjct: 221 RMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYA 280

Query: 152 KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNL 207
           K    NEA K+ + +  K++VSWN+M++GY++ G    A   F+ M+E     DV++W+ 
Sbjct: 281 KCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSA 340

Query: 208 MLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRN 263
           ++ GY +      A   F+++     E NVV+  ++LSG A  G +L  ++    + I+N
Sbjct: 341 VIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYV-IKN 399

Query: 264 V------------VAWNAMIAAYVQRGQIEEAARLF--IEMPERNPVSWTTMIDGYVRIA 309
           +            +  N +I  Y +      A  +F  IE  ++N V+WT MI GY +  
Sbjct: 400 ILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHG 459

Query: 310 KLDEARRLLDQMPYKNIAAQTAMIS-----------GYVQNKRMDEANQIFDKIGTHDVV 358
           + ++A +L  Q+  +  + +    +           G ++  R   A  + ++  +  + 
Sbjct: 460 EANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLY 519

Query: 359 CWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRR 418
             N +I  Y++ G +D A  +F  M  +++V+W +++ GY    + ++A+ +F++M K  
Sbjct: 520 VGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKL- 578

Query: 419 NTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIH 478
                                          G   D  T    L AC+H   +  G    
Sbjct: 579 -------------------------------GFAVDGITFLVVLYACSHSGMVDQGMIYF 607

Query: 479 HLAIKS-GYVNDLFVGNSLITMYAKCGRIQNAELLFKD--ADPVDVISWNSLIAGYAING 535
           H  +K  G          ++ +  + GR+  A  L K+   +P  V+ W +L++   I+ 
Sbjct: 608 HDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVV-WVALLSASRIHA 666

Query: 536 N 536
           N
Sbjct: 667 N 667



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 168/345 (48%), Gaps = 31/345 (8%)

Query: 271 IAAYVQRGQIEEAARLFIEM-PERNPVSW-TTMIDGYVRIAKLDEARRLLDQMPYKNIAA 328
           + AY++ G   EA  L   + P  + V W   +I   V++  LD+      QM  + +  
Sbjct: 66  VGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQM--QRLGW 123

Query: 329 QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
                +     K   E   +      H +VC N +                       ++
Sbjct: 124 LPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGL---------------------GSNV 162

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKRR--NTVSWNALISGFLQNEFHLDALKIFVLM 446
              N+++A Y +   +DDA ++F+E+ +R+  + VSWN++++ ++Q      AL+I   M
Sbjct: 163 FICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRM 222

Query: 447 TQEGK---KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
                   + D  TL   L ACA + ALQ G+Q+H  ++++G V+D+FVGN+L++MYAKC
Sbjct: 223 GNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKC 282

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
            ++  A  +F+     DV+SWN+++ GY+  G+   A+ LF+ M  E +  D +T+  V+
Sbjct: 283 SKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVI 342

Query: 564 SACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
           +  +  G     L +F  M ++Y +EP V   A ++   +  G L
Sbjct: 343 AGYAQKGHGFEALDVFRQM-QLYGLEPNVVTLASLLSGCASVGAL 386



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 172/384 (44%), Gaps = 71/384 (18%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  N  ++   K  ++ EA K+F  + +K+ V++N+M++ Y++ G  + A  LF+ M +
Sbjct: 269 VFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQE 328

Query: 75  RNL----VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEK 126
            ++    ++W+++IAGY       EA ++F +M      P++ + A +++     G L  
Sbjct: 329 EDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLY 388

Query: 127 ARELFDLL----------PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS--KNIVSW 174
            ++    +            ++D    N ++  YAK  +Y  A+ + D++    KN+V+W
Sbjct: 389 GKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTW 448

Query: 175 NSMLSGYTKNGEMHLASKFFEAM------------------------------------- 197
             M+ GY ++GE + A K F  +                                     
Sbjct: 449 TVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYA 508

Query: 198 -----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA 252
                E   +   N ++D Y +  D+D+A   F  +  +NVVSW ++++GY  +GR  EA
Sbjct: 509 LRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEA 568

Query: 253 RRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMID 303
             LFDQM       + + +  ++ A    G +++    F +M +   ++     +  M+D
Sbjct: 569 LHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVD 628

Query: 304 GYVRIAKLDEARRLLDQMPYKNIA 327
              R  +L+EA  L+  M  +  A
Sbjct: 629 LLGRAGRLNEAMELIKNMSMEPTA 652



 Score = 92.4 bits (228), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 116/240 (48%), Gaps = 20/240 (8%)

Query: 395 IAGYAQIRQMDDAVKIFEEMGKRRNTVSW-NALISGFLQNEFHLDALKIFVLMTQEGKKA 453
           +  Y +     +AV + + +    +TV W NALI   ++     D L  +  M + G   
Sbjct: 66  VGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLP 125

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
           DH T    L AC  + +L+ G  +H +   +G  +++F+ NS++ MY +CG + +A  +F
Sbjct: 126 DHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMF 185

Query: 514 KDA---DPVDVISWNSLIAGYAINGNATEAIKLFEEMVME---GVAPDPVTFIGVLSACS 567
            +       D++SWNS++A Y   G +  A+++   M       + PD +T + +L AC+
Sbjct: 186 DEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACA 245

Query: 568 HVGLVDGGLKLF------ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIK 621
            V  +  G ++         + +V+    LV  YA       +  +++EA ++ +G+K K
Sbjct: 246 SVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYA-------KCSKMNEANKVFEGIKKK 298



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 148/350 (42%), Gaps = 51/350 (14%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           KS RV  +I    +   KN VT+  MI  YA++G  NDA KLF Q+ ++           
Sbjct: 426 KSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQK---------- 475

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL--FDLLPNKEDTACW- 143
                             +P+ F+ +  +    R GEL   R+L  + L    E    + 
Sbjct: 476 ---------------TSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYV 520

Query: 144 -NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER-- 200
            N ++  Y+K G+ + A+ + D M  +N+VSW S+++GY  +G    A   F+ M++   
Sbjct: 521 GNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGF 580

Query: 201 --DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEAR 253
             D +++ ++L        +D    +F  + +   ++     +  M+    R GR+ EA 
Sbjct: 581 AVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAM 640

Query: 254 RLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTTMIDGYVRIA 309
            L   M +    V W A+++A      I   E AA    E+   N  S+T + + Y    
Sbjct: 641 ELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANAR 700

Query: 310 KLDEARRLLDQMPYKN---------IAAQTAMISGYVQNKRMDEANQIFD 350
           +  +  R+   M +           I  + +  + +V ++   E+ QI++
Sbjct: 701 RWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYN 750



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 9/148 (6%)

Query: 10  NKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLF 69
           N+   ++  N  I    KSG ++ A  +F  M  +N V++ S+++ Y  +GR  +A  LF
Sbjct: 513 NESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLF 572

Query: 70  EQMPQRNL----VSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTR 120
           +QM +       +++  ++    H+  V +    F  M +     P    +A M+    R
Sbjct: 573 DQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGR 632

Query: 121 KGELEKARELFDLLPNKEDTACWNAMVA 148
            G L +A EL   +  +     W A+++
Sbjct: 633 AGRLNEAMELIKNMSMEPTAVVWVALLS 660


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 193/577 (33%), Positives = 306/577 (53%), Gaps = 54/577 (9%)

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM----PIRNVVAWNA 269
             D L  A   F+ I E N++ W TML G+A +   + A  ++ +M     + N  ++  
Sbjct: 10  HFDGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPF 69

Query: 270 MIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           ++ +  +    EE  ++  ++ +     +    T++I  Y R   L++AR++ D   +++
Sbjct: 70  LLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRD 129

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-- 383
           + + TA+I+GY        A ++FD+I   DVV WN MI GY + GR +EA+ LF++M  
Sbjct: 130 VVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMR 189

Query: 384 ------------------------VNKDIVTW-----------------NTMIAGYAQIR 402
                                   + + + +W                 N +I  Y++  
Sbjct: 190 TNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCG 249

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
            ++ A  +FE +  + + VSWN LI G+     + +AL +F  M + G+  +  TL   L
Sbjct: 250 DVETAFGLFEGLSCK-DVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVL 308

Query: 463 SACAHLAALQLGRQIHHLAIKS--GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVD 520
            ACAHL A+ +GR IH    K   G  N+  +  SLI MYAKCG I+ A  +F       
Sbjct: 309 PACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRS 368

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE 580
           + SWN++I G+A++G A  A  LF  M    V PD +TF+G+LSACSH GL+D G ++F+
Sbjct: 369 LSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFK 428

Query: 581 CMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNI 640
            MT+ Y + P +EHY CMIDLL  +G   EA EM+  M ++P+  IW +LL AC+ H N+
Sbjct: 429 SMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNL 488

Query: 641 KLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEV 700
           +L     +KL ++EP+ +  Y LLSN++A AGRW++V +VR  + G G +K PGCS IEV
Sbjct: 489 ELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEV 548

Query: 701 KNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNTPLA 737
            + +H F+ GD    R  EI + L+ +  Q+     A
Sbjct: 549 DSVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFA 585



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 157/662 (23%), Positives = 277/662 (41%), Gaps = 123/662 (18%)

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTR 120
           A  +FE + + NL+ WN+M+ G+  +     A E++ +M      P+ +S+  ++    +
Sbjct: 17  AISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAK 76

Query: 121 KGELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSM 177
               E+ R++      L    D     ++++ YA+ G   +A+K+ DA   +++VS  ++
Sbjct: 77  SKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTAL 136

Query: 178 LSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV--- 234
           ++GY   G+   A K F+ + ERDVVSWN M+ GYVE    + A + F+++   NV    
Sbjct: 137 ITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDE 196

Query: 235 -SWVTMLSGYARNGRMLEARRLFDQMPI--------RNVVAWNAMIAAYVQRGQIEEAAR 285
            + V+++S  A++G +   R++   +           ++   NA+I  Y + G +E A  
Sbjct: 197 GTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFG 256

Query: 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM----PYKNIAAQTAMISGYVQNKR 341
           LF  +  ++ VSW T+I GY       EA  L  +M       N     +++        
Sbjct: 257 LFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGA 316

Query: 342 MDEANQIFDKIG------THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMI 395
           +D    I   I       T++      +I  YA+CG ++ A  +F  M+ + + +WN MI
Sbjct: 317 IDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMI 376

Query: 396 AGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADH 455
            G+A   + + A  +F  M  R N V                              + D 
Sbjct: 377 FGFAMHGRANAAFDLFSRM--RGNRV------------------------------EPDD 404

Query: 456 STLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD 515
            T    LSAC+H   L LGRQI                 S+   Y    ++++   +   
Sbjct: 405 ITFVGLLSACSHSGLLDLGRQIF---------------KSMTQDYNLTPKLEHYGCM--- 446

Query: 516 ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
              +D++  + L           EA ++   M ME   PD V +  +L AC       G 
Sbjct: 447 ---IDLLGHSGLF---------KEAEEMIHTMPME---PDGVIWCSLLKACKK----HGN 487

Query: 576 LKLFECMTE-VYAIEPLVE-HYACMIDLLSRAGRLDEAFEMV-----KGMKIKPNAGIWG 628
           L+L E   + +  IEP     Y  + ++ + AGR ++   +      KGMK  P      
Sbjct: 488 LELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGC---- 543

Query: 629 TLLGACRMHQNIKLGRIAVEKL--SELEPQKTSCYALLSNMHA---EAGRWDEVEKVRVS 683
                     +I++  +  E +   +L P++   Y +L  M     EAG   +  +V   
Sbjct: 544 ---------SSIEVDSVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVLQE 594

Query: 684 ME 685
           ME
Sbjct: 595 ME 596



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 188/395 (47%), Gaps = 33/395 (8%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           I+   ++G +E+A K+F   S ++ V+  ++I+ YA  G    ARK+F+++ +R++VSWN
Sbjct: 106 ISMYARNGGLEDARKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWN 165

Query: 82  SMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
           +MI GY+ N + +EA ELF +M     RPD  +   +++   + G +E  R++   + + 
Sbjct: 166 AMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDD 225

Query: 138 EDTACW-------NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           +D   +       NA++  Y+K G+   A  L + +  K++VSWN+++ GYT       A
Sbjct: 226 DDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEA 285

Query: 191 SKFFEAM----EERDVVSWNLMLDGYVELDDLD-SAW------KFFQKIPEQNVVSWVTM 239
              F+ M    E  + V+   +L     L  +D   W      K  + +  +  +   ++
Sbjct: 286 LLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLR-TSL 344

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNP 295
           +  YA+ G +  A ++F+ M  R++ +WNAMI  +   G+   A  LF  M     E + 
Sbjct: 345 IDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDD 404

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQMP-----YKNIAAQTAMISGYVQNKRMDEANQIFD 350
           +++  ++        LD  R++   M         +     MI     +    EA ++  
Sbjct: 405 ITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIH 464

Query: 351 KIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
            +    D V W  ++K   + G ++ A +  ++++
Sbjct: 465 TMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLI 499



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/427 (25%), Positives = 191/427 (44%), Gaps = 39/427 (9%)

Query: 4   SLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQK----NTVTYNSMISAYAKN 59
           SL  + N  S+ F     +    KS   EE  +I +Q+ +     +   + S+IS YA+N
Sbjct: 57  SLGHLPNSYSFPF----LLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARN 112

Query: 60  GRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYT 119
           G + DARK+F+    R++VS  ++I GY      + AR++FD++   D+ SW  MIT Y 
Sbjct: 113 GGLEDARKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYV 172

Query: 120 RKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMP--------S 168
             G  E+A ELF  +     + D     ++V+  A+ G+    +++   +         S
Sbjct: 173 ENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFS 232

Query: 169 KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI 228
            ++   N+++  Y+K G++  A   FE +  +DVVSWN ++ GY   +    A   FQ++
Sbjct: 233 SSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEM 292

Query: 229 PEQ----NVVSWVTMLSGYARNGRMLEAR--RLFDQMPIRNVV----AWNAMIAAYVQRG 278
                  N V+ +++L   A  G +   R   ++    ++ V        ++I  Y + G
Sbjct: 293 LRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCG 352

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMIS 334
            IE A ++F  M  R+  SW  MI G+    + + A  L  +M    +         ++S
Sbjct: 353 DIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLS 412

Query: 335 GYVQNKRMDEANQIFDKIG-----THDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDI 388
               +  +D   QIF  +      T  +  +  MI      G   EA  +   M +  D 
Sbjct: 413 ACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDG 472

Query: 389 VTWNTMI 395
           V W +++
Sbjct: 473 VIWCSLL 479


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 226/781 (28%), Positives = 385/781 (49%), Gaps = 69/781 (8%)

Query: 20  KKITQLGKSGRVEEAIKIFSQM----SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           K I     S  V + I I S +     Q++    N+++S Y K   V +AR+LF++MP R
Sbjct: 20  KDIVSFCNSRSVRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCR 79

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELF 131
           ++ SW  +++ Y      +EA ELFD M      P+ F+ +  +   +   E        
Sbjct: 80  DVASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQ 139

Query: 132 DLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
            L+       +    +A++  Y+K G   EA ++ + M + +IVSW  M+S + + G   
Sbjct: 140 ALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWS 199

Query: 189 LASKFFEAMEERDVVSWN------LMLDGYVELD--DLDSAWKFFQKIPEQNVVSWVTML 240
            A + +  M +  V          L    ++ L+   L  A     +I E N+V    ++
Sbjct: 200 QALQLYHRMIQTGVAPNEFTFVKLLAASSFLGLNYGKLVHAHLMMWRI-ELNLVLKTALV 258

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPV 296
             Y +   + +A ++       +V  W A+I+ + Q  +  EA   F EM       N  
Sbjct: 259 DMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNF 318

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPY----KNIAAQTAMISGYVQNKRM-DEANQIFDK 351
           +++ +++    I  LD  +++  ++       +++   +++  Y++   M ++A + F  
Sbjct: 319 TYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRG 378

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM---------------------------- 383
           I + +V+ W  +I G+++ G  +E+I +F  M                            
Sbjct: 379 IASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGTIKSLTQT 438

Query: 384 -----------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
                       + D+V  N ++  YA +  +DDA  +   M K R+ +++ +L +   Q
Sbjct: 439 RKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHV-TSMMKHRDVITYTSLATRINQ 497

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
              H  AL I   M ++  + D  +LA  LSA A +  ++ G+Q+H  ++KSG  + + V
Sbjct: 498 TGNHEMALNIITHMNKDDVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSGLGSWISV 557

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
            N L+ +Y KCG I +A   F +    D +SWN LI G A NG+ + A+  FE+M + GV
Sbjct: 558 SNGLVDLYGKCGCIHDAHRSFLEITEPDAVSWNGLIFGLASNGHVSSALSAFEDMRLAGV 617

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
            PD +T + VL ACSH GLVD GL  F+ M E + I P ++HY C++DLL RAGRL+EA 
Sbjct: 618 EPDQITCLLVLYACSHGGLVDMGLDYFQSMREKHGIRPQLDHYVCLVDLLGRAGRLEEAM 677

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672
            +++ M  KP+A I+ TLLGAC++H NI LG     +  EL+P   + Y LL+N++ ++G
Sbjct: 678 NVIETMPFKPDALIYKTLLGACKLHGNIPLGEHMARQGLELDPSDPAFYVLLANLYDDSG 737

Query: 673 RWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           R +  EK R  M   G +K PG SW+E +N +H F +GD    +  +I   +++L AQ R
Sbjct: 738 RSELGEKTRRMMRERGVRKNPGQSWMEERNMVHLFTAGDTSHPQIGKIHEKIESLIAQFR 797

Query: 733 N 733
           N
Sbjct: 798 N 798



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 89/169 (52%), Gaps = 4/169 (2%)

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
            K ++S L   +S C +  +++ G  IH   IK G+  D+F+ N+L+++Y KC  +  A 
Sbjct: 12  SKIEYSLLKDIVSFC-NSRSVRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEAR 70

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
            LF +    DV SW  L++ Y   GN  EA++LF+ M++ G  P+  T    L +CS + 
Sbjct: 71  QLFDEMPCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALR 130

Query: 571 LVDGGLKLFECMTEV-YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
             + G +    +T+  +   P++   + +ID  S+ G   EA+ + + M
Sbjct: 131 EFNHGTRFQALVTKSGFDSNPVLG--SALIDFYSKCGCTQEAYRVFEYM 177



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 14/204 (6%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS++   N  +   GK G + +A + F ++++ + V++N +I   A NG V+ A   FE 
Sbjct: 552 GSWISVSNGLVDLYGKCGCIHDAHRSFLEITEPDAVSWNGLIFGLASNGHVSSALSAFED 611

Query: 72  MP----QRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKG 122
           M     + + ++   ++    H   V    + F  M      RP L  +  ++    R G
Sbjct: 612 MRLAGVEPDQITCLLVLYACSHGGLVDMGLDYFQSMREKHGIRPQLDHYVCLVDLLGRAG 671

Query: 123 ELEKARELFDLLPNKEDTACWNAMVAGYAKIGNY----NEAKKLLDAMPSKNIVSWNSML 178
            LE+A  + + +P K D   +  ++      GN     + A++ L+  PS +   +  + 
Sbjct: 672 RLEEAMNVIETMPFKPDALIYKTLLGACKLHGNIPLGEHMARQGLELDPS-DPAFYVLLA 730

Query: 179 SGYTKNGEMHLASKFFEAMEERDV 202
           + Y  +G   L  K    M ER V
Sbjct: 731 NLYDDSGRSELGEKTRRMMRERGV 754


>gi|302773754|ref|XP_002970294.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
 gi|300161810|gb|EFJ28424.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
          Length = 1096

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 218/726 (30%), Positives = 380/726 (52%), Gaps = 66/726 (9%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVS---WNSMIAGYLHNDKVKEARELFDKM--- 103
           NS+++ Y K G V+ AR +FE+M  R+++S   W  +IA + HN  + EA  LF KM   
Sbjct: 267 NSLVNMYGKCGSVDHARLVFEKMRLRDVLSVYSWTVIIAAFAHNGHLLEAFVLFYKMDLE 326

Query: 104 -FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKL 162
              P+  ++  ++   T   + EK       L  + DT    A V+ +AK+G+   A+ +
Sbjct: 327 GVLPNKVTFVTVLRACTTLAQCEKIFARVKHLGLELDTTLGTAFVSTFAKLGDLAAARDV 386

Query: 163 LDAM-PSKNIVSWNSMLSGYTKNGEMHLASKFFEAME-ERDVVSWNLMLDGYVELDDLDS 220
            + +  S+N+VSW  M+  Y + G +  A   ++ M+ E + V++  ++D  +  +DL  
Sbjct: 387 FENLGSSRNVVSWTVMIWAYAQQGFIRAAFDLYKRMDCEPNAVTFMAVMDSCLRPEDLPR 446

Query: 221 AWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ 276
           A +    +     E +VV  V +++ Y + G +  A  +F+ +  R+VVAWN+M++A+  
Sbjct: 447 AEQIHAHMVASGFESDVVLQVCLVTMYGKCGSVDSAWSIFENLKERSVVAWNSMLSAFAS 506

Query: 277 RGQIEEAARLF----IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTA 331
            G  E + +L+    +E  + + +++  ++D       + EARR       + +IAA+ A
Sbjct: 507 NGCYERSLKLYERMLLEGTKPDKITYLAVLDA---CQSVSEARRYAATFELELDIAARNA 563

Query: 332 MISGYVQNKRMDEANQIFDKIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNK 386
            +S Y +   + EA   FD I   ++ V WN MI G AQ G   +A+  F +M    V  
Sbjct: 564 AVSAYARCGSLKEAKAAFDAIQWKNNAVTWNAMISGLAQHGESKQALECFWKMELEGVRA 623

Query: 387 DIVTW----------------------------------NTMIAGYAQIRQMDDAVKIFE 412
           + VT+                                  N +I  Y +   +D+A+  F 
Sbjct: 624 NSVTYLASLEACSSLKDLTRGRQLHARILLENIHEANLSNAVINMYGKCGSLDEAMDEFV 683

Query: 413 EMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQ 472
           +M   R+ +SWN +I+ + Q+     AL+ F  M  EG   D +T   A+ AC  + +L 
Sbjct: 684 KM-PERDVISWNTMIATYAQHGSGRQALEFFKQMDLEGWTPDRATYLGAIDACGSVPSLA 742

Query: 473 LGRQIHHLAIKSGYV--NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
           LG+ IH +   +      D  V  +L+TMYA+CG + +A+ +F  +   ++++W++LIA 
Sbjct: 743 LGKTIHSIVATAAPCLEQDPGVATALVTMYARCGSLHDAKSVFWRSHSRNLVTWSNLIAA 802

Query: 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV-DGGLKLFECMTEVYAIE 589
            A +G   EA+ LF EM ++G  PD +TF  +++ACS  G+V DGG ++F+ +  VY + 
Sbjct: 803 CAQHGRENEALDLFREMQLQGTKPDALTFSTLVAACSRRGVVKDGGRRIFDALGRVYPVS 862

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649
              EHY CM+++L RAG+L+EA  +++GM  K +  IW  LL AC    +++ G  A  +
Sbjct: 863 ASAEHYGCMVEVLGRAGKLEEAEGLIQGMPRKASGAIWMALLAACNRRGDLERGIRAANR 922

Query: 650 LSELEPQK-TSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGC-SWIEVKNQIHTF 707
             +L+P    +  A+L+ ++  AGRW++  +VR ++E   A+++PG  SWIEV N++H F
Sbjct: 923 AQQLDPGSFAASMAMLAELYGAAGRWEDAARVRKAVESRNARREPGGRSWIEVNNRVHEF 982

Query: 708 LSGDPK 713
              D +
Sbjct: 983 GEDDDR 988



 Score =  242 bits (618), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 194/751 (25%), Positives = 349/751 (46%), Gaps = 104/751 (13%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF--- 100
           +  V  N++++ Y K GRV++A+ +FE++P+RNLVSWN++IA    N   K+A ++F   
Sbjct: 159 ETQVVGNAIVNLYGKCGRVHEAKAVFERLPERNLVSWNALIAANAQNGHCKDAMQVFQLM 218

Query: 101 --DKMFRPDLFSWALMITCYTRKGELEKARELFD-LLPNKEDTACW--NAMVAGYAKIGN 155
             D   RP+  ++  ++   +   +L + +   + ++    D+  +  N++V  Y K G+
Sbjct: 219 DLDGSVRPNDATFVSVVDACSNLLDLPRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGS 278

Query: 156 YNEAKKLLDAMPSKNIV---SWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLM 208
            + A+ + + M  ++++   SW  +++ +  NG +  A   F  M+   V    V++  +
Sbjct: 279 VDHARLVFEKMRLRDVLSVYSWTVIIAAFAHNGHLLEAFVLFYKMDLEGVLPNKVTFVTV 338

Query: 209 LDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQM-PIRN 263
           L     L   +   K F ++     E +       +S +A+ G +  AR +F+ +   RN
Sbjct: 339 LRACTTLAQCE---KIFARVKHLGLELDTTLGTAFVSTFAKLGDLAAARDVFENLGSSRN 395

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
           VV+W  MI AY Q+G I  A  L+  M  E N V++  ++D  +R   L  A ++   M 
Sbjct: 396 VVSWTVMIWAYAQQGFIRAAFDLYKRMDCEPNAVTFMAVMDSCLRPEDLPRAEQIHAHMV 455

Query: 323 Y----KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
                 ++  Q  +++ Y +   +D A  IF+ +    VV WN M+  +A  G  + ++ 
Sbjct: 456 ASGFESDVVLQVCLVTMYGKCGSVDSAWSIFENLKERSVVAWNSMLSAFASNGCYERSLK 515

Query: 379 LFRQMVNK---------------------------------DIVTWNTMIAGYAQIRQMD 405
           L+ +M+ +                                 DI   N  ++ YA+   + 
Sbjct: 516 LYERMLLEGTKPDKITYLAVLDACQSVSEARRYAATFELELDIAARNAAVSAYARCGSLK 575

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
           +A   F+ +  + N V+WNA+ISG  Q+     AL+ F  M  EG +A+  T   +L AC
Sbjct: 576 EAKAAFDAIQWKNNAVTWNAMISGLAQHGESKQALECFWKMELEGVRANSVTYLASLEAC 635

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
           + L  L  GRQ+H   +    +++  + N++I MY KCG +  A   F      DVISWN
Sbjct: 636 SSLKDLTRGRQLHARILLEN-IHEANLSNAVINMYGKCGSLDEAMDEFVKMPERDVISWN 694

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE----- 580
           ++IA YA +G+  +A++ F++M +EG  PD  T++G + AC  V  +  G  +       
Sbjct: 695 TMIATYAQHGSGRQALEFFKQMDLEGWTPDRATYLGAIDACGSVPSLALGKTIHSIVATA 754

Query: 581 --CMTEVYAI-EPLVEHYA-C-----------------------MIDLLSRAGRLDEAFE 613
             C+ +   +   LV  YA C                       +I   ++ GR +EA +
Sbjct: 755 APCLEQDPGVATALVTMYARCGSLHDAKSVFWRSHSRNLVTWSNLIAACAQHGRENEALD 814

Query: 614 MVKGMKI---KPNAGIWGTLLGACRMHQNIK-LGRIAVEKLSELEPQKTSC--YALLSNM 667
           + + M++   KP+A  + TL+ AC     +K  GR   + L  + P   S   Y  +  +
Sbjct: 815 LFREMQLQGTKPDALTFSTLVAACSRRGVVKDGGRRIFDALGRVYPVSASAEHYGCMVEV 874

Query: 668 HAEAGRWDEVEKVRVSMEGSGAQKQPGCSWI 698
              AG+ +E E +   M     +K  G  W+
Sbjct: 875 LGRAGKLEEAEGLIQGMP----RKASGAIWM 901



 Score =  222 bits (565), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 173/682 (25%), Positives = 321/682 (47%), Gaps = 80/682 (11%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           I S     N    N +I  YAK G + DA ++FE +P  N+ SW ++I  Y     ++E 
Sbjct: 52  ILSSGCGVNRYLQNHLIFMYAKCGCLQDAVEVFELLPCPNVFSWTALITAYAKEGHLREV 111

Query: 97  RELFDKM----FRPDLFSWALMITCYTRKGELEKARELFD--LLPNKEDTACWNAMVAGY 150
              F KM     +PD F ++ ++T  +  G L + + + D  +L   E     NA+V  Y
Sbjct: 112 LGFFRKMQLDGTKPDAFVFSTVLTACSSAGALNEGKAIHDCVVLAGMETQVVGNAIVNLY 171

Query: 151 AKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN---- 206
            K G  +EAK + + +P +N+VSWN++++   +NG    A + F+ M+    V  N    
Sbjct: 172 GKCGRVHEAKAVFERLPERNLVSWNALIAANAQNGHCKDAMQVFQLMDLDGSVRPNDATF 231

Query: 207 -LMLDGYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPI 261
             ++D    L DL       ++I      S++    ++++ Y + G +  AR +F++M +
Sbjct: 232 VSVVDACSNLLDLPRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDHARLVFEKMRL 291

Query: 262 RNVV---AWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEA 314
           R+V+   +W  +IAA+   G + EA  LF +M       N V++ T++     +A+ ++ 
Sbjct: 292 RDVLSVYSWTVIIAAFAHNGHLLEAFVLFYKMDLEGVLPNKVTFVTVLRACTTLAQCEKI 351

Query: 315 RRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIG-THDVVCWNVMIKGYAQCGR 372
              +  +  + +    TA +S + +   +  A  +F+ +G + +VV W VMI  YAQ G 
Sbjct: 352 FARVKHLGLELDTTLGTAFVSTFAKLGDLAAARDVFENLGSSRNVVSWTVMIWAYAQQGF 411

Query: 373 MDEAINLFRQM------------------------------------VNKDIVTWNTMIA 396
           +  A +L+++M                                       D+V    ++ 
Sbjct: 412 IRAAFDLYKRMDCEPNAVTFMAVMDSCLRPEDLPRAEQIHAHMVASGFESDVVLQVCLVT 471

Query: 397 GYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHS 456
            Y +   +D A  IFE + K R+ V+WN+++S F  N  +  +LK++  M  EG K D  
Sbjct: 472 MYGKCGSVDSAWSIFENL-KERSVVAWNSMLSAFASNGCYERSLKLYERMLLEGTKPDKI 530

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
           T    L AC  ++  +       L +      D+   N+ ++ YA+CG ++ A+  F   
Sbjct: 531 TYLAVLDACQSVSEARRYAATFELEL------DIAARNAAVSAYARCGSLKEAKAAF--- 581

Query: 517 DPV----DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
           D +    + ++WN++I+G A +G + +A++ F +M +EGV  + VT++  L ACS +  +
Sbjct: 582 DAIQWKNNAVTWNAMISGLAQHGESKQALECFWKMELEGVRANSVTYLASLEACSSLKDL 641

Query: 573 DGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLG 632
             G +L   +      E  + +   +I++  + G LDEA +    M  + +   W T++ 
Sbjct: 642 TRGRQLHARILLENIHEANLSN--AVINMYGKCGSLDEAMDEFVKMPER-DVISWNTMIA 698

Query: 633 ACRMHQNIKLGRIAVEKLSELE 654
               H +   GR A+E   +++
Sbjct: 699 TYAQHGS---GRQALEFFKQMD 717



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 141/581 (24%), Positives = 257/581 (44%), Gaps = 66/581 (11%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----E 199
           N ++  YAK G   +A ++ + +P  N+ SW ++++ Y K G +     FF  M+    +
Sbjct: 65  NHLIFMYAKCGCLQDAVEVFELLPCPNVFSWTALITAYAKEGHLREVLGFFRKMQLDGTK 124

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT---MLSGYARNGRMLEARRLF 256
            D   ++ +L        L+        +    + + V    +++ Y + GR+ EA+ +F
Sbjct: 125 PDAFVFSTVLTACSSAGALNEGKAIHDCVVLAGMETQVVGNAIVNLYGKCGRVHEAKAVF 184

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-----ERNPVSWTTMIDGYVRIAKL 311
           +++P RN+V+WNA+IAA  Q G  ++A ++F  M        N  ++ +++D    +  L
Sbjct: 185 ERLPERNLVSWNALIAANAQNGHCKDAMQVFQLMDLDGSVRPNDATFVSVVDACSNLLDL 244

Query: 312 DEAR----RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC---WNVMI 364
              +    R++       +    ++++ Y +   +D A  +F+K+   DV+    W V+I
Sbjct: 245 PRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDHARLVFEKMRLRDVLSVYSWTVII 304

Query: 365 KGYAQCGRMDEAINLFRQM------------------------------------VNKDI 388
             +A  G + EA  LF +M                                    +  D 
Sbjct: 305 AAFAHNGHLLEAFVLFYKMDLEGVLPNKVTFVTVLRACTTLAQCEKIFARVKHLGLELDT 364

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
                 ++ +A++  +  A  +FE +G  RN VSW  +I  + Q  F   A  ++  M  
Sbjct: 365 TLGTAFVSTFAKLGDLAAARDVFENLGSSRNVVSWTVMIWAYAQQGFIRAAFDLYKRMDC 424

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
           E    +  T    + +C     L    QIH   + SG+ +D+ +   L+TMY KCG + +
Sbjct: 425 E---PNAVTFMAVMDSCLRPEDLPRAEQIHAHMVASGFESDVVLQVCLVTMYGKCGSVDS 481

Query: 509 AELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
           A  +F++     V++WNS+++ +A NG    ++KL+E M++EG  PD +T++ VL AC  
Sbjct: 482 AWSIFENLKERSVVAWNSMLSAFASNGCYERSLKLYERMLLEGTKPDKITYLAVLDACQS 541

Query: 569 VGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWG 628
           V         FE   ++ A    V  YA       R G L EA      ++ K NA  W 
Sbjct: 542 VSEARRYAATFELELDIAARNAAVSAYA-------RCGSLKEAKAAFDAIQWKNNAVTWN 594

Query: 629 TLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHA 669
            ++     H   K       K+ ELE  + +    L+++ A
Sbjct: 595 AMISGLAQHGESKQALECFWKM-ELEGVRANSVTYLASLEA 634



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 90/172 (52%), Gaps = 3/172 (1%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           L  CA   +   G+ +H   + SG   + ++ N LI MYAKCG +Q+A  +F+     +V
Sbjct: 33  LQKCAEQKSAAAGKLVHQHILSSGCGVNRYLQNHLIFMYAKCGCLQDAVEVFELLPCPNV 92

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC 581
            SW +LI  YA  G+  E +  F +M ++G  PD   F  VL+ACS  G ++ G  + +C
Sbjct: 93  FSWTALITAYAKEGHLREVLGFFRKMQLDGTKPDAFVFSTVLTACSSAGALNEGKAIHDC 152

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
           +  +  +E  V   A +++L  + GR+ EA  + + +  + N   W  L+ A
Sbjct: 153 VV-LAGMETQVVGNA-IVNLYGKCGRVHEAKAVFERLPER-NLVSWNALIAA 201


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  342 bits (877), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 221/721 (30%), Positives = 365/721 (50%), Gaps = 100/721 (13%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPD-- 107
           N++++ Y K G      K+F+++ +RN VSWNS+I+     +K + A E F  M   D  
Sbjct: 133 NTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVE 192

Query: 108 -----LFSWALMITCYTRKGELEKAREL--FDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
                L S AL  + +     L   +++  + L   + ++   N +VA Y K+G    +K
Sbjct: 193 PSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSFIINTLVAMYGKMGKLASSK 252

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE-RDVVSWNLMLDGYV------ 213
            LL +   +++V+WN++LS   +N       +F EA+E  R++V   +  DG+       
Sbjct: 253 VLLGSFEGRDLVTWNTVLSSLCQN------EQFLEALEYLREMVLEGVEPDGFTISSVLP 306

Query: 214 ---ELDDLDS-----AWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
               L+ L +     A+       ++N      ++  Y    ++L   R+FD M  R + 
Sbjct: 307 ACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIG 366

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPER-----NPVSWTTMIDGYVRIAKLDE------- 313
            WNAMI  Y Q    EEA  LFIEM E      N  +   ++   VR     +       
Sbjct: 367 LWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGF 426

Query: 314 -ARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGR 372
             +R LD+  +     Q A++  Y +  ++D A +IF K+   D+V WN +I GY    R
Sbjct: 427 VVKRGLDRDRF----VQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSER 482

Query: 373 MDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
            ++A+ +  +M                         +I E     R              
Sbjct: 483 HEDALLMLHKM-------------------------QILERKASER-------------- 503

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
                         ++   K +  TL   L +CA L+AL  G++IH  AIK+    D+ V
Sbjct: 504 -------------ASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAV 550

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
           G++L+ MYAKCG +Q +  +F      +VI+WN ++  Y ++GN+ +AI +   M+++GV
Sbjct: 551 GSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGV 610

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
            P+ VTFI V +ACSH G+V+ GLK+F  M + Y +EP  +HYAC++DLL RAGR+ EA+
Sbjct: 611 KPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAY 670

Query: 613 EMVKGMKIK-PNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEA 671
           +++  +      AG W +LLGACR+H N+++G IA + L +LEP   S Y LL+N+++ A
Sbjct: 671 QLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSA 730

Query: 672 GRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           G W +  +VR +M+  G +K+PGCSWIE  +++H F++GD    ++ ++   L+TL  ++
Sbjct: 731 GLWYKATEVRRNMKAQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLRGYLETLWERM 790

Query: 732 R 732
           R
Sbjct: 791 R 791



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 93/428 (21%), Positives = 188/428 (43%), Gaps = 72/428 (16%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           N+   N++++ Y K G++  ++ L      R+LV+WN++++    N++  EA E   +M 
Sbjct: 231 NSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMV 290

Query: 104 ---FRPDLFSWALMITCYTRKGELEKARELFDL-LPN---KEDTACWNAMVAGYAKIGNY 156
                PD F+ + ++   +    L   +EL    L N    E++   +A+V  Y      
Sbjct: 291 LEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQV 350

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE----------------- 199
               ++ D M  + I  WN+M++GY +N     A   F  MEE                 
Sbjct: 351 LSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPA 410

Query: 200 -----------------------RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSW 236
                                  RD    N ++D Y  L  +D A + F K+ ++++V+W
Sbjct: 411 CVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTW 470

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
            T+++GY  + R  +A  +  +M I             ++R   E A+R+ +   + N +
Sbjct: 471 NTIITGYVFSERHEDALLMLHKMQI-------------LERKASERASRVSL---KPNSI 514

Query: 297 SWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
           +  T++     ++ L + + +    +      ++A  +A++  Y +   +  + ++FD+I
Sbjct: 515 TLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQI 574

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAV 408
              +V+ WNV++  Y   G   +AI++ R M    V  + VT+ ++ A  +    +++ +
Sbjct: 575 PIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGL 634

Query: 409 KIFEEMGK 416
           KIF  M K
Sbjct: 635 KIFYNMKK 642



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 142/322 (44%), Gaps = 44/322 (13%)

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAK----LDEARR 316
           + +V   N ++  Y + G      ++F  + ERN VSW ++I       K    L+  R 
Sbjct: 126 VDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRC 185

Query: 317 LLDQ--MPYKNIAAQTAM-ISGYVQNKRMDEANQIFD---KIGTHDVVCWNVMIKGYAQC 370
           +LD+   P        A+  S +   + +    Q+     + G  +    N ++  Y + 
Sbjct: 186 MLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSFIINTLVAMYGKM 245

Query: 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
           G++  +  L      +D+VTWNT++                                S  
Sbjct: 246 GKLASSKVLLGSFEGRDLVTWNTVL--------------------------------SSL 273

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND- 489
            QNE  L+AL+    M  EG + D  T++  L AC+HL  L+ G+++H  A+K+G +++ 
Sbjct: 274 CQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDEN 333

Query: 490 LFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549
            FVG++L+ MY  C ++ +   +F       +  WN++I GYA N    EA+ LF EM  
Sbjct: 334 SFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEE 393

Query: 550 E-GVAPDPVTFIGVLSACSHVG 570
             G+  +  T  GV+ AC   G
Sbjct: 394 SAGLLANSTTMAGVVPACVRSG 415



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 132/287 (45%), Gaps = 27/287 (9%)

Query: 24  QLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSM 83
           ++ ++G+   A  + +    +N+   ++++  Y    +V    ++F+ M  R +  WN+M
Sbjct: 312 EMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAM 371

Query: 84  IAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFDLLPNK- 137
           I GY  N+  +EA  LF +M        +  + A ++    R G   K   +   +  + 
Sbjct: 372 ITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRG 431

Query: 138 --EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
              D    NA++  Y+++G  + AK++   M  +++V+WN++++GY  +     A     
Sbjct: 432 LDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLH 491

Query: 196 AME--ER-------------DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
            M+  ER             + ++   +L     L  L    +      + N+ + V + 
Sbjct: 492 KMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVG 551

Query: 241 SG----YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEA 283
           S     YA+ G +  +R++FDQ+PIRNV+ WN ++ AY   G  ++A
Sbjct: 552 SALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDA 598



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 1/155 (0%)

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482
           W  L+   +++    +A+  ++ M   G K D+      L A A L  + LG+QIH    
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 483 KSGY-VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
           K GY V+ + V N+L+ +Y KCG       +F      + +SWNSLI+          A+
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGL 576
           + F  M+ E V P   T + V  ACS+  + +G L
Sbjct: 181 EAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLL 215



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 95/197 (48%), Gaps = 19/197 (9%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDA----RKLFEQMPQRNL 77
           +    K G ++ + K+F Q+  +N +T+N ++ AY  +G   DA    R +  Q  + N 
Sbjct: 555 VDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNE 614

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFD 132
           V++ S+ A   H+  V E  ++F  M       P    +A ++    R G +++A +L +
Sbjct: 615 VTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLIN 674

Query: 133 LLPNKEDTA-CWNAMVAGYAKIGNYNE-----AKKLLDAMPSKNIVSWNSMLSG-YTKNG 185
           L+P   D A  W++++ G  +I N  E     A+ L+   P  N+ S   +L+  Y+  G
Sbjct: 675 LIPRNFDKAGAWSSLL-GACRIHNNLEIGEIAAQNLIQLEP--NVASHYVLLANIYSSAG 731

Query: 186 EMHLASKFFEAMEERDV 202
             + A++    M+ + V
Sbjct: 732 LWYKATEVRRNMKAQGV 748


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 200/564 (35%), Positives = 304/564 (53%), Gaps = 32/564 (5%)

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA--RRLF 256
           + D+     +LD YV+   L  A   F  +P +++V+W  ML+GYA +G    A    L 
Sbjct: 42  QADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLS 101

Query: 257 DQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEM------PERNPVS--------W 298
            QM +     N     A++    Q+G + +   +          P RN  S         
Sbjct: 102 MQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLG 161

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV 358
           T ++D Y +   L  ARR+ D MP +N    +A+I G+V   RM +A  +F  +    + 
Sbjct: 162 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGL- 220

Query: 359 CW---NVMIKGYAQCG-----RMDEAIN--LFRQMVNKDIVTWNTMIAGYAQIRQMDDAV 408
           C+     +      C      RM E ++  L +  V+ D+   N++++ YA+   +D A+
Sbjct: 221 CFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAI 280

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
            +F+EM  + +TVS++AL+SG++QN    +A  +F  M     + D +T+   + AC+HL
Sbjct: 281 ALFDEMAVK-DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHL 339

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
           AALQ GR  H   I  G  ++  + N+LI MYAKCGRI  +  +F      D++SWN++I
Sbjct: 340 AALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMI 399

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI 588
           AGY I+G   EA  LF EM   G  PD VTFI +LSACSH GLV  G   F  M   Y +
Sbjct: 400 AGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGL 459

Query: 589 EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVE 648
            P +EHY CM+DLLSR G LDEA+E ++ M ++ +  +W  LLGACR+++NI LG+    
Sbjct: 460 TPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSR 519

Query: 649 KLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFL 708
            + EL P+ T  + LLSN+++ AGR+DE  +VR+  +  G +K PGCSWIE+   +H F+
Sbjct: 520 MIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFV 579

Query: 709 SGDPKQCRTAEICNTLKTLAAQIR 732
            GD    ++ EI   L  +   I+
Sbjct: 580 GGDQSHPQSPEIYRELDNILVGIK 603



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/414 (26%), Positives = 196/414 (47%), Gaps = 40/414 (9%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           Q +     +++  Y K   + DA  +F  MP R+LV+WN+M+AGY H+     A      
Sbjct: 42  QADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLS 101

Query: 103 M------FRPDLFSWALMITCYTRKGELEKARELFD------LLPNKEDTA-------CW 143
           M       RP+  +   ++    ++G L +   +        L PN+   +         
Sbjct: 102 MQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLG 161

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV- 202
            A++  YAK G+   A+++ DAMP++N V+W++++ G+     M  A   F+AM  + + 
Sbjct: 162 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 221

Query: 203 ----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT----MLSGYARNGRMLEARR 254
                S    L     LD L    +    + +  V + +T    +LS YA+ G + +A  
Sbjct: 222 FLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIA 281

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAK 310
           LFD+M +++ V+++A+++ YVQ G+ EEA  +F +M     E +  +  ++I     +A 
Sbjct: 282 LFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAA 341

Query: 311 LDEARRLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG 366
           L   R     +  + +A++T    A+I  Y +  R+D + Q+F+ + + D+V WN MI G
Sbjct: 342 LQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAG 401

Query: 367 YAQCGRMDEAINLFRQMVN----KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
           Y   G   EA  LF +M N     D VT+  +++  +    + +    F  MG 
Sbjct: 402 YGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGH 455



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 92/408 (22%), Positives = 167/408 (40%), Gaps = 71/408 (17%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K G +  A ++F  M  +N VT++++I  +    R+  A  LF+ M  + L         
Sbjct: 170 KCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC-------- 221

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACW 143
                              P   + AL   C +    L    +L  LL       D    
Sbjct: 222 ----------------FLSPTSIASALR-ACASLD-HLRMGEQLHALLAKSGVHADLTAG 263

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----E 199
           N++++ YAK G  ++A  L D M  K+ VS+++++SGY +NG    A   F+ M+    E
Sbjct: 264 NSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVE 323

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG----YARNGRMLEARRL 255
            D  +   ++     L  L         +  + + S  ++ +     YA+ GR+  +R++
Sbjct: 324 PDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQV 383

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKL 311
           F+ MP R++V+WN MIA Y   G  +EA  LF+EM       + V++  ++        +
Sbjct: 384 FNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLV 443

Query: 312 DEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
            E +     M +           GY    RM+           H +   +++ +G    G
Sbjct: 444 IEGKHWFHVMGH-----------GYGLTPRME-----------HYICMVDLLSRG----G 477

Query: 372 RMDEAINLFRQM-VNKDIVTWNTMIAGYAQIRQMDDAVKI---FEEMG 415
            +DEA    + M +  D+  W  ++      + +D   K+    +E+G
Sbjct: 478 FLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELG 525



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 118/240 (49%), Gaps = 19/240 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  ++   K+G +++AI +F +M+ K+TV+Y++++S Y +NGR  +A  +F++M   N+ 
Sbjct: 264 NSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVE 323

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWA----LMITCYTRKGELEKAREL 130
               +  S+I    H   ++  R     +    L S       +I  Y + G ++ +R++
Sbjct: 324 PDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQV 383

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGE 186
           F+++P++ D   WN M+AGY   G   EA  L   M +       V++  +LS  + +G 
Sbjct: 384 FNMMPSR-DIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGL 442

Query: 187 MHLASKFFEAMEERDVVS-----WNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSWVTML 240
           +     +F  M     ++     +  M+D       LD A++F Q +P   +V  WV +L
Sbjct: 443 VIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALL 502



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
           T   AL AC+ LA    GR IH  AI +G   DLFV  +L+ MY KC  + +A  +F   
Sbjct: 12  TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 71

Query: 517 DPVDVISWNSLIAGYAINGNATEAIK--LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574
              D+++WN+++AGYA +G    A+   L  +M M  + P+  T + +L   +  G +  
Sbjct: 72  PARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 131

Query: 575 G 575
           G
Sbjct: 132 G 132


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  342 bits (876), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 200/564 (35%), Positives = 304/564 (53%), Gaps = 32/564 (5%)

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA--RRLF 256
           + D+     +LD YV+   L  A   F  +P +++V+W  ML+GYA +G    A    L 
Sbjct: 42  QADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLS 101

Query: 257 DQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEM------PERNPVS--------W 298
            QM +     N     A++    Q+G + +   +          P RN  S         
Sbjct: 102 MQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLG 161

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV 358
           T ++D Y +   L  ARR+ D MP +N    +A+I G+V   RM +A  +F  +    + 
Sbjct: 162 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGL- 220

Query: 359 CW---NVMIKGYAQCG-----RMDEAIN--LFRQMVNKDIVTWNTMIAGYAQIRQMDDAV 408
           C+     +      C      RM E ++  L +  V+ D+   N++++ YA+   +D A+
Sbjct: 221 CFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAI 280

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
            +F+EM  + +TVS++AL+SG++QN    +A  +F  M     + D +T+   + AC+HL
Sbjct: 281 ALFDEMAVK-DTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHL 339

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
           AALQ GR  H   I  G  ++  + N+LI MYAKCGRI  +  +F      D++SWN++I
Sbjct: 340 AALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMI 399

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI 588
           AGY I+G   EA  LF EM   G  PD VTFI +LSACSH GLV  G   F  M   Y +
Sbjct: 400 AGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGL 459

Query: 589 EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVE 648
            P +EHY CM+DLLSR G LDEA+E ++ M ++ +  +W  LLGACR+++NI LG+    
Sbjct: 460 TPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSR 519

Query: 649 KLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFL 708
            + EL P+ T  + LLSN+++ AGR+DE  +VR+  +  G +K PGCSWIE+   +H F+
Sbjct: 520 MIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFV 579

Query: 709 SGDPKQCRTAEICNTLKTLAAQIR 732
            GD    ++ EI   L  +   I+
Sbjct: 580 GGDQSHPQSPEIYRELDNILVGIK 603



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 196/413 (47%), Gaps = 40/413 (9%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           Q +     +++  Y K   + DA  +F  MP R+LV+WN+M+AGY H+     A      
Sbjct: 42  QADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLS 101

Query: 103 M------FRPDLFSWALMITCYTRKGELEKARELFD------LLPNKEDTA-------CW 143
           M       RP+  +   ++    ++G L +   +        L PN+   +         
Sbjct: 102 MQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLG 161

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV- 202
            A++  YAK G+   A+++ DAMP++N V+W++++ G+     M  A   F+AM  + + 
Sbjct: 162 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 221

Query: 203 ----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT----MLSGYARNGRMLEARR 254
                S    L     LD L    +    + +  V + +T    +LS YA+ G + +A  
Sbjct: 222 FLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIA 281

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAK 310
           LFD+M +++ V+++A+++ YVQ G+ EEA  +F +M     E +  +  ++I     +A 
Sbjct: 282 LFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAA 341

Query: 311 LDEARRLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG 366
           L   R     +  + +A++T    A+I  Y +  R+D + Q+F+ + + D+V WN MI G
Sbjct: 342 LQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAG 401

Query: 367 YAQCGRMDEAINLFRQMVN----KDIVTWNTMIAGYAQIRQMDDAVKIFEEMG 415
           Y   G   EA  LF +M N     D VT+  +++  +    + +    F  MG
Sbjct: 402 YGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMG 454



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 92/408 (22%), Positives = 167/408 (40%), Gaps = 71/408 (17%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K G +  A ++F  M  +N VT++++I  +    R+  A  LF+ M  + L         
Sbjct: 170 KCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC-------- 221

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACW 143
                              P   + AL   C +    L    +L  LL       D    
Sbjct: 222 ----------------FLSPTSIASALR-ACASLD-HLRMGEQLHALLAKSGVHADLTAG 263

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----E 199
           N++++ YAK G  ++A  L D M  K+ VS+++++SGY +NG    A   F+ M+    E
Sbjct: 264 NSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVE 323

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG----YARNGRMLEARRL 255
            D  +   ++     L  L         +  + + S  ++ +     YA+ GR+  +R++
Sbjct: 324 PDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQV 383

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKL 311
           F+ MP R++V+WN MIA Y   G  +EA  LF+EM       + V++  ++        +
Sbjct: 384 FNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLV 443

Query: 312 DEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
            E +     M +           GY    RM+           H +   +++ +G    G
Sbjct: 444 IEGKHWFHVMGH-----------GYGLTPRME-----------HYICMVDLLSRG----G 477

Query: 372 RMDEAINLFRQM-VNKDIVTWNTMIAGYAQIRQMDDAVKI---FEEMG 415
            +DEA    + M +  D+  W  ++      + +D   K+    +E+G
Sbjct: 478 FLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELG 525



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 118/240 (49%), Gaps = 19/240 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  ++   K+G +++AI +F +M+ K+TV+Y++++S Y +NGR  +A  +F++M   N+ 
Sbjct: 264 NSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVE 323

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWA----LMITCYTRKGELEKAREL 130
               +  S+I    H   ++  R     +    L S       +I  Y + G ++ +R++
Sbjct: 324 PDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQV 383

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGE 186
           F+++P++ D   WN M+AGY   G   EA  L   M +       V++  +LS  + +G 
Sbjct: 384 FNMMPSR-DIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGL 442

Query: 187 MHLASKFFEAMEERDVVS-----WNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSWVTML 240
           +     +F  M     ++     +  M+D       LD A++F Q +P   +V  WV +L
Sbjct: 443 VIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALL 502



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
           T   AL AC+ LA    GR IH  AI +G   DLFV  +L+ MY KC  + +A  +F   
Sbjct: 12  TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 71

Query: 517 DPVDVISWNSLIAGYAINGNATEAIK--LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574
              D+++WN+++AGYA +G    A+   L  +M M  + P+  T + +L   +  G +  
Sbjct: 72  PARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 131

Query: 575 G 575
           G
Sbjct: 132 G 132


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  342 bits (876), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 202/643 (31%), Positives = 318/643 (49%), Gaps = 88/643 (13%)

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV- 233
           N  L    K G +  A + F+ M ++D +SW  ++ GYV  +D   A   F+ +  ++  
Sbjct: 53  NKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGL 112

Query: 234 -------------------VSWVTMLSGYA--------------------RNGRMLEARR 254
                              V++  +L GYA                    +NG++ E RR
Sbjct: 113 RIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRR 172

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAK 310
           +F +MP+RNVV+W A+I   V+ G  +EA   F EM     E +  ++   +        
Sbjct: 173 VFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGA 232

Query: 311 LDEARRLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG 366
           L+  R +  Q   K     +     + + Y +  +++    +F+K+   DVV W  +I  
Sbjct: 233 LNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITT 292

Query: 367 YAQCGRMDEAINLFRQMVNKDI-------------------VTW---------------- 391
             Q G+ + A+  F +M   D+                   + W                
Sbjct: 293 LVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAAS 352

Query: 392 ----NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMT 447
               N+++  YA+  Q+  +  IF EM  RR+ VSW+ +I+G+ Q     +A ++   M 
Sbjct: 353 LSVENSIMTMYAKCGQLTSSSVIFHEM-TRRDIVSWSTIIAGYSQGGHVSEAFELLSWMR 411

Query: 448 QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
            EG K     LA  LSAC ++A L+ G+Q+H   +  G  +   V ++LI MY KCG I+
Sbjct: 412 MEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIE 471

Query: 508 NAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
            A  +F  A+  D++SW ++I GYA +G + E I LFE++   G+ PD VTFIGVLSACS
Sbjct: 472 EASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACS 531

Query: 568 HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIW 627
           H GLVD G + F  M++ Y I P  EHY CMIDLL RAGRL +A  M++ M    +  +W
Sbjct: 532 HAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVW 591

Query: 628 GTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGS 687
            TLL ACR+H +++ GR   E++ +LEP     +  L+N++A  G+W E   +R  M+  
Sbjct: 592 STLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSK 651

Query: 688 GAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQ 730
           G  K+PG SWI+VK+ +  F++GD    +  +I N L  LA++
Sbjct: 652 GVIKEPGWSWIKVKDLVFAFVAGDRSHPQGEDIYNMLDLLASR 694



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 131/576 (22%), Positives = 263/576 (45%), Gaps = 72/576 (12%)

Query: 41  MSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF 100
           +SQ +    N  +    K G + +AR++F++M Q++ +SW ++I+GY++ +   EA  LF
Sbjct: 44  ISQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLF 103

Query: 101 DKM-----FRPDLFSWALM-----ITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGY 150
             M      R D F  +L      +      GEL     +   L N       +A++  Y
Sbjct: 104 KNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNS--VFVGSALLDMY 161

Query: 151 AKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSWN 206
            K G   E +++   MP +N+VSW ++++G  + G    A  +F  M     E D  ++ 
Sbjct: 162 TKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFA 221

Query: 207 LMLDGYVELDDLDSAWKFFQKIPEQ--NVVSWV--TMLSGYARNGRMLEARRLFDQMPIR 262
           + L    +   L+   +   +  ++  +V S+V  T+ + Y + G++     LF++M +R
Sbjct: 222 IALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMR 281

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLL 318
           +VV+W  +I   VQ GQ E A + FI M E     N  ++  +I G   +A+++   +L 
Sbjct: 282 DVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLH 341

Query: 319 DQMPYKNIAA----QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMD 374
             + +  +AA    + ++++ Y +  ++  ++ IF ++   D+V W+ +I GY+Q G + 
Sbjct: 342 ALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVS 401

Query: 375 EAINLFRQM---------------------------------------VNKDIVTWNTMI 395
           EA  L   M                                       +    +  + +I
Sbjct: 402 EAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALI 461

Query: 396 AGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADH 455
             Y +   +++A +IF+   +  + VSW A+I+G+ ++ +  + + +F  + + G + D 
Sbjct: 462 NMYCKCGSIEEASRIFDA-AENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDS 520

Query: 456 STLACALSACAHLAALQLG-RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
            T    LSAC+H   + LG R  + ++ K            +I +  + GR+ +AE +  
Sbjct: 521 VTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMI- 579

Query: 515 DADPV--DVISWNSLIAGYAINGNATEAIKLFEEMV 548
           +A P   D + W++L+    ++G+     +  E ++
Sbjct: 580 EAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERIL 615



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 98/450 (21%), Positives = 194/450 (43%), Gaps = 74/450 (16%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  +  +    K+G++ E  ++F +M  +N V++ ++I+   + G   +A   F +M  
Sbjct: 151 VFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEM-W 209

Query: 75  RNLVSWNSM-------------------------------IAGYLHND---------KVK 94
           R+ V ++S                                ++ ++ N          K++
Sbjct: 210 RSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLE 269

Query: 95  EARELFDKMFRPDLFSWALMITCYTRKGELEKARELF------DLLPNKEDTACWNAMVA 148
               LF+KM   D+ SW  +IT   + G+ E A + F      D+ PN+   A   A+++
Sbjct: 270 YGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFA---AVIS 326

Query: 149 GYAKIGNYNEAKKL----LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS 204
           G A +      ++L    L    + ++   NS+++ Y K G++  +S  F  M  RD+VS
Sbjct: 327 GCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVS 386

Query: 205 WNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSGYA-----RNGRMLEARRL 255
           W+ ++ GY +   +  A++    +    P+    +  ++LS         +G+ L A  L
Sbjct: 387 WSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVL 446

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR 315
              +     +  +A+I  Y + G IEEA+R+F      + VSWT MI+GY       E  
Sbjct: 447 SIGLE-HTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVI 505

Query: 316 RLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFDKIGTHDVVC-----WNVMIKG 366
            L +++P   +   +     ++S       +D   + F+ +     +      +  MI  
Sbjct: 506 DLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDL 565

Query: 367 YAQCGRMDEAINLFRQM-VNKDIVTWNTMI 395
             + GR+ +A ++   M  ++D V W+T++
Sbjct: 566 LCRAGRLSDAEHMIEAMPFHRDDVVWSTLL 595



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 132/305 (43%), Gaps = 35/305 (11%)

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD 387
           A T  I   V  +  D  +Q    I   D+   N  +K   + G +  A  +F +M  KD
Sbjct: 20  ASTECIDLQVLERSNDNLSQNIHFISQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKD 79

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMT 447
            ++W T+I+GY       +A+ +F+ M                                 
Sbjct: 80  EISWTTLISGYVNANDSSEALLLFKNM-------------------------------RV 108

Query: 448 QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
           + G + D   L+ A  AC   + +  G  +H  A+K+G VN +FVG++L+ MY K G+I 
Sbjct: 109 ESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIF 168

Query: 508 NAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
               +F +    +V+SW ++I G    G   EA+  F EM    V  D  TF   L AC+
Sbjct: 169 EGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACA 228

Query: 568 HVGLVDGGLKLF-ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGI 626
             G ++ G ++  + M + + +   V +   +  + ++ G+L+    + + M ++     
Sbjct: 229 DSGALNYGREIHAQAMKKGFDVSSFVAN--TLATMYNKCGKLEYGLTLFEKMSMRDVVS- 285

Query: 627 WGTLL 631
           W T++
Sbjct: 286 WTTII 290



 Score = 46.6 bits (109), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 11/114 (9%)

Query: 459 ACALSACAHLAALQ-----LGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
           A A + C  L  L+     L + IH ++       DL   N  +    K G + NA  +F
Sbjct: 18  AVASTECIDLQVLERSNDNLSQNIHFIS-----QTDLPESNKQLKELVKTGHLGNARRMF 72

Query: 514 KDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME-GVAPDPVTFIGVLSAC 566
                 D ISW +LI+GY    +++EA+ LF+ M +E G+  DP        AC
Sbjct: 73  DKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKAC 126


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  341 bits (875), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 223/669 (33%), Positives = 345/669 (51%), Gaps = 93/669 (13%)

Query: 137 KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG----------- 185
           + DT   N ++   +K    + A+ + D MP KN+++W+SM+S Y++ G           
Sbjct: 81  QSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVD 140

Query: 186 ----------EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
                     E  LAS    A  +  VV     L G+V     D           Q+V  
Sbjct: 141 LQRKSGEHPNEFVLAS-VIRACTQLGVVEKGAQLHGFVVRSGFD-----------QDVYV 188

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----- 290
             +++  Y++NG + EAR +FDQ+  +  V W  +IA Y + G+   +  LF +M     
Sbjct: 189 GTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNV 248

Query: 291 -PERNPVSWT---------------------------------TMIDGYVRIAKLDEARR 316
            P+R  VS                                    +ID Y +  ++   R+
Sbjct: 249 VPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRK 308

Query: 317 LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF---DKIG--THDVVCWNVMIKGYAQCG 371
           L DQM  KNI + T MISGY+QN    EA ++F   +++G       C +V+      CG
Sbjct: 309 LFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVL----TSCG 364

Query: 372 RMDEAINLFRQM--------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
              EA+   RQ+        +  D    N +I  YA+   + DA K+F+ M ++ N +S+
Sbjct: 365 S-REALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQ-NVISY 422

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
           NA+I G+   E   +AL++F  M    +K +  T A  ++A ++LA+L+ G+Q H+  +K
Sbjct: 423 NAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVK 482

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
            G     FV N+L+ MYAKCG I+ A  +F  +   DV+ WNS+I+ +A +G A EA+ +
Sbjct: 483 MGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGM 542

Query: 544 FEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLS 603
           F EM+ EG+ P+ VTF+ VLSACSH G V+ GL  F  M   + I+P  EHYAC++ LL 
Sbjct: 543 FREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPG-FGIKPGTEHYACVVSLLG 601

Query: 604 RAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYAL 663
           R+G+L EA E ++ M I+P A +W +LL ACR+  N++LG+ A E     +P+ +  Y L
Sbjct: 602 RSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYIL 661

Query: 664 LSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNT 723
           LSN+ A  G W +V+KVR  M+ S   K+PG SWIEV N+++ F++ D    R A+I + 
Sbjct: 662 LSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVFIARDTTH-READIGSV 720

Query: 724 LKTLAAQIR 732
           L  L   I+
Sbjct: 721 LDILIQHIK 729



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 147/621 (23%), Positives = 265/621 (42%), Gaps = 144/621 (23%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           Q +T   N +I+  +K+ RV++AR +F++MP +NL++W+SM++ Y      +EA  +F  
Sbjct: 81  QSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVD 140

Query: 103 MFR-----PDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIG 154
           + R     P+ F  A +I   T+ G +EK  +L   +      +D     +++  Y+K G
Sbjct: 141 LQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNG 200

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS---------- 204
           N  EA+ + D +  K  V+W ++++GYTK G   ++ + F  M E +VV           
Sbjct: 201 NIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLS 260

Query: 205 -----------------------------WNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
                                         N+++D Y + + + +  K F ++  +N++S
Sbjct: 261 ACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIIS 320

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIRNVVAW---------------------------- 267
           W TM+SGY +N    EA +LF +M   N + W                            
Sbjct: 321 WTTMISGYMQNSFDWEAMKLFGEM---NRLGWKPDGFACTSVLTSCGSREALEQGRQVHA 377

Query: 268 --------------NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDE 313
                         N +I  Y +   + +A ++F  M E+N +S+  MI+GY    KL E
Sbjct: 378 YTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSE 437

Query: 314 ARRLLDQMPYK----NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV----VCWNVMIK 365
           A  L  +M  +    N     A+I+       +    Q  +++    +       N ++ 
Sbjct: 438 ALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVD 497

Query: 366 GYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
            YA+CG ++EA  +F   + +D+V WN+MI+ +AQ  + ++A+ +F EM K         
Sbjct: 498 MYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMK--------- 548

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG----RQIHHLA 481
                                  EG + ++ T    LSAC+H   ++ G      +    
Sbjct: 549 -----------------------EGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPGFG 585

Query: 482 IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVD--VISWNSLIAGYAINGNATE 539
           IK G  +   V    +++  + G++  A+  F +  P++   I W SL++   I GN  E
Sbjct: 586 IKPGTEHYACV----VSLLGRSGKLFEAK-EFIEKMPIEPAAIVWRSLLSACRIAGN-VE 639

Query: 540 AIKLFEEMVMEGVAPDPVTFI 560
             K   EM +     D  ++I
Sbjct: 640 LGKYAAEMAISTDPKDSGSYI 660



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 156/314 (49%), Gaps = 20/314 (6%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           + GR   A  I + +     V  N +I  YAK+  + DA+K+F+ M ++N++S+N+MI G
Sbjct: 370 EQGRQVHAYTIKANLESDEFVK-NGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEG 428

Query: 87  YLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTAC 142
           Y   +K+ EA ELF +M     +P+ F++A +IT  +    L   ++  + L       C
Sbjct: 429 YSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFC 488

Query: 143 ---WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE 199
               NA+V  YAK G+  EA+K+ ++   +++V WNSM+S + ++GE   A   F  M +
Sbjct: 489 PFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMK 548

Query: 200 RDV----VSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLE 251
             +    V++  +L        ++     F  +P    +     +  ++S   R+G++ E
Sbjct: 549 EGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPGFGIKPGTEHYACVVSLLGRSGKLFE 608

Query: 252 ARRLFDQMPIRN-VVAWNAMIAAYVQRGQIE---EAARLFIEMPERNPVSWTTMIDGYVR 307
           A+   ++MPI    + W ++++A    G +E    AA + I    ++  S+  + + +  
Sbjct: 609 AKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFAS 668

Query: 308 IAKLDEARRLLDQM 321
                + +++ D+M
Sbjct: 669 KGMWADVKKVRDRM 682



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 8/172 (4%)

Query: 477 IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGN 536
           IH   I SG  +D F+ N LI + +K  R+ NA ++F      ++I+W+S+++ Y+  G 
Sbjct: 71  IHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGY 130

Query: 537 ATEAIKLFEEMVME-GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHY 595
           + EA+ +F ++  + G  P+      V+ AC+ +G+V+ G +L   +      +  V   
Sbjct: 131 SEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVR-SGFDQDVYVG 189

Query: 596 ACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAV 647
             +ID  S+ G ++EA  +V     +  A  W T++         K GR AV
Sbjct: 190 TSLIDFYSKNGNIEEA-RLVFDQLSEKTAVTWTTIIAG-----YTKCGRSAV 235


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  341 bits (875), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 214/646 (33%), Positives = 340/646 (52%), Gaps = 63/646 (9%)

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EER- 200
           +V  YA +G+ + ++   D +P K++ +WNSM+S Y  NG  H A   F  +    E R 
Sbjct: 157 LVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRP 216

Query: 201 DVVSWNLMLDGYVELDDLD--SAWKFFQKIPEQ-NVVSWVTMLSGYARNGRMLEARRLFD 257
           D  ++  +L     L D      W F  K+  Q NV    +++  Y+R G    AR LFD
Sbjct: 217 DFYTFPPVLKACGTLVDGRRIHCWAF--KLGFQWNVFVAASLIHMYSRFGFTGIARSLFD 274

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM-------------------PERNPVSW 298
            MP R++ +WNAMI+  +Q G   +A  +  EM                   P+   +S 
Sbjct: 275 DMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDIST 334

Query: 299 TTMIDGYV--------------------RIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
             +I  YV                    +   L++AR+   QM   ++ +  ++I+ Y Q
Sbjct: 335 AMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQ 394

Query: 339 NKRMDEANQIFDKIGTH-------DVVCWNVMIKGYAQC--GRMDEAINLFRQMVNKDIV 389
           N     A+  F K+  +        +V    ++     C   R      + R  + +D+V
Sbjct: 395 NDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVV 454

Query: 390 TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
             N ++  YA++  +D A K+FE +   ++ +SWN LI+G+ QN    +A++++ +M +E
Sbjct: 455 IGNAVVDMYAKLGLLDSAHKVFEII-LVKDVISWNTLITGYAQNGLASEAIEVYKMM-EE 512

Query: 450 GKK--ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
            K+   +  T    L A AH+ ALQ G +IH   IK+    D+FV   LI +Y KCGR+ 
Sbjct: 513 CKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLV 572

Query: 508 NAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
           +A  LF        ++WN++I+ + I+G+A + +KLF EM+ EGV PD VTF+ +LSACS
Sbjct: 573 DAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACS 632

Query: 568 HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIW 627
           H G V+ G   F  M E Y I+P ++HY CM+DLL RAG L+ A+  +K M ++P+A IW
Sbjct: 633 HSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIW 691

Query: 628 GTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGS 687
           G LLGACR+H NI+LG+ A ++L E++ +    Y LLSN++A  G+W+ V+KVR      
Sbjct: 692 GALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARER 751

Query: 688 GAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           G +K PG S IEV  ++  F +G+    +  EI   L+ L A++++
Sbjct: 752 GLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKS 797



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 137/498 (27%), Positives = 243/498 (48%), Gaps = 58/498 (11%)

Query: 231 QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
           Q++     +++ YA  G +  +R  FDQ+P ++V  WN+MI+AYV  G   EA   F ++
Sbjct: 149 QSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQL 208

Query: 291 ---PERNPVSWT---------TMIDG-------------------------YVRIAKLDE 313
               E  P  +T         T++DG                         Y R      
Sbjct: 209 LLVSEIRPDFYTFPPVLKACGTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGI 268

Query: 314 ARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV----VCWNVMIKGYAQ 369
           AR L D MP++++ +  AMISG +QN    +A  + D++    +    V    ++    Q
Sbjct: 269 ARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQ 328

Query: 370 CGRMDEA--INLF--RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
            G +  A  I+L+  +  +  D+   N +I  YA+   ++DA K F++M    + VSWN+
Sbjct: 329 LGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFI-TDVVSWNS 387

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485
           +I+ + QN+  + A   FV M   G + D  TL    S  A     +  R +H   ++ G
Sbjct: 388 IIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRG 447

Query: 486 YV-NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLF 544
           ++  D+ +GN+++ MYAK G + +A  +F+     DVISWN+LI GYA NG A+EAI+++
Sbjct: 448 WLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVY 507

Query: 545 EEM-VMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF-ECMTEVYAIEPLVEHYACMIDLL 602
           + M   + + P+  T++ +L A +HVG +  G+++    +     ++  V    C+ID+ 
Sbjct: 508 KMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVA--TCLIDVY 565

Query: 603 SRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNI-KLGRIAVEKLSE-LEPQKTSC 660
            + GRL +A  +   +  + ++  W  ++    +H +  K  ++  E L E ++P   + 
Sbjct: 566 GKCGRLVDAMSLFYQVP-QESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTF 624

Query: 661 YALLS----NMHAEAGRW 674
            +LLS    +   E G+W
Sbjct: 625 VSLLSACSHSGFVEEGKW 642



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 143/559 (25%), Positives = 256/559 (45%), Gaps = 86/559 (15%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF-----RP 106
           +++ YA  G V+ +R  F+Q+PQ+++ +WNSMI+ Y+HN    EA   F ++      RP
Sbjct: 157 LVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRP 216

Query: 107 DLFSWALMI-TCYTRKGELEKAREL----FDLLPNKEDTACWNAMVAG-----YAKIGNY 156
           D +++  ++  C    G L   R +    F L         WN  VA      Y++ G  
Sbjct: 217 DFYTFPPVLKAC----GTLVDGRRIHCWAFKL------GFQWNVFVAASLIHMYSRFGFT 266

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGY 212
             A+ L D MP +++ SWN+M+SG  +NG    A    + M     + + V+   +L   
Sbjct: 267 GIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVC 326

Query: 213 VELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN 268
            +L D+ +A      +     E ++     +++ YA+ G + +AR+ F QM I +VV+WN
Sbjct: 327 PQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWN 386

Query: 269 AMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
           ++IAAY Q      A   F++M     + + ++  ++     +      +R +   +  +
Sbjct: 387 SIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRR 446

Query: 325 -----NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
                ++    A++  Y +   +D A+++F+ I   DV+ WN +I GYAQ G   EAI +
Sbjct: 447 GWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEV 506

Query: 380 FRQMVN-KDIV----TWNTMIAGYAQIRQMD----------------------------- 405
           ++ M   K+I+    TW +++  YA +  +                              
Sbjct: 507 YKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYG 566

Query: 406 ------DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
                 DA+ +F ++  + ++V+WNA+IS    +      LK+F  M  EG K DH T  
Sbjct: 567 KCGRLVDAMSLFYQV-PQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFV 625

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
             LSAC+H   ++ G+    L  + G    L     ++ +  + G ++ A    KD  P+
Sbjct: 626 SLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDM-PL 684

Query: 520 --DVISWNSLIAGYAINGN 536
             D   W +L+    I+GN
Sbjct: 685 QPDASIWGALLGACRIHGN 703



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 140/258 (54%), Gaps = 17/258 (6%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           N++I+ YAK G + DARK F+QM   ++VSWNS+IA Y  ND    A   F KM    F+
Sbjct: 355 NALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQ 414

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNK----EDTACWNAMVAGYAKIGNYNEAKK 161
           PDL +   + +   +  + + +R +   +  +    ED    NA+V  YAK+G  + A K
Sbjct: 415 PDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHK 474

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE-RDVV----SWNLMLDGYVELD 216
           + + +  K+++SWN++++GY +NG    A + ++ MEE ++++    +W  +L  Y  + 
Sbjct: 475 VFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVG 534

Query: 217 DLDSAWKFFQKIPEQN----VVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
            L    +   ++ + N    V     ++  Y + GR+++A  LF Q+P  + V WNA+I+
Sbjct: 535 ALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIIS 594

Query: 273 AYVQRGQIEEAARLFIEM 290
            +   G  E+  +LF EM
Sbjct: 595 CHGIHGHAEKTLKLFGEM 612



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 117/461 (25%), Positives = 200/461 (43%), Gaps = 88/461 (19%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           Q N     S+I  Y++ G    AR LF+ MP R++ SWN+MI+G + N    +A ++ D+
Sbjct: 247 QWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDE 306

Query: 103 M-----------------FRPDL--FSWALMITCYTRKGELEKARELFDLLPNKEDTACW 143
           M                   P L   S A++I  Y  K  LE     FDL  +       
Sbjct: 307 MRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLE-----FDLFVS------- 354

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----- 198
           NA++  YAK GN  +A+K    M   ++VSWNS+++ Y +N +   A  FF  M+     
Sbjct: 355 NALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQ 414

Query: 199 -----------------------------------ERDVVSWNLMLDGYVELDDLDSAWK 223
                                                DVV  N ++D Y +L  LDSA K
Sbjct: 415 PDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHK 474

Query: 224 FFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP-----IRNVVAWNAMIAAYVQRG 278
            F+ I  ++V+SW T+++GYA+NG   EA  ++  M      I N   W +++ AY   G
Sbjct: 475 VFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVG 534

Query: 279 QIEEAARLFIEMPERN----PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMIS 334
            +++  R+   + + N        T +ID Y +  +L +A  L  Q+P ++     A+IS
Sbjct: 535 ALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIIS 594

Query: 335 GYVQNKRMDEANQIF----DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNK 386
            +  +   ++  ++F    D+    D V +  ++   +  G ++E    FR M    +  
Sbjct: 595 CHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKP 654

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
            +  +  M+    +   ++ A    ++M  + +   W AL+
Sbjct: 655 SLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALL 695



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 142/308 (46%), Gaps = 27/308 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ---- 74
           N  +    K G ++ A K+F  +  K+ +++N++I+ YA+NG  ++A ++++ M +    
Sbjct: 457 NAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEI 516

Query: 75  -RNLVSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKARE 129
             N  +W S++  Y H   +++   +  ++ +     D+F    +I  Y + G L  A  
Sbjct: 517 IPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMS 576

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNG 185
           LF  +P +E +  WNA+++ +   G+  +  KL   M  + +    V++ S+LS  + +G
Sbjct: 577 LFYQVP-QESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSG 635

Query: 186 EMHLASKFFEAMEERDVVS----WNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-WVTML 240
            +      F  M+E  +      +  M+D       L+ A+ F + +P Q   S W  +L
Sbjct: 636 FVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALL 695

Query: 241 SGYARNGRM----LEARRLFDQMPIRNVVAWNAMIAAYVQRGQ---IEEAARLFIEMPER 293
                +G +      + RLF ++  +NV  +  +   Y   G+   +++   L  E   +
Sbjct: 696 GACRIHGNIELGKFASDRLF-EVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLK 754

Query: 294 NPVSWTTM 301
               W+T+
Sbjct: 755 KTPGWSTI 762



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 11/197 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF     I   GK GR+ +A+ +F Q+ Q+++VT+N++IS +  +G      KLF +M  
Sbjct: 555 VFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLD 614

Query: 75  RNL----VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEK 126
             +    V++ S+++   H+  V+E +  F  M     +P L  +  M+    R G LE 
Sbjct: 615 EGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEM 674

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM---PSKNIVSWNSMLSGYTK 183
           A      +P + D + W A++      GN    K   D +    SKN+  +  + + Y  
Sbjct: 675 AYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYAN 734

Query: 184 NGEMHLASKFFEAMEER 200
            G+     K      ER
Sbjct: 735 VGKWEGVDKVRSLARER 751



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 6/162 (3%)

Query: 473 LGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYA 532
             + +H L + +G V  +F+   L+ +YA  G +  +   F      DV +WNS+I+ Y 
Sbjct: 134 FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYV 193

Query: 533 INGNATEAIKLFEEMVM-EGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL 591
            NG+  EAI  F ++++   + PD  TF  VL AC    LVDG  +   C       +  
Sbjct: 194 HNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACG--TLVDG--RRIHCWAFKLGFQWN 249

Query: 592 VEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
           V   A +I + SR G    A  +   M  + + G W  ++  
Sbjct: 250 VFVAASLIHMYSRFGFTGIARSLFDDMPFR-DMGSWNAMISG 290


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  341 bits (875), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 215/756 (28%), Positives = 359/756 (47%), Gaps = 128/756 (16%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM-------F 104
           ++  Y + GRV+DAR+LF  MP R + SWN+++  YL +    EA  ++  M        
Sbjct: 101 LVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGS 160

Query: 105 RPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKK 161
            PD  + A ++     +G+     E+  L       + T   NA++  YAK G  + A +
Sbjct: 161 APDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALR 220

Query: 162 LLDAM--PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE-------------------- 199
           + + +   ++++ SWNS++SG  +NG    A   F  M+                     
Sbjct: 221 VFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAEL 280

Query: 200 ------RDV------------VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
                 R++            +  N +L  Y +   +DSA + F +I E++ +SW +MLS
Sbjct: 281 GLLSLGRELHAALLKCGSELNIQCNALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLS 340

Query: 242 GYARNGRMLEARRLFDQM------PIRNVV------------------------------ 265
            Y +N    EA   F +M      P    V                              
Sbjct: 341 CYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLHT 400

Query: 266 ---AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
                N ++  Y++ G IE +A++F  M  R+ +SWTT++  + + ++  EA  ++ ++ 
Sbjct: 401 DLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQ 460

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKI-------GTHDVVCWNVMIKGYAQCGRMDE 375
            + I   + MI   ++     ++  +  ++       G  D++  N +I  Y +CG  D 
Sbjct: 461 KEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGLLDLILENRLIDIYGECGEFDH 520

Query: 376 AINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEF 435
           ++NLF+++  KDIV+W +MI       +++ AV +F EM K                   
Sbjct: 521 SLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQK------------------- 561

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS 495
                           + D   L   L A A L++L  G+Q+H   I+  +  +  V +S
Sbjct: 562 -------------ANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSS 608

Query: 496 LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555
           L+ MY+ CG +  A  +F+ A   DV+ W ++I    ++G+  +AI LF+ M+  G+ PD
Sbjct: 609 LVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPD 668

Query: 556 PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV 615
            V+F+ +L ACSH  LV+ G    + M   Y ++P  EHYAC++D+L R+G+ +EA+E +
Sbjct: 669 HVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFI 728

Query: 616 KGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWD 675
           K M + P + +W  LLGACR+H+N  L  +A  KL ELEP     Y L+SN+ AE G+W+
Sbjct: 729 KTMPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAEMGKWN 788

Query: 676 EVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD 711
             ++ R  M   G +K P CSWIE+ N IHTF SGD
Sbjct: 789 NAKETRTRMAERGLRKNPACSWIEIGNNIHTFTSGD 824



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 175/353 (49%), Gaps = 26/353 (7%)

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI------ 352
           T ++  Y R  ++D+ARRL + MP + + +  A++  Y+ +    EA +++  +      
Sbjct: 99  TKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAP 158

Query: 353 GTHDVVCWNVMI------KGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDD 406
           G+    C    +      +G  +CG     + + +  ++K  +  N +I  YA+   +D 
Sbjct: 159 GSAPDGCTLASVLKACGAEGDGRCGGEVHGLAV-KVGLDKSTLVANALIGMYAKCGLLDS 217

Query: 407 AVKIFEEMGK-RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
           A+++FE + +  R+  SWN+++SG +QN   L+AL +F  M   G   +  T    L  C
Sbjct: 218 ALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVC 277

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
           A L  L LGR++H   +K G   ++   N+L+ MYAK GR+ +A  +F      D ISWN
Sbjct: 278 AELGLLSLGRELHAALLKCGSELNIQC-NALLVMYAKYGRVDSALRVFGQIAEKDYISWN 336

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
           S+++ Y  N    EAI  F EM+  G  PD    + + SA  H+  ++ G +        
Sbjct: 337 SMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREF-----HA 391

Query: 586 YAIEPLVEHYA----CMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGAC 634
           YAI+  +         ++D+  + G ++ + ++ + M I+ +   W T+L AC
Sbjct: 392 YAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHIS-WTTIL-AC 442



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 102/476 (21%), Positives = 199/476 (41%), Gaps = 69/476 (14%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQ--KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRN 76
           N  I    K G ++ A+++F  + Q  ++  ++NS++S   +NGR  +A  LF  M    
Sbjct: 203 NALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAG 262

Query: 77  L--------------------------------------VSWNSMIAGYLHNDKVKEARE 98
                                                  +  N+++  Y    +V  A  
Sbjct: 263 FPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQCNALLVMYAKYGRVDSALR 322

Query: 99  LFDKMFRPDLFSWALMITCYTRKGELEKARELF-DLLPN--KEDTACWNAMVAGYAKIGN 155
           +F ++   D  SW  M++CY +     +A + F ++L +  + D AC  ++ +    +  
Sbjct: 323 VFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSR 382

Query: 156 YNEAKKL----LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
            N  ++     +      ++   N+++  Y K G +  ++K FE+M  RD +SW  +L  
Sbjct: 383 LNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILAC 442

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM---PIRN----V 264
           + +      A +   ++ ++ ++    M+         L++  L  Q+    IRN    +
Sbjct: 443 FAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGLLDL 502

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
           +  N +I  Y + G+ + +  LF  + +++ VSWT+MI+      +L+ A  L  +M   
Sbjct: 503 ILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKA 562

Query: 325 NIAAQT-AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG---------YAQCGRMD 374
           NI   + A++S  V    +    +     G   ++  N  I+G         Y+ CG M+
Sbjct: 563 NIQPDSVALVSILVAIAGLSSLTKGKQVHGF--LIRRNFPIEGPVVSSLVDMYSGCGSMN 620

Query: 375 EAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALI 427
            AI +F +   KD+V W  MI           A+ +F+ M   G   + VS+ AL+
Sbjct: 621 YAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALL 676



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 24/176 (13%)

Query: 474 GRQIHHLAIKSGYVN---DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
           GRQ+H  A+ +G +N   D F+   L+ MY +CGR+ +A  LF       V SWN+L+  
Sbjct: 76  GRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGA 135

Query: 531 YAINGNATEAIKLFEEM---VMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYA 587
           Y  +G+A EA++++  M      G APD  T   VL AC   G  DG      C  EV+ 
Sbjct: 136 YLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEG--DG-----RCGGEVHG 188

Query: 588 I--------EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKP-NAGIWGTLLGAC 634
           +          LV +   +I + ++ G LD A  + + ++    +   W +++  C
Sbjct: 189 LAVKVGLDKSTLVAN--ALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGC 242



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 71/335 (21%), Positives = 140/335 (41%), Gaps = 53/335 (15%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           +N+ I   G+ G  + ++ +F ++ +K+ V++ SMI+    NGR+N A  LF +M + N+
Sbjct: 505 ENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANI 564

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
                                      +PD  +   ++        L K +++   L  +
Sbjct: 565 ---------------------------QPDSVALVSILVAIAGLSSLTKGKQVHGFLIRR 597

Query: 138 E---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
               +    +++V  Y+  G+ N A ++ +    K++V W +M++    +G    A   F
Sbjct: 598 NFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLF 657

Query: 195 EAMEER----DVVSW----------NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
           + M +     D VS+           L+ +G   LD + S ++     P Q   + V  +
Sbjct: 658 KRMLQTGLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRL---KPWQEHYACVVDI 714

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVA-WNAMIAA-YVQR--GQIEEAARLFIEMPERNPV 296
            G  R+G+  EA      MP+    A W A++ A  V R  G    AA   +E+   NP 
Sbjct: 715 LG--RSGQTEEAYEFIKTMPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEPDNPG 772

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
           ++  + + +  + K + A+    +M  + +    A
Sbjct: 773 NYILVSNVFAEMGKWNNAKETRTRMAERGLRKNPA 807


>gi|345505232|gb|AEN99840.1| chlororespiratory reduction 4, partial [Olimarabidopsis pumila]
          Length = 579

 Score =  341 bits (875), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 175/461 (37%), Positives = 275/461 (59%), Gaps = 11/461 (2%)

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP--YKN 325
           N +I  Y++ G +  A ++F  MP+R+ VS+ +MIDGYV+   ++ A  L D MP   KN
Sbjct: 126 NCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSIESASELFDLMPREMKN 185

Query: 326 IAAQTAMISGYVQNKR-MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
           + +  ++ISGY Q    +D A+++F ++   D++ WN MI GY + GR+++A +LF  + 
Sbjct: 186 LISWNSLISGYAQTSEGVDIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDMVP 245

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
            +D+VTW TMI GYA++  +  A  +F++M   R+ V++N++++G++QN FH++AL+IF 
Sbjct: 246 RRDVVTWATMIDGYAKLGFVHQAKTLFDQM-PHRDVVAYNSMMAGYVQNRFHMEALEIFS 304

Query: 445 LMTQEGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
            M +E     D +TL   LSA A L  L     +H   ++  ++    +G +LI MY+KC
Sbjct: 305 DMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFLLGGKLGVALIDMYSKC 364

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
           G IQ+A L+F+  +   +  WN++I G AI+G    A  +  ++    + PD +TF+GVL
Sbjct: 365 GSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVL 424

Query: 564 SACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPN 623
           +ACSH GLV  GL  FE M   + IEP ++HY CM+D+LSR+G ++ A  +++ M I+PN
Sbjct: 425 NACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPN 484

Query: 624 AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVS 683
             IW T L AC  H+  + G +  + L        S Y LLSNM+A  G W +V +VR  
Sbjct: 485 DVIWRTFLTACSHHKEFETGELVAKHLILQADYNPSSYVLLSNMYASFGMWKDVRRVRTM 544

Query: 684 MEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTL 724
           M+    +K PGCSWIE+   +H F           E+ NTL
Sbjct: 545 MKERKIEKIPGCSWIELDGXVHEFF------VDGIEVSNTL 579



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 143/468 (30%), Positives = 225/468 (48%), Gaps = 97/468 (20%)

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           DLF    +I  Y + G L  AR++FD +P + D+  +N+M+ GY K G+   A +L D M
Sbjct: 121 DLFLQNCLIGLYLKCGCLGFARQIFDRMPQR-DSVSYNSMIDGYVKCGSIESASELFDLM 179

Query: 167 PS--KNIVSWNSMLSGYTKNGE-MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWK 223
           P   KN++SWNS++SGY +  E + +ASK F  M E+D++SWN M+DGYV+   ++ A  
Sbjct: 180 PREMKNLISWNSLISGYAQTSEGVDIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKD 239

Query: 224 FFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEA 283
            F  +P ++VV+W TM+ GYA+ G + +A+ LFDQMP R+VVA+N+M+A YVQ     EA
Sbjct: 240 LFDMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVAYNSMMAGYVQNRFHMEA 299

Query: 284 ARLFIEMPERNPVS--WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKR 341
             +F +M + + +S   TT++     IA+L    + +D   Y  I  +  ++ G      
Sbjct: 300 LEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLY--IVEKQFLLGG------ 351

Query: 342 MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQI 401
                    K+G         +I  Y++CG +  A+ +F  + NK I  WN MI G A  
Sbjct: 352 ---------KLGV-------ALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLA-- 393

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
                                    I G  ++ F      + + + +   K D  T    
Sbjct: 394 -------------------------IHGLGESAF-----DMLLQIERRSIKPDDITFVGV 423

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC-GRIQNAELLFKDADPVD 520
           L+AC+H                SG V +  +   L+    K   R+Q+   +      VD
Sbjct: 424 LNACSH----------------SGLVKEGLLCFELMRRKHKIEPRLQHYGCM------VD 461

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
           ++S          +G+   A  L EEM +E   P+ V +   L+ACSH
Sbjct: 462 ILSR---------SGSIELAKNLIEEMPIE---PNDVIWRTFLTACSH 497



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 100/294 (34%), Positives = 163/294 (55%), Gaps = 13/294 (4%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F QN  I    K G +  A +IF +M Q+++V+YNSMI  Y K G +  A +LF+ M
Sbjct: 120 SDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSIESASELFDLM 179

Query: 73  PQ--RNLVSWNSMIAGYLH-NDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARE 129
           P+  +NL+SWNS+I+GY   ++ V  A +LF +M   DL SW  MI  Y + G +E A++
Sbjct: 180 PREMKNLISWNSLISGYAQTSEGVDIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKD 239

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           LFD++P + D   W  M+ GYAK+G  ++AK L D MP +++V++NSM++GY +N     
Sbjct: 240 LFDMVP-RRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVAYNSMMAGYVQNRFHME 298

Query: 190 ASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV----SWVTML 240
           A + F  ME+      D  +  ++L    +L  L  A      I E+  +      V ++
Sbjct: 299 ALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFLLGGKLGVALI 358

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
             Y++ G +  A  +F+ +  +++  WNAMI      G  E A  + +++  R+
Sbjct: 359 DMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRS 412



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 108/378 (28%), Positives = 189/378 (50%), Gaps = 23/378 (6%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR--PD 107
           N +I  Y K G +  AR++F++MPQR+ VS+NSMI GY+    ++ A ELFD M R   +
Sbjct: 126 NCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSIESASELFDLMPREMKN 185

Query: 108 LFSWALMITCYTRKGE-LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           L SW  +I+ Y +  E ++ A +LF  +P K D   WN+M+ GY K G   +AK L D +
Sbjct: 186 LISWNSLISGYAQTSEGVDIASKLFAEMPEK-DLISWNSMIDGYVKHGRIEDAKDLFDMV 244

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
           P +++V+W +M+ GY K G +H A   F+ M  RDVV++N M+ GYV+      A + F 
Sbjct: 245 PRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVAYNSMMAGYVQNRFHMEALEIFS 304

Query: 227 KIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN----AMIAAYVQR 277
            + +++ +S      V +LS  A+ GR+ +A  +   +  +  +       A+I  Y + 
Sbjct: 305 DMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFLLGGKLGVALIDMYSKC 364

Query: 278 GQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYV 337
           G I+ A  +F  +  ++   W  MI G       + A  +L Q+  ++I        G +
Sbjct: 365 GSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVL 424

Query: 338 ----QNKRMDEANQIFDKIGTHDVV-----CWNVMIKGYAQCGRMDEAINLFRQM-VNKD 387
                +  + E    F+ +     +      +  M+   ++ G ++ A NL  +M +  +
Sbjct: 425 NACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPN 484

Query: 388 IVTWNTMIAGYAQIRQMD 405
            V W T +   +  ++ +
Sbjct: 485 DVIWRTFLTACSHHKEFE 502



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 156/329 (47%), Gaps = 21/329 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I    K GR+E+A  +F  + +++ VT+ +MI  YAK G V+ A+ LF+QMP R++V
Sbjct: 222 NSMIDGYVKHGRIEDAKDLFDMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVV 281

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFDL 133
           ++NSM+AGY+ N    EA E+F  M       PD  +  ++++   + G L KA ++   
Sbjct: 282 AYNSMMAGYVQNRFHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLY 341

Query: 134 LPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           +  K+         A++  Y+K G+   A  + + + +K+I  WN+M+ G   +G    A
Sbjct: 342 IVEKQFLLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESA 401

Query: 191 SKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLS 241
                 +E R    D +++  +L+       +      F+ +  ++ +      +  M+ 
Sbjct: 402 FDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVD 461

Query: 242 GYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEA---ARLFIEMPERNPVS 297
             +R+G +  A+ L ++MPI  N V W   + A     + E     A+  I   + NP S
Sbjct: 462 ILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQADYNPSS 521

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
           +  + + Y       + RR+   M  + I
Sbjct: 522 YVLLSNMYASFGMWKDVRRVRTMMKERKI 550



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 149/290 (51%), Gaps = 18/290 (6%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHN 90
           V+ A K+F++M +K+ +++NSMI  Y K+GR+ DA+ LF+ +P+R++V+W +MI GY   
Sbjct: 203 VDIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDMVPRRDVVTWATMIDGYAKL 262

Query: 91  DKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE----DTACWNAM 146
             V +A+ LFD+M   D+ ++  M+  Y +     +A E+F  +  +     D      +
Sbjct: 263 GFVHQAKTLFDQMPHRDVVAYNSMMAGYVQNRFHMEALEIFSDMEKESHLSPDETTLVIV 322

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWN----SMLSGYTKNGEMHLASKFFEAMEERDV 202
           ++  A++G  ++A  +   +  K  +       +++  Y+K G +  A   FE +E + +
Sbjct: 323 LSAIAQLGRLSKAMDMHLYIVEKQFLLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSI 382

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFDQ 258
             WN M+ G       +SA+    +I  +++    +++V +L+  + +G + E    F+ 
Sbjct: 383 DHWNAMIGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFEL 442

Query: 259 MPIRNVVA-----WNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMI 302
           M  ++ +      +  M+    + G IE A  L  EMP E N V W T +
Sbjct: 443 MRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFL 492



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 107/221 (48%), Gaps = 15/221 (6%)

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
           G+  +   WNA+I           AL +F LM + G   D  +L+  + AC+ L  ++ G
Sbjct: 47  GEVEDPYLWNAMIKSHSHGTDPRRALLLFCLMLEIGVPVDKFSLSLVMKACSRLGFVKGG 106

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
            QIH    K+G  +DLF+ N LI +Y KCG +  A  +F      D +S+NS+I GY   
Sbjct: 107 LQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKC 166

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL-VDGGLKLFECMTEVYAIEPLVE 593
           G+   A +LF+ M  E    + +++  ++S  +     VD   KLF  M E   I     
Sbjct: 167 GSIESASELFDLMPRE--MKNLISWNSLISGYAQTSEGVDIASKLFAEMPEKDLIS---- 220

Query: 594 HYACMIDLLSRAGRLDEA---FEMVKGMKIKPNAGIWGTLL 631
            +  MID   + GR+++A   F+MV     + +   W T++
Sbjct: 221 -WNSMIDGYVKHGRIEDAKDLFDMVP----RRDVVTWATMI 256


>gi|357167647|ref|XP_003581265.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g08490-like [Brachypodium
           distachyon]
          Length = 929

 Score =  341 bits (875), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 221/714 (30%), Positives = 377/714 (52%), Gaps = 60/714 (8%)

Query: 43  QKNTVTYNSMISAYAK---NGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEAREL 99
           + +T+  N++IS YAK   +G ++DA + F  +  +++VSWNS+IAG+  N   KEA  L
Sbjct: 222 ESDTLCGNALISLYAKCGGSGTMDDAHRAFSSIGCKDVVSWNSIIAGHSENGLFKEALAL 281

Query: 100 FDKMFR----PDLFSWA--LMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGY 150
           F +M      P+  + A  L +  +   G+    +E+   +       D +  NA++  Y
Sbjct: 282 FGQMTSDKCLPNYSTVANILPVCSFMEHGKY-YGKEVHGFVFRVGLYVDISVCNALMTHY 340

Query: 151 AKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE----MHLASKFFEAMEERDVVSWN 206
           +K+     A+ +  +M +++I++WN+++SGY  NG     + L  +        D VS  
Sbjct: 341 SKVYEMRAAESIFRSMNTRDIITWNTIISGYLMNGYHSRVLDLFHRLLSTGMTPDSVSLI 400

Query: 207 LMLDGYVELDDLDSA-----WKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
            +L    ++ D         + F   +  Q      +++S Y++  R  +A   F  +  
Sbjct: 401 SLLTACAQVGDAKGGMGVHGYIFRHPVLHQETSLMNSLVSFYSQCNRFDDALHAFADILS 460

Query: 262 RNVVAWNAMIAAYVQRGQ-IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
           ++ ++WNA+++A  +RG+ IEE  +LF EM        +  I   VR++ L  + +++ +
Sbjct: 461 KDSISWNAILSACAKRGKHIEEFFKLFNEMCHEVTRWDSVTILNVVRVSNLCGSTKMVRE 520

Query: 321 MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF 380
                 A   ++  GY+    +  AN I D                YA+CG   +A  LF
Sbjct: 521 ------AHGYSLRVGYIGETSV--ANAILD---------------AYAKCGYPQDADVLF 557

Query: 381 RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
           R +  ++IVT+NTMI+ Y +   +++A  IF +M K+  T +WN +I  + QN     A 
Sbjct: 558 RNLAVRNIVTYNTMISCYLKNSSVEEAEIIFNQMSKKDQT-TWNLMIQVYAQNGMCDQAF 616

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500
            +F    ++ +  D  ++   L AC HL+ +QL RQ H   +++  + D+ +  SL+  Y
Sbjct: 617 SLF----RQLQCPDTISITNILLACIHLSLVQLVRQCHGYMLRAS-LEDIHLEGSLLDAY 671

Query: 501 AKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
           +KCG I +A  LF+ +   D++++ ++I GYA++G A EA++LF EM+  G+ PD V   
Sbjct: 672 SKCGNITDAYNLFQVSPTKDLVTFTAMIGGYAMHGMAEEAVELFSEMLTLGIGPDHVVLT 731

Query: 561 GVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKI 620
            +LSACSH GLVD G+K+F+ + E+Y IEP  EHY CM+DLLSR GRL +A+     M  
Sbjct: 732 ALLSACSHAGLVDAGIKIFKSVREIYRIEPTAEHYTCMVDLLSRGGRLQDAYNFALDMPP 791

Query: 621 K-PNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEK 679
              NA  WG+L+GAC++H ++++G++A ++L  +E      Y  +SN++A    WD VE 
Sbjct: 792 HLVNANAWGSLIGACKVHGDVRIGQLAADQLFSMEFGDIGNYVTVSNIYAAGEEWDGVEH 851

Query: 680 VRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           VR  M+    +K  GCS         TF++ D K    + I +T   L  QI++
Sbjct: 852 VRKLMKSKDMKKPAGCS-------XGTFIASDVKHQDRSSIHDTSGILYQQIKD 898



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 125/488 (25%), Positives = 205/488 (42%), Gaps = 76/488 (15%)

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
           CWN +        + ++A  L DA+P+ +    + +L   T NG+   +      M  R 
Sbjct: 29  CWNRL--------HKSDAHSLFDAVPATDHRHCSELLRARTANGDHSGSISLLRGMLGRG 80

Query: 202 VVSWNLMLDGYVE----LDDLDSAWKFFQKIPEQN-----VVSWVTMLSGYARNGRMLEA 252
           +    L L   ++    L D +S  +       +      V     ++  Y R G + +A
Sbjct: 81  LRPDRLALAAAIKSASALRDGESLGRCLHGFVVRTGHAAGVAVAKAVMDMYGRCGTLADA 140

Query: 253 RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM-----PERNPVSWTTMIDGYVR 307
           R +FD+M   + V WN +I    + G  ++   LF  M      E  P + T  +   V 
Sbjct: 141 RLVFDEMSCPDTVCWNILITGSSRAGYFDDVFDLFRSMVACGADESMPTAVTVAVVIPV- 199

Query: 308 IAKLDEARRLLDQMPY-------KNIAAQTAMISGYVQ---NKRMDEANQIFDKIGTHDV 357
            AKL   R  +    Y        +     A+IS Y +   +  MD+A++ F  IG  DV
Sbjct: 200 CAKLRVLRAGMSIHGYVVKTGLESDTLCGNALISLYAKCGGSGTMDDAHRAFSSIGCKDV 259

Query: 358 VCWNVMIKGYAQCGRMDEAINLFRQMVNK------------------------------- 386
           V WN +I G+++ G   EA+ LF QM +                                
Sbjct: 260 VSWNSIIAGHSENGLFKEALALFGQMTSDKCLPNYSTVANILPVCSFMEHGKYYGKEVHG 319

Query: 387 ---------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHL 437
                    DI   N ++  Y+++ +M  A  IF  M   R+ ++WN +ISG+L N +H 
Sbjct: 320 FVFRVGLYVDISVCNALMTHYSKVYEMRAAESIFRSM-NTRDIITWNTIISGYLMNGYHS 378

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN-DLFVGNSL 496
             L +F  +   G   D  +L   L+ACA +   + G  +H    +   ++ +  + NSL
Sbjct: 379 RVLDLFHRLLSTGMTPDSVSLISLLTACAQVGDAKGGMGVHGYIFRHPVLHQETSLMNSL 438

Query: 497 ITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING-NATEAIKLFEEMVMEGVAPD 555
           ++ Y++C R  +A   F D    D ISWN++++  A  G +  E  KLF EM  E    D
Sbjct: 439 VSFYSQCNRFDDALHAFADILSKDSISWNAILSACAKRGKHIEEFFKLFNEMCHEVTRWD 498

Query: 556 PVTFIGVL 563
            VT + V+
Sbjct: 499 SVTILNVV 506



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 119/276 (43%), Gaps = 36/276 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +   N  I+   K+  VEEA  IF+QMS+K+  T+N MI  YA+NG  + A  LF Q+  
Sbjct: 565 IVTYNTMISCYLKNSSVEEAEIIFNQMSKKDQTTWNLMIQVYAQNGMCDQAFSLFRQLQC 624

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWAL---MITCYTRKGELEKARELF 131
            + +S  +++   +H   V+  R+    M R  L    L   ++  Y++ G +  A  LF
Sbjct: 625 PDTISITNILLACIHLSLVQLVRQCHGYMLRASLEDIHLEGSLLDAYSKCGNITDAYNLF 684

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEM 187
            + P K D   + AM+ GYA  G   EA +L   M +  I    V   ++LS  +  G +
Sbjct: 685 QVSPTK-DLVTFTAMIGGYAMHGMAEEAVELFSEMLTLGIGPDHVVLTALLSACSHAGLV 743

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
               K F+++ E                           +I E     +  M+   +R G
Sbjct: 744 DAGIKIFKSVRE-------------------------IYRI-EPTAEHYTCMVDLLSRGG 777

Query: 248 RMLEARRLFDQMP--IRNVVAWNAMIAAYVQRGQIE 281
           R+ +A      MP  + N  AW ++I A    G + 
Sbjct: 778 RLQDAYNFALDMPPHLVNANAWGSLIGACKVHGDVR 813



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 4/150 (2%)

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACAL-SACAHLAALQLGRQIHHLAIKSGYVNDLF 491
           N  H  ++ +   M   G + D   LA A+ SA A      LGR +H   +++G+   + 
Sbjct: 63  NGDHSGSISLLRGMLGRGLRPDRLALAAAIKSASALRDGESLGRCLHGFVVRTGHAAGVA 122

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
           V  +++ MY +CG + +A L+F +    D + WN LI G +  G   +   LF  MV  G
Sbjct: 123 VAKAVMDMYGRCGTLADARLVFDEMSCPDTVCWNILITGSSRAGYFDDVFDLFRSMVACG 182

Query: 552 V---APDPVTFIGVLSACSHVGLVDGGLKL 578
                P  VT   V+  C+ + ++  G+ +
Sbjct: 183 ADESMPTAVTVAVVIPVCAKLRVLRAGMSI 212


>gi|224095278|ref|XP_002310370.1| predicted protein [Populus trichocarpa]
 gi|222853273|gb|EEE90820.1| predicted protein [Populus trichocarpa]
          Length = 711

 Score =  341 bits (875), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 211/654 (32%), Positives = 335/654 (51%), Gaps = 92/654 (14%)

Query: 170 NIVSWNSMLSGYTK--NGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK 227
           +I   N++L  Y+K  +G+++LA K F+ M  +D V+WN M+ GYVE  +L +AW+F + 
Sbjct: 33  HIYVANNILFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMITGYVESGNLGAAWEFLKS 92

Query: 228 IPEQNV----VSWVTMLSGYARNGRMLEARRLFDQMPI----RNVVAWNAMIAAYVQRGQ 279
           +  +       ++ ++L G A   R    +++   +      ++V A +A++  Y +  +
Sbjct: 93  MKRRGFQADGYTFGSILKGVAHACRHDLGQQVHSLIVKIGYEQSVYAGSALLDMYAKCER 152

Query: 280 IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ---------- 329
           +E+A  +F  MP RN VSW  +IDG+V++   D A  LLD M  + +  +          
Sbjct: 153 VEDAYDVFQGMPVRNFVSWNALIDGFVQVGDRDTAFWLLDCMQKEGVRVEDGTFAPLLTL 212

Query: 330 -----------------------------TAMISGYVQNKRMDEANQIFD-KIGTHDVVC 359
                                         A ++ Y +   +++A ++FD  +GT D+V 
Sbjct: 213 LDGDKFYKLTMQLHCKIIKHGLEFYNALCNATLTAYSECGLLEDAKRVFDGAVGTRDLVT 272

Query: 360 WNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTW------------------------ 391
           WN M+  Y    + ++A NLF +M       DI T+                        
Sbjct: 273 WNSMLVAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISACFAAAHKNYGKSFHALVI 332

Query: 392 -----------NTMIAGYAQI--RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
                      N +I  Y ++  + M+ A+ +F  M K ++ VSWN++++GF Q  F  D
Sbjct: 333 KRGLEESVTICNALITMYLKLNNKSMEAALNLFHSM-KSKDRVSWNSILTGFSQMGFSED 391

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
           ALK+F  M    ++ D    +  L +C+ LA LQLG+QIH L +K+G+ ++ FV +SLI 
Sbjct: 392 ALKLFGHMRSSLEEIDDYAYSAVLRSCSDLAILQLGQQIHLLTVKTGFDSNDFVASSLIF 451

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           MY+KCG I++A   F+D      I+WNS++  YA +G    A+ LF  M    V  D VT
Sbjct: 452 MYSKCGIIEDAWKCFEDTTKESSITWNSIMFAYAQHGQGDVALDLFSIMREREVKLDHVT 511

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
           F+ VL+ACSHVGLV+ G  + + M   Y I P +EHYAC +DL  RAG L+EA  ++  M
Sbjct: 512 FVAVLTACSHVGLVEQGRCVLKSMESDYGIPPRMEHYACAVDLFGRAGYLEEAKALIDSM 571

Query: 619 KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVE 678
             +PNA +  TLLGACR   NI+L      +L E+EP++   Y +LSNM+    RWD+  
Sbjct: 572 PFQPNAMVLKTLLGACRACGNIELAAQVASQLLEVEPEEHCTYVILSNMYGHLKRWDDKA 631

Query: 679 KVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            V   M     +K PG SWIEVKN++H F + D     + ++   L  L  +++
Sbjct: 632 SVTRLMRERKVKKVPGWSWIEVKNEVHAFKAEDRSHPYSEDVYQILGELMEEMK 685



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 115/495 (23%), Positives = 235/495 (47%), Gaps = 68/495 (13%)

Query: 50  NSMISAYAK--NGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM---- 103
           N+++  Y+K  +G +N A KLF++MP ++ V+WN+MI GY+ +  +  A E    M    
Sbjct: 38  NNILFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMITGYVESGNLGAAWEFLKSMKRRG 97

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAK 160
           F+ D +++  ++         +  +++  L+     ++     +A++  YAK     +A 
Sbjct: 98  FQADGYTFGSILKGVAHACRHDLGQQVHSLIVKIGYEQSVYAGSALLDMYAKCERVEDAY 157

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
            +   MP +N VSWN+++ G+ + G+   A    + M++  V   +      + L D D 
Sbjct: 158 DVFQGMPVRNFVSWNALIDGFVQVGDRDTAFWLLDCMQKEGVRVEDGTFAPLLTLLDGDK 217

Query: 221 AWKFFQ----KIPEQNVVSWVTM----LSGYARNGRMLEARRLFD-QMPIRNVVAWNAMI 271
            +K       KI +  +  +  +    L+ Y+  G + +A+R+FD  +  R++V WN+M+
Sbjct: 218 FYKLTMQLHCKIIKHGLEFYNALCNATLTAYSECGLLEDAKRVFDGAVGTRDLVTWNSML 277

Query: 272 AAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARR----LLDQMPY 323
            AY+   + E+A  LF+EM     E +  ++T +I      A  +  +     ++ +   
Sbjct: 278 VAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISACFAAAHKNYGKSFHALVIKRGLE 337

Query: 324 KNIAAQTAMISGYVQ--NKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
           +++    A+I+ Y++  NK M+ A  +F  + + D V WN ++ G++Q G  ++A+ LF 
Sbjct: 338 ESVTICNALITMYLKLNNKSMEAALNLFHSMKSKDRVSWNSILTGFSQMGFSEDALKLFG 397

Query: 382 QM---------------------------------------VNKDIVTWNTMIAGYAQIR 402
            M                                        + +    +++I  Y++  
Sbjct: 398 HMRSSLEEIDDYAYSAVLRSCSDLAILQLGQQIHLLTVKTGFDSNDFVASSLIFMYSKCG 457

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
            ++DA K FE+  K  ++++WN+++  + Q+     AL +F +M +   K DH T    L
Sbjct: 458 IIEDAWKCFEDTTK-ESSITWNSIMFAYAQHGQGDVALDLFSIMREREVKLDHVTFVAVL 516

Query: 463 SACAHLAALQLGRQI 477
           +AC+H+  ++ GR +
Sbjct: 517 TACSHVGLVEQGRCV 531



 Score = 72.8 bits (177), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 82/156 (52%), Gaps = 4/156 (2%)

Query: 478 HHLAIKSGYVNDLFVGNSLITMYAKC--GRIQNAELLFKDADPVDVISWNSLIAGYAING 535
           H  A KSG ++ ++V N+++  Y+KC  G +  A  LF +    D ++WN++I GY  +G
Sbjct: 22  HCQAFKSGIISHIYVANNILFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMITGYVESG 81

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHY 595
           N   A +  + M   G   D  TF  +L   +H    D G ++   + ++   E  V   
Sbjct: 82  NLGAAWEFLKSMKRRGFQADGYTFGSILKGVAHACRHDLGQQVHSLIVKI-GYEQSVYAG 140

Query: 596 ACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           + ++D+ ++  R+++A+++ +GM ++ N   W  L+
Sbjct: 141 SALLDMYAKCERVEDAYDVFQGMPVR-NFVSWNALI 175


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  341 bits (875), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 221/720 (30%), Positives = 370/720 (51%), Gaps = 43/720 (5%)

Query: 39  SQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV------SWNSMIAGYLHNDK 92
           + + + N +T NS          + + ++L   M ++ L+      + N +IA  +    
Sbjct: 15  ASLKEANPITRNSSSKLLVNCKTLKELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGT 74

Query: 93  VKE---ARELF--DKMFRPDLFSWALMITCYTRKGELEKARELF------DLLPNKEDTA 141
           ++    AR  F  D      LF +  +I  Y   G  ++A  L+       ++P+K    
Sbjct: 75  LESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYT-- 132

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAMP----SKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            +  +++  +KI   +E  ++  A+       +I   NS++  Y + G++ L  K F+ M
Sbjct: 133 -FPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGM 191

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEAR 253
            ER+VVSW  +++GY   D    A   F ++ E  V    V+ V ++S  A+   +   +
Sbjct: 192 LERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGK 251

Query: 254 RLFDQ-----MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRI 308
           ++        M +  ++  NA++  Y++ G I  A ++F E   +N V + T++  YV  
Sbjct: 252 KVCSYISELGMELSTIMV-NALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHH 310

Query: 309 AKLDEARRLLDQM----PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW---- 360
               +   +LD+M    P  +     + I+   Q   +         +  + +  W    
Sbjct: 311 EWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNIS 370

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
           N +I  Y +CG+ + A  +F  M NK +VTWN++IAG  +   M+ A +IF+EM   R+ 
Sbjct: 371 NAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEM-LERDL 429

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
           VSWN +I   +Q     +A+++F  M  +G   D  T+    SAC +L AL L + +   
Sbjct: 430 VSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTY 489

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEA 540
             K+    DL +G +L+ M+++CG   +A  +FK  +  DV +W + I   A+ GN   A
Sbjct: 490 IEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGA 549

Query: 541 IKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMID 600
           I+LF EM+ + V PD V F+ +L+ACSH G VD G +LF  M + + I P + HY CM+D
Sbjct: 550 IELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVD 609

Query: 601 LLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSC 660
           LL RAG L+EA ++++ M I+PN  +WG+LL ACR H+N++L   A EKL++L P++   
Sbjct: 610 LLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGI 669

Query: 661 YALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           + LLSN++A AG+W +V +VR+ M+  G QK PG S IEV+  IH F SGD        I
Sbjct: 670 HVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHI 729



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/431 (24%), Positives = 199/431 (46%), Gaps = 51/431 (11%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQK----NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           I+   K   +E   K+ S +S+     +T+  N+++  Y K G +  AR++F++   +NL
Sbjct: 238 ISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNL 297

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELE--KARELF 131
           V +N++++ Y+H++   +   + D+M     RPD  +    I    + G+L   K+   +
Sbjct: 298 VMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAY 357

Query: 132 DLLPNKEDTACW----NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
            L    E    W    NA++  Y K G    A K+ + MP+K +V+WNS+++G  ++G+M
Sbjct: 358 VLRNGLEG---WDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDM 414

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
            LA + F+ M ERD+VSWN M+   V++   + A + F+++  Q +      + G A   
Sbjct: 415 ELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASAC 474

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVR 307
             L A  L           W   +  Y+++  I    +L            T ++D + R
Sbjct: 475 GYLGALDL---------AKW---VCTYIEKNDIHVDLQL-----------GTALVDMFSR 511

Query: 308 IAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD-----KIGTHDVVCWNV 362
                 A  +  +M  ++++A TA I         + A ++F+     K+   DVV +  
Sbjct: 512 CGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVV-FVA 570

Query: 363 MIKGYAQCGRMDEAINLFRQM-----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
           ++   +  G +D+   LF  M     +   IV +  M+    +   +++AV + + M   
Sbjct: 571 LLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIE 630

Query: 418 RNTVSWNALIS 428
            N V W +L++
Sbjct: 631 PNDVVWGSLLA 641



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 128/575 (22%), Positives = 247/575 (42%), Gaps = 90/575 (15%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F  N  I    + G+V+   K+F  M ++N V++ S+I+ Y+      +A  LF QM +
Sbjct: 165 IFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGE 224

Query: 75  R----NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITC----YTRKGELEK 126
                N V+   +I+       ++  +++   +    +    +M+      Y + G++  
Sbjct: 225 AGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICA 284

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM----PSKNIVSWNSMLSGYT 182
           AR++FD   NK +   +N +++ Y      ++   +LD M    P  + V+  S ++   
Sbjct: 285 ARQIFDECANK-NLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACA 343

Query: 183 KNGEMHLASKFFEAMEERDVVSW----NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
           + G++ +       +    +  W    N ++D Y++    ++A K F+ +P + VV+W +
Sbjct: 344 QLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNS 403

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN-PVS 297
           +++G  R+G M  A R+FD+M  R++V+WN MI A VQ    EEA  LF EM  +  P  
Sbjct: 404 LIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGD 463

Query: 298 WTTMID-----GYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
             TM+      GY  +  LD A+ +   +   +I                        ++
Sbjct: 464 RVTMVGIASACGY--LGALDLAKWVCTYIEKNDIHVDL--------------------QL 501

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFE 412
           GT        ++  +++CG    A+++F++M  +D+  W   I   A     + A+++F 
Sbjct: 502 GT-------ALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFN 554

Query: 413 EMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQ 472
           E                                M ++  K D       L+AC+H  ++ 
Sbjct: 555 E--------------------------------MLEQKVKPDDVVFVALLTACSHGGSVD 582

Query: 473 LGRQIHHLAIKSGYVNDLFVG-NSLITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIA 529
            GRQ+     K+  +    V    ++ +  + G ++ A  L +    +P DV+ W SL+A
Sbjct: 583 QGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVV-WGSLLA 641

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLS 564
               + N   A    E++    +AP+ V    +LS
Sbjct: 642 ACRKHKNVELAHYAAEKLTQ--LAPERVGIHVLLS 674



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 141/321 (43%), Gaps = 32/321 (9%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V   N  I  L + G +E A +IF +M +++ V++N+MI A  +     +A +LF +M  
Sbjct: 398 VVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQN 457

Query: 75  RNLVSWN-SMIA-----GYLHN-DKVKEARELFDKM-FRPDLFSWALMITCYTRKGELEK 126
           + +     +M+      GYL   D  K      +K     DL     ++  ++R G+   
Sbjct: 458 QGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSS 517

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYT 182
           A  +F  +  K D + W A +   A  GN   A +L + M  + +    V + ++L+  +
Sbjct: 518 AMHVFKRM-EKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACS 576

Query: 183 KNGEMHLASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSW 236
             G +    + F +ME+       +V +  M+D       L+ A    Q +P E N V W
Sbjct: 577 HGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVW 636

Query: 237 VTMLSGYARNGRMLE-----ARRLFDQMPIRNVVAWNAMIA-AYVQRGQIEEAARLFIEM 290
            ++L+   R  + +E     A +L    P R  V  + +++  Y   G+  + AR+ ++M
Sbjct: 637 GSLLAA-CRKHKNVELAHYAAEKLTQLAPER--VGIHVLLSNIYASAGKWTDVARVRLQM 693

Query: 291 PERN----PVSWTTMIDGYVR 307
            E+     P S +  + G + 
Sbjct: 694 KEKGVQKVPGSSSIEVQGLIH 714


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  341 bits (874), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 199/570 (34%), Positives = 325/570 (57%), Gaps = 37/570 (6%)

Query: 193  FFEAMEERDVVSWNLMLDGYV--ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRML 250
            F+E     D +++N +L G      D  + A  F++ + + NV SW ++++  AR G  +
Sbjct: 1941 FYECF---DGITYNSILFGVPSGREDHSNLATWFYKYVDKSNVHSWNSVIADLARGGDSV 1997

Query: 251  EARRLFDQM------PIRN-----VVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWT 299
            EA R F  +      P R+     + + +A+      R   ++A   F+   E +    +
Sbjct: 1998 EALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQA---FVFGFETDLFVSS 2054

Query: 300  TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI------- 352
             +ID Y +  +L +AR L D++P +N+ + T+MI+GYVQN++ D A  +F          
Sbjct: 2055 ALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEV 2114

Query: 353  --GTHDVVCWNVMIKGYAQCGRMD-----EAINLF--RQMVNKDIVTWNTMIAGYAQIRQ 403
              G +  +   VM+   + C R+      E ++ F  ++  +  I   NT++  YA+  Q
Sbjct: 2115 EDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQ 2174

Query: 404  MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE-GKKADHSTLACAL 462
               + K+F+ M + ++ +SWN++I+ + Q+    +AL++F  M +  G + +  TL+  L
Sbjct: 2175 PLVSKKVFDWM-EEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVL 2233

Query: 463  SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
             ACAH  AL+ G+ IH   IK     ++ VG S+I MY KCGR++ A+  F      +V 
Sbjct: 2234 LACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVK 2293

Query: 523  SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
            SW +++AGY ++G A EA+ +F +MV  GV P+ +TF+ VL+ACSH GLV+ G   F  M
Sbjct: 2294 SWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAM 2353

Query: 583  TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKL 642
               Y IEP +EHY CM+DL  RAG L+EA+ ++K MK+KP+  +WG+LLGACR+H+N+ L
Sbjct: 2354 KHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDL 2413

Query: 643  GRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKN 702
            G IA +KL EL+P     Y LLSN++A+AGRW +VE++R+ M+     K PG S +E+K 
Sbjct: 2414 GEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKG 2473

Query: 703  QIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            ++H FL GD +      I   L+ L  +++
Sbjct: 2474 RVHVFLVGDKEHPHHEMIYKYLEKLTLELQ 2503



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 125/375 (33%), Positives = 195/375 (52%), Gaps = 26/375 (6%)

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMI 302
           Y+ +GR+  A  LF Q+       WN +I A    G  E+A  L+     +N V      
Sbjct: 69  YSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLY-----KNMVCQGIAA 123

Query: 303 DGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG-THDVVCWN 361
           D +                P+  I A T  +S  +   ++   + I  K G + DV   N
Sbjct: 124 DKFT--------------FPFV-IKACTNFLS--IDLGKVVHGSLI--KYGFSGDVFVQN 164

Query: 362 VMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
            +I  Y +CG    A+ +F +M  +++V+W T+I+G      + +A +IF+E+   +N V
Sbjct: 165 NLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEI-PSKNVV 223

Query: 422 SWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLA 481
           SW A+I+G+++N+   +AL++F  M  E    +  T+   + AC  +  L LGR IH  A
Sbjct: 224 SWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYA 283

Query: 482 IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
           IK+     +++G +LI MY+KCG I++A  +F+      + +WNS+I    ++G   EA+
Sbjct: 284 IKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEAL 343

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601
            LF EM    V PD +TFIGVL AC H+  V  G   F  MT+ Y I P+ EHY CM +L
Sbjct: 344 NLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTEL 403

Query: 602 LSRAGRLDEAFEMVK 616
            +R+  LDEAF+  K
Sbjct: 404 YARSNNLDEAFKSTK 418



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 171/378 (45%), Gaps = 46/378 (12%)

Query: 47   VTYNSMISAY--AKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
            +TYNS++      +    N A   ++ + + N+ SWNS+IA         EA   F  + 
Sbjct: 1948 ITYNSILFGVPSGREDHSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLR 2007

Query: 105  RPDLFSWALMITCYTRKGELEKARELFDLLPNK------------EDTACWNAMVAGYAK 152
            +  L        C      ++    L DL+  +             D    +A++  Y+K
Sbjct: 2008 KLGLIPTRSSFPC-----TIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSK 2062

Query: 153  IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM--EERDVVSW-NLML 209
             G   +A+ L D +P +N+VSW SM++GY +N +   A   F+    EE +V    N+ L
Sbjct: 2063 CGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPL 2122

Query: 210  DGYVELDDLDSAWKFFQKIPEQNVVSWV-------------TMLSGYARNGRMLEARRLF 256
            D  V +  L +  +   K   + V  +V             T++  YA+ G+ L ++++F
Sbjct: 2123 DSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVF 2182

Query: 257  DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER-----NPVSWTTMIDGYVRIAKL 311
            D M  ++ ++WN+MIA Y Q G   EA  +F  M        N V+ + ++        L
Sbjct: 2183 DWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGAL 2242

Query: 312  DEARRLLDQ-----MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG 366
               + + DQ     + Y N+   T++I  Y +  R++ A + FD++   +V  W  M+ G
Sbjct: 2243 RAGKCIHDQVIKMDLEY-NVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAG 2301

Query: 367  YAQCGRMDEAINLFRQMV 384
            Y   GR  EA+++F +MV
Sbjct: 2302 YGMHGRAKEALDIFYKMV 2319



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 153/345 (44%), Gaps = 38/345 (11%)

Query: 83  MIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTAC 142
           +I  Y  + ++  A  LF ++  P  F+W L+I   T  G  E+A  L+           
Sbjct: 65  LIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYK---------- 114

Query: 143 WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV 202
            N +  G A       A K       K   ++ S+  G   +G   L    F      DV
Sbjct: 115 -NMVCQGIA-------ADKFTFPFVIKACTNFLSIDLGKVVHGS--LIKYGFSG----DV 160

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR 262
              N ++D Y +      A K F+K+  +NVVSW T++SG    G + EARR+FD++P +
Sbjct: 161 FVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSK 220

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWT--TMIDGYVRIAKLDEARRLL 318
           NVV+W AMI  Y++  Q EEA  LF  M   N  P  +T  ++I     +  L   R + 
Sbjct: 221 NVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIH 280

Query: 319 DQMPYKN-----IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRM 373
           D    KN     +   TA+I  Y +   + +A ++F+ +    +  WN MI      G  
Sbjct: 281 D-YAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLG 339

Query: 374 DEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            EA+NLF +M    V  D +T+  ++     I+ + +    F  M
Sbjct: 340 QEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRM 384



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 136/268 (50%), Gaps = 17/268 (6%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
           +  SL   G  G  VF QN  I    K G    A+K+F +M  +N V++ ++IS     G
Sbjct: 147 VHGSLIKYGFSGD-VFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCG 205

Query: 61  RVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMIT 116
            + +AR++F+++P +N+VSW +MI GY+ N + +EA ELF +M      P+ ++   +I 
Sbjct: 206 DLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIK 265

Query: 117 CYTRKGELEKARELFDL-LPNKEDTACW--NAMVAGYAKIGNYNEAKKLLDAMPSKNIVS 173
             T  G L   R + D  + N  +   +   A++  Y+K G+  +A ++ + MP K++ +
Sbjct: 266 ACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPT 325

Query: 174 WNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP 229
           WNSM++    +G    A   F  ME    + D +++  +L   V + ++     +F ++ 
Sbjct: 326 WNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMT 385

Query: 230 EQNVVS-----WVTMLSGYARNGRMLEA 252
           +   ++     +  M   YAR+  + EA
Sbjct: 386 QHYGIAPIPEHYECMTELYARSNNLDEA 413



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 159/366 (43%), Gaps = 27/366 (7%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           I S +S    +T   +I  Y+ +GR+  A  LF Q+      +WN +I     N   ++A
Sbjct: 51  IRSGLSNDQLLT-RKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQA 109

Query: 97  RELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAG 149
             L+  M       D F++  +I   T    ++  + +   L       D    N ++  
Sbjct: 110 LMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDF 169

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML 209
           Y K G+   A K+ + M  +N+VSW +++SG    G++  A + F+ +  ++VVSW  M+
Sbjct: 170 YFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMI 229

Query: 210 DGYVELDDLDSAWKFFQKIPEQNVV----SWVTMLSGYARNGRMLEARRLFDQMPIRN-- 263
           +GY+     + A + F+++  +N+     + V+++      G +   R + D   I+N  
Sbjct: 230 NGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHD-YAIKNCI 288

Query: 264 ---VVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
              V    A+I  Y + G I++A  +F  MP ++  +W +MI          EA  L  +
Sbjct: 289 EIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSE 348

Query: 321 MPYKNIAAQTAMISGY----VQNKRMDEANQIFDKIGTHDVVC-----WNVMIKGYAQCG 371
           M   N+        G     V  K + E    F ++  H  +      +  M + YA+  
Sbjct: 349 MERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSN 408

Query: 372 RMDEAI 377
            +DEA 
Sbjct: 409 NLDEAF 414



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 156/354 (44%), Gaps = 32/354 (9%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN------- 81
           GR+  AI +F Q+    T T+N +I A   NG    A  L++ M  + + +         
Sbjct: 73  GRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVI 132

Query: 82  SMIAGYLHNDKVKEAR-ELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
                +L  D  K     L    F  D+F    +I  Y + G    A ++F+ +  + + 
Sbjct: 133 KACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVR-NV 191

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER 200
             W  +++G    G+  EA+++ D +PSKN+VSW +M++GY +N +   A + F+ M+  
Sbjct: 192 VSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAE 251

Query: 201 DVVSWNL----MLDGYVELDDL-------DSAWKFFQKIPEQNVVSWVTMLSGYARNGRM 249
           ++         ++    E+  L       D A K      E  V     ++  Y++ G +
Sbjct: 252 NIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIK---NCIEIGVYLGTALIDMYSKCGSI 308

Query: 250 LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN----PVSWTTMIDGY 305
            +A  +F+ MP +++  WN+MI +    G  +EA  LF EM   N     +++  ++   
Sbjct: 309 KDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCAC 368

Query: 306 VRIAKLDEARRLLDQMP-YKNIAA----QTAMISGYVQNKRMDEANQIFDKIGT 354
           V I  + E      +M  +  IA        M   Y ++  +DEA +   ++G+
Sbjct: 369 VHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEAFKSTKEVGS 422



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 94/415 (22%), Positives = 187/415 (45%), Gaps = 50/415 (12%)

Query: 26   GKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR-----NLVSW 80
             K G+   + K+F  M +K+ +++NSMI+ YA++G   +A ++F  M +      N V+ 
Sbjct: 2170 AKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTL 2229

Query: 81   NSMIAGYLHNDKVKEARELFDKMFRPDL----FSWALMITCYTRKGELEKARELFDLLPN 136
            ++++    H   ++  + + D++ + DL         +I  Y + G +E A++ FD +  
Sbjct: 2230 SAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKE 2289

Query: 137  KEDTACWNAMVAGYAKIGNYNEA----KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
            K +   W AMVAGY   G   EA     K++ A    N +++ S+L+  +  G +     
Sbjct: 2290 K-NVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWH 2348

Query: 193  FFEAME-----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSWVTMLSGYARN 246
            +F AM+     E  +  +  M+D +     L+ A+   +++  + + V W ++L G  R 
Sbjct: 2349 WFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLL-GACRI 2407

Query: 247  GRMLE-----ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN---PVSW 298
             + ++     A++LF+  P  N   +  +   Y   G+  +  R+ + M  R    P  +
Sbjct: 2408 HKNVDLGEIAAQKLFELDP-DNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGF 2466

Query: 299  TTM-IDGYVRIAKLDEARRLLDQMPYKNIAAQTAMIS--GYVQNKRM------DEANQIF 349
            + + + G V +  + +      +M YK +   T  +   GYV N         +E  +I 
Sbjct: 2467 SLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEII 2526

Query: 350  DKIGTHDV-VCWNVM----------IKGYAQCGRMDEAINLFRQMVNKDIVTWNT 393
             ++ +  + V + VM          IK    CG     I L  ++V++D V  ++
Sbjct: 2527 LRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDS 2581



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 5/172 (2%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           L  C +   L   RQIH   I+SG  ND  +   LI +Y+  GRI  A LLF        
Sbjct: 34  LQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCT 90

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC 581
            +WN +I    ING + +A+ L++ MV +G+A D  TF  V+ AC++   +D G  +   
Sbjct: 91  FTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGS 150

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
           + + Y     V     +ID   + G    A ++ + M+++ N   W T++  
Sbjct: 151 LIK-YGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVR-NVVSWTTVISG 200


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  341 bits (874), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 202/643 (31%), Positives = 317/643 (49%), Gaps = 88/643 (13%)

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV- 233
           N  L    K G +  A + F+ M ++D +SW  ++ GYV  +D   A   F+ +  ++  
Sbjct: 53  NKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGL 112

Query: 234 -------------------VSWVTMLSGYA--------------------RNGRMLEARR 254
                              V++  +L GYA                    +NG++ E RR
Sbjct: 113 RIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRR 172

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAK 310
           +F +MP+RNVV+W A+I   V+ G  +EA   F EM     E +  ++   +        
Sbjct: 173 VFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGA 232

Query: 311 LDEARRLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG 366
           L+  R +  Q   K     +     + + Y +  +++    +F+K+   DVV W  +I  
Sbjct: 233 LNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITT 292

Query: 367 YAQCGRMDEAINLFRQMVNKDI-------------------VTW---------------- 391
             Q G+ + A+  F +M   D+                   + W                
Sbjct: 293 LVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAAS 352

Query: 392 ----NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMT 447
               N+++  YA+  Q+  +  IF EM  RR+ VSW+ +I+G+ Q     +A ++   M 
Sbjct: 353 LSVENSIMTMYAKCGQLTSSSVIFHEM-TRRDIVSWSTIIAGYXQGGHVSEAFELLSWMR 411

Query: 448 QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
            EG K     LA  LSAC ++A L+ G+Q+H   +  G  +   V ++LI MY KCG I+
Sbjct: 412 MEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIE 471

Query: 508 NAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
            A  +F  A+  D++SW ++I GYA +G + E I LFE++   G+ PD VTFIGVLSACS
Sbjct: 472 EASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACS 531

Query: 568 HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIW 627
           H GLVD G   F  M++ Y I P  EHY CMIDLL RAGRL +A  M++ M    +  +W
Sbjct: 532 HAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVW 591

Query: 628 GTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGS 687
            TLL ACR+H +++ GR   E++ +LEP     +  L+N++A  G+W E   +R  M+  
Sbjct: 592 STLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSK 651

Query: 688 GAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQ 730
           G  K+PG SWI+VK+ +  F++GD    +  +I N L  LA++
Sbjct: 652 GVIKEPGWSWIKVKDLVFAFVAGDRSHPQGEDIYNMLDLLASR 694



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 130/576 (22%), Positives = 261/576 (45%), Gaps = 72/576 (12%)

Query: 41  MSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF 100
           +SQ +    N  +    K G + +AR++F++M Q++ +SW ++I+GY++ +   EA  LF
Sbjct: 44  ISQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLF 103

Query: 101 DKM-----FRPDLFSWALM-----ITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGY 150
             M      R D F  +L      +      GEL     +   L N       +A++  Y
Sbjct: 104 KNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNS--VFVGSALLDMY 161

Query: 151 AKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSWN 206
            K G   E +++   MP +N+VSW ++++G  + G    A  +F  M     E D  ++ 
Sbjct: 162 TKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFA 221

Query: 207 LMLDGYVELDDLDSAWKFFQKIPEQ--NVVSWV--TMLSGYARNGRMLEARRLFDQMPIR 262
           + L    +   L+   +   +  ++  +V S+V  T+ + Y + G++     LF++M +R
Sbjct: 222 IALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMR 281

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLL 318
           +VV+W  +I   VQ GQ E A + FI M E     N  ++  +I G   +A+++   +L 
Sbjct: 282 DVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLH 341

Query: 319 DQMPYKNIAA----QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMD 374
             + +  +AA    + ++++ Y +  ++  ++ IF ++   D+V W+ +I GY Q G + 
Sbjct: 342 ALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVS 401

Query: 375 EAINLFRQM---------------------------------------VNKDIVTWNTMI 395
           EA  L   M                                       +    +  + +I
Sbjct: 402 EAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALI 461

Query: 396 AGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADH 455
             Y +   +++A +IF+   +  + VSW A+I+G+ ++ +  + + +F  + + G + D 
Sbjct: 462 NMYCKCGSIEEASRIFDA-AENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDS 520

Query: 456 STLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG-NSLITMYAKCGRIQNAELLFK 514
            T    LSAC+H   + LG    +   K   ++        +I +  + GR+ +AE +  
Sbjct: 521 VTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMI- 579

Query: 515 DADPV--DVISWNSLIAGYAINGNATEAIKLFEEMV 548
           +A P   D + W++L+    ++G+     +  E ++
Sbjct: 580 EAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERIL 615



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 98/449 (21%), Positives = 191/449 (42%), Gaps = 72/449 (16%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMIS-------------------- 54
           VF  +  +    K+G++ E  ++F +M  +N V++ ++I+                    
Sbjct: 151 VFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWR 210

Query: 55  ---------------AYAKNGRVNDARKLFEQMPQRNL----VSWNSMIAGYLHNDKVKE 95
                          A A +G +N  R++  Q  ++         N++   Y    K++ 
Sbjct: 211 SRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEY 270

Query: 96  ARELFDKMFRPDLFSWALMITCYTRKGELEKARELF------DLLPNKEDTACWNAMVAG 149
              LF+KM   D+ SW  +IT   + G+ E A + F      D+ PN+   A   A+++G
Sbjct: 271 GLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFA---AVISG 327

Query: 150 YAKIGNYNEAKKL----LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW 205
            A +      ++L    L    + ++   NS+++ Y K G++  +S  F  M  RD+VSW
Sbjct: 328 CANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSW 387

Query: 206 NLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSGYA-----RNGRMLEARRLF 256
           + ++ GY +   +  A++    +    P+    +  ++LS         +G+ L A  L 
Sbjct: 388 STIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLS 447

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
             +     +  +A+I  Y + G IEEA+R+F      + VSWT MI+GY       E   
Sbjct: 448 IGLE-HTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVID 506

Query: 317 LLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFDKIGTHDVVC-----WNVMIKGY 367
           L +++P   +   +     ++S       +D     F+ +     +      +  MI   
Sbjct: 507 LFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLL 566

Query: 368 AQCGRMDEAINLFRQM-VNKDIVTWNTMI 395
            + GR+ +A ++   M  ++D V W+T++
Sbjct: 567 CRAGRLSDAEHMIEAMPFHRDDVVWSTLL 595



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 132/305 (43%), Gaps = 35/305 (11%)

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD 387
           A T  I   V  +  D  +Q    I   D+   N  +K   + G +  A  +F +M  KD
Sbjct: 20  ASTECIDLQVLERSNDNLSQNIHFISQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKD 79

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMT 447
            ++W T+I+GY       +A+ +F+ M                                 
Sbjct: 80  EISWTTLISGYVNANDSSEALLLFKNM-------------------------------RV 108

Query: 448 QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
           + G + D   L+ A  AC   + +  G  +H  A+K+G VN +FVG++L+ MY K G+I 
Sbjct: 109 ESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIF 168

Query: 508 NAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
               +F +    +V+SW ++I G    G   EA+  F EM    V  D  TF   L AC+
Sbjct: 169 EGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACA 228

Query: 568 HVGLVDGGLKLF-ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGI 626
             G ++ G ++  + M + + +   V +   +  + ++ G+L+    + + M ++     
Sbjct: 229 DSGALNYGREIHAQAMKKGFDVSSFVAN--TLATMYNKCGKLEYGLTLFEKMSMRDVVS- 285

Query: 627 WGTLL 631
           W T++
Sbjct: 286 WTTII 290



 Score = 46.6 bits (109), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 11/114 (9%)

Query: 459 ACALSACAHLAALQ-----LGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
           A A + C  L  L+     L + IH ++       DL   N  +    K G + NA  +F
Sbjct: 18  AVASTECIDLQVLERSNDNLSQNIHFIS-----QTDLPESNKQLKELVKTGHLGNARRMF 72

Query: 514 KDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME-GVAPDPVTFIGVLSAC 566
                 D ISW +LI+GY    +++EA+ LF+ M +E G+  DP        AC
Sbjct: 73  DKMSQKDEISWTTLISGYVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKAC 126


>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
          Length = 870

 Score =  341 bits (874), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 217/727 (29%), Positives = 355/727 (48%), Gaps = 108/727 (14%)

Query: 110 SWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDA---- 165
           S AL   C    G+L +A  L +  P   D          Y  +    E ++ +DA    
Sbjct: 68  SAALRALC--SHGQLAQALWLLESSPEPPDEG-------AYVALFRLCEWRRAVDAGMRA 118

Query: 166 -------MPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDL 218
                   PS  +   N+MLS   + GE+  A + F  M ERDV SWN+M+ GY ++  L
Sbjct: 119 CARADAEHPSFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFL 178

Query: 219 DSAWKFFQKI------PEQNVVSWVTMLSG------------------------------ 242
           + A   + ++      P+      V    G                              
Sbjct: 179 EEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNAL 238

Query: 243 ---YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PER 293
              YA+ G ++ AR++FD M + + ++WNAMIA + +  + E    LF+ M      P  
Sbjct: 239 VTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNL 298

Query: 294 NPVSWTTMIDG---------------------------------YVRIAKLDEARRLLDQ 320
             ++  T+  G                                 Y  + ++ +A ++  +
Sbjct: 299 MTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSR 358

Query: 321 MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC----GRMDEA 376
           M  K+  + TAMISGY +N   D+A +++  +  H+V   +V I          GR+D  
Sbjct: 359 METKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVG 418

Query: 377 INLFRQMVNKDIVTW----NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
           I L     NK  + +    N ++  YA+ + +D A+++F+ M ++ + VSW+++I+GF  
Sbjct: 419 IKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEK-DVVSWSSMIAGFCF 477

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
           N    +AL  F  M     K +  T   ALSACA   AL+ G++IH   ++ G  ++ +V
Sbjct: 478 NHRSFEALYYFRYMLGH-VKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYV 536

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
            N+L+ +Y KCG+   A   F      DV+SWN +++G+  +G    A+ LF +MV  G 
Sbjct: 537 PNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGE 596

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
            PD VTF+ +L ACS  G+V  G +LF  MTE ++I P ++HYACM+DLLSR G+L EA+
Sbjct: 597 HPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAY 656

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672
            ++  M IKP+A +WG LL  CR+H++++LG +A + + ELEP   + + LL +++ +AG
Sbjct: 657 NLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDLYTDAG 716

Query: 673 RWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +W +V +VR +M   G ++  GCSW+EVK   H FL+ D    +  EI   L  +  +++
Sbjct: 717 KWAQVARVRKTMREKGLEQDNGCSWVEVKGVTHAFLTDDESHPQIKEINVVLHGIYERMK 776

Query: 733 NTPLAVI 739
               A +
Sbjct: 777 ACGFAPV 783



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 121/498 (24%), Positives = 216/498 (43%), Gaps = 101/498 (20%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----R 105
           N+M+S   + G +  A ++F +MP+R++ SWN M+ GY     ++EA +L+ +M     R
Sbjct: 135 NAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMR 194

Query: 106 PDLFSWALMI-TCYT----RKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
           PD++++  ++ TC      R G    A  L     ++ D    NA+V  YAK G+   A+
Sbjct: 195 PDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVL--NALVTMYAKCGDIVAAR 252

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER-------------------- 200
           K+ D M   + +SWN+M++G+ +N E     + F  M E                     
Sbjct: 253 KVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLS 312

Query: 201 -------------------DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
                              DV   N ++  Y  L  +  A K F ++  ++ +SW  M+S
Sbjct: 313 EVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMIS 372

Query: 242 GYARNGRMLEARRLFDQMP---------------------------------------IR 262
           GY +NG   +A  ++  M                                        IR
Sbjct: 373 GYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIR 432

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA----RRLL 318
            VV  NA++  Y +   I++A  +F  M E++ VSW++MI G+    +  EA    R +L
Sbjct: 433 YVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYML 492

Query: 319 DQMPYKNI----AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMD 374
             +   ++    A      +G +++ +   A  +   IG+   V  N ++  Y +CG+  
Sbjct: 493 GHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVP-NALLDLYVKCGQTS 551

Query: 375 EAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFE---EMGKRRNTVSWNALISGFL 431
            A   F     KD+V+WN M++G+      D A+ +F    EMG+  + V++ AL+    
Sbjct: 552 YAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACS 611

Query: 432 QNEFHLDALKIFVLMTQE 449
           +    +   ++F +MT++
Sbjct: 612 RAGMVIQGWELFHMMTEK 629



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 116/479 (24%), Positives = 205/479 (42%), Gaps = 69/479 (14%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----R 105
           N++++ YAK G +  ARK+F+ M   + +SWN+MIAG+  N + +   ELF  M     +
Sbjct: 236 NALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQ 295

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKL 162
           P+L +   +        E+  A+E+      +    D A  N+++  Y  +G   +A K+
Sbjct: 296 PNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKI 355

Query: 163 LDAMPSKNIVSWNSMLSGYTKNG------------EMHLAS------------------- 191
              M +K+ +SW +M+SGY KNG            E+H  S                   
Sbjct: 356 FSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRL 415

Query: 192 ----KFFEAMEE----RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGY 243
               K  E  +     R VV  N +L+ Y +   +D A + F+ + E++VVSW +M++G+
Sbjct: 416 DVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGF 475

Query: 244 ARNGRMLEARRLFDQMPIR---NVVAWNAMIAAYVQRGQIEEAA-------RLFIEMPER 293
             N R  EA   F  M      N V + A ++A    G +           R  I     
Sbjct: 476 CFNHRSFEALYYFRYMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGY 535

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK-- 351
            P     ++D YV+  +   A         K++ +   M+SG+V +   D A  +F++  
Sbjct: 536 VP---NALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMV 592

Query: 352 -IGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWN-----TMIAGYAQIRQM 404
            +G H D V +  ++   ++ G + +   LF  M  K  +  N      M+   +++ ++
Sbjct: 593 EMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKL 652

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGF-LQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
            +A  +   M  + +   W AL++G  +     L  L   V++  E     +  L C L
Sbjct: 653 TEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDL 711



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 154/324 (47%), Gaps = 29/324 (8%)

Query: 29  GRVEEAIKIFSQMSQKNTVTY----NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMI 84
           GR++  IK+      K  + Y    N+++  YAK+  ++ A ++F+ M ++++VSW+SMI
Sbjct: 413 GRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMI 472

Query: 85  AGYLHNDKVKEARELFDKMF---RPDLFSWALMITCYTRKGELEKARELFDLLPN---KE 138
           AG+  N +  EA   F  M    +P+  ++   ++     G L   +E+   +       
Sbjct: 473 AGFCFNHRSFEALYYFRYMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGS 532

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM- 197
           +    NA++  Y K G  + A         K++VSWN MLSG+  +G   +A   F  M 
Sbjct: 533 EGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMV 592

Query: 198 ---EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ-----NVVSWVTMLSGYARNGRM 249
              E  D V++  +L        +   W+ F  + E+     N+  +  M+   +R G++
Sbjct: 593 EMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKL 652

Query: 250 LEARRLFDQMPIR-NVVAWNAM-----IAAYVQRGQIEEAARLFIEMPERNPVSWTTMI- 302
            EA  L ++MPI+ +   W A+     I  +V+ G++  AA++ +E+ E N V++  ++ 
Sbjct: 653 TEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGEL--AAKVILEL-EPNDVAYHVLLC 709

Query: 303 DGYVRIAKLDEARRLLDQMPYKNI 326
           D Y    K  +  R+   M  K +
Sbjct: 710 DLYTDAGKWAQVARVRKTMREKGL 733



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 103/424 (24%), Positives = 180/424 (42%), Gaps = 81/424 (19%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I      GR+ +A KIFS+M  K+ +++ +MIS Y KNG  + A +++  M      
Sbjct: 337 NSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALME----- 391

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK- 137
                    LHN               PD  + A  +      G L+   +L +L  NK 
Sbjct: 392 ---------LHN-------------VSPDDVTIASALAACACLGRLDVGIKLHELAQNKG 429

Query: 138 --EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
                   NA++  YAK  + ++A ++   M  K++VSW+SM++G+  N     A  +F 
Sbjct: 430 FIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFR 489

Query: 196 AM-------------------------EERDVVSW-------------NLMLDGYVELDD 217
            M                           +++ ++             N +LD YV+   
Sbjct: 490 YMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQ 549

Query: 218 LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM----PIRNVVAWNAMIAA 273
              AW  F    E++VVSW  MLSG+  +G    A  LF+QM       + V + A++ A
Sbjct: 550 TSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCA 609

Query: 274 YVQRGQIEEAARLFIEMPER-----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYK-NIA 327
             + G + +   LF  M E+     N   +  M+D   R+ KL EA  L+++MP K + A
Sbjct: 610 CSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAA 669

Query: 328 AQTAMISGYVQNKRM---DEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
              A+++G   ++ +   + A ++  ++  +DV    ++   Y   G+  +   + + M 
Sbjct: 670 VWGALLNGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMR 729

Query: 385 NKDI 388
            K +
Sbjct: 730 EKGL 733



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 97/204 (47%), Gaps = 18/204 (8%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS  +  N  +    K G+   A   FS  S+K+ V++N M+S +  +G  + A  LF Q
Sbjct: 531 GSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQ 590

Query: 72  M----PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKG 122
           M       + V++ +++        V +  ELF  M       P+L  +A M+   +R G
Sbjct: 591 MVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVG 650

Query: 123 ELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNE-----AKKLLDAMPSKNIVSWNSM 177
           +L +A  L + +P K D A W A++ G  +I  + E     AK +L+  P  N V+++ +
Sbjct: 651 KLTEAYNLINRMPIKPDAAVWGALLNG-CRIHRHVELGELAAKVILELEP--NDVAYHVL 707

Query: 178 LSG-YTKNGEMHLASKFFEAMEER 200
           L   YT  G+    ++  + M E+
Sbjct: 708 LCDLYTDAGKWAQVARVRKTMREK 731


>gi|413918395|gb|AFW58327.1| hypothetical protein ZEAMMB73_709604 [Zea mays]
          Length = 906

 Score =  341 bits (874), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 219/718 (30%), Positives = 375/718 (52%), Gaps = 55/718 (7%)

Query: 43  QKNTVTYNSMISAYAKNG--RVN-DARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEAREL 99
           + +T+  N+++S YAK G  RV  DA + F  +  +++VSWNS+IAGY+ N    EA  L
Sbjct: 207 ESDTLCGNALVSMYAKCGGSRVMVDAHRAFSSIRCKDVVSWNSVIAGYIENQLFGEALAL 266

Query: 100 FDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYN-- 157
           F +M                 +G L     +  +LP           V  + + G ++  
Sbjct: 267 FSQMIS---------------QGYLPNYSTVASILP-----------VCSFTEFGRHHGK 300

Query: 158 EAKKLL--DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
           E    +    M     VS N++++ Y+K  EM      F +M+ RD+VSWN ++ GYV  
Sbjct: 301 EVHSFVVRHGMEIDVSVS-NALMTHYSKVLEMKDVESIFTSMDVRDIVSWNTIIAGYVMN 359

Query: 216 DDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRM---LEARRLFDQMPI-RNVVAW 267
                A   FQ +    +    VS++++L+  A+ G +   +E      Q P+ +     
Sbjct: 360 GYHHRALGLFQGLLSTGIAPDSVSFISLLTACAQVGDVKTGMEVHGYIFQRPVLQETSLM 419

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYV----RIAK----LDEARRLLD 319
           NA++  Y    + ++A R F ++  ++ +SW  ++         I K    + E  R ++
Sbjct: 420 NALVTFYSHCDRFDDAFRAFTDILNKDSISWNAILSACATSEQHIEKFFVLMSEMCRGVN 479

Query: 320 QMPYKNIAAQTAM-ISGYVQNKRMDEANQIFDKIG-THDVVCWNVMIKGYAQCGRMDEAI 377
           Q  + ++     + +S +   K + EA+    ++G T +    N ++  Y +CG   +A 
Sbjct: 480 QCQWDSVTVLNVIHMSTFCGIKMVREAHGWSLRVGYTGETSVANAILDAYVKCGYSHDAS 539

Query: 378 NLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHL 437
            LFR    ++IVT N MI+ Y +   ++DA  IF  M ++ +  SWN +I  + QN+   
Sbjct: 540 ILFRNHAGRNIVTDNIMISCYLKSNCIEDAEVIFNHMAEK-DLTSWNLMIQLYAQNDMDG 598

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
            A  +F  +  EG K D  ++A  L AC HL ++QL RQ H   +++  + D+ +  +L+
Sbjct: 599 QAFSLFNHLQSEGLKPDIVSIANILEACIHLCSVQLVRQCHAYMLRAS-LEDIHLEGALV 657

Query: 498 TMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
             Y+KCG I NA  +F+ +   D++++ ++I  YA++G A EA++LF +M+   + PD V
Sbjct: 658 DAYSKCGNITNAYNIFQISPKKDLVTFTAMIGCYAMHGMAEEAVELFSKMLKLDIRPDHV 717

Query: 558 TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKG 617
               +LSACSH GLVD G+K+F+ + E++ + P  EHYACM+DLL+R+G + +A+     
Sbjct: 718 VLTTLLSACSHAGLVDAGIKIFKSIREIHRVVPTAEHYACMVDLLARSGHIQDAYMFALD 777

Query: 618 MKIKP-NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDE 676
           M     NA  W +LLGAC++H  +++G++A  +L  +E      Y ++SN++A   +WD 
Sbjct: 778 MPPHAVNANAWSSLLGACKVHGKVEIGQLAAGRLFSMEGGDIGNYVIMSNIYAADEKWDG 837

Query: 677 VEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNT 734
           VE VR  M+    +K  GCSWIEV+   H F++ D      + I + L +L  QI++T
Sbjct: 838 VENVRKLMKSIDMKKPAGCSWIEVEKTRHLFIASDINHQDRSCIYDMLGSLYQQIKDT 895



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 161/721 (22%), Positives = 286/721 (39%), Gaps = 162/721 (22%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----- 105
           +++ AY + G + DA  LF++M + + V WN +I         ++A  LF  M       
Sbjct: 111 AVMDAYGRFGSLADALLLFDEMARPDAVCWNILITACSRRGLFEDAFILFRSMLSCGVGQ 170

Query: 106 --PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYN--- 157
             P   + A+++    +   L+  R +   +     + DT C NA+V+ YAK G      
Sbjct: 171 GMPTAVTVAVIVPACAKWRHLQTGRSVHCYVVKTGLESDTLCGNALVSMYAKCGGSRVMV 230

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDD 217
           +A +   ++  K++VSWNS+++GY +N     A   F  M  +        L  Y  +  
Sbjct: 231 DAHRAFSSIRCKDVVSWNSVIAGYIENQLFGEALALFSQMISQG------YLPNYSTVAS 284

Query: 218 LDSAWKF--FQKIPEQNVVSWVT-------------MLSGYARNGRMLEARRLFDQMPIR 262
           +     F  F +   + V S+V              +++ Y++   M +   +F  M +R
Sbjct: 285 ILPVCSFTEFGRHHGKEVHSFVVRHGMEIDVSVSNALMTHYSKVLEMKDVESIFTSMDVR 344

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
           ++V+WN +IA YV  G    A  LF     +  +S     D    I+ L    ++ D   
Sbjct: 345 DIVSWNTIIAGYVMNGYHHRALGLF-----QGLLSTGIAPDSVSFISLLTACAQVGD--- 396

Query: 323 YKNIAAQTAM-ISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
                 +T M + GY           IF +    +    N ++  Y+ C R D+A   F 
Sbjct: 397 -----VKTGMEVHGY-----------IFQRPVLQETSLMNALVTFYSHCDRFDDAFRAFT 440

Query: 382 QMVNKDIVTWNTMIAGYAQIRQ-MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
            ++NKD ++WN +++  A   Q ++    +  EM +  N   W+++    + N  H+   
Sbjct: 441 DILNKDSISWNAILSACATSEQHIEKFFVLMSEMCRGVNQCQWDSVT---VLNVIHMST- 496

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500
                                         +++ R+ H  +++ GY  +  V N+++  Y
Sbjct: 497 ---------------------------FCGIKMVREAHGWSLRVGYTGETSVANAILDAY 529

Query: 501 AKCGRIQNAELLFK------------------------DADPV-------DVISWNSLIA 529
            KCG   +A +LF+                        DA+ +       D+ SWN +I 
Sbjct: 530 VKCGYSHDASILFRNHAGRNIVTDNIMISCYLKSNCIEDAEVIFNHMAEKDLTSWNLMIQ 589

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV-------------------- 569
            YA N    +A  LF  +  EG+ PD V+   +L AC H+                    
Sbjct: 590 LYAQNDMDGQAFSLFNHLQSEGLKPDIVSIANILEACIHLCSVQLVRQCHAYMLRASLED 649

Query: 570 -----GLVDGGLKLFECMT--EVYAIEP---LVEHYACMIDLLSRAGRLDEAFEMVKGM- 618
                 LVD   K         ++ I P   LV  +  MI   +  G  +EA E+   M 
Sbjct: 650 IHLEGALVDAYSKCGNITNAYNIFQISPKKDLVT-FTAMIGCYAMHGMAEEAVELFSKML 708

Query: 619 --KIKPNAGIWGTLLGACR----MHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672
              I+P+  +  TLL AC     +   IK+ + ++ ++  + P     YA + ++ A +G
Sbjct: 709 KLDIRPDHVVLTTLLSACSHAGLVDAGIKIFK-SIREIHRVVPTAEH-YACMVDLLARSG 766

Query: 673 R 673
            
Sbjct: 767 H 767



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 124/304 (40%), Gaps = 48/304 (15%)

Query: 3   ASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRV 62
           AS+    + G  +   N  I+   KS  +E+A  IF+ M++K+  ++N MI  YA+N   
Sbjct: 538 ASILFRNHAGRNIVTDNIMISCYLKSNCIEDAEVIFNHMAEKDLTSWNLMIQLYAQNDMD 597

Query: 63  NDARKLFEQMPQRNL----VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCY 118
             A  LF  +    L    VS  +++   +H   V+  R+    M R  L          
Sbjct: 598 GQAFSLFNHLQSEGLKPDIVSIANILEACIHLCSVQLVRQCHAYMLRASL---------- 647

Query: 119 TRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSML 178
                              ED     A+V  Y+K GN   A  +    P K++V++ +M+
Sbjct: 648 -------------------EDIHLEGALVDAYSKCGNITNAYNIFQISPKKDLVTFTAMI 688

Query: 179 SGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
             Y  +G    A + F  M + D+    V    +L        +D+  K F+ I E + V
Sbjct: 689 GCYAMHGMAEEAVELFSKMLKLDIRPDHVVLTTLLSACSHAGLVDAGIKIFKSIREIHRV 748

Query: 235 -----SWVTMLSGYARNGRMLEARRLFDQMPIR--NVVAWNAMIAAYVQRGQIE----EA 283
                 +  M+   AR+G + +A      MP    N  AW++++ A    G++E     A
Sbjct: 749 VPTAEHYACMVDLLARSGHIQDAYMFALDMPPHAVNANAWSSLLGACKVHGKVEIGQLAA 808

Query: 284 ARLF 287
            RLF
Sbjct: 809 GRLF 812



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 6/128 (4%)

Query: 446 MTQEGKKADHSTLACALSACAHL--AALQLGRQIHHLAIKSGYV-NDLFVGNSLITMYAK 502
           M  EG +     LA A+ + + L  +   L R +H LA+K+G V +   V  +++  Y +
Sbjct: 59  MLGEGHRPGALELAAAIRSSSALPGSGSALARCLHGLAVKAGRVASSATVAKAVMDAYGR 118

Query: 503 CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA---PDPVTF 559
            G + +A LLF +    D + WN LI   +  G   +A  LF  M+  GV    P  VT 
Sbjct: 119 FGSLADALLLFDEMARPDAVCWNILITACSRRGLFEDAFILFRSMLSCGVGQGMPTAVTV 178

Query: 560 IGVLSACS 567
             ++ AC+
Sbjct: 179 AVIVPACA 186


>gi|449508249|ref|XP_004163262.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  341 bits (874), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 212/658 (32%), Positives = 333/658 (50%), Gaps = 93/658 (14%)

Query: 119 TRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSML 178
           ++ G +++AR+LFD +P + D   WN M++ YA +GN  EA+KL +  P  N ++W+S++
Sbjct: 48  SKNGRVDEARKLFDQMPYR-DKYTWNIMISAYANLGNLVEARKLFNETPIXNSITWSSLV 106

Query: 179 SGYTKNG----EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA---WKFFQKIP-E 230
           SGY KNG     +   S+ +   ++    +   +L     L  L +      +  KI  E
Sbjct: 107 SGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLE 166

Query: 231 QNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLFIE 289
            N+     ++  Y++   +LEA  LF  +P R N V W AM+  Y Q G+  +A + F E
Sbjct: 167 ANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKE 226

Query: 290 MP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK----NIAAQTAMISGYVQNKR 341
           M     E N  ++ +++     I+     R++   + +     N+  Q+A++  Y +   
Sbjct: 227 MRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGD 286

Query: 342 MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI------------- 388
           +  A  I D +   DVVCWN MI G    G M+EA+ LF +M N+DI             
Sbjct: 287 LASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKS 346

Query: 389 --------------------------VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
                                        N ++  YA+   +  A+ +F ++   ++ +S
Sbjct: 347 LASCKNLKIGESVHSLTIKTGFDACKTVSNALVDMYAKQGNLSCALDVFNKI-LDKDVIS 405

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482
           W +L++G++ N FH  AL++F  M       D   +AC  SACA L  ++ GRQ+H   I
Sbjct: 406 WTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVFSACAELTVIEFGRQVHANFI 465

Query: 483 KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIK 542
           KS   + L   NSLITMYAKCG +++A  +    +  +VISW ++I GYA NG       
Sbjct: 466 KSSAGSLLSAENSLITMYAKCGCLEDAIRVXDSMETRNVISWTAIIVGYAQNG------- 518

Query: 543 LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLL 602
                                       LV+ G   FE M +VY I+P  + YACMIDLL
Sbjct: 519 ----------------------------LVETGQSYFESMEKVYGIKPASDRYACMIDLL 550

Query: 603 SRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYA 662
            RAG+++EA  ++  M ++P+A IW +LL ACR+H N++LG  A + L +LEP  +  Y 
Sbjct: 551 GRAGKINEAEHLLNRMDVEPDATIWKSLLSACRVHGNLELGERAGKNLIKLEPSNSLPYV 610

Query: 663 LLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           LLSNM + AGRW++   +R +M+  G  ++PG SWIE+K+Q+HTF+S D      AEI
Sbjct: 611 LLSNMFSVAGRWEDAAHIRRAMKTMGIXQEPGYSWIEMKSQVHTFISEDRSHPLAAEI 668



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 154/320 (48%), Gaps = 35/320 (10%)

Query: 332 MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTW 391
           ++S   +N R+DEA ++FD++   D   WN+MI  YA  G + EA  LF +    + +TW
Sbjct: 43  LLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIXNSITW 102

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
           +++++GY                                 +N   ++ L+ F  M  +G+
Sbjct: 103 SSLVSGYC--------------------------------KNGCEVEGLRQFSQMWSDGQ 130

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE- 510
           K    TL   L AC+ L+ L  G+ IH  AIK     ++FV   L+ MY+KC  +  AE 
Sbjct: 131 KPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEY 190

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
           L F   D  + + W +++ GYA NG + +AI+ F+EM  +G+  +  TF  +L+AC+ + 
Sbjct: 191 LFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSIS 250

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
               G ++  C+       P V   + ++D+ ++ G L  A  ++  M+I  +   W ++
Sbjct: 251 AYAFGRQVHGCIIWS-GFGPNVYVQSALVDMYAKCGDLASARMILDTMEID-DVVCWNSM 308

Query: 631 LGACRMHQNIKLGRIAVEKL 650
           +  C  H  ++   +   K+
Sbjct: 309 IVGCVTHGYMEEALVLFHKM 328



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 6/120 (5%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS +  +N  IT   K G +E+AI++   M  +N +++ ++I  YA+NG V   +  FE 
Sbjct: 470 GSLLSAENSLITMYAKCGCLEDAIRVXDSMETRNVISWTAIIVGYAQNGLVETGQSYFES 529

Query: 72  MPQRNLVS-----WNSMIAGYLHNDKVKEARELFDKM-FRPDLFSWALMITCYTRKGELE 125
           M +   +      +  MI       K+ EA  L ++M   PD   W  +++     G LE
Sbjct: 530 MEKVYGIKPASDRYACMIDLLGRAGKINEAEHLLNRMDVEPDATIWKSLLSACRVHGNLE 589


>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
 gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
          Length = 857

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 217/727 (29%), Positives = 355/727 (48%), Gaps = 108/727 (14%)

Query: 110 SWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDA---- 165
           S AL   C    G+L +A  L +  P   D          Y  +    E ++ +DA    
Sbjct: 68  SAALRALC--SHGQLAQALWLLESSPEPPDEG-------AYVALFRLCEWRRAVDAGMRA 118

Query: 166 -------MPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDL 218
                   PS  +   N+MLS   + GE+  A + F  M ERDV SWN+M+ GY ++  L
Sbjct: 119 CARADAEHPSFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFL 178

Query: 219 DSAWKFFQKI------PEQNVVSWVTMLSG------------------------------ 242
           + A   + ++      P+      V    G                              
Sbjct: 179 EEALDLYYRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNAL 238

Query: 243 ---YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PER 293
              YA+ G ++ AR++FD M + + ++WNAMIA + +  + E    LF+ M      P  
Sbjct: 239 VTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNL 298

Query: 294 NPVSWTTMIDG---------------------------------YVRIAKLDEARRLLDQ 320
             ++  T+  G                                 Y  + ++ +A ++  +
Sbjct: 299 MTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSR 358

Query: 321 MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC----GRMDEA 376
           M  K+  + TAMISGY +N   D+A +++  +  H+V   +V I          GR+D  
Sbjct: 359 METKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVG 418

Query: 377 INLFRQMVNKDIVTW----NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
           I L     NK  + +    N ++  YA+ + +D A+++F+ M ++ + VSW+++I+GF  
Sbjct: 419 IKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEK-DVVSWSSMIAGFCF 477

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
           N    +AL  F  M     K +  T   ALSACA   AL+ G++IH   ++ G  ++ +V
Sbjct: 478 NHRSFEALYYFRYMLGH-VKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYV 536

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
            N+L+ +Y KCG+   A   F      DV+SWN +++G+  +G    A+ LF +MV  G 
Sbjct: 537 PNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGE 596

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
            PD VTF+ +L ACS  G+V  G +LF  MTE ++I P ++HYACM+DLLSR G+L EA+
Sbjct: 597 HPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAY 656

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672
            ++  M IKP+A +WG LL  CR+H++++LG +A + + ELEP   + + LL +++ +AG
Sbjct: 657 NLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDLYTDAG 716

Query: 673 RWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +W +V +VR +M   G ++  GCSW+EVK   H FL+ D    +  EI   L  +  +++
Sbjct: 717 KWAQVARVRKTMREKGLEQDNGCSWVEVKGVTHAFLTDDESHPQIKEINVVLHGIYERMK 776

Query: 733 NTPLAVI 739
               A +
Sbjct: 777 ACGFAPV 783



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 121/498 (24%), Positives = 217/498 (43%), Gaps = 101/498 (20%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----R 105
           N+M+S   + G +  A ++F +MP+R++ SWN M+ GY     ++EA +L+ +M     R
Sbjct: 135 NAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAGMR 194

Query: 106 PDLFSWALMI-TCYT----RKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
           PD++++  ++ TC      R G    A  L     ++ D    NA+V  YAK G+   A+
Sbjct: 195 PDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVL--NALVTMYAKCGDIVAAR 252

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER-------------------- 200
           K+ D M   + +SWN+M++G+ +N E     + F  M E                     
Sbjct: 253 KVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLS 312

Query: 201 -------------------DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
                              DV   N ++  Y  L  +  A K F ++  ++ +SW  M+S
Sbjct: 313 EVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMIS 372

Query: 242 GYARNGRMLEARRLFDQMP---------------------------------------IR 262
           GY +NG   +A  ++  M                                        IR
Sbjct: 373 GYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIR 432

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA----RRLL 318
            VV  NA++  Y +   I++A  +F  M E++ VSW++MI G+    +  EA    R +L
Sbjct: 433 YVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYML 492

Query: 319 DQMPYKNIAAQTAM----ISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMD 374
             +   ++    A+     +G +++ +   A  +   IG+   V  N ++  Y +CG+  
Sbjct: 493 GHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVP-NALLDLYVKCGQTS 551

Query: 375 EAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFE---EMGKRRNTVSWNALISGFL 431
            A   F     KD+V+WN M++G+      D A+ +F    EMG+  + V++ AL+    
Sbjct: 552 YAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACS 611

Query: 432 QNEFHLDALKIFVLMTQE 449
           +    +   ++F +MT++
Sbjct: 612 RAGMVIQGWELFHMMTEK 629



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 115/479 (24%), Positives = 206/479 (43%), Gaps = 69/479 (14%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----R 105
           N++++ YAK G +  ARK+F+ M   + +SWN+MIAG+  N + +   ELF  M     +
Sbjct: 236 NALVTMYAKCGDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQ 295

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKL 162
           P+L +   +        E+  A+E+      +    D A  N+++  Y  +G   +A K+
Sbjct: 296 PNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKI 355

Query: 163 LDAMPSKNIVSWNSMLSGYTKNG------------EMHLAS------------------- 191
              M +K+ +SW +M+SGY KNG            E+H  S                   
Sbjct: 356 FSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRL 415

Query: 192 ----KFFEAMEE----RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGY 243
               K  E  +     R VV  N +L+ Y +   +D A + F+ + E++VVSW +M++G+
Sbjct: 416 DVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGF 475

Query: 244 ARNGRMLEARRLFDQMPIR---NVVAWNAMIAAYVQRGQIEEAA-------RLFIEMPER 293
             N R  EA   F  M      N V + A ++A    G +           R  I     
Sbjct: 476 CFNHRSFEALYYFRYMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGY 535

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK-- 351
            P     ++D YV+  +   A         K++ +   M+SG+V +   D A  +F++  
Sbjct: 536 VP---NALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMV 592

Query: 352 -IGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNK-----DIVTWNTMIAGYAQIRQM 404
            +G H D V +  ++   ++ G + +   LF  M  K     ++  +  M+   +++ ++
Sbjct: 593 EMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKL 652

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGF-LQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
            +A  +   M  + +   W AL++G  +     L  L   V++  E     +  L C L
Sbjct: 653 TEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDL 711



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 154/324 (47%), Gaps = 29/324 (8%)

Query: 29  GRVEEAIKIFSQMSQKNTVTY----NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMI 84
           GR++  IK+      K  + Y    N+++  YAK+  ++ A ++F+ M ++++VSW+SMI
Sbjct: 413 GRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMI 472

Query: 85  AGYLHNDKVKEARELFDKMF---RPDLFSWALMITCYTRKGELEKARELFDLLPN---KE 138
           AG+  N +  EA   F  M    +P+  ++   ++     G L   +E+   +       
Sbjct: 473 AGFCFNHRSFEALYYFRYMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGS 532

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM- 197
           +    NA++  Y K G  + A         K++VSWN MLSG+  +G   +A   F  M 
Sbjct: 533 EGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMV 592

Query: 198 ---EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ-----NVVSWVTMLSGYARNGRM 249
              E  D V++  +L        +   W+ F  + E+     N+  +  M+   +R G++
Sbjct: 593 EMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKL 652

Query: 250 LEARRLFDQMPIR-NVVAWNAM-----IAAYVQRGQIEEAARLFIEMPERNPVSWTTMI- 302
            EA  L ++MPI+ +   W A+     I  +V+ G++  AA++ +E+ E N V++  ++ 
Sbjct: 653 TEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGEL--AAKVILEL-EPNDVAYHVLLC 709

Query: 303 DGYVRIAKLDEARRLLDQMPYKNI 326
           D Y    K  +  R+   M  K +
Sbjct: 710 DLYTDAGKWAQVARVRKTMREKGL 733



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 103/424 (24%), Positives = 180/424 (42%), Gaps = 81/424 (19%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I      GR+ +A KIFS+M  K+ +++ +MIS Y KNG  + A +++  M      
Sbjct: 337 NSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALME----- 391

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK- 137
                    LHN               PD  + A  +      G L+   +L +L  NK 
Sbjct: 392 ---------LHN-------------VSPDDVTIASALAACACLGRLDVGIKLHELAQNKG 429

Query: 138 --EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
                   NA++  YAK  + ++A ++   M  K++VSW+SM++G+  N     A  +F 
Sbjct: 430 FIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFR 489

Query: 196 AM-------------------------EERDVVSW-------------NLMLDGYVELDD 217
            M                           +++ ++             N +LD YV+   
Sbjct: 490 YMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQ 549

Query: 218 LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM----PIRNVVAWNAMIAA 273
              AW  F    E++VVSW  MLSG+  +G    A  LF+QM       + V + A++ A
Sbjct: 550 TSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCA 609

Query: 274 YVQRGQIEEAARLFIEMPER-----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYK-NIA 327
             + G + +   LF  M E+     N   +  M+D   R+ KL EA  L+++MP K + A
Sbjct: 610 CSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAA 669

Query: 328 AQTAMISGYVQNKRM---DEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
              A+++G   ++ +   + A ++  ++  +DV    ++   Y   G+  +   + + M 
Sbjct: 670 VWGALLNGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMR 729

Query: 385 NKDI 388
            K +
Sbjct: 730 EKGL 733



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 98/206 (47%), Gaps = 18/206 (8%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS  +  N  +    K G+   A   FS  S+K+ V++N M+S +  +G  + A  LF Q
Sbjct: 531 GSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQ 590

Query: 72  M----PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKG 122
           M       + V++ +++        V +  ELF  M       P+L  +A M+   +R G
Sbjct: 591 MVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVG 650

Query: 123 ELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNE-----AKKLLDAMPSKNIVSWNSM 177
           +L +A  L + +P K D A W A++ G  +I  + E     AK +L+  P  N V+++ +
Sbjct: 651 KLTEAYNLINRMPIKPDAAVWGALLNG-CRIHRHVELGELAAKVILELEP--NDVAYHVL 707

Query: 178 LSG-YTKNGEMHLASKFFEAMEERDV 202
           L   YT  G+    ++  + M E+ +
Sbjct: 708 LCDLYTDAGKWAQVARVRKTMREKGL 733


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 194/538 (36%), Positives = 285/538 (52%), Gaps = 48/538 (8%)

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIE 289
           EQN      +L  Y   GR+ EAR +FD +  ++  +WNAMIA YV+    E+A RLF E
Sbjct: 60  EQNAHVMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFRE 119

Query: 290 MPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPY----KNIAAQTAMISGYVQNKR 341
           M       N  ++  ++     ++ L   + +   + +     ++   TA++  Y +   
Sbjct: 120 MCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGS 179

Query: 342 MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM------------------ 383
           ++EA +IFD +  HD++ W VMI  YAQ G   EA  L  QM                  
Sbjct: 180 INEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNA 239

Query: 384 ---------------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
                                +  D+     ++  YA+   +DDA  +F+ M K R+ VS
Sbjct: 240 CASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRM-KVRDVVS 298

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482
           WN +I  F ++    +A  +F+ M  EG K D       L+ACA   AL+  ++IH  A+
Sbjct: 299 WNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHAL 358

Query: 483 KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIK 542
            SG   D+ VG +L+ MY+K G I +A ++F      +V+SWN++I+G A +G   +A++
Sbjct: 359 DSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALE 418

Query: 543 LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLL 602
           +F  M   GV PD VTF+ VLSACSH GLVD G   +  MT+VY IEP V H  CM+DLL
Sbjct: 419 VFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLL 478

Query: 603 SRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYA 662
            RAGRL EA   +  M + P+   WG LLG+CR + N++LG +  ++  +L+P+  + Y 
Sbjct: 479 GRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLDPKNAATYV 538

Query: 663 LLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           LLSN++AEAG+WD V  VR  M   G +K+PG SWIEV N+IH FL  D       EI
Sbjct: 539 LLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLVADSSHPECKEI 596



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/498 (23%), Positives = 243/498 (48%), Gaps = 44/498 (8%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V  +  K   L  + +V + I I S+M Q N    N+++  Y + GR+ +AR +F+ + +
Sbjct: 34  VLKRCLKQKDLMAAKQVHDCI-IKSRMEQ-NAHVMNNLLHVYIECGRLQEARCVFDALVK 91

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKAREL 130
           ++  SWN+MIAGY+ +   ++A  LF +M     +P+  ++ +++        L+  +E+
Sbjct: 92  KSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEV 151

Query: 131 FDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
              + +   + D     A++  Y K G+ NEA+++ D + + +I+SW  M+  Y ++G  
Sbjct: 152 HACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNG 211

Query: 188 HLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIP--------EQNVVS 235
             A +    ME+     + +++  +L+        + A K+ +++         E +V  
Sbjct: 212 KEAYRLMLQMEQEGFKPNAITYVSILNACAS----EGALKWVKRVHRHALDAGLELDVRV 267

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER-- 293
              ++  YA++G + +AR +FD+M +R+VV+WN MI A+ + G+  EA  LF++M     
Sbjct: 268 GTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGC 327

Query: 294 --NPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347
             + + + ++++       L+  +++    LD     ++   TA++  Y ++  +D+A  
Sbjct: 328 KPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARV 387

Query: 348 IFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQ 403
           +FD++   +VV WN MI G AQ G   +A+ +FR+M    V  D VT+  +++  +    
Sbjct: 388 VFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGL 447

Query: 404 MDDAVKIFEEM----GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
           +D+    +  M    G   +    N ++   L     L   K+F+         D +T  
Sbjct: 448 VDEGRSQYLAMTQVYGIEPDVSHCNCMVD-LLGRAGRLMEAKLFI--DNMAVDPDEATWG 504

Query: 460 CALSACAHLAALQLGRQI 477
             L +C     ++LG  +
Sbjct: 505 ALLGSCRTYGNVELGELV 522



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 127/278 (45%), Gaps = 42/278 (15%)

Query: 442 IFVLMT--QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
           I VLM   Q G   D       L  C     L   +Q+H   IKS    +  V N+L+ +
Sbjct: 13  IVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHV 72

Query: 500 YAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTF 559
           Y +CGR+Q A  +F         SWN++IAGY  + +A +A++LF EM  EGV P+  T+
Sbjct: 73  YIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTY 132

Query: 560 IGVLSACS-----------HVGLVDGGL----KLFECMTEVYA-----------IEPLVE 593
           + +L AC+           H  +  GGL    ++   +  +Y             + L+ 
Sbjct: 133 MIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMN 192

Query: 594 H----YACMIDLLSRAGRLDEAFEMVKGMK---IKPNAGIWGTLLGACRMHQNIK----L 642
           H    +  MI   +++G   EA+ ++  M+    KPNA  + ++L AC     +K    +
Sbjct: 193 HDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRV 252

Query: 643 GRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKV 680
            R A++   EL+ +  +    L  M+A++G  D+   V
Sbjct: 253 HRHALDAGLELDVRVGTA---LVQMYAKSGSIDDARVV 287



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 139/313 (44%), Gaps = 55/313 (17%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP----QRNL 77
           +    KSG +++A  +F +M  ++ V++N MI A+A++GR ++A  LF QM     + + 
Sbjct: 272 VQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDA 331

Query: 78  VSWNSMI-----AGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD 132
           + + S++     AG L   K K  R   D     D+     ++  Y++ G ++ AR +FD
Sbjct: 332 IMFLSILNACASAGALEWVK-KIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFD 390

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMH 188
            +  + +   WNAM++G A+ G   +A ++   M +  +    V++ ++LS  +  G + 
Sbjct: 391 RMKVR-NVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVD 449

Query: 189 LASKFFEAME-----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGY 243
                + AM      E DV   N M+D                             L G 
Sbjct: 450 EGRSQYLAMTQVYGIEPDVSHCNCMVD-----------------------------LLG- 479

Query: 244 ARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEA---ARLFIEMPERNPVSWT 299
            R GR++EA+   D M +  +   W A++ +    G +E     A+  +++  +N  ++ 
Sbjct: 480 -RAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLDPKNAATYV 538

Query: 300 TMIDGYVRIAKLD 312
            + + Y    K D
Sbjct: 539 LLSNIYAEAGKWD 551


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 181/478 (37%), Positives = 274/478 (57%), Gaps = 18/478 (3%)

Query: 270 MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGY----VRIAKLDEARRLL------- 318
           M+       + E A  LF  + + N   +  MI  Y    V +  +   +++L       
Sbjct: 52  MVDVCNHHAETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGEN 111

Query: 319 ----DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMD 374
               D+  +  +    A +  Y   K++     +F      + V  N +++ Y +C  +D
Sbjct: 112 PIFPDKFTFPFVVKSCAGLMCYDLGKQVH--GHVFKFGQKSNTVVENSLVEMYVKCDSLD 169

Query: 375 EAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
           +A  +F +M  +D V+WNT+I+G+ ++ QM  A  IFEEM + +   SW A++SG+ +  
Sbjct: 170 DAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEM-QDKTIFSWTAIVSGYARIG 228

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN 494
            + DAL+ F  M   G + D  +L   L ACA L AL+LG+ IH  A K+G++ ++ V N
Sbjct: 229 CYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCN 288

Query: 495 SLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP 554
           +LI MYAKCG I     LF   +  DVISW+++I G A +G A EAI+LF+EM    + P
Sbjct: 289 ALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEP 348

Query: 555 DPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEM 614
           + +TF+G+LSAC+H GL++ GL+ FE M   Y IEP VEHY C+++LL  +GRLD+A E+
Sbjct: 349 NIITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALEL 408

Query: 615 VKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRW 674
           +K M +KP++ IWG+LL +CR H N+++  IA+E L ELEP  T  Y LLSN++A+ G+W
Sbjct: 409 IKKMPMKPDSAIWGSLLSSCRSHSNLEIAVIAMEHLLELEPADTGNYVLLSNLYADLGKW 468

Query: 675 DEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           D V ++R  M     +K PGCS IEV N +  F SGD  +  +  I   LK L    R
Sbjct: 469 DGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFASGDDSKPFSKAIYRVLKLLVMHQR 526



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 143/283 (50%), Gaps = 17/283 (6%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           +F    + NTV  NS++  Y K   ++DA K+FE+M +R+ VSWN++I+G++   +++ A
Sbjct: 143 VFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRA 202

Query: 97  RELFDKMFRPDLFSWALMITCYTRKGELEKARELF---DLLPNKEDTACWNAMVAGYAKI 153
           R +F++M    +FSW  +++ Y R G    A E F    ++  + D     +++   A++
Sbjct: 203 RAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQL 262

Query: 154 GNYNEAKKLL----DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML 209
           G     K +      A   +NI   N+++  Y K G +    + F+ M ERDV+SW+ M+
Sbjct: 263 GALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMI 322

Query: 210 DGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR--- 262
            G         A + FQ++     E N++++V +LS  A  G + E  R F+ M      
Sbjct: 323 VGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYNI 382

Query: 263 --NVVAWNAMIAAYVQRGQIEEAARLFIEMPER-NPVSWTTMI 302
              V  +  ++      G++++A  L  +MP + +   W +++
Sbjct: 383 EPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLL 425



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 79/352 (22%), Positives = 169/352 (48%), Gaps = 21/352 (5%)

Query: 8   IGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARK 67
            G K + V  +N  +    K   +++A K+F +M++++ V++N++IS + + G++  AR 
Sbjct: 146 FGQKSNTVV-ENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARA 204

Query: 68  LFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGE 123
           +FE+M  + + SW ++++GY       +A E F +M      PD  S   ++    + G 
Sbjct: 205 IFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGA 264

Query: 124 LEKARELF---DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG 180
           LE  + +    D      +    NA++  YAK G+ +E ++L D M  ++++SW++M+ G
Sbjct: 265 LELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVG 324

Query: 181 YTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-----EQ 231
              +G  H A + F+ M+    E +++++  +L        L+   ++F+ +      E 
Sbjct: 325 LANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEP 384

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLFIEM 290
            V  +  +++    +GR+ +A  L  +MP++ +   W +++++      +E A      +
Sbjct: 385 GVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNLEIAVIAMEHL 444

Query: 291 PERNPV---SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQN 339
            E  P    ++  + + Y  + K D   R+   M  K++       S  V N
Sbjct: 445 LELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDN 496



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 163/374 (43%), Gaps = 62/374 (16%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM--- 72
           F   K +         E A  +F +++  N   YN+MI AY  N     A  +++QM   
Sbjct: 47  FLVTKMVDVCNHHAETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGH 106

Query: 73  --------PQR---------------------------------NLVSWNSMIAGYLHND 91
                   P +                                 N V  NS++  Y+  D
Sbjct: 107 SHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCD 166

Query: 92  KVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYA 151
            + +A ++F++M   D  SW  +I+ + R G++ +AR +F+ + +K     W A+V+GYA
Sbjct: 167 SLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKT-IFSWTAIVSGYA 225

Query: 152 KIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLAS--KFF--EAMEERDVV 203
           +IG Y +A +    M    I    +S  S+L    + G + L     F+  +A   R++ 
Sbjct: 226 RIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNIC 285

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR- 262
             N +++ Y +   +D   + F ++ E++V+SW TM+ G A +GR  EA  LF +M    
Sbjct: 286 VCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAK 345

Query: 263 ---NVVAWNAMIAAYVQRGQIEEAARLFIEMP-----ERNPVSWTTMIDGYVRIAKLDEA 314
              N++ +  +++A    G + E  R F  M      E     +  +++      +LD+A
Sbjct: 346 IEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQA 405

Query: 315 RRLLDQMPYKNIAA 328
             L+ +MP K  +A
Sbjct: 406 LELIKKMPMKPDSA 419



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 114/229 (49%), Gaps = 42/229 (18%)

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
           N V  N+++  YV+   +++A ++F EM ER+ VSW T+I G+VR+ ++  AR + ++M 
Sbjct: 151 NTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQ 210

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIF--------------------------------- 349
            K I + TA++SGY +     +A + F                                 
Sbjct: 211 DKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKW 270

Query: 350 -----DKIGTHDVVC-WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQ 403
                DK G    +C  N +I+ YA+CG +DE   LF QM  +D+++W+TMI G A   +
Sbjct: 271 IHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGR 330

Query: 404 MDDAVKIFEEMGKRR---NTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
             +A+++F+EM K +   N +++  L+S         + L+ F  M ++
Sbjct: 331 AHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFESMKRD 379


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 202/613 (32%), Positives = 327/613 (53%), Gaps = 48/613 (7%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N ++  YAK  N  +A K+ + +P  ++ SW  ++SG+ + G        F  M+++ V 
Sbjct: 325 NHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVC 384

Query: 204 SWNLMLDGYVELDDLDS------------AWKFFQKIPEQNVVSWVTMLSGYARNGRMLE 251
                L   + L    S             W     +    V++  ++L  Y +      
Sbjct: 385 PNQFTLS--IVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLN-NSILDYYVKCRCFGY 441

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKL 311
           A +LF  M  ++ V+WN M+++Y+Q G ++++  LF ++P ++  SW TMIDG +R    
Sbjct: 442 AEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMR---- 497

Query: 312 DEARRLLDQMPYKNIAAQTAM------ISGYVQNKR--MDEANQIFD---KIGT-HDVVC 359
           +   R+  ++ YK +AA  A       I+  + +    +    QI     K+G   D   
Sbjct: 498 NGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFV 557

Query: 360 WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRN 419
            N +I  Y +CG M++A  +F+ +  +     ++M+         DDAV           
Sbjct: 558 RNSLIDMYCKCGEMEKASVIFKHLPQE-----SSMMNSE---ESCDDAVV---------E 600

Query: 420 TVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHH 479
           +VSW++++SG++QN    DALK F  M     + D  TL   +SACA    L+LGRQ+H 
Sbjct: 601 SVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHG 660

Query: 480 LAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATE 539
              K G+  D+F+G+S+I MY KCG + +A L+F  A   +V+ W S+I+G A++G   E
Sbjct: 661 YIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGRE 720

Query: 540 AIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMI 599
           A++LFE M+ EG+ P+ V+F+GVL+ACSH GL++ G K F  M EVY I P  EH+ CM+
Sbjct: 721 AVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMV 780

Query: 600 DLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTS 659
           DL  RAGRL+E  E +    I   + +W + L +CR+H+NI++G    +KL ELEP    
Sbjct: 781 DLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLELEPFDAG 840

Query: 660 CYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAE 719
            Y L S++ A   RW+E  K+R  M+  G +K P  SWI++KNQ+H+F+ GD    +  +
Sbjct: 841 PYILFSSICATEHRWEEAAKIRSLMQQRGVKKNPSQSWIQLKNQVHSFVMGDRSHPQDTK 900

Query: 720 ICNTLKTLAAQIR 732
           I + L  L  +++
Sbjct: 901 IYSYLDELIGRLK 913



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 126/565 (22%), Positives = 246/565 (43%), Gaps = 82/565 (14%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           N +++ YAK+  +  A K+FE++PQ ++ SW  +I+G+       +   LF KM      
Sbjct: 325 NHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVC 384

Query: 106 PDLFSWALMI-TCYTRKGELEKARELFD-LLPN--KEDTACWNAMVAGYAKIGNYNEAKK 161
           P+ F+ ++++ +C +   +    + +   +L N    D    N+++  Y K   +  A+K
Sbjct: 385 PNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEK 444

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV----ELDD 217
           L   M  K+ VSWN M+S Y + G+M  +   F  +  +D  SWN M+DG +    E   
Sbjct: 445 LFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVA 504

Query: 218 LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV----AWNAMIAA 273
           L+  +K     P  N +++   L   +    +   +++  Q+    V+      N++I  
Sbjct: 505 LELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDM 564

Query: 274 YVQRGQIEEAARLFIEMPERN---------------PVSWTTMIDGYVRIAKLDEARRLL 318
           Y + G++E+A+ +F  +P+ +                VSW++M+ GYV+  + ++A +  
Sbjct: 565 YCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTF 624

Query: 319 DQMPYKNIAAQ----TAMISGYVQNKRMDEANQI---FDKIGTH-DVVCWNVMIKGYAQC 370
             M    +       T+++S       ++   Q+     KIG   DV   + +I  Y +C
Sbjct: 625 SFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKC 684

Query: 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
           G +++A  +F Q  ++++V W +MI+G A   Q  +AV++FE                  
Sbjct: 685 GSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFE------------------ 726

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL-----AIKSG 485
                         LM  EG   +  +    L+AC+H   L+ G +   L      I+ G
Sbjct: 727 --------------LMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPG 772

Query: 486 YVNDLFVGNSLITMYAKCGRIQN-AELLFKDADPVDVISWNSLIAGYAINGNATEAIKLF 544
             +       ++ +Y + GR+    E +  +A       W S ++   ++ N    I + 
Sbjct: 773 AEHF----TCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWVC 828

Query: 545 EEMV-MEGVAPDPVTFIGVLSACSH 568
           ++++ +E     P      + A  H
Sbjct: 829 KKLLELEPFDAGPYILFSSICATEH 853



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 161/355 (45%), Gaps = 70/355 (19%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKV 93
           A K+F  M++K+TV++N M+S+Y + G +  +  LF Q+P ++  SWN+MI G + N   
Sbjct: 442 AEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCE 501

Query: 94  KEARELFDKM------FRPDLFSWAL---------------------------------M 114
           + A EL  KM      F    FS AL                                 +
Sbjct: 502 RVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSL 561

Query: 115 ITCYTRKGELEKARELFDLLPNKE--------------DTACWNAMVAGYAKIGNYNEAK 160
           I  Y + GE+EKA  +F  LP +               ++  W++MV+GY + G + +A 
Sbjct: 562 IDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDAL 621

Query: 161 KLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASKFFEAMEE----RDVVSWNLMLDGY 212
           K    M    +     +  S++S     G + L  +    +++     DV   + ++D Y
Sbjct: 622 KTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMY 681

Query: 213 VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM----PIRNVVAWN 268
           V+   L+ AW  F +  ++NVV W +M+SG A +G+  EA RLF+ M       N V++ 
Sbjct: 682 VKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFV 741

Query: 269 AMIAAYVQRGQIEEAARLFIEMPERNPV-----SWTTMIDGYVRIAKLDEARRLL 318
            ++ A    G +EE  + F  M E   +      +T M+D Y R  +L+E +  +
Sbjct: 742 GVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFI 796



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 2/91 (2%)

Query: 477 IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGN 536
           +H   IK+G V     GN L+ +YAK   ++ A  +F++    DV SW  LI+G+A  G 
Sbjct: 310 LHAKLIKNGCVG--IRGNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGL 367

Query: 537 ATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
           + + + LF +M  +GV P+  T   VL +CS
Sbjct: 368 SADVLGLFTKMQDQGVCPNQFTLSIVLKSCS 398



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 10/135 (7%)

Query: 5   LKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND 64
           ++ IG+ G  VF  +  I    K G + +A  IF+Q   +N V + SMIS  A +G+  +
Sbjct: 662 IQKIGH-GLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGRE 720

Query: 65  ARKLFEQMPQR----NLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMI 115
           A +LFE M       N VS+  ++    H   ++E  + F  M      RP    +  M+
Sbjct: 721 AVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMV 780

Query: 116 TCYTRKGELEKAREL 130
             Y R G L + +E 
Sbjct: 781 DLYGRAGRLNEIKEF 795


>gi|359497527|ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Vitis vinifera]
 gi|296083555|emb|CBI23551.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 171/434 (39%), Positives = 268/434 (61%), Gaps = 4/434 (0%)

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
            A++  Y + G +E A ++F EM ERN VSW +M+ GY++   L  A+R+ D++P K++ 
Sbjct: 147 TALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVI 206

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD 387
           +  +MISGY +   M++A  +F ++   +   WN MI GY + G +D A + F  M  ++
Sbjct: 207 SWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDSARSFFDAMPQRN 266

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF--VL 445
            V+W TMI+GY++   +D A ++F+++G + + + +NA+I+ + QN    +ALK+F  +L
Sbjct: 267 NVSWMTMISGYSKCGDVDSACELFDQVGGK-DLLLFNAMIACYAQNSRPKEALKLFNNML 325

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
                 + D  TLA  +SAC+ L  L+ G  I     + G   D  +  +L+ +YAKCG 
Sbjct: 326 NPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGS 385

Query: 506 IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565
           I  A  LF      D++++ ++I G  ING A +AIKLF+EMV   + P+ +TFIG+L+A
Sbjct: 386 IDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTA 445

Query: 566 CSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAG 625
            +H GLV+ G   F  M + Y + P V+HY  M+DL  RAGRL EA E++K M ++P+AG
Sbjct: 446 YNHAGLVEEGYHCFTSMKK-YNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAG 504

Query: 626 IWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685
           +WG LL ACR+H N++ G IA +   ELEP  T   +LLSN++A   RWD+V+++R   +
Sbjct: 505 VWGALLLACRLHNNVEFGEIAAQHCFELEPDTTGYCSLLSNIYASGERWDDVKRLRKVTK 564

Query: 686 GSGAQKQPGCSWIE 699
             G  K PGCSW+E
Sbjct: 565 EKGFSKIPGCSWME 578



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 138/502 (27%), Positives = 239/502 (47%), Gaps = 68/502 (13%)

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDA 165
           PD FSWA  I   T+ G+    +E F L    +    W    A             L  A
Sbjct: 68  PDSFSWACAIRFSTQHGQF---KEAFALYVQMQRWGLWPTTFA-------------LSSA 111

Query: 166 MPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFF 225
           + +   +++   + G + +G++    KF  +     +     ++D Y +L D++ A K F
Sbjct: 112 LKACARIAYR--MGGLSIHGQVQ---KFGFSGGGDGIYVETALVDFYCKLGDMEIARKMF 166

Query: 226 QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAAR 285
            ++ E+NVVSW +ML+GY ++G ++ A+R+FD++P ++V++WN+MI+ Y + G +E+A  
Sbjct: 167 DEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKALS 226

Query: 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
           LF +MPERN  SW  MI GYV    +D AR   D MP +N  +   MISGY +   +D A
Sbjct: 227 LFQQMPERNFASWNAMISGYVEFGDIDSARSFFDAMPQRNNVSWMTMISGYSKCGDVDSA 286

Query: 346 NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI------VTWNTMIAG-- 397
            ++FD++G  D++ +N MI  YAQ  R  EA+ LF  M+N D+      +T  ++I+   
Sbjct: 287 CELFDQVGGKDLLLFNAMIACYAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACS 346

Query: 398 ---------------------------------YAQIRQMDDAVKIFEEMGKRRNTVSWN 424
                                            YA+   +D A ++F  + ++++ V++ 
Sbjct: 347 QLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGL-RKKDLVAYT 405

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
           A+I G   N   +DA+K+F  M       +  T    L+A  H   ++ G        K 
Sbjct: 406 AMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYHCFTSMKKY 465

Query: 485 GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS--WNSLIAGYAINGNATEAIK 542
             V  +     ++ ++ + GR+Q A  L K   P+   +  W +L+    ++ N  E  +
Sbjct: 466 NLVPSVDHYGIMVDLFGRAGRLQEALELIKSM-PMQPHAGVWGALLLACRLHNN-VEFGE 523

Query: 543 LFEEMVMEGVAPDPVTFIGVLS 564
           +  +   E + PD   +  +LS
Sbjct: 524 IAAQHCFE-LEPDTTGYCSLLS 544



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/379 (29%), Positives = 193/379 (50%), Gaps = 31/379 (8%)

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTR----------KGEL 124
           SW   I     + + KEA  L+ +M R    P  F+ +  +    R           G++
Sbjct: 72  SWACAIRFSTQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIAYRMGGLSIHGQV 131

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
           +K    F      +      A+V  Y K+G+   A+K+ D M  +N+VSWNSML+GY K+
Sbjct: 132 QK----FGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKS 187

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYA 244
           G++ +A + F+ + ++DV+SWN M+ GY    D++ A   FQ++PE+N  SW  M+SGY 
Sbjct: 188 GDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYV 247

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDG 304
             G +  AR  FD MP RN V+W  MI+ Y + G ++ A  LF ++  ++ + +  MI  
Sbjct: 248 EFGDIDSARSFFDAMPQRNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIAC 307

Query: 305 YVRIAKLDEARRLLDQMPYKNIAAQ------TAMISGYVQNKRMDEANQI---FDKIGTH 355
           Y + ++  EA +L + M   ++  Q       ++IS   Q   +     I     ++G  
Sbjct: 308 YAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIE 367

Query: 356 -DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            D      ++  YA+CG +D+A  LF  +  KD+V +  MI G     +  DA+K+F+EM
Sbjct: 368 MDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEM 427

Query: 415 GKRR---NTVSWNALISGF 430
              +   N++++  L++ +
Sbjct: 428 VDAQIFPNSITFIGLLTAY 446



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 185/365 (50%), Gaps = 52/365 (14%)

Query: 7   SIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDAR 66
           S G  G YV  +   +    K G +E A K+F +M+++N V++NSM++ Y K+G +  A+
Sbjct: 137 SGGGDGIYV--ETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQ 194

Query: 67  KLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEK 126
           ++F+++PQ++++SWNSMI+GY     +++A  LF +M   +  SW  MI+ Y   G+++ 
Sbjct: 195 RVFDEIPQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDS 254

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           AR  FD +P + + + W  M++GY+K G+ + A +L D +  K+++ +N+M++ Y +N  
Sbjct: 255 ARSFFDAMPQRNNVS-WMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSR 313

Query: 187 MHLASKFFEAMEERDV------------------------VSW----------------- 205
              A K F  M   DV                          W                 
Sbjct: 314 PKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLA 373

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP----I 261
             +LD Y +   +D A++ F  + ++++V++  M+ G   NG+ ++A +LFD+M      
Sbjct: 374 TALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIF 433

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS----WTTMIDGYVRIAKLDEARRL 317
            N + +  ++ AY   G +EE    F  M + N V     +  M+D + R  +L EA  L
Sbjct: 434 PNSITFIGLLTAYNHAGLVEEGYHCFTSMKKYNLVPSVDHYGIMVDLFGRAGRLQEALEL 493

Query: 318 LDQMP 322
           +  MP
Sbjct: 494 IKSMP 498



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 175/380 (46%), Gaps = 54/380 (14%)

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSW--TTMIDGYVRIAKLDEARRLLDQM 321
           +W   I    Q GQ +EA  L+++M      P ++  ++ +    RIA       +  Q+
Sbjct: 72  SWACAIRFSTQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIAYRMGGLSIHGQV 131

Query: 322 PY-------KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMD 374
                      I  +TA++  Y +   M+ A ++FD++   +VV WN M+ GY + G + 
Sbjct: 132 QKFGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLV 191

Query: 375 EAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
            A  +F ++  KD+++WN+MI+GYA+   M+ A+ +F++M   RN  SWNA+ISG+++  
Sbjct: 192 VAQRVFDEIPQKDVISWNSMISGYARAGDMEKALSLFQQM-PERNFASWNAMISGYVEFG 250

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN 494
               A   F  M Q    +                                         
Sbjct: 251 DIDSARSFFDAMPQRNNVS---------------------------------------WM 271

Query: 495 SLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME--GV 552
           ++I+ Y+KCG + +A  LF      D++ +N++IA YA N    EA+KLF  M+     V
Sbjct: 272 TMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPKEALKLFNNMLNPDVNV 331

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
            PD +T   V+SACS +G +  G    E       IE        ++DL ++ G +D+A+
Sbjct: 332 QPDEMTLASVISACSQLGDLRFG-PWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAY 390

Query: 613 EMVKGMKIKPNAGIWGTLLG 632
           E+  G++ K        +LG
Sbjct: 391 ELFHGLRKKDLVAYTAMILG 410



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 173/358 (48%), Gaps = 58/358 (16%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  I+   ++G +E+A+ +F QM ++N  ++N+MIS Y + G ++ AR  F+ MPQ
Sbjct: 205 VISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDSARSFFDAMPQ 264

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN VSW +MI+GY     V  A ELFD++   DL  +  MI CY +    ++A +LF+ +
Sbjct: 265 RNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPKEALKLFNNM 324

Query: 135 PNKE-------------DTAC----------W-----------------NAMVAGYAKIG 154
            N +              +AC          W                  A++  YAK G
Sbjct: 325 LNPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCG 384

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLD 210
           + ++A +L   +  K++V++ +M+ G   NG+   A K F+ M +  +    +++  +L 
Sbjct: 385 SIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLT 444

Query: 211 GYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIR-NVV 265
            Y     ++  +  F  + + N+V  V     M+  + R GR+ EA  L   MP++ +  
Sbjct: 445 AYNHAGLVEEGYHCFTSMKKYNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAG 504

Query: 266 AWNAMIAAY-----VQRGQIEEAARLFIEMPERNPVSWTTMIDG-YVRIAKLDEARRL 317
            W A++ A      V+ G+I  AA+   E+ E +   + +++   Y    + D+ +RL
Sbjct: 505 VWGALLLACRLHNNVEFGEI--AAQHCFEL-EPDTTGYCSLLSNIYASGERWDDVKRL 559



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 87/172 (50%), Gaps = 7/172 (4%)

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
           K  ++ SW   I    Q+    +A  ++V M + G       L+ AL ACA +A    G 
Sbjct: 66  KSPDSFSWACAIRFSTQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIAYRMGGL 125

Query: 476 QIHHLAIKSGYV---NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYA 532
            IH    K G+    + ++V  +L+  Y K G ++ A  +F +    +V+SWNS++AGY 
Sbjct: 126 SIHGQVQKFGFSGGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYL 185

Query: 533 INGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
            +G+   A ++F+E+  +    D +++  ++S  +  G ++  L LF+ M E
Sbjct: 186 KSGDLVVAQRVFDEIPQK----DVISWNSMISGYARAGDMEKALSLFQQMPE 233


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 184/526 (34%), Positives = 287/526 (54%), Gaps = 36/526 (6%)

Query: 215 LDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM------PIRNVVAWN 268
           L+ +D A   FQ+   +N   +  ++ G A N R   +   F  M      P R    + 
Sbjct: 87  LNSVDYAISIFQRFELKNSYLFNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFV 146

Query: 269 AMIAAYVQRGQIEEAARLFIEM--PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
              AA +  G +  A    I     E +     +++D YV++ +L  A ++ D+ P    
Sbjct: 147 LKSAAALSNGGVGRALHCGILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESP---- 202

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
                                  + +    V+ WNV+I GY + G + +A  LF  M  K
Sbjct: 203 -----------------------ESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMPKK 239

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446
           D  +WN++I G+ ++  M  A ++F +M   +N VSW  +++GF QN     AL+ F  M
Sbjct: 240 DTGSWNSLINGFMKMGDMGRAKELFVKM-PEKNVVSWTTMVNGFSQNGDPEKALETFFCM 298

Query: 447 TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI 506
            +EG + +  T+  ALSACA + AL  G +IH+    +G+  +L +G +L+ MYAKCG I
Sbjct: 299 LEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNI 358

Query: 507 QNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
           ++AE +F +     ++ W+ +I G+AI+G+  +A++ FE M   G  PD V F+ VL+AC
Sbjct: 359 EHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNAC 418

Query: 567 SHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGI 626
           SH G V+ GLK F+ M   Y IEP ++HY  ++D+L RAGRLDEA + ++ M I P+  +
Sbjct: 419 SHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVV 478

Query: 627 WGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEG 686
           WG L  ACR H+N+++  +A +KL +LEP+    Y  LSN +A  GRWD+ E+VRVSM  
Sbjct: 479 WGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGRWDDAERVRVSMRD 538

Query: 687 SGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            GA K PG S+IEV +++H F++GD    R  EI + L  ++A  R
Sbjct: 539 HGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDEISASAR 584



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/414 (25%), Positives = 192/414 (46%), Gaps = 33/414 (7%)

Query: 15  VFNQNKKITQLGKS----GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFE 70
           VF+ ++ +TQ   S      V+ AI IF +   KN+  +N++I   A+N R   +   F 
Sbjct: 70  VFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAENSRFESSISFFV 129

Query: 71  QM------PQRNLVSWNSMIAGYLHNDKVKEARE--LFDKMFRPDLFSWALMITCYTRKG 122
            M      P R    +    A  L N  V  A    +       D F    ++  Y +  
Sbjct: 130 LMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFDSFVRVSLVDMYVKVE 189

Query: 123 ELEKARELFDLLPNKEDTAC---WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLS 179
           EL  A ++FD  P          WN ++ GY ++G+  +A +L D+MP K+  SWNS+++
Sbjct: 190 ELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMPKKDTGSWNSLIN 249

Query: 180 GYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVS 235
           G+ K G+M  A + F  M E++VVSW  M++G+ +  D + A + F  + E+    N  +
Sbjct: 250 GFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDYT 309

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
            V+ LS  A+ G +    R+ + +       N+V   A++  Y + G IE A ++F E  
Sbjct: 310 IVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVFHETK 369

Query: 292 ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQ 347
           E+  + W+ MI G+       +A +  + M +      +    A+++    + +++E  +
Sbjct: 370 EKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVNEGLK 429

Query: 348 IFDKIGTHDVV-----CWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMI 395
            FD +    ++      + +++    + GR+DEA+   R M +  D V W  + 
Sbjct: 430 FFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGALF 483



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 156/315 (49%), Gaps = 20/315 (6%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           + G + +A ++F  M +K+T ++NS+I+ + K G +  A++LF +MP++N+VSW +M+ G
Sbjct: 222 RMGDLVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNG 281

Query: 87  YLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDLLPN---KED 139
           +  N   ++A E F  M     RP+ ++    ++   + G L+    + + L     K +
Sbjct: 282 FSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLN 341

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME- 198
                A+V  YAK GN   A+K+      K ++ W+ M+ G+  +G    A ++FE M+ 
Sbjct: 342 LVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKF 401

Query: 199 ---ERDVVSWNLMLDGYVELDDLDSAWKFFQK-----IPEQNVVSWVTMLSGYARNGRML 250
              + D V +  +L+       ++   KFF       + E ++  +  ++    R GR+ 
Sbjct: 402 TGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLD 461

Query: 251 EARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEE---AARLFIEMPERNPVSWTTMIDGYV 306
           EA +    MPI  + V W A+  A      +E    A++  +++  ++P S+  + + Y 
Sbjct: 462 EALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYA 521

Query: 307 RIAKLDEARRLLDQM 321
            + + D+A R+   M
Sbjct: 522 SVGRWDDAERVRVSM 536



 Score = 48.5 bits (114), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 104/256 (40%), Gaps = 26/256 (10%)

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
           RQIH    +    +   V    I+  +    +  A  +F+  +  +   +N+LI G A N
Sbjct: 59  RQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAEN 118

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGL-KLFECMTEVYAIE---- 589
                +I  F  M+   ++PD +TF  VL + +   L +GG+ +   C    + +E    
Sbjct: 119 SRFESSISFFVLMLKWKISPDRLTFPFVLKSAA--ALSNGGVGRALHCGILKFGLEFDSF 176

Query: 590 ---PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL-GACRMHQNIKLGRI 645
               LV+ Y  + +L S     DE+ E VK   +     IW  L+ G CRM   +K    
Sbjct: 177 VRVSLVDMYVKVEELGSALKVFDESPESVKNGSVL----IWNVLIHGYCRMGDLVK---- 228

Query: 646 AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705
           A E    +  + T  +  L N   + G     +++ V M      ++   SW  + N   
Sbjct: 229 ATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKM-----PEKNVVSWTTMVNGFS 283

Query: 706 TFLSGDPKQCRTAEIC 721
              +GDP++      C
Sbjct: 284 Q--NGDPEKALETFFC 297


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 203/642 (31%), Positives = 329/642 (51%), Gaps = 87/642 (13%)

Query: 177 MLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV--- 233
           ++S + + G +  A++ FE ++++  V +  ML G+ ++ DLD A KFF ++ +  V   
Sbjct: 75  LVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPV 134

Query: 234 ---VSWVTMLSG---------------------------------YARNGRMLEARRLFD 257
               +++  + G                                 YA+  ++ EAR++FD
Sbjct: 135 VYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFD 194

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN-------------PVSW------ 298
           +MP R++V+WN ++A Y Q G    A  +   M E N              VS       
Sbjct: 195 RMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRI 254

Query: 299 --------------------TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
                               T ++D Y +   L  AR L D M  +N+ +  +MI  YVQ
Sbjct: 255 GKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQ 314

Query: 339 NKRMDEANQIFDKIGTHDVVCWNVMIKGY----AQCGRMDEAINLFRQMV----NKDIVT 390
           N+   EA  IF K+    V   +V + G     A  G ++    + +  V    ++++  
Sbjct: 315 NENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSV 374

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
            N++I+ Y + +++D A  +F ++ + R  VSWNA+I GF QN   ++AL  F  M    
Sbjct: 375 VNSLISMYCKCKEVDTAASMFGKL-QSRTIVSWNAMILGFAQNGRPIEALNYFSQMQART 433

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
            K D  T    ++A A L+     + IH + +++    ++FV  +L+ MYAKCG I  A 
Sbjct: 434 VKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIAR 493

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
           L+F       V +WN++I GY  +G    A++LFEEM    + P+ VTF+ V+SACSH G
Sbjct: 494 LIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSG 553

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
           LV+ GLK F  M E Y+IEP ++HY  M+DLL RAGRL+EA++ +  M +KP   ++G +
Sbjct: 554 LVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAM 613

Query: 631 LGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQ 690
           LGAC++H+N+       E+L EL P+    + LL+N++  A  W++V +VRVSM   G +
Sbjct: 614 LGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLR 673

Query: 691 KQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           K PGCS +E+KN++H+F SG      + +I   L+ L  QI+
Sbjct: 674 KTPGCSMVEIKNEVHSFFSGSTAHPSSKKIYAFLEKLICQIK 715



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 132/498 (26%), Positives = 224/498 (44%), Gaps = 69/498 (13%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           Q K ++   + G V+EA ++F  + +K  V Y +M+  +AK   ++ A K F +M    +
Sbjct: 72  QTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEV 131

Query: 78  --VSWNSMIAGYLHNDKV-----KEARELFDKM-FRPDLFSWALMITCYTRKGELEKARE 129
             V +N      +  D+      KE   L  K  F  DLF+   +   Y +  ++ +AR+
Sbjct: 132 EPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARK 191

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN-------IVS--------- 173
           +FD +P + D   WN +VAGY++ G    A ++++ M  +N       IVS         
Sbjct: 192 VFDRMPER-DLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALR 250

Query: 174 -----------------------WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLD 210
                                    +++  Y K G +  A   F+ M ER+VVSWN M+D
Sbjct: 251 LIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMID 310

Query: 211 GYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFDQMPI----- 261
            YV+ ++   A   FQK+ ++ V    VS +  L   A  G  LE  R   ++ +     
Sbjct: 311 AYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGD-LERGRFIHKLSVELELD 369

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           RNV   N++I+ Y +  +++ AA +F ++  R  VSW  MI G+ +  +  EA     QM
Sbjct: 370 RNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQM 429

Query: 322 PYKNIAAQT----AMISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRM 373
             + +   T    ++I+   +      A  I   +  +    +V     ++  YA+CG +
Sbjct: 430 QARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAI 489

Query: 374 DEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK---RRNTVSWNALISGF 430
             A  +F  M  + + TWN MI GY        A+++FEEM K   R N V++ ++IS  
Sbjct: 490 MIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISAC 549

Query: 431 LQNEFHLDALKIFVLMTQ 448
             +      LK F +M +
Sbjct: 550 SHSGLVEAGLKCFHMMKE 567



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 161/312 (51%), Gaps = 44/312 (14%)

Query: 307 RIAKLDEARRLLDQM----PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNV 362
           R + L E R +L  +     Y+    QT ++S + +   +DEA ++F+ I     V +  
Sbjct: 46  RCSSLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYT 105

Query: 363 MIKGYAQCGRMDEAINLFRQMVNKDI------VTWNTMIAG------------------- 397
           M+KG+A+   +D+A+  F +M + ++       T+   + G                   
Sbjct: 106 MLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSG 165

Query: 398 --------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
                         YA+ RQ+ +A K+F+ M   R+ VSWN +++G+ QN     AL++ 
Sbjct: 166 FSLDLFAMTGLENMYAKCRQVHEARKVFDRM-PERDLVSWNTIVAGYSQNGMARMALEMV 224

Query: 444 VLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
            LM +E  K    T+   L A + L  +++G++IH  A+++G+ + + +  +L+ MYAKC
Sbjct: 225 NLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKC 284

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
           G ++ A LLF      +V+SWNS+I  Y  N N  EA+ +F++M+ EGV P  V+ +G L
Sbjct: 285 GSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGAL 344

Query: 564 SACSHVGLVDGG 575
            AC+ +G ++ G
Sbjct: 345 HACADLGDLERG 356



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 132/588 (22%), Positives = 255/588 (43%), Gaps = 121/588 (20%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPD 107
           ++S + + G V++A ++FE + ++  V + +M+ G+     + +A + F +M      P 
Sbjct: 75  LVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPV 134

Query: 108 LFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP 167
           ++++  ++     + EL   +E+  LL           + +G+                 
Sbjct: 135 VYNFTYLLKVCGDEAELRVGKEIHGLL-----------VKSGF----------------- 166

Query: 168 SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK 227
           S ++ +   + + Y K  ++H A K F+ M ERD+VSWN ++ GY +      A +    
Sbjct: 167 SLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNL 226

Query: 228 IPEQNV-VSWVTMLS--------------------------------------GYARNGR 248
           + E+N+  S++T++S                                       YA+ G 
Sbjct: 227 MCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGS 286

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWTTM--IDG 304
           +  AR LFD M  RNVV+WN+MI AYVQ    +EA  +F +M +    P   + M  +  
Sbjct: 287 LKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHA 346

Query: 305 YVRIAKLDEAR---RLLDQMPY-KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW 360
              +  L+  R   +L  ++   +N++   ++IS Y + K +D A  +F K+ +  +V W
Sbjct: 347 CADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSW 406

Query: 361 NVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDA--------- 407
           N MI G+AQ GR  EA+N F QM    V  D  T+ ++I   A++     A         
Sbjct: 407 NAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMR 466

Query: 408 -------------------------VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI 442
                                     ++  +M   R+  +WNA+I G+  +     AL++
Sbjct: 467 NCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALEL 526

Query: 443 FVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN--SLITMY 500
           F  M +   + +  T    +SAC+H   ++ G +  H+ +K  Y  +  + +  +++ + 
Sbjct: 527 FEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHM-MKENYSIEPSMDHYGAMVDLL 585

Query: 501 AKCGRIQNA-ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
            + GR+  A + + +      V  + +++    I+ N   A K+ E +
Sbjct: 586 GRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAERL 633



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 163/373 (43%), Gaps = 45/373 (12%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----R 105
            +++  YAK G +  AR LF+ M +RN+VSWNSMI  Y+ N+  KEA  +F KM     +
Sbjct: 275 TALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVK 334

Query: 106 PDLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNEAKKL 162
           P   S    +      G+LE+ R +  L   L    + +  N++++ Y K    + A  +
Sbjct: 335 PTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASM 394

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDL 218
              + S+ IVSWN+M+ G+ +NG    A  +F  M+ R    D  ++  ++    EL   
Sbjct: 395 FGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSIT 454

Query: 219 DSA-W---KFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
             A W      +   ++NV     ++  YA+ G ++ AR +FD M  R+V  WNAMI  Y
Sbjct: 455 HHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGY 514

Query: 275 VQRGQIEEAARLFIEMPE----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT 330
              G  + A  LF EM +     N V++ ++I        ++   +    M         
Sbjct: 515 GTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMK-------- 566

Query: 331 AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
                Y     MD    + D +G               + GR++EA +   QM  K  V 
Sbjct: 567 ---ENYSIEPSMDHYGAMVDLLG---------------RAGRLNEAWDFIMQMPVKPAVN 608

Query: 391 WNTMIAGYAQIRQ 403
               + G  QI +
Sbjct: 609 VYGAMLGACQIHK 621



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 158/314 (50%), Gaps = 13/314 (4%)

Query: 379 LFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
           +F+  + ++ +    +++ + +   +D+A ++FE + K+ N V +  ++ GF +      
Sbjct: 60  IFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLN-VLYYTMLKGFAKVSDLDK 118

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
           ALK FV M  +  +         L  C   A L++G++IH L +KSG+  DLF    L  
Sbjct: 119 ALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLEN 178

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           MYAKC ++  A  +F      D++SWN+++AGY+ NG A  A+++   M  E + P  +T
Sbjct: 179 MYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFIT 238

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
            + VL A S + L+  G ++          + LV     ++D+ ++ G L  A  +  GM
Sbjct: 239 IVSVLPAVSALRLIRIGKEIHGYAMRA-GFDSLVNIATALVDMYAKCGSLKTARLLFDGM 297

Query: 619 KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHA-------EA 671
            ++ N   W +++ A   ++N K   +  +K+ + E  K +  +++  +HA       E 
Sbjct: 298 -LERNVVSWNSMIDAYVQNENPKEAMVIFQKMLD-EGVKPTDVSVMGALHACADLGDLER 355

Query: 672 GRWDEVEKVRVSME 685
           GR+  + K+ V +E
Sbjct: 356 GRF--IHKLSVELE 367



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 124/269 (46%), Gaps = 17/269 (6%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
           +N    NS+IS Y K   V+ A  +F ++  R +VSWN+MI G+  N +  EA   F +M
Sbjct: 370 RNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQM 429

Query: 104 ----FRPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNY 156
                +PD F++  +IT          A+ +  ++      ++     A+V  YAK G  
Sbjct: 430 QARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAI 489

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGY 212
             A+ + D M  +++ +WN+M+ GY  +G    A + FE M++  +    V++  ++   
Sbjct: 490 MIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISAC 549

Query: 213 VELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPIRNVV-A 266
                +++  K F  + E   +      +  M+    R GR+ EA     QMP++  V  
Sbjct: 550 SHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNV 609

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPERNP 295
           + AM+ A      +  A ++   + E NP
Sbjct: 610 YGAMLGACQIHKNVNFAEKVAERLFELNP 638



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 102/231 (44%), Gaps = 52/231 (22%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQK----NTVTYNSMISA------------------- 55
           N  I    ++GR  EA+  FSQM  +    +T TY S+I+A                   
Sbjct: 407 NAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMR 466

Query: 56  ----------------YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEAREL 99
                           YAK G +  AR +F+ M +R++ +WN+MI GY  +   K A EL
Sbjct: 467 NCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALEL 526

Query: 100 FDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTAC------WNAMVAG 149
           F++M     RP+  ++  +I+  +  G +E   + F ++  KE+ +       + AMV  
Sbjct: 527 FEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMM--KENYSIEPSMDHYGAMVDL 584

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVS-WNSMLSGYTKNGEMHLASKFFEAMEE 199
             + G  NEA   +  MP K  V+ + +ML     +  ++ A K  E + E
Sbjct: 585 LGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAERLFE 635



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 9/161 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF     +    K G +  A  IF  MS+++  T+N+MI  Y  +G    A +LFE+M +
Sbjct: 473 VFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQK 532

Query: 75  ----RNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELE 125
                N V++ S+I+   H+  V+   + F  M       P +  +  M+    R G L 
Sbjct: 533 GTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLN 592

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           +A +    +P K     + AM+       N N A+K+ + +
Sbjct: 593 EAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAERL 633


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 217/697 (31%), Positives = 351/697 (50%), Gaps = 78/697 (11%)

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACW---NAMVAGYAKIGNYNEAKKLL 163
           D  ++  ++ C TR G L   +     +       C    N ++  Y K G  + AKKL 
Sbjct: 18  DSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKLF 77

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWK 223
           D MP +N+VSWNS++SGYT+ G  H     F+     D     L LD +   + L    +
Sbjct: 78  DRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSD-----LRLDKFTFSNALSVCGR 132

Query: 224 FFQKIPEQNVVSWVT-------------MLSGYARNGRMLEARRLFDQMPIRNVVAWNAM 270
                  + + + +T             ++  Y + GR+  AR +F+     + V+WN++
Sbjct: 133 TLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSL 192

Query: 271 IAAYVQRGQIEEAARLFIEMPER------------------------------------- 293
           IA YV+ G  +E  RL ++M                                        
Sbjct: 193 IAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKL 252

Query: 294 ----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRM-----DE 344
               + V  T ++D Y +I  L++A ++   MP  N+    AMI+G++Q + M     +E
Sbjct: 253 GLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANE 312

Query: 345 ANQIFDKIGTHDV----VCWNVMIKGYA-----QCGRMDEAINLFRQMVNKDIVTWNTMI 395
           A  +F ++ +  +      ++ ++K  +     +CG+   A  +F+  +  D    N ++
Sbjct: 313 AMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHA-QIFKYNLQSDEFIGNALV 371

Query: 396 AGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADH 455
             Y+    ++D +K F    K  + VSW +LI G +QN      L +F  +   G+K D 
Sbjct: 372 ELYSLSGSIEDGLKCFHSTPKL-DVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDE 430

Query: 456 STLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD 515
            T++  LSACA+LAA++ G QIH  AIK+G  N   + NS I MYAKCG I +A + FK+
Sbjct: 431 FTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKE 490

Query: 516 ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
               D++SW+ +I+  A +G A EA+ LFE M   G+AP+ +TF+GVL ACSH GLV+ G
Sbjct: 491 TKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEG 550

Query: 576 LKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACR 635
           L+ FE M + + I P V+H AC++DLL RAGRL EA   +     + +  +W +LL ACR
Sbjct: 551 LRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACR 610

Query: 636 MHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGC 695
           +H+    G+   E++ ELEP+  + Y LL N++ +AG      ++R  M+  G +K+PG 
Sbjct: 611 VHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGL 670

Query: 696 SWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           SWIEV N +H+F++GD     +  I   L+ +  +I+
Sbjct: 671 SWIEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIK 707



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 151/612 (24%), Positives = 248/612 (40%), Gaps = 153/612 (25%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL- 108
           N+++  Y K G  + A+KLF++MP+RN+VSWNS+I+GY       E   LF +    DL 
Sbjct: 58  NNLLYMYCKCGETDVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLR 117

Query: 109 -----FSWAL---------------------------------MITCYTRKGELEKAREL 130
                FS AL                                 +I  Y + G ++ AR +
Sbjct: 118 LDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLV 177

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           F+   ++ D+  WN+++AGY +IG+ +E  +LL  M  ++ ++ NS   G          
Sbjct: 178 FE-SADELDSVSWNSLIAGYVRIGSNDEMLRLLVKM-LRHGLNLNSYALGSALKA---CG 232

Query: 191 SKFFEAME--------------ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSW 236
           S F  ++E              + DVV    +LD Y ++ DL+ A K F+ +P+ NVV +
Sbjct: 233 SNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMY 292

Query: 237 VTMLSGYARNGRML-----EARRLFDQMPIRNV--------------------------- 264
             M++G+ +   M      EA  LF +M  R +                           
Sbjct: 293 NAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIH 352

Query: 265 ------------VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLD 312
                          NA++  Y   G IE+  + F   P+ + VSWT++I G+V+  + +
Sbjct: 353 AQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFE 412

Query: 313 EARRLLDQMPYKNIAAQTAMIS---------GYVQNKRMDEANQIFDKIGTHDVVCWNVM 363
               L  ++ +         IS           V++     A  I   IG   ++  N  
Sbjct: 413 GGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTII-QNSQ 471

Query: 364 IKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
           I  YA+CG +D A   F++  N DIV+W+ MI+  AQ     +AV +FE           
Sbjct: 472 ICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFE----------- 520

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
                                LM   G   +H T    L AC+H   ++ G +   +  K
Sbjct: 521 ---------------------LMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKK 559

Query: 484 S-GYVNDLFVGNSLITMYAKCGRIQNAELLFKDA----DPVDVISWNSLIAGYAINGNAT 538
             G   ++     ++ +  + GR+  AE    D+    DPV    W SL++   ++  AT
Sbjct: 560 DHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPV---MWRSLLSACRVH-KAT 615

Query: 539 EAIKLFEEMVME 550
           +  K   E V+E
Sbjct: 616 DTGKRVAERVIE 627



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 127/490 (25%), Positives = 214/490 (43%), Gaps = 48/490 (9%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL 88
           GR+  A+   S +     +T NS+I  Y K GR++ AR +FE   + + VSWNS+IAGY+
Sbjct: 139 GRLIHALITVSGLGGPVLLT-NSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYV 197

Query: 89  HNDKVKEARELFDKMFRP--DLFSWALMITCYTRKGELEKARELFDLLPN-------KED 139
                 E   L  KM R   +L S+AL             + E   +L           D
Sbjct: 198 RIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLD 257

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK---------NGEMHLA 190
                A++  YAKIG+  +A K+   MP  N+V +N+M++G+ +         N  M+L 
Sbjct: 258 VVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYL- 316

Query: 191 SKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS----WVTMLSG 242
             FFE M+ R +     +++ +L     ++  +   +   +I + N+ S       ++  
Sbjct: 317 --FFE-MQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVEL 373

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM--PERNPVSWT- 299
           Y+ +G + +  + F   P  +VV+W ++I  +VQ GQ E    LF E+    R P  +T 
Sbjct: 374 YSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTI 433

Query: 300 -TMIDGYVRIAKLDEARRLLDQMPYKNIA----AQTAMISGYVQNKRMDEANQIFDKIGT 354
             M+     +A +    ++        I      Q + I  Y +   +D AN  F +   
Sbjct: 434 SIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKN 493

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI----VTWNTMIAGYAQIRQMDDAVKI 410
            D+V W+VMI   AQ G   EA++LF  M    I    +T+  ++   +    +++ ++ 
Sbjct: 494 PDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRY 553

Query: 411 FEEMGKRRN---TVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
           FE M K       V  +A I   L     L   + F++    G + D       LSAC  
Sbjct: 554 FEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIM--DSGFEGDPVMWRSLLSACRV 611

Query: 468 LAALQLGRQI 477
             A   G+++
Sbjct: 612 HKATDTGKRV 621



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 3/202 (1%)

Query: 450 GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA 509
           G   D  T    +       +L  G+  H   IK+ +   LF+ N+L+ MY KCG    A
Sbjct: 14  GLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVA 73

Query: 510 ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
           + LF      +V+SWNSLI+GY   G   E + LF+E  M  +  D  TF   LS C   
Sbjct: 74  KKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRT 133

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629
             +  G +L   +  V  +   V     +ID+  + GR+D A  +V     + ++  W +
Sbjct: 134 LDLRLG-RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWA-RLVFESADELDSVSWNS 191

Query: 630 LL-GACRMHQNIKLGRIAVEKL 650
           L+ G  R+  N ++ R+ V+ L
Sbjct: 192 LIAGYVRIGSNDEMLRLLVKML 213



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 9/146 (6%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G++   QN +I    K G ++ A   F +    + V+++ MIS+ A++G   +A  LFE 
Sbjct: 462 GNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFEL 521

Query: 72  MPQR----NLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKG 122
           M       N +++  ++    H   V+E    F+ M       P++   A ++    R G
Sbjct: 522 MKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAG 581

Query: 123 ELEKARELFDLLPNKEDTACWNAMVA 148
            L +A         + D   W ++++
Sbjct: 582 RLAEAESFIMDSGFEGDPVMWRSLLS 607


>gi|449451309|ref|XP_004143404.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
 gi|449526377|ref|XP_004170190.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 577

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 190/538 (35%), Positives = 301/538 (55%), Gaps = 26/538 (4%)

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARN 246
           M L S   +     D+   N ++D Y + + +++A K F  +P +N+ SW T+L+ Y+R 
Sbjct: 31  MSLHSHLIKTALSFDLFLANRLIDMYSKCNSMENAQKAFDDLPIRNIHSWNTILASYSRA 90

Query: 247 GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYV 306
           G   +AR++FD+MP  N+V++N +I+++   G   E+  +F +M +              
Sbjct: 91  GFFSQARKVFDEMPHPNIVSYNTLISSFTHHGLYVESMNIFRQMQQ-------------- 136

Query: 307 RIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG 366
                D     LD++   +IA   A + G ++  R      I   +  + +VC N ++  
Sbjct: 137 -----DFDLLALDEITLVSIAGTCACL-GALEFLRQVHGAAIVIGLEFNMIVC-NAIVDA 189

Query: 367 YAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNAL 426
           Y +CG  D + ++F +M  +D+VTW +M+  Y Q  ++DDA ++F  M   +N  +W AL
Sbjct: 190 YGKCGDPDASYSIFSRMKERDVVTWTSMVVAYNQTSRLDDAFRVFSCM-PVKNVHTWTAL 248

Query: 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI-KSG 485
           I+  ++N++  +AL +F  M +E    +  T    LSACA LA +  G++IH L I +S 
Sbjct: 249 INALVKNKYSNEALDLFQQMLEEKTSPNAFTFVGVLSACADLALIAKGKEIHGLIIRRSS 308

Query: 486 YVN--DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
            +N  +++V N+LI +Y+K G +++A +LF      DV+SWNSLI G+A NG   EA+  
Sbjct: 309 ELNFPNVYVCNALIDLYSKSGDVKSARMLFNLILEKDVVSWNSLITGFAQNGLGREALLA 368

Query: 544 FEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLS 603
           F +M   G+ P+ VTF+ VLSACSH GL   GL + E M + Y IEP +EHYA MID+  
Sbjct: 369 FRKMTEVGIRPNKVTFLAVLSACSHTGLSSEGLCILELMEKFYDIEPSLEHYAVMIDMFG 428

Query: 604 RAGRLDEAFEMV-KGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYA 662
           R  RL EA +++ +      + GIWG +LGACR+H+N+ L   A E L E+EP     Y 
Sbjct: 429 RENRLAEALDLISRAPNGSKHVGIWGAVLGACRIHENLDLAIRAAETLFEMEPDNAGRYV 488

Query: 663 LLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           +LSN+ A A RW +   VR  ME  G +K+   S IE++N  H F++ D    +  EI
Sbjct: 489 MLSNVFAAASRWMDAHNVRKLMEERGFKKEVAYSCIEIRNIRHKFVARDNSHSQMGEI 546



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 180/385 (46%), Gaps = 64/385 (16%)

Query: 88  LHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMV 147
           LH+  +K A          DLF    +I  Y++   +E A++ FD LP + +   WN ++
Sbjct: 33  LHSHLIKTALSF-------DLFLANRLIDMYSKCNSMENAQKAFDDLPIR-NIHSWNTIL 84

Query: 148 AGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME--------- 198
           A Y++ G +++A+K+ D MP  NIVS+N+++S +T +G    +   F  M+         
Sbjct: 85  ASYSRAGFFSQARKVFDEMPHPNIVSYNTLISSFTHHGLYVESMNIFRQMQQDFDLLALD 144

Query: 199 --------------------------------ERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
                                           E +++  N ++D Y +  D D+++  F 
Sbjct: 145 EITLVSIAGTCACLGALEFLRQVHGAAIVIGLEFNMIVCNAIVDAYGKCGDPDASYSIFS 204

Query: 227 KIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
           ++ E++VV+W +M+  Y +  R+ +A R+F  MP++NV  W A+I A V+     EA  L
Sbjct: 205 RMKERDVVTWTSMVVAYNQTSRLDDAFRVFSCMPVKNVHTWTALINALVKNKYSNEALDL 264

Query: 287 FIEMPER----NPVSWTTMIDGYVRIAKLDEAR-------RLLDQMPYKNIAAQTAMISG 335
           F +M E     N  ++  ++     +A + + +       R   ++ + N+    A+I  
Sbjct: 265 FQQMLEEKTSPNAFTFVGVLSACADLALIAKGKEIHGLIIRRSSELNFPNVYVCNALIDL 324

Query: 336 YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI----VTW 391
           Y ++  +  A  +F+ I   DVV WN +I G+AQ G   EA+  FR+M    I    VT+
Sbjct: 325 YSKSGDVKSARMLFNLILEKDVVSWNSLITGFAQNGLGREALLAFRKMTEVGIRPNKVTF 384

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGK 416
             +++  +      + + I E M K
Sbjct: 385 LAVLSACSHTGLSSEGLCILELMEK 409



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 110/474 (23%), Positives = 221/474 (46%), Gaps = 35/474 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F  N+ I    K   +E A K F  +  +N  ++N+++++Y++ G  + ARK+F++MP 
Sbjct: 46  LFLANRLIDMYSKCNSMENAQKAFDDLPIRNIHSWNTILASYSRAGFFSQARKVFDEMPH 105

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRP-DLFSW------ALMITCYTRKGELEKA 127
            N+VS+N++I+ + H+    E+  +F +M +  DL +       ++  TC    G LE  
Sbjct: 106 PNIVSYNTLISSFTHHGLYVESMNIFRQMQQDFDLLALDEITLVSIAGTCACL-GALEFL 164

Query: 128 RELFD---LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
           R++     ++  + +    NA+V  Y K G+ + +  +   M  +++V+W SM+  Y + 
Sbjct: 165 RQVHGAAIVIGLEFNMIVCNAIVDAYGKCGDPDASYSIFSRMKERDVVTWTSMVVAYNQT 224

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTML 240
             +  A + F  M  ++V +W  +++  V+    + A   FQ++ E+    N  ++V +L
Sbjct: 225 SRLDDAFRVFSCMPVKNVHTWTALINALVKNKYSNEALDLFQQMLEEKTSPNAFTFVGVL 284

Query: 241 SGYARNGRMLEAR-------RLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           S  A    + + +       R   ++   NV   NA+I  Y + G ++ A  LF  + E+
Sbjct: 285 SACADLALIAKGKEIHGLIIRRSSELNFPNVYVCNALIDLYSKSGDVKSARMLFNLILEK 344

Query: 294 NPVSWTTMIDGYVRIAKLDEA----RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF 349
           + VSW ++I G+ +     EA    R++ +     N     A++S         E   I 
Sbjct: 345 DVVSWNSLITGFAQNGLGREALLAFRKMTEVGIRPNKVTFLAVLSACSHTGLSSEGLCIL 404

Query: 350 DKIGT-HDVVC----WNVMIKGYAQCGRMDEAINLFRQMVN--KDIVTWNTMIAGYAQIR 402
           + +   +D+      + VMI  + +  R+ EA++L  +  N  K +  W  ++       
Sbjct: 405 ELMEKFYDIEPSLEHYAVMIDMFGRENRLAEALDLISRAPNGSKHVGIWGAVLGACRIHE 464

Query: 403 QMDDAVKIFEEMGKRR--NTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
            +D A++  E + +    N   +  L + F      +DA  +  LM + G K +
Sbjct: 465 NLDLAIRAAETLFEMEPDNAGRYVMLSNVFAAASRWMDAHNVRKLMEERGFKKE 518



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 163/343 (47%), Gaps = 31/343 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +   GK G  + +  IFS+M +++ VT+ SM+ AY +  R++DA ++F  MP +N+ 
Sbjct: 184 NAIVDAYGKCGDPDASYSIFSRMKERDVVTWTSMVVAYNQTSRLDDAFRVFSCMPVKNVH 243

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLL 134
           +W ++I   + N    EA +LF +M      P+ F++  +++       + K +E+  L+
Sbjct: 244 TWTALINALVKNKYSNEALDLFQQMLEEKTSPNAFTFVGVLSACADLALIAKGKEIHGLI 303

Query: 135 P------NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
                  N  +    NA++  Y+K G+   A+ L + +  K++VSWNS+++G+ +NG   
Sbjct: 304 IRRSSELNFPNVYVCNALIDLYSKSGDVKSARMLFNLILEKDVVSWNSLITGFAQNGLGR 363

Query: 189 LASKFFEAMEERDV----VSWNLMLDGYVE-------LDDLDSAWKFFQKIPEQNVVSWV 237
            A   F  M E  +    V++  +L            L  L+   KF+   P  ++  + 
Sbjct: 364 EALLAFRKMTEVGIRPNKVTFLAVLSACSHTGLSSEGLCILELMEKFYDIEP--SLEHYA 421

Query: 238 TMLSGYARNGRMLEARRLFDQMP--IRNVVAWNAMIAAYVQRGQIE---EAARLFIEMPE 292
            M+  + R  R+ EA  L  + P   ++V  W A++ A      ++    AA    EM  
Sbjct: 422 VMIDMFGRENRLAEALDLISRAPNGSKHVGIWGAVLGACRIHENLDLAIRAAETLFEMEP 481

Query: 293 RNPVSWTTMIDGYVRIAKLDEA---RRLLDQMPYKNIAAQTAM 332
            N   +  + + +   ++  +A   R+L+++  +K   A + +
Sbjct: 482 DNAGRYVMLSNVFAAASRWMDAHNVRKLMEERGFKKEVAYSCI 524



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 81/149 (54%), Gaps = 11/149 (7%)

Query: 460 CA--LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD 517
           CA   S C     L++G  +H   IK+    DLF+ N LI MY+KC  ++NA+  F D  
Sbjct: 14  CARLFSKCIQHKHLRVGMSLHSHLIKTALSFDLFLANRLIDMYSKCNSMENAQKAFDDLP 73

Query: 518 PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLK 577
             ++ SWN+++A Y+  G  ++A K+F+EM      P+ V++  ++S+ +H GL    + 
Sbjct: 74  IRNIHSWNTILASYSRAGFFSQARKVFDEM----PHPNIVSYNTLISSFTHHGLYVESMN 129

Query: 578 LFECMTEVYAIEPLVEHYACMIDLLSRAG 606
           +F  M + + +  L E     I L+S AG
Sbjct: 130 IFRQMQQDFDLLALDE-----ITLVSIAG 153


>gi|38347497|emb|CAE05845.2| OSJNBa0091C07.7 [Oryza sativa Japonica Group]
          Length = 749

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 201/659 (30%), Positives = 346/659 (52%), Gaps = 28/659 (4%)

Query: 96  ARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAK 152
           AR +FD M R    SW   +  + R+G +  A      +       D A + + +   A+
Sbjct: 65  ARGVFDGMRRRAALSWNATVAAHARRGRVRDALGTAARMHRSAAGLDEATYASALGACAR 124

Query: 153 -----IG---NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS 204
                +G   +    K   D  P    V   S+L  Y+   ++  A   F+ +   + + 
Sbjct: 125 GRCLRMGWQVHCQVVKSGSDDFP----VVGASLLDFYSSCLDLDAARTLFDTLHANNELL 180

Query: 205 WNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSWVTMLSGYAR--NGRMLEARRLFDQM-- 259
           W+ M+   V  + L  A    Q++P  +++ +W  ++SGYAR  N    ++  LF Q+  
Sbjct: 181 WSPMVVALVRFNLLSDALDLLQRMPPSRDLFAWTAIISGYARGANEYCCKSLELFVQLLA 240

Query: 260 ---PIRNVVAWNAMIAAYVQRGQIEEAAR----LFIEMPERNPVSWTTMIDGYVRIAKLD 312
               + N   +++++ A V+ G +E        L     E   +  + ++D Y R   +D
Sbjct: 241 EDGVMPNEFTYDSVLRACVKMGALEFGRSIHGCLIQSGFESEQLITSALVDLYCRSGAVD 300

Query: 313 EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGR 372
           +A  + + +   ++     +I+G++   R ++A  +F ++  HD   +N+MIK YA  GR
Sbjct: 301 DAVMVYNGLQMPSLITSNTLIAGFISMGRTEDAKLVFSQMTEHDSGSYNLMIKAYADEGR 360

Query: 373 MDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
           +++   +F  M  +++VT N+M++   Q  ++++  K+FE++   RNTV+WN++ISG++Q
Sbjct: 361 LEDCRRMFEMMPRRNMVTLNSMMSVLLQNGKLEEGRKLFEQIKDERNTVTWNSMISGYVQ 420

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
           N+   +ALK+F +M +   +   ST    L ACA +  ++ G+ +H L  K+ + ++ +V
Sbjct: 421 NDQSSEALKLFAVMCRLSIECSASTFPALLHACATIGTIEQGKMVHALLCKTPFESNGYV 480

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
           G +L+ MY+KCG + +A   F      +V SW SLI G A NG+  EAI  F  M+   V
Sbjct: 481 GTALVDMYSKCGCVSDARAAFSCIMSPNVASWTSLINGLAQNGHWMEAIVQFARMLKNNV 540

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
            P+ +TF+G+L A +  GLV+ G++ F  M E Y + P VEHY C +DLL RA R+ EA 
Sbjct: 541 KPNEITFLGILMASARAGLVNKGMRFFHSM-ESYGVVPTVEHYTCAVDLLGRARRVREAE 599

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672
           + +  M I  +  +WG LL AC    ++++G    EKL  +  +  S Y  +SN++A+ G
Sbjct: 600 KFISKMPIPADGVVWGALLTACWYTMDLEMGEKVAEKLFYMGTKHISAYVAMSNIYAKLG 659

Query: 673 RWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           +W++V KVR  +    A+K+PGCSWIEVK+ +H FL  D       EI   L+ L + I
Sbjct: 660 KWEDVVKVRTRLRSINAKKEPGCSWIEVKDMVHVFLVEDRNHPEREEIYLMLEDLVSNI 718



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 206/408 (50%), Gaps = 24/408 (5%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM-PQRNLVSWNSMIAGYLH 89
           ++ A  +F  +   N + ++ M+ A  +   ++DA  L ++M P R+L +W ++I+GY  
Sbjct: 163 LDAARTLFDTLHANNELLWSPMVVALVRFNLLSDALDLLQRMPPSRDLFAWTAIISGYAR 222

Query: 90  --NDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARELFDLLPN---KED 139
             N+   ++ ELF ++       P+ F++  ++    + G LE  R +   L     + +
Sbjct: 223 GANEYCCKSLELFVQLLAEDGVMPNEFTYDSVLRACVKMGALEFGRSIHGCLIQSGFESE 282

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE 199
               +A+V  Y + G  ++A  + + +   ++++ N++++G+   G    A   F  M E
Sbjct: 283 QLITSALVDLYCRSGAVDDAVMVYNGLQMPSLITSNTLIAGFISMGRTEDAKLVFSQMTE 342

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM 259
            D  S+NLM+  Y +   L+   + F+ +P +N+V+  +M+S   +NG++ E R+LF+Q+
Sbjct: 343 HDSGSYNLMIKAYADEGRLEDCRRMFEMMPRRNMVTLNSMMSVLLQNGKLEEGRKLFEQI 402

Query: 260 PI-RNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEA 314
              RN V WN+MI+ YVQ  Q  EA +LF  M     E +  ++  ++     I  +++ 
Sbjct: 403 KDERNTVTWNSMISGYVQNDQSSEALKLFAVMCRLSIECSASTFPALLHACATIGTIEQG 462

Query: 315 R---RLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC 370
           +    LL + P++ N    TA++  Y +   + +A   F  I + +V  W  +I G AQ 
Sbjct: 463 KMVHALLCKTPFESNGYVGTALVDMYSKCGCVSDARAAFSCIMSPNVASWTSLINGLAQN 522

Query: 371 GRMDEAINLFRQMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEM 414
           G   EAI  F +M+  ++    +T+  ++   A+   ++  ++ F  M
Sbjct: 523 GHWMEAIVQFARMLKNNVKPNEITFLGILMASARAGLVNKGMRFFHSM 570



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 181/375 (48%), Gaps = 24/375 (6%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           +SG V++A+ +++ +   + +T N++I+ +   GR  DA+ +F QM + +  S+N MI  
Sbjct: 295 RSGAVDDAVMVYNGLQMPSLITSNTLIAGFISMGRTEDAKLVFSQMTEHDSGSYNLMIKA 354

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
           Y    ++++ R +F+ M R ++ +   M++   + G+LE+ R+LF+ + ++ +T  WN+M
Sbjct: 355 YADEGRLEDCRRMFEMMPRRNMVTLNSMMSVLLQNGKLEEGRKLFEQIKDERNTVTWNSM 414

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLS---------GYTKNGEMHLASKFFEAM 197
           ++GY +    +EA KL   M   +I    S            G  + G+M  A       
Sbjct: 415 ISGYVQNDQSSEALKLFAVMCRLSIECSASTFPALLHACATIGTIEQGKMVHALLCKTPF 474

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFD 257
           E    V    ++D Y +   +  A   F  I   NV SW ++++G A+NG  +EA   F 
Sbjct: 475 ESNGYVG-TALVDMYSKCGCVSDARAAFSCIMSPNVASWTSLINGLAQNGHWMEAIVQFA 533

Query: 258 QMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS----WTTMIDGYVRIA 309
           +M   NV    + +  ++ A  + G + +  R F  M     V     +T  +D   R  
Sbjct: 534 RMLKNNVKPNEITFLGILMASARAGLVNKGMRFFHSMESYGVVPTVEHYTCAVDLLGRAR 593

Query: 310 KLDEARRLLDQMPYK-NIAAQTAMISG--YVQNKRMDE--ANQIFDKIGTHDVVCWNVMI 364
           ++ EA + + +MP   +     A+++   Y  +  M E  A ++F  +GT  +  +  M 
Sbjct: 594 RVREAEKFISKMPIPADGVVWGALLTACWYTMDLEMGEKVAEKLF-YMGTKHISAYVAMS 652

Query: 365 KGYAQCGRMDEAINL 379
             YA+ G+ ++ + +
Sbjct: 653 NIYAKLGKWEDVVKV 667


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 207/576 (35%), Positives = 309/576 (53%), Gaps = 62/576 (10%)

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
           Y +   L  A K FQ I + NV S+  +++ YA+  R L A +LFDQ+P  ++V++N +I
Sbjct: 53  YSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLI 112

Query: 272 AAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGY----VRIAKLDEARRLLDQMPY---- 323
           +AY   G+   A  LF  M E         +DG+    V  A  D+   L+ Q+      
Sbjct: 113 SAYADCGETAPALGLFSGMREMG-----LDMDGFTLSAVITACCDDVG-LIGQLHSVAVS 166

Query: 324 ----KNIAAQTAMISGYVQNKRMDEANQIFDKIG-THDVVCWNVMIKGYAQCGRMDEAIN 378
                 ++   A+++ Y +N  +D+A ++F  +G   D V WN MI  Y Q     +A+ 
Sbjct: 167 SGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALG 226

Query: 379 LFRQMV----NKDIVTWNTMIAGYAQIRQ------------------------------- 403
           LF++MV    N D+ T  +++  +  +                                 
Sbjct: 227 LFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYS 286

Query: 404 -----MDDAVKIFEEMGKRRNTVSWNALISGFLQNE-FHLDALKIFVLMTQEGKKADHST 457
                M D  K+FEE+    + V WN ++SG+ QNE F  DAL+ F  M   G + +  +
Sbjct: 287 KCGGGMSDCRKVFEEI-TEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCS 345

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGY-VNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
             C +SAC++L++   G+QIH LA+KS    N + V N+LI MY+KCG +Q+A  LF   
Sbjct: 346 FVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRM 405

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGL 576
              + +S NS+IAGYA +G   E++ LF+ M+   +AP  +TFI VLSAC+H G V+ G 
Sbjct: 406 AEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGW 465

Query: 577 KLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRM 636
             F  M E + IEP  EHY+CMIDLL RAG+L EA  ++  M   P +  W +LLGACR 
Sbjct: 466 NYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRT 525

Query: 637 HQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCS 696
           H NI+L   A  ++ +LEP   + Y +LSNM+A AGRW+EV  VR  M   G +K+PGCS
Sbjct: 526 HGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCS 585

Query: 697 WIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           WIEVK +IH F++ D       EI   L+ ++ +++
Sbjct: 586 WIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMK 621



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/434 (26%), Positives = 215/434 (49%), Gaps = 29/434 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            +  N  I    K GR+  A K F  +S  N  ++N++I+AYAK  R   A +LF+Q+P+
Sbjct: 43  TYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPE 102

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMIT-CYTRKGELEKARE 129
            +LVS+N++I+ Y    +   A  LF  M       D F+ + +IT C    G + +   
Sbjct: 103 PDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITACCDDVGLIGQLHS 162

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS-KNIVSWNSMLSGYTKNGEMH 188
           +          +  NA++  Y K G+ ++AK++   M   ++ VSWNSM+  Y ++ E  
Sbjct: 163 VAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGS 222

Query: 189 LASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPE----QNVVSWVTML 240
            A   F+ M  R    D+ +   +L  +  L+DL    +F  ++ +    QN      ++
Sbjct: 223 KALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLI 282

Query: 241 SGYAR-NGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ-IEEAARLFIEMP----ERN 294
             Y++  G M + R++F+++   ++V WN M++ Y Q  + +E+A   F +M       N
Sbjct: 283 DLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPN 342

Query: 295 PVSWTTMIDGYVRIAKLDEARR-----LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF 349
             S+  +I     ++   + ++     L   +P   I+   A+I+ Y +   + +A ++F
Sbjct: 343 DCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLF 402

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI----VTWNTMIAGYAQIRQMD 405
           D++  H+ V  N MI GYAQ G   E+++LF+ M+ + I    +T+ ++++  A   +++
Sbjct: 403 DRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVE 462

Query: 406 DAVKIFEEMGKRRN 419
           +    F  M ++ N
Sbjct: 463 EGWNYFNMMKEKFN 476



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 111/468 (23%), Positives = 197/468 (42%), Gaps = 80/468 (17%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF+ N  I    K  R   A ++F Q+ + + V+YN++ISAYA  G    A  LF  M +
Sbjct: 74  VFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMRE 133

Query: 75  RNL----VSWNSMIA---------GYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRK 121
             L     + +++I          G LH+  V      FD     +      ++T Y + 
Sbjct: 134 MGLDMDGFTLSAVITACCDDVGLIGQLHSVAVSSG---FDSYVSVN----NALLTYYGKN 186

Query: 122 GELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSM 177
           G+L+ A+ +F  +    D   WN+M+  Y +    ++A  L   M  +    ++ +  S+
Sbjct: 187 GDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASV 246

Query: 178 LSGYT------------------------------------KNGEMHLASKFFEAMEERD 201
           L+ +T                                      G M    K FE + E D
Sbjct: 247 LTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPD 306

Query: 202 VVSWNLMLDGYVELDD-LDSAWKFFQKIP----EQNVVSWVTMLSGYAR-----NGRMLE 251
           +V WN M+ GY + ++ L+ A + F+++       N  S+V ++S  +       G+ + 
Sbjct: 307 LVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIH 366

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKL 311
           +  L   +P   +   NA+IA Y + G +++A RLF  M E N VS  +MI GY +    
Sbjct: 367 SLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIE 426

Query: 312 DEARRLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFDKIGTH-----DVVCWNV 362
            E+  L   M  + IA  +    +++S      R++E    F+ +        +   ++ 
Sbjct: 427 MESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSC 486

Query: 363 MIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAGYAQIRQMDDAVK 409
           MI    + G++ EA NL  +M  N   + W +++        ++ AVK
Sbjct: 487 MIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVK 534



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 144/276 (52%), Gaps = 13/276 (4%)

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
           N  I  Y++CGR+  A   F+ + + ++ ++N +IA YA+  +   A ++F+++    + 
Sbjct: 47  NHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQI-PEPDL 105

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
           VS+N LIS +        AL +F  M + G   D  TL+  ++AC     L +G Q+H +
Sbjct: 106 VSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVITACCDDVGL-IG-QLHSV 163

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV-DVISWNSLIAGYAINGNATE 539
           A+ SG+ + + V N+L+T Y K G + +A+ +F     + D +SWNS+I  Y  +   ++
Sbjct: 164 AVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSK 223

Query: 540 AIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMI 599
           A+ LF+EMV  G+  D  T   VL+A + +  + GGL+    + +           + +I
Sbjct: 224 ALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKT-GFHQNSHVGSGLI 282

Query: 600 DLLSRAG----RLDEAFEMVKGMKIKPNAGIWGTLL 631
           DL S+ G       + FE +     +P+  +W T++
Sbjct: 283 DLYSKCGGGMSDCRKVFEEIT----EPDLVLWNTMV 314



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/395 (22%), Positives = 164/395 (41%), Gaps = 94/395 (23%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQ-KNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           SYV   N  +T  GK+G +++A ++F  M   ++ V++NSMI AY ++   + A  LF++
Sbjct: 171 SYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQE 230

Query: 72  MPQRNL----VSWNSMIAGY-----------LHNDKVK---------------------- 94
           M +R L     +  S++  +            H   +K                      
Sbjct: 231 MVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGG 290

Query: 95  ---EARELFDKMFRPDLFSWALMITCYTRKGE-LEKARELFDLL------PNKEDTACW- 143
              + R++F+++  PDL  W  M++ Y++  E LE A E F  +      PN     C  
Sbjct: 291 GMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVI 350

Query: 144 --------------------------------NAMVAGYAKIGNYNEAKKLLDAMPSKNI 171
                                           NA++A Y+K GN  +A++L D M   N 
Sbjct: 351 SACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNT 410

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQK 227
           VS NSM++GY ++G    +   F+ M ER +    +++  +L        ++  W +F  
Sbjct: 411 VSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNM 470

Query: 228 IPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE 281
           + E+  +      +  M+    R G++ EA  L  +MP     + W +++ A    G IE
Sbjct: 471 MKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIE 530

Query: 282 ---EAARLFIEMPERNPVSWTTMIDGYVRIAKLDE 313
              +AA   +++   N   +  + + Y    + +E
Sbjct: 531 LAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEE 565



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 4/124 (3%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           L  C     L  G+ +H L IKS      +  N  I +Y+KCGR+  A   F+D    +V
Sbjct: 15  LKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNV 74

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC 581
            S+N++IA YA       A +LF+++      PD V++  ++SA +  G     L LF  
Sbjct: 75  FSFNAIIAAYAKESRPLIAHQLFDQI----PEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 582 MTEV 585
           M E+
Sbjct: 131 MREM 134


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 251/849 (29%), Positives = 384/849 (45%), Gaps = 147/849 (17%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ--RNLVSWNSMIAG 86
           G+   A+ + S ++    VT N++I+ YAK G +  ARKLF+  PQ  R+LV++N+++A 
Sbjct: 32  GKRTHAVIVTSGLNPDRYVT-NNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAA 90

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTAC---- 142
           Y H  ++ +  +  +      L   ++M+T       L K   L+      E        
Sbjct: 91  YAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVK 150

Query: 143 ----WNAMVAG-----YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE----MHL 189
               W+  VAG     YAK     EA+ L D MP +++V WN M+  Y + G     + L
Sbjct: 151 IGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGL 210

Query: 190 ASKFFEAMEERDVVSWNLMLDGY-------VELDDLDS-AWKFFQKIPEQNVVSWVTMLS 241
            S F  +    D VS   +L G         EL+ + + A K F    + +V  W   LS
Sbjct: 211 FSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLS 270

Query: 242 GYARNGRMLEARRLFDQM-------------PIRNVVA-------------------W-- 267
            Y + G   EA   F  M              I +VVA                   W  
Sbjct: 271 SYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQ 330

Query: 268 -----NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL---- 318
                N+ I  YV+ G +  A R+F +M E + +SW T+I G  R    + + RL     
Sbjct: 331 FVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLL 390

Query: 319 ------DQMPYKNIA------------------------------AQTAMISGYVQNKRM 342
                 DQ    ++                                 TA+I  Y +  +M
Sbjct: 391 RSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKM 450

Query: 343 DEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK---------------- 386
           +EA  +F      D+  WN M+ G+       EA+ LF  M  +                
Sbjct: 451 EEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAA 510

Query: 387 -----------------------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
                                  D+   + ++  Y +  +M  A K+F ++    + V+W
Sbjct: 511 GCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQI-PSPDDVAW 569

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
             +ISG ++N     AL  +  M   G + D  T A  + AC+ L AL+ G+QIH   +K
Sbjct: 570 TTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMK 629

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
                D FV  SL+ MYAKCG I++A  LF+  +   V  WN++I G A +GNA EA+  
Sbjct: 630 LNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNF 689

Query: 544 FEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLS 603
           F EM   GV PD VTFIGVLSACSH GL     K F+ M + Y +EP +EHY+C++D LS
Sbjct: 690 FNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALS 749

Query: 604 RAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYAL 663
           RAG + EA ++V  M  + +A ++ TLL ACR+  + + G    EKL  ++P  ++ Y L
Sbjct: 750 RAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVL 809

Query: 664 LSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNT 723
           LSN++A A +W+     R  M+    +K+PG SWI++KN++H F++GD     T  I N 
Sbjct: 810 LSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSHEETDLIYNK 869

Query: 724 LKTLAAQIR 732
           ++ +  +I+
Sbjct: 870 VEYVMKRIK 878



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 101/454 (22%), Positives = 198/454 (43%), Gaps = 43/454 (9%)

Query: 14  YVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP 73
           +V   N  I    K+G V  A ++F QM + + +++N++IS  A++G    + +LF  + 
Sbjct: 331 FVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLL 390

Query: 74  QRNLVSWNSMIAGYLHNDKVKE-----ARELFDKMFRP----DLFSWALMITCYTRKGEL 124
           +  L+     I   L      E      R++     +     D F    +I  Y++ G++
Sbjct: 391 RSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKM 450

Query: 125 EKARELFDLLPNKE--DTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----------NIV 172
           E+A  LF    N++  D A WNAM+ G+    NY EA +L   M  +          N  
Sbjct: 451 EEAELLFH---NQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAA 507

Query: 173 SWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQN 232
                L    +  ++H  +   +     D+   + +LD Y++  ++ SA K F +IP  +
Sbjct: 508 KAAGCLVRLQQGKQIH--AVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPD 565

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFI 288
            V+W T++SG   NG   +A   + QM +  V      +  ++ A      +E+  ++  
Sbjct: 566 DVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHA 625

Query: 289 EMPERN----PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDE 344
            + + N    P   T+++D Y +   +++A  L  +M  +++A   AMI G  Q+   +E
Sbjct: 626 NIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEE 685

Query: 345 ANQIFDKIG----THDVVCWNVMIKGYAQCGRMDEAINLFRQM-----VNKDIVTWNTMI 395
           A   F+++     T D V +  ++   +  G   +A   F  M     V  +I  ++ ++
Sbjct: 686 ALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLV 745

Query: 396 AGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
              ++   + +A K+   M    +   +  L++ 
Sbjct: 746 DALSRAGHIQEAEKVVSSMPFEASATMYRTLLNA 779



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 4/78 (5%)

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV---DVISWNSL 527
           L LG++ H + + SG   D +V N+LITMYAKCG + +A  LF D  P    D++++N++
Sbjct: 29  LILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLF-DITPQSDRDLVTYNAI 87

Query: 528 IAGYAINGNATEAIKLFE 545
           +A YA  G   +  K  E
Sbjct: 88  LAAYAHTGELHDVEKTHE 105


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 184/507 (36%), Positives = 290/507 (57%), Gaps = 48/507 (9%)

Query: 268 NAMIAAYVQRGQIEEAARLFIEMP--ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           NA+I  Y + G I  A ++F E+P  ER    W  M+ GY +     +A+ L D MP +N
Sbjct: 134 NAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERN 193

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
           +   TAM++GY + K ++ A + FD +    VV WN M+ GYAQ G  +EA+ LF +MVN
Sbjct: 194 VITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVN 253

Query: 386 KDI----VTWNTMIAG-----------------------------------YAQIRQMDD 406
             I     TW T+I+                                    YA+   +D 
Sbjct: 254 AGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLDS 313

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV-LMTQEGKKADHSTLACALSAC 465
           A K+F  M   RN V+WN++I+G+ QN     A+++F  ++T +    D  T+   +SAC
Sbjct: 314 ARKLFNTM-PGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISAC 372

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
            HL AL+LG  +     ++     +   N++I MY++CG +++A+ +F++    DV+S+N
Sbjct: 373 GHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYN 432

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
           +LI+G+A +G+  EAI L   M   G+ PD VTFIGVL+ACSH GL++ G K+FE + + 
Sbjct: 433 TLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD- 491

Query: 586 YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI 645
               P ++HYACM+DLL R G L++A   ++ M ++P+AG++G+LL A R+H+ ++LG +
Sbjct: 492 ----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGEL 547

Query: 646 AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705
           A  KL ELEP  +  + LLSN++A AGRW +VE++R +M+  G +K  G SW+E   ++H
Sbjct: 548 AANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLH 607

Query: 706 TFLSGDPKQCRTAEICNTLKTLAAQIR 732
            F+  D    R+ +I   L  L  ++R
Sbjct: 608 KFIVADRSHERSDDIYQLLIELRKKMR 634



 Score =  205 bits (522), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 136/433 (31%), Positives = 221/433 (51%), Gaps = 26/433 (6%)

Query: 68  LFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGE 123
           LF      N+  + SM+  Y H     +   ++++M     RPD F + ++I      G 
Sbjct: 56  LFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGTGGI 115

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS--KNIVSWNSMLSGY 181
              A  L   L +  D    NA++  YA++G    A+K+ D +P   + +  WN+M+SGY
Sbjct: 116 GFHAHVL--KLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGY 173

Query: 182 TKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
            K      A   F+ M ER+V++W  M+ GY ++ DL++A ++F  +PE++VVSW  MLS
Sbjct: 174 WKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLS 233

Query: 242 GYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPER---- 293
           GYA+NG   EA RLFD+M    +      W  +I+A   RG    AA L   + ++    
Sbjct: 234 GYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQL 293

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
           N    T ++D Y +   LD AR+L + MP +N+    +MI+GY QN +   A ++F ++ 
Sbjct: 294 NCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMI 353

Query: 354 THDVVCWN--VMIKGYAQCGRMD--EAIN-----LFRQMVNKDIVTWNTMIAGYAQIRQM 404
           T   +  +   M+   + CG +   E  N     L    +   I   N MI  Y++   M
Sbjct: 354 TAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSM 413

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSA 464
           +DA ++F+EM   R+ VS+N LISGF  +   ++A+ +   M + G + D  T    L+A
Sbjct: 414 EDAKRVFQEMAT-RDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTA 472

Query: 465 CAHLAALQLGRQI 477
           C+H   L+ GR++
Sbjct: 473 CSHAGLLEEGRKV 485



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/397 (26%), Positives = 182/397 (45%), Gaps = 88/397 (22%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMS--QKNTVTYNSMISAYAKNGRVNDARKLF 69
           GS  F +N  I    + G +  A K+F ++   ++    +N+M+S Y K      A+ LF
Sbjct: 127 GSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLF 186

Query: 70  EQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARE 129
           + MP+RN+++W +M+ GY     ++ AR  FD M    + SW  M++ Y + G  E+A  
Sbjct: 187 DVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALR 246

Query: 130 LFDLLPN---KEDTACW-----------------------------------NAMVAGYA 151
           LFD + N   + D   W                                    A++  YA
Sbjct: 247 LFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYA 306

Query: 152 KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM--------EERDVV 203
           K G+ + A+KL + MP +N+V+WNSM++GY +NG+  +A + F+ M        +E  +V
Sbjct: 307 KFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMV 366

Query: 204 S---------------W-----------------NLMLDGYVELDDLDSAWKFFQKIPEQ 231
           S               W                 N M+  Y     ++ A + FQ++  +
Sbjct: 367 SVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATR 426

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQM------PIRNVVAWNAMIAAYVQRGQIEEAAR 285
           +VVS+ T++SG+A +G  +EA  L   M      P R  V +  ++ A    G +EE  +
Sbjct: 427 DVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDR--VTFIGVLTACSHAGLLEEGRK 484

Query: 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
           +F  + +     +  M+D   R+ +L++A+R +++MP
Sbjct: 485 VFESIKDPAIDHYACMVDLLGRVGELEDAKRTMERMP 521



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 145/305 (47%), Gaps = 16/305 (5%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           Q N     +++  YAK G ++ ARKLF  MP RN+V+WNSMIAGY  N +   A ELF +
Sbjct: 292 QLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKE 351

Query: 103 M-----FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIG 154
           M       PD  +   +I+     G LE    +   L     K   +  NAM+  Y++ G
Sbjct: 352 MITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCG 411

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE----MHLASKFFEAMEERDVVSWNLMLD 210
           +  +AK++   M ++++VS+N+++SG+  +G     ++L S   E   E D V++  +L 
Sbjct: 412 SMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLT 471

Query: 211 GYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNA 269
                  L+   K F+ I +  +  +  M+    R G + +A+R  ++MP+  +   + +
Sbjct: 472 ACSHAGLLEEGRKVFESIKDPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGS 531

Query: 270 MIAAYVQRGQI---EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
           ++ A     Q+   E AA    E+   N  ++  + + Y    +  +  R+ + M    +
Sbjct: 532 LLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGV 591

Query: 327 AAQTA 331
              T 
Sbjct: 592 KKTTG 596



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 103/220 (46%), Gaps = 17/220 (7%)

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVD--VISWNSLIAGY 531
           G   H   +K G+ +D FV N++I MYA+ G I +A  +F +    +  V  WN++++GY
Sbjct: 114 GIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGY 173

Query: 532 AINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL 591
               +  +A  LF+ M    V    +T+  +++  + V  ++   + F+CM E   +   
Sbjct: 174 WKWESEGQAQWLFDVMPERNV----ITWTAMVTGYAKVKDLEAARRYFDCMPERSVVS-- 227

Query: 592 VEHYACMIDLLSRAGRLDEAFEMVKGM---KIKPNAGIWGTLLGACRMHQNIKLGRIAVE 648
              +  M+   ++ G  +EA  +   M    I+P+   W T++ AC    +  L    V 
Sbjct: 228 ---WNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVR 284

Query: 649 KLSELEPQKTSCY--ALLSNMHAEAGRWDEVEKVRVSMEG 686
            L +   Q  +C+    L +M+A+ G  D   K+  +M G
Sbjct: 285 TLHQKRIQ-LNCFVRTALLDMYAKFGDLDSARKLFNTMPG 323


>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Vitis vinifera]
          Length = 732

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 201/653 (30%), Positives = 335/653 (51%), Gaps = 63/653 (9%)

Query: 137 KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEA 196
             D+    +++  Y+K G+   A+K+ D M  +N+V W +M+  YT+ GE  +A   +  
Sbjct: 80  SSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNI 139

Query: 197 MEERDV----VSWNLMLDGYVELDDLDS------AWKFFQKIPEQNVVSWVTMLSGYARN 246
           M  + +    V+   +L G +EL  L         + F   +   N     +ML+ Y + 
Sbjct: 140 MRRQGIQPSSVTMLGLLSGVLELVHLQCLHACVIQYGFGSDVALAN-----SMLNVYCKC 194

Query: 247 GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP--------------- 291
           GR+ +A+ LF+ M  R+V++WN++++ Y Q G I E  +L I M                
Sbjct: 195 GRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLV 254

Query: 292 ------------------------ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
                                   E++    T++I  Y++   ++ A R+ + M +K++ 
Sbjct: 255 SAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVI 314

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG-YAQCGRMDE-----AIN--L 379
           + TAMISG VQN   D A  +F ++    V+     I    A C  +       +++  +
Sbjct: 315 SWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYI 374

Query: 380 FRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDA 439
            RQ +  DI + N+++  YA+   ++ +  +F+ M  RR+ VSWNA++SG  QN     A
Sbjct: 375 LRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRM-SRRDIVSWNAIVSGHAQNGHLCKA 433

Query: 440 LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
           L +F  M +  ++ D  T+   L ACA + AL  G+ IH+   KS     + +  +L+ M
Sbjct: 434 LLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDM 493

Query: 500 YAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTF 559
           Y+KCG + +A+  F      D++SW+S+IAGY  +G    A++++ + +  G+ P+ V +
Sbjct: 494 YSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIY 553

Query: 560 IGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMK 619
           + +LSACSH GLVD GL  F  MT+ + IEP +EH AC++DLLSRAGR++EA+   K M 
Sbjct: 554 LSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMF 613

Query: 620 IKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEK 679
            KP+  + G LL ACR   N++LG I   ++  L+P     Y  L++ +A   RWD V +
Sbjct: 614 PKPSMDVLGILLDACRTTGNVELGDIVAREIVILKPANAGNYVQLAHSYASMKRWDGVGE 673

Query: 680 VRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           V   M+    +K PG S+IE+   I TF +      +  EI   LK L +++R
Sbjct: 674 VWTQMKSLHLKKLPGWSFIELHGTITTFFTDHSSHPQFEEIMLVLKILGSEMR 726



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 194/399 (48%), Gaps = 37/399 (9%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           NSM++ Y K GRV DA+ LFE M  R+++SWNS+++GY     ++E  +L  +M      
Sbjct: 185 NSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIE 244

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL 162
           PD  ++  +++    + +L   + +   +     ++D+    +++  Y K GN N A ++
Sbjct: 245 PDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRI 304

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLD---------GYV 213
            + M  K+++SW +M+SG  +N    +A   F  M +  V+     +          G  
Sbjct: 305 FEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSF 364

Query: 214 ELDDLDSAWKFFQK----IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNA 269
            L      +   Q+    IP QN  S VTM   YA+ G + ++  +FD+M  R++V+WNA
Sbjct: 365 PLGTSVHGYILRQRIKLDIPSQN--SLVTM---YAKCGHLEQSCSVFDRMSRRDIVSWNA 419

Query: 270 MIAAYVQRGQIEEAARLFIEM--PERNPVSWT--TMIDGYVRIAKLDEARRLLDQMPYKN 325
           +++ + Q G + +A  LF EM    + P S T  +++     I  L + + + + +    
Sbjct: 420 IVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSC 479

Query: 326 IAA----QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
           +       TA++  Y +   +  A + FD++   D+V W+ +I GY   G+ + A+ ++ 
Sbjct: 480 LGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYS 539

Query: 382 QMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
             ++  I    V + ++++  +    +D  +  F  M K
Sbjct: 540 DFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTK 578



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 96/437 (21%), Positives = 171/437 (39%), Gaps = 129/437 (29%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS V   N  +    K GRVE+A  +F  M  ++ +++NS++S YA+ G + +  +L  +
Sbjct: 178 GSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIR 237

Query: 72  M------PQR----NLVSW-----------------------------NSMIAGYLHNDK 92
           M      P +    +LVS                               S+I  YL    
Sbjct: 238 MKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGN 297

Query: 93  VKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF------DLLPN---------- 136
           V  A  +F+ M   D+ SW  MI+   +    + A  +F       ++P+          
Sbjct: 298 VNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAA 357

Query: 137 ----------------------KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSW 174
                                 K D    N++V  YAK G+  ++  + D M  ++IVSW
Sbjct: 358 CAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSW 417

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEER-------DVVS---------------W------- 205
           N+++SG+ +NG +  A   F  M +         VVS               W       
Sbjct: 418 NAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTK 477

Query: 206 ----------NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRL 255
                       ++D Y +  DL SA K F ++P+Q++VSW ++++GY  +G+   A R+
Sbjct: 478 SCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRM 537

Query: 256 FDQM------PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDG 304
           +         P  N V + ++++A    G +++    F  M +   +         ++D 
Sbjct: 538 YSDFLHTGIQP--NHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDL 595

Query: 305 YVRIAKLDEARRLLDQM 321
             R  +++EA     +M
Sbjct: 596 LSRAGRVEEAYSFYKRM 612



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 141/305 (46%), Gaps = 20/305 (6%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           I  Q  + +  + NS+++ YAK G +  +  +F++M +R++VSWN++++G+  N  + +A
Sbjct: 374 ILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKA 433

Query: 97  RELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACW---NAMVAG 149
             LF++M     RPD  +   ++      G L + + + + +       C     A+V  
Sbjct: 434 LLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDM 493

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE----MHLASKFFEAMEERDVVSW 205
           Y+K G+   A+K  D MP +++VSW+S+++GY  +G+    + + S F     + + V +
Sbjct: 494 YSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIY 553

Query: 206 NLMLDGYVELDDLDSAWKFFQKIP-----EQNVVSWVTMLSGYARNGRMLEARRLFDQM- 259
             +L        +D    FF  +      E  +     ++   +R GR+ EA   + +M 
Sbjct: 554 LSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMF 613

Query: 260 PIRNVVAWNAMIAAYVQRGQIEEA---ARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
           P  ++     ++ A    G +E     AR  + +   N  ++  +   Y  + + D    
Sbjct: 614 PKPSMDVLGILLDACRTTGNVELGDIVAREIVILKPANAGNYVQLAHSYASMKRWDGVGE 673

Query: 317 LLDQM 321
           +  QM
Sbjct: 674 VWTQM 678



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 106/256 (41%), Gaps = 30/256 (11%)

Query: 420 TVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHH 479
           T S+NA+I+         D L  +  M       D  T    + AC  L     G   H 
Sbjct: 13  TKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQ 72

Query: 480 LAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATE 539
             I  GY +D ++  SLI  Y+K G  Q+A  +F   D  +V+ W ++I  Y   G    
Sbjct: 73  RVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDV 132

Query: 540 AIKLFEEMVMEGVAPDPVTFIGVLSA--------CSHVGLVDGG----LKLFECMTEVYA 587
           A  ++  M  +G+ P  VT +G+LS         C H  ++  G    + L   M  VY 
Sbjct: 133 AFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACVIQYGFGSDVALANSMLNVYC 192

Query: 588 IEPLVEHYACMIDLL---------------SRAGRLDEAFEMVKGMK---IKPNAGIWGT 629
               VE    + +L+               ++ G + E  +++  MK   I+P+   +G+
Sbjct: 193 KCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGS 252

Query: 630 LLGACRMHQNIKLGRI 645
           L+ A  M   + +G++
Sbjct: 253 LVSAAAMQSKLGVGKM 268


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 192/608 (31%), Positives = 318/608 (52%), Gaps = 53/608 (8%)

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSW 205
           Y + G   +A+++ D M  +N+ SW +++  Y   G+     K F  M       D   +
Sbjct: 55  YCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVF 114

Query: 206 NLMLDGYVELDDL---DSAWKFFQKIP-EQNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
             +     EL +       + +   I  E N     ++L  + + GRM  ARR F+++  
Sbjct: 115 PKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEF 174

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLF----IEMPERNPVSWTTMIDGYVRIAKLDEARRL 317
           ++V  WN M++ Y  +G+ ++A  +F    +E  + N ++  + +     ++ L   R  
Sbjct: 175 KDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGRE- 233

Query: 318 LDQMPYKNIAAQTAMISGY-VQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
                          I GY ++ + +D            D++  N ++  YA+C  ++ A
Sbjct: 234 ---------------IHGYCIKVEELDS-----------DLLVGNSLVDYYAKCRSVEVA 267

Query: 377 INLFRQMVNKDIVTWNTMIA--GYAQ----------IRQMDDAVKIFEEMGKRRNTVSWN 424
              F  +   D+V+WN M+A  G+ Q           ++M  A  +F E+  R + V WN
Sbjct: 268 RRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTR-DVVVWN 326

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
           ++IS   Q+   ++AL +   M     + +  T+  AL AC+ LAAL+ G++IH   I+ 
Sbjct: 327 SIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRC 386

Query: 485 GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLF 544
           G     F+ NSLI MY +CG IQ +  +F      D++SWN +I+ Y ++G   +A+ LF
Sbjct: 387 GLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLF 446

Query: 545 EEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSR 604
           ++    G+ P+ +TF  +LSACSH GL++ G K F+ M   YA++P VE YACM+DLLSR
Sbjct: 447 QQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSR 506

Query: 605 AGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALL 664
           AG+ +E  E ++ M  +PNA +WG+LLGACR+H N  L   A   L ELEPQ +  Y L+
Sbjct: 507 AGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLM 566

Query: 665 SNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTL 724
           +N+++ AGRW++  K+R  M+  G  K PGCSWIEVK ++H+F+ GD       +I   +
Sbjct: 567 ANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKM 626

Query: 725 KTLAAQIR 732
           ++L   I+
Sbjct: 627 ESLYFDIK 634



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 140/567 (24%), Positives = 241/567 (42%), Gaps = 94/567 (16%)

Query: 32  EEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHND 91
           +E I+I++ + QK    YN  +        V +   + E +  R       ++  Y    
Sbjct: 7   DECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSR-------LLEVYCQTG 59

Query: 92  KVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVA 148
            V++AR +FDKM   ++FSW  ++  Y   G+ E+  +LF L+ N   + D   +  +  
Sbjct: 60  CVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFK 119

Query: 149 GYAKIGNYNEAKKLLDAMPS----KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS 204
             +++ NY   K + D M S     N     S+L  + K G M +A +FFE +E +DV  
Sbjct: 120 ACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFM 179

Query: 205 WNLMLDGYVELDDLDSAWKFFQKIPEQNV----------VSWVTMLSGYARNGRMLEARR 254
           WN+M+ GY    +   A   F+K+  + V          VS  T LS   R+GR +    
Sbjct: 180 WNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLS-LLRHGREIHGYC 238

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTM--IDGYVRIAKLD 312
           +  +    +++  N+++  Y +   +E A R F  + + + VSW  M  + G+ +     
Sbjct: 239 IKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGK 298

Query: 313 EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGR 372
            A                         +RM  A  +F ++ T DVV WN +I   AQ GR
Sbjct: 299 AALEFF---------------------QRMHIACSVFSELSTRDVVVWNSIISACAQSGR 337

Query: 373 MDEAINLFRQM----VNKDIVT-----------------------------------WNT 393
              A++L R+M    V  + VT                                    N+
Sbjct: 338 SVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNS 397

Query: 394 MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA 453
           +I  Y +   +  + +IF+ M  +R+ VSWN +IS +  + F +DA+ +F      G K 
Sbjct: 398 LIDMYGRCGSIQKSRRIFDLM-PQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKP 456

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN--SLITMYAKCGRIQNAEL 511
           +H T    LSAC+H   ++ G +   + +K+ Y  D  V     ++ + ++ G+  N  L
Sbjct: 457 NHITFTNLLSACSHSGLIEEGWKYFKM-MKTEYAMDPAVEQYACMVDLLSRAGQF-NETL 514

Query: 512 LFKDADPVD--VISWNSLIAGYAINGN 536
            F +  P +     W SL+    I+ N
Sbjct: 515 EFIEKMPFEPNAAVWGSLLGACRIHCN 541



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 116/480 (24%), Positives = 203/480 (42%), Gaps = 106/480 (22%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL--------- 77
           ++G VE+A ++F +MS++N  ++ +++  Y   G   +  KLF  M    +         
Sbjct: 57  QTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPK 116

Query: 78  -------------------------VSWNSMIAG-----YLHNDKVKEARELFDKMFRPD 107
                                       NS + G     ++   ++  AR  F+++   D
Sbjct: 117 VFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKD 176

Query: 108 LFSWALMITCYTRKGELEKARELFDLL------PNKED-----TACWNAMVAGYAK-IGN 155
           +F W +M++ YT KGE +KA  +F  +      PN        +AC N  +  + + I  
Sbjct: 177 VFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHG 236

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML--DGYV 213
           Y    + LD+    +++  NS++  Y K   + +A + F  +++ D+VSWN ML   G+ 
Sbjct: 237 YCIKVEELDS----DLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFT 292

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
           +  D  +A +FFQ                     RM  A  +F ++  R+VV WN++I+A
Sbjct: 293 QYGDGKAALEFFQ---------------------RMHIACSVFSELSTRDVVVWNSIISA 331

Query: 274 YVQRGQIEEAARLFIEMPERN-PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAM 332
             Q G+   A  L  EM   N  V+  TM+      +KL   R             Q   
Sbjct: 332 CAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALR-------------QGKE 378

Query: 333 ISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWN 392
           I  ++    +D  N I            N +I  Y +CG + ++  +F  M  +D+V+WN
Sbjct: 379 IHQFIIRCGLDTCNFIL-----------NSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWN 427

Query: 393 TMIAGYAQIRQMDDAVKIFEE---MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
            MI+ Y       DAV +F++   MG + N +++  L+S    +    +  K F +M  E
Sbjct: 428 VMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTE 487



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 141/287 (49%), Gaps = 26/287 (9%)

Query: 30  RVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL-VSWNSMIAGYL 88
           R+  A  +FS++S ++ V +NS+ISA A++GR  +A  L  +M   N+ V+  +M++   
Sbjct: 306 RMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALP 365

Query: 89  HNDK---VKEARELFDKMFRPDL----FSWALMITCYTRKGELEKARELFDLLPNKEDTA 141
              K   +++ +E+   + R  L    F    +I  Y R G ++K+R +FDL+P + D  
Sbjct: 366 ACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQR-DLV 424

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAMPS----KNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            WN M++ Y   G   +A  L     +     N +++ ++LS  + +G +    K+F+ M
Sbjct: 425 SWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMM 484

Query: 198 E-----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSWVTMLSGYAR---NGR 248
           +     +  V  +  M+D        +   +F +K+P E N   W ++L G  R   N  
Sbjct: 485 KTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLL-GACRIHCNPD 543

Query: 249 MLE--ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           + E  AR LF+  P ++   +  M   Y   G+ E+AA++   M ER
Sbjct: 544 LAEYAARYLFELEP-QSSGNYVLMANIYSAAGRWEDAAKIRCLMKER 589



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 10/179 (5%)

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
           A  L  C  L  L+LG Q+H   + +G     F+G+ L+ +Y + G +++A  +F     
Sbjct: 14  ASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSE 73

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
            +V SW +++  Y   G+  E IKLF  MV EGV PD   F  V  ACS +     G  +
Sbjct: 74  RNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDV 133

Query: 579 FECMTEVYAIEPLVEHYAC----MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
           ++     Y +    E  +C    ++D+  + GR+D A    + ++ K +  +W  ++  
Sbjct: 134 YD-----YMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-DVFMWNIMVSG 186



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 96/199 (48%), Gaps = 12/199 (6%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP-- 73
           F  N  I   G+ G ++++ +IF  M Q++ V++N MIS Y  +G   DA  LF+Q    
Sbjct: 393 FILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTM 452

Query: 74  --QRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEK 126
             + N +++ ++++   H+  ++E  + F  M       P +  +A M+   +R G+  +
Sbjct: 453 GLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNE 512

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK---KLLDAMPSKNIVSWNSMLSGYTK 183
             E  + +P + + A W +++       N + A+   + L  +  ++  ++  M + Y+ 
Sbjct: 513 TLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSA 572

Query: 184 NGEMHLASKFFEAMEERDV 202
            G    A+K    M+ER V
Sbjct: 573 AGRWEDAAKIRCLMKERGV 591


>gi|328774747|gb|AEB39773.1| pentatricopeptide repeat protein 43 [Funaria hygrometrica]
          Length = 1073

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 220/739 (29%), Positives = 386/739 (52%), Gaps = 73/739 (9%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----P 106
           ++I+ Y K G +  ARK+F +M +RN+VSW +MI+GY+ +   +EA  LF K+ R    P
Sbjct: 241 ALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSREALALFRKLIRSGIQP 300

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLL 163
           +  S+A ++   T   +L +  +L   +     +++    NA+++ Y++ G+   A+++ 
Sbjct: 301 NKVSFASILGACTNPNDLGEGLKLHAYIKQAGLEQEVLVGNALISMYSRCGSLANARQVF 360

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLD 219
           D + S N  +WN+M++GY + G M  A + F AME++    D  ++  +L    +  DLD
Sbjct: 361 DNLRSLNRTTWNAMIAGYGE-GLMEEAFRLFRAMEQKGFQPDKFTYASLLAICADRADLD 419

Query: 220 SAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
              +   +I     + ++     ++S YA+ G   EAR++F+QMP RNV++WNA I+   
Sbjct: 420 RGKELHSQIASTGWQTDLTVATALISMYAKCGSPEEARKVFNQMPERNVISWNAFISCCC 479

Query: 276 QRGQIEEAARLFIEM--PERNP--VSWTTMIDGYVRIAKLDEARRLLDQMP----YKNIA 327
           +    +EA + F +M   + NP  +++ T+++       L+  R +  ++       N  
Sbjct: 480 RHDLGKEAFQAFKQMRRDDVNPDHITFITLLNSCTSPEDLERGRYIHGKINQWGMLSNNH 539

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM---- 383
              A+IS Y +   + +A ++F +I   D+  WN MI    Q G    A +LFR+     
Sbjct: 540 VANALISMYGRCGNLADAREVFYRIRRRDLGSWNAMIAANVQHGANGSAFDLFRKYRSEG 599

Query: 384 -----------------------------------VNKDIVTWNTMIAGYAQIRQMDDAV 408
                                                KDI    T+I  Y++   + DA 
Sbjct: 600 GKGDKYTFINVLRAVANLEDLDAGRMIHGLVEKGGFGKDIRVLTTLIKMYSKCGSLRDAE 659

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
            +F  + + ++ V WNA+++ +  ++   DALK+F  M  EG   D ST + AL+ACA L
Sbjct: 660 NVFSTV-QEKDVVCWNAMLAAYAHSDRGQDALKLFQQMQLEGVNPDSSTYSTALNACARL 718

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
            A++ G++IH    ++G   D  V NSLI MY++CG + +A+ +F+     D+ SWN+LI
Sbjct: 719 TAVEHGKKIHAQLKEAGMETDTRVSNSLIEMYSRCGCLCSAKQVFEKMLSRDINSWNALI 778

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI 588
           AGY  NG    A++ +E M+   + P+  TF  +LS+ + +G  +      E + + + +
Sbjct: 779 AGYCQNGQGNIALEYYELMLRASIVPNKATFTSILSSYAQLGEEEQAFDFLESIKKEWNM 838

Query: 589 EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVE 648
           EP  +HYA M+  L RAG L EA E ++ +  +  A +W +LL ACR+H N++L   AVE
Sbjct: 839 EPSEQHYAYMVAALGRAGLLKEAEEFIEEISAESAALMWESLLVACRIHLNVELAETAVE 898

Query: 649 KLSELEPQKTS--CYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHT 706
            L + + Q +   C  L+S ++A AGRW++V  ++ +M+ +G      C+ IEV ++ H 
Sbjct: 899 HLLDAKAQASPAVCEQLMS-IYAAAGRWEDVSVLKTTMQEAGLVALKSCT-IEVNSEFHN 956

Query: 707 FLSG--DPK---QCRTAEI 720
           F++    P+   QC+  E+
Sbjct: 957 FIANHLSPQIGVQCKIEEL 975



 Score =  249 bits (637), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 200/710 (28%), Positives = 324/710 (45%), Gaps = 146/710 (20%)

Query: 93  VKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVA 148
           + E +++ D M    F+PD++   ++I+ Y++ G +E A  +F  + +K D   WNAM++
Sbjct: 116 LAEGKKVHDHMRSAQFKPDIYLNNMLISMYSKCGSIEDANNVFQAMEDK-DVVSWNAMIS 174

Query: 149 GYAKIGNYNEAKKLLDAM------PSKNIVSWNSMLSG---------------------- 180
           GYA  G   EA  L   M      P++N  ++ S+LS                       
Sbjct: 175 GYALHGRDQEAADLFYQMQREGLKPNQN--TFISILSACQSPIALEFGEQIHSRIAKAGY 232

Query: 181 -------------YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK 227
                        Y K G + LA K F  M ER+VVSW  M+ GYV+  D   A   F+K
Sbjct: 233 ESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSREALALFRK 292

Query: 228 I------P---------------------------------EQNVVSWVTMLSGYARNGR 248
           +      P                                 EQ V+    ++S Y+R G 
Sbjct: 293 LIRSGIQPNKVSFASILGACTNPNDLGEGLKLHAYIKQAGLEQEVLVGNALISMYSRCGS 352

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDG 304
           +  AR++FD +   N   WNAMIA Y + G +EEA RLF  M ++    +  ++ +++  
Sbjct: 353 LANARQVFDNLRSLNRTTWNAMIAGYGE-GLMEEAFRLFRAMEQKGFQPDKFTYASLLAI 411

Query: 305 YVRIAKLDEARRLLDQMP----YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW 360
               A LD  + L  Q+       ++   TA+IS Y +    +EA ++F+++   +V+ W
Sbjct: 412 CADRADLDRGKELHSQIASTGWQTDLTVATALISMYAKCGSPEEARKVFNQMPERNVISW 471

Query: 361 NVMIKGYAQCGRMD---EAINLFRQM----VNKDIVTW---------------------- 391
           N  I   + C R D   EA   F+QM    VN D +T+                      
Sbjct: 472 NAFI---SCCCRHDLGKEAFQAFKQMRRDDVNPDHITFITLLNSCTSPEDLERGRYIHGK 528

Query: 392 -------------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
                        N +I+ Y +   + DA ++F  + +RR+  SWNA+I+  +Q+  +  
Sbjct: 529 INQWGMLSNNHVANALISMYGRCGNLADAREVFYRI-RRRDLGSWNAMIAANVQHGANGS 587

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
           A  +F     EG K D  T    L A A+L  L  GR IH L  K G+  D+ V  +LI 
Sbjct: 588 AFDLFRKYRSEGGKGDKYTFINVLRAVANLEDLDAGRMIHGLVEKGGFGKDIRVLTTLIK 647

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           MY+KCG +++AE +F      DV+ WN+++A YA +    +A+KLF++M +EGV PD  T
Sbjct: 648 MYSKCGSLRDAENVFSTVQEKDVVCWNAMLAAYAHSDRGQDALKLFQQMQLEGVNPDSST 707

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
           +   L+AC+ +  V+ G K+   + E   +E        +I++ SR G L  A ++ + M
Sbjct: 708 YSTALNACARLTAVEHGKKIHAQLKEA-GMETDTRVSNSLIEMYSRCGCLCSAKQVFEKM 766

Query: 619 KIKPNAGIWGTLL-GACRMHQ-NIKLGRIAVEKLSELEPQKTSCYALLSN 666
            +  +   W  L+ G C+  Q NI L    +   + + P K +  ++LS+
Sbjct: 767 -LSRDINSWNALIAGYCQNGQGNIALEYYELMLRASIVPNKATFTSILSS 815



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 181/380 (47%), Gaps = 73/380 (19%)

Query: 340 KRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMI 395
           K + E  ++ D + +     D+   N++I  Y++CG +++A N+F+ M +KD+V+WN MI
Sbjct: 114 KSLAEGKKVHDHMRSAQFKPDIYLNNMLISMYSKCGSIEDANNVFQAMEDKDVVSWNAMI 173

Query: 396 AGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADH 455
           +GYA                           + G  Q     +A  +F  M +EG K + 
Sbjct: 174 SGYA---------------------------LHGRDQ-----EAADLFYQMQREGLKPNQ 201

Query: 456 STLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD 515
           +T    LSAC    AL+ G QIH    K+GY +D+ V  +LI MY KCG ++ A  +F +
Sbjct: 202 NTFISILSACQSPIALEFGEQIHSRIAKAGYESDVNVSTALINMYCKCGSLELARKVFNE 261

Query: 516 ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
               +V+SW ++I+GY  +G++ EA+ LF +++  G+ P+ V+F  +L AC++   +  G
Sbjct: 262 MRERNVVSWTAMISGYVQHGDSREALALFRKLIRSGIQPNKVSFASILGACTNPNDLGEG 321

Query: 576 LKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL--------------------------- 608
           LKL   + +   +E  V     +I + SR G L                           
Sbjct: 322 LKLHAYIKQA-GLEQEVLVGNALISMYSRCGSLANARQVFDNLRSLNRTTWNAMIAGYGE 380

Query: 609 ---DEAFEMVKGMKIK---PNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK--TSC 660
              +EAF + + M+ K   P+   + +LL  C    ++  G+    +++    Q   T  
Sbjct: 381 GLMEEAFRLFRAMEQKGFQPDKFTYASLLAICADRADLDRGKELHSQIASTGWQTDLTVA 440

Query: 661 YALLSNMHAEAGRWDEVEKV 680
            AL+S M+A+ G  +E  KV
Sbjct: 441 TALIS-MYAKCGSPEEARKV 459



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 118/222 (53%), Gaps = 4/222 (1%)

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG 504
           L+ + G +A+ +  A  L  C    +L  G+++H     + +  D+++ N LI+MY+KCG
Sbjct: 90  LLGKRGVQANLNFYARRLQQCVLAKSLAEGKKVHDHMRSAQFKPDIYLNNMLISMYSKCG 149

Query: 505 RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLS 564
            I++A  +F+  +  DV+SWN++I+GYA++G   EA  LF +M  EG+ P+  TFI +LS
Sbjct: 150 SIEDANNVFQAMEDKDVVSWNAMISGYALHGRDQEAADLFYQMQREGLKPNQNTFISILS 209

Query: 565 ACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNA 624
           AC     ++ G ++   + +    E  V     +I++  + G L+ A ++   M+ + N 
Sbjct: 210 ACQSPIALEFGEQIHSRIAKA-GYESDVNVSTALINMYCKCGSLELARKVFNEMR-ERNV 267

Query: 625 GIWGTLLGACRMHQNIKLGRIAVEKL--SELEPQKTSCYALL 664
             W  ++     H + +       KL  S ++P K S  ++L
Sbjct: 268 VSWTAMISGYVQHGDSREALALFRKLIRSGIQPNKVSFASIL 309


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 205/572 (35%), Positives = 303/572 (52%), Gaps = 54/572 (9%)

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
           Y +   L  A K FQ I + NV S+  +++ YA+  R L A +LFDQ+P  ++V++N +I
Sbjct: 53  YSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLI 112

Query: 272 AAYVQRGQIEEAARLFIEMPERN--------PVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
           +AY   G+   A  LF  M E              T   D    I +L           Y
Sbjct: 113 SAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITACCDDVGLIGQLHSVAVSSGFDSY 172

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIFDKIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
             ++   A+++ Y +N  +D+A ++F  +G   D V WN MI  Y Q     +A+ LF++
Sbjct: 173 --VSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQE 230

Query: 383 MV----NKDIVTWNTMIAGYAQIRQ----------------------------------- 403
           MV    N D+ T  +++  +  +                                     
Sbjct: 231 MVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGG 290

Query: 404 -MDDAVKIFEEMGKRRNTVSWNALISGFLQNE-FHLDALKIFVLMTQEGKKADHSTLACA 461
            M D  K+FEE+    + V WN ++SG+ QNE F  DAL+ F  M   G + +  +  C 
Sbjct: 291 GMSDCRKVFEEI-TEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCV 349

Query: 462 LSACAHLAALQLGRQIHHLAIKSGY-VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVD 520
           +SAC++L++   G+QIH LA+KS    N + V N+LI MY+KCG +Q+A  LF      +
Sbjct: 350 ISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHN 409

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE 580
            +S NS+IAGYA +G   E++ LF+ M+   +AP  +TFI VLSAC+H G V+ G   F 
Sbjct: 410 TVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFN 469

Query: 581 CMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNI 640
            M E + IEP  EHY+CMIDLL RAG+L EA  ++  M   P +  W +LLGACR H NI
Sbjct: 470 MMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNI 529

Query: 641 KLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEV 700
           +L   A  ++ +LEP   + Y +LSNM+A AGRW+EV  VR  M   G +K+PGCSWIEV
Sbjct: 530 ELAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEV 589

Query: 701 KNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           K +IH F++ D       EI   L+ ++ +++
Sbjct: 590 KKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMK 621



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 113/434 (26%), Positives = 215/434 (49%), Gaps = 29/434 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            +  N  I    K GR+  A K F  +S  N  ++N++I+AYAK  R   A +LF+Q+P+
Sbjct: 43  TYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPE 102

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMIT-CYTRKGELEKARE 129
            +LVS+N++I+ Y    +   A  LF  M       D F+ + +IT C    G + +   
Sbjct: 103 PDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITACCDDVGLIGQLHS 162

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS-KNIVSWNSMLSGYTKNGEMH 188
           +          +  NA++  Y K G+ ++AK++   M   ++ VSWNSM+  Y ++ E  
Sbjct: 163 VAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGS 222

Query: 189 LASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPE----QNVVSWVTML 240
            A   F+ M  R    D+ +   +L  +  L+DL    +F  ++ +    QN      ++
Sbjct: 223 KALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLI 282

Query: 241 SGYAR-NGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ-IEEAARLFIEMP----ERN 294
             Y++  G M + R++F+++   ++V WN M++ Y Q  + +E+A   F +M       N
Sbjct: 283 DLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPN 342

Query: 295 PVSWTTMIDGYVRIAKLDEARR-----LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF 349
             S+  +I     ++   + ++     L   +P   I+   A+I+ Y +   + +A ++F
Sbjct: 343 DCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLF 402

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI----VTWNTMIAGYAQIRQMD 405
           D++  H+ V  N MI GYAQ G   E+++LF+ M+ + I    +T+ ++++  A   +++
Sbjct: 403 DRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVE 462

Query: 406 DAVKIFEEMGKRRN 419
           +    F  M ++ N
Sbjct: 463 EGWNYFNMMKEKFN 476



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 144/276 (52%), Gaps = 13/276 (4%)

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
           N  I  Y++CGR+  A   F+ + + ++ ++N +IA YA+  +   A ++F+++    + 
Sbjct: 47  NHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQI-PEPDL 105

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
           VS+N LIS +        AL +F  M + G   D  TL+  ++AC     L +G Q+H +
Sbjct: 106 VSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVITACCDDVGL-IG-QLHSV 163

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV-DVISWNSLIAGYAINGNATE 539
           A+ SG+ + + V N+L+T Y K G + +A+ +F     + D +SWNS+I  Y  +   ++
Sbjct: 164 AVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSK 223

Query: 540 AIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMI 599
           A+ LF+EMV  G+  D  T   VL+A + +  + GGL+    + +           + +I
Sbjct: 224 ALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKT-GFHQNSHVGSGLI 282

Query: 600 DLLSRAG----RLDEAFEMVKGMKIKPNAGIWGTLL 631
           DL S+ G       + FE +     +P+  +W T++
Sbjct: 283 DLYSKCGGGMSDCRKVFEEIT----EPDLVLWNTMV 314



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/395 (22%), Positives = 164/395 (41%), Gaps = 94/395 (23%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQ-KNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           SYV   N  +T  GK+G +++A ++F  M   ++ V++NSMI AY ++   + A  LF++
Sbjct: 171 SYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQE 230

Query: 72  MPQRNL----VSWNSMIAGY-----------LHNDKVK---------------------- 94
           M +R L     +  S++  +            H   +K                      
Sbjct: 231 MVRRGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGG 290

Query: 95  ---EARELFDKMFRPDLFSWALMITCYTRKGE-LEKARELFDLL------PNKEDTACW- 143
              + R++F+++  PDL  W  M++ Y++  E LE A E F  +      PN     C  
Sbjct: 291 GMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVI 350

Query: 144 --------------------------------NAMVAGYAKIGNYNEAKKLLDAMPSKNI 171
                                           NA++A Y+K GN  +A++L D M   N 
Sbjct: 351 SACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNT 410

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQK 227
           VS NSM++GY ++G    +   F+ M ER +    +++  +L        ++  W +F  
Sbjct: 411 VSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNM 470

Query: 228 IPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE 281
           + E+  +      +  M+    R G++ EA  L  +MP     + W +++ A    G IE
Sbjct: 471 MKEKFNIEPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIE 530

Query: 282 ---EAARLFIEMPERNPVSWTTMIDGYVRIAKLDE 313
              +AA   +++   N   +  + + Y    + +E
Sbjct: 531 LAVKAANQVLQLEPSNAAPYVVLSNMYASAGRWEE 565



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 4/124 (3%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           L  C     L  G+ +H L IKS      +  N  I +Y+KCGR+  A   F+D    +V
Sbjct: 15  LKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNV 74

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC 581
            S+N++IA YA       A +LF+++      PD V++  ++SA +  G     L LF  
Sbjct: 75  FSFNAIIAAYAKESRPLIAHQLFDQI----PEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 582 MTEV 585
           M E+
Sbjct: 131 MREM 134


>gi|356519999|ref|XP_003528655.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
           mitochondrial-like [Glycine max]
          Length = 629

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 216/665 (32%), Positives = 332/665 (49%), Gaps = 83/665 (12%)

Query: 105 RPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLD 164
           R  LF     I    R G++  AR+LFD +P+K D+  WNAM+  Y+ +G Y ++  L  
Sbjct: 2   RSYLFRTTPKIVALARSGQISDARKLFDEIPHK-DSVAWNAMLTAYSHVGLYQQSLSLFG 60

Query: 165 AM----PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW--------NLMLDGY 212
            M       +  S++++L+     G  ++  +F   +    VVS         N ++D Y
Sbjct: 61  CMRISHSKPDNFSFSAVLNACACAGASYV--RFGATLHALVVVSGYLSSLPVANSLIDMY 118

Query: 213 VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
            +    D A K F +  + N V+W +++  YA + R+  A  LF  MP R V+AWN MI 
Sbjct: 119 GKCLLPDDARKVFDETSDSNEVTWCSLMFAYANSCRLGVALELFRSMPERVVIAWNIMIV 178

Query: 273 AYVQRGQIEEAARLFIEMPER--NPVSWT-----------------TMIDGYVRIAKLDE 313
            + +RG++E    LF EM      P  WT                  M+ G+V  +    
Sbjct: 179 GHARRGEVEACLHLFKEMCGSLCQPDQWTFSALINACAVSMEMLYGCMVHGFVIKSGWSS 238

Query: 314 ARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRM 373
           A      M  KN     +M+S Y + +  D+A ++F+  G  + V WN +I  + + G  
Sbjct: 239 A------MEVKN-----SMLSFYAKLECQDDAMKVFNSFGCFNQVSWNAIIDAHMKLGDT 287

Query: 374 DEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433
            +A   F++   ++IV+W +MIAGY +    + A+ +F ++   RN+V  + L++G    
Sbjct: 288 QKAFLAFQKAPERNIVSWTSMIAGYTRNGNGELALSMFLDL--TRNSVQLDDLVAG---- 341

Query: 434 EFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG 493
                                       L ACA LA L  GR +H   I+ G    L+VG
Sbjct: 342 --------------------------AVLHACASLAILVHGRMVHGCIIRHGLDKYLYVG 375

Query: 494 NSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA 553
           NSL+ MYAKCG I+ + L F D    D+ISWNS++  + ++G A EAI L+ EMV  GV 
Sbjct: 376 NSLVNMYAKCGDIKGSRLAFHDILDKDLISWNSMLFAFGLHGRANEAICLYREMVASGVK 435

Query: 554 PDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFE 613
           PD VTF G+L  CSH+GL+  G   F+ M   + +   ++H ACM+D+L R G + EA  
Sbjct: 436 PDEVTFTGLLMTCSHLGLISEGFAFFQSMCLEFGLSHGMDHVACMVDMLGRGGYVAEARS 495

Query: 614 MV----KGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHA 669
           +     K    + N+     LLGAC  H ++  G    E L  LEP+K   Y LLSN++ 
Sbjct: 496 LAEKYSKTSITRTNS--CEVLLGACYAHGDLGTGSSVGEYLKNLEPEKEVGYVLLSNLYC 553

Query: 670 EAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAA 729
            +G+W E E VR +M   G +K PG SWIE++N++ +F+SG+      A+I   L  L  
Sbjct: 554 ASGKWREAEMVRKAMLDQGVKKVPGSSWIEIRNEVTSFVSGNNAYPYMADISKILYFLEL 613

Query: 730 QIRNT 734
           ++R+T
Sbjct: 614 EMRHT 618



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 109/438 (24%), Positives = 212/438 (48%), Gaps = 67/438 (15%)

Query: 53  ISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDL 108
           I A A++G+++DARKLF+++P ++ V+WN+M+  Y H    +++  LF  M     +PD 
Sbjct: 12  IVALARSGQISDARKLFDEIPHKDSVAWNAMLTAYSHVGLYQQSLSLFGCMRISHSKPDN 71

Query: 109 FSW-ALMITC------YTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKK 161
           FS+ A++  C      Y R G    A  +     +    A  N+++  Y K    ++A+K
Sbjct: 72  FSFSAVLNACACAGASYVRFGATLHALVVVSGYLSSLPVA--NSLIDMYGKCLLPDDARK 129

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA 221
           + D     N V+W S++  Y  +  + +A + F +M ER V++WN+M+ G+    ++++ 
Sbjct: 130 VFDETSDSNEVTWCSLMFAYANSCRLGVALELFRSMPERVVIAWNIMIVGHARRGEVEAC 189

Query: 222 WKFFQKI------PEQNVVSWV---------------------------------TMLSG 242
              F+++      P+Q   S +                                 +MLS 
Sbjct: 190 LHLFKEMCGSLCQPDQWTFSALINACAVSMEMLYGCMVHGFVIKSGWSSAMEVKNSMLSF 249

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMI 302
           YA+     +A ++F+     N V+WNA+I A+++ G  ++A   F + PERN VSWT+MI
Sbjct: 250 YAKLECQDDAMKVFNSFGCFNQVSWNAIIDAHMKLGDTQKAFLAFQKAPERNIVSWTSMI 309

Query: 303 DGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV---- 358
            GY R    + A  +   +  +N      +++G V +     A  +  ++  H  +    
Sbjct: 310 AGYTRNGNGELALSMFLDLT-RNSVQLDDLVAGAVLHACASLAILVHGRM-VHGCIIRHG 367

Query: 359 ------CWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFE 412
                   N ++  YA+CG +  +   F  +++KD+++WN+M+  +    + ++A+ ++ 
Sbjct: 368 LDKYLYVGNSLVNMYAKCGDIKGSRLAFHDILDKDLISWNSMLFAFGLHGRANEAICLYR 427

Query: 413 EM---GKRRNTVSWNALI 427
           EM   G + + V++  L+
Sbjct: 428 EMVASGVKPDEVTFTGLL 445



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 121/486 (24%), Positives = 205/486 (42%), Gaps = 108/486 (22%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           SY+F    KI  L +SG++ +A K+F ++  K++V +N+M++AY+  G    +  LF  M
Sbjct: 3   SYLFRTTPKIVALARSGQISDARKLFDEIPHKDSVAWNAMLTAYSHVGLYQQSLSLFGCM 62

Query: 73  ----PQRNLVSWNS-----------------------MIAGYLHNDKV------------ 93
                + +  S+++                       +++GYL +  V            
Sbjct: 63  RISHSKPDNFSFSAVLNACACAGASYVRFGATLHALVVVSGYLSSLPVANSLIDMYGKCL 122

Query: 94  --KEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYA 151
              +AR++FD+    +  +W  ++  Y     L  A ELF  +P +   A WN M+ G+A
Sbjct: 123 LPDDARKVFDETSDSNEVTWCSLMFAYANSCRLGVALELFRSMPERVVIA-WNIMIVGHA 181

Query: 152 KIGNYNEAKKLLDAM------PSKNIVS--------------------------W----- 174
           + G       L   M      P +   S                          W     
Sbjct: 182 RRGEVEACLHLFKEMCGSLCQPDQWTFSALINACAVSMEMLYGCMVHGFVIKSGWSSAME 241

Query: 175 --NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQN 232
             NSMLS Y K      A K F +    + VSWN ++D +++L D   A+  FQK PE+N
Sbjct: 242 VKNSMLSFYAKLECQDDAMKVFNSFGCFNQVSWNAIIDAHMKLGDTQKAFLAFQKAPERN 301

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE 292
           +VSW +M++GY RNG    A  +F  +  RN V  + ++A  V    +   A L I +  
Sbjct: 302 IVSWTSMIAGYTRNGNGELALSMFLDLT-RNSVQLDDLVAGAV----LHACASLAILVHG 356

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
           R       M+ G +        R  LD+  Y       ++++ Y +   +  +   F  I
Sbjct: 357 R-------MVHGCI-------IRHGLDKYLY----VGNSLVNMYAKCGDIKGSRLAFHDI 398

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAV 408
              D++ WN M+  +   GR +EAI L+R+M    V  D VT+  ++   + +  + +  
Sbjct: 399 LDKDLISWNSMLFAFGLHGRANEAICLYREMVASGVKPDEVTFTGLLMTCSHLGLISEGF 458

Query: 409 KIFEEM 414
             F+ M
Sbjct: 459 AFFQSM 464



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 141/318 (44%), Gaps = 32/318 (10%)

Query: 32  EEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHND 91
           ++A+K+F+     N V++N++I A+ K G    A   F++ P+RN+VSW SMIAGY  N 
Sbjct: 257 DDAMKVFNSFGCFNQVSWNAIIDAHMKLGDTQKAFLAFQKAPERNIVSWTSMIAGYTRNG 316

Query: 92  KVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACW--N 144
             + A  +F  + R      DL + A++  C +    +        ++ +  D   +  N
Sbjct: 317 NGELALSMFLDLTRNSVQLDDLVAGAVLHACASLAILVHGRMVHGCIIRHGLDKYLYVGN 376

Query: 145 AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EER 200
           ++V  YAK G+   ++     +  K+++SWNSML  +  +G  + A   +  M     + 
Sbjct: 377 SLVNMYAKCGDIKGSRLAFHDILDKDLISWNSMLFAFGLHGRANEAICLYREMVASGVKP 436

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ--------NVVSWVTMLSGYARNGRMLEA 252
           D V++  +L     L  +   + FFQ +  +        +V   V ML    R G + EA
Sbjct: 437 DEVTFTGLLMTCSHLGLISEGFAFFQSMCLEFGLSHGMDHVACMVDML---GRGGYVAEA 493

Query: 253 RRL---FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP---VSWTTMIDGYV 306
           R L   + +  I    +   ++ A    G +   + +   +    P   V +  + + Y 
Sbjct: 494 RSLAEKYSKTSITRTNSCEVLLGACYAHGDLGTGSSVGEYLKNLEPEKEVGYVLLSNLYC 553

Query: 307 RIAKLDEA----RRLLDQ 320
              K  EA    + +LDQ
Sbjct: 554 ASGKWREAEMVRKAMLDQ 571



 Score = 41.2 bits (95), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 9/126 (7%)

Query: 14  YVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP 73
           Y++  N  +    K G ++ +   F  +  K+ +++NSM+ A+  +GR N+A  L+ +M 
Sbjct: 371 YLYVGNSLVNMYAKCGDIKGSRLAFHDILDKDLISWNSMLFAFGLHGRANEAICLYREMV 430

Query: 74  QRNL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGEL 124
              +    V++  ++    H   + E    F  M         +   A M+    R G +
Sbjct: 431 ASGVKPDEVTFTGLLMTCSHLGLISEGFAFFQSMCLEFGLSHGMDHVACMVDMLGRGGYV 490

Query: 125 EKAREL 130
            +AR L
Sbjct: 491 AEARSL 496


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 249/822 (30%), Positives = 381/822 (46%), Gaps = 143/822 (17%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGY--------------------LH 89
           N++IS Y+K G +  AR++F++MP R+LVSWNS++A Y                    L 
Sbjct: 78  NNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLLFRILR 137

Query: 90  NDKVKEARELFDKMFRPDLFS---WA---------------------LMITCYTRKGELE 125
            D V  +R     M +  L S   WA                      ++  Y + G+++
Sbjct: 138 QDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVK 197

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN--------------- 170
           + + LF+ +P + D   WN M+  Y ++G   EA  L  A  S                 
Sbjct: 198 EGKVLFEEMPYR-DVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARIS 256

Query: 171 -----------------------IVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----V 203
                                  I+  N  LS Y  +G+     K F  M E DV    V
Sbjct: 257 GDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQV 316

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT----MLSGYARNGRMLEARRLFDQM 259
           ++ LML   V++D L    +      +  +   +T    +++ Y +  +   AR +FD M
Sbjct: 317 TFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNM 376

Query: 260 PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE--RNPVSWTTMIDGYVRIAKLDEARRL 317
             R++++WN++IA   Q G   EA  LF+++      P  +T M       + L E   L
Sbjct: 377 SERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYT-MTSVLKAASSLPEGLSL 435

Query: 318 LDQMPYKNIA--------AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ 369
             Q+    I           TA+I  Y +N+ M EA  +F++    D+V WN M+ GY Q
Sbjct: 436 SKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQ 494

Query: 370 CGRMDEAINLFRQM------------------------VNK-------------DIVTW- 391
                + + LF  M                        +N+             D+  W 
Sbjct: 495 SHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWV 554

Query: 392 -NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
            + ++  Y +   M  A   F+ +    + V+W  +ISG ++N     A  +F  M   G
Sbjct: 555 SSGILDMYVKCGDMSAAQFAFDSI-PVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMG 613

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
              D  T+A    A + L AL+ GRQIH  A+K    ND FVG SL+ MYAKCG I +A 
Sbjct: 614 VLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAY 673

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
            LFK  + +++ +WN+++ G A +G   E ++LF++M   G+ PD VTFIGVLSACSH G
Sbjct: 674 CLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSG 733

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
           LV    K    M   Y I+P +EHY+C+ D L RAG + +A  +++ M ++ +A ++ TL
Sbjct: 734 LVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTL 793

Query: 631 LGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQ 690
           L ACR+  + + G+    KL ELEP  +S Y LLSNM+A A +WDE++  R  M+G   +
Sbjct: 794 LAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVK 853

Query: 691 KQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           K PG SWIEVKN+IH F+  D    +T  I   +K +   I+
Sbjct: 854 KDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIK 895



 Score = 55.1 bits (131), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
           L LG+  H   +      + F+ N+LI+MY+KCG +  A  +F      D++SWNS++A 
Sbjct: 55  LMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAA 114

Query: 531 YA-----INGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
           YA     +  N  +A  LF  +  + V    +T   +L  C H G V
Sbjct: 115 YAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV 161



 Score = 45.8 bits (107), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 36/184 (19%), Positives = 84/184 (45%), Gaps = 15/184 (8%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL---- 77
           +    K G +++A  +F ++   N   +N+M+   A++G   +  +LF+QM    +    
Sbjct: 660 VDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDK 719

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFD 132
           V++  +++   H+  V EA +    M      +P++  ++ +     R G +++A  L +
Sbjct: 720 VTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIE 779

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNEAKKL------LDAMPSKNIVSWNSMLSGYTKNGE 186
            +  +   + +  ++A     G+    K++      L+ + S   V  ++M +  +K  E
Sbjct: 780 SMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDE 839

Query: 187 MHLA 190
           M LA
Sbjct: 840 MKLA 843


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 199/642 (30%), Positives = 325/642 (50%), Gaps = 117/642 (18%)

Query: 181 YTKNG---EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI------PEQ 231
           Y ++G   ++  A K FE M ER++ +WN M+  Y  +DD   AW  F ++      P+ 
Sbjct: 116 YARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDN 175

Query: 232 NVVSWVTMLSGYARN---GRMLEAR------------------------------RLFDQ 258
              +    + G  R+   G+ + ++                              ++FD+
Sbjct: 176 FTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDE 235

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER------NPVSWTTMIDGYVRIAKLD 312
           M  RN V WN++I+A  Q G   +A  LF+ M E       +  ++TT++         +
Sbjct: 236 MGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDN 295

Query: 313 EARR----LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
           + R+    L+     KNI  +T ++  Y +  R++ A +IF+++   +   WN MI+GY 
Sbjct: 296 QGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQ 355

Query: 369 QCGRMDEAINLFRQM----VNKDIVTWNTMIAG--------------------------- 397
           Q G   EA+ LF+QM    +  D  + ++M++                            
Sbjct: 356 QNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGI 415

Query: 398 --------YAQIRQMDDAVKIFEE-MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
                   YA+   MD A K++++ + K RNT  WN++++G+       ++   F+ M +
Sbjct: 416 LQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLE 475

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
              + D  T+                            VN L +  +L+ MY+KCG I  
Sbjct: 476 SDIEYDVLTMVTI-------------------------VNLLVLETALVDMYSKCGAITK 510

Query: 509 AELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
           A  +F + +  +++SWN++I+GY+ +G + EA+ L+EEM  +G+ P+ VTF+ +LSACSH
Sbjct: 511 ARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSH 570

Query: 569 VGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWG 628
            GLV+ GL++F  M E Y IE   EHY CM+DLL RAGRL++A E V+ M I+P    WG
Sbjct: 571 TGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWG 630

Query: 629 TLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688
            LLGACR+H+++ +GR+A ++L EL+PQ    Y ++SN++A AGRW EVE +R  M+  G
Sbjct: 631 ALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKG 690

Query: 689 AQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQ 730
            +K PG SWIE+ ++I  F +G     +T EI N L+ L  Q
Sbjct: 691 VKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQ 732



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 146/567 (25%), Positives = 267/567 (47%), Gaps = 68/567 (11%)

Query: 56  YAKNGRVND---ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDL 108
           YA++G ++D   ARKLFE+MP+RNL +WN+MI  Y   D   EA  +FD+M +    PD 
Sbjct: 116 YARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDN 175

Query: 109 FSWALMI-TC---YTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLD 164
           F++A  +  C    +R G  +   +L      K DT   NA++  YAK  +     K+ D
Sbjct: 176 FTFASALRVCGALRSRDGGKQVHSKLI-ACGFKGDTFVGNALIDMYAKCDDEESCLKVFD 234

Query: 165 AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER------DVVSWNLMLDGYVELDDL 218
            M  +N V+WNS++S   + G  + A   F  M+E       D  ++  +L       + 
Sbjct: 235 EMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRND 294

Query: 219 DSAWKFFQKIPE----QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
           +   +    +      +N++    ++  Y+  GR+  A+ +F++M  RN  +WN+MI  Y
Sbjct: 295 NQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGY 354

Query: 275 VQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA-- 328
            Q G+ +EA RLF +M     + +  S ++M+   V ++   + R L + +    +    
Sbjct: 355 QQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEG 414

Query: 329 --QTAMISGYVQNKRMDEANQIFDKIGTHD--VVCWNVMIKGYAQCGRMDEAINLFRQMV 384
             Q  ++  Y +   MD A +++D+    D     WN ++ GYA  G   E+ N F +M+
Sbjct: 415 ILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEML 474

Query: 385 NKDI--------------VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
             DI              V    ++  Y++   +  A  +F+ M   +N VSWNA+ISG+
Sbjct: 475 ESDIEYDVLTMVTIVNLLVLETALVDMYSKCGAITKARTVFDNMNG-KNIVSWNAMISGY 533

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI-------HHLAIK 483
            ++    +AL ++  M ++G   +  T    LSAC+H   ++ G +I       +++  K
Sbjct: 534 SKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAK 593

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNA-ELLFKDADPVDVISWNSLIAGYAINGNAT---- 538
           + +         ++ +  + GR+++A E + K     +V +W +L+    ++ +      
Sbjct: 594 AEHY------TCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRL 647

Query: 539 EAIKLFEEMVMEGVAPDPVTFIGVLSA 565
            A +LFE   ++   P P   +  + A
Sbjct: 648 AAQRLFE---LDPQNPGPYVIMSNIYA 671



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 114/391 (29%), Positives = 193/391 (49%), Gaps = 45/391 (11%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
           KN +    ++  Y++ GR+N A+++F +M +RN  SWNSMI GY  N + +EA  LF +M
Sbjct: 311 KNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQM 370

Query: 104 ----FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNY 156
                +PD FS + M++      + +K REL + +     +E+      +V  YAK G+ 
Sbjct: 371 QLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSM 430

Query: 157 NEAKKLLDAMPSK--NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV------------ 202
           + A K+ D    K  N   WNS+L+GY   G    +   F  M E D+            
Sbjct: 431 DYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVN 490

Query: 203 --VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
             V    ++D Y +   +  A   F  +  +N+VSW  M+SGY+++G   EA  L+++MP
Sbjct: 491 LLVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMP 550

Query: 261 IR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVRIAKL 311
            +    N V + A+++A    G +EE  R+F  M E   +      +T M+D   R  +L
Sbjct: 551 KKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRL 610

Query: 312 DEARRLLDQMPYK-NIAAQTAMISGYVQNKRMD----EANQIFDKIGTHDVVCWNVMIKG 366
           ++A+  +++MP +  ++   A++     +K MD     A ++F+ +   +   + +M   
Sbjct: 611 EDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFE-LDPQNPGPYVIMSNI 669

Query: 367 YAQCGRMDEAINLFRQM-----VNKDI-VTW 391
           YA  GR  E  ++ RQM     V KD  V+W
Sbjct: 670 YAAAGRWKEVEDI-RQMMKMKGVKKDPGVSW 699



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 117/463 (25%), Positives = 205/463 (44%), Gaps = 62/463 (13%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
           + + L + G KG   F  N  I    K    E  +K+F +M ++N VT+NS+ISA A+ G
Sbjct: 197 VHSKLIACGFKGD-TFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFG 255

Query: 61  RVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTR 120
             NDA  LF +M +                          +   +PD F++  ++T    
Sbjct: 256 HFNDALVLFLRMQES-------------------------EDGIQPDQFTFTTLLTLCAN 290

Query: 121 KGELEKARELFDLLPNKEDTA---CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSM 177
           +    + R++   L     T        +V  Y++ G  N AK++ + M  +N  SWNSM
Sbjct: 291 QRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSM 350

Query: 178 LSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP---- 229
           + GY +NGE   A + F+ M+    + D  S + ML   V L D     +    I     
Sbjct: 351 IEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTM 410

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQM--PIRNVVAWNAMIAAYVQRGQIEEAARLF 287
           E+  +  V ++  YA+ G M  A +++DQ     RN   WN+++A Y  +G  +E+   F
Sbjct: 411 EEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHF 470

Query: 288 IEMPERNP--------------VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMI 333
           +EM E +               V  T ++D Y +   + +AR + D M  KNI +  AMI
Sbjct: 471 LEMLESDIEYDVLTMVTIVNLLVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMI 530

Query: 334 SGYVQNKRMDEANQIFDKIGTHDV----VCWNVMIKGYAQCGRMDEAINLFRQM-----V 384
           SGY ++    EA  +++++    +    V +  ++   +  G ++E + +F  M     +
Sbjct: 531 SGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNI 590

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
                 +  M+    +  +++DA +  E+M       +W AL+
Sbjct: 591 EAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALL 633



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 141/604 (23%), Positives = 267/604 (44%), Gaps = 59/604 (9%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKV 93
           A K+F +M ++N   +N+MI AYA+     +A  +F++M +  +   N   A  L     
Sbjct: 128 ARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGA 187

Query: 94  KEARE--------LFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNA 145
             +R+        L    F+ D F    +I  Y +  + E   ++FD +  + +   WN+
Sbjct: 188 LRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEM-GERNQVTWNS 246

Query: 146 MVAGYAKIGNYNEAKKLLDAM--------PSKNIVSWNSMLSGYTKNGEM--HLASKFFE 195
           +++  A+ G++N+A  L   M        P +   +    L    +N      + +    
Sbjct: 247 IISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIR 306

Query: 196 AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRL 255
           A   ++++    ++  Y E   L+ A + F ++ E+N  SW +M+ GY +NG   EA RL
Sbjct: 307 ANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRL 366

Query: 256 FDQMPIRNV----VAWNAMIAAYVQRGQIEEAARL--FI--EMPERNPVSWTTMIDGYVR 307
           F QM +  +     + ++M+++ V     ++   L  FI     E   +    ++D Y +
Sbjct: 367 FKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAK 426

Query: 308 IAKLDEARRLLDQMPYK--NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV-------- 357
              +D A ++ DQ   K  N A   ++++GY       E+   F ++   D+        
Sbjct: 427 CGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMV 486

Query: 358 ------VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIF 411
                 V    ++  Y++CG + +A  +F  M  K+IV+WN MI+GY++     +A+ ++
Sbjct: 487 TIVNLLVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILY 546

Query: 412 EEMGKR---RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK---KADHSTLACALSAC 465
           EEM K+    N V++ A++S         + L+IF  M ++     KA+H T  C +   
Sbjct: 547 EEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYT--CMVDLL 604

Query: 466 AHLAALQLGRQ-IHHLAIKSGYVN-DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
                L+  ++ +  + I+         +G   +      GR+  A+ LF + DP +   
Sbjct: 605 GRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLA-AQRLF-ELDPQNPGP 662

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP-VTFIGVLSACSHVGLVDGGLKLFECM 582
           +  +   YA  G   E   + + M M+GV  DP V++I +    S + +   G K     
Sbjct: 663 YVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEI---NSEIQIFHAGSKTHPKT 719

Query: 583 TEVY 586
            E+Y
Sbjct: 720 EEIY 723


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 214/687 (31%), Positives = 352/687 (51%), Gaps = 70/687 (10%)

Query: 93  VKEARELFDKMFRPDLFSWAL-----MITCYTRKGELEKARELFDLLPNKEDTACWNAMV 147
           ++  R L  ++ R DL          ++T Y+R G +  AR +FD +    D   W AM 
Sbjct: 64  LRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMA 123

Query: 148 AGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL 207
           +  A+ G   E+  L+  M    ++      + YT     H  + F   +          
Sbjct: 124 SCLARNGAERESLLLIGEMLESGLLP-----NAYTLCAVAH--ACFPHEL---------- 166

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
               Y  +  +         +   ++     ++   ARNG +  AR++FD +  + VV W
Sbjct: 167 ----YCLVGGVVLGLVHKMGLWGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVW 222

Query: 268 NAMIAAYVQRGQIEEAARLFIEM------PERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
             +I+ YVQ    EEA  +F++       P+R  +S  +MI     +  +    +L    
Sbjct: 223 TLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMS--SMISACTELGSVRLGLQLHSLA 280

Query: 322 PYKNIAAQTAMISGYVQ-------NKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG-RM 373
                A+   +  G V         + MD AN++F+++  +DV+ W  +I GY Q G + 
Sbjct: 281 LRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQE 340

Query: 374 DEAINLFRQMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW---NAL 426
           ++ + LF +M+N+ I    +T+++++   A I   D   ++   + K     +    NAL
Sbjct: 341 NKVMVLFGEMLNESIKPNHITYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNAL 400

Query: 427 ISGFLQNEFHLDALKIF--------VLMTQEGKKA--DH-----------STLACALSAC 465
           +S + ++    +A ++F        +    EG+ A  DH           ST A  +SA 
Sbjct: 401 VSMYAESGCMEEARRVFNQLYERSMISCITEGRDAPLDHRIGRMDMGISSSTFASLISAA 460

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
           A +  L  G+Q+H + +K+G+ +D FV NSL++MY++CG +++A   F +    +VISW 
Sbjct: 461 ASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWT 520

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
           S+I+G A +G A  A+ LF +M++ GV P+ VT+I VLSACSHVGLV  G + F  M   
Sbjct: 521 SMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRD 580

Query: 586 YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI 645
           + + P +EHYACM+DLL+R+G + EA E +  M +K +A +W TLLGACR H NI++G I
Sbjct: 581 HGLIPRMEHYACMVDLLARSGLVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEI 640

Query: 646 AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705
           A + + ELEP+  + Y LLSN++A+AG WDEV ++R +M  +   K+ G SW+EV+N  H
Sbjct: 641 AAKNVIELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTH 700

Query: 706 TFLSGDPKQCRTAEICNTLKTLAAQIR 732
            F +GD    R  +I   L TL  +I+
Sbjct: 701 EFRAGDTSHPRAQDIYGKLDTLVGEIK 727



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 134/595 (22%), Positives = 266/595 (44%), Gaps = 71/595 (11%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMPQ-RNLVSWNSMIAGYLHNDKVKEARELFDK 102
           ++ V  NS+++ Y++ G V  AR +F+ M   R++VSW +M +    N   +E+  L  +
Sbjct: 82  RDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERESLLLIGE 141

Query: 103 MFRPDLFSWALMI-----TCYTRKGELEKARELFDLLPN----KEDTACWNAMVAGYAKI 153
           M    L   A  +      C+  +        +  L+        D A  +A++   A+ 
Sbjct: 142 MLESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGLWGTDIAVGSALIDMLARN 201

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE-----MHLASKFFEAMEERDVVSWNLM 208
           G+   A+K+ D +  K +V W  ++S Y + GE     + +   F E   E D  + + M
Sbjct: 202 GDLASARKVFDGLIEKTVVVWTLLISRYVQ-GECAEEAVEIFLDFLEDGFEPDRYTMSSM 260

Query: 209 LDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG----YARNG---RMLEARRLFDQMPI 261
           +    EL  +    +           S   +  G    YA++     M  A ++F++M  
Sbjct: 261 ISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRK 320

Query: 262 RNVVAWNAMIAAYVQRG-QIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARR 316
            +V++W A+I+ YVQ G Q  +   LF EM       N +++++++     I+  D  R+
Sbjct: 321 NDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACANISDHDSGRQ 380

Query: 317 LLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY----- 367
           +   +   N AA      A++S Y ++  M+EA ++F+++    ++  + + +G      
Sbjct: 381 VHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSMI--SCITEGRDAPLD 438

Query: 368 AQCGRMDEAI--NLFRQMVN------------------------KDIVTWNTMIAGYAQI 401
            + GRMD  I  + F  +++                         D    N++++ Y++ 
Sbjct: 439 HRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRC 498

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
             ++DA + F E+ K RN +SW ++ISG  ++ +   AL +F  M   G K +  T    
Sbjct: 499 GYLEDACRSFNEL-KDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAV 557

Query: 462 LSACAHLAALQLGRQ-IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV- 519
           LSAC+H+  ++ G++    +    G +  +     ++ + A+ G ++ A L F +  P+ 
Sbjct: 558 LSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEA-LEFINEMPLK 616

Query: 520 -DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVD 573
            D + W +L+     + N  E  ++  + V+E    DP  ++ + +  +  GL D
Sbjct: 617 ADALVWKTLLGACRSHDN-IEVGEIAAKNVIELEPRDPAPYVLLSNLYADAGLWD 670



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/393 (20%), Positives = 172/393 (43%), Gaps = 59/393 (15%)

Query: 52  MISAYAKNG---RVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEAR------ELFDK 102
           ++  YAK+     ++ A K+FE+M + +++SW ++I+GY+ +  V+E +      E+ ++
Sbjct: 295 LVDMYAKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQS-GVQENKVMVLFGEMLNE 353

Query: 103 MFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACW---NAMVAGYAKIGNYNEA 159
             +P+  +++ ++       + +  R++   +      A     NA+V+ YA+ G   EA
Sbjct: 354 SIKPNHITYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEA 413

Query: 160 KKLLDAMPSKNIVS-------------------------WNSMLSG------YTKNGEMH 188
           +++ + +  ++++S                         + S++S        TK  ++H
Sbjct: 414 RRVFNQLYERSMISCITEGRDAPLDHRIGRMDMGISSSTFASLISAAASVGMLTKGQQLH 473

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGR 248
             +   +A    D    N ++  Y     L+ A + F ++ ++NV+SW +M+SG A++G 
Sbjct: 474 AMT--LKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGY 531

Query: 249 MLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-----SWT 299
              A  LF  M +  V    V + A+++A    G + E    F  M   + +      + 
Sbjct: 532 AERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYA 591

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK----IGTH 355
            M+D   R   + EA   +++MP K  A     + G  ++    E  +I  K    +   
Sbjct: 592 CMVDLLARSGLVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEIAAKNVIELEPR 651

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
           D   + ++   YA  G  DE   +   M + ++
Sbjct: 652 DPAPYVLLSNLYADAGLWDEVARIRSAMRDNNL 684



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 9/147 (6%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS  F  N  ++   + G +E+A + F+++  +N +++ SMIS  AK+G    A  LF  
Sbjct: 482 GSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHD 541

Query: 72  M----PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKG 122
           M     + N V++ ++++   H   V+E +E F  M R     P +  +A M+    R G
Sbjct: 542 MILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSG 601

Query: 123 ELEKARELFDLLPNKEDTACWNAMVAG 149
            +++A E  + +P K D   W  ++  
Sbjct: 602 LVKEALEFINEMPLKADALVWKTLLGA 628



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 99/208 (47%), Gaps = 23/208 (11%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----R 105
           NS++S Y++ G + DA + F ++  RN++SW SMI+G   +   + A  LF  M     +
Sbjct: 489 NSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVK 548

Query: 106 PDLFSWALMITCYTRKGELEKARELF-------DLLPNKEDTACWNAMVAGYAKIGNYNE 158
           P+  ++  +++  +  G + + +E F        L+P  E  AC   MV   A+ G   E
Sbjct: 549 PNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYAC---MVDLLARSGLVKE 605

Query: 159 AKKLLDAMPSK-NIVSWNSMLSGYTKNGEM---HLASKFFEAMEERDVVSWNLMLDGYVE 214
           A + ++ MP K + + W ++L     +  +    +A+K    +E RD   + L+ + Y +
Sbjct: 606 ALEFINEMPLKADALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNLYAD 665

Query: 215 LDDLDSAWKFFQKIPEQNV-----VSWV 237
               D   +    + + N+     +SW+
Sbjct: 666 AGLWDEVARIRSAMRDNNLNKETGLSWM 693


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 207/668 (30%), Positives = 347/668 (51%), Gaps = 66/668 (9%)

Query: 128 RELFDLLPNKEDTACWN------AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
           +EL  ++P       +N       +V+ ++K G+ NEA ++ + +  K    +++ML GY
Sbjct: 63  KELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGY 122

Query: 182 TKNGEMHLASKFFEAMEERDV--VSWNLMLDGYVELDDLDSAWKFFQKIPEQ-------- 231
            KN  +  A  F   M   DV  V +N      V  D+ D   K  ++I  Q        
Sbjct: 123 AKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNAD--LKRGKEIHGQLITNSFAA 180

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
           NV +   +++ YA+  ++ +A ++FD+MP R++V+WN +IA + Q G  ++A  L + M 
Sbjct: 181 NVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQ 240

Query: 292 ER----NPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMD 343
           +     + ++  T++     +  L   + +    +     K +   TA+   Y +   ++
Sbjct: 241 DEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVE 300

Query: 344 EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----------------- 386
            A  IFD +    VV WN M+ GY Q G  ++AI +F +M+ +                 
Sbjct: 301 TARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACA 360

Query: 387 ----------------------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
                                 DI   N++I+ Y++ +++D A  IF  +  R + VSWN
Sbjct: 361 DLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTH-VSWN 419

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
           A+I G+ QN    +AL  F  M   G K D  T+   + A A L+  +  + IH L I+S
Sbjct: 420 AMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRS 479

Query: 485 GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLF 544
               ++FV  +L+ MY+KCG I  A  LF       VI+WN++I GY  +G    A+ LF
Sbjct: 480 CLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLF 539

Query: 545 EEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSR 604
           ++M    V P+ +T++ V+SACSH GLVD GL+ F+ M + Y +EP ++HY  M+DLL R
Sbjct: 540 DKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGR 599

Query: 605 AGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALL 664
           AGR+ EA++ ++ M I P   ++G   GAC++H+NI++G  A +KL EL P +   + LL
Sbjct: 600 AGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLL 659

Query: 665 SNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTL 724
           +N++A   +W +V +VR +ME  G +K PGCS +E++N++H+F SG     ++  I   L
Sbjct: 660 ANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFL 719

Query: 725 KTLAAQIR 732
           + L  +I+
Sbjct: 720 EELVYEIK 727



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 120/399 (30%), Positives = 195/399 (48%), Gaps = 31/399 (7%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF---- 100
           N      +++ YAK  +++DA K+F++MP+R+LVSWN++IAG+  N   K+A EL     
Sbjct: 181 NVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQ 240

Query: 101 DKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWN---AMVAGYAKIGNYN 157
           D+  RPD  +   ++      G L   + +             N   A+   Y+K G+  
Sbjct: 241 DEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVE 300

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER--DVVSWNLM--LDGYV 213
            A+ + D M  K +VSWNSM+ GY +NGE   A   FE M E   D     +M  L    
Sbjct: 301 TARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACA 360

Query: 214 ELDDLDSAWKFFQKIPEQ-----NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN 268
           +L DL+   KF  K  +Q     ++    +++S Y++  R+  A  +F+ +  R  V+WN
Sbjct: 361 DLGDLERG-KFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWN 419

Query: 269 AMIAAYVQRGQIEEAARLFIEMPE--RNPVSWTTMIDGYVRIAKLDEARR-------LLD 319
           AMI  Y Q G++ EA   F EM      P S+ TM+     +A+L   R        ++ 
Sbjct: 420 AMILGYAQNGRVSEALNCFSEMKSLGMKPDSF-TMVSVIPALAELSVTRHAKWIHGLIIR 478

Query: 320 QMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
               KNI   TA++  Y +   +  A ++FD I    V+ WN MI GY   G    A++L
Sbjct: 479 SCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDL 538

Query: 380 FRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           F +M    V  + +T+ ++I+  +    +D+ ++ F+ M
Sbjct: 539 FDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSM 577



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 152/357 (42%), Gaps = 62/357 (17%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K G VE A  IF  M QK  V++NSM+  Y +NG    A  +FE+M +  +      I  
Sbjct: 295 KCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIME 354

Query: 87  YLHN-------DKVKEARELFDKM-FRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
            LH        ++ K   +  D++    D+     +I+ Y++   ++ A ++F+ L N  
Sbjct: 355 ALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNL-NGR 413

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPS------------------------------ 168
               WNAM+ GYA+ G  +EA      M S                              
Sbjct: 414 THVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIH 473

Query: 169 ---------KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLD 219
                    KNI    +++  Y+K G +H+A K F+ + +R V++WN M+DGY       
Sbjct: 474 GLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGR 533

Query: 220 SAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-----NVVAWNAM 270
           +A   F K+     E N +++++++S  + +G + E  R F  M        ++  + AM
Sbjct: 534 AALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAM 593

Query: 271 IAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDE-----ARRLLDQMP 322
           +    + G+I+EA      MP    ++      G  +I K  E     A++L +  P
Sbjct: 594 VDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNP 650



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 126/273 (46%), Gaps = 23/273 (8%)

Query: 10  NKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLF 69
           N GS +   N  I+   K  RV+ A  IF+ ++ +  V++N+MI  YA+NGRV++A   F
Sbjct: 379 NLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCF 438

Query: 70  EQMPQRNL----VSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRK 121
            +M    +     +  S+I         + A+ +   + R     ++F    ++  Y++ 
Sbjct: 439 SEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKC 498

Query: 122 GELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP----SKNIVSWNSM 177
           G +  AR+LFD++ ++     WNAM+ GY   G    A  L D M       N +++ S+
Sbjct: 499 GAIHMARKLFDMISDRH-VITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSV 557

Query: 178 LSGYTKNGEMHLASKFFEAME-----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQN 232
           +S  + +G +    + F++M+     E  +  +  M+D       +  AW F + +P   
Sbjct: 558 ISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISP 617

Query: 233 VVSWVTMLSGYARNGRMLE-----ARRLFDQMP 260
            ++      G  +  + +E     A++LF+  P
Sbjct: 618 GITVYGAXXGACKIHKNIEVGEKAAKKLFELNP 650


>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 601

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 185/538 (34%), Positives = 292/538 (54%), Gaps = 46/538 (8%)

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN---- 294
           ++S ++   +ML A   F+Q+   NV  +N MI A+    Q  +A   F  M        
Sbjct: 58  LISAFSLCRQMLLATNAFNQVQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYAD 117

Query: 295 -----------------PVSWT------------------TMIDGYVRIAK--LDEARRL 317
                            PV  +                  ++ID Y +     +  A++L
Sbjct: 118 NFTFPFLLKVCTGNVWLPVIESVHAQIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKL 177

Query: 318 LDQM-PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
              M   +++ +  +MISG  +    +EA ++FD++   D + WN M+ GY + G+MD+A
Sbjct: 178 FVSMGARRDVVSWNSMISGLAKGGLYEEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDA 237

Query: 377 INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
             LF +M  +++V+W+TM+ GY +   M+ A  +F++M   +N VSW  ++SGF +    
Sbjct: 238 FKLFDEMPERNVVSWSTMVLGYCKAGDMEMARMLFDKM-PVKNLVSWTIIVSGFAEKGLA 296

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSL 496
            +A+ +F  M +   K D+ T+   L+ACA    L LG +IH     + +     + N+L
Sbjct: 297 REAISLFDQMEKACLKLDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNAL 356

Query: 497 ITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
           + MYAKCGR+  A  +F D    DV+SWN+++ G A++G+  +A++LF+ M  EG +P+ 
Sbjct: 357 VDMYAKCGRLNIAYDVFNDIKNKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNK 416

Query: 557 VTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVK 616
           VT IGVL AC+H GL+D G++ F  M   Y + P VEHY CM+DLL R GRL+EA  +++
Sbjct: 417 VTMIGVLCACTHAGLIDDGIRYFSTMERDYTLVPEVEHYGCMVDLLGRKGRLEEAIRLIR 476

Query: 617 GMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDE 676
            M + PNA IWGTLLGACRMH  ++L R  ++ L ELEP  +  +++LSN++A AG W+ 
Sbjct: 477 NMPMAPNAIIWGTLLGACRMHNAVELAREVLDHLVELEPTDSGNFSMLSNIYAAAGDWNC 536

Query: 677 VEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD---PKQCRTAEICNTLKTLAAQI 731
           V   R+ M   G +K  G S IEV N++H F   D   PK     ++ N L+    Q+
Sbjct: 537 VANTRLRMRSIGTKKPSGASSIEVNNEVHEFTVFDRSHPKSDNIYQVINGLRHELKQV 594



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 121/421 (28%), Positives = 214/421 (50%), Gaps = 26/421 (6%)

Query: 20  KKITQLGKSGRVEEAIKIFSQMSQKNT----VTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           +K++ L K   + +  ++ +Q+ + N          +ISA++   ++  A   F Q+   
Sbjct: 22  QKLSDLHKCTNLNQVKQLHAQILKSNLHVDLFVVPKLISAFSLCRQMLLATNAFNQVQYP 81

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRK---GELEKAR 128
           N+  +N+MI  + HN +  +A   F  M R     D F++  ++   T       +E   
Sbjct: 82  NVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVH 141

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGN--YNEAKKLLDAMPSK-NIVSWNSMLSGYTKNG 185
              +      D    N+++  Y+K G+   + AKKL  +M ++ ++VSWNSM+SG  K G
Sbjct: 142 AQIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGG 201

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR 245
               A K F+ M E+D +SWN MLDGYV++  +D A+K F ++PE+NVVSW TM+ GY +
Sbjct: 202 LYEEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEMPERNVVSWSTMVLGYCK 261

Query: 246 NGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTM 301
            G M  AR LFD+MP++N+V+W  +++ + ++G   EA  LF +M +     +  +  ++
Sbjct: 262 AGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSI 321

Query: 302 IDGYVRIAKLDEARRLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFDKIGTHDV 357
           +        L    ++   +   N    T    A++  Y +  R++ A  +F+ I   DV
Sbjct: 322 LAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFNDIKNKDV 381

Query: 358 VCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEE 413
           V WN M++G A  G   +A+ LF++M     + + VT   ++        +DD ++ F  
Sbjct: 382 VSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTMIGVLCACTHAGLIDDGIRYFST 441

Query: 414 M 414
           M
Sbjct: 442 M 442



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 171/324 (52%), Gaps = 17/324 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  I+ L K G  EEA K+F +M +K+ +++N+M+  Y K G+++DA KLF++MP+
Sbjct: 187 VVSWNSMISGLAKGGLYEEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEMPE 246

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN+VSW++M+ GY     ++ AR LFDKM   +L SW ++++ +  KG   +A  LFD +
Sbjct: 247 RNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQM 306

Query: 135 PN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSW----NSMLSGYTKNGEM 187
                K D     +++A  A+ G     +K+  ++ + N        N+++  Y K G +
Sbjct: 307 EKACLKLDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRL 366

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGY 243
           ++A   F  ++ +DVVSWN ML G         A + F+++ E+    N V+ + +L   
Sbjct: 367 NIAYDVFNDIKNKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTMIGVLCAC 426

Query: 244 ARNGRMLEARRLFDQMP-----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-ERNPVS 297
              G + +  R F  M      +  V  +  M+    ++G++EEA RL   MP   N + 
Sbjct: 427 THAGLIDDGIRYFSTMERDYTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRNMPMAPNAII 486

Query: 298 WTTMIDGYVRIAKLDEARRLLDQM 321
           W T++        ++ AR +LD +
Sbjct: 487 WGTLLGACRMHNAVELAREVLDHL 510



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 122/260 (46%), Gaps = 17/260 (6%)

Query: 369 QCGRMDEAINLFRQMVNK----DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
           +C  +++   L  Q++      D+     +I+ ++  RQM  A   F ++ +  N   +N
Sbjct: 29  KCTNLNQVKQLHAQILKSNLHVDLFVVPKLISAFSLCRQMLLATNAFNQV-QYPNVHLYN 87

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
            +I     N     A   F  M ++G  AD+ T    L  C     L +   +H    K 
Sbjct: 88  TMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQIEKF 147

Query: 485 GYVNDLFVGNSLITMYAKCGR--IQNAELLFKDADP-VDVISWNSLIAGYAINGNATEAI 541
           G+++D+FV NSLI  Y+KCG   I  A+ LF       DV+SWNS+I+G A  G   EA 
Sbjct: 148 GFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGGLYEEAR 207

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601
           K+F+EM  +    D +++  +L     VG +D   KLF+ M E   +      ++ M+  
Sbjct: 208 KVFDEMPEK----DGISWNTMLDGYVKVGKMDDAFKLFDEMPERNVVS-----WSTMVLG 258

Query: 602 LSRAGRLDEAFEMVKGMKIK 621
             +AG ++ A  +   M +K
Sbjct: 259 YCKAGDMEMARMLFDKMPVK 278


>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
 gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
          Length = 614

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 160/435 (36%), Positives = 265/435 (60%), Gaps = 4/435 (0%)

Query: 301 MIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW 360
           +ID Y +     +AR++ D+MP +++ +    ++  V+   +    ++FD++   D V W
Sbjct: 169 LIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSW 228

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
           N ++ GY + G ++ A  LF++M  +++V+W+TM++GY +   ++ A  IF++M   +N 
Sbjct: 229 NTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKM-PSKNL 287

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
           V+W  ++S   Q     +A K+F  M +   + D + +   L+ACA   +L LG++IH  
Sbjct: 288 VTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRY 347

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGNAT 538
             K        V N+LI M+ KCG +  A+ +F D + V  D +SWNS+I G+A++G+  
Sbjct: 348 VRKRNLGRSTHVCNALIDMFCKCGCVNRADYVF-DTETVQKDSVSWNSIIGGFAMHGHGD 406

Query: 539 EAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACM 598
           +A++LF +M  +G  PD VT I VLSAC+H+G VD G + F  M   Y I P +EHY CM
Sbjct: 407 KALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCM 466

Query: 599 IDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKT 658
           IDLL R G + EA +++K M  +PN  IWG+LL ACR+H+N++   IAV +LS+L+P   
Sbjct: 467 IDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNA 526

Query: 659 SCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTA 718
             YA+LSN++AEAG+W ++ K R+ M+G+G+QK  G SW+E+    H F  GD K   + 
Sbjct: 527 GNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSD 586

Query: 719 EICNTLKTLAAQIRN 733
           +I   +  L++ +++
Sbjct: 587 QISEMVDRLSSHVKH 601



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 106/336 (31%), Positives = 187/336 (55%), Gaps = 15/336 (4%)

Query: 94  KEARELFDKMFRPDLFSWALMITCYTRKG--ELEKARELFDLLPNKEDTACWNAMVAGYA 151
           ++A   F  M R D F+++ +I   +  G   +         L + EDT   NA++  Y+
Sbjct: 115 RDALAAFSAMPRRDSFTYSFLIKALSAAGVAPVRAVHSHVVKLGSVEDTFVGNALIDAYS 174

Query: 152 KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
           K G +++A+K+ D MP +++VSWN+ ++   + GE+    K F+ M E+D VSWN +LDG
Sbjct: 175 KNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDG 234

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
           Y +  ++++A++ FQ++PE+NVVSW TM+SGY + G +  AR +FD+MP +N+V W  M+
Sbjct: 235 YTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMV 294

Query: 272 AAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
           +A  Q+G ++EA +LF +M E     +  +  +++        L   +R+   +  +N+ 
Sbjct: 295 SACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLG 354

Query: 328 AQT----AMISGYVQNKRMDEANQIFD-KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
             T    A+I  + +   ++ A+ +FD +    D V WN +I G+A  G  D+A+ LF Q
Sbjct: 355 RSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQ 414

Query: 383 M----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           M     N D VT   +++    +  +D+  + F  M
Sbjct: 415 MKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNM 450



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 110/372 (29%), Positives = 186/372 (50%), Gaps = 47/372 (12%)

Query: 42  SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFD 101
           S ++T   N++I AY+KNG  +DARK+F++MP+R++VSWN+ +A  +   ++   R+LFD
Sbjct: 159 SVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFD 218

Query: 102 KMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKK 161
           +M   D  SW  ++  YT+ GE+E A ELF  +P + +   W+ MV+GY K G+   A+ 
Sbjct: 219 EMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPER-NVVSWSTMVSGYCKKGDLEMARV 277

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA 221
           + D MPSKN+V+W  M+S   + G +  A K F  M+E             VELD     
Sbjct: 278 IFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKE-----------ASVELD----- 321

Query: 222 WKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV----AWNAMIAAYVQR 277
                      V + V++L+  A +G +   +R+   +  RN+       NA+I  + + 
Sbjct: 322 -----------VAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKC 370

Query: 278 GQIEEAARLF-IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN----------- 325
           G +  A  +F  E  +++ VSW ++I G+      D+A  L  QM  +            
Sbjct: 371 GCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINV 430

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV- 384
           ++A T M  G+V   R   +N   D      +  +  MI    + G + EA++L + M  
Sbjct: 431 LSACTHM--GFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPW 488

Query: 385 NKDIVTWNTMIA 396
             + V W ++++
Sbjct: 489 EPNEVIWGSLLS 500



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 176/329 (53%), Gaps = 21/329 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            F  N  I    K+G   +A K+F +M +++ V++N+ ++A  + G +   RKLF++MP+
Sbjct: 163 TFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPE 222

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           ++ VSWN+++ GY    +V+ A ELF +M   ++ SW+ M++ Y +KG+LE AR +FD +
Sbjct: 223 KDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKM 282

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSMLSGYTKNGEMHLA 190
           P+K +   W  MV+  A+ G  +EA KL   M       ++ +  S+L+   ++G + L 
Sbjct: 283 PSK-NLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLG 341

Query: 191 SKFFEAMEERDVVS----WNLMLDGYVELDDLDSA-WKFFQKIPEQNVVSWVTMLSGYAR 245
            +    + +R++       N ++D + +   ++ A + F  +  +++ VSW +++ G+A 
Sbjct: 342 KRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAM 401

Query: 246 NGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERN----PV- 296
           +G   +A  LF QM  +    + V    +++A    G ++E  R F  M ER+    P  
Sbjct: 402 HGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNM-ERDYGIMPQI 460

Query: 297 -SWTTMIDGYVRIAKLDEARRLLDQMPYK 324
             +  MID   R   + EA  L+  MP++
Sbjct: 461 EHYGCMIDLLGRGGLIKEAVDLIKSMPWE 489



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 162/306 (52%), Gaps = 18/306 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  +  + + G +    K+F +M +K+TV++N+++  Y K G V  A +LF++MP+
Sbjct: 194 VVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPE 253

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN+VSW++M++GY     ++ AR +FDKM   +L +W +M++   +KG +++A +LF  +
Sbjct: 254 RNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQM 313

Query: 135 PNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS----WNSMLSGYTKNGEM 187
                  D A   +++A  A+ G+ +  K++   +  +N+       N+++  + K G +
Sbjct: 314 KEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCV 373

Query: 188 HLASKFFEAME-ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSG 242
           + A   F+    ++D VSWN ++ G+      D A + F ++ +Q    + V+ + +LS 
Sbjct: 374 NRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSA 433

Query: 243 YARNGRMLEARRLFDQMP-----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-ERNPV 296
               G + E RR F  M      +  +  +  MI    + G I+EA  L   MP E N V
Sbjct: 434 CTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEV 493

Query: 297 SWTTMI 302
            W +++
Sbjct: 494 IWGSLL 499


>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 491

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 160/436 (36%), Positives = 265/436 (60%), Gaps = 4/436 (0%)

Query: 301 MIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW 360
           +ID Y +     +AR++ D+MP +++ +    ++  V+   +    ++FD++   D V W
Sbjct: 46  LIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSW 105

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
           N ++ GY + G ++ A  LF++M  +++V+W+TM++GY +   ++ A  IF++M   +N 
Sbjct: 106 NTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKM-PSKNL 164

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
           V+W  ++S   Q     +A K+F  M +   + D + +   L+ACA   +L LG++IH  
Sbjct: 165 VTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRY 224

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGNAT 538
             K        V N+LI M+ KCG +  A+ +F D + V  D +SWNS+I G+A++G+  
Sbjct: 225 VRKRNLGRSTHVCNALIDMFCKCGCVNRADYVF-DTETVQKDSVSWNSIIGGFAMHGHGD 283

Query: 539 EAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACM 598
           +A++LF +M  +G  PD VT I VLSAC+H+G VD G + F  M   Y I P +EHY CM
Sbjct: 284 KALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCM 343

Query: 599 IDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKT 658
           IDLL R G + EA +++K M  +PN  IWG+LL ACR+H+N++   IAV +LS+L+P   
Sbjct: 344 IDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNA 403

Query: 659 SCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTA 718
             YA+LSN++AEAG+W ++ K R+ M+G+G+QK  G SW+E+    H F  GD K   + 
Sbjct: 404 GNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSD 463

Query: 719 EICNTLKTLAAQIRNT 734
           +I   +  L++ +++ 
Sbjct: 464 QISEMVDRLSSHVKHV 479



 Score =  194 bits (493), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 104/327 (31%), Positives = 183/327 (55%), Gaps = 15/327 (4%)

Query: 103 MFRPDLFSWALMITCYTRKG--ELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
           M R D F+++ +I   +  G   +         L + EDT   NA++  Y+K G +++A+
Sbjct: 1   MPRRDSFTYSFLIKALSAAGVAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDAR 60

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
           K+ D MP +++VSWN+ ++   + GE+    K F+ M E+D VSWN +LDGY +  ++++
Sbjct: 61  KVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEA 120

Query: 221 AWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQI 280
           A++ FQ++PE+NVVSW TM+SGY + G +  AR +FD+MP +N+V W  M++A  Q+G +
Sbjct: 121 AFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLV 180

Query: 281 EEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT----AM 332
           +EA +LF +M E     +  +  +++        L   +R+   +  +N+   T    A+
Sbjct: 181 DEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNAL 240

Query: 333 ISGYVQNKRMDEANQIFD-KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKD 387
           I  + +   ++ A+ +FD +    D V WN +I G+A  G  D+A+ LF QM     N D
Sbjct: 241 IDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPD 300

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            VT   +++    +  +D+  + F  M
Sbjct: 301 AVTMINVLSACTHMGFVDEGRRHFSNM 327



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 110/372 (29%), Positives = 186/372 (50%), Gaps = 47/372 (12%)

Query: 42  SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFD 101
           S ++T   N++I AY+KNG  +DARK+F++MP+R++VSWN+ +A  +   ++   R+LFD
Sbjct: 36  SVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFD 95

Query: 102 KMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKK 161
           +M   D  SW  ++  YT+ GE+E A ELF  +P + +   W+ MV+GY K G+   A+ 
Sbjct: 96  EMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPER-NVVSWSTMVSGYCKKGDLEMARV 154

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA 221
           + D MPSKN+V+W  M+S   + G +  A K F  M+E             VELD     
Sbjct: 155 IFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKE-----------ASVELD----- 198

Query: 222 WKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQR 277
                      V + V++L+  A +G +   +R+   +  RN+       NA+I  + + 
Sbjct: 199 -----------VAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKC 247

Query: 278 GQIEEAARLF-IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN----------- 325
           G +  A  +F  E  +++ VSW ++I G+      D+A  L  QM  +            
Sbjct: 248 GCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINV 307

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV- 384
           ++A T M  G+V   R   +N   D      +  +  MI    + G + EA++L + M  
Sbjct: 308 LSACTHM--GFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPW 365

Query: 385 NKDIVTWNTMIA 396
             + V W ++++
Sbjct: 366 EPNEVIWGSLLS 377



 Score =  142 bits (359), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 173/328 (52%), Gaps = 19/328 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            F  N  I    K+G   +A K+F +M +++ V++N+ ++A  + G +   RKLF++MP+
Sbjct: 40  TFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPE 99

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           ++ VSWN+++ GY    +V+ A ELF +M   ++ SW+ M++ Y +KG+LE AR +FD +
Sbjct: 100 KDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKM 159

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSMLSGYTKNGEMHLA 190
           P+K +   W  MV+  A+ G  +EA KL   M       ++ +  S+L+   ++G + L 
Sbjct: 160 PSK-NLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLG 218

Query: 191 SKFFEAMEERDVVS----WNLMLDGYVELDDLDSA-WKFFQKIPEQNVVSWVTMLSGYAR 245
            +    + +R++       N ++D + +   ++ A + F  +  +++ VSW +++ G+A 
Sbjct: 219 KRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAM 278

Query: 246 NGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV----- 296
           +G   +A  LF QM  +    + V    +++A    G ++E  R F  M     +     
Sbjct: 279 HGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIE 338

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYK 324
            +  MID   R   + EA  L+  MP++
Sbjct: 339 HYGCMIDLLGRGGLIKEAVDLIKSMPWE 366



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 169/331 (51%), Gaps = 28/331 (8%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  +  + + G +    K+F +M +K+TV++N+++  Y K G V  A +LF++MP+
Sbjct: 71  VVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPE 130

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN+VSW++M++GY     ++ AR +FDKM   +L +W +M++   +KG +++A +LF  +
Sbjct: 131 RNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQM 190

Query: 135 PNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS----WNSMLSGYTKNGEM 187
                  D A   +++A  A+ G+ +  K++   +  +N+       N+++  + K G +
Sbjct: 191 KEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCV 250

Query: 188 HLASKFFEAME-ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSG 242
           + A   F+    ++D VSWN ++ G+      D A + F ++ +Q    + V+ + +LS 
Sbjct: 251 NRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSA 310

Query: 243 YARNGRMLEARRLFDQMP-----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-ERNPV 296
               G + E RR F  M      +  +  +  MI    + G I+EA  L   MP E N V
Sbjct: 311 CTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEV 370

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
            W +++           A RL   + Y  IA
Sbjct: 371 IWGSLL----------SACRLHKNVEYAEIA 391



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 14/180 (7%)

Query: 455 HSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
           +S L  ALSA    A +   R +H   +K G V D FVGN+LI  Y+K G   +A  +F 
Sbjct: 9   YSFLIKALSA----AGVAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFD 64

Query: 515 DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574
           +    DV+SWN+ +A     G      KLF+EM  +    D V++  +L   +  G V+ 
Sbjct: 65  EMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEK----DTVSWNTILDGYTKAGEVEA 120

Query: 575 GLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGAC 634
             +LF+ M E   +      ++ M+    + G L+ A  +   M  K N   W  ++ AC
Sbjct: 121 AFELFQRMPERNVVS-----WSTMVSGYCKKGDLEMARVIFDKMPSK-NLVTWTIMVSAC 174



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 137/313 (43%), Gaps = 57/313 (18%)

Query: 383 MVNKDIVTWNTMI-----AGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHL 437
           M  +D  T++ +I     AG A +R +   V    ++G   +T   NALI  + +N    
Sbjct: 1   MPRRDSFTYSFLIKALSAAGVAPVRAVHSHVV---KLGSVEDTFVGNALIDAYSKNGGFS 57

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
           DA K+F  M +     D  +   A++A      L   R++     +     D    N+++
Sbjct: 58  DARKVFDEMPER----DVVSWNTAMAAMVREGELAGVRKLFDEMPE----KDTVSWNTIL 109

Query: 498 TMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
             Y K G ++ A  LF+     +V+SW+++++GY   G+   A  +F++M  + +    V
Sbjct: 110 DGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNL----V 165

Query: 558 TFIGVLSACSHVGLVDGGLKLFECMTE------VYAIEPLV------------------- 592
           T+  ++SAC+  GLVD   KLF  M E      V A+  ++                   
Sbjct: 166 TWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYV 225

Query: 593 -------EHYAC--MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLG 643
                    + C  +ID+  + G ++ A  +     ++ ++  W +++G   MH +   G
Sbjct: 226 RKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGH---G 282

Query: 644 RIAVEKLSELEPQ 656
             A+E  ++++ Q
Sbjct: 283 DKALELFAQMKQQ 295


>gi|145335647|ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|110741720|dbj|BAE98806.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190892|gb|AEE29013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 474

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 173/418 (41%), Positives = 258/418 (61%), Gaps = 3/418 (0%)

Query: 314 ARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRM 373
           A ++  +M  KN+   T+MI+GY+ NK +  A + FD     D+V WN MI GY + G M
Sbjct: 47  ANKVFCEMVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNM 106

Query: 374 DEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433
            EA +LF QM  +D+++WNT++ GYA I  M+   ++F++M   RN  SWN LI G+ QN
Sbjct: 107 LEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDM-PERNVFSWNGLIKGYAQN 165

Query: 434 EFHLDALKIFVLMTQEGKKA-DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN-DLF 491
               + L  F  M  EG    + +T+   LSACA L A   G+ +H      GY   D+ 
Sbjct: 166 GRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVN 225

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
           V N+LI MY KCG I+ A  +FK     D+ISWN++I G A +G+ TEA+ LF EM   G
Sbjct: 226 VKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSG 285

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
           ++PD VTF+GVL AC H+GLV+ GL  F  M   ++I P +EH  C++DLLSRAG L +A
Sbjct: 286 ISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQA 345

Query: 612 FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEA 671
            E +  M +K +A IW TLLGA ++++ + +G +A+E+L +LEP+  + + +LSN++ +A
Sbjct: 346 VEFINKMPVKADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYGDA 405

Query: 672 GRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAA 729
           GR+D+  +++V+M  +G +K+ G SWIE  + +  F S   K  RT E+   L+ L +
Sbjct: 406 GRFDDAARLKVAMRDTGFKKEAGVSWIETDDGLVKFYSSGEKHPRTEELQRILRELKS 463



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 130/456 (28%), Positives = 208/456 (45%), Gaps = 82/456 (17%)

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYA 244
           G +  A+K F  M E++VV W  M++GY+   DL SA ++F   PE+++V W TM+SGY 
Sbjct: 42  GVIASANKVFCEMVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYI 101

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDG 304
             G MLEAR LFDQMP R+V++WN ++  Y   G +E   R+F +MPERN  SW  +I G
Sbjct: 102 EMGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKG 161

Query: 305 YVRIAKLDEA----RRLLDQMP-YKNIAAQTAMISGYVQNKRMDEANQIF---DKIGTH- 355
           Y +  ++ E     +R++D+     N A  T ++S   +    D    +    + +G + 
Sbjct: 162 YAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNK 221

Query: 356 -DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            DV   N +I  Y +CG ++ A+ +F+ +  +D+++WNTMI G A      +A+ +F E 
Sbjct: 222 VDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHE- 280

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
                                          M   G   D  T    L AC H+  ++ G
Sbjct: 281 -------------------------------MKNSGISPDKVTFVGVLCACKHMGLVEDG 309

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
                      Y N +F   S++     CG +            VD++S     AG+   
Sbjct: 310 L---------AYFNSMFTDFSIMPEIEHCGCV------------VDLLSR----AGF--- 341

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VE 593
              T+A++   +M    V  D V +  +L A      VD G    E   E+  +EP    
Sbjct: 342 --LTQAVEFINKM---PVKADAVIWATLLGASKVYKKVDIGEVALE---ELIKLEPRNPA 393

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMK---IKPNAGI 626
           ++  + ++   AGR D+A  +   M+    K  AG+
Sbjct: 394 NFVMLSNIYGDAGRFDDAARLKVAMRDTGFKKEAGV 429



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 143/276 (51%), Gaps = 14/276 (5%)

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY 212
           +G    A K+   M  KN+V W SM++GY  N ++  A ++F+   ERD+V WN M+ GY
Sbjct: 41  MGVIASANKVFCEMVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGY 100

Query: 213 VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
           +E+ ++  A   F ++P ++V+SW T+L GYA  G M    R+FD MP RNV +WN +I 
Sbjct: 101 IEMGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIK 160

Query: 273 AYVQRGQIEEAARLFIEMPER-----NPVSWTTMIDGYVRIAKLDEAR---RLLDQMPYK 324
            Y Q G++ E    F  M +      N  + T ++    ++   D  +   +  + + Y 
Sbjct: 161 GYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYN 220

Query: 325 --NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
             ++  + A+I  Y +   ++ A ++F  I   D++ WN MI G A  G   EA+NLF +
Sbjct: 221 KVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHE 280

Query: 383 MVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEM 414
           M N  I    VT+  ++     +  ++D +  F  M
Sbjct: 281 MKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSM 316



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 117/430 (27%), Positives = 196/430 (45%), Gaps = 32/430 (7%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
            NQ      L   G +  A K+F +M +KN V + SMI+ Y  N  +  AR+ F+  P+R
Sbjct: 29  LNQMFLFGMLCLMGVIASANKVFCEMVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPER 88

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           ++V WN+MI+GY+    + EAR LFD+M   D+ SW  ++  Y   G++E    +FD +P
Sbjct: 89  DIVLWNTMISGYIEMGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMP 148

Query: 136 NKEDTACWNAMVAGYAKIGNYNEA----KKLLD-AMPSKNIVSWNSMLSGYTKNGEMHLA 190
            + +   WN ++ GYA+ G  +E     K+++D      N  +   +LS   K G     
Sbjct: 149 ER-NVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFG 207

Query: 191 S---KFFEAM--EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR 245
               K+ E +   + DV   N ++D Y +   ++ A + F+ I  ++++SW TM++G A 
Sbjct: 208 KWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAA 267

Query: 246 NGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIE-------MPERN 294
           +G   EA  LF +M    +    V +  ++ A    G +E+    F         MPE  
Sbjct: 268 HGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIE 327

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ-NKRMDEANQIFD--- 350
                 ++D   R   L +A   +++MP K  A   A + G  +  K++D      +   
Sbjct: 328 HCG--CVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDIGEVALEELI 385

Query: 351 KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKI 410
           K+   +   + ++   Y   GR D+A  L   M +    T     AG + I   D  VK 
Sbjct: 386 KLEPRNPANFVMLSNIYGDAGRFDDAARLKVAMRD----TGFKKEAGVSWIETDDGLVKF 441

Query: 411 FEEMGKRRNT 420
           +    K   T
Sbjct: 442 YSSGEKHPRT 451



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 164/371 (44%), Gaps = 53/371 (14%)

Query: 137 KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEA 196
           +++   W +M+ GY    +   A++  D  P ++IV WN+M+SGY + G M  A   F+ 
Sbjct: 56  EKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLFDQ 115

Query: 197 MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA---- 252
           M  RDV+SWN +L+GY  + D+++  + F  +PE+NV SW  ++ GYA+NGR+ E     
Sbjct: 116 MPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSF 175

Query: 253 RRLFDQMPI-------------------------------------RNVVAWNAMIAAYV 275
           +R+ D+  +                                      +V   NA+I  Y 
Sbjct: 176 KRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYG 235

Query: 276 QRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG 335
           + G IE A  +F  +  R+ +SW TMI+G        EA  L  +M    I+       G
Sbjct: 236 KCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVG 295

Query: 336 YV-QNKRM---DEANQIFDKIGTH-----DVVCWNVMIKGYAQCGRMDEAINLFRQM-VN 385
            +   K M   ++    F+ + T      ++     ++   ++ G + +A+    +M V 
Sbjct: 296 VLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMPVK 355

Query: 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK--RRNTVSWNALISGFLQNEFHLDALKIF 443
            D V W T++      +++D      EE+ K   RN  ++  L + +       DA ++ 
Sbjct: 356 ADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYGDAGRFDDAARLK 415

Query: 444 VLMTQEGKKAD 454
           V M   G K +
Sbjct: 416 VAMRDTGFKKE 426



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 136/322 (42%), Gaps = 47/322 (14%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  +      G +E   ++F  M ++N  ++N +I  YA+NGRV++    F++M  
Sbjct: 121 VMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVD 180

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD-- 132
              V                           P+  +  L+++   + G  +  + +    
Sbjct: 181 EGSVV--------------------------PNDATMTLVLSACAKLGAFDFGKWVHKYG 214

Query: 133 --LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
             L  NK D    NA++  Y K G    A ++   +  ++++SWN+M++G   +G    A
Sbjct: 215 ETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEA 274

Query: 191 SKFFEAMEER----DVVSWNLMLD-----GYVE--LDDLDSAWKFFQKIPEQNVVSWVTM 239
              F  M+      D V++  +L      G VE  L   +S +  F  +PE      V  
Sbjct: 275 LNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVD 334

Query: 240 LSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAA---YVQRGQIEEAARLFIEMPERNP 295
           L   +R G + +A    ++MP++ + V W  ++ A   Y +    E A    I++  RNP
Sbjct: 335 L--LSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNP 392

Query: 296 VSWTTMIDGYVRIAKLDEARRL 317
            ++  + + Y    + D+A RL
Sbjct: 393 ANFVMLSNIYGDAGRFDDAARL 414


>gi|357481329|ref|XP_003610950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512285|gb|AES93908.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 831

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 212/763 (27%), Positives = 367/763 (48%), Gaps = 103/763 (13%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S  F  N  I    K  ++  A  +F ++  KN  +YN+++SA+ K+  +  A +LF QM
Sbjct: 38  SDTFLCNHLIDLYSKCNQITSAHHVFDKIPHKNIFSYNAILSAFCKSNNLQYACRLFLQM 97

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMF-----RPDLFSWALMITCYTRKGELEKA 127
           P+RN VS N++I   + N   ++A + +D M      +P   ++A + +      ++   
Sbjct: 98  PERNTVSLNTIITTMVKNGYERQALDTYDLMMVYESVKPSHITFATVFSACGGLKDVNCG 157

Query: 128 RELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
           R    L+       +    NA++  Y K G   +A ++ + +   N V++ +M+ G ++ 
Sbjct: 158 RRNHGLVLKVGFDSNIYVSNALLCMYTKCGLNEDAFRVFEGIVEPNEVTFTTMMGGLSQT 217

Query: 185 GEMHLASKFFEAME---------------------------------------------- 198
            ++    + F  M                                               
Sbjct: 218 NQVKEGLELFRLMLRKGICVDSVSLSTILVICAKGVSFGVCDDSRGLSTNAQGKQIHTLA 277

Query: 199 -----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEAR 253
                ERD+   N +LD Y +  D+DSA   F+ + + +VVSW  M+SGY       +A 
Sbjct: 278 VKHGFERDLHLCNSLLDMYAKTGDMDSAENVFENLDKHSVVSWNIMISGYGNRCDSEKAL 337

Query: 254 RLFDQMPI----RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIA 309
             F +M       + V +  M+ A V+ G ++   ++F  M   + +SW  ++ GY + A
Sbjct: 338 ECFQRMQCCGYEPDDVTYINMLTACVKSGDVKVGRQIFDCMSSPSLISWNAILSGYNQSA 397

Query: 310 KLDEARRLLDQMPYK----NIAAQTAMISGYVQNKRMDEANQIF---DKIGTH-DVVCWN 361
              EA  L  +M ++    +      ++S   +   ++   Q+     K+G + DV   +
Sbjct: 398 DHGEAVELFRKMQFQWQNPDRTTLAIILSSCAELGLLEAGKQVHAVSQKLGFYDDVYVAS 457

Query: 362 VMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
            +I  Y++CG+M+ + ++F ++   D+V WN+MIAG++      DA+  F+ M +     
Sbjct: 458 SLINVYSKCGKMEVSKHVFSKLSELDVVCWNSMIAGFSINSLEQDALACFKRMRQF---- 513

Query: 422 SWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLA 481
                  GF  +EF                     + A   S+CA L++L  G+QIH   
Sbjct: 514 -------GFFPSEF---------------------SFATIASSCAKLSSLFQGQQIHAQI 545

Query: 482 IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
           IK GYV+++FVG+SL+ MY KCG +  A   F      ++++WN +I GYA NG   EA+
Sbjct: 546 IKDGYVDNVFVGSSLVEMYCKCGDVGAARYYFDMMPGKNIVTWNEMIHGYAHNGYGLEAV 605

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601
            L+++M+  G  PD +TF+ VL+ACSH  LVD G+++F  M + + + P ++HY C+ID 
Sbjct: 606 SLYKDMISSGEKPDDITFVAVLTACSHSALVDEGVEIFSSMLQKFEVVPKLDHYTCIIDC 665

Query: 602 LSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCY 661
           L R GR +E   ++  M  K +  +W  +L +CR+H N+ L + A E+L  L P+ ++ Y
Sbjct: 666 LGRVGRFNEVEVILDTMPYKDDTIVWEVVLSSCRVHANVSLAKRAAEELHRLNPRNSAPY 725

Query: 662 ALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQI 704
            LL+NM++  GRWD+ + VR  M  +   K PG S  E K  +
Sbjct: 726 VLLANMYSSMGRWDDAQVVRDLMSDNQIHKDPGYSRSEFKYDV 768



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 107/234 (45%), Gaps = 30/234 (12%)

Query: 3   ASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRV 62
           A++ S   K S +F   +   Q+ K G V+            N    +S++  Y K G V
Sbjct: 523 ATIASSCAKLSSLFQGQQIHAQIIKDGYVD------------NVFVGSSLVEMYCKCGDV 570

Query: 63  NDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCY 118
             AR  F+ MP +N+V+WN MI GY HN    EA  L+  M     +PD  ++  ++T  
Sbjct: 571 GAARYYFDMMPGKNIVTWNEMIHGYAHNGYGLEAVSLYKDMISSGEKPDDITFVAVLTAC 630

Query: 119 TRKGELEKAREL-------FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK-N 170
           +    +++  E+       F+++P  +   C   ++    ++G +NE + +LD MP K +
Sbjct: 631 SHSALVDEGVEIFSSMLQKFEVVPKLDHYTC---IIDCLGRVGRFNEVEVILDTMPYKDD 687

Query: 171 IVSWNSMLSGYTKNGEMHLASKFFEAMEE---RDVVSWNLMLDGYVELDDLDSA 221
            + W  +LS    +  + LA +  E +     R+   + L+ + Y  +   D A
Sbjct: 688 TIVWEVVLSSCRVHANVSLAKRAAEELHRLNPRNSAPYVLLANMYSSMGRWDDA 741



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 91/227 (40%), Gaps = 60/227 (26%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           L +C    +L   + IH    +    +D F+ N LI +Y+KC +I +A  +F      ++
Sbjct: 12  LQSCITNKSLSSAKIIHARIFRFTLFSDTFLCNHLIDLYSKCNQITSAHHVFDKIPHKNI 71

Query: 522 ISWNSLIAGYAINGNATEAIKLFEE--------------------------------MVM 549
            S+N++++ +  + N   A +LF +                                MV 
Sbjct: 72  FSYNAILSAFCKSNNLQYACRLFLQMPERNTVSLNTIITTMVKNGYERQALDTYDLMMVY 131

Query: 550 EGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM-------------TEVYAIEPLVEHYA 596
           E V P  +TF  V SAC       GGLK   C              + +Y    L+    
Sbjct: 132 ESVKPSHITFATVFSAC-------GGLKDVNCGRRNHGLVLKVGFDSNIYVSNALL---- 180

Query: 597 CMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLG 643
           CM    ++ G  ++AF + +G+ ++PN   + T++G       +K G
Sbjct: 181 CM---YTKCGLNEDAFRVFEGI-VEPNEVTFTTMMGGLSQTNQVKEG 223


>gi|302770793|ref|XP_002968815.1| hypothetical protein SELMODRAFT_90382 [Selaginella moellendorffii]
 gi|300163320|gb|EFJ29931.1| hypothetical protein SELMODRAFT_90382 [Selaginella moellendorffii]
          Length = 570

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 191/590 (32%), Positives = 319/590 (54%), Gaps = 53/590 (8%)

Query: 93  VKEARELFDKMFRPD----LFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVA 148
           + EAR L  ++ R +     +   L++  Y + G +E+AR  FD +P   D + WN ++A
Sbjct: 18  LSEARRLHAEIARCERLRCTYLLNLVVEMYGKCGAVEEARSAFDSMPLPNDFS-WNILIA 76

Query: 149 GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLM 208
            YAK G   +A+ LLD MP   +VS  SM+S Y ++G +  A + F +   RDV+ W  +
Sbjct: 77  AYAKNGFLAQARVLLDQMPCHCLVSRCSMISAYAQHGLVAAAEEIFTSTRGRDVICWTGL 136

Query: 209 LDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN 268
           L+G+    + D A   F+ +P+QN+V WV M+SGYA+ G+   A+ +FD  P R+   WN
Sbjct: 137 LEGFSLAGNFDRARALFEAMPQQNLVGWVVMMSGYAQRGQHDRAKEIFDWAPSRDATLWN 196

Query: 269 AMIAAYVQR-GQIEEAAR-LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
            MI++Y Q  G++ + AR +F  MP  + V+W T+I GY      D+A  L  ++P +++
Sbjct: 197 VMISSYTQSPGELLQEARFVFQRMPCHDAVTWNTLIAGYAEGGLADDAIDLFRRIPERSV 256

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
            ++T+++S Y Q+  + EA ++FD I   DVV WNVM   YAQ G +  A  +F ++  +
Sbjct: 257 RSRTSILSAYAQSGSLREAKEMFDGISELDVVAWNVMAGAYAQAGHIATAKLMFDRIPKR 316

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRN-TVSWNALISGFLQNEFHLDALKIFVL 445
           + ++W  +++ ++    + ++  +F  M +R +  VSWNA++S + Q+   L A  +   
Sbjct: 317 NSISWYVLLSAFSHAGMVGESQGLFATMPERDSLAVSWNAIVSAYCQHGKLLQARAM--- 373

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
                   + S   C++S                              N+L+  YA  G+
Sbjct: 374 -------VERSPQQCSVSL-----------------------------NALVAAYAHAGQ 397

Query: 506 IQNAELLFKDADP-VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLS 564
           ++ A+ +F    P  D +SW S+I  YA NG+  EA  LF  M++EG APD VTF G+L 
Sbjct: 398 LEQADSIFFAKMPEKDTVSWTSIIQAYAQNGHTDEAFDLFHRMLLEGDAPDEVTFFGILG 457

Query: 565 ACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNA 624
           AC H GL +     F  M+  + + P+ +HY C+I+++  AG+L+ A EM++ ++     
Sbjct: 458 ACGHNGLTERARAWFVAMSADFGVVPVFDHYCCLINVVGTAGKLELAQEMLRSVRDGLAG 517

Query: 625 G-----IWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHA 669
           G      W TLL A ++H +++L R A +    LE + +S Y LLS++ A
Sbjct: 518 GEDESVAWTTLLAASKIHGDVELARAAAKNACGLETRGSSPYMLLSHVEA 567



 Score =  263 bits (671), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 145/439 (33%), Positives = 242/439 (55%), Gaps = 9/439 (2%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +   GK G VEEA   F  M   N  ++N +I+AYAKNG +  AR L +QMP   LV
Sbjct: 41  NLVVEMYGKCGAVEEARSAFDSMPLPNDFSWNILIAAYAKNGFLAQARVLLDQMPCHCLV 100

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           S  SMI+ Y  +  V  A E+F      D+  W  ++  ++  G  ++AR LF+ +P ++
Sbjct: 101 SRCSMISAYAQHGLVAAAEEIFTSTRGRDVICWTGLLEGFSLAGNFDRARALFEAMP-QQ 159

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN-GEMHLASKF-FEA 196
           +   W  M++GYA+ G ++ AK++ D  PS++   WN M+S YT++ GE+   ++F F+ 
Sbjct: 160 NLVGWVVMMSGYAQRGQHDRAKEIFDWAPSRDATLWNVMISSYTQSPGELLQEARFVFQR 219

Query: 197 MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF 256
           M   D V+WN ++ GY E    D A   F++IPE++V S  ++LS YA++G + EA+ +F
Sbjct: 220 MPCHDAVTWNTLIAGYAEGGLADDAIDLFRRIPERSVRSRTSILSAYAQSGSLREAKEMF 279

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
           D +   +VVAWN M  AY Q G I  A  +F  +P+RN +SW  ++  +     + E++ 
Sbjct: 280 DGISELDVVAWNVMAGAYAQAGHIATAKLMFDRIPKRNSISWYVLLSAFSHAGMVGESQG 339

Query: 317 LLDQMPYKNIAAQT--AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMD 374
           L   MP ++  A +  A++S Y Q+ ++ +A  + ++      V  N ++  YA  G+++
Sbjct: 340 LFATMPERDSLAVSWNAIVSAYCQHGKLLQARAMVERSPQQCSVSLNALVAAYAHAGQLE 399

Query: 375 EAINL-FRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALISGF 430
           +A ++ F +M  KD V+W ++I  YAQ    D+A  +F  M   G   + V++  ++   
Sbjct: 400 QADSIFFAKMPEKDTVSWTSIIQAYAQNGHTDEAFDLFHRMLLEGDAPDEVTFFGILGAC 459

Query: 431 LQNEFHLDALKIFVLMTQE 449
             N     A   FV M+ +
Sbjct: 460 GHNGLTERARAWFVAMSAD 478



 Score =  250 bits (639), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 147/530 (27%), Positives = 262/530 (49%), Gaps = 16/530 (3%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQ----KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           +   G +  + EA ++ +++++    + T   N ++  Y K G V +AR  F+ MP  N 
Sbjct: 9   VRACGNARNLSEARRLHAEIARCERLRCTYLLNLVVEMYGKCGAVEEARSAFDSMPLPND 68

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
            SWN +IA Y  N  + +AR L D+M    L S   MI+ Y + G +  A E+F     +
Sbjct: 69  FSWNILIAAYAKNGFLAQARVLLDQMPCHCLVSRCSMISAYAQHGLVAAAEEIFTSTRGR 128

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            D  CW  ++ G++  GN++ A+ L +AMP +N+V W  M+SGY + G+   A + F+  
Sbjct: 129 -DVICWTGLLEGFSLAGNFDRARALFEAMPQQNLVGWVVMMSGYAQRGQHDRAKEIFDWA 187

Query: 198 EERDVVSWNLMLDGYVELDD--LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRL 255
             RD   WN+M+  Y +     L  A   FQ++P  + V+W T+++GYA  G   +A  L
Sbjct: 188 PSRDATLWNVMISSYTQSPGELLQEARFVFQRMPCHDAVTWNTLIAGYAEGGLADDAIDL 247

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR 315
           F ++P R+V +  ++++AY Q G + EA  +F  + E + V+W  M   Y +   +  A+
Sbjct: 248 FRRIPERSVRSRTSILSAYAQSGSLREAKEMFDGISELDVVAWNVMAGAYAQAGHIATAK 307

Query: 316 RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHD--VVCWNVMIKGYAQCGRM 373
            + D++P +N  +   ++S +     + E+  +F  +   D   V WN ++  Y Q G++
Sbjct: 308 LMFDRIPKRNSISWYVLLSAFSHAGMVGESQGLFATMPERDSLAVSWNAIVSAYCQHGKL 367

Query: 374 DEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433
            +A  +  +   +  V+ N ++A YA   Q++ A  IF      ++TVSW ++I  + QN
Sbjct: 368 LQARAMVERSPQQCSVSLNALVAAYAHAGQLEQADSIFFAKMPEKDTVSWTSIIQAYAQN 427

Query: 434 EFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ-IHHLAIKSGYVNDLFV 492
               +A  +F  M  EG   D  T    L AC H    +  R     ++   G V     
Sbjct: 428 GHTDEAFDLFHRMLLEGDAPDEVTFFGILGACGHNGLTERARAWFVAMSADFGVVPVFDH 487

Query: 493 GNSLITMYAKCGRIQNAELLFKD------ADPVDVISWNSLIAGYAINGN 536
              LI +    G+++ A+ + +           + ++W +L+A   I+G+
Sbjct: 488 YCCLINVVGTAGKLELAQEMLRSVRDGLAGGEDESVAWTTLLAASKIHGD 537



 Score =  229 bits (583), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 118/374 (31%), Positives = 206/374 (55%), Gaps = 6/374 (1%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F+ N  I    K+G + +A  +  QM     V+  SMISAYA++G V  A ++F     R
Sbjct: 69  FSWNILIAAYAKNGFLAQARVLLDQMPCHCLVSRCSMISAYAQHGLVAAAEEIFTSTRGR 128

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           +++ W  ++ G+        AR LF+ M + +L  W +M++ Y ++G+ ++A+E+FD  P
Sbjct: 129 DVICWTGLLEGFSLAGNFDRARALFEAMPQQNLVGWVVMMSGYAQRGQHDRAKEIFDWAP 188

Query: 136 NKEDTACWNAMVAGYAKIGN--YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
           ++ D   WN M++ Y +       EA+ +   MP  + V+WN++++GY + G    A   
Sbjct: 189 SR-DATLWNVMISSYTQSPGELLQEARFVFQRMPCHDAVTWNTLIAGYAEGGLADDAIDL 247

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEAR 253
           F  + ER V S   +L  Y +   L  A + F  I E +VV+W  M   YA+ G +  A+
Sbjct: 248 FRRIPERSVRSRTSILSAYAQSGSLREAKEMFDGISELDVVAWNVMAGAYAQAGHIATAK 307

Query: 254 RLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP--VSWTTMIDGYVRIAKL 311
            +FD++P RN ++W  +++A+   G + E+  LF  MPER+   VSW  ++  Y +  KL
Sbjct: 308 LMFDRIPKRNSISWYVLLSAFSHAGMVGESQGLFATMPERDSLAVSWNAIVSAYCQHGKL 367

Query: 312 DEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQI-FDKIGTHDVVCWNVMIKGYAQC 370
            +AR ++++ P +   +  A+++ Y    ++++A+ I F K+   D V W  +I+ YAQ 
Sbjct: 368 LQARAMVERSPQQCSVSLNALVAAYAHAGQLEQADSIFFAKMPEKDTVSWTSIIQAYAQN 427

Query: 371 GRMDEAINLFRQMV 384
           G  DEA +LF +M+
Sbjct: 428 GHTDEAFDLFHRML 441



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 9/160 (5%)

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
           A  + AC +   L   R++H    +   +   ++ N ++ MY KCG ++ A   F     
Sbjct: 6   AGGVRACGNARNLSEARRLHAEIARCERLRCTYLLNLVVEMYGKCGAVEEARSAFDSMPL 65

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
            +  SWN LIA YA NG   +A  L ++M    +    V+   ++SA +  GLV    ++
Sbjct: 66  PNDFSWNILIAAYAKNGFLAQARVLLDQMPCHCL----VSRCSMISAYAQHGLVAAAEEI 121

Query: 579 FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
           F   T     + +   +  +++  S AG  D A  + + M
Sbjct: 122 F---TSTRGRDVIC--WTGLLEGFSLAGNFDRARALFEAM 156


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 207/679 (30%), Positives = 365/679 (53%), Gaps = 78/679 (11%)

Query: 112 ALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI 171
           AL + C    G++     L D+  N      W++++ G          +K+ + M  +N+
Sbjct: 79  ALCVRCGHDHGDIRVGTSLVDMYMN------WHSVLDG----------RKVFEGMLKRNV 122

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ 231
           V+W S+L+GY + G +      F  M    V          + +          Q +  Q
Sbjct: 123 VTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQ 182

Query: 232 NV----VSWV----TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEA 283
           ++     S V    ++++ YA+ G + EAR +F +M  R++V+WN ++A  V  G+  EA
Sbjct: 183 SIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEA 242

Query: 284 ARLFIEMPERNPVS------WTTMIDGYVRIAKLDEARRLLDQM------PYKNIAAQTA 331
            +LF +   R+ ++      ++T+I+    +  L  AR+L   +       Y N+   TA
Sbjct: 243 LQLFHD--SRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNV--MTA 298

Query: 332 MISGYVQNKRMDEANQIFDKI-GTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNK 386
           ++  Y +  ++D+A  +F  + G+ +VV W  MI G  Q G +  A  LF +M    V  
Sbjct: 299 LMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAP 358

Query: 387 DIVTWNTMIA-------------------------------GYAQIRQMDDAVKIFEEMG 415
           + +T++T++                                 Y+++   ++A+ IF+ M 
Sbjct: 359 NDLTYSTILTVSEASFPPQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFK-MI 417

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAA-LQLG 474
            +++ VSW+A+++ + Q      A   F+ MT  G K +  T++ A+ ACA  AA + LG
Sbjct: 418 DQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLG 477

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
           RQ H ++IK    + L V ++L++MYA+ G I+NA+ +F+     D++SWNS+++GYA +
Sbjct: 478 RQFHAISIKHRCHDALCVSSALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQH 537

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEH 594
           G + +A+ +F +M +EG+  D +TF+ V+  C+H GLV+ G + F+ M   Y I P ++H
Sbjct: 538 GYSQKALDVFRQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDH 597

Query: 595 YACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE 654
           YACM+DL SRAG+LDE   +++GM       IW  LLGACR+H+N++LG++A EKL  LE
Sbjct: 598 YACMVDLYSRAGKLDETMSLIEGMPFPAGPTIWRALLGACRVHKNVELGKLAAEKLLSLE 657

Query: 655 PQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQ 714
           P  ++ Y LLSN+++ AG+W E ++VR  M+    +K+ GCSWI++KN++H F++ D   
Sbjct: 658 PLDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVRKEAGCSWIQIKNKVHFFIASDKSH 717

Query: 715 CRTAEICNTLKTLAAQIRN 733
             + +I   L+ + A+++ 
Sbjct: 718 PLSEQIYAKLRAMTAKLKQ 736



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 131/582 (22%), Positives = 254/582 (43%), Gaps = 82/582 (14%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
            S++  Y     V D RK+FE M +RN+V+W S++ GY+    + +   LF +M      
Sbjct: 95  TSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVW 154

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTAC------WNAMVAGYAKIGNYNEA 159
           P+ F+++ +++    +G ++  + +           C       N+++  YAK G   EA
Sbjct: 155 PNPFTFSSVLSMVASQGMVDLGQHVH---AQSIKFGCCSTVFVCNSLMNMYAKCGLVEEA 211

Query: 160 KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV------SWNLMLDGYV 213
           + +   M ++++VSWN++++G   NG    A + F   + R  +      +++ +++   
Sbjct: 212 RVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFH--DSRSSITMLTESTYSTVINLCA 269

Query: 214 ELDDLDSAWKFFQKIPEQNVVSW----VTMLSGYARNGRMLEARRLFDQMP-IRNVVAWN 268
            L  L  A +    + +    S+      ++  Y + G++ +A  +F  M   +NVV+W 
Sbjct: 270 NLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWT 329

Query: 269 AMIAAYVQRGQIEEAARLFIEMPE----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
           AMI   +Q G I  AA LF  M E     N ++++T++     +++     ++  Q+   
Sbjct: 330 AMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTIL----TVSEASFPPQIHAQVIKT 385

Query: 325 NIAAQ----TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF 380
           N        TA++  Y +    +EA  IF  I   DVV W+ M+  YAQ G  + A N F
Sbjct: 386 NYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAF 445

Query: 381 RQMV----------------------------------------NKDIVTWNTMIAGYAQ 400
            +M                                         +  +   + +++ YA+
Sbjct: 446 IKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRCHDALCVSSALVSMYAR 505

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
              +++A  +FE     R+ +SWN+++SG+ Q+ +   AL +F  M  EG   D  T   
Sbjct: 506 KGSIENAQCVFERQ-TDRDLLSWNSMLSGYAQHGYSQKALDVFRQMEVEGIDMDGLTFLS 564

Query: 461 ALSACAHLAALQLGRQIHHLAIKS-GYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD-P 518
            +  CAH   ++ G+Q   L ++  G    +     ++ +Y++ G++     L +    P
Sbjct: 565 VIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAGKLDETMSLIEGMPFP 624

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
                W +L+    ++ N  E  KL  E ++     D  T++
Sbjct: 625 AGPTIWRALLGACRVHKN-VELGKLAAEKLLSLEPLDSATYV 665



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 96/434 (22%), Positives = 192/434 (44%), Gaps = 65/434 (14%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFE-- 70
           S VF  N  +    K G VEEA  +F +M  ++ V++N++++    NGR  +A +LF   
Sbjct: 190 STVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDS 249

Query: 71  --QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMIT----CYTRKGEL 124
              +      +++++I    +   +  AR+L   + +    S+  ++T     Y + G+L
Sbjct: 250 RSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQL 309

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP----SKNIVSWNSMLS- 179
           +KA ++F L+   ++   W AM+ G  + G+   A  L   M     + N ++++++L+ 
Sbjct: 310 DKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILTV 369

Query: 180 ------------------------------GYTKNGEMHLASKFFEAMEERDVVSWNLML 209
                                          Y+K      A   F+ ++++DVVSW+ ML
Sbjct: 370 SEASFPPQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAML 429

Query: 210 DGYVELDDLDSAWKFFQKI------PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRN 263
             Y +  D + A   F K+      P +  +S  + +   A     ++  R F  + I++
Sbjct: 430 TCYAQAGDCNGATNAFIKMTMHGLKPNEFTIS--SAIDACASPAAGVDLGRQFHAISIKH 487

Query: 264 -----VVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
                +   +A+++ Y ++G IE A  +F    +R+ +SW +M+ GY +     +A  + 
Sbjct: 488 RCHDALCVSSALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKALDVF 547

Query: 319 DQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIG-----THDVVCWNVMIKGYAQ 369
            QM  + I        ++I G      ++E  Q FD +      T  +  +  M+  Y++
Sbjct: 548 RQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSR 607

Query: 370 CGRMDEAINLFRQM 383
            G++DE ++L   M
Sbjct: 608 AGKLDETMSLIEGM 621



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 23/223 (10%)

Query: 420 TVSWNALISGFLQN--EFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI 477
           T+ ++    GF+    +  LDA +      ++G+      L   +  C  +    LG+Q+
Sbjct: 24  TMPFSTTWQGFVHQALDHFLDAHR------RQGRCVGGGALLGIIKICGSVPDRVLGKQL 77

Query: 478 HHLAIKSGYVN-DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGN 536
           H L ++ G+ + D+ VG SL+ MY     + +   +F+     +V++W SL+ GY   G 
Sbjct: 78  HALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGV 137

Query: 537 ATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL------FECMTEVYAIEP 590
             + + LF  M  EGV P+P TF  VLS  +  G+VD G  +      F C + V+    
Sbjct: 138 LLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCNS 197

Query: 591 LVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
           L+  YA       + G ++EA  +   M+ +     W TL+  
Sbjct: 198 LMNMYA-------KCGLVEEARVVFCRMETRDMVS-WNTLMAG 232


>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
 gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
          Length = 650

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 184/482 (38%), Positives = 278/482 (57%), Gaps = 11/482 (2%)

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
           +V   NA +  +   G +  A RLF E P R+ VSW T+I GYVR     EA  L  ++ 
Sbjct: 155 DVFVVNAGVHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLV 214

Query: 323 YKNIAAQT------AMISGYVQNKRMDEANQIFDKIGTHDVVC----WNVMIKGYAQCGR 372
               A +         +SG  Q   ++   ++ + + +  V C     N ++  Y +CG 
Sbjct: 215 EDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGS 274

Query: 373 MDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
           ++ A ++F ++ NK +V+W TMI G+A++  M+DA  +F+EM   R+   WNAL++G++Q
Sbjct: 275 LELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEM-PERDVFPWNALMAGYVQ 333

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
           N+   +A+ +F  M +     +  T+   LSAC+ L AL++G  +HH   +      + +
Sbjct: 334 NKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVAL 393

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
           G SL+ MYAKCG I+ A  +FK+    + ++W ++I G A +G+A EAI+ F+ M+  G+
Sbjct: 394 GTSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGL 453

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
            PD +TFIGVLSAC H GLV  G + F  M E Y +E  ++HY+CMIDLL RAG LDEA 
Sbjct: 454 QPDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAE 513

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672
           ++V  M + P+A +WG L  ACRMH NI LG  A  KL EL+P  +  Y LL+NM+AEA 
Sbjct: 514 QLVNTMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEAN 573

Query: 673 RWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
              + +KVRV M   G +K PGCS IE+   +H F+  D     T  I + L  +  Q++
Sbjct: 574 MRKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHLDTIAIYDCLHGITLQMK 633

Query: 733 NT 734
           +T
Sbjct: 634 HT 635



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/378 (26%), Positives = 181/378 (47%), Gaps = 27/378 (7%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF---- 100
           +    N+ +  ++ +G +  AR+LF++ P R++VSWN++I GY+ +   +EA ELF    
Sbjct: 155 DVFVVNAGVHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLV 214

Query: 101 --DKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGN 155
              K  RPD  +    ++   + G+LE  + L + + +K         NA++  Y K G+
Sbjct: 215 EDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGS 274

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
              AK + + + +K +VSW +M+ G+ + G M  A   F+ M ERDV  WN ++ GYV+ 
Sbjct: 275 LELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQN 334

Query: 216 DDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRM---LEARRLFDQMPIRNVVAW- 267
                A   F ++ E  V    ++ V +LS  ++ G +   +      D+  +   VA  
Sbjct: 335 KQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALG 394

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA----RRLLDQMPY 323
            +++  Y + G I++A  +F E+P++N ++WT MI G       DEA    +R++D    
Sbjct: 395 TSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQ 454

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIFDKIG-----THDVVCWNVMIKGYAQCGRMDEAIN 378
            +      ++S       + E  Q F  +         +  ++ MI    + G +DEA  
Sbjct: 455 PDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQ 514

Query: 379 LFRQM-VNKDIVTWNTMI 395
           L   M ++ D V W  + 
Sbjct: 515 LVNTMPMDPDAVVWGALF 532



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 176/361 (48%), Gaps = 28/361 (7%)

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           F  D+F     +  ++  G +  AR LFD  P + D   WN ++ GY + G   EA +L 
Sbjct: 152 FSADVFVVNAGVHFWSVSGSMVLARRLFDESPAR-DVVSWNTLIGGYVRSGLPREALELF 210

Query: 164 -----DAMPSK-NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS----WNLMLDGYV 213
                D    + + V+    +SG  + G++ L  +  E ++ + V       N ++D YV
Sbjct: 211 WRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYV 270

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
           +   L+ A   F++I  + VVSW TM+ G+AR G M +AR LFD+MP R+V  WNA++A 
Sbjct: 271 KCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAG 330

Query: 274 YVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEA---RRLLDQMP-YKN 325
           YVQ  Q +EA  LF EM E     N ++   ++    ++  L+        +D+   Y +
Sbjct: 331 YVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLS 390

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
           +A  T+++  Y +   + +A  IF +I   + + W  MI G A  G  DEAI  F++M++
Sbjct: 391 VALGTSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMID 450

Query: 386 ----KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR----RNTVSWNALISGFLQNEFHL 437
                D +T+  +++       + +  + F  M ++    R    ++ +I   L    HL
Sbjct: 451 LGLQPDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMID-LLGRAGHL 509

Query: 438 D 438
           D
Sbjct: 510 D 510



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 170/356 (47%), Gaps = 25/356 (7%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K G +E A  +F ++  K  V++ +MI  +A+ G + DAR LF++MP+R++  WN+++AG
Sbjct: 271 KCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAG 330

Query: 87  YLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKE---D 139
           Y+ N + KEA  LF +M      P+  +   +++  ++ G LE    +   +   +    
Sbjct: 331 YVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLS 390

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM-- 197
            A   ++V  YAK GN  +A  +   +P KN ++W +M+ G   +G    A ++F+ M  
Sbjct: 391 VALGTSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMID 450

Query: 198 --EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ-----NVVSWVTMLSGYARNGRML 250
              + D +++  +L        +    +FF  + E+      +  +  M+    R G + 
Sbjct: 451 LGLQPDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLD 510

Query: 251 EARRLFDQMPI-RNVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTTMIDGYV 306
           EA +L + MP+  + V W A+  A    G I   E+AA   +E+   +   +  + + Y 
Sbjct: 511 EAEQLVNTMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYA 570

Query: 307 RI---AKLDEARRLLDQMPYKNIAAQTAM-ISGYVQNKRMDEANQIFDKIGTHDVV 358
                 K D+ R ++  +  + +   + + ++G V    + + + + D I  +D +
Sbjct: 571 EANMRKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHL-DTIAIYDCL 625



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 3/169 (1%)

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG 504
           L+     + DH T    L ACA L     G  +     K G+  D+FV N+ +  ++  G
Sbjct: 111 LLCSSSARPDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSG 170

Query: 505 RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG--VAPDPVTFIGV 562
            +  A  LF ++   DV+SWN+LI GY  +G   EA++LF  +V +G  V PD VT IG 
Sbjct: 171 SMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGA 230

Query: 563 LSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
           +S C+ +G ++ G +L E   +   +   V     ++D+  + G L+ A
Sbjct: 231 VSGCAQMGDLELGKRLHE-FVDSKGVRCTVRLMNAVMDMYVKCGSLELA 278


>gi|302760807|ref|XP_002963826.1| hypothetical protein SELMODRAFT_79356 [Selaginella moellendorffii]
 gi|300169094|gb|EFJ35697.1| hypothetical protein SELMODRAFT_79356 [Selaginella moellendorffii]
          Length = 535

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 173/532 (32%), Positives = 284/532 (53%), Gaps = 29/532 (5%)

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV 213
           GN  EA+K  D+MP ++ VSW  M+S Y + G +  A   FE++  + +   N ML  Y 
Sbjct: 14  GNVQEARKFFDSMPLQDSVSWTIMVSAYAQGGHIEQAKNLFESLPWKSLACENAMLQAYS 73

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
              DL++A   F ++ +++VVSW TM+  YA+NG   +A+ LFD+   +N+++W AM+ A
Sbjct: 74  LNGDLENAKLVFDRMTKRDVVSWTTMIGAYAQNGYAFDAKSLFDRFERKNIISWTAMVHA 133

Query: 274 YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMI 333
           Y Q    + A  +F  MP+ +  SW  ++  Y     L+ A+   ++MP +++ A  ++I
Sbjct: 134 YSQNKSFDLAREMFERMPQHDVFSWNILLSAYAHNGHLESAKIAFERMPSRDVVAWNSII 193

Query: 334 SGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNT 393
           + + Q  +++EA ++F  +   +   WNVMI+  AQ   +D A  LF QM ++D+++W T
Sbjct: 194 AFFSQKGKLEEAKELFHLMPEPNTAAWNVMIQANAQAWHLDVAKGLFDQMPSRDVISWTT 253

Query: 394 MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA 453
           ++  YA +  +D   +                             A+ +F LM   G   
Sbjct: 254 LMNSYADMSNLDGCQE----------------------------SAMDVFRLMDLHGVSP 285

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND-LFVGNSLITMYAKCGRIQNAELL 512
           D  T      AC+ +A  + G       +  G + D + VGN+ +TMY + G    A  +
Sbjct: 286 DSVTYIAIFDACSRIANAEEGSAFIASIVHPGILQDSVVVGNAALTMYGRSGLAAGAWSV 345

Query: 513 FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
           F+     D +SWN+++  +A NG+   A+ +F  M +EG+ PD +TF+ VLSACSH GL+
Sbjct: 346 FQQMPVRDSVSWNAMLTAFARNGHGEAALDVFLAMELEGLVPDIITFVNVLSACSHAGLL 405

Query: 573 DGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLG 632
                 F  ++  Y + P+ +HY C+ DLL+R+GRL EA E+V  M  +PN   W  LLG
Sbjct: 406 HRARGYFHSISRDYGLTPIYDHYVCLTDLLARSGRLVEAEELVNSMPFEPNYEAWMALLG 465

Query: 633 ACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSM 684
           ACR H +++ G  A     + +    S Y LLS+++AEAG  D+V  +R +M
Sbjct: 466 ACRSHGDVRRGNRAAGFFVQADVDAESPYILLSHLYAEAGSKDDVLVIRKAM 517



 Score =  222 bits (565), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 146/484 (30%), Positives = 232/484 (47%), Gaps = 55/484 (11%)

Query: 47  VTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP 106
           +T NS +      G V +ARK F+ MP ++ VSW  M++ Y     +++A+ LF+ +   
Sbjct: 1   MTLNSALQLQNLCGNVQEARKFFDSMPLQDSVSWTIMVSAYAQGGHIEQAKNLFESLPWK 60

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
            L     M+  Y+  G+LE A+ +FD +  K D   W  M+  YA+ G   +AK L D  
Sbjct: 61  SLACENAMLQAYSLNGDLENAKLVFDRM-TKRDVVSWTTMIGAYAQNGYAFDAKSLFDRF 119

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
             KNI+SW +M+  Y++N    LA + FE M + DV SWN++L  Y     L+SA   F+
Sbjct: 120 ERKNIISWTAMVHAYSQNKSFDLAREMFERMPQHDVFSWNILLSAYAHNGHLESAKIAFE 179

Query: 227 KIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
           ++P ++VV+W ++++ +++ G++ EA+ LF  MP  N  AWN MI A  Q   ++ A  L
Sbjct: 180 RMPSRDVVAWNSIIAFFSQKGKLEEAKELFHLMPEPNTAAWNVMIQANAQAWHLDVAKGL 239

Query: 287 FIEMPERNPVSWTTMIDGYVRIAKLD-------EARRLL-------DQMPYKNIAAQTAM 332
           F +MP R+ +SWTT+++ Y  ++ LD       +  RL+       D + Y  I    + 
Sbjct: 240 FDQMPSRDVISWTTLMNSYADMSNLDGCQESAMDVFRLMDLHGVSPDSVTYIAIFDACSR 299

Query: 333 ISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWN 392
           I+   +      A+ +   I    VV  N  +  Y + G    A ++F+QM  +D V+WN
Sbjct: 300 IANAEEGSAF-IASIVHPGILQDSVVVGNAALTMYGRSGLAAGAWSVFQQMPVRDSVSWN 358

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
            M+  +A                                +N     AL +F+ M  EG  
Sbjct: 359 AMLTAFA--------------------------------RNGHGEAALDVFLAMELEGLV 386

Query: 453 ADHSTLACALSACAHLAALQLGRQIHHLAIKSGY----VNDLFVGNSLITMYAKCGRIQN 508
            D  T    LSAC+H   L   R   H +I   Y    + D +V   L  + A+ GR+  
Sbjct: 387 PDIITFVNVLSACSHAGLLHRARGYFH-SISRDYGLTPIYDHYV--CLTDLLARSGRLVE 443

Query: 509 AELL 512
           AE L
Sbjct: 444 AEEL 447



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 202/408 (49%), Gaps = 41/408 (10%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           ++   + G +E+A  +F  +  K+    N+M+ AY+ NG + +A+ +F++M +R++VSW 
Sbjct: 38  VSAYAQGGHIEQAKNLFESLPWKSLACENAMLQAYSLNGDLENAKLVFDRMTKRDVVSWT 97

Query: 82  SMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTA 141
           +MI  Y  N    +A+ LFD+  R ++ SW  M+  Y++    + ARE+F+ +P + D  
Sbjct: 98  TMIGAYAQNGYAFDAKSLFDRFERKNIISWTAMVHAYSQNKSFDLAREMFERMP-QHDVF 156

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
            WN +++ YA  G+   AK   + MPS+++V+WNS+++ +++ G++  A + F  M E +
Sbjct: 157 SWNILLSAYAHNGHLESAKIAFERMPSRDVVAWNSIIAFFSQKGKLEEAKELFHLMPEPN 216

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR----NGRMLEARRLFD 257
             +WN+M+    +   LD A   F ++P ++V+SW T+++ YA     +G    A  +F 
Sbjct: 217 TAAWNVMIQANAQAWHLDVAKGLFDQMPSRDVISWTTLMNSYADMSNLDGCQESAMDVFR 276

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL 317
            M +  V                             + V++  + D   RIA  +E    
Sbjct: 277 LMDLHGV---------------------------SPDSVTYIAIFDACSRIANAEEGSAF 309

Query: 318 LDQMPYKNIAAQT-----AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGR 372
           +  + +  I   +     A ++ Y ++     A  +F ++   D V WN M+  +A+ G 
Sbjct: 310 IASIVHPGILQDSVVVGNAALTMYGRSGLAAGAWSVFQQMPVRDSVSWNAMLTAFARNGH 369

Query: 373 MDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
            + A+++F  M    +  DI+T+  +++  +    +  A   F  + +
Sbjct: 370 GEAALDVFLAMELEGLVPDIITFVNVLSACSHAGLLHRARGYFHSISR 417



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 119/468 (25%), Positives = 213/468 (45%), Gaps = 89/468 (19%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           +N  +     +G +E A  +F +M++++ V++ +MI AYA+NG   DA+ LF++  ++N+
Sbjct: 65  ENAMLQAYSLNGDLENAKLVFDRMTKRDVVSWTTMIGAYAQNGYAFDAKSLFDRFERKNI 124

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
           +SW +M+  Y  N     ARE+F++M + D+FSW ++++ Y   G LE A+  F+ +P++
Sbjct: 125 ISWTAMVHAYSQNKSFDLAREMFERMPQHDVFSWNILLSAYAHNGHLESAKIAFERMPSR 184

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            D   WN+++A +++ G   EAK+L   MP  N  +WN M+    +   + +A   F+ M
Sbjct: 185 -DVVAWNSIIAFFSQKGKLEEAKELFHLMPEPNTAAWNVMIQANAQAWHLDVAKGLFDQM 243

Query: 198 EERDVVSWNLMLDGYVELDDLD----SAWKFFQ--------------------------- 226
             RDV+SW  +++ Y ++ +LD    SA   F+                           
Sbjct: 244 PSRDVISWTTLMNSYADMSNLDGCQESAMDVFRLMDLHGVSPDSVTYIAIFDACSRIANA 303

Query: 227 -------------KIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
                         I + +VV     L+ Y R+G    A  +F QMP+R+ V+WNAM+ A
Sbjct: 304 EEGSAFIASIVHPGILQDSVVVGNAALTMYGRSGLAAGAWSVFQQMPVRDSVSWNAMLTA 363

Query: 274 YVQRGQIEEAARLFIEMPERNPV---------------------------------SWTT 300
           + + G  E A  +F+ M     V                                   T 
Sbjct: 364 FARNGHGEAALDVFLAMELEGLVPDIITFVNVLSACSHAGLLHRARGYFHSISRDYGLTP 423

Query: 301 MIDGYV-------RIAKLDEARRLLDQMPYK-NIAAQTAMISG---YVQNKRMDEANQIF 349
           + D YV       R  +L EA  L++ MP++ N  A  A++     +   +R + A   F
Sbjct: 424 IYDHYVCLTDLLARSGRLVEAEELVNSMPFEPNYEAWMALLGACRSHGDVRRGNRAAGFF 483

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAG 397
            +        + ++   YA+ G  D+ + + + M  K  +  + +I G
Sbjct: 484 VQADVDAESPYILLSHLYAEAGSKDDVLVIRKAMRRKTKLDQSPVILG 531



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 156/377 (41%), Gaps = 56/377 (14%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF+ N  ++    +G +E A   F +M  ++ V +NS+I+ +++ G++ +A++LF  MP+
Sbjct: 155 VFSWNILLSAYAHNGHLESAKIAFERMPSRDVVAWNSIIAFFSQKGKLEEAKELFHLMPE 214

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARE----- 129
            N  +WN MI        +  A+ LFD+M   D+ SW  ++  Y     L+  +E     
Sbjct: 215 PNTAAWNVMIQANAQAWHLDVAKGLFDQMPSRDVISWTTLMNSYADMSNLDGCQESAMDV 274

Query: 130 --LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDA---------------------- 165
             L DL     D+  + A+    ++I N  E    + +                      
Sbjct: 275 FRLMDLHGVSPDSVTYIAIFDACSRIANAEEGSAFIASIVHPGILQDSVVVGNAALTMYG 334

Query: 166 --------------MPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNL 207
                         MP ++ VSWN+ML+ + +NG    A   F AME      D++++  
Sbjct: 335 RSGLAAGAWSVFQQMPVRDSVSWNAMLTAFARNGHGEAALDVFLAMELEGLVPDIITFVN 394

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPIR 262
           +L        L  A  +F  I     ++     +V +    AR+GR++EA  L + MP  
Sbjct: 395 VLSACSHAGLLHRARGYFHSISRDYGLTPIYDHYVCLTDLLARSGRLVEAEELVNSMPFE 454

Query: 263 -NVVAWNAMIAAYVQRGQIE---EAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
            N  AW A++ A    G +     AA  F++        +  +   Y      D+   + 
Sbjct: 455 PNYEAWMALLGACRSHGDVRRGNRAAGFFVQADVDAESPYILLSHLYAEAGSKDDVLVIR 514

Query: 319 DQMPYKNIAAQTAMISG 335
             M  K    Q+ +I G
Sbjct: 515 KAMRRKTKLDQSPVILG 531


>gi|359474320|ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Vitis vinifera]
          Length = 580

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 170/434 (39%), Positives = 269/434 (61%), Gaps = 4/434 (0%)

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
            A++  Y + G +E A ++F EM ERN VSW +M+ GY++   L  A+R+ D++P K++ 
Sbjct: 147 TALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVI 206

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD 387
           +  +MISGY +   M++A+ +F ++   +   WN MI G+ + G +D A + F  M  K+
Sbjct: 207 SWNSMISGYARAGDMEKASSLFQQMPERNFASWNAMISGHVEFGDIDSARSFFDAMPQKN 266

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF--VL 445
            V+W TMI+GY++   +D A ++F+++G + + + +NA+I+ + QN    +AL +F  +L
Sbjct: 267 NVSWMTMISGYSKCGDVDSACELFDQVGGK-DLLLFNAMIACYAQNSRPNEALNLFNNML 325

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
                 + D  TLA  +SAC+ L  L+ G  I     + G   D  +  +L+ +YAKCG 
Sbjct: 326 NPYVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGS 385

Query: 506 IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565
           I  A  LF      D++++ ++I G  ING A +AIKLF+EMV   + P+ +TFIG+L+A
Sbjct: 386 IDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTA 445

Query: 566 CSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAG 625
            +H GLV+ G + F  M + Y + P V+HY  M+DL  RAGRL EA E++K M ++P+AG
Sbjct: 446 YNHAGLVEEGYRCFTSMKK-YNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAG 504

Query: 626 IWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685
           +WG LL ACR+H N++ G IA +   ELEP  T   +LLSN++A   RWD+V+++R   +
Sbjct: 505 VWGALLLACRLHNNVEFGEIAAQHCFELEPDTTGYRSLLSNIYASGERWDDVKRLRKVTK 564

Query: 686 GSGAQKQPGCSWIE 699
             G  K PGCSW+E
Sbjct: 565 EKGFSKIPGCSWME 578



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/382 (32%), Positives = 192/382 (50%), Gaps = 60/382 (15%)

Query: 106 PDLFSWALMITCYTRKGELEKARELF------DLLPNKEDTACWNAMVAGYAKIGN---- 155
           PD FSWA  I   T+ G+ ++A  L+       L P    T   ++ +   A+I      
Sbjct: 68  PDSFSWACAIRFSTQHGQFKEAFALYVQMQRWGLCPT---TFALSSALKACARIAYRMGG 124

Query: 156 ---YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY 212
              + + +K   +     I    +++  Y K G+M +A K F+ M ER+VVSWN ML GY
Sbjct: 125 ISIHGQVQKFGFSCGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGY 184

Query: 213 VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
           ++  DL  A + F +IP+++V+SW +M+SGYAR G M +A  LF QMP RN  +WNAMI+
Sbjct: 185 LKSGDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKASSLFQQMPERNFASWNAMIS 244

Query: 273 AYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAM 332
            +V+ G I+ A   F  MP++N VSW TMI GY +   +D A  L DQ+  K++    AM
Sbjct: 245 GHVEFGDIDSARSFFDAMPQKNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAM 304

Query: 333 ISGYVQNKRMDEANQIFD------------------------KIGTHDVVCW-------- 360
           I+ Y QN R +EA  +F+                        ++G      W        
Sbjct: 305 IACYAQNSRPNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRL 364

Query: 361 ---------NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIF 411
                      ++  YA+CG +D+A  LF  +  KD+V +  MI G     +  DA+K+F
Sbjct: 365 GIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLF 424

Query: 412 EEMGKRR---NTVSWNALISGF 430
           +EM   +   N++++  L++ +
Sbjct: 425 DEMVDAQIFPNSITFIGLLTAY 446



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 190/365 (52%), Gaps = 52/365 (14%)

Query: 7   SIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDAR 66
           S G  G YV  +   +    K G +E A K+F +M+++N V++NSM++ Y K+G +  A+
Sbjct: 137 SCGGDGIYV--ETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQ 194

Query: 67  KLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEK 126
           ++F+++PQ++++SWNSMI+GY     +++A  LF +M   +  SW  MI+ +   G+++ 
Sbjct: 195 RVFDEIPQKDVISWNSMISGYARAGDMEKASSLFQQMPERNFASWNAMISGHVEFGDIDS 254

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG- 185
           AR  FD +P K + + W  M++GY+K G+ + A +L D +  K+++ +N+M++ Y +N  
Sbjct: 255 ARSFFDAMPQKNNVS-WMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSR 313

Query: 186 ---------------------EMHLAS-----------KFFEAME--------ERDVVSW 205
                                EM LAS           +F   +E        E D    
Sbjct: 314 PNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLA 373

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP----I 261
             +LD Y +   +D A++ F  + ++++V++  M+ G   NG+ ++A +LFD+M      
Sbjct: 374 TALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIF 433

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS----WTTMIDGYVRIAKLDEARRL 317
            N + +  ++ AY   G +EE  R F  M + N V     +  M+D + R  +L EA  L
Sbjct: 434 PNSITFIGLLTAYNHAGLVEEGYRCFTSMKKYNLVPSVDHYGIMVDLFGRAGRLQEALEL 493

Query: 318 LDQMP 322
           +  MP
Sbjct: 494 IKSMP 498



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 86/172 (50%), Gaps = 7/172 (4%)

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
           K  ++ SW   I    Q+    +A  ++V M + G       L+ AL ACA +A    G 
Sbjct: 66  KSPDSFSWACAIRFSTQHGQFKEAFALYVQMQRWGLCPTTFALSSALKACARIAYRMGGI 125

Query: 476 QIHHLAIKSGYV---NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYA 532
            IH    K G+    + ++V  +L+  Y K G ++ A  +F +    +V+SWNS++AGY 
Sbjct: 126 SIHGQVQKFGFSCGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYL 185

Query: 533 INGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
            +G+   A ++F+E+  +    D +++  ++S  +  G ++    LF+ M E
Sbjct: 186 KSGDLVVAQRVFDEIPQK----DVISWNSMISGYARAGDMEKASSLFQQMPE 233


>gi|297805814|ref|XP_002870791.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316627|gb|EFH47050.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 674

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 207/627 (33%), Positives = 324/627 (51%), Gaps = 86/627 (13%)

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML 209
           YA  G+   A+KL D MP  +++S+N ++  Y ++G  H A   F  M    +     + 
Sbjct: 59  YALCGHIAYARKLFDEMPQSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGI---KCVP 115

Query: 210 DGYV---------ELDDLDSAWKFFQKIPEQNVVSWVTM--------LSGYARNGRMLEA 252
           DGY          EL  +        +I    + SW  M        L+ Y   GR+  A
Sbjct: 116 DGYTYPFVAKAAGELKSISLGLVIHGRI----LRSWFGMDKYVQNALLAMYMNFGRVEMA 171

Query: 253 RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PERNPVSWTTMIDGYV 306
           R +FD M  R+V++WN MI+ Y + G + +A  +F  M      P+   +     + G++
Sbjct: 172 RNVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPVCGHL 231

Query: 307 R-------IAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
           +       + KL E +RL D++  KN     A+++ Y++  RMDEA  +F ++   DV+ 
Sbjct: 232 KGLEMGRNVHKLVEEKRLGDKIEVKN-----ALVNMYLKCGRMDEARFVFGRMERRDVIT 286

Query: 360 WNVMIKGYAQCGRMDEAINL---------------------------------------F 380
           W  MI GY + G ++ A+ L                                        
Sbjct: 287 WTCMINGYIEDGDVENALELCRLMQFEGVRPNAVTIASLVSACGDALKLNDGKCLHGWAI 346

Query: 381 RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
           RQ V  DI+   ++I+ YA+ + +D   ++F     R +T  W+A+I+G +QNE   DAL
Sbjct: 347 RQKVCSDIIIETSLISMYAKCKHIDLCFRVFSG-ASRNHTGPWSAIIAGCVQNELVRDAL 405

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500
            +F  M +E  + + +TL   L A A LA L+    IH    K+G+++ L     L+ +Y
Sbjct: 406 DLFKRMRREDVEPNIATLNSLLPAYATLADLRQTMNIHCYLTKTGFMSSLDAATGLVHVY 465

Query: 501 AKCGRIQNAELLF----KDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
           +KCG +++A  +F    +     DV+ W +LI+GY ++G+   A+++F EMV  GV P+ 
Sbjct: 466 SKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNE 525

Query: 557 VTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVK 616
           +TF   L+ACSH GLV+ GL LF  M E Y       HY C++DLL RAGRLDEA+ ++ 
Sbjct: 526 ITFTSALNACSHSGLVEEGLTLFSFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLIT 585

Query: 617 GMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDE 676
            +  +P + IWG LL AC  H+N++LG +A  KL ELEP+ T  Y LL+N++A  GRW +
Sbjct: 586 TIPFEPTSTIWGALLAACVTHENVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWKD 645

Query: 677 VEKVRVSMEGSGAQKQPGCSWIEVKNQ 703
           +EKVR  ME  G +K+PG S IE+++ 
Sbjct: 646 MEKVRNMMENVGLRKKPGHSTIEIRSN 672



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 146/575 (25%), Positives = 257/575 (44%), Gaps = 95/575 (16%)

Query: 55  AYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR------PDL 108
            YA  G +  ARKLF++MPQ +L+S+N +I  Y+ +    +A  +F +M        PD 
Sbjct: 58  TYALCGHIAYARKLFDEMPQSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDG 117

Query: 109 FSWALMITCYTRKGELEKA-----------RELFDLLPNKEDTACWNAMVAGYAKIGNYN 157
           +++  +       GEL+             R  F +     D    NA++A Y   G   
Sbjct: 118 YTYPFVAKA---AGELKSISLGLVIHGRILRSWFGM-----DKYVQNALLAMYMNFGRVE 169

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSWNLMLDGYV 213
            A+ + D M +++++SWN+M+SGY +NG M+ A   F+ M     + D  +   ML    
Sbjct: 170 MARNVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPVCG 229

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNVVAWNA 269
            L  L+      + + E+ +   +     +++ Y + GRM EAR +F +M  R+V+ W  
Sbjct: 230 HLKGLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFGRMERRDVITWTC 289

Query: 270 MIAAYVQRGQIEEAARLF----IEMPERNPVSWTTMIDGYVRIAKLDEARRL----LDQM 321
           MI  Y++ G +E A  L      E    N V+  +++       KL++ + L    + Q 
Sbjct: 290 MINGYIEDGDVENALELCRLMQFEGVRPNAVTIASLVSACGDALKLNDGKCLHGWAIRQK 349

Query: 322 PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
              +I  +T++IS Y + K +D   ++F     +    W+ +I G  Q   + +A++LF+
Sbjct: 350 VCSDIIIETSLISMYAKCKHIDLCFRVFSGASRNHTGPWSAIIAGCVQNELVRDALDLFK 409

Query: 382 QM----VNKDIVTWNTMIAGY---AQIRQ------------------------------- 403
           +M    V  +I T N+++  Y   A +RQ                               
Sbjct: 410 RMRREDVEPNIATLNSLLPAYATLADLRQTMNIHCYLTKTGFMSSLDAATGLVHVYSKCG 469

Query: 404 -MDDAVKIF---EEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
            ++ A KIF   +E  K ++ V W ALISG+  +    +AL++F+ M + G   +  T  
Sbjct: 470 TLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFT 529

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN---SLITMYAKCGRIQNAELLFKDA 516
            AL+AC+H   ++ G  +    ++  +   L   N    ++ +  + GR+  A  L    
Sbjct: 530 SALNACSHSGLVEEGLTLFSFMLE--HYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTI 587

Query: 517 --DPVDVISWNSLIAGYAINGNA----TEAIKLFE 545
             +P   I W +L+A    + N       A KLFE
Sbjct: 588 PFEPTSTI-WGALLAACVTHENVQLGEMAANKLFE 621



 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 116/452 (25%), Positives = 210/452 (46%), Gaps = 54/452 (11%)

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------- 290
           T+   YA  G +  AR+LFD+MP  +++++N +I  YV+ G   +A  +FI M       
Sbjct: 54  TLSVTYALCGHIAYARKLFDEMPQSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIKC 113

Query: 291 -PERNPVSWTTMIDGYVRIAKLDEA--RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347
            P+     +     G ++   L      R+L      +   Q A+++ Y+   R++ A  
Sbjct: 114 VPDGYTYPFVAKAAGELKSISLGLVIHGRILRSWFGMDKYVQNALLAMYMNFGRVEMARN 173

Query: 348 IFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK--------------------- 386
           +FD +   DV+ WN MI GY + G M++A+ +F  MVN+                     
Sbjct: 174 VFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPVCGHLKG 233

Query: 387 ------------------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
                              I   N ++  Y +  +MD+A  +F  M +RR+ ++W  +I+
Sbjct: 234 LEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFGRM-ERRDVITWTCMIN 292

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
           G++++    +AL++  LM  EG + +  T+A  +SAC     L  G+ +H  AI+    +
Sbjct: 293 GYIEDGDVENALELCRLMQFEGVRPNAVTIASLVSACGDALKLNDGKCLHGWAIRQKVCS 352

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           D+ +  SLI+MYAKC  I     +F  A       W+++IAG   N    +A+ LF+ M 
Sbjct: 353 DIIIETSLISMYAKCKHIDLCFRVFSGASRNHTGPWSAIIAGCVQNELVRDALDLFKRMR 412

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
            E V P+  T   +L A + +  +   + +   +T+   +  L +    ++ + S+ G L
Sbjct: 413 REDVEPNIATLNSLLPAYATLADLRQTMNIHCYLTKTGFMSSL-DAATGLVHVYSKCGTL 471

Query: 609 DEAFEMVKGMKIKPNAG---IWGTLLGACRMH 637
           + A ++  G++ K  +    +WG L+    MH
Sbjct: 472 ESAHKIFNGIQEKHKSKDVVLWGALISGYGMH 503



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 180/405 (44%), Gaps = 48/405 (11%)

Query: 273 AYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAM 332
            Y   G I  A +LF EMP+ + +S+  +I  YVR     +A  +  +M  + I      
Sbjct: 58  TYALCGHIAYARKLFDEMPQSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDG 117

Query: 333 ISGYVQNKRMDEANQIFDKIGTH----------DVVCWNVMIKGYAQCGRMDEAINLFRQ 382
            +     K   E   I   +  H          D    N ++  Y   GR++ A N+F  
Sbjct: 118 YTYPFVAKAAGELKSISLGLVIHGRILRSWFGMDKYVQNALLAMYMNFGRVEMARNVFDV 177

Query: 383 MVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI 442
           M N+D+++WNTMI+GY +   M+DA+ +F+          W                   
Sbjct: 178 MKNRDVISWNTMISGYYRNGYMNDALMMFD----------W------------------- 208

Query: 443 FVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
              M  EG   DH+T+   L  C HL  L++GR +H L  +    + + V N+L+ MY K
Sbjct: 209 ---MVNEGVDPDHATIVSMLPVCGHLKGLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLK 265

Query: 503 CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
           CGR+  A  +F   +  DVI+W  +I GY  +G+   A++L   M  EGV P+ VT   +
Sbjct: 266 CGRMDEARFVFGRMERRDVITWTCMINGYIEDGDVENALELCRLMQFEGVRPNAVTIASL 325

Query: 563 LSACSH-VGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIK 621
           +SAC   + L DG       + +    + ++E    +I + ++   +D  F +  G   +
Sbjct: 326 VSACGDALKLNDGKCLHGWAIRQKVCSDIIIE--TSLISMYAKCKHIDLCFRVFSGAS-R 382

Query: 622 PNAGIWGTLLGACRMHQNIK--LGRIAVEKLSELEPQKTSCYALL 664
            + G W  ++  C  ++ ++  L      +  ++EP   +  +LL
Sbjct: 383 NHTGPWSAIIAGCVQNELVRDALDLFKRMRREDVEPNIATLNSLL 427



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 123/505 (24%), Positives = 230/505 (45%), Gaps = 57/505 (11%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR---- 105
           N++++ Y   GRV  AR +F+ M  R+++SWN+MI+GY  N  + +A  +FD M      
Sbjct: 156 NALLAMYMNFGRVEMARNVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNEGVD 215

Query: 106 PDLFSWALMI-TCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKK 161
           PD  +   M+  C   KG LE  R +  L+  K   +     NA+V  Y K G  +EA+ 
Sbjct: 216 PDHATIVSMLPVCGHLKG-LEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARF 274

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF-----FEAMEERDVVSWNLM--LDGYVE 214
           +   M  +++++W  M++GY ++G++  A +      FE +    V   +L+      ++
Sbjct: 275 VFGRMERRDVITWTCMINGYIEDGDVENALELCRLMQFEGVRPNAVTIASLVSACGDALK 334

Query: 215 LDDLDS--AWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
           L+D      W   QK+   +++   +++S YA+   +    R+F      +   W+A+IA
Sbjct: 335 LNDGKCLHGWAIRQKVC-SDIIIETSLISMYAKCKHIDLCFRVFSGASRNHTGPWSAIIA 393

Query: 273 AYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRL---LDQMPY-K 324
             VQ   + +A  LF  M     E N  +  +++  Y  +A L +   +   L +  +  
Sbjct: 394 GCVQNELVRDALDLFKRMRREDVEPNIATLNSLLPAYATLADLRQTMNIHCYLTKTGFMS 453

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKI----GTHDVVCWNVMIKGYAQCGRMDEAINLF 380
           ++ A T ++  Y +   ++ A++IF+ I     + DVV W  +I GY   G    A+ +F
Sbjct: 454 SLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVF 513

Query: 381 RQMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN---ALISGFLQN 433
            +MV   +    +T+ + +   +    +++ + +F  M +   T++ +     I   L  
Sbjct: 514 MEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFSFMLEHYKTLARSNHYTCIVDLLGR 573

Query: 434 EFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLF-- 491
              LD  + + L+T    +   +     L+AC     +QLG             N LF  
Sbjct: 574 AGRLD--EAYNLITTIPFEPTSTIWGALLAACVTHENVQLGEMA---------ANKLFEL 622

Query: 492 ----VGNSLI--TMYAKCGRIQNAE 510
                GN ++   +YA  GR ++ E
Sbjct: 623 EPENTGNYVLLANIYAALGRWKDME 647



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 119/509 (23%), Positives = 225/509 (44%), Gaps = 86/509 (16%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ-------------- 74
           G +  A K+F +M Q + ++YN +I  Y ++G  +DA  +F +M                
Sbjct: 63  GHIAYARKLFDEMPQSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGYTYPF 122

Query: 75  -------------------RNLVSW--------NSMIAGYLHNDKVKEARELFDKMFRPD 107
                              R L SW        N+++A Y++  +V+ AR +FD M   D
Sbjct: 123 VAKAAGELKSISLGLVIHGRILRSWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMKNRD 182

Query: 108 LFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAM--VAGYAK-------IGN 155
           + SW  MI+ Y R G +  A  +FD + N+    D A   +M  V G+ K       +  
Sbjct: 183 VISWNTMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPVCGHLKGLEMGRNVHK 242

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
             E K+L D +  K     N++++ Y K G M  A   F  ME RDV++W  M++GY+E 
Sbjct: 243 LVEEKRLGDKIEVK-----NALVNMYLKCGRMDEARFVFGRMERRDVITWTCMINGYIED 297

Query: 216 DDLDSAWKF-----FQKIPEQNVVSWVTMLSGYARNGRMLEARRL----FDQMPIRNVVA 266
            D+++A +      F+ +   N V+  +++S      ++ + + L      Q    +++ 
Sbjct: 298 GDVENALELCRLMQFEGV-RPNAVTIASLVSACGDALKLNDGKCLHGWAIRQKVCSDIII 356

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK-- 324
             ++I+ Y +   I+   R+F      +   W+ +I G V+   + +A  L  +M  +  
Sbjct: 357 ETSLISMYAKCKHIDLCFRVFSGASRNHTGPWSAIIAGCVQNELVRDALDLFKRMRREDV 416

Query: 325 --NIAAQTAMISGYVQNKRMDEANQI---FDKIG-THDVVCWNVMIKGYAQCGRMDEAIN 378
             NIA   +++  Y     + +   I     K G    +     ++  Y++CG ++ A  
Sbjct: 417 EPNIATLNSLLPAYATLADLRQTMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHK 476

Query: 379 LF----RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALISGFL 431
           +F     +  +KD+V W  +I+GY       +A+++F EM   G   N +++ + ++   
Sbjct: 477 IFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACS 536

Query: 432 QNEFHLDALKIFVLMTQEGK---KADHST 457
            +    + L +F  M +  K   +++H T
Sbjct: 537 HSGLVEEGLTLFSFMLEHYKTLARSNHYT 565



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 96/435 (22%), Positives = 175/435 (40%), Gaps = 98/435 (22%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM--- 72
           + QN  +      GRVE A  +F  M  ++ +++N+MIS Y +NG +NDA  +F+ M   
Sbjct: 153 YVQNALLAMYMNFGRVEMARNVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNE 212

Query: 73  ----PQRNLVSW--------------------------------NSMIAGYLHNDKVKEA 96
                   +VS                                 N+++  YL   ++ EA
Sbjct: 213 GVDPDHATIVSMLPVCGHLKGLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEA 272

Query: 97  RELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL------PNKED-----TACWNA 145
           R +F +M R D+ +W  MI  Y   G++E A EL  L+      PN        +AC +A
Sbjct: 273 RFVFGRMERRDVITWTCMINGYIEDGDVENALELCRLMQFEGVRPNAVTIASLVSACGDA 332

Query: 146 ---------------------------MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSML 178
                                      +++ YAK  + +   ++       +   W++++
Sbjct: 333 LKLNDGKCLHGWAIRQKVCSDIIIETSLISMYAKCKHIDLCFRVFSGASRNHTGPWSAII 392

Query: 179 SGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
           +G  +N  +  A   F+ M   DV     + N +L  Y  L DL         + +   +
Sbjct: 393 AGCVQNELVRDALDLFKRMRREDVEPNIATLNSLLPAYATLADLRQTMNIHCYLTKTGFM 452

Query: 235 SWVTMLSG----YARNGRMLEARRLF----DQMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
           S +   +G    Y++ G +  A ++F    ++   ++VV W A+I+ Y   G    A ++
Sbjct: 453 SSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQV 512

Query: 287 FIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQM--PYKNIAAQ---TAMISGYV 337
           F+EM       N +++T+ ++       ++E   L   M   YK +A     T ++    
Sbjct: 513 FMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFSFMLEHYKTLARSNHYTCIVDLLG 572

Query: 338 QNKRMDEANQIFDKI 352
           +  R+DEA  +   I
Sbjct: 573 RAGRLDEAYNLITTI 587



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 168/371 (45%), Gaps = 43/371 (11%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP---- 73
           +N  +    K GR++EA  +F +M +++ +T+  MI+ Y ++G V +A +L   M     
Sbjct: 256 KNALVNMYLKCGRMDEARFVFGRMERRDVITWTCMINGYIEDGDVENALELCRLMQFEGV 315

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARE 129
           + N V+  S+++      K+ + + L     R     D+     +I+ Y +   ++    
Sbjct: 316 RPNAVTIASLVSACGDALKLNDGKCLHGWAIRQKVCSDIIIETSLISMYAKCKHIDLCFR 375

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSMLSGY---- 181
           +F    ++  T  W+A++AG  +     +A  L   M  +    NI + NS+L  Y    
Sbjct: 376 VFS-GASRNHTGPWSAIIAGCVQNELVRDALDLFKRMRREDVEPNIATLNSLLPAYATLA 434

Query: 182 ----TKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPE----QNV 233
               T N   +L    F  M   D  +   ++  Y +   L+SA K F  I E    ++V
Sbjct: 435 DLRQTMNIHCYLTKTGF--MSSLDAATG--LVHVYSKCGTLESAHKIFNGIQEKHKSKDV 490

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQM----PIRNVVAWNAMIAAYVQRGQIEEAARLFIE 289
           V W  ++SGY  +G    A ++F +M       N + + + + A    G +EE   LF  
Sbjct: 491 VLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFSF 550

Query: 290 MPERNPV-----SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ-TAMISGYV--QNKR 341
           M E          +T ++D   R  +LDEA  L+  +P++  +    A+++  V  +N +
Sbjct: 551 MLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTIWGALLAACVTHENVQ 610

Query: 342 MDE--ANQIFD 350
           + E  AN++F+
Sbjct: 611 LGEMAANKLFE 621



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 104/259 (40%), Gaps = 42/259 (16%)

Query: 467 HLAALQL---GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
           H AA Q     + +H   I  G V+   + ++L   YA CG I  A  LF +     ++S
Sbjct: 24  HYAATQSISKTKALHCHVITGGRVSGHIL-STLSVTYALCGHIAYARKLFDEMPQSSLLS 82

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGV--APDPVTFIGVLSACSHVGLVDGGLKLF-E 580
           +N +I  Y  +G   +AI +F  MV EG+   PD  T+  V  A   +  +  GL +   
Sbjct: 83  YNIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGYTYPFVAKAAGELKSISLGLVIHGR 142

Query: 581 CMTEVYAIEPLVEH-----------------------------YACMIDLLSRAGRLDEA 611
            +   + ++  V++                             +  MI    R G +++A
Sbjct: 143 ILRSWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMKNRDVISWNTMISGYYRNGYMNDA 202

Query: 612 FEMVKGM---KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE--PQKTSCYALLSN 666
             M   M    + P+     ++L  C   + +++GR  V KL E +    K      L N
Sbjct: 203 LMMFDWMVNEGVDPDHATIVSMLPVCGHLKGLEMGR-NVHKLVEEKRLGDKIEVKNALVN 261

Query: 667 MHAEAGRWDEVEKVRVSME 685
           M+ + GR DE   V   ME
Sbjct: 262 MYLKCGRMDEARFVFGRME 280


>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
 gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
          Length = 704

 Score =  339 bits (869), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 179/480 (37%), Positives = 278/480 (57%), Gaps = 11/480 (2%)

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
           +V+  NA++  Y     +++A ++F EMPER+ VSWTT++DGY R    DEA RL  +M 
Sbjct: 177 SVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMV 236

Query: 323 Y-----KNIAAQTAMISGYVQNKRMDEANQIFDKIG----THDVVCWNVMIKGYAQCGRM 373
                  N     A +S   Q   +     +   +        V   N ++  + +CG +
Sbjct: 237 VVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCV 296

Query: 374 DEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433
             A  +F  M  KD+ +W +M+  YA+   ++ A ++F++M  RRN VSW+ +I+ + Q 
Sbjct: 297 RYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDM-PRRNVVSWSCMIAAYSQL 355

Query: 434 EFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN-DLFV 492
               +A+ +F  M   G     +TL   LSACA L  L LGR I+   I S  +   + +
Sbjct: 356 NQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNL 415

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
           GN+LI M+AKCG +  A  LF +    +V+SWN++I  +A++G + EAI+LFE++  E +
Sbjct: 416 GNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENI 475

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
            PD +TF+G+L++CSH GLV  G + F+ M   Y IEP VEHYACMIDLL + G L+EAF
Sbjct: 476 VPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAF 535

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672
           E+ +GM ++ +   WG LL ACRMH N+++G    +KL EL+P  +  Y L+S ++A   
Sbjct: 536 EVARGMPMEADEAGWGALLNACRMHGNVEIGACVADKLVELDPSDSGIYVLMSQIYASKN 595

Query: 673 RWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +WD+V+ +R++M   G +K PGCS IEV+ + H FL  D     + EI + LK +   ++
Sbjct: 596 KWDQVKMLRMTMRDRGVKKNPGCSSIEVEGKFHDFLVADVSHACSEEIYSALKNIYFHLK 655



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/392 (26%), Positives = 191/392 (48%), Gaps = 53/392 (13%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
           ++ +  N+++  YA +  ++DA K+F++MP+R++VSW +++ GY       EA  LF +M
Sbjct: 176 ESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRM 235

Query: 104 -----FRPD---------------LFSWALMITCYTRKGELEKARELFDLLPNKEDTACW 143
                 RP+               L ++ +M+  Y  +G + ++  L             
Sbjct: 236 VVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLD------------ 283

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           NA+V  + K G    A+++ D M  K++ SW SM++ Y K G++  A + F+ M  R+VV
Sbjct: 284 NALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVV 343

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFDQM 259
           SW+ M+  Y +L+  + A   F+++    V     + V++LS  A+ G +   R +++  
Sbjct: 344 SWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENY 403

Query: 260 PIRNVVAW-----NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
            + N +       NA+I  + + G + EA++LF EM ERN VSW TMI  +    + +EA
Sbjct: 404 IVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEA 463

Query: 315 RRLLDQMPYKNIAAQTAMISGYV----------QNKRMDEANQIFDKIGTHDVVCWNVMI 364
            RL +Q+  +NI        G +          + +R  +  ++F +I    V  +  MI
Sbjct: 464 IRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPR-VEHYACMI 522

Query: 365 KGYAQCGRMDEAINLFRQM-VNKDIVTWNTMI 395
               + G ++EA  + R M +  D   W  ++
Sbjct: 523 DLLGKVGLLEEAFEVARGMPMEADEAGWGALL 554



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 158/318 (49%), Gaps = 21/318 (6%)

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
           E     NA+V  YA   + ++A K+ D MP +++VSW +++ GY + G    A + F  M
Sbjct: 176 ESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRM 235

Query: 198 -----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGR 248
                   + V+    +    ++  L       + + E  V   V     ++  + + G 
Sbjct: 236 VVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGC 295

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRI 308
           +  AR +FD M +++V +W +M+ AY + G +E A +LF +MP RN VSW+ MI  Y ++
Sbjct: 296 VRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQL 355

Query: 309 AKLDEARRLLDQMPYKNI----AAQTAMISGYVQNKRMDEANQIFD------KIGTHDVV 358
            + +EA  L  +M    +    A   +++S   Q   +D    I++      KIG   V 
Sbjct: 356 NQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGL-TVN 414

Query: 359 CWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRR 418
             N +I  +A+CG + EA  LF +M  +++V+WNTMI  +A   Q ++A+++FE++ K  
Sbjct: 415 LGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQL-KGE 473

Query: 419 NTVSWNALISGFLQNEFH 436
           N V       G L +  H
Sbjct: 474 NIVPDQITFLGLLASCSH 491



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 135/287 (47%), Gaps = 34/287 (11%)

Query: 383 MVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI 442
            V + ++  N ++  YA  + +DDA K+F+EM   R+ VSW  L+ G+ +     +A ++
Sbjct: 173 FVGESVLVGNALVHFYANHKSLDDAGKVFDEM-PERDVVSWTTLVDGYARAGLADEAWRL 231

Query: 443 FVLM-TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY--------------- 486
           F  M    G + +  TL  A+SA   +  L  G  +H    + G                
Sbjct: 232 FCRMVVVGGMRPNAVTLVAAVSAIGQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFG 291

Query: 487 ----------------VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
                           V D++   S++  YAKCG +++AE LFKD    +V+SW+ +IA 
Sbjct: 292 KCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAA 351

Query: 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP 590
           Y+      EA+ LF EM+  GV P   T + VLSAC+ +G +D G  ++E       I  
Sbjct: 352 YSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGL 411

Query: 591 LVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMH 637
            V     +ID+ ++ G + EA ++   M  + N   W T++ A  +H
Sbjct: 412 TVNLGNALIDMFAKCGDVGEASKLFDEMAER-NVVSWNTMIMAHAVH 457



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 164/346 (47%), Gaps = 21/346 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +   GK G V  A ++F  M  K+  ++ SM++AYAK G +  A +LF+ MP+RN+V
Sbjct: 284 NALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVV 343

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFD-- 132
           SW+ MIA Y   ++ +EA  LF +M      P   +   +++   + G L+  R +++  
Sbjct: 344 SWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGCLDLGRWIYENY 403

Query: 133 LLPNKEDTAC--WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           ++ NK        NA++  +AK G+  EA KL D M  +N+VSWN+M+  +  +G+   A
Sbjct: 404 IVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIMAHAVHGQSEEA 463

Query: 191 SKFFEAMEERDVVSWNLMLDGYVELDD----LDSAWKFFQKIP-----EQNVVSWVTMLS 241
            + FE ++  ++V   +   G +        +    ++F+++      E  V  +  M+ 
Sbjct: 464 IRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIEPRVEHYACMID 523

Query: 242 GYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS--- 297
              + G + EA  +   MP+  +   W A++ A    G +E  A +  ++ E +P     
Sbjct: 524 LLGKVGLLEEAFEVARGMPMEADEAGWGALLNACRMHGNVEIGACVADKLVELDPSDSGI 583

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMD 343
           +  M   Y    K D+ + L   M  + +       S  V+ K  D
Sbjct: 584 YVLMSQIYASKNKWDQVKMLRMTMRDRGVKKNPGCSSIEVEGKFHD 629


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  339 bits (869), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 215/670 (32%), Positives = 349/670 (52%), Gaps = 63/670 (9%)

Query: 122 GELEKARELF------DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS-KNIVSW 174
           G+L   R L       DLL    D    N+++  Y++ G    A+ + D M   ++IVSW
Sbjct: 62  GDLRLGRALHRRLLRGDLL--DRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSW 119

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVV--SWNLMLDGYVEL-DDLDSAWKFFQKIPEQ 231
            +M S   +NG    +      M E  ++  ++ L    +     +L             
Sbjct: 120 TAMASCLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVH 179

Query: 232 NVVSWVT-------MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA 284
            +  W T       ++   ARNG +  AR++FD +  + VV W  +I+ YVQ    EEA 
Sbjct: 180 KMGLWGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAV 239

Query: 285 RLFIEM------PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
            LF++       P+R  +S  +MI     +  +    +L        +A+   +  G V 
Sbjct: 240 ELFLDFLEDGFEPDRYTMS--SMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVD 297

Query: 339 -------NKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG-RMDEAINLFRQMVNKDI-- 388
                   + MD AN++F+++  +DV+ W  +I GY Q G + ++ + LF +M+N+ I  
Sbjct: 298 MYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKP 357

Query: 389 --VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW---NALISGFLQNEFHLDALKIF 443
             +T+++++   A I   D   ++   + K     +    NAL+S + ++    +A ++F
Sbjct: 358 NHITYSSILKSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVF 417

Query: 444 --------VLMTQEGK--KADH-----------STLACALSACAHLAALQLGRQIHHLAI 482
                   +    EG+    DH           ST A  +SA A +  L  G+Q+H +++
Sbjct: 418 NQLYERSMIPCITEGRDFPLDHRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSL 477

Query: 483 KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIK 542
           K+G+ +D FV NSL++MY++CG +++A   F +    +VISW S+I+G A +G A  A+ 
Sbjct: 478 KAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALS 537

Query: 543 LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLL 602
           LF +M++ GV P+ VT+I VLSACSHVGLV  G + F  M   + + P +EHYACM+DLL
Sbjct: 538 LFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLL 597

Query: 603 SRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYA 662
           +R+G + EA E +  M +K +A +W TLLGACR H NI++G I  + + ELEP+  + Y 
Sbjct: 598 ARSGIVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYV 657

Query: 663 LLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICN 722
           LLSN++A+AG WDEV ++R +M  +   K+ G SW+EV+N  H F +GD    R  +I  
Sbjct: 658 LLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYG 717

Query: 723 TLKTLAAQIR 732
            L TL  QI+
Sbjct: 718 KLDTLVRQIK 727



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 146/660 (22%), Positives = 286/660 (43%), Gaps = 81/660 (12%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMPQ-RNLVSWNSMIAGYLHNDKVKEARELFDK 102
           ++ V  NS+++ Y++ G V  AR +F+ M   R++VSW +M +    N   + +  L  +
Sbjct: 82  RDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERGSLLLIGE 141

Query: 103 MFRPDLFSWALMI-----TCYTRKGELEKARELFDLLPN----KEDTACWNAMVAGYAKI 153
           M    L   A  +      C+  +        +  L+        D A  +A++   A+ 
Sbjct: 142 MLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKMGLWGTDVAVGSALIDMLARN 201

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE-----MHLASKFFEAMEERDVVSWNLM 208
           G+   A+K+ D +  K +V W  ++S Y + GE     + L   F E   E D  + + M
Sbjct: 202 GDLASARKVFDGLIEKTVVVWTLLISRYVQ-GECAEEAVELFLDFLEDGFEPDRYTMSSM 260

Query: 209 LDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG----YARN--GRMLE-ARRLFDQMPI 261
           +    EL  +    +         + S   +  G    YA++  G+ ++ A ++F++MP 
Sbjct: 261 ISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMPK 320

Query: 262 RNVVAWNAMIAAYVQRG-QIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARR 316
            +V++W A+I+ YVQ G Q  +   LF EM       N +++++++     I+  D  R+
Sbjct: 321 NDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSCASISDHDSGRQ 380

Query: 317 LLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIG----------------THD 356
           +   +   N A+      A++S Y ++  M+EA ++F+++                  H 
Sbjct: 381 VHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIPCITEGRDFPLDHR 440

Query: 357 VVCWNV---------MIKGYAQCGRMDEAINL----FRQMVNKDIVTWNTMIAGYAQIRQ 403
           +V  +V         +I   A  G + +   L     +     D    N++++ Y++   
Sbjct: 441 IVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGY 500

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS 463
           ++DA + F E+ K RN +SW ++ISG  ++ +   AL +F  M   G K +  T    LS
Sbjct: 501 LEDACRSFNEL-KDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLS 559

Query: 464 ACAHLAALQLGRQ-IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--D 520
           AC+H+  ++ G++    +    G +  +     ++ + A+ G ++ A L F +  P+  D
Sbjct: 560 ACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEA-LEFINEMPLKAD 618

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE 580
            + W +L+     + N  E  ++  + V+E    DP  ++ + +  +  GL D   ++  
Sbjct: 619 ALVWKTLLGACRSHDN-IEVGEITAKNVVELEPRDPAPYVLLSNLYADAGLWDEVARIRS 677

Query: 581 CMTEV----------YAIEPLVEHYACMIDLLSRA----GRLDEAFEMVKGMKIKPNAGI 626
            M +             +E     +        RA    G+LD     +KGM   P+  I
Sbjct: 678 AMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVRQIKGMGYVPDTSI 737



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/419 (21%), Positives = 183/419 (43%), Gaps = 58/419 (13%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           I  L ++G +  A K+F  + +K  V +  +IS Y +     +A +LF            
Sbjct: 195 IDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELF------------ 242

Query: 82  SMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDL---LPNKE 138
                           +  +  F PD ++ + MI+  T  G +    +L  L   +    
Sbjct: 243 ---------------LDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLAS 287

Query: 139 DTACWNAMVAGYAK--IGN-YNEAKKLLDAMPSKNIVSWNSMLSGYTKNG--EMHLASKF 193
           D      +V  YAK  IG   + A K+ + MP  +++SW +++SGY ++G  E  + + F
Sbjct: 288 DACVSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALF 347

Query: 194 FEAMEER---DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT----MLSGYARN 246
            E + E    + ++++ +L     + D DS  +    + + N  S  T    ++S YA +
Sbjct: 348 GEMLNESIKPNHITYSSILKSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAES 407

Query: 247 GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYV 306
           G M EARR+F+Q+  R      +MI    +        R+       +  ++ ++I    
Sbjct: 408 GCMEEARRVFNQLYER------SMIPCITEGRDFPLDHRIVRMDVGISSSTFASLISAAA 461

Query: 307 RIAKLDEARRLLDQMPYK-----NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWN 361
            +  L + ++ L  M  K     +     +++S Y +   +++A + F+++   +V+ W 
Sbjct: 462 SVGMLTKGQQ-LHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWT 520

Query: 362 VMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
            MI G A+ G  + A++LF  M    V  + VT+  +++  + +  + +  + F  M +
Sbjct: 521 SMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQR 579



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 9/147 (6%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS  F  N  ++   + G +E+A + F+++  +N +++ SMIS  AK+G    A  LF  
Sbjct: 482 GSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHD 541

Query: 72  M----PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKG 122
           M     + N V++ ++++   H   V+E +E F  M R     P +  +A M+    R G
Sbjct: 542 MILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSG 601

Query: 123 ELEKARELFDLLPNKEDTACWNAMVAG 149
            +++A E  + +P K D   W  ++  
Sbjct: 602 IVKEALEFINEMPLKADALVWKTLLGA 628



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/308 (20%), Positives = 123/308 (39%), Gaps = 83/308 (26%)

Query: 10  NKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTV---------------------- 47
           N+ S     N  ++   +SG +EEA ++F+Q+ +++ +                      
Sbjct: 389 NQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIPCITEGRDFPLDHRIVRMDVGI 448

Query: 48  ---TYNSMISA-----------------------------------YAKNGRVNDARKLF 69
              T+ S+ISA                                   Y++ G + DA + F
Sbjct: 449 SSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSF 508

Query: 70  EQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELE 125
            ++  RN++SW SMI+G   +   + A  LF  M     +P+  ++  +++  +  G + 
Sbjct: 509 NELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVR 568

Query: 126 KARELF-------DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK-NIVSWNSM 177
           + +E F        L+P  E  AC   MV   A+ G   EA + ++ MP K + + W ++
Sbjct: 569 EGKEYFRSMQRDHGLIPRMEHYAC---MVDLLARSGIVKEALEFINEMPLKADALVWKTL 625

Query: 178 LSGYTKNGEM---HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV- 233
           L     +  +    + +K    +E RD   + L+ + Y +    D   +    + + N+ 
Sbjct: 626 LGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLN 685

Query: 234 ----VSWV 237
               +SW+
Sbjct: 686 KETGLSWM 693


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  339 bits (869), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 215/725 (29%), Positives = 373/725 (51%), Gaps = 44/725 (6%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           KSG+      +   M +   V+ ++ ++ YAK   V +A+ +F+ MP R++V+WNS+ + 
Sbjct: 158 KSGKEIHGFVVRHGMVEDVFVS-SAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSC 216

Query: 87  YLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDLLPNK---ED 139
           Y++    ++   +F +M     +PD  + + +++  +   +L+  + +          E+
Sbjct: 217 YVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVEN 276

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME- 198
               NA+V  Y       EA+ + D MP +N+++WNS+ S Y   G        F  M  
Sbjct: 277 VFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGL 336

Query: 199 ---ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG----YARNGRMLE 251
              + D ++ + +L    +L DL S         +  +V  V + +     YA    + E
Sbjct: 337 NGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVRE 396

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKL 311
           A+ +FD MP RNVV WN++ + YV  G  ++   +F EM     V      D    ++ L
Sbjct: 397 AQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREM-----VLNGVKPDLVTMLSIL 451

Query: 312 DEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
                L D    K       +I G+     M E           DV   N ++  YA+C 
Sbjct: 452 HACSDLQDLKSGK-------VIHGFAVRHGMVE-----------DVFVCNALLSLYAKCV 493

Query: 372 RMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK---RRNTVSWNALIS 428
            + EA  +F  + ++++ +WN ++  Y   ++ +  + +F +M +   + + ++W+ +I 
Sbjct: 494 CVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIG 553

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
           G ++N    +A++IF  M   G K D +T+   L AC+    L++G++IH    +     
Sbjct: 554 GCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDW 613

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPV-DVISWNSLIAGYAINGNATEAIKLFEEM 547
           DL   N+L+ MYAKCG +  +  +F D  P+ DV SWN++I    ++GN  EA+ LFE+M
Sbjct: 614 DLARTNALVDMYAKCGGLSLSRNVF-DMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKM 672

Query: 548 VMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGR 607
           ++  V PD  TF  VLSACSH  LV+ G+++F  M+  + +EP  EHY C++D+ SRAG 
Sbjct: 673 LLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGC 732

Query: 608 LDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNM 667
           L+EA+  ++ M ++P A  W   L  CR+++N++L +I+ +KL E++P  ++ Y  L N+
Sbjct: 733 LEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEIDPNGSANYVTLFNI 792

Query: 668 HAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
              A  W E  K+R  M+  G  K PGCSW  V N++HTF++GD     + +I N L  L
Sbjct: 793 LVTAKLWSEASKIRKLMKERGITKTPGCSWFHVGNRVHTFVAGDKSNMESDKIYNFLDEL 852

Query: 728 AAQIR 732
            A+I+
Sbjct: 853 FAKIK 857



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 147/619 (23%), Positives = 266/619 (42%), Gaps = 93/619 (15%)

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            D +  NA +  Y K      A+++ D + ++++V+WNS+ + Y   G        F  M
Sbjct: 73  SDVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKM 132

Query: 198 EERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG----YARNGRM 249
               V    ++ + +L G  +L DL S  +    +    +V  V + S     YA+   +
Sbjct: 133 GLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCV 192

Query: 250 LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGY 305
            EA+ +FD MP R+VV WN++ + YV  G  ++   +F EM     + +PV+ + ++   
Sbjct: 193 REAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSAC 252

Query: 306 VRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWN 361
             +  L   + +    L     +N+    A+++ Y     + EA  +FD +   +V+ WN
Sbjct: 253 SDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWN 312

Query: 362 VMIKGYAQCGRMDEAINLFRQM-------------------------------------- 383
            +   Y  CG   + +N+FR+M                                      
Sbjct: 313 SLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKH 372

Query: 384 -VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI 442
            + +D+     ++  YA    + +A  +F+ M   RN V+WN+L S ++   F    L +
Sbjct: 373 GMVEDVFVCTALVNLYANCLCVREAQTVFDLM-PHRNVVTWNSLSSCYVNCGFPQKGLNV 431

Query: 443 FVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
           F  M   G K D  T+   L AC+ L  L+ G+ IH  A++ G V D+FV N+L+++YAK
Sbjct: 432 FREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAK 491

Query: 503 CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
           C  ++ A+++F      +V SWN ++  Y  N    + + +F +M  + V  D +T+  V
Sbjct: 492 CVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVV 551

Query: 563 LSACSHVGLVDGGLKLFECM---------TEVYAIEPLVEHYAC---------------- 597
           +  C     ++  +++F  M         T +Y+I        C                
Sbjct: 552 IGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWK 611

Query: 598 ---------MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVE 648
                    ++D+ ++ G L  +  +   M IK +   W T++ A  MH N K      E
Sbjct: 612 DWDLARTNALVDMYAKCGGLSLSRNVFDMMPIK-DVFSWNTMIFANGMHGNGKEALSLFE 670

Query: 649 K--LSELEPQKTSCYALLS 665
           K  LS ++P   +   +LS
Sbjct: 671 KMLLSMVKPDSATFTCVLS 689



 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 142/297 (47%), Gaps = 34/297 (11%)

Query: 381 RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
           R  V  D+   N  I  Y + + ++ A ++F+++   R+ V+WN+L + ++   F    L
Sbjct: 68  RCGVMSDVSIGNAFIHAYGKCKCVEGARRVFDDL-VARDVVTWNSLSACYVNCGFPQQGL 126

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500
            +F  M     KA+  T++  L  C+ L  L+ G++IH   ++ G V D+FV ++ +  Y
Sbjct: 127 NVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFY 186

Query: 501 AKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
           AKC  ++ A+ +F      DV++WNSL + Y   G   + + +F EMV++GV PDPVT  
Sbjct: 187 AKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVS 246

Query: 561 GVLSACSHVGLVDGG----------------------LKLFE---CMTEVYAIEPLVEH- 594
            +LSACS +  +  G                      + L+E   C+ E  A+  L+ H 
Sbjct: 247 CILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHR 306

Query: 595 ----YACMIDLLSRAGRLDEAFEMVKGM---KIKPNAGIWGTLLGACRMHQNIKLGR 644
               +  +       G   +   + + M    +KP+     ++L AC   +++K G+
Sbjct: 307 NVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGK 363



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 161/367 (43%), Gaps = 29/367 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  N  ++   K   V EA  +F  +  +   ++N +++AY  N        +F QM +
Sbjct: 479 VFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNR 538

Query: 75  RNL----VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEK 126
             +    ++W+ +I G + N +++EA E+F KM    F+PD  +   ++   +    L  
Sbjct: 539 DEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRM 598

Query: 127 ARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSML--SGY 181
            +E+   +       D A  NA+V  YAK G  + ++ + D MP K++ SWN+M+  +G 
Sbjct: 599 GKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGM 658

Query: 182 TKNGE--MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS---- 235
             NG+  + L  K   +M + D  ++  +L        ++   + F  +   ++V     
Sbjct: 659 HGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAE 718

Query: 236 -WVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEA---ARLFIEM 290
            +  ++  Y+R G + EA     +MP+    +AW A +A       +E A   A+   E+
Sbjct: 719 HYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEI 778

Query: 291 PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRM-----DEA 345
                 ++ T+ +  V      EA ++   M  + I         +V N+       D++
Sbjct: 779 DPNGSANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCSWFHVGNRVHTFVAGDKS 838

Query: 346 NQIFDKI 352
           N   DKI
Sbjct: 839 NMESDKI 845



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 63/130 (48%)

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
           +A+KI+      G K D         ACA        +Q H  A + G ++D+ +GN+ I
Sbjct: 23  EAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFI 82

Query: 498 TMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
             Y KC  ++ A  +F D    DV++WNSL A Y   G   + + +F +M +  V  +P+
Sbjct: 83  HAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPL 142

Query: 558 TFIGVLSACS 567
           T   +L  CS
Sbjct: 143 TVSSILPGCS 152


>gi|7523419|emb|CAB86438.1| putative protein [Arabidopsis thaliana]
          Length = 1017

 Score =  339 bits (869), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 231/754 (30%), Positives = 363/754 (48%), Gaps = 76/754 (10%)

Query: 50  NSMISAYA------KNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
           NS + A+A         R     K+F++MP R   +WN+MI  Y+ N +   A  L+  M
Sbjct: 77  NSPVEAFAYVLELCGKRRAVSQEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNM 136

Query: 104 ----FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNY 156
                   L S+  ++    +  ++    EL  LL            NA+V+ YAK  + 
Sbjct: 137 RVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDL 196

Query: 157 NEAKKLLDAMPSK-NIVSWNSMLSGYTKNG----------EMHLASKFFEAMEERDVVSW 205
           + A++L D    K + V WNS+LS Y+ +G          EMH+      A     +VS 
Sbjct: 197 SAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGP---APNSYTIVSA 253

Query: 206 NLMLDG--YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRN 263
               DG  Y +L     A           +     +++ Y R G+M +A R+  QM   +
Sbjct: 254 LTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNAD 313

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARRL-- 317
           VV WN++I  YVQ    +EA   F +M     + + VS T++I    R++ L     L  
Sbjct: 314 VVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHA 373

Query: 318 --LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
             +      N+     +I  Y +        + F ++   D++ W  +I GYAQ     E
Sbjct: 374 YVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVE 433

Query: 376 AINLFRQMVNK--------------------------------------DIVTWNTMIAG 397
           A+ LFR +  K                                      D V  N ++  
Sbjct: 434 ALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTVIQNELVDV 493

Query: 398 YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHST 457
           Y + R M  A ++FE + K ++ VSW ++IS    N    +A+++F  M + G  AD   
Sbjct: 494 YGKCRNMGYATRVFESI-KGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVA 552

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD 517
           L C LSA A L+AL  GR+IH   ++ G+  +  +  +++ MYA CG +Q+A+ +F   +
Sbjct: 553 LLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIE 612

Query: 518 PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLK 577
              ++ + S+I  Y ++G    A++LF++M  E V+PD ++F+ +L ACSH GL+D G  
Sbjct: 613 RKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRG 672

Query: 578 LFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMH 637
             + M   Y +EP  EHY C++D+L RA  + EAFE VK MK +P A +W  LL ACR H
Sbjct: 673 FLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSH 732

Query: 638 QNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSW 697
              ++G IA ++L ELEP+      L+SN+ AE GRW++VEKVR  M+ SG +K PGCSW
Sbjct: 733 SEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSW 792

Query: 698 IEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           IE+  ++H F + D     + EI   L  +  ++
Sbjct: 793 IEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKL 826



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 125/296 (42%), Gaps = 47/296 (15%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           QN+ +   GK   +  A ++F  +  K+ V++ SMIS+ A NG  ++A +LF +M +  L
Sbjct: 487 QNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGL 546

Query: 78  ----VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCY-TRKGELEKARELFD 132
               V+   +++       + + RE                I CY  RKG        F 
Sbjct: 547 SADSVALLCILSAAASLSALNKGRE----------------IHCYLLRKG--------FC 582

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
           L     + +   A+V  YA  G+   AK + D +  K ++ + SM++ Y  +G    A +
Sbjct: 583 L-----EGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVE 637

Query: 193 FFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSW----VTMLSGY 243
            F+ M   +V    +S+  +L        LD    F + +  E  +  W    V ++   
Sbjct: 638 LFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDML 697

Query: 244 ARNGRMLEARRLFDQMPIRNVV-AWNAMIAA---YVQRGQIEEAARLFIEMPERNP 295
            R   ++EA      M        W A++AA   + ++   E AA+  +E+  +NP
Sbjct: 698 GRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNP 753



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 95/235 (40%), Gaps = 44/235 (18%)

Query: 489 DLFVGNSLITMYAK----CG--RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIK 542
           D+   NS +  +A     CG  R  + E +F +       +WN++I  Y  NG    A+ 
Sbjct: 72  DVSENNSPVEAFAYVLELCGKRRAVSQEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALA 131

Query: 543 LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV------YAIEPLVEHYA 596
           L+  M +EGV     +F  +L AC+ +  +  G +L   + ++      + +  LV  YA
Sbjct: 132 LYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYA 191

Query: 597 CMIDL-------------------------LSRAGRLDEAFEMVKGMKIK---PNAGIWG 628
              DL                          S +G+  E  E+ + M +    PN+    
Sbjct: 192 KNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIV 251

Query: 629 TLLGACRMHQNIKLGR---IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKV 680
           + L AC      KLG+    +V K S    +   C AL++ M+   G+  + E++
Sbjct: 252 SALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIA-MYTRCGKMPQAERI 305


>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  339 bits (869), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 181/465 (38%), Positives = 269/465 (57%), Gaps = 18/465 (3%)

Query: 278 GQIEEAARLFIEMPERNPVSWTTMIDGY----VRIAKLDEARRLL-----------DQMP 322
           G+ E A  LF  + + N   +  MI  Y    V +  +   +++L           D+  
Sbjct: 60  GETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFT 119

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
           +  +    A +  Y   K++     +F      + V  N +++ Y +C  +D+A  +F +
Sbjct: 120 FPFVVKSCAGLMCYDLGKQVH--GHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEE 177

Query: 383 MVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI 442
           M  +D V+WNT+I+G+ ++ QM  A  IFEEM + +   SW A++SG+ +   + DAL+ 
Sbjct: 178 MTERDAVSWNTLISGHVRLGQMRRARAIFEEM-QDKTIFSWTAIVSGYARIGCYADALEF 236

Query: 443 FVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
           F  M   G + D  +L   L  CA L AL+LG+ IH  A K+G++ ++ V N+LI MYAK
Sbjct: 237 FRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAK 296

Query: 503 CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
           CG I     LF      DVISW+++I G A +G A EAI+LF+EM    + P  +TF+G+
Sbjct: 297 CGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGL 356

Query: 563 LSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKP 622
           L+AC+H GL++ GL+ FE M   Y IEP VEHY C+++LL  +GRLD+A E+VK M  KP
Sbjct: 357 LTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKP 416

Query: 623 NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRV 682
           ++ IWG+LL +CR H N+K+  IA+E L ELEP  T  Y LLSN++A+ G+WD V ++R 
Sbjct: 417 DSPIWGSLLSSCRSHGNLKIAVIAMEHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRK 476

Query: 683 SMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
            M     +K PGCS IEV N +  F SGD  +  +  IC  LK L
Sbjct: 477 LMRSKSMKKTPGCSSIEVDNMVQEFASGDDSKPFSKAICRVLKLL 521



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 145/284 (51%), Gaps = 19/284 (6%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           +F    + NTV  NS++  Y K   ++DA ++FE+M +R+ VSWN++I+G++   +++ A
Sbjct: 143 VFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRA 202

Query: 97  RELFDKMFRPDLFSWALMITCYTRKGELEKARELF---DLLPNKEDTACWNAMVAGYAKI 153
           R +F++M    +FSW  +++ Y R G    A E F    ++  + D     +++   A++
Sbjct: 203 RAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQL 262

Query: 154 GNYNEAKKLL----DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML 209
           G     K +      A   +NI   N+++  Y K G +    + F+ M+ERDV+SW+ M+
Sbjct: 263 GALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMI 322

Query: 210 DGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPI---- 261
            G         A + FQ++     E +++++V +L+  A  G + E  R F+ M      
Sbjct: 323 VGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNI 382

Query: 262 -RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS--WTTMI 302
              V  +  ++      G++++A  L  +MP R P S  W +++
Sbjct: 383 EPGVEHYGCLVNLLGLSGRLDQALELVKKMP-RKPDSPIWGSLL 425



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 153/338 (45%), Gaps = 47/338 (13%)

Query: 222 WKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIE 281
           +KF QK    N V   +++  Y +   + +A R+F++M  R+ V+WN +I+ +V+ GQ+ 
Sbjct: 144 FKFGQK---SNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMR 200

Query: 282 EAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYV 337
            A  +F EM ++   SWT ++ GY RI    +A     +M    I        +++    
Sbjct: 201 RARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCA 260

Query: 338 QNKRMDEANQIF---DKIGTHDVVC-WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNT 393
           Q   ++    I    DK G    +C  N +I+ YA+CG +D+   LF QM  +D+++W+T
Sbjct: 261 QLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWST 320

Query: 394 MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA 453
           MI G A   +  +A+++F+EM K +   S                               
Sbjct: 321 MIVGLANHGRAREAIELFQEMQKAKIEPSI------------------------------ 350

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN--SLITMYAKCGRIQNA-E 510
              T    L+ACAH   L  G + +  ++K  Y  +  V +   L+ +    GR+  A E
Sbjct: 351 --ITFVGLLTACAHAGLLNEGLR-YFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALE 407

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           L+ K     D   W SL++    +GN   A+   E ++
Sbjct: 408 LVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLL 445



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/352 (21%), Positives = 167/352 (47%), Gaps = 21/352 (5%)

Query: 8   IGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARK 67
            G K + V  +N  +    K   +++A ++F +M++++ V++N++IS + + G++  AR 
Sbjct: 146 FGQKSNTVV-ENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARA 204

Query: 68  LFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGE 123
           +FE+M  + + SW ++++GY       +A E F +M      PD  S   ++    + G 
Sbjct: 205 IFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGA 264

Query: 124 LEKARELF---DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG 180
           LE  + +    D      +    NA++  YAK G+ ++ ++L D M  ++++SW++M+ G
Sbjct: 265 LELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVG 324

Query: 181 YTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-----EQ 231
              +G    A + F+ M+    E  ++++  +L        L+   ++F+ +      E 
Sbjct: 325 LANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEP 384

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLFIEM 290
            V  +  +++    +GR+ +A  L  +MP + +   W +++++    G ++ A      +
Sbjct: 385 GVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHL 444

Query: 291 PERNPV---SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQN 339
            E  P    ++  + + Y  + K D   R+   M  K++       S  V N
Sbjct: 445 LELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDN 496



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 158/370 (42%), Gaps = 62/370 (16%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM--- 72
           F   K +      G  E A  +F  ++  N   YN+MI AY  N     A  +++QM   
Sbjct: 47  FLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGN 106

Query: 73  --------PQR---------------------------------NLVSWNSMIAGYLHND 91
                   P +                                 N V  NS++  Y+  D
Sbjct: 107 PHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCD 166

Query: 92  KVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYA 151
            + +A  +F++M   D  SW  +I+ + R G++ +AR +F+ + +K   + W A+V+GYA
Sbjct: 167 SLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFS-WTAIVSGYA 225

Query: 152 KIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASKFFEAMEE----RDVV 203
           +IG Y +A +    M    I    +S  S+L    + G + L        ++    R++ 
Sbjct: 226 RIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNIC 285

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI-- 261
             N +++ Y +   +D   + F ++ E++V+SW TM+ G A +GR  EA  LF +M    
Sbjct: 286 VCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAK 345

Query: 262 --RNVVAWNAMIAAYVQRGQIEEAARLFIEMP-----ERNPVSWTTMIDGYVRIAKLDEA 314
              +++ +  ++ A    G + E  R F  M      E     +  +++      +LD+A
Sbjct: 346 IEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQA 405

Query: 315 RRLLDQMPYK 324
             L+ +MP K
Sbjct: 406 LELVKKMPRK 415



 Score = 39.3 bits (90), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 63/294 (21%), Positives = 120/294 (40%), Gaps = 43/294 (14%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD-ADPVD 520
           L  C ++  L   ++IH   +K       F+   ++ +    G  + A LLFK  ADP +
Sbjct: 21  LKDCPNIVEL---KKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADP-N 76

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMV-----MEGVAPDPVTFIGVLSACSHVGLVDGG 575
              +N++I  Y  N     AI ++++M+        + PD  TF  V+ +C+ +   D G
Sbjct: 77  AFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLG 136

Query: 576 LKL------FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629
            ++      F   +       LVE Y        +   LD+A  + + M  + +A  W T
Sbjct: 137 KQVHGHVFKFGQKSNTVVENSLVEMYV-------KCDSLDDAHRVFEEMTER-DAVSWNT 188

Query: 630 LLGACRMHQNIKLG--RIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGS 687
           L+       +++LG  R A     E++ +    +  + + +A  G + +  +    M+  
Sbjct: 189 LISG-----HVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMV 243

Query: 688 GAQKQ--------PGCSW---IEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQ 730
           G +          P C+    +E+   IH + +      R   +CN L  + A+
Sbjct: 244 GIEPDEISLVSVLPDCAQLGALELGKWIHIY-ADKAGFLRNICVCNALIEMYAK 296


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 216/673 (32%), Positives = 346/673 (51%), Gaps = 63/673 (9%)

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------PSKNIVSWNSM 177
           L  A+E+F+   +      +N+++ GYA  G   EA  L   M      P K    +   
Sbjct: 82  LSFAKEVFENGESYGTCFMYNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLS 141

Query: 178 LSGYT--KNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
           +   +  K   + +     +    +D+   N ++  Y E  +LD A K F ++ E+NVVS
Sbjct: 142 VCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVS 201

Query: 236 WVTMLSGYARNGRMLEARRLF-----DQMPIRNVVAWNAMIAAYVQRGQIEEAARL--FI 288
           W +M+ GYAR     +A  LF     D+  I N V    +I+A  +   +E   ++  FI
Sbjct: 202 WTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFI 261

Query: 289 EMP--ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEAN 346
                E N +  + ++D Y++   +D A+RL D+    N+    AM S YV+     EA 
Sbjct: 262 RDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEAL 321

Query: 347 QIF----------DKIG------------------------------THDVVCWNVMIKG 366
            +           D+I                               + D +C N +I  
Sbjct: 322 GVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNIC-NALIDM 380

Query: 367 YAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNAL 426
           Y +C R D A  +F +M NK +VTWN+++AGY +  ++D A + F  M   +N VSWN +
Sbjct: 381 YMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTM-PEKNIVSWNTI 439

Query: 427 ISGFLQNEFHLDALKIFVLM-TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485
           IS  +Q   + +A+++F  M +QE    D  T+    SAC HL AL L + I++   K+ 
Sbjct: 440 ISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNR 499

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
              D+ +G +L+ M+++CG  ++A  +F      DV +W + I   A+ GN   AI+LF 
Sbjct: 500 IQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFN 559

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRA 605
           EM+ +G+ PD V FIG L+AC H GLV  G ++F  M +++ + P   HY CM+DLL RA
Sbjct: 560 EMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRA 619

Query: 606 GRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLS 665
           G L+EA +++K M  +PN  IW +LL ACR+  N+++   A EK+  L P++T  Y LLS
Sbjct: 620 GLLEEALQLIKDMPTEPNDVIWNSLLAACRVQGNVEMAAFAAEKIQVLAPERTGSYVLLS 679

Query: 666 NMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD---PKQCRTAEICN 722
           N++A AGRW+++ KVR+SM+  G +K PG S I+++ + H F SGD   P+  +   + +
Sbjct: 680 NVYASAGRWNDMAKVRLSMKEKGLRKPPGTSVIQIRGKTHEFTSGDESHPEMRKIEAMLD 739

Query: 723 TLKTLAAQIRNTP 735
            L   A+ + + P
Sbjct: 740 ELSQRASDLGHVP 752



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 141/538 (26%), Positives = 241/538 (44%), Gaps = 87/538 (16%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
           K+    NS++  YA+ G ++ ARK+F++M +RN+VSW SMI GY   +  K+A +LF +M
Sbjct: 166 KDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRM 225

Query: 104 FR-----PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGN 155
            R     P+  +   +I+   +  +LE   +++D + +   + +    +A+V  Y K   
Sbjct: 226 VRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNA 285

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
            + AK+L D   + N+   N+M S Y + G           + +  +   NLM+D  +  
Sbjct: 286 IDIAKRLFDEYGASNLDLCNAMASNYVRQG-----------LTKEALGVLNLMMDSGIRP 334

Query: 216 DDLDSAWKFFQKIPEQNVVSWVTMLSGYA-RNG-------------------RMLEARRL 255
           D + S         +   + W     GY  RNG                   R   A R+
Sbjct: 335 DRI-SMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRI 393

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR 315
           FD+M  + VV WN+++A Y++ G+++ A   F  MPE+N VSW T+I   V+    +EA 
Sbjct: 394 FDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAI 453

Query: 316 RLLDQMPYK---NIAAQTAM--ISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKG 366
            +   M  +   N+   T M   S       +D A  I+  I  +    DV     ++  
Sbjct: 454 EVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLVDM 513

Query: 367 YAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNAL 426
           +++CG  + A+++F  + N+D+  W   I   A    ++ A+++F E             
Sbjct: 514 FSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNE------------- 560

Query: 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
                              M ++G K D      AL+AC H   +Q G++I +   K   
Sbjct: 561 -------------------MIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLHG 601

Query: 487 VN--DLFVGNSLITMYAKCGRIQNAELLFKD--ADPVDVISWNSLIAGYAINGNATEA 540
           V+  D+  G  ++ +  + G ++ A  L KD   +P DVI WNSL+A   + GN   A
Sbjct: 602 VSPEDVHYG-CMVDLLGRAGLLEEALQLIKDMPTEPNDVI-WNSLLAACRVQGNVEMA 657



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 110/482 (22%), Positives = 217/482 (45%), Gaps = 69/482 (14%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F QN  +    + G ++ A K+F +MS++N V++ SMI  YA+     DA  LF +M +
Sbjct: 168 LFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRMVR 227

Query: 75  RNLVSWNS-----MIAGYLHNDKVKEARELFDKMFRPDLFSWALMITC----YTRKGELE 125
              V  NS     +I+     + ++   +++D +    +    LMI+     Y +   ++
Sbjct: 228 DEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAID 287

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------PS----------- 168
            A+ LFD         C NAM + Y + G   EA  +L+ M      P            
Sbjct: 288 IAKRLFDEYGASNLDLC-NAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSC 346

Query: 169 ---KNIV---------------SW----NSMLSGYTKNGEMHLASKFFEAMEERDVVSWN 206
              +NI+               SW    N+++  Y K      A + F+ M  + VV+WN
Sbjct: 347 SQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWN 406

Query: 207 LMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA 266
            ++ GY+E  ++D+AW+ F  +PE+N+VSW T++S   +     EA  +F  M  +  V 
Sbjct: 407 SIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVN 466

Query: 267 WN-----AMIAAYVQRGQIEEAARLFIEMPERNPVSW-----TTMIDGYVRIAKLDEARR 316
            +     ++ +A    G ++ A  ++  + E+N +       TT++D + R    + A  
Sbjct: 467 VDGVTMMSIASACGHLGALDLAKWIYYYI-EKNRIQLDVRLGTTLVDMFSRCGDPESAMS 525

Query: 317 LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGR 372
           + + +  ++++A TA I        ++ A ++F+++       D V +   +      G 
Sbjct: 526 IFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGVVFIGALTACCHGGL 585

Query: 373 MDEAINLFRQM-----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
           + +   +F  M     V+ + V +  M+    +   +++A+++ ++M    N V WN+L+
Sbjct: 586 VQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEEALQLIKDMPTEPNDVIWNSLL 645

Query: 428 SG 429
           + 
Sbjct: 646 AA 647



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 112/219 (51%), Gaps = 8/219 (3%)

Query: 370 CGRMDEA----INLFRQMVNKDIVTWNTMIAGYAQI---RQMDDAVKIFEEMGKRRNTVS 422
           C  +DE     ++L +Q ++ D+     ++A   ++     +  A ++FE          
Sbjct: 41  CKTIDELKMFHLSLTKQGLDDDVSAITKLVARSCELGTRESLSFAKEVFENGESYGTCFM 100

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482
           +N+LI G+  +    +A+ +F+ M   G   D  T    LS CA       G QIH L I
Sbjct: 101 YNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLII 160

Query: 483 KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIK 542
           K  Y  DLFV NSL+  YA+CG +  A  +F +    +V+SW S+I GYA    A +A+ 
Sbjct: 161 KMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVD 220

Query: 543 LFEEMVM-EGVAPDPVTFIGVLSACSHVGLVDGGLKLFE 580
           LF  MV  E V P+ VT + V+SAC+ +  ++ G K+++
Sbjct: 221 LFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYD 259



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 139/304 (45%), Gaps = 36/304 (11%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I    K  R + A +IF +MS K  VT+NS+++ Y +NG V+ A + F  MP++N+V
Sbjct: 375 NALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIV 434

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFDL 133
           SWN++I+  +  +  +EA E+F  M        D  +   + +     G L+ A+ ++  
Sbjct: 435 SWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYY 494

Query: 134 LPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           +       D      +V  +++ G+   A  + +++ ++++ +W + +      G +  A
Sbjct: 495 IEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERA 554

Query: 191 SKFFEAMEERDVVSWNLMLDGYVELDDL----------------DSAWKFFQKIPEQNVV 234
            + F  M E+      L  DG V +  L                +S  K     PE   V
Sbjct: 555 IELFNEMIEQ-----GLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPED--V 607

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAA----RLFIE 289
            +  M+    R G + EA +L   MP   N V WN+++AA   +G +E AA    ++ + 
Sbjct: 608 HYGCMVDLLGRAGLLEEALQLIKDMPTEPNDVIWNSLLAACRVQGNVEMAAFAAEKIQVL 667

Query: 290 MPER 293
            PER
Sbjct: 668 APER 671


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 174/470 (37%), Positives = 272/470 (57%), Gaps = 13/470 (2%)

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PERNPVSWTTMIDGY 305
           A  +F ++P  N   WN +I AY      E A  +F +M      P++   ++T  +   
Sbjct: 61  AHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDK--YTFTFALKSC 118

Query: 306 VRIAKLDEARRLLDQMPYKNIA----AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWN 361
              + ++E R++   +    +      Q  +I  Y     +++A  + D++   DVV WN
Sbjct: 119 GSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWN 178

Query: 362 VMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
            ++  YA+ G M+ A +LF +M  +++ +WN MI+GY  +  +++A ++F E    +N V
Sbjct: 179 ALLSAYAERGLMELACHLFDEMTERNVESWNFMISGYVGVGLLEEARRVFGET-PVKNVV 237

Query: 422 SWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLA 481
           SWNA+I+G+       + L +F  M   G K D+ TL   LSACAH+ AL  G  +H   
Sbjct: 238 SWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYI 297

Query: 482 IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
            K+G   D FV  +L+ MY+KCG I+ A  +F      D+ +WNS+I+G + +G+   A+
Sbjct: 298 DKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHAL 357

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601
           ++F EM++EG  P+ VTF+ VLSACS  GL+D G ++F  M  V+ I+P +EHY CM+DL
Sbjct: 358 QIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDL 417

Query: 602 LSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCY 661
           L R G L+EA E+V+ M  K  + +W +LLGACR H N++L     +KL EL PQ++S +
Sbjct: 418 LGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQESSSF 477

Query: 662 ALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD 711
             LSNM+A  GRW +V +VR  M   G +K PGCS IEV   ++ FL+G+
Sbjct: 478 VQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIEVDGTVYEFLAGE 527



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 205/413 (49%), Gaps = 31/413 (7%)

Query: 44  KNTVTYNSMISAYAKNGR---VNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF 100
            +T   + +I++ + N     +  A  +F ++P  N   WN++I  Y ++   + A  +F
Sbjct: 37  HSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIF 96

Query: 101 DKMFR----PDLFSWALMI-TCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAK 152
            +M      PD +++   + +C +  G +E+ R++   +      +D    N ++  YA 
Sbjct: 97  HQMLHASVLPDKYTFTFALKSCGSFSG-VEEGRQIHGHVLKTGLGDDLFIQNTLIHLYAS 155

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY 212
            G   +A+ LLD M  +++VSWN++LS Y + G M LA   F+ M ER+V SWN M+ GY
Sbjct: 156 CGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDEMTERNVESWNFMISGY 215

Query: 213 VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN---- 268
           V +  L+ A + F + P +NVVSW  M++GY+  GR  E   LF+ M    V   N    
Sbjct: 216 VGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLV 275

Query: 269 AMIAAYVQRGQIEEAARLFIEMPERNPVSW-----TTMIDGYVRIAKLDEARRLLDQMPY 323
           ++++A    G + +   +   + ++N +S      T ++D Y +   +++A  + +    
Sbjct: 276 SVLSACAHVGALSQGEWVHAYI-DKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLR 334

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV----VCWNVMIKGYAQCGRMDEAINL 379
           K+I+   ++ISG   +     A QIF ++         V +  ++   ++ G +DE   +
Sbjct: 335 KDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREM 394

Query: 380 FRQMVN-----KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
           F  MV+       I  +  M+    ++  +++A ++ ++M ++  +V W +L+
Sbjct: 395 FNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLL 447



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 174/337 (51%), Gaps = 25/337 (7%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G  +F QN  I      G +E+A  +  +M +++ V++N+++SAYA+ G +  A  LF++
Sbjct: 140 GDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDE 199

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           M +RN+ SWN MI+GY+    ++EAR +F +    ++ SW  MIT Y+  G   +   LF
Sbjct: 200 MTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLF 259

Query: 132 DLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG-----YTK 183
           + + +   K D     ++++  A +G  ++  + + A   KN +S +  ++      Y+K
Sbjct: 260 EDMQHAGVKPDNCTLVSVLSACAHVGALSQG-EWVHAYIDKNGISIDGFVATALVDMYSK 318

Query: 184 NGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTM 239
            G +  A + F +   +D+ +WN ++ G         A + F ++     + N V++V +
Sbjct: 319 CGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCV 378

Query: 240 LSGYARNGRMLEARRLFDQM----PIRNVVA-WNAMIAAYVQRGQIEEAARLFIEMPERN 294
           LS  +R G + E R +F+ M     I+  +  +  M+    + G +EEA  L  +MP++ 
Sbjct: 379 LSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKE 438

Query: 295 -PVSWTTMI-----DGYVRIAKLDEARRLLDQMPYKN 325
             V W +++      G V +A+   A++LL+  P ++
Sbjct: 439 ASVVWESLLGACRNHGNVELAE-RVAQKLLELSPQES 474


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 192/542 (35%), Positives = 297/542 (54%), Gaps = 18/542 (3%)

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSG 242
           +H A   F  +E   +V WN M+ G  + D    A   + ++  Q +    ++ + +   
Sbjct: 66  LHKAHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKA 125

Query: 243 YARNGRMLEARRLFDQMPIRNVVAW----NAMIAAYVQRGQIEEAARLFIEMPERNPVSW 298
            AR   ++  R++          ++    NA+I  Y   GQ+  A ++F  M +R+ VSW
Sbjct: 126 CARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSW 185

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ-TAMISGYVQNKRMDE---ANQIFDKIGT 354
            T+I GY +  K  E  RL D M   NI A    M+   +    + +   A+ +   I  
Sbjct: 186 NTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKE 245

Query: 355 H----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKI 410
           +    DV   N +I  Y +    + A  +F +M  ++IV+WN ++ G+A++  +  A K+
Sbjct: 246 NNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKL 305

Query: 411 FEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAA 470
           F+ M KR + +SW ++I+G+ Q     DA+K+F  M     K D  T+A  LSACAHL  
Sbjct: 306 FDNMPKR-DVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGK 364

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
           L +G  +HH   + G   D++VGNSLI MY KCG ++ A  +F      D +SW S+I+G
Sbjct: 365 LDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISG 424

Query: 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP 590
            A+NG A  A+ LF +M+ EGV P   TF+G+L AC+H GLV+ GL+ FE M  V+ + P
Sbjct: 425 LAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVP 484

Query: 591 LVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL 650
            ++HY C++DLLSR+G +D+A+E +K M I P+  +W  LL AC++H N+ L  IA ++L
Sbjct: 485 AMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRL 544

Query: 651 SELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSG 710
            EL+P  +  Y LLSN +A   RWD+  K+R  ME S  QK  G S IEV   +  + S 
Sbjct: 545 LELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSSSIEVDGMVSNY-SQ 603

Query: 711 DP 712
           +P
Sbjct: 604 EP 605



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 138/597 (23%), Positives = 250/597 (41%), Gaps = 119/597 (19%)

Query: 50  NSMISAYA-KNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----- 103
           + +I +Y+  +  ++ A  +F Q+    LV WN MI G   +D   EA  ++ +M     
Sbjct: 53  SDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGI 112

Query: 104 ----------------------------------FRPDLFSWALMITCYTRKGELEKARE 129
                                             F   LF    +I  Y   G+L  A++
Sbjct: 113 TGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQK 172

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNG 185
           +FD + ++ D   WN ++ GY++   Y E  +L DAM + NI    V+   ++   +  G
Sbjct: 173 MFDGMLDR-DLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLG 231

Query: 186 EMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
           +   A    + ++E     DV   N ++D Y      + A   F ++ E+N+VSW  ++ 
Sbjct: 232 DWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVM 291

Query: 242 GYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PERNP 295
           G+A+ G +  AR+LFD MP R+V++W +MI  Y Q  Q  +A +LF EM      P++  
Sbjct: 292 GHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDK-- 349

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
           V+  +++     + KLD    +   +    + A                           
Sbjct: 350 VTVASVLSACAHLGKLDVGWAVHHYIRRHGVQA--------------------------- 382

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMG 415
           D+   N +I  Y +CG +++A+ +F +M +KD V+W ++I+G A                
Sbjct: 383 DIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLA---------------- 426

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
                      ++GF  +     AL +F  M +EG +  H T    L ACAH   +  G 
Sbjct: 427 -----------VNGFANS-----ALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGL 470

Query: 476 Q-IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV-DVISWNSLIAGYAI 533
           +    +    G V  +     ++ + ++ G I  A    K    V DV+ W  L++   +
Sbjct: 471 EYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKL 530

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP 590
           +GN   A ++  + ++E    D   ++ + +  + V   D  +K+ E M +    +P
Sbjct: 531 HGNVVLA-EIATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKP 586



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 79/297 (26%), Positives = 143/297 (48%), Gaps = 23/297 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           SY+F  N  I      G++  A K+F  M  ++ V++N++I  Y++  +  +  +LF+ M
Sbjct: 149 SYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAM 208

Query: 73  PQRNL----VSWNSMIAGYLH-------NDKVKEARELFDKMFRPDLFSWALMITCYTRK 121
              N+    V+   +I    H       +  VK  +E        D++    +I  Y R+
Sbjct: 209 TAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKE---NNLEIDVYLGNTLIDMYGRR 265

Query: 122 GELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
              E A+ +FD +  + +   WNA+V G+AK+GN   A+KL D MP ++++SW SM++GY
Sbjct: 266 SLAELAQGVFDRM-RERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGY 324

Query: 182 TKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV 237
           ++  +   A K F+ M     + D V+   +L     L  LD  W     I    V + +
Sbjct: 325 SQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADI 384

Query: 238 ----TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
               +++  Y + G + +A  +F +M  ++ V+W ++I+     G    A  LF +M
Sbjct: 385 YVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQM 441



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 166/354 (46%), Gaps = 32/354 (9%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V+  N  I   G+    E A  +F +M ++N V++N+++  +AK G +  ARKLF+ MP+
Sbjct: 252 VYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPK 311

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKAREL 130
           R+++SW SMI GY    +  +A +LF +M     +PD  + A +++     G+L+    +
Sbjct: 312 RDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAV 371

Query: 131 FDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
              +     + D    N+++  Y K G   +A ++   M  K+ VSW S++SG   NG  
Sbjct: 372 HHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFA 431

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYV----ELDDLDSAWKFFQKIPEQNVVSWVTMLSGY 243
           + A   F  M    V   +    G +        ++   ++F+ +  ++V   V  +  Y
Sbjct: 432 NSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESM--ESVHGLVPAMKHY 489

Query: 244 -------ARNGRMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQI---EEAARLFIEMPE 292
                  +R+G + +A     +MPI  +VV W  +++A    G +   E A +  +E+  
Sbjct: 490 GCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLELDP 549

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT--------AMISGYVQ 338
            +  ++  + + Y  + + D+A ++ + M   ++   +         M+S Y Q
Sbjct: 550 CDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSSSIEVDGMVSNYSQ 603


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 190/556 (34%), Positives = 305/556 (54%), Gaps = 18/556 (3%)

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV-TMLSGYA 244
           E HL ++F   +   +     L++  Y  +     A   F   P    +S V +++ G  
Sbjct: 86  ETHLCNRFLRELSRSEEPEKTLLV--YERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLE 143

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDG 304
            +G  L A+  FD  P         ++  Y   G+I EA  +F +M  R+ V+W+ MIDG
Sbjct: 144 IHG--LAAKLGFDSDPF----VQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDG 197

Query: 305 YVRIAKLDEARRLLDQMPYKNIAAQTAMISGYV----QNKRMDEANQIFDKIGTHDVVC- 359
           Y +    ++A  L ++M   N+     M+S  +    +   +     I D I  +++V  
Sbjct: 198 YCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVD 257

Query: 360 ---WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
               + ++  YA CG MD A+NLF +M  K++V    M+ GY+++ Q+++A  +F +M K
Sbjct: 258 PHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVK 317

Query: 417 RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ 476
           + + V W+A+ISG+ +++   +AL +F  M   G K D  T+   ++ACAHL AL   + 
Sbjct: 318 K-DLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKW 376

Query: 477 IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGN 536
           IH    K+G+   L + N+LI MYAKCG ++ A  +F      +VISW  +I+ +A++G+
Sbjct: 377 IHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGD 436

Query: 537 ATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYA 596
           A  A++ F +M  E + P+ +TF+GVL ACSH GLV+ G K+F  M   + I P   HY 
Sbjct: 437 AGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYG 496

Query: 597 CMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQ 656
           CM+DL  RA  L EA E+V+ M + PN  IWG+L+ ACR+H  I+LG  A ++L EL+P 
Sbjct: 497 CMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPD 556

Query: 657 KTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCR 716
               +  LSN++A+A RW++V +VR  M+  G  K+ GCS  E+ N+IH FL  D     
Sbjct: 557 HDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKH 616

Query: 717 TAEICNTLKTLAAQIR 732
             EI   L  + ++++
Sbjct: 617 ADEIYEKLYEVVSKLK 632



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 186/369 (50%), Gaps = 39/369 (10%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           Q+  +T     G ++ A+ +F +M+ KN V   +M++ Y+K G++ +AR +F QM +++L
Sbjct: 261 QSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDL 320

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDL 133
           V W++MI+GY  +D  +EA  LF++M     +PD  +   +IT     G L++A+ +  L
Sbjct: 321 VCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWI-HL 379

Query: 134 LPNKED----TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
             +K          NA++  YAK G+   A+++ D MP KN++SW  M+S +  +G+   
Sbjct: 380 FVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGS 439

Query: 190 ASKFFEAMEERDV---------VSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSW 236
           A +FF  ME+ ++         V +     G VE    +    F+  I E N+    V +
Sbjct: 440 ALRFFHQMEDENIEPNGITFVGVLYACSHAGLVE----EGRKIFYSMINEHNITPKHVHY 495

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEE---AARLFIEMPE 292
             M+  + R   + EA  L + MP+  NV+ W +++AA    G+IE    AA+  +E+  
Sbjct: 496 GCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDP 555

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA---------MISGYVQNKRMD 343
            +  +   + + Y +  + ++  ++   M +K I+ +           +    V ++   
Sbjct: 556 DHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHK 615

Query: 344 EANQIFDKI 352
            A++I++K+
Sbjct: 616 HADEIYEKL 624



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 168/364 (46%), Gaps = 59/364 (16%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F Q   +      GR+ EA  +F +M  ++ VT++ MI  Y ++G  NDA  LFE+M   
Sbjct: 158 FVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNY 217

Query: 76  NL-------------------VSWNSMIAGYLHNDKV--------------------KEA 96
           N+                   +S+  MI  ++  + +                      A
Sbjct: 218 NVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLA 277

Query: 97  RELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNY 156
             LF+KM   +L +   M+T Y++ G++E AR +F+ +  K+D  CW+AM++GYA+  + 
Sbjct: 278 LNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMV-KKDLVCWSAMISGYAESDSP 336

Query: 157 NEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW-----NL 207
            EA  L + M S  I    V+  S+++     G +  A K+     +++         N 
Sbjct: 337 QEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQA-KWIHLFVDKNGFGGALPINNA 395

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV--- 264
           +++ Y +   L+ A + F K+P +NV+SW  M+S +A +G    A R F QM   N+   
Sbjct: 396 LIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPN 455

Query: 265 -VAWNAMIAAYVQRGQIEEAARLFIEM-PERN----PVSWTTMIDGYVRIAKLDEARRLL 318
            + +  ++ A    G +EE  ++F  M  E N     V +  M+D + R   L EA  L+
Sbjct: 456 GITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELV 515

Query: 319 DQMP 322
           + MP
Sbjct: 516 EAMP 519


>gi|115445617|ref|NP_001046588.1| Os02g0290000 [Oryza sativa Japonica Group]
 gi|47847947|dbj|BAD21737.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536119|dbj|BAF08502.1| Os02g0290000 [Oryza sativa Japonica Group]
          Length = 930

 Score =  338 bits (868), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 225/785 (28%), Positives = 392/785 (49%), Gaps = 83/785 (10%)

Query: 26  GKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLF---------EQMPQRN 76
           G+ G + +A  +F +MS  + V  N +I+A ++ G  ND   LF         E MP   
Sbjct: 140 GRIGSLADAHTVFDEMSCSDAVCRNILITASSRAGLYNDVFHLFRAMLASGVDESMPTAV 199

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKG---ELEKARE 129
            V+    +   L    ++  R +   + +     D  S   +++ Y + G    ++ A  
Sbjct: 200 TVAVVLPVCAKLR--VLRAGRSIHGYVIKTGLEFDTLSGNALVSMYAKCGGSIAMDDAHL 257

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEA----------------KKLLDAMPSKNIVS 173
            F  +  K D   WN+++AGY++ G + EA                  L + +P  ++V 
Sbjct: 258 AFSTICCK-DVVSWNSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPFCSLVE 316

Query: 174 W------------------------NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML 209
           +                        N++++ Y+K  EM      F + +  D+V+WN ++
Sbjct: 317 YGRHYGKEIHGFVVRHGLEMDISVSNALMAHYSKVCEMRAVESIFRSSKMGDIVTWNTVI 376

Query: 210 DGYVELDDLDSAWKFFQKI------PEQNVVSWVTMLSGYARNGRMLEARRLFDQM---P 260
            GYV       A K FQ +      P+   VS +++L+  A+ G +    R+   +   P
Sbjct: 377 AGYVMNRYPSRALKLFQGLLFAGMAPDS--VSLISLLTACAQVGNLRVGIRVHGYIFRHP 434

Query: 261 --IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAK-LDEARRL 317
             ++     NA+++ Y Q  + + A R FI +  ++ VSW  ++         +++  RL
Sbjct: 435 ELLQETSLMNALVSFYSQCDRFDAAFRSFITIQNKDSVSWNAILSACANSEHHIEQFFRL 494

Query: 318 LDQMPYKNIAAQTAMI------SGYVQNKRMDEANQIFDKIG-THDVVCWNVMIKGYAQC 370
           L +M +      +  I      S +   K + E++    ++G T D    N ++  YA+C
Sbjct: 495 LGEMWHDVTQWDSVTILNIIRMSTFCGIKMVQESHGYSLRVGYTGDSSVANAILDAYAKC 554

Query: 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
           G + +A  LFR +  ++IVT NTMI+ Y +   ++DA   F  M ++ +  +WN +   +
Sbjct: 555 GYLHDAETLFRSLAGRNIVTGNTMISCYLKNNCVEDAEMTFNHMAEK-DLTTWNLMSRLY 613

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
            QN+    A  +F  +  EG   D  ++   LSAC HL+++QL +Q H   +++  + D+
Sbjct: 614 AQNDLCDQAFCLFHQLQSEGLNPDTISITNILSACIHLSSVQLVKQCHGYMLRAS-LEDI 672

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME 550
            +  +L+  Y+KCG I NA  LF+ +   D++ + ++I  YA++G A +A++LF +M+  
Sbjct: 673 HLEGALLDAYSKCGNIANAYNLFQVSLHKDLVIFTAMIGAYAMHGMAEKAVELFSKMLTL 732

Query: 551 GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDE 610
            + PD V    +LSACSH GLVD G+K+F+ + E+Y +EP  EH ACM+DLL+R+GRL +
Sbjct: 733 DIKPDHVVLTALLSACSHAGLVDAGIKIFKSIREIYGVEPTEEHCACMVDLLARSGRLQD 792

Query: 611 AFEMVKGMKIK-PNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHA 669
           A+     M     NA  WG+LLGAC++H  +K+G++A ++L  +E +    Y ++SN+ A
Sbjct: 793 AYSFALDMPPHVVNANAWGSLLGACKVHGEVKIGQLAADRLFSMEAEDIGNYVIMSNIFA 852

Query: 670 EAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAA 729
              +W+ VE VR  M+    +K  GCSWIEV+   H F++ D +      I + L +L  
Sbjct: 853 ADDKWESVEHVRKLMKSKDMKKPAGCSWIEVEKTRHLFVASDVQHQDRFSIYDVLGSLYQ 912

Query: 730 QIRNT 734
           QIR T
Sbjct: 913 QIRGT 917



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 164/393 (41%), Gaps = 73/393 (18%)

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM-----PERNPVS 297
           Y R G + +A  +FD+M   + V  N +I A  + G   +   LF  M      E  P +
Sbjct: 139 YGRIGSLADAHTVFDEMSCSDAVCRNILITASSRAGLYNDVFHLFRAMLASGVDESMPTA 198

Query: 298 WTTM-----------------IDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340
            T                   I GYV    L+      D +    + +  A   G +   
Sbjct: 199 VTVAVVLPVCAKLRVLRAGRSIHGYVIKTGLE-----FDTLSGNALVSMYAKCGGSIA-- 251

Query: 341 RMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK-------------- 386
            MD+A+  F  I   DVV WN +I GY++ G  +EA+ LF QM+++              
Sbjct: 252 -MDDAHLAFSTICCKDVVSWNSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLP 310

Query: 387 --------------------------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
                                     DI   N ++A Y+++ +M     IF    K  + 
Sbjct: 311 FCSLVEYGRHYGKEIHGFVVRHGLEMDISVSNALMAHYSKVCEMRAVESIFRS-SKMGDI 369

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
           V+WN +I+G++ N +   ALK+F  +   G   D  +L   L+ACA +  L++G ++H  
Sbjct: 370 VTWNTVIAGYVMNRYPSRALKLFQGLLFAGMAPDSVSLISLLTACAQVGNLRVGIRVHGY 429

Query: 481 AIKSG-YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATE 539
             +    + +  + N+L++ Y++C R   A   F      D +SWN++++  A + +  E
Sbjct: 430 IFRHPELLQETSLMNALVSFYSQCDRFDAAFRSFITIQNKDSVSWNAILSACANSEHHIE 489

Query: 540 A-IKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
              +L  EM  +    D VT + ++   +  G+
Sbjct: 490 QFFRLLGEMWHDVTQWDSVTILNIIRMSTFCGI 522



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 117/295 (39%), Gaps = 48/295 (16%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G  +   N  I+   K+  VE+A   F+ M++K+  T+N M   YA+N   + A  LF Q
Sbjct: 569 GRNIVTGNTMISCYLKNNCVEDAEMTFNHMAEKDLTTWNLMSRLYAQNDLCDQAFCLFHQ 628

Query: 72  MPQRNL----VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKA 127
           +    L    +S  ++++  +H   V+  ++    M R  L                   
Sbjct: 629 LQSEGLNPDTISITNILSACIHLSSVQLVKQCHGYMLRASL------------------- 669

Query: 128 RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
                     ED     A++  Y+K GN   A  L      K++V + +M+  Y  +G  
Sbjct: 670 ----------EDIHLEGALLDAYSKCGNIANAYNLFQVSLHKDLVIFTAMIGAYAMHGMA 719

Query: 188 HLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVT 238
             A + F  M   D+    V    +L        +D+  K F+ I E   V         
Sbjct: 720 EKAVELFSKMLTLDIKPDHVVLTALLSACSHAGLVDAGIKIFKSIREIYGVEPTEEHCAC 779

Query: 239 MLSGYARNGRMLEARRLFDQMP--IRNVVAWNAMIAAYVQRGQIE----EAARLF 287
           M+   AR+GR+ +A      MP  + N  AW +++ A    G+++     A RLF
Sbjct: 780 MVDLLARSGRLQDAYSFALDMPPHVVNANAWGSLLGACKVHGEVKIGQLAADRLF 834



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 7/147 (4%)

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHL----AALQLGRQIHHLAIKSGYVNDLF 491
           H     +   M   G + +   LA A+ + + L        LGR +H LA+K GY +   
Sbjct: 71  HYGCTSLLRWMLARGLRPNRLALAAAVKSSSALPDCRGGAALGRCLHGLAVKVGYADGAV 130

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
           V  +++ MY + G + +A  +F +    D +  N LI   +  G   +   LF  M+  G
Sbjct: 131 VAKAVMDMYGRIGSLADAHTVFDEMSCSDAVCRNILITASSRAGLYNDVFHLFRAMLASG 190

Query: 552 V---APDPVTFIGVLSACSHVGLVDGG 575
           V    P  VT   VL  C+ + ++  G
Sbjct: 191 VDESMPTAVTVAVVLPVCAKLRVLRAG 217


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  338 bits (868), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 174/447 (38%), Positives = 257/447 (57%), Gaps = 12/447 (2%)

Query: 292 ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK 351
           E + +  T ++D Y ++  L  A+R+   MP +++ A  AMIS   ++  ++EA  +FD 
Sbjct: 42  EYDMILQTGLLDFYAKVGDLKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDN 101

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIF 411
           +   +   WN MI  Y + G ++ A  +F     KD+V+WN +I GY + +Q+  A ++F
Sbjct: 102 MTERNSCSWNSMITCYCKLGDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELF 161

Query: 412 EEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAAL 471
             MG  RN+V+WN +IS ++Q      A+ +F  M  E  K    T+   LSACAHL AL
Sbjct: 162 LLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGAL 221

Query: 472 QLGRQIHHLAIKSGYVN------DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
            +G  IH      GY+       D+ +GN+LI MY KCG ++ A  +F      ++  WN
Sbjct: 222 DMGEWIH------GYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWN 275

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
           S+I G  +NG   EAI  F  M  EG+ PD VTF+G+LS CSH GL+  G + F  M  V
Sbjct: 276 SIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGV 335

Query: 586 YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI 645
           Y +EP VEHY CM+DLL RAG L EA E+++ M +KPN+ + G+LL AC++H++ KLG  
Sbjct: 336 YGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQ 395

Query: 646 AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705
             ++L EL+P     Y  LSN++A   RWD+V   R  M   G  K PGCS IEV N +H
Sbjct: 396 VTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVH 455

Query: 706 TFLSGDPKQCRTAEICNTLKTLAAQIR 732
            F++GD    +  +I   L  +A +++
Sbjct: 456 EFVAGDTSHPQFTQINAFLDEIAKELK 482



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 158/332 (47%), Gaps = 64/332 (19%)

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML 209
           YAK+G+   AK++   MP +++V+ N+M+S  +K+G +  A   F+ M ER+  SWN M+
Sbjct: 55  YAKVGDLKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMI 114

Query: 210 DGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM-PIRNVVAWN 268
             Y +L D++SA   F   P ++VVSW  ++ GY ++ +++ A+ LF  M   RN V WN
Sbjct: 115 TCYCKLGDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWN 174

Query: 269 AMIAAYVQRGQIEEAARLFIEMPERN----PVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
            MI+AYVQ G+   A  +F +M   N     V+  +++     +  LD            
Sbjct: 175 TMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGE--------- 225

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
                   I GY++ KR+        KI   DVV  N +I  Y +CG ++ AI++F  + 
Sbjct: 226 -------WIHGYIRTKRL--------KI---DVVLGNALIDMYCKCGALEAAIDVFHGLS 267

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
            K+I  WN++I G     + ++A+                                  F+
Sbjct: 268 RKNIFCWNSIIVGLGMNGRGEEAI--------------------------------AAFI 295

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQ 476
           +M +EG K D  T    LS C+H   L  G++
Sbjct: 296 VMEKEGIKPDGVTFVGILSGCSHSGLLSAGQR 327



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 150/315 (47%), Gaps = 17/315 (5%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K G ++ A ++F  M +++ V  N+MISA +K+G V +AR LF+ M +RN  SWNSMI  
Sbjct: 57  KVGDLKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITC 116

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
           Y     +  AR +FD     D+ SW  +I  Y +  +L  A+ELF L+ +  ++  WN M
Sbjct: 117 YCKLGDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTM 176

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASKFFEAMEER-- 200
           ++ Y + G +  A  +   M S+N+    V+  S+LS     G + +       +  +  
Sbjct: 177 ISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRL 236

Query: 201 --DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
             DVV  N ++D Y +   L++A   F  +  +N+  W +++ G   NGR  EA   F  
Sbjct: 237 KIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIV 296

Query: 259 MPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEM-----PERNPVSWTTMIDGYVRIA 309
           M    +    V +  +++     G +    R F EM      E     +  M+D   R  
Sbjct: 297 MEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAG 356

Query: 310 KLDEARRLLDQMPYK 324
            L EA  L+  MP K
Sbjct: 357 YLKEALELIRAMPMK 371



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 84/180 (46%), Gaps = 13/180 (7%)

Query: 456 STLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD 515
           ++ +  L +CA     QLG   H   +K G+  D+ +   L+  YAK G ++ A+ +F  
Sbjct: 11  TSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAKRVFMG 70

Query: 516 ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
               DV++ N++I+  + +G   EA  LF+ M       +  ++  +++    +G ++  
Sbjct: 71  MPRRDVVANNAMISALSKHGYVEEARNLFDNMTER----NSCSWNSMITCYCKLGDINSA 126

Query: 576 LKLFECMTEVYAIEPL--VEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
             +F+C        P+  V  +  +ID   ++ +L  A E+   M    N+  W T++ A
Sbjct: 127 RLMFDC-------NPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISA 179


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  338 bits (868), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 211/644 (32%), Positives = 338/644 (52%), Gaps = 58/644 (9%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKN-IVSWNSMLSGYTKNGEMHLASKFFEAMEERDV 202
           N++V+ YAK  +   A+KL D M  +N +VSWNS++S Y+ NG+   A   F  M++  V
Sbjct: 49  NSLVSMYAKCNDILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGV 108

Query: 203 VSWNLMLDGYVELDDLDSAWK-----FFQKIPEQNVVSWV----TMLSGYARNGRMLEAR 253
            +    L   ++  + DS++K         I + N V  V     +++ + R G+M  A 
Sbjct: 109 GANTYTLVAALQACE-DSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAA 167

Query: 254 RLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN----PVSWTTMIDGYVRIA 309
           R+FD++  ++ + WN+MIA + Q G   EA + F  + + N     VS  +++    R+ 
Sbjct: 168 RIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLG 227

Query: 310 KLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIK 365
            L   + +    +      N+     +I  Y +   +  A  +FDK+   D++ W  +I 
Sbjct: 228 YLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIA 287

Query: 366 GYAQCGRMDEAINLFRQMVNK--------------------------------------D 387
            YAQ     EA+ L R++  K                                      D
Sbjct: 288 AYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSD 347

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMT 447
           ++  N +I  YA    ++ A ++FE + K ++ VSW ++IS ++ N    +AL +F LM 
Sbjct: 348 LMMQNMIIDVYADCGNINYATRMFESI-KCKDVVSWTSMISCYVHNGLANEALGVFYLMK 406

Query: 448 QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
           +   + D  TL   LSA A L+AL  G++IH    + G++ +    NSL+ MYA CG ++
Sbjct: 407 ETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLE 466

Query: 508 NAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
           NA  +F       ++ W ++I  Y ++G    A++LF  M  + + PD +TF+ +L ACS
Sbjct: 467 NAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACS 526

Query: 568 HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIW 627
           H GL++ G +L E M   Y +EP  EHYAC++DLL RA  L+EA+  VK M+I+P A +W
Sbjct: 527 HSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVW 586

Query: 628 GTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGS 687
              LGACR+H N KLG IA +KL +L+P     Y L+SN+ A +GRW +VE+VR+ M+G 
Sbjct: 587 CAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMKGG 646

Query: 688 GAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           G +K PGCSWIEV N++HTFL  D     + +I   L  +  ++
Sbjct: 647 GLKKNPGCSWIEVGNKVHTFLVRDKSHPESYKIYQKLAQITEKL 690



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 117/499 (23%), Positives = 233/499 (46%), Gaps = 38/499 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKN-TVTYNSMISAYAKNGRVNDARKLFEQ 71
           S VF  N  ++   K   +  A K+F +M+++N  V++NS+ISAY+ NG+  +A  LF +
Sbjct: 43  SIVFVANSLVSMYAKCNDILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFRE 102

Query: 72  MPQRNLVSWNSMIAGYLH----NDKVKEARELFDKMFRP----DLFSWALMITCYTRKGE 123
           M +  + +    +   L     +   K   E+   + +     D++    ++  + R G+
Sbjct: 103 MQKAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGK 162

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLS 179
           +  A  +FD L  K D   WN+M+AG+ + G YNEA +    +   N+    VS  S+L+
Sbjct: 163 MSYAARIFDELDEK-DNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILA 221

Query: 180 -----GYTKNG-EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV 233
                GY  NG E+H  +   +   + ++   N ++D Y +   +  A   F K+  +++
Sbjct: 222 ASGRLGYLLNGKEIHAYA--MKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDL 279

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQ-----MPIRNVVAWNAMIAAYVQR--GQIEEAARL 286
           +SW T+++ YA+N    EA +L  +     M +  ++  + ++A    R     +E    
Sbjct: 280 ISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGY 339

Query: 287 FIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEAN 346
            ++    + +    +ID Y     ++ A R+ + +  K++ + T+MIS YV N   +EA 
Sbjct: 340 TLKRGLSDLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEAL 399

Query: 347 QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN--------LFRQMVNKDIVTWNTMIAGY 398
            +F  +    V   ++ +           A+N        +FR+    +  T N+++  Y
Sbjct: 400 GVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMY 459

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           A    +++A K+F    + ++ V W  +I+ +  +     A+++F +M  +    DH T 
Sbjct: 460 ACCGSLENAYKVF-ICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITF 518

Query: 459 ACALSACAHLAALQLGRQI 477
              L AC+H   +  G+++
Sbjct: 519 LALLYACSHSGLINEGKRL 537



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 112/465 (24%), Positives = 178/465 (38%), Gaps = 129/465 (27%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V+  N  +    + G++  A +IF ++ +K+ +T+NSMI+ + +NG  N+A + F  +  
Sbjct: 147 VYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQD 206

Query: 75  RNL----VSWNSMIA-----GYLHNDK------------------------------VKE 95
            NL    VS  S++A     GYL N K                              V  
Sbjct: 207 ANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAY 266

Query: 96  ARELFDKMFRPDLFSWALMITCYTR----------------KGE---------------- 123
           A  +FDKM   DL SW  +I  Y +                KG                 
Sbjct: 267 AGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSG 326

Query: 124 ---LEKAREL--FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSML 178
              L  A+E+  + L     D    N ++  YA  GN N A ++ +++  K++VSW SM+
Sbjct: 327 LRCLSHAKEVHGYTLKRGLSDLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMI 386

Query: 179 SGYTKNGEMHLASKFFEAMEERDV------------------------------------ 202
           S Y  NG  + A   F  M+E  V                                    
Sbjct: 387 SCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFM 446

Query: 203 ---VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF--- 256
               + N ++D Y     L++A+K F     +++V W TM++ Y  +GR   A  LF   
Sbjct: 447 LEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIM 506

Query: 257 -DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-----ERNPVSWTTMIDGYVRIAK 310
            DQ  I + + + A++ A    G I E  RL   M      E  P  +  ++D   R   
Sbjct: 507 EDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANH 566

Query: 311 LDEARRLLDQMPYKNIAAQTAMISGYVQ---NKRMDE--ANQIFD 350
           L+EA   +  M  +  A       G  +   NK++ E  A ++ D
Sbjct: 567 LEEAYHFVKSMQIEPTAEVWCAFLGACRIHSNKKLGEIAAQKLLD 611



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 67/118 (56%), Gaps = 1/118 (0%)

Query: 450 GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA 509
           G   D  T  C L AC  +  +  G +IH L IK GY + +FV NSL++MYAKC  I  A
Sbjct: 5   GVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGA 64

Query: 510 ELLFKDADPV-DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
             LF   +   DV+SWNS+I+ Y++NG   EA+ LF EM   GV  +  T +  L AC
Sbjct: 65  RKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQAC 122


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  338 bits (868), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 253/824 (30%), Positives = 391/824 (47%), Gaps = 110/824 (13%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGR-----VNDARKLFE 70
           F  N  I+   K G +  A ++F +M +++ V++NS+++AYA++       V +A  LF 
Sbjct: 82  FLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFR 141

Query: 71  QMPQRNL----------------------------------VSWNSMIAG-----YLHND 91
            + Q  +                                  +  +  +AG     YL   
Sbjct: 142 ILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFG 201

Query: 92  KVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD------LLPNKEDTACWNA 145
           KVKE R LF++M   D+  W LM+  Y   G  E+A +L        L PN+      + 
Sbjct: 202 KVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLSR 261

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV--- 202
           +    ++ G     +   DA     I+S N +LSGY   G+     K F  M E D+   
Sbjct: 262 ISGDDSEAGQVKSFENGNDASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECD 321

Query: 203 -VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT----MLSGYARNGRMLEARRLFD 257
            V++ L+L   V LD L    +      +  +   +T    +++ Y +  ++  AR +F+
Sbjct: 322 QVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFN 381

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE--RNPVSWTTMIDGYVRIAKLDEAR 315
            M  R++++WN++IA   Q     EA  LF+++      P  +T M       + L E  
Sbjct: 382 NMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYT-MTSVLKAASSLPEGL 440

Query: 316 RLLDQM-----PYKNIA---AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367
            L  Q+        N+A     TA+I  Y +N+ M EA  +F +    D+V WN M+ GY
Sbjct: 441 SLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGY 499

Query: 368 AQCGRMDEAINLFRQM------------------------VNK-------------DIVT 390
            Q     + + LF  M                        +N+             D+  
Sbjct: 500 TQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDL 559

Query: 391 W--NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
           W  + ++  Y +   M  A   F+ +    + V+W  LISG ++N     AL +F  M  
Sbjct: 560 WVSSGILDMYVKCGDMSAAQFAFDSI-PVPDDVAWTTLISGCIENGEEERALHVFSQMRL 618

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
            G   D  T+A    A + L AL+ GRQIH  A+K    +D FVG SL+ MYAKCG I +
Sbjct: 619 MGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDD 678

Query: 509 AELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
           A  LFK  + +++ +WN+++ G A +G   EA++LF++M   G+ PD VTFIGVLSACSH
Sbjct: 679 AYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSH 738

Query: 569 VGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWG 628
            GLV    K    M   Y I+P +EHY+C+ D L RAG + EA  ++  M ++ +A ++ 
Sbjct: 739 SGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYR 798

Query: 629 TLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688
           TLL ACR+  + + G+    KL ELEP  +S Y LLSNM+A A +WDE++  R  M+G  
Sbjct: 799 TLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHK 858

Query: 689 AQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            +K PG SWIEVKN+IH F+  D    +T  I   +K +   I+
Sbjct: 859 VKKDPGFSWIEVKNKIHLFVVDDRSNPQTELIYKKVKDMIRDIK 902



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 19/136 (13%)

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
           L LG+  H   +      + F+ N+LI+MY+KCG +  A  +F      D++SWNS++A 
Sbjct: 62  LMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAA 121

Query: 531 YA-----INGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
           YA     +  N  EA  LF  +  + V    +T   +L  C H G V        C +E 
Sbjct: 122 YAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV--------CASES 173

Query: 586 YAIEPLVEHYACMIDL 601
           +        YAC I L
Sbjct: 174 F------HGYACKIGL 183


>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  338 bits (868), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 186/528 (35%), Positives = 288/528 (54%), Gaps = 25/528 (4%)

Query: 221 AWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ---- 276
           A   F +I + +V+ + T++  + RN   L A  +F +M    V A N      ++    
Sbjct: 68  AVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSG 127

Query: 277 ----------RGQIEEAAR-LFIEMPERNPVSWTTMIDGYVR--IAKLDEARRLLDQMPY 323
                       Q+E+    L I +P        ++ID Y +  +  +  AR++ + M  
Sbjct: 128 KVWVRVVEMIHAQVEKMGFCLDIFVP-------NSLIDSYFKCGLDGVAAARKVFEVMAE 180

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
           ++  +  +MI G V+   + EA ++FD++   D V WN ++ GY + G M+ A  LF +M
Sbjct: 181 RDTVSWNSMIGGLVKVGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKM 240

Query: 384 VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
             +++V+W+TM+ GY++   MD A  +F++M   +N V W  +ISG+ +     DA+ ++
Sbjct: 241 PARNVVSWSTMVLGYSKAGDMDMARILFDKM-PVKNLVPWTIMISGYAEKGLAKDAINLY 299

Query: 444 VLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
             M + G K D  T+   LSACA    L LG+++H    ++ +     V N+LI MYAKC
Sbjct: 300 NQMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKC 359

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
           G ++NA  +F      DV+SWN++I G A++G+  +A++LF  M  EG  PD VTF+GVL
Sbjct: 360 GSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVL 419

Query: 564 SACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPN 623
            AC+H G VD GL  F  M   Y + P VEHY CM+DLL R GRL EAF +V  M ++PN
Sbjct: 420 CACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLEPN 479

Query: 624 AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVS 683
           A IWGTLLGACRMH    L     ++L + E   +   ++LSN++A AG WD    +R+ 
Sbjct: 480 AIIWGTLLGACRMHSATGLAEEVFDRLVKSELSDSGNLSMLSNIYAAAGDWDNFANIRLR 539

Query: 684 MEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           M+ +  QK  G S IEV +++H F   D    ++  I  T+  L   I
Sbjct: 540 MKSTSIQKPSGGSSIEVDDEVHEFTVFDRSHPKSDRIYKTIDGLGQHI 587



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 138/552 (25%), Positives = 253/552 (45%), Gaps = 86/552 (15%)

Query: 20  KKITQLGKSGRVEEAIKIFSQMSQKN----TVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           +KI+ L +   + +  +I +Q+ + N    +     +I+A++   ++  A  +F Q+   
Sbjct: 19  QKISDLHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDP 78

Query: 76  NLVSWNSMIAGYLHNDKVKEARELF----DKMFRPDLFSWALMITCYTRK---------- 121
           +++ +N++I  ++ N +   A  +F    D     D F++  ++   + K          
Sbjct: 79  DVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIH 138

Query: 122 GELEKARELFDLLPNKEDTACWNAMVAGYAKIG--NYNEAKKLLDAMPSKNIVSWNSMLS 179
            ++EK     D+          N+++  Y K G      A+K+ + M  ++ VSWNSM+ 
Sbjct: 139 AQVEKMGFCLDIF-------VPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIG 191

Query: 180 GYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTM 239
           G  K GE+  A + F+ M ERD VSWN +LDGYV+  ++++A++ F+K+P +NVVSW TM
Sbjct: 192 GLVKVGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTM 251

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWT 299
           + GY++ G M  AR LFD+MP++N+V W  MI+ Y ++G  ++A  L+ +M E    +  
Sbjct: 252 VLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEE----AGL 307

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
              DG V          +L       +      +   ++  R   +  +           
Sbjct: 308 KFDDGTV--------ISILSACAVSGLLGLGKRVHASIERTRFKCSTPVS---------- 349

Query: 360 WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRN 419
            N +I  YA+CG ++ A+++F  MV KD+V+WN +I G A               G++  
Sbjct: 350 -NALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLA-----------MHGHGEK-- 395

Query: 420 TVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG-RQIH 478
                              AL++F  M  EG   D  T    L AC H   +  G    H
Sbjct: 396 -------------------ALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFH 436

Query: 479 HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAINGN 536
            +    G   ++     ++ +  + GR++ A  L      +P + I W +L+    ++  
Sbjct: 437 AMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLEP-NAIIWGTLLGACRMHSA 495

Query: 537 ATEAIKLFEEMV 548
              A ++F+ +V
Sbjct: 496 TGLAEEVFDRLV 507



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 149/307 (48%), Gaps = 29/307 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I  L K G + EA ++F +M +++TV++N+++  Y K G +N A +LFE+MP RN+V
Sbjct: 187 NSMIGGLVKVGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVV 246

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN-- 136
           SW++M+ GY     +  AR LFDKM   +L  W +MI+ Y  KG  + A  L++ +    
Sbjct: 247 SWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAG 306

Query: 137 -KED--------TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
            K D        +AC    V+G   +G    A            VS N+++  Y K G +
Sbjct: 307 LKFDDGTVISILSAC---AVSGLLGLGKRVHASIERTRFKCSTPVS-NALIDMYAKCGSL 362

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK------IPEQNVVSWVTMLS 241
             A   F  M  +DVVSWN ++ G       + A + F +      +P++  V++V +L 
Sbjct: 363 ENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDK--VTFVGVLC 420

Query: 242 GYARNGRMLEARRLFDQMP-----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-ERNP 295
                G + E    F  M         V  +  M+    + G+++EA RL   MP E N 
Sbjct: 421 ACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLEPNA 480

Query: 296 VSWTTMI 302
           + W T++
Sbjct: 481 IIWGTLL 487



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 49/99 (49%)

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
           ++L   +QIH   +K+    + FVG  LI  ++ C ++  A  +F      DV+ +N+LI
Sbjct: 28  SSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLI 87

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
             +  N     A  +F EM   GV  D  T+  +L ACS
Sbjct: 88  RAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACS 126


>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570 [Vitis vinifera]
          Length = 561

 Score =  338 bits (868), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 185/494 (37%), Positives = 285/494 (57%), Gaps = 12/494 (2%)

Query: 215 LDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV----AWNAM 270
           L +       F  +   + V W T + GY+ N  +     LF +M   + V     + ++
Sbjct: 70  LSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSL 129

Query: 271 IAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           I A  +   ++E    F     R  V       T++ID Y +  ++  AR++ D+M  +N
Sbjct: 130 IKACSKVCGVKEGVA-FHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERN 188

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
           + + TAMI+GY     + EA ++FD++   + V WN +I GY +CG +  A  +F +M +
Sbjct: 189 VVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPH 248

Query: 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVL 445
           +++V++ TMI GYA+   M  A  +FEE    R+ V+W+ALISG++QN    +A+KIF+ 
Sbjct: 249 RNVVSFTTMIDGYAKSGDMASARFVFEE-APERDVVAWSALISGYVQNGQPNEAVKIFLE 307

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY-VNDLFVGNSLITMYAKCG 504
           M     K D   +   +SAC+ + +L+L + +     KS   V+   V  +LI M AKCG
Sbjct: 308 MCSRNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCG 367

Query: 505 RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLS 564
            +  A  LF++    D+IS+ S++ G +I+G   +A+ LF  M+ EG+ PD V F  +L+
Sbjct: 368 SMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILT 427

Query: 565 ACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNA 624
           ACS  GLVD G   FE M   Y+I P  +HYACM+DLL RAGRL EA+E++K M ++P+A
Sbjct: 428 ACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHA 487

Query: 625 GIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSM 684
           G WG LLGAC++H +I+LG +  ++L ELEPQ    Y LLSN++A A +W +V  +R  M
Sbjct: 488 GAWGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKM 547

Query: 685 EGSGAQKQPGCSWI 698
              G +K PGCSWI
Sbjct: 548 RERGIRKIPGCSWI 561



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 197/369 (53%), Gaps = 24/369 (6%)

Query: 68  LFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMI-----TCY 118
           +F  +   + V WN+ I GY  N  V     LF +M R    PD F++  +I      C 
Sbjct: 79  VFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCG 138

Query: 119 TRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSML 178
            ++G       +   +    D     +++  Y K G    A+K+ D M  +N+VSW +M+
Sbjct: 139 VKEGVAFHGSAVRCGVGG--DVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMI 196

Query: 179 SGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
           +GY    ++  A K F+ M E++ VSWN ++ GYV+  DL SA K F ++P +NVVS+ T
Sbjct: 197 AGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTT 256

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PV 296
           M+ GYA++G M  AR +F++ P R+VVAW+A+I+ YVQ GQ  EA ++F+EM  RN  P 
Sbjct: 257 MIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPD 316

Query: 297 SW--TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ-----TAMISGYVQNKRMDEANQIF 349
            +   +++    ++  L+ A+ + D +   +I         A+I    +   MD A ++F
Sbjct: 317 EFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLF 376

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVTWNTMIAGYAQIRQMD 405
           +++   D++ +  M++G +  G   +A++LF +M+N+    D V +  ++   ++   +D
Sbjct: 377 EEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVD 436

Query: 406 DAVKIFEEM 414
           +    FE M
Sbjct: 437 EGCYYFESM 445



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/436 (27%), Positives = 210/436 (48%), Gaps = 67/436 (15%)

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL----- 207
           + N++    + + + S + V WN+ + GY++N  + L    F  M+  D V         
Sbjct: 70  LSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSL 129

Query: 208 ----------------------------------MLDGYVELDDLDSAWKFFQKIPEQNV 233
                                             ++D Y +  ++  A K F ++ E+NV
Sbjct: 130 IKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNV 189

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           VSW  M++GYA    ++EAR+LFD+MP +N V+WNA+I+ YV+ G +  A ++F EMP R
Sbjct: 190 VSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHR 249

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
           N VS+TTMIDGY +   +  AR + ++ P +++ A +A+ISGYVQN + +EA +IF ++ 
Sbjct: 250 NVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMC 309

Query: 354 THDVVCWN-VMIKGYAQCGRM--------------DEAINLFRQMVNKDIVTWNTMIAGY 398
           + +V     +M+   + C +M                +I++ R  V   ++  N      
Sbjct: 310 SRNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMN------ 363

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           A+   MD A K+FEEM K R+ +S+ +++ G   +     A+ +F  M  EG   D    
Sbjct: 364 AKCGSMDRATKLFEEMPK-RDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAF 422

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGY--VNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
              L+AC+    +  G   +  ++K+ Y  V        ++ +  + GR++ A  L K  
Sbjct: 423 TVILTACSRAGLVDEG-CYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSM 481

Query: 517 DPVD--VISWNSLIAG 530
            PV+    +W +L+  
Sbjct: 482 -PVEPHAGAWGALLGA 496



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 178/330 (53%), Gaps = 21/330 (6%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G  VF     I   GK G +  A K+F +M ++N V++ +MI+ YA    + +ARKLF++
Sbjct: 155 GGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDE 214

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           MP++N VSWN++I+GY+    ++ AR++FD+M   ++ S+  MI  Y + G++  AR +F
Sbjct: 215 MPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFVF 274

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEM 187
           +  P + D   W+A+++GY + G  NEA K+   M S+N+        S++S  ++ G +
Sbjct: 275 EEAPER-DVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEFIMVSLMSACSQMGSL 333

Query: 188 HLASKFFEAMEERDVVSWN------LMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
            LA K+ +    +  +  +       ++D   +   +D A K F+++P+++++S+ +M+ 
Sbjct: 334 ELA-KWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQ 392

Query: 242 GYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPE----- 292
           G + +G   +A  LF +M    +    VA+  ++ A  + G ++E    F  M       
Sbjct: 393 GLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIV 452

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
            +P  +  M+D   R  +L EA  LL  MP
Sbjct: 453 PSPDHYACMVDLLGRAGRLKEAYELLKSMP 482



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 9/164 (5%)

Query: 456 STLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD 515
           S+++  L AC   + L+   Q+H   I+ G   D F+ +  +T+            +F  
Sbjct: 26  SSISTLLKACTTTSTLE---QVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNG 82

Query: 516 ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
                 + WN+ I GY+ N + +  + LF  M      PD  T+  ++ ACS V  V  G
Sbjct: 83  VSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEG 142

Query: 576 LKL----FECMT--EVYAIEPLVEHYACMIDLLSRAGRLDEAFE 613
           +        C    +V+ +  L++ Y    ++L      DE  E
Sbjct: 143 VAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGE 186


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  338 bits (868), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 187/547 (34%), Positives = 302/547 (55%), Gaps = 22/547 (4%)

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVE-LDDLDSAWKFFQKIPEQ-----NVVSWVT 238
             +  A K F+ + + +  +WN ++  Y    D + S W F   +  +     N  ++  
Sbjct: 79  ASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPF 138

Query: 239 MLSGYARNGRMLEARRLFDQMPIR-----NVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           ++   A    +   + L   M I+     +V   N++I  Y   G ++ A ++F  + E+
Sbjct: 139 LIKAAAEVSSLSLGQSLHG-MAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEK 197

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIF 349
           + VSW +MI+G+V+    D+A  L  +M  +++ A       ++S   + + ++   ++ 
Sbjct: 198 DVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVC 257

Query: 350 DKIGTHDV----VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMD 405
             I  + V       N M+  Y +CG +++A  LF  M  KD VTW TM+ GYA     +
Sbjct: 258 SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYE 317

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF-VLMTQEGKKADHSTLACALSA 464
            A ++   M K+ + V+WNALIS + QN    +AL +F  L  Q+  K +  TL   LSA
Sbjct: 318 AAREVLNAMPKK-DIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSA 376

Query: 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
           CA + AL+LGR IH    K+G   + +V ++LI MY+KCG ++ A  +F   +  DV  W
Sbjct: 377 CAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVW 436

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           +++I G A++G  +EA+ +F +M    V P+ VTF  V  ACSH GLVD    LF  M  
Sbjct: 437 SAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMES 496

Query: 585 VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
            Y I P  +HYAC++D+L R+G L++A + ++ M I P+  +WG LLGAC++H N+ L  
Sbjct: 497 SYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAE 556

Query: 645 IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQI 704
           +A  +L ELEP+    + LLSN++A++G+WD V ++R  M  +G +K+PGCS IE+   I
Sbjct: 557 MACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMI 616

Query: 705 HTFLSGD 711
           H FLSGD
Sbjct: 617 HEFLSGD 623



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 105/423 (24%), Positives = 191/423 (45%), Gaps = 61/423 (14%)

Query: 53  ISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHN-DKVKEARELFDKMFR-----P 106
           I+A +    +  ARK+F+++PQ N  +WN++I  Y    D V       D +       P
Sbjct: 72  IAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYP 131

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLL 163
           + +++  +I        L   + L  +        D    N+++  Y   G+ + A K+ 
Sbjct: 132 NKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVF 191

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV--------------------- 202
             +  K++VSWNSM++G+ + G    A + F+ ME  DV                     
Sbjct: 192 TTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLE 251

Query: 203 -------------VSWNL-----MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYA 244
                        V+ NL     MLD Y +   ++ A + F  + E++ V+W TML GYA
Sbjct: 252 FGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYA 311

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-----ERNPVSWT 299
            +     AR + + MP +++VAWNA+I+AY Q G+  EA  +F E+      + N ++  
Sbjct: 312 ISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLV 371

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYK----NIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
           + +    ++  L+  R +   +       N    +A+I  Y +   +++A ++F+ +   
Sbjct: 372 STLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKR 431

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIF 411
           DV  W+ MI G A  G   EA+++F +M    V  + VT+  +    +    +D+A  +F
Sbjct: 432 DVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLF 491

Query: 412 EEM 414
            +M
Sbjct: 492 YKM 494



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 167/332 (50%), Gaps = 24/332 (7%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS VF  N  I      G ++ A K+F+ + +K+ V++NSMI+ + + G  + A +LF++
Sbjct: 165 GSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKK 224

Query: 72  MPQRNLVSWNSMIAGYLHN-DKVKE-------ARELFDKMFRPDLFSWALMITCYTRKGE 123
           M   ++ + +  + G L    K+++          + +     +L     M+  YT+ G 
Sbjct: 225 MESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGS 284

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK 183
           +E A+ LFD +  K D   W  M+ GYA   +Y  A+++L+AMP K+IV+WN+++S Y +
Sbjct: 285 IEDAKRLFDAMEEK-DNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQ 343

Query: 184 NGEMHLASKFFEAMEERDVVSWNLM-----LDGYVELDDLDSAWKFFQKIPEQNVVS--- 235
           NG+ + A   F  ++ +  +  N +     L    ++  L+   ++     ++N +    
Sbjct: 344 NGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELG-RWIHSYIKKNGIKMNF 402

Query: 236 WVT--MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE- 292
           +VT  ++  Y++ G + +AR +F+ +  R+V  W+AMI      G   EA  +F +M E 
Sbjct: 403 YVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEA 462

Query: 293 ---RNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
               N V++T +         +DEA  L  +M
Sbjct: 463 NVKPNGVTFTNVFCACSHTGLVDEAESLFYKM 494



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 122/459 (26%), Positives = 198/459 (43%), Gaps = 72/459 (15%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL- 108
           NS+I  Y   G ++ A K+F  + ++++VSWNSMI G++      +A ELF KM   D+ 
Sbjct: 172 NSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVK 231

Query: 109 ---FSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKL 162
               +   +++   +  +LE  R +   +       +    NAM+  Y K G+  +AK+L
Sbjct: 232 ASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRL 291

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAW 222
            DAM  K+ V+W +ML GY  + +   A +   AM ++D+V+WN ++  Y +    + A 
Sbjct: 292 FDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEAL 351

Query: 223 KFFQKIPEQ-----NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN-----AMIA 272
             F ++  Q     N ++ V+ LS  A+ G  LE  R       +N +  N     A+I 
Sbjct: 352 LVFHELQLQKNIKLNQITLVSTLSACAQVG-ALELGRWIHSYIKKNGIKMNFYVTSALIH 410

Query: 273 AYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAM 332
            Y + G +E+A  +F  + +R+   W+ MI G        EA      M YK        
Sbjct: 411 MYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAV----DMFYK-------- 458

Query: 333 ISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK-DIVTW 391
                    M EAN   + +   +V C        +  G +DEA +LF +M +   IV  
Sbjct: 459 ---------MQEANVKPNGVTFTNVFC------ACSHTGLVDEAESLFYKMESSYGIVPE 503

Query: 392 NTMIAGYAQIR----QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMT 447
           +   A    +      ++ AVK  E M    +T  W AL          L A KI     
Sbjct: 504 DKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGAL----------LGACKI----- 548

Query: 448 QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
                  H+ L+ A  AC  L  L+      H+ + + Y
Sbjct: 549 -------HANLSLAEMACTRLLELEPRNDGAHVLLSNIY 580



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 150/326 (46%), Gaps = 25/326 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +    K G +E+A ++F  M +K+ VT+ +M+  YA +     AR++   MP++++V
Sbjct: 273 NAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIV 332

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFDL 133
           +WN++I+ Y  N K  EA  +F ++      + +  +    ++   + G LE  R +   
Sbjct: 333 AWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSY 392

Query: 134 LPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           +     K +    +A++  Y+K G+  +A+++ +++  +++  W++M+ G   +G    A
Sbjct: 393 IKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEA 452

Query: 191 SKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQK-------IPEQNVVSWVTM 239
              F  M+E +V    V++  +         +D A   F K       +PE    + +  
Sbjct: 453 VDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVD 512

Query: 240 LSGYARNGRMLEARRLFDQMPI-RNVVAWNAMIAA---YVQRGQIEEAARLFIEMPERNP 295
           + G  R+G + +A +  + MPI  +   W A++ A   +      E A    +E+  RN 
Sbjct: 513 VLG--RSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELEPRND 570

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQM 321
            +   + + Y +  K D    L   M
Sbjct: 571 GAHVLLSNIYAKSGKWDNVSELRKHM 596



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 155/327 (47%), Gaps = 25/327 (7%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           N    N+M+  Y K G + DA++LF+ M +++ V+W +M+ GY  ++  + ARE+ + M 
Sbjct: 268 NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMP 327

Query: 105 RPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTA----CWNAMVAGYAKIGNYNEAK 160
           + D+ +W  +I+ Y + G+  +A  +F  L  +++         + ++  A++G   E  
Sbjct: 328 KKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGAL-ELG 386

Query: 161 KLLDAMPSKNIVSWN-----SMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
           + + +   KN +  N     +++  Y+K G++  A + F ++E+RDV  W+ M+ G    
Sbjct: 387 RWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMH 446

Query: 216 DDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAM 270
                A   F K+ E NV    V++  +    +  G + EA  LF +M     +V  +  
Sbjct: 447 GCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKH 506

Query: 271 IAAYV----QRGQIEEAARLFIEMPERNPVS-WTTMIDGYVRIAKLDEAR----RLLDQM 321
            A  V    + G +E+A +    MP     S W  ++      A L  A     RLL+  
Sbjct: 507 YACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELE 566

Query: 322 PYKNIAAQTAMISGYVQNKRMDEANQI 348
           P +N  A   + + Y ++ + D  +++
Sbjct: 567 P-RNDGAHVLLSNIYAKSGKWDNVSEL 592


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 225/794 (28%), Positives = 371/794 (46%), Gaps = 137/794 (17%)

Query: 20  KKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVS 79
           +K  QLG+  ++ + +   +++S  + V    +I+ Y+  G  +D+R +F+ + ++NL  
Sbjct: 94  RKDIQLGR--KIHQLVSESARLSNDD-VLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQ 150

Query: 80  WNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARELFDLL 134
           WN++I+ Y  N+      E+F KM       PD F++  ++       E++    +  L+
Sbjct: 151 WNAVISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLV 210

Query: 135 PNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
                 ED    NA+V+ Y   G+ ++A ++   MP +N+VSWNSM+  ++ NG      
Sbjct: 211 VKTRLVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECF 270

Query: 192 KFFEAMEERD-------------------------------------------VVSWNLM 208
                M E+D                                           VV  N +
Sbjct: 271 LLLGQMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNAL 330

Query: 209 LDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM--------- 259
           +D Y +   ++ A   F+    +NVVSW TM+ G++  G + +   L  QM         
Sbjct: 331 MDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRA 390

Query: 260 ---------PI------------------------RNVVAWNAMIAAYVQRGQIEEAARL 286
                    P+                         N +  NA +A+Y + G +  A R+
Sbjct: 391 DEVTILNAVPVCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRV 450

Query: 287 FIEMPERNPVSWTTMIDGYVRIA----KLDEARRLLDQMPYKNIAAQTAMISGYVQNKRM 342
           F  +  +   SW  +I GY + +     LD   ++       ++    +++S   Q K +
Sbjct: 451 FCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSL 510

Query: 343 DEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGY 398
               ++   I  +    D   +  ++  Y  CG +  A  LF  M +K +V+WNTM+ GY
Sbjct: 511 KLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGY 570

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
                                           LQN F   AL +F  M   G +    ++
Sbjct: 571 --------------------------------LQNGFPERALSLFRQMVLYGVQPCEISM 598

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
                AC+ L +L+LGR+ H  A+K    ++ F+  S+I MYAK G +  +  +F     
Sbjct: 599 MSVFGACSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKE 658

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
             V SWN+++ GY I+G A EAIKLFEEM   G  PD +TF+GVL+AC+H GLV  GL  
Sbjct: 659 RSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTY 718

Query: 579 FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEM-VKGMKIKPNAGIWGTLLGACRMH 637
            + M  ++ + P ++HYAC+ID+L RAG+LDEA ++  + M  +P  GIW  LL +CR+H
Sbjct: 719 LDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIH 778

Query: 638 QNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSW 697
           +N+++G     KL   EP+K   Y LLSN++A +G+WDEV KVR  M+    +K  GCSW
Sbjct: 779 KNLEMGEKIAAKLFVSEPEKPENYVLLSNLYAGSGKWDEVRKVRQRMKEMSLRKDAGCSW 838

Query: 698 IEVKNQIHTFLSGD 711
           IE+  ++ +F++G+
Sbjct: 839 IELNGKVFSFVAGE 852


>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
           [Vitis vinifera]
          Length = 575

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 175/467 (37%), Positives = 278/467 (59%), Gaps = 9/467 (1%)

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDG 304
           ++G+ L A  + + +   +V+   +++  Y + G + ++ ++F  MPERN V+W  MI G
Sbjct: 111 KHGKALHAESIKNGVDF-DVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICG 169

Query: 305 YVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT--HDVVCWNV 362
           Y+       A  L ++M  +       MI G+ ++   + A + FD + +   +VV W V
Sbjct: 170 YLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTV 229

Query: 363 MIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
           M+ GYA+   M+ A  +F  M  ++   W++MI+GY +   + +A  IF+ +   RN V+
Sbjct: 230 MVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRI-PVRNLVN 288

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482
           WN+LISG+ QN F  +AL+ F  M  EG + D  T+A  LSAC+ L  L  G++IHH+  
Sbjct: 289 WNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMN 348

Query: 483 KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIK 542
             G   + FV N L+ MYAKCG + NA L+F+     +   WNS+I+G+AI+G + EA++
Sbjct: 349 HKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALE 408

Query: 543 LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLL 602
            F  M      PD +TF+ VLSAC+H G V+ GL++F  M E Y +   ++HY C+IDLL
Sbjct: 409 FFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRM-EKYGLTTGIKHYGCLIDLL 467

Query: 603 SRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTS-C- 660
            RAGR+ EA++++K M +KPN  +WG LLGACR+H ++++    VE++ +++   +S C 
Sbjct: 468 GRAGRIKEAYDLIKRMPVKPNDVVWGALLGACRVHLDMEMADRVVEEIVKVDSNISSGCD 527

Query: 661 --YALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705
             Y LLSN++A + RW++ EK+R+ M   G QK  GCS I   N  H
Sbjct: 528 SHYVLLSNIYAASDRWEKAEKMRMEMANKGFQKTSGCSSIMPGNNTH 574



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 187/343 (54%), Gaps = 22/343 (6%)

Query: 88  LHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMV 147
           LH + +K   + FD M    L      +  Y + G +  +R++FD +P + +   WNAM+
Sbjct: 116 LHAESIKNGVD-FDVMIGTSL------VCMYAKCGNVVDSRKVFDYMPER-NAVTWNAMI 167

Query: 148 AGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM--EERDVVSW 205
            GY   G+   A  L + M  +  V+W  M+ G+ ++G+   A +FF+ +  E R+VV+W
Sbjct: 168 CGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTW 227

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
            +M+DGY    ++++A + F+ +P++N  +W +M+SGY + G + EAR +FD++P+RN+V
Sbjct: 228 TVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLV 287

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
            WN++I+ Y Q G  EEA   F +M     E + V+  +++    ++  LD  +++   M
Sbjct: 288 NWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMM 347

Query: 322 PYKNIAAQTAMISG----YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAI 377
            +K I     +++G    Y +   +  A  IF+ +   +  CWN MI G+A  G+  EA+
Sbjct: 348 NHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEAL 407

Query: 378 NLFRQMVNK----DIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
             F +M +     D +T+ ++++  A    ++  ++IF  M K
Sbjct: 408 EFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEK 450



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/435 (27%), Positives = 209/435 (48%), Gaps = 23/435 (5%)

Query: 11  KGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISA-----YAKNGRVNDA 65
           KG Y+      + +   S  + +  K     S KN V ++ MI       YAK G V D+
Sbjct: 89  KGVYLLGVAPLVLKACASLSIVKHGKALHAESIKNGVDFDVMIGTSLVCMYAKCGNVVDS 148

Query: 66  RKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELE 125
           RK+F+ MP+RN V+WN+MI GYL N   K A  LF+KM      +W  MI  + R G+ E
Sbjct: 149 RKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTE 208

Query: 126 KARELFDLLPNK-EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
            AR  FD +P++  +   W  MV GYA+      A+++ + MP +N  +W+SM+SGY K 
Sbjct: 209 TARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKK 268

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTML 240
           G +  A   F+ +  R++V+WN ++ GY +    + A + F K+     E + V+  ++L
Sbjct: 269 GNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVL 328

Query: 241 SGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
           S  ++ G +   +++   M  +    N    N ++  Y + G +  A  +F  M  RN  
Sbjct: 329 SACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRA 388

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFDKI 352
            W +MI G+    +  EA     +M   +         +++S       ++   +IF ++
Sbjct: 389 CWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRM 448

Query: 353 GTHDVVC----WNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAGYAQIRQMDDA 407
             + +      +  +I    + GR+ EA +L ++M V  + V W  ++        M+ A
Sbjct: 449 EKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALLGACRVHLDMEMA 508

Query: 408 VKIFEEMGKRRNTVS 422
            ++ EE+ K  + +S
Sbjct: 509 DRVVEEIVKVDSNIS 523



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 173/364 (47%), Gaps = 35/364 (9%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQ--KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVS 79
           I    +SG  E A + F  +    +N VT+  M+  YA+N  +  AR++FE MPQRN  +
Sbjct: 198 IDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFA 257

Query: 80  WNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN--- 136
           W+SMI+GY     VKEAR +FD++   +L +W  +I+ Y + G  E+A E F  +     
Sbjct: 258 WSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGF 317

Query: 137 KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASK 192
           + D     ++++  +++G  +  KK+   M  K I       N ++  Y K G++  A  
Sbjct: 318 EPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARL 377

Query: 193 FFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARNGR 248
            FE M  R+   WN M+ G+        A +FF ++ +     + ++++++LS  A  G 
Sbjct: 378 IFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGF 437

Query: 249 MLEARRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER-NPVSWTTMID 303
           +     +F +M        +  +  +I    + G+I+EA  L   MP + N V W  ++ 
Sbjct: 438 VNAGLEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALL- 496

Query: 304 GYVRIA-KLDEARRLLDQMPYKNIAAQTAMISGYV---------------QNKRMDEANQ 347
           G  R+   ++ A R+++++   +    +   S YV               +  RM+ AN+
Sbjct: 497 GACRVHLDMEMADRVVEEIVKVDSNISSGCDSHYVLLSNIYAASDRWEKAEKMRMEMANK 556

Query: 348 IFDK 351
            F K
Sbjct: 557 GFQK 560



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 115/229 (50%), Gaps = 9/229 (3%)

Query: 422 SWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLA 481
           +W  LI  +L      +AL ++  + ++G           L ACA L+ ++ G+ +H  +
Sbjct: 62  NWCHLIRSYLSQGAPREALLVYTGLRRKGVYL-LGVAPLVLKACASLSIVKHGKALHAES 120

Query: 482 IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
           IK+G   D+ +G SL+ MYAKCG + ++  +F      + ++WN++I GY  NG++  A+
Sbjct: 121 IKNGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAV 180

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601
            LFE+M +       VT+I ++   +  G  +   + F+   +V +    V  +  M+D 
Sbjct: 181 LLFEKMSIR----TAVTWIEMIDGFARSGDTETARRFFD---DVPSELRNVVTWTVMVDG 233

Query: 602 LSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL 650
            +R   ++ A E+ +GM  + N   W +++       N+K  R   +++
Sbjct: 234 YARNAEMEAAREVFEGMPQR-NFFAWSSMISGYCKKGNVKEARSIFDRI 281


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1038

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 221/781 (28%), Positives = 396/781 (50%), Gaps = 69/781 (8%)

Query: 22  ITQLGKSGRV-EEAIKIFSQMSQKNTVT----YNSMISAYAKNGRVNDARKLFEQMPQRN 76
           +T  G+SG +  E +++   +++   ++      +++  Y   G V+ +RK+FE+MP RN
Sbjct: 166 VTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRN 225

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMIT-CYTRKGELEKARELF 131
           +VSW S++ GY    + +E  +++  M       +  S +L+I+ C   K E    + + 
Sbjct: 226 VVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKDESLGRQIIG 285

Query: 132 DLLPNKEDT--ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
            ++ +  ++  A  N++++ +  +GN + A  + + +  ++ +SWNS+++ Y +NG +  
Sbjct: 286 QVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEE 345

Query: 190 ASKFFEAMEE-RDVVSWNLMLDGYVELDDLD-SAWK-----FFQKIPEQNVVSWV-TMLS 241
           +S+ F  M    D V+   +      L D+D   W         K+   +VV    T+L 
Sbjct: 346 SSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLR 405

Query: 242 GYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----------- 290
            YA  GR  EA  +F QMP +++++WN+++A++V  G+  +A  +   M           
Sbjct: 406 MYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVT 465

Query: 291 ----------PE------------------RNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
                     PE                   N +    ++  Y +I  +  +RR+L QMP
Sbjct: 466 FTSALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMP 525

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC-WNVMIKGYAQC----GRMDEAI 377
            +++ A  A+I GY +N+  D+A   F  +    V   +  ++   + C      ++   
Sbjct: 526 RRDVVAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGK 585

Query: 378 NLFRQMVN----KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433
            L   +V+     D    N++I  YA+   +  +  +F  +   R+ ++WNA+++    +
Sbjct: 586 PLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGL-DNRSIITWNAILAANAHH 644

Query: 434 EFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG 493
               + LK+   M   G   D  + +  LSA A LA L+ G+Q+H LA+K G+  D F+ 
Sbjct: 645 GHGEEVLKLVSKMRSFGLSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFELDCFIF 704

Query: 494 NSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA 553
           N+   MY+KCG I     +   +    + SWN LI+    +G   E  + F EM+  G+ 
Sbjct: 705 NAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCETFHEMLEMGIK 764

Query: 554 PDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFE 613
           P  VTF+ +L+ACSH GLVD GL  ++ + + + +EP +EH  C+IDLL R+GRL EA  
Sbjct: 765 PGHVTFVSLLTACSHGGLVDQGLAYYDMIAKDFGLEPAIEHCICVIDLLGRSGRLAEAET 824

Query: 614 MVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGR 673
            +  M +KPN  +W +LL +C++H+++  GR A E LS+LEP+  S + L SNM A  GR
Sbjct: 825 FISKMPMKPNDLVWRSLLASCKIHRDLDRGRKAAENLSKLEPEDDSVFVLSSNMFATTGR 884

Query: 674 WDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           W++VE VR  M     +K+  CSW+++K+++ +F  GD    +T EI   L+ +   I+ 
Sbjct: 885 WEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKE 944

Query: 734 T 734
           +
Sbjct: 945 S 945



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 148/544 (27%), Positives = 258/544 (47%), Gaps = 77/544 (14%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           N++I+ Y K GRV  AR LF++MP RN VSWN+M++G +      E  E F KM     +
Sbjct: 97  NTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIVRVGLYLEGMEFFQKMCDLGIK 156

Query: 106 PDLFSWALMITCYTRKGEL-EKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKK 161
           P  F  A ++T   R G +  +  ++   +       D     A++  Y   G  + ++K
Sbjct: 157 PSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRK 216

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV----SWNLMLDGYVELDD 217
           + + MP +N+VSW S++ GY+  GE       +++M    V     S +L++     L D
Sbjct: 217 VFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKD 276

Query: 218 LDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
                +   ++ +  + S +    +++S +   G +  A  +F+Q+  R+ ++WN+++AA
Sbjct: 277 ESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAA 336

Query: 274 YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMI 333
           Y Q G IEE++R+F  M                        RR  D++    ++   +++
Sbjct: 337 YAQNGHIEESSRIFNLM------------------------RRFHDEVNSTTVSTLLSVL 372

Query: 334 SGYVQNKRMDEANQIFDKIGTHDVVC-WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWN 392
                 K     + +  K+G   VVC  N +++ YA  GR +EA  +F+QM  KD+++WN
Sbjct: 373 GDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWN 432

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
           +++A +    +  DA                                L I   M + GK 
Sbjct: 433 SLMASFVNDGRSLDA--------------------------------LGILCSMIRTGKS 460

Query: 453 ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512
            ++ T   AL+AC        GR +H L + SG  ++  +GN+L++MY K G +  +  +
Sbjct: 461 VNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRV 520

Query: 513 FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
                  DV++WN+LI GYA N +  +A+  F+ + +EGV+ + +T + VLSAC    LV
Sbjct: 521 LLQMPRRDVVAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSAC----LV 576

Query: 573 DGGL 576
            G L
Sbjct: 577 PGDL 580



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/392 (23%), Positives = 175/392 (44%), Gaps = 80/392 (20%)

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
           +V+  N +I  Y + G+++ A  LF +MP RN VSW TM+ G VR+    E      +M 
Sbjct: 92  SVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIVRVGLYLEGMEFFQKMC 151

Query: 323 ----------------------------------------YKNIAAQTAMISGYVQNKRM 342
                                                     ++   TA++  Y     +
Sbjct: 152 DLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLV 211

Query: 343 DEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM------------------- 383
             + ++F+++   +VV W  ++ GY+  G  +E I++++ M                   
Sbjct: 212 SCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSC 271

Query: 384 --------------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
                               +   +   N++I+ +  +  +D A  IF ++ +R +T+SW
Sbjct: 272 GLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISER-DTISW 330

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
           N++++ + QN    ++ +IF LM +   + + +T++  LS    +   + GR IH L +K
Sbjct: 331 NSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVK 390

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
            G+ + + V N+L+ MYA  GR + A+L+FK     D+ISWNSL+A +  +G + +A+ +
Sbjct: 391 MGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGI 450

Query: 544 FEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
              M+  G + + VTF   L+AC      D G
Sbjct: 451 LCSMIRTGKSVNYVTFTSALAACFSPEFFDKG 482



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 126/597 (21%), Positives = 245/597 (41%), Gaps = 101/597 (16%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM----P 73
           +N  I+  G  G V+ A  IF+Q+S+++T+++NS+++AYA+NG + ++ ++F  M     
Sbjct: 299 ENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHD 358

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWAL----MITCYTRKGELEKARE 129
           + N  + +++++     D  K  R +   + +    S       ++  Y   G  E+A  
Sbjct: 359 EVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADL 418

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM----PSKNIVSW----------- 174
           +F  +P K D   WN+++A +   G   +A  +L +M     S N V++           
Sbjct: 419 VFKQMPTK-DLISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPE 477

Query: 175 ------------------------NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLD 210
                                   N+++S Y K G M  + +    M  RDVV+WN ++ 
Sbjct: 478 FFDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIG 537

Query: 211 GYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARNGRMLEARRLFDQMPI----- 261
           GY E +D D A   FQ +  +    N ++ V++LS     G +LE  +      +     
Sbjct: 538 GYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFE 597

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
            +    N++I  Y + G +  +  LF  +  R+ ++W  ++         +E  +L+ +M
Sbjct: 598 SDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSKM 657

Query: 322 PYKNIAAQ----TAMISGYVQNKRMDEANQIFD---KIGTH-DVVCWNVMIKGYAQCGRM 373
               ++      +  +S   +   ++E  Q+     K+G   D   +N     Y++CG +
Sbjct: 658 RSFGLSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFELDCFIFNAAADMYSKCGEI 717

Query: 374 DEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433
            E + +    VN+ + +WN +I+   +    ++  + F E                    
Sbjct: 718 GEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCETFHE-------------------- 757

Query: 434 EFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS-GYVNDLFV 492
                       M + G K  H T    L+AC+H   +  G   + +  K  G    +  
Sbjct: 758 ------------MLEMGIKPGHVTFVSLLTACSHGGLVDQGLAYYDMIAKDFGLEPAIEH 805

Query: 493 GNSLITMYAKCGRIQNAELLFKD--ADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
              +I +  + GR+  AE         P D++ W SL+A   I+ +     K  E +
Sbjct: 806 CICVIDLLGRSGRLAEAETFISKMPMKPNDLV-WRSLLASCKIHRDLDRGRKAAENL 861



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 102/187 (54%), Gaps = 2/187 (1%)

Query: 381 RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
           + +V   ++  NT+I  Y +  ++  A  +F++M   RN VSWN ++SG ++   +L+ +
Sbjct: 86  KGLVRLSVLHTNTLINMYTKFGRVKPARYLFDKM-PVRNEVSWNTMMSGIVRVGLYLEGM 144

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAAL-QLGRQIHHLAIKSGYVNDLFVGNSLITM 499
           + F  M   G K     +A  ++AC    ++ + G Q+H    KSG ++D++V  +++ +
Sbjct: 145 EFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHL 204

Query: 500 YAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTF 559
           Y   G +  +  +F++    +V+SW SL+ GY+  G   E I +++ M  EGV  +  + 
Sbjct: 205 YGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSM 264

Query: 560 IGVLSAC 566
             V+S+C
Sbjct: 265 SLVISSC 271



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 49/97 (50%)

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           GR +H L +K      +   N+LI MY K GR++ A  LF      + +SWN++++G   
Sbjct: 77  GRALHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIVR 136

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
            G   E ++ F++M   G+ P       +++AC   G
Sbjct: 137 VGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSG 173


>gi|147833409|emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera]
          Length = 1796

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 193/620 (31%), Positives = 326/620 (52%), Gaps = 56/620 (9%)

Query: 114 MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS 173
           ++  Y+R   + +A++LF+ +P K +   WN M+ GY K G+  ++ +L D+MP K+  S
Sbjct: 48  LLQMYSRCNSMREAQQLFEEMP-KRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFS 106

Query: 174 WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI---PE 230
           WN ++SG+ K G + +A + F  M  ++ ++WN M+ GY        A   F+ +   P 
Sbjct: 107 WNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPL 166

Query: 231 Q----------NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQI 280
           +           VV   T L G    G+ + AR + D++   +V+  ++++  Y + G I
Sbjct: 167 ERFCGDTFVLATVVGACTNL-GALDCGKQIHARIVVDEVEFDSVLG-SSLVNLYGKCGDI 224

Query: 281 EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340
           + A  +   M E +  S + +I GY    ++++ARR+        +    +MISGYV N 
Sbjct: 225 DSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNXCVVLWNSMISGYVANN 284

Query: 341 RMDEANQIFD--------------------------------------KIG-THDVVCWN 361
              EA ++F+                                      K+G T+D++  +
Sbjct: 285 EALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDS 344

Query: 362 VMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
            ++  Y++C R D+A  LF  +   D +  N+MI  Y+   ++DDA +IF+ M   ++ +
Sbjct: 345 ALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTM-PSKSLI 403

Query: 422 SWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLA 481
           SWN++I GF QN   ++AL +F  M + G + D  +LA  +SACA +++L+LG QI   A
Sbjct: 404 SWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARA 463

Query: 482 IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
              G   D  +  SL+  Y KCG +++   LF      D + WNS++ GYA NG+  EA+
Sbjct: 464 TIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEAL 523

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601
            +F++M   GV P  +TF+GVLSAC H GLV+ G K F  M   Y I P +EHY+CM+DL
Sbjct: 524 NVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDL 583

Query: 602 LSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCY 661
            +RAG L++A  +++ M +K +  +W ++L  C  H N  LG+   +++ +L+P+ +  Y
Sbjct: 584 YARAGLLEDAMNLIEQMPLKADTSMWSSVLRGCVAHGNNILGKKVAKRIIDLDPENSGAY 643

Query: 662 ALLSNMHAEAGRWDEVEKVR 681
             LS ++A    W    +VR
Sbjct: 644 VQLSGIYATFEDWGRSAQVR 663



 Score =  316 bits (810), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 225/780 (28%), Positives = 389/780 (49%), Gaps = 78/780 (10%)

Query: 29   GRVEEAIKIFSQMSQKNTVT-----YNSMISAYAKNGRVNDARKLFEQMPQRNLVS-WNS 82
            G VEE  K F  M     +      Y+ M+  YA+ G + DA  L EQMP +   S W+S
Sbjct: 552  GLVEEGRKWFYAMKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMPLKADTSMWSS 611

Query: 83   MIAGYL-HNDKV---KEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
            ++ G + H + +   K A+ + D +   +  ++  +   Y    +  ++ ++  L+ +K+
Sbjct: 612  VLRGCVAHGNNILGKKVAKRIID-LDPENSGAYVQLSGIYATFEDWGRSAQVRKLMYDKK 670

Query: 139  DTACWNAMVAGYAKI-GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
                 +  +AG     G  +E K++      +N+V     L    K        KF  A 
Sbjct: 671  IPKDTSFDIAGEEGXEGLSSETKEVTKMKQRQNLVL---RLVAEKKRECDERDQKFMAA- 726

Query: 198  EERDVVSWNLM---------------LDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG 242
              R ++ ++++               LD Y +L   + + + F+ I ++N++SW   L  
Sbjct: 727  -RRTLLEFDMLIKVGFNTHTFLGNRCLDLYSQLGTGNDSLRVFEDIIDKNLISWNIFLKA 785

Query: 243  YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWT- 299
            + R G +  AR +FD+MP R+VV+WN MI+ YV  G  ++A R F EM +    P  +T 
Sbjct: 786  FVRFGELERARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTY 845

Query: 300  TMIDGYVRIA---KLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHD 356
            + +  +V  A   K   A  + + +   N+    ++I  Y +   +D A  +F  +   D
Sbjct: 846  STLLSFVSSACRGKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITMEELD 905

Query: 357  VVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAG--------------- 397
            ++ WN +I    + G  + A+  F  M     + D  T +T+I                 
Sbjct: 906  IISWNSLIWSCGKSGYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIFA 965

Query: 398  --------------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHL 437
                                +++  +++D+V++FEE+  + ++V  NA+IS +  + F  
Sbjct: 966  LCIRVGFLSNSIVSSASIDLFSKCNRLEDSVRVFEEI-YQWDSVLCNAMISSYAWHGFGE 1024

Query: 438  DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
            +AL++FVL  +E  +    TL+  LSA + L  +  G QIH L +KSG  +D+ V +SL+
Sbjct: 1025 NALQLFVLTLRENLRPTEFTLSIVLSAVSILLPVDQGSQIHSLVVKSGLESDVIVASSLV 1084

Query: 498  TMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
             MYAK G I +A   F      D+ISWN++I G A NG  ++A+++F+E+++ G  PD +
Sbjct: 1085 EMYAKFGLIDSAMKTFAKIGARDLISWNTMIMGLAYNGRVSKALEIFKELLIGGPPPDEI 1144

Query: 558  TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKG 617
            T  GVL AC+  GLVD GL +F  M + Y + P +EHYAC++D++SR G+L EA ++V+ 
Sbjct: 1145 TLAGVLLACNVGGLVDEGLSIFSSMEKEYGVIPAIEHYACIVDMMSRGGKLKEAMDIVEL 1204

Query: 618  MKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEV 677
            M  +P+  IWG+LL AC ++ +++      E++ ELEPQ +  Y +L+  +   GRW+ +
Sbjct: 1205 MPHEPSGLIWGSLLCACEIYGDLRFTERVAERVMELEPQSSLPYLVLAQAYEMRGRWESL 1264

Query: 678  EKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNTPLA 737
             +V  +M+  G +K  GCSWI +KN +  F           +I   L+ L  +I +   A
Sbjct: 1265 VRVXRAMKEKGVRKVIGCSWIGIKNHVFVFKENQLLHIGGKDIYFILRLLIQEIEDDGYA 1324



 Score =  229 bits (584), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 176/651 (27%), Positives = 318/651 (48%), Gaps = 73/651 (11%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K  R ++A K+FS +   +T+  NSMI+ Y+  GR++DAR++F+ MP ++L+SWNSMI G
Sbjct: 352 KCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVG 411

Query: 87  YLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELF---DLLPNKED 139
           +  N    EA +LF +M     R D FS A +I+       LE   ++F    ++  + D
Sbjct: 412 FSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFD 471

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE 199
                ++V  Y K G     +KL D M   + V WNSML GY  NG    A   F+ M  
Sbjct: 472 QIISTSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRS 531

Query: 200 RDVVSWNLMLDGYVELDD----LDSAWKFFQKIP-----EQNVVSWVTMLSGYARNGRML 250
             V   ++   G +   D    ++   K+F  +         +  +  M+  YAR G + 
Sbjct: 532 VGVQPTDITFVGVLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDLYARAGLLE 591

Query: 251 EARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTTMIDGYV 306
           +A  L +QMP++ +   W++++   V  G     ++ A+  I++   N  ++  +   Y 
Sbjct: 592 DAMNLIEQMPLKADTSMWSSVLRGCVAHGNNILGKKVAKRIIDLDPENSGAYVQLSGIYA 651

Query: 307 RI---AKLDEARRLL--DQMP------------YKNIAAQTAMISGYVQNKRM------- 342
                 +  + R+L+   ++P             + ++++T  ++   Q + +       
Sbjct: 652 TFEDWGRSAQVRKLMYDKKIPKDTSFDIAGEEGXEGLSSETKEVTKMKQRQNLVLRLVAE 711

Query: 343 -----DEANQIF-------------DKIG--THDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
                DE +Q F              K+G  TH  +  N  +  Y+Q G  ++++ +F  
Sbjct: 712 KKRECDERDQKFMAARRTLLEFDMLIKVGFNTHTFL-GNRCLDLYSQLGTGNDSLRVFED 770

Query: 383 MVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI 442
           +++K++++WN  +  + +  +++ A  +F+EM K R+ VSWN +ISG++      DA + 
Sbjct: 771 IIDKNLISWNIFLKAFVRFGELERARDVFDEMPK-RDVVSWNTMISGYVSFGLFDDAFRF 829

Query: 443 FVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY-VNDLFVGNSLITMYA 501
           F  M + G +    T +  LS    +++   G+QIH   I++G  ++++ VGNSLI MY 
Sbjct: 830 FSEMQKAGIRPSGFTYSTLLS---FVSSACRGKQIHASMIRNGVDLSNVVVGNSLIGMYG 886

Query: 502 KCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIG 561
           K G +  A  +F   + +D+ISWNSLI     +G    A++ F  M   G +PD  T   
Sbjct: 887 KFGVVDYAFGVFITMEELDIISWNSLIWSCGKSGYQNLALRQFVLMRSVGYSPDQFTVST 946

Query: 562 VLSACSHVGLVDGGLKLFE-CMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
           V++ CS++  ++ G ++F  C+   +    +V   +  IDL S+  RL+++
Sbjct: 947 VITVCSNLQDLEKGEQIFALCIRVGFLSNSIVS--SASIDLFSKCNRLEDS 995



 Score =  179 bits (453), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 145/580 (25%), Positives = 257/580 (44%), Gaps = 91/580 (15%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F+ N  I    KSG   +++++F  M  K+  ++N +IS +AK G +  AR+LF +MP +
Sbjct: 74  FSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFNEMPWK 133

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKM-------FRPDLFSWALMITCYTRKGELEKAR 128
           N ++WNSMI GY  N + KEA  LF  +       F  D F  A ++   T  G L+  +
Sbjct: 134 NGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGK 193

Query: 129 ELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
           ++   +   E   D+   +++V  Y K G+ + A  +L+ M   +  S ++++SGY   G
Sbjct: 194 QIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCG 253

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFF----QKIPEQNVVSWVTMLS 241
            M+ A + F       VV WN M+ GYV  ++   A + F    +K  +++  ++ ++LS
Sbjct: 254 RMNDARRIFCLKSNXCVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLS 313

Query: 242 G-----------------------------------YARNGRMLEARRLFDQMPIRNVVA 266
                                               Y++  R  +A +LF  +   + + 
Sbjct: 314 ACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTIL 373

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
            N+MI  Y   G+I++A ++F  MP ++ +SW +MI G+ + A   EA  L  +M    +
Sbjct: 374 LNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGL 433

Query: 327 AAQTAMISGYVQN----KRMDEANQIFDK---IGTH-DVVCWNVMIKGYAQCGRMDEAIN 378
                 ++G +        ++   QIF +   IG   D +    ++  Y +CG ++    
Sbjct: 434 RMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHGRK 493

Query: 379 LFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
           LF +M+  D V WN+M+ GYA                                 N   ++
Sbjct: 494 LFDRMMKSDEVPWNSMLMGYA--------------------------------TNGHGIE 521

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS-LI 497
           AL +F  M   G +    T    LSAC H   ++ GR+  +      ++N      S ++
Sbjct: 522 ALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMV 581

Query: 498 TMYAKCGRIQNAELLFKDAD-PVDVISWNSLIAGYAINGN 536
            +YA+ G +++A  L +      D   W+S++ G   +GN
Sbjct: 582 DLYARAGLLEDAMNLIEQMPLKADTSMWSSVLRGCVAHGN 621



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 108/482 (22%), Positives = 223/482 (46%), Gaps = 37/482 (7%)

Query: 13   SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
            ++ F  N+ +    + G   +++++F  +  KN +++N  + A+ + G +  AR +F++M
Sbjct: 743  THTFLGNRCLDLYSQLGTGNDSLRVFEDIIDKNLISWNIFLKAFVRFGELERARDVFDEM 802

Query: 73   PQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMIT-----CYTRKGE 123
            P+R++VSWN+MI+GY+      +A   F +M     RP  F+++ +++     C  ++  
Sbjct: 803  PKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAGIRPSGFTYSTLLSFVSSACRGKQIH 862

Query: 124  LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK 183
                R   DL     +    N+++  Y K G  + A  +   M   +I+SWNS++    K
Sbjct: 863  ASMIRNGVDL----SNVVVGNSLIGMYGKFGVVDYAFGVFITMEELDIISWNSLIWSCGK 918

Query: 184  NGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTM 239
            +G  +LA + F  M       D  + + ++     L DL+   + F        +S   +
Sbjct: 919  SGYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIFALCIRVGFLSNSIV 978

Query: 240  LSG----YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN- 294
             S     +++  R+ ++ R+F+++   + V  NAMI++Y   G  E A +LF+     N 
Sbjct: 979  SSASIDLFSKCNRLEDSVRVFEEIYQWDSVLCNAMISSYAWHGFGENALQLFVLTLRENL 1038

Query: 295  -PVSWT--TMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347
             P  +T   ++     +  +D+  ++    +      ++   ++++  Y +   +D A +
Sbjct: 1039 RPTEFTLSIVLSAVSILLPVDQGSQIHSLVVKSGLESDVIVASSLVEMYAKFGLIDSAMK 1098

Query: 348  IFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV----NKDIVTWNTMIAGYAQIRQ 403
             F KIG  D++ WN MI G A  GR+ +A+ +F++++      D +T   ++        
Sbjct: 1099 TFAKIGARDLISWNTMIMGLAYNGRVSKALEIFKELLIGGPPPDEITLAGVLLACNVGGL 1158

Query: 404  MDDAVKIFEEMGKRRNTVS----WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
            +D+ + IF  M K    +     +  ++    +     +A+ I  LM  E       +L 
Sbjct: 1159 VDEGLSIFSSMEKEYGVIPAIEHYACIVDMMSRGGKLKEAMDIVELMPHEPSGLIWGSLL 1218

Query: 460  CA 461
            CA
Sbjct: 1219 CA 1220



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 163/353 (46%), Gaps = 34/353 (9%)

Query: 1    MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
            + AS+   G   S V   N  I   GK G V+ A  +F  M + + +++NS+I +  K+G
Sbjct: 861  IHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYAFGVFITMEELDIISWNSLIWSCGKSG 920

Query: 61   RVNDARKLFEQM------PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALM 114
              N A + F  M      P +  VS    +   L +  +++  ++F    R    S +++
Sbjct: 921  YQNLALRQFVLMRSVGYSPDQFTVSTVITVCSNLQD--LEKGEQIFALCIRVGFLSNSIV 978

Query: 115  ----ITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN 170
                I  +++   LE +  +F+ +   +   C NAM++ YA  G    A +L      +N
Sbjct: 979  SSASIDLFSKCNRLEDSVRVFEEIYQWDSVLC-NAMISSYAWHGFGENALQLFVLTLREN 1037

Query: 171  ----------IVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
                      ++S  S+L    +  ++H  S   ++  E DV+  + +++ Y +   +DS
Sbjct: 1038 LRPTEFTLSIVLSAVSILLPVDQGSQIH--SLVVKSGLESDVIVASSLVEMYAKFGLIDS 1095

Query: 221  AWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM----PIRNVVAWNAMIAAYVQ 276
            A K F KI  ++++SW TM+ G A NGR+ +A  +F ++    P  + +    ++ A   
Sbjct: 1096 AMKTFAKIGARDLISWNTMIMGLAYNGRVSKALEIFKELLIGGPPPDEITLAGVLLACNV 1155

Query: 277  RGQIEEAARLFIEMPERNPV-----SWTTMIDGYVRIAKLDEARRLLDQMPYK 324
             G ++E   +F  M +   V      +  ++D   R  KL EA  +++ MP++
Sbjct: 1156 GGLVDEGLSIFSSMEKEYGVIPAIEHYACIVDMMSRGGKLKEAMDIVELMPHE 1208



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 117/241 (48%), Gaps = 29/241 (12%)

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND-LFVGNSLITMYAKCGRIQNAELL 512
           D  +LA  L +C +  ++  GR +H L +KSG ++  L +GN L+ MY++C  ++ A+ L
Sbjct: 5   DLHSLARQLGSCNNYGSIYRGRXLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQL 64

Query: 513 FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
           F++    +  SWN++I GY  +G+  ++++LF+ M  +    D  ++  V+S  +  G +
Sbjct: 65  FEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHK----DAFSWNVVISGFAKEGNL 120

Query: 573 DGGLKLFECMTEVYAI--EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKP------NA 624
           +   +LF  M     I    ++  YAC        GR  EA  + K + + P      + 
Sbjct: 121 EVARRLFNEMPWKNGIAWNSMIHGYAC-------NGRPKEAVGLFKDLSLNPLERFCGDT 173

Query: 625 GIWGTLLGACRMHQNIKLG-----RIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEK 679
            +  T++GAC     +  G     RI V+++ E +    S    L N++ + G  D    
Sbjct: 174 FVLATVVGACTNLGALDCGKQIHARIVVDEV-EFDSVLGSS---LVNLYGKCGDIDSANH 229

Query: 680 V 680
           V
Sbjct: 230 V 230


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 188/556 (33%), Positives = 294/556 (52%), Gaps = 50/556 (8%)

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP----IRNVVAWNA 269
             D L  A   F  I E N++ W TM  G+A +   + A  L+  M     + N   +  
Sbjct: 49  HFDGLTYAISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPF 108

Query: 270 MIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           ++ A  +     E  ++   +     + +    T++I  YV+  + ++AR++ DQ  +++
Sbjct: 109 LLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRD 168

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-- 383
           + + TA+I GY  N  +  A ++FD+I   DVV WN +I GYA+ G   EA+ LF++M  
Sbjct: 169 VVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMK 228

Query: 384 ------------------------VNKDIVTW-------------NTMIAGYAQIRQMDD 406
                                   + + + +W             N +I  Y +  +++ 
Sbjct: 229 TNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVET 288

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
           A  +FE +   ++ +SWN LI G+     + +AL +F  M + G+  +  T+   L ACA
Sbjct: 289 ASGLFEGL-SYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACA 347

Query: 467 HLAALQLGRQIHHLAIK--SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
           HL A+ +GR IH    K   G  N   +  SLI MYAKCG I+ A+ +F       + SW
Sbjct: 348 HLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSW 407

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           N++I G+A++G A  A  +F  M  +G+ PD +TF+G+LSACSH G++D G  +F  MTE
Sbjct: 408 NAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTE 467

Query: 585 VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
            Y I P +EHY CMIDLL  +G   EA EM+  M++ P+  IW +LL AC+MH N++LG 
Sbjct: 468 DYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGE 527

Query: 645 IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQI 704
              + L ++EP+ +  Y LLSN++A AGRW+EV K R  +   G +K PGCS IE+ + +
Sbjct: 528 SFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVV 587

Query: 705 HTFLSGDPKQCRTAEI 720
           H F+ GD    R  EI
Sbjct: 588 HEFIIGDKLHPRNREI 603



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 124/507 (24%), Positives = 208/507 (41%), Gaps = 92/507 (18%)

Query: 89  HNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF------DLLPNKE---- 138
           H D +  A  +FD +  P+L  W  M   +    +   A  L+       L+PN      
Sbjct: 49  HFDGLTYAISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPF 108

Query: 139 ----------------------------DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN 170
                                       D     +++A Y K G   +A+K+ D    ++
Sbjct: 109 LLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRD 168

Query: 171 IVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPE 230
           +VS+ +++ GY  NG +  A K F+ +  +DVVSWN ++ GY E  +   A + F+++ +
Sbjct: 169 VVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMK 228

Query: 231 QNV----VSWVTMLSGYARNGRMLEARRLF----DQMPIRNVVAWNAMIAAYVQRGQIEE 282
            NV     + VT+LS  A++  +   R++     D     N+   NA+I  Y++ G++E 
Sbjct: 229 TNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVET 288

Query: 283 AARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM----PYKNIAAQTAMISGYVQ 338
           A+ LF  +  ++ +SW T+I GY  +    EA  L  +M       N     +++     
Sbjct: 289 ASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAH 348

Query: 339 NKRMDEANQIFDKIG------THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWN 392
              +D    I   I       ++       +I  YA+CG ++ A  +F  M+N+ + +WN
Sbjct: 349 LGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWN 408

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
            MI G+A              M  R N                   A  IF  M ++G +
Sbjct: 409 AMIFGFA--------------MHGRANP------------------AFDIFSRMRKDGIE 436

Query: 453 ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN-DLFVGNSLITMYAKCGRIQNAEL 511
            D  T    LSAC+H   L LGR I     +   +   L     +I +    G  + AE 
Sbjct: 437 PDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEE 496

Query: 512 LFK--DADPVDVISWNSLIAGYAINGN 536
           +    + DP  VI W SL+    ++GN
Sbjct: 497 MINSMEMDPDGVI-WCSLLKACKMHGN 522



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 157/317 (49%), Gaps = 23/317 (7%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K+GR E+A K+F Q S ++ V+Y ++I  YA NG +  A+K+F+++P +++VSWN++I+G
Sbjct: 150 KNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISG 209

Query: 87  YLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDLLPNK---ED 139
           Y      KEA ELF +M     +PD  +   +++   +   +E  R++   + +     +
Sbjct: 210 YAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSN 269

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM-- 197
               NA++  Y K G    A  L + +  K+++SWN+++ GYT       A   F+ M  
Sbjct: 270 LKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLR 329

Query: 198 --EERDVVSWNLMLDGYVELDDLD-SAW------KFFQKIPEQNVVSWVTMLSGYARNGR 248
             E  + V+   +L     L  +D   W      K  + +   + +   +++  YA+ G 
Sbjct: 330 SGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLR-TSLIDMYAKCGD 388

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDG 304
           +  A+++FD M  R++ +WNAMI  +   G+   A  +F  M     E + +++  ++  
Sbjct: 389 IEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSA 448

Query: 305 YVRIAKLDEARRLLDQM 321
                 LD  R +   M
Sbjct: 449 CSHSGMLDLGRHIFRSM 465



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 107/462 (23%), Positives = 205/462 (44%), Gaps = 71/462 (15%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL----- 88
           AI +F  + + N + +N+M   +A +     A  L+  M    LV  NS    +L     
Sbjct: 56  AISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVP-NSYTFPFLLKACA 114

Query: 89  HNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWN 144
            +   +E +++   + +     DL+    +I  Y + G  E AR++FD   ++ D   + 
Sbjct: 115 KSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHR-DVVSYT 173

Query: 145 AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE----- 199
           A++ GYA  G    A+K+ D +P K++VSWN+++SGY + G    A + F+ M +     
Sbjct: 174 ALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKP 233

Query: 200 ---------------------RDVVSW-------------NLMLDGYVELDDLDSAWKFF 225
                                R V SW             N ++D Y++  ++++A   F
Sbjct: 234 DESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLF 293

Query: 226 QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-----NVVAWNAMIAAYVQRGQI 280
           + +  ++V+SW T++ GY       EA  LF +M +R     N V   +++ A    G I
Sbjct: 294 EGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEM-LRSGESPNEVTMLSILPACAHLGAI 352

Query: 281 EEAARLFIEMPER-----NPVSW-TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMIS 334
           +    + + + +R     NP S  T++ID Y +   ++ A+++ D M  +++++  AMI 
Sbjct: 353 DIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIF 412

Query: 335 GYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
           G+  + R + A  IF ++       D + +  ++   +  G +D   ++FR M     +T
Sbjct: 413 GFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKIT 472

Query: 391 -----WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
                +  MI          +A ++   M    + V W +L+
Sbjct: 473 PKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLL 514



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 12/160 (7%)

Query: 5   LKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND 64
           LK + N  S    +   I    K G +E A ++F  M  ++  ++N+MI  +A +GR N 
Sbjct: 366 LKGVSNPSSL---RTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANP 422

Query: 65  ARKLFEQMPQRNL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMI 115
           A  +F +M +  +    +++  +++   H+  +   R +F  M       P L  +  MI
Sbjct: 423 AFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMI 482

Query: 116 TCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGN 155
                 G  ++A E+ + +    D   W +++      GN
Sbjct: 483 DLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGN 522


>gi|22293716|dbj|BAC10060.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
          Length = 631

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 180/487 (36%), Positives = 268/487 (55%), Gaps = 33/487 (6%)

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKL 311
           AR++FD+M  R+VV+WN+++  Y+  G    A   F  MPERN VSW T++ G+ R+  +
Sbjct: 170 ARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDM 229

Query: 312 DEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
             AR + D+MP +N  +   MISGY  +  ++ A  +FD++   DVV W  M+  YA+ G
Sbjct: 230 VTARAVFDRMPSRNAVSWNLMISGYAMSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIG 289

Query: 372 RMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFL 431
            +D    LF  M  K++V+WN MI GY    + D+A++ F+                   
Sbjct: 290 DLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQ------------------- 330

Query: 432 QNEFHLDALKIFVLMTQEGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
                        LM  EG+ + D +TL   +SACA L +++    I     KS     +
Sbjct: 331 -------------LMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNIHLTV 377

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME 550
            +GN+LI M+AKCG +  AE +F   +   +I+W ++I+G+A NG   +A+ ++  M  E
Sbjct: 378 ALGNALIDMFAKCGDVGRAESIFYKMETRCIITWTTMISGFAFNGLCRDALLVYNNMCRE 437

Query: 551 GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDE 610
           GV  D   FI  L+AC+H GL+  G  +F  M E Y I+P +EHY CM+DLL RAG L E
Sbjct: 438 GVQLDDTVFIAALAACAHGGLLQEGWSIFNEMVERYNIQPRMEHYGCMVDLLGRAGNLQE 497

Query: 611 AFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAE 670
           A   ++ M ++P+  IW TLL +C  H N +L     +K++ELEP  +S   L+SN  A 
Sbjct: 498 AILFIESMPLEPSVVIWVTLLCSCVAHGNAELIEYVSKKITELEPFNSSYQVLVSNCSAL 557

Query: 671 AGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQ 730
            GRWD V   R SM   G +K PG S I+V +++H FL+ D +  R  EI  T+  L A 
Sbjct: 558 EGRWDGVIDARTSMRNWGIEKVPGSSSIQVGSEVHEFLAKDTRHKRRKEIYETVDGLMAL 617

Query: 731 IRNTPLA 737
           +R+T  A
Sbjct: 618 MRHTEQA 624



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 129/421 (30%), Positives = 206/421 (48%), Gaps = 78/421 (18%)

Query: 190 ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRM 249
           A + F+ M +RDVVSWN ++  Y+   D   A  FF+ +PE+NVVSW T+++G+AR G M
Sbjct: 170 ARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDM 229

Query: 250 LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIA 309
           + AR +FD+MP RN V+WN MI+ Y   G +E A  +F  M +++ VSWT M+  Y +I 
Sbjct: 230 VTARAVFDRMPSRNAVSWNLMISGYAMSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIG 289

Query: 310 KLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD------------------- 350
            LD    L D MP KN+ +  AMI+GY  N R DEA + F                    
Sbjct: 290 DLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVV 349

Query: 351 ----KIGTHDVVCW-----------------NVMIKGYAQCGRMDEAINLFRQMVNKDIV 389
               ++G+ +   W                 N +I  +A+CG +  A ++F +M  + I+
Sbjct: 350 SACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAESIFYKMETRCII 409

Query: 390 TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
           TW TMI+G+A                       +N L           DAL ++  M +E
Sbjct: 410 TWTTMISGFA-----------------------FNGLCR---------DALLVYNNMCRE 437

Query: 450 GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG-NSLITMYAKCGRIQN 508
           G + D +    AL+ACAH   LQ G  I +  ++   +         ++ +  + G +Q 
Sbjct: 438 GVQLDDTVFIAALAACAHGGLLQEGWSIFNEMVERYNIQPRMEHYGCMVDLLGRAGNLQE 497

Query: 509 AELLFKDADPVD--VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
           A +LF ++ P++  V+ W +L+     +GNA E I+   + + E + P   ++  ++S C
Sbjct: 498 A-ILFIESMPLEPSVVIWVTLLCSCVAHGNA-ELIEYVSKKITE-LEPFNSSYQVLVSNC 554

Query: 567 S 567
           S
Sbjct: 555 S 555



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/340 (30%), Positives = 171/340 (50%), Gaps = 50/340 (14%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKV 93
           A ++F +M  ++ V++NS++  Y  +G    A   FE MP+RN+VSWN+++AG+     +
Sbjct: 170 ARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFARMGDM 229

Query: 94  KEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKI 153
             AR +FD+M   +  SW LMI+ Y   G++E AR +FD + +++D   W AMV+ YAKI
Sbjct: 230 VTARAVFDRMPSRNAVSWNLMISGYAMSGDVEAARSVFDRM-DQKDVVSWTAMVSAYAKI 288

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM--------EERDVVS- 204
           G+ +   +L D MP KN+VSWN+M++GY  N     A + F+ M        +E  +VS 
Sbjct: 289 GDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSV 348

Query: 205 --------------W-----------------NLMLDGYVELDDLDSAWKFFQKIPEQNV 233
                         W                 N ++D + +  D+  A   F K+  + +
Sbjct: 349 VSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAESIFYKMETRCI 408

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIE 289
           ++W TM+SG+A NG   +A  +++ M    V      + A +AA    G ++E   +F E
Sbjct: 409 ITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWSIFNE 468

Query: 290 MPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQMPYK 324
           M ER  +      +  M+D   R   L EA   ++ MP +
Sbjct: 469 MVERYNIQPRMEHYGCMVDLLGRAGNLQEAILFIESMPLE 508



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 5/104 (4%)

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
           +G   +  T    L ACA L   +    +H   ++ G+ +D+FV N+L+ +Y +CG    
Sbjct: 105 QGVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYHRCGGGGG 164

Query: 509 -----AELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
                A  +F +    DV+SWNS++  Y  +G+AT A+  FE M
Sbjct: 165 GGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAM 208


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 186/562 (33%), Positives = 308/562 (54%), Gaps = 16/562 (2%)

Query: 183 KNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG 242
           K  + H+    F+     D    N +L  Y +   L  A   F K+ ++++ SW  +LS 
Sbjct: 42  KRLQSHMEHHLFQPT---DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSA 98

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWT- 299
           YA++G +   +  FD+MP R+ V++N  IA +      +E+  LF  M      P  +T 
Sbjct: 99  YAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTI 158

Query: 300 -TMIDGYVRIAKLDEARRLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFDKIGT 354
            ++++   +++ L   +++   +  +N         A+   Y +   +++A  +FD +  
Sbjct: 159 VSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTK 218

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMV----NKDIVTWNTMIAGYAQIRQMDDAVKI 410
            ++V WN+MI GYA+ G+ ++ I L  QM       D VT +T+IA Y Q  ++D+A ++
Sbjct: 219 KNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRV 278

Query: 411 FEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAA 470
           F E  K ++ V W A++ G+ +N    DAL +F  M  E  + D  TL+  +S+CA LA+
Sbjct: 279 FSEF-KEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLAS 337

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
           L  G+ +H  +I +G  N+L V ++LI MY+KCG I +A  +F      +V+SWN++I G
Sbjct: 338 LHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVG 397

Query: 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP 590
            A NG+  +A++LFE M+ +   PD VTFIG+LSAC H   ++ G + F+ +T  + + P
Sbjct: 398 CAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTP 457

Query: 591 LVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL 650
            ++HYACM++LL R GR+++A  ++K M   P+  IW TLL  C    +I    +A   L
Sbjct: 458 TLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHL 517

Query: 651 SELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSG 710
            EL+P     Y +LSNM+A  GRW +V  VR  M+    +K  G SWIE+ N++H F S 
Sbjct: 518 FELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSE 577

Query: 711 DPKQCRTAEICNTLKTLAAQIR 732
           D     + +I   L  L  +++
Sbjct: 578 DRTHPESEDIYEKLNMLIGKLQ 599



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/443 (25%), Positives = 222/443 (50%), Gaps = 32/443 (7%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F  N+ +    K G++ +A  +F +M +++  ++N+++SAYAK+G + + +  F++MP R
Sbjct: 59  FLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFR 118

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELF 131
           + VS+N+ IAG+  N   +E+ ELF +M    F P  ++   ++    +  +L   +++ 
Sbjct: 119 DSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIH 178

Query: 132 DLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
             +  +    +   WNA+   YAK G   +A+ L D +  KN+VSWN M+SGY KNG+  
Sbjct: 179 GSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPE 238

Query: 189 LASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYA 244
                   M       D V+ + ++  Y +   +D A + F +  E+++V W  M+ GYA
Sbjct: 239 KCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYA 298

Query: 245 RNGRMLEARRLFDQM----------PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
           +NGR  +A  LF++M           + +VV+  A +A+ +  GQ      +   +    
Sbjct: 299 KNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLAS-LHHGQAVHGKSILAGLNNNL 357

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
            VS + +ID Y +   +D+AR + + MP +N+ +  AMI G  QN    +A ++F+ +  
Sbjct: 358 LVS-SALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQ 416

Query: 355 H----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT-----WNTMIAGYAQIRQMD 405
                D V +  ++     C  +++    F  + N+  +T     +  M+    +  +++
Sbjct: 417 QKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIE 476

Query: 406 DAVKIFEEMGKRRNTVSWNALIS 428
            AV + + M    + + W+ L+S
Sbjct: 477 QAVALIKNMAHDPDFLIWSTLLS 499



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 133/523 (25%), Positives = 243/523 (46%), Gaps = 97/523 (18%)

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM----FRP-DLFSWALMITCYTRKGELEKARELFDL 133
           ++  ++   +  +++ +A+ L   M    F+P D F    ++  Y + G+L  A+ LFD 
Sbjct: 24  AYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDK 83

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
           +  K D   WNA+++ YAK G+    K   D MP ++ VS+N+ ++G++ N     + + 
Sbjct: 84  ML-KRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLEL 142

Query: 194 FEAME-------ERDVVS--------------------------------WNLMLDGYVE 214
           F+ M+       E  +VS                                WN + D Y +
Sbjct: 143 FKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAK 202

Query: 215 LDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGR------MLEARRLFDQMPIRNVVAWN 268
             +++ A   F  + ++N+VSW  M+SGYA+NG+      +L   RL   MP  + V  +
Sbjct: 203 CGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMP--DQVTMS 260

Query: 269 AMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA 328
            +IAAY Q G+++EA R+F E  E++ V WT M+ GY +  + ++A  L ++M  ++I  
Sbjct: 261 TIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEP 320

Query: 329 QTAMISGYVQN----KRMDEANQIFDKI----GTHDVVCWNVMIKGYAQCGRMDEAINLF 380
            +  +S  V +      +     +  K       ++++  + +I  Y++CG +D+A ++F
Sbjct: 321 DSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVF 380

Query: 381 RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
             M  +++V+WN MI G AQ     DA+++FE M                LQ +F     
Sbjct: 381 NLMPTRNVVSWNAMIVGCAQNGHDKDALELFENM----------------LQQKF----- 419

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ-IHHLAIKSGYVNDLFVGNSLITM 499
                      K D+ T    LSAC H   ++ G++    +  + G    L     ++ +
Sbjct: 420 -----------KPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNL 468

Query: 500 YAKCGRIQNAELLFKD--ADPVDVISWNSLIAGYAINGNATEA 540
             + GRI+ A  L K+   DP D + W++L++  +  G+   A
Sbjct: 469 LGRTGRIEQAVALIKNMAHDP-DFLIWSTLLSICSTKGDIVNA 510



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 97/437 (22%), Positives = 188/437 (43%), Gaps = 81/437 (18%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F+ N  ++   KSG ++     F +M  +++V+YN+ I+ ++ N    ++ +LF++M +
Sbjct: 89  IFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQR 148

Query: 75  R---------------------------------------NLVSWNSMIAGYLHNDKVKE 95
                                                   N+  WN++   Y    ++++
Sbjct: 149 EGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQ 208

Query: 96  ARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD---LLPNKEDTACWNAMVAGYAK 152
           AR LFD + + +L SW LMI+ Y + G+ EK   L     L  +  D    + ++A Y +
Sbjct: 209 ARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQ 268

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLM 208
            G  +EA+++      K+IV W +M+ GY KNG    A   F  M     E D  + + +
Sbjct: 269 CGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSV 328

Query: 209 LDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV 264
           +    +L  L        K        N++    ++  Y++ G + +AR +F+ MP RNV
Sbjct: 329 VSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNV 388

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQ 320
           V+WNAMI    Q G  ++A  LF  M ++    + V++  ++   +    +++ +   D 
Sbjct: 389 VSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDS 448

Query: 321 MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF 380
           +   N    T  +  Y                          M+    + GR+++A+ L 
Sbjct: 449 IT--NQHGMTPTLDHYA------------------------CMVNLLGRTGRIEQAVALI 482

Query: 381 RQMV-NKDIVTWNTMIA 396
           + M  + D + W+T+++
Sbjct: 483 KNMAHDPDFLIWSTLLS 499



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 43/193 (22%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL---- 77
           I    K G +++A  +F+ M  +N V++N+MI   A+NG   DA +LFE M Q+      
Sbjct: 364 IDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDN 423

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFD 132
           V++  +++  LH + +++ +E FD +       P L  +A M+    R G +E+A  L  
Sbjct: 424 VTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIK 483

Query: 133 LLPNKEDTACW--------------NAMVAG--------------------YAKIGNYNE 158
            + +  D   W              NA VA                     YA +G + +
Sbjct: 484 NMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKD 543

Query: 159 AKKLLDAMPSKNI 171
              + + M SKN+
Sbjct: 544 VASVRNLMKSKNV 556


>gi|345505210|gb|AEN99829.1| chlororespiratory reduction 4, partial [Barbarea verna]
          Length = 588

 Score =  338 bits (867), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 191/545 (35%), Positives = 303/545 (55%), Gaps = 23/545 (4%)

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRM 249
           F   E  D   WN ++  +    D   A  +F  + E  V     S   +L   +R G +
Sbjct: 53  FAHGEVEDPFLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFV 112

Query: 250 LEARRLFDQMPIRNVVAW------NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMID 303
            E  ++   +  R    W      N +I  Y++ G +  A ++F  MP+R+ VS+ +MID
Sbjct: 113 QEGMQIHGFL--RKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMID 170

Query: 304 GYVRIAKLDEARRLLDQMP--YKNIAAQTAMISGYVQNKR-MDEANQIFDKIGTHDVVCW 360
           GYV+   +  AR L D MP   KN+ +  +MISGY Q    ++ A+++F ++   D++ W
Sbjct: 171 GYVKCGLIGSARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISW 230

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
           N +I GY + GRM++A +LF  M  +D+VTW TMI GYA++  +  A  +F++M   R+ 
Sbjct: 231 NSLIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQM-PHRDV 289

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGK-KADHSTLACALSACAHLAALQLGRQIHH 479
           V++N++++G++QN+++++AL+IF  M +E     D +TL   LSA A L  L     +H 
Sbjct: 290 VAYNSMMAGYVQNKYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHL 349

Query: 480 LAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATE 539
             ++  +     +G +LI MY+KCG IQ A L+F+  +   +  WN++I G AI+G    
Sbjct: 350 YIVEKQFFLGGKLGVALIDMYSKCGSIQQAMLVFERIENKSIDHWNAMIGGLAIHGLGES 409

Query: 540 AIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMI 599
           A  +  E+    + PD +TF+G+L+ACSH GLV  GL  FE M   + IEP ++HY CM+
Sbjct: 410 AFDMLLEIERRSIKPDDITFVGILNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMV 469

Query: 600 DLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTS 659
           D+LSR+G ++ A  +++ M ++PN  IW T L AC  H+  + G +  + L        S
Sbjct: 470 DILSRSGSIELAKNLIEEMPMEPNDVIWRTFLTACSHHKEFETGEVVAKHLILQAGYNPS 529

Query: 660 CYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAE 719
            Y LLSNM+A  G W +  +VR  M+    QK PGCSWIE+  ++H F         + E
Sbjct: 530 SYVLLSNMYASFGMWKDARRVRTMMKERELQKVPGCSWIELDGRVHEFF------VDSIE 583

Query: 720 ICNTL 724
           + NTL
Sbjct: 584 VSNTL 588



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 143/468 (30%), Positives = 227/468 (48%), Gaps = 97/468 (20%)

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           DLF    +I  Y + G L  AR++FD +P + D+  +N+M+ GY K G    A++L D M
Sbjct: 130 DLFLQNCLIGLYLKCGCLGFARQIFDRMPQR-DSVSYNSMIDGYVKCGLIGSARELFDLM 188

Query: 167 PS--KNIVSWNSMLSGYTKNGE-MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWK 223
           P   KN++SWNSM+SGY +  + +++ASK F  M E+D++SWN ++DGYV+   ++ A  
Sbjct: 189 PKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKHGRMEDAKD 248

Query: 224 FFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEA 283
            F  +P ++VV+W TM+ GYA+ G + +A+ LFDQMP R+VVA+N+M+A YVQ     EA
Sbjct: 249 LFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYNMEA 308

Query: 284 ARLFIEMPERNPVS--WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKR 341
             +F +M + + +S   TT++     IA+L    + +D   Y  I  +   + G      
Sbjct: 309 LEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLY--IVEKQFFLGG------ 360

Query: 342 MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQI 401
                    K+G         +I  Y++CG + +A+ +F ++ NK I  WN MI G A  
Sbjct: 361 ---------KLGV-------ALIDMYSKCGSIQQAMLVFERIENKSIDHWNAMIGGLA-- 402

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
                                    I G  ++ F      + + + +   K D  T    
Sbjct: 403 -------------------------IHGLGESAF-----DMLLEIERRSIKPDDITFVGI 432

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC-GRIQNAELLFKDADPVD 520
           L+AC+H                SG V +  +   L+    K   R+Q+   +      VD
Sbjct: 433 LNACSH----------------SGLVKEGLLCFELMRRKHKIEPRLQHYGCM------VD 470

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
           ++S          +G+   A  L EEM ME   P+ V +   L+ACSH
Sbjct: 471 ILSR---------SGSIELAKNLIEEMPME---PNDVIWRTFLTACSH 506



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/294 (34%), Positives = 164/294 (55%), Gaps = 13/294 (4%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F QN  I    K G +  A +IF +M Q+++V+YNSMI  Y K G +  AR+LF+ M
Sbjct: 129 SDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGSARELFDLM 188

Query: 73  PQ--RNLVSWNSMIAGYLH-NDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARE 129
           P+  +NL+SWNSMI+GY   +D V  A +LF +M   DL SW  +I  Y + G +E A++
Sbjct: 189 PKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKHGRMEDAKD 248

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           LF ++P + D   W  M+ GYAK+G  ++AK L D MP +++V++NSM++GY +N     
Sbjct: 249 LFYVMP-RRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYNME 307

Query: 190 ASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV----SWVTML 240
           A + F  ME+      D  +  ++L    +L  L  A      I E+         V ++
Sbjct: 308 ALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALI 367

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
             Y++ G + +A  +F+++  +++  WNAMI      G  E A  + +E+  R+
Sbjct: 368 DMYSKCGSIQQAMLVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLEIERRS 421



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 161/305 (52%), Gaps = 17/305 (5%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQ----KNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           F+ +  +    + G V+E ++I   + +     +    N +I  Y K G +  AR++F++
Sbjct: 97  FSLSLVLKACSRLGFVQEGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDR 156

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR--PDLFSWALMITCYTRKGE-LEKAR 128
           MPQR+ VS+NSMI GY+    +  ARELFD M +   +L SW  MI+ Y +  + +  A 
Sbjct: 157 MPQRDSVSYNSMIDGYVKCGLIGSARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIAS 216

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
           +LF  +P K D   WN+++ GY K G   +AK L   MP +++V+W +M+ GY K G +H
Sbjct: 217 KLFAEMPEK-DLISWNSLIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVH 275

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGY 243
            A   F+ M  RDVV++N M+ GYV+      A + F  + +++ +S      V +LS  
Sbjct: 276 KAKTLFDQMPHRDVVAYNSMMAGYVQNKYNMEALEIFSDMEKESHLSPDETTLVIVLSAI 335

Query: 244 ARNGRMLEARRLFDQMPIRNVVAWN----AMIAAYVQRGQIEEAARLFIEMPERNPVSWT 299
           A+ GR+ +A  +   +  +          A+I  Y + G I++A  +F  +  ++   W 
Sbjct: 336 AQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQQAMLVFERIENKSIDHWN 395

Query: 300 TMIDG 304
            MI G
Sbjct: 396 AMIGG 400



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 165/338 (48%), Gaps = 56/338 (16%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQ--KNTVTYNSMISAYAKNGR-VNDARKLFEQMPQR 75
           N  I    K G +  A ++F  M +  KN +++NSMIS YA+    VN A KLF +MP++
Sbjct: 166 NSMIDGYVKCGLIGSARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEK 225

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           +L+SWNS+I GY+ + ++++A++LF  M R D+ +WA MI  Y + G + KA+ LFD +P
Sbjct: 226 DLISWNSLIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMP 285

Query: 136 NKEDTACWNAMVAGYAKIGNYN-EAKKLLDAMPSKN------------------------ 170
           ++ D   +N+M+AGY +   YN EA ++   M  ++                        
Sbjct: 286 HR-DVVAYNSMMAGYVQ-NKYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSK 343

Query: 171 -------IVSWNSMLSG---------YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE 214
                  IV     L G         Y+K G +  A   FE +E + +  WN M+ G   
Sbjct: 344 AMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQQAMLVFERIENKSIDHWNAMIGGLAI 403

Query: 215 LDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA---- 266
               +SA+    +I  +++    +++V +L+  + +G + E    F+ M  ++ +     
Sbjct: 404 HGLGESAFDMLLEIERRSIKPDDITFVGILNACSHSGLVKEGLLCFELMRRKHKIEPRLQ 463

Query: 267 -WNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMI 302
            +  M+    + G IE A  L  EMP E N V W T +
Sbjct: 464 HYGCMVDILSRSGSIELAKNLIEEMPMEPNDVIWRTFL 501



 Score = 50.4 bits (119), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/216 (23%), Positives = 92/216 (42%), Gaps = 18/216 (8%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           I    K G +++A+ +F ++  K+   +N+MI   A +G    A  +  ++ +R++   +
Sbjct: 367 IDMYSKCGSIQQAMLVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLEIERRSIKPDD 426

Query: 82  SMIAGYL----HNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARELFD 132
               G L    H+  VKE    F+ M R     P L  +  M+   +R G +E A+ L +
Sbjct: 427 ITFVGILNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIE 486

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNEAK---KLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
            +P + +   W   +   +    +   +   K L      N  S+  + + Y   G    
Sbjct: 487 EMPMEPNDVIWRTFLTACSHHKEFETGEVVAKHLILQAGYNPSSYVLLSNMYASFGMWKD 546

Query: 190 ASKFFEAMEERDV-----VSWNLMLDGYVELDDLDS 220
           A +    M+ER++      SW + LDG V    +DS
Sbjct: 547 ARRVRTMMKERELQKVPGCSW-IELDGRVHEFFVDS 581


>gi|9958072|gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
          Length = 421

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 172/411 (41%), Positives = 254/411 (61%), Gaps = 3/411 (0%)

Query: 321 MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF 380
           M  KN+   T+MI+GY+ NK +  A + FD     D+V WN MI GY + G M EA +LF
Sbjct: 1   MVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLF 60

Query: 381 RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
            QM  +D+++WNT++ GYA I  M+   ++F++M   RN  SWN LI G+ QN    + L
Sbjct: 61  DQMPCRDVMSWNTVLEGYANIGDMEACERVFDDM-PERNVFSWNGLIKGYAQNGRVSEVL 119

Query: 441 KIFVLMTQEGKKA-DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN-DLFVGNSLIT 498
             F  M  EG    + +T+   LSACA L A   G+ +H      GY   D+ V N+LI 
Sbjct: 120 GSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALID 179

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           MY KCG I+ A  +FK     D+ISWN++I G A +G+ TEA+ LF EM   G++PD VT
Sbjct: 180 MYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVT 239

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
           F+GVL AC H+GLV+ GL  F  M   ++I P +EH  C++DLLSRAG L +A E +  M
Sbjct: 240 FVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKM 299

Query: 619 KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVE 678
            +K +A IW TLLGA ++++ + +G +A+E+L +LEP+  + + +LSN++ +AGR+D+  
Sbjct: 300 PVKADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYGDAGRFDDAA 359

Query: 679 KVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAA 729
           +++V+M  +G +K+ G SWIE  + +  F S   K  RT E+   L+ L +
Sbjct: 360 RLKVAMRDTGFKKEAGVSWIETDDGLVKFYSSGEKHPRTEELQRILRELKS 410



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 126/444 (28%), Positives = 202/444 (45%), Gaps = 82/444 (18%)

Query: 197 MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF 256
           M E++VV W  M++GY+   DL SA ++F   PE+++V W TM+SGY   G MLEAR LF
Sbjct: 1   MVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLF 60

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA-- 314
           DQMP R+V++WN ++  Y   G +E   R+F +MPERN  SW  +I GY +  ++ E   
Sbjct: 61  DQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLG 120

Query: 315 --RRLLDQMP-YKNIAAQTAMISGYVQNKRMDEANQIF---DKIGTH--DVVCWNVMIKG 366
             +R++D+     N A  T ++S   +    D    +    + +G +  DV   N +I  
Sbjct: 121 SFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDM 180

Query: 367 YAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNAL 426
           Y +CG ++ A+ +F+ +  +D+++WNTMI G A      +A+ +F E             
Sbjct: 181 YGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHE------------- 227

Query: 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
                              M   G   D  T    L AC H+  ++ G           Y
Sbjct: 228 -------------------MKNSGISPDKVTFVGVLCACKHMGLVEDGL---------AY 259

Query: 487 VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEE 546
            N +F   S++     CG +            VD++S     AG+      T+A++   +
Sbjct: 260 FNSMFTDFSIMPEIEHCGCV------------VDLLSR----AGF-----LTQAVEFINK 298

Query: 547 MVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRA 605
           M    V  D V +  +L A      VD G    E   E+  +EP    ++  + ++   A
Sbjct: 299 M---PVKADAVIWATLLGASKVYKKVDIGEVALE---ELIKLEPRNPANFVMLSNIYGDA 352

Query: 606 GRLDEAFEMVKGMK---IKPNAGI 626
           GR D+A  +   M+    K  AG+
Sbjct: 353 GRFDDAARLKVAMRDTGFKKEAGV 376



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 83/263 (31%), Positives = 138/263 (52%), Gaps = 14/263 (5%)

Query: 166 MPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFF 225
           M  KN+V W SM++GY  N ++  A ++F+   ERD+V WN M+ GY+E+ ++  A   F
Sbjct: 1   MVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLF 60

Query: 226 QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAAR 285
            ++P ++V+SW T+L GYA  G M    R+FD MP RNV +WN +I  Y Q G++ E   
Sbjct: 61  DQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLG 120

Query: 286 LFIEMPER-----NPVSWTTMIDGYVRIAKLDEAR---RLLDQMPYK--NIAAQTAMISG 335
            F  M +      N  + T ++    ++   D  +   +  + + Y   ++  + A+I  
Sbjct: 121 SFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDM 180

Query: 336 YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVTW 391
           Y +   ++ A ++F  I   D++ WN MI G A  G   EA+NLF +M N     D VT+
Sbjct: 181 YGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTF 240

Query: 392 NTMIAGYAQIRQMDDAVKIFEEM 414
             ++     +  ++D +  F  M
Sbjct: 241 VGVLCACKHMGLVEDGLAYFNSM 263



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 110/405 (27%), Positives = 186/405 (45%), Gaps = 32/405 (7%)

Query: 41  MSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF 100
           M +KN V + SMI+ Y  N  +  AR+ F+  P+R++V WN+MI+GY+    + EAR LF
Sbjct: 1   MVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLF 60

Query: 101 DKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA- 159
           D+M   D+ SW  ++  Y   G++E    +FD +P + +   WN ++ GYA+ G  +E  
Sbjct: 61  DQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPER-NVFSWNGLIKGYAQNGRVSEVL 119

Query: 160 ---KKLLD-AMPSKNIVSWNSMLSGYTKNGEMHLAS---KFFEAM--EERDVVSWNLMLD 210
              K+++D      N  +   +LS   K G         K+ E +   + DV   N ++D
Sbjct: 120 GSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALID 179

Query: 211 GYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VA 266
            Y +   ++ A + F+ I  ++++SW TM++G A +G   EA  LF +M    +    V 
Sbjct: 180 MYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVT 239

Query: 267 WNAMIAAYVQRGQIEEAARLFIE-------MPERNPVSWTTMIDGYVRIAKLDEARRLLD 319
           +  ++ A    G +E+    F         MPE        ++D   R   L +A   ++
Sbjct: 240 FVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCG--CVVDLLSRAGFLTQAVEFIN 297

Query: 320 QMPYKNIAAQTAMISGYVQ-NKRMDEANQIFD---KIGTHDVVCWNVMIKGYAQCGRMDE 375
           +MP K  A   A + G  +  K++D      +   K+   +   + ++   Y   GR D+
Sbjct: 298 KMPVKADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYGDAGRFDD 357

Query: 376 AINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
           A  L   M +    T     AG + I   D  VK +    K   T
Sbjct: 358 AARLKVAMRD----TGFKKEAGVSWIETDDGLVKFYSSGEKHPRT 398



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 168/374 (44%), Gaps = 23/374 (6%)

Query: 103 MFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKL 162
           M   ++  W  MI  Y    +L  AR  FDL P + D   WN M++GY ++GN  EA+ L
Sbjct: 1   MVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPER-DIVLWNTMISGYIEMGNMLEARSL 59

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAW 222
            D MP ++++SWN++L GY   G+M    + F+ M ER+V SWN ++ GY +   +    
Sbjct: 60  FDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVL 119

Query: 223 KFFQKIPEQ-----NVVSWVTMLSGYARNGRMLEARRLFDQMPIR-----NVVAWNAMIA 272
             F+++ ++     N  +   +LS  A+ G     + +            +V   NA+I 
Sbjct: 120 GSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALID 179

Query: 273 AYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAM 332
            Y + G IE A  +F  +  R+ +SW TMI+G        EA  L  +M    I+     
Sbjct: 180 MYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVT 239

Query: 333 ISGYV----QNKRMDEANQIFDKIGTH-----DVVCWNVMIKGYAQCGRMDEAINLFRQM 383
             G +        +++    F+ + T      ++     ++   ++ G + +A+    +M
Sbjct: 240 FVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKM 299

Query: 384 -VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK--RRNTVSWNALISGFLQNEFHLDAL 440
            V  D V W T++      +++D      EE+ K   RN  ++  L + +       DA 
Sbjct: 300 PVKADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYGDAGRFDDAA 359

Query: 441 KIFVLMTQEGKKAD 454
           ++ V M   G K +
Sbjct: 360 RLKVAMRDTGFKKE 373



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 152/323 (47%), Gaps = 26/323 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I+   + G + EA  +F QM  ++ +++N+++  YA  G +    ++F+ MP+RN+ 
Sbjct: 41  NTMISGYIEMGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVF 100

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARELFD- 132
           SWN +I GY  N +V E    F +M       P+  +  L+++   + G  +  + +   
Sbjct: 101 SWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKY 160

Query: 133 ---LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
              L  NK D    NA++  Y K G    A ++   +  ++++SWN+M++G   +G    
Sbjct: 161 GETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTE 220

Query: 190 ASKFFEAMEER----DVVSWNLMLD-----GYVE--LDDLDSAWKFFQKIPEQNVVSWVT 238
           A   F  M+      D V++  +L      G VE  L   +S +  F  +PE      V 
Sbjct: 221 ALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVV 280

Query: 239 MLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAA---YVQRGQIEEAARLFIEMPERN 294
            L   +R G + +A    ++MP++ + V W  ++ A   Y +    E A    I++  RN
Sbjct: 281 DL--LSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRN 338

Query: 295 PVSWTTMIDGYVRIAKLDEARRL 317
           P ++  + + Y    + D+A RL
Sbjct: 339 PANFVMLSNIYGDAGRFDDAARL 361


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  338 bits (866), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 170/488 (34%), Positives = 284/488 (58%), Gaps = 9/488 (1%)

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM---PERNPVSWTTMIDGYVRI 308
           A ++F  +P  NV  WN +I   ++  ++ +A   +  M      N  ++ T+       
Sbjct: 86  ALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDARPNKFTYPTLFKACSVA 145

Query: 309 AKLDEARRLLDQMPYKNIAA----QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMI 364
             + E R++   +    I +    ++A I  Y    R+++A ++F   G  DVVCWN MI
Sbjct: 146 QAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYS-GESDVVCWNTMI 204

Query: 365 KGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
            GY +CG ++ A  LF QM  K+I +WN MI G A+   + DA K+F+EM +R + +SW+
Sbjct: 205 DGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSER-DEISWS 263

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
           +++ G++    + +AL+IF  M +E  +     L+  L+AC+++ A+  GR +H    ++
Sbjct: 264 SMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRN 323

Query: 485 GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLF 544
               D  +G +L+ MYAKCGR+     +F++    ++ +WN++I G AI+G A +A++LF
Sbjct: 324 SIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELF 383

Query: 545 EEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSR 604
            ++    + P+ +T +GVL+AC+H G VD GL++F+ M E Y ++P +EHY CM+DLL R
Sbjct: 384 SKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGR 443

Query: 605 AGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALL 664
           +G   EA +++  M +KPNA +WG LLGACR+H N  L     + L ELEPQ +  Y LL
Sbjct: 444 SGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLL 503

Query: 665 SNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTL 724
           SN++A+ GR+D+V K+R  M+  G +  PG S +++   +H F  GD    +  EI   L
Sbjct: 504 SNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKL 563

Query: 725 KTLAAQIR 732
           K +  +++
Sbjct: 564 KIIKERLQ 571



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 113/447 (25%), Positives = 176/447 (39%), Gaps = 123/447 (27%)

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF---RPDLFSWALM------- 114
           A K+F  +P  N+  WN +I G L N+K+ +A   + +M    RP+ F++  +       
Sbjct: 86  ALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDARPNKFTYPTLFKACSVA 145

Query: 115 ----------------------------ITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
                                       I  Y   G LE AR++F     + D  CWN M
Sbjct: 146 QAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMF--YSGESDVVCWNTM 203

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN 206
           + GY K G    AK L   MP KNI SWN M++G  K G +  A K F+ M ERD +SW+
Sbjct: 204 IDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWS 263

Query: 207 LMLDGYVELDDLDSAWKFFQKI------PEQNVVS----------------WV------- 237
            M+DGY+       A + FQ++      P + ++S                WV       
Sbjct: 264 SMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRN 323

Query: 238 ----------TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF 287
                      +L  YA+ GR+     +F++M  R +  WNAMI      G+ E+A  LF
Sbjct: 324 SIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELF 383

Query: 288 IEMPE----RNPVS------------------------------------WTTMIDGYVR 307
            ++ E     N ++                                    +  M+D   R
Sbjct: 384 SKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGR 443

Query: 308 IAKLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMDEA---NQIFDKIGTHDVVCWNVM 363
                EA  L++ MP K N A   A++     +   D A    +I  ++   +   + ++
Sbjct: 444 SGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLL 503

Query: 364 IKGYAQCGRMDEAINLFRQMVNKDIVT 390
              YA+ GR D+   + + M N+ I T
Sbjct: 504 SNIYAKVGRFDDVSKIRKLMKNRGIKT 530



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 168/353 (47%), Gaps = 24/353 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I    K G +E A  +F+QM  KN  ++N MI+  AK G + DARKLF++M +R+ +
Sbjct: 201 NTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEI 260

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLL 134
           SW+SM+ GY+   + KEA E+F +M     RP  F  + ++   +  G +++ R +   L
Sbjct: 261 SWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYL 320

Query: 135 PN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
                K D     A++  YAK G  +   ++ + M  + I +WN+M+ G   +G    A 
Sbjct: 321 KRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDAL 380

Query: 192 KFFEAMEERDVVSWNLMLDGYV----ELDDLDSAWKFFQKIPE-----QNVVSWVTMLSG 242
           + F  ++E  +    + L G +        +D   + FQ + E       +  +  M+  
Sbjct: 381 ELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDL 440

Query: 243 YARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAAR---LFIEMPERNPVSW 298
             R+G   EA  L + MP++ N   W A++ A    G  + A R   + +E+  +N   +
Sbjct: 441 LGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRY 500

Query: 299 TTMIDGYVRIAKLDEA---RRLLDQMPYKNIAAQTAM-ISGYVQNKRMDEANQ 347
             + + Y ++ + D+    R+L+     K +   + + ++G V   +M + + 
Sbjct: 501 VLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSH 553



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 105/258 (40%), Gaps = 38/258 (14%)

Query: 468 LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYA--KCGRIQNAELLFKDADPVDVISWN 525
           + +LQ   Q+H L ++SG+  D +V  +L+  YA         A  +F      +V  WN
Sbjct: 43  ITSLQYLTQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWN 102

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS-----------HVGLVDG 574
            +I G   N    +AI  +  MV++   P+  T+  +  ACS           H  +V  
Sbjct: 103 IVIKGCLENNKLFKAIYFYGRMVIDA-RPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKH 161

Query: 575 GL------------------KLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVK 616
           G+                  +L +     Y+ E  V  +  MID   + G L+ A  +  
Sbjct: 162 GIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFA 221

Query: 617 GMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDE 676
            M +K N G W  ++       N+   R   +++SE   +    ++ + + +  AGR+ E
Sbjct: 222 QMPVK-NIGSWNVMINGLAKGGNLGDARKLFDEMSE---RDEISWSSMVDGYISAGRYKE 277

Query: 677 VEKVRVSMEGSGAQKQPG 694
             ++   M+    + +PG
Sbjct: 278 ALEIFQQMQRE--ETRPG 293


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  338 bits (866), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 198/632 (31%), Positives = 317/632 (50%), Gaps = 59/632 (9%)

Query: 159 AKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDL 218
           A+ + D +P  ++V WN M+  Y  +G    +   +  M +  V   N      ++    
Sbjct: 60  ARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSS 119

Query: 219 DSAWKFFQKIPEQNVVSWVTM--------LSGYARNGRMLEARRLFDQMPI--RNVVAWN 268
             A +  + I     +  ++M        L  YA+ G + +A+ LF+ +    R++VAWN
Sbjct: 120 LQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWN 179

Query: 269 AMIAAY----VQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL----LDQ 320
           AMIAA+    +    I   A++       N  +  +++    +   L + + +    +  
Sbjct: 180 AMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRN 239

Query: 321 MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF 380
             + N+  QTA++  Y +   +  A +IF+ +   + VCW+ MI GY     + +A+ L+
Sbjct: 240 FFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALY 299

Query: 381 RQMV----------------------------------------NKDIVTWNTMIAGYAQ 400
             M+                                        + D    N++I+ YA+
Sbjct: 300 DDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAK 359

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
              MD+AV   +EM   ++TVS++A+ISG +QN +   AL IF  M   G      T+  
Sbjct: 360 CGIMDNAVGFLDEM-IAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIA 418

Query: 461 ALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVD 520
            L AC+HLAALQ G   H   +  G+ ND  + N++I MY+KCG+I  +  +F      D
Sbjct: 419 LLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRD 478

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE 580
           +ISWN++I GY I+G   EA+ LF+E+   G+ PD VT I VLSACSH GLV  G   F 
Sbjct: 479 IISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFS 538

Query: 581 CMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNI 640
            M++ + I+P + HY CM+DLL+RAG LDEA+  ++ M   PN  IWG LL ACR H+NI
Sbjct: 539 SMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNI 598

Query: 641 KLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEV 700
           ++G    +K+  L P+ T  + L+SN+++  GRWD+   +R      G +K PGCSW+E+
Sbjct: 599 EMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEI 658

Query: 701 KNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
              IH F+ G     ++A I   L+ L  Q++
Sbjct: 659 SGVIHVFIGGHQSHPQSASINKKLQELLVQMK 690



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 120/532 (22%), Positives = 212/532 (39%), Gaps = 105/532 (19%)

Query: 15  VFNQNKKITQLGK----SGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFE 70
           V + +   TQL +       ++ A  +F Q+ + + V +N MI  YA +G    +  L+ 
Sbjct: 37  VSDSDAAATQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYL 96

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM--------FRPDLFSWALMITCYTRKG 122
            M Q  +   N      L      +A +L   +           DL+    ++  Y + G
Sbjct: 97  HMLQLGVTPTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCG 156

Query: 123 ELEKARELFDLLPNKE-DTACWNAMVAGYA----KIGNYNEAKKLLDAMPSKNIVSWNSM 177
            L +A+ LF+ + +++ D   WNAM+A ++         +   ++  A  + N  +  S+
Sbjct: 157 HLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSI 216

Query: 178 LSGYTKNGEMH----LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV 233
           L    +   +H    + + +       +VV    +LD Y +   L  A K F  + ++N 
Sbjct: 217 LPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKND 276

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQM-------PIRNVVAWNAMIAAYVQRGQIEEAARL 286
           V W  M+ GY  +  + +A  L+D M       P    +A   M+ A  Q   ++   +L
Sbjct: 277 VCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLA--TMLRACAQLTDLKRGKKL 334

Query: 287 FIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRM 342
              M +     +     ++I  Y +   +D A   LD+M  K+  + +A+ISG VQN   
Sbjct: 335 HCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYA 394

Query: 343 DEANQIFDKIG---------------------------------------THDVVCWNVM 363
           ++A  IF ++                                        T+D    N +
Sbjct: 395 EKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAI 454

Query: 364 IKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
           I  Y++CG++  +  +F +M N+DI++WNTMI GY       +A+ +F+E          
Sbjct: 455 IDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQE---------- 504

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
                        L AL         G K D  TL   LSAC+H   +  G+
Sbjct: 505 -------------LQAL---------GLKPDDVTLIAVLSACSHSGLVTEGK 534



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 109/243 (44%), Gaps = 21/243 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I+   K G ++ A+    +M  K+TV+Y+++IS   +NG    A  +F QM    + 
Sbjct: 351 NSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIA 410

Query: 79  SW-NSMIA--------GYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARE 129
            +  +MIA          L +        +  + F  D      +I  Y++ G++  +RE
Sbjct: 411 PYLETMIALLPACSHLAALQHGTCCHGYTVV-RGFTNDTSICNAIIDMYSKCGKITISRE 469

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNG 185
           +FD + N+ D   WN M+ GY   G   EA  L   + +  +    V+  ++LS  + +G
Sbjct: 470 IFDRMQNR-DIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSG 528

Query: 186 EMHLASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSWVTM 239
            +     +F +M +       +  +  M+D      +LD A+ F Q++P   NV  W  +
Sbjct: 529 LVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGAL 588

Query: 240 LSG 242
           L+ 
Sbjct: 589 LAA 591



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 79/154 (51%), Gaps = 11/154 (7%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           +T   N++I  Y+K G++  +R++F++M  R+++SWN+MI GY  +    EA  LF ++ 
Sbjct: 447 DTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQ 506

Query: 104 ---FRPDLFSWALMITCYTRKGELEKARELFDLLPN----KEDTACWNAMVAGYAKIGNY 156
               +PD  +   +++  +  G + + +  F  +      K   A +  MV   A+ GN 
Sbjct: 507 ALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNL 566

Query: 157 NEAKKLLDAMP-SKNIVSWNSMLSG--YTKNGEM 187
           +EA   +  MP   N+  W ++L+     KN EM
Sbjct: 567 DEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEM 600


>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 833

 Score =  338 bits (866), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 230/760 (30%), Positives = 380/760 (50%), Gaps = 78/760 (10%)

Query: 20  KKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ--RNL 77
            K+  L ++ +V  A+ I +    ++     S+I  YAK         LF Q  Q  R  
Sbjct: 65  SKVQSLLQTKQVH-ALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSLFNQTFQNCRTA 123

Query: 78  VSWNSMIAGY-LHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKARELFD 132
             WN++I  + +  +   +  E +++M R     D  ++  ++   +   ++ K  E+  
Sbjct: 124 FLWNTLIRAHSIAWNGTFDGFETYNRMVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHG 183

Query: 133 L---LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           +   L    D    N ++  Y   G  N+A++L D MP +++VSWN+++   + NG+   
Sbjct: 184 VVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTE 243

Query: 190 ASKFFEAMEERDVVSWNL----------------------------------------ML 209
           A  ++  M  R V+  NL                                        ++
Sbjct: 244 ARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALV 303

Query: 210 DGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA----RRLFDQMPIRNVV 265
           D Y +   + + W+ F +  E+N VSW ++++G A  GR  +A    R + D     N V
Sbjct: 304 DAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSV 363

Query: 266 AWNAMIAAYVQRGQIEEAARLF---IEM-PERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
             ++++   V+    +    +    + M  E +     ++ID Y +     EA  +   +
Sbjct: 364 TISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNL 423

Query: 322 PYKNIAAQTAMISGYVQNK----------RMDEANQIFDKIGTHDVV--CWNVMIKGYAQ 369
             +NI +  AMI+ Y  N+          +M E  +  + +   +V+  C  +   G+  
Sbjct: 424 DRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARL---GFLG 480

Query: 370 CGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
            G+   A+ + R  +  D+   N++I  YA+   +  A  +F     R++ VS+N LI G
Sbjct: 481 PGKEIHAMGV-RIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNT--SRKDEVSYNILIIG 537

Query: 430 FLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND 489
           + + +  L +L +F  M   GKK D  +    +SACA+LAAL+ G+++H +A+++   + 
Sbjct: 538 YSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRNHLYSH 597

Query: 490 LFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549
           LFV NSL+  Y KCGRI  A  LF      DV SWN++I GY + G    AI +FE M  
Sbjct: 598 LFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRD 657

Query: 550 EGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLD 609
           + V  D V++I VLSACSH GLV+ G + F  M     +EP   HY CM+DLL RAG ++
Sbjct: 658 DTVQYDLVSYIAVLSACSHGGLVERGWQYFSEML-AQRLEPTEMHYTCMVDLLGRAGFVE 716

Query: 610 EAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHA 669
           EA ++++ + I P+A IWG LLGACR++ N++LGR A E L EL+PQ    Y LLSN++A
Sbjct: 717 EAAKLIQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHCGYYILLSNIYA 776

Query: 670 EAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLS 709
           E GRWDE  K+R  M+  GA+K PGCSW+++ +Q+H F++
Sbjct: 777 ETGRWDEANKIRELMKSRGAKKNPGCSWVQIYDQVHAFVA 816



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 103/450 (22%), Positives = 195/450 (43%), Gaps = 68/450 (15%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V   N  +   GK G V+   ++F++  +KN V++NS+I+  A  GR  DA   F  M
Sbjct: 294 SQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMM 353

Query: 73  ----PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGEL 124
                Q N V+ +S++   +  +  K  +E+     R     D+F    +I  Y + G  
Sbjct: 354 IDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHS 413

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYA----------------KIGNYNEAKKLLDAMP- 167
            +A  +F  L ++ +   WNAM+A YA                + G    A    + +P 
Sbjct: 414 TEASTIFHNL-DRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPA 472

Query: 168 ----------------------SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW 205
                                 + ++   NS++  Y K G +H A   F     +D VS+
Sbjct: 473 CARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNT-SRKDEVSY 531

Query: 206 NLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
           N+++ GY E DD   +   F ++     + +VVS+V ++S  A    + + + +   + +
Sbjct: 532 NILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEV-HGVAL 590

Query: 262 RN-----VVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
           RN     +   N+++  Y + G+I+ A RLF ++  ++  SW TMI GY  I +L+ A  
Sbjct: 591 RNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAIS 650

Query: 317 LLDQM----PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV----VCWNVMIKGYA 368
           + + M       ++ +  A++S       ++   Q F ++    +    + +  M+    
Sbjct: 651 MFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQRLEPTEMHYTCMVDLLG 710

Query: 369 QCGRMDEAINLFRQM-VNKDIVTWNTMIAG 397
           + G ++EA  L +Q+ +  D   W  ++  
Sbjct: 711 RAGFVEEAAKLIQQLPIAPDANIWGALLGA 740



 Score = 68.9 bits (167), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 15/201 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S++F  N  +    K GR++ A ++F+Q+  K+  ++N+MI  Y   G +  A  +FE M
Sbjct: 596 SHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAM 655

Query: 73  ----PQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGEL 124
                Q +LVS+ ++++   H   V+   + F +M      P    +  M+    R G +
Sbjct: 656 RDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQRLEPTEMHYTCMVDLLGRAGFV 715

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYN----EAKKLLDAMPSKNIVSWNSMLSG 180
           E+A +L   LP   D   W A++      GN       A+ L +  P      +  +LS 
Sbjct: 716 EEAAKLIQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQH--CGYYILLSN 773

Query: 181 -YTKNGEMHLASKFFEAMEER 200
            Y + G    A+K  E M+ R
Sbjct: 774 IYAETGRWDEANKIRELMKSR 794


>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
 gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
          Length = 690

 Score =  338 bits (866), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 174/502 (34%), Positives = 286/502 (56%), Gaps = 9/502 (1%)

Query: 238 TMLSGYARNGRMLEARRLFDQMPIR--NVVAWNAMIAAYVQRGQIEEAA---RLFIEMPE 292
           T+L  YA N     A  +F  MP+R  +   ++ +I A    G     A    +F     
Sbjct: 177 TLLRAYALNSLPHAALAVFVDMPLRQRDTFTYSFLIKALATAGVTPVRAAHTHVFKLGSV 236

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
            +      +ID Y +   L +A+++ D+M  +++ +    ++  V+   +D A  +FD++
Sbjct: 237 EDTFVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEVDAARSMFDEM 296

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFE 412
              D V WN M+ GYA+ G  +EA  LF++M  +++V+W+T+++ Y +   M+ A  IF+
Sbjct: 297 PEKDTVSWNTMLDGYAKAGEAEEAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFD 356

Query: 413 EMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQ 472
           +M   +N V+W  ++S   Q     +A ++F  M +   + D   +   L+ACA    L 
Sbjct: 357 KM-PAKNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVVAVVSILAACAESGCLA 415

Query: 473 LGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAG 530
           LG++IH    +        V N+L+ M+ KCG +  A+ +F D + V  D +SWN +I G
Sbjct: 416 LGKRIHRHVRQRKLGRSTLVCNALMDMFCKCGCVNRADYIF-DTEIVEKDSVSWNIIIGG 474

Query: 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP 590
           +A++G+  +A+ LF +M  +G  PD VT I VLSAC+H+GLV+ G + F  M   Y I+P
Sbjct: 475 FAMHGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKP 534

Query: 591 LVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL 650
            +EHY CM+DLL R G + EA +M+K M  +PN  IWG+LL ACR+H+N++   +A  +L
Sbjct: 535 EIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEVIWGSLLSACRLHKNVEYAELAANEL 594

Query: 651 SELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSG 710
           S L+P     YA+LSN++AEAG+W ++ K RV M+G+G+QK  G SWIE+    H F  G
Sbjct: 595 SNLQPSNAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWIELDEAFHEFTVG 654

Query: 711 DPKQCRTAEICNTLKTLAAQIR 732
           D K   + +I + +  L++ ++
Sbjct: 655 DRKHPESDQISDMIDRLSSHVK 676



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/380 (29%), Positives = 192/380 (50%), Gaps = 44/380 (11%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF 109
           N+++ AYA N   + A  +F  MP R                               D F
Sbjct: 176 NTLLRAYALNSLPHAALAVFVDMPLRQR-----------------------------DTF 206

Query: 110 SWALMITCYTRKG--ELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP 167
           +++ +I      G   +  A      L + EDT   NA++  Y+K    ++AKK+ D M 
Sbjct: 207 TYSFLIKALATAGVTPVRAAHTHVFKLGSVEDTFVGNALIDAYSKNDGLSDAKKVFDEMT 266

Query: 168 SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK 227
           ++++VSWN+ ++   + GE+  A   F+ M E+D VSWN MLDGY +  + + A++ FQ+
Sbjct: 267 TRDVVSWNTAMAAMVRKGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEEAFELFQR 326

Query: 228 IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF 287
           +P +NVVSW T++S Y + G M  AR +FD+MP +N+V W  M++A  Q+G + EA RLF
Sbjct: 327 MPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLF 386

Query: 288 IEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT----AMISGYVQN 339
            EM E     + V+  +++        L   +R+   +  + +   T    A++  + + 
Sbjct: 387 TEMKEAAIELDVVAVVSILAACAESGCLALGKRIHRHVRQRKLGRSTLVCNALMDMFCKC 446

Query: 340 KRMDEANQIFD-KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTM 394
             ++ A+ IFD +I   D V WN++I G+A  G  ++A+NLF QM     + D VT   +
Sbjct: 447 GCVNRADYIFDTEIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINV 506

Query: 395 IAGYAQIRQMDDAVKIFEEM 414
           ++    +  +++  + F  M
Sbjct: 507 LSACTHMGLVEEGRRFFANM 526



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 186/378 (49%), Gaps = 47/378 (12%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           +F   S ++T   N++I AY+KN  ++DA+K+F++M  R++VSWN+ +A  +   +V  A
Sbjct: 230 VFKLGSVEDTFVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEVDAA 289

Query: 97  RELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNY 156
           R +FD+M   D  SW  M+  Y + GE E+A ELF  +P + +   W+ +V+ Y K G+ 
Sbjct: 290 RSMFDEMPEKDTVSWNTMLDGYAKAGEAEEAFELFQRMPGR-NVVSWSTVVSAYCKKGDM 348

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELD 216
             A+ + D MP+KN+V+W  M+S   + G +  A + F  M+E             +ELD
Sbjct: 349 EMARVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEMKE-----------AAIELD 397

Query: 217 DLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI----RNVVAWNAMIA 272
                           VV+ V++L+  A +G +   +R+   +      R+ +  NA++ 
Sbjct: 398 ----------------VVAVVSILAACAESGCLALGKRIHRHVRQRKLGRSTLVCNALMD 441

Query: 273 AYVQRGQIEEAARLF-IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN------ 325
            + + G +  A  +F  E+ E++ VSW  +I G+      ++A  L  QM  +       
Sbjct: 442 MFCKCGCVNRADYIFDTEIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPDAV 501

Query: 326 -----IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF 380
                ++A T M  G V+  R   AN   D     ++  +  M+    + G + EA+++ 
Sbjct: 502 TLINVLSACTHM--GLVEEGRRFFANMETDYGIKPEIEHYGCMVDLLGRGGLIKEAVDMI 559

Query: 381 RQMV-NKDIVTWNTMIAG 397
           + M    + V W ++++ 
Sbjct: 560 KSMPWEPNEVIWGSLLSA 577



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 174/330 (52%), Gaps = 23/330 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            F  N  I    K+  + +A K+F +M+ ++ V++N+ ++A  + G V+ AR +F++MP+
Sbjct: 239 TFVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEVDAARSMFDEMPE 298

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           ++ VSWN+M+ GY    + +EA ELF +M   ++ SW+ +++ Y +KG++E AR +FD +
Sbjct: 299 KDTVSWNTMLDGYAKAGEAEEAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKM 358

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSMLSGYTKNGEMHLA 190
           P K +   W  MV+  A+ G   EA +L   M       ++V+  S+L+   ++G + L 
Sbjct: 359 PAK-NLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVVAVVSILAACAESGCLALG 417

Query: 191 SKFFEAMEERDV----VSWNLMLDGYVELDDLDSA-WKFFQKIPEQNVVSWVTMLSGYAR 245
            +    + +R +    +  N ++D + +   ++ A + F  +I E++ VSW  ++ G+A 
Sbjct: 418 KRIHRHVRQRKLGRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDSVSWNIIIGGFAM 477

Query: 246 NGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEM-------PERN 294
           +G   +A  LF QM  +    + V    +++A    G +EE  R F  M       PE  
Sbjct: 478 HGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPEIE 537

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
              +  M+D   R   + EA  ++  MP++
Sbjct: 538 --HYGCMVDLLGRGGLIKEAVDMIKSMPWE 565



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 157/306 (51%), Gaps = 18/306 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  +  + + G V+ A  +F +M +K+TV++N+M+  YAK G   +A +LF++MP 
Sbjct: 270 VVSWNTAMAAMVRKGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEEAFELFQRMPG 329

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN+VSW+++++ Y     ++ AR +FDKM   +L +W +M++   +KG + +A  LF  +
Sbjct: 330 RNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEM 389

Query: 135 PNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEM 187
                  D     +++A  A+ G     K++   +  + +    +  N+++  + K G +
Sbjct: 390 KEAAIELDVVAVVSILAACAESGCLALGKRIHRHVRQRKLGRSTLVCNALMDMFCKCGCV 449

Query: 188 HLASKFFEA-MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSG 242
           + A   F+  + E+D VSWN+++ G+      + A   F ++ +Q    + V+ + +LS 
Sbjct: 450 NRADYIFDTEIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINVLSA 509

Query: 243 YARNGRMLEARRLFDQMPI-----RNVVAWNAMIAAYVQRGQIEEAARLFIEMP-ERNPV 296
               G + E RR F  M         +  +  M+    + G I+EA  +   MP E N V
Sbjct: 510 CTHMGLVEEGRRFFANMETDYGIKPEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEV 569

Query: 297 SWTTMI 302
            W +++
Sbjct: 570 IWGSLL 575



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 117/250 (46%), Gaps = 20/250 (8%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G  V + +  ++   K G +E A  IF +M  KN VT+  M+SA A+ G V +A +LF +
Sbjct: 329 GRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFTE 388

Query: 72  MPQR----NLVSWNSMIAGYLHNDKVKEARELF-----DKMFRPDLFSWALMITCYTRKG 122
           M +     ++V+  S++A    +  +   + +       K+ R  L   ALM   + + G
Sbjct: 389 MKEAAIELDVVAVVSILAACAESGCLALGKRIHRHVRQRKLGRSTLVCNALM-DMFCKCG 447

Query: 123 ELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSML 178
            + +A  +FD    ++D+  WN ++ G+A  G+  +A  L   M  +    + V+  ++L
Sbjct: 448 CVNRADYIFDTEIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINVL 507

Query: 179 SGYTKNGEMHLASKFFEAME-----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-EQN 232
           S  T  G +    +FF  ME     + ++  +  M+D       +  A    + +P E N
Sbjct: 508 SACTHMGLVEEGRRFFANMETDYGIKPEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPN 567

Query: 233 VVSWVTMLSG 242
            V W ++LS 
Sbjct: 568 EVIWGSLLSA 577


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 170/488 (34%), Positives = 284/488 (58%), Gaps = 9/488 (1%)

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM---PERNPVSWTTMIDGYVRI 308
           A ++F  +P  NV  WN +I   ++  ++ +A   +  M      N  ++ T+       
Sbjct: 86  ALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDARPNKFTYPTLFKACSVA 145

Query: 309 AKLDEARRLLDQMPYKNIAA----QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMI 364
             + E R++   +    I +    ++A I  Y    R+++A ++F   G  DVVCWN MI
Sbjct: 146 QAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYS-GESDVVCWNTMI 204

Query: 365 KGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
            GY +CG ++ A  LF QM  K+I +WN MI G A+   + DA K+F+EM +R + +SW+
Sbjct: 205 DGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSER-DEISWS 263

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
           +++ G++    + +AL+IF  M +E  +     L+  L+AC+++ A+  GR +H    ++
Sbjct: 264 SMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRN 323

Query: 485 GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLF 544
               D  +G +L+ MYAKCGR+     +F++    ++ +WN++I G AI+G A +A++LF
Sbjct: 324 SIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELF 383

Query: 545 EEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSR 604
            ++    + P+ +T +GVL+AC+H G VD GL++F+ M E Y ++P +EHY CM+DLL R
Sbjct: 384 SKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGR 443

Query: 605 AGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALL 664
           +G   EA +++  M +KPNA +WG LLGACR+H N  L     + L ELEPQ +  Y LL
Sbjct: 444 SGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLL 503

Query: 665 SNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTL 724
           SN++A+ GR+D+V K+R  M+  G +  PG S +++   +H F  GD    +  EI   L
Sbjct: 504 SNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKL 563

Query: 725 KTLAAQIR 732
           K +  +++
Sbjct: 564 KIIKERLQ 571



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 141/338 (41%), Gaps = 83/338 (24%)

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF---RPDLFSWALM------- 114
           A K+F  +P  N+  WN +I G L N+K+ +A   + +M    RP+ F++  +       
Sbjct: 86  ALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDARPNKFTYPTLFKACSVA 145

Query: 115 ----------------------------ITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
                                       I  Y   G LE AR++F     + D  CWN M
Sbjct: 146 QAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMF--YSGESDVVCWNTM 203

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN 206
           + GY K G    AK L   MP KNI SWN M++G  K G +  A K F+ M ERD +SW+
Sbjct: 204 IDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWS 263

Query: 207 LMLDGYVELDDLDSAWKFFQKI------PEQNVVS----------------WV------- 237
            M+DGY+       A + FQ++      P + ++S                WV       
Sbjct: 264 SMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRN 323

Query: 238 ----------TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF 287
                      +L  YA+ GR+     +F++M  R +  WNAMI      G+ E+A  LF
Sbjct: 324 SIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELF 383

Query: 288 IEMPE----RNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
            ++ E     N ++   ++        +D+  R+   M
Sbjct: 384 SKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTM 421



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 168/353 (47%), Gaps = 24/353 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I    K G +E A  +F+QM  KN  ++N MI+  AK G + DARKLF++M +R+ +
Sbjct: 201 NTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEI 260

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLL 134
           SW+SM+ GY+   + KEA E+F +M     RP  F  + ++   +  G +++ R +   L
Sbjct: 261 SWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYL 320

Query: 135 PN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
                K D     A++  YAK G  +   ++ + M  + I +WN+M+ G   +G    A 
Sbjct: 321 KRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDAL 380

Query: 192 KFFEAMEERDVVSWNLMLDGYV----ELDDLDSAWKFFQKIPE-----QNVVSWVTMLSG 242
           + F  ++E  +    + L G +        +D   + FQ + E       +  +  M+  
Sbjct: 381 ELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDL 440

Query: 243 YARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAAR---LFIEMPERNPVSW 298
             R+G   EA  L + MP++ N   W A++ A    G  + A R   + +E+  +N   +
Sbjct: 441 LGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRY 500

Query: 299 TTMIDGYVRIAKLDEA---RRLLDQMPYKNIAAQTAM-ISGYVQNKRMDEANQ 347
             + + Y ++ + D+    R+L+     K +   + + ++G V   +M + + 
Sbjct: 501 VLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSH 553



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 105/258 (40%), Gaps = 38/258 (14%)

Query: 468 LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYA--KCGRIQNAELLFKDADPVDVISWN 525
           + +LQ   Q+H L ++SG+  D +V  +L+  YA         A  +F      +V  WN
Sbjct: 43  ITSLQYLTQLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWN 102

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS-----------HVGLVDG 574
            +I G   N    +AI  +  MV++   P+  T+  +  ACS           H  +V  
Sbjct: 103 IVIKGCLENNKLFKAIYFYGRMVID-ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKH 161

Query: 575 GL------------------KLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVK 616
           G+                  +L +     Y+ E  V  +  MID   + G L+ A  +  
Sbjct: 162 GIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFA 221

Query: 617 GMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDE 676
            M +K N G W  ++       N+   R   +++SE   +    ++ + + +  AGR+ E
Sbjct: 222 QMPVK-NIGSWNVMINGLAKGGNLGDARKLFDEMSE---RDEISWSSMVDGYISAGRYKE 277

Query: 677 VEKVRVSMEGSGAQKQPG 694
             ++   M+    + +PG
Sbjct: 278 ALEIFQQMQRE--ETRPG 293


>gi|357443809|ref|XP_003592182.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481230|gb|AES62433.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 912

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 222/782 (28%), Positives = 390/782 (49%), Gaps = 73/782 (9%)

Query: 21  KITQLGKSGRVEEAIKIFSQMS----QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRN 76
           ++     S  ++E I I S +     Q +    N+++S YAK   V+ AR LF++MP R+
Sbjct: 20  RVLSFCNSNSLKEGICIHSPIIKLGLQHDLYLTNNLLSLYAKTFGVHRARHLFDEMPNRD 79

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFD 132
           +VSW ++++ +       +A +LFD M      P+ F+ +  +      GE E+  ++  
Sbjct: 80  VVSWTTILSSHTKTKHHSDALQLFDMMIGSGEYPNEFTLSSALRSCFALGEFERGMQIHC 139

Query: 133 L---LPNKEDTACWNAMVAGYAKIGNYN-EAKKLLDAMP-SKNIVSWNSMLSGYTKNGEM 187
               L  + +     ++V  Y K G  + EA KLL  +    ++VSW +MLS   +NG+ 
Sbjct: 140 SAVKLGLEMNRFVGTSLVEFYTKCGCCSVEAWKLLSLVKDGGDVVSWTTMLSSLVENGKW 199

Query: 188 HLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTM 239
             A + +  M E  V     ++  +L        L         +     E N+V    +
Sbjct: 200 GEAFEIYVKMIESGVYPNEFTFVKLLGAVSSFLGLSYGKLLHAHLIMFGAELNLVLKTAV 259

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NP 295
           +  Y++  RM++A ++ +  P  +V  W  +I+ + Q  Q+ EA  +F +M       N 
Sbjct: 260 VDMYSKCRRMVDAIKVSNLTPEYDVYLWTTLISGFTQNLQVREAISVFRDMELSGLLPNN 319

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQMPY----KNIAAQTAMISGYVQNKRMD-EANQIFD 350
            +++++++    I  LD   +   ++       ++    A++  Y++   +   A ++F 
Sbjct: 320 FTYSSLLNASSSILSLDLGEQFHSRVIIVGLEDDLYIGNALVDMYMKCSHITTNAVKVFR 379

Query: 351 KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM--------------------------- 383
           +I + +V+CW  +I G+A+  R++++  LF +M                           
Sbjct: 380 EITSPNVMCWTSLIAGFAE-KRLEDSFQLFAEMQAAGVRPNSFTMSAILGACSKTRSLVP 438

Query: 384 ------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFL 431
                       V+ DI   N ++  YA +  +D+A  +   M   R+++++  L +   
Sbjct: 439 TMMLHGHIIKTKVDIDIAVANALVDTYAGVGMIDEAWSVIGTM-NLRDSITYTCLAARLN 497

Query: 432 QNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLF 491
           Q   H  ALK+ + M  +G K D  +LA  LSA A L  ++ G+Q+H  ++KSG+     
Sbjct: 498 QKGHHGMALKVLIHMCNDGIKMDEFSLASFLSAAAGLGTMETGKQLHCYSVKSGFQRCHS 557

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
           V NSL+ +Y+KCG I +A   FKD    D  SWN LI+G++ NG  + A+  F++M + G
Sbjct: 558 VSNSLVHLYSKCGSIHDANRAFKDISEPDAFSWNGLISGFSWNGLISHALSTFDDMRLAG 617

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
           V PD +T + ++SACSH GL++ GL+ F  M + Y I P ++HY C++DLL R GRL+EA
Sbjct: 618 VKPDSITLLSLISACSHGGLLELGLEYFHSMQKEYHITPKLDHYMCLVDLLGRGGRLEEA 677

Query: 612 FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEA 671
             +++ M  KP++ I  TLL AC +H N+ LG     +  EL+P   + Y LL+N++  A
Sbjct: 678 MGVIEKMSFKPDSLICKTLLNACNLHGNVALGEDMARRCLELDPSDPAIYLLLANLYDNA 737

Query: 672 GRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           G  D  EK R  M   G ++ PG  W+E+++++H F +G+  +    EI   L+ L  + 
Sbjct: 738 GLSDFGEKTRRLMRERGLRRSPGQCWMEIRSRVHHFSAGE--KINEDEITEKLEFLITEF 795

Query: 732 RN 733
           RN
Sbjct: 796 RN 797


>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 216/786 (27%), Positives = 381/786 (48%), Gaps = 73/786 (9%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
           + A +  +  KG+ V      +    + G  E A K+F     +N + +NS +  +A  G
Sbjct: 50  LHAQMIKMPKKGNLVTMDGSMMRNYLEFGDFESATKVFFVGFARNYLLWNSFLEEFASFG 109

Query: 61  RVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARE---------------------- 98
              D+ ++ E   +             LH+  VK   +                      
Sbjct: 110 --GDSHEILEVFKE-------------LHDKGVKFDSKALTVVLKICLALMELWLGMEVH 154

Query: 99  --LFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNY 156
             L  + F+ D+     +I  Y +   +++A ++FD  P +ED   WN +V    +   +
Sbjct: 155 ACLLKRGFQVDVHLSCALINLYEKCLGIDRANQVFDETPLQEDFL-WNTIVMANLRSERW 213

Query: 157 NEAKKLLDAMPSKN----------IVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN 206
            +A +L   M S +          ++     L    +  ++H     F  +    +   N
Sbjct: 214 EDALELSRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSIC--N 271

Query: 207 LMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR---- 262
            ++  Y   + L+ A   F    + N+ SW +++S YA NG +  A  LF +M       
Sbjct: 272 SIVSMYSRNNRLELARAVFDSTEDHNLASWNSIISSYAVNGCLNGAWDLFREMESSSIKP 331

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMID-----GYVRIAKLDE 313
           +++ WN++++ ++ +G  E        +     + +  S T+ +      GY  + K   
Sbjct: 332 DIITWNSLLSGHLLQGSYENVLTNIRSLQSAGFKPDSCSITSALQAVIELGYFNLGKEIH 391

Query: 314 ARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRM 373
              +  ++ Y ++   T+++  Y++N  +++A  +F      ++  WN +I GY   G  
Sbjct: 392 GYIMRSKLEY-DVYVCTSLVDMYIKNDCLEKAEVVFHHTKNKNICAWNSLISGYTYKGLF 450

Query: 374 DEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIF---EEMGKRRNTVSWNAL 426
           D A  L  QM    +  D+VTWN++++GY+     ++A+ +    + +G   N VSW A+
Sbjct: 451 DNAEKLLIQMKEEGIKADLVTWNSLVSGYSMSGCSEEALAVINRIKSLGLTPNVVSWTAM 510

Query: 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
           ISG  QNE + DAL+ F  M +E  K + +T++  L ACA  + L+ G +IH  ++K G+
Sbjct: 511 ISGCCQNENYTDALQFFSQMQEENVKPNSTTISTLLRACAGPSLLKKGEEIHCFSMKHGF 570

Query: 487 VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEE 546
           V+D+++  +LI MY+K G+++ A  +F++     +  WN ++ GYAI G+  E   LF+ 
Sbjct: 571 VDDIYIATALIDMYSKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDN 630

Query: 547 MVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAG 606
           M   G+ PD +TF  +LS C + GLV  G K F+ M   Y+I P +EHY+CM+DLL +AG
Sbjct: 631 MCKTGIRPDAITFTALLSGCKNSGLVMDGWKYFDSMKTDYSINPTIEHYSCMVDLLGKAG 690

Query: 607 RLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSN 666
            LDEA + +  M  K +A IWG +L ACR+H++IK+  IA   L  LEP  ++ Y L+ N
Sbjct: 691 FLDEALDFIHAMPQKADASIWGAVLAACRLHKDIKIAEIAARNLFRLEPYNSANYVLMMN 750

Query: 667 MHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKT 726
           +++   RW +VE+++ SM   G +     SWI+V+  IH F +         EI   L  
Sbjct: 751 IYSTFERWGDVERLKESMTAMGVKIPNVWSWIQVRQTIHVFSTEGKSHPEEGEIYFDLYQ 810

Query: 727 LAAQIR 732
           L ++I+
Sbjct: 811 LISEIK 816


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 179/499 (35%), Positives = 283/499 (56%), Gaps = 10/499 (2%)

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE----RNPVSW 298
           Y    +++ ARRLFD++P  +V+ WN +I AY   G  + A  L+  M       N  ++
Sbjct: 53  YLSCNQVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTY 112

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPY----KNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
             ++     +  +++   +           ++   TA++  Y +   + EA ++F  +  
Sbjct: 113 PFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSH 172

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQ-MDDAVKIFEE 413
            DVV WN MI G +  G  D+A+ L  QM  + I   ++ I G     Q +  A KIF+ 
Sbjct: 173 RDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDV 232

Query: 414 MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQL 473
           MG R N VSW+A+I G++ ++   +AL IF +M   G   D +T+   L AC+HLAALQ 
Sbjct: 233 MGVR-NEVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQH 291

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           G   H   I  G+  D  + N+LI MY+KCG+I  A  +F   D  D++SWN++I GY I
Sbjct: 292 GFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGI 351

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVE 593
           +G   EA+ LF +++  G+ PD +TFI +LS+CSH GLV  G   F+ M+  ++I P +E
Sbjct: 352 HGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRME 411

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653
           H  CM+D+L RAG +DEA   ++ M  +P+  IW  LL ACR+H+NI+LG    +K+  L
Sbjct: 412 HCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSL 471

Query: 654 EPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPK 713
            P+ T  + LLSN+++ AGRWD+   +R++ +  G +K PGCSWIE+   +H F+ GD  
Sbjct: 472 GPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQS 531

Query: 714 QCRTAEICNTLKTLAAQIR 732
             + ++I   L+ L  +++
Sbjct: 532 HLQLSQINRKLEELLVEMK 550



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 145/331 (43%), Gaps = 22/331 (6%)

Query: 27  KSGRVEEAIKIFSQM----SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNS 82
           +S  + EA KI        S  ++   + +   Y    +V  AR+LF+++P  +++ WN 
Sbjct: 20  QSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQ 79

Query: 83  MIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFD---LLP 135
           +I  Y  N     A +L+  M     RP+ +++  ++   +    +E   E+     +  
Sbjct: 80  IIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFG 139

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
            + D     A+V  YAK G   EA++L  +M  +++V+WN+M++G +  G    A +   
Sbjct: 140 LESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIM 199

Query: 196 AMEERDVVSWNLMLDGYVE-LDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
            M+E  +   +  + G +     L  A K F  +  +N VSW  M+ GY  +  M EA  
Sbjct: 200 QMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALD 259

Query: 255 LFDQMPIRNV---------VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGY 305
           +F  M +  +         V       A +Q G       L +     + +    +ID Y
Sbjct: 260 IFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSH-GYLIVRGFATDTLICNALIDMY 318

Query: 306 VRIAKLDEARRLLDQMPYKNIAAQTAMISGY 336
            +  K+  AR + ++M   +I +  AMI GY
Sbjct: 319 SKCGKISFAREVFNRMDRHDIVSWNAMIIGY 349



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 97/418 (23%), Positives = 173/418 (41%), Gaps = 98/418 (23%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDA------- 65
           S VF     +    K G + EA ++FS MS ++ V +N+MI+  +  G  +DA       
Sbjct: 142 SDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQM 201

Query: 66  -------------------------RKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF 100
                                    RK+F+ M  RN VSW++MI GY+ +D +KEA ++F
Sbjct: 202 QEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIF 261

Query: 101 DKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKI 153
             M      PDL +   ++   +    L+        L  +    DT   NA++  Y+K 
Sbjct: 262 RMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKC 321

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV 213
           G  + A+++ + M   +IVSWN+M+ GY  +G    A   F      D+++  L  D   
Sbjct: 322 GKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFH-----DLLALGLKPDD-- 374

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
                               ++++ +LS  + +G ++E R  FD M              
Sbjct: 375 --------------------ITFICLLSSCSHSGLVMEGRLWFDAM-------------- 400

Query: 274 YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTAM 332
                     +R F  +P         M+D   R   +DEA   +  MP++ ++   +A+
Sbjct: 401 ----------SRDFSIVPRMEHC--ICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSAL 448

Query: 333 ISGYVQNKRMDEANQIFDKI---GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD 387
           +S    +K ++   ++  KI   G      + ++   Y+  GR D+A ++  ++  KD
Sbjct: 449 LSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHI--RITQKD 504


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 211/644 (32%), Positives = 338/644 (52%), Gaps = 59/644 (9%)

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME-----ER 200
           +V  YA +G+ + ++   D +  K++ +WNSM+S Y +NG    A   F  +      + 
Sbjct: 114 LVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQA 173

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ-NVVSWVTMLSGYARNGRMLEARRLFDQM 259
           D  ++  +L     L D      +  K+  Q +V    +++  Y+R G +  AR LFD M
Sbjct: 174 DFYTFPPVLKACQTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDM 233

Query: 260 PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMID-----GYVRIAK 310
           P R++ +WNAMI+  +Q G   +A  +  EM       + V+  +++      G +  A 
Sbjct: 234 PFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTAT 293

Query: 311 LDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC 370
           L     +   + ++ +    A+I+ Y +   + +A ++F ++   DVV WN +I  Y Q 
Sbjct: 294 LIHLYVIKHGLEFE-LFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQN 352

Query: 371 GRMDEAINLFRQM----VNKDIVT----------------------------W------- 391
                A   F +M    +  D++T                            W       
Sbjct: 353 DDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVI 412

Query: 392 -NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ-E 449
            N ++  YA++  +D A K+F  +   ++ VSWN LISG+ QN    +A++++ +M +  
Sbjct: 413 GNAVMDMYAKLGVIDSAHKVFNLI-PVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECR 471

Query: 450 GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA 509
             K +  T    L+A AH+ ALQ G +IH   IK+    D+FVG  LI +Y KCGR+ +A
Sbjct: 472 EIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDA 531

Query: 510 ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
             LF        + WN++I+ + I+G+  +A+KLF EM  EGV PD VTFI +LSACSH 
Sbjct: 532 MCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHS 591

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629
           GLVD G   F  M E Y I+P ++HY CM+DLL RAG L+ A++ +K M + P+A IWG 
Sbjct: 592 GLVDEGKWFFHLMQE-YGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGA 650

Query: 630 LLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689
           LLGACR+H NI+LG+ A ++L E++ +    Y LLSN++A  G+W+ V+KVR      G 
Sbjct: 651 LLGACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGL 710

Query: 690 QKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           +K PG S IEV  ++  F +G+    +  EI   L+ L A++++
Sbjct: 711 KKTPGWSSIEVNRRVDIFYTGNQSHPKCKEIYAELRILTAKMKS 754



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 153/604 (25%), Positives = 256/604 (42%), Gaps = 139/604 (23%)

Query: 33  EAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDK 92
            A+ + S   Q N ++   +++ YA  G V+ +R  F+Q+ ++++ +WNSMI+ Y+ N  
Sbjct: 96  HALLVVSGKIQSNFISIR-LVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGH 154

Query: 93  VKEARELFDKM-------------------------------------FRPDLFSWALMI 115
            +EA + F ++                                     F+ D+F  A +I
Sbjct: 155 FREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVDGRKIHCWVFKLGFQWDVFVAASLI 214

Query: 116 TCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI---- 171
             Y+R G +  AR LFD +P + D   WNAM++G  + GN  +A  +LD M  + I    
Sbjct: 215 HMYSRFGFVGIARSLFDDMPFR-DMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDS 273

Query: 172 ------------------------------------VSWNSMLSGYTKNGEMHLASKFFE 195
                                               VS N++++ Y K G +  A K F+
Sbjct: 274 VTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVS-NALINMYAKFGNLGDAQKVFQ 332

Query: 196 AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYA-----RN 246
            M  RDVVSWN ++  Y + DD  +A  FF K+     E ++++ V++ S  A     +N
Sbjct: 333 QMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKN 392

Query: 247 GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYV 306
            R +    +     +  VV  NA++  Y + G I+ A ++F  +P ++ VSW T+I GY 
Sbjct: 393 SRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYT 452

Query: 307 R----------IAKLDEARRL-LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
           +             ++E R + L+Q  + +I A  A +    Q  R+   +    K   H
Sbjct: 453 QNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRI---HGHLIKTNLH 509

Query: 356 -DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            DV     +I  Y +CGR+ +A+ LF Q+  +  V WN +I+ +      + A+K+F E 
Sbjct: 510 LDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFRE- 568

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
                                          M  EG K DH T    LSAC+H   +  G
Sbjct: 569 -------------------------------MQDEGVKPDHVTFISLLSACSHSGLVDEG 597

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYA 532
           +   HL  + G    L     ++ +  + G ++ A    KD  P+  D   W +L+    
Sbjct: 598 KWFFHLMQEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDM-PLHPDASIWGALLGACR 656

Query: 533 INGN 536
           I+GN
Sbjct: 657 IHGN 660



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 125/503 (24%), Positives = 217/503 (43%), Gaps = 99/503 (19%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           +F    Q +     S+I  Y++ G V  AR LF+ MP R++ SWN+MI+G + N    +A
Sbjct: 198 VFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQA 257

Query: 97  RELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKE----DTACWNAMVA 148
            ++ D+M       D  + A ++    + G++  A  L  L   K     +    NA++ 
Sbjct: 258 LDVLDEMRLEGINMDSVTVASILPVCAQLGDISTA-TLIHLYVIKHGLEFELFVSNALIN 316

Query: 149 GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----------- 197
            YAK GN  +A+K+   M  +++VSWNS+++ Y +N +   A  FF  M           
Sbjct: 317 MYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLT 376

Query: 198 ---------EERD--------------------VVSWNLMLDGYVELDDLDSAWKFFQKI 228
                    + RD                    VV  N ++D Y +L  +DSA K F  I
Sbjct: 377 LVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLI 436

Query: 229 PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFI 288
           P ++VVSW T++SGY +NG   EA  ++  M                     EE   +  
Sbjct: 437 PVKDVVSWNTLISGYTQNGLASEAIEVYRMM---------------------EECREI-- 473

Query: 289 EMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN----IAAQTAMISGYVQNKRMDE 344
              + N  +W +++  Y  +  L +  R+   +   N    +   T +I  Y +  R+ +
Sbjct: 474 ---KLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVD 530

Query: 345 ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQ 400
           A  +F ++     V WN +I  +   G  ++A+ LFR+M    V  D VT+ ++++  + 
Sbjct: 531 AMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSH 590

Query: 401 IRQMDDAVKIF---EEMGKRRNTVSWNALI-----SGFLQNEFHLDALKIFVLMTQEGKK 452
              +D+    F   +E G + +   +  ++     +GFL+  +  D +K   L       
Sbjct: 591 SGLVDEGKWFFHLMQEYGIKPSLKHYGCMVDLLGRAGFLEMAY--DFIKDMPL------H 642

Query: 453 ADHSTLACALSACAHLAALQLGR 475
            D S     L AC     ++LG+
Sbjct: 643 PDASIWGALLGACRIHGNIELGK 665



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 8/154 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF     I   GK GR+ +A+ +F Q+ ++++V +N++IS +  +G    A KLF +M  
Sbjct: 512 VFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQD 571

Query: 75  RNL----VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEK 126
             +    V++ S+++   H+  V E +  F  M     +P L  +  M+    R G LE 
Sbjct: 572 EGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQEYGIKPSLKHYGCMVDLLGRAGFLEM 631

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
           A +    +P   D + W A++      GN    K
Sbjct: 632 AYDFIKDMPLHPDASIWGALLGACRIHGNIELGK 665



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 6/162 (3%)

Query: 473 LGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYA 532
           L +++H L + SG +   F+   L+ +YA  G +  +   F      DV +WNS+I+ Y 
Sbjct: 91  LAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYV 150

Query: 533 INGNATEAIKLFEEMVM-EGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL 591
            NG+  EAI  F ++++      D  TF  VL AC    LVDG  +   C       +  
Sbjct: 151 RNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQ--TLVDG--RKIHCWVFKLGFQWD 206

Query: 592 VEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
           V   A +I + SR G +  A  +   M  + + G W  ++  
Sbjct: 207 VFVAASLIHMYSRFGFVGIARSLFDDMPFR-DMGSWNAMISG 247


>gi|297736926|emb|CBI26127.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 192/581 (33%), Positives = 286/581 (49%), Gaps = 92/581 (15%)

Query: 244 ARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PERNPVS 297
           A+ GR+  ARRLFD+MP ++ VAWNAM+A+Y Q G  ++A  LF  M      P+R   +
Sbjct: 16  AKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANSRPDRFTFT 75

Query: 298 WT---------------------------------TMIDGYVRIAKLDEARRLLDQMPYK 324
            T                                 ++ID Y +      ARR+ ++M   
Sbjct: 76  ATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSARRVFEEMSIM 135

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
           N  +  +++  Y  +   D A  +FD +     + WN+MI GY QCG ++  + LF++M 
Sbjct: 136 NEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCLGLFKKMR 195

Query: 385 NKDI--------------------------------------------------VTWNTM 394
              +                                                  V+WN M
Sbjct: 196 EDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWDDVMKVFESIGILTQVSWNAM 255

Query: 395 IAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
           I  + +I    +A  +F+ +   +N VSW ++I+G+ +N     AL  FV M +   + D
Sbjct: 256 IDAHMKIGDTHEAFLVFQ-LAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQPD 314

Query: 455 HSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
             T    L AC+ LA L  G+ IH   I  G+   + VGN L+ MYAKCG IQ +   FK
Sbjct: 315 DFTFGAVLHACSSLATLGHGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQGSNTAFK 374

Query: 515 DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574
           +    D++SWN+++ G  ++G+AT+A++L+EEMV  G+ PD VTFIG+L  CSH GL++ 
Sbjct: 375 EILGKDLVSWNAMLFGLGMHGHATQALELYEEMVASGMKPDKVTFIGLLMTCSHSGLIEK 434

Query: 575 GLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVK--GMKIKPNAGIWGTLLG 632
           G  LFE M  VY +    EH  CM+DLL R G L +A E+V       +    +   LLG
Sbjct: 435 GQALFESMVSVYGLSQETEHVVCMVDLLGRGGYLAQARELVDEYSRTGRAETSLPEALLG 494

Query: 633 ACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQ 692
           AC  H  +++G    E L   EPQK   Y LLSN++  +G+W E E VR +M   G +K 
Sbjct: 495 ACFAHSEVRMGANLGEYLKVFEPQKEMSYVLLSNLYCVSGQWKEAEMVRKTMTDHGVKKM 554

Query: 693 PGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           PGCSWIEV+N++  F++G+       E+C  L  L  ++RN
Sbjct: 555 PGCSWIEVRNKVTVFVAGNHSHPYMEELCKILNFLKFEMRN 595



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 110/468 (23%), Positives = 192/468 (41%), Gaps = 94/468 (20%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S++F    KI  L K GR+  A ++F +M  K+TV +N+M+++Y++ G    A  LF  M
Sbjct: 3   SHLFQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHM 62

Query: 73  ------PQR---------------------------------NLVSWNSMIAGYLHNDKV 93
                 P R                                 +L   NS+I  Y      
Sbjct: 63  RIANSRPDRFTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSA 122

Query: 94  KEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKI 153
             AR +F++M   +  SW  ++  YT  G  + AR +FD +P K + A WN M++GY + 
Sbjct: 123 TSARRVFEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIA-WNIMISGYGQC 181

Query: 154 GNYNEAKKLLDAMPSKNI-------------------VSWNSMLSGYTKNGEMHLASKFF 194
           G+      L   M   ++                    S+  M+ G+          K F
Sbjct: 182 GDVELCLGLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWDDVMKVF 241

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
           E++     VSWN M+D ++++ D   A+  FQ  PE+NVVSW +M++GYARNG   +A  
Sbjct: 242 ESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALS 301

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
            F +M   ++                           + +  ++  ++     +A L   
Sbjct: 302 FFVKMMENHI---------------------------QPDDFTFGAVLHACSSLATLGHG 334

Query: 315 RRLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC 370
           + +   + +    A       +++ Y +   +  +N  F +I   D+V WN M+ G    
Sbjct: 335 KMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQGSNTAFKEILGKDLVSWNAMLFGLGMH 394

Query: 371 GRMDEAINLFRQMV----NKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           G   +A+ L+ +MV      D VT+  ++   +    ++    +FE M
Sbjct: 395 GHATQALELYEEMVASGMKPDKVTFIGLLMTCSHSGLIEKGQALFESM 442



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 96/427 (22%), Positives = 169/427 (39%), Gaps = 90/427 (21%)

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
           + ++   T+ I    +  R+  A ++FD++   D V WN M+  Y+Q G   +A+ LF  
Sbjct: 2   HSHLFQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHH 61

Query: 383 M---------------------------------------VNKDIVTWNTMIAGYAQIRQ 403
           M                                           +   N++I  Y +   
Sbjct: 62  MRIANSRPDRFTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLS 121

Query: 404 MDDAVKIFEEMG------------------------------KRRNTVSWNALISGFLQN 433
              A ++FEEM                                ++  ++WN +ISG+ Q 
Sbjct: 122 ATSARRVFEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQC 181

Query: 434 EFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY--VNDLF 491
                 L +F  M ++  + D  T +  ++A   L     G  +H   IKSG+  V  +F
Sbjct: 182 GDVELCLGLFKKMREDSLQPDQWTFSALVNALCELQEPSYGYMMHGFIIKSGWDDVMKVF 241

Query: 492 --VG-------NSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIK 542
             +G       N++I  + K G    A L+F+ A   +V+SW S+I GYA NG+  +A+ 
Sbjct: 242 ESIGILTQVSWNAMIDAHMKIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALS 301

Query: 543 LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLL 602
            F +M+   + PD  TF  VL ACS +  +  G K+       Y     V+    ++++ 
Sbjct: 302 FFVKMMENHIQPDDFTFGAVLHACSSLATLGHG-KMIHGSIIHYGFHAYVDVGNGLVNMY 360

Query: 603 SRAGRL---DEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL--SELEPQK 657
           ++ G +   + AF+ + G  +      W  +L    MH +        E++  S ++P K
Sbjct: 361 AKCGDIQGSNTAFKEILGKDLVS----WNAMLFGLGMHGHATQALELYEEMVASGMKPDK 416

Query: 658 TSCYALL 664
            +   LL
Sbjct: 417 VTFIGLL 423


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 188/550 (34%), Positives = 306/550 (55%), Gaps = 21/550 (3%)

Query: 190 ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPE----QNVVSWVTMLSGYAR 245
           A   FE ++E +++ WN M  G+    D  +A K +  +       N  S+  +L   A+
Sbjct: 18  AISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAK 77

Query: 246 NGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTM 301
           +  ++E +++   +       ++    ++I+ Y Q G++E+A ++F     R+ VS+T +
Sbjct: 78  SKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTAL 137

Query: 302 IDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF-DKIGTHDVVCW 360
           I GY     ++ AR+L D++  K++ +  AMISGYV+     EA +++ D + T+     
Sbjct: 138 ITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDE 197

Query: 361 NVMIKGYAQCGRMDEAINLFRQM--------VNKDIVTWNTMIAGYAQIRQMDDAVKIFE 412
           + M+   + C +   +I L RQ+           +I   N +I  Y++  +++ A  +F+
Sbjct: 198 STMVTVVSACAQ-SGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQ 256

Query: 413 EMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQ 472
            + K+ + +SWN LI G      + +AL +F  M + G+  +  T+   L ACAHL A+ 
Sbjct: 257 GLAKK-DVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAID 315

Query: 473 LGRQIHHLAIK--SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
           +GR IH    K   G  N   +  SLI MYAKCG I+ A+ +F       + SWN++I G
Sbjct: 316 IGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFG 375

Query: 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP 590
           +A++G A  A  LF +M   G+ PD +TF+G+LSACSH G++D G  +F  M++ Y I P
Sbjct: 376 FAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITP 435

Query: 591 LVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL 650
            +EHY CMIDLL   G   EA EM++ M ++P+  IW +LL AC+MH N++LG    + L
Sbjct: 436 KLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNL 495

Query: 651 SELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSG 710
            ++EP+    Y LLSN++A AGRWD+V K+R  +   G +K PGCS IE+ + +H F+ G
Sbjct: 496 IKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVHEFIIG 555

Query: 711 DPKQCRTAEI 720
           D    R  EI
Sbjct: 556 DKFHPRNREI 565



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 142/590 (24%), Positives = 250/590 (42%), Gaps = 101/590 (17%)

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMI-TCYT 119
           A  +FE + + NL+ WN+M  G+  N     A +L+  M      P+ +S+  ++ +C  
Sbjct: 18  AISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAK 77

Query: 120 RKGELEKARELFDLLPNKEDTACW--NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSM 177
            K  +E  +    +L    D   +   ++++ YA+ G   +A K+ D    +++VS+ ++
Sbjct: 78  SKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTAL 137

Query: 178 LSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV---- 233
           ++GY   G ++ A K F+ +  +DVVSWN M+ GYVE  +   A + ++ + + NV    
Sbjct: 138 ITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDE 197

Query: 234 VSWVTMLSGYARNGRMLEARRLF----DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIE 289
            + VT++S  A++G +   R+L     D     N+   N +I  Y + G++E A  LF  
Sbjct: 198 STMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQG 257

Query: 290 MPERNPVSWTTMIDGYVRIAKLDEARRLLDQM----PYKNIAAQTAMISGYVQNKRMDEA 345
           + +++ +SW T+I G+  +    EA  L  +M       N     +++        +D  
Sbjct: 258 LAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIG 317

Query: 346 NQIFDKIG------THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYA 399
             I   I       T+       +I  YA+CG ++ A  +F  M+ + + +WN MI G+A
Sbjct: 318 RWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFA 377

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
              + + A  +F +M  R+N                              G   D  T  
Sbjct: 378 MHGKANAAFDLFSKM--RKN------------------------------GIDPDDITFV 405

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGY--VNDLFVGNSLITMYAKCGRIQNAELLFKDAD 517
             LSAC+H   L LGR I   ++   Y     L     +I +   CG       LFK   
Sbjct: 406 GLLSACSHSGMLDLGRHIFR-SMSQDYKITPKLEHYGCMIDLLGHCG-------LFK--- 454

Query: 518 PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLK 577
                                EA ++   M ME   PD V +  +L AC     V+ G  
Sbjct: 455 ---------------------EAKEMIRTMPME---PDGVIWCSLLKACKMHNNVELGES 490

Query: 578 LFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV-----KGMKIKP 622
             + + ++    P    Y  + ++ + AGR D+  ++      KG+K  P
Sbjct: 491 YAQNLIKIEPENP--GSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAP 538



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 186/396 (46%), Gaps = 48/396 (12%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           I+   ++GR+E+A K+F + S ++ V+Y ++I+ YA  G +N+ARKLF+++  +++VSWN
Sbjct: 107 ISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWN 166

Query: 82  SMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
           +MI+GY+     KEA EL+  M     +PD  +   +++   + G +E  R+L   + + 
Sbjct: 167 AMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDH 226

Query: 138 ---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
               +    N ++  Y+K G    A  L   +  K+++SWN+++ G+T       A   F
Sbjct: 227 GFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLF 286

Query: 195 EAM----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ-----NVVSWVT-MLSGYA 244
           + M    E  + V+   +L     L  +D        I ++     N  S +T ++  YA
Sbjct: 287 QEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYA 346

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTT 300
           + G +  A+++FD M  R++ +WNAMI  +   G+   A  LF +M +     + +++  
Sbjct: 347 KCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVG 406

Query: 301 MIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW 360
           ++        LD  R +   M      +Q   I+  +++                    +
Sbjct: 407 LLSACSHSGMLDLGRHIFRSM------SQDYKITPKLEH--------------------Y 440

Query: 361 NVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMI 395
             MI     CG   EA  + R M +  D V W +++
Sbjct: 441 GCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLL 476



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 155/336 (46%), Gaps = 28/336 (8%)

Query: 14  YVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP 73
           +V +    IT     G +  A K+F ++S K+ V++N+MIS Y +     +A +L++ M 
Sbjct: 130 HVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMM 189

Query: 74  QRNL----VSWNSMIAGYLHNDKVKEARELF----DKMFRPDLFSWALMITCYTRKGELE 125
           + N+     +  ++++    +  ++  R+L     D  F  ++    ++I  Y++ GE+E
Sbjct: 190 KTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVE 249

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA----KKLLDAMPSKNIVSWNSMLSGY 181
            A  LF  L  K+D   WN ++ G+  +  Y EA    +++L +  S N V+  S+L   
Sbjct: 250 TACGLFQGLA-KKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPAC 308

Query: 182 TKNGEMHLASKFFEAMEERDVVSWNL------MLDGYVELDDLDSAWKFFQKIPEQNVVS 235
              G + +       + +R     N       ++D Y +  D+++A + F  +  +++ S
Sbjct: 309 AHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSS 368

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMP 291
           W  M+ G+A +G+   A  LF +M    +    + +  +++A    G ++    +F  M 
Sbjct: 369 WNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMS 428

Query: 292 ERNPVS-----WTTMIDGYVRIAKLDEARRLLDQMP 322
           +   ++     +  MID         EA+ ++  MP
Sbjct: 429 QDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMP 464


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 191/611 (31%), Positives = 324/611 (53%), Gaps = 55/611 (9%)

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
           N +L+ Y ++G + LA + F+AM + ++ + N +L        L    + F  +P+++ V
Sbjct: 49  NHLLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALAHARLLPDMDRLFASMPQRDAV 108

Query: 235 SWVTMLSGYARNGR----------MLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEA 283
           S+  +++G++  G           +L    + D   +R + +  + M+ A    G     
Sbjct: 109 SYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMSGMVMAASALGDRALG 168

Query: 284 ARLFIEMPERN----PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQN 339
            ++  ++          +W+ ++D Y ++  + +A+R+ D+M  KN+     MI+G ++ 
Sbjct: 169 RQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTMITGLLRC 228

Query: 340 KRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMI 395
           K ++EA  +F+ +   D + W  M+ G  Q G   EA+++FR+M    V  D  T+ +++
Sbjct: 229 KMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSIL 288

Query: 396 AG-----------------------------------YAQIRQMDDAVKIFEEMGKRRNT 420
                                                Y++ R +  A  +F  M   +N 
Sbjct: 289 TACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRM-TCKNI 347

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
           +SW A+I G+ QN    +A+++F  M  +G K +  TL   +S+CA+LA+L+ G Q H +
Sbjct: 348 ISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFHCM 407

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEA 540
           A+ SG    + V ++L+T+Y KCG I++A  LF +    D +S+ +L++GYA  G A E 
Sbjct: 408 ALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKET 467

Query: 541 IKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMID 600
           I LFE+M+++GV P+ VTFIGVLSACS  GLV+ G   F  M + + I  L +HY CMID
Sbjct: 468 IDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMID 527

Query: 601 LLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSC 660
           L SR+GRL EA E ++ M   P+A  W TLL ACR+  ++++G+ A E L + +PQ  + 
Sbjct: 528 LYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTDPQNPAS 587

Query: 661 YALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           Y LL +MHA  G W EV  +R  M     +K+PGCSWI+ KN++H F + D     +  I
Sbjct: 588 YVLLCSMHASKGEWSEVALLRRGMRDRQVKKEPGCSWIKYKNRVHIFSADDQSHPFSGTI 647

Query: 721 CNTLKTLAAQI 731
              L+ L +++
Sbjct: 648 YEKLQWLNSKM 658



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 117/476 (24%), Positives = 218/476 (45%), Gaps = 71/476 (14%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           +YV N    +T   +SGR+  A ++F  M   N  T N+++SA A    + D  +LF  M
Sbjct: 45  TYVLNH--LLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALAHARLLPDMDRLFASM 102

Query: 73  PQRNLVSWNSMIAGYLHNDK-----------VKEARELFDKMFRPDLFSWALMITCYTRK 121
           PQR+ VS+N++IAG+                ++E   +     RP   + + M+   +  
Sbjct: 103 PQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMSGMVMAASAL 162

Query: 122 GELEKARELFDLLPNKEDTA---CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSML 178
           G+    R++   +      A    W+ +V  YAK+G   +AK++ D M  KN+V +N+M+
Sbjct: 163 GDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTMI 222

Query: 179 SGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ------- 231
           +G  +   +  A   FEAM +RD ++W  M+ G  +      A   F+++  +       
Sbjct: 223 TGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQY 282

Query: 232 --------------------------------NVVSWVTMLSGYARNGRMLEARRLFDQM 259
                                           N+     ++  Y++   +  A  +F +M
Sbjct: 283 TFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRM 342

Query: 260 PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEAR 315
             +N+++W AMI  Y Q G  EEA R+F EM     + N  +  ++I     +A L+E  
Sbjct: 343 TCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGA 402

Query: 316 R-----LLDQM-PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ 369
           +     L+  + PY  I   +A+++ Y +   +++A+++FD++  HD V +  ++ GYAQ
Sbjct: 403 QFHCMALVSGLRPY--ITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQ 460

Query: 370 CGRMDEAINLFRQMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
            G+  E I+LF +M+ K +    VT+  +++  ++   ++     F  M +    V
Sbjct: 461 FGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIV 516



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 181/410 (44%), Gaps = 56/410 (13%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G+Y F  +  +    K G + +A ++F +M  KN V YN+MI+   +   V +AR +FE 
Sbjct: 181 GAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEA 240

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKA 127
           M  R+ ++W +M+ G   N    EA ++F +M       D +++  ++T        E+ 
Sbjct: 241 MVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEG 300

Query: 128 --------RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLS 179
                   R L+D      +    +A+V  Y+K  +   A+ +   M  KNI+SW +M+ 
Sbjct: 301 KQIHAYTIRTLYD-----GNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIV 355

Query: 180 GYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE----LDDLDSAWKFFQKIPEQNVVS 235
           GY +NG    A + F  M+   +   +  L   +     L  L+   +F        +  
Sbjct: 356 GYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRP 415

Query: 236 WVTMLSG----YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM- 290
           ++T+ S     Y + G + +A RLFD+MP  + V++ A+++ Y Q G+ +E   LF +M 
Sbjct: 416 YITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKML 475

Query: 291 ---PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347
               + N V++  ++    R   +++                      Y  + + D    
Sbjct: 476 LKGVKPNGVTFIGVLSACSRSGLVEKG-------------------CSYFHSMQQDHGIV 516

Query: 348 IFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN-KDIVTWNTMIA 396
           + D    H    +  MI  Y++ GR+ EA    RQM    D + W T+++
Sbjct: 517 LLDD---H----YTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLS 559


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 201/652 (30%), Positives = 333/652 (51%), Gaps = 97/652 (14%)

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKK-----LLDAMPSKNIVSWNSMLSG---YT 182
           FD + N+ D   WN M++GY + GN +E  +     +L +  + +  ++ S+L       
Sbjct: 42  FDHIQNR-DVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVI 100

Query: 183 KNGEMH-LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
              ++H LA KF              M D YV                        +++ 
Sbjct: 101 DGNKIHCLALKF------------GFMWDVYVA----------------------ASLIH 126

Query: 242 GYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTM 301
            Y+R   +  AR LFD+MP+R++ +WNAMI+ Y Q G  +EA  L   +   + V+  ++
Sbjct: 127 LYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSL 186

Query: 302 IDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWN 361
           +         +           + +   +  I   ++++ + +  ++FD++   D++ WN
Sbjct: 187 LSACTEAGDFN-----------RGVTIHSYSIKHGLESELLRDCQKVFDRMYVRDLISWN 235

Query: 362 VMIKGYAQCGRMDEAINLFRQM-------------------------------------- 383
            +IK Y    +   AI+LF++M                                      
Sbjct: 236 SIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRK 295

Query: 384 --VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALK 441
               +DI   N ++  YA++  +D A  +F  +    + +SWN +ISG+ QN F  +A++
Sbjct: 296 GWFLEDITIGNAVVVMYAKLGLVDSARAVFNWL-PNTDVISWNTIISGYAQNGFASEAIE 354

Query: 442 IFVLMTQEGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500
           ++ +M +EG+  A+  T    L AC+   AL+ G ++H   +K+G   D+FV  SL  MY
Sbjct: 355 MYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMY 414

Query: 501 AKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
            KCGR+++A  LF     V+ + WN+LIA +  +G+  +A+ LF+EM+ EGV PD +TF+
Sbjct: 415 GKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFV 474

Query: 561 GVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKI 620
            +LSACSH GLVD G   FE M   Y I P ++HY CM+D+  RAG+L+ A + +K M +
Sbjct: 475 TLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSL 534

Query: 621 KPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKV 680
           +P+A IWG LL ACR+H N+ LG+IA E L E+EP+    + LLSNM+A AG+W+ V+++
Sbjct: 535 QPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEI 594

Query: 681 RVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           R    G G +K PG S +EV N++  F +G+       E+   L  L A+++
Sbjct: 595 RSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLK 646



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 144/607 (23%), Positives = 254/607 (41%), Gaps = 112/607 (18%)

Query: 35  IKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGY------- 87
           + +F+  S    +     +S +            F+ +  R++ +WN MI+GY       
Sbjct: 8   LMMFTHFSDIALICNQPNVSTHVSLSPNKSKMHTFDHIQNRDVYAWNLMISGYGRAGNSS 67

Query: 88  --------------LHNDK------VKEARELFDKM----------FRPDLFSWALMITC 117
                         L  D       +K  R + D            F  D++  A +I  
Sbjct: 68  EVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHL 127

Query: 118 YTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSM 177
           Y+R   +  AR LFD +P + D   WNAM++GY + GN  EA  L + + + + V+  S+
Sbjct: 128 YSRYKAVGNARILFDEMPVR-DMGSWNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSL 186

Query: 178 LSGYTKNGE------MHLAS--------------KFFEAMEERDVVSWNLMLDGYVELDD 217
           LS  T+ G+      +H  S              K F+ M  RD++SWN ++  Y   + 
Sbjct: 187 LSACTEAGDFNRGVTIHSYSIKHGLESELLRDCQKVFDRMYVRDLISWNSIIKAYELNEQ 246

Query: 218 LDSAWKFFQKI------PE-QNVVSWVTMLS--GYARNGRMLEARRLFDQMPIRNVVAWN 268
              A   FQ++      P+   ++S  ++LS  G  R  R ++   L     + ++   N
Sbjct: 247 PLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGN 306

Query: 269 AMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN-IA 327
           A++  Y + G ++ A  +F  +P  + +SW T+I GY +     EA  + + M  +  IA
Sbjct: 307 AVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIA 366

Query: 328 AQ----TAMISGYVQNKRMDEANQIFDKI---GTH-DVVCWNVMIKGYAQCGRMDEAINL 379
           A      +++    Q   + +  ++  ++   G + DV     +   Y +CGR+++A++L
Sbjct: 367 ANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSL 426

Query: 380 FRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDA 439
           F Q+   + V WNT+IA +      + AV +F+EM                      LD 
Sbjct: 427 FYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEM----------------------LD- 463

Query: 440 LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ-IHHLAIKSGYVNDLFVGNSLIT 498
                    EG K DH T    LSAC+H   +  G+     +    G    L     ++ 
Sbjct: 464 ---------EGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVD 514

Query: 499 MYAKCGRIQNAELLFKDAD-PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
           MY + G+++ A    K      D   W +L++   ++GN  +  K+  E + E V P+ V
Sbjct: 515 MYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGN-VDLGKIASEHLFE-VEPEHV 572

Query: 558 TFIGVLS 564
            +  +LS
Sbjct: 573 GYHVLLS 579



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 103/421 (24%), Positives = 189/421 (44%), Gaps = 70/421 (16%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVN--------------- 63
           N  I+   +SG  +EA+ + + +   ++VT  S++SA  + G  N               
Sbjct: 153 NAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLE 212

Query: 64  -----DARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALM 114
                D +K+F++M  R+L+SWNS+I  Y  N++   A  LF +M     +PD  +   +
Sbjct: 213 SELLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISL 272

Query: 115 ITCYTRKGELEKARELFDLLPNK----EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN 170
            +  ++ G++   R +      K    ED    NA+V  YAK+G  + A+ + + +P+ +
Sbjct: 273 ASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTD 332

Query: 171 IVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV-----SWNLMLDGYVELDDLDSAWKFF 225
           ++SWN+++SGY +NG    A + +  MEE   +     +W  +L    +   L    K  
Sbjct: 333 VISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLH 392

Query: 226 QKIPEQNV---VSWVTMLSG-YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIE 281
            ++ +  +   V  VT L+  Y + GR+ +A  LF Q+P  N V WN +IA +   G  E
Sbjct: 393 GRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGE 452

Query: 282 EAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKR 341
           +A  LF EM                    LDE  +  D + +        ++S    +  
Sbjct: 453 KAVMLFKEM--------------------LDEGVK-PDHITF------VTLLSACSHSGL 485

Query: 342 MDEANQIFDKIGTHDVVC-----WNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMI 395
           +DE    F+ + T   +      +  M+  Y + G+++ A+   + M +  D   W  ++
Sbjct: 486 VDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALL 545

Query: 396 A 396
           +
Sbjct: 546 S 546



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 119/494 (24%), Positives = 217/494 (43%), Gaps = 68/494 (13%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFS 110
           S+I  Y++   V +AR LF++MP R++ SWN+MI+GY  +   KEA  L + +   D  +
Sbjct: 123 SLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDSVT 182

Query: 111 WALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYA-KIGNYNE----AKKLLDA 165
              +++  T  G+  +                    +  Y+ K G  +E     +K+ D 
Sbjct: 183 VVSLLSACTEAGDFNRG-----------------VTIHSYSIKHGLESELLRDCQKVFDR 225

Query: 166 MPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDD---- 217
           M  ++++SWNS++  Y  N +   A   F+ M     + D ++   +     +L D    
Sbjct: 226 MYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRAC 285

Query: 218 -------LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAM 270
                  L   W F + I   N V  V M   YA+ G +  AR +F+ +P  +V++WN +
Sbjct: 286 RSVQGFTLRKGW-FLEDITIGNAV--VVM---YAKLGLVDSARAVFNWLPNTDVISWNTI 339

Query: 271 IAAYVQRGQIEEAARLFIEMPERNPV-----SWTTMIDGYVRIAKLDEAR----RLLDQM 321
           I+ Y Q G   EA  ++  M E   +     +W +++    +   L +      RLL   
Sbjct: 340 ISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNG 399

Query: 322 PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
            Y ++   T++   Y +  R+++A  +F +I   + V WN +I  +   G  ++A+ LF+
Sbjct: 400 LYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFK 459

Query: 382 QM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM----GKRRNTVSWNALISGFLQN 433
           +M    V  D +T+ T+++  +    +D+    FE M    G   +   +  ++  + + 
Sbjct: 460 EMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRA 519

Query: 434 EFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR--QIHHLAIKSGYVNDLF 491
                ALK    M+ +    D S     LSAC     + LG+    H   ++  +V    
Sbjct: 520 GQLETALKFIKSMSLQ---PDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHV 576

Query: 492 VGNSLITMYAKCGR 505
           +   L  MYA  G+
Sbjct: 577 L---LSNMYASAGK 587


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 221/756 (29%), Positives = 369/756 (48%), Gaps = 75/756 (9%)

Query: 56  YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM--------FRPD 107
           Y K GR+ DA +LF+ MP R + SWN++I   L +    EA  ++  M          PD
Sbjct: 103 YGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPD 162

Query: 108 LFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLD 164
             + A ++     +G+     E+  L         T   NA+V  YAK G  + A ++ +
Sbjct: 163 GCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFE 222

Query: 165 AM-PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL-----MLDGYVELDDL 218
            M   +++ SWNS +SG  +NG    A   F  M+  D  S N      +L    EL  L
Sbjct: 223 WMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQS-DGFSMNSYTTVGVLQVCAELAQL 281

Query: 219 DSAWKF---FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
           +   +      K   +  +    +L  YAR G +  A R+F ++  ++ ++WN+M++ YV
Sbjct: 282 NHGRELHAALLKCGTEFNIQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYV 341

Query: 276 QRGQIEEAARLFIEMPER--NP--VSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIA 327
           Q     EA   F EM +   NP      +++     + +L   R +    + Q    ++ 
Sbjct: 342 QNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQ 401

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK- 386
               ++  Y++   ++ + ++FD++   D V W  +I  YAQ  R  EAI  FR    + 
Sbjct: 402 IANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEG 461

Query: 387 -------------------------------------DIVTWNTMIAGYAQIRQMDDAVK 409
                                                D++  N +I  Y +  ++  A+ 
Sbjct: 462 IKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLLDLILKNRIIDIYGECGEVCYALN 521

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           IFE + K+ + V+W ++++ F +N    +A+ +F  M   G + D   L   L A A L+
Sbjct: 522 IFEMLDKK-DIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLS 580

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
           +L  G++IH   I+  +  +  V +SL+ MY+ CG +  A  +F +A   DV+ W ++I 
Sbjct: 581 SLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMIN 640

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE 589
              ++G+  +AI +F+ M+  GV+PD V+F+ +L ACSH  LVD G    + M   Y ++
Sbjct: 641 ATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQ 700

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649
           P  EHYAC++DLL R+G+ +EA++ +K M ++P + +W  LLGACR+H+N +L  IA +K
Sbjct: 701 PWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDK 760

Query: 650 LSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLS 709
           L ELEP     Y L+SN+ AE G+W+ V+++R  M   G +K P CSWIE+ N +HTF +
Sbjct: 761 LLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTA 820

Query: 710 GDPK-------QCRTAEICNTLKTLAAQIRNTPLAV 738
            D           + AEI   L+     + +T   +
Sbjct: 821 RDHSHRDSQAIHLKLAEITEKLRREGQYVEDTSFVL 856



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/431 (25%), Positives = 174/431 (40%), Gaps = 121/431 (28%)

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW 298
           +L  Y + GR+ +A RLFD MP R V +WNA+I A +  G   EA  ++  M    PV+ 
Sbjct: 99  LLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAG 158

Query: 299 T-------------------------------------------TMIDGYVRIAKLDEAR 315
                                                        ++  Y +   LD A 
Sbjct: 159 AAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSAL 218

Query: 316 RLLDQM-PYKNIAAQTAMISGYVQNKRMDEANQIFD------------------------ 350
           R+ + M   +++A+  + ISG VQN    EA  +F                         
Sbjct: 219 RVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAEL 278

Query: 351 --------------KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIA 396
                         K GT   +  N ++  YA+CG +D A+ +FR++ +KD ++WN+M++
Sbjct: 279 AQLNHGRELHAALLKCGTEFNIQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLS 338

Query: 397 GYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHS 456
            Y Q R   +A+  F E                                M Q G   DH+
Sbjct: 339 CYVQNRLYAEAIDFFGE--------------------------------MVQNGFNPDHA 366

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
            +   LSA  HL  L  GR++H  A+K    +DL + N+L+ MY KC  ++ +  +F   
Sbjct: 367 CIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRM 426

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGL 576
              D +SW ++IA YA +   +EAI  F     EG+  DP+    +L ACS       GL
Sbjct: 427 RIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACS-------GL 479

Query: 577 KLFECMTEVYA 587
           K    + +V++
Sbjct: 480 KSISLLKQVHS 490



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/390 (26%), Positives = 181/390 (46%), Gaps = 48/390 (12%)

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV 358
           T ++  Y +  +L +A RL D MP + + +  A+I   + +    EA  ++  +   + V
Sbjct: 97  TKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPV 156

Query: 359 -------CWNVMI------KGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMD 405
                  C    +      +G  +CG     + + +  +++  +  N ++  YA+   +D
Sbjct: 157 AGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAV-KSGLDRSTLVANALVGMYAKCGLLD 215

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
            A+++FE M   R+  SWN+ ISG +QN   L+AL +F  M  +G   +  T    L  C
Sbjct: 216 SALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVC 275

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
           A LA L  GR++H   +K G   ++   N+L+ MYA+CG + +A  +F++    D ISWN
Sbjct: 276 AELAQLNHGRELHAALLKCGTEFNIQC-NALLVMYARCGWVDSALRVFREIGDKDYISWN 334

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG--------------- 570
           S+++ Y  N    EAI  F EMV  G  PD    + +LSA  H+G               
Sbjct: 335 SMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQ 394

Query: 571 -----------LVDGGLKLF--ECMTEVYAIEPLVEH--YACMIDLLSRAGRLDEA---F 612
                      L+D  +K +  EC   V+    + +H  +  +I   +++ R  EA   F
Sbjct: 395 RLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKF 454

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKL 642
              +   IK +  + G++L AC   ++I L
Sbjct: 455 RTAQKEGIKVDPMMMGSILEACSGLKSISL 484



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/403 (19%), Positives = 176/403 (43%), Gaps = 26/403 (6%)

Query: 47  VTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM--- 103
           +  N+++  YA+ G V+ A ++F ++  ++ +SWNSM++ Y+ N    EA + F +M   
Sbjct: 300 IQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQN 359

Query: 104 -FRPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEA 159
            F PD      +++     G L   RE+      +    D    N ++  Y K  +   +
Sbjct: 360 GFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECS 419

Query: 160 KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLD 219
            ++ D M  K+ VSW ++++ Y ++     A   F   ++  +    +M+   +E     
Sbjct: 420 ARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGL 479

Query: 220 SAWKFFQKIPEQNVVSWVT-------MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
            +    +++    + + +        ++  Y   G +  A  +F+ +  +++V W +M+ 
Sbjct: 480 KSISLLKQVHSYAIRNGLLDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVN 539

Query: 273 AYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA 328
            + + G + EA  LF +M     + + V+   ++     ++ L + + +   +       
Sbjct: 540 CFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPV 599

Query: 329 QTAMISG----YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM- 383
           + A++S     Y     M+ A ++FD+    DVV W  MI      G   +AI +F++M 
Sbjct: 600 EGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRML 659

Query: 384 ---VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
              V+ D V++  ++   +  + +D+     + M  +     W
Sbjct: 660 ETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPW 702



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 84/180 (46%), Gaps = 24/180 (13%)

Query: 470 ALQLGRQIHHLAIKSGYVND---LFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNS 526
           A+  GRQ+H  A+ +G + D    F+   L+ MY KCGR+ +A  LF       V SWN+
Sbjct: 70  AVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNA 129

Query: 527 LIAGYAINGNATEAIKLFEEM----VMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           LI     +G A EA+ ++  M     + G APD  T   VL AC   G  DG      C 
Sbjct: 130 LIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEG--DG-----RCG 182

Query: 583 TEVYAI--------EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGAC 634
           +EV+ +          LV +   ++ + ++ G LD A  + + M+   +   W + +  C
Sbjct: 183 SEVHGLAVKSGLDRSTLVAN--ALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGC 240



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 139/335 (41%), Gaps = 53/335 (15%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           +N+ I   G+ G V  A+ IF  + +K+ VT+ SM++ +A+NG +++A  LF +M     
Sbjct: 503 KNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKM----- 557

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
                                  +   +PD  +   ++        L K +E+   L   
Sbjct: 558 ----------------------LNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRG 595

Query: 138 E---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           +   + A  +++V  Y+  G+ N A K+ D    K++V W +M++    +G    A   F
Sbjct: 596 KFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIF 655

Query: 195 EAMEER----DVVSWNLML----------DGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
           + M E     D VS+  +L          +G   LD + S +K     P Q   + V  L
Sbjct: 656 KRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKL---QPWQEHYACVVDL 712

Query: 241 SGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEE---AARLFIEMPERNPV 296
            G  R+G+  EA +    MP+    V W A++ A       E    A    +E+   NP 
Sbjct: 713 LG--RSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPG 770

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
           ++  + + +  + K +  + +  +M  + +    A
Sbjct: 771 NYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDPA 805


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 180/485 (37%), Positives = 281/485 (57%), Gaps = 30/485 (6%)

Query: 253 RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWTTMIDGYVRIAK 310
           R +F Q+   N   W A+I  Y  +G   E+  L+  M  +   PVS+T         A 
Sbjct: 93  RLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTF-------TAL 145

Query: 311 LDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC 370
           L      LD    + +  QT +I G+                   D+   N +I  Y +C
Sbjct: 146 LKACSAALDVNLGRQVHTQTILIGGF-----------------GSDLYVGNTLIDMYVKC 188

Query: 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
           G +     +F +M+++D+++W ++I  YA++  M+ A ++F+ +   ++ V+W A+++G+
Sbjct: 189 GCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGL-PMKDMVAWTAMVTGY 247

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY--VN 488
            QN    +AL++F  M   G K D  TL   +SACA L A +    +  +A +SG+   +
Sbjct: 248 AQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTS 307

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           ++ VG++LI MYAKCG +++A  +F+  +  +V S++S+I G+A++G A  A++LF+EM+
Sbjct: 308 NVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEML 367

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
              + P+ VTFIGVL+ACSH G+V+ G +LF  M E + + P  +HYACM+DLL RAGRL
Sbjct: 368 KTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRL 427

Query: 609 DEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMH 668
           +EA  +VK M + P+ G+WG LLGACR+H N  + +IA   L ELEP     Y LLSN++
Sbjct: 428 EEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFELEPNGIGNYILLSNIY 487

Query: 669 AEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQ-IHTFLSGDPKQCRTAEICNTLKTL 727
           A AGRWD+V KVR  M   G +K PGCSW+E K   IH F +GD    ++ EI   L+ L
Sbjct: 488 ASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGIIHEFFAGDMSHPKSREIKQALEDL 547

Query: 728 AAQIR 732
             +++
Sbjct: 548 LDRLK 552



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 182/405 (44%), Gaps = 71/405 (17%)

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM 259
           R +   ++ +D Y  L         FQ++   N   W  ++ GYA  G  +E+  L++ M
Sbjct: 79  RTLTKLDVPMDPYPRL--------VFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSM 130

Query: 260 ------PI----------------------------------RNVVAWNAMIAAYVQRGQ 279
                 P+                                   ++   N +I  YV+ G 
Sbjct: 131 RRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGC 190

Query: 280 IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQN 339
           +    R+F EM +R+ +SWT++I  Y ++  ++ A  L D +P K++ A TAM++GY QN
Sbjct: 191 LGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQN 250

Query: 340 KRMDEANQIFDKIGTHDVVCWNVMIKGY-AQCGRMDEA--INLFRQMVNK-------DIV 389
            R  EA ++F+++    V    V + G  + C ++  A   N  R +  +       ++V
Sbjct: 251 ARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVV 310

Query: 390 TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
             + +I  YA+   ++DA K+FE M + RN  S++++I GF  +     A+++F  M + 
Sbjct: 311 VGSALIDMYAKCGSVEDAYKVFERM-EERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKT 369

Query: 450 GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV---NDLFVGNSLITMYAKCGRI 506
             K +  T    L+AC+H   ++ G+Q+  +  +   V    D +    ++ +  + GR+
Sbjct: 370 EIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYA--CMVDLLGRAGRL 427

Query: 507 QNAELLFK--DADPVDVISWNSLIAGYAINGNA----TEAIKLFE 545
           + A  L K    +P   + W +L+    I+GN       A  LFE
Sbjct: 428 EEALNLVKMMPMNPHGGV-WGALLGACRIHGNPDMAQIAASHLFE 471



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 156/345 (45%), Gaps = 60/345 (17%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL----VSWNSMIAGYLHNDK 92
           +F Q+   N   + ++I  YA  G   ++  L+  M ++ +     ++ +++        
Sbjct: 95  VFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALD 154

Query: 93  VKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMV 147
           V   R++  +      F  DL+    +I  Y + G L     +FD + ++ D   W +++
Sbjct: 155 VNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDR-DVISWTSLI 213

Query: 148 AGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE-------- 199
             YAK+GN   A +L D +P K++V+W +M++GY +N     A + FE M+         
Sbjct: 214 VAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEV 273

Query: 200 ---------------------RD------------VVSWNLMLDGYVELDDLDSAWKFFQ 226
                                RD            VV  + ++D Y +   ++ A+K F+
Sbjct: 274 TLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFE 333

Query: 227 KIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM---PIR-NVVAWNAMIAAYVQRGQIEE 282
           ++ E+NV S+ +M+ G+A +G    A  LFD+M    I+ N V +  ++ A    G +E+
Sbjct: 334 RMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQ 393

Query: 283 AARLFIEMPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQMP 322
             +LF  M E + V+     +  M+D   R  +L+EA  L+  MP
Sbjct: 394 GQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMP 438



 Score =  113 bits (283), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 168/373 (45%), Gaps = 29/373 (7%)

Query: 66  RKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRK 121
           R +F+Q+   N   W ++I GY       E+  L++ M R    P  F++  ++   +  
Sbjct: 93  RLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAA 152

Query: 122 GELEKARELFD----LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSM 177
            ++   R++      +     D    N ++  Y K G      ++ D M  ++++SW S+
Sbjct: 153 LDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSL 212

Query: 178 LSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV---- 233
           +  Y K G M  AS+ F+ +  +D+V+W  M+ GY +      A + F+++    V    
Sbjct: 213 IVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDE 272

Query: 234 VSWVTMLSGYARNGRMLEA---RRLFDQM---PIRNVVAWNAMIAAYVQRGQIEEAARLF 287
           V+ V ++S  A+ G    A   R + +Q    P  NVV  +A+I  Y + G +E+A ++F
Sbjct: 273 VTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVF 332

Query: 288 IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYV----QNKRMD 343
             M ERN  S+++MI G+        A  L D+M    I        G +        ++
Sbjct: 333 ERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVE 392

Query: 344 EANQIFDKI-GTHDVVC----WNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAG 397
           +  Q+F  +   H V      +  M+    + GR++EA+NL + M +N     W  ++ G
Sbjct: 393 QGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALL-G 451

Query: 398 YAQIRQMDDAVKI 410
             +I    D  +I
Sbjct: 452 ACRIHGNPDMAQI 464



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 147/348 (42%), Gaps = 81/348 (23%)

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGF-LQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
           MD   ++  +  +  N   W ALI G+ LQ  F ++++ ++  M ++G      T    L
Sbjct: 88  MDPYPRLVFQQVEYPNPFLWTALIRGYALQGPF-MESVLLYNSMRRQGIGPVSFTFTALL 146

Query: 463 SACAHLAALQLGRQIHHLAIK-SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
            AC+    + LGRQ+H   I   G+ +DL+VGN+LI MY KCG +     +F +    DV
Sbjct: 147 KACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDV 206

Query: 522 ISWNSLI-------------------------------AGYAINGNATEAIKLFEEMVME 550
           ISW SLI                                GYA N    EA+++FE M   
Sbjct: 207 ISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAA 266

Query: 551 GVAPDPVTFIGVLSACSHVGL-------------------------------------VD 573
           GV  D VT +GV+SAC+ +G                                      V+
Sbjct: 267 GVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVE 326

Query: 574 GGLKLFECMTE--VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
              K+FE M E  VY+   ++  +A    +   AG   E F+ +   +IKPN   +  +L
Sbjct: 327 DAYKVFERMEERNVYSYSSMIVGFA----MHGLAGAAMELFDEMLKTEIKPNRVTFIGVL 382

Query: 632 GACRMHQNIKLGR---IAVEKLSELEPQKTSCYALLSNMHAEAGRWDE 676
            AC     ++ G+     +E+   + P +   YA + ++   AGR +E
Sbjct: 383 TACSHAGMVEQGQQLFAMMEECHGVAPSEDH-YACMVDLLGRAGRLEE 429


>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
          Length = 914

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 179/534 (33%), Positives = 296/534 (55%), Gaps = 30/534 (5%)

Query: 208 MLDGYVELDDLDSAWKFFQKI--PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
           ++  Y  L  L S+ + F  I  P  +     TML  YA  G   +A   F  MP R+  
Sbjct: 390 LVSAYALLRLLPSSRRVFDAIRDPHADAFLANTMLRAYALGGAPRDALAAFSAMPRRDSF 449

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWT----TMIDGYVRIAKLDEARRLLDQM 321
            ++ +I A    G +     +   + +   V  T     +ID Y +     +AR++ D+M
Sbjct: 450 TYSFLIKALSAAG-VAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEM 508

Query: 322 PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
           P +++ +    ++  V+   +  A ++FD++   D V WN ++ GY + G ++ A  LF+
Sbjct: 509 PERDVVSWNTAMAAMVREGELAGARKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQ 568

Query: 382 QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALK 441
           +M  +++V+W+TM++GY +   ++ A  IF++M   +N V+W                  
Sbjct: 569 RMPERNVVSWSTMVSGYCKKGDLEMARVIFDKM-PGKNLVTWT----------------- 610

Query: 442 IFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYA 501
             ++M +   + D + +   L+ACA   +L LG++IH    K        V N+LI M+ 
Sbjct: 611 --IMMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFC 668

Query: 502 KCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTF 559
           KCG +  A+ +F D + V  D +SWNS+I G+A++G+  +A++LF +M  +G  PD VT 
Sbjct: 669 KCGCVNRADYVF-DTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTM 727

Query: 560 IGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMK 619
           I VLSAC+H+G VD G + F  M   Y I P +EHY CMIDLL R G + EA +++K M 
Sbjct: 728 INVLSACTHMGFVDEGRRYFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMP 787

Query: 620 IKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEK 679
            +PN  IWG+LL ACR+H+N++   IAV +LS+L+P     YA+LSN++AEAG+W ++ K
Sbjct: 788 WEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAK 847

Query: 680 VRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
            R+ M+G+G+QK  G SW+E+    H F  GD K   + +I   +  L++ +++
Sbjct: 848 ARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQISEMVDRLSSHVKH 901



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 197/388 (50%), Gaps = 20/388 (5%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM--PQRNLVSWNSMIAGYLHNDKV 93
           ++  Q    N      ++SAYA    +  +R++F+ +  P  +    N+M+  Y      
Sbjct: 374 QVLKQGLHLNPRAAARLVSAYALLRLLPSSRRVFDAIRDPHADAFLANTMLRAYALGGAP 433

Query: 94  KEARELFDKMFRPDLFSWALMITCYTRKG--ELEKARELFDLLPNKEDTACWNAMVAGYA 151
           ++A   F  M R D F+++ +I   +  G   +         L + EDT   NA++  Y+
Sbjct: 434 RDALAAFSAMPRRDSFTYSFLIKALSAAGVAPVRAVHSHVVKLGSVEDTFVGNALIDAYS 493

Query: 152 KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
           K G +++A+K+ D MP +++VSWN+ ++   + GE+  A K F+ M E+D VSWN +LDG
Sbjct: 494 KNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGARKLFDEMPEKDTVSWNTILDG 553

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
           Y +  ++++A++ FQ++PE+NVVSW TM+SGY + G +  AR +FD+MP +N+V W  M+
Sbjct: 554 YTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPGKNLVTWTIMM 613

Query: 272 AAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
                   +     +     E   +S    I  YVR   L  +  + +           A
Sbjct: 614 KEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCN-----------A 662

Query: 332 MISGYVQNKRMDEANQIFD-KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNK 386
           +I  + +   ++ A+ +FD +    D V WN +I G+A  G  D+A+ LF QM     N 
Sbjct: 663 LIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNP 722

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           D VT   +++    +  +D+  + F  M
Sbjct: 723 DAVTMINVLSACTHMGFVDEGRRYFSNM 750



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 194/409 (47%), Gaps = 45/409 (11%)

Query: 25  LGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMI 84
           L  S RV +AI+        +    N+M+ AYA  G   DA   F  MP+R+  +++ +I
Sbjct: 400 LPSSRRVFDAIRD----PHADAFLANTMLRAYALGGAPRDALAAFSAMPRRDSFTYSFLI 455

Query: 85  AGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
              L    V   R +   + +     D F    +I  Y++ G    AR++FD +P + D 
Sbjct: 456 KA-LSAAGVAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPER-DV 513

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER 200
             WN  +A   + G    A+KL D MP K+ VSWN++L GYTK GE+  A + F+ M ER
Sbjct: 514 VSWNTAMAAMVREGELAGARKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPER 573

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSW----------------VTMLSGYA 244
           +VVSW+ M+ GY +  DL+ A   F K+P +N+V+W                V++L+  A
Sbjct: 574 NVVSWSTMVSGYCKKGDLEMARVIFDKMPGKNLVTWTIMMKEASVELDVAAVVSILAACA 633

Query: 245 RNGRMLEARRLFDQMPIRNVV----AWNAMIAAYVQRGQIEEAARLF-IEMPERNPVSWT 299
            +G +   +R+   +  RN+       NA+I  + + G +  A  +F  E  +++ VSW 
Sbjct: 634 ESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWN 693

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKN-----------IAAQTAMISGYVQNKRMDEANQI 348
           ++I G+      D+A  L  QM  +            ++A T M  G+V   R   +N  
Sbjct: 694 SIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHM--GFVDEGRRYFSNME 751

Query: 349 FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV-NKDIVTWNTMIA 396
            D      +  +  MI    + G + EA++L + M    + V W ++++
Sbjct: 752 RDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLS 800



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 164/318 (51%), Gaps = 30/318 (9%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            F  N  I    K+G   +A K+F +M +++ V++N+ ++A  + G +  ARKLF++MP+
Sbjct: 482 TFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGARKLFDEMPE 541

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           ++ VSWN+++ GY    +V+ A ELF +M   ++ SW+ M++ Y +KG+LE AR +FD +
Sbjct: 542 KDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKM 601

Query: 135 PNKE---------------DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS----WN 175
           P K                D A   +++A  A+ G+ +  K++   +  +N+       N
Sbjct: 602 PGKNLVTWTIMMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCN 661

Query: 176 SMLSGYTKNGEMHLASKFFEAME-ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ--- 231
           +++  + K G ++ A   F+    ++D VSWN ++ G+      D A + F ++ +Q   
Sbjct: 662 ALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFN 721

Query: 232 -NVVSWVTMLSGYARNGRMLEARRLFDQMP-----IRNVVAWNAMIAAYVQRGQIEEAAR 285
            + V+ + +LS     G + E RR F  M      +  +  +  MI    + G I+EA  
Sbjct: 722 PDAVTMINVLSACTHMGFVDEGRRYFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVD 781

Query: 286 LFIEMP-ERNPVSWTTMI 302
           L   MP E N V W +++
Sbjct: 782 LIKSMPWEPNEVIWGSLL 799


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 190/556 (34%), Positives = 291/556 (52%), Gaps = 50/556 (8%)

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP----IRNVVAWNA 269
             D    A   F  I E N + W TML GYA +   + A +L+  M     + N   +  
Sbjct: 12  HFDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPF 71

Query: 270 MIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           ++ +  +    EE  ++   +     E +    T++I  Y +  +L++A ++ D+  +++
Sbjct: 72  LLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRD 131

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-- 383
           + + TA+I+GY  +  +  A ++FD+I   DVV WN MI GYA+ G   EA+ LF++M  
Sbjct: 132 VVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMK 191

Query: 384 ------------------------VNKDIVTW-------------NTMIAGYAQIRQMDD 406
                                   + + + +W             N +I  Y++  Q++ 
Sbjct: 192 TNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVET 251

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
           A  +FE +  + + VSWN LI G+     + +AL +F  M + G+  +  T+   L ACA
Sbjct: 252 ACGLFEGLSCK-DVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACA 310

Query: 467 HLAALQLGRQIHHLAIKS--GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
           HL A+ +GR IH    K      N   +  SLI MYAKCG I+ A  +F       + SW
Sbjct: 311 HLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSW 370

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           N++I G+A++G A     LF  M   G+ PD +TF+G+LSACSH G +D G  +F+ MT+
Sbjct: 371 NAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQ 430

Query: 585 VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
            Y I P +EHY CMIDLL  +G   EA EM+K M ++P+  IW +LL ACR H N++L  
Sbjct: 431 DYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAE 490

Query: 645 IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQI 704
                L ++EP+    Y LLSN++A AG WDEV KVR  + G G +K PGCS IE+ +++
Sbjct: 491 SFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEV 550

Query: 705 HTFLSGDPKQCRTAEI 720
           H F+ GD    R  EI
Sbjct: 551 HEFIVGDKLHPRNREI 566



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 200/412 (48%), Gaps = 33/412 (8%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL----- 88
           AI +F+ + + N + +N+M+  YA +     A KL+  M    L+  NS    +L     
Sbjct: 19  AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLP-NSYTFPFLLKSCA 77

Query: 89  HNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWN 144
            +   +E +++   +    + PDL+    +I+ Y + G LE A ++FD   ++ D   + 
Sbjct: 78  KSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHR-DVVSYT 136

Query: 145 AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV- 203
           A++ GYA  GN   A+++ D +P K++VSWN+M+SGY + G    A + F+ M + +V  
Sbjct: 137 ALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRP 196

Query: 204 ---SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG----YARNGRMLEARRLF 256
              +   +L    +   ++   +    I +    S + +++     Y++ G++  A  LF
Sbjct: 197 DEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLF 256

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLD 312
           + +  ++VV+WN +I  Y      +EA  LF EM       N V+  +++     +  +D
Sbjct: 257 EGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAID 316

Query: 313 EAR--RLLDQMPYKNI----AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG 366
             R   +      K++    + +T++I  Y +   ++ A+Q+F+ +    +  WN MI G
Sbjct: 317 IGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFG 376

Query: 367 YAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           +A  GR +   +LF +M    +  D +T+  +++  +   ++D    IF+ M
Sbjct: 377 FAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSM 428



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 186/397 (46%), Gaps = 27/397 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           ++     I+   ++GR+E+A K+F + S ++ V+Y ++I+ YA +G +  A+++F+++P 
Sbjct: 101 LYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPV 160

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKAREL 130
           +++VSWN+MI+GY      KEA ELF +M     RPD  +   +++   +   +E  R++
Sbjct: 161 KDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQV 220

Query: 131 FDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
              + +     +    NA++  Y+K G    A  L + +  K++VSWN+++ GYT     
Sbjct: 221 HSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLY 280

Query: 188 HLASKFFEAM----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ-----NVVSWVT 238
             A   F+ M    E  + V+   +L     L  +D        I ++     N  S  T
Sbjct: 281 KEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRT 340

Query: 239 -MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ER 293
            ++  YA+ G +  A ++F+ M  +++ +WNAMI  +   G+      LF  M     E 
Sbjct: 341 SLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEP 400

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMP-----YKNIAAQTAMISGYVQNKRMDEANQI 348
           + +++  ++       KLD  R +   M         +     MI     +    EA ++
Sbjct: 401 DDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEM 460

Query: 349 FDKIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
              +    D V W  ++K   + G ++ A +  R ++
Sbjct: 461 IKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLM 497



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/400 (24%), Positives = 184/400 (46%), Gaps = 31/400 (7%)

Query: 27  KSGRVEEAIKIFSQM----SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNS 82
           KS   EE  +I   +     + +   + S+IS YA+NGR+ DA K+F++   R++VS+ +
Sbjct: 78  KSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTA 137

Query: 83  MIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN---KED 139
           +I GY  +  ++ A+E+FD++   D+ SW  MI+ Y   G  ++A ELF  +     + D
Sbjct: 138 LITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPD 197

Query: 140 TACWNAMVAGYAKIGNYNEAKKLL----DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
                 +++  A+  +    +++     D     N+   N+++  Y+K G++  A   FE
Sbjct: 198 EGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFE 257

Query: 196 AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSGYARNGRMLE 251
            +  +DVVSWN ++ GY  ++    A   FQ++       N V+ V++L   A  G +  
Sbjct: 258 GLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDI 317

Query: 252 AR--RLFDQMPIRNVV----AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGY 305
            R   ++    +++V        ++I  Y + G IE A ++F  M  ++  SW  MI G+
Sbjct: 318 GRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGF 377

Query: 306 VRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIG-----THD 356
               + +    L  +M    I         ++S    + ++D    IF  +      T  
Sbjct: 378 AMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPK 437

Query: 357 VVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMI 395
           +  +  MI      G   EA  + + M +  D V W +++
Sbjct: 438 LEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLL 477



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 144/337 (42%), Gaps = 52/337 (15%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR--- 75
           N  I    K G+VE A  +F  +S K+ V++N++I  Y       +A  LF++M +    
Sbjct: 237 NALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGES 296

Query: 76  -NLVSWNSMIAGYLHNDKVKEAR--------ELFDKMFRPDLFSWALMITCYTRKGELEK 126
            N V+  S++    H   +   R        +L D    P L +   +I  Y + G++E 
Sbjct: 297 PNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRT--SLIDMYAKCGDIEA 354

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYT 182
           A ++F+ + +K  ++ WNAM+ G+A  G  N    L   M    I    +++  +LS  +
Sbjct: 355 AHQVFNSMLHKSLSS-WNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACS 413

Query: 183 KNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG 242
            +G++ L    F++M +                 D D   K            +  M+  
Sbjct: 414 HSGKLDLGRHIFKSMTQ-----------------DYDITPKLEH---------YGCMIDL 447

Query: 243 YARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEA---ARLFIEMPERNPVSW 298
              +G   EA+ +   MP+  + V W +++ A  + G +E A   AR  +++   NP S+
Sbjct: 448 LGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSY 507

Query: 299 TTMIDGYVRIAKLDE---ARRLLDQMPYKNIAAQTAM 332
             + + Y    + DE    R LL+    K +   +++
Sbjct: 508 VLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSI 544


>gi|297799986|ref|XP_002867877.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313713|gb|EFH44136.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 760

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 218/733 (29%), Positives = 363/733 (49%), Gaps = 71/733 (9%)

Query: 45  NTVTY--NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           N+ TY  N ++  Y + G  + ARKLF++M  R++ SWN+ +        ++EA E+FD 
Sbjct: 24  NSDTYLCNRLLDLYIEFGDGDYARKLFDEMSLRDVYSWNAFLTFRCKVGDLEEACEVFDG 83

Query: 103 MFRPDLFSWALMITCYTRKGELEKARELF------DLLPNKED-----TAC--------- 142
           M   D+ SW  MI+   RKG  EKA +++        LP++       +AC         
Sbjct: 84  MPERDVVSWNNMISVLVRKGFEEKALDVYGRMVGDGFLPSRFTLASVLSACSKVQDGVIG 143

Query: 143 ------------------WNAMVAGYAKIG-NYNEAKKLLDAMPSKNIVSWNSMLSGYTK 183
                              NA+++ YAK G   +   ++ +++   N VS+ +++SG  +
Sbjct: 144 MRCHGVAVKTGLDKNIFVGNALLSMYAKCGFMVDYGVRVFESLSEPNEVSFTTVISGLAR 203

Query: 184 NGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV-- 237
             ++  A   F  M E+    D V  + +L   V  +  DS  + +  +  + + S    
Sbjct: 204 ENKVLEAVHMFRLMCEKGVQVDCVCLSNILSISVPREGCDSLSEIYGNVLGKQIHSLALR 263

Query: 238 -----------TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR----GQIEE 282
                      ++L  YA+N  M  A  +F +MP  NVV+WN MIA + Q       IE 
Sbjct: 264 RGFVGELHLNNSLLEIYAKNKDMNGAELIFTEMPEVNVVSWNIMIAGFGQEYRSDKSIEY 323

Query: 283 AARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRM 342
             R+     E N V+  +++    R   ++  RR+ + +P  +++A  AM+SGY   +  
Sbjct: 324 LKRMRDSGFEPNEVTCISILGACFRSGDVETGRRIFNTIPQPSVSAWNAMLSGYSNYEHY 383

Query: 343 DEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINL----FRQMVNKDIVTWNTM 394
           +EA   F ++       D    +V++   A+   ++    +     R   ++D    + +
Sbjct: 384 EEAINNFRQMQFQNLKPDRTTLSVILSSCARLRFLEGGKQIHGVAIRTETSEDSHIVSGL 443

Query: 395 IAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK-KA 453
           IA Y++  +M+    IF++     +   WN++ISG  +N     AL +F  M Q      
Sbjct: 444 IAVYSECEKMEICECIFDDCINELDIACWNSMISGLRRNTLDTKALMLFRRMHQTSVLLP 503

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
           + +T A  L +C+ L +L  GRQ H   +KSGYV+D FV  ++  MY KCG I++A   F
Sbjct: 504 NETTYAIVLGSCSRLCSLVHGRQFHGQVVKSGYVSDSFVETAVTDMYCKCGEIESARQFF 563

Query: 514 KDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVD 573
                 + + WN +I GYA NG   EA+ L+ EM+  G  PD +TF+ VL+ACSH GLVD
Sbjct: 564 DTVSRKNTVIWNEMIHGYAHNGRGDEAVDLYREMISAGEKPDGITFVSVLTACSHSGLVD 623

Query: 574 GGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
            GL++   M   + IEP ++HY C++D L RAGRL++A  + +    K ++ +W  LL +
Sbjct: 624 TGLEILSSMQRDHGIEPELDHYICIVDCLGRAGRLEDAETLAEATPYKSSSVLWEILLSS 683

Query: 634 CRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQP 693
           CR++ ++ L R   EKL  L+PQ ++ Y LLSN ++   +WD+   ++  M  +   K P
Sbjct: 684 CRVYGDVSLARRVAEKLMHLDPQNSAAYVLLSNTYSSVRQWDDAAALQELMNKNRVHKTP 743

Query: 694 GCSWIEVKNQIHT 706
           G SWI   N + +
Sbjct: 744 GHSWITYGNDLDS 756



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 114/460 (24%), Positives = 191/460 (41%), Gaps = 106/460 (23%)

Query: 185 GEMHLASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTM 239
           G  +LAS      +ER     D    N +LD Y+E  D D A K F ++  ++V SW   
Sbjct: 5   GNKYLASLLRCYRDERTGLNSDTYLCNRLLDLYIEFGDGDYARKLFDEMSLRDVYSWNAF 64

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PER 293
           L+   + G + EA  +FD MP R+VV+WN MI+  V++G  E+A  ++  M      P R
Sbjct: 65  LTFRCKVGDLEEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALDVYGRMVGDGFLPSR 124

Query: 294 NPV-----SWTTMIDGYVRIAKLDEARRL-LDQMPYKNIAAQTAMISGYVQNKRM-DEAN 346
             +     + + + DG + +     A +  LD    KNI    A++S Y +   M D   
Sbjct: 125 FTLASVLSACSKVQDGVIGMRCHGVAVKTGLD----KNIFVGNALLSMYAKCGFMVDYGV 180

Query: 347 QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVTW----------- 391
           ++F+ +   + V +  +I G A+  ++ EA+++FR M  K    D V             
Sbjct: 181 RVFESLSEPNEVSFTTVISGLARENKVLEAVHMFRLMCEKGVQVDCVCLSNILSISVPRE 240

Query: 392 ---------------------------------NTMIAGYAQIRQMDDAVKIFEEMGKRR 418
                                            N+++  YA+ + M+ A  IF EM    
Sbjct: 241 GCDSLSEIYGNVLGKQIHSLALRRGFVGELHLNNSLLEIYAKNKDMNGAELIFTEM-PEV 299

Query: 419 NTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIH 478
           N VSWN +I+GF Q      +++    M   G + +  T    L AC     ++ GR+I 
Sbjct: 300 NVVSWNIMIAGFGQEYRSDKSIEYLKRMRDSGFEPNEVTCISILGACFRSGDVETGRRI- 358

Query: 479 HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNAT 538
                                             F       V +WN++++GY+   +  
Sbjct: 359 ----------------------------------FNTIPQPSVSAWNAMLSGYSNYEHYE 384

Query: 539 EAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
           EAI  F +M  + + PD  T   +LS+C+ +  ++GG ++
Sbjct: 385 EAINNFRQMQFQNLKPDRTTLSVILSSCARLRFLEGGKQI 424



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 101/458 (22%), Positives = 183/458 (39%), Gaps = 78/458 (17%)

Query: 17  NQNKKITQLG---KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP 73
           N+   I+ LG   +SG VE   +IF+ + Q +   +N+M+S Y+      +A   F QM 
Sbjct: 335 NEVTCISILGACFRSGDVETGRRIFNTIPQPSVSAWNAMLSGYSNYEHYEEAINNFRQMQ 394

Query: 74  QRNLVSWNSMIAGYLHNDK----VKEARELFDKMFRP----DLFSWALMITCYTRKGELE 125
            +NL    + ++  L +      ++  +++     R     D    + +I  Y+   ++E
Sbjct: 395 FQNLKPDRTTLSVILSSCARLRFLEGGKQIHGVAIRTETSEDSHIVSGLIAVYSECEKME 454

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
               +FD   N+ D ACWN+M++G  +     +A  L   M   +++  N          
Sbjct: 455 ICECIFDDCINELDIACWNSMISGLRRNTLDTKALMLFRRMHQTSVLLPNETTYAIVLGS 514

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVE---------LDDLDSAWKFFQKIPEQNVVSW 236
              L S          VV    + D +VE           +++SA +FF  +  +N V W
Sbjct: 515 CSRLCSLVHGRQFHGQVVKSGYVSDSFVETAVTDMYCKCGEIESARQFFDTVSRKNTVIW 574

Query: 237 VTMLSGYARNGRMLEARRLFDQM----PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE 292
             M+ GYA NGR  EA  L+ +M       + + + +++ A    G ++    +   M  
Sbjct: 575 NEMIHGYAHNGRGDEAVDLYREMISAGEKPDGITFVSVLTACSHSGLVDTGLEILSSMQR 634

Query: 293 RNPVS-----WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347
            + +      +  ++D   R  +L++A  L +  PYK+ +                    
Sbjct: 635 DHGIEPELDHYICIVDCLGRAGRLEDAETLAEATPYKSSS-------------------- 674

Query: 348 IFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD-------IVTWNTMIAGYAQ 400
                     V W +++      G +  A  +  ++++ D       ++  NT    Y+ 
Sbjct: 675 ----------VLWEILLSSCRVYGDVSLARRVAEKLMHLDPQNSAAYVLLSNT----YSS 720

Query: 401 IRQMDDAVKIFEEMGKRR----NTVSW----NALISGF 430
           +RQ DDA  + E M K R       SW    N L SGF
Sbjct: 721 VRQWDDAAALQELMNKNRVHKTPGHSWITYGNDLDSGF 758


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 190/542 (35%), Positives = 288/542 (53%), Gaps = 57/542 (10%)

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN-------- 294
           YA+  R  +ARR+FD+MP R+ VAWNA++A Y + G  E A  + + M E +        
Sbjct: 270 YAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVT 329

Query: 295 -----PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF 349
                P        G  R       R   D+     +   TA++  Y +   +D A ++F
Sbjct: 330 LVSVLPACADAQALGACREVHAFAVRGGFDE----QVNVSTAILDVYCKCGAVDSARKVF 385

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----------------------- 386
           D +   + V WN MIKGYA+ G   EA+ LF++MV +                       
Sbjct: 386 DGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLD 445

Query: 387 ----------------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
                           ++   N +I  Y + ++ D A ++F+E+G +   VSWNA+I G 
Sbjct: 446 EGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYK-TRVSWNAMILGC 504

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
            QN    DA+++F  M  E  K D  TL   + A A ++     R IH  +I+     D+
Sbjct: 505 TQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDV 564

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME 550
           +V  +LI MYAKCGR+  A  LF  A    VI+WN++I GY  +G+   A++LFEEM   
Sbjct: 565 YVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSS 624

Query: 551 GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDE 610
           G  P+  TF+ VLSACSH GLVD G + F  M E Y +EP +EHY  M+DLL RAG+L E
Sbjct: 625 GKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHE 684

Query: 611 AFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAE 670
           A+  ++ M ++P   ++G +LGAC++H+N++L   + +++ ELEP++   + LL+N++A 
Sbjct: 685 AWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYAN 744

Query: 671 AGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQ 730
           A  W +V +VR +ME  G QK PG S +++KN+IHTF SG     +  +I   L  L  +
Sbjct: 745 ASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARLAKLIEE 804

Query: 731 IR 732
           I+
Sbjct: 805 IK 806



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 118/403 (29%), Positives = 187/403 (46%), Gaps = 50/403 (12%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----F 104
            ++ + YAK  R  DAR++F++MP R+ V+WN+++AGY  N   + A  +  +M      
Sbjct: 264 TALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGE 323

Query: 105 RPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKK 161
           RPD  +   ++        L   RE+          E      A++  Y K G  + A+K
Sbjct: 324 RPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARK 383

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM--EERDVVSWNLM--LDGYVELDD 217
           + D M  +N VSWN+M+ GY +NG+   A   F+ M  E  DV   +++  L    EL  
Sbjct: 384 VFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGF 443

Query: 218 LDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
           LD   +  + +     E NV     +++ Y +  R   A ++FD++  +  V+WNAMI  
Sbjct: 444 LDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILG 503

Query: 274 YVQRGQIEEAARLFIEMPERN--PVSWT--TMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
             Q G  E+A RLF  M   N  P S+T  ++I     I+   +AR              
Sbjct: 504 CTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQAR-------------- 549

Query: 330 TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIV 389
              I GY     +D+           DV     +I  YA+CGR+  A +LF    ++ ++
Sbjct: 550 --WIHGYSIRLHLDQ-----------DVYVLTALIDMYAKCGRVSIARSLFNSARDRHVI 596

Query: 390 TWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALISG 429
           TWN MI GY        AV++FEEM   GK  N  ++ +++S 
Sbjct: 597 TWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSA 639



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 122/478 (25%), Positives = 219/478 (45%), Gaps = 73/478 (15%)

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERN---PV--SWTTMIDGYVRIAKLDEARRLLDQMP 322
           +A + A   R  +  A   F  M   +   PV  ++T+++      A L   R +  Q+ 
Sbjct: 193 HARLRAAASRSDLRGALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLA 252

Query: 323 YKNIA----AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
            + ++    A TA+ + Y + +R  +A ++FD++   D V WN ++ GYA+ G  + A+ 
Sbjct: 253 ARGLSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVG 312

Query: 379 LFRQMVNK-----DIVTWNTMIAG-----------------------------------Y 398
           +  +M  +     D VT  +++                                     Y
Sbjct: 313 MVVRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVY 372

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
            +   +D A K+F+ M + RN+VSWNA+I G+ +N    +AL +F  M  EG      ++
Sbjct: 373 CKCGAVDSARKVFDGM-QDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSV 431

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
             AL AC  L  L  GR++H L ++ G  +++ V N+LITMY KC R   A  +F +   
Sbjct: 432 LAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGY 491

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG------LV 572
              +SWN++I G   NG++ +A++LF  M +E V PD  T + ++ A + +        +
Sbjct: 492 KTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWI 551

Query: 573 DGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLG 632
            G         +VY +  L++ YA       + GR+  A  +    + + +   W  ++ 
Sbjct: 552 HGYSIRLHLDQDVYVLTALIDMYA-------KCGRVSIARSLFNSARDR-HVITWNAMIH 603

Query: 633 ACRMHQNIKLGRIAVEKLSELE-----PQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685
               H +   G++AVE   E++     P +T+  ++LS   + AG  DE ++   SM+
Sbjct: 604 GYGSHGS---GKVAVELFEEMKSSGKVPNETTFLSVLSAC-SHAGLVDEGQEYFSSMK 657



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 134/292 (45%), Gaps = 21/292 (7%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR---- 105
            +++  Y K G V+ ARK+F+ M  RN VSWN+MI GY  N    EA  LF +M      
Sbjct: 366 TAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVD 425

Query: 106 -PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKK 161
             D+   A +  C    G L++ R + +LL     + +    NA++  Y K    + A +
Sbjct: 426 VTDVSVLAALHAC-GELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQ 484

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL-----D 216
           + D +  K  VSWN+M+ G T+NG    A + F  M+  +V   +  L   +       D
Sbjct: 485 VFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISD 544

Query: 217 DLDSAWKFFQKIP---EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
            L + W     I    +Q+V     ++  YA+ GR+  AR LF+    R+V+ WNAMI  
Sbjct: 545 PLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHG 604

Query: 274 YVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           Y   G  + A  LF EM       N  ++ +++        +DE +     M
Sbjct: 605 YGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSM 656



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 119/268 (44%), Gaps = 23/268 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  IT   K  R + A ++F ++  K  V++N+MI    +NG   DA +LF +M   N+ 
Sbjct: 467 NALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVK 526

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAREL 130
               +  S+I          +AR +     R     D++    +I  Y + G +  AR L
Sbjct: 527 PDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSL 586

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSMLSGYTKNGE 186
           F+   ++     WNAM+ GY   G+   A +L + M S     N  ++ S+LS  +  G 
Sbjct: 587 FNSARDRH-VITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGL 645

Query: 187 MHLASKFFEAME-----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
           +    ++F +M+     E  +  +  M+D       L  AW F QK+P +  +S    + 
Sbjct: 646 VDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAML 705

Query: 242 GYARNGRMLE-----ARRLFDQMPIRNV 264
           G  +  + +E     A+R+F+  P   V
Sbjct: 706 GACKLHKNVELAEESAQRIFELEPEEGV 733


>gi|347954474|gb|AEP33737.1| chlororespiratory reduction 21 [Nasturtium officinale]
          Length = 826

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 206/717 (28%), Positives = 365/717 (50%), Gaps = 33/717 (4%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
           KN      ++  YAK      +  LF ++  RN+ SW ++I         +EA   F +M
Sbjct: 103 KNEYIETKLVIFYAKCDAFEASEVLFSKLRVRNVYSWAAIIGVKCRIGLCEEALMGFVEM 162

Query: 104 FRPDLFSWALMITCYTRK-GELEKAR-----ELFDLLPNKEDTACWNAMVAG-YAKIGNY 156
            + ++F    ++    +  G L+ +R       + +     D     + +A  Y K G  
Sbjct: 163 LQNEIFPDNFVVPNVCKACGALQWSRFGRGVHGYVVKSGLHDCVFVASSLADMYGKCGVL 222

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGY 212
           ++A+K+ D +P +N+V+WN+++ GY +NG    A +    M +  +    V+ +  L   
Sbjct: 223 DDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRKEGIEPTRVTVSTCLSAS 282

Query: 213 VELDDLDS-----AWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
             +D ++      A      +   N++   + L+ Y + G +  A  +FD+M  ++VV W
Sbjct: 283 ANMDGIEEGKQSHAIAIVNGLELDNILG-TSNLNFYCKVGLIEYAEMIFDRMIEKDVVTW 341

Query: 268 NAMIAAYVQRGQIEEAARLF----IEMPERNPVSWTTMIDGYVRIAKLDEARRL----LD 319
           N +I+ YVQ+G +E+A  +     +E  + + V+ +T++    R   L   + +    + 
Sbjct: 342 NLLISGYVQQGLVEDAIHMCQLMRLENLKYDCVTLSTLMSAAARTQNLKLGKEVQCYCIR 401

Query: 320 QMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
                +I   +  +  Y     + +A ++FD +   D++ WN ++  YA+ G   EA  L
Sbjct: 402 HSFASDIVLASTAVDMYANCGSIIDAKKVFDSVLAKDLILWNTLLSVYAESGLSGEAFRL 461

Query: 380 FRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALISGFLQ 432
           F +M    V  + +TWN +I  + +  Q+++A +IF +M   G   N VSW  +++G +Q
Sbjct: 462 FYEMQLESVPPNAITWNLIILSFLRNGQVNEAKEIFSQMQSSGIFPNLVSWTTMMNGLVQ 521

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG-YVNDLF 491
           N    +A+     M + G + +  ++  ALSAC++LA+L  GR +H   I++  + + + 
Sbjct: 522 NGCSEEAILFLRKMQESGLRPNAFSITVALSACSNLASLHFGRSVHGYIIRNQQHSSSVL 581

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
           +  SL+ MYAKCG I  AE++F+     D+  +N++I+ YA+NGN  EAI L   +   G
Sbjct: 582 IETSLVDMYAKCGDINKAEMVFRSKLCSDLPLYNAMISAYALNGNVKEAIALCRRLEDTG 641

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
           + PD +TF  +LSAC+H G V   +++F  M   + I+P +EHY  M+D+L+ AG  D+A
Sbjct: 642 IKPDNITFTSLLSACNHAGDVSQAVEIFTDMVSKHGIKPCLEHYGLMVDILASAGETDKA 701

Query: 612 FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEA 671
             +++ M  K +A +  +L+ +C M    +L       L E EP+ +  Y  +SN +A  
Sbjct: 702 LRLIEEMPYKSDARMIQSLVASCNMKHKTELMDFLSRHLLETEPENSGNYVTISNAYAVE 761

Query: 672 GRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLA 728
           G WDEV K R  M+    +K PGCSWI +K  +H F++ D    R  EI + L  LA
Sbjct: 762 GSWDEVVKTREMMKAKRLKKSPGCSWIRIKGGVHVFVANDKTHLRNKEIRSILALLA 818



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 139/611 (22%), Positives = 279/611 (45%), Gaps = 65/611 (10%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  +      GK G +++A K+F ++ ++N V +N+++  Y +NG   +A +L   M +
Sbjct: 206 VFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLLSDMRK 265

Query: 75  RNL----VSWNSMIAGYLHNDKVKEARE-----LFDKMFRPDLFSWALMITCYTRKGELE 125
             +    V+ ++ ++   + D ++E ++     + + +   ++   +  +  Y + G +E
Sbjct: 266 EGIEPTRVTVSTCLSASANMDGIEEGKQSHAIAIVNGLELDNILGTS-NLNFYCKVGLIE 324

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGY 181
            A  +FD +  K D   WN +++GY + G   +A  +   M  +N+    V+ ++++S  
Sbjct: 325 YAEMIFDRMIEK-DVVTWNLLISGYVQQGLVEDAIHMCQLMRLENLKYDCVTLSTLMSAA 383

Query: 182 TKNGEMHLASKF----FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV 237
            +   + L  +            D+V  +  +D Y     +  A K F  +  ++++ W 
Sbjct: 384 ARTQNLKLGKEVQCYCIRHSFASDIVLASTAVDMYANCGSIIDAKKVFDSVLAKDLILWN 443

Query: 238 TMLSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           T+LS YA +G   EA RLF +M +     N + WN +I ++++ GQ+ EA  +F +M   
Sbjct: 444 TLLSVYAESGLSGEAFRLFYEMQLESVPPNAITWNLIILSFLRNGQVNEAKEIFSQMQSS 503

Query: 294 ----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMIS---------GYVQNK 340
               N VSWTTM++G V+    +EA   L +M    +      I+           +   
Sbjct: 504 GIFPNLVSWTTMMNGLVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACSNLASLHFG 563

Query: 341 RMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQ 400
           R      I ++  +  V+    ++  YA+CG +++A  +FR  +  D+  +N MI+ YA 
Sbjct: 564 RSVHGYIIRNQQHSSSVLIETSLVDMYAKCGDINKAEMVFRSKLCSDLPLYNAMISAYAL 623

Query: 401 IRQMDDAVKI---FEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV-LMTQEGKKA--D 454
              + +A+ +    E+ G + + +++ +L+S          A++IF  ++++ G K   +
Sbjct: 624 NGNVKEAIALCRRLEDTGIKPDNITFTSLLSACNHAGDVSQAVEIFTDMVSKHGIKPCLE 683

Query: 455 HSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL-- 512
           H  L   + A A      L R I  +  KS    D  +  SL+   A C      EL+  
Sbjct: 684 HYGLMVDILASAGETDKAL-RLIEEMPYKS----DARMIQSLV---ASCNMKHKTELMDF 735

Query: 513 ----FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
                 + +P +  ++ ++   YA+ G+  E +K  E M  + +   P         CS 
Sbjct: 736 LSRHLLETEPENSGNYVTISNAYAVEGSWDEVVKTREMMKAKRLKKSP--------GCSW 787

Query: 569 VGLVDGGLKLF 579
           +  + GG+ +F
Sbjct: 788 IR-IKGGVHVF 797



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 9/145 (6%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDA----RKL 68
           S V  +   +    K G + +A  +F      +   YN+MISAYA NG V +A    R+L
Sbjct: 578 SSVLIETSLVDMYAKCGDINKAEMVFRSKLCSDLPLYNAMISAYALNGNVKEAIALCRRL 637

Query: 69  FEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGE 123
            +   + + +++ S+++   H   V +A E+F  M      +P L  + LM+      GE
Sbjct: 638 EDTGIKPDNITFTSLLSACNHAGDVSQAVEIFTDMVSKHGIKPCLEHYGLMVDILASAGE 697

Query: 124 LEKARELFDLLPNKEDTACWNAMVA 148
            +KA  L + +P K D     ++VA
Sbjct: 698 TDKALRLIEEMPYKSDARMIQSLVA 722



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 2/107 (1%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSG--YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
           L  C +   L  G+QIH   +K+G  Y  + ++   L+  YAKC   + +E+LF      
Sbjct: 75  LQGCVYERDLCTGKQIHARILKNGDFYAKNEYIETKLVIFYAKCDAFEASEVLFSKLRVR 134

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
           +V SW ++I      G   EA+  F EM+   + PD      V  AC
Sbjct: 135 NVYSWAAIIGVKCRIGLCEEALMGFVEMLQNEIFPDNFVVPNVCKAC 181


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 184/540 (34%), Positives = 287/540 (53%), Gaps = 42/540 (7%)

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----- 293
           ++S ++   +M  A  +F+Q+   NV  +N +I A+VQ  Q  +A   F +M +      
Sbjct: 61  LISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFAD 120

Query: 294 -----------NPVSW-----------------------TTMIDGYVRIAKL--DEARRL 317
                      N   W                        ++ID Y +   L  + A +L
Sbjct: 121 NFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKL 180

Query: 318 LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAI 377
             +M  K++ +  +MI G V+   +  A ++FD++   D V WN ++ GY + G M +A 
Sbjct: 181 FMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEMAERDAVSWNTILDGYVKAGEMSQAF 240

Query: 378 NLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHL 437
           NLF +M  +++V+W+TM++GY +   M+ A  +F++M   +N V+W  +ISGF +     
Sbjct: 241 NLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKM-PFKNLVTWTIIISGFAEKGLAK 299

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
           +A  ++  M   G K D  TL   L+ACA    L LG+++H    K      + V N+L+
Sbjct: 300 EATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALV 359

Query: 498 TMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
            MYAKCGR+  A  +F +    D++SWN ++ G A++G+  +AI+LF +M  EG  PD V
Sbjct: 360 DMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKV 419

Query: 558 TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKG 617
           T I +L AC+H G VD GL  F  M   + I P +EHY CMIDLL R GRL+EAF +V+ 
Sbjct: 420 TLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDLLGRGGRLEEAFRLVQS 479

Query: 618 MKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEV 677
           M ++PN  IWGTLLGACR+H  + L    +++L  LE      Y++LSN+ A AG W+ V
Sbjct: 480 MPMEPNDVIWGTLLGACRVHNAVPLAEKVLDRLITLEQSDPGNYSMLSNIFAAAGDWNSV 539

Query: 678 EKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNTPLA 737
             +R+ M+ +G QK  G S IE+ +++H F   D     T +I   L  L   ++    A
Sbjct: 540 ANMRLQMKSTGVQKPSGASSIELDDEVHEFTVFDKSHPETDKIYQILVKLGQDLKQVAYA 599



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/429 (29%), Positives = 215/429 (50%), Gaps = 29/429 (6%)

Query: 20  KKITQLGKSGRVEEAIKIFSQMSQKNT----VTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           +K+  L K        ++ +Q+ ++N          +ISA++   ++N A  +F Q+   
Sbjct: 25  EKLQDLHKCTDFNHIKEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDP 84

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELF 131
           N+  +N++I  ++ N +  +A   F  M +     D F++  ++     KG L   + + 
Sbjct: 85  NVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIH 144

Query: 132 DLLPNKE---DTACWNAMVAGYAKIG--NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
             +       D    N+++  Y+K G    N A KL   M  K++VSWNSM+ G  K G+
Sbjct: 145 CHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGD 204

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARN 246
           +  A K F+ M ERD VSWN +LDGYV+  ++  A+  F+K+PE+NVVSW TM+SGY + 
Sbjct: 205 LGRARKLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKT 264

Query: 247 GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWTTMI-- 302
           G M  AR LFD+MP +N+V W  +I+ + ++G  +EA  L+ +M      P   T +   
Sbjct: 265 GDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISIL 324

Query: 303 -----DGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHD 356
                 G + + K   A   + ++  K ++    A++  Y +  R+D+A  IF+++   D
Sbjct: 325 AACAESGLLVLGKKVHAS--IKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRD 382

Query: 357 VVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFE 412
           +V WN M++G A  G  ++AI LF +M       D VT   ++        +D  +  F 
Sbjct: 383 LVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFN 442

Query: 413 EMGKRRNTV 421
            M +    V
Sbjct: 443 SMERDHGIV 451



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 116/435 (26%), Positives = 210/435 (48%), Gaps = 28/435 (6%)

Query: 20  KKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVS 79
           K I+      ++  A+ +F+Q+   N   YN++I A+ +N +   A   F  M +  L +
Sbjct: 60  KLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFA 119

Query: 80  WNSMIAGYLH--NDK-----VKEARELFDKM-FRPDLFSWALMITCYTRKGEL--EKARE 129
            N      L   N K     V+      +K  F  DLF    +I  Y++ G L    A +
Sbjct: 120 DNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMK 179

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           LF  +  K D   WN+M+ G  K G+   A+KL D M  ++ VSWN++L GY K GEM  
Sbjct: 180 LFMEMGEK-DLVSWNSMIGGLVKAGDLGRARKLFDEMAERDAVSWNTILDGYVKAGEMSQ 238

Query: 190 ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRM 249
           A   FE M ER+VVSW+ M+ GY +  D++ A   F K+P +N+V+W  ++SG+A  G  
Sbjct: 239 AFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLA 298

Query: 250 LEARRLFDQMPIRNVVAWN----AMIAAYVQRGQIEEAARLFIEMPE---RNPVSWT-TM 301
            EA  L++QM    +   +    +++AA  + G +    ++   + +   +  V+ +  +
Sbjct: 299 KEATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNAL 358

Query: 302 IDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH----DV 357
           +D Y +  ++D+A  + ++M  +++ +   M+ G   +   ++A Q+F K+       D 
Sbjct: 359 VDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDK 418

Query: 358 VCWNVMIKGYAQCGRMDEAINLFRQM-----VNKDIVTWNTMIAGYAQIRQMDDAVKIFE 412
           V    ++      G +D+ ++ F  M     +   I  +  MI    +  ++++A ++ +
Sbjct: 419 VTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDLLGRGGRLEEAFRLVQ 478

Query: 413 EMGKRRNTVSWNALI 427
            M    N V W  L+
Sbjct: 479 SMPMEPNDVIWGTLL 493



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 173/328 (52%), Gaps = 22/328 (6%)

Query: 15  VFNQNKKITQLGKSGR--VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           +F  N  I    K G   V  A+K+F +M +K+ V++NSMI    K G +  ARKLF++M
Sbjct: 156 LFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEM 215

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD 132
            +R+ VSWN+++ GY+   ++ +A  LF+KM   ++ SW+ M++ Y + G++E AR LFD
Sbjct: 216 AERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFD 275

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN----SMLSGYTKNGEMH 188
            +P K +   W  +++G+A+ G   EA  L + M +  +   +    S+L+   ++G + 
Sbjct: 276 KMPFK-NLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLLV 334

Query: 189 LASKFFEAMEERDV-----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGY 243
           L  K   ++++  +     VS N ++D Y +   +D A   F ++  +++VSW  ML G 
Sbjct: 335 LGKKVHASIKKIRIKCSVNVS-NALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGL 393

Query: 244 ARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPV--- 296
           A +G   +A +LF +M         V   A++ A    G +++    F  M   + +   
Sbjct: 394 AMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPH 453

Query: 297 --SWTTMIDGYVRIAKLDEARRLLDQMP 322
              +  MID   R  +L+EA RL+  MP
Sbjct: 454 IEHYGCMIDLLGRGGRLEEAFRLVQSMP 481


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 178/493 (36%), Positives = 287/493 (58%), Gaps = 10/493 (2%)

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PV---SWTTMID 303
           +L AR +FD++P  +   WN MI AY+     +E+  LF +M  +   P+   S + +I 
Sbjct: 54  LLYARSVFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQ 113

Query: 304 GYVRIAKLDEARRLLDQMPY----KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
              R+      ++L  Q+       ++  +TA+I  Y +   ++ A  I D++   D+V 
Sbjct: 114 ACGRLKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVP 173

Query: 360 WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRN 419
           +NV++  Y + G ++ A +LF +M  +D+V+WNTMI G+A +  +  A K+F+   +R +
Sbjct: 174 YNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCER-D 232

Query: 420 TVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHH 479
            +SW+++I+ + +     +AL++F  M       D  T+   LSAC  + AL +G+ IH 
Sbjct: 233 LISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHE 292

Query: 480 LAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATE 539
              ++    DL +G SL+ MYAKCG I N+  +F   +  DV +W+++I G A +G    
Sbjct: 293 CIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGEL 352

Query: 540 AIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMI 599
           A+  F +M+ E + P+ VTFIGVLSACSH+GLVD G   F  M++VY + P +EHY C++
Sbjct: 353 ALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVV 412

Query: 600 DLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTS 659
           D+L RAGRL EA E++K M   P+A +W  LLGACR+++N+++   A   L ELEP    
Sbjct: 413 DILGRAGRLQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDG 472

Query: 660 CYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAE 719
            Y LLSN++++A  WD+V  VR  M+    QK PG S IEV N +H F++GD     + +
Sbjct: 473 NYVLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKK 532

Query: 720 ICNTLKTLAAQIR 732
           I   L  + A+++
Sbjct: 533 ILRMLSEITARLK 545



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 194/388 (50%), Gaps = 25/388 (6%)

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP-----DLFSWALMITCYT 119
           AR +F+++P  +   WN+MI  YL++   +E+  LF +M        D +S +L+I    
Sbjct: 57  ARSVFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACG 116

Query: 120 R---KGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNS 176
           R    G  +K       +    D     A++  YAK G+   A+ +LD M   ++V +N 
Sbjct: 117 RLKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNV 176

Query: 177 MLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSW 236
           +L+ Y + GE++LA   F+ M ERD+VSWN M+ G+  L D+ +A K F +  E++++SW
Sbjct: 177 LLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISW 236

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWN-AMIAAYVQRGQIEE--AARLFIEMPER 293
            +M++ YA+  +  EA RLF +M + NV+     M++     G +      ++  E  ER
Sbjct: 237 SSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIER 296

Query: 294 NPVS-----WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQI 348
           N +       T+++D Y +   +D + R+ + M  +++ A +AMI G   +   + A   
Sbjct: 297 NRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDH 356

Query: 349 FDKIGTHDV----VCWNVMIKGYAQCGRMDEAINLFRQM-----VNKDIVTWNTMIAGYA 399
           F K+ + D+    V +  ++   +  G +DE    F  M     V+  I  +  ++    
Sbjct: 357 FSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILG 416

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALI 427
           +  ++ +A+++ + M    + + W AL+
Sbjct: 417 RAGRLQEAMELIKSMPFAPDAIVWRALL 444



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 153/332 (46%), Gaps = 48/332 (14%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS +F +   I    K G +E A  I  +M+  + V YN +++ Y + G +N A  LF++
Sbjct: 137 GSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDR 196

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           MP+R+LVSWN+MI G+     V  A++LFD+    DL SW+ MI  Y +  +  +A  LF
Sbjct: 197 MPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLF 256

Query: 132 ------DLLPNKED-----TACWN---------------------------AMVAGYAKI 153
                 ++LP+K       +AC +                           ++V  YAK 
Sbjct: 257 HEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKC 316

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLML 209
           G+ + + ++ + M ++++ +W++M+ G   +G   LA   F  M   D+    V++  +L
Sbjct: 317 GDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVL 376

Query: 210 DGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPIR-N 263
                +  +D  W +F  + +   VS     +  ++    R GR+ EA  L   MP   +
Sbjct: 377 SACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPD 436

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
            + W A++ A      +E A    + + E  P
Sbjct: 437 AIVWRALLGACRIYKNVEIAEEATVNLLELEP 468


>gi|222622633|gb|EEE56765.1| hypothetical protein OsJ_06312 [Oryza sativa Japonica Group]
          Length = 836

 Score =  337 bits (864), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 224/783 (28%), Positives = 391/783 (49%), Gaps = 83/783 (10%)

Query: 26  GKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLF---------EQMPQRN 76
           G+ G + +A  +F +MS  + V  N +I+A ++ G  ND   LF         E MP   
Sbjct: 5   GRIGSLADAHTVFDEMSCSDAVCRNILITASSRAGLYNDVFHLFRAMLASGVDESMPTAV 64

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKG---ELEKARE 129
            V+    +   L    ++  R +   + +     D  S   +++ Y + G    ++ A  
Sbjct: 65  TVAVVLPVCAKLR--VLRAGRSIHGYVIKTGLEFDTLSGNALVSMYAKCGGSIAMDDAHL 122

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEA----------------KKLLDAMPSKNIVS 173
            F  +  K D   WN+++AGY++ G + EA                  L + +P  ++V 
Sbjct: 123 AFSTICCK-DVVSWNSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPFCSLVE 181

Query: 174 W------------------------NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML 209
           +                        N++++ Y+K  EM      F + +  D+V+WN ++
Sbjct: 182 YGRHYGKEIHGFVVRHGLEMDISVSNALMAHYSKVCEMRAVESIFRSSKMGDIVTWNTVI 241

Query: 210 DGYVELDDLDSAWKFFQKI------PEQNVVSWVTMLSGYARNGRMLEARRLFDQM---P 260
            GYV       A K FQ +      P+   VS +++L+  A+ G +    R+   +   P
Sbjct: 242 AGYVMNRYPSRALKLFQGLLFAGMAPDS--VSLISLLTACAQVGNLRVGIRVHGYIFRHP 299

Query: 261 --IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAK-LDEARRL 317
             ++     NA+++ Y Q  + + A R FI +  ++ VSW  ++         +++  RL
Sbjct: 300 ELLQETSLMNALVSFYSQCDRFDAAFRSFITIQNKDSVSWNAILSACANSEHHIEQFFRL 359

Query: 318 LDQMPYKNIAAQTAMI------SGYVQNKRMDEANQIFDKIG-THDVVCWNVMIKGYAQC 370
           L +M +      +  I      S +   K + E++    ++G T D    N ++  YA+C
Sbjct: 360 LGEMWHDVTQWDSVTILNIIRMSTFCGIKMVQESHGYSLRVGYTGDSSVANAILDAYAKC 419

Query: 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
           G + +A  LFR +  ++IVT NTMI+ Y +   ++DA   F  M ++ +  +WN +   +
Sbjct: 420 GYLHDAETLFRSLAGRNIVTGNTMISCYLKNNCVEDAEMTFNHMAEK-DLTTWNLMSRLY 478

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
            QN+    A  +F  +  EG   D  ++   LSAC HL+++QL +Q H   +++  + D+
Sbjct: 479 AQNDLCDQAFCLFHQLQSEGLNPDTISITNILSACIHLSSVQLVKQCHGYMLRAS-LEDI 537

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME 550
            +  +L+  Y+KCG I NA  LF+ +   D++ + ++I  YA++G A +A++LF +M+  
Sbjct: 538 HLEGALLDAYSKCGNIANAYNLFQVSLHKDLVIFTAMIGAYAMHGMAEKAVELFSKMLTL 597

Query: 551 GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDE 610
            + PD V    +LSACSH GLVD G+K+F+ + E+Y +EP  EH ACM+DLL+R+GRL +
Sbjct: 598 DIKPDHVVLTALLSACSHAGLVDAGIKIFKSIREIYGVEPTEEHCACMVDLLARSGRLQD 657

Query: 611 AFEMVKGMKIK-PNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHA 669
           A+     M     NA  WG+LLGAC++H  +K+G++A ++L  +E +    Y ++SN+ A
Sbjct: 658 AYSFALDMPPHVVNANAWGSLLGACKVHGEVKIGQLAADRLFSMEAEDIGNYVIMSNIFA 717

Query: 670 EAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAA 729
              +W+ VE VR  M+    +K  GCSWIEV+   H F++ D +      I + L +L  
Sbjct: 718 ADDKWESVEHVRKLMKSKDMKKPAGCSWIEVEKTRHLFVASDVQHQDRFSIYDVLGSLYQ 777

Query: 730 QIR 732
           QIR
Sbjct: 778 QIR 780



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 164/393 (41%), Gaps = 73/393 (18%)

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM-----PERNPVS 297
           Y R G + +A  +FD+M   + V  N +I A  + G   +   LF  M      E  P +
Sbjct: 4   YGRIGSLADAHTVFDEMSCSDAVCRNILITASSRAGLYNDVFHLFRAMLASGVDESMPTA 63

Query: 298 WTTM-----------------IDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340
            T                   I GYV    L+      D +    + +  A   G +   
Sbjct: 64  VTVAVVLPVCAKLRVLRAGRSIHGYVIKTGLE-----FDTLSGNALVSMYAKCGGSIA-- 116

Query: 341 RMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK-------------- 386
            MD+A+  F  I   DVV WN +I GY++ G  +EA+ LF QM+++              
Sbjct: 117 -MDDAHLAFSTICCKDVVSWNSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLP 175

Query: 387 --------------------------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
                                     DI   N ++A Y+++ +M     IF    K  + 
Sbjct: 176 FCSLVEYGRHYGKEIHGFVVRHGLEMDISVSNALMAHYSKVCEMRAVESIFRS-SKMGDI 234

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
           V+WN +I+G++ N +   ALK+F  +   G   D  +L   L+ACA +  L++G ++H  
Sbjct: 235 VTWNTVIAGYVMNRYPSRALKLFQGLLFAGMAPDSVSLISLLTACAQVGNLRVGIRVHGY 294

Query: 481 AIKSG-YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATE 539
             +    + +  + N+L++ Y++C R   A   F      D +SWN++++  A + +  E
Sbjct: 295 IFRHPELLQETSLMNALVSFYSQCDRFDAAFRSFITIQNKDSVSWNAILSACANSEHHIE 354

Query: 540 A-IKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
              +L  EM  +    D VT + ++   +  G+
Sbjct: 355 QFFRLLGEMWHDVTQWDSVTILNIIRMSTFCGI 387



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 117/295 (39%), Gaps = 48/295 (16%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G  +   N  I+   K+  VE+A   F+ M++K+  T+N M   YA+N   + A  LF Q
Sbjct: 434 GRNIVTGNTMISCYLKNNCVEDAEMTFNHMAEKDLTTWNLMSRLYAQNDLCDQAFCLFHQ 493

Query: 72  MPQRNL----VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKA 127
           +    L    +S  ++++  +H   V+  ++    M R  L                   
Sbjct: 494 LQSEGLNPDTISITNILSACIHLSSVQLVKQCHGYMLRASL------------------- 534

Query: 128 RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
                     ED     A++  Y+K GN   A  L      K++V + +M+  Y  +G  
Sbjct: 535 ----------EDIHLEGALLDAYSKCGNIANAYNLFQVSLHKDLVIFTAMIGAYAMHGMA 584

Query: 188 HLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVT 238
             A + F  M   D+    V    +L        +D+  K F+ I E   V         
Sbjct: 585 EKAVELFSKMLTLDIKPDHVVLTALLSACSHAGLVDAGIKIFKSIREIYGVEPTEEHCAC 644

Query: 239 MLSGYARNGRMLEARRLFDQMP--IRNVVAWNAMIAAYVQRGQIE----EAARLF 287
           M+   AR+GR+ +A      MP  + N  AW +++ A    G+++     A RLF
Sbjct: 645 MVDLLARSGRLQDAYSFALDMPPHVVNANAWGSLLGACKVHGEVKIGQLAADRLF 699


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 195/549 (35%), Positives = 292/549 (53%), Gaps = 51/549 (9%)

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
           +VV   + +  YA+     +A +LFD+MP R+V +WN +I+ Y Q GQ E+A  LF EM 
Sbjct: 140 DVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMK 199

Query: 292 ----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA----AQTAMISGYVQNKRMD 343
               + + V+ TT+I    R+  L+  + +  ++     A      +A++  Y +   ++
Sbjct: 200 VSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLE 259

Query: 344 EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-------------------- 383
            A ++F++I   +VV WN MI GY+  G     I LFR+M                    
Sbjct: 260 MAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACS 319

Query: 384 -------------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
                              V  DI   +++I  Y +   +  A  +F+ M K  N VSWN
Sbjct: 320 RSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKT-NVVSWN 378

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
            +ISG+++   +L+AL IF  M + G K D  T    L AC+ LA L+ G++IH+  I+S
Sbjct: 379 VMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIES 438

Query: 485 GY-VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
              +N++ +G +L+ MYAKCG +  A  +F      D +SW S+IA Y  +G A EA+KL
Sbjct: 439 KLEINEVVMG-ALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKL 497

Query: 544 FEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLS 603
           FE+M      PD VTF+ +LSACSH GLVD G   F  M   Y  +P VEHY+C+IDLL 
Sbjct: 498 FEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLG 557

Query: 604 RAGRLDEAFEMV-KGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYA 662
           R GRL EA+E++ +   I+ + G+  TL  AC +H+ + LG      L E +P   S Y 
Sbjct: 558 RVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYI 617

Query: 663 LLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICN 722
           +LSNM+A   +WDEV KVR+ ++  G +K PGCSWIEV  +IH F+  D    +   I  
Sbjct: 618 ILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRIHPFVVEDKSHPQADMIYE 677

Query: 723 TLKTLAAQI 731
            +  LA+ +
Sbjct: 678 CMSILASHV 686



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 115/440 (26%), Positives = 206/440 (46%), Gaps = 63/440 (14%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           + V  +S +  YAK     DA KLF++MP+R++ SWN++I+ Y  + + ++A ELF++M 
Sbjct: 140 DVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMK 199

Query: 104 ---FRPDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYN 157
              F+PD  +   +I+   R  +LE+ +E+   L       D    +A+V  Y K G   
Sbjct: 200 VSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLE 259

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----------------- 200
            AK++ + +  KN+VSWNSM++GY+  G+     + F  M+E                  
Sbjct: 260 MAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACS 319

Query: 201 ----------------------DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
                                 D+   + ++D Y +  ++ SA   FQ +P+ NVVSW  
Sbjct: 320 RSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNV 379

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIE---EAARLFIEMP 291
           M+SGY + G  LEA  +F  M    V    + + +++ A  Q   +E   E     IE  
Sbjct: 380 MISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESK 439

Query: 292 -ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD 350
            E N V    ++D Y +   +DEA  + +Q+P ++  + T+MI+ Y  + +  EA ++F+
Sbjct: 440 LEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFE 499

Query: 351 KIGTHDV----VCWNVMIKGYAQCGRMDEAINLFRQMV-----NKDIVTWNTMIAGYAQI 401
           K+   D     V +  ++   +  G +DE    F QM+        +  ++ +I    ++
Sbjct: 500 KMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRV 559

Query: 402 RQMDDAVKIFEEMGKRRNTV 421
            ++ +A +I +     R  V
Sbjct: 560 GRLREAYEILQRTPDIREDV 579



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 176/362 (48%), Gaps = 32/362 (8%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F  +  +   GK G +E A ++F Q+ +KN V++NSMI+ Y+  G      +LF +M + 
Sbjct: 243 FVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEE 302

Query: 76  ----NLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKA 127
                L + +S++     +  ++  + +   + R     D+F  + +I  Y + G +  A
Sbjct: 303 GIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSA 362

Query: 128 RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL----------DAMPSKNIVSWNSM 177
             +F  +P K +   WN M++GY K+G+Y EA  +           DA+   +++   S 
Sbjct: 363 ENVFQNMP-KTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQ 421

Query: 178 LSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV 237
           L+   K  E+H  +   E+  E + V    +LD Y +   +D A   F ++PE++ VSW 
Sbjct: 422 LAVLEKGKEIH--NFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWT 479

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           +M++ Y  +G+  EA +LF++M   +     V + A+++A    G ++E    F +M   
Sbjct: 480 SMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAE 539

Query: 294 ---NPV--SWTTMIDGYVRIAKLDEARRLLDQMP--YKNIAAQTAMISGYVQNKRMDEAN 346
               P    ++ +ID   R+ +L EA  +L + P   +++   + + S    +K++D   
Sbjct: 540 YGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGE 599

Query: 347 QI 348
           QI
Sbjct: 600 QI 601



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 130/252 (51%), Gaps = 5/252 (1%)

Query: 384 VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
           +  +I    ++I  Y        A  +F+ +    +   WN L++   +N   ++ L++F
Sbjct: 34  LQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVF 93

Query: 444 -VLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
             L+     K D  T    L AC+ L  +  G+ +H   IKSG+  D+ V +S + MYAK
Sbjct: 94  HRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAK 153

Query: 503 CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
           C   ++A  LF +    DV SWN++I+ Y  +G   +A++LFEEM + G  PD VT   V
Sbjct: 154 CNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTV 213

Query: 563 LSACSHVGLVDGGLKL-FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIK 621
           +S+C+ +  ++ G ++  E +   +A++  V   + ++D+  + G L+ A E+ + ++ K
Sbjct: 214 ISSCARLLDLERGKEIHMELVRSGFALDGFVS--SALVDMYGKCGCLEMAKEVFEQIQRK 271

Query: 622 PNAGIWGTLLGA 633
            N   W +++  
Sbjct: 272 -NVVSWNSMIAG 282



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 139/320 (43%), Gaps = 44/320 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F  +  I    K G +  A  +F  M + N V++N MIS Y K G   +A  +F  M +
Sbjct: 343 IFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRK 402

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
             +                           +PD  ++  ++   ++   LEK +E+ + +
Sbjct: 403 AGV---------------------------KPDAITFTSVLPACSQLAVLEKGKEIHNFI 435

Query: 135 PNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
              +   +     A++  YAK G  +EA  + + +P ++ VSW SM++ Y  +G+   A 
Sbjct: 436 IESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEAL 495

Query: 192 KFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFF-QKIPEQN----VVSWVTMLSG 242
           K FE M++ D     V++  +L        +D    +F Q I E      V  +  ++  
Sbjct: 496 KLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDL 555

Query: 243 YARNGRMLEARRLFDQMP-IR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVS 297
             R GR+ EA  +  + P IR +V   + + +A     ++   E+  RL IE    +P +
Sbjct: 556 LGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPST 615

Query: 298 WTTMIDGYVRIAKLDEARRL 317
           +  + + Y  + K DE R++
Sbjct: 616 YIILSNMYASVKKWDEVRKV 635



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 2/124 (1%)

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
           D + L   L  C     L+ G+ IH   +  G  N++ +  SLI +Y  C   Q+A+L+F
Sbjct: 2   DTTKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVF 61

Query: 514 KDAD-PVDVISWNSLIAGYAINGNATEAIKLFEEMV-MEGVAPDPVTFIGVLSACSHVGL 571
           +  + P+D+  WN L+A    N    E +++F  ++    + PD  T+  VL ACS +G 
Sbjct: 62  QTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGR 121

Query: 572 VDGG 575
           V  G
Sbjct: 122 VGYG 125


>gi|357478647|ref|XP_003609609.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510664|gb|AES91806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 576

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 189/562 (33%), Positives = 302/562 (53%), Gaps = 54/562 (9%)

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           D+  W  ++  +++ G + EA  L   M    +   +  +S   K+           A  
Sbjct: 68  DSFSWGCVIRFFSQKGQFVEAVSLYVQMRRIGLCPSSHAVSSILKSC----------ARV 117

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
           E D+    L++ G+V     D+            V     +L  Y + G ++ AR++FD+
Sbjct: 118 EDDLC--GLLIHGHVHKFGFDAC-----------VYVQTALLDLYCKIGDVVTARKVFDE 164

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
           MP +NVV+WN++++ Y++ G ++E  R F E+P ++ +SW  M+ GY +  K+D A  L 
Sbjct: 165 MPDKNVVSWNSLLSGYIKGGNLDEGQRFFDEIPLKDVISWNCMVSGYAKAGKMDRACYLF 224

Query: 319 DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
            QMP +N A+   MI+GYV    + EA ++FD +   + V    MI GY++ G +  A  
Sbjct: 225 QQMPERNFASWNTMITGYVDCGSIVEARELFDAMPRRNSVSLITMIAGYSKSGDVHSARE 284

Query: 379 LFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
           LF QM +KD++++N MIA YAQ  +  +A+ +F  M K  +++                 
Sbjct: 285 LFDQMDDKDLLSYNAMIACYAQSSKPKEALDLFNVMLKPDSSL----------------- 327

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
                          D  TLA  +SAC+ L  L+  R I       G V D  +  +LI 
Sbjct: 328 -------------HPDKMTLASVISACSQLGNLEHWRWIESQINNFGIVLDDHLATALID 374

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           +YAKCG I  A  LF      DV++++++I G  ING A++A++LFE M  E + P+ VT
Sbjct: 375 LYAKCGSIDKAYELFHGLRKRDVVAYSAMIYGCGINGRASDAVELFERMAGECIIPNLVT 434

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
           + G+L+A +H GL + G + F  M +   I P V+HY  M+DLL RAG LDEA++++  M
Sbjct: 435 YTGILTAYNHAGLAEEGYRCFISMKD-NGIVPSVDHYGIMVDLLGRAGWLDEAYKLIMKM 493

Query: 619 KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVE 678
            ++PN G+WG LL ACR+H N+KLG IAV+   +LE +    Y+LLS ++A  G+W++ +
Sbjct: 494 PMQPNVGVWGALLLACRLHDNLKLGEIAVQHCIKLESETAGYYSLLSGIYATVGKWNDAK 553

Query: 679 KVRVSMEGSGAQKQPGCSWIEV 700
           K+   +EG    K PGCSW ++
Sbjct: 554 KLTTGVEGKKIIKIPGCSWTQL 575



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/407 (27%), Positives = 212/407 (52%), Gaps = 33/407 (8%)

Query: 35  IKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVK 94
           + I   +   ++ ++  +I  +++ G+  +A  L+ QM +  L   +  ++  L     K
Sbjct: 58  LSILHHLRNPDSFSWGCVIRFFSQKGQFVEAVSLYVQMRRIGLCPSSHAVSSIL-----K 112

Query: 95  EARELFDKM-------------FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTA 141
               + D +             F   ++    ++  Y + G++  AR++FD +P+K +  
Sbjct: 113 SCARVEDDLCGLLIHGHVHKFGFDACVYVQTALLDLYCKIGDVVTARKVFDEMPDK-NVV 171

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
            WN++++GY K GN +E ++  D +P K+++SWN M+SGY K G+M  A   F+ M ER+
Sbjct: 172 SWNSLLSGYIKGGNLDEGQRFFDEIPLKDVISWNCMVSGYAKAGKMDRACYLFQQMPERN 231

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
             SWN M+ GYV+   +  A + F  +P +N VS +TM++GY+++G +  AR LFDQM  
Sbjct: 232 FASWNTMITGYVDCGSIVEARELFDAMPRRNSVSLITMIAGYSKSGDVHSARELFDQMDD 291

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEM--PER----NPVSWTTMIDGYVRIAKLDEAR 315
           ++++++NAMIA Y Q  + +EA  LF  M  P+     + ++  ++I    ++  L+  R
Sbjct: 292 KDLLSYNAMIACYAQSSKPKEALDLFNVMLKPDSSLHPDKMTLASVISACSQLGNLEHWR 351

Query: 316 RLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
            +  Q+    I       TA+I  Y +   +D+A ++F  +   DVV ++ MI G    G
Sbjct: 352 WIESQINNFGIVLDDHLATALIDLYAKCGSIDKAYELFHGLRKRDVVAYSAMIYGCGING 411

Query: 372 RMDEAINLFRQMVNK----DIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           R  +A+ LF +M  +    ++VT+  ++  Y      ++  + F  M
Sbjct: 412 RASDAVELFERMAGECIIPNLVTYTGILTAYNHAGLAEEGYRCFISM 458



 Score =  176 bits (445), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 121/439 (27%), Positives = 216/439 (49%), Gaps = 59/439 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V+ Q   +    K G V  A K+F +M  KN V++NS++S Y K G +++ ++ F+++P 
Sbjct: 139 VYVQTALLDLYCKIGDVVTARKVFDEMPDKNVVSWNSLLSGYIKGGNLDEGQRFFDEIPL 198

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           ++++SWN M++GY    K+  A  LF +M   +  SW  MIT Y   G + +ARELFD +
Sbjct: 199 KDVISWNCMVSGYAKAGKMDRACYLFQQMPERNFASWNTMITGYVDCGSIVEARELFDAM 258

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P + ++     M+AGY+K G+ + A++L D M  K+++S+N+M++ Y ++ +   A   F
Sbjct: 259 P-RRNSVSLITMIAGYSKSGDVHSARELFDQMDDKDLLSYNAMIACYAQSSKPKEALDLF 317

Query: 195 EAMEERD------------VVS----------W-------------------NLMLDGYV 213
             M + D            V+S          W                     ++D Y 
Sbjct: 318 NVMLKPDSSLHPDKMTLASVISACSQLGNLEHWRWIESQINNFGIVLDDHLATALIDLYA 377

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP----IRNVVAWNA 269
           +   +D A++ F  + +++VV++  M+ G   NGR  +A  LF++M     I N+V +  
Sbjct: 378 KCGSIDKAYELFHGLRKRDVVAYSAMIYGCGINGRASDAVELFERMAGECIIPNLVTYTG 437

Query: 270 MIAAYVQRGQIEEAARLFIEMPERNPVS----WTTMIDGYVRIAKLDEARRLLDQMPYK- 324
           ++ AY   G  EE  R FI M +   V     +  M+D   R   LDEA +L+ +MP + 
Sbjct: 438 ILTAYNHAGLAEEGYRCFISMKDNGIVPSVDHYGIMVDLLGRAGWLDEAYKLIMKMPMQP 497

Query: 325 NIAAQTAMISG--YVQNKRMDE-ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
           N+    A++       N ++ E A Q   K+ +     ++++   YA  G+ ++A  L  
Sbjct: 498 NVGVWGALLLACRLHDNLKLGEIAVQHCIKLESETAGYYSLLSGIYATVGKWNDAKKLTT 557

Query: 382 QMVNKDIV-----TWNTMI 395
            +  K I+     +W  ++
Sbjct: 558 GVEGKKIIKIPGCSWTQLV 576


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 195/549 (35%), Positives = 292/549 (53%), Gaps = 51/549 (9%)

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
           +VV   + +  YA+     +A +LFD+MP R+V +WN +I+ Y Q GQ E+A  LF EM 
Sbjct: 332 DVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMK 391

Query: 292 ----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA----AQTAMISGYVQNKRMD 343
               + + V+ TT+I    R+  L+  + +  ++     A      +A++  Y +   ++
Sbjct: 392 VSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLE 451

Query: 344 EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-------------------- 383
            A ++F++I   +VV WN MI GY+  G     I LFR+M                    
Sbjct: 452 MAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACS 511

Query: 384 -------------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
                              V  DI   +++I  Y +   +  A  +F+ M K  N VSWN
Sbjct: 512 RSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKT-NVVSWN 570

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
            +ISG+++   +L+AL IF  M + G K D  T    L AC+ LA L+ G++IH+  I+S
Sbjct: 571 VMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIES 630

Query: 485 GY-VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
              +N++ +G +L+ MYAKCG +  A  +F      D +SW S+IA Y  +G A EA+KL
Sbjct: 631 KLEINEVVMG-ALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKL 689

Query: 544 FEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLS 603
           FE+M      PD VTF+ +LSACSH GLVD G   F  M   Y  +P VEHY+C+IDLL 
Sbjct: 690 FEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLG 749

Query: 604 RAGRLDEAFEMV-KGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYA 662
           R GRL EA+E++ +   I+ + G+  TL  AC +H+ + LG      L E +P   S Y 
Sbjct: 750 RVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYI 809

Query: 663 LLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICN 722
           +LSNM+A   +WDEV KVR+ ++  G +K PGCSWIEV  +IH F+  D    +   I  
Sbjct: 810 ILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRIHPFVVEDKSHPQADMIYE 869

Query: 723 TLKTLAAQI 731
            +  LA+ +
Sbjct: 870 CMSILASHV 878



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/440 (26%), Positives = 206/440 (46%), Gaps = 63/440 (14%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           + V  +S +  YAK     DA KLF++MP+R++ SWN++I+ Y  + + ++A ELF++M 
Sbjct: 332 DVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMK 391

Query: 104 ---FRPDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYN 157
              F+PD  +   +I+   R  +LE+ +E+   L       D    +A+V  Y K G   
Sbjct: 392 VSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLE 451

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----------------- 200
            AK++ + +  KN+VSWNSM++GY+  G+     + F  M+E                  
Sbjct: 452 MAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACS 511

Query: 201 ----------------------DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
                                 D+   + ++D Y +  ++ SA   FQ +P+ NVVSW  
Sbjct: 512 RSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNV 571

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIE---EAARLFIEMP 291
           M+SGY + G  LEA  +F  M    V    + + +++ A  Q   +E   E     IE  
Sbjct: 572 MISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESK 631

Query: 292 -ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD 350
            E N V    ++D Y +   +DEA  + +Q+P ++  + T+MI+ Y  + +  EA ++F+
Sbjct: 632 LEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFE 691

Query: 351 KIGTHDV----VCWNVMIKGYAQCGRMDEAINLFRQMV-----NKDIVTWNTMIAGYAQI 401
           K+   D     V +  ++   +  G +DE    F QM+        +  ++ +I    ++
Sbjct: 692 KMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRV 751

Query: 402 RQMDDAVKIFEEMGKRRNTV 421
            ++ +A +I +     R  V
Sbjct: 752 GRLREAYEILQRTPDIREDV 771



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 176/362 (48%), Gaps = 32/362 (8%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F  +  +   GK G +E A ++F Q+ +KN V++NSMI+ Y+  G      +LF +M + 
Sbjct: 435 FVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEE 494

Query: 76  ----NLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKA 127
                L + +S++     +  ++  + +   + R     D+F  + +I  Y + G +  A
Sbjct: 495 GIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSA 554

Query: 128 RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL----------DAMPSKNIVSWNSM 177
             +F  +P K +   WN M++GY K+G+Y EA  +           DA+   +++   S 
Sbjct: 555 ENVFQNMP-KTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQ 613

Query: 178 LSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV 237
           L+   K  E+H  +   E+  E + V    +LD Y +   +D A   F ++PE++ VSW 
Sbjct: 614 LAVLEKGKEIH--NFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWT 671

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           +M++ Y  +G+  EA +LF++M   +     V + A+++A    G ++E    F +M   
Sbjct: 672 SMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAE 731

Query: 294 ---NPV--SWTTMIDGYVRIAKLDEARRLLDQMP--YKNIAAQTAMISGYVQNKRMDEAN 346
               P    ++ +ID   R+ +L EA  +L + P   +++   + + S    +K++D   
Sbjct: 732 YGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGE 791

Query: 347 QI 348
           QI
Sbjct: 792 QI 793



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 130/252 (51%), Gaps = 5/252 (1%)

Query: 384 VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
           +  +I    ++I  Y        A  +F+ +    +   WN L++   +N   ++ L++F
Sbjct: 226 LQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVF 285

Query: 444 -VLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
             L+     K D  T    L AC+ L  +  G+ +H   IKSG+  D+ V +S + MYAK
Sbjct: 286 HRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAK 345

Query: 503 CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
           C   ++A  LF +    DV SWN++I+ Y  +G   +A++LFEEM + G  PD VT   V
Sbjct: 346 CNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTV 405

Query: 563 LSACSHVGLVDGGLKL-FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIK 621
           +S+C+ +  ++ G ++  E +   +A++  V   + ++D+  + G L+ A E+ + ++ K
Sbjct: 406 ISSCARLLDLERGKEIHMELVRSGFALDGFVS--SALVDMYGKCGCLEMAKEVFEQIQRK 463

Query: 622 PNAGIWGTLLGA 633
            N   W +++  
Sbjct: 464 -NVVSWNSMIAG 474



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 139/320 (43%), Gaps = 44/320 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F  +  I    K G +  A  +F  M + N V++N MIS Y K G   +A  +F  M +
Sbjct: 535 IFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRK 594

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
             +                           +PD  ++  ++   ++   LEK +E+ + +
Sbjct: 595 AGV---------------------------KPDAITFTSVLPACSQLAVLEKGKEIHNFI 627

Query: 135 PNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
              +   +     A++  YAK G  +EA  + + +P ++ VSW SM++ Y  +G+   A 
Sbjct: 628 IESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEAL 687

Query: 192 KFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFF-QKIPEQN----VVSWVTMLSG 242
           K FE M++ D     V++  +L        +D    +F Q I E      V  +  ++  
Sbjct: 688 KLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDL 747

Query: 243 YARNGRMLEARRLFDQMP-IR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVS 297
             R GR+ EA  +  + P IR +V   + + +A     ++   E+  RL IE    +P +
Sbjct: 748 LGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPST 807

Query: 298 WTTMIDGYVRIAKLDEARRL 317
           +  + + Y  + K DE R++
Sbjct: 808 YIILSNMYASVKKWDEVRKV 827



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)

Query: 473 LGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD-PVDVISWNSLIAGY 531
           LG+ IH   +  G  N++ +  SLI +Y  C   Q+A+L+F+  + P+D+  WN L+A  
Sbjct: 213 LGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAAC 272

Query: 532 AINGNATEAIKLFEEMV-MEGVAPDPVTFIGVLSACSHVGLVDGG 575
             N    E +++F  ++    + PD  T+  VL ACS +G V  G
Sbjct: 273 TKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYG 317


>gi|302819249|ref|XP_002991295.1| hypothetical protein SELMODRAFT_31382 [Selaginella moellendorffii]
 gi|300140875|gb|EFJ07593.1| hypothetical protein SELMODRAFT_31382 [Selaginella moellendorffii]
          Length = 581

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 202/608 (33%), Positives = 316/608 (51%), Gaps = 50/608 (8%)

Query: 81  NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
           N+++  Y     V EAR +FD + + + FSW ++ T Y   G L++A+ + D +P +   
Sbjct: 1   NTLMHSYGRCGCVDEARRVFDAIPQRNPFSWNILATAYIHNGFLQEAKGVLDRMP-QPSA 59

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF---FEAM 197
             WN M+A Y++ G   EA+ + D+MP  N ++WNS+LSGY   G  H  ++    F+ M
Sbjct: 60  VSWNLMLAAYSREGLTAEARAMFDSMPELNSIAWNSILSGYAHTG--HCVTEVLTVFQRM 117

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFD 257
              DV+SWN +L    E  D     + F  + ++ +VSW   +   AR G +  AR +FD
Sbjct: 118 PGHDVISWNTLLLAISETGDAGGTKRVFDGMAQRTLVSWTCAMQANARTGNVAAARDVFD 177

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL 317
           +MP+R+VVAW AM+ AY Q   ++    LF  MP+R+  SW+ +I  Y       +A+  
Sbjct: 178 KMPLRDVVAWTAMLQAYAQ--DLDSLEALFRVMPQRDAASWSLVISAYGEGGDAWKAKHT 235

Query: 318 LDQMP--YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
            D MP   +N++   A+   Y+ N ++ EA  +  ++   DVV WN M+    Q G ++ 
Sbjct: 236 FDAMPGSSRNLSCWNALCHAYLYNGQLAEAGGVLHRMSKRDVVAWNGMLSCCVQRGEVET 295

Query: 376 AINLFRQ-MVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM-GKRRNTVSWNALISGF-LQ 432
           A  L R  +  +  V+W+T++ GYAQ R++DDA +IF  +    R+ VSW AL     L 
Sbjct: 296 AEALLRDTLPERSPVSWSTVVCGYAQSRKLDDAREIFHRLPASERDVVSWTALFHACALN 355

Query: 433 NEFHLDALKIFVLMTQEGKKA-----------DHSTLACAL---SACAHLAALQLGRQIH 478
           N     AL  F  M  +   +            H+  A A+     C  + AL L   I 
Sbjct: 356 NCLDEAALVFFRDMPDKNHVSWNAMAAAYARAGHTAEAKAVLEQMPCHDVVALTL---IF 412

Query: 479 HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP-VDVISWNSLIAGYAINGNA 537
           HLA++SG                   R+++A  LF +  P  D+++WN++I  YA NG  
Sbjct: 413 HLAVQSG-------------------RLEHARSLFDNVVPEKDLVAWNAMIGAYAQNGQG 453

Query: 538 TEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYAC 597
            EA+ L+ EM ++G+ PD VT   +L+A S +G V+ G   F  M   + I P  EHYAC
Sbjct: 454 DEALLLYREMHIQGMDPDDVTMSSILAAHSRLGQVEQGRSHFVAMPMDHGITPSEEHYAC 513

Query: 598 MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK 657
           M+D L R+G+L  A E++      P+   WG+ L  CR++Q++  G  A +  + L+P K
Sbjct: 514 MVDALGRSGQLVAAEELLATFPFHPSYVAWGSFLAGCRINQDVARGERAAQIAAVLDPSK 573

Query: 658 TSCYALLS 665
            + Y LLS
Sbjct: 574 CAPYVLLS 581



 Score =  251 bits (642), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 159/557 (28%), Positives = 273/557 (49%), Gaps = 45/557 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +   G+ G V+EA ++F  + Q+N  ++N + +AY  NG + +A+ + ++MPQ + V
Sbjct: 1   NTLMHSYGRCGCVDEARRVFDAIPQRNPFSWNILATAYIHNGFLQEAKGVLDRMPQPSAV 60

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGE-LEKARELFDLLPNK 137
           SWN M+A Y       EAR +FD M   +  +W  +++ Y   G  + +   +F  +P  
Sbjct: 61  SWNLMLAAYSREGLTAEARAMFDSMPELNSIAWNSILSGYAHTGHCVTEVLTVFQRMPG- 119

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            D   WN ++   ++ G+    K++ D M  + +VSW   +    + G +  A   F+ M
Sbjct: 120 HDVISWNTLLLAISETGDAGGTKRVFDGMAQRTLVSWTCAMQANARTGNVAAARDVFDKM 179

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFD 257
             RDVV+W  ML  Y +  DLDS    F+ +P+++  SW  ++S Y   G   +A+  FD
Sbjct: 180 PLRDVVAWTAMLQAYAQ--DLDSLEALFRVMPQRDAASWSLVISAYGEGGDAWKAKHTFD 237

Query: 258 QMP---------------------------------IRNVVAWNAMIAAYVQRGQIEEAA 284
            MP                                  R+VVAWN M++  VQRG++E A 
Sbjct: 238 AMPGSSRNLSCWNALCHAYLYNGQLAEAGGVLHRMSKRDVVAWNGMLSCCVQRGEVETAE 297

Query: 285 RLFIE-MPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY--KNIAAQTAMISGYVQNKR 341
            L  + +PER+PVSW+T++ GY +  KLD+AR +  ++P   +++ + TA+      N  
Sbjct: 298 ALLRDTLPERSPVSWSTVVCGYAQSRKLDDAREIFHRLPASERDVVSWTALFHACALNNC 357

Query: 342 MDEANQIFDK-IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQ 400
           +DEA  +F + +   + V WN M   YA+ G   EA  +  QM   D+V    +     Q
Sbjct: 358 LDEAALVFFRDMPDKNHVSWNAMAAAYARAGHTAEAKAVLEQMPCHDVVALTLIFHLAVQ 417

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
             +++ A  +F+ +   ++ V+WNA+I  + QN    +AL ++  M  +G   D  T++ 
Sbjct: 418 SGRLEHARSLFDNVVPEKDLVAWNAMIGAYAQNGQGDEALLLYREMHIQGMDPDDVTMSS 477

Query: 461 ALSACAHLAALQLGRQIHHLAIK--SGYVNDLFVGNSLITMYAKCGRIQNA-ELLFKDAD 517
            L+A + L  ++ GR  H +A+    G          ++    + G++  A ELL     
Sbjct: 478 ILAAHSRLGQVEQGRS-HFVAMPMDHGITPSEEHYACMVDALGRSGQLVAAEELLATFPF 536

Query: 518 PVDVISWNSLIAGYAIN 534
               ++W S +AG  IN
Sbjct: 537 HPSYVAWGSFLAGCRIN 553



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 129/439 (29%), Positives = 226/439 (51%), Gaps = 17/439 (3%)

Query: 11  KGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFE 70
            G  V + N  +  + ++G      ++F  M+Q+  V++   + A A+ G V  AR +F+
Sbjct: 118 PGHDVISWNTLLLAISETGDAGGTKRVFDGMAQRTLVSWTCAMQANARTGNVAAARDVFD 177

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
           +MP R++V+W +M+  Y  +    EA  LF  M + D  SW+L+I+ Y   G+  KA+  
Sbjct: 178 KMPLRDVVAWTAMLQAYAQDLDSLEA--LFRVMPQRDAASWSLVISAYGEGGDAWKAKHT 235

Query: 131 FDLLP-NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           FD +P +  + +CWNA+   Y   G   EA  +L  M  +++V+WN MLS   + GE+  
Sbjct: 236 FDAMPGSSRNLSCWNALCHAYLYNGQLAEAGGVLHRMSKRDVVAWNGMLSCCVQRGEVET 295

Query: 190 ASKFF-EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP--EQNVVSWVTMLSGYARN 246
           A     + + ER  VSW+ ++ GY +   LD A + F ++P  E++VVSW  +    A N
Sbjct: 296 AEALLRDTLPERSPVSWSTVVCGYAQSRKLDDAREIFHRLPASERDVVSWTALFHACALN 355

Query: 247 GRMLEARRL-FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGY 305
             + EA  + F  MP +N V+WNAM AAY + G   EA  +  +MP  + V+ T +    
Sbjct: 356 NCLDEAALVFFRDMPDKNHVSWNAMAAAYARAGHTAEAKAVLEQMPCHDVVALTLIFHLA 415

Query: 306 VRIAKLDEARRLLDQ-MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH----DVVCW 360
           V+  +L+ AR L D  +P K++ A  AMI  Y QN + DEA  ++ ++       D V  
Sbjct: 416 VQSGRLEHARSLFDNVVPEKDLVAWNAMIGAYAQNGQGDEALLLYREMHIQGMDPDDVTM 475

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVT-----WNTMIAGYAQIRQMDDAVKIFEEMG 415
           + ++  +++ G++++  + F  M     +T     +  M+    +  Q+  A ++     
Sbjct: 476 SSILAAHSRLGQVEQGRSHFVAMPMDHGITPSEEHYACMVDALGRSGQLVAAEELLATFP 535

Query: 416 KRRNTVSWNALISGFLQNE 434
              + V+W + ++G   N+
Sbjct: 536 FHPSYVAWGSFLAGCRINQ 554


>gi|125589995|gb|EAZ30345.1| hypothetical protein OsJ_14392 [Oryza sativa Japonica Group]
          Length = 704

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 182/568 (32%), Positives = 315/568 (55%), Gaps = 13/568 (2%)

Query: 176 SMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-EQNVV 234
           S+L  Y+   ++  A   F+ +   + + W+ M+   V  + L  A    Q++P  +++ 
Sbjct: 107 SLLDFYSSCLDLDAARTLFDTLHANNELLWSPMVVALVRFNLLSDALDLLQRMPPSRDLF 166

Query: 235 SWVTMLSGYAR--NGRMLEARRLFDQM-----PIRNVVAWNAMIAAYVQRGQIEEAAR-- 285
           +W  ++SGYAR  N    ++  LF Q+      + N   +++++ A V+ G +E      
Sbjct: 167 AWTAIISGYARGANEYCCKSLELFVQLLAEDGVMPNEFTYDSVLRACVKMGALEFGRSIH 226

Query: 286 --LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMD 343
             L     E   +  + ++D Y R   +D+A  + + +   ++     +I+G++   R +
Sbjct: 227 GCLIQSGFESEQLITSALVDLYCRSGAVDDAVMVYNGLQMPSLITSNTLIAGFISMGRTE 286

Query: 344 EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQ 403
           +A  +F ++  HD   +N+MIK YA  GR+++   +F  M  +++VT N+M++   Q  +
Sbjct: 287 DAKLVFSQMTEHDSGSYNLMIKAYADEGRLEDCRRMFEMMPRRNMVTLNSMMSVLLQNGK 346

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS 463
           +++  K+FE++   RNTV+WN++ISG++QN+   +ALK+F +M +   +   ST    L 
Sbjct: 347 LEEGRKLFEQIKDERNTVTWNSMISGYVQNDQSSEALKLFAVMCRLSIECSASTFPALLH 406

Query: 464 ACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
           ACA +  ++ G+ +H L  K+ + ++ +VG +L+ MY+KCG + +A   F      +V S
Sbjct: 407 ACATIGTIEQGKMVHALLCKTPFESNGYVGTALVDMYSKCGCVSDARAAFSCIMSPNVAS 466

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMT 583
           W SLI G A NG+  EAI  F  M+   V P+ +TF+G+L A +  GLV+ G++ F  M 
Sbjct: 467 WTSLINGLAQNGHWMEAIVQFARMLKNNVKPNEITFLGILMASARAGLVNKGMRFFHSM- 525

Query: 584 EVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLG 643
           E Y + P VEHY C +DLL RA R+ EA + +  M I  +  +WG LL AC    ++++G
Sbjct: 526 ESYGVVPTVEHYTCAVDLLGRARRVREAEKFISKMPIPADGVVWGALLTACWYTMDLEMG 585

Query: 644 RIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQ 703
               EKL  +  +  S Y  +SN++A+ G+W++V KVR  +    A+K+PGCSWIEVK+ 
Sbjct: 586 EKVAEKLFYMGTKHISAYVAMSNIYAKLGKWEDVVKVRTRLRSINAKKEPGCSWIEVKDM 645

Query: 704 IHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           +H FL  D       EI   L+ L + I
Sbjct: 646 VHVFLVEDRNHPEREEIYLMLEDLVSNI 673



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 206/408 (50%), Gaps = 24/408 (5%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM-PQRNLVSWNSMIAGYLH 89
           ++ A  +F  +   N + ++ M+ A  +   ++DA  L ++M P R+L +W ++I+GY  
Sbjct: 118 LDAARTLFDTLHANNELLWSPMVVALVRFNLLSDALDLLQRMPPSRDLFAWTAIISGYAR 177

Query: 90  --NDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARELFDLLPN---KED 139
             N+   ++ ELF ++       P+ F++  ++    + G LE  R +   L     + +
Sbjct: 178 GANEYCCKSLELFVQLLAEDGVMPNEFTYDSVLRACVKMGALEFGRSIHGCLIQSGFESE 237

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE 199
               +A+V  Y + G  ++A  + + +   ++++ N++++G+   G    A   F  M E
Sbjct: 238 QLITSALVDLYCRSGAVDDAVMVYNGLQMPSLITSNTLIAGFISMGRTEDAKLVFSQMTE 297

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM 259
            D  S+NLM+  Y +   L+   + F+ +P +N+V+  +M+S   +NG++ E R+LF+Q+
Sbjct: 298 HDSGSYNLMIKAYADEGRLEDCRRMFEMMPRRNMVTLNSMMSVLLQNGKLEEGRKLFEQI 357

Query: 260 PI-RNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEA 314
              RN V WN+MI+ YVQ  Q  EA +LF  M     E +  ++  ++     I  +++ 
Sbjct: 358 KDERNTVTWNSMISGYVQNDQSSEALKLFAVMCRLSIECSASTFPALLHACATIGTIEQG 417

Query: 315 R---RLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC 370
           +    LL + P++ N    TA++  Y +   + +A   F  I + +V  W  +I G AQ 
Sbjct: 418 KMVHALLCKTPFESNGYVGTALVDMYSKCGCVSDARAAFSCIMSPNVASWTSLINGLAQN 477

Query: 371 GRMDEAINLFRQMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEM 414
           G   EAI  F +M+  ++    +T+  ++   A+   ++  ++ F  M
Sbjct: 478 GHWMEAIVQFARMLKNNVKPNEITFLGILMASARAGLVNKGMRFFHSM 525



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 181/375 (48%), Gaps = 24/375 (6%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           +SG V++A+ +++ +   + +T N++I+ +   GR  DA+ +F QM + +  S+N MI  
Sbjct: 250 RSGAVDDAVMVYNGLQMPSLITSNTLIAGFISMGRTEDAKLVFSQMTEHDSGSYNLMIKA 309

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
           Y    ++++ R +F+ M R ++ +   M++   + G+LE+ R+LF+ + ++ +T  WN+M
Sbjct: 310 YADEGRLEDCRRMFEMMPRRNMVTLNSMMSVLLQNGKLEEGRKLFEQIKDERNTVTWNSM 369

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLS---------GYTKNGEMHLASKFFEAM 197
           ++GY +    +EA KL   M   +I    S            G  + G+M  A       
Sbjct: 370 ISGYVQNDQSSEALKLFAVMCRLSIECSASTFPALLHACATIGTIEQGKMVHALLCKTPF 429

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFD 257
           E    V    ++D Y +   +  A   F  I   NV SW ++++G A+NG  +EA   F 
Sbjct: 430 ESNGYVG-TALVDMYSKCGCVSDARAAFSCIMSPNVASWTSLINGLAQNGHWMEAIVQFA 488

Query: 258 QMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS----WTTMIDGYVRIA 309
           +M   NV    + +  ++ A  + G + +  R F  M     V     +T  +D   R  
Sbjct: 489 RMLKNNVKPNEITFLGILMASARAGLVNKGMRFFHSMESYGVVPTVEHYTCAVDLLGRAR 548

Query: 310 KLDEARRLLDQMPYK-NIAAQTAMISG--YVQNKRMDE--ANQIFDKIGTHDVVCWNVMI 364
           ++ EA + + +MP   +     A+++   Y  +  M E  A ++F  +GT  +  +  M 
Sbjct: 549 RVREAEKFISKMPIPADGVVWGALLTACWYTMDLEMGEKVAEKLF-YMGTKHISAYVAMS 607

Query: 365 KGYAQCGRMDEAINL 379
             YA+ G+ ++ + +
Sbjct: 608 NIYAKLGKWEDVVKV 622



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 139/298 (46%), Gaps = 46/298 (15%)

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
           +SWNA ++   +     DAL     M +     D +T A AL ACA    L++G Q+H  
Sbjct: 33  LSWNATVAAHARRGRVRDALGTAARMHRSAAGLDEATYASALGACARGRCLRMGWQVHCQ 92

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD----------------------ADP 518
            +KSG  +   VG SL+  Y+ C  +  A  LF                        +D 
Sbjct: 93  VVKSGSDDFPVVGASLLDFYSSCLDLDAARTLFDTLHANNELLWSPMVVALVRFNLLSDA 152

Query: 519 VDVI----------SWNSLIAGYAINGN--ATEAIKLFEEMVME-GVAPDPVTFIGVLSA 565
           +D++          +W ++I+GYA   N    ++++LF +++ E GV P+  T+  VL A
Sbjct: 153 LDLLQRMPPSRDLFAWTAIISGYARGANEYCCKSLELFVQLLAEDGVMPNEFTYDSVLRA 212

Query: 566 CSHVGLVDGGLKLFECMTEV-YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNA 624
           C  +G ++ G  +  C+ +  +  E L+   + ++DL  R+G +D+A  +  G+++ P+ 
Sbjct: 213 CVKMGALEFGRSIHGCLIQSGFESEQLIT--SALVDLYCRSGAVDDAVMVYNGLQM-PSL 269

Query: 625 GIWGTLLGACRMHQNIKLGRIAVEKL--SELEPQKTSCYALLSNMHAEAGRWDEVEKV 680
               TL+        I +GR    KL  S++    +  Y L+   +A+ GR ++  ++
Sbjct: 270 ITSNTLIAG-----FISMGRTEDAKLVFSQMTEHDSGSYNLMIKAYADEGRLEDCRRM 322


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 247/849 (29%), Positives = 383/849 (45%), Gaps = 164/849 (19%)

Query: 36   KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP--QRNLVSWNSMIAGYLHNDKV 93
            +I +     +    N++I+ Y+K G ++ ARKLF+  P   R+LV+WN++++   H DK 
Sbjct: 651  RILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSA--HADKA 708

Query: 94   KEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTAC---------WN 144
            ++   LF ++ R    S          K  L  A       P+  ++           W+
Sbjct: 709  RDGFHLF-RLLRRSFVSATRHTLAPVFKMCLLSAS------PSAAESLHGYAVKIGLQWD 761

Query: 145  AMVAG-----YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE 199
              VAG     YAK G   EA+ L D M  +++V WN M+  Y   G  + A   F     
Sbjct: 762  VFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNR 821

Query: 200  -----------------------------------------------RDVVSWNLMLDGY 212
                                                            DV++WN  L  +
Sbjct: 822  TGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDDDDDGSDVIAWNKTLSWF 881

Query: 213  VELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFDQMPIRN----- 263
            ++  +   A   F  +    V    +++V MLS  A     LE  +    + +R+     
Sbjct: 882  LQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVA-GLNCLELGKQIHGIVVRSGLDQV 940

Query: 264  VVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR-------- 315
            V   N +I  YV+ G +  A  +F +M E + VSW TMI G   ++ L+E          
Sbjct: 941  VSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISG-CALSGLEECSVGMFVDLL 999

Query: 316  ---RLLDQMPYKNI-------------AAQ-----------------TAMISGYVQNKRM 342
                L DQ    ++             A Q                 T +I  Y ++ +M
Sbjct: 1000 RGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKM 1059

Query: 343  DEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF---------------------- 380
            +EA  +F      D+  WN M+ GY   G   +A+ L+                      
Sbjct: 1060 EEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAA 1119

Query: 381  -----------------RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
                             ++  N D+   + ++  Y +  +M+ A +IF E+    + V+W
Sbjct: 1120 GGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEI-PSPDDVAW 1178

Query: 424  NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
              +ISG ++N     AL  +  M     + D  T A  + AC+ L AL+ GRQIH   +K
Sbjct: 1179 TTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVK 1238

Query: 484  SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
                 D FV  SL+ MYAKCG I++A  LFK  +   + SWN++I G A +GNA EA++ 
Sbjct: 1239 LNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQF 1298

Query: 544  FEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLS 603
            FEEM   GV PD VTFIGVLSACSH GLV    + F  M ++Y IEP +EHY+C++D LS
Sbjct: 1299 FEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALS 1358

Query: 604  RAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYAL 663
            RAGR+ EA +++  M  + +A ++ TLL ACR+  + + G+   EKL  LEP  ++ Y L
Sbjct: 1359 RAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVL 1418

Query: 664  LSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNT 723
            LSN++A A +W+ V   R  M  +  +K PG SW+++KN++H F++GD     T  I N 
Sbjct: 1419 LSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNK 1478

Query: 724  LKTLAAQIR 732
            ++ +  +IR
Sbjct: 1479 VEYIMKRIR 1487



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 181/764 (23%), Positives = 320/764 (41%), Gaps = 159/764 (20%)

Query: 68   LFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKA 127
            L   +PQ   +  +++ A  L   K   AR +      PD F    +IT Y++ G L  A
Sbjct: 622  LIHSIPQWFSILRHAIAASDLPLGKRAHAR-ILTSGHHPDRFLTNNLITMYSKCGSLSSA 680

Query: 128  RELFDLLPN-KEDTACWNAMVAGYAKIG------------NYNEAKK----------LLD 164
            R+LFD  P+   D   WNA+++ +A               ++  A +          LL 
Sbjct: 681  RKLFDTTPDTSRDLVTWNAILSAHADKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLS 740

Query: 165  AMPS----------KNIVSWNSMLSG-----YTKNGEMHLASKFFEAMEERDVVSWNLML 209
            A PS          K  + W+  ++G     Y K G +  A   F+ M  RDVV WN+M+
Sbjct: 741  ASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMM 800

Query: 210  DGYVELDDLDSAWKFFQKI--------------------PEQNVVSW-VTMLSGYARNGR 248
              YV+      A   F +                      +QNV+ W +  L  Y     
Sbjct: 801  KAYVDTGLEYEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLF 860

Query: 249  MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDG 304
            M +           +V+AWN  ++ ++QRG+  EA   F++M       + +++  M+  
Sbjct: 861  MYDDDDDGS-----DVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSV 915

Query: 305  YVRIAKLDEARRL--------LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHD 356
               +  L+  +++        LDQ+    ++    +I+ YV+   +  A  +F ++   D
Sbjct: 916  VAGLNCLELGKQIHGIVVRSGLDQV----VSVGNCLINMYVKTGSVSRARTVFWQMNEVD 971

Query: 357  VVCWNVMIKGYAQCGRMDEAINLFRQMVNK------------------------------ 386
            +V WN MI G A  G  + ++ +F  ++                                
Sbjct: 972  LVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIH 1031

Query: 387  ----------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
                      D     T+I  Y++  +M++A  +F       +  SWNA++ G++ +   
Sbjct: 1032 ACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDG-FDLASWNAMMHGYIVSGDF 1090

Query: 437  LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSL 496
              AL++++LM + G++A+  TLA A  A   L  L+ G+QI  + +K G+  DLFV + +
Sbjct: 1091 PKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGV 1150

Query: 497  ITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
            + MY KCG +++A  +F +    D ++W ++I+G   NG    A+  +  M +  V PD 
Sbjct: 1151 LDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDE 1210

Query: 557  VTFIGVLSACSHVGLVDGGLKL------FECMTEVYAIEPLVEHYA-------------- 596
             TF  ++ ACS +  ++ G ++        C  + + +  LV+ YA              
Sbjct: 1211 YTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKR 1270

Query: 597  ----------CMIDLLSRAGRLDEA---FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLG 643
                       MI  L++ G  +EA   FE +K   + P+   +  +L AC     +   
Sbjct: 1271 TNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEA 1330

Query: 644  R---IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSM 684
                 +++K+  +EP+    Y+ L +  + AGR  E EKV  SM
Sbjct: 1331 YENFYSMQKIYGIEPE-IEHYSCLVDALSRAGRIREAEKVISSM 1373



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 131/611 (21%), Positives = 234/611 (38%), Gaps = 120/611 (19%)

Query: 15   VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            VF     +    K GR+ EA  +F  M  ++ V +N M+ AY   G   +A  LF +  +
Sbjct: 762  VFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNR 821

Query: 75   RNL-----------------------------------------------VSWNSMIAGY 87
              L                                               ++WN  ++ +
Sbjct: 822  TGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDDDDDGSDVIAWNKTLSWF 881

Query: 88   LHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKARELFDLLPNK---EDT 140
            L   +  EA + F  M       D  ++ +M++       LE  +++  ++      +  
Sbjct: 882  LQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVV 941

Query: 141  ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF------ 194
            +  N ++  Y K G+ + A+ +   M   ++VSWN+M+SG   +G    +   F      
Sbjct: 942  SVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRG 1001

Query: 195  ----EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRML 250
                +      V+     L G   L     A      +   + VS  T++  Y+++G+M 
Sbjct: 1002 GLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVS-TTLIDVYSKSGKME 1060

Query: 251  EARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYV 306
            EA  LF      ++ +WNAM+  Y+  G   +A RL+I M E     N ++         
Sbjct: 1061 EAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAG 1120

Query: 307  RIAKLDEARRLLDQMPYKNIAAQTAMISG----YVQNKRMDEANQIFDKIGTHDVVCWNV 362
             +  L + +++   +  +       +ISG    Y++   M+ A +IF++I + D V W  
Sbjct: 1121 GLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTT 1180

Query: 363  MIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAG--------------------- 397
            MI G  + G+ + A+  +  M    V  D  T+ T++                       
Sbjct: 1181 MISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLN 1240

Query: 398  --------------YAQIRQMDDAVKIFEEMGKRRNT---VSWNALISGFLQNEFHLDAL 440
                          YA+   ++DA  +F    KR NT    SWNA+I G  Q+    +AL
Sbjct: 1241 CAFDPFVMTSLVDMYAKCGNIEDARGLF----KRTNTSRIASWNAMIVGLAQHGNAEEAL 1296

Query: 441  KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ-IHHLAIKSGYVNDLFVGNSLITM 499
            + F  M   G   D  T    LSAC+H   +    +  + +    G   ++   + L+  
Sbjct: 1297 QFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDA 1356

Query: 500  YAKCGRIQNAE 510
             ++ GRI+ AE
Sbjct: 1357 LSRAGRIREAE 1367



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/141 (20%), Positives = 67/141 (47%), Gaps = 9/141 (6%)

Query: 16   FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
            F     +    K G +E+A  +F + +     ++N+MI   A++G   +A + FE+M  R
Sbjct: 1246 FVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSR 1305

Query: 76   NL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEK 126
             +    V++  +++   H+  V EA E F  M       P++  ++ ++   +R G + +
Sbjct: 1306 GVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIRE 1365

Query: 127  ARELFDLLPNKEDTACWNAMV 147
            A ++   +P +   + +  ++
Sbjct: 1366 AEKVISSMPFEASASMYRTLL 1386


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 215/685 (31%), Positives = 352/685 (51%), Gaps = 75/685 (10%)

Query: 96  ARELFDKMFRPDLFSWALMITCYTRKGELEKA----RELFDLLPNKEDTACWNAMVAGYA 151
           AR+L      PDL SW+ +I+ Y + G  E+A     E++ LL  K +   +++++ G +
Sbjct: 101 ARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMY-LLGAKGNEFTFSSVLKGCS 159

Query: 152 KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
              N    K++        +     M+S      E  L S    A    +  ++ + + G
Sbjct: 160 LTRNLELGKQI------HRVALVTEMISTGISPNEFSL-STVLNACAGLEDENYGMKVHG 212

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
           Y+     DS           +  S   +L  YA++G    A  +F ++P  ++V+WNA+I
Sbjct: 213 YLIKLGYDS-----------DPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVI 261

Query: 272 AAYVQRGQIEEAARLFIEMPE-RNPVSWTTMID--------GYVRIAK-LDEARRLLDQM 321
           A  V   + + A +L  +M   R   S  T+          G V++ + L  A   +D  
Sbjct: 262 AGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDME 321

Query: 322 PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
           P   +     +I  Y +   + +A  +FD +   DV+ WN +I GY+ CG   EA++LF 
Sbjct: 322 PDSFVG--VGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFT 379

Query: 382 QMVNK---------------------------------------DIVTWNTMIAGYAQIR 402
            M  +                                       D    N+++  Y +  
Sbjct: 380 NMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCC 439

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
            ++DA K+FE +    + V++ ++I+ + Q     +ALK+++ M     K D    +   
Sbjct: 440 LLEDAAKVFE-VCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLF 498

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
           +ACA+L+A + G+QIH   +K G ++D+F GNSL+ MYAKCG I +A  +F +     ++
Sbjct: 499 NACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIV 558

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           SW+++I G A +G+  +A++LF +M+  G+ P+ +T + VLSAC+H GLV    + F  M
Sbjct: 559 SWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLM 618

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKL 642
            +++ I P  EHYACM+D+L R GRLDEA  +VK M  + +A +WG LLGA R+H+NI+L
Sbjct: 619 EKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIEL 678

Query: 643 GRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKN 702
           GR A E L  LEP+K+  + LL+N++A  G WD V KVR SM+ S  +K+PG SWIE+K+
Sbjct: 679 GRHAAEMLLTLEPEKSGTHILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKD 738

Query: 703 QIHTFLSGDPKQCRTAEICNTLKTL 727
           +++TF+ GD    R+ EI   L  L
Sbjct: 739 KVYTFIVGDRSHPRSKEIYVKLDDL 763


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 184/563 (32%), Positives = 302/563 (53%), Gaps = 50/563 (8%)

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP----IRNVVAWNA 269
             D L  A   F+ I E N++ W TM  G+A +   + A +L+  M     + N   +  
Sbjct: 80  HFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPF 139

Query: 270 MIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           ++ +  +    +E  ++   +     + +    T++I  YV+  +L++AR++ D+ P+++
Sbjct: 140 LLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRD 199

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-- 383
           + + TA+I GY     ++ A ++FD+I   DVV WN MI GYA+ G   EA+ LF++M  
Sbjct: 200 VVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMK 259

Query: 384 ------------------------VNKDIVTW-------------NTMIAGYAQIRQMDD 406
                                   + + + +W             N+++  Y++  +++ 
Sbjct: 260 TNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELET 319

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
           A  +FE +   ++ +SWN LI G+     + +AL +F  M + G++ +  T+   L ACA
Sbjct: 320 ACGLFEGL-LYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACA 378

Query: 467 HLAALQLGRQIHHLAIK--SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
           HL A+ +GR IH    K      N   +  SLI MYAKCG I+ A  +F       + SW
Sbjct: 379 HLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSW 438

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           N++I G+A++G A  A  +F  M   G+ PD +TF+G+LSACS  G++D G  +F  MT+
Sbjct: 439 NAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQ 498

Query: 585 VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
            Y I P +EHY CMIDLL  +G   EA EM+  M+++P+  IW +LL AC++  N++LG 
Sbjct: 499 DYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGE 558

Query: 645 IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQI 704
              + L ++EP+   CY LLSN++A AGRW+EV K+R  +   G +K PGCS IE+ + +
Sbjct: 559 SFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVV 618

Query: 705 HTFLSGDPKQCRTAEICNTLKTL 727
           H F+ GD    R  EI   L+ +
Sbjct: 619 HEFIIGDKFHPRNREIYGMLEEM 641



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 109/417 (26%), Positives = 199/417 (47%), Gaps = 43/417 (10%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL----- 88
           AI +F  + + N + +N+M   +A +     A KL+  M    L+  NS    +L     
Sbjct: 87  AISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLP-NSYTFPFLLKSCA 145

Query: 89  HNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWN 144
            +   KE +++   + +     DLF    +I+ Y + G LE AR++FD  P++ D   + 
Sbjct: 146 KSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHR-DVVSYT 204

Query: 145 AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV-- 202
           A++ GYA  G    A+KL D +P K++VSWN+M+SGY + G    A + F+ M + ++  
Sbjct: 205 ALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRP 264

Query: 203 -------VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLE 251
                  V       G +EL     +W     I +    S +    +++  Y++ G +  
Sbjct: 265 DESTMVTVVSACAQSGSIELGRQVHSW-----IDDHGFGSNLKIVNSLMDLYSKCGELET 319

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM---PER-NPVSWTTMIDGYVR 307
           A  LF+ +  ++V++WN +I  Y      +EA  LF EM    ER N V+  +++     
Sbjct: 320 ACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAH 379

Query: 308 IAKLDEARRLLDQMPYKNIAA------QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWN 361
           +  +D  R +   +  +  +A      +T++I  Y +   ++ A+Q+F+ I    +  WN
Sbjct: 380 LGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWN 439

Query: 362 VMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            MI G+A  GR D A ++F +M    +  D +T+  +++  ++   +D    IF  M
Sbjct: 440 AMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTM 496



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 162/328 (49%), Gaps = 21/328 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F     I+   ++GR+E+A K+F +   ++ V+Y ++I  YA  G +  A+KLF+++P 
Sbjct: 169 LFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPV 228

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKAREL 130
           +++VSWN+MI+GY      KEA ELF +M     RPD  +   +++   + G +E  R++
Sbjct: 229 KDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQV 288

Query: 131 FDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
              + +     +    N+++  Y+K G    A  L + +  K+++SWN+++ GYT     
Sbjct: 289 HSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLY 348

Query: 188 HLASKFFEAM----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ-----NVVSWVT 238
             A   F+ M    E  + V+   +L     L  +D        I ++     N  S  T
Sbjct: 349 KEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRT 408

Query: 239 -MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ER 293
            ++  YA+ G +  A ++F+ +  +++ +WNAMI  +   G+ + A  +F  M     E 
Sbjct: 409 SLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEP 468

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           + +++  ++    R   LD  R +   M
Sbjct: 469 DDITFVGLLSACSRSGMLDLGRHIFRTM 496



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 100/230 (43%), Gaps = 27/230 (11%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMS----QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           N  I      GR + A  IFS+M     + + +T+  ++SA +++G ++  R +F  M Q
Sbjct: 439 NAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQ 498

Query: 75  -----RNLVSWNSMIAGYLHNDKVKEARELFDKM-FRPDLFSWALMITCYTRKGELEK-- 126
                  L  +  MI    H+   KEA E+ + M   PD   W  ++     +G +E   
Sbjct: 499 DYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGE 558

Query: 127 --ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKL--------LDAMPSKNIVSWNS 176
             A+ L  + P  E+  C+  +   YA  G +NE  K+        +  +P  + +  +S
Sbjct: 559 SFAQNLIKIEP--ENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDS 616

Query: 177 MLSGYTKNGEMHLASK-FFEAMEERDVV--SWNLMLDGYVELDDLDSAWK 223
           ++  +    + H  ++  +  +EE +V+      + D    L +++  WK
Sbjct: 617 VVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWK 666


>gi|297823509|ref|XP_002879637.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325476|gb|EFH55896.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 196/616 (31%), Positives = 311/616 (50%), Gaps = 37/616 (6%)

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDV 202
           +A  AK G    A+++ D M  ++ V+WN+ML+ Y+  G    A   F  +     + D 
Sbjct: 11  IASLAKSGRITSARQMFDEMTDRDTVAWNTMLTSYSHLGLHQEAIALFTQLRFSDSKPDD 70

Query: 203 VSWNLMLDGYVELDDLDSAWK---------FFQKIPEQNVVSWVTMLSGYARNGRMLEAR 253
            S+  +L     L ++    K         F    P  N     +++  Y +    L A 
Sbjct: 71  YSFTAILSTCGSLGNVRLGRKIQSLVIRSGFCASSPVNN-----SLIDMYGKCSDTLSAN 125

Query: 254 RLFDQMPI--RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKL 311
           ++F  M    RN V W +++ AY+   Q E A  +F+EMP+R P +W  MI G+ +  K+
Sbjct: 126 KVFRDMCCHSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVPFAWNIMISGHAQCGKI 185

Query: 312 DEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC---W-------N 361
           +   RL  +M            S  + N   D +N ++  +  H V+    W       N
Sbjct: 186 ESCLRLFKEMLESEFEPDCFTFSS-LMNACADSSNVVYGWM-VHAVMVRNGWYSAVEAKN 243

Query: 362 VMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
            ++  YA+ G  D+ +     +     V+WN++I    ++ + D A+++F  +   +N V
Sbjct: 244 SVLSFYAKLGCKDDVMRELESIEVLTQVSWNSIIDACVKVGETDKALEVFR-LAPEKNIV 302

Query: 422 SWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLA 481
           +W  +I+G+ +N     AL+ FV M + G  +DH      L AC+ LA L  G+ IH   
Sbjct: 303 TWTTMIAGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGKMIHGCL 362

Query: 482 IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
           I  G+    +VGN+L+ +YAKCG I+ +   F D    D++SWN+++  + ++G A +A+
Sbjct: 363 IHCGFQGYAYVGNALVNLYAKCGDIKESNRAFGDIANKDLVSWNTMLFAFGVHGLADQAL 422

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601
           +L++ M+  G+ PD VTFIG+L+ CSH GLV+ G  +FE M + Y I   V+H  CMID+
Sbjct: 423 ELYDNMIASGIKPDNVTFIGLLTTCSHSGLVEKGCAIFESMVKDYGIPLEVDHVTCMIDM 482

Query: 602 LSRAGRLDEAFEMVKGMKI----KPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK 657
             R G L EA ++            N   W  LLGAC  H + +LGR   + L   EP +
Sbjct: 483 FGRGGHLAEAKDLATTYNSLVINASNNSSWEALLGACSTHWHTELGREVSKVLKIAEPSE 542

Query: 658 TSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRT 717
              + LLSN++  +GRW E E+VR  M   G +K PGCSWIEV N++ TF+ G     R 
Sbjct: 543 ELSFVLLSNLYCSSGRWKEAEEVRREMVERGMRKTPGCSWIEVGNRVSTFVVGGSSHPRL 602

Query: 718 AEICNTLKTLAAQIRN 733
            E+  TL  L  ++RN
Sbjct: 603 EELSETLNCLQHEMRN 618



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 143/577 (24%), Positives = 258/577 (44%), Gaps = 70/577 (12%)

Query: 47  VTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM--- 103
           V   S I++ AK+GR+  AR++F++M  R+ V+WN+M+  Y H    +EA  LF ++   
Sbjct: 5   VRLTSKIASLAKSGRITSARQMFDEMTDRDTVAWNTMLTSYSHLGLHQEAIALFTQLRFS 64

Query: 104 -FRPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEA 159
             +PD +S+  +++     G +   R++  L+        +   N+++  Y K  +   A
Sbjct: 65  DSKPDDYSFTAILSTCGSLGNVRLGRKIQSLVIRSGFCASSPVNNSLIDMYGKCSDTLSA 124

Query: 160 KKLLDAM--PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDD 217
            K+   M   S+N V+W S+L  Y    +   A   F  M +R   +WN+M+ G+ +   
Sbjct: 125 NKVFRDMCCHSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVPFAWNIMISGHAQCGK 184

Query: 218 LDSAWKFFQKIPE--------------------QNVV-SWV------------------T 238
           ++S  + F+++ E                     NVV  W+                  +
Sbjct: 185 IESCLRLFKEMLESEFEPDCFTFSSLMNACADSSNVVYGWMVHAVMVRNGWYSAVEAKNS 244

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW 298
           +LS YA+ G   +  R  + + +   V+WN++I A V+ G+ ++A  +F   PE+N V+W
Sbjct: 245 VLSFYAKLGCKDDVMRELESIEVLTQVSWNSIIDACVKVGETDKALEVFRLAPEKNIVTW 304

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNI-------AAQTAMISG--YVQNKRMDEANQIF 349
           TTMI GY R    ++A R   +M    +        A     SG   + + +M     I 
Sbjct: 305 TTMIAGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGKMIHGCLIH 364

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVK 409
                +  V  N ++  YA+CG + E+   F  + NKD+V+WNTM+  +      D A++
Sbjct: 365 CGFQGYAYV-GNALVNLYAKCGDIKESNRAFGDIANKDLVSWNTMLFAFGVHGLADQALE 423

Query: 410 IFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK---KADHSTLACAL- 462
           +++ M   G + + V++  L++    +        IF  M ++     + DH T    + 
Sbjct: 424 LYDNMIASGIKPDNVTFIGLLTTCSHSGLVEKGCAIFESMVKDYGIPLEVDHVTCMIDMF 483

Query: 463 SACAHLA-ALQLGRQIHHLAIKSGYVN--DLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
               HLA A  L    + L I +   +  +  +G      + + GR      + K A+P 
Sbjct: 484 GRGGHLAEAKDLATTYNSLVINASNNSSWEALLGACSTHWHTELGR--EVSKVLKIAEPS 541

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
           + +S+  L   Y  +G   EA ++  EMV  G+   P
Sbjct: 542 EELSFVLLSNLYCSSGRWKEAEEVRREMVERGMRKTP 578



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 105/442 (23%), Positives = 170/442 (38%), Gaps = 120/442 (27%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +     KI  L KSGR+  A ++F +M+ ++TV +N+M+++Y+  G   +A  LF Q+
Sbjct: 2   SVLVRLTSKIASLAKSGRITSARQMFDEMTDRDTVAWNTMLTSYSHLGLHQEAIALFTQL 61

Query: 73  ------PQ--------------------RNLVSW-------------NSMIAGYLHNDKV 93
                 P                     R + S              NS+I  Y      
Sbjct: 62  RFSDSKPDDYSFTAILSTCGSLGNVRLGRKIQSLVIRSGFCASSPVNNSLIDMYGKCSDT 121

Query: 94  KEARELFDKM--FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYA 151
             A ++F  M     +  +W  ++  Y    + E A ++F  +P +   A WN M++G+A
Sbjct: 122 LSANKVFRDMCCHSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVPFA-WNIMISGHA 180

Query: 152 KIGNYNEAKKLLDAM--------------------PSKNIV-SW---------------- 174
           + G      +L   M                     S N+V  W                
Sbjct: 181 QCGKIESCLRLFKEMLESEFEPDCFTFSSLMNACADSSNVVYGWMVHAVMVRNGWYSAVE 240

Query: 175 --NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQN 232
             NS+LS Y K G      +  E++E    VSWN ++D  V++ + D A + F+  PE+N
Sbjct: 241 AKNSVLSFYAKLGCKDDVMRELESIEVLTQVSWNSIIDACVKVGETDKALEVFRLAPEKN 300

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPIRNV---------------------------- 264
           +V+W TM++GY RNG   +A R F +M    V                            
Sbjct: 301 IVTWTTMIAGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGKMIHG 360

Query: 265 -----------VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDE 313
                         NA++  Y + G I+E+ R F ++  ++ VSW TM+  +      D+
Sbjct: 361 CLIHCGFQGYAYVGNALVNLYAKCGDIKESNRAFGDIANKDLVSWNTMLFAFGVHGLADQ 420

Query: 314 ARRLLDQMPYKNIAAQTAMISG 335
           A  L D M    I        G
Sbjct: 421 ALELYDNMIASGIKPDNVTFIG 442



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 75/335 (22%), Positives = 148/335 (44%), Gaps = 28/335 (8%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V  +N  ++   K G  ++ ++    +     V++NS+I A  K G  + A ++F   
Sbjct: 237 SAVEAKNSVLSFYAKLGCKDDVMRELESIEVLTQVSWNSIIDACVKVGETDKALEVFRLA 296

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAR 128
           P++N+V+W +MIAGY  N   ++A   F +M +     D F++  ++   +    L   +
Sbjct: 297 PEKNIVTWTTMIAGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGK 356

Query: 129 ELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
            +   L +   +      NA+V  YAK G+  E+ +    + +K++VSWN+ML  +  +G
Sbjct: 357 MIHGCLIHCGFQGYAYVGNALVNLYAKCGDIKESNRAFGDIANKDLVSWNTMLFAFGVHG 416

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVELDD----LDSAWKFFQK------IPEQNVVS 235
               A + ++ M    +   N+   G +        ++     F+       IP +  V 
Sbjct: 417 LADQALELYDNMIASGIKPDNVTFIGLLTTCSHSGLVEKGCAIFESMVKDYGIPLE--VD 474

Query: 236 WVT-MLSGYARNGRMLEARRL---FDQMPIR--NVVAWNAMIAAYVQRGQIE---EAARL 286
            VT M+  + R G + EA+ L   ++ + I   N  +W A++ A       E   E +++
Sbjct: 475 HVTCMIDMFGRGGHLAEAKDLATTYNSLVINASNNSSWEALLGACSTHWHTELGREVSKV 534

Query: 287 FIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
                    +S+  + + Y    +  EA  +  +M
Sbjct: 535 LKIAEPSEELSFVLLSNLYCSSGRWKEAEEVRREM 569



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 93/205 (45%), Gaps = 11/205 (5%)

Query: 494 NSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA 553
            S I   AK GRI +A  +F +    D ++WN+++  Y+  G   EAI LF ++      
Sbjct: 8   TSKIASLAKSGRITSARQMFDEMTDRDTVAWNTMLTSYSHLGLHQEAIALFTQLRFSDSK 67

Query: 554 PDPVTFIGVLSACSHVGLVDGGLKLFECM--TEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
           PD  +F  +LS C  +G V  G K+   +  +   A  P+      +ID+  +      A
Sbjct: 68  PDDYSFTAILSTCGSLGNVRLGRKIQSLVIRSGFCASSPVNNS---LIDMYGKCSDTLSA 124

Query: 612 FEMVKGMKIKP-NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAE 670
            ++ + M     N   W +LL A   + N +    A++   E+  +    + ++ + HA+
Sbjct: 125 NKVFRDMCCHSRNEVTWCSLLFA---YMNAEQFEAALDVFVEMPKRVPFAWNIMISGHAQ 181

Query: 671 AGRWDEVEKVRVSMEGSGAQKQPGC 695
            G+ +    +R+  E   ++ +P C
Sbjct: 182 CGKIESC--LRLFKEMLESEFEPDC 204


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 210/692 (30%), Positives = 342/692 (49%), Gaps = 104/692 (15%)

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKN--IVSWNSMLSGYTKNGEMHLASKFFEAMEE---- 199
           +++ Y  +G  + A  LL   P  +  +  WNS++  Y  NG  +     F  M      
Sbjct: 65  LISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWT 124

Query: 200 RDVVSWNLMLDGYVELDDL---DSAWKFFQKIP-EQNVVSWVTMLSGYARNGRMLEARRL 255
            D  ++  +     E+  +   DS+    +      NV     +++ Y+R G + +AR++
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKV 184

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM-------PE---------------- 292
           FD+MP+ +VV+WN++I +Y + G+ + A  +F +M       P+                
Sbjct: 185 FDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGT 244

Query: 293 -----------------RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG 335
                            +N      ++D Y +   +DEA  +   MP K++ +  AM++G
Sbjct: 245 RSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAG 304

Query: 336 YVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI--- 388
           Y Q  R ++A ++F+++       DVV W+  I GYAQ G   EA+ + RQM++  I   
Sbjct: 305 YSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPN 364

Query: 389 -VTWNTMIAG------------------------------------------YAQIRQMD 405
            VT  ++++G                                          YA+ +++D
Sbjct: 365 EVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVD 424

Query: 406 DAVKIFEEMG-KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG--KKADHSTLACAL 462
            A  +F+ +  K R+ V+W  +I G+ Q+     AL++   M +E    + +  T++CAL
Sbjct: 425 IARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCAL 484

Query: 463 SACAHLAALQLGRQIHHLAIKSGY-VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
            ACA LAAL +G+QIH  A+++      LFV N LI MYAKCG I +A L+F +    + 
Sbjct: 485 VACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNE 544

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC 581
           ++W SL+ GY ++G   EA+ +FEEM   G   D VT + VL ACSH G++D G++ F  
Sbjct: 545 VTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNR 604

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIK 641
           M   + + P  EHYAC++DLL RAGRL+ A  +++ M ++P   +W  LL  CR+H  ++
Sbjct: 605 MKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVE 664

Query: 642 LGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVK 701
           LG  A +K++EL       Y LLSNM+A AGRW +V ++R  M   G +K+PGCSW+E  
Sbjct: 665 LGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGI 724

Query: 702 NQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
               TF  GD       EI   L     +I++
Sbjct: 725 KGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKD 756



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 171/668 (25%), Positives = 289/668 (43%), Gaps = 124/668 (18%)

Query: 14  YVFNQNKKITQLGKSGRVEEAI-KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           +VF    +I+ + + G    A+ ++   MS  N    N++++ Y++ G ++DARK+F++M
Sbjct: 132 FVFKACGEISSV-RCGDSSHALSRVTGFMS--NVFVGNALVAMYSRCGSLSDARKVFDEM 188

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKA 127
           P  ++VSWNS+I  Y    K K A E+F KM     FRPD  +   ++      G     
Sbjct: 189 PVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLG 248

Query: 128 RELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
           ++        E   +    N +V  YAK G  +EA  +   MP K++VSWN+M++GY++ 
Sbjct: 249 KQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQI 308

Query: 185 GEMHLASKFFEAMEER----DVVSWNLMLDGYVE----LDDLDSAWKFFQKIPEQNVVSW 236
           G    A + FE M+E     DVV+W+  + GY +     + L    +      + N V+ 
Sbjct: 309 GRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTL 368

Query: 237 VTMLSGYARNGRMLEARRLF-----DQMPIR-------NVVAWNAMIAAYVQRGQIEEAA 284
           +++LSG A  G ++  + +        M +R       N+V  N +I  Y +  +++ A 
Sbjct: 369 ISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVI-NQLIDMYAKCKKVDIAR 427

Query: 285 RLF--IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ------------T 330
            +F  +   ER+ V+WT MI GY +    ++A  LL +M  ++   +             
Sbjct: 428 AMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVAC 487

Query: 331 AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
           A ++     K++  A  + ++     +   N +I  YA+CG + +A  +F  M+ K+ VT
Sbjct: 488 ASLAALSIGKQI-HAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVT 546

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
           W +++ GY      ++A+ IFEEM  RR                               G
Sbjct: 547 WTSLMTGYGMHGYGEEALGIFEEM--RR------------------------------IG 574

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
            K D  TL   L AC+H   +  G +         Y N          M    G     E
Sbjct: 575 FKLDGVTLLVVLYACSHSGMIDQGME---------YFN---------RMKTDFGVSPGPE 616

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
                        +  L+      G    A++L EEM ME   P PV ++ +LS C   G
Sbjct: 617 ------------HYACLVDLLGRAGRLNAALRLIEEMPME---PPPVVWVALLSCCRIHG 661

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV-----KGMKIKPNA- 624
            V+ G    + +TE+ +       Y  + ++ + AGR  +   +      KG+K +P   
Sbjct: 662 KVELGEYAAKKITELASNND--GSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCS 719

Query: 625 ---GIWGT 629
              GI GT
Sbjct: 720 WVEGIKGT 727



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 114/498 (22%), Positives = 214/498 (42%), Gaps = 84/498 (16%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S VF  N  +    + G + +A K+F +M   + V++NS+I +YAK G+   A ++F +M
Sbjct: 160 SNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKM 219

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR---------PDLFSWALMITCYTRKGE 123
                   + +    +             K F           ++F    ++  Y + G 
Sbjct: 220 TNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGM 279

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSMLS 179
           +++A  +F  +P K D   WNAMVAGY++IG + +A +L + M  +    ++V+W++ +S
Sbjct: 280 MDEANTVFSNMPVK-DVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAIS 338

Query: 180 GYTKNG----EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWK---FFQKIP--- 229
           GY + G     + +  +   +  + + V+   +L G   +  L    +   +  K P   
Sbjct: 339 GYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDL 398

Query: 230 ------EQNVVSWVTMLSGYARNGRMLEARRLFDQMPI--RNVVAWNAMIAAYVQRGQIE 281
                 ++N+V    ++  YA+  ++  AR +FD +    R+VV W  MI  Y Q G   
Sbjct: 399 RKNGHGDENMV-INQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDAN 457

Query: 282 EAARLFIEMPERN----PVSWT-------------------------------------- 299
           +A  L  EM E +    P ++T                                      
Sbjct: 458 KALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSN 517

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD---KIGTH- 355
            +ID Y +   + +AR + D M  KN    T++++GY  +   +EA  IF+   +IG   
Sbjct: 518 CLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKL 577

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQM-----VNKDIVTWNTMIAGYAQIRQMDDAVKI 410
           D V   V++   +  G +D+ +  F +M     V+     +  ++    +  +++ A+++
Sbjct: 578 DGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRL 637

Query: 411 FEEMGKRRNTVSWNALIS 428
            EEM      V W AL+S
Sbjct: 638 IEEMPMEPPPVVWVALLS 655


>gi|297844244|ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 471

 Score =  336 bits (862), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 173/418 (41%), Positives = 257/418 (61%), Gaps = 3/418 (0%)

Query: 314 ARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRM 373
           A ++  +M  KN+   T+MI+GY+ NK +  A + FD     D+V WN M+ GY + G M
Sbjct: 44  ANKVFCEMVEKNVVIWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMVAGYIEMGNM 103

Query: 374 DEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433
            EA +LF QM  +D+++WNT++ GYA I  M+   ++F+EM   RN  SWN LI G+ QN
Sbjct: 104 MEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDEM-LERNVFSWNGLIKGYAQN 162

Query: 434 EFHLDALKIFVLMTQEGKK-ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN-DLF 491
               + L  F  M  EG    + +TL   LSACA L A   G+++H      GY   D+ 
Sbjct: 163 GRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENLGYNKVDVN 222

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
           V N+LI MY KCG I+ A  +FK     D+ISWN++I G A +G+ TEA+ LF EM   G
Sbjct: 223 VKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLFHEMKNCG 282

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
           ++PD VTF+GVL AC H+GLV+ GL  F  M   ++I P +EH  C++DLLSRAG L +A
Sbjct: 283 ISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSITPQIEHCGCVVDLLSRAGFLTQA 342

Query: 612 FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEA 671
            E +  M +K +A IW TLLGA ++++ +  G +A+++L +LEP+  + + +LSN++ +A
Sbjct: 343 VEFINKMPVKADAVIWATLLGASKVYKKVDTGELALKELIKLEPRNPANFVMLSNIYGDA 402

Query: 672 GRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAA 729
           GR+D+  +++V+M  +G +K+ G SWIE  + +  F S   K  RT E+   L  L +
Sbjct: 403 GRFDDAARLKVAMRDTGFKKEAGISWIETDDGLVKFYSSGEKHPRTEELQRILGELKS 460



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 128/451 (28%), Positives = 208/451 (46%), Gaps = 82/451 (18%)

Query: 190 ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRM 249
           A+K F  M E++VV W  M++GY+   DL SA ++F   PE+++V W TM++GY   G M
Sbjct: 44  ANKVFCEMVEKNVVIWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMVAGYIEMGNM 103

Query: 250 LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIA 309
           +EAR LFDQMP R+V++WN ++  Y   G +E   R+F EM ERN  SW  +I GY +  
Sbjct: 104 MEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDEMLERNVFSWNGLIKGYAQNG 163

Query: 310 KLDEA----RRLLDQMP-YKNIAAQTAMISGYVQNKRMDEANQIF---DKIGTH--DVVC 359
           ++ E     +R++D+   + N A  T ++S   +    D   ++    + +G +  DV  
Sbjct: 164 RVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENLGYNKVDVNV 223

Query: 360 WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRN 419
            N +I  Y +CG ++ A+ +F+ +  +D+++WNTMI G A      +A+ +F EM   +N
Sbjct: 224 KNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLFHEM---KN 280

Query: 420 TVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHH 479
                                         G   D  T    L AC H+  ++ G     
Sbjct: 281 C-----------------------------GISPDKVTFVGVLCACKHMGLVEDGL---- 307

Query: 480 LAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATE 539
                 Y N +F   S+      CG +            VD++S     AG+      T+
Sbjct: 308 -----AYFNSMFTDFSITPQIEHCGCV------------VDLLSR----AGF-----LTQ 341

Query: 540 AIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACM 598
           A++   +M    V  D V +  +L A      VD G      + E+  +EP    ++  +
Sbjct: 342 AVEFINKM---PVKADAVIWATLLGASKVYKKVDTGEL---ALKELIKLEPRNPANFVML 395

Query: 599 IDLLSRAGRLDEAFEMVKGMK---IKPNAGI 626
            ++   AGR D+A  +   M+    K  AGI
Sbjct: 396 SNIYGDAGRFDDAARLKVAMRDTGFKKEAGI 426



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 157/303 (51%), Gaps = 17/303 (5%)

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
           ++REL  ++  K  T   N M   +  + +   A K+   M  KN+V W SM++GY  N 
Sbjct: 14  ESREL--VMHAKCSTESLNQMFL-FGTLCSMVSANKVFCEMVEKNVVIWTSMINGYLLNK 70

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR 245
           ++  A ++F+   ERD+V WN M+ GY+E+ ++  A   F ++P ++V+SW T+L GYA 
Sbjct: 71  DLVSARRYFDLSPERDIVLWNTMVAGYIEMGNMMEARSLFDQMPCRDVMSWNTVLEGYAN 130

Query: 246 NGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER-----NPVSWTT 300
            G M    R+FD+M  RNV +WN +I  Y Q G++ E    F  M +      N  + T 
Sbjct: 131 IGDMEACERVFDEMLERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVFPNDATLTL 190

Query: 301 MIDGYVRIAKLDEARRLL---DQMPYK--NIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
           ++    ++   D  +R+    + + Y   ++  + A+I  Y +   ++ A ++F  I   
Sbjct: 191 VLSACAKLGAFDFGKRVHKYGENLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRR 250

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIF 411
           D++ WN MI G A  G   EA++LF +M    ++ D VT+  ++     +  ++D +  F
Sbjct: 251 DLISWNTMINGLAAHGHGTEALDLFHEMKNCGISPDKVTFVGVLCACKHMGLVEDGLAYF 310

Query: 412 EEM 414
             M
Sbjct: 311 NSM 313



 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 111/419 (26%), Positives = 190/419 (45%), Gaps = 46/419 (10%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKV 93
           A K+F +M +KN V + SMI+ Y  N  +  AR+ F+  P+R++V WN+M+AGY+    +
Sbjct: 44  ANKVFCEMVEKNVVIWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMVAGYIEMGNM 103

Query: 94  KEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKI 153
            EAR LFD+M   D+ SW  ++  Y   G++E    +FD +  + +   WN ++ GYA+ 
Sbjct: 104 MEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDEMLER-NVFSWNGLIKGYAQN 162

Query: 154 GNYNEA----KKLLD-AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME-----ERDVV 203
           G  +E     K+++D      N  +   +LS   K G      +  +  E     + DV 
Sbjct: 163 GRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENLGYNKVDVN 222

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRN 263
             N ++D Y +   ++ A + F+ I  ++++SW TM++G A +G   EA  LF +M    
Sbjct: 223 VKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLFHEMKNCG 282

Query: 264 V----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVRIAKLDEA 314
           +    V +  ++ A    G +E+    F  M     ++        ++D   R   L +A
Sbjct: 283 ISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSITPQIEHCGCVVDLLSRAGFLTQA 342

Query: 315 RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWN------------V 362
              +++MP K  A   A + G         A++++ K+ T ++                V
Sbjct: 343 VEFINKMPVKADAVIWATLLG---------ASKVYKKVDTGELALKELIKLEPRNPANFV 393

Query: 363 MIKG-YAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
           M+   Y   GR D+A  L   M +    T     AG + I   D  VK +    K   T
Sbjct: 394 MLSNIYGDAGRFDDAARLKVAMRD----TGFKKEAGISWIETDDGLVKFYSSGEKHPRT 448



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 176/384 (45%), Gaps = 29/384 (7%)

Query: 96  ARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGN 155
           A ++F +M   ++  W  MI  Y    +L  AR  FDL P + D   WN MVAGY ++GN
Sbjct: 44  ANKVFCEMVEKNVVIWTSMINGYLLNKDLVSARRYFDLSPER-DIVLWNTMVAGYIEMGN 102

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
             EA+ L D MP ++++SWN++L GY   G+M    + F+ M ER+V SWN ++ GY + 
Sbjct: 103 MMEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDEMLERNVFSWNGLIKGYAQN 162

Query: 216 DDLDSAWKFFQKIPEQ-----NVVSWVTMLSGYARNGRMLEARRL--------FDQMPIR 262
             +      F+++ ++     N  +   +LS  A+ G     +R+        ++++   
Sbjct: 163 GRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENLGYNKV--- 219

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
           +V   NA+I  Y + G IE A  +F  +  R+ +SW TMI+G        EA  L  +M 
Sbjct: 220 DVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLFHEMK 279

Query: 323 YKNIAAQTAMISGYV-QNKRMDEA-------NQIFDKIG-THDVVCWNVMIKGYAQCGRM 373
              I+       G +   K M          N +F     T  +     ++   ++ G +
Sbjct: 280 NCGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSITPQIEHCGCVVDLLSRAGFL 339

Query: 374 DEAINLFRQM-VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK--RRNTVSWNALISGF 430
            +A+    +M V  D V W T++      +++D      +E+ K   RN  ++  L + +
Sbjct: 340 TQAVEFINKMPVKADAVIWATLLGASKVYKKVDTGELALKELIKLEPRNPANFVMLSNIY 399

Query: 431 LQNEFHLDALKIFVLMTQEGKKAD 454
                  DA ++ V M   G K +
Sbjct: 400 GDAGRFDDAARLKVAMRDTGFKKE 423



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 149/316 (47%), Gaps = 32/316 (10%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL 88
           G + EA  +F QM  ++ +++N+++  YA  G +    ++F++M +RN+ SWN +I GY 
Sbjct: 101 GNMMEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDEMLERNVFSWNGLIKGYA 160

Query: 89  HNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARELF----DLLPNKED 139
            N +V E    F +M       P+  +  L+++   + G  +  + +     +L  NK D
Sbjct: 161 QNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENLGYNKVD 220

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME- 198
               NA++  Y K G    A ++   +  ++++SWN+M++G   +G    A   F  M+ 
Sbjct: 221 VNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLFHEMKN 280

Query: 199 ---ERDVVSW----------NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR 245
                D V++           L+ DG    + + + +    +I     V  V +LS   R
Sbjct: 281 CGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSITPQIEHCGCV--VDLLS---R 335

Query: 246 NGRMLEARRLFDQMPIR-NVVAWNAMIAA---YVQRGQIEEAARLFIEMPERNPVSWTTM 301
            G + +A    ++MP++ + V W  ++ A   Y +    E A +  I++  RNP ++  +
Sbjct: 336 AGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDTGELALKELIKLEPRNPANFVML 395

Query: 302 IDGYVRIAKLDEARRL 317
            + Y    + D+A RL
Sbjct: 396 SNIYGDAGRFDDAARL 411


>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
          Length = 446

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 171/443 (38%), Positives = 266/443 (60%), Gaps = 8/443 (1%)

Query: 269 AMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA 328
           +++  Y + G + ++ ++F  MPERN V+W  MI GY+       A  L ++M  +    
Sbjct: 5   SLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVT 64

Query: 329 QTAMISGYVQNKRMDEANQIFDKIGTH--DVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
              MI G+ ++   + A + FD + +   +VV W VM+ GYA+   M+ A  +F  M  +
Sbjct: 65  WIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQR 124

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446
           +   W++MI+GY +   + +A  IF+ +   RN V+WN+LISG+ QN F  +AL+ F  M
Sbjct: 125 NFFAWSSMISGYCKKGNVKEARSIFDRI-PVRNLVNWNSLISGYAQNGFSEEALEAFGKM 183

Query: 447 TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI 506
             EG + D  T+A  LSAC+ L  L  G++IHH+    G   + FV N L+ MYAKCG +
Sbjct: 184 QAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDL 243

Query: 507 QNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
            NA L+F+     +   WNS+I+G+AI+G + EA++ F  M      PD +TF+ VLSAC
Sbjct: 244 ANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSAC 303

Query: 567 SHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGI 626
           +H G V+ GL++F  M E Y +   ++HY C+IDLL RAGR+ EA++++K M +KPN  +
Sbjct: 304 AHGGFVNAGLEIFSRM-EKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVV 362

Query: 627 WGTLLGACRMHQNIKLGRIAVEKLSELEPQKTS-C---YALLSNMHAEAGRWDEVEKVRV 682
           WG LLGACR+H ++++    VE++ +++   +S C   Y LLSN++A + RW++ EK+R+
Sbjct: 363 WGALLGACRVHLDMEMADRVVEEIVKVDSNISSGCDSHYVLLSNIYAASDRWEKAEKMRM 422

Query: 683 SMEGSGAQKQPGCSWIEVKNQIH 705
            M   G QK  GCS I   N  H
Sbjct: 423 EMANKGFQKTSGCSSIMPGNNTH 445



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 178/317 (56%), Gaps = 15/317 (4%)

Query: 114 MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS 173
           ++  Y + G +  +R++FD +P + +   WNAM+ GY   G+   A  L + M  +  V+
Sbjct: 6   LVCMYAKCGNVVDSRKVFDYMPER-NAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVT 64

Query: 174 WNSMLSGYTKNGEMHLASKFFEAM--EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ 231
           W  M+ G+ ++G+   A +FF+ +  E R+VV+W +M+DGY    ++++A + F+ +P++
Sbjct: 65  WIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQR 124

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
           N  +W +M+SGY + G + EAR +FD++P+RN+V WN++I+ Y Q G  EEA   F +M 
Sbjct: 125 NFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQ 184

Query: 292 ----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG----YVQNKRMD 343
               E + V+  +++    ++  LD  +++   M +K I     +++G    Y +   + 
Sbjct: 185 AEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLA 244

Query: 344 EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVTWNTMIAGYA 399
            A  IF+ +   +  CWN MI G+A  G+  EA+  F +M +     D +T+ ++++  A
Sbjct: 245 NARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACA 304

Query: 400 QIRQMDDAVKIFEEMGK 416
               ++  ++IF  M K
Sbjct: 305 HGGFVNAGLEIFSRMEK 321



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 194/390 (49%), Gaps = 18/390 (4%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFS 110
           S++  YAK G V D+RK+F+ MP+RN V+WN+MI GYL N   K A  LF+KM      +
Sbjct: 5   SLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVT 64

Query: 111 WALMITCYTRKGELEKARELFDLLPNK-EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK 169
           W  MI  + R G+ E AR  FD +P++  +   W  MV GYA+      A+++ + MP +
Sbjct: 65  WIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQR 124

Query: 170 NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP 229
           N  +W+SM+SGY K G +  A   F+ +  R++V+WN ++ GY +    + A + F K+ 
Sbjct: 125 NFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQ 184

Query: 230 ----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIE 281
               E + V+  ++LS  ++ G +   +++   M  +    N    N ++  Y + G + 
Sbjct: 185 AEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLA 244

Query: 282 EAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT----AMISGYV 337
            A  +F  M  RN   W +MI G+    +  EA     +M   +         +++S   
Sbjct: 245 NARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACA 304

Query: 338 QNKRMDEANQIFDKIGTHDVVC----WNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWN 392
               ++   +IF ++  + +      +  +I    + GR+ EA +L ++M V  + V W 
Sbjct: 305 HGGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWG 364

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
            ++        M+ A ++ EE+ K  + +S
Sbjct: 365 ALLGACRVHLDMEMADRVVEEIVKVDSNIS 394



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 173/364 (47%), Gaps = 35/364 (9%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQ--KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVS 79
           I    +SG  E A + F  +    +N VT+  M+  YA+N  +  AR++FE MPQRN  +
Sbjct: 69  IDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFA 128

Query: 80  WNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN--- 136
           W+SMI+GY     VKEAR +FD++   +L +W  +I+ Y + G  E+A E F  +     
Sbjct: 129 WSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGF 188

Query: 137 KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASK 192
           + D     ++++  +++G  +  KK+   M  K I       N ++  Y K G++  A  
Sbjct: 189 EPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARL 248

Query: 193 FFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARNGR 248
            FE M  R+   WN M+ G+        A +FF ++ +     + ++++++LS  A  G 
Sbjct: 249 IFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGF 308

Query: 249 MLEARRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER-NPVSWTTMID 303
           +     +F +M        +  +  +I    + G+I+EA  L   MP + N V W  ++ 
Sbjct: 309 VNAGLEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALL- 367

Query: 304 GYVRIA-KLDEARRLLDQMPYKNIAAQTAMISGYV---------------QNKRMDEANQ 347
           G  R+   ++ A R+++++   +    +   S YV               +  RM+ AN+
Sbjct: 368 GACRVHLDMEMADRVVEEIVKVDSNISSGCDSHYVLLSNIYAASDRWEKAEKMRMEMANK 427

Query: 348 IFDK 351
            F K
Sbjct: 428 GFQK 431



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 133/287 (46%), Gaps = 39/287 (13%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F  +  I+   K G V+EA  IF ++  +N V +NS+IS YA+NG   +A + F +M   
Sbjct: 127 FAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAE 186

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
                                       F PD  + A +++  ++ G L+  +++  ++ 
Sbjct: 187 G---------------------------FEPDEVTIASVLSACSQLGLLDAGKKIHHMMN 219

Query: 136 NKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
           +K    +    N +V  YAK G+   A+ + + M  +N   WNSM+SG+  +G+   A +
Sbjct: 220 HKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALE 279

Query: 193 FFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYA 244
           FF  ME+     D +++  +L        +++  + F ++ +  + + +     ++    
Sbjct: 280 FFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDLLG 339

Query: 245 RNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLFIEM 290
           R GR+ EA  L  +MP++ N V W A++ A      +E A R+  E+
Sbjct: 340 RAGRIKEAYDLIKRMPVKPNDVVWGALLGACRVHLDMEMADRVVEEI 386



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 81/159 (50%), Gaps = 8/159 (5%)

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
           +G SL+ MYAKCG + ++  +F      + ++WN++I GY  NG++  A+ LFE+M +  
Sbjct: 2   IGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIR- 60

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
                VT+I ++   +  G  +   + F+   +V +    V  +  M+D  +R   ++ A
Sbjct: 61  ---TAVTWIEMIDGFARSGDTETARRFFD---DVPSELRNVVTWTVMVDGYARNAEMEAA 114

Query: 612 FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL 650
            E+ +GM  + N   W +++       N+K  R   +++
Sbjct: 115 REVFEGMP-QRNFFAWSSMISGYCKKGNVKEARSIFDRI 152


>gi|345505228|gb|AEN99838.1| chlororespiratory reduction 4, partial [Matthiola incana]
          Length = 584

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 176/460 (38%), Positives = 276/460 (60%), Gaps = 11/460 (2%)

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY--KN 325
           N +I  Y++ G +  A ++F  MP+R+ VS+ +MIDGYV+   ++ AR L D MP   KN
Sbjct: 132 NCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMPREKKN 191

Query: 326 IAAQTAMISGYVQNKR-MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
           + +   MISGY Q++  ++ A+++FD++   D++ WN +I GY +  R+++A +LF  M 
Sbjct: 192 LISWNCMISGYTQSEDGVNVASKLFDEMPEKDLISWNSLIDGYVKHRRIEDAKSLFDLMP 251

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
            KD+VTW TMI GYA++  +  A K+F+EM  +R+ V++N++++G++QN++H +A+ IF 
Sbjct: 252 RKDVVTWATMIDGYAKLGFVHQAKKLFDEM-PQRDVVAYNSMMAGYVQNKYHAEAIGIFN 310

Query: 445 LMTQEGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
            M +E     D +TL   LSA A L  L     IH   + + +     +G +LI  Y+KC
Sbjct: 311 DMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVALIDTYSKC 370

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
           G IQ +  +F++ +   +  WN++I G AI+G    A  +  ++    + PD +TFIGVL
Sbjct: 371 GSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSIKPDDITFIGVL 430

Query: 564 SACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPN 623
           +ACSH GLV  GL  FE M   + IEP ++HY CM+D+LSR+G ++ A  +++ M I+PN
Sbjct: 431 NACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCMVDILSRSGSIELAKNLIEEMPIEPN 490

Query: 624 AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVS 683
             IW T L AC  H+  + G +  + L        S + LLSNM+A  G W EV +VR +
Sbjct: 491 DVIWRTFLTACSNHKEFETGELVAKHLFLQGGYNPSSFVLLSNMYASFGMWKEVRRVRTT 550

Query: 684 MEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNT 723
           M+    +K PGCSWIE+   +H F         T E+ NT
Sbjct: 551 MKERKLRKIPGCSWIELDGNVHEFF------VDTMELSNT 584



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 136/468 (29%), Positives = 236/468 (50%), Gaps = 79/468 (16%)

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           DLF    +I  Y + G L  AR++FD +P + D+  +N+M+ GY K G    A++L D M
Sbjct: 127 DLFLQNCLIGLYLKCGCLGFARQVFDRMPQR-DSVSYNSMIDGYVKCGLIESARELFDLM 185

Query: 167 P--SKNIVSWNSMLSGYTKNGE-MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWK 223
           P   KN++SWN M+SGYT++ + +++ASK F+ M E+D++SWN ++DGYV+   ++ A  
Sbjct: 186 PREKKNLISWNCMISGYTQSEDGVNVASKLFDEMPEKDLISWNSLIDGYVKHRRIEDAKS 245

Query: 224 FFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEA 283
            F  +P ++VV+W TM+ GYA+ G + +A++LFD+MP R+VVA+N+M+A YVQ     EA
Sbjct: 246 LFDLMPRKDVVTWATMIDGYAKLGFVHQAKKLFDEMPQRDVVAYNSMMAGYVQNKYHAEA 305

Query: 284 ARLFIEMPERNPVS--WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKR 341
             +F +M + + +S   TT++     IA+L    + +D             I  Y+    
Sbjct: 306 IGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVD-------------IHLYI---- 348

Query: 342 MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQI 401
           MD   ++  K+G         +I  Y++CG + +++ +F ++ NK I  WN MI G A  
Sbjct: 349 MDNKFRLGGKLGV-------ALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLA-- 399

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
                                    I G  ++ F +      + + +   K D  T    
Sbjct: 400 -------------------------IHGLGESAFDM-----LLQIEKRSIKPDDITFIGV 429

Query: 462 LSACAH-------LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
           L+AC+H       L   +L R+ H +  K  +         ++ + ++ G I+ A+ L +
Sbjct: 430 LNACSHSGLVKEGLLCFELMRRKHKIEPKLQHY------GCMVDILSRSGSIELAKNLIE 483

Query: 515 D--ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
           +   +P DVI W + +   + N    E  +L  + +      +P +F+
Sbjct: 484 EMPIEPNDVI-WRTFLTACS-NHKEFETGELVAKHLFLQGGYNPSSFV 529



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/294 (34%), Positives = 164/294 (55%), Gaps = 13/294 (4%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F QN  I    K G +  A ++F +M Q+++V+YNSMI  Y K G +  AR+LF+ M
Sbjct: 126 SDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLM 185

Query: 73  P--QRNLVSWNSMIAGYLHN-DKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARE 129
           P  ++NL+SWN MI+GY  + D V  A +LFD+M   DL SW  +I  Y +   +E A+ 
Sbjct: 186 PREKKNLISWNCMISGYTQSEDGVNVASKLFDEMPEKDLISWNSLIDGYVKHRRIEDAKS 245

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           LFDL+P K D   W  M+ GYAK+G  ++AKKL D MP +++V++NSM++GY +N     
Sbjct: 246 LFDLMPRK-DVVTWATMIDGYAKLGFVHQAKKLFDEMPQRDVVAYNSMMAGYVQNKYHAE 304

Query: 190 ASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTML 240
           A   F  ME+      D  +  ++L    +L  L  A      I +          V ++
Sbjct: 305 AIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVALI 364

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
             Y++ G + ++ R+F+++  +++  WNAMI      G  E A  + +++ +R+
Sbjct: 365 DTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRS 418



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 118/390 (30%), Positives = 197/390 (50%), Gaps = 47/390 (12%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR--PD 107
           N +I  Y K G +  AR++F++MPQR+ VS+NSMI GY+    ++ ARELFD M R   +
Sbjct: 132 NCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMPREKKN 191

Query: 108 LFSWALMITCYTRKGE-LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           L SW  MI+ YT+  + +  A +LFD +P K D   WN+++ GY K     +AK L D M
Sbjct: 192 LISWNCMISGYTQSEDGVNVASKLFDEMPEK-DLISWNSLIDGYVKHRRIEDAKSLFDLM 250

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
           P K++V+W +M+ GY K G +H A K F+ M +RDVV++N M+ GYV+      A   F 
Sbjct: 251 PRKDVVTWATMIDGYAKLGFVHQAKKLFDEMPQRDVVAYNSMMAGYVQNKYHAEAIGIFN 310

Query: 227 KIPEQNVVS-----WVTMLSGYARNGRMLEA-----------RRLFDQMPIRNVVAWNAM 270
            + +++ +S      V +LS  A+ GR+ +A            RL  ++ +       A+
Sbjct: 311 DMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGV-------AL 363

Query: 271 IAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT 330
           I  Y + G I+++ R+F E+  ++   W  MI G       + A  +L Q+  ++I    
Sbjct: 364 IDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSIKPDD 423

Query: 331 AMI---------SGYVQN-----KRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
                       SG V+      + M   ++I  K+       +  M+   ++ G ++ A
Sbjct: 424 ITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQH-----YGCMVDILSRSGSIELA 478

Query: 377 INLFRQM-VNKDIVTWNTMIAGYAQIRQMD 405
            NL  +M +  + V W T +   +  ++ +
Sbjct: 479 KNLIEEMPIEPNDVIWRTFLTACSNHKEFE 508



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 174/330 (52%), Gaps = 32/330 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQM--SQKNTVTYNSMISAYAKN-GRVNDARKLFEQMPQR 75
           N  I    K G +E A ++F  M   +KN +++N MIS Y ++   VN A KLF++MP++
Sbjct: 163 NSMIDGYVKCGLIESARELFDLMPREKKNLISWNCMISGYTQSEDGVNVASKLFDEMPEK 222

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           +L+SWNS+I GY+ + ++++A+ LFD M R D+ +WA MI  Y + G + +A++LFD +P
Sbjct: 223 DLISWNSLIDGYVKHRRIEDAKSLFDLMPRKDVVTWATMIDGYAKLGFVHQAKKLFDEMP 282

Query: 136 NKEDTACWNAMVAGYAK-------IGNYNEAKKLLDAMPSKN----IVSWNSMLSGYTKN 184
            + D   +N+M+AGY +       IG +N+ +K     P +     ++S  + L   +K 
Sbjct: 283 QR-DVVAYNSMMAGYVQNKYHAEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKA 341

Query: 185 GEMHLASKFFEAMEERDVVSWNL---MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
            ++HL       M+ +  +   L   ++D Y +   +  + + F++I  +++  W  M+ 
Sbjct: 342 VDIHLY-----IMDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIG 396

Query: 242 GYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
           G A +G    A  +  Q+  R++    + +  ++ A    G ++E    F  M  ++ + 
Sbjct: 397 GLAIHGLGESAFDMLLQIEKRSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIE 456

Query: 298 -----WTTMIDGYVRIAKLDEARRLLDQMP 322
                +  M+D   R   ++ A+ L+++MP
Sbjct: 457 PKLQHYGCMVDILSRSGSIELAKNLIEEMP 486



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 66/128 (51%)

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482
           WNA+I  F       +AL +F LM +     D  +++  L AC+ L  +  G Q+H    
Sbjct: 61  WNAVIKSFSHGVDPRNALLLFCLMIENSVSVDKFSISLVLKACSRLGFVDFGMQVHGFLR 120

Query: 483 KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIK 542
           K+G  +DLF+ N LI +Y KCG +  A  +F      D +S+NS+I GY   G    A +
Sbjct: 121 KTGIYSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARE 180

Query: 543 LFEEMVME 550
           LF+ M  E
Sbjct: 181 LFDLMPRE 188


>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
          Length = 648

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 183/481 (38%), Positives = 275/481 (57%), Gaps = 11/481 (2%)

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
           +V   NA +  +  RG +  A RLF E P R+ VSW T+I GYVR     EA  L  ++ 
Sbjct: 155 DVFVVNAAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLA 214

Query: 323 YKNIAAQT------AMISGYVQNKRMDEANQIFDKIGTHDVVC----WNVMIKGYAQCGR 372
               A +         +SG  Q   ++   ++ + +    V C     N ++  Y +CG 
Sbjct: 215 EDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGS 274

Query: 373 MDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
           ++ A ++F ++ N+  V+W TMI G+A++  M+DA  +F+EM   R+   WNAL++G++Q
Sbjct: 275 LELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEM-PERDVFPWNALMAGYVQ 333

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
           N+   +A+ +F  M +     +  T+   LSAC+ L AL++G  +HH   +      + +
Sbjct: 334 NKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVAL 393

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
           G SL+ MYAKCG I+ A  +F +    + ++W S+I G A +G+A EAI+ F+ M+  G+
Sbjct: 394 GTSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRMIDLGL 453

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
            PD +TFIGVLSAC H GLV+ G + F  M   Y +E  ++HY+CMIDLL RAG LDEA 
Sbjct: 454 QPDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEAE 513

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672
           ++V  M + P+A +WG L  ACRMH NI LG  A  KL EL+P  +  Y LL+NM+AEA 
Sbjct: 514 QLVNAMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEAN 573

Query: 673 RWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
              + +KVRV M   G +K PGCS IE+   +H F+  D     T  I + L  +  Q+R
Sbjct: 574 MRKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHLDTNAIYDCLHEITLQMR 633

Query: 733 N 733
           +
Sbjct: 634 H 634



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 153/300 (51%), Gaps = 19/300 (6%)

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           F  D+F     +  ++ +G +  AR LFD  P + D   WN ++ GY + G   EA +L 
Sbjct: 152 FSADVFVVNAAMHFWSVRGPMAFARRLFDESPVR-DVVSWNTLIGGYVRSGLPREALELF 210

Query: 164 DAMPS------KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS----WNLMLDGYV 213
             +         + V+    +SG  + G++ L  +  E ++ + V       N ++D YV
Sbjct: 211 WRLAEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYV 270

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
           +   L+ A   F++I  +  VSW TM+ G+AR G M +AR LFD+MP R+V  WNA++A 
Sbjct: 271 KCGSLELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAG 330

Query: 274 YVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEA---RRLLDQMP-YKN 325
           YVQ  Q +EA  LF EM     + N ++   ++    ++  L+        +D+   + +
Sbjct: 331 YVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLS 390

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
           +A  T+++  Y +   + +A  +F++I   + + W  MI G A  G  DEAI  F++M++
Sbjct: 391 VALGTSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRMID 450



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 179/378 (47%), Gaps = 27/378 (7%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           +    N+ +  ++  G +  AR+LF++ P R++VSWN++I GY+ +   +EA ELF ++ 
Sbjct: 155 DVFVVNAAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLA 214

Query: 104 -----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGN 155
                 RPD  +    ++   + G+LE  + L + + NK         NA++  Y K G+
Sbjct: 215 EDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGS 274

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
              A  + + + ++  VSW +M+ G+ + G M  A   F+ M ERDV  WN ++ GYV+ 
Sbjct: 275 LELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQN 334

Query: 216 DDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRM---LEARRLFDQMPIRNVVAW- 267
                A   F ++ +  V    ++ V +LS  ++ G +   +      D+  +   VA  
Sbjct: 335 KQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALG 394

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA----RRLLDQMPY 323
            +++  Y + G I++A  +F E+P +N ++WT+MI G       DEA    +R++D    
Sbjct: 395 TSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQ 454

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIFDKIGT-----HDVVCWNVMIKGYAQCGRMDEAIN 378
            +      ++S       ++   Q F  +         +  ++ MI    + G +DEA  
Sbjct: 455 PDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEAEQ 514

Query: 379 LFRQM-VNKDIVTWNTMI 395
           L   M ++ D V W  + 
Sbjct: 515 LVNAMPMDPDAVVWGALF 532



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 172/353 (48%), Gaps = 29/353 (8%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K G +E A  +F ++S +  V++ +MI  +A+ G + DAR LF++MP+R++  WN+++AG
Sbjct: 271 KCGSLELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAG 330

Query: 87  YLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKA---RELFDLLPNKED 139
           Y+ N + KEA  LF +M +    P+  +   +++  ++ G LE         D       
Sbjct: 331 YVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLS 390

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM-- 197
            A   ++V  YAK GN  +A  + + +P +N ++W SM+ G   +G    A ++F+ M  
Sbjct: 391 VALGTSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRMID 450

Query: 198 --EERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-----EQNVVSWVTMLSGYARNGRML 250
              + D +++  +L        +++  +FF  +      E+ +  +  M+    R G + 
Sbjct: 451 LGLQPDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLD 510

Query: 251 EARRLFDQMPI-RNVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTTMIDGYV 306
           EA +L + MP+  + V W A+  A    G I   E+AA   +E+   +   +  + + Y 
Sbjct: 511 EAEQLVNAMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYA 570

Query: 307 RI---AKLDEARRLLDQMPYKNIAAQTAM-ISGY-----VQNKRMDEANQIFD 350
                 K D+ R ++  +  + +   + + ++G      V++K   + N I+D
Sbjct: 571 EANMRKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHLDTNAIYD 623



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 2/138 (1%)

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG 504
           L+     + DH T    + ACA L     G  +     K G+  D+FV N+ +  ++  G
Sbjct: 111 LLHSGSARPDHLTFPFLIKACARLQYRSYGAAVLGHVQKLGFSADVFVVNAAMHFWSVRG 170

Query: 505 RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG--VAPDPVTFIGV 562
            +  A  LF ++   DV+SWN+LI GY  +G   EA++LF  +  +G  V PD VT IG 
Sbjct: 171 PMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGA 230

Query: 563 LSACSHVGLVDGGLKLFE 580
           +S C+ +G ++ G +L E
Sbjct: 231 VSGCAQMGDLELGKRLHE 248


>gi|302812420|ref|XP_002987897.1| hypothetical protein SELMODRAFT_31384 [Selaginella moellendorffii]
 gi|300144286|gb|EFJ10971.1| hypothetical protein SELMODRAFT_31384 [Selaginella moellendorffii]
          Length = 581

 Score =  336 bits (861), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 202/608 (33%), Positives = 318/608 (52%), Gaps = 50/608 (8%)

Query: 81  NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
           N+++  Y     V EAR +FD + + + FSW ++ T Y   G L++A+ + D +P +   
Sbjct: 1   NTLMHSYGRCGCVDEARRVFDAIPQRNPFSWNILATAYIHNGFLQEAKRVLDRMP-QPSA 59

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF---FEAM 197
             WN M+A Y++ G   EA+ + D+MP  N ++WNS+LSGY   G  H  ++    F+ M
Sbjct: 60  VSWNLMLAAYSREGLTAEARAMFDSMPELNSMAWNSILSGYAHTG--HCVAEVLTVFQRM 117

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFD 257
              DV+SWN +L    E  D     + F  + ++ +VSW   +   AR G ++ AR +FD
Sbjct: 118 PGHDVISWNTLLLAISETGDAGGTKRVFDGMAQRTLVSWTCAMQANARTGDVVAARDVFD 177

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL 317
           +MP+R+VVAW AM+ AY Q   ++    LF  MP+R+  SW+ +I  Y       +A+  
Sbjct: 178 KMPLRDVVAWTAMLQAYAQ--DLDSLEALFRVMPQRDAASWSLVITAYGEGGDAWKAKHT 235

Query: 318 LDQMP--YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
            D MP   +N++   A+   Y+ N ++ EA  +  ++   DVV WN M+    Q G ++ 
Sbjct: 236 FDAMPGSSRNLSCWNALCHAYLYNGQLAEAGGVLHRMSKRDVVAWNGMLSCCVQRGEVET 295

Query: 376 AINLFRQ-MVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM-GKRRNTVSWNALISGF-LQ 432
           A  L R  +  +  V+W+T++ GYAQ R++DDA +IF  +    R+ VSW AL     L 
Sbjct: 296 AEALLRDTLPERSPVSWSTVVCGYAQSRKLDDAREIFHGLPASERDVVSWTALFHACALN 355

Query: 433 NEFHLDALKIFVLMTQEGK-----------KADHSTLACAL---SACAHLAALQLGRQIH 478
           N     AL  F  M  +             +A H+  A A+     C  + AL +   I 
Sbjct: 356 NRLDEAALVFFRDMPDKNHVSWNAMAAAYARAGHTAEAKAVLEQMPCHDVVALTV---IF 412

Query: 479 HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP-VDVISWNSLIAGYAINGNA 537
           HLA++SG                   R+++A  LF +  P  D+++WN++I  YA NG  
Sbjct: 413 HLAVQSG-------------------RLEHARSLFDNVVPEKDLVAWNAMIGAYAQNGQG 453

Query: 538 TEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYAC 597
            EA+ L+ EM ++G+ PD VT   +L+A S +G V+ G   F  M   + I P  EHYAC
Sbjct: 454 DEALLLYREMHIQGMDPDDVTMSSILAAHSRLGQVEQGRSHFVAMPMDHGITPSEEHYAC 513

Query: 598 MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK 657
           M+D L R+G+L  A E++      P+   WG+ L  CR++Q++  G  A +  + L+P K
Sbjct: 514 MVDALGRSGQLVAAEELLATFPFHPSYVAWGSFLAGCRINQDVARGERAAQIAAVLDPSK 573

Query: 658 TSCYALLS 665
            + Y LLS
Sbjct: 574 CAPYVLLS 581



 Score =  255 bits (651), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 159/557 (28%), Positives = 275/557 (49%), Gaps = 45/557 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +   G+ G V+EA ++F  + Q+N  ++N + +AY  NG + +A+++ ++MPQ + V
Sbjct: 1   NTLMHSYGRCGCVDEARRVFDAIPQRNPFSWNILATAYIHNGFLQEAKRVLDRMPQPSAV 60

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGE-LEKARELFDLLPNK 137
           SWN M+A Y       EAR +FD M   +  +W  +++ Y   G  + +   +F  +P  
Sbjct: 61  SWNLMLAAYSREGLTAEARAMFDSMPELNSMAWNSILSGYAHTGHCVAEVLTVFQRMPG- 119

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            D   WN ++   ++ G+    K++ D M  + +VSW   +    + G++  A   F+ M
Sbjct: 120 HDVISWNTLLLAISETGDAGGTKRVFDGMAQRTLVSWTCAMQANARTGDVVAARDVFDKM 179

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFD 257
             RDVV+W  ML  Y +  DLDS    F+ +P+++  SW  +++ Y   G   +A+  FD
Sbjct: 180 PLRDVVAWTAMLQAYAQ--DLDSLEALFRVMPQRDAASWSLVITAYGEGGDAWKAKHTFD 237

Query: 258 QMP---------------------------------IRNVVAWNAMIAAYVQRGQIEEAA 284
            MP                                  R+VVAWN M++  VQRG++E A 
Sbjct: 238 AMPGSSRNLSCWNALCHAYLYNGQLAEAGGVLHRMSKRDVVAWNGMLSCCVQRGEVETAE 297

Query: 285 RLFIE-MPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY--KNIAAQTAMISGYVQNKR 341
            L  + +PER+PVSW+T++ GY +  KLD+AR +   +P   +++ + TA+      N R
Sbjct: 298 ALLRDTLPERSPVSWSTVVCGYAQSRKLDDAREIFHGLPASERDVVSWTALFHACALNNR 357

Query: 342 MDEANQIFDK-IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQ 400
           +DEA  +F + +   + V WN M   YA+ G   EA  +  QM   D+V    +     Q
Sbjct: 358 LDEAALVFFRDMPDKNHVSWNAMAAAYARAGHTAEAKAVLEQMPCHDVVALTVIFHLAVQ 417

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
             +++ A  +F+ +   ++ V+WNA+I  + QN    +AL ++  M  +G   D  T++ 
Sbjct: 418 SGRLEHARSLFDNVVPEKDLVAWNAMIGAYAQNGQGDEALLLYREMHIQGMDPDDVTMSS 477

Query: 461 ALSACAHLAALQLGRQIHHLAIK--SGYVNDLFVGNSLITMYAKCGRIQNA-ELLFKDAD 517
            L+A + L  ++ GR  H +A+    G          ++    + G++  A ELL     
Sbjct: 478 ILAAHSRLGQVEQGRS-HFVAMPMDHGITPSEEHYACMVDALGRSGQLVAAEELLATFPF 536

Query: 518 PVDVISWNSLIAGYAIN 534
               ++W S +AG  IN
Sbjct: 537 HPSYVAWGSFLAGCRIN 553



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 131/439 (29%), Positives = 226/439 (51%), Gaps = 17/439 (3%)

Query: 11  KGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFE 70
            G  V + N  +  + ++G      ++F  M+Q+  V++   + A A+ G V  AR +F+
Sbjct: 118 PGHDVISWNTLLLAISETGDAGGTKRVFDGMAQRTLVSWTCAMQANARTGDVVAARDVFD 177

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
           +MP R++V+W +M+  Y  +    EA  LF  M + D  SW+L+IT Y   G+  KA+  
Sbjct: 178 KMPLRDVVAWTAMLQAYAQDLDSLEA--LFRVMPQRDAASWSLVITAYGEGGDAWKAKHT 235

Query: 131 FDLLP-NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           FD +P +  + +CWNA+   Y   G   EA  +L  M  +++V+WN MLS   + GE+  
Sbjct: 236 FDAMPGSSRNLSCWNALCHAYLYNGQLAEAGGVLHRMSKRDVVAWNGMLSCCVQRGEVET 295

Query: 190 ASKFF-EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP--EQNVVSWVTMLSGYARN 246
           A     + + ER  VSW+ ++ GY +   LD A + F  +P  E++VVSW  +    A N
Sbjct: 296 AEALLRDTLPERSPVSWSTVVCGYAQSRKLDDAREIFHGLPASERDVVSWTALFHACALN 355

Query: 247 GRMLEARRL-FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGY 305
            R+ EA  + F  MP +N V+WNAM AAY + G   EA  +  +MP  + V+ T +    
Sbjct: 356 NRLDEAALVFFRDMPDKNHVSWNAMAAAYARAGHTAEAKAVLEQMPCHDVVALTVIFHLA 415

Query: 306 VRIAKLDEARRLLDQ-MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH----DVVCW 360
           V+  +L+ AR L D  +P K++ A  AMI  Y QN + DEA  ++ ++       D V  
Sbjct: 416 VQSGRLEHARSLFDNVVPEKDLVAWNAMIGAYAQNGQGDEALLLYREMHIQGMDPDDVTM 475

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVT-----WNTMIAGYAQIRQMDDAVKIFEEMG 415
           + ++  +++ G++++  + F  M     +T     +  M+    +  Q+  A ++     
Sbjct: 476 SSILAAHSRLGQVEQGRSHFVAMPMDHGITPSEEHYACMVDALGRSGQLVAAEELLATFP 535

Query: 416 KRRNTVSWNALISGFLQNE 434
              + V+W + ++G   N+
Sbjct: 536 FHPSYVAWGSFLAGCRINQ 554


>gi|218190515|gb|EEC72942.1| hypothetical protein OsI_06806 [Oryza sativa Indica Group]
          Length = 1030

 Score =  336 bits (861), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 224/783 (28%), Positives = 391/783 (49%), Gaps = 83/783 (10%)

Query: 26  GKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLF---------EQMPQRN 76
           G+ G + +A  +F +MS  + V  N +I+A ++ G  ND   LF         E MP   
Sbjct: 140 GRIGSLADAHTVFDEMSCSDAVCRNILITASSRAGLYNDVFHLFRAMLASGVDESMPTAV 199

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKG---ELEKARE 129
            V+    +   L    ++  R +   + +     D  S   +++ Y + G    ++ A  
Sbjct: 200 TVAVVLPVCAKLR--VLRAGRSIHGYVIKTGLEFDTLSGNALVSMYAKCGGSIAMDDAHL 257

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEA----------------KKLLDAMPSKNIVS 173
            F  +  K D   WN+++AGY++ G + EA                  L + +P  ++V 
Sbjct: 258 AFSTICCK-DVVSWNSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLPFCSLVE 316

Query: 174 W------------------------NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML 209
           +                        N++++ Y+K  EM      F + +  D+V+WN ++
Sbjct: 317 YGRHYGKEIHGFVVRHGLEMDISVSNALMAHYSKVCEMRAVESIFRSSKMGDIVTWNTVI 376

Query: 210 DGYVELDDLDSAWKFFQKI------PEQNVVSWVTMLSGYARNGRMLEARRLFDQM---P 260
            GYV       A K FQ +      P+   VS +++L+  A+ G +    R+   +   P
Sbjct: 377 AGYVMNRYPSRALKLFQGLLFAGMAPDS--VSLISLLTACAQVGNLRVGIRVHGYIFRHP 434

Query: 261 --IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAK-LDEARRL 317
             ++     NA+++ Y Q  + + A R FI +  ++ VSW  ++         +++  RL
Sbjct: 435 ELLQETSLMNALVSFYSQCDRFDAAFRSFITIQNKDSVSWNAILSACANSEHHIEQFFRL 494

Query: 318 LDQMPYKNIAAQTAMI------SGYVQNKRMDEANQIFDKIG-THDVVCWNVMIKGYAQC 370
           L +M +      +  I      S +   K + E++    ++G T D    N ++  YA+C
Sbjct: 495 LGEMWHDVTQWDSVTILNIIRMSTFCGIKMVQESHGYSLRVGYTGDSSVANAILDAYAKC 554

Query: 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
           G + +A  LFR +  ++IVT NTMI+ Y +   ++DA   F  M ++ +  +WN +   +
Sbjct: 555 GYLHDAETLFRSLAGRNIVTGNTMISCYLKNNCVEDAEMTFNHMAEK-DLTTWNLMSRLY 613

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
            QN+    A  +F  +  EG   D  ++   LSAC HL+++QL +Q H   +++  + D+
Sbjct: 614 AQNDLCDQAFCLFHQLQSEGLNPDTISITNILSACIHLSSVQLVKQCHGYMLRAS-LEDI 672

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME 550
            +  +L+  Y+KCG I NA  LF+ +   D++ + ++I  YA++G A +A++LF +M+  
Sbjct: 673 HLEGALLDAYSKCGNIANAYNLFQVSLHKDLVIFTAMIGAYAMHGMAEKAVELFSKMLTL 732

Query: 551 GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDE 610
            + PD V    +LSACSH GLVD G+K+F+ + E+Y +EP  EH ACM+DLL+R+GRL +
Sbjct: 733 DIKPDHVVLTALLSACSHAGLVDAGIKIFKSIREIYGVEPTEEHCACMVDLLARSGRLQD 792

Query: 611 AFEMVKGMKIK-PNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHA 669
           A+     M     NA  WG+LLGAC++H  +K+G++A ++L  +E +    Y ++SN+ A
Sbjct: 793 AYSFALDMPPHVVNANAWGSLLGACKVHGEVKIGQLAADRLFSMEAEDIGNYVIMSNIFA 852

Query: 670 EAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAA 729
              +W+ VE VR  M+    +K  GCSWIEV+   H F++ D +      I + L +L  
Sbjct: 853 ADDKWESVEHVRKLMKSKDMKKPAGCSWIEVEKTRHLFVASDVQHQDRFSIYDVLGSLYQ 912

Query: 730 QIR 732
           QIR
Sbjct: 913 QIR 915



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 164/393 (41%), Gaps = 73/393 (18%)

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM-----PERNPVS 297
           Y R G + +A  +FD+M   + V  N +I A  + G   +   LF  M      E  P +
Sbjct: 139 YGRIGSLADAHTVFDEMSCSDAVCRNILITASSRAGLYNDVFHLFRAMLASGVDESMPTA 198

Query: 298 WTTM-----------------IDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340
            T                   I GYV    L+      D +    + +  A   G +   
Sbjct: 199 VTVAVVLPVCAKLRVLRAGRSIHGYVIKTGLE-----FDTLSGNALVSMYAKCGGSIA-- 251

Query: 341 RMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK-------------- 386
            MD+A+  F  I   DVV WN +I GY++ G  +EA+ LF QM+++              
Sbjct: 252 -MDDAHLAFSTICCKDVVSWNSIIAGYSENGLFEEALALFGQMISEECLPNYSTLANVLP 310

Query: 387 --------------------------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
                                     DI   N ++A Y+++ +M     IF    K  + 
Sbjct: 311 FCSLVEYGRHYGKEIHGFVVRHGLEMDISVSNALMAHYSKVCEMRAVESIFRS-SKMGDI 369

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
           V+WN +I+G++ N +   ALK+F  +   G   D  +L   L+ACA +  L++G ++H  
Sbjct: 370 VTWNTVIAGYVMNRYPSRALKLFQGLLFAGMAPDSVSLISLLTACAQVGNLRVGIRVHGY 429

Query: 481 AIKSG-YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATE 539
             +    + +  + N+L++ Y++C R   A   F      D +SWN++++  A + +  E
Sbjct: 430 IFRHPELLQETSLMNALVSFYSQCDRFDAAFRSFITIQNKDSVSWNAILSACANSEHHIE 489

Query: 540 A-IKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
              +L  EM  +    D VT + ++   +  G+
Sbjct: 490 QFFRLLGEMWHDVTQWDSVTILNIIRMSTFCGI 522



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 117/295 (39%), Gaps = 48/295 (16%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G  +   N  I+   K+  VE+A   F+ M++K+  T+N M   YA+N   + A  LF Q
Sbjct: 569 GRNIVTGNTMISCYLKNNCVEDAEMTFNHMAEKDLTTWNLMSRLYAQNDLCDQAFCLFHQ 628

Query: 72  MPQRNL----VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKA 127
           +    L    +S  ++++  +H   V+  ++    M R  L                   
Sbjct: 629 LQSEGLNPDTISITNILSACIHLSSVQLVKQCHGYMLRASL------------------- 669

Query: 128 RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
                     ED     A++  Y+K GN   A  L      K++V + +M+  Y  +G  
Sbjct: 670 ----------EDIHLEGALLDAYSKCGNIANAYNLFQVSLHKDLVIFTAMIGAYAMHGMA 719

Query: 188 HLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVT 238
             A + F  M   D+    V    +L        +D+  K F+ I E   V         
Sbjct: 720 EKAVELFSKMLTLDIKPDHVVLTALLSACSHAGLVDAGIKIFKSIREIYGVEPTEEHCAC 779

Query: 239 MLSGYARNGRMLEARRLFDQMP--IRNVVAWNAMIAAYVQRGQIE----EAARLF 287
           M+   AR+GR+ +A      MP  + N  AW +++ A    G+++     A RLF
Sbjct: 780 MVDLLARSGRLQDAYSFALDMPPHVVNANAWGSLLGACKVHGEVKIGQLAADRLF 834



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 7/147 (4%)

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHL----AALQLGRQIHHLAIKSGYVNDLF 491
           H     +   M   G + +   LA A+ + + L        LGR +H LA+K GY +   
Sbjct: 71  HYGCTSLLRWMLARGLRPNRLALAAAVKSSSALPDCRGGAALGRCLHGLAVKVGYADGAV 130

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
           V  +++ MY + G + +A  +F +    D +  N LI   +  G   +   LF  M+  G
Sbjct: 131 VAKAVMDMYGRIGSLADAHTVFDEMSCSDAVCRNILITASSRAGLYNDVFHLFRAMLASG 190

Query: 552 V---APDPVTFIGVLSACSHVGLVDGG 575
           V    P  VT   VL  C+ + ++  G
Sbjct: 191 VDESMPTAVTVAVVLPVCAKLRVLRAG 217


>gi|357464861|ref|XP_003602712.1| hypothetical protein MTR_3g098230 [Medicago truncatula]
 gi|355491760|gb|AES72963.1| hypothetical protein MTR_3g098230 [Medicago truncatula]
          Length = 867

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 221/794 (27%), Positives = 392/794 (49%), Gaps = 112/794 (14%)

Query: 47  VTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVK-EARELFDKMFR 105
           VT  ++++ YAK G ++D  KLF+Q  + + V WN +++GY  + K   +  ++F  M  
Sbjct: 73  VTSKALLNMYAKCGMLDDCHKLFDQFGRCDPVIWNIVLSGYSRSGKNDADVMKVFRAMHS 132

Query: 106 -----PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYN 157
                P   + A ++    R G L   + +   +     + DT   NA+V+ YAK G   
Sbjct: 133 SGEVMPSSVTIATVLPVCARSGNLNGGKSVHGYVIKSGFEMDTFAGNALVSMYAKCGLVA 192

Query: 158 -EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE----------------- 199
            +A  + D++  K++VSWN+M++G  +NG +  A   F  M +                 
Sbjct: 193 CDAYAVFDSIIHKDVVSWNAMIAGLAENGLLKEAFSLFSLMMKGSVKPNYATVANILPVC 252

Query: 200 --------------------------RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV 233
                                      DV   N +L  Y+++     A   F  +  +++
Sbjct: 253 ASFDENIAHRCGRQIHSYVLQWPELSADVSVCNALLSFYLKVGRTKEAESLFWAMDARDL 312

Query: 234 VSWVTMLSGYARNGRMLEARRLF-----------DQMPIRNVV----------------- 265
           VSW T+++GYA NG  L++  +F           D + + +++                 
Sbjct: 313 VSWNTIIAGYALNGEWLKSLHVFGNLVSLEMLLLDSVTMVSILPACAQLDNLQAGKQVHA 372

Query: 266 -------------AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLD 312
                        A NA+++ Y + G IEEA   F  +  ++ +SW +++D +       
Sbjct: 373 YILRHPFLFEDTSAGNALVSFYAKCGYIEEAYHTFSMISRKDLISWNSILDAFGEKRHHS 432

Query: 313 EARRLLDQMPYKNIAAQTAMI-------SGYVQNKRMDEANQIFDKIGTHDVVC------ 359
               LL  M   +I   +  I       +  ++ K++ E +    + G+  ++C      
Sbjct: 433 RFLSLLHVMLKLDIRPDSVTILTIIHFCASLLRVKKVKEIHGYSIRSGS--LLCATAPTV 490

Query: 360 WNVMIKGYAQCGRMDEAINLFRQMVNK-DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRR 418
            N ++  Y++CG ++ A  +F+ +  K ++VT N++I+GY  +    DA  IF  M +  
Sbjct: 491 GNAILDAYSKCGNIEYANKMFQNLSEKRNLVTCNSLISGYVGLGSHYDANMIFSGMSETD 550

Query: 419 NTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIH 478
            T +WN ++  + +N+    AL++F+ +  +G K D  T+   +  C  +A++ L RQ H
Sbjct: 551 LT-TWNLMVRVYAENDCPEQALELFLKLQTQGMKPDVVTIMSLIPVCTQMASVHLLRQCH 609

Query: 479 HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNAT 538
              I+S +  DL +  +L+  YAKCG I  A  +F+ +   D++ + ++I GYA++G + 
Sbjct: 610 GYIIRSSF-EDLHLKGTLLDAYAKCGIIGYAYKIFQSSVDKDLVMFTAMIGGYAMHGMSE 668

Query: 539 EAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACM 598
           +A++ F  M+  G+ PD V F  +LSACSH G +  GLK+F+ + +++ ++P +E +AC+
Sbjct: 669 KALETFSHMLNMGIKPDHVIFTSILSACSHAGRIAEGLKIFDSIEKIHGMKPTIEQFACV 728

Query: 599 IDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKT 658
           +DLL+R G + EA+  V  + I+ NA IWGTLLGAC+ +  ++LGRI  +KL ++E    
Sbjct: 729 VDLLARGGHVSEAYSFVTKIPIEANANIWGTLLGACKTYHEVELGRIVADKLFKIEANDI 788

Query: 659 SCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTA 718
             Y +LSN++A   RWD V +VR  M     +K  GCSWIEV+   + F+ GD    +  
Sbjct: 789 GNYIVLSNLYAADDRWDGVMEVRKMMRNKDLKKPAGCSWIEVERTNNIFVVGDCSHPQRN 848

Query: 719 EICNTLKTLAAQIR 732
            I +TL TL  Q++
Sbjct: 849 LIYSTLCTLDQQVK 862



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 136/313 (43%), Gaps = 51/313 (16%)

Query: 421 VSWNALISGFLQNEFHLDALKIF--VLMTQEGKKADHSTLACALSACAHLAALQLGRQIH 478
           ++W + I     +  H +AL  F   L      K DH  LA  L +C+ L A  LG+ +H
Sbjct: 1   MTWASTIRSLCVDSRHNEALSFFHHCLKDSAAFKPDHEVLAAILKSCSALLASNLGKCLH 60

Query: 479 HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING-NA 537
              +K G+V+      +L+ MYAKCG + +   LF      D + WN +++GY+ +G N 
Sbjct: 61  SYVVKQGHVSCHVTSKALLNMYAKCGMLDDCHKLFDQFGRCDPVIWNIVLSGYSRSGKND 120

Query: 538 TEAIKLFEEMVMEG-VAPDPVTFIGVLSACSHVGLVDGGLKL--------FECMTEVYAI 588
            + +K+F  M   G V P  VT   VL  C+  G ++GG  +        FE   + +A 
Sbjct: 121 ADVMKVFRAMHSSGEVMPSSVTIATVLPVCARSGNLNGGKSVHGYVIKSGFE--MDTFAG 178

Query: 589 EPLVEHYA-------------------------CMIDLLSRAGRLDEAFE----MVKGMK 619
             LV  YA                          MI  L+  G L EAF     M+KG  
Sbjct: 179 NALVSMYAKCGLVACDAYAVFDSIIHKDVVSWNAMIAGLAENGLLKEAFSLFSLMMKG-S 237

Query: 620 IKPNAGIWGTLLGAC-RMHQNI--KLGR---IAVEKLSELEPQKTSCYALLSNMHAEAGR 673
           +KPN      +L  C    +NI  + GR     V +  EL    + C ALLS  + + GR
Sbjct: 238 VKPNYATVANILPVCASFDENIAHRCGRQIHSYVLQWPELSADVSVCNALLS-FYLKVGR 296

Query: 674 WDEVEKVRVSMEG 686
             E E +  +M+ 
Sbjct: 297 TKEAESLFWAMDA 309


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 183/484 (37%), Positives = 276/484 (57%), Gaps = 30/484 (6%)

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWTTMIDGYVRIAKLD 312
           +F Q+   N   W AMI  Y  +G + E+   +  M      PVS+T         A   
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFS-------ALFK 150

Query: 313 EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGR 372
                L+    K + AQT +I G+                   D+   N MI  Y +CG 
Sbjct: 151 ACGAALNMDLGKQVHAQTILIGGFAS-----------------DLYVGNSMIDLYVKCGF 193

Query: 373 MDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
           +  A  +F +M  +D+V+W  +I  YA+   M+ A  +F+++   ++ V+W A+++G+ Q
Sbjct: 194 LGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDL-PSKDMVAWTAMVTGYAQ 252

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY--VNDL 490
           N    +AL+ F  M   G + D  TLA  +SACA L A++    I  +A +SG+    ++
Sbjct: 253 NGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNV 312

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME 550
            VG++LI MY+KCG    A  +F+     +V S++S+I GYA++G A  A++LF +M+  
Sbjct: 313 VVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKT 372

Query: 551 GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDE 610
            + P+ VTFIG+LSACSH GLV+ G +LF  M + + + P  +HYACM+DLL RAG L+E
Sbjct: 373 EIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEE 432

Query: 611 AFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAE 670
           A ++VK M ++PN G+WG LLGACR+H N  + +IA  +L +LEP     Y LLSN++A 
Sbjct: 433 ALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYAS 492

Query: 671 AGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKN-QIHTFLSGDPKQCRTAEICNTLKTLAA 729
           AGRW+EV K+R  +   G +K PGCSW E KN +IH F +GD    R++EI   LK L  
Sbjct: 493 AGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIE 552

Query: 730 QIRN 733
           ++R+
Sbjct: 553 RLRS 556



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 184/408 (45%), Gaps = 68/408 (16%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHN------ 90
           +F Q++  N   + +MI  YA  G ++++   + +M +R+ V   S     L        
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRM-RRDGVGPVSFTFSALFKACGAAL 156

Query: 91  ----DKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
                K   A+ +    F  DL+    MI  Y + G L  AR++FD + ++ D   W  +
Sbjct: 157 NMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEM-SERDVVSWTEL 215

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE------- 199
           +  YAK G+   A  L D +PSK++V+W +M++GY +NG    A ++F+ M++       
Sbjct: 216 IVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDE 275

Query: 200 ----------------------RD------------VVSWNLMLDGYVELDDLDSAWKFF 225
                                 RD            VV  + ++D Y +    D A+K F
Sbjct: 276 VTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVF 335

Query: 226 QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM---PIR-NVVAWNAMIAAYVQRGQIE 281
           + + E+NV S+ +M+ GYA +GR   A +LF  M    IR N V +  +++A    G +E
Sbjct: 336 EVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVE 395

Query: 282 EAARLFIEMPE-----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISG 335
           +  +LF +M +      +P  +  M+D   R   L+EA  L+  MP + N     A++  
Sbjct: 396 QGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGA 455

Query: 336 YVQNKRMD----EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
              +   D     AN++F K+  + +  + ++   YA  GR +E   L
Sbjct: 456 CRIHGNPDIAQIAANELF-KLEPNGIGNYILLSNIYASAGRWEEVSKL 502



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 164/358 (45%), Gaps = 31/358 (8%)

Query: 99  LFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKED---------TACWNAMVAG 149
           +F ++  P+ F W  MI  Y  +G L ++   +  +  + D         +A + A  A 
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRM--RRDGVGPVSFTFSALFKACGAA 155

Query: 150 Y-AKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLM 208
               +G    A+ +L    + ++   NSM+  Y K G +  A K F+ M ERDVVSW  +
Sbjct: 156 LNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTEL 215

Query: 209 LDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF----------DQ 258
           +  Y +  D++SA   F  +P +++V+W  M++GYA+NGR  EA   F          D+
Sbjct: 216 IVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDE 275

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
           + +  V++  A + A      I + A      P  N V  + +ID Y +    DEA ++ 
Sbjct: 276 VTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVF 335

Query: 319 DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV----VCWNVMIKGYAQCGRMD 374
           + M  +N+ + ++MI GY  + R   A Q+F  +   ++    V +  ++   +  G ++
Sbjct: 336 EVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVE 395

Query: 375 EAINLFRQM-----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
           +   LF +M     V      +  M+    +   +++A+ + + M    N   W AL+
Sbjct: 396 QGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALL 453



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 149/316 (47%), Gaps = 43/316 (13%)

Query: 8   IGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARK 67
           IG   S ++  N  I    K G +  A K+F +MS+++ V++  +I AYAK G +  A  
Sbjct: 171 IGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASG 230

Query: 68  LFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGE 123
           LF+ +P +++V+W +M+ GY  N + KEA E F KM       D  + A +I+   + G 
Sbjct: 231 LFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGA 290

Query: 124 LEKARELFDL-----LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSML 178
           ++ A  + D+          +    +A++  Y+K G+ +EA K+ + M  +N+ S++SM+
Sbjct: 291 VKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMI 350

Query: 179 SGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
            GY  +G  H A + F  M + ++                             N V+++ 
Sbjct: 351 LGYAMHGRAHSALQLFHDMLKTEI---------------------------RPNKVTFIG 383

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVA-----WNAMIAAYVQRGQIEEAARLFIEMP-E 292
           +LS  +  G + + R+LF +M     VA     +  M+    + G +EEA  L   MP E
Sbjct: 384 ILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPME 443

Query: 293 RNPVSWTTMIDGYVRI 308
            N   W  ++ G  RI
Sbjct: 444 PNGGVWGALL-GACRI 458



 Score = 46.2 bits (108), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 16/143 (11%)

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE--LLFKDADPVDVISWNSLIAGYA 532
           +Q+H   I++G     +V   LI M  K      +   L+F   +  +   W ++I GYA
Sbjct: 59  KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYA 118

Query: 533 INGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLV 592
           + G  +E+   +  M  +GV P   TF  +  AC     +D G        +V+A   L+
Sbjct: 119 LQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLG-------KQVHAQTILI 171

Query: 593 EHYA-------CMIDLLSRAGRL 608
             +A        MIDL  + G L
Sbjct: 172 GGFASDLYVGNSMIDLYVKCGFL 194


>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 652

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 185/481 (38%), Positives = 274/481 (56%), Gaps = 10/481 (2%)

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA-----RRL 317
           +V   NA +        + EA +LF     R+ VSW T+I GYVR     EA     R +
Sbjct: 154 DVFVVNAAMHFLAVCSSMAEARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMV 213

Query: 318 LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC----WNVMIKGYAQCGRM 373
            D     +      ++SG  Q + ++   ++   + +H V C     NV++  Y +CG +
Sbjct: 214 GDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDL 273

Query: 374 DEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433
           + A ++F  +  K IV+W TMI GYAQ   MDDA K+F+EM   R+   WNAL++G++Q 
Sbjct: 274 ERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVFDEM-PERDVFPWNALMTGYVQC 332

Query: 434 EFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG 493
           +   +AL++F  M +   + D  T+   LSAC+ L AL++G  +HH   +      + +G
Sbjct: 333 KRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLG 392

Query: 494 NSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA 553
            +L+ MY+KCG I+ A  +FK+    + ++W ++I+G A +G+A  AIK F+ M+  G+ 
Sbjct: 393 TNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQ 452

Query: 554 PDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFE 613
           PD +TFIGVLSAC H GLV  G + F  M   Y +E  ++HY+CM+DLL RAG LDEA  
Sbjct: 453 PDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEH 512

Query: 614 MVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGR 673
           +V  M ++P+A +WG L  ACRMH NI LG  A  KL EL+P  +  Y LL+NM+AEA  
Sbjct: 513 LVNTMPMEPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPGDSGIYVLLANMYAEANM 572

Query: 674 WDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
             + +KVRV M   G +K PGCS IE+   +H F+  D      A I + L  +  QI +
Sbjct: 573 RKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHTDIAAIYDCLHEITLQIEH 632

Query: 734 T 734
           T
Sbjct: 633 T 633



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 172/386 (44%), Gaps = 28/386 (7%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           + S     +    N+ +   A    + +ARKLF+    R+LVSWN++I GY+     +EA
Sbjct: 146 VLSLGFHADVFVVNAAMHFLAVCSSMAEARKLFDGSHVRDLVSWNTLIGGYVRRGVPREA 205

Query: 97  RELF-----DKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVA 148
            E+F     D    PD  +   +++   +  +LE  R L   + +   +      N ++ 
Sbjct: 206 LEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVESHGVRCTVRLMNVVMD 265

Query: 149 GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLM 208
            Y K G+   AK + + +  K IVSW +M+ GY + G M  A K F+ M ERDV  WN +
Sbjct: 266 MYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNAL 325

Query: 209 LDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFDQMPIRNV 264
           + GYV+      A + F  + E  V    ++ V +LS  ++ G  LE          R  
Sbjct: 326 MTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLG-ALEMGMWVHHYIDRRR 384

Query: 265 VAWNAMIAA-----YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLD 319
           V+ + M+       Y + G IE+A R+F E+PE+N ++WT MI G       D A +   
Sbjct: 385 VSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQ 444

Query: 320 QMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIGT-----HDVVCWNVMIKGYAQC 370
           +M    +         ++S       + E  + F  + +       +  ++ M+    + 
Sbjct: 445 RMIELGLQPDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRA 504

Query: 371 GRMDEAINLFRQM-VNKDIVTWNTMI 395
           G +DEA +L   M +  D V W  + 
Sbjct: 505 GYLDEAEHLVNTMPMEPDAVVWGALF 530



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 141/286 (49%), Gaps = 17/286 (5%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K G +E A  +F  + +K  V++ +MI  YA+ G ++DARK+F++MP+R++  WN+++ G
Sbjct: 269 KCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTG 328

Query: 87  YLHNDKVKEARELF----DKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE---D 139
           Y+   + KEA  LF    + M  PD  +   +++  ++ G LE    +   +  +     
Sbjct: 329 YVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLS 388

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE 199
                 +V  Y+K GN  +A ++   +P KN ++W +M+SG   +G   +A K+F+ M E
Sbjct: 389 VMLGTNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIE 448

Query: 200 ----RDVVSWNLMLDGYVELDDLDSAWKFFQKIP-----EQNVVSWVTMLSGYARNGRML 250
                D +++  +L        +    +FF  +      E+ +  +  M+    R G + 
Sbjct: 449 LGLQPDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLD 508

Query: 251 EARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
           EA  L + MP+  + V W A+  A    G I    +  +++ E +P
Sbjct: 509 EAEHLVNTMPMEPDAVVWGALFFACRMHGNITLGEKAAMKLVELDP 554



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 169/414 (40%), Gaps = 91/414 (21%)

Query: 105 RPDLFSWALMITCYTRKGELEKARELFD---LLPNKEDTACWNAMVAGYAKIGNYNEAKK 161
           RPD  ++  ++    R  E      +      L    D    NA +   A   +  EA+K
Sbjct: 117 RPDHLTFPFLLKACARLQERNYGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEARK 176

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNG------------------------------------ 185
           L D    +++VSWN+++ GY + G                                    
Sbjct: 177 LFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLR 236

Query: 186 EMHLASKFFEAMEERDVVS----WNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
           ++ L  +    +E   V       N+++D Y++  DL+ A   F+ I ++ +VSW TM+ 
Sbjct: 237 DLELGRRLHGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIV 296

Query: 242 GYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE--------- 292
           GYA+ G M +AR++FD+MP R+V  WNA++  YVQ  + +EA RLF +M E         
Sbjct: 297 GYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDIT 356

Query: 293 -------------------------RNPVSWTTM-----IDGYVRIAKLDEARRLLDQMP 322
                                    R  VS + M     +D Y +   +++A R+  ++P
Sbjct: 357 MVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIP 416

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDK---IGTH-DVVCWNVMIKGYAQCGRMDEAIN 378
            KN    TAMISG   +   D A + F +   +G   D + +  ++      G + E   
Sbjct: 417 EKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSACCHAGLVKEGQE 476

Query: 379 LFRQMVNK-----DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
            F  MV+K      +  ++ M+    +   +D+A  +   M    + V W AL 
Sbjct: 477 FFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTMPMEPDAVVWGALF 530



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 89/181 (49%), Gaps = 3/181 (1%)

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL 511
           + DH T    L ACA L     G  +    +  G+  D+FV N+ +   A C  +  A  
Sbjct: 117 RPDHLTFPFLLKACARLQERNYGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEARK 176

Query: 512 LFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG-VAPDPVTFIGVLSACSHVG 570
           LF  +   D++SWN+LI GY   G   EA+++F  MV +G V PD VT IGV+S  + + 
Sbjct: 177 LFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLR 236

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
            ++ G +L     E + +   V     ++D+  + G L+ A  + +G+  K     W T+
Sbjct: 237 DLELGRRL-HGYVESHGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVS-WTTM 294

Query: 631 L 631
           +
Sbjct: 295 I 295


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 198/619 (31%), Positives = 327/619 (52%), Gaps = 38/619 (6%)

Query: 122 GELEKARELFDLLP-NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG 180
           G L  AR LFD +P  + +   WN++++ +AK G   +A+ +   MP ++ VSW  M+ G
Sbjct: 79  GGLRDARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVG 138

Query: 181 YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI------------ 228
             + G    A K    M           L   +    +  A    +K+            
Sbjct: 139 LNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSC 198

Query: 229 -PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF 287
            P  N V     L+ Y + G    A  +F++MP+R+V +WNAM++     G+++ A  LF
Sbjct: 199 VPVANSV-----LNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLF 253

Query: 288 IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ-----TAMISGYVQNKRM 342
             MP+R+ VSW  MI GY +     +A +L  +M +++  A      T+++S       +
Sbjct: 254 ESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNV 313

Query: 343 DEANQIFDKI----GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD--IVTWNTMIA 396
               Q+   I      ++    N +I  YA+ G ++ A  +  Q +  D  ++++  ++ 
Sbjct: 314 RIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLE 373

Query: 397 GYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHS 456
           GY +I  M+ A ++F  M  R + V+W A+I G+ QN  + +A+ +F  M   G + +  
Sbjct: 374 GYVKIGDMESAREMFGVMNNR-DVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSY 432

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
           TLA  LS CA LA L  G+QIH  AI+S       V N++ITMYA+ G    A  +F   
Sbjct: 433 TLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMF--- 489

Query: 517 DPV----DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
           D V    + I+W S+I   A +G   EA+ LFEEM+  GV PD +T++GVLSACSH G V
Sbjct: 490 DQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFV 549

Query: 573 DGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLG 632
           + G + ++ +   + I P + HYACM+DLL+RAG   EA E ++ M ++P+A  WG+LL 
Sbjct: 550 NEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLS 609

Query: 633 ACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQ 692
           ACR+H+N +L  +A EKL  ++P  +  Y+ ++N+++  GRW +  ++  + +    +K+
Sbjct: 610 ACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKE 669

Query: 693 PGCSWIEVKNQIHTFLSGD 711
            G SW  ++++IH F + D
Sbjct: 670 TGFSWTHIRSKIHVFGADD 688



 Score =  202 bits (514), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 154/552 (27%), Positives = 280/552 (50%), Gaps = 50/552 (9%)

Query: 26  GKSGRVEEAIKIFSQ--MSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSM 83
           G +G + +A ++F +  ++++N  T+NS++S +AK+GR+ DAR +F +MP+R+ VSW  M
Sbjct: 76  GGAGGLRDARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVM 135

Query: 84  IAGYLHNDKVKEA-RELFDKM---FRPDLFSWA-LMITC-YTRKGELEKARELFDLLPNK 137
           + G     +  EA + L D     F P  F+   ++ +C  T+ G +   R++   +   
Sbjct: 136 VVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAV--GRKVHSFVVKL 193

Query: 138 EDTAC---WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
              +C    N+++  Y K G+   A  + + MP +++ SWN+M+S  T  G M LA   F
Sbjct: 194 GLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLF 253

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDS-AWKFFQKI-------PEQNVVSWVTMLS---GY 243
           E+M +R +VSWN M+ GY + + LD+ A K F ++       P++  ++ V       G 
Sbjct: 254 ESMPDRSIVSWNAMIAGYNQ-NGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGN 312

Query: 244 ARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER--NPVSWTTM 301
            R G+ + A  L  +M   + V  NA+I+ Y + G +E A R+  +  E   N +S+T +
Sbjct: 313 VRIGKQVHAYILRTEMAYNSQVT-NALISTYAKSGSVENARRIMDQSMETDLNVISFTAL 371

Query: 302 IDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHD----- 356
           ++GYV+I  ++ AR +   M  +++ A TAMI GY QN R DEA  +F  + T       
Sbjct: 372 LEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNS 431

Query: 357 -------VVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVK 409
                   VC ++    Y +           R ++ +     N +I  YA+      A +
Sbjct: 432 YTLAAVLSVCASLACLDYGK----QIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARR 487

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           +F+++  R+ T++W ++I    Q+    +A+ +F  M + G + D  T    LSAC+H  
Sbjct: 488 MFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAG 547

Query: 470 ALQLGRQIHHLAIKSGY--VNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWN 525
            +  G++ ++  IK+ +    ++     ++ + A+ G    A+   +   PV  D I+W 
Sbjct: 548 FVNEGKR-YYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRM-PVEPDAIAWG 605

Query: 526 SLIAGYAINGNA 537
           SL++   ++ NA
Sbjct: 606 SLLSACRVHKNA 617



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 123/443 (27%), Positives = 205/443 (46%), Gaps = 85/443 (19%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS V   N  +   GK G  E A  +F +M  ++  ++N+M+S     GR++ A  LFE 
Sbjct: 196 GSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFES 255

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEK 126
           MP R++VSWN+MIAGY  N    +A +LF +M       PD F+   +++     G +  
Sbjct: 256 MPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRI 315

Query: 127 ARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLD-AMPSK-NIVSWNSMLSGY 181
            +++   +   E   ++   NA+++ YAK G+   A++++D +M +  N++S+ ++L GY
Sbjct: 316 GKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGY 375

Query: 182 TKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWV 237
            K G+M  A + F  M  RDVV+W  M+ GY +    D A   F+ +    PE N  +  
Sbjct: 376 VKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLA 435

Query: 238 TMLS-----------------------------------GYARNGRMLEARRLFDQMPIR 262
            +LS                                    YAR+G    ARR+FDQ+  R
Sbjct: 436 AVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWR 495

Query: 263 N-VVAWNAMIAAYVQRGQIEEAARLFIEM------PERNPVSWTTMIDGYVRIAKLDEAR 315
              + W +MI A  Q GQ EEA  LF EM      P+R  +++  ++        ++E +
Sbjct: 496 KETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDR--ITYVGVLSACSHAGFVNEGK 553

Query: 316 RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
           R  DQ                ++N+     +QI  ++ +H    +  M+   A+ G   E
Sbjct: 554 RYYDQ----------------IKNE-----HQIAPEM-SH----YACMVDLLARAGLFSE 587

Query: 376 AINLFRQM-VNKDIVTWNTMIAG 397
           A    R+M V  D + W ++++ 
Sbjct: 588 AQEFIRRMPVEPDAIAWGSLLSA 610



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 94/237 (39%), Gaps = 49/237 (20%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYV---------------------------------- 487
           L  C   A    GR IH  A+K+G +                                  
Sbjct: 33  LQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIP 92

Query: 488 ---NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLF 544
               ++F  NSL++M+AK GR+ +A  +F +    D +SW  ++ G    G   EAIK  
Sbjct: 93  LARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTL 152

Query: 545 EEMVMEGVAPDPVTFIGVLSAC--SHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLL 602
            +M  +G  P   T   VLS+C  +  G V   +  F     + +  P+      ++++ 
Sbjct: 153 LDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANS---VLNMY 209

Query: 603 SRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAV-EKLSELEPQKT 658
            + G  + A  + + M ++ +   W  ++       N  LGR+ + E L E  P ++
Sbjct: 210 GKCGDSETATTVFERMPVR-SVSSWNAMVSL-----NTHLGRMDLAESLFESMPDRS 260


>gi|357457743|ref|XP_003599152.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488200|gb|AES69403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 225/749 (30%), Positives = 364/749 (48%), Gaps = 62/749 (8%)

Query: 45   NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
            N     S++  Y  +G V++A KLFE++ + N+VSW S++  Y  N   KE   ++  + 
Sbjct: 283  NVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLR 342

Query: 105  RPDLF----SWALMI-TCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYN-- 157
               L     + A +I TC     +    + L D++ +  DT+  +   +  +  GNY+  
Sbjct: 343  HNGLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSV 402

Query: 158  -EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGY 212
             EA ++ + M  ++ +SWNS+++    NG    +   F  M     + D ++ + +L   
Sbjct: 403  EEASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHPKTDYITISALLPAC 462

Query: 213  VELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN 268
                 L         I     E NV    ++LS YA+ G   +A  +F  MP R++++WN
Sbjct: 463  GSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMPARDLISWN 522

Query: 269  AMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMP-Y 323
            +M+A++V+ G+   A  L +EM +     N V++TT +     + KL      +     +
Sbjct: 523  SMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSACYNLEKLKIVHAFVIHFAVH 582

Query: 324  KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMD---EAINLF 380
             N+     +++ Y +   MDEA ++   +   DVV WN +I G+A     +   +A NL 
Sbjct: 583  HNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDVVTWNALIGGHADDKDPNATIQAFNLM 642

Query: 381  RQ---------MVNK----------------------------DIVTWNTMIAGYAQIRQ 403
            R+         +VN                             D    +++I  YAQ   
Sbjct: 643  RREGLLSNYITIVNLLGTCMSPDYLLKHGMPIHAHIVVAGFELDTYVQSSLITMYAQCGD 702

Query: 404  MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS 463
            ++ +  IF+ +  + N+ +WNA+ S         +ALK    M  +G   D  + + AL+
Sbjct: 703  LNTSSYIFDVLANK-NSSTWNAIFSANAHYGPGEEALKFIARMRNDGVDLDQFSFSVALA 761

Query: 464  ACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
               +L  L  G+Q+H   IK G+  D +V N+ + MY KCG I +   +          S
Sbjct: 762  TIGNLTVLDEGQQLHSWIIKLGFELDEYVLNATMDMYGKCGEIDDVFRILPIPKIRSKRS 821

Query: 524  WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMT 583
            WN LI+  A +G   +A + F EM+  G+ PD VTF+ +LSACSH GLVD GL  F  MT
Sbjct: 822  WNILISALARHGFFRQATEAFHEMLDLGLKPDHVTFVSLLSACSHGGLVDEGLVYFSSMT 881

Query: 584  EVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLG 643
              + +   +EH  C+IDLL R+GRL EA   +  M + PN  +W +LL AC++H N++LG
Sbjct: 882  SEFGVPTAIEHCVCIIDLLGRSGRLAEAEGFIDKMPVPPNEFVWRSLLAACKVHGNLELG 941

Query: 644  RIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQ 703
            R A ++L EL     S Y L SN+ A   RW +VE VR  ME    +K+P CSWI++KN+
Sbjct: 942  RKAADRLFELNSSDDSAYVLYSNVCASTQRWGDVENVRKQMESQSLKKKPACSWIKLKNK 1001

Query: 704  IHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            + TF  GD    ++A+I   L+ L    R
Sbjct: 1002 VMTFGMGDQFHPQSAQIYAKLEELRKMTR 1030



 Score =  198 bits (504), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 168/710 (23%), Positives = 316/710 (44%), Gaps = 80/710 (11%)

Query: 26  GKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIA 85
           G  G+   A+ +   + Q+NT   N++++ Y+K G +  A+ +F++M  RN  SWN+MI+
Sbjct: 163 GNVGKALHALCV-KDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNMIS 221

Query: 86  GYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGEL-EKARELFDLLPN---K 137
           G++      +A + F  MF     P  +  A M+T   R G + E AR++   +      
Sbjct: 222 GFVRVGWYHKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMTEGARQIHGYVVKCGLM 281

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            +     +++  Y   G+ +EA KL + +   NIVSW S++  Y  NG        +  +
Sbjct: 282 SNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHL 341

Query: 198 EERDVV-SWNLMLD-------------GYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGY 243
               ++ + N M               GY  L D+  +      +   N  S ++M   Y
Sbjct: 342 RHNGLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVAN--SLISMFGNY 399

Query: 244 ARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWT 299
                + EA R+F+ M  R+ ++WN++I A    G+ EE+   F  M    P+ + ++ +
Sbjct: 400 ---DSVEEASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHPKTDYITIS 456

Query: 300 TMIDGYVRIAKLDEARRLLDQMPY----KNIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
            ++        L   R L   +       N+    +++S Y Q    ++A  +F  +   
Sbjct: 457 ALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMPAR 516

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQM-------------------------------- 383
           D++ WN M+  + + G+   AI L  +M                                
Sbjct: 517 DLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSACYNLEKLKIVHAFV 576

Query: 384 ----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDA 439
               V+ +++  NT++  Y +   MD+A K+ + M   R+ V+WNALI G   ++     
Sbjct: 577 IHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIM-PERDVVTWNALIGGHADDKDPNAT 635

Query: 440 LKIFVLMTQEGKKADHSTLACALSAC-AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
           ++ F LM +EG  +++ T+   L  C +    L+ G  IH   + +G+  D +V +SLIT
Sbjct: 636 IQAFNLMRREGLLSNYITIVNLLGTCMSPDYLLKHGMPIHAHIVVAGFELDTYVQSSLIT 695

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           MYA+CG +  +  +F      +  +WN++ +  A  G   EA+K    M  +GV  D  +
Sbjct: 696 MYAQCGDLNTSSYIFDVLANKNSSTWNAIFSANAHYGPGEEALKFIARMRNDGVDLDQFS 755

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEV-YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKG 617
           F   L+   ++ ++D G +L   + ++ + ++  V      +D+  + G +D+ F ++  
Sbjct: 756 FSVALATIGNLTVLDEGQQLHSWIIKLGFELDEYV--LNATMDMYGKCGEIDDVFRILPI 813

Query: 618 MKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSE--LEPQKTSCYALLS 665
            KI+     W  L+ A   H   +    A  ++ +  L+P   +  +LLS
Sbjct: 814 PKIRSKRS-WNILISALARHGFFRQATEAFHEMLDLGLKPDHVTFVSLLS 862



 Score =  105 bits (263), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 165/366 (45%), Gaps = 53/366 (14%)

Query: 365 KGYAQC--GRMDEAINLF--RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
           KG+++   G + +A++    + ++ ++    NT++  Y++   +  A  +F++M   RN 
Sbjct: 155 KGFSEISEGNVGKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKM-YDRND 213

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG-RQIHH 479
            SWN +ISGF++  ++  A++ F  M + G       +A  ++AC     +  G RQIH 
Sbjct: 214 ASWNNMISGFVRVGWYHKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMTEGARQIHG 273

Query: 480 LAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATE 539
             +K G ++++FVG SL+  Y   G +  A  LF++ +  +++SW SL+  YA NG+  E
Sbjct: 274 YVVKCGLMSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKE 333

Query: 540 AIKLFEEMVMEGVAPDPVTFIGVLSACSHVG-----------LVDGGL------------ 576
            + ++  +   G+     T   V+  C   G           ++  GL            
Sbjct: 334 VLNIYRHLRHNGLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLI 393

Query: 577 -------------KLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA---FEMVKGMKI 620
                        ++F  M E   I      +  +I   +  GR +E+   F  ++    
Sbjct: 394 SMFGNYDSVEEASRVFNNMQERDTIS-----WNSIITASAHNGRFEESLGHFFWMRRTHP 448

Query: 621 KPNAGIWGTLLGACRMHQNIKLGR--IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVE 678
           K +      LL AC   Q++K GR    +   S LE     C +LLS M+A+AG  ++ E
Sbjct: 449 KTDYITISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLS-MYAQAGSSEDAE 507

Query: 679 KVRVSM 684
            V  +M
Sbjct: 508 LVFHTM 513


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  335 bits (860), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 211/694 (30%), Positives = 358/694 (51%), Gaps = 70/694 (10%)

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKL 162
           PDL ++++++    R    +  + +   L       D+   N +++ Y+K G+   A+ +
Sbjct: 24  PDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLI 83

Query: 163 LDAMPSK-NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE-LDDLDS 220
            + M +K ++VSW++M+S +  N     A   F  M E             +    + + 
Sbjct: 84  FEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANY 143

Query: 221 AW------KFFQKIP--EQNVVSWVTMLSGYAR-NGRMLEARRLFDQMPIRNVVAWNAMI 271
           AW       F  K    E +V     ++  + + +G +  A ++FD+MP RN+V W  MI
Sbjct: 144 AWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMI 203

Query: 272 AAYVQRGQIEEAARLFIEM------PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
             + Q G   +A  LF++M      P+R   ++++++     +  L   ++L  ++    
Sbjct: 204 TRFAQLGCARDAIDLFLDMELSGYVPDR--FTYSSVLSACTELGLLALGKQLHSRVIRLG 261

Query: 326 IAAQTA-------MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMD-EAI 377
           +A           M +    +  +D++ ++F+++  H+V+ W  +I  Y Q G  D EAI
Sbjct: 262 LALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAI 321

Query: 378 NLFRQMVNKDI---------------------------------------VTWNTMIAGY 398
            LF +M++  I                                          N++I+ Y
Sbjct: 322 ELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMY 381

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           A+  +M+DA K F+ + ++ N VS+NA++ G+ +N    +A  +F  +   G      T 
Sbjct: 382 ARSGRMEDARKAFDILFEK-NLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTF 440

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
           A  LS  A + A+  G QIH   +K GY ++  + N+LI+MY++CG I+ A  +F + + 
Sbjct: 441 ASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMED 500

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
            +VISW S+I G+A +G AT A+++F +M+  G  P+ +T++ VLSACSHVG++  G K 
Sbjct: 501 RNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKH 560

Query: 579 FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQ 638
           F  M + + I P +EHYACM+DLL R+G L EA E +  M +  +A +W TLLGACR+H 
Sbjct: 561 FNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHG 620

Query: 639 NIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWI 698
           N +LGR A E + E EP   + Y LLSN+HA AG+W +V K+R SM+     K+ GCSWI
Sbjct: 621 NTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWI 680

Query: 699 EVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           EV+N++H F  G+    +  +I   L  LA++I+
Sbjct: 681 EVENRVHRFHVGETSHPQAWQIYQELDQLASKIK 714



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 142/588 (24%), Positives = 275/588 (46%), Gaps = 75/588 (12%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMP-QRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
           ++V  N++IS Y+K G    AR +FE M  +R+LVSW++M++ + +N    +A   F  M
Sbjct: 60  DSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDM 119

Query: 104 ----FRPDLFSWALMITCYTRKGELEKARELFDLLPN----KEDTACWNAMVAGYAK-IG 154
               F P+ + +A +I   +          ++  +      + D      ++  + K  G
Sbjct: 120 LELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSG 179

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLD 210
           +   A K+ D MP +N+V+W  M++ + + G    A   F  ME      D  +++ +L 
Sbjct: 180 DLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLS 239

Query: 211 GYVELDDLDSAWKFFQKIPEQNV-------VSWVTMLSGYARNGRMLEARRLFDQMPIRN 263
              EL  L    +   ++    +        S V M +  A +G + ++R++F+QMP  N
Sbjct: 240 ACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHN 299

Query: 264 VVAWNAMIAAYVQRGQIE-EAARLFIEMPE----RNPVSWT------------------- 299
           V++W A+I AYVQ G+ + EA  LF +M       N  S++                   
Sbjct: 300 VMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY 359

Query: 300 ----------------TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMD 343
                           ++I  Y R  ++++AR+  D +  KN+ +  A++ GY +N + +
Sbjct: 360 SYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSE 419

Query: 344 EANQIFDKIGTHDV----VCWNVMIKGYAQCGRMDEAINLFRQMV----NKDIVTWNTMI 395
           EA  +F++I    +      +  ++ G A  G M +   +  +++      +    N +I
Sbjct: 420 EAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALI 479

Query: 396 AGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADH 455
           + Y++   ++ A ++F EM + RN +SW ++I+GF ++ F   AL++F  M + G K + 
Sbjct: 480 SMYSRCGNIEAAFQVFNEM-EDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNE 538

Query: 456 STLACALSACAHLAALQLG-RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
            T    LSAC+H+  +  G +  + +  + G V  +     ++ +  + G +  A + F 
Sbjct: 539 ITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEA-MEFI 597

Query: 515 DADPV--DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
           ++ P+  D + W +L+    ++GN TE  +   EM++E    DP  +I
Sbjct: 598 NSMPLMADALVWRTLLGACRVHGN-TELGRHAAEMILEQEPDDPAAYI 644



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 115/441 (26%), Positives = 199/441 (45%), Gaps = 76/441 (17%)

Query: 28  SGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV----SWNSM 83
           SG +  A K+F +M ++N VT+  MI+ +A+ G   DA  LF  M     V    +++S+
Sbjct: 178 SGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSV 237

Query: 84  IAG-----------YLH---------------------------NDKVKEARELFDKMFR 105
           ++             LH                           +  V ++R++F++M  
Sbjct: 238 LSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPE 297

Query: 106 PDLFSWALMITCYTRKGELEK-ARELF------DLLPNKED-----TACWNAMVAGYAKI 153
            ++ SW  +IT Y + GE +K A ELF       + PN         AC N +   Y   
Sbjct: 298 HNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGN-LSDPYTGE 356

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV 213
             Y+ A KL   + S N V  NS++S Y ++G M  A K F+ + E+++VS+N ++DGY 
Sbjct: 357 QVYSYAVKL--GIASVNCVG-NSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYA 413

Query: 214 ELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEAR----RLFDQMPIRNVV 265
           +    + A+  F +I +  +     ++ ++LSG A  G M +      RL       N  
Sbjct: 414 KNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQC 473

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVR----IAKLDEARRLLDQM 321
             NA+I+ Y + G IE A ++F EM +RN +SWT+MI G+ +       L+   ++L+  
Sbjct: 474 ICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETG 533

Query: 322 PYKNIAAQTAMISGYVQNKRMDEANQIFDKI-GTHDVVC----WNVMIKGYAQCGRMDEA 376
              N     A++S       + E  + F+ +   H +V     +  M+    + G + EA
Sbjct: 534 TKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEA 593

Query: 377 INLFRQM-VNKDIVTWNTMIA 396
           +     M +  D + W T++ 
Sbjct: 594 MEFINSMPLMADALVWRTLLG 614



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 148/297 (49%), Gaps = 20/297 (6%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL- 108
           NS+IS YA++GR+ DARK F+ + ++NLVS+N+++ GY  N K +EA  LF+++    + 
Sbjct: 375 NSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIG 434

Query: 109 ---FSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL 162
              F++A +++     G + K  ++   L     K +    NA+++ Y++ GN   A ++
Sbjct: 435 ISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQV 494

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDL 218
            + M  +N++SW SM++G+ K+G    A + F  M E       +++  +L     +  +
Sbjct: 495 FNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMI 554

Query: 219 DSAWKFFQKI-PEQNVVS----WVTMLSGYARNGRMLEARRLFDQMPI-RNVVAWNAMIA 272
               K F  +  E  +V     +  M+    R+G ++EA    + MP+  + + W  ++ 
Sbjct: 555 SEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLG 614

Query: 273 AYVQRGQIE---EAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
           A    G  E    AA + +E    +P ++  + + +    +  +  ++   M  +N+
Sbjct: 615 ACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNL 671



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 94/182 (51%), Gaps = 2/182 (1%)

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
           A     LMTQ+    D +T +  L +C      QLG+ +H   ++SG   D  V N+LI+
Sbjct: 10  AFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLIS 69

Query: 499 MYAKCGRIQNAELLFKD-ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
           +Y+KCG  + A L+F+   +  D++SW+++++ +A N    +AI  F +M+  G  P+  
Sbjct: 70  LYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEY 129

Query: 558 TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSR-AGRLDEAFEMVK 616
            F  V+ ACS+      G  ++  + +   +E  V     +ID+  + +G L  A+++  
Sbjct: 130 CFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFD 189

Query: 617 GM 618
            M
Sbjct: 190 KM 191



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 101/215 (46%), Gaps = 23/215 (10%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           + N    N++IS Y++ G +  A ++F +M  RN++SW SMI G+  +     A E+F K
Sbjct: 469 KSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHK 528

Query: 103 MF----RPDLFSWALMITCYTRKGELEKARELFD-------LLPNKEDTACWNAMVAGYA 151
           M     +P+  ++  +++  +  G + + ++ F+       ++P  E  AC   MV    
Sbjct: 529 MLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYAC---MVDLLG 585

Query: 152 KIGNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNGEMHL---ASKFFEAMEERDVVSWNL 207
           + G   EA + +++MP   + + W ++L     +G   L   A++     E  D  ++ L
Sbjct: 586 RSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYIL 645

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVV-----SWV 237
           + + +          K  + + E+N++     SW+
Sbjct: 646 LSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWI 680


>gi|15241714|ref|NP_198751.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171567|sp|Q9FLZ9.1|PP405_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g39350
 gi|10177683|dbj|BAB11009.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007040|gb|AED94423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 677

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 205/627 (32%), Positives = 326/627 (51%), Gaps = 88/627 (14%)

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML 209
           YA  G+   A+KL + MP  +++S+N ++  Y + G  H A   F  M    V     + 
Sbjct: 59  YALCGHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGV---KCVP 115

Query: 210 DGYV---------ELDDLDSAWKFFQKIPEQNVVSWV--------TMLSGYARNGRMLEA 252
           DGY          EL  +        +I    + SW          +L+ Y   G++  A
Sbjct: 116 DGYTYPFVAKAAGELKSMKLGLVVHGRI----LRSWFGRDKYVQNALLAMYMNFGKVEMA 171

Query: 253 RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF-------IEMPERNPVSWTTMIDGY 305
           R +FD M  R+V++WN MI+ Y + G + +A  +F       +++     VS    + G+
Sbjct: 172 RDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLP-VCGH 230

Query: 306 VR-------IAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV 358
           ++       + KL E +RL D++  KN     A+++ Y++  RMDEA  +FD++   DV+
Sbjct: 231 LKDLEMGRNVHKLVEEKRLGDKIEVKN-----ALVNMYLKCGRMDEARFVFDRMERRDVI 285

Query: 359 CWNVMIKGYAQCGRMDEAINL--------------------------------------- 379
            W  MI GY + G ++ A+ L                                       
Sbjct: 286 TWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWA 345

Query: 380 FRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDA 439
            RQ V  DI+   ++I+ YA+ +++D   ++F    K  +T  W+A+I+G +QNE   DA
Sbjct: 346 VRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKY-HTGPWSAIIAGCVQNELVSDA 404

Query: 440 LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
           L +F  M +E  + + +TL   L A A LA L+    IH    K+G+++ L     L+ +
Sbjct: 405 LGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHV 464

Query: 500 YAKCGRIQNAELLF----KDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555
           Y+KCG +++A  +F    +     DV+ W +LI+GY ++G+   A+++F EMV  GV P+
Sbjct: 465 YSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPN 524

Query: 556 PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV 615
            +TF   L+ACSH GLV+ GL LF  M E Y       HY C++DLL RAGRLDEA+ ++
Sbjct: 525 EITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLI 584

Query: 616 KGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWD 675
             +  +P + +WG LL AC  H+N++LG +A  KL ELEP+ T  Y LL+N++A  GRW 
Sbjct: 585 TTIPFEPTSTVWGALLAACVTHENVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWK 644

Query: 676 EVEKVRVSMEGSGAQKQPGCSWIEVKN 702
           ++EKVR  ME  G +K+PG S IE+++
Sbjct: 645 DMEKVRSMMENVGLRKKPGHSTIEIRS 671



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 149/571 (26%), Positives = 260/571 (45%), Gaps = 87/571 (15%)

Query: 55  AYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR------PDL 108
            YA  G +  ARKLFE+MPQ +L+S+N +I  Y+      +A  +F +M        PD 
Sbjct: 58  TYALCGHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDG 117

Query: 109 FSWALMITCYTRKGELEKARELFDLLPNK-------EDTACWNAMVAGYAKIGNYNEAKK 161
           +++  +       GEL K+ +L  ++  +        D    NA++A Y   G    A+ 
Sbjct: 118 YTYPFVAKA---AGEL-KSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARD 173

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDD 217
           + D M +++++SWN+M+SGY +NG M+ A   F+ M    V     +   ML     L D
Sbjct: 174 VFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKD 233

Query: 218 LDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
           L+      + + E+ +   +     +++ Y + GRM EAR +FD+M  R+V+ W  MI  
Sbjct: 234 LEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMING 293

Query: 274 YVQRGQIEEAARLF----IEMPERNPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKN 325
           Y + G +E A  L      E    N V+  +++       K+++ + L    + Q  Y +
Sbjct: 294 YTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYSD 353

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-- 383
           I  +T++IS Y + KR+D   ++F     +    W+ +I G  Q   + +A+ LF++M  
Sbjct: 354 IIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRR 413

Query: 384 --VNKDIVTWNTMIAGY---AQIRQ--------------------------------MDD 406
             V  +I T N+++  Y   A +RQ                                ++ 
Sbjct: 414 EDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLES 473

Query: 407 AVKIF---EEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS 463
           A KIF   +E  K ++ V W ALISG+  +    +AL++F+ M + G   +  T   AL+
Sbjct: 474 AHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALN 533

Query: 464 ACAHLAALQLGRQIHHLAIKSGYVNDLFVGN---SLITMYAKCGRIQNAELLFKDA--DP 518
           AC+H   ++ G  +    ++  +   L   N    ++ +  + GR+  A  L      +P
Sbjct: 534 ACSHSGLVEEGLTLFRFMLE--HYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEP 591

Query: 519 VDVISWNSLIAGYAINGNA----TEAIKLFE 545
              + W +L+A    + N       A KLFE
Sbjct: 592 TSTV-WGALLAACVTHENVQLGEMAANKLFE 621



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 184/380 (48%), Gaps = 19/380 (5%)

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV 358
           +T+   Y     +  AR+L ++MP  ++ +   +I  YV+     +A  +F ++ +  V 
Sbjct: 53  STLSVTYALCGHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVK 112

Query: 359 C------WNVMIKGYAQCGRMDEAI----NLFRQMVNKDIVTWNTMIAGYAQIRQMDDAV 408
           C      +  + K   +   M   +     + R    +D    N ++A Y    +++ A 
Sbjct: 113 CVPDGYTYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMAR 172

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
            +F+ M K R+ +SWN +ISG+ +N +  DAL +F  M  E    DH+T+   L  C HL
Sbjct: 173 DVFDVM-KNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHL 231

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
             L++GR +H L  +    + + V N+L+ MY KCGR+  A  +F   +  DVI+W  +I
Sbjct: 232 KDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMI 291

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG--LKLFECMTEVY 586
            GY  +G+   A++L   M  EGV P+ VT   ++S C     V+ G  L  +    +VY
Sbjct: 292 NGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVY 351

Query: 587 AIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIK--LGR 644
           + + ++E    +I + ++  R+D  F +  G   K + G W  ++  C  ++ +   LG 
Sbjct: 352 S-DIIIE--TSLISMYAKCKRVDLCFRVFSGAS-KYHTGPWSAIIAGCVQNELVSDALGL 407

Query: 645 IAVEKLSELEPQKTSCYALL 664
               +  ++EP   +  +LL
Sbjct: 408 FKRMRREDVEPNIATLNSLL 427



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/452 (24%), Positives = 213/452 (47%), Gaps = 54/452 (11%)

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------- 290
           T+   YA  G +  AR+LF++MP  +++++N +I  YV+ G   +A  +FI M       
Sbjct: 54  TLSVTYALCGHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKC 113

Query: 291 -PERNPVSWTTMIDGYVRIAKLDEA--RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347
            P+     +     G ++  KL      R+L     ++   Q A+++ Y+   +++ A  
Sbjct: 114 VPDGYTYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARD 173

Query: 348 IFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD-------------------- 387
           +FD +   DV+ WN MI GY + G M++A+ +F  MVN+                     
Sbjct: 174 VFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKD 233

Query: 388 -------------------IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
                              I   N ++  Y +  +MD+A  +F+ M +RR+ ++W  +I+
Sbjct: 234 LEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRM-ERRDVITWTCMIN 292

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
           G+ ++    +AL++  LM  EG + +  T+A  +S C     +  G+ +H  A++    +
Sbjct: 293 GYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYS 352

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           D+ +  SLI+MYAKC R+     +F  A       W+++IAG   N   ++A+ LF+ M 
Sbjct: 353 DIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMR 412

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
            E V P+  T   +L A + +  +   + +   +T+   +  L +    ++ + S+ G L
Sbjct: 413 REDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSL-DAATGLVHVYSKCGTL 471

Query: 609 DEAFEMVKGMKIKPNAG---IWGTLLGACRMH 637
           + A ++  G++ K  +    +WG L+    MH
Sbjct: 472 ESAHKIFNGIQEKHKSKDVVLWGALISGYGMH 503



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 121/509 (23%), Positives = 229/509 (44%), Gaps = 86/509 (16%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ-------------- 74
           G +  A K+F +M Q + ++YN +I  Y + G  +DA  +F +M                
Sbjct: 63  GHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPF 122

Query: 75  -------------------RNLVSW--------NSMIAGYLHNDKVKEARELFDKMFRPD 107
                              R L SW        N+++A Y++  KV+ AR++FD M   D
Sbjct: 123 VAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRD 182

Query: 108 LFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAM--VAGYAK-------IGN 155
           + SW  MI+ Y R G +  A  +FD + N+    D A   +M  V G+ K       +  
Sbjct: 183 VISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHK 242

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
             E K+L D +  K     N++++ Y K G M  A   F+ ME RDV++W  M++GY E 
Sbjct: 243 LVEEKRLGDKIEVK-----NALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTED 297

Query: 216 DDLDSAWKF-----FQKI-PEQNVVSWVTMLSGYA---RNGRMLEARRLFDQMPIRNVVA 266
            D+++A +      F+ + P    ++ +  + G A    +G+ L    +  Q+   +++ 
Sbjct: 298 GDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQV-YSDIII 356

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK-- 324
             ++I+ Y +  +++   R+F    + +   W+ +I G V+   + +A  L  +M  +  
Sbjct: 357 ETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRREDV 416

Query: 325 --NIAAQTAMISGYVQNKRMDEANQI---FDKIG-THDVVCWNVMIKGYAQCGRMDEAIN 378
             NIA   +++  Y     + +A  I     K G    +     ++  Y++CG ++ A  
Sbjct: 417 EPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHK 476

Query: 379 LF----RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALISGFL 431
           +F     +  +KD+V W  +I+GY       +A+++F EM   G   N +++ + ++   
Sbjct: 477 IFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACS 536

Query: 432 QNEFHLDALKIFVLMTQEGK---KADHST 457
            +    + L +F  M +  K   +++H T
Sbjct: 537 HSGLVEEGLTLFRFMLEHYKTLARSNHYT 565



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 120/504 (23%), Positives = 228/504 (45%), Gaps = 55/504 (10%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP--- 106
           N++++ Y   G+V  AR +F+ M  R+++SWN+MI+GY  N  + +A  +FD M      
Sbjct: 156 NALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVD 215

Query: 107 -DLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKL 162
            D  +   M+       +LE  R +  L+  K   +     NA+V  Y K G  +EA+ +
Sbjct: 216 LDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFV 275

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL--DDLD- 219
            D M  +++++W  M++GYT++G++  A +    M+   V    + +   V +  D L  
Sbjct: 276 FDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKV 335

Query: 220 ------SAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
                   W   Q++   +++   +++S YA+  R+    R+F      +   W+A+IA 
Sbjct: 336 NDGKCLHGWAVRQQV-YSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAG 394

Query: 274 YVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRL---LDQMPY-KN 325
            VQ   + +A  LF  M     E N  +  +++  Y  +A L +A  +   L +  +  +
Sbjct: 395 CVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSS 454

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKI----GTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
           + A T ++  Y +   ++ A++IF+ I     + DVV W  +I GY   G    A+ +F 
Sbjct: 455 LDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFM 514

Query: 382 QMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN---ALISGFLQNE 434
           +MV   +    +T+ + +   +    +++ + +F  M +   T++ +     I   L   
Sbjct: 515 EMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVDLLGRA 574

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLF--- 491
             LD  + + L+T    +   +     L+AC     +QLG             N LF   
Sbjct: 575 GRLD--EAYNLITTIPFEPTSTVWGALLAACVTHENVQLGEMA---------ANKLFELE 623

Query: 492 ---VGNSLI--TMYAKCGRIQNAE 510
               GN ++   +YA  GR ++ E
Sbjct: 624 PENTGNYVLLANIYAALGRWKDME 647



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 102/446 (22%), Positives = 181/446 (40%), Gaps = 100/446 (22%)

Query: 5   LKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND 64
           L+S   +  YV  QN  +      G+VE A  +F  M  ++ +++N+MIS Y +NG +ND
Sbjct: 144 LRSWFGRDKYV--QNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMND 201

Query: 65  ARKLFEQM-------PQRNLVSW--------------------------------NSMIA 85
           A  +F+ M           +VS                                 N+++ 
Sbjct: 202 ALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVN 261

Query: 86  GYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL------PNK-- 137
            YL   ++ EAR +FD+M R D+ +W  MI  YT  G++E A EL  L+      PN   
Sbjct: 262 MYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVT 321

Query: 138 --------------EDTAC---W-------------NAMVAGYAKIGNYNEAKKLLDAMP 167
                          D  C   W              ++++ YAK    +   ++     
Sbjct: 322 IASLVSVCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGAS 381

Query: 168 SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWK 223
             +   W+++++G  +N  +  A   F+ M   DV     + N +L  Y  L DL  A  
Sbjct: 382 KYHTGPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMN 441

Query: 224 FFQKIPEQNVVSWVTMLSG----YARNGRMLEARRLF----DQMPIRNVVAWNAMIAAYV 275
               + +   +S +   +G    Y++ G +  A ++F    ++   ++VV W A+I+ Y 
Sbjct: 442 IHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYG 501

Query: 276 QRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQM--PYKNIAAQ 329
             G    A ++F+EM       N +++T+ ++       ++E   L   M   YK +A  
Sbjct: 502 MHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLARS 561

Query: 330 ---TAMISGYVQNKRMDEANQIFDKI 352
              T ++    +  R+DEA  +   I
Sbjct: 562 NHYTCIVDLLGRAGRLDEAYNLITTI 587



 Score = 47.0 bits (110), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 104/259 (40%), Gaps = 42/259 (16%)

Query: 467 HLAALQL---GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
           H AA Q     + +H   I  G V+   + ++L   YA CG I  A  LF++     ++S
Sbjct: 24  HFAATQSISKTKALHCHVITGGRVSGHIL-STLSVTYALCGHITYARKLFEEMPQSSLLS 82

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGV--APDPVTFIGVLSACSH-----VGLVDGGL 576
           +N +I  Y   G   +AI +F  MV EGV   PD  T+  V  A        +GLV  G 
Sbjct: 83  YNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGELKSMKLGLVVHGR 142

Query: 577 KL-----------------------FECMTEVYAI--EPLVEHYACMIDLLSRAGRLDEA 611
            L                        E   +V+ +     V  +  MI    R G +++A
Sbjct: 143 ILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDA 202

Query: 612 FEMVKGM---KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE--PQKTSCYALLSN 666
             M   M    +  +     ++L  C   +++++GR  V KL E +    K      L N
Sbjct: 203 LMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGR-NVHKLVEEKRLGDKIEVKNALVN 261

Query: 667 MHAEAGRWDEVEKVRVSME 685
           M+ + GR DE   V   ME
Sbjct: 262 MYLKCGRMDEARFVFDRME 280


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 190/567 (33%), Positives = 310/567 (54%), Gaps = 28/567 (4%)

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTML 240
           G +H A + F  ++   +  +NL++  + +      A   F+++ E+ +     ++  + 
Sbjct: 80  GNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVF 139

Query: 241 SGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
                 G + E  +++  +       +    N+++  Y + G+++   ++F EMP+R+ V
Sbjct: 140 KAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVV 199

Query: 297 SWTTMIDGYVRIAKLDEA----RRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIF-- 349
           SW  +I GYV+  + ++A    RR+  Q   + N A   + +S  +  K ++   +I   
Sbjct: 200 SWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRY 259

Query: 350 --DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDA 407
             +++G   +   N ++  Y +CG +  A  +F  M  K ++ W +M++GY    Q+D+A
Sbjct: 260 VREQLG-FTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEA 318

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
            ++FE     R+ V W A+I+G++Q     DA+ +F  M  +    D  TL   L+ CA 
Sbjct: 319 RELFER-SPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQ 377

Query: 468 LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSL 527
           L  L+ G+ IH    ++  + D  VG +LI MYAKCG I+ +  +F      D  SW S+
Sbjct: 378 LGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSI 437

Query: 528 IAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYA 587
           I G A+NG  ++A++LF EMV  GV PD +TFIGVLSACSH GLV+ G K F  MT VY 
Sbjct: 438 ICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQ 497

Query: 588 IEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAG------IWGTLLGACRMHQNIK 641
           IEP +EHY C+IDLL RAG+LDEA E+++     PN        ++G LL ACR H N++
Sbjct: 498 IEPKLEHYGCLIDLLGRAGQLDEAEELIEK---SPNVNNEVIVPLYGALLSACRTHGNVE 554

Query: 642 LGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVK 701
           +G    ++L  +E   +S + LL+N++A A RW++V KVR  M+  G +K PGCS +EV 
Sbjct: 555 MGERVAKRLVGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVN 614

Query: 702 NQIHTFLSGDPKQCRTAEICNTLKTLA 728
             +H FL GD       EI + L ++A
Sbjct: 615 GIVHEFLVGDASHPEMREIYSMLDSIA 641



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 121/477 (25%), Positives = 213/477 (44%), Gaps = 94/477 (19%)

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLM 208
           IGN + A+++ + +    +  +N ++  +TKNG    A   F  + E     D  ++  +
Sbjct: 79  IGNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFV 138

Query: 209 LDGYVELDDLDSAWKFFQKIPEQNVV--SWV--TMLSGYARNGRMLEARRLFDQMPIRNV 264
                 L ++    K +  + +  +   ++V  +++  YA  GR+   R++F++MP R+V
Sbjct: 139 FKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDV 198

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPE-------------------------------- 292
           V+WN +I+ YV+  + E+A  +F  M +                                
Sbjct: 199 VSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHR 258

Query: 293 --RNPVSWT-----TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
             R  + +T      ++D Y +   L  AR + + MP K +   T+M+SGYV   ++DEA
Sbjct: 259 YVREQLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEA 318

Query: 346 NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQI 401
            ++F++    DVV W  MI GY Q  R D+A+ LFR+M    V+ D  T   ++ G AQ+
Sbjct: 319 RELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQL 378

Query: 402 ----------------RQMDDAV-------------------KIFEEMGKRRNTVSWNAL 426
                           + M DAV                   +IF  + K ++T SW ++
Sbjct: 379 GTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGL-KEKDTASWTSI 437

Query: 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
           I G   N     AL++F  M Q G K D  T    LSAC+H   ++ GR+ H  ++ + Y
Sbjct: 438 ICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRK-HFRSMTAVY 496

Query: 487 VND--LFVGNSLITMYAKCGRIQNAELLFKDADPVD----VISWNSLIAGYAINGNA 537
             +  L     LI +  + G++  AE L + +  V+    V  + +L++    +GN 
Sbjct: 497 QIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNV 553



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 168/316 (53%), Gaps = 19/316 (6%)

Query: 25  LGKSGRVEEAIKIFSQMSQK----NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSW 80
           +G  G V E  K++  + +     +T   NS++  YA+ GRV + R++FE+MPQR++VSW
Sbjct: 142 IGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSW 201

Query: 81  NSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           N +I+GY+   + ++A ++F +M      RP+  +    ++       LE  +E+   + 
Sbjct: 202 NVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVR 261

Query: 136 NKE--DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
            +        NA+V  Y K G+ + A+++ + MP K ++ W SM+SGY   G++  A + 
Sbjct: 262 EQLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEAREL 321

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRM 249
           FE    RDVV W  M++GYV+ +  D A   F+++  + V     + V +L+G A+ G +
Sbjct: 322 FERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTL 381

Query: 250 LEARRL---FDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGY 305
            + + +    D+  I  + V   A+I  Y + G IE++  +F  + E++  SWT++I G 
Sbjct: 382 EQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGL 441

Query: 306 VRIAKLDEARRLLDQM 321
               K  +A  L  +M
Sbjct: 442 AMNGKTSKALELFAEM 457



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 163/364 (44%), Gaps = 59/364 (16%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +    + GRV+   ++F +M Q++ V++N +IS Y K  R  DA  +F +M Q++ +
Sbjct: 171 NSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSL 230

Query: 79  SWN-----SMIAGYLHNDKVKEARELFDKMFRPDL-FSWAL---MITCYTRKGELEKARE 129
             N     S ++  +    ++  +E+  +  R  L F+  +   ++  Y + G L  ARE
Sbjct: 231 RPNEATVVSTLSACIALKMLELGKEI-HRYVREQLGFTIKIGNALVDMYCKCGHLSIARE 289

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           +F+ +P K    CW +MV+GY   G  +EA++L +  P +++V W +M++GY +      
Sbjct: 290 IFNDMPIK-TVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDD 348

Query: 190 ASKFFEAMEER---------------------------------------DVVSWNLMLD 210
           A   F  M+ +                                       D V    +++
Sbjct: 349 AVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIE 408

Query: 211 GYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VA 266
            Y +   ++ + + F  + E++  SW +++ G A NG+  +A  LF +M    V    + 
Sbjct: 409 MYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDIT 468

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMP-----ERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           +  +++A    G +EE  + F  M      E     +  +ID   R  +LDEA  L+++ 
Sbjct: 469 FIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKS 528

Query: 322 PYKN 325
           P  N
Sbjct: 529 PNVN 532



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 134/280 (47%), Gaps = 20/280 (7%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K G +  A +IF+ M  K  + + SM+S Y   G++++AR+LFE+ P R++V W +MI G
Sbjct: 280 KCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMING 339

Query: 87  YLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKE---D 139
           Y+  ++  +A  LF +M      PD F+   ++T   + G LE+ + +   +   +   D
Sbjct: 340 YVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMID 399

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE 199
                A++  YAK G   ++ ++ + +  K+  SW S++ G   NG+   A + F  M +
Sbjct: 400 AVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQ 459

Query: 200 RDVVSWNLMLDGYVELDD----LDSAWKFFQKIP-----EQNVVSWVTMLSGYARNGRML 250
             V   ++   G +        ++   K F+ +      E  +  +  ++    R G++ 
Sbjct: 460 TGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLD 519

Query: 251 EARRLFDQMPIRN----VVAWNAMIAAYVQRGQIEEAARL 286
           EA  L ++ P  N    V  + A+++A    G +E   R+
Sbjct: 520 EAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERV 559


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 217/733 (29%), Positives = 365/733 (49%), Gaps = 70/733 (9%)

Query: 56  YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM-------FRPDL 108
           Y K GRV DAR LF+ M  R + SWN++I  YL +    EA  ++  M         PD 
Sbjct: 105 YGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDG 164

Query: 109 FSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDA 165
            + A ++     +G+     E+  L         T   NA++A YAK G  + A ++ + 
Sbjct: 165 CTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFEL 224

Query: 166 M-PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL-----MLDGYVELDDLD 219
           M   +++ SWNSM+SG  +NG    A   F  M+ R V+S N      +L    EL  L+
Sbjct: 225 MHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQ-RAVLSMNSYTTVGVLQVCTELAQLN 283

Query: 220 SAWKFFQKIPEQNV---VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ 276
              +    + +      +    +L  Y + GR+  A R+F ++  ++ ++WN+M++ YVQ
Sbjct: 284 LGRELHAALLKSGSEVNIQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQ 343

Query: 277 RGQIEEAARLFIEM------PERNP-VSWTTMID--GYVRIAKLDEARRLLDQMPYKNIA 327
            G   EA     EM      P+    VS ++ +   G++   K   A  +  ++      
Sbjct: 344 NGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQV 403

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ----- 382
             T M   Y++ + ++ +  +FD++   D + W  +I  YAQ  R  EA+ +FR+     
Sbjct: 404 GNTLM-DMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEG 462

Query: 383 ------MVNK---------------------------DIVTWNTMIAGYAQIRQMDDAVK 409
                 M+                             D+V  N +I  Y +  ++  ++K
Sbjct: 463 IKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLLDLVVKNRIIDIYGECGEVYHSLK 522

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           +FE + ++++ V+W ++I+ +  +    +AL +F  M     + D   L   L A   L+
Sbjct: 523 MFETV-EQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLS 581

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
           +L  G+++H   I+  +  +  + +SL+ MY+ CG +  A  +F      D++ W ++I 
Sbjct: 582 SLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMIN 641

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE 589
              ++G+  +AI LF+ M+  GV PD V+F+ +L ACSH  LV+ G    + M   Y +E
Sbjct: 642 ATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLE 701

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649
           P  EHYAC++DLL R+G+ +EA+E +K M +KP + +W +LLGACR+H+N +L  +A  +
Sbjct: 702 PWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANR 761

Query: 650 LSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLS 709
           L ELEP     Y L+SN+ AE G+W+  ++VR  +   G +K P CSWIE+ N +HTF +
Sbjct: 762 LLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIGNNVHTFTT 821

Query: 710 GDPKQCRTAEICN 722
            D    R AE  N
Sbjct: 822 RDNSH-RDAERIN 833



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/375 (28%), Positives = 175/375 (46%), Gaps = 24/375 (6%)

Query: 222 WKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF-DQMPIRN--------VVAWNAMIA 272
           +K F   P        T L    + G + +A RL   Q P R+        V+   A   
Sbjct: 13  YKKFSTTPPSISPPDPTSLKQLCKEGNLRQALRLLTSQTPGRSPPQEHYGWVLDLVAAKK 72

Query: 273 AYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAM 332
           A  Q  Q+   A     +   +    T ++  Y +  ++ +AR L D M  + + +  A+
Sbjct: 73  AVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNAL 132

Query: 333 ISGYVQNKRMDEANQIF--------DKIGTHDVVCWNVM----IKGYAQCGRMDEAINLF 380
           I  Y+ +    EA  ++          +        +V+    ++G  +CG     + + 
Sbjct: 133 IGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAV- 191

Query: 381 RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
           +  +++     N +IA YA+   +D A+++FE M   R+  SWN++ISG LQN   L AL
Sbjct: 192 KHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQAL 251

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500
            +F  M +     +  T    L  C  LA L LGR++H   +KSG   ++   N+L+ MY
Sbjct: 252 DLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQC-NALLVMY 310

Query: 501 AKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
            KCGR+ +A  +F++ D  D ISWNS+++ Y  NG   EAI+   EM+  G  PD    +
Sbjct: 311 TKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIV 370

Query: 561 GVLSACSHVG-LVDG 574
            + SA  H+G L++G
Sbjct: 371 SLSSAVGHLGWLLNG 385



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 164/362 (45%), Gaps = 22/362 (6%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           N+++  Y K GRV+ A ++F ++ +++ +SWNSM++ Y+ N    EA E   +M    F+
Sbjct: 304 NALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQ 363

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKL 162
           PD      + +     G L   +E+      +    DT   N ++  Y K      +  +
Sbjct: 364 PDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHV 423

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE----LDDL 218
            D M  K+ +SW ++++ Y ++     A + F   ++  +    +M+   +E    L+ +
Sbjct: 424 FDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETI 483

Query: 219 DSAWKFFQKIPEQNVVSWVT---MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
             A +         ++  V    ++  Y   G +  + ++F+ +  +++V W +MI  Y 
Sbjct: 484 LLAKQLHCYAIRNGLLDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYA 543

Query: 276 QRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
             G + EA  LF EM     + + V+  +++     ++ L + + +   +  +N   + A
Sbjct: 544 NSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEA 603

Query: 332 MISG----YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD 387
           ++S     Y     +  A ++F+ +   D+V W  MI      G   +AI+LF++M+   
Sbjct: 604 IVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTG 663

Query: 388 IV 389
           + 
Sbjct: 664 VT 665



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 105/496 (21%), Positives = 205/496 (41%), Gaps = 88/496 (17%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRN-- 76
           N  +    K GRV+ A+++F ++ +K+ +++NSM+S Y +NG   +A +   +M +    
Sbjct: 304 NALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQ 363

Query: 77  -----LVSWNSMIA--GYLHNDK------------------------------VKEAREL 99
                +VS +S +   G+L N K                              ++ +  +
Sbjct: 364 PDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHV 423

Query: 100 FDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA 159
           FD+M   D  SW  +ITCY +     +A E+F     KE       M+    +  +  E 
Sbjct: 424 FDRMRIKDHISWTTIITCYAQSSRHIEALEIFR-EAQKEGIKVDPMMIGSILEACSGLET 482

Query: 160 ---KKLLDAMPSKN----IVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY 212
               K L     +N    +V  N ++  Y + GE++ + K FE +E++D+V+W  M++ Y
Sbjct: 483 ILLAKQLHCYAIRNGLLDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCY 542

Query: 213 VELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN 268
                L+ A   F ++   +V    V+ V++L        + + + +   +  RN     
Sbjct: 543 ANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEE 602

Query: 269 AMIAAYVQR----GQIEEAARLFIEMPERNPVSWTTMID-----GYVRIAKLDEARRLLD 319
           A++++ V      G +  A ++F  +  ++ V WT MI+     G+ + A +D  +R+L 
Sbjct: 603 AIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQA-IDLFKRMLQ 661

Query: 320 QMPYKNIAAQTAMISGYVQNKRMDEANQIFD-KIGTHDVVCWN----VMIKGYAQCGRMD 374
                +  +  A++     +K ++E     D  + T+ +  W      ++    + G+ +
Sbjct: 662 TGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTE 721

Query: 375 EAINLFRQM-VNKDIVTWNTMIAGYAQIRQMDDAV---------------------KIFE 412
           EA    + M +    V W +++      +  + AV                      +F 
Sbjct: 722 EAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFA 781

Query: 413 EMGKRRNTVSWNALIS 428
           EMGK  N     A IS
Sbjct: 782 EMGKWNNAKEVRARIS 797



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 22/178 (12%)

Query: 470 ALQLGRQIHHLAIKSGYV--NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSL 527
           A+  G Q+H  A+ +G +  +D F+   L+ MY KCGR+ +A LLF       V SWN+L
Sbjct: 73  AVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNAL 132

Query: 528 IAGYAINGNATEAIKLFEEMVM---EGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           I  Y  +G+A EA+ ++  M +    GVAPD  T   VL A    G  DG      C  E
Sbjct: 133 IGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEG--DG-----RCGCE 185

Query: 585 VYAIEPLVEH--------YACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGAC 634
           V+ +   V+H           +I + ++ G LD A  + + M    +   W +++  C
Sbjct: 186 VHGLA--VKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGC 241



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 139/321 (43%), Gaps = 53/321 (16%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           +N+ I   G+ G V  ++K+F  + QK+ VT+ SMI+ YA +G +N+A  LF +M   ++
Sbjct: 504 KNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDV 563

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
                                      +PD  +   ++        L K +E+   L  +
Sbjct: 564 ---------------------------QPDSVALVSILGAIGGLSSLAKGKEVHGFLIRR 596

Query: 138 E---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
               + A  +++V  Y+  G+ + A K+ +A+  K++V W +M++    +G    A   F
Sbjct: 597 NFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLF 656

Query: 195 EAMEER----DVVSWNLML----------DGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
           + M +     D VS+  +L          +G   LD + S ++     P Q   + V  L
Sbjct: 657 KRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLE---PWQEHYACVVDL 713

Query: 241 SGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE---EAARLFIEMPERNPV 296
            G  R+G+  EA      MP++   V W +++ A       E    AA   +E+   NP 
Sbjct: 714 LG--RSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELEPDNPG 771

Query: 297 SWTTMIDGYVRIAKLDEARRL 317
           ++  + + +  + K + A+ +
Sbjct: 772 NYVLVSNVFAEMGKWNNAKEV 792


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 201/645 (31%), Positives = 347/645 (53%), Gaps = 31/645 (4%)

Query: 113 LMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM---PSK 169
           L++    + G L  AR+LFD +  +++ + W  +++GY    N  EA  L   M   P  
Sbjct: 6   LVLKNLVKTGHLNNARQLFDKMLQRDEIS-WTTIISGYVNGMNTTEALSLFSKMWVEPGL 64

Query: 170 NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS--------WNLMLDGYVELDDLDSA 221
           ++  +  +LS   K   ++++  F E++    V +         + ++D Y+++  +D  
Sbjct: 65  HMDPF--ILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEG 122

Query: 222 WKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQR 277
              F+++P +NVVSW  +++G  R G   EA   F  M I+ V      +++ + A    
Sbjct: 123 CIVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADS 182

Query: 278 GQIEEAARLFIEMPER--NPVSWT--TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMI 333
           G +     +  +  ++    VS+   T+   Y +  KLD   RL + M  +++ + T +I
Sbjct: 183 GALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTII 242

Query: 334 SGYVQNKRMDEANQIFDKIGTHDV----VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIV 389
              VQ  + + A + F ++   DV      +  +I G A  GR++    L   ++ + +V
Sbjct: 243 MSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLV 302

Query: 390 ----TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVL 445
                 N+++A Y++  Q+D A  +F+ +  RR+ +SW+ +ISG+ Q     +A      
Sbjct: 303 DSLSVANSIMAMYSKCWQLDLASTVFQGL-SRRDIISWSTMISGYAQGGCGEEAFDYLSW 361

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
           M +EG + +    A  LS C ++A L+ G+Q+H   +  G   +  V ++LI MY+KCG 
Sbjct: 362 MRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGS 421

Query: 506 IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565
           I+ A  +F +A+  +++SW ++I GYA +G + EAI LF+++   G+ PD VTFI VL+A
Sbjct: 422 IKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAA 481

Query: 566 CSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAG 625
           CSH GLVD G   F  +++V+ I P  +HY CMIDLL RAGRL++A  M++ M  + +  
Sbjct: 482 CSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLNDAESMIQSMPFQRDDV 541

Query: 626 IWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685
           +W TLL ACR+H ++  G+ A EK+ +L+P     +  L+NM+A  G+W E  +VR  M+
Sbjct: 542 VWSTLLRACRIHGDVDCGKRAAEKILQLDPNCAVTHITLANMYAAKGKWKEAAEVRKMMK 601

Query: 686 GSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQ 730
             G  K+PG SWI+ K+++  F+SGD        I + L  LA+Q
Sbjct: 602 SKGVVKEPGWSWIKFKDRVSAFVSGDRSHPEGEYIYDVLDLLASQ 646



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 129/559 (23%), Positives = 255/559 (45%), Gaps = 80/559 (14%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----- 104
           N ++    K G +N+AR+LF++M QR+ +SW ++I+GY++     EA  LF KM+     
Sbjct: 5   NLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGL 64

Query: 105 --RPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTA-CWNAMVAGYAKIGNYNEAKK 161
              P + S AL            ++   + +  +  ++    +A+V  Y KIG  +E   
Sbjct: 65  HMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCI 124

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA 221
           +   MP +N+VSW ++++G  + G    A  +F  M  + V          ++      A
Sbjct: 125 VFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGA 184

Query: 222 WKFFQKIPEQNV------VSWV--TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
             + ++I  Q +      VS+V  T+ + Y + G++    RLF+ M  R+VV+W  +I +
Sbjct: 185 LNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMS 244

Query: 274 YVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYK----N 325
            VQ GQ E A + F  M E     N  ++  +I G   + +++   +L   +  +    +
Sbjct: 245 NVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDS 304

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-- 383
           ++   ++++ Y +  ++D A+ +F  +   D++ W+ MI GYAQ G  +EA +    M  
Sbjct: 305 LSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRR 364

Query: 384 -------------------------------------VNKDIVTWNTMIAGYAQIRQMDD 406
                                                + ++ +  + +I  Y++   + +
Sbjct: 365 EGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKE 424

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
           A KIF+E  +  N VSW A+I+G+ ++ +  +A+ +F  + + G + D  T    L+AC+
Sbjct: 425 ASKIFDE-AEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACS 483

Query: 467 HLAALQLG-------RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
           H   + LG        ++H +     +         +I +  + GR+ +AE + +   P 
Sbjct: 484 HAGLVDLGFHYFNSLSKVHQICPSKDHY------GCMIDLLCRAGRLNDAESMIQSM-PF 536

Query: 520 --DVISWNSLIAGYAINGN 536
             D + W++L+    I+G+
Sbjct: 537 QRDDVVWSTLLRACRIHGD 555



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 135/284 (47%), Gaps = 38/284 (13%)

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
           N+++K   + G ++ A  LF +M+ +D ++W T+I+GY       +A+ +F +M      
Sbjct: 5   NLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKM------ 58

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
                    +++   H+D                   L+ AL AC    ++  G  +H  
Sbjct: 59  ---------WVEPGLHMDPF----------------ILSLALKACGLNMSVSFGESLHGY 93

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEA 540
           ++K+ +VN +FVG++L+ MY K G++    ++FK+    +V+SW ++IAG    G   EA
Sbjct: 94  SVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEA 153

Query: 541 IKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMID 600
           +  F +M ++ V  D  TF   L AC+  G ++ G ++  C T       +      +  
Sbjct: 154 LAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREI-HCQTLKKGFTAVSFVANTLAT 212

Query: 601 LLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
           + ++ G+LD    + + M  + +   W T++       N+++G+
Sbjct: 213 MYNKCGKLDYGLRLFESMT-QRDVVSWTTII-----MSNVQIGQ 250



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/362 (22%), Positives = 168/362 (46%), Gaps = 33/362 (9%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTV----TYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           I+     GR+E   ++ + + ++  V      NS+++ Y+K  +++ A  +F+ + +R++
Sbjct: 277 ISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDI 336

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFD- 132
           +SW++MI+GY      +EA +    M     RP+ F++A +++       LE+ ++L   
Sbjct: 337 ISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAH 396

Query: 133 --LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
              +  +++T   +A++  Y+K G+  EA K+ D     NIVSW +M++GY ++G    A
Sbjct: 397 VLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEA 456

Query: 191 SKFFEAMEE----RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLS 241
              F+ + +     D V++  +L        +D  + +F  + + + +      +  M+ 
Sbjct: 457 IDLFKKLPKVGLRPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMID 516

Query: 242 GYARNGRMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQIE---EAARLFIEMPERNPVS 297
              R GR+ +A  +   MP  R+ V W+ ++ A    G ++    AA   +++     V+
Sbjct: 517 LLCRAGRLNDAESMIQSMPFQRDDVVWSTLLRACRIHGDVDCGKRAAEKILQLDPNCAVT 576

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA--------MISGYVQNKRMD-EANQI 348
             T+ + Y    K  EA  +   M  K +  +           +S +V   R   E   I
Sbjct: 577 HITLANMYAAKGKWKEAAEVRKMMKSKGVVKEPGWSWIKFKDRVSAFVSGDRSHPEGEYI 636

Query: 349 FD 350
           +D
Sbjct: 637 YD 638



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 93/199 (46%), Gaps = 14/199 (7%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           Q+  I    K G ++EA KIF +    N V++ +MI+ YA++G   +A  LF+++P+  L
Sbjct: 409 QSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGL 468

Query: 78  ----VSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKAR 128
               V++ +++A   H   V      F+ + +     P    +  MI    R G L  A 
Sbjct: 469 RPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLNDAE 528

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYN----EAKKLLDAMPSKNIVSWNSMLSGYTKN 184
            +   +P + D   W+ ++      G+ +     A+K+L   P+   V+  ++ + Y   
Sbjct: 529 SMIQSMPFQRDDVVWSTLLRACRIHGDVDCGKRAAEKILQLDPN-CAVTHITLANMYAAK 587

Query: 185 GEMHLASKFFEAMEERDVV 203
           G+   A++  + M+ + VV
Sbjct: 588 GKWKEAAEVRKMMKSKGVV 606



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 78/181 (43%), Gaps = 8/181 (4%)

Query: 494 NSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME-GV 552
           N ++    K G + NA  LF      D ISW ++I+GY    N TEA+ LF +M +E G+
Sbjct: 5   NLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGL 64

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
             DP      L AC     V  G  L     +   +  +    A ++D+  + G++DE  
Sbjct: 65  HMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSA-LVDMYMKIGKVDEGC 123

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSC--YALLSNMHAE 670
            + K M ++        + G  R   N    + A+   S++  QK  C  Y   S + A 
Sbjct: 124 IVFKEMPLRNVVSWTAIIAGLVRAGYN----KEALAYFSDMWIQKVGCDTYTFSSALKAC 179

Query: 671 A 671
           A
Sbjct: 180 A 180


>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 613

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 180/460 (39%), Positives = 261/460 (56%), Gaps = 4/460 (0%)

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
             ++  Y + G++++A R+F  +  ++   + TMI  Y+   +++ A  L + MP +N  
Sbjct: 143 TTLVDLYARCGRLDDARRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVMPERNTH 202

Query: 328 AQTAMISGYVQNKRMDEANQIFDKI-GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
               M+ GY     MD A  +F+   G  ++V    MI G+A+ G +D+A ++F  M  +
Sbjct: 203 TLMEMVGGYSARGDMDSAKHVFEMANGVVNMVLCTAMISGFAKTGSVDDARSVFDGMRQR 262

Query: 387 DIVTWNTMIA-GYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVL 445
           D+ TWN MI   YA+   ++DA K+F+ M   RN V W ++ISG+ Q      A+K+F  
Sbjct: 263 DVATWNVMIGVMYAKCGLVEDARKVFDAM-PERNVVCWTSMISGYTQVGKFKQAVKLFRD 321

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
           M   G KAD +T+A  +S+C  + AL LGR +H      G    + V NSLI MY+KCG 
Sbjct: 322 MQISGVKADDATIATVVSSCGQMGALDLGRYVHAYCDVHGLGKGISVKNSLIDMYSKCGD 381

Query: 506 IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG-VAPDPVTFIGVLS 564
           I+ A  +F+     D  SW  +I G+A+NG + EA+ LF +M  EG V P+ +TF+GVL+
Sbjct: 382 IKKAHEIFRGLVKRDDFSWTVMIMGFAVNGLSGEALDLFAQMEEEGEVMPNEITFLGVLT 441

Query: 565 ACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNA 624
           +CSH GLV+ G   F  M++VY I P +EHY CM+DLL RA  L EA + ++ M I P+ 
Sbjct: 442 SCSHGGLVEQGYHHFHRMSKVYGIAPRIEHYGCMVDLLGRAKLLAEAEQFIEEMPIAPDV 501

Query: 625 GIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSM 684
            IW +LL ACR    + L     E++ ELEP +     LLSN++A   RW +V KVR  M
Sbjct: 502 AIWRSLLFACRARGEVGLAEYVAERVEELEPSRCGGNVLLSNVYATTSRWVDVNKVRTGM 561

Query: 685 EGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTL 724
             S   K+PGCS IEV    H FLSGD     T  I N L
Sbjct: 562 GRSRVSKRPGCSVIEVNGCAHEFLSGDETHLETEAIYNIL 601



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 165/347 (47%), Gaps = 52/347 (14%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           + GR+++A ++F ++  K+   YN+MI+AY + G V  A +LFE MP+RN  +   M+ G
Sbjct: 151 RCGRLDDARRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVMPERNTHTLMEMVGG 210

Query: 87  YLHNDKVKEARELFDKM-FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNA 145
           Y     +  A+ +F+      ++     MI+ + + G ++ AR +FD +  + D A WN 
Sbjct: 211 YSARGDMDSAKHVFEMANGVVNMVLCTAMISGFAKTGSVDDARSVFDGM-RQRDVATWNV 269

Query: 146 MVA-GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME------ 198
           M+   YAK G   +A+K+ DAMP +N+V W SM+SGYT+ G+   A K F  M+      
Sbjct: 270 MIGVMYAKCGLVEDARKVFDAMPERNVVCWTSMISGYTQVGKFKQAVKLFRDMQISGVKA 329

Query: 199 ---------------------------------ERDVVSWNLMLDGYVELDDLDSAWKFF 225
                                             + +   N ++D Y +  D+  A + F
Sbjct: 330 DDATIATVVSSCGQMGALDLGRYVHAYCDVHGLGKGISVKNSLIDMYSKCGDIKKAHEIF 389

Query: 226 QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP-----IRNVVAWNAMIAAYVQRGQI 280
           + + +++  SW  M+ G+A NG   EA  LF QM      + N + +  ++ +    G +
Sbjct: 390 RGLVKRDDFSWTVMIMGFAVNGLSGEALDLFAQMEEEGEVMPNEITFLGVLTSCSHGGLV 449

Query: 281 EEAARLFIEMPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQMP 322
           E+    F  M +   ++     +  M+D   R   L EA + +++MP
Sbjct: 450 EQGYHHFHRMSKVYGIAPRIEHYGCMVDLLGRAKLLAEAEQFIEEMP 496



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 156/296 (52%), Gaps = 9/296 (3%)

Query: 35  IKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVK 94
           + +F    Q +     +++  YA+ GR++DAR++F+++  ++   +N+MIA Y+   +V+
Sbjct: 128 VHVFKNGFQTDERIATTLVDLYARCGRLDDARRVFDRLLVKDAQLYNTMIAAYMEAGEVE 187

Query: 95  EARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIG 154
            A ELF+ M   +  +   M+  Y+ +G+++ A+ +F++     +     AM++G+AK G
Sbjct: 188 LAEELFEVMPERNTHTLMEMVGGYSARGDMDSAKHVFEMANGVVNMVLCTAMISGFAKTG 247

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLS-GYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV 213
           + ++A+ + D M  +++ +WN M+   Y K G +  A K F+AM ER+VV W  M+ GY 
Sbjct: 248 SVDDARSVFDGMRQRDVATWNVMIGVMYAKCGLVEDARKVFDAMPERNVVCWTSMISGYT 307

Query: 214 ELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFDQMPI----RNVV 265
           ++     A K F+ +    V     +  T++S   + G +   R +     +    + + 
Sbjct: 308 QVGKFKQAVKLFRDMQISGVKADDATIATVVSSCGQMGALDLGRYVHAYCDVHGLGKGIS 367

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
             N++I  Y + G I++A  +F  + +R+  SWT MI G+       EA  L  QM
Sbjct: 368 VKNSLIDMYSKCGDIKKAHEIFRGLVKRDDFSWTVMIMGFAVNGLSGEALDLFAQM 423



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 136/285 (47%), Gaps = 38/285 (13%)

Query: 377 INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ-NEF 435
           +++F+     D     T++  YA+  ++DDA ++F+ +   ++   +N +I+ +++  E 
Sbjct: 128 VHVFKNGFQTDERIATTLVDLYARCGRLDDARRVFDRL-LVKDAQLYNTMIAAYMEAGEV 186

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLA-------------- 481
            L A ++F +M +     +  TL   +   +    +   + +  +A              
Sbjct: 187 EL-AEELFEVMPER----NTHTLMEMVGGYSARGDMDSAKHVFEMANGVVNMVLCTAMIS 241

Query: 482 --IKSGYVND---LFVG---------NSLI-TMYAKCGRIQNAELLFKDADPVDVISWNS 526
              K+G V+D   +F G         N +I  MYAKCG +++A  +F      +V+ W S
Sbjct: 242 GFAKTGSVDDARSVFDGMRQRDVATWNVMIGVMYAKCGLVEDARKVFDAMPERNVVCWTS 301

Query: 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVY 586
           +I+GY   G   +A+KLF +M + GV  D  T   V+S+C  +G +D G +      +V+
Sbjct: 302 MISGYTQVGKFKQAVKLFRDMQISGVKADDATIATVVSSCGQMGALDLG-RYVHAYCDVH 360

Query: 587 AIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
            +   +     +ID+ S+ G + +A E+ +G+ +K +   W  ++
Sbjct: 361 GLGKGISVKNSLIDMYSKCGDIKKAHEIFRGL-VKRDDFSWTVMI 404



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 115/257 (44%), Gaps = 17/257 (6%)

Query: 438 DALKIFVLMTQ--EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS 495
           DA+ ++  M +   G +    T++  L A A    L+ G Q+H    K+G+  D  +  +
Sbjct: 85  DAVALYAQMHRGCPGVRPLTFTVSSVLKAAARREMLREGEQVHVHVFKNGFQTDERIATT 144

Query: 496 LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555
           L+ +YA+CGR+ +A  +F      D   +N++IA Y   G    A +LFE M       +
Sbjct: 145 LVDLYARCGRLDDARRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVMPER----N 200

Query: 556 PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYAC--MIDLLSRAGRLDEAFE 613
             T + ++   S  G +D    +FE    V      V    C  MI   ++ G +D+A  
Sbjct: 201 THTLMEMVGGYSARGDMDSAKHVFEMANGV------VNMVLCTAMISGFAKTGSVDDARS 254

Query: 614 MVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGR 673
           +  GM+ + +   W  ++G   M+    L   A +    +  +   C+  + + + + G+
Sbjct: 255 VFDGMR-QRDVATWNVMIGV--MYAKCGLVEDARKVFDAMPERNVVCWTSMISGYTQVGK 311

Query: 674 WDEVEKVRVSMEGSGAQ 690
           + +  K+   M+ SG +
Sbjct: 312 FKQAVKLFRDMQISGVK 328



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 101/253 (39%), Gaps = 80/253 (31%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFE---------------- 70
           K G VE+A K+F  M ++N V + SMIS Y + G+   A KLF                 
Sbjct: 277 KCGLVEDARKVFDAMPERNVVCWTSMISGYTQVGKFKQAVKLFRDMQISGVKADDATIAT 336

Query: 71  ------QMPQRNLVSW-----------------NSMIAGYLHNDKVKEARELFDKMFRPD 107
                 QM   +L  +                 NS+I  Y     +K+A E+F  + + D
Sbjct: 337 VVSSCGQMGALDLGRYVHAYCDVHGLGKGISVKNSLIDMYSKCGDIKKAHEIFRGLVKRD 396

Query: 108 LFSWALMITCYTRKGELEKARELF-------DLLPNKED-----TACWNAMVA--GY--- 150
            FSW +MI  +   G   +A +LF       +++PN+       T+C +  +   GY   
Sbjct: 397 DFSWTVMIMGFAVNGLSGEALDLFAQMEEEGEVMPNEITFLGVLTSCSHGGLVEQGYHHF 456

Query: 151 ----------AKIGNYN-------------EAKKLLDAMP-SKNIVSWNSMLSGYTKNGE 186
                      +I +Y              EA++ ++ MP + ++  W S+L      GE
Sbjct: 457 HRMSKVYGIAPRIEHYGCMVDLLGRAKLLAEAEQFIEEMPIAPDVAIWRSLLFACRARGE 516

Query: 187 MHLASKFFEAMEE 199
           + LA    E +EE
Sbjct: 517 VGLAEYVAERVEE 529


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 183/556 (32%), Positives = 295/556 (53%), Gaps = 50/556 (8%)

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP----IRNVVAWNA 269
             D L  A   F+ I E N++ W TM  G+A +   + A +L+  M     + N   +  
Sbjct: 37  HFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPF 96

Query: 270 MIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           ++ +  +    +E  ++   +     + +    T++I  YV+  +L++A ++ D+ P+++
Sbjct: 97  LLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRD 156

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-- 383
           + + TA+I GY     ++ A ++FD+I   DVV WN MI GYA+ G   EA+ LF+ M  
Sbjct: 157 VVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMK 216

Query: 384 ------------------------VNKDIVTW-------------NTMIAGYAQIRQMDD 406
                                   + + + +W             N +I  Y++  +++ 
Sbjct: 217 TNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELET 276

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
           A  +FE +   ++ +SWN LI G+     + +AL +F  M + G+  +  T+   L ACA
Sbjct: 277 ACGLFEGL-PYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACA 335

Query: 467 HLAALQLGRQIHHLAIK--SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
           HL A+ +GR IH    K   G  N   +  SLI MYAKCG I+ A  +F       + SW
Sbjct: 336 HLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSW 395

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           N++I G+A++G A  +  +F  M   G+ PD +TF+G+LSACSH G++D G  +F  MT+
Sbjct: 396 NAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQ 455

Query: 585 VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
            Y + P +EHY CMIDLL  +G   EA EM+  M+++P+  IW +LL AC+MH N++LG 
Sbjct: 456 DYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGE 515

Query: 645 IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQI 704
              + L ++EP+    Y LLSN++A AGRW+EV   R  +   G +K PGCS IE+ + +
Sbjct: 516 SFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGCSSIEIDSVV 575

Query: 705 HTFLSGDPKQCRTAEI 720
           H F+ GD    R  EI
Sbjct: 576 HEFIIGDKFHPRNREI 591



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 142/598 (23%), Positives = 237/598 (39%), Gaps = 134/598 (22%)

Query: 89  HNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF------DLLPNKEDTAC 142
           H D +  A  +F+ +  P+L  W  M   +    +   A +L+       LLPN   +  
Sbjct: 37  HFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPN---SYT 93

Query: 143 WNAMVAGYAKIGNYNEAKKL----LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           +  ++   AK   + E +++    L      ++    S++S Y +NG +  A K F+   
Sbjct: 94  FPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESP 153

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
            RDVVS+  ++ GY     +++A K F +IP ++VVSW  M+SGYA  G   EA  LF  
Sbjct: 154 HRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKD 213

Query: 259 MPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAK 310
           M   NV         +++A  Q G IE   ++   + +     N      +ID Y +  +
Sbjct: 214 MMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGE 273

Query: 311 LDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK------------------- 351
           L+ A  L + +PYK++ +   +I GY       EA  +F +                   
Sbjct: 274 LETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPA 333

Query: 352 ---IGTHDVVCW-------------------NVMIKGYAQCGRMDEAINLFRQMVNKDIV 389
              +G  D+  W                     +I  YA+CG ++ A  +F  +++K + 
Sbjct: 334 CAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLS 393

Query: 390 TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
           +WN MI G+A   + D +  IF  M  R+N                              
Sbjct: 394 SWNAMIFGFAMHGRADASFDIFSRM--RKN------------------------------ 421

Query: 450 GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA 509
           G + D  T    LSAC+H   L LGR I                 S+   Y    ++++ 
Sbjct: 422 GIEPDDITFVGLLSACSHSGMLDLGRHIF---------------RSMTQDYKMTPKLEHY 466

Query: 510 ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
             +      +D++  + L           EA ++   M ME   PD V +  +L AC   
Sbjct: 467 GCM------IDLLGHSGLF---------KEAEEMINTMEME---PDGVIWCSLLKACKMH 508

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDE-----AFEMVKGMKIKP 622
           G V+ G    + + ++    P    Y  + ++ + AGR +E     A    KGMK  P
Sbjct: 509 GNVELGESFAQNLIKIEPENP--GSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVP 564



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/461 (23%), Positives = 206/461 (44%), Gaps = 69/461 (14%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL----- 88
           AI +F  + + N + +N+M   +A +     A KL+  M    L+  NS    +L     
Sbjct: 44  AISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLP-NSYTFPFLLKSCA 102

Query: 89  HNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWN 144
            +   KE +++   + +     DL+    +I+ Y + G LE A ++FD  P++ D   + 
Sbjct: 103 KSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHR-DVVSYT 161

Query: 145 AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE----- 199
           A++ GYA  G    A+K+ D +P K++VSWN+M+SGY + G    A + F+ M +     
Sbjct: 162 ALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRP 221

Query: 200 ---------------------RDVVSW-------------NLMLDGYVELDDLDSAWKFF 225
                                R V SW             N ++D Y +  +L++A   F
Sbjct: 222 DESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLF 281

Query: 226 QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM----PIRNVVAWNAMIAAYVQRGQIE 281
           + +P ++V+SW T++ GY       EA  LF +M       N V   +++ A    G I+
Sbjct: 282 EGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAID 341

Query: 282 EAARLFIEMPER-----NPVSW-TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG 335
               + + + +R     N  S  T++ID Y +   ++ A ++ + + +K++++  AMI G
Sbjct: 342 IGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFG 401

Query: 336 YVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT- 390
           +  + R D +  IF ++  +    D + +  ++   +  G +D   ++FR M     +T 
Sbjct: 402 FAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTP 461

Query: 391 ----WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
               +  MI          +A ++   M    + V W +L+
Sbjct: 462 KLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLL 502



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 162/328 (49%), Gaps = 21/328 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           ++     I+   ++GR+E+A K+F +   ++ V+Y ++I  YA  G + +A+K+F+++P 
Sbjct: 126 LYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPV 185

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKAREL 130
           +++VSWN+MI+GY      KEA ELF  M     RPD  +   +++   + G +E  R++
Sbjct: 186 KDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQV 245

Query: 131 FDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
              + +     +    NA++  Y+K G    A  L + +P K+++SWN+++ GYT     
Sbjct: 246 HSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLY 305

Query: 188 HLASKFFEAM----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ-----NVVSWVT 238
             A   F+ M    E  + V+   +L     L  +D        I ++     N  S  T
Sbjct: 306 KEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRT 365

Query: 239 -MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ER 293
            ++  YA+ G +  A ++F+ +  +++ +WNAMI  +   G+ + +  +F  M     E 
Sbjct: 366 SLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEP 425

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           + +++  ++        LD  R +   M
Sbjct: 426 DDITFVGLLSACSHSGMLDLGRHIFRSM 453


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 183/484 (37%), Positives = 276/484 (57%), Gaps = 30/484 (6%)

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWTTMIDGYVRIAKLD 312
           +F Q+   N   W AMI  Y  +G + E+   +  M      PVS+T         A   
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFS-------ALFK 150

Query: 313 EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGR 372
                L+    K + AQT +I G+                   D+   N MI  Y +CG 
Sbjct: 151 ACGAALNMDLGKQVHAQTILIGGFAS-----------------DLYVGNSMIDLYVKCGF 193

Query: 373 MDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
           +  A  +F +M  +D+V+W  +I  YA+   M+ A  +F+++   ++ V+W A+++G+ Q
Sbjct: 194 LGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDL-PLKDMVAWTAMVTGYAQ 252

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY--VNDL 490
           N    +AL+ F  M   G + D  TLA  +SACA L A++    I  +A +SG+    ++
Sbjct: 253 NGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNV 312

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME 550
            VG++LI MY+KCG    A  +F+     +V S++S+I GYA++G A  A++LF +M+  
Sbjct: 313 VVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKT 372

Query: 551 GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDE 610
            + P+ VTFIG+LSACSH GLV+ G +LF  M + + + P  +HYACM+DLL RAG L+E
Sbjct: 373 EIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEE 432

Query: 611 AFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAE 670
           A ++VK M ++PN G+WG LLGACR+H N  + +IA  +L +LEP     Y LLSN++A 
Sbjct: 433 ALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGNYILLSNIYAS 492

Query: 671 AGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKN-QIHTFLSGDPKQCRTAEICNTLKTLAA 729
           AGRW+EV K+R  +   G +K PGCSW E KN +IH F +GD    R++EI   LK L  
Sbjct: 493 AGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSEIRQALKQLIE 552

Query: 730 QIRN 733
           ++R+
Sbjct: 553 RLRS 556



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 105/408 (25%), Positives = 183/408 (44%), Gaps = 68/408 (16%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHN------ 90
           +F Q++  N   + +MI  YA  G ++++   + +M +R+ V   S     L        
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRM-RRDGVGPVSFTFSALFKACGAAL 156

Query: 91  ----DKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
                K   A+ +    F  DL+    MI  Y + G L  AR++FD + ++ D   W  +
Sbjct: 157 NMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEM-SERDVVSWTEL 215

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE------- 199
           +  YAK G+   A  L D +P K++V+W +M++GY +NG    A ++F+ M++       
Sbjct: 216 IVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDE 275

Query: 200 ----------------------RD------------VVSWNLMLDGYVELDDLDSAWKFF 225
                                 RD            VV  + ++D Y +    D A+K F
Sbjct: 276 VTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVF 335

Query: 226 QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM---PIR-NVVAWNAMIAAYVQRGQIE 281
           + + E+NV S+ +M+ GYA +GR   A +LF  M    IR N V +  +++A    G +E
Sbjct: 336 EVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVE 395

Query: 282 EAARLFIEMPE-----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISG 335
           +  +LF +M +      +P  +  M+D   R   L+EA  L+  MP + N     A++  
Sbjct: 396 QGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGA 455

Query: 336 YVQNKRMD----EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
              +   D     AN++F K+  + +  + ++   YA  GR +E   L
Sbjct: 456 CRIHGNPDIAQIAANELF-KLEPNGIGNYILLSNIYASAGRWEEVSKL 502



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 164/358 (45%), Gaps = 31/358 (8%)

Query: 99  LFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKED---------TACWNAMVAG 149
           +F ++  P+ F W  MI  Y  +G L ++   +  +  + D         +A + A  A 
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRM--RRDGVGPVSFTFSALFKACGAA 155

Query: 150 Y-AKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLM 208
               +G    A+ +L    + ++   NSM+  Y K G +  A K F+ M ERDVVSW  +
Sbjct: 156 LNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTEL 215

Query: 209 LDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF----------DQ 258
           +  Y +  D++SA   F  +P +++V+W  M++GYA+NGR  EA   F          D+
Sbjct: 216 IVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDE 275

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
           + +  V++  A + A      I + A      P  N V  + +ID Y +    DEA ++ 
Sbjct: 276 VTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVF 335

Query: 319 DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV----VCWNVMIKGYAQCGRMD 374
           + M  +N+ + ++MI GY  + R   A Q+F  +   ++    V +  ++   +  G ++
Sbjct: 336 EVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVE 395

Query: 375 EAINLFRQM-----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
           +   LF +M     V      +  M+    +   +++A+ + + M    N   W AL+
Sbjct: 396 QGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALL 453



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 149/316 (47%), Gaps = 43/316 (13%)

Query: 8   IGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARK 67
           IG   S ++  N  I    K G +  A K+F +MS+++ V++  +I AYAK G +  A  
Sbjct: 171 IGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASG 230

Query: 68  LFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGE 123
           LF+ +P +++V+W +M+ GY  N + KEA E F KM       D  + A +I+   + G 
Sbjct: 231 LFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGA 290

Query: 124 LEKARELFDL-----LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSML 178
           ++ A  + D+          +    +A++  Y+K G+ +EA K+ + M  +N+ S++SM+
Sbjct: 291 VKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMI 350

Query: 179 SGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
            GY  +G  H A + F  M + ++                             N V+++ 
Sbjct: 351 LGYAMHGRAHSALQLFHDMLKTEI---------------------------RPNKVTFIG 383

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVA-----WNAMIAAYVQRGQIEEAARLFIEMP-E 292
           +LS  +  G + + R+LF +M     VA     +  M+    + G +EEA  L   MP E
Sbjct: 384 ILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPME 443

Query: 293 RNPVSWTTMIDGYVRI 308
            N   W  ++ G  RI
Sbjct: 444 PNGGVWGALL-GACRI 458



 Score = 46.2 bits (108), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 16/143 (11%)

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE--LLFKDADPVDVISWNSLIAGYA 532
           +Q+H   I++G     +V   LI M  K      +   L+F   +  +   W ++I GYA
Sbjct: 59  KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYA 118

Query: 533 INGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLV 592
           + G  +E+   +  M  +GV P   TF  +  AC     +D G        +V+A   L+
Sbjct: 119 LQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLG-------KQVHAQTILI 171

Query: 593 EHYA-------CMIDLLSRAGRL 608
             +A        MIDL  + G L
Sbjct: 172 GGFASDLYVGNSMIDLYVKCGFL 194


>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Vitis vinifera]
          Length = 573

 Score =  335 bits (859), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 185/500 (37%), Positives = 274/500 (54%), Gaps = 57/500 (11%)

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV------------SWT 299
           AR +FD +   NV  + AMI AY        A  L+  M  R               S T
Sbjct: 107 ARFIFDHVESPNVYLYTAMITAYASHSDHTSALLLYRNMVRRRRPWPNHFIYPHVLKSCT 166

Query: 300 TMI-DGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV 358
            ++  G  R+      R   +Q P      QTA++  Y++                    
Sbjct: 167 QVVGPGSARMVHCQVLRSGFEQYP----VVQTALLDAYLR-------------------- 202

Query: 359 CWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRR 418
            W+           ++ A  LF +M  +++V+W  MI+GY ++ Q+ +AV +FEEM   R
Sbjct: 203 FWS----------DVESARLLFDEMTERNVVSWTAMISGYTRLGQIGNAVLLFEEM-PER 251

Query: 419 NTVSWNALISGFLQNEFHLDALKIFVLMTQ-------EGKKADHSTLACALSACAHLAAL 471
           +  SWNALI+G+ QN   ++AL +F  M         +G + +  T  C+LSAC H   L
Sbjct: 252 DVPSWNALIAGYTQNGLFMEALSLFRRMIAVEAGAWGQGNRPNQVTAVCSLSACGHTGML 311

Query: 472 QLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGY 531
           +LG+ IH    ++G   D FV N+L+ MY KCG ++ A  +F       + SWNS+I   
Sbjct: 312 RLGKWIHGYVYRNGLGLDSFVSNALVDMYGKCGCLKEARRVFDRTLERSLTSWNSMINCL 371

Query: 532 AINGNATEAIKLFEEMVM--EGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE 589
           A++G +  AI +FEEM+    GV PD VTFIG+L+AC+H GLV+ G   FE MT+ Y IE
Sbjct: 372 ALHGQSQNAISVFEEMMTCGSGVKPDEVTFIGLLNACTHGGLVEKGWLYFELMTQNYGIE 431

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649
           P +EHY C++DLL RAG+ +EA E+V+GM+I+P+  IWG+LL  C++H +  L   +++K
Sbjct: 432 PQIEHYGCLVDLLGRAGQFEEAMEVVRGMRIEPDEVIWGSLLNGCKIHGHTDLAEFSIKK 491

Query: 650 LSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLS 709
           L +++P       +L+N++ E G+WDEV KVR  ++   A K PGCSWIE+ NQ+H F S
Sbjct: 492 LIDMDPNNGGYGIMLANIYGELGKWDEVRKVRKVLKEQNAHKTPGCSWIEIDNQVHQFYS 551

Query: 710 GDPKQCRTAEICNTLKTLAA 729
            D    RT EI NTL++L +
Sbjct: 552 VDKTHPRTEEIYNTLESLIS 571



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 121/487 (24%), Positives = 200/487 (41%), Gaps = 68/487 (13%)

Query: 73  PQRNLVSWNSMIAGY---LHNDKVKEARELFDKM--FRPDLFSWALMITCYTRKGELEKA 127
           PQ  L   NS++A     +H + +K+ +     +   +   +++ L+  C      L  A
Sbjct: 48  PQNQLNLNNSVLALLERCIHLNHLKQLQAFLITLGHAQTHFYAFKLLRFCTLALSNLSYA 107

Query: 128 RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM-----PSKNIVSWNSMLSGYT 182
           R +FD + +  +   + AM+  YA   ++  A  L   M     P  N   +  +L   T
Sbjct: 108 RFIFDHVESP-NVYLYTAMITAYASHSDHTSALLLYRNMVRRRRPWPNHFIYPHVLKSCT 166

Query: 183 K-----NGEMHLASKFFEAMEERDVVSWNLMLDGYVEL-DDLDSAWKFFQKIPEQNVVSW 236
           +     +  M          E+  VV    +LD Y+    D++SA   F ++ E+NVVSW
Sbjct: 167 QVVGPGSARMVHCQVLRSGFEQYPVVQ-TALLDAYLRFWSDVESARLLFDEMTERNVVSW 225

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
             M+SGY R G++  A  LF++MP R+V +WNA+IA Y Q G   EA  LF  M      
Sbjct: 226 TAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEALSLFRRMIAVEAG 285

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHD 356
           +W     G         A   L    +  +      I GYV            + +G   
Sbjct: 286 AW-----GQGNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVYR----------NGLGLDS 330

Query: 357 VVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
            V  N ++  Y +CG + EA  +F + + + + +WN+MI   A   Q  +A+ +FEEM  
Sbjct: 331 FVS-NALVDMYGKCGCLKEARRVFDRTLERSLTSWNSMINCLALHGQSQNAISVFEEM-- 387

Query: 417 RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ 476
                                       +    G K D  T    L+AC H   ++ G  
Sbjct: 388 ----------------------------MTCGSGVKPDEVTFIGLLNACTHGGLVEKGWL 419

Query: 477 IHHLAIKS-GYVNDLFVGNSLITMYAKCGRIQNAELLFKD--ADPVDVISWNSLIAGYAI 533
              L  ++ G    +     L+ +  + G+ + A  + +    +P +VI W SL+ G  I
Sbjct: 420 YFELMTQNYGIEPQIEHYGCLVDLLGRAGQFEEAMEVVRGMRIEPDEVI-WGSLLNGCKI 478

Query: 534 NGNATEA 540
           +G+   A
Sbjct: 479 HGHTDLA 485



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 146/316 (46%), Gaps = 29/316 (9%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHN 90
           VE A  +F +M+++N V++ +MIS Y + G++ +A  LFE+MP+R++ SWN++IAGY  N
Sbjct: 207 VESARLLFDEMTERNVVSWTAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQN 266

Query: 91  DKVKEARELFDKMF-----------RPDLFSWALMITCYTRKGELEKARELFDLLPNKE- 138
               EA  LF +M            RP+  +    ++     G L   + +   +     
Sbjct: 267 GLFMEALSLFRRMIAVEAGAWGQGNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGL 326

Query: 139 --DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEA 196
             D+   NA+V  Y K G   EA+++ D    +++ SWNSM++    +G+   A   FE 
Sbjct: 327 GLDSFVSNALVDMYGKCGCLKEARRVFDRTLERSLTSWNSMINCLALHGQSQNAISVFEE 386

Query: 197 ME------ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-----EQNVVSWVTMLSGYAR 245
           M       + D V++  +L+       ++  W +F+ +      E  +  +  ++    R
Sbjct: 387 MMTCGSGVKPDEVTFIGLLNACTHGGLVEKGWLYFELMTQNYGIEPQIEHYGCLVDLLGR 446

Query: 246 NGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTTM 301
            G+  EA  +   M I  + V W +++      G     E + +  I+M   N      +
Sbjct: 447 AGQFEEAMEVVRGMRIEPDEVIWGSLLNGCKIHGHTDLAEFSIKKLIDMDPNNGGYGIML 506

Query: 302 IDGYVRIAKLDEARRL 317
            + Y  + K DE R++
Sbjct: 507 ANIYGELGKWDEVRKV 522



 Score = 54.3 bits (129), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 81/168 (48%), Gaps = 15/168 (8%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM--- 72
           F  N  +   GK G ++EA ++F +  +++  ++NSMI+  A +G+  +A  +FE+M   
Sbjct: 331 FVSNALVDMYGKCGCLKEARRVFDRTLERSLTSWNSMINCLALHGQSQNAISVFEEMMTC 390

Query: 73  ---PQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGEL 124
               + + V++  ++    H   V++    F+ M       P +  +  ++    R G+ 
Sbjct: 391 GSGVKPDEVTFIGLLNACTHGGLVEKGWLYFELMTQNYGIEPQIEHYGCLVDLLGRAGQF 450

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA----KKLLDAMPS 168
           E+A E+   +  + D   W +++ G    G+ + A    KKL+D  P+
Sbjct: 451 EEAMEVVRGMRIEPDEVIWGSLLNGCKIHGHTDLAEFSIKKLIDMDPN 498



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 62/305 (20%), Positives = 134/305 (43%), Gaps = 35/305 (11%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM--------- 72
           I+   + G++  A+ +F +M +++  ++N++I+ Y +NG   +A  LF +M         
Sbjct: 229 ISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEALSLFRRMIAVEAGAWG 288

Query: 73  --PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEK 126
              + N V+    ++   H   ++  + +   ++R     D F    ++  Y + G L++
Sbjct: 289 QGNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGLGLDSFVSNALVDMYGKCGCLKE 348

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS------KNIVSWNSMLSG 180
           AR +FD    +  T+ WN+M+   A  G    A  + + M +       + V++  +L+ 
Sbjct: 349 ARRVFDRTLERSLTS-WNSMINCLALHGQSQNAISVFEEMMTCGSGVKPDEVTFIGLLNA 407

Query: 181 YTKNGEMHLASKFFEAME-----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-EQNVV 234
            T  G +     +FE M      E  +  +  ++D        + A +  + +  E + V
Sbjct: 408 CTHGGLVEKGWLYFELMTQNYGIEPQIEHYGCLVDLLGRAGQFEEAMEVVRGMRIEPDEV 467

Query: 235 SWVTMLSGYARNGRM----LEARRLFDQMPIRNVVAWNAMIA-AYVQRGQIEEAARLFIE 289
            W ++L+G   +G         ++L D  P  N   +  M+A  Y + G+ +E  ++   
Sbjct: 468 IWGSLLNGCKIHGHTDLAEFSIKKLIDMDP--NNGGYGIMLANIYGELGKWDEVRKVRKV 525

Query: 290 MPERN 294
           + E+N
Sbjct: 526 LKEQN 530


>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Brachypodium distachyon]
          Length = 868

 Score =  335 bits (859), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 206/651 (31%), Positives = 335/651 (51%), Gaps = 57/651 (8%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EE 199
           NAM++   + G    A K+   MP +++ SWN M+ GY K G +  A   +  M      
Sbjct: 133 NAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGAR 192

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG----YARNGRMLEARRL 255
            DV ++  +L     + DL    +    +    +   V +L+     YA+ G +  AR++
Sbjct: 193 PDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARKV 252

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKL 311
           FD M + + ++WNAMIA + +  + E    LF+ M     E N ++ T++      ++ L
Sbjct: 253 FDGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSDL 312

Query: 312 DEARRLLDQMPYKNIAAQTA----MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367
           D A+ +      +  A   A    +I  Y    RM EA  +F ++ T D + W  MI GY
Sbjct: 313 DFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGY 372

Query: 368 AQCGRMDEAINLFRQM----VNKD-----------------------------------I 388
            + G  D+A+ ++  M    V+ D                                   I
Sbjct: 373 EKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFIRYI 432

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
           V  N ++  YA+ + ++ A+++F+ M   ++ +SW+++I+GF  N  + +AL  F  M  
Sbjct: 433 VVANALVEMYAKSKIIEKAIEVFKYM-PDKDVISWSSMIAGFCFNHKNFEALYYFRHMLA 491

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
           +  K +  T   AL+ACA   +L+ G++IH   ++ G  ++ +V N+L+ +Y KCG+   
Sbjct: 492 D-VKPNSVTFIAALAACAATGSLRCGKEIHAHVLRQGIASEGYVPNALLDLYVKCGQTGY 550

Query: 509 AELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
           A   F      DV+SWN ++AG+  +G+   A+  F EM+  G  PD VTF+ +L  CS 
Sbjct: 551 AWAQFGAHGTKDVVSWNIMLAGFVAHGHGDIALSFFNEMLETGEHPDEVTFVALLCGCSR 610

Query: 569 VGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWG 628
            G+V  G +LF  MTE Y+I P ++HYACM+DLLSR GRL E +  +  M I P+A +WG
Sbjct: 611 AGMVSQGWELFHSMTEKYSIVPNLKHYACMVDLLSRVGRLTEGYNFINRMPITPDAAVWG 670

Query: 629 TLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688
            LL  CR+H+NI+LG +A + + ELEP     + LLS+++A+AG W EV KVR +M   G
Sbjct: 671 ALLNGCRIHRNIELGELAAKIVLELEPNDAGYHVLLSDLYADAGMWAEVSKVRKTMRVKG 730

Query: 689 AQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNTPLAVI 739
            +   GCSW+EVK  IH FL+ D    +  EI + L  +  +++ +  A +
Sbjct: 731 LEHDYGCSWVEVKGAIHAFLTDDESHPQIKEINDVLDGIYERMKASGFAPV 781



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 144/569 (25%), Positives = 255/569 (44%), Gaps = 75/569 (13%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----R 105
           N+M+S   + G    A K+F +MP+R++ SWN M+ GY     ++EA +L+ +M     R
Sbjct: 133 NAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGAR 192

Query: 106 PDLFSWALMITCYTRKGELEKAREL------FDLLPNKEDTACWNAMVAGYAKIGNYNEA 159
           PD++++  ++       +L   RE+      F L     +    NA+V  YAK G+   A
Sbjct: 193 PDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGL---GVEVDVLNALVTMYAKCGDVEAA 249

Query: 160 KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE----- 214
           +K+ D M   + +SWN+M++G+ +N E     + F  M E D V  NLM    V      
Sbjct: 250 RKVFDGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLE-DEVEPNLMTITSVTVASGL 308

Query: 215 LDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAM 270
           L DLD A +      ++   + V    +++  Y+  GRM EA  +F +M  R+ ++W AM
Sbjct: 309 LSDLDFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAM 368

Query: 271 IAAYVQRGQIEEAARLFIEMPERN----PVSWTTMIDGYVRIAKLDEARRLLDQMPYKN- 325
           I+ Y + G  ++A  ++  M   N     V+  + +     + +LD   +L +    K  
Sbjct: 369 ISGYEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGF 428

Query: 326 ---IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
              I    A++  Y ++K +++A ++F  +   DV+ W+ MI G+    +  EA+  FR 
Sbjct: 429 IRYIVVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRH 488

Query: 383 M---VNKDIVTW-----------------------------------NTMIAGYAQIRQM 404
           M   V  + VT+                                   N ++  Y +  Q 
Sbjct: 489 MLADVKPNSVTFIAALAACAATGSLRCGKEIHAHVLRQGIASEGYVPNALLDLYVKCGQT 548

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSA 464
             A   F   G  ++ VSWN +++GF+ +     AL  F  M + G+  D  T    L  
Sbjct: 549 GYAWAQFGAHGT-KDVVSWNIMLAGFVAHGHGDIALSFFNEMLETGEHPDEVTFVALLCG 607

Query: 465 CAHLAALQLGRQI-HHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--DV 521
           C+    +  G ++ H +  K   V +L     ++ + ++ GR+      F +  P+  D 
Sbjct: 608 CSRAGMVSQGWELFHSMTEKYSIVPNLKHYACMVDLLSRVGRLTEG-YNFINRMPITPDA 666

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVME 550
             W +L+ G  I+ N  E  +L  ++V+E
Sbjct: 667 AVWGALLNGCRIHRN-IELGELAAKIVLE 694



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 114/477 (23%), Positives = 217/477 (45%), Gaps = 75/477 (15%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQM----SQKNTVTY--------------------- 49
           VF+ N  +   GK+G +EEA+ ++ +M    ++ +  T+                     
Sbjct: 160 VFSWNVMVGGYGKAGFLEEALDLYHRMLWAGARPDVYTFPCVLRSCGGVPDLTMGREVHA 219

Query: 50  --------------NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKE 95
                         N++++ YAK G V  ARK+F+ M   + +SWN+MIAG+  N + + 
Sbjct: 220 HVLRFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLTDCISWNAMIAGHFENHECEA 279

Query: 96  ARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVA 148
             ELF  M      P+L +   +        +L+ A+E+  L   +    D A  N+++ 
Sbjct: 280 GLELFLHMLEDEVEPNLMTITSVTVASGLLSDLDFAKEIHALAVKRGFATDVAFCNSLIQ 339

Query: 149 GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLM 208
            Y+ +G   EA  +   M +++ +SW +M+SGY KNG    A + +  ME  +V   ++ 
Sbjct: 340 MYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDVT 399

Query: 209 -------------LDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRL 255
                        LD  ++L +L ++  F + I   N      ++  YA++  + +A  +
Sbjct: 400 VASALAACASLGRLDVGIKLHELATSKGFIRYIVVAN-----ALVEMYAKSKIIEKAIEV 454

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM---PERNPVSWTTMIDGYVRIAKLD 312
           F  MP ++V++W++MIA +    +  EA   F  M    + N V++   +        L 
Sbjct: 455 FKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHMLADVKPNSVTFIAALAACAATGSLR 514

Query: 313 EARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
             + +   +  + IA++     A++  YV+  +   A   F   GT DVV WN+M+ G+ 
Sbjct: 515 CGKEIHAHVLRQGIASEGYVPNALLDLYVKCGQTGYAWAQFGAHGTKDVVSWNIMLAGFV 574

Query: 369 QCGRMDEAINLFRQMV----NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
             G  D A++ F +M+    + D VT+  ++ G ++   +    ++F  M ++ + V
Sbjct: 575 AHGHGDIALSFFNEMLETGEHPDEVTFVALLCGCSRAGMVSQGWELFHSMTEKYSIV 631



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 156/359 (43%), Gaps = 35/359 (9%)

Query: 29  GRVEEAIKIFSQMSQKNTVTY----NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMI 84
           GR++  IK+    + K  + Y    N+++  YAK+  +  A ++F+ MP ++++SW+SMI
Sbjct: 411 GRLDVGIKLHELATSKGFIRYIVVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMI 470

Query: 85  AGYLHNDKVKEARELFDKMF---RPDLFSWALMITCYTRKGELEKARELFDLLPNK---E 138
           AG+  N K  EA   F  M    +P+  ++   +      G L   +E+   +  +    
Sbjct: 471 AGFCFNHKNFEALYYFRHMLADVKPNSVTFIAALAACAATGSLRCGKEIHAHVLRQGIAS 530

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM- 197
           +    NA++  Y K G    A     A  +K++VSWN ML+G+  +G   +A  FF  M 
Sbjct: 531 EGYVPNALLDLYVKCGQTGYAWAQFGAHGTKDVVSWNIMLAGFVAHGHGDIALSFFNEML 590

Query: 198 ---EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ-----NVVSWVTMLSGYARNGRM 249
              E  D V++  +L G      +   W+ F  + E+     N+  +  M+   +R GR+
Sbjct: 591 ETGEHPDEVTFVALLCGCSRAGMVSQGWELFHSMTEKYSIVPNLKHYACMVDLLSRVGRL 650

Query: 250 LEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTTMIDGY 305
            E     ++MPI  +   W A++        I   E AA++ +E+   +      + D Y
Sbjct: 651 TEGYNFINRMPITPDAAVWGALLNGCRIHRNIELGELAAKIVLELEPNDAGYHVLLSDLY 710

Query: 306 VRIAKLDEARRLLDQMPYKNI------------AAQTAMISGYVQNKRMDEANQIFDKI 352
                  E  ++   M  K +             A  A ++    + ++ E N + D I
Sbjct: 711 ADAGMWAEVSKVRKTMRVKGLEHDYGCSWVEVKGAIHAFLTDDESHPQIKEINDVLDGI 769



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 141/342 (41%), Gaps = 57/342 (16%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRN-- 76
           N  I      GR+ EA  +FS+M  ++ +++ +MIS Y KNG  + A +++  M   N  
Sbjct: 335 NSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVS 394

Query: 77  -------------------------------------LVSWNSMIAGYLHNDKVKEAREL 99
                                                +V  N+++  Y  +  +++A E+
Sbjct: 395 PDDVTVASALAACASLGRLDVGIKLHELATSKGFIRYIVVANALVEMYAKSKIIEKAIEV 454

Query: 100 FDKMFRPDLFSWALMIT--CYTRKG--ELEKARELF-DLLPNKED--TACWNAMVAGYAK 152
           F  M   D+ SW+ MI   C+  K    L   R +  D+ PN      A       G  +
Sbjct: 455 FKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHMLADVKPNSVTFIAALAACAATGSLR 514

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY 212
            G    A  L   + S+  V  N++L  Y K G+   A   F A   +DVVSWN+ML G+
Sbjct: 515 CGKEIHAHVLRQGIASEGYVP-NALLDLYVKCGQTGYAWAQFGAHGTKDVVSWNIMLAGF 573

Query: 213 VELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARNGRMLEARRLFDQMP-----IRN 263
           V     D A  FF ++ E     + V++V +L G +R G + +   LF  M      + N
Sbjct: 574 VAHGHGDIALSFFNEMLETGEHPDEVTFVALLCGCSRAGMVSQGWELFHSMTEKYSIVPN 633

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMIDG 304
           +  +  M+    + G++ E       MP   +   W  +++G
Sbjct: 634 LKHYACMVDLLSRVGRLTEGYNFINRMPITPDAAVWGALLNG 675



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 13/137 (9%)

Query: 490 LFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549
           L +GN++++M  + G   +A  +F      DV SWN ++ GY   G   EA+ L+  M+ 
Sbjct: 129 LRLGNAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLW 188

Query: 550 EGVAPDPVTFIGVLSACSHVGLVDGGLKL------FECMTEVYAIEPLVEHYACMIDLLS 603
            G  PD  TF  VL +C  V  +  G ++      F    EV  +  LV  YA       
Sbjct: 189 AGARPDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYA------- 241

Query: 604 RAGRLDEAFEMVKGMKI 620
           + G ++ A ++  GM +
Sbjct: 242 KCGDVEAARKVFDGMSL 258


>gi|357478575|ref|XP_003609573.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510628|gb|AES91770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 665

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 209/655 (31%), Positives = 325/655 (49%), Gaps = 56/655 (8%)

Query: 105 RPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLD 164
           RP L      I    R G +  AR+LFD +P + DT  WNAM+  Y+++G Y +   L D
Sbjct: 2   RPCLIRATSEIVSLARSGRICHARKLFDEMPER-DTVAWNAMLTAYSRLGLYQQTFDLFD 60

Query: 165 AM-----PSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSWNLMLDGYVEL 215
           +M        +  S+++ ++      ++   +K    +     +  +   N ++D Y + 
Sbjct: 61  SMRRISDSKPDNFSYSAAINSCAGASDIRFGTKLHSLVVVSGYQSSLPVANALIDMYGKC 120

Query: 216 DDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
            + + A K F ++   N V+W ++L  YA   R   A  +F  MP +  +AWN +IAA+ 
Sbjct: 121 FNPNDARKVFDEMNYSNEVTWCSLLFAYANTCRFDMAFEIFRSMPEKVEIAWNIIIAAHA 180

Query: 276 QRGQIEEAARLFIEMPER--NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAM- 332
           + G++E    LF EM E    P  WT           ++     +           TAM 
Sbjct: 181 RCGEVEACLHLFKEMCENLYQPDQWTFSALMSACTESMESLHGCMMHCFVIKSGWSTAME 240

Query: 333 -----ISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD 387
                +S Y + +   +A ++F+  G  + V WN +I  + + G   +A+  F+Q   K+
Sbjct: 241 VNNSIVSFYAKLECHGDAVKVFNSGGAFNQVSWNAIIDAHMKVGDTQKALLAFQQAPEKN 300

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMT 447
           IV+W +MI GY +    D A+ +F +M  +RN+   + L++G +                
Sbjct: 301 IVSWTSMIVGYTRNGNGDLALSLFLDM--KRNSFQLDDLVAGAV---------------- 342

Query: 448 QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
                         L ACA LA L  G+ +H   I  G    LFVGNSLI MYAKCG I+
Sbjct: 343 --------------LHACASLAILVHGKMVHSCIIHLGLDKYLFVGNSLINMYAKCGDIE 388

Query: 508 NAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
            ++L  +  +  D++SWNS++  + +NG   EAI +F EMV  GV PD VTF G+L  CS
Sbjct: 389 GSKLALRGINDKDLVSWNSMLFAFGLNGRGNEAICMFREMVASGVRPDEVTFTGLLMTCS 448

Query: 568 HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV----KGMKIKPN 623
           H+GL+D G   F+ M+  Y +   ++H ACM+D+L R G + EA  +     K  + K N
Sbjct: 449 HLGLIDEGFAFFQSMSLEYGLVQGMDHVACMVDMLGRGGYVAEAQSLARKYSKTSRDKTN 508

Query: 624 AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVS 683
           +     LLGAC  H ++  G    E +  LEP+K   Y LLSNM+  +G+W E E VR  
Sbjct: 509 S--CEVLLGACHAHGDLGTGSSVGEYVKNLEPKKEVGYVLLSNMYCASGKWKEAEMVRKE 566

Query: 684 MEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNTPLAV 738
           M   G +K PGCSWIE++N +  F+SG+      A+I   L  L  ++R+T + V
Sbjct: 567 MMDQGVKKVPGCSWIEIRNVVTAFVSGNNLYPCMADISKILYFLELEMRHTRMIV 621



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 158/630 (25%), Positives = 275/630 (43%), Gaps = 115/630 (18%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----- 105
           S I + A++GR+  ARKLF++MP+R+ V+WN+M+  Y      ++  +LFD M R     
Sbjct: 10  SEIVSLARSGRICHARKLFDEMPERDTVAWNAMLTAYSRLGLYQQTFDLFDSMRRISDSK 69

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLL---PNKEDTACWNAMVAGYAKIGNYNEAKKL 162
           PD FS++  I       ++    +L  L+     +      NA++  Y K  N N+A+K+
Sbjct: 70  PDNFSYSAAINSCAGASDIRFGTKLHSLVVVSGYQSSLPVANALIDMYGKCFNPNDARKV 129

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAW 222
            D M   N V+W S+L  Y       +A + F +M E+  ++WN+++  +    ++++  
Sbjct: 130 FDEMNYSNEVTWCSLLFAYANTCRFDMAFEIFRSMPEKVEIAWNIIIAAHARCGEVEACL 189

Query: 223 KFFQKI------PEQNVVS--------------------------WVT-------MLSGY 243
             F+++      P+Q   S                          W T       ++S Y
Sbjct: 190 HLFKEMCENLYQPDQWTFSALMSACTESMESLHGCMMHCFVIKSGWSTAMEVNNSIVSFY 249

Query: 244 ARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMID 303
           A+     +A ++F+     N V+WNA+I A+++ G  ++A   F + PE+N VSWT+MI 
Sbjct: 250 AKLECHGDAVKVFNSGGAFNQVSWNAIIDAHMKVGDTQKALLAFQQAPEKNIVSWTSMIV 309

Query: 304 GYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV----- 358
           GY R    D A  L   M  +N      +++G V +     A  +  K+  H  +     
Sbjct: 310 GYTRNGNGDLALSLFLDMK-RNSFQLDDLVAGAVLHACASLAILVHGKM-VHSCIIHLGL 367

Query: 359 -----CWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEE 413
                  N +I  YA+CG ++ +    R + +KD+V+WN+M+  +    + ++A+ +F E
Sbjct: 368 DKYLFVGNSLINMYAKCGDIEGSKLALRGINDKDLVSWNSMLFAFGLNGRGNEAICMFRE 427

Query: 414 M---GKRRNTVSWNALISGFLQNEFHL----DALKIFVLMTQE-GKKADHSTLACALSAC 465
           M   G R + V++    +G L    HL    +    F  M+ E G       +AC +   
Sbjct: 428 MVASGVRPDEVTF----TGLLMTCSHLGLIDEGFAFFQSMSLEYGLVQGMDHVACMVD-- 481

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR--IQNAELLF---------- 513
                  LGR         GYV +     SL   Y+K  R    + E+L           
Sbjct: 482 ------MLGR--------GGYVAE---AQSLARKYSKTSRDKTNSCEVLLGACHAHGDLG 524

Query: 514 ---------KDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP-VTFIGVL 563
                    K+ +P   + +  L   Y  +G   EA  + +EM+ +GV   P  ++I + 
Sbjct: 525 TGSSVGEYVKNLEPKKEVGYVLLSNMYCASGKWKEAEMVRKEMMDQGVKKVPGCSWIEIR 584

Query: 564 SACSHVGLVDGGLKLFECMTEVYAIEPLVE 593
           +    V     G  L+ CM ++  I   +E
Sbjct: 585 NV---VTAFVSGNNLYPCMADISKILYFLE 611



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 108/431 (25%), Positives = 191/431 (44%), Gaps = 48/431 (11%)

Query: 4   SLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQM----SQKNTVTYNSMISAYAKN 59
           S++ I +     F+ +  I     +  +    K+ S +     Q +    N++I  Y K 
Sbjct: 61  SMRRISDSKPDNFSYSAAINSCAGASDIRFGTKLHSLVVVSGYQSSLPVANALIDMYGKC 120

Query: 60  GRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYT 119
              NDARK+F++M   N V+W S++  Y +  +   A E+F  M      +W ++I  + 
Sbjct: 121 FNPNDARKVFDEMNYSNEVTWCSLLFAYANTCRFDMAFEIFRSMPEKVEIAWNIIIAAHA 180

Query: 120 RKGELEKARELF-DLLPN--KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV--SW 174
           R GE+E    LF ++  N  + D   ++A+++   +       + L   M    ++   W
Sbjct: 181 RCGEVEACLHLFKEMCENLYQPDQWTFSALMSACTE-----SMESLHGCMMHCFVIKSGW 235

Query: 175 -------NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK 227
                  NS++S Y K      A K F +    + VSWN ++D ++++ D   A   FQ+
Sbjct: 236 STAMEVNNSIVSFYAKLECHGDAVKVFNSGGAFNQVSWNAIIDAHMKVGDTQKALLAFQQ 295

Query: 228 IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF 287
            PE+N+VSW +M+ GY RNG    A  LF  M  RN    + ++A  V    +   A L 
Sbjct: 296 APEKNIVSWTSMIVGYTRNGNGDLALSLFLDMK-RNSFQLDDLVAGAV----LHACASLA 350

Query: 288 IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347
           I +  +       M+   +    LD           K +    ++I+ Y +   ++ +  
Sbjct: 351 ILVHGK-------MVHSCIIHLGLD-----------KYLFVGNSLINMYAKCGDIEGSKL 392

Query: 348 IFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQ 403
               I   D+V WN M+  +   GR +EAI +FR+M    V  D VT+  ++   + +  
Sbjct: 393 ALRGINDKDLVSWNSMLFAFGLNGRGNEAICMFREMVASGVRPDEVTFTGLLMTCSHLGL 452

Query: 404 MDDAVKIFEEM 414
           +D+    F+ M
Sbjct: 453 IDEGFAFFQSM 463



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 180/393 (45%), Gaps = 34/393 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I   GK     +A K+F +M+  N VT+ S++ AYA   R + A ++F  MP++  +
Sbjct: 111 NALIDMYGKCFNPNDARKVFDEMNYSNEVTWCSLLFAYANTCRFDMAFEIFRSMPEKVEI 170

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSW-ALMITCYTRKGELEKARELFDL 133
           +WN +IA +    +V+    LF +M    ++PD +++ ALM  C      L        +
Sbjct: 171 AWNIIIAAHARCGEVEACLHLFKEMCENLYQPDQWTFSALMSACTESMESLHGCMMHCFV 230

Query: 134 LPNKEDTA--CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
           + +   TA    N++V+ YAK+  + +A K+ ++  + N VSWN+++  + K G+   A 
Sbjct: 231 IKSGWSTAMEVNNSIVSFYAKLECHGDAVKVFNSGGAFNQVSWNAIIDAHMKVGDTQKAL 290

Query: 192 KFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR------ 245
             F+   E+++VSW  M+ GY    + D A   F  + ++N      +++G         
Sbjct: 291 LAFQQAPEKNIVSWTSMIVGYTRNGNGDLALSLFLDM-KRNSFQLDDLVAGAVLHACASL 349

Query: 246 ----NGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTM 301
               +G+M+ +  +   +  + +   N++I  Y + G IE +      + +++ VSW +M
Sbjct: 350 AILVHGKMVHSCIIHLGLD-KYLFVGNSLINMYAKCGDIEGSKLALRGINDKDLVSWNSM 408

Query: 302 IDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKR----MDEANQIFDKI----- 352
           +  +    + +EA  +  +M    +       +G +        +DE    F  +     
Sbjct: 409 LFAFGLNGRGNEAICMFREMVASGVRPDEVTFTGLLMTCSHLGLIDEGFAFFQSMSLEYG 468

Query: 353 ---GTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
              G   V C   M+    + G + EA +L R+
Sbjct: 469 LVQGMDHVAC---MVDMLGRGGYVAEAQSLARK 498


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  335 bits (858), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 188/544 (34%), Positives = 288/544 (52%), Gaps = 57/544 (10%)

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-----ER-NPV 296
           Y +  R  +ARR+FD+MP R+ VAWNA++A Y + G    A    + M      ER + V
Sbjct: 61  YFKCRRPADARRVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSV 120

Query: 297 SWTTMIDGYVRIAKLDEARRL--------LDQMPYKNIAAQTAMISGYVQNKRMDEANQI 348
           +  +++        L   R +        LD++    +   TA++  Y +   ++ A  +
Sbjct: 121 TLVSVLPACADARALHACREVHAFALRAGLDEL----VNVSTAVLDAYCKCGAVEAARAV 176

Query: 349 FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV------------------------ 384
           FD +   + V WN MI GYA  G   EA+ LF +MV                        
Sbjct: 177 FDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYL 236

Query: 385 ---------------NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
                          + ++   N +I  YA+ ++ D A ++F E+G ++  +SWNA+I G
Sbjct: 237 DEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILG 296

Query: 430 FLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND 489
           F QNE   DA ++F  M  E  + D  TL   + A A ++     R IH  +I+     D
Sbjct: 297 FTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQD 356

Query: 490 LFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549
           ++V  +LI MY+KCGR+  A  LF  A    VI+WN++I GY  +G    A++LFEEM  
Sbjct: 357 VYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKG 416

Query: 550 EGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLD 609
            G  P+  TF+ VL+ACSH GLVD G K F  M + Y +EP +EHY  M+DLL RAG+LD
Sbjct: 417 TGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLD 476

Query: 610 EAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHA 669
           EA+  +K M I+P   ++G +LGAC++H+N++L   + + + EL P++   + LL+N++A
Sbjct: 477 EAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYA 536

Query: 670 EAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAA 729
            A  W +V +VR +ME  G QK PG S I++KN++HTF SG        +I   L  L  
Sbjct: 537 NASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYARLAKLIE 596

Query: 730 QIRN 733
           +I++
Sbjct: 597 EIKD 600



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 114/405 (28%), Positives = 188/405 (46%), Gaps = 38/405 (9%)

Query: 46  TVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM-- 103
           ++   ++ + Y K  R  DAR++F++MP R+ V+WN+++AGY  N     A E   +M  
Sbjct: 51  SIASTALANMYFKCRRPADARRVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQG 110

Query: 104 ----FRPDLFSWALMITCYTRKGELEKAREL--FDLLPNKEDTA-CWNAMVAGYAKIGNY 156
                RPD  +   ++        L   RE+  F L    ++      A++  Y K G  
Sbjct: 111 EEGGERPDSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAV 170

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM--EERDVVSWNLM--LDGY 212
             A+ + D MP +N VSWN+M+ GY  NG    A   F  M  E  DV   +++  L   
Sbjct: 171 EAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQAC 230

Query: 213 VELDDLDSAWKFFQKIPEQNVVSWVT----MLSGYARNGRMLEARRLFDQMPIRNV-VAW 267
            EL  LD   +  + +    + S V+    +++ YA+  R   A ++F+++  +   ++W
Sbjct: 231 GELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISW 290

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERN--PVSWT--TMIDGYVRIAKLDEARRL------ 317
           NAMI  + Q    E+A RLF  M   N  P S+T  ++I     I+   +AR +      
Sbjct: 291 NAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIR 350

Query: 318 --LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
             LDQ    ++   TA+I  Y +  R+  A ++FD      V+ WN MI GY   G    
Sbjct: 351 HQLDQ----DVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQA 406

Query: 376 AINLFRQMVN----KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
           A+ LF +M       +  T+ +++A  +    +D+  K F  M K
Sbjct: 407 AVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKK 451



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 164/380 (43%), Gaps = 62/380 (16%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR---- 105
            +++ AY K G V  AR +F+ MP RN VSWN+MI GY  N    EA  LF +M +    
Sbjct: 158 TAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVD 217

Query: 106 -PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKK 161
             D    A +  C    G L++ R + +LL       + +  NA++  YAK    + A +
Sbjct: 218 VTDASVLAALQAC-GELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQ 276

Query: 162 LLDAMPSKNI-VSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL----- 215
           + + + +K   +SWN+M+ G+T+N     A + F  M+  +V   +  L   +       
Sbjct: 277 VFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADIS 336

Query: 216 DDLDSAWKFFQKIP---EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIA 272
           D L + W     I    +Q+V     ++  Y++ GR+  ARRLFD    R+V+ WNAMI 
Sbjct: 337 DPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIH 396

Query: 273 AYVQRGQIEEAARLFIEMP----------------------------------------E 292
            Y   G  + A  LF EM                                         E
Sbjct: 397 GYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLE 456

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRM---DEANQI 348
                + TM+D   R  KLDEA   +  MP +  I+   AM+     +K +   +E+ QI
Sbjct: 457 PGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQI 516

Query: 349 FDKIGTHDVVCWNVMIKGYA 368
             ++G  + V   ++   YA
Sbjct: 517 IFELGPEEGVYHVLLANIYA 536



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 16/183 (8%)

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
           T    L  CA  A L  GR +H      G  ++     +L  MY KC R  +A  +F   
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRM 77

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVME--GVAPDPVTFIGVLSACSHVGLVDG 574
              D ++WN+++AGYA NG  + A++    M  E  G  PD VT + VL AC+       
Sbjct: 78  PSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADA----- 132

Query: 575 GLKLFECMTEVYA------IEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWG 628
             +      EV+A      ++ LV     ++D   + G ++ A  +   M ++ N+  W 
Sbjct: 133 --RALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVR-NSVSWN 189

Query: 629 TLL 631
            ++
Sbjct: 190 AMI 192



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 9/137 (6%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR----NL 77
           I    K GRV  A ++F     ++ +T+N+MI  Y  +G    A +LFE+M       N 
Sbjct: 364 IDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNE 423

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFD 132
            ++ S++A   H   V E ++ F  M       P +  +  M+    R G+L++A     
Sbjct: 424 TTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIK 483

Query: 133 LLPNKEDTACWNAMVAG 149
            +P +   + + AM+  
Sbjct: 484 NMPIEPGISVYGAMLGA 500


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  335 bits (858), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 212/751 (28%), Positives = 366/751 (48%), Gaps = 86/751 (11%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF- 109
           +++  Y   G V +A+KLFE+MP  N+VSW S++ GY  +    E   ++ +M +  +  
Sbjct: 236 ALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSG 295

Query: 110 SWALMITCYTRKGELEKARELFDLLPN------KEDTACWNAMVAGYAKIGNYNEAKKLL 163
           +     T  +  G LE     + +L +      ++  +  N++++ ++   +  EA  + 
Sbjct: 296 NQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVF 355

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE-------------------RDVVS 204
           D M   +I+SWN+M+S Y  +G    + + F  M                      D + 
Sbjct: 356 DHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLK 415

Query: 205 WNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV 264
           W   + G V    LDS           NV    T+L+ Y+  GR  +A  +F  M  R++
Sbjct: 416 WGRGIHGLVVKLGLDS-----------NVCICNTLLTLYSEAGRSEDAELVFQAMTERDL 464

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPE-----------------RNP------------ 295
           ++WN+M+A YVQ G+  +  ++  E+ +                  NP            
Sbjct: 465 ISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHAL 524

Query: 296 ----------VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
                     +    ++  Y ++  + EA+++L  MP  +     A+I G+ +N+  +EA
Sbjct: 525 IIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEA 584

Query: 346 NQIFDKIGTHDVVC-WNVMIKGYAQCGRMDEAI--------NLFRQMVNKDIVTWNTMIA 396
            + +  I    +   +  M+     C   D+ +        ++       D    N++I 
Sbjct: 585 VKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLIT 644

Query: 397 GYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHS 456
            YA+   ++ +  IF+ +G + + ++WNA+++    +    +ALKIF  M   G   D  
Sbjct: 645 MYAKCGDLNSSNYIFDGLGNK-SPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQF 703

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
           + +  L+A A+LA L+ G+Q+H L IK G+ +DL V N+ + MY KCG + +   +    
Sbjct: 704 SFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQP 763

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGL 576
                +SWN LI+ +A +G   +A + F EM+  G  PD VTF+ +LSAC+H GLVD GL
Sbjct: 764 INRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGL 823

Query: 577 KLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRM 636
             ++ MT  + + P +EH  C+IDLL R+GRL  A   +K M + PN   W +LL ACR+
Sbjct: 824 AYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRI 883

Query: 637 HQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCS 696
           H N++L R   E L EL+P   S Y L SN+ A +G+W++VE +R  M  +  +KQP CS
Sbjct: 884 HGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACS 943

Query: 697 WIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
           W+++K+++H+F  G+    + + I   L  L
Sbjct: 944 WVKLKDKVHSFGMGEKYHPQASRISAKLGEL 974



 Score =  214 bits (545), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 172/677 (25%), Positives = 317/677 (46%), Gaps = 79/677 (11%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----R 105
           N++I+ Y+K G +  AR +F++M  RN  SW++M++GY+     +EA  LF +M+     
Sbjct: 133 NTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVE 192

Query: 106 PDLFSWALMITCYTRKGEL-EKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKK 161
           P+ F  A +IT  +R G + ++  ++   +       D     A+V  Y  IG    A+K
Sbjct: 193 PNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQK 252

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV-----------VSWNLMLD 210
           L + MP  N+VSW S++ GY+ +G        ++ M +  V            S  L+ D
Sbjct: 253 LFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLED 312

Query: 211 ---GYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
              GY  L  +   + F   +   N  S ++M S ++    + EA  +FD M   ++++W
Sbjct: 313 QVLGYQVLGHIIQ-YGFEDSVSVAN--SLISMFSSFS---SVEEACYVFDHMNECDIISW 366

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPE-RNPVSWTTMIDGYVRIAKLDEAR--RLLDQMPYK 324
           NAMI+AY   G   E+ R F  M    N  + TT+       + +D  +  R +  +  K
Sbjct: 367 NAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVK 426

Query: 325 -----NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
                N+     +++ Y +  R ++A  +F  +   D++ WN M+  Y Q G+  + + +
Sbjct: 427 LGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKI 486

Query: 380 FRQMV---------------------------------------NKDIVTWNTMIAGYAQ 400
             +++                                       +  ++  N ++  Y +
Sbjct: 487 LAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGK 546

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
           +  M +A K+ + M  + + V+WNALI G  +NE   +A+K + L+ ++G  A++ T+  
Sbjct: 547 LGMMMEAKKVLQTM-PQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVS 605

Query: 461 ALSAC-AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
            L AC A    L+ G  IH   + +G+ +D +V NSLITMYAKCG + ++  +F      
Sbjct: 606 VLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNK 665

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
             I+WN+++A  A +G   EA+K+F EM   GV  D  +F G L+A +++ +++ G +L 
Sbjct: 666 SPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLH 725

Query: 580 ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
             + ++   E  +      +D+  + G + +  +M+    I  +   W  L+ A   H  
Sbjct: 726 GLVIKL-GFESDLHVTNAAMDMYGKCGEMHDVLKMLP-QPINRSRLSWNILISAFARHGC 783

Query: 640 IKLGRIAVEKLSELEPQ 656
            +  R    ++ +L P+
Sbjct: 784 FQKARETFHEMLKLGPK 800



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 120/484 (24%), Positives = 217/484 (44%), Gaps = 88/484 (18%)

Query: 171 IVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI-- 228
           I   N++++ Y+K G +  A   F+ M  R+  SW+ ML GYV +   + A   F ++  
Sbjct: 129 IFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWG 188

Query: 229 --PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-----NVVAWNAMIAAYVQRGQIE 281
              E N     ++++  +R+G M +         ++     +V    A++  Y   G + 
Sbjct: 189 LGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVY 248

Query: 282 EAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ------------ 329
            A +LF EMP+ N VSWT+++ GY       E   +  +M  + ++              
Sbjct: 249 NAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCG 308

Query: 330 ---------------------------TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNV 362
                                       ++IS +     ++EA  +FD +   D++ WN 
Sbjct: 309 LLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNA 368

Query: 363 MIKGYAQCGRMDEAINLFRQM--------------------------------------- 383
           MI  YA  G   E++  F  M                                       
Sbjct: 369 MISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLG 428

Query: 384 VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
           ++ ++   NT++  Y++  + +DA  +F+ M   R+ +SWN++++ ++Q+   LD LKI 
Sbjct: 429 LDSNVCICNTLLTLYSEAGRSEDAELVFQAM-TERDLISWNSMMACYVQDGKCLDGLKIL 487

Query: 444 VLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
             + Q GK  +H T A AL+AC++   L   + +H L I +G+ + L VGN+L+TMY K 
Sbjct: 488 AELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKL 547

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
           G +  A+ + +     D ++WN+LI G+A N    EA+K ++ +  +G+  + +T + VL
Sbjct: 548 GMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVL 607

Query: 564 SACS 567
            ACS
Sbjct: 608 GACS 611



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 141/619 (22%), Positives = 250/619 (40%), Gaps = 145/619 (23%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ---- 74
           N  I+       VEEA  +F  M++ + +++N+MISAYA +G   ++ + F  M      
Sbjct: 336 NSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNE 395

Query: 75  -----------------------------------RNLVSWNSMIAGYLHNDKVKEAREL 99
                                               N+   N+++  Y    + ++A  +
Sbjct: 396 TNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELV 455

Query: 100 FDKMFRPDLFSWALMITCYTRKGE-LEKARELFDLLPNKED----------TAC------ 142
           F  M   DL SW  M+ CY + G+ L+  + L +LL   +            AC      
Sbjct: 456 FQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECL 515

Query: 143 ---------------------WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
                                 NA+V  Y K+G   EAKK+L  MP  + V+WN+++ G+
Sbjct: 516 IESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGH 575

Query: 182 TKNGEMHLASKFFEAMEERDV-VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV--- 237
            +N E + A K ++ + E+ +  ++  M+         D   K    I    V++     
Sbjct: 576 AENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESD 635

Query: 238 -----TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE 292
                ++++ YA+ G +  +  +FD +  ++ + WNAM+AA    G  EEA ++F EM  
Sbjct: 636 DYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEM-- 693

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
           RN           V +         LDQ  +    A TA ++   + +++   + +  K+
Sbjct: 694 RN-----------VGVN--------LDQFSFSGGLAATANLAVLEEGQQL---HGLVIKL 731

Query: 353 G-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIF 411
           G   D+   N  +  Y +CG M + + +  Q +N+  ++WN +I+ +A+      A + F
Sbjct: 732 GFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETF 791

Query: 412 EEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAAL 471
            EM                         LK+       G K DH T    LSAC H   +
Sbjct: 792 HEM-------------------------LKL-------GPKPDHVTFVSLLSACNHGGLV 819

Query: 472 QLGRQIH-HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD-PVDVISWNSLIA 529
             G   +  +  + G    +     +I +  + GR+ +AE   K+   P + ++W SL+A
Sbjct: 820 DEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLA 879

Query: 530 GYAINGNATEAIKLFEEMV 548
              I+GN   A K  E ++
Sbjct: 880 ACRIHGNLELARKTAEHLL 898



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 127/231 (54%), Gaps = 7/231 (3%)

Query: 384 VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
           VN  I   NT+I  Y++   ++ A  +F+EM + RN  SW+ ++SG+++   + +A+ +F
Sbjct: 125 VNLGIFQTNTLINMYSKFGNIEHARYVFDEM-RHRNEASWSTMLSGYVRVGLYEEAVGLF 183

Query: 444 VLMTQEGKKADHSTLACALSACAHLAAL-QLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
             M   G + +   +A  ++AC+    +   G Q+H   +K+G + D++VG +L+  Y  
Sbjct: 184 CQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGS 243

Query: 503 CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
            G + NA+ LF++    +V+SW SL+ GY+ +GN  E + +++ M  EGV+ +  TF  V
Sbjct: 244 IGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATV 303

Query: 563 LSACSHVGLVDGGLKLFECMTEV--YAIEPLVEHYACMIDLLSRAGRLDEA 611
            S+C   GL++  +  ++ +  +  Y  E  V     +I + S    ++EA
Sbjct: 304 TSSC---GLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEA 351



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 142/334 (42%), Gaps = 47/334 (14%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           + +N  IT   K G +  +  IF  +  K+ +T+N+M++A A +G   +A K+F +M  R
Sbjct: 637 YVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEM--R 694

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDL-- 133
           N+                             D FS++  +        LE+ ++L  L  
Sbjct: 695 NV-------------------------GVNLDQFSFSGGLAATANLAVLEEGQQLHGLVI 729

Query: 134 -LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
            L  + D    NA +  Y K G  ++  K+L    +++ +SWN ++S + ++G    A +
Sbjct: 730 KLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARE 789

Query: 193 FFEAM----EERDVVSWNLMLD-----GYVE--LDDLDSAWKFFQKIPEQNVVSWVTMLS 241
            F  M     + D V++  +L      G V+  L   DS  + F   P   +   V ++ 
Sbjct: 790 TFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFP--GIEHCVCIID 847

Query: 242 GYARNGRMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQIEEA---ARLFIEMPERNPVS 297
              R+GR+  A     +MP+  N +AW +++AA    G +E A   A   +E+   +  +
Sbjct: 848 LLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSA 907

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
           +    +      K ++   L  +M   NI  Q A
Sbjct: 908 YVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPA 941



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 8/144 (5%)

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           G+ +H   I       +F  N+LI MY+K G I++A  +F +    +  SW+++++GY  
Sbjct: 113 GKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 172

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG-LVDGGLKLF------ECMTEVY 586
            G   EA+ LF +M   GV P+      +++ACS  G + D G ++         + +VY
Sbjct: 173 VGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVY 232

Query: 587 AIEPLVEHYACMIDLLSRAGRLDE 610
               LV H+   I L+  A +L E
Sbjct: 233 VGTALV-HFYGSIGLVYNAQKLFE 255


>gi|357150569|ref|XP_003575504.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 548

 Score =  335 bits (858), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 185/492 (37%), Positives = 274/492 (55%), Gaps = 14/492 (2%)

Query: 252 ARRLFDQMPIR--NVVAWNAMIAAYVQRGQ---IEEAARLFIEMPERNPVSWTTMIDGYV 306
           AR +FD +P    NV  W A +++Y +        EA  LF+ M    P      +   +
Sbjct: 56  ARAIFDSVPAASANVYLWTATVSSYAKHASPALAAEAFPLFMFMLRSGPRPNGFTVSSVL 115

Query: 307 R-IAKLDEARRLLDQMPY-------KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV 358
           + ++KL  A ++     +        ++     ++  Y    R+ +A ++FD++   +VV
Sbjct: 116 KSLSKLRAAHQVCQVHGFLVKAGLASSLHVGATLLDSYGNLCRVKDARRVFDEMPRSNVV 175

Query: 359 CWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRR 418
             N M+ GY + G ++ A  +F  MV +D ++WNT+++GY +      A  +F+EM  +R
Sbjct: 176 VGNAMVSGYVKAGDVEAARQVFDGMVERDSISWNTLMSGYLRRGDAGLARDLFDEM-PQR 234

Query: 419 NTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIH 478
           N  SWN +IS   +     D++ +F  M     + D +T+A  +SACA L  L + RQ++
Sbjct: 235 NVNSWNMMISACSEVGLWADSVAVFNQMRFMSFRPDAATMAVLMSACAQLGFLSVARQVY 294

Query: 479 HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNAT 538
            L  K     +  V NSL+ M+AKCG    A LLF + DP DV+S+N +++  A +G+  
Sbjct: 295 GLLRKGCVEMNCHVHNSLVDMFAKCGCFSEAHLLFAEMDPKDVVSYNVMVSALAHHGHGK 354

Query: 539 EAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACM 598
           +A+KLFE+M+  G+ PD VTF+GVLSAC+H GLVD G   FE M   YAIE   +HYACM
Sbjct: 355 DALKLFEQMIEGGLQPDAVTFLGVLSACAHAGLVDSGKYYFETMGTTYAIEKSADHYACM 414

Query: 599 IDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKT 658
           +DL  R G ++EA   VK M +KP+AGIWG LL ACR H NI +G +A  +L  +EP   
Sbjct: 415 VDLYGRVGLIEEAHYFVKIMPVKPHAGIWGALLNACRKHCNIDVGEVAARELIRIEPMNP 474

Query: 659 SCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTA 718
             Y LLSN  A + +WD V  VR  M G+G  K  G SW+EV++ +H FL GD       
Sbjct: 475 GNYVLLSNTLAWSQQWDAVGDVRQLMRGNGIDKNTGFSWVEVESVVHEFLMGDFSHPSFD 534

Query: 719 EICNTLKTLAAQ 730
           EIC  L+ L  Q
Sbjct: 535 EICGILELLYPQ 546



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 179/379 (47%), Gaps = 25/379 (6%)

Query: 159 AKKLLDAMP--SKNIVSWNSMLSGYTKNGEMHLASKFFEAM-------EERDVVSWNLML 209
           A+ + D++P  S N+  W + +S Y K+    LA++ F             +  + + +L
Sbjct: 56  ARAIFDSVPAASANVYLWTATVSSYAKHASPALAAEAFPLFMFMLRSGPRPNGFTVSSVL 115

Query: 210 DGYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNVV 265
               +L       +    + +  + S +    T+L  Y    R+ +ARR+FD+MP  NVV
Sbjct: 116 KSLSKLRAAHQVCQVHGFLVKAGLASSLHVGATLLDSYGNLCRVKDARRVFDEMPRSNVV 175

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
             NAM++ YV+ G +E A ++F  M ER+ +SW T++ GY+R      AR L D+MP +N
Sbjct: 176 VGNAMVSGYVKAGDVEAARQVFDGMVERDSISWNTLMSGYLRRGDAGLARDLFDEMPQRN 235

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIG----THDVVCWNVMIKGYAQCGRMDEAINLF- 380
           + +   MIS   +     ++  +F+++       D     V++   AQ G +  A  ++ 
Sbjct: 236 VNSWNMMISACSEVGLWADSVAVFNQMRFMSFRPDAATMAVLMSACAQLGFLSVARQVYG 295

Query: 381 ---RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHL 437
              +  V  +    N+++  +A+     +A  +F EM   ++ VS+N ++S    +    
Sbjct: 296 LLRKGCVEMNCHVHNSLVDMFAKCGCFSEAHLLFAEMDP-KDVVSYNVMVSALAHHGHGK 354

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN--S 495
           DALK+F  M + G + D  T    LSACAH   +  G+  +   + + Y  +    +   
Sbjct: 355 DALKLFEQMIEGGLQPDAVTFLGVLSACAHAGLVDSGK-YYFETMGTTYAIEKSADHYAC 413

Query: 496 LITMYAKCGRIQNAELLFK 514
           ++ +Y + G I+ A    K
Sbjct: 414 MVDLYGRVGLIEEAHYFVK 432



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 157/309 (50%), Gaps = 20/309 (6%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V   N  ++   K+G VE A ++F  M +++++++N+++S Y + G    AR LF++M
Sbjct: 172 SNVVVGNAMVSGYVKAGDVEAARQVFDGMVERDSISWNTLMSGYLRRGDAGLARDLFDEM 231

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKAR 128
           PQRN+ SWN MI+         ++  +F++M    FRPD  + A++++   + G L  AR
Sbjct: 232 PQRNVNSWNMMISACSEVGLWADSVAVFNQMRFMSFRPDAATMAVLMSACAQLGFLSVAR 291

Query: 129 ELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
           +++ LL     + +    N++V  +AK G ++EA  L   M  K++VS+N M+S    +G
Sbjct: 292 QVYGLLRKGCVEMNCHVHNSLVDMFAKCGCFSEAHLLFAEMDPKDVVSYNVMVSALAHHG 351

Query: 186 EMHLASKFFEAMEE----RDVVSWNLMLDGYVELDDLDSAWKFFQKIP-----EQNVVSW 236
               A K FE M E     D V++  +L        +DS   +F+ +      E++   +
Sbjct: 352 HGKDALKLFEQMIEGGLQPDAVTFLGVLSACAHAGLVDSGKYYFETMGTTYAIEKSADHY 411

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPE 292
             M+  Y R G + EA      MP++ +   W A++ A  +   I   E AAR  I +  
Sbjct: 412 ACMVDLYGRVGLIEEAHYFVKIMPVKPHAGIWGALLNACRKHCNIDVGEVAARELIRIEP 471

Query: 293 RNPVSWTTM 301
            NP ++  +
Sbjct: 472 MNPGNYVLL 480



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 150/293 (51%), Gaps = 22/293 (7%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFS 110
           +++ +Y    RV DAR++F++MP+ N+V  N+M++GY+    V+ AR++FD M   D  S
Sbjct: 148 TLLDSYGNLCRVKDARRVFDEMPRSNVVVGNAMVSGYVKAGDVEAARQVFDGMVERDSIS 207

Query: 111 WALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP--- 167
           W  +++ Y R+G+   AR+LFD +P + +   WN M++  +++G + ++  + + M    
Sbjct: 208 WNTLMSGYLRRGDAGLARDLFDEMPQR-NVNSWNMMISACSEVGLWADSVAVFNQMRFMS 266

Query: 168 -SKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAW 222
              +  +   ++S   + G + +A + +  +     E +    N ++D + +      A 
Sbjct: 267 FRPDAATMAVLMSACAQLGFLSVARQVYGLLRKGCVEMNCHVHNSLVDMFAKCGCFSEAH 326

Query: 223 KFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM------PIRNVVAWNAMIAAYVQ 276
             F ++  ++VVS+  M+S  A +G   +A +LF+QM      P  + V +  +++A   
Sbjct: 327 LLFAEMDPKDVVSYNVMVSALAHHGHGKDALKLFEQMIEGGLQP--DAVTFLGVLSACAH 384

Query: 277 RGQIEEAARLFIEMP-----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
            G ++     F  M      E++   +  M+D Y R+  ++EA   +  MP K
Sbjct: 385 AGLVDSGKYYFETMGTTYAIEKSADHYACMVDLYGRVGLIEEAHYFVKIMPVK 437



 Score =  117 bits (293), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 169/383 (44%), Gaps = 47/383 (12%)

Query: 53  ISAYAKNGRVNDARKLFEQMP--QRNLVSWNSMIAGYLHNDKVKEARELFDK-MF----- 104
           ++  A +     AR +F+ +P    N+  W + ++ Y  +     A E F   MF     
Sbjct: 44  VTLIASSSSPQYARAIFDSVPAASANVYLWTATVSSYAKHASPALAAEAFPLFMFMLRSG 103

Query: 105 -RPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWN---AMVAGYAKIGNYNEAK 160
            RP+ F+ + ++   ++     +  ++   L      +  +    ++  Y  +    +A+
Sbjct: 104 PRPNGFTVSSVLKSLSKLRAAHQVCQVHGFLVKAGLASSLHVGATLLDSYGNLCRVKDAR 163

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
           ++ D MP  N+V  N+M+SGY K G++  A + F+ M ERD +SWN ++ GY+   D   
Sbjct: 164 RVFDEMPRSNVVVGNAMVSGYVKAGDVEAARQVFDGMVERDSISWNTLMSGYLRRGDAGL 223

Query: 221 AWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI----RNVVAWNAMIAAYVQ 276
           A   F ++P++NV SW  M+S  +  G   ++  +F+QM       +      +++A  Q
Sbjct: 224 ARDLFDEMPQRNVNSWNMMISACSEVGLWADSVAVFNQMRFMSFRPDAATMAVLMSACAQ 283

Query: 277 RGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGY 336
            G +  A +++                G +R   ++            N     +++  +
Sbjct: 284 LGFLSVARQVY----------------GLLRKGCVE-----------MNCHVHNSLVDMF 316

Query: 337 VQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV----NKDIVTWN 392
            +     EA+ +F ++   DVV +NVM+   A  G   +A+ LF QM+      D VT+ 
Sbjct: 317 AKCGCFSEAHLLFAEMDPKDVVSYNVMVSALAHHGHGKDALKLFEQMIEGGLQPDAVTFL 376

Query: 393 TMIAGYAQIRQMDDAVKIFEEMG 415
            +++  A    +D     FE MG
Sbjct: 377 GVLSACAHAGLVDSGKYYFETMG 399


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  335 bits (858), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 197/644 (30%), Positives = 326/644 (50%), Gaps = 63/644 (9%)

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPS-KNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
           D      +V  Y K G+   A+++ D MP   ++  W +++SGY K G++      F  M
Sbjct: 128 DNVLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKM 187

Query: 198 E----ERDVVSWNLMLD---GYVELDDLDSAWKFFQKIP--EQNVVSWVTMLSGYARNGR 248
                  D  + + +L    G   ++D +      +K+    Q  V    +++ YA++ R
Sbjct: 188 HCCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVG-NALMAFYAKSNR 246

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDG 304
             +A  +FD MP R+V++WN+MI+     G  ++A  LF+ M     E +  +  +++  
Sbjct: 247 TKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPA 306

Query: 305 YVRIAKLDEARRLLDQMPYKNIAAQTAM----ISGYVQNKRMDEANQIFDKIGTHDVVCW 360
              +  L   R +          +QT++    +  Y         N+IF  +   +VV W
Sbjct: 307 CAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSW 366

Query: 361 NVMIKGYAQCGRMDEAINLFRQM------------------------------------- 383
             MI  Y + G  D+   LF++M                                     
Sbjct: 367 TAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIR 426

Query: 384 --VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALK 441
             + K +   N ++  Y +   M++A  IF+ +   ++ +SWN LI G+ +N    +A  
Sbjct: 427 NGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGV-VSKDMISWNTLIGGYSRNNLANEAFS 485

Query: 442 IFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYA 501
           +F  M  +  + +  T+ C L A A L++L+ GR++H  A++ GY+ D FV N+LI MY 
Sbjct: 486 LFTEMLLQ-LRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYV 544

Query: 502 KCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIG 561
           KCG +  A  LF      ++ISW  ++AGY ++G   +AI LFE+M + G+APD  +F  
Sbjct: 545 KCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSA 604

Query: 562 VLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIK 621
           +L ACSH GL D G + F+ M + + IEP ++HY CM+DLL   G L EA+E +  M I+
Sbjct: 605 ILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIE 664

Query: 622 PNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVR 681
           P++ IW +LL  CR+H+N+KL     E++ ELEP+ T  Y LL+N++AEA RW+ V K++
Sbjct: 665 PDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWEAVRKLK 724

Query: 682 VSMEGSGAQKQPGCSWIEVKNQIHTFLSGD---PKQCRTAEICN 722
             + G G ++  GCSWIE K ++H F++ +   P+  R AE  N
Sbjct: 725 NKIGGRGLRENTGCSWIEAKGKVHVFIADNRNHPQGTRIAEFLN 768



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 130/537 (24%), Positives = 216/537 (40%), Gaps = 119/537 (22%)

Query: 7   SIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTV-TYNSMISAYAKNGRVNDA 65
           S+G  G       K +    K G +E A ++F +M Q + V  + +++S YAK G + + 
Sbjct: 121 SLGRDGMDNVLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREG 180

Query: 66  RKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELE 125
             LF +M                H   V           RPD ++ + ++ C    G +E
Sbjct: 181 VLLFRKM----------------HCCGV-----------RPDAYTISCVLKCIAGLGSIE 213

Query: 126 KARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYT 182
               +  LL         A  NA++A YAK     +A  + D MP ++++SWNSM+SG T
Sbjct: 214 DGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCT 273

Query: 183 KNGEMHLASKFFEAM----EERDVVSW--------------------------------- 205
            NG    A + F  M    EE D  +                                  
Sbjct: 274 SNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTS 333

Query: 206 --NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM---- 259
             N++LD Y    D  S  K F+ + ++NVVSW  M++ Y R G   +   LF +M    
Sbjct: 334 LANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEG 393

Query: 260 ------------------------------PIRN-----VVAWNAMIAAYVQRGQIEEAA 284
                                          IRN     +   NA++  YV+ G +EEA 
Sbjct: 394 TRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAK 453

Query: 285 RLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK---NIAAQTAMISGYVQNKR 341
            +F  +  ++ +SW T+I GY R    +EA  L  +M  +   N    T ++        
Sbjct: 454 LIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQLRPNAVTMTCILPAAASLSS 513

Query: 342 MDEANQI----FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAG 397
           ++   ++      +    D    N +I  Y +CG +  A  LF ++ NK++++W  M+AG
Sbjct: 514 LERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAG 573

Query: 398 YAQIRQMDDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
           Y    +  DA+ +FE+M   G   +  S++A++     +    +  + F  M +E K
Sbjct: 574 YGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHK 630



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 152/314 (48%), Gaps = 31/314 (9%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM----PQRNLVSWNSMIAGYLHND 91
           KIF  M QKN V++ +MI++Y + G  +    LF++M     + ++ +  S +  +  N+
Sbjct: 353 KIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNE 412

Query: 92  KVKEARELFDKMFRPDL-----FSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
            +K  + +     R  +      + ALM   Y + G +E+A+ +FD + +K D   WN +
Sbjct: 413 LLKHGKSVHGYAIRNGMEKVLAVTNALM-EMYVKCGNMEEAKLIFDGVVSK-DMISWNTL 470

Query: 147 VAGYAKIGNYNEAKKLL---------DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
           + GY++    NEA  L          +A+    I+   + LS   +  EMH A       
Sbjct: 471 IGGYSRNNLANEAFSLFTEMLLQLRPNAVTMTCILPAAASLSSLERGREMH-AYALRRGY 529

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFD 257
            E D V+ N ++D YV+   L  A + F ++  +N++SW  M++GY  +GR  +A  LF+
Sbjct: 530 LEDDFVA-NALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFE 588

Query: 258 QMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVRI 308
           QM +  +     +++A++ A    G  +E  R F  M + + +      +T M+D  +  
Sbjct: 589 QMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINT 648

Query: 309 AKLDEARRLLDQMP 322
             L EA   +D MP
Sbjct: 649 GNLKEAYEFIDSMP 662



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 147/327 (44%), Gaps = 20/327 (6%)

Query: 24  QLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSM 83
           +L K G+      I + M +   VT N+++  Y K G + +A+ +F+ +  ++++SWN++
Sbjct: 412 ELLKHGKSVHGYAIRNGMEKVLAVT-NALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTL 470

Query: 84  IAGYLHNDKVKEARELFDKM---FRPDLFSWALMITCYTRKGELEKARELFDLLPNK--- 137
           I GY  N+   EA  LF +M    RP+  +   ++        LE+ RE+      +   
Sbjct: 471 IGGYSRNNLANEAFSLFTEMLLQLRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYL 530

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
           ED    NA++  Y K G    A++L D + +KN++SW  M++GY  +G    A   FE M
Sbjct: 531 EDDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQM 590

Query: 198 E----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGR 248
                  D  S++ +L         D  W+FF  + +++ +      +  M+      G 
Sbjct: 591 RVSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGN 650

Query: 249 MLEARRLFDQMPIR-NVVAWNAMI-AAYVQRG--QIEEAARLFIEMPERNPVSWTTMIDG 304
           + EA    D MPI  +   W +++    + R     EE A    E+   N   +  + + 
Sbjct: 651 LKEAYEFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANI 710

Query: 305 YVRIAKLDEARRLLDQMPYKNIAAQTA 331
           Y    + +  R+L +++  + +   T 
Sbjct: 711 YAEAERWEAVRKLKNKIGGRGLRENTG 737



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F  N  I    K G +  A ++F ++S KN +++  M++ Y  +GR  DA  LFEQM   
Sbjct: 534 FVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVS 593

Query: 76  NL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEK 126
            +     S+++++    H+    E    FD M       P L  +  M+      G L++
Sbjct: 594 GIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKE 653

Query: 127 ARELFDLLPNKEDTACWNAMVAG 149
           A E  D +P + D++ W +++ G
Sbjct: 654 AYEFIDSMPIEPDSSIWVSLLRG 676


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  335 bits (858), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 208/703 (29%), Positives = 340/703 (48%), Gaps = 114/703 (16%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM----HLASKFFEAMEE 199
             +VA Y   G  + A  +L+ +     V WN ++  + K G +    +++ +   A   
Sbjct: 55  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 114

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRL 255
            D  +   +L    EL        F   I     E NV     +++ Y+R G + EA  +
Sbjct: 115 LDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 174

Query: 256 FDQMP---IRNVVAWNAMIAAYVQRGQIEEAARLFIEM---------------------- 290
           FD++    I +V++WN++++A+V+      A  LF +M                      
Sbjct: 175 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 234

Query: 291 ---------PERNPVSWTT--------------MIDGYVRIAKLDEARRLLDQMPYKNIA 327
                    P+   V                  +ID Y +   ++ A ++ + M +K++ 
Sbjct: 235 PACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVV 294

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQM 383
           +  AM++GY Q+     A ++F  +       D+V W  +I GY+Q G   EA+N+FRQM
Sbjct: 295 SWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQM 354

Query: 384 V-------------------------------------------------NKDIVTWNTM 394
           +                                                 ++D++ +N +
Sbjct: 355 IFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNAL 414

Query: 395 IAGYAQIRQMDDAVKIFEEMG-KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE--GK 451
           I  Y++ R    A  IF+++  + RN V+W  +I G  Q     DALK+FV M  E  G 
Sbjct: 415 IDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGV 474

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND--LFVGNSLITMYAKCGRIQNA 509
             +  T++C L ACAHLAA+++G+QIH   ++    +    FV N LI MY+KCG +  A
Sbjct: 475 APNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTA 534

Query: 510 ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
             +F        ISW S++ GY ++G  +EA+ +F++M   G  PD +TF+ VL ACSH 
Sbjct: 535 RHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHC 594

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629
           G+VD GL  F+ M+  Y + P  EHYA  IDLL+R GRLD+A++ VK M ++P A +W  
Sbjct: 595 GMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVA 654

Query: 630 LLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689
           LL ACR+H N++L   A+ KL E+  +    Y L+SN++A AGRW +V ++R  M+ SG 
Sbjct: 655 LLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGI 714

Query: 690 QKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +K+PGCSW++ +    +F  GD     + +I   L++L  +I+
Sbjct: 715 KKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIK 757



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 128/519 (24%), Positives = 223/519 (42%), Gaps = 112/519 (21%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQK---NTVTYNSMISAYAKNGRVNDARKLF 69
           S VF  N  +    + G +EEA  IF +++Q+   + +++NS++SA+ K+     A  LF
Sbjct: 150 SNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLF 209

Query: 70  EQMP----------QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMI 115
            +M           + +++S  +++        V + +E+     R     D+F    +I
Sbjct: 210 SKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALI 269

Query: 116 TCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI---- 171
             Y + G +E A ++F+++  K D   WNAMVAGY++ GN+  A +L   M  +NI    
Sbjct: 270 DAYAKCGLMENAVKVFNMMEFK-DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDM 328

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAM---------------------------------- 197
           V+W ++++GY++ G  H A   F  M                                  
Sbjct: 329 VTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAY 388

Query: 198 ---------------EERDVVSWNLMLDGYVELDDLDSAWKFFQKIP--EQNVVSWVTML 240
                          E+ D++ +N ++D Y +     +A   F  IP  E+NVV+W  M+
Sbjct: 389 SLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMI 448

Query: 241 SGYARNGRMLEARRLFDQMPIRNV-VAWNA--------------------MIAAYVQRGQ 279
            G+A+ G   +A +LF +M      VA NA                     I AYV R  
Sbjct: 449 GGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHH 508

Query: 280 IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQN 339
             +++  F+            +I+ Y +   +D AR + D M  K+  + T+M++GY  +
Sbjct: 509 QYDSSAYFVA---------NCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMH 559

Query: 340 KRMDEANQIFDKIG----THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMI 395
            R  EA  IFDK+       D + + V++   + CG +D+ ++ F  M     +T     
Sbjct: 560 GRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEH 619

Query: 396 AGY-----AQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
             Y     A+  ++D A K  ++M      V W AL+S 
Sbjct: 620 YAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSA 658



 Score =  135 bits (340), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 103/427 (24%), Positives = 200/427 (46%), Gaps = 54/427 (12%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR---NLVSWNSMIAGYLHNDKVKEAREL 99
           + N    N++++ Y++ G + +A  +F+++ QR   +++SWNS+++ ++ +     A +L
Sbjct: 149 ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDL 208

Query: 100 FDKMF----------RPDLFSWA-LMITCYTRKGELEKARELFDLLPNKE--DTACWNAM 146
           F KM           R D+ S   ++  C + K   +      + + N    D    NA+
Sbjct: 209 FSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNAL 268

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DV 202
           +  YAK G    A K+ + M  K++VSWN+M++GY+++G    A + F+ M +     D+
Sbjct: 269 IDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDM 328

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
           V+W  ++ GY +      A   F+++       N V+ +++LS  A  G   +   +   
Sbjct: 329 VTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEI-HA 387

Query: 259 MPIRN---------------VVAWNAMIAAYVQRGQIEEAARLFIEMP--ERNPVSWTTM 301
             ++N               ++ +NA+I  Y +    + A  +F ++P  ERN V+WT M
Sbjct: 388 YSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVM 447

Query: 302 IDGYVRIAKLDEARRLLDQM---PY---KNIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
           I G+ +    ++A +L  +M   PY    N    + ++        +    QI   +  H
Sbjct: 448 IGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRH 507

Query: 356 D------VVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVK 409
                      N +I  Y++CG +D A ++F  M  K  ++W +M+ GY    +  +A+ 
Sbjct: 508 HQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALD 567

Query: 410 IFEEMGK 416
           IF++M K
Sbjct: 568 IFDKMRK 574



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 140/621 (22%), Positives = 250/621 (40%), Gaps = 110/621 (17%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL 88
           G  + A+ +  +++    V +N +I  + K GR++ A  +  +M +       + +  + 
Sbjct: 65  GATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG-----TRLDHFT 119

Query: 89  HNDKVKEAREL--------FDKM-----FRPDLFSWALMITCYTRKGELEKARELFDLLP 135
               +K   EL        F  +     F  ++F    ++  Y+R G LE+A  +FD + 
Sbjct: 120 LPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEIT 179

Query: 136 NK--EDTACWNAMVAGYAKIGNYNEAKKLLDAM-------PSK---------NIVSWNSM 177
            +  +D   WN++V+ + K  N   A  L   M       P+          NI+     
Sbjct: 180 QRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGS 239

Query: 178 LSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV 237
           L    +  E+H            DV   N ++D Y +   +++A K F  +  ++VVSW 
Sbjct: 240 LKAVPQTKEVH--GNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWN 297

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPER 293
            M++GY+++G    A  LF  M   N+    V W A+IA Y QRG   EA  +F +M   
Sbjct: 298 AMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFS 357

Query: 294 NPV-SWTTMIDGYVRIAKLDEARRLLDQMPY-----------------KNIAAQTAMISG 335
             + +  T+I      A L    + ++   Y                 +++    A+I  
Sbjct: 358 GSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDM 417

Query: 336 YVQNKRMDEANQIFDKIGTHD--VVCWNVMIKGYAQCGRMDEAINLFRQMVN-------- 385
           Y + +    A  IFD I   +  VV W VMI G+AQ G  ++A+ LF +M++        
Sbjct: 418 YSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPN 477

Query: 386 --------------------KDIVTW---------------NTMIAGYAQIRQMDDAVKI 410
                               K I  +               N +I  Y++   +D A  +
Sbjct: 478 AYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHV 537

Query: 411 FEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAA 470
           F+ M  +++ +SW ++++G+  +    +AL IF  M + G   D  T    L AC+H   
Sbjct: 538 FDSM-SQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGM 596

Query: 471 LQLG-RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD--ADPVDVISWNSL 527
           +  G      ++   G           I + A+ GR+  A    KD   +P  V+ W +L
Sbjct: 597 VDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVV-WVAL 655

Query: 528 IAGYAINGNATEAIKLFEEMV 548
           ++   ++ N   A     ++V
Sbjct: 656 LSACRVHSNVELAEHALNKLV 676



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 91/414 (21%), Positives = 181/414 (43%), Gaps = 76/414 (18%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  N  I    K G +E A+K+F+ M  K+ V++N+M++ Y+++G    A +LF+ M +
Sbjct: 262 VFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRK 321

Query: 75  RN----LVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEK 126
            N    +V+W ++IAGY       EA  +F +M      P+  +   +++     G   +
Sbjct: 322 ENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQ 381

Query: 127 ARELF-------------DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP--SKNI 171
             E+              D     ED   +NA++  Y+K  ++  A+ + D +P   +N+
Sbjct: 382 GMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNV 441

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAM---------------------------------- 197
           V+W  M+ G+ + G+ + A K F  M                                  
Sbjct: 442 VTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIH 501

Query: 198 ------EERDVVSW---NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGR 248
                  + D  ++   N +++ Y +  D+D+A   F  + +++ +SW +M++GY  +GR
Sbjct: 502 AYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGR 561

Query: 249 MLEARRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WT 299
             EA  +FD+M     + + + +  ++ A    G +++    F  M     ++     + 
Sbjct: 562 GSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYA 621

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNIAAQ-TAMISGYVQNKRMDEANQIFDKI 352
             ID   R  +LD+A + +  MP +  A    A++S    +  ++ A    +K+
Sbjct: 622 YAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKL 675



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 9/167 (5%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S  F  N  I    K G V+ A  +F  MSQK+ +++ SM++ Y  +GR ++A  +F++M
Sbjct: 513 SAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKM 572

Query: 73  PQRNLV----SWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGE 123
            +   V    ++  ++    H   V +    FD M       P    +A  I    R G 
Sbjct: 573 RKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGR 632

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN 170
           L+KA +    +P +     W A+++      N   A+  L+ +   N
Sbjct: 633 LDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMN 679



 Score = 42.0 bits (97), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 13/132 (9%)

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
           +++   +G  ++  Y  CG    A L+ +   P   + WN LI  +   G    AI +  
Sbjct: 47  FISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSC 106

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI------EPLVEHYACMI 599
            M+  G   D  T   VL AC       G L  + C +  + +      E  V     ++
Sbjct: 107 RMLRAGTRLDHFTLPHVLKAC-------GELPSYRCGSAFHGLICCNGFESNVFICNALV 159

Query: 600 DLLSRAGRLDEA 611
            + SR G L+EA
Sbjct: 160 AMYSRCGSLEEA 171


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  335 bits (858), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 211/694 (30%), Positives = 358/694 (51%), Gaps = 70/694 (10%)

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKL 162
           PDL ++++++    R    +  + +   L       D+   N +++ Y+K G+   A+ +
Sbjct: 42  PDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLI 101

Query: 163 LDAMPSK-NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE-LDDLDS 220
            + M +K ++VSW++M+S +  N     A   F  M E             +    + + 
Sbjct: 102 FEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANY 161

Query: 221 AW------KFFQKIP--EQNVVSWVTMLSGYAR-NGRMLEARRLFDQMPIRNVVAWNAMI 271
           AW       F  K    E +V     ++  + + +G +  A ++FD+MP RN+V W  MI
Sbjct: 162 AWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMI 221

Query: 272 AAYVQRGQIEEAARLFIEM------PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
             + Q G   +A  LF++M      P+R   ++++++     +  L   ++L  ++    
Sbjct: 222 TRFAQLGCARDAIDLFLDMELSGYVPDR--FTYSSVLSACTELGLLALGKQLHSRVIRLG 279

Query: 326 IAAQTA-------MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMD-EAI 377
           +A           M +    +  +D++ ++F+++  H+V+ W  +I  Y Q G  D EAI
Sbjct: 280 LALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAI 339

Query: 378 NLFRQMVNKDI---------------------------------------VTWNTMIAGY 398
            LF +M++  I                                          N++I+ Y
Sbjct: 340 ELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMY 399

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           A+  +M+DA K F+ + ++ N VS+NA++ G+ +N    +A  +F  +   G      T 
Sbjct: 400 ARSGRMEDARKAFDILFEK-NLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTF 458

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
           A  LS  A + A+  G QIH   +K GY ++  + N+LI+MY++CG I+ A  +F + + 
Sbjct: 459 ASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMED 518

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
            +VISW S+I G+A +G AT A+++F +M+  G  P+ +T++ VLSACSHVG++  G K 
Sbjct: 519 RNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKH 578

Query: 579 FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQ 638
           F  M + + I P +EHYACM+DLL R+G L EA E +  M +  +A +W TLLGACR+H 
Sbjct: 579 FNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHG 638

Query: 639 NIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWI 698
           N +LGR A E + E EP   + Y LLSN+HA AG+W +V K+R SM+     K+ GCSWI
Sbjct: 639 NTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWI 698

Query: 699 EVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           EV+N++H F  G+    +  +I   L  LA++I+
Sbjct: 699 EVENRVHRFHVGETSHPQAWQIYQELDQLASKIK 732



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 142/588 (24%), Positives = 275/588 (46%), Gaps = 75/588 (12%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMP-QRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
           ++V  N++IS Y+K G    AR +FE M  +R+LVSW++M++ + +N    +A   F  M
Sbjct: 78  DSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDM 137

Query: 104 ----FRPDLFSWALMITCYTRKGELEKARELFDLLPN----KEDTACWNAMVAGYAK-IG 154
               F P+ + +A +I   +          ++  +      + D      ++  + K  G
Sbjct: 138 LELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSG 197

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLD 210
           +   A K+ D MP +N+V+W  M++ + + G    A   F  ME      D  +++ +L 
Sbjct: 198 DLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLS 257

Query: 211 GYVELDDLDSAWKFFQKIPEQNV-------VSWVTMLSGYARNGRMLEARRLFDQMPIRN 263
              EL  L    +   ++    +        S V M +  A +G + ++R++F+QMP  N
Sbjct: 258 ACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHN 317

Query: 264 VVAWNAMIAAYVQRGQIE-EAARLFIEMPE----RNPVSWT------------------- 299
           V++W A+I AYVQ G+ + EA  LF +M       N  S++                   
Sbjct: 318 VMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY 377

Query: 300 ----------------TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMD 343
                           ++I  Y R  ++++AR+  D +  KN+ +  A++ GY +N + +
Sbjct: 378 SYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSE 437

Query: 344 EANQIFDKIGTHDV----VCWNVMIKGYAQCGRMDEAINLFRQMV----NKDIVTWNTMI 395
           EA  +F++I    +      +  ++ G A  G M +   +  +++      +    N +I
Sbjct: 438 EAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALI 497

Query: 396 AGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADH 455
           + Y++   ++ A ++F EM + RN +SW ++I+GF ++ F   AL++F  M + G K + 
Sbjct: 498 SMYSRCGNIEAAFQVFNEM-EDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNE 556

Query: 456 STLACALSACAHLAALQLG-RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
            T    LSAC+H+  +  G +  + +  + G V  +     ++ +  + G +  A + F 
Sbjct: 557 ITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEA-MEFI 615

Query: 515 DADPV--DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
           ++ P+  D + W +L+    ++GN TE  +   EM++E    DP  +I
Sbjct: 616 NSMPLMADALVWRTLLGACRVHGN-TELGRHAAEMILEQEPDDPAAYI 662



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 148/297 (49%), Gaps = 20/297 (6%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL- 108
           NS+IS YA++GR+ DARK F+ + ++NLVS+N+++ GY  N K +EA  LF+++    + 
Sbjct: 393 NSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIG 452

Query: 109 ---FSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL 162
              F++A +++     G + K  ++   L     K +    NA+++ Y++ GN   A ++
Sbjct: 453 ISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQV 512

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDL 218
            + M  +N++SW SM++G+ K+G    A + F  M E       +++  +L     +  +
Sbjct: 513 FNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMI 572

Query: 219 DSAWKFFQKI-PEQNVVS----WVTMLSGYARNGRMLEARRLFDQMPI-RNVVAWNAMIA 272
               K F  +  E  +V     +  M+    R+G ++EA    + MP+  + + W  ++ 
Sbjct: 573 SEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLG 632

Query: 273 AYVQRGQIE---EAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
           A    G  E    AA + +E    +P ++  + + +    +  +  ++   M  +N+
Sbjct: 633 ACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNL 689



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 94/182 (51%), Gaps = 2/182 (1%)

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
           A     LMTQ+    D +T +  L +C      QLG+ +H   ++SG   D  V N+LI+
Sbjct: 28  AFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLIS 87

Query: 499 MYAKCGRIQNAELLFKD-ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
           +Y+KCG  + A L+F+   +  D++SW+++++ +A N    +AI  F +M+  G  P+  
Sbjct: 88  LYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEY 147

Query: 558 TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSR-AGRLDEAFEMVK 616
            F  V+ ACS+      G  ++  + +   +E  V     +ID+  + +G L  A+++  
Sbjct: 148 CFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFD 207

Query: 617 GM 618
            M
Sbjct: 208 KM 209



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 101/215 (46%), Gaps = 23/215 (10%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           + N    N++IS Y++ G +  A ++F +M  RN++SW SMI G+  +     A E+F K
Sbjct: 487 KSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHK 546

Query: 103 MF----RPDLFSWALMITCYTRKGELEKARELFD-------LLPNKEDTACWNAMVAGYA 151
           M     +P+  ++  +++  +  G + + ++ F+       ++P  E  AC   MV    
Sbjct: 547 MLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYAC---MVDLLG 603

Query: 152 KIGNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNGEMHL---ASKFFEAMEERDVVSWNL 207
           + G   EA + +++MP   + + W ++L     +G   L   A++     E  D  ++ L
Sbjct: 604 RSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYIL 663

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVV-----SWV 237
           + + +          K  + + E+N++     SW+
Sbjct: 664 LSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWI 698


>gi|345505212|gb|AEN99830.1| chlororespiratory reduction 4, partial [Brassica oleracea]
          Length = 590

 Score =  335 bits (858), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 168/445 (37%), Positives = 265/445 (59%), Gaps = 5/445 (1%)

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY--KN 325
           N +I  Y++ G +  A ++F  MPER+ VS+ +MIDGYV+   ++ A  L D MP   +N
Sbjct: 145 NCLIGLYIKCGFLGFARQVFDRMPERDSVSYNSMIDGYVKCGLVESAGELFDLMPREKRN 204

Query: 326 IAAQTAMISGYVQNKR-MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
           +    +MI GY Q    +D A ++FD++   D++ WN MI GY + GR+++A  LF  M 
Sbjct: 205 LITWNSMIGGYAQRADGVDVAEKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFNVMP 264

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
            +D+VTW  MI GY ++  +  A  +F++M   R+ V++N+++SG++QN +H++AL++F 
Sbjct: 265 RRDVVTWAIMIDGYGKLGLVHVAKTLFDQM-PHRDVVAYNSMMSGYVQNRYHMEALEVFN 323

Query: 445 LMTQEGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
            M +E     D ++L   LSA A L  L     +H   ++  +     +G +LI MY+KC
Sbjct: 324 HMEKESHLTPDETSLVIVLSAIAQLGRLSKAIDMHLYIVEKQFPLSGKLGVALIDMYSKC 383

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
           G IQ+A  +F+  +   +  WN++I G A++G    A  +  ++    + PD +TF+GVL
Sbjct: 384 GSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLFQIERRSIKPDHITFVGVL 443

Query: 564 SACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPN 623
           +ACSH GLV  GL  FE M   + IEP ++HY CM+D+L+R+G +  A  +++GM I+PN
Sbjct: 444 NACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSIKLARNLIEGMPIEPN 503

Query: 624 AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVS 683
             IW T L AC  H+  + G +  + L        S Y LLSNM+A  G W +V +VR  
Sbjct: 504 DVIWRTFLTACSHHKEFETGELVAKHLILXGGYNPSSYVLLSNMYASNGMWKDVRRVRTM 563

Query: 684 MEGSGAQKQPGCSWIEVKNQIHTFL 708
           M+    +K PGCSWIE+  ++H FL
Sbjct: 564 MKEKNIEKIPGCSWIELDGRVHEFL 588



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 128/451 (28%), Positives = 233/451 (51%), Gaps = 36/451 (7%)

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKK-- 161
           D F W ++I  ++   +  KA  L  L+       D    +  +   +++G   E  +  
Sbjct: 70  DPFLWNVVIKSHSHGVDPRKALFLLCLMLESSVPVDKFSLSLALKACSRLGFVKEGTQVH 129

Query: 162 --LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLD 219
             L+      ++   N ++  Y K G +  A + F+ M ERD VS+N M+DGYV+   ++
Sbjct: 130 GFLIKTGTWSDLFLQNCLIGLYIKCGFLGFARQVFDRMPERDSVSYNSMIDGYVKCGLVE 189

Query: 220 SAWKFFQKIP--EQNVVSWVTMLSGYARNGRMLE-ARRLFDQMPIRNVVAWNAMIAAYVQ 276
           SA + F  +P  ++N+++W +M+ GYA+    ++ A +LFD+MP +++++WN+MI  YV+
Sbjct: 190 SAGELFDLMPREKRNLITWNSMIGGYAQRADGVDVAEKLFDEMPEKDLISWNSMIGGYVK 249

Query: 277 RGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGY 336
            G+IE+A  LF  MP R+ V+W  MIDGY ++  +  A+ L DQMP++++ A  +M+SGY
Sbjct: 250 HGRIEDAKGLFNVMPRRDVVTWAIMIDGYGKLGLVHVAKTLFDQMPHRDVVAYNSMMSGY 309

Query: 337 VQNKRMDEANQIFDKIG-----THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTW 391
           VQN+   EA ++F+ +      T D     +++   AQ GR+ +AI++   +V K     
Sbjct: 310 VQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAIAQLGRLSKAIDMHLYIVEKQFPLS 369

Query: 392 N----TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMT 447
                 +I  Y++   +  A+++FE + + ++   WNA+I G   +     A  +   + 
Sbjct: 370 GKLGVALIDMYSKCGSIQHAMRVFEGI-ESKSIDHWNAMIGGLAVHGLGESAFDMLFQIE 428

Query: 448 QEGKKADHSTLACALSACAH-------LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500
           +   K DH T    L+AC+H       L   +L R+ H +  +  +         ++ + 
Sbjct: 429 RRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHY------GCMVDIL 482

Query: 501 AKCGRIQNAELLFK--DADPVDVISWNSLIA 529
           A+ G I+ A  L +    +P DVI W + + 
Sbjct: 483 ARSGSIKLARNLIEGMPIEPNDVI-WRTFLT 512



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/294 (35%), Positives = 158/294 (53%), Gaps = 13/294 (4%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F QN  I    K G +  A ++F +M ++++V+YNSMI  Y K G V  A +LF+ M
Sbjct: 139 SDLFLQNCLIGLYIKCGFLGFARQVFDRMPERDSVSYNSMIDGYVKCGLVESAGELFDLM 198

Query: 73  P--QRNLVSWNSMIAGYLHN-DKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARE 129
           P  +RNL++WNSMI GY    D V  A +LFD+M   DL SW  MI  Y + G +E A+ 
Sbjct: 199 PREKRNLITWNSMIGGYAQRADGVDVAEKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKG 258

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           LF+++P + D   W  M+ GY K+G  + AK L D MP +++V++NSM+SGY +N     
Sbjct: 259 LFNVMP-RRDVVTWAIMIDGYGKLGLVHVAKTLFDQMPHRDVVAYNSMMSGYVQNRYHME 317

Query: 190 ASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV----SWVTML 240
           A + F  ME+      D  S  ++L    +L  L  A      I E+         V ++
Sbjct: 318 ALEVFNHMEKESHLTPDETSLVIVLSAIAQLGRLSKAIDMHLYIVEKQFPLSGKLGVALI 377

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
             Y++ G +  A R+F+ +  +++  WNAMI      G  E A  +  ++  R+
Sbjct: 378 DMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLFQIERRS 431



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 117/417 (28%), Positives = 204/417 (48%), Gaps = 29/417 (6%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNT----VTYNSMISAYAKNGRVNDARKLFEQ 71
           F+ +  +    + G V+E  ++   + +  T       N +I  Y K G +  AR++F++
Sbjct: 107 FSLSLALKACSRLGFVKEGTQVHGFLIKTGTWSDLFLQNCLIGLYIKCGFLGFARQVFDR 166

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP--DLFSWALMITCYTRKGE-LEKAR 128
           MP+R+ VS+NSMI GY+    V+ A ELFD M R   +L +W  MI  Y ++ + ++ A 
Sbjct: 167 MPERDSVSYNSMIDGYVKCGLVESAGELFDLMPREKRNLITWNSMIGGYAQRADGVDVAE 226

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
           +LFD +P K D   WN+M+ GY K G   +AK L + MP +++V+W  M+ GY K G +H
Sbjct: 227 KLFDEMPEK-DLISWNSMIGGYVKHGRIEDAKGLFNVMPRRDVVTWAIMIDGYGKLGLVH 285

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV-----SWVTMLSGY 243
           +A   F+ M  RDVV++N M+ GYV+      A + F  + +++ +     S V +LS  
Sbjct: 286 VAKTLFDQMPHRDVVAYNSMMSGYVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAI 345

Query: 244 ARNGRMLEARRLF-----DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW 298
           A+ GR+ +A  +       Q P+   +   A+I  Y + G I+ A R+F  +  ++   W
Sbjct: 346 AQLGRLSKAIDMHLYIVEKQFPLSGKLG-VALIDMYSKCGSIQHAMRVFEGIESKSIDHW 404

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYV----QNKRMDEANQIFDKIGT 354
             MI G       + A  +L Q+  ++I        G +     +  + E    F+ +  
Sbjct: 405 NAMIGGLAVHGLGESAFDMLFQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRR 464

Query: 355 HDVV-----CWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAGYAQIRQMD 405
              +      +  M+   A+ G +  A NL   M +  + V W T +   +  ++ +
Sbjct: 465 KHKIEPRLQHYGCMVDILARSGSIKLARNLIEGMPIEPNDVIWRTFLTACSHHKEFE 521



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 133/330 (40%), Gaps = 85/330 (25%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I    K GR+E+A  +F+ M +++ VT+  MI  Y K G V+ A+ LF+QMP R++V
Sbjct: 241 NSMIGGYVKHGRIEDAKGLFNVMPRRDVVTWAIMIDGYGKLGLVHVAKTLFDQMPHRDVV 300

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWAL-------------------- 113
           ++NSM++GY+ N    EA E+F+ M       PD  S  +                    
Sbjct: 301 AYNSMMSGYVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAIAQLGRLSKAIDMHLY 360

Query: 114 ---------------MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNE 158
                          +I  Y++ G ++ A  +F+ + +K     WNAM+ G A  G    
Sbjct: 361 IVEKQFPLSGKLGVALIDMYSKCGSIQHAMRVFEGIESKS-IDHWNAMIGGLAVHGLGES 419

Query: 159 AKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS-----WNLML 209
           A  +L  +  ++I    +++  +L+  + +G +      FE M  +  +      +  M+
Sbjct: 420 AFDMLFQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMV 479

Query: 210 DGYVELDDLDSAWKFFQKIP-EQNVVSWVTMLSG-------------------------- 242
           D       +  A    + +P E N V W T L+                           
Sbjct: 480 DILARSGSIKLARNLIEGMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILXGGYNPS 539

Query: 243 --------YARNGRMLEARRLFDQMPIRNV 264
                   YA NG   + RR+   M  +N+
Sbjct: 540 SYVLLSNMYASNGMWKDVRRVRTMMKEKNI 569



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 68/136 (50%)

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
           G+  +   WN +I           AL +  LM +     D  +L+ AL AC+ L  ++ G
Sbjct: 66  GEVEDPFLWNVVIKSHSHGVDPRKALFLLCLMLESSVPVDKFSLSLALKACSRLGFVKEG 125

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
            Q+H   IK+G  +DLF+ N LI +Y KCG +  A  +F      D +S+NS+I GY   
Sbjct: 126 TQVHGFLIKTGTWSDLFLQNCLIGLYIKCGFLGFARQVFDRMPERDSVSYNSMIDGYVKC 185

Query: 535 GNATEAIKLFEEMVME 550
           G    A +LF+ M  E
Sbjct: 186 GLVESAGELFDLMPRE 201



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 87/210 (41%), Gaps = 18/210 (8%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           I    K G ++ A+++F  +  K+   +N+MI   A +G    A  +  Q+ +R++   +
Sbjct: 377 IDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLFQIERRSIKPDH 436

Query: 82  SMIAGYL----HNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARELFD 132
               G L    H+  VKE    F+ M R     P L  +  M+    R G ++ AR L +
Sbjct: 437 ITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSIKLARNLIE 496

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNEAK---KLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
            +P + +   W   +   +    +   +   K L      N  S+  + + Y  NG    
Sbjct: 497 GMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILXGGYNPSSYVLLSNMYASNGMWKD 556

Query: 190 ASKFFEAMEERDV-----VSWNLMLDGYVE 214
             +    M+E+++      SW + LDG V 
Sbjct: 557 VRRVRTMMKEKNIEKIPGCSW-IELDGRVH 585


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  335 bits (858), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 185/562 (32%), Positives = 306/562 (54%), Gaps = 16/562 (2%)

Query: 183 KNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG 242
           K  + H+    F+     D    N +L  Y +   L  A   F K+ +++  SW  +LS 
Sbjct: 42  KRLQSHMEHHLFQPT---DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSA 98

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWT- 299
           YA++G +   +  FD+MP R+ V++N  IA +      +E+  LF  M      P  +T 
Sbjct: 99  YAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTI 158

Query: 300 -TMIDGYVRIAKLDEARRLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFDKIGT 354
            ++++   ++  L   +++   +  +N         A+   Y +   +++A  +FD +  
Sbjct: 159 VSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTK 218

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMV----NKDIVTWNTMIAGYAQIRQMDDAVKI 410
            ++V WN+MI GYA+ G+ ++ I L  QM       D VT +T+IA Y Q  ++D+A ++
Sbjct: 219 KNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRV 278

Query: 411 FEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAA 470
           F E  K ++ V W A++ G+ +N    DAL +F  M  E  + D  TL+  +S+CA LA+
Sbjct: 279 FSEF-KEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLAS 337

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
           L  G+ +H  +I +G  N+L V ++LI MY+KCG I +A  +F      +V+SWN++I G
Sbjct: 338 LHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVG 397

Query: 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP 590
            A NG+  +A++LFE M+ +   PD VTFIG+LSAC H   ++ G + F+ ++  + + P
Sbjct: 398 CAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTP 457

Query: 591 LVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL 650
            ++HYACM++LL R GR+++A  ++K M   P+  IW TLL  C    +I    +A   L
Sbjct: 458 TLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHL 517

Query: 651 SELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSG 710
            EL+P     Y +LSNM+A  GRW +V  VR  M+    +K  G SWIE+ N++H F S 
Sbjct: 518 FELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSE 577

Query: 711 DPKQCRTAEICNTLKTLAAQIR 732
           D     + +I   L  L  +++
Sbjct: 578 DRTHPESEDIYEKLNMLIGKLQ 599



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 133/486 (27%), Positives = 232/486 (47%), Gaps = 61/486 (12%)

Query: 113 LMITCYTRKGELEKARELFDLLPNK----EDTACWNAMVAGYAKIGNYNEAKKLLDAMPS 168
           L++ C  R  E+ +A+ L   + +      D+   N ++  YAK G   +A+ L D M  
Sbjct: 28  LVLEC-VRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKMLK 86

Query: 169 KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI 228
           ++  SWN++LS Y K+G +      F+ M  RD VS+N  + G+        + + F+++
Sbjct: 87  RDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRM 146

Query: 229 P----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQI 280
                E    + V++L+  A+   +   +++   + +R    NV  WNA+   Y + G+I
Sbjct: 147 QREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEI 206

Query: 281 EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK----NIAAQTAMISGY 336
           E+A  LF  + ++N VSW  MI GY +  + ++   LL QM       +    + +I+ Y
Sbjct: 207 EQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAY 266

Query: 337 VQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM------------- 383
            Q  R+DEA ++F +    D+VCW  M+ GYA+ GR ++A+ LF +M             
Sbjct: 267 CQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLS 326

Query: 384 --------------------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
                                     +N +++  + +I  Y++   +DDA  +F  M   
Sbjct: 327 SVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLM-PT 385

Query: 418 RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ- 476
           RN VSWNA+I G  QN    DAL++F  M Q+  K D+ T    LSAC H   ++ G++ 
Sbjct: 386 RNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEY 445

Query: 477 IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD--ADPVDVISWNSLIAGYAIN 534
              ++ + G    L     ++ +  + GRI+ A  L K+   DP D + W++L++  +  
Sbjct: 446 FDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDP-DFLIWSTLLSICSTK 504

Query: 535 GNATEA 540
           G+   A
Sbjct: 505 GDIVNA 510



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 220/448 (49%), Gaps = 42/448 (9%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F  N+ +    K G++ +A  +F +M +++  ++N+++SAYAK+G + + +  F++MP R
Sbjct: 59  FLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFR 118

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           + VS+N+ IAG+  N   +E+ ELF +M R          T YT    L  + +L DL  
Sbjct: 119 DSVSYNTTIAGFSGNSCPQESLELFKRMQRE-----GFEPTEYTIVSILNASAQLLDLRY 173

Query: 136 NKE------------DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK 183
            K+            +   WNA+   YAK G   +A+ L D +  KN+VSWN M+SGY K
Sbjct: 174 GKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAK 233

Query: 184 NGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTM 239
           NG+          M       D V+ + ++  Y +   +D A + F +  E+++V W  M
Sbjct: 234 NGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAM 293

Query: 240 LSGYARNGRMLEARRLFDQM----------PIRNVVAWNAMIAAYVQRGQIEEAARLFIE 289
           + GYA+NGR  +A  LF++M           + +VV+  A +A+ +  GQ      +   
Sbjct: 294 MVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLAS-LHHGQAVHGKSILAG 352

Query: 290 MPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF 349
           +     VS + +ID Y +   +D+AR + + MP +N+ +  AMI G  QN    +A ++F
Sbjct: 353 LNNNLLVS-SALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELF 411

Query: 350 DKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT-----WNTMIAGYAQ 400
           + +       D V +  ++     C  +++    F  + N+  +T     +  M+    +
Sbjct: 412 ENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGR 471

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALIS 428
             +++ AV + + M    + + W+ L+S
Sbjct: 472 TGRIEQAVALIKNMAHDPDFLIWSTLLS 499



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/367 (23%), Positives = 171/367 (46%), Gaps = 55/367 (14%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKN--------------- 59
           VF  N       K G +E+A  +F  +++KN V++N MIS YAKN               
Sbjct: 190 VFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRL 249

Query: 60  --------------------GRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEAREL 99
                               GRV++AR++F +  ++++V W +M+ GY  N + ++A  L
Sbjct: 250 SGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLL 309

Query: 100 FDKMF----RPDLFSWALMITCYTRKGELEKARELFD---LLPNKEDTACWNAMVAGYAK 152
           F++M      PD ++ + +++   +   L   + +     L     +    +A++  Y+K
Sbjct: 310 FNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSK 369

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLM 208
            G  ++A+ + + MP++N+VSWN+M+ G  +NG    A + FE M ++    D V++  +
Sbjct: 370 CGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGI 429

Query: 209 LDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPIR- 262
           L   +  + ++   ++F  I  Q+ ++     +  M++   R GR+ +A  L   M    
Sbjct: 430 LSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDP 489

Query: 263 NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLD 319
           + + W+ +++    +G I   E AAR   E+     V +  + + Y  + +  +   + +
Sbjct: 490 DFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRN 549

Query: 320 QMPYKNI 326
            M  KN+
Sbjct: 550 LMKSKNV 556


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  335 bits (858), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 191/537 (35%), Positives = 299/537 (55%), Gaps = 24/537 (4%)

Query: 205 WNLMLDGYVELDDLDSAWKFFQKIPE--QNVVSWVTMLSGYARNGRMLEARRLFDQM--- 259
           +N +++ Y +   L+ A   F       + +V+W ++++  +     L+A  LF+QM   
Sbjct: 180 FNNLINLYAKCGCLNQALLLFSITHHHFKTIVTWTSLITHLSHFNMHLQALSLFNQMRCS 239

Query: 260 -PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEA 314
            P  N   ++++++A      +    +L   + +     N    T ++D Y + A +  A
Sbjct: 240 GPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSA 299

Query: 315 RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWN-VMIKG-YAQCGR 372
            R+ DQMP +N+ +  +MI G+  N   D A  +F  +     V  N V +    + C  
Sbjct: 300 VRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACAN 359

Query: 373 MDEAINLFRQMVNKDIVTW---------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
           M   +N  RQ V+  +V +         N+++  Y + R  D+ VK+F+ +G R + V+W
Sbjct: 360 MG-GLNFGRQ-VHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDR-DVVTW 416

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
           N L+ GF+QN+   +A   F +M +EG   D ++ +  L + A LAAL  G  IH   IK
Sbjct: 417 NVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIK 476

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
            GYV ++ +  SLITMYAKCG + +A  +F+  +  +VISW ++I+ Y ++G A + I+L
Sbjct: 477 LGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIEL 536

Query: 544 FEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLS 603
           FE M+ EG+ P  VTF+ VLSACSH G V+ GL  F  M +++ + P  EHYACM+DLL 
Sbjct: 537 FEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLG 596

Query: 604 RAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYAL 663
           RAG LDEA   ++ M +KP   +WG LLGACR + N+K+GR A E+L E+EP     Y L
Sbjct: 597 RAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVL 656

Query: 664 LSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           L+NM   +GR +E  +VR  M  +G +K+PGCSWI+VKN    F + D     + EI
Sbjct: 657 LANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEI 713



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 116/483 (24%), Positives = 218/483 (45%), Gaps = 39/483 (8%)

Query: 31  VEEAIKIFSQMSQKNTVT----YNSMISAYAKNGRVNDARKLFEQMPQ--RNLVSWNSMI 84
           ++ A +I +Q+   N  +    +N++I+ YAK G +N A  LF       + +V+W S+I
Sbjct: 158 LKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHFKTIVTWTSLI 217

Query: 85  AGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
               H +   +A  LF++M      P+ F+++ +++       +   ++L  L+      
Sbjct: 218 THLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFD 277

Query: 141 A---CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF-EA 196
           A      A+V  YAK  + + A ++ D MP +N+VSWNSM+ G+  N     A   F + 
Sbjct: 278 ANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDV 337

Query: 197 MEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGR 248
           + E+ V    VS + +L     +  L+   +    + +  +V       +++  Y +   
Sbjct: 338 LREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRF 397

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDG 304
             E  +LF  +  R+VV WN ++  +VQ  + EEA   F  M       +  S++T++  
Sbjct: 398 FDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHS 457

Query: 305 YVRIAKLDEARRLLDQMP----YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW 360
              +A L +   + DQ+      KN+    ++I+ Y +   + +A Q+F+ I  H+V+ W
Sbjct: 458 SASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISW 517

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
             MI  Y   G  ++ I LF  M+++ I    VT+  +++  +   ++++ +  F  M K
Sbjct: 518 TAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKK 577

Query: 417 RRNT---VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQL 473
             +        A +   L     LD  K F+       K   S     L AC     L++
Sbjct: 578 IHDMNPGPEHYACMVDLLGRAGWLDEAKRFI--ESMPMKPTPSVWGALLGACRKYGNLKM 635

Query: 474 GRQ 476
           GR+
Sbjct: 636 GRE 638



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 131/549 (23%), Positives = 231/549 (42%), Gaps = 111/549 (20%)

Query: 143 WNAMVAGYAKIGNYNEAKKLLDAMPS--KNIVSWNSMLSGYTKNGEMHL-ASKFFEAMEE 199
           +N ++  YAK G  N+A  L        K IV+W S+++ +  +  MHL A   F  M  
Sbjct: 180 FNNLINLYAKCGCLNQALLLFSITHHHFKTIVTWTSLIT-HLSHFNMHLQALSLFNQMRC 238

Query: 200 R-------------DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARN 246
                            +  +M+    +L  L     F     + N+     ++  YA+ 
Sbjct: 239 SGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGF-----DANIFVGTALVDMYAKC 293

Query: 247 GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER-----NPVSWTTM 301
             M  A R+FDQMP RN+V+WN+MI  +      + A  +F ++        N VS +++
Sbjct: 294 ADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSV 353

Query: 302 IDGYVRIAKLDEARRLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFDKIGTHDV 357
           +     +  L+  R++   +    +   T    +++  Y + +  DE  ++F  +G  DV
Sbjct: 354 LSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDV 413

Query: 358 VCWNVMIKGYAQCGRMDEAINLF----RQMVNKDIVTWNT-------------------- 393
           V WNV++ G+ Q  + +EA N F    R+ +  D  +++T                    
Sbjct: 414 VTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQ 473

Query: 394 ---------------MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
                          +I  YA+   + DA ++FE + +  N +SW A+IS +  +     
Sbjct: 474 IIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGI-EDHNVISWTAMISAYQLHGCANQ 532

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
            +++F  M  EG +  H T  C LSAC+H   ++ G   H  ++K   ++D+  G     
Sbjct: 533 VIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLA-HFNSMKK--IHDMNPGPE--- 586

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
                            A  VD++       G A  G   EA +  E M M+   P P  
Sbjct: 587 ---------------HYACMVDLL-------GRA--GWLDEAKRFIESMPMK---PTPSV 619

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEM---- 614
           +  +L AC   G +  G +  E + E+    P   +Y  + ++ +R+GRL+EA E+    
Sbjct: 620 WGALLGACRKYGNLKMGREAAERLFEMEPYNP--GNYVLLANMCTRSGRLEEANEVRRLM 677

Query: 615 -VKGMKIKP 622
            V G++ +P
Sbjct: 678 GVNGVRKEP 686



 Score =  105 bits (263), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 139/292 (47%), Gaps = 40/292 (13%)

Query: 332 MISGYVQNKRMDEANQIFDKIGTHDVVC----WNVMIKGYAQCGRMDEAINLFRQMVN-- 385
           +++  +Q + +  A QI  +I  ++       +N +I  YA+CG +++A+ LF    +  
Sbjct: 148 LLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHF 207

Query: 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVL 445
           K IVTW ++I   +                                    HL AL +F  
Sbjct: 208 KTIVTWTSLITHLSHF--------------------------------NMHLQALSLFNQ 235

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
           M   G   +  T +  LSA A    +  G+Q+H L  K G+  ++FVG +L+ MYAKC  
Sbjct: 236 MRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCAD 295

Query: 506 IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME-GVAPDPVTFIGVLS 564
           + +A  +F      +++SWNS+I G+  N     A+ +F++++ E  V P+ V+   VLS
Sbjct: 296 MHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLS 355

Query: 565 ACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVK 616
           AC+++G ++ G ++   + + Y + PL      ++D+  +    DE  ++ +
Sbjct: 356 ACANMGGLNFGRQVHGVVVK-YGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQ 406



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 150/337 (44%), Gaps = 29/337 (8%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F     +    K   +  A+++F QM ++N V++NSMI  +  N   + A  +F+ + +
Sbjct: 280 IFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLR 339

Query: 75  R-----NLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELE 125
                 N VS +S+++   +   +   R++   + +    P  +    ++  Y +    +
Sbjct: 340 EKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFD 399

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV----SWNSMLSGY 181
           +  +LF  + ++ D   WN +V G+ +   + EA      M  + I+    S++++L   
Sbjct: 400 EGVKLFQCVGDR-DVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSS 458

Query: 182 TKNGEMHLASKFFEAMEERDVVSWNLMLDG-----YVELDDLDSAWKFFQKIPEQNVVSW 236
                +H  +   + + +   V  N+ + G     Y +   L  A++ F+ I + NV+SW
Sbjct: 459 ASLAALHQGTAIHDQIIKLGYVK-NMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISW 517

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPE 292
             M+S Y  +G   +   LF+ M    +    V +  +++A    G++EE    F  M +
Sbjct: 518 TAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKK 577

Query: 293 -----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
                  P  +  M+D   R   LDEA+R ++ MP K
Sbjct: 578 IHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMK 614



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 19/168 (11%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
           KN     S+I+ YAK G + DA ++FE +   N++SW +MI+ Y  +    +  ELF+ M
Sbjct: 481 KNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHM 540

Query: 104 F----RPDLFSWALMITCYTRKGELEKA-------RELFDLLPNKEDTACWNAMVAGYAK 152
                 P   ++  +++  +  G +E+        +++ D+ P  E  AC   MV    +
Sbjct: 541 LSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYAC---MVDLLGR 597

Query: 153 IGNYNEAKKLLDAMPSKNIVS-WNSMLSGYTKNGEMHL----ASKFFE 195
            G  +EAK+ +++MP K   S W ++L    K G + +    A + FE
Sbjct: 598 AGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFE 645



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 12/183 (6%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL---- 77
           IT   K G + +A ++F  +   N +++ +MISAY  +G  N   +LFE M    +    
Sbjct: 490 ITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSH 549

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFD 132
           V++  +++   H  +V+E    F+ M       P    +A M+    R G L++A+   +
Sbjct: 550 VTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIE 609

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYN---EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
            +P K   + W A++    K GN     EA + L  M   N  ++  + +  T++G +  
Sbjct: 610 SMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEE 669

Query: 190 ASK 192
           A++
Sbjct: 670 ANE 672


>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 697

 Score =  335 bits (858), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 178/492 (36%), Positives = 282/492 (57%), Gaps = 21/492 (4%)

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN---PVSWT--TMIDGYVRIAK 310
           F QM   NV  +NAMI  +V  G    A + ++ M E +   P S+T  +++     +  
Sbjct: 191 FTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCA 250

Query: 311 LDEARRLLDQMPYKNI---------AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWN 361
           ++     L QM + +I           QTA++  Y + + + EA ++FD++   D   W 
Sbjct: 251 VE-----LGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWT 305

Query: 362 VMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
            M+   A+ G MD A  LF +M  ++  TWNTMI GYA++  ++ A  +F +M   ++ +
Sbjct: 306 AMVSALARVGDMDSARKLFEEMPERNTATWNTMIDGYARLGNVESAELLFNQM-PTKDII 364

Query: 422 SWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLA 481
           SW  +I+ + QN+ + DAL I+  M   G   D  T++   SACAH+ AL+LG++IHH  
Sbjct: 365 SWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYV 424

Query: 482 IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
           +  G   D+++G++L+ MYAKCG +  + L+F      ++  WN++I G A++G A +A+
Sbjct: 425 MSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKAL 484

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601
           ++F  M  E + P+ VTFI +LSAC+H GLVD G   F  MT  Y I P + HY CM+D+
Sbjct: 485 RMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDM 544

Query: 602 LSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCY 661
           LS++G L+EA E++K M+ +PN+ IWG LL  C++H N ++   AVE+L  LEP  +  Y
Sbjct: 545 LSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQLMILEPMNSGHY 604

Query: 662 ALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQ-PGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
            LL +M+AE   W EV  +R  M+  G +K+ PG SWIE++  IH F +       + +I
Sbjct: 605 NLLVSMYAEEKDWMEVAHIRSMMKEKGVEKKYPGSSWIELEGTIHQFSASADSHPDSDKI 664

Query: 721 CNTLKTLAAQIR 732
              L  L  Q++
Sbjct: 665 YFVLTELDGQLK 676



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 201/409 (49%), Gaps = 30/409 (7%)

Query: 166 MPSKNIVSWNSMLSGYTKNGEMHLASK-FFEAMEERDVVSWNLMLDGYVELDDLDSAWKF 224
           M + N+  +N+M+ G+   G    A + +   +EE +V+  +      V+      A + 
Sbjct: 194 MENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVEL 253

Query: 225 FQKIP--------EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ 276
            Q +         E ++     ++  Y++   + EAR++FD+M  R+  AW AM++A  +
Sbjct: 254 GQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMVSALAR 313

Query: 277 RGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGY 336
            G ++ A +LF EMPERN  +W TMIDGY R+  ++ A  L +QMP K+I + T MI+ Y
Sbjct: 314 VGDMDSARKLFEEMPERNTATWNTMIDGYARLGNVESAELLFNQMPTKDIISWTTMITCY 373

Query: 337 VQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM--------VNKDI 388
            QNK+  +A  I+ ++  + ++   V +   A       A+ L +++        +N D+
Sbjct: 374 SQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDV 433

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
              + ++  YA+   +D ++ IF ++   +N   WNA+I G   + +   AL++F +M +
Sbjct: 434 YIGSALVDMYAKCGSLDLSLLIFFKL-TDKNLYCWNAVIEGLAVHGYAEKALRMFAIMER 492

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY--VNDLFVGNSLITMYAKCGRI 506
           E    +  T    LSAC H   +  GR    L++   Y    D+     ++ M +K G +
Sbjct: 493 EKIMPNGVTFISILSACTHAGLVDEGRS-RFLSMTRDYDIRPDIRHYGCMVDMLSKSGYL 551

Query: 507 QNAELLFK--DADPVDVISWNSLIAGYAINGN------ATEAIKLFEEM 547
             A  L K  + +P  +I W +L+ G  ++GN      A E + + E M
Sbjct: 552 NEALELIKSMEFEPNSII-WGALLNGCKLHGNCEIAEDAVEQLMILEPM 599



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 99/421 (23%), Positives = 191/421 (45%), Gaps = 50/421 (11%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHN 90
           V   +  F+QM   N   YN+MI  +   G            P R L  +  M    L  
Sbjct: 184 VHYPVFAFTQMENPNVFVYNAMIKGFVYCGY-----------PFRALQCYVHM----LEE 228

Query: 91  DKVKEARELFDKMFRPDLFSWAL----MITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
             V      F  + +   F  A+    M+ C+  K   E    LF             A+
Sbjct: 229 SNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFES--HLF----------VQTAL 276

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN 206
           V  Y+K+   +EA+K+ D M  ++  +W +M+S   + G+M  A K FE M ER+  +WN
Sbjct: 277 VDFYSKLEILSEARKVFDEMCERDAFAWTAMVSALARVGDMDSARKLFEEMPERNTATWN 336

Query: 207 LMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV-- 264
            M+DGY  L +++SA   F ++P ++++SW TM++ Y++N +  +A  ++ +M +  +  
Sbjct: 337 TMIDGYARLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIP 396

Query: 265 --VAWNAMIAAYVQRGQIEEAARL--FIEMPERNPVSW--TTMIDGYVRIAKLDEARRLL 318
             V  + + +A    G +E    +  ++     N   +  + ++D Y +   LD +  + 
Sbjct: 397 DEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIF 456

Query: 319 DQMPYKNIAAQTAMISGYVQNKRMDEANQIF-----DKIGTHDVVCWNVMIKGYAQCGRM 373
            ++  KN+    A+I G   +   ++A ++F     +KI  + V   +++       G +
Sbjct: 457 FKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISIL-SACTHAGLV 515

Query: 374 DEAINLFRQM-----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
           DE  + F  M     +  DI  +  M+   ++   +++A+++ + M    N++ W AL++
Sbjct: 516 DEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLN 575

Query: 429 G 429
           G
Sbjct: 576 G 576



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 156/312 (50%), Gaps = 23/312 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S++F Q   +    K   + EA K+F +M +++   + +M+SA A+ G ++ ARKLFE+M
Sbjct: 268 SHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMVSALARVGDMDSARKLFEEM 327

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD 132
           P+RN  +WN+MI GY     V+ A  LF++M   D+ SW  MITCY++  + + A  ++ 
Sbjct: 328 PERNTATWNTMIDGYARLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYS 387

Query: 133 ------LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSMLSGYT 182
                 ++P   D    + + +  A IG     K++   + S+    ++   ++++  Y 
Sbjct: 388 EMRLNGIIP---DEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYA 444

Query: 183 KNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVT 238
           K G + L+   F  + ++++  WN +++G       + A + F  +  + +    V++++
Sbjct: 445 KCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFIS 504

Query: 239 MLSGYARNGRMLEARRLFDQMP----IR-NVVAWNAMIAAYVQRGQIEEAARLFIEMP-E 292
           +LS     G + E R  F  M     IR ++  +  M+    + G + EA  L   M  E
Sbjct: 505 ILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFE 564

Query: 293 RNPVSWTTMIDG 304
            N + W  +++G
Sbjct: 565 PNSIIWGALLNG 576


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  335 bits (858), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 205/653 (31%), Positives = 346/653 (52%), Gaps = 79/653 (12%)

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
           + NK D   W+A+++ YA   N  +A + + A        ++ +  G+  N   +  +  
Sbjct: 1   MGNKRDLVSWSALISCYA---NNEKAFEAISAF-------FDMLECGFYPN--EYCFTGV 48

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR-NGRMLEA 252
           F A   ++ +S   ++ G++    L + +       E +V     ++  + + NG +  A
Sbjct: 49  FRACSNKENISLGKIIFGFL----LKTGY------FESDVCVGCALIDMFVKGNGDLESA 98

Query: 253 RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PERNPVSWTTMIDGYV 306
            ++FD+MP RNVV W  MI  + Q G   +A  LF++M      P+R  +S   ++    
Sbjct: 99  YKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLS--GVVSACA 156

Query: 307 RIAKLDEARR----LLDQMPYKNIAAQTAMISGY---VQNKRMDEANQIFDKIGTHDVVC 359
            +  L   R+    ++      ++    +++  Y   V +  +D+A ++FD++  H+V+ 
Sbjct: 157 EMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMS 216

Query: 360 WNVMIKGYAQCGRMD-EAINLFRQMVNKDI------------------------------ 388
           W  +I GY Q G  D EAI LF +MV   +                              
Sbjct: 217 WTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALV 276

Query: 389 ---------VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDA 439
                       N++I+ Y++   M++A K F+ + ++ N VS+N +++ + ++    +A
Sbjct: 277 VKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEK-NLVSYNTIVNAYAKSLNSEEA 335

Query: 440 LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
            ++F  +   G   +  T A  LS  + + A+  G QIH   +KSG+ ++L + N+LI+M
Sbjct: 336 FELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISM 395

Query: 500 YAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTF 559
           Y++CG I+ A  +F +    +VISW S+I G+A +G AT A++ F +M+  GV+P+ VT+
Sbjct: 396 YSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTY 455

Query: 560 IGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMK 619
           I VLSACSHVGL+  GLK F+ M   + I P +EHYAC++DLL R+G L+EA E+V  M 
Sbjct: 456 IAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMP 515

Query: 620 IKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEK 679
            K +A +  T LGACR+H N+ LG+ A E + E +P   + Y LLSN+HA AG+W+EV +
Sbjct: 516 FKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAE 575

Query: 680 VRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +R  M+     K+ GCSWIEV+N++H F  GD    +  EI + L  LA +I+
Sbjct: 576 IRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQEIYDELDQLALKIK 628



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 129/557 (23%), Positives = 249/557 (44%), Gaps = 72/557 (12%)

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARE 129
           +R+LVSW+++I+ Y +N+K  EA   F  M    F P+ + +  +    + K  +   + 
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 130 LFDLLPN----KEDTACWNAMVAGYAK-IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
           +F  L      + D     A++  + K  G+   A K+ D MP +N+V+W  M++ + + 
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYV----ELDDLDSAWKFFQKIPEQNV------- 233
           G    A   F  M     V     L G V    E+  L    +F   + +  +       
Sbjct: 124 GFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVG 183

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIE-EAARLFIEMPE 292
            S V M +    +G + +AR++FD+MP+ NV++W A+I  YVQ G  + EA  LF+EM +
Sbjct: 184 CSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQ 243

Query: 293 ----RNPVSWTTMIDGYVRIAKL---DEARRLLDQMPYKNI-AAQTAMISGYVQNKRMDE 344
                N  ++++++     ++ +   ++   L+ +M   +I     ++IS Y +   M+ 
Sbjct: 244 GQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMEN 303

Query: 345 ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM--------------------- 383
           A + FD +   ++V +N ++  YA+    +EA  LF ++                     
Sbjct: 304 ARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASS 363

Query: 384 ------------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
                                ++   N +I+ Y++   ++ A ++F EMG   N +SW +
Sbjct: 364 IGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGD-GNVISWTS 422

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG-RQIHHLAIKS 484
           +I+GF ++ F   AL+ F  M + G   +  T    LSAC+H+  +  G +    + ++ 
Sbjct: 423 MITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEH 482

Query: 485 GYVNDLFVGNSLITMYAKCGRIQNA-ELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
           G V  +     ++ +  + G ++ A EL+       D +   + +    ++GN  +  K 
Sbjct: 483 GIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGN-MDLGKH 541

Query: 544 FEEMVMEGVAPDPVTFI 560
             EM++E    DP  +I
Sbjct: 542 AAEMILEQDPHDPAAYI 558



 Score =  140 bits (352), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 113/461 (24%), Positives = 219/461 (47%), Gaps = 37/461 (8%)

Query: 51  SMISAYAK-NGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           ++I  + K NG +  A K+F++MP RN+V+W  MI  +      ++A +LF  M    + 
Sbjct: 83  ALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYV 142

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKI---GNYNEA 159
           PD F+ + +++     G L   R+   L+       D     ++V  YAK    G+ ++A
Sbjct: 143 PDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDA 202

Query: 160 KKLLDAMPSKNIVSWNSMLSGYTKNG-----EMHLASKFFEAMEERDVVSWNLMLDGYVE 214
           +K+ D MP  N++SW ++++GY ++G      + L  +  +   + +  +++ +L     
Sbjct: 203 RKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACAN 262

Query: 215 LDDLDSAWKFFQKIPEQNVVS----WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAM 270
           L D+    + +  + +  + S      +++S Y+R G M  AR+ FD +  +N+V++N +
Sbjct: 263 LSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTI 322

Query: 271 IAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEAR----RLLDQMP 322
           + AY +    EEA  LF E+       N  ++ +++ G   I  + +      R+L    
Sbjct: 323 VNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGF 382

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
             N+    A+IS Y +   ++ A Q+F+++G  +V+ W  MI G+A+ G    A+  F +
Sbjct: 383 KSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHK 442

Query: 383 M----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV---SWNALISGFLQNEF 435
           M    V+ + VT+  +++  + +  + + +K F+ M      V      A +   L    
Sbjct: 443 MLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSG 502

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ 476
           HL+  +   L+     KAD   L   L AC     + LG+ 
Sbjct: 503 HLE--EAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKH 541



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 160/332 (48%), Gaps = 29/332 (8%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           NS+IS Y++ G + +ARK F+ + ++NLVS+N+++  Y  +   +EA ELF+++      
Sbjct: 289 NSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTG 348

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL 162
            + F++A +++  +  G + K  ++   +     K +    NA+++ Y++ GN   A ++
Sbjct: 349 VNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQV 408

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDL 218
            + M   N++SW SM++G+ K+G    A + F  M E  V    V++  +L     +  +
Sbjct: 409 FNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLI 468

Query: 219 DSAWKFFQKIP-EQNVV----SWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIA 272
               K F+ +  E  +V     +  ++    R+G + EA  L + MP + + +     + 
Sbjct: 469 SEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLG 528

Query: 273 AYVQRGQIE---EAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN---- 325
           A    G ++    AA + +E    +P ++  + + +    + +E   +  +M  +N    
Sbjct: 529 ACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKE 588

Query: 326 -----IAAQTAMISGYVQNKRMDEANQIFDKI 352
                I  +  +   YV +    +A +I+D++
Sbjct: 589 AGCSWIEVENKVHKFYVGDTSHPQAQEIYDEL 620



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 89/192 (46%), Gaps = 17/192 (8%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           I  +GK  ++    +I     + N    N++IS Y++ G +  A ++F +M   N++SW 
Sbjct: 364 IGAIGKGEQIHS--RILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWT 421

Query: 82  SMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFD----- 132
           SMI G+  +     A E F KM      P+  ++  +++  +  G + +  + F      
Sbjct: 422 SMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVE 481

Query: 133 --LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK-NIVSWNSMLSGYTKNGEMHL 189
             ++P  E  AC   +V    + G+  EA +L+++MP K + +   + L     +G M L
Sbjct: 482 HGIVPRMEHYAC---VVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDL 538

Query: 190 ASKFFEAMEERD 201
                E + E+D
Sbjct: 539 GKHAAEMILEQD 550


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  335 bits (858), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 198/619 (31%), Positives = 326/619 (52%), Gaps = 38/619 (6%)

Query: 122 GELEKARELFDLLP-NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG 180
           G L  AR LFD +P  + +   WN++++ +AK G   +A+ +   MP ++ VSW  M+ G
Sbjct: 79  GGLRDARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVG 138

Query: 181 YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI------------ 228
             + G    A K    M           L   +    +  A    +K+            
Sbjct: 139 LNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSC 198

Query: 229 -PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF 287
            P  N V     L+ Y + G    A  +F++MP+R+V +WNAM++     G+++ A  LF
Sbjct: 199 VPVANSV-----LNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLF 253

Query: 288 IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ-----TAMISGYVQNKRM 342
             MP R+ VSW  MI GY +     +A +L  +M +++  A      T+++S       +
Sbjct: 254 ESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNV 313

Query: 343 DEANQIFDKI----GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD--IVTWNTMIA 396
               Q+   I      ++    N +I  YA+ G ++ A  +  Q +  D  ++++  ++ 
Sbjct: 314 RIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLE 373

Query: 397 GYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHS 456
           GY +I  M+ A ++F  M  R + V+W A+I G+ QN  + +A+ +F  M   G + +  
Sbjct: 374 GYVKIGDMESAREMFGVMNNR-DVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSY 432

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
           TLA  LS CA LA L  G+QIH  AI+S       V N++ITMYA+ G    A  +F   
Sbjct: 433 TLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMF--- 489

Query: 517 DPV----DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
           D V    + I+W S+I   A +G   EA+ LFEEM+  GV PD +T++GVLSACSH G V
Sbjct: 490 DQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFV 549

Query: 573 DGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLG 632
           + G + ++ +   + I P + HYACM+DLL+RAG   EA E ++ M ++P+A  WG+LL 
Sbjct: 550 NEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLS 609

Query: 633 ACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQ 692
           ACR+H+N +L  +A EKL  ++P  +  Y+ ++N+++  GRW +  ++  + +    +K+
Sbjct: 610 ACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKE 669

Query: 693 PGCSWIEVKNQIHTFLSGD 711
            G SW  ++++IH F + D
Sbjct: 670 TGFSWTHIRSKIHVFGADD 688



 Score =  201 bits (512), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 154/552 (27%), Positives = 279/552 (50%), Gaps = 50/552 (9%)

Query: 26  GKSGRVEEAIKIFSQ--MSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSM 83
           G +G + +A ++F +  ++++N  T+NS++S +AK+GR+ DAR +F +MP+R+ VSW  M
Sbjct: 76  GGAGGLRDARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVM 135

Query: 84  IAGYLHNDKVKEA-RELFDKM---FRPDLFSWA-LMITC-YTRKGELEKARELFDLLPNK 137
           + G     +  EA + L D     F P  F+   ++ +C  T+ G +   R++   +   
Sbjct: 136 VVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAV--GRKVHSFVVKL 193

Query: 138 EDTAC---WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
              +C    N+++  Y K G+   A  + + MP +++ SWN+M+S  T  G M LA   F
Sbjct: 194 GLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLF 253

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDS-AWKFFQKI-------PEQNVVSWVTMLS---GY 243
           E+M  R +VSWN M+ GY + + LD+ A K F ++       P++  ++ V       G 
Sbjct: 254 ESMPGRSIVSWNAMIAGYNQ-NGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGN 312

Query: 244 ARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER--NPVSWTTM 301
            R G+ + A  L  +M   + V  NA+I+ Y + G +E A R+  +  E   N +S+T +
Sbjct: 313 VRIGKQVHAYILRTEMAYNSQVT-NALISTYAKSGSVENARRIMDQSMETDLNVISFTAL 371

Query: 302 IDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHD----- 356
           ++GYV+I  ++ AR +   M  +++ A TAMI GY QN R DEA  +F  + T       
Sbjct: 372 LEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNS 431

Query: 357 -------VVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVK 409
                   VC ++    Y +           R ++ +     N +I  YA+      A +
Sbjct: 432 YTLAAVLSVCASLACLDYGK----QIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARR 487

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           +F+++  R+ T++W ++I    Q+    +A+ +F  M + G + D  T    LSAC+H  
Sbjct: 488 MFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAG 547

Query: 470 ALQLGRQIHHLAIKSGY--VNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWN 525
            +  G++ ++  IK+ +    ++     ++ + A+ G    A+   +   PV  D I+W 
Sbjct: 548 FVNEGKR-YYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRM-PVEPDAIAWG 605

Query: 526 SLIAGYAINGNA 537
           SL++   ++ NA
Sbjct: 606 SLLSACRVHKNA 617



 Score =  158 bits (400), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 123/443 (27%), Positives = 205/443 (46%), Gaps = 85/443 (19%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS V   N  +   GK G  E A  +F +M  ++  ++N+M+S     GR++ A  LFE 
Sbjct: 196 GSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFES 255

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEK 126
           MP R++VSWN+MIAGY  N    +A +LF +M       PD F+   +++     G +  
Sbjct: 256 MPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRI 315

Query: 127 ARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLD-AMPSK-NIVSWNSMLSGY 181
            +++   +   E   ++   NA+++ YAK G+   A++++D +M +  N++S+ ++L GY
Sbjct: 316 GKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGY 375

Query: 182 TKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWV 237
            K G+M  A + F  M  RDVV+W  M+ GY +    D A   F+ +    PE N  +  
Sbjct: 376 VKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLA 435

Query: 238 TMLS-----------------------------------GYARNGRMLEARRLFDQMPIR 262
            +LS                                    YAR+G    ARR+FDQ+  R
Sbjct: 436 AVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWR 495

Query: 263 N-VVAWNAMIAAYVQRGQIEEAARLFIEM------PERNPVSWTTMIDGYVRIAKLDEAR 315
              + W +MI A  Q GQ EEA  LF EM      P+R  +++  ++        ++E +
Sbjct: 496 KETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDR--ITYVGVLSACSHAGFVNEGK 553

Query: 316 RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
           R  DQ                ++N+     +QI  ++ +H    +  M+   A+ G   E
Sbjct: 554 RYYDQ----------------IKNE-----HQIAPEM-SH----YACMVDLLARAGLFSE 587

Query: 376 AINLFRQM-VNKDIVTWNTMIAG 397
           A    R+M V  D + W ++++ 
Sbjct: 588 AQEFIRRMPVEPDAIAWGSLLSA 610



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 94/237 (39%), Gaps = 49/237 (20%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYV---------------------------------- 487
           L  C   A    GR IH  A+K+G +                                  
Sbjct: 33  LQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEIP 92

Query: 488 ---NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLF 544
               ++F  NSL++M+AK GR+ +A  +F +    D +SW  ++ G    G   EAIK  
Sbjct: 93  LARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTL 152

Query: 545 EEMVMEGVAPDPVTFIGVLSAC--SHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLL 602
            +M  +G  P   T   VLS+C  +  G V   +  F     + +  P+      ++++ 
Sbjct: 153 LDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANS---VLNMY 209

Query: 603 SRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAV-EKLSELEPQKT 658
            + G  + A  + + M ++ +   W  ++       N  LGR+ + E L E  P ++
Sbjct: 210 GKCGDAETASTVFERMPVR-SVSSWNAMVSL-----NTHLGRMDLAESLFESMPGRS 260


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 173/544 (31%), Positives = 306/544 (56%), Gaps = 18/544 (3%)

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV- 264
           N +L  Y +   L  A + F  I ++N+VSW  M+  +    + LEA + ++ M +    
Sbjct: 86  NTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCK 145

Query: 265 ---VAWNAMIAAYVQRGQIEEAARLFIEMPERN----PVSWTTMIDGYVRIAKLDEARRL 317
              V + +++ A+     ++   ++ +E+ E      P   T+++  Y +   + +AR +
Sbjct: 146 PDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVI 205

Query: 318 LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV----VCWNVMIKGYAQCGRM 373
            D++P KN+   T +I+GY Q  ++D A ++ + +   +V    + +  +++G      +
Sbjct: 206 FDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAAL 265

Query: 374 DEAINLFRQMVN----KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
           +    + R ++     +++   N++I  Y +   +++A K+F ++   R+ V+W A+++G
Sbjct: 266 EHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDL-PHRDVVTWTAMVTG 324

Query: 430 FLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND 489
           + Q  FH +A+ +F  M Q+G K D  T    L++C+  A LQ G++IH   + +GY  D
Sbjct: 325 YAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLD 384

Query: 490 LFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGY-AINGNATEAIKLFEEMV 548
           +++ ++L++MYAKCG + +A L+F      +V++W ++I G  A +G   EA++ F++M 
Sbjct: 385 VYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMK 444

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
            +G+ PD VTF  VLSAC+HVGLV+ G K F  M   Y I+P+VEHY+C +DLL RAG L
Sbjct: 445 KQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHL 504

Query: 609 DEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMH 668
           +EA  ++  M   P   +WG LL ACR+H +++ G  A E + +L+P     Y  LS+++
Sbjct: 505 EEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIY 564

Query: 669 AEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLA 728
           A AGR+++ EKVR  ME     K+PG SWIEV  ++H F   D     + +I   L  L 
Sbjct: 565 AAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESEQIYVELGKLT 624

Query: 729 AQIR 732
            QI+
Sbjct: 625 EQIK 628



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 135/518 (26%), Positives = 260/518 (50%), Gaps = 48/518 (9%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           Q N    N+++S YAK G + DAR++F+ +  RN+VSW +MI  ++  +K  EA + ++ 
Sbjct: 79  QPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYET 138

Query: 103 M----FRPDLFSWALMITCYT--------RKGELEKARELFDLLPNKEDTACWNAMVAGY 150
           M     +PD  ++  ++  +T        +K  +E      +L P         ++V  Y
Sbjct: 139 MKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPR-----VGTSLVGMY 193

Query: 151 AKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWN 206
           AK G+ ++A+ + D +P KN+V+W  +++GY + G++ +A +  E M++ +V    +++ 
Sbjct: 194 AKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFA 253

Query: 207 LMLDGYVELDDLDSAWKFFQKIPEQNVVS--WV--TMLSGYARNGRMLEARRLFDQMPIR 262
            +L G      L+   K  + I +       WV  ++++ Y + G + EAR+LF  +P R
Sbjct: 254 SILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHR 313

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLL 318
           +VV W AM+  Y Q G  +EA  LF  M ++    + +++T+++      A L E +R+ 
Sbjct: 314 DVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIH 373

Query: 319 DQMPYK----NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG-YAQCGRM 373
            Q+ +     ++  Q+A++S Y +   MD+A+ +F+++   +VV W  +I G  AQ GR 
Sbjct: 374 QQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRC 433

Query: 374 DEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM----GKRRNTVSWNA 425
            EA+  F QM    +  D VT+ ++++    +  +++  K F  M    G +     ++ 
Sbjct: 434 REALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSC 493

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485
            +   L    HL+  +  +L          S     LSAC   + ++ G +     +K  
Sbjct: 494 FVD-LLGRAGHLEEAENVILSMP--FIPGPSVWGALLSACRVHSDVERGERAAENVLKLD 550

Query: 486 YVND-LFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
             +D  +V  +L ++YA  GR ++AE + +  +  DV+
Sbjct: 551 PDDDGAYV--ALSSIYAAAGRYEDAEKVRQVMEKRDVV 586



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 113/433 (26%), Positives = 211/433 (48%), Gaps = 48/433 (11%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR----NLVSWNS 82
           K G + +A  IF ++ +KN VT+  +I+ YA+ G+V+ A +L E M Q     N +++ S
Sbjct: 195 KCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFAS 254

Query: 83  MIAGYL------HNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN 136
           ++ G        H  KV   R +    +  +L+    +IT Y + G LE+AR+LF  LP+
Sbjct: 255 ILQGCTTPAALEHGKKVH--RYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPH 312

Query: 137 KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLS-----GYTKNGEM 187
           + D   W AMV GYA++G ++EA  L   M  + I    +++ S+L+      + + G+ 
Sbjct: 313 R-DVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGK- 370

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG-YARN 246
            +  +   A    DV   + ++  Y +   +D A   F ++ E+NVV+W  +++G  A++
Sbjct: 371 RIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQH 430

Query: 247 GRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS----- 297
           GR  EA   FDQM  + +    V + ++++A    G +EE  + F  M     +      
Sbjct: 431 GRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEH 490

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPY-KNIAAQTAMISG---YVQNKRMDEANQIFDKIG 353
           ++  +D   R   L+EA  ++  MP+    +   A++S    +   +R + A +   K+ 
Sbjct: 491 YSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLD 550

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIV-----TWNTMIAGYAQIRQMDD-- 406
             D   +  +   YA  GR ++A  + + M  +D+V     +W   + G   +  ++D  
Sbjct: 551 PDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSW-IEVDGKVHVFHVEDKS 609

Query: 407 ---AVKIFEEMGK 416
              + +I+ E+GK
Sbjct: 610 HPESEQIYVELGK 622



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 114/240 (47%), Gaps = 33/240 (13%)

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
           +AL I   M  +G +         L  CA L +L+ GR++H   +KSG   + ++ N+L+
Sbjct: 30  EALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLL 89

Query: 498 TMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
           +MYAKCG + +A  +F      +++SW ++I  +       EA K +E M + G  PD V
Sbjct: 90  SMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKV 149

Query: 558 TFIGVLSACS-----------HVGLVDGGLKL----FECMTEVYA--------------- 587
           TF+ +L+A +           H+ +V+ GL+L       +  +YA               
Sbjct: 150 TFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRL 209

Query: 588 IEPLVEHYACMIDLLSRAGRLDEAFEMVKGMK---IKPNAGIWGTLLGACRMHQNIKLGR 644
            E  V  +  +I   ++ G++D A E+++ M+   + PN   + ++L  C     ++ G+
Sbjct: 210 PEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGK 269



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/363 (20%), Positives = 166/363 (45%), Gaps = 57/363 (15%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  IT   K G +EEA K+FS +  ++ VT+ +M++ YA+ G  ++A  LF +M Q+ + 
Sbjct: 288 NSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGI- 346

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
                                     +PD  ++  ++T  +    L++ + +   L +  
Sbjct: 347 --------------------------KPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAG 380

Query: 139 ---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG-YTKNGEMHLASKFF 194
              D    +A+V+ YAK G+ ++A  + + M  +N+V+W ++++G   ++G    A ++F
Sbjct: 381 YNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYF 440

Query: 195 EAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKI-----PEQNVVSWVTMLSGYAR 245
           + M+++    D V++  +L     +  ++   K F+ +      +  V  +   +    R
Sbjct: 441 DQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGR 500

Query: 246 NGRMLEARRLFDQMP-IRNVVAWNAMIAAY-----VQRGQIEEAARLFIEMPERNPVSWT 299
            G + EA  +   MP I     W A+++A      V+RG  E AA   +++   +  ++ 
Sbjct: 501 AGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERG--ERAAENVLKLDPDDDGAYV 558

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAM----ISG-----YVQNKRMDEANQIFD 350
            +   Y    + ++A ++   M  +++  +       + G     +V++K   E+ QI+ 
Sbjct: 559 ALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESEQIYV 618

Query: 351 KIG 353
           ++G
Sbjct: 619 ELG 621



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 112/219 (51%), Gaps = 19/219 (8%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISA-YAKNGRVNDARKLFEQMP 73
           V+ Q+  ++   K G +++A  +F+QMS++N V + ++I+   A++GR  +A + F+QM 
Sbjct: 385 VYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMK 444

Query: 74  QRNL----VSWNSMIAGYLHNDKVKEARELFDKMF-----RPDLFSWALMITCYTRKGEL 124
           ++ +    V++ S+++   H   V+E R+ F  M+     +P +  ++  +    R G L
Sbjct: 445 KQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHL 504

Query: 125 EKARELFDLLPNKEDTACWNAMVAG---YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
           E+A  +   +P     + W A+++    ++ +     A + +  +   +  ++ ++ S Y
Sbjct: 505 EEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIY 564

Query: 182 TKNGEMHLASKFFEAMEERDVV-----SWNLMLDGYVEL 215
              G    A K  + ME+RDVV     SW + +DG V +
Sbjct: 565 AAAGRYEDAEKVRQVMEKRDVVKEPGQSW-IEVDGKVHV 602


>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g29230-like [Glycine max]
          Length = 446

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 168/422 (39%), Positives = 264/422 (62%), Gaps = 2/422 (0%)

Query: 313 EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGR 372
           +A ++  +M  KN+ A TA+++ +V    M  A ++FD     DVV WNV++ GY + G 
Sbjct: 12  DAYKVFAEMRDKNVFAWTAVVAAHVACHDMVSARRLFDLAPQCDVVLWNVIVSGYIELGD 71

Query: 373 MDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
           M  A  LF +M + D+++WNT+++GYA   +++  VK+FEEM   RN  SWN LI G+++
Sbjct: 72  MVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEM-PARNVYSWNGLIGGYVR 130

Query: 433 NEFHLDALKIFVLMTQEGKKADHS-TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLF 491
           N    +AL+ F  M  +G    +  T+   LSAC+ L  L++G+ +H  A   GY  +LF
Sbjct: 131 NGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYKGNLF 190

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
           VGN+LI MYAKCG I+ A  +F   D  D+I+WN++I   A++ +A +A+ LFE M   G
Sbjct: 191 VGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGMKRAG 250

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
             PD VTF+G+LSAC+H+GLV  G   F+ M + Y I P +EHY CM+DLL RAG +++A
Sbjct: 251 ERPDGVTFVGILSACTHMGLVRNGFLHFQSMVDDYLIVPQIEHYGCMVDLLGRAGLINQA 310

Query: 612 FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEA 671
            ++V+ M ++P+  IW  LLGACR ++N+++  +A+++L ELEP     + +LSN++ + 
Sbjct: 311 VDIVRKMPMEPDVVIWAALLGACRXYKNVEMAELALQRLIELEPNNPGNFVMLSNIYKDL 370

Query: 672 GRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           GR  +V +++V+M  +G +K PGCS I   + +  F S D +   T  I   L+ L   +
Sbjct: 371 GRSQDVARLKVAMRDTGFRKVPGCSVIGCNDSVVEFYSLDERHPETDSIYRALQGLTILL 430

Query: 732 RN 733
           R+
Sbjct: 431 RS 432



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 128/239 (53%), Gaps = 17/239 (7%)

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDD 217
           +A K+   M  KN+ +W ++++ +    +M  A + F+   + DVV WN+++ GY+EL D
Sbjct: 12  DAYKVFAEMRDKNVFAWTAVVAAHVACHDMVSARRLFDLAPQCDVVLWNVIVSGYIELGD 71

Query: 218 LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR 277
           + +A + F ++P+ +V+SW T+LSGYA NG +    ++F++MP RNV +WN +I  YV+ 
Sbjct: 72  MVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMPARNVYSWNGLIGGYVRN 131

Query: 278 GQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL------------LDQMPYK- 324
           G  +EA   F    +R  V    + + Y  +A L    RL             D + YK 
Sbjct: 132 GLFKEALECF----KRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYKG 187

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
           N+    A+I  Y +   +++A  +FD +   D++ WN +I   A      +A++LF  M
Sbjct: 188 NLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGM 246



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 166/325 (51%), Gaps = 24/325 (7%)

Query: 93  VKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAK 152
           V +A ++F +M   ++F+W  ++  +    ++  AR LFDL P + D   WN +V+GY +
Sbjct: 10  VADAYKVFAEMRDKNVFAWTAVVAAHVACHDMVSARRLFDLAP-QCDVVLWNVIVSGYIE 68

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY 212
           +G+   A++L D MP  +++SWN++LSGY  NGE+ L  K FE M  R+V SWN ++ GY
Sbjct: 69  LGDMVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMPARNVYSWNGLIGGY 128

Query: 213 VELDDLDSAWKFFQKIPEQNVV-----SWVTMLSGYARNGRMLEARRLF---DQMPIR-N 263
           V       A + F+++    VV     + V +LS  +R G +   + +    D +  + N
Sbjct: 129 VRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYKGN 188

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
           +   NA+I  Y + G IE+A  +F  +  ++ ++W T+I+         +A  L + M  
Sbjct: 189 LFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGMKR 248

Query: 324 KN-----------IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGR 372
                        ++A T M  G V+N  +   + + D +    +  +  M+    + G 
Sbjct: 249 AGERPDGVTFVGILSACTHM--GLVRNGFLHFQSMVDDYLIVPQIEHYGCMVDLLGRAGL 306

Query: 373 MDEAINLFRQM-VNKDIVTWNTMIA 396
           +++A+++ R+M +  D+V W  ++ 
Sbjct: 307 INQAVDIVRKMPMEPDVVIWAALLG 331



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 168/351 (47%), Gaps = 30/351 (8%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL 88
           G +  A ++F +M   + +++N+++S YA NG V    K+FE+MP RN+ SWN +I GY+
Sbjct: 70  GDMVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMPARNVYSWNGLIGGYV 129

Query: 89  HNDKVKEARELFDKMF-----RPDLFSWALMITCYTRKGELEKARELF---DLLPNKEDT 140
            N   KEA E F +M       P+ ++   +++  +R G+LE  + +    D +  K + 
Sbjct: 130 RNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYKGNL 189

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM--- 197
              NA++  YAK G   +A  + D +  K+I++WN++++    +     A   FE M   
Sbjct: 190 FVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGMKRA 249

Query: 198 -EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV-----SWVTMLSGYARNGRMLE 251
            E  D V++  +L     +  + + +  FQ + +  ++      +  M+    R G + +
Sbjct: 250 GERPDGVTFVGILSACTHMGLVRNGFLHFQSMVDDYLIVPQIEHYGCMVDLLGRAGLINQ 309

Query: 252 ARRLFDQMPIR-NVVAWNAMIAA---YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVR 307
           A  +  +MP+  +VV W A++ A   Y      E A +  IE+   NP ++  + + Y  
Sbjct: 310 AVDIVRKMPMEPDVVIWAALLGACRXYKNVEMAELALQRLIELEPNNPGNFVMLSNIYKD 369

Query: 308 IAKLDEARRL--------LDQMP-YKNIAAQTAMISGYVQNKRMDEANQIF 349
           + +  +  RL          ++P    I    +++  Y  ++R  E + I+
Sbjct: 370 LGRSQDVARLKVAMRDTGFRKVPGCSVIGCNDSVVEFYSLDERHPETDSIY 420



 Score =  115 bits (288), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 151/322 (46%), Gaps = 45/322 (13%)

Query: 251 EARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAK 310
           +A ++F +M  +NV AW A++AA+V    +  A RLF   P+ + V W  ++ GY+ +  
Sbjct: 12  DAYKVFAEMRDKNVFAWTAVVAAHVACHDMVSARRLFDLAPQCDVVLWNVIVSGYIELGD 71

Query: 311 LDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC 370
           +  AR L D+MP  ++ +   ++SGY  N  ++   ++F+++   +V  WN +I GY + 
Sbjct: 72  MVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMPARNVYSWNGLIGGYVRN 131

Query: 371 GRMDEAINLFRQMVNKDIVT-----------------------W---------------- 391
           G   EA+  F++M+   +V                        W                
Sbjct: 132 GLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYKGNLFV 191

Query: 392 -NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
            N +I  YA+   ++ A+ +F+ +   ++ ++WN +I+    +    DAL +F  M + G
Sbjct: 192 GNALIDMYAKCGVIEKALDVFDGL-DVKDIITWNTIINSLAMHXHAADALSLFEGMKRAG 250

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY--VNDLFVGNSLITMYAKCGRI-Q 507
           ++ D  T    LSAC H+  ++ G  +H  ++   Y  V  +     ++ +  + G I Q
Sbjct: 251 ERPDGVTFVGILSACTHMGLVRNGF-LHFQSMVDDYLIVPQIEHYGCMVDLLGRAGLINQ 309

Query: 508 NAELLFKDADPVDVISWNSLIA 529
             +++ K     DV+ W +L+ 
Sbjct: 310 AVDIVRKMPMEPDVVIWAALLG 331



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 156/311 (50%), Gaps = 21/311 (6%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHN 90
           V +A K+F++M  KN   + ++++A+     +  AR+LF+  PQ ++V WN +++GY+  
Sbjct: 10  VADAYKVFAEMRDKNVFAWTAVVAAHVACHDMVSARRLFDLAPQCDVVLWNVIVSGYIEL 69

Query: 91  DKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGY 150
             +  ARELFD+M   D+ SW  +++ Y   GE+E   ++F+ +P + +   WN ++ GY
Sbjct: 70  GDMVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMPAR-NVYSWNGLIGGY 128

Query: 151 AKIGNYNEA-----KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----- 200
            + G + EA     + L+D +   N  +  ++LS  ++ G++ +  K+     +      
Sbjct: 129 VRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIG-KWVHVYADSIGYKG 187

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
           ++   N ++D Y +   ++ A   F  +  +++++W T+++  A +    +A  LF+ M 
Sbjct: 188 NLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGMK 247

Query: 261 IR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-----SWTTMIDGYVRIAKL 311
                 + V +  +++A    G +      F  M +   +      +  M+D   R   +
Sbjct: 248 RAGERPDGVTFVGILSACTHMGLVRNGFLHFQSMVDDYLIVPQIEHYGCMVDLLGRAGLI 307

Query: 312 DEARRLLDQMP 322
           ++A  ++ +MP
Sbjct: 308 NQAVDIVRKMP 318


>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 605

 Score =  334 bits (857), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 187/538 (34%), Positives = 294/538 (54%), Gaps = 14/538 (2%)

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGR---MLEARRLFDQMPIRNV 264
           ++  Y   ++L SA   F ++P+ NV  +  ++  Y+ +G     L A  +  +M +  V
Sbjct: 60  LIASYSLTNNLSSAVNVFNQVPDPNVHLYNYLIRAYSLSGNESNSLCAFGVLLKMHVDGV 119

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSW-----TTMIDGYVRIAKLDEAR 315
           +A N      ++      +    ++M     E+    W      ++ID Y R   ++ A 
Sbjct: 120 LADNFTYPFLLKGCNGSSSWLSLVKMVHAHVEKLGFYWDIFVPNSLIDCYCRCGDVEMAM 179

Query: 316 RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
           ++   M  +++ +  +M+ G V+N  +D A ++FD++   D V WN M+ G+ + G MD+
Sbjct: 180 KVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEMPERDRVSWNTMLDGFTKAGEMDK 239

Query: 376 AINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEF 435
           A  LF +M  +DIV+W+TM+ GY++   MD A  +F+     +N V W  +ISG+ +   
Sbjct: 240 AFKLFERMAERDIVSWSTMVCGYSKNGDMDMARMLFDRC-PVKNLVLWTTIISGYAEKGQ 298

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS 495
             +A+ +   M + G + D       L+ACA    L LG+++H   ++S +     V NS
Sbjct: 299 VKEAMNLCDEMEKSGLRLDDGFFISILAACAESGMLGLGKKMHDSFLRSRFRCSTKVLNS 358

Query: 496 LITMYAKCGRIQNAELLFKDADP-VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP 554
            I MYAKCG + +A  +F       D++SWNS+I G+ I+G+  ++I+LF  MV EG  P
Sbjct: 359 FIDMYAKCGCVDDAFRVFNGMKTEKDLVSWNSMIHGFGIHGHGEKSIELFNTMVREGFKP 418

Query: 555 DPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEM 614
           D  TFIG+L AC+H GLV+ G   F  M  VY I P +EHY CM+DLL R G L EAF +
Sbjct: 419 DRYTFIGLLCACTHAGLVNEGRGYFYSMQRVYGIVPQIEHYGCMVDLLGRGGHLKEAFWL 478

Query: 615 VKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRW 674
           V+ M  +PNA I GTLLGACRMH ++KL     + L +L P     ++LLSN++A++G W
Sbjct: 479 VRSMPFEPNAIILGTLLGACRMHNDVKLATSVSKYLFKLVPSDPGNFSLLSNIYAQSGDW 538

Query: 675 DEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
             V KVR  M   G QK  G S IEV+ ++H F   D    ++ +I N +  L   +R
Sbjct: 539 INVAKVRKQMNDEGGQKPSGVSSIEVEEEVHEFTVRDWSHPKSGDIYNMIDRLVHDLR 596



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 127/468 (27%), Positives = 211/468 (45%), Gaps = 98/468 (20%)

Query: 20  KKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVS 79
           K I     +  +  A+ +F+Q+   N   YN +I AY+ +G  +++   F  + +     
Sbjct: 59  KLIASYSLTNNLSSAVNVFNQVPDPNVHLYNYLIRAYSLSGNESNSLCAFGVLLK----- 113

Query: 80  WNSMIAGYLHNDKVKEARELFDKMFRPDLF-------SWALMITCYTRKGELEKARELFD 132
                   +H D V     L D    P L        SW  ++        +EK    +D
Sbjct: 114 --------MHVDGV-----LADNFTYPFLLKGCNGSSSWLSLVK--MVHAHVEKLGFYWD 158

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
           +          N+++  Y + G+   A K+   M  +++VSWNSM+ G  KNG++  A K
Sbjct: 159 IFVP-------NSLIDCYCRCGDVEMAMKVFSGMEERDVVSWNSMVGGLVKNGDLDGALK 211

Query: 193 FFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA 252
            F+ M ERD VSWN MLDG+ +  ++D A+K F+++ E+++VSW TM+ GY++NG M  A
Sbjct: 212 VFDEMPERDRVSWNTMLDGFTKAGEMDKAFKLFERMAERDIVSWSTMVCGYSKNGDMDMA 271

Query: 253 RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLD 312
           R LFD+ P++N+V W  +I+ Y ++GQ++EA  L  EM +    S   + DG+       
Sbjct: 272 RMLFDRCPVKNLVLWTTIISGYAEKGQVKEAMNLCDEMEK----SGLRLDDGFF------ 321

Query: 313 EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC----WNVMIKGYA 368
                             ++++   ++  +    ++ D        C     N  I  YA
Sbjct: 322 -----------------ISILAACAESGMLGLGKKMHDSFLRSRFRCSTKVLNSFIDMYA 364

Query: 369 QCGRMDEAINLFRQM-VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
           +CG +D+A  +F  M   KD+V+WN+MI G+      + ++++F       NT       
Sbjct: 365 KCGCVDDAFRVFNGMKTEKDLVSWNSMIHGFGIHGHGEKSIELF-------NT------- 410

Query: 428 SGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
                             M +EG K D  T    L AC H   +  GR
Sbjct: 411 ------------------MVREGFKPDRYTFIGLLCACTHAGLVNEGR 440



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 168/330 (50%), Gaps = 23/330 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F  N  I    + G VE A+K+FS M +++ V++NSM+    KNG ++ A K+F++MP+
Sbjct: 159 IFVPNSLIDCYCRCGDVEMAMKVFSGMEERDVVSWNSMVGGLVKNGDLDGALKVFDEMPE 218

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           R+ VSWN+M+ G+    ++ +A +LF++M   D+ SW+ M+  Y++ G+++ AR LFD  
Sbjct: 219 RDRVSWNTMLDGFTKAGEMDKAFKLFERMAERDIVSWSTMVCGYSKNGDMDMARMLFDRC 278

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV----SWNSMLSGYTKNGEMHLA 190
           P K +   W  +++GYA+ G   EA  L D M    +      + S+L+   ++G + L 
Sbjct: 279 PVK-NLVLWTTIISGYAEKGQVKEAMNLCDEMEKSGLRLDDGFFISILAACAESGMLGLG 337

Query: 191 SK----FFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI-PEQNVVSWVTMLSGYAR 245
            K    F  +         N  +D Y +   +D A++ F  +  E+++VSW +M+ G+  
Sbjct: 338 KKMHDSFLRSRFRCSTKVLNSFIDMYAKCGCVDDAFRVFNGMKTEKDLVSWNSMIHGFGI 397

Query: 246 NGRMLEARRLFDQM------PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV--- 296
           +G   ++  LF+ M      P R    +  ++ A    G + E    F  M     +   
Sbjct: 398 HGHGEKSIELFNTMVREGFKPDR--YTFIGLLCACTHAGLVNEGRGYFYSMQRVYGIVPQ 455

Query: 297 --SWTTMIDGYVRIAKLDEARRLLDQMPYK 324
              +  M+D   R   L EA  L+  MP++
Sbjct: 456 IEHYGCMVDLLGRGGHLKEAFWLVRSMPFE 485


>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 661

 Score =  334 bits (857), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 178/481 (37%), Positives = 274/481 (56%), Gaps = 11/481 (2%)

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           ++V+  NA++  Y     +  A  LF EMP+R+ VSWTT++DGY R    DEA R+  +M
Sbjct: 174 QSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCRM 233

Query: 322 PY-----KNIAAQTAMISGYVQNKRMDEANQIFDKIGT----HDVVCWNVMIKGYAQCGR 372
                   N     A++S   Q   +     ++  +        V   N +I  + + G 
Sbjct: 234 VVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADGGVGRSVNLENALIDMFGKFGC 293

Query: 373 MDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
              A  +F  M  KD+ +W TM+  YA+   ++ A ++F++M  RRN VSW+ +I+ + Q
Sbjct: 294 AASAREVFDSMAVKDVYSWTTMVNAYAKCGDLESAARLFDDM-PRRNAVSWSCMIAAYSQ 352

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG-YVNDLF 491
                +A+++F  M +EG +  ++ L   LSACA L  L LGR I+   + SG  V  + 
Sbjct: 353 ANQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAVLTVN 412

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
           +GN+ I +YAKCG    A  LF +    +V+SWNS+I  +A++G + E ++LFE++    
Sbjct: 413 LGNAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTC 472

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
           + PD +TF+G+LSACSH GLV  G + F+ M  +Y IEP  EHYACMIDLL + G L+EA
Sbjct: 473 IVPDEITFLGLLSACSHSGLVSEGRRYFKEMKLIYGIEPKSEHYACMIDLLGKIGLLEEA 532

Query: 612 FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEA 671
           FE+ KGM ++ +   WG LL ACRM+ N+++G  A +KL +L P  +  Y L+S ++A  
Sbjct: 533 FEVAKGMPMETDEAGWGALLNACRMYGNVEIGEFAADKLVQLNPLDSGIYVLMSQIYASK 592

Query: 672 GRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
            +WD+V+ +RV M   G +K PGCS IEV  + H FL  D     + +I   LK +   +
Sbjct: 593 NKWDQVKILRVLMRERGVKKNPGCSSIEVDGKFHEFLVADVSHVHSEDIYAALKNIYFHL 652

Query: 732 R 732
           +
Sbjct: 653 K 653



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 152/295 (51%), Gaps = 17/295 (5%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
           ++ +  N+++  YA +  +  AR LF++MP R++VSW +++ GY       EA  +F +M
Sbjct: 174 QSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCRM 233

Query: 104 -----FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGN 155
                 +P+  +   +++   + G L   R ++  + +          NA++  + K G 
Sbjct: 234 VVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADGGVGRSVNLENALIDMFGKFGC 293

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
              A+++ D+M  K++ SW +M++ Y K G++  A++ F+ M  R+ VSW+ M+  Y + 
Sbjct: 294 AASAREVFDSMAVKDVYSWTTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQA 353

Query: 216 DDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFDQMPIR-----NVVA 266
           +  + A + F+ + E+ V       V++LS  A+ G +   R ++D   I       V  
Sbjct: 354 NQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAVLTVNL 413

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
            NA I  Y + G  + A++LF EM ERN VSW +MI  +    + +E  RL +Q+
Sbjct: 414 GNAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQL 468



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 142/296 (47%), Gaps = 49/296 (16%)

Query: 168 SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK 227
           +++++  N+++  Y  +  +  A   F+ M +RDVVSW  ++DGY      D AW+ F +
Sbjct: 173 AQSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAWRVFCR 232

Query: 228 IP-----EQNVVSWVTMLS-----GYARNGRML--------------------------- 250
           +      + N V+ V ++S     G    GRM+                           
Sbjct: 233 MVVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADGGVGRSVNLENALIDMFGKFG 292

Query: 251 ---EARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVR 307
               AR +FD M +++V +W  M+ AY + G +E AARLF +MP RN VSW+ MI  Y +
Sbjct: 293 CAASAREVFDSMAVKDVYSWTTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQ 352

Query: 308 IAKLDEARRLLDQMPYKNI----AAQTAMISGYVQNKRMDEANQIFDKI-----GTHDVV 358
             + +EA RL   M  + +    A   +++S   Q   +D    I+D           V 
Sbjct: 353 ANQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAVLTVN 412

Query: 359 CWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
             N  I  YA+CG  D A  LF +M  +++V+WN+MI  +A   Q ++ +++FE++
Sbjct: 413 LGNAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQL 468



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 157/323 (48%), Gaps = 23/323 (7%)

Query: 114 MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP-----S 168
           ++  Y     L  AR LFD +P++ D   W  +V GYA+ G  +EA ++   M       
Sbjct: 182 LVHFYANHRSLAHARNLFDEMPDR-DVVSWTTLVDGYARRGLADEAWRVFCRMVVAGGLQ 240

Query: 169 KNIVSWNSMLSGYTKNGEMHLASKFFEAMEE----RDVVSWNLMLDGYVELDDLDSAWKF 224
            N V+  +++S   + G +      +  + +    R V   N ++D + +     SA + 
Sbjct: 241 PNEVTLVAVVSAMGQMGLLAFGRMVYRYVADGGVGRSVNLENALIDMFGKFGCAASAREV 300

Query: 225 FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA 284
           F  +  ++V SW TM++ YA+ G +  A RLFD MP RN V+W+ MIAAY Q  Q EEA 
Sbjct: 301 FDSMAVKDVYSWTTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAV 360

Query: 285 RLFIEMPERN--PVS--WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT-----AMISG 335
           RLF  M E    P++    +++    ++  LD  R + D       A  T     A I  
Sbjct: 361 RLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAVLTVNLGNAFIDV 420

Query: 336 YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTW 391
           Y +    D A+++F ++   +VV WN MI  +A  G+ +E + LF Q+    +  D +T+
Sbjct: 421 YAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDEITF 480

Query: 392 NTMIAGYAQIRQMDDAVKIFEEM 414
             +++  +    + +  + F+EM
Sbjct: 481 LGLLSACSHSGLVSEGRRYFKEM 503



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 145/310 (46%), Gaps = 41/310 (13%)

Query: 9   GNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKL 68
           G  G  V  +N  I   GK G    A ++F  M+ K+  ++ +M++AYAK G +  A +L
Sbjct: 272 GGVGRSVNLENALIDMFGKFGCAASAREVFDSMAVKDVYSWTTMVNAYAKCGDLESAARL 331

Query: 69  FEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGEL 124
           F+ MP+RN VSW+ MIA Y   ++ +EA  LF  M      P       +++   + G L
Sbjct: 332 FDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCL 391

Query: 125 EKARELFD--LLPNKE--DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG 180
           +  R ++D  ++  K        NA +  YAK G+++ A KL   M  +N+VSWNSM+  
Sbjct: 392 DLGRWIYDNYVISGKAVLTVNLGNAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMA 451

Query: 181 YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
           +  +G+     + FE ++   +V                         P++  ++++ +L
Sbjct: 452 HAVHGQSEEVLRLFEQLKGTCIV-------------------------PDE--ITFLGLL 484

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVA-----WNAMIAAYVQRGQIEEAARLFIEMP-ERN 294
           S  + +G + E RR F +M +   +      +  MI    + G +EEA  +   MP E +
Sbjct: 485 SACSHSGLVSEGRRYFKEMKLIYGIEPKSEHYACMIDLLGKIGLLEEAFEVAKGMPMETD 544

Query: 295 PVSWTTMIDG 304
              W  +++ 
Sbjct: 545 EAGWGALLNA 554



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 150/370 (40%), Gaps = 71/370 (19%)

Query: 384 VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
           V + ++  N ++  YA  R +  A  +F+EM   R+ VSW  L+ G+ +     +A ++F
Sbjct: 172 VAQSVLVGNALVHFYANHRSLAHARNLFDEM-PDRDVVSWTTLVDGYARRGLADEAWRVF 230

Query: 444 VLMTQEGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGY---------------- 486
             M   G  + +  TL   +SA   +  L  GR ++      G                 
Sbjct: 231 CRMVVAGGLQPNEVTLVAVVSAMGQMGLLAFGRMVYRYVADGGVGRSVNLENALIDMFGK 290

Query: 487 ---------------VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGY 531
                          V D++   +++  YAKCG +++A  LF D    + +SW+ +IA Y
Sbjct: 291 FGCAASAREVFDSMAVKDVYSWTTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCMIAAY 350

Query: 532 AINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL 591
           +      EA++LF+ M+ EGV P     + VLSAC+ +G +D G  +++           
Sbjct: 351 SQANQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAVLT 410

Query: 592 VEHYACMIDLLSRAGRLDEA----------------------------------FEMVKG 617
           V      ID+ ++ G  D A                                  FE +KG
Sbjct: 411 VNLGNAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKG 470

Query: 618 MKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLS---ELEPQKTSCYALLSNMHAEAGRW 674
             I P+   +  LL AC     +  GR   +++     +EP K+  YA + ++  + G  
Sbjct: 471 TCIVPDEITFLGLLSACSHSGLVSEGRRYFKEMKLIYGIEP-KSEHYACMIDLLGKIGLL 529

Query: 675 DEVEKVRVSM 684
           +E  +V   M
Sbjct: 530 EEAFEVAKGM 539



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 15/163 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I    K G  + A K+F++M+++N V++NSMI A+A +G+  +  +LFEQ+    +V
Sbjct: 415 NAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIV 474

Query: 79  ----SWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARE 129
               ++  +++   H+  V E R  F +M       P    +A MI    + G LE+A E
Sbjct: 475 PDEITFLGLLSACSHSGLVSEGRRYFKEMKLIYGIEPKSEHYACMIDLLGKIGLLEEAFE 534

Query: 130 LFDLLPNKEDTACWNAMV-----AGYAKIGNYNEAKKLLDAMP 167
           +   +P + D A W A++      G  +IG +  A KL+   P
Sbjct: 535 VAKGMPMETDEAGWGALLNACRMYGNVEIGEF-AADKLVQLNP 576


>gi|345505220|gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]
          Length = 612

 Score =  334 bits (857), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 175/460 (38%), Positives = 270/460 (58%), Gaps = 11/460 (2%)

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY--KN 325
           N +I  Y++ G +  A ++F  MP R+ VS+ +MIDGYV+   ++ AR L D MP   KN
Sbjct: 160 NCLIGLYIKCGCLGYARQVFDRMPRRDSVSYNSMIDGYVKCGMIESARGLFDLMPKEKKN 219

Query: 326 IAAQTAMISGYVQNKR-MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
           + +   MISGY Q    ++ A ++FD++   D++ WN +I GY + GRM++A +LF +M 
Sbjct: 220 LISWNFMISGYAQRADGVNVAKKLFDEMPEKDLISWNSLIDGYVKHGRMEDAKSLFNKMP 279

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
            +D+VTW TM+ GYA++  +  A  +F+ M   R+ V++N++I+G++QN +H +A+ IF 
Sbjct: 280 KRDVVTWATMVDGYAKLGFVHQAKSLFDRM-PLRDVVAYNSMITGYVQNRYHKEAIGIFN 338

Query: 445 LMTQEGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
            M +E     D +TL   LSA A L  L     IH   + + +     +G +LI  Y+KC
Sbjct: 339 DMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVALIDTYSKC 398

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
           G IQ +  +F++ +   +  WN++I G AI+G    A  +  ++    + PD +TFIGVL
Sbjct: 399 GSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSIKPDDITFIGVL 458

Query: 564 SACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPN 623
           +ACSH GLV  GL  FE M   + IEP ++HY CM+D+LSR+G ++ A  +++ M I+PN
Sbjct: 459 NACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCMVDILSRSGSIELAKNLIEEMPIEPN 518

Query: 624 AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVS 683
             IW T L AC  H+  + G +  + L        S + LLSNM+A  G W EV +VR +
Sbjct: 519 DVIWRTFLTACSNHKEFETGELVAKHLFLQGGYNPSSFVLLSNMYASFGMWKEVRRVRTT 578

Query: 684 MEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNT 723
           M+    +K PGCSWIE+   +H F         T E+ NT
Sbjct: 579 MKERKLRKIPGCSWIELDGNVHEFF------VDTMELSNT 612



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 134/468 (28%), Positives = 234/468 (50%), Gaps = 79/468 (16%)

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           DL+    +I  Y + G L  AR++FD +P + D+  +N+M+ GY K G    A+ L D M
Sbjct: 155 DLYLQNCLIGLYIKCGCLGYARQVFDRMP-RRDSVSYNSMIDGYVKCGMIESARGLFDLM 213

Query: 167 PS--KNIVSWNSMLSGYTKNGE-MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWK 223
           P   KN++SWN M+SGY +  + +++A K F+ M E+D++SWN ++DGYV+   ++ A  
Sbjct: 214 PKEKKNLISWNFMISGYAQRADGVNVAKKLFDEMPEKDLISWNSLIDGYVKHGRMEDAKS 273

Query: 224 FFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEA 283
            F K+P+++VV+W TM+ GYA+ G + +A+ LFD+MP+R+VVA+N+MI  YVQ    +EA
Sbjct: 274 LFNKMPKRDVVTWATMVDGYAKLGFVHQAKSLFDRMPLRDVVAYNSMITGYVQNRYHKEA 333

Query: 284 ARLFIEMPERNPVS--WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKR 341
             +F +M + + +S   TT++     IA+L    + +D             I  Y+    
Sbjct: 334 IGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVD-------------IHLYI---- 376

Query: 342 MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQI 401
           MD   ++  K+G         +I  Y++CG + +++ +F ++ NK I  WN MI G A  
Sbjct: 377 MDNKFRLGGKLGV-------ALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLA-- 427

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
                                    I G  ++ F +      + + +   K D  T    
Sbjct: 428 -------------------------IHGLGESAFDM-----LLQIEKRSIKPDDITFIGV 457

Query: 462 LSACAH-------LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
           L+AC+H       L   +L R+ H +  K  +         ++ + ++ G I+ A+ L +
Sbjct: 458 LNACSHSGLVKEGLLCFELMRRKHKIEPKLQHY------GCMVDILSRSGSIELAKNLIE 511

Query: 515 DA--DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
           +   +P DVI W + +   + N    E  +L  + +      +P +F+
Sbjct: 512 EMPIEPNDVI-WRTFLTACS-NHKEFETGELVAKHLFLQGGYNPSSFV 557



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/294 (33%), Positives = 162/294 (55%), Gaps = 13/294 (4%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S ++ QN  I    K G +  A ++F +M ++++V+YNSMI  Y K G +  AR LF+ M
Sbjct: 154 SDLYLQNCLIGLYIKCGCLGYARQVFDRMPRRDSVSYNSMIDGYVKCGMIESARGLFDLM 213

Query: 73  P--QRNLVSWNSMIAGYLHN-DKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARE 129
           P  ++NL+SWN MI+GY    D V  A++LFD+M   DL SW  +I  Y + G +E A+ 
Sbjct: 214 PKEKKNLISWNFMISGYAQRADGVNVAKKLFDEMPEKDLISWNSLIDGYVKHGRMEDAKS 273

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           LF+ +P K D   W  MV GYAK+G  ++AK L D MP +++V++NSM++GY +N     
Sbjct: 274 LFNKMP-KRDVVTWATMVDGYAKLGFVHQAKSLFDRMPLRDVVAYNSMITGYVQNRYHKE 332

Query: 190 ASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTML 240
           A   F  ME+      D  +  ++L    +L  L  A      I +          V ++
Sbjct: 333 AIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVALI 392

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
             Y++ G + ++ R+F+++  +++  WNAMI      G  E A  + +++ +R+
Sbjct: 393 DTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRS 446



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 116/415 (27%), Positives = 206/415 (49%), Gaps = 51/415 (12%)

Query: 29  GRVEEAIKIFSQMSQ----KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMI 84
           G V+E ++I   + +     +    N +I  Y K G +  AR++F++MP+R+ VS+NSMI
Sbjct: 135 GFVKEGMQIHGFLRKTGIWSDLYLQNCLIGLYIKCGCLGYARQVFDRMPRRDSVSYNSMI 194

Query: 85  AGYLHNDKVKEARELFDKMF--RPDLFSWALMITCYTRKGE-LEKARELFDLLPNKEDTA 141
            GY+    ++ AR LFD M   + +L SW  MI+ Y ++ + +  A++LFD +P K D  
Sbjct: 195 DGYVKCGMIESARGLFDLMPKEKKNLISWNFMISGYAQRADGVNVAKKLFDEMPEK-DLI 253

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
            WN+++ GY K G   +AK L + MP +++V+W +M+ GY K G +H A   F+ M  RD
Sbjct: 254 SWNSLIDGYVKHGRMEDAKSLFNKMPKRDVVTWATMVDGYAKLGFVHQAKSLFDRMPLRD 313

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEA---- 252
           VV++N M+ GYV+      A   F  + +++ +S      V +LS  A+ GR+ +A    
Sbjct: 314 VVAYNSMITGYVQNRYHKEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIH 373

Query: 253 -------RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGY 305
                   RL  ++ +       A+I  Y + G I+++ R+F E+  ++   W  MI G 
Sbjct: 374 LYIMDNKFRLGGKLGV-------ALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGL 426

Query: 306 VRIAKLDEARRLLDQMPYKNIAAQTAMI---------SGYVQN-----KRMDEANQIFDK 351
                 + A  +L Q+  ++I                SG V+      + M   ++I  K
Sbjct: 427 AIHGLGESAFDMLLQIEKRSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPK 486

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAGYAQIRQMD 405
           +       +  M+   ++ G ++ A NL  +M +  + V W T +   +  ++ +
Sbjct: 487 LQH-----YGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSNHKEFE 536



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 163/330 (49%), Gaps = 23/330 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I    K GR+E+A  +F++M +++ VT+ +M+  YAK G V+ A+ LF++MP R++V
Sbjct: 256 NSLIDGYVKHGRMEDAKSLFNKMPKRDVVTWATMVDGYAKLGFVHQAKSLFDRMPLRDVV 315

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKAREL-FD 132
           ++NSMI GY+ N   KEA  +F+ M       PD  +  ++++   + G L KA ++   
Sbjct: 316 AYNSMITGYVQNRYHKEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLY 375

Query: 133 LLPNKEDTA--CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           ++ NK         A++  Y+K G+  ++ ++ + + +K+I  WN+M+ G   +G    A
Sbjct: 376 IMDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESA 435

Query: 191 SKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLS 241
                 +E+R    D +++  +L+       +      F+ +  ++ +      +  M+ 
Sbjct: 436 FDMLLQIEKRSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCMVD 495

Query: 242 GYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEE----AARLFIEMPERNPV 296
             +R+G +  A+ L ++MPI  N V W   + A     + E     A  LF++    NP 
Sbjct: 496 ILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSNHKEFETGELVAKHLFLQ-GGYNPS 554

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
           S+  + + Y       E RR+   M  + +
Sbjct: 555 SFVLLSNMYASFGMWKEVRRVRTTMKERKL 584



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 98/217 (45%), Gaps = 7/217 (3%)

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
           G   +   WNA+I           AL +F LM + G   D  +L+  L AC+ L  ++ G
Sbjct: 81  GDFEDPFLWNAVIKSHSHGLDPRKALLLFCLMLETGVSVDKFSLSLVLKACSRLGFVKEG 140

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
            QIH    K+G  +DL++ N LI +Y KCG +  A  +F      D +S+NS+I GY   
Sbjct: 141 MQIHGFLRKTGIWSDLYLQNCLIGLYIKCGCLGYARQVFDRMPRRDSVSYNSMIDGYVKC 200

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEH 594
           G    A  LF+ M  E        F+ +         V+   KLF+ M E   I      
Sbjct: 201 GMIESARGLFDLMPKEKKNLISWNFM-ISGYAQRADGVNVAKKLFDEMPEKDLIS----- 254

Query: 595 YACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           +  +ID   + GR+++A  +   M  K +   W T++
Sbjct: 255 WNSLIDGYVKHGRMEDAKSLFNKMP-KRDVVTWATMV 290



 Score = 41.2 bits (95), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 9/112 (8%)

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL---------LFKDADPVDVISWNS 526
           +IH   I +G++ +  +   ++  +A   R   AE          +  + D  D   WN+
Sbjct: 32  KIHARLITNGFIKNPNLTTRIVLDFADSRRSYLAEFARFVFHEYHVCSNGDFEDPFLWNA 91

Query: 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
           +I  ++   +  +A+ LF  M+  GV+ D  +   VL ACS +G V  G+++
Sbjct: 92  VIKSHSHGLDPRKALLLFCLMLETGVSVDKFSLSLVLKACSRLGFVKEGMQI 143


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  334 bits (857), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 188/555 (33%), Positives = 292/555 (52%), Gaps = 52/555 (9%)

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIE 289
             NV +  +++  Y R GR+ EA R+FD+MP R+V AWNAM++   +  +  +A  L   
Sbjct: 99  HPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGR 158

Query: 290 MPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ--------TAMISGYVQNKR 341
           M           +   + +  +   R L   M    +            A+I  Y +   
Sbjct: 159 MVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGM 218

Query: 342 MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK--------------- 386
           + EA+ +F  +   D+V WN +I    Q G++  A+ LF  M+                 
Sbjct: 219 LTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASA 278

Query: 387 -------------------------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
                                    DI+  N M+  YA++ ++D A K+F+ +   R+ V
Sbjct: 279 VAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNL-PDRDVV 337

Query: 422 SWNALISGFLQNEFHLDALKIFVLM-TQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
           SWN LI+G++QN    +A++I+  M   EG K    T    L A ++L  LQ G ++H L
Sbjct: 338 SWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHAL 397

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEA 540
           +IK+G   D++V   LI +YAKCG++  A  LF+         WN++IAG  ++G+  +A
Sbjct: 398 SIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKA 457

Query: 541 IKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMID 600
           + LF +M  E + PD VTF+ +L+ACSH GLVD G   F+ M  VY I P+ +HY CM+D
Sbjct: 458 LSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVD 517

Query: 601 LLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSC 660
           +L RAG+LDEAFE ++ M IKP++ +WG LLGACR+H N+++G++A + L EL+P+    
Sbjct: 518 MLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGY 577

Query: 661 YALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTA-- 718
           Y L+SNM+A+ G+WD V+ VR  +     QK PG S +EVK  +  F SG   +      
Sbjct: 578 YVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVFYSGTQTEPHPQHE 637

Query: 719 EICNTLKTLAAQIRN 733
           EI   L  L A++++
Sbjct: 638 EIQRGLHDLLAKMKS 652



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 115/487 (23%), Positives = 218/487 (44%), Gaps = 85/487 (17%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
             N     S++ AY + GRV +A ++F++MP+R++ +WN+M++G   N +  +A  L  +
Sbjct: 99  HPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGR 158

Query: 103 MFRPDLFSWALMITCYTRKGELEKARELFDLLP--------NKEDTACWNAMVAGYAKIG 154
           M    +   A+ ++       +   R L  ++         + E   C NA++  Y K+G
Sbjct: 159 MVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVC-NALIDVYGKLG 217

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER-------------- 200
              EA  +   M  +++V+WNS++S   + G++  A + F  M E               
Sbjct: 218 MLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLAS 277

Query: 201 --------------------------DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
                                     D+++ N M+D Y ++  +D+A K F  +P+++VV
Sbjct: 278 AVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVV 337

Query: 235 SWVTMLSGYARNGRMLEARRLFDQM-------PIRNVVAWNAMIAAYVQRGQIEEAAR-- 285
           SW T+++GY +NG   EA R+++ M       PI+    + +++ AY   G +++  R  
Sbjct: 338 SWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGT--FVSVLPAYSYLGGLQQGMRMH 395

Query: 286 -LFIEMPERNPVSWTT-MIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMD 343
            L I+      V  TT +ID Y +  KL EA  L + MP ++     A+I+G   +    
Sbjct: 396 ALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGA 455

Query: 344 EANQIFDKIGTHDV----VCWNVMIKGYAQCGRMDEAINLFRQMVN-KDIVT----WNTM 394
           +A  +F ++   ++    V +  ++   +  G +D+  + F  M     IV     +  M
Sbjct: 456 KALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCM 515

Query: 395 IAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFL------------QNEFHLDALKI 442
           +    +  Q+D+A +  + M  + ++  W AL+                QN F LD   +
Sbjct: 516 VDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENV 575

Query: 443 --FVLMT 447
             +VLM+
Sbjct: 576 GYYVLMS 582



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 119/500 (23%), Positives = 205/500 (41%), Gaps = 106/500 (21%)

Query: 103 MFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKL 162
           +  P++F+   ++  Y R G + +A  +FD +P + D   WNAM++G  +     +A  L
Sbjct: 97  LLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPER-DVPAWNAMLSGLCRNTRAADAVTL 155

Query: 163 LDAMPSKNIVS---------------------------------------WNSMLSGYTK 183
           L  M  + +                                          N+++  Y K
Sbjct: 156 LGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGK 215

Query: 184 NGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTM 239
            G +  A   F  M  RD+V+WN ++    +   + +A + F  + E     +V++ V++
Sbjct: 216 LGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSL 275

Query: 240 LSGYARNGRMLEA--------RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
            S  A+ G  L A        RR +D   + +++A NAM+  Y +  +I+ A ++F  +P
Sbjct: 276 ASAVAQCGDELGAKSVHCYVRRRGWD---VGDIIAGNAMVDMYAKMSKIDAAQKVFDNLP 332

Query: 292 ERNPVSWTTMIDGYVRIAKLDEARRLLDQM-----------PYKNIAAQTAMISGYVQNK 340
           +R+ VSW T+I GY++    +EA R+ + M            + ++    + + G  Q  
Sbjct: 333 DRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGM 392

Query: 341 RMDEANQIFDKIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYA 399
           RM   + +  K G + DV     +I  YA+CG++ EA+ LF  M  +    WN +IAG  
Sbjct: 393 RM---HALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLG 449

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
                          G +                     AL +F  M QE  K DH T  
Sbjct: 450 -----------VHGHGAK---------------------ALSLFSQMQQEEIKPDHVTFV 477

Query: 460 CALSACAHLAALQLGRQIHHL-AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
             L+AC+H   +  GR    L     G V        ++ M  + G++  A   F  + P
Sbjct: 478 SLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEA-FEFIQSMP 536

Query: 519 V--DVISWNSLIAGYAINGN 536
           +  D   W +L+    I+GN
Sbjct: 537 IKPDSAVWGALLGACRIHGN 556



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 11/163 (6%)

Query: 476 QIHHLAIKSGYVN-DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
           Q+H  A++ G ++ ++F   SL+  Y + GR+  A  +F +    DV +WN++++G   N
Sbjct: 87  QLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRN 146

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLV-- 592
             A +A+ L   MV EGVA D VT   VL  C  V L D  L L   +  VYA++  +  
Sbjct: 147 TRAADAVTLLGRMVGEGVAGDAVTLSSVLPMC--VVLGDRALAL---VMHVYAVKHGLSG 201

Query: 593 EHYAC--MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
           E + C  +ID+  + G L EA  +  GM ++ +   W +++ A
Sbjct: 202 ELFVCNALIDVYGKLGMLTEAHWVFGGMALR-DLVTWNSIISA 243



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL----VSWNS 82
           K G++ EA+ +F  M +++T  +N++I+    +G    A  LF QM Q  +    V++ S
Sbjct: 419 KCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVS 478

Query: 83  MIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
           ++A   H   V + R  FD M       P    +  M+    R G+L++A E    +P K
Sbjct: 479 LLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIK 538

Query: 138 EDTACWNAMVAGYAKIGNYNEAK 160
            D+A W A++      GN    K
Sbjct: 539 PDSAVWGALLGACRIHGNVEMGK 561


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  334 bits (857), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 212/751 (28%), Positives = 366/751 (48%), Gaps = 86/751 (11%)

Query: 51   SMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF- 109
            +++  Y   G V +A+KLFE+MP  N+VSW S++ GY  +    E   ++ +M +  +  
Sbjct: 886  ALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSG 945

Query: 110  SWALMITCYTRKGELEKARELFDLLPN------KEDTACWNAMVAGYAKIGNYNEAKKLL 163
            +     T  +  G LE     + +L +      ++  +  N++++ ++   +  EA  + 
Sbjct: 946  NQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVF 1005

Query: 164  DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE-------------------RDVVS 204
            D M   +I+SWN+M+S Y  +G    + + F  M                      D + 
Sbjct: 1006 DHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLK 1065

Query: 205  WNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV 264
            W   + G V    LDS           NV    T+L+ Y+  GR  +A  +F  M  R++
Sbjct: 1066 WGRGIHGLVVKLGLDS-----------NVCICNTLLTLYSEAGRSEDAELVFQAMTERDL 1114

Query: 265  VAWNAMIAAYVQRGQIEEAARLFIEMPE-----------------RNP------------ 295
            ++WN+M+A YVQ G+  +  ++  E+ +                  NP            
Sbjct: 1115 ISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHAL 1174

Query: 296  ----------VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
                      +    ++  Y ++  + EA+++L  MP  +     A+I G+ +N+  +EA
Sbjct: 1175 IIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEA 1234

Query: 346  NQIFDKIGTHDVVC-WNVMIKGYAQCGRMDEAI--------NLFRQMVNKDIVTWNTMIA 396
             + +  I    +   +  M+     C   D+ +        ++       D    N++I 
Sbjct: 1235 VKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLIT 1294

Query: 397  GYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHS 456
             YA+   ++ +  IF+ +G + + ++WNA+++    +    +ALKIF  M   G   D  
Sbjct: 1295 MYAKCGDLNSSNYIFDGLGNK-SPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQF 1353

Query: 457  TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
            + +  L+A A+LA L+ G+Q+H L IK G+ +DL V N+ + MY KCG + +   +    
Sbjct: 1354 SFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQP 1413

Query: 517  DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGL 576
                 +SWN LI+ +A +G   +A + F EM+  G  PD VTF+ +LSAC+H GLVD GL
Sbjct: 1414 INRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGL 1473

Query: 577  KLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRM 636
              ++ MT  + + P +EH  C+IDLL R+GRL  A   +K M + PN   W +LL ACR+
Sbjct: 1474 AYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRI 1533

Query: 637  HQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCS 696
            H N++L R   E L EL+P   S Y L SN+ A +G+W++VE +R  M  +  +KQP CS
Sbjct: 1534 HGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACS 1593

Query: 697  WIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
            W+++K+++H+F  G+    + + I   L  L
Sbjct: 1594 WVKLKDKVHSFGMGEKYHPQASRISAKLGEL 1624



 Score =  271 bits (693), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 164/510 (32%), Positives = 272/510 (53%), Gaps = 51/510 (10%)

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSW 298
           Y + G ++ AR +FD MP R+VV+W AM++ Y Q G+ E+A  LF +M     + N  ++
Sbjct: 75  YVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTY 134

Query: 299 TTMIDGYVRIAKLD---EARRLLDQMPY-KNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
            + +     +  LD   + +  + +  + +N+  ++A++  + +  +M++A+ +F  +  
Sbjct: 135 GSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMME 194

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMV------------------------------ 384
            DVV WN MI GYA  G  D++  +FR M+                              
Sbjct: 195 RDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQI 254

Query: 385 ----------NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
                     + DIVT   +I  YA+   +  A  + + M K+ +  S  ALI+G+    
Sbjct: 255 HGIITQLGYGSYDIVT-GLLINAYAKNGSLRSAKDLRKGMLKK-DLFSSTALITGYAHEG 312

Query: 435 -FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG 493
            + +DAL +F  M Q     D   L   L+ CA+LA+  LG QIH  A+K     D+ +G
Sbjct: 313 IYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALKYQPSYDVAMG 372

Query: 494 NSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA 553
           N+LI MYAK G I++A+  F + +  +VISW SLI+GYA +G    A+ L+++M  +G  
Sbjct: 373 NALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFK 432

Query: 554 PDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFE 613
           P+ VTF+ +L ACSH GL   G + F  M   Y I+P  EHY+CM+DL +R G L+EA+ 
Sbjct: 433 PNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYN 492

Query: 614 MVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGR 673
           ++  + IK NA +WG +LGA  ++  + LG+ A   L  ++P+ +  Y +L+++++ AG 
Sbjct: 493 LLCKIDIKHNASLWGAILGASSIYGYMSLGKEAASNLFNMQPENSVNYVVLASIYSAAGL 552

Query: 674 WDEVEKVRVSMEGSGAQKQPGCSWIEVKNQ 703
           WD+  K+R  ME    +K  G S+ +   +
Sbjct: 553 WDDAWKIRKLMEERSTKKNAGYSFFQATKK 582



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 172/677 (25%), Positives = 317/677 (46%), Gaps = 79/677 (11%)

Query: 50   NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----R 105
            N++I+ Y+K G +  AR +F++M  RN  SW++M++GY+     +EA  LF +M+     
Sbjct: 783  NTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVE 842

Query: 106  PDLFSWALMITCYTRKGEL-EKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKK 161
            P+ F  A +IT  +R G + ++  ++   +       D     A+V  Y  IG    A+K
Sbjct: 843  PNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQK 902

Query: 162  LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV-----------VSWNLMLD 210
            L + MP  N+VSW S++ GY+ +G        ++ M +  V            S  L+ D
Sbjct: 903  LFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLED 962

Query: 211  ---GYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
               GY  L  +   + F   +   N  S ++M S ++    + EA  +FD M   ++++W
Sbjct: 963  QVLGYQVLGHIIQ-YGFEDSVSVAN--SLISMFSSFS---SVEEACYVFDHMNECDIISW 1016

Query: 268  NAMIAAYVQRGQIEEAARLFIEMPE-RNPVSWTTMIDGYVRIAKLDEAR--RLLDQMPYK 324
            NAMI+AY   G   E+ R F  M    N  + TT+       + +D  +  R +  +  K
Sbjct: 1017 NAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVK 1076

Query: 325  -----NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
                 N+     +++ Y +  R ++A  +F  +   D++ WN M+  Y Q G+  + + +
Sbjct: 1077 LGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKI 1136

Query: 380  FRQMV---------------------------------------NKDIVTWNTMIAGYAQ 400
              +++                                       +  ++  N ++  Y +
Sbjct: 1137 LAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGK 1196

Query: 401  IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
            +  M +A K+ + M  + + V+WNALI G  +NE   +A+K + L+ ++G  A++ T+  
Sbjct: 1197 LGMMMEAKKVLQTM-PQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVS 1255

Query: 461  ALSAC-AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
             L AC A    L+ G  IH   + +G+ +D +V NSLITMYAKCG + ++  +F      
Sbjct: 1256 VLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNK 1315

Query: 520  DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
              I+WN+++A  A +G   EA+K+F EM   GV  D  +F G L+A +++ +++ G +L 
Sbjct: 1316 SPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLH 1375

Query: 580  ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
              + ++   E  +      +D+  + G + +  +M+    I  +   W  L+ A   H  
Sbjct: 1376 GLVIKL-GFESDLHVTNAAMDMYGKCGEMHDVLKMLP-QPINRSRLSWNILISAFARHGC 1433

Query: 640  IKLGRIAVEKLSELEPQ 656
             +  R    ++ +L P+
Sbjct: 1434 FQKARETFHEMLKLGPK 1450



 Score =  175 bits (443), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 120/484 (24%), Positives = 217/484 (44%), Gaps = 88/484 (18%)

Query: 171  IVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI-- 228
            I   N++++ Y+K G +  A   F+ M  R+  SW+ ML GYV +   + A   F ++  
Sbjct: 779  IFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWG 838

Query: 229  --PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-----NVVAWNAMIAAYVQRGQIE 281
               E N     ++++  +R+G M +         ++     +V    A++  Y   G + 
Sbjct: 839  LGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVY 898

Query: 282  EAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ------------ 329
             A +LF EMP+ N VSWT+++ GY       E   +  +M  + ++              
Sbjct: 899  NAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCG 958

Query: 330  ---------------------------TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNV 362
                                        ++IS +     ++EA  +FD +   D++ WN 
Sbjct: 959  LLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNA 1018

Query: 363  MIKGYAQCGRMDEAINLFRQM--------------------------------------- 383
            MI  YA  G   E++  F  M                                       
Sbjct: 1019 MISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLG 1078

Query: 384  VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
            ++ ++   NT++  Y++  + +DA  +F+ M   R+ +SWN++++ ++Q+   LD LKI 
Sbjct: 1079 LDSNVCICNTLLTLYSEAGRSEDAELVFQAM-TERDLISWNSMMACYVQDGKCLDGLKIL 1137

Query: 444  VLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
              + Q GK  +H T A AL+AC++   L   + +H L I +G+ + L VGN+L+TMY K 
Sbjct: 1138 AELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKL 1197

Query: 504  GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
            G +  A+ + +     D ++WN+LI G+A N    EA+K ++ +  +G+  + +T + VL
Sbjct: 1198 GMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVL 1257

Query: 564  SACS 567
             ACS
Sbjct: 1258 GACS 1261



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 158/658 (24%), Positives = 292/658 (44%), Gaps = 94/658 (14%)

Query: 19   NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR--- 75
            N  I    KSG +E+A + F +M +KN +++ S+IS YAK+G  + A  L+++M  +   
Sbjct: 373  NALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFK 432

Query: 76   -NLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARE 129
             N V++ S++    H     E  E F+ M      +P    ++ M+  + R+G LE+A  
Sbjct: 433  PNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYN 492

Query: 130  LFDLLPNKEDTACWNAMVA-----GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
            L   +  K + + W A++      GY  +G   EA   L  M  +N V++  + S Y+  
Sbjct: 493  LLCKIDIKHNASLWGAILGASSIYGYMSLGK--EAASNLFNMQPENSVNYVVLASIYSAA 550

Query: 185  GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ----KIPEQNVVSWVT-- 238
            G    A K  + MEER                  ++ + FFQ     IP   V   V+  
Sbjct: 551  GLWDDAWKIRKLMEERSTKK--------------NAGYSFFQATKKSIPLLQVQHGVSRR 596

Query: 239  ----------MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG-----QIEEA 283
                       LS             + +   +     W +     VQ        ++E 
Sbjct: 597  DFNILDFGAIFLSNRTPQEECFPDTFVLEPSFLPPSAVWKSSDHRSVQLNGNLTVSVDEV 656

Query: 284  ARLF----IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQN 339
                    +E P+   V   T    +  ++ +  A  L+++ P +N A Q       V++
Sbjct: 657  GSALGMRQVEKPK--TVGSHTGQKQWAPVSTITTASALINETPVENFAEQ-------VKD 707

Query: 340  KRMDEANQIFDKIGTHD----------------VVCWNVM---IKGYAQCGRM--DEAIN 378
              +  +N    + G  D                + C N +   +KG+++       +A++
Sbjct: 708  DDLKTSNAGSRRWGCLDGDIAKVFLQQQHTDYGIRCLNAVNFPLKGFSEITSQMAGKALH 767

Query: 379  LFRQM--VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
             F  +  VN  I   NT+I  Y++   ++ A  +F+EM + RN  SW+ ++SG+++   +
Sbjct: 768  AFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEM-RHRNEASWSTMLSGYVRVGLY 826

Query: 437  LDALKIFVLMTQEGKKADHSTLACALSACAHLAAL-QLGRQIHHLAIKSGYVNDLFVGNS 495
             +A+ +F  M   G + +   +A  ++AC+    +   G Q+H   +K+G + D++VG +
Sbjct: 827  EEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTA 886

Query: 496  LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555
            L+  Y   G + NA+ LF++    +V+SW SL+ GY+ +GN  E + +++ M  EGV+ +
Sbjct: 887  LVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGN 946

Query: 556  PVTFIGVLSACSHVGLVDGGLKLFECMTEV--YAIEPLVEHYACMIDLLSRAGRLDEA 611
              TF  V S+C   GL++  +  ++ +  +  Y  E  V     +I + S    ++EA
Sbjct: 947  QNTFATVTSSC---GLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEA 1001



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 141/619 (22%), Positives = 250/619 (40%), Gaps = 145/619 (23%)

Query: 19   NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ---- 74
            N  I+       VEEA  +F  M++ + +++N+MISAYA +G   ++ + F  M      
Sbjct: 986  NSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNE 1045

Query: 75   -----------------------------------RNLVSWNSMIAGYLHNDKVKEAREL 99
                                                N+   N+++  Y    + ++A  +
Sbjct: 1046 TNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELV 1105

Query: 100  FDKMFRPDLFSWALMITCYTRKGE-LEKARELFDLLPNKED----------TAC------ 142
            F  M   DL SW  M+ CY + G+ L+  + L +LL   +            AC      
Sbjct: 1106 FQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECL 1165

Query: 143  ---------------------WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
                                  NA+V  Y K+G   EAKK+L  MP  + V+WN+++ G+
Sbjct: 1166 IESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGH 1225

Query: 182  TKNGEMHLASKFFEAMEERDV-VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV--- 237
             +N E + A K ++ + E+ +  ++  M+         D   K    I    V++     
Sbjct: 1226 AENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESD 1285

Query: 238  -----TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE 292
                 ++++ YA+ G +  +  +FD +  ++ + WNAM+AA    G  EEA ++F EM  
Sbjct: 1286 DYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEM-- 1343

Query: 293  RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
            RN           V +         LDQ  +    A TA ++   + +++   + +  K+
Sbjct: 1344 RN-----------VGVN--------LDQFSFSGGLAATANLAVLEEGQQL---HGLVIKL 1381

Query: 353  G-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIF 411
            G   D+   N  +  Y +CG M + + +  Q +N+  ++WN +I+ +A+      A + F
Sbjct: 1382 GFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETF 1441

Query: 412  EEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAAL 471
             EM                         LK+       G K DH T    LSAC H   +
Sbjct: 1442 HEM-------------------------LKL-------GPKPDHVTFVSLLSACNHGGLV 1469

Query: 472  QLGRQIH-HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD-PVDVISWNSLIA 529
              G   +  +  + G    +     +I +  + GR+ +AE   K+   P + ++W SL+A
Sbjct: 1470 DEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLA 1529

Query: 530  GYAINGNATEAIKLFEEMV 548
               I+GN   A K  E ++
Sbjct: 1530 ACRIHGNLELARKTAEHLL 1548



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 174/404 (43%), Gaps = 89/404 (22%)

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI------ 352
           T +I  YV++  +  AR + D MP +++ + TAM+SGY QN R ++A  +F  +      
Sbjct: 69  TKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVK 128

Query: 353 ------GTHDVVCW----------------------NVMIKG-----YAQCGRMDEAINL 379
                 G+    C                       N+ +K      +++CG+M++A  L
Sbjct: 129 ANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYL 188

Query: 380 FRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDA 439
           F  M+ +D+V+WN MI GYA                           + GF       D+
Sbjct: 189 FGTMMERDVVSWNAMIGGYA---------------------------VQGFAD-----DS 216

Query: 440 LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
             +F  M + G   D  TL   L A A    L +  QIH +  + GY +   V   LI  
Sbjct: 217 FCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINA 276

Query: 500 YAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING-NATEAIKLFEEMVMEGVAPDPVT 558
           YAK G +++A+ L K     D+ S  +LI GYA  G  + +A+ LF+EM    +  D V 
Sbjct: 277 YAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVI 336

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAI----EPL--VEHYACMIDLLSRAGRLDEAF 612
              +L+ C++       L  F   T+++A     +P   V     +ID+ +++G +++A 
Sbjct: 337 LCSMLNICAN-------LASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAK 389

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQ 656
                M+ K N   W +L+     H     G +AV    ++E +
Sbjct: 390 RAFDEMEEK-NVISWTSLISGYAKH---GYGHMAVSLYKKMESK 429



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 113/505 (22%), Positives = 213/505 (42%), Gaps = 106/505 (20%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM-------- 103
           +I  Y K G V  AR +F+ MP+R++VSW +M++GY  N + ++A  LF  M        
Sbjct: 71  LIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKAN 130

Query: 104 -------------------------------FRPDLFSWALMITCYTRKGELEKARELFD 132
                                          F  +LF  + ++  +++ G++E A  LF 
Sbjct: 131 QFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFG 190

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV----SWNSMLSGYTKNGEMH 188
            +  + D   WNAM+ GYA  G  +++  +  +M    +V    +  S+L    + G + 
Sbjct: 191 TMMER-DVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLI 249

Query: 189 LASKFFEAMEERDVVSWN----LMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYA 244
           +A++    + +    S++    L+++ Y +   L SA    + + ++++ S   +++GYA
Sbjct: 250 IANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYA 309

Query: 245 RNG-RMLEARRLFDQM---------------------------------------PIRNV 264
             G   ++A  LF +M                                       P  +V
Sbjct: 310 HEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALKYQPSYDV 369

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
              NA+I  Y + G+IE+A R F EM E+N +SWT++I GY +      A  L  +M  K
Sbjct: 370 AMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESK 429

Query: 325 ----NIAAQTAMISGYVQNKRMDEANQIFDK-IGTHDVVC----WNVMIKGYAQCGRMDE 375
               N     +++          E  + F+  +  +++      ++ M+  +A+ G ++E
Sbjct: 430 GFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEE 489

Query: 376 AINLFRQM-VNKDIVTWNTM-----IAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
           A NL  ++ +  +   W  +     I GY  + + + A  +F    +  N+V++  L S 
Sbjct: 490 AYNLLCKIDIKHNASLWGAILGASSIYGYMSLGK-EAASNLFNM--QPENSVNYVVLASI 546

Query: 430 FLQNEFHLDALKIFVLMTQEGKKAD 454
           +       DA KI  LM +   K +
Sbjct: 547 YSAAGLWDDAWKIRKLMEERSTKKN 571



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 186/405 (45%), Gaps = 33/405 (8%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
           +N    ++++  ++K G++ DA  LF  M +R++VSWN+MI GY       ++  +F  M
Sbjct: 164 ENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSM 223

Query: 104 FR----PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNY 156
            R    PD ++   ++      G L  A ++  ++              ++  YAK G+ 
Sbjct: 224 LRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSL 283

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL-ASKFFEAMEERDVVSWNLMLDGYVEL 215
             AK L   M  K++ S  ++++GY   G   + A   F+ M + ++   +++L   + +
Sbjct: 284 RSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNI 343

Query: 216 DDLDSAWKFFQKI--------PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
               +++    +I        P  +V     ++  YA++G + +A+R FD+M  +NV++W
Sbjct: 344 CANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISW 403

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
            ++I+ Y + G    A  L+ +M  +    N V++ +++          E     + M  
Sbjct: 404 TSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVN 463

Query: 324 K-NIAAQ----TAMISGYVQNKRMDEANQIFDKIGT-HDVVCWNVM-----IKGYAQCGR 372
           K NI  +    + M+  + +   ++EA  +  KI   H+   W  +     I GY   G+
Sbjct: 464 KYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGK 523

Query: 373 MDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
            + A NLF  M  ++ V +  + + Y+     DDA KI + M +R
Sbjct: 524 -EAASNLF-NMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEER 566



 Score = 95.9 bits (237), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 172/419 (41%), Gaps = 101/419 (24%)

Query: 11  KGSYV---FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARK 67
           KG +V   F ++  +    K G++E+A  +F  M +++ V++N+MI  YA  G  +D+  
Sbjct: 159 KGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFC 218

Query: 68  LFEQMPQRNLV--------------------------------SWNS-------MIAGYL 88
           +F  M +  LV                                 + S       +I  Y 
Sbjct: 219 MFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYA 278

Query: 89  HNDKVKEARELFDKMFRPDLFSWALMITCYTRKG-----ELEKAREL------------- 130
            N  ++ A++L   M + DLFS   +IT Y  +G      L+  +E+             
Sbjct: 279 KNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILC 338

Query: 131 --FDLLPN-------------------KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK 169
              ++  N                     D A  NA++  YAK G   +AK+  D M  K
Sbjct: 339 SMLNICANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEK 398

Query: 170 NIVSWNSMLSGYTKNGEMHLASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKF 224
           N++SW S++SGY K+G  H+A   ++ ME +     DV   +L+          +    F
Sbjct: 399 NVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECF 458

Query: 225 FQKIPEQNVVS----WVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAA-----Y 274
              + + N+      +  M+  +AR G + EA  L  ++ I+ N   W A++ A     Y
Sbjct: 459 NNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGY 518

Query: 275 VQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA---RRLLDQMPYKNIAAQT 330
           +  G+ E A+ LF   PE N V++  +   Y      D+A   R+L+++   K  A  +
Sbjct: 519 MSLGK-EAASNLFNMQPE-NSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKKNAGYS 575



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 96/196 (48%), Gaps = 5/196 (2%)

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
           +ALK   L++    + D S     L  C    A + G  IH   I +G+ +DL +   LI
Sbjct: 16  EALK---LLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLI 72

Query: 498 TMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
             Y K G +  A  +F       V+SW ++++GY+ NG   +A  LF +M   GV  +  
Sbjct: 73  IFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQF 132

Query: 558 TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKG 617
           T+   L AC+ +  +D G+++  C+ +   +E L    A ++D  S+ G++++A   + G
Sbjct: 133 TYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSA-LVDFHSKCGKMEDA-SYLFG 190

Query: 618 MKIKPNAGIWGTLLGA 633
             ++ +   W  ++G 
Sbjct: 191 TMMERDVVSWNAMIGG 206



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 142/334 (42%), Gaps = 47/334 (14%)

Query: 16   FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
            + +N  IT   K G +  +  IF  +  K+ +T+N+M++A A +G   +A K+F +M  R
Sbjct: 1287 YVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEM--R 1344

Query: 76   NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDL-- 133
            N+                             D FS++  +        LE+ ++L  L  
Sbjct: 1345 NV-------------------------GVNLDQFSFSGGLAATANLAVLEEGQQLHGLVI 1379

Query: 134  -LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
             L  + D    NA +  Y K G  ++  K+L    +++ +SWN ++S + ++G    A +
Sbjct: 1380 KLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARE 1439

Query: 193  FFEAM----EERDVVSWNLMLD-----GYVE--LDDLDSAWKFFQKIPEQNVVSWVTMLS 241
             F  M     + D V++  +L      G V+  L   DS  + F   P   +   V ++ 
Sbjct: 1440 TFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFP--GIEHCVCIID 1497

Query: 242  GYARNGRMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQIEEA---ARLFIEMPERNPVS 297
               R+GR+  A     +MP+  N +AW +++AA    G +E A   A   +E+   +  +
Sbjct: 1498 LLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSA 1557

Query: 298  WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
            +    +      K ++   L  +M   NI  Q A
Sbjct: 1558 YVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPA 1591


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  334 bits (857), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 214/746 (28%), Positives = 358/746 (47%), Gaps = 122/746 (16%)

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKAR 128
           P +N+  WNS+I  +  N    EA E + K+      PD +++  +I         +   
Sbjct: 67  PAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVI---------KACA 117

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
            LFD                  A++G+    +++LD     ++   N+++  Y++ G + 
Sbjct: 118 GLFD------------------AEMGDL-VYEQILDMGFESDLFVGNALVDMYSRMGLLT 158

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK------IPEQNVVSWV----- 237
            A + F+ M  RD+VSWN ++ GY      + A + + +      +P+   VS V     
Sbjct: 159 RARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFG 218

Query: 238 ----------------------------TMLSGYARNGRMLEARRLFDQMPIRNVVAWNA 269
                                        +++ Y +  R  +ARR+FD+M +R+ V++N 
Sbjct: 219 NLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNT 278

Query: 270 MIAAYVQRGQIEEAARLFIE-----MPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
           MI  Y++   +EE+ R+F+E      P+   VS      G++R   L  A+ + + M   
Sbjct: 279 MICGYLKLEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLR--DLSLAKYIYNYMLKA 336

Query: 325 NIAAQTA----MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF 380
               ++     +I  Y +   M  A  +F+ +   D V WN +I GY Q G + EA+ LF
Sbjct: 337 GFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLF 396

Query: 381 RQMV----NKDIVTW-----------------------------------NTMIAGYAQI 401
           + M+      D +T+                                   N +I  YA+ 
Sbjct: 397 KMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKC 456

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
            ++ D++KIF  MG   +TV+WN +IS  ++       L++   M +     D +T    
Sbjct: 457 GEVGDSLKIFSSMGTG-DTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVT 515

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           L  CA LAA +LG++IH   ++ GY ++L +GN+LI MY+KCG ++N+  +F+     DV
Sbjct: 516 LPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDV 575

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC 581
           ++W  +I  Y + G   +A++ F +M   G+ PD V FI ++ ACSH GLVD GL  FE 
Sbjct: 576 VTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEK 635

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIK 641
           M   Y I+P++EHYAC++DLLSR+ ++ +A E ++ M IKP+A IW ++L ACR   +++
Sbjct: 636 MKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDME 695

Query: 642 LGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVK 701
                  ++ EL P       L SN +A   +WD+V  +R S++     K PG SWIEV 
Sbjct: 696 TAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVG 755

Query: 702 NQIHTFLSGDPKQCRTAEICNTLKTL 727
             +H F SGD    ++  I  +L+ L
Sbjct: 756 KNVHVFSSGDDSAPQSEAIYKSLEIL 781



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 105/466 (22%), Positives = 207/466 (44%), Gaps = 63/466 (13%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F  N  +    + G +  A ++F +M  ++ V++NS+IS Y+ +G   +A +++ ++
Sbjct: 139 SDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHEL 198

Query: 73  ------PQRNLVS---------------------------------WNSMIAGYLHNDKV 93
                 P    VS                                  N ++A YL   + 
Sbjct: 199 KNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRP 258

Query: 94  KEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF--DLLPNKEDTACWNAMVAGYA 151
            +AR +FD+M   D  S+  MI  Y +   +E++  +F  +L   K D    ++++    
Sbjct: 259 TDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQFKPDLLTVSSVLRACG 318

Query: 152 KIGNYNEAKKLLDAMPSKNIV----SWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL 207
            + + + AK + + M     V      N ++  Y K G+M  A   F +ME +D VSWN 
Sbjct: 319 HLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNS 378

Query: 208 MLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSGYAR-----NGRMLEARRLFDQ 258
           ++ GY++  DL  A K F+ +     + + ++++ ++S   R      G+ L +  +   
Sbjct: 379 IISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSG 438

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
           + I   V+ NA+I  Y + G++ ++ ++F  M   + V+W T+I   VR        ++ 
Sbjct: 439 ICIDLSVS-NALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVT 497

Query: 319 DQMPYKNIAAQTA-------MISGYVQNKRMDEANQIFDKIGTH-DVVCWNVMIKGYAQC 370
            QM    +    A       M +     +   E +    + G   ++   N +I+ Y++C
Sbjct: 498 TQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKC 557

Query: 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
           G ++ +  +F +M  +D+VTW  MI  Y    + + A++ F +M K
Sbjct: 558 GCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEK 603


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  334 bits (857), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 206/675 (30%), Positives = 344/675 (50%), Gaps = 57/675 (8%)

Query: 115 ITCYTRKGELEKARELFDLLPNKEDTACWNA-MVAGYAKIGNYNEAKKLLDAMPSKNIVS 173
           I  Y  K  L K      ++  K  +   +A ++  YA +G+   A+   D + +K++ +
Sbjct: 49  IFLYCTKVHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYT 108

Query: 174 WNSMLSGYTKNGEMHLASKFFE-----AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI 228
           WNSM+S Y + G  H A   F      +  + D  ++  ++     LDD         K+
Sbjct: 109 WNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDDGRKVHCLVLKL 168

Query: 229 P-EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF 287
             E +V    + +  Y+R G +  A  LFD M IR++  WNAMI+ +   G++ EA  +F
Sbjct: 169 GFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVF 228

Query: 288 IEMPERNPVSWTTMIDGYVRIA-KLDE--ARRLLDQMPYK-----NIAAQTAMISGYVQN 339
            EM  ++    +  I   + I  +LD+  +  L+     K     ++    A+I+ Y + 
Sbjct: 229 DEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKF 288

Query: 340 KRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN-------------- 385
             +  A  IF+++   D+V WN ++  + Q  +   A+ ++ +M +              
Sbjct: 289 GELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLA 348

Query: 386 --------------------------KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRN 419
                                      DI   N +I  YA++  +D A K+FE +   ++
Sbjct: 349 SVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGL-PVKD 407

Query: 420 TVSWNALISGFLQNEFHLDALKIFVLMTQ-EGKKADHSTLACALSACAHLAALQLGRQIH 478
            +SWN+LI+G+ QN    +A+ ++  M    G   +  T    L+A + L AL+ G + H
Sbjct: 408 VISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAH 467

Query: 479 HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNAT 538
              IK+    D+FV   L+ MY KCG++ +A  LF +      +SWN++I+ + ++G   
Sbjct: 468 GQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGL 527

Query: 539 EAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACM 598
           +A+KLF+EM  EGV PD +TF+ +LSACSH GLVD G   F+ M E Y I P ++HY CM
Sbjct: 528 KAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCM 587

Query: 599 IDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKT 658
           +DL  RAG L++AF  VK M ++P+  +WG LLGACR+H+N++L R   + L ++E +  
Sbjct: 588 VDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSDHLLKVESENV 647

Query: 659 SCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTA 718
             Y LLSN++A+ G W+ V++VR      G +K PG S IEV  +I  F +G+    +  
Sbjct: 648 GYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKIDVFYTGNQTHPKCE 707

Query: 719 EICNTLKTLAAQIRN 733
           EI + L+ L A++++
Sbjct: 708 EIYSELRNLTAKMKS 722



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 143/599 (23%), Positives = 250/599 (41%), Gaps = 100/599 (16%)

Query: 4   SLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVN 63
           +L  +  K   +F   K I +    G +  A   F Q+  K+  T+NSMISAYA+ G  +
Sbjct: 64  ALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIGHFH 123

Query: 64  DARKLFEQ-----MPQRNLVSWNSMIAGYLHNDKVKEARELFDKM-FRPDLFSWALMITC 117
            A   F +       Q +  ++  +I    + D  ++   L  K+ F  D++  A  I  
Sbjct: 124 AAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDDGRKVHCLVLKLGFECDVYIAASFIHF 183

Query: 118 YTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI------ 171
           Y+R G +  A  LFD +  + D   WNAM++G+   G   EA ++ D M  K++      
Sbjct: 184 YSRFGFVSLACNLFDNMMIR-DIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVT 242

Query: 172 --------VSWNSMLSG-------------------------YTKNGEMHLASKFFEAME 198
                   V  + ++SG                         Y K GE+  A   F  M+
Sbjct: 243 ISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMK 302

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV----SWVTMLSGYARNGRMLEARR 254
            RD+VSWN +L  + +      A   + K+    VV    + V++ S  A  G  L +R 
Sbjct: 303 VRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRS 362

Query: 255 LFDQMPIR-----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIA 309
           +   +  R     ++   NA+I  Y + G I+ A ++F  +P ++ +SW ++I GY +  
Sbjct: 363 IHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNG 422

Query: 310 KLDEARRLLDQMPY-----KNIAAQTAMISGYVQ----NKRMDEANQIFDKIGTHDVVCW 360
             +EA  +   M Y      N     ++++ + Q     + M    Q+       D+   
Sbjct: 423 LANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVS 482

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
             ++  Y +CG++ +A++LF ++ ++  V+WN +I+ +        AVK+F+E       
Sbjct: 483 TCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKE------- 535

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
                                    M  EG K DH T    LSAC+H   +  G+    L
Sbjct: 536 -------------------------MQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQL 570

Query: 481 AIKS-GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGN 536
             ++ G    L     ++ ++ + G ++ A    K+  PV  DV  W +L+    I+ N
Sbjct: 571 MQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNM-PVRPDVSVWGALLGACRIHEN 628


>gi|302788580|ref|XP_002976059.1| hypothetical protein SELMODRAFT_104710 [Selaginella moellendorffii]
 gi|300156335|gb|EFJ22964.1| hypothetical protein SELMODRAFT_104710 [Selaginella moellendorffii]
          Length = 699

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 206/661 (31%), Positives = 340/661 (51%), Gaps = 53/661 (8%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----F 104
           N++++ Y K G +  AR++F+ M  R+++SWN++I  Y      KEA ELF  M      
Sbjct: 49  NALVNMYGKCGSLALAREVFDGMDHRDVISWNAVITAYAQAGHCKEAMELFQAMQEDGRI 108

Query: 105 RPDLFSWALMITCYTRKGELEKARELFDLLPNK----EDTACWNAMVAGYAKIGNYNEAK 160
            PD  ++  +++       LE A  +F L+  +     D    NA+V  Y+K G+   A 
Sbjct: 109 EPDSVTFVAVVSACCDPSALEAANRIFALVEERGLLDSDVVLGNALVNMYSKCGSLKSAT 168

Query: 161 KLLDAMPSKN-IVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLD 219
            + + M  ++ +V W +M+S Y ++G    A + F+ ME+ +     L+ DG+     L 
Sbjct: 169 MVFERMKIRDDVVLWTTMISVYAQDGYSEAALELFQQMEKEEA----LLPDGFTLASALA 224

Query: 220 SAWK-------------FFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA 266
           +                  ++  E  +V    ++S YA  G + +A   F +M  RNVV+
Sbjct: 225 ACTGPEMLEEGREIHALVIERGCESELVVGNALVSMYANCGTLQDALECFQKMAQRNVVS 284

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMI----------DGYVRIAKLD 312
           WNAMIAAYV     +EA R+F +M     + N V++ T +          DG +R  +++
Sbjct: 285 WNAMIAAYVHHNCDKEAFRIFYQMQLEGVQPNSVTFVTFLSTCSTPAAFEDGLIRALEVE 344

Query: 313 EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH--DVVCWNVMIKGYAQC 370
           +    LD +         A++  Y +  ++DE  ++F ++     DVV WN +I+G  + 
Sbjct: 345 KRVESLDAL------VGNALLHTYAKLGKLDEVQRVFQRMEKQRDDVVTWNAVIEGSVRN 398

Query: 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
           G    A+ L  Q   K++ +WN ++  Y  + ++ D  K+FEEM + R+ ++WN ++  +
Sbjct: 399 GEFRNALELMPQ---KNLGSWNGLLGAYIHVGRLADTRKLFEEM-EERDVITWNMILGAY 454

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490
           ++ +   +A+++F  M  EG + +  T    L ACA  A+L  GR++H L  + G  ++L
Sbjct: 455 VERDMAKEAVRLFRRMIAEGTEPNSITWTTMLGACAGEASLAEGRRVHELIAERGADSEL 514

Query: 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME 550
           FVGN+L+ M+ KC  +  A   F+     D  SWN L+A  A NG+A EA+K F  M  E
Sbjct: 515 FVGNALVDMFGKCASLGGARQAFERIRAKDASSWNVLVAALAQNGDAEEALKQFLRMQRE 574

Query: 551 GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDE 610
           G+ P  VTFI V  ACSH G ++    +F  +   Y I PL  HY+ M DLL RAG LDE
Sbjct: 575 GIKPTDVTFIVVFWACSHAGRLEQAKTIFASLRHDYGIAPLPSHYSGMTDLLGRAGFLDE 634

Query: 611 AFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAE 670
           A E++K +    +   W TLL AC++H +++ GR    ++    P  ++    LSN+ A 
Sbjct: 635 AEEVIKRIPFSRDELPWMTLLSACKVHGDVERGRKVAGQVLRWNPGDSAAGVALSNIFAG 694

Query: 671 A 671
           A
Sbjct: 695 A 695



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 181/371 (48%), Gaps = 49/371 (13%)

Query: 296 VSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK 351
           VS+ T +   VRI  L   + +    ++      I+   A+++ Y +   +  A ++FD 
Sbjct: 11  VSFITALKSCVRIQSLAAGKFIHLLVIESGLLTQISVGNALVNMYGKCGSLALAREVFDG 70

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLF------------------------------- 380
           +   DV+ WN +I  YAQ G   EA+ LF                               
Sbjct: 71  MDHRDVISWNAVITAYAQAGHCKEAMELFQAMQEDGRIEPDSVTFVAVVSACCDPSALEA 130

Query: 381 ----------RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
                     R +++ D+V  N ++  Y++   +  A  +FE M  R + V W  +IS +
Sbjct: 131 ANRIFALVEERGLLDSDVVLGNALVNMYSKCGSLKSATMVFERMKIRDDVVLWTTMISVY 190

Query: 431 LQNEFHLDALKIFVLM-TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND 489
            Q+ +   AL++F  M  +E    D  TLA AL+AC     L+ GR+IH L I+ G  ++
Sbjct: 191 AQDGYSEAALELFQQMEKEEALLPDGFTLASALAACTGPEMLEEGREIHALVIERGCESE 250

Query: 490 LFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549
           L VGN+L++MYA CG +Q+A   F+     +V+SWN++IA Y  +    EA ++F +M +
Sbjct: 251 LVVGNALVSMYANCGTLQDALECFQKMAQRNVVSWNAMIAAYVHHNCDKEAFRIFYQMQL 310

Query: 550 EGVAPDPVTFIGVLSACSH-VGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
           EGV P+ VTF+  LS CS      DG ++  E    V +++ LV +   ++   ++ G+L
Sbjct: 311 EGVQPNSVTFVTFLSTCSTPAAFEDGLIRALEVEKRVESLDALVGN--ALLHTYAKLGKL 368

Query: 609 DEAFEMVKGMK 619
           DE   + + M+
Sbjct: 369 DEVQRVFQRME 379



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/425 (25%), Positives = 208/425 (48%), Gaps = 43/425 (10%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           +  +  +   V  N+++S YA  G + DA + F++M QRN+VSWN+MIA Y+H++  KEA
Sbjct: 242 VIERGCESELVVGNALVSMYANCGTLQDALECFQKMAQRNVVSWNAMIAAYVHHNCDKEA 301

Query: 97  RELFDKM----FRPDLFSWALMI-TCYT---------RKGELEKARELFDLLPNKEDTAC 142
             +F +M     +P+  ++   + TC T         R  E+EK  E  D L        
Sbjct: 302 FRIFYQMQLEGVQPNSVTFVTFLSTCSTPAAFEDGLIRALEVEKRVESLDALVG------ 355

Query: 143 WNAMVAGYAKIGNYNEAKKLLDAMPSK--NIVSWNSMLSGYTKNGEMHLASKFFEAMEER 200
            NA++  YAK+G  +E +++   M  +  ++V+WN+++ G  +NGE   A    E M ++
Sbjct: 356 -NALLHTYAKLGKLDEVQRVFQRMEKQRDDVVTWNAVIEGSVRNGEFRNA---LELMPQK 411

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
           ++ SWN +L  Y+ +  L    K F+++ E++V++W  +L  Y       EA RLF +M 
Sbjct: 412 NLGSWNGLLGAYIHVGRLADTRKLFEEMEERDVITWNMILGAYVERDMAKEAVRLFRRMI 471

Query: 261 IR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS----WTTMIDGYVRIAKLD 312
                 N + W  M+ A      + E  R+   + ER   S       ++D + + A L 
Sbjct: 472 AEGTEPNSITWTTMLGACAGEASLAEGRRVHELIAERGADSELFVGNALVDMFGKCASLG 531

Query: 313 EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV----VCWNVMIKGYA 368
            AR+  +++  K+ ++   +++   QN   +EA + F ++    +    V + V+    +
Sbjct: 532 GARQAFERIRAKDASSWNVLVAALAQNGDAEEALKQFLRMQREGIKPTDVTFIVVFWACS 591

Query: 369 QCGRMDEAINLFRQMVNK-DIVTWNTMIAGYAQIRQ----MDDAVKIFEEMGKRRNTVSW 423
             GR+++A  +F  + +   I    +  +G   +      +D+A ++ + +   R+ + W
Sbjct: 592 HAGRLEQAKTIFASLRHDYGIAPLPSHYSGMTDLLGRAGFLDEAEEVIKRIPFSRDELPW 651

Query: 424 NALIS 428
             L+S
Sbjct: 652 MTLLS 656



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 105/187 (56%), Gaps = 1/187 (0%)

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
           M   G   D+ +   AL +C  + +L  G+ IH L I+SG +  + VGN+L+ MY KCG 
Sbjct: 1   MLLHGLLPDNVSFITALKSCVRIQSLAAGKFIHLLVIESGLLTQISVGNALVNMYGKCGS 60

Query: 506 IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG-VAPDPVTFIGVLS 564
           +  A  +F   D  DVISWN++I  YA  G+  EA++LF+ M  +G + PD VTF+ V+S
Sbjct: 61  LALAREVFDGMDHRDVISWNAVITAYAQAGHCKEAMELFQAMQEDGRIEPDSVTFVAVVS 120

Query: 565 ACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNA 624
           AC     ++   ++F  + E   ++  V     ++++ S+ G L  A  + + MKI+ + 
Sbjct: 121 ACCDPSALEAANRIFALVEERGLLDSDVVLGNALVNMYSKCGSLKSATMVFERMKIRDDV 180

Query: 625 GIWGTLL 631
            +W T++
Sbjct: 181 VLWTTMI 187



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 139/288 (48%), Gaps = 24/288 (8%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           ++G    A+++   M QKN  ++N ++ AY   GR+ D RKLFE+M +R++++WN ++  
Sbjct: 397 RNGEFRNALEL---MPQKNLGSWNGLLGAYIHVGRLADTRKLFEEMEERDVITWNMILGA 453

Query: 87  YLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDLLPNK---ED 139
           Y+  D  KEA  LF +M      P+  +W  M+     +  L + R + +L+  +    +
Sbjct: 454 YVERDMAKEAVRLFRRMIAEGTEPNSITWTTMLGACAGEASLAEGRRVHELIAERGADSE 513

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE 199
               NA+V  + K  +   A++  + + +K+  SWN +++   +NG+   A K F  M+ 
Sbjct: 514 LFVGNALVDMFGKCASLGGARQAFERIRAKDASSWNVLVAALAQNGDAEEALKQFLRMQR 573

Query: 200 RDV----VSWNLMLDGYVELDDLDSAWKFFQKI-------PEQNVVSWVTMLSGYARNGR 248
             +    V++ ++         L+ A   F  +       P  +  S +T L G  R G 
Sbjct: 574 EGIKPTDVTFIVVFWACSHAGRLEQAKTIFASLRHDYGIAPLPSHYSGMTDLLG--RAGF 631

Query: 249 MLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
           + EA  +  ++P  R+ + W  +++A    G +E   ++  ++   NP
Sbjct: 632 LDEAEEVIKRIPFSRDELPWMTLLSACKVHGDVERGRKVAGQVLRWNP 679



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 71/172 (41%), Gaps = 14/172 (8%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F  N  +   GK   +  A + F ++  K+  ++N +++A A+NG   +A K F +M
Sbjct: 512 SELFVGNALVDMFGKCASLGGARQAFERIRAKDASSWNVLVAALAQNGDAEEALKQFLRM 571

Query: 73  PQRNL---------VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGE 123
            +  +         V W    AG L   K   A    D    P    ++ M     R G 
Sbjct: 572 QREGIKPTDVTFIVVFWACSHAGRLEQAKTIFASLRHDYGIAPLPSHYSGMTDLLGRAGF 631

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN 175
           L++A E+   +P   D   W  +++     G+    +K+     +  ++ WN
Sbjct: 632 LDEAEEVIKRIPFSRDELPWMTLLSACKVHGDVERGRKV-----AGQVLRWN 678


>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
 gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
           Group]
 gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
 gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
          Length = 651

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 183/482 (37%), Positives = 273/482 (56%), Gaps = 11/482 (2%)

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL---- 318
           +V   NA       RG +E+A RLF   P R+ VSW T+I GYVR     EA  L     
Sbjct: 159 DVFVVNAATHFLSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMV 218

Query: 319 --DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC----WNVMIKGYAQCGR 372
             D +   +     A +SG  Q + ++   ++   + +  V C     N ++  Y +CG 
Sbjct: 219 AEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGS 278

Query: 373 MDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
           ++ A ++F ++ ++ +V+W TMI G+A+   MDDA K+F+EM   R+   WNAL++G++Q
Sbjct: 279 LEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEM-PERDVFPWNALMTGYVQ 337

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
            +   +AL +F  M +     D  T+   L+AC+ L AL++G  +H    K   V  + +
Sbjct: 338 CKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRLVFSVAL 397

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
           G SLI MYAKCG I+ A  +FK+    + ++W ++I G A +G+A EAI+ F  M+  G 
Sbjct: 398 GTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQ 457

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
            PD +TFIGVLSAC H GLV  G + F  M   Y +E  ++HY+CMIDLL RAG LDEA 
Sbjct: 458 KPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEAE 517

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672
           ++V  M ++P+A +WG +  ACRM  NI LG  A  KL E++P  +  Y LL+NM+AEA 
Sbjct: 518 QLVNTMPMEPDAVVWGAIFFACRMQGNISLGEKAAMKLVEIDPSDSGIYVLLANMYAEAN 577

Query: 673 RWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
              + +KVR  M   G +K PGCS IE+   +H F+  D     +  I + L  +  QI+
Sbjct: 578 MRKKADKVRAMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHMDSHAIYDCLHEITLQIK 637

Query: 733 NT 734
           +T
Sbjct: 638 HT 639



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/384 (27%), Positives = 179/384 (46%), Gaps = 39/384 (10%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF---- 100
           +    N+     +  G + DAR+LF++ P R+LVSWN++I GY+      EA ELF    
Sbjct: 159 DVFVVNAATHFLSIRGPMEDARRLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMV 218

Query: 101 --DKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTAC----WNAMVAGYAKIG 154
             D + RPD  +    ++   +  +LE  R L   + + +  +C     NA++  Y K G
Sbjct: 219 AEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLHGFV-DSDGVSCTVRLMNALMDMYIKCG 277

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE 214
           +   AK + + +  + +VSW +M+ G+ K G M  A K F+ M ERDV  WN ++ GYV+
Sbjct: 278 SLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQ 337

Query: 215 LDDLDSAWKFFQKIPEQNVV----SWVTMLSGYARNG---------RMLEARRLFDQMPI 261
                 A   F ++ E +VV    + V +L+  ++ G         R +E  RL     +
Sbjct: 338 CKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRL-----V 392

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA----RRL 317
            +V    ++I  Y + G IE+A  +F E+PE+N ++WT MI G       +EA    R +
Sbjct: 393 FSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAIEHFRTM 452

Query: 318 LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT-----HDVVCWNVMIKGYAQCGR 372
           ++     +      ++S       + E  + F  + T       +  ++ MI    + G 
Sbjct: 453 IELGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGH 512

Query: 373 MDEAINLFRQM-VNKDIVTWNTMI 395
           +DEA  L   M +  D V W  + 
Sbjct: 513 LDEAEQLVNTMPMEPDAVVWGAIF 536



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 170/353 (48%), Gaps = 29/353 (8%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K G +E A  +F ++  +  V++ +MI  +AK G ++DARK+F++MP+R++  WN+++ G
Sbjct: 275 KCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTG 334

Query: 87  YLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKE---D 139
           Y+   + KEA  LF +M      PD  +   ++T  ++ G LE    +   +        
Sbjct: 335 YVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRLVFS 394

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM-- 197
            A   +++  YAK GN  +A  +   +P KN ++W +M+ G   +G  + A + F  M  
Sbjct: 395 VALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAIEHFRTMIE 454

Query: 198 --EERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-----EQNVVSWVTMLSGYARNGRML 250
             ++ D +++  +L        +    +FF  +      E+ +  +  M+    R G + 
Sbjct: 455 LGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLD 514

Query: 251 EARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTTMIDGYV 306
           EA +L + MP+  + V W A+  A   +G I   E+AA   +E+   +   +  + + Y 
Sbjct: 515 EAEQLVNTMPMEPDAVVWGAIFFACRMQGNISLGEKAAMKLVEIDPSDSGIYVLLANMYA 574

Query: 307 RI---AKLDEARRLLDQMPYKNIAAQTAM-ISGY-----VQNKRMDEANQIFD 350
                 K D+ R ++  +  + +   + + ++G      V++K   +++ I+D
Sbjct: 575 EANMRKKADKVRAMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHMDSHAIYD 627



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 70/137 (51%), Gaps = 4/137 (2%)

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG 504
           L+     + DH T    L ACA L     G       ++ G  +D+FV N+     +  G
Sbjct: 115 LLRSGTARPDHLTFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHFLSIRG 174

Query: 505 RIQNAELLFKDADPV-DVISWNSLIAGYAINGNATEAIKLFEEMVMEG--VAPDPVTFIG 561
            +++A  LF D  PV D++SWN+LI GY   GN  EA++LF  MV E   V PD VT I 
Sbjct: 175 PMEDARRLF-DRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIA 233

Query: 562 VLSACSHVGLVDGGLKL 578
            +S C  +  ++ G +L
Sbjct: 234 AVSGCGQMRDLELGRRL 250



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 13/162 (8%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDA----RKLFEQMPQRNL 77
           I    K G +E+AI IF ++ +KN +T+ +MI   A +G  N+A    R + E   + + 
Sbjct: 402 IDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDE 461

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFD 132
           +++  +++   H   VKE RE F  M         +  ++ MI    R G L++A +L +
Sbjct: 462 ITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVN 521

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYN----EAKKLLDAMPSKN 170
            +P + D   W A+       GN +     A KL++  PS +
Sbjct: 522 TMPMEPDAVVWGAIFFACRMQGNISLGEKAAMKLVEIDPSDS 563


>gi|147833266|emb|CAN77478.1| hypothetical protein VITISV_013730 [Vitis vinifera]
          Length = 1009

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 233/835 (27%), Positives = 396/835 (47%), Gaps = 125/835 (14%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTY-----NSMISAYAKNG-RVNDARKLFEQM 72
           +  I+ L +   + E  +I +++ + N + +     N ++  Y KN   + DARKL +++
Sbjct: 84  SDSISLLNRCSTLSEFRQIHARVVKLNALKWKSSIGNKLVVLYCKNQWSLEDARKLLDEI 143

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELF----------DKMFRP---------------- 106
           P R + ++ ++I  Y  +++  E    F          DK   P                
Sbjct: 144 PNRTVPAYAALIRSYCRSEQWDELFSXFRLMVYEGMLPDKYLVPTILKACSAMLLXRIGK 203

Query: 107 -------------DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKI 153
                        D+F    +I  Y+  G+L  +R +F  +  + D   W A+++ Y + 
Sbjct: 204 MVHGFVIRKSVESDVFVGNALIHFYSNCGDLGSSRSVFHSM-QERDVVSWTALISAYMEE 262

Query: 154 GNYNEAKKLLDAMP----SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSW 205
           G  +EAK +   M       +++SW+++LSG+ +NGE+ LA +  E M ER     V SW
Sbjct: 263 GLXDEAKHIFHLMQLDGVKPDLISWSALLSGFARNGEIDLALETLEEMPERGLQPTVNSW 322

Query: 206 NLMLDGYVELDDLDSAWKFFQKI---PEQ-NVVSWVTMLSG------------------- 242
           N ++ G V+   L+ A   F ++   PE  N+++  ++L                     
Sbjct: 323 NGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKALRLGKAIHXIAXK 382

Query: 243 ----------------YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
                           Y++ G    A ++F +   +N   WN MIAAYV  G++E+A  L
Sbjct: 383 HGIVGNVYVEGSVIDMYSKCGSYDYAEKVFXKAENKNTAMWNEMIAAYVNEGKVEDALGL 442

Query: 287 FIEMPE----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPY----KNIAAQTAMISGYVQ 338
              M +     + +++ T++ G+ R     +A  LL +M       N+ +   +ISG+ Q
Sbjct: 443 LRSMQKDGWKPDVITYNTILSGHARNGLKTQAXELLSEMVQMGLKPNVVSFNVLISGFQQ 502

Query: 339 NKRMDEANQIF-------DKIGTHDVVCWNVMIKGYAQCGRMDEAINL------------ 379
           +    EA ++F       D    ++V+  ++        G +    +L            
Sbjct: 503 SGLSYEALKVFRIMQSPSDGCNPNEVLNLSMRPNPITITGALPACADLNLWCQGKEIHGY 562

Query: 380 -FRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
             R     +I   + ++  YA+   MD A K+F  +  R NTVSWNAL++G++ N+   +
Sbjct: 563 TLRNGFEPNIFVSSALVDMYAKCHDMDSANKVFFRIDGR-NTVSWNALMAGYINNKQPEE 621

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL--FVGNSL 496
           ALK+F+ M  EG +    T      AC  +AA++ GR +H  A K   +++L   + ++L
Sbjct: 622 ALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFGRGLHGYAAKC-QLDELKNAIXSAL 680

Query: 497 ITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
           I MYAKCG I +A+ +F      DV  WN++I+ ++++G A  A  +F +M + G+ PD 
Sbjct: 681 IDMYAKCGSILDAKSVFDSEVEKDVPLWNAMISAFSVHGMARNAFAVFXQMELLGIXPDH 740

Query: 557 VTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVK 616
           +TF+ +LSAC+  GLV+ G K F  M   Y +   +EHY CM+ +L  AG LDEA + ++
Sbjct: 741 ITFVSLLSACARDGLVEEGWKYFNSMEISYGVAATLEHYTCMVGILGGAGLLDEALDFIR 800

Query: 617 GMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDE 676
            M   P+A +W TLL ACR+H N ++G  A + L ELEP   + Y LLSN++  +G WD 
Sbjct: 801 QMPYPPDACMWATLLQACRVHSNPEIGERAAKALFELEPDNATNYMLLSNIYVSSGMWDF 860

Query: 677 VEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
            + +R  M G        CS++ V +   TF  G+       EI  T   LA ++
Sbjct: 861 AKNLRSFMRGRKLLTIKECSYLTVGSHXCTFKGGESSHPELEEILETWDXLARKM 915



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 101/413 (24%), Positives = 184/413 (44%), Gaps = 48/413 (11%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP- 73
           V+ +   I    K G  + A K+F +   KNT  +N MI+AY   G+V DA  L   M  
Sbjct: 389 VYVEGSVIDMYSKCGSYDYAEKVFXKAENKNTAMWNEMIAAYVNEGKVEDALGLLRSMQK 448

Query: 74  ---QRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEK 126
              + +++++N++++G+  N    +A EL  +M     +P++ S+ ++I+ + + G   +
Sbjct: 449 DGWKPDVITYNTILSGHARNGLKTQAXELLSEMVQMGLKPNVVSFNVLISGFQQSGLSYE 508

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYT-KNG 185
           A ++F ++ +  D  C    V   +   N       L A    N+      + GYT +NG
Sbjct: 509 ALKVFRIMQSPSD-GCNPNEVLNLSMRPNPITITGALPACADLNLWCQGKEIHGYTLRNG 567

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR 245
                        E ++   + ++D Y +  D+DSA K F +I  +N VSW  +++GY  
Sbjct: 568 ------------FEPNIFVSSALVDMYAKCHDMDSANKVFFRIDGRNTVSWNALMAGYIN 615

Query: 246 NGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGY 305
           N +  EA +LF +           M+   +Q   I     LF    +   + +   + GY
Sbjct: 616 NKQPEEALKLFLE-----------MLGEGLQPSSITFMI-LFPACGDIAAIRFGRGLHGY 663

Query: 306 VRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIK 365
               +LDE +           A  +A+I  Y +   + +A  +FD     DV  WN MI 
Sbjct: 664 AAKCQLDELKN----------AIXSALIDMYAKCGSILDAKSVFDSEVEKDVPLWNAMIS 713

Query: 366 GYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            ++  G    A  +F QM    +  D +T+ ++++  A+   +++  K F  M
Sbjct: 714 AFSVHGMARNAFAVFXQMELLGIXPDHITFVSLLSACARDGLVEEGWKYFNSM 766


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 194/554 (35%), Positives = 299/554 (53%), Gaps = 83/554 (14%)

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
           +V    +++ AY++ G+I EA ++F EM ER+  +W  M+ G  R A+  EA  L  +M 
Sbjct: 102 SVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMV 161

Query: 323 YKNIAAQTAMISG------------------------------YVQNKRMD--------- 343
            + +A  T  +S                               +V N  +D         
Sbjct: 162 GEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLE 221

Query: 344 EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVT--------- 390
           EA  +F  +   D+V WN +I G  Q G+   A+ +F+ M    V+ D++T         
Sbjct: 222 EAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIA 281

Query: 391 -------------------WNT--MIAG------YAQIRQMDDAVKIFEEMGKRRNTVSW 423
                              W+   +IAG      YA++  ++ A ++F+ M   +++VSW
Sbjct: 282 QGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSM-PVQDSVSW 340

Query: 424 NALISGFLQNEFHLDALKIFVLMTQ-EGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482
           N LI+G++QN    +A++ +  M + EG KA   T    L A +HL ALQ G ++H L+I
Sbjct: 341 NTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSI 400

Query: 483 KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIK 542
           K G   D++VG  LI +YAKCG++  A LLF+         WN++I+G  ++G+  EA+ 
Sbjct: 401 KIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALT 460

Query: 543 LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLL 602
           LF  M  EG+ PD VTF+ +L+ACSH GLVD G   F+ M   Y I P+ +HYACM D+L
Sbjct: 461 LFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADML 520

Query: 603 SRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYA 662
            RAG+LDEAF  ++ M IKP++ +WG LLGACR+H N+++G++A + L EL+P+    Y 
Sbjct: 521 GRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYV 580

Query: 663 LLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTA--EI 720
           L+SNM+A+ G+WD V++VR  +     QK PG S IEVK  ++ F SG+  +      EI
Sbjct: 581 LMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQTEPHPQHEEI 640

Query: 721 CNTLKTLAAQIRNT 734
              L++L A+IR+ 
Sbjct: 641 QAELRSLLAKIRSV 654



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 121/498 (24%), Positives = 219/498 (43%), Gaps = 103/498 (20%)

Query: 41  MSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF 100
           + + +  T  S++ AY + GR+++A K+F++M +R++ +WN+M++G   N +  EA  LF
Sbjct: 98  LVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLF 157

Query: 101 DKMFRPDLFS-------------------WALMITCYTRKGELEKARELFDLLPNKEDTA 141
            +M    +                      AL++  Y  K  L+K  ELF          
Sbjct: 158 GRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDK--ELF---------V 206

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM---- 197
           C NA++  Y K+G   EA+ +   M  +++V+WNS++SG  + G+   A K F+ M    
Sbjct: 207 C-NALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSG 265

Query: 198 ------------------------------------EERDVVSWNLMLDGYVELDDLDSA 221
                                               +  D+++ N ++D Y +L ++++A
Sbjct: 266 VSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAA 325

Query: 222 WKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV-----AWNAMIAAYVQ 276
            + F  +P Q+ VSW T+++GY +NG   EA   +  M     +      + +++ AY  
Sbjct: 326 QRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSH 385

Query: 277 RGQIEEAAR---LFIEMPERNPV-SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAM 332
            G +++  R   L I++     V   T +ID Y +  KL EA  L ++MP ++     A+
Sbjct: 386 LGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAI 445

Query: 333 ISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKD 387
           ISG   +    EA  +F ++       D V +  ++   +  G +D+  + F  M V  D
Sbjct: 446 ISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYD 505

Query: 388 IVT----WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFL------------ 431
           IV     +  M     +  Q+D+A    + M  + ++  W AL+                
Sbjct: 506 IVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVAS 565

Query: 432 QNEFHLDALKI--FVLMT 447
           QN F LD   +  +VLM+
Sbjct: 566 QNLFELDPENVGYYVLMS 583



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/435 (24%), Positives = 178/435 (40%), Gaps = 96/435 (22%)

Query: 103 MFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKL 162
           + RP +F+   ++  Y R G + +A ++FD + ++ D   WNAM++G  +     EA  L
Sbjct: 98  LVRPSVFTSGSLVHAYLRFGRISEAYKVFDEM-SERDVPAWNAMLSGLCRNARAAEAVGL 156

Query: 163 LDAMPS---------------------------------------KNIVSWNSMLSGYTK 183
              M                                         K +   N+++  Y K
Sbjct: 157 FGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGK 216

Query: 184 NGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTM 239
            G +  A   F  ME RD+V+WN ++ G  +     +A K FQ +       +V++ V++
Sbjct: 217 LGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSL 276

Query: 240 LSGYARNGRMLEARRLFDQM-----PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
            S  A+ G    A+ L   +      + +++A NA++  Y +   IE A R+F  MP ++
Sbjct: 277 ASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQD 336

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQM-----------PYKNIAAQTAMISGYVQNKRMD 343
            VSW T+I GY++    +EA      M            + ++    + +    Q  RM 
Sbjct: 337 SVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRM- 395

Query: 344 EANQIFDKIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIR 402
             + +  KIG + DV     +I  YA+CG++ EA+ LF +M  +    WN          
Sbjct: 396 --HALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWN---------- 443

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
                                 A+ISG   +    +AL +F  M QEG K DH T    L
Sbjct: 444 ----------------------AIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLL 481

Query: 463 SACAHLAALQLGRQI 477
           +AC+H   +  GR  
Sbjct: 482 AACSHAGLVDQGRSF 496



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 134/252 (53%), Gaps = 8/252 (3%)

Query: 383 MVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI 442
           +V   + T  +++  Y +  ++ +A K+F+EM + R+  +WNA++SG  +N    +A+ +
Sbjct: 98  LVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSE-RDVPAWNAMLSGLCRNARAAEAVGL 156

Query: 443 FVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
           F  M  EG   D  T++  L  C  L    L   +H  A+K G   +LFV N+LI +Y K
Sbjct: 157 FGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGK 216

Query: 503 CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
            G ++ A+ +F   +  D+++WNS+I+G    G    A+K+F+ M   GV+PD +T + +
Sbjct: 217 LGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSL 276

Query: 563 LSACSHVGLVDG-GLKLFEC--MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMK 619
            SA +  G  DG   K   C  M   + ++ ++   A ++D+ ++   ++ A  M   M 
Sbjct: 277 ASAIAQGG--DGRSAKSLHCYVMRRGWDVDDIIAGNA-IVDMYAKLSNIEAAQRMFDSMP 333

Query: 620 IKPNAGIWGTLL 631
           ++ +   W TL+
Sbjct: 334 VQDSVS-WNTLI 344



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 11/164 (6%)

Query: 476 QIHHLAIKSGYVN-DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
           Q+H  A++ G V   +F   SL+  Y + GRI  A  +F +    DV +WN++++G   N
Sbjct: 88  QLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRN 147

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLV-- 592
             A EA+ LF  MV EGVA D VT   VL  C     V  G ++   +  VYA++  +  
Sbjct: 148 ARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMC-----VLLGDQVLALVMHVYAVKHGLDK 202

Query: 593 EHYAC--MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGAC 634
           E + C  +ID+  + G L+EA  +  GM+ + +   W +++  C
Sbjct: 203 ELFVCNALIDVYGKLGMLEEAQCVFHGMECR-DLVTWNSIISGC 245


>gi|297817672|ref|XP_002876719.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322557|gb|EFH52978.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1005

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 229/755 (30%), Positives = 369/755 (48%), Gaps = 79/755 (10%)

Query: 50  NSMISAYA------KNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
           NS I AYA         R     K+F++M  R   +WN++I  Y+ N +   A  ++  M
Sbjct: 94  NSPIEAYAYLLELCGKSRALSQEKVFDEMRDRTAFAWNALIGAYVSNGEPASALFIYRNM 153

Query: 104 ----FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNY 156
                  DL+S+ +++    +  ++    EL  +L            NA+V+ YAK  + 
Sbjct: 154 RVEGVPLDLYSFPVLLKACGKLRDIRSGTELHCMLVKLGFNSTGFIVNALVSMYAKTDHL 213

Query: 157 NEAKKLLDAMPSK-NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
           + AK+L DA   K + V WNS+LS Y+ +G+     + F  M+     S     + Y  +
Sbjct: 214 SAAKRLFDASQEKGDAVLWNSILSSYSTSGKSLETLQLFREMQMTGPAS-----NSYTIV 268

Query: 216 DDLDSAWKF-FQKIPEQ------------NVVSWVTMLSGYARNGRMLEARRLFDQMPIR 262
             L +   F + K+ ++             V     +++ YAR G+MLEA R+   M   
Sbjct: 269 SALTACEGFSYAKLGKEIHAAVLKSTHSFEVYVCNALIAMYARCGKMLEAGRILRLMNNA 328

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARRL- 317
           +VV WN++I  YVQ    +EA + F +M     + + VS T++I    R++ L     L 
Sbjct: 329 DVVTWNSLIKGYVQNLMYKEALQFFCDMIAAGHKPDEVSLTSVIAASGRLSNLLAGMELH 388

Query: 318 ---LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMD 374
              +      N+     +I  Y +        + F  +   D++ W  +I GYA      
Sbjct: 389 AYVIKHGWDSNLLVGNTLIDMYSKCNLTCYMGRAFLMMHEKDLISWTTIIAGYALNDCHV 448

Query: 375 EAINLFRQMVNK--------------------------------------DIVTWNTMIA 396
           EA+ LFR +  K                                      D V  N ++ 
Sbjct: 449 EALQLFRDVAKKRMEIDEMMLGSILRACSVLKSMLIVKEIHCHILRKGLIDTVIQNELVD 508

Query: 397 GYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHS 456
            Y + R M  A ++FE + K ++ VSW ++IS    N    +A+++F  M + G  AD  
Sbjct: 509 VYGKCRNMGYASRVFESI-KGKDVVSWTSMISSSALNGNENEAVELFRRMAETGLLADSV 567

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
            L C LSA A L+AL+ GR+IH   ++ G+  +  +  +++ MYA CG +Q+A+ +F   
Sbjct: 568 ALLCILSAAASLSALKKGREIHGYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRI 627

Query: 517 DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGL 576
           +   ++ + S+I  Y ++G    +++LF +M  E V+PD ++F+ +L ACSH GL+D G 
Sbjct: 628 ERKGLLQYTSMINAYGMHGCGKASVELFNKMRHENVSPDHISFLALLYACSHAGLLDEGR 687

Query: 577 KLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRM 636
           +  + M   Y +EP  EHY C++D+L RA  + EAFE VK MK +P   +W  LL ACR 
Sbjct: 688 RFLKIMELEYKLEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTTEVWCALLAACRS 747

Query: 637 HQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCS 696
           H   ++G IA ++L ELEP+      L+SN+ AE GRW++VEKVR  M+ SG +K PGCS
Sbjct: 748 HSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCS 807

Query: 697 WIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           WIE+  ++H F + D     T EI   L  +  ++
Sbjct: 808 WIEMDGKVHKFTARDKSHPETKEIYEKLSEVTRKL 842



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 94/414 (22%), Positives = 175/414 (42%), Gaps = 42/414 (10%)

Query: 3   ASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRV 62
           A LKS  +   YV N    I    + G++ EA +I   M+  + VT+NS+I  Y +N   
Sbjct: 289 AVLKSTHSFEVYVCNA--LIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGYVQNLMY 346

Query: 63  NDARKLFEQM----PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALM 114
            +A + F  M     + + VS  S+IA       +    EL   + +     +L     +
Sbjct: 347 KEALQFFCDMIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWDSNLLVGNTL 406

Query: 115 ITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKL----------LD 164
           I  Y++          F L+ +++D   W  ++AGYA    + EA +L          +D
Sbjct: 407 IDMYSKCNLTCYMGRAF-LMMHEKDLISWTTIIAGYALNDCHVEALQLFRDVAKKRMEID 465

Query: 165 AMPSKNIVSWNSMLSG--YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAW 222
            M   +I+   S+L      K    H+  K        D V  N ++D Y +  ++  A 
Sbjct: 466 EMMLGSILRACSVLKSMLIVKEIHCHILRKGL-----IDTVIQNELVDVYGKCRNMGYAS 520

Query: 223 KFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI---------AA 273
           + F+ I  ++VVSW +M+S  A NG   EA  LF +M    ++A +  +          +
Sbjct: 521 RVFESIKGKDVVSWTSMISSSALNGNENEAVELFRRMAETGLLADSVALLCILSAAASLS 580

Query: 274 YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMI 333
            +++G+      L         ++   ++D Y     L  A+ + D++  K +   T+MI
Sbjct: 581 ALKKGREIHGYLLRKGFCLEGSIA-VAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMI 639

Query: 334 SGYVQNKRMDEANQIFDKIGTHDV----VCWNVMIKGYAQCGRMDEAINLFRQM 383
           + Y  +     + ++F+K+   +V    + +  ++   +  G +DE     + M
Sbjct: 640 NAYGMHGCGKASVELFNKMRHENVSPDHISFLALLYACSHAGLLDEGRRFLKIM 693



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 123/294 (41%), Gaps = 43/294 (14%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           QN+ +   GK   +  A ++F  +  K+ V++ SMIS+ A NG  N+A +LF +M +  L
Sbjct: 503 QNELVDVYGKCRNMGYASRVFESIKGKDVVSWTSMISSSALNGNENEAVELFRRMAETGL 562

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
           ++                           D  +   +++       L+K RE+   L  K
Sbjct: 563 LA---------------------------DSVALLCILSAAASLSALKKGREIHGYLLRK 595

Query: 138 E---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
               + +   A+V  YA  G+   AK + D +  K ++ + SM++ Y  +G    + + F
Sbjct: 596 GFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKASVELF 655

Query: 195 EAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSW----VTMLSGYAR 245
             M   +V    +S+  +L        LD   +F + +  E  +  W    V ++    R
Sbjct: 656 NKMRHENVSPDHISFLALLYACSHAGLLDEGRRFLKIMELEYKLEPWPEHYVCLVDMLGR 715

Query: 246 NGRMLEARRLFDQMPIRNVV-AWNAMIAA---YVQRGQIEEAARLFIEMPERNP 295
              ++EA      M        W A++AA   + ++   E AA+  +E+  +NP
Sbjct: 716 ANCVVEAFEFVKMMKTEPTTEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNP 769


>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
 gi|194696634|gb|ACF82401.1| unknown [Zea mays]
          Length = 615

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 159/434 (36%), Positives = 264/434 (60%), Gaps = 4/434 (0%)

Query: 301 MIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW 360
           +ID Y +   L +A+++ D+M  +++ +    ++  V+   +D A  +FD++   D V W
Sbjct: 170 LIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKDTVSW 229

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
           N M+ GYA+ G  ++A  LF++M  +++V+W+T+++ Y +   M+ A  IF++M   +N 
Sbjct: 230 NTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKM-PAKNL 288

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
           V+W  ++S   Q     +A ++F  M     + D   +   L+ACA   +L LG++IH  
Sbjct: 289 VTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRH 348

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGNAT 538
             +        V N+L+ M+ KCG +  A+ +F D + V  D++SWN +I G+A++G   
Sbjct: 349 VRQRKLSRSTLVCNALMDMFCKCGCVNRADYIF-DTEIVEKDLVSWNIIIGGFAMHGPGE 407

Query: 539 EAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACM 598
           +A++LF +M  +G  PD VT I VLSAC+H+GLV+ G + F  M   Y I+P +EHY CM
Sbjct: 408 KALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCM 467

Query: 599 IDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKT 658
           +DLL R G + EA +M+K M  +PN  IWG+LL ACR+H+N++   +AV +LS L+P   
Sbjct: 468 VDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNVEYAELAVNELSNLQPSSA 527

Query: 659 SCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTA 718
             YA+LSN++AEAG+W ++ K RV M+G+G+QK  G SWIE+    H F  GD K   + 
Sbjct: 528 GNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWIELNEAFHEFTVGDRKHPESD 587

Query: 719 EICNTLKTLAAQIR 732
           +I + +  L++ ++
Sbjct: 588 QISDMIDRLSSHVK 601



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/404 (28%), Positives = 208/404 (51%), Gaps = 25/404 (6%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFE--------QMPQRNLVSWNSMIAGY 87
           ++  Q   ++  T + +I++YA   RV   R +F           P    +   +++  Y
Sbjct: 48  QLLKQGLHRDPHTASKLIASYALLRRVPACRCVFSAAVALPNSPFPSSTTLLTKTLLRAY 107

Query: 88  LHNDKVKEARELF-DKMFRP-DLFSWALMITCYTRKG--ELEKARELFDLLPNKEDTACW 143
             N     A  +F D   R    F+++ +I      G   +  A      L + EDT   
Sbjct: 108 ALNSLPHAALAVFLDVPLRQRGTFTYSFLIKALAAAGLTPVRGAHAHVVKLGSAEDTFVG 167

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           NA++  Y+K    ++AKK+ D M ++++VSWN+ ++   + GE+  A   F+ M E+D V
Sbjct: 168 NALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKDTV 227

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRN 263
           SWN MLDGY +  + + A++ FQ++P +NVVSW T++S Y + G M  AR +FD+MP +N
Sbjct: 228 SWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKN 287

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARRLLD 319
           +V W  M++A  Q+G +EEA RLF EM     E + ++  +++        L   +R+  
Sbjct: 288 LVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHR 347

Query: 320 QMPYKNIAAQT----AMISGYVQNKRMDEANQIFD-KIGTHDVVCWNVMIKGYAQCGRMD 374
            +  + ++  T    A++  + +   ++ A+ IFD +I   D+V WN++I G+A  G  +
Sbjct: 348 HVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGE 407

Query: 375 EAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           +A+ LF QM     + D VT   +++    +  +++  + F  M
Sbjct: 408 KALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANM 451



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 177/328 (53%), Gaps = 19/328 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            F  N  I    K+  + +A K+F +M+ ++ V++N+ ++A  + G V+ AR +F++MP+
Sbjct: 164 TFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPE 223

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           ++ VSWN+M+ GY    + ++A ELF +M   ++ SW+ +++ Y +KG++E AR +FD +
Sbjct: 224 KDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKM 283

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKL----LDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           P K +   W  MV+  A+ G   EA +L    +DA    ++++  S+L+   ++G + L 
Sbjct: 284 PAK-NLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALG 342

Query: 191 SKFFEAMEERDV----VSWNLMLDGYVELDDLDSA-WKFFQKIPEQNVVSWVTMLSGYAR 245
            +    + +R +    +  N ++D + +   ++ A + F  +I E+++VSW  ++ G+A 
Sbjct: 343 KRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAM 402

Query: 246 NGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS---- 297
           +G   +A  LF QM  +    + V    +++A    G +EE  R F  M     +     
Sbjct: 403 HGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIE 462

Query: 298 -WTTMIDGYVRIAKLDEARRLLDQMPYK 324
            +  M+D   R   + EA  ++ +MP++
Sbjct: 463 HYGCMVDLLGRGGLIKEAVDMIKRMPWE 490



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 162/308 (52%), Gaps = 18/308 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  +  + + G V+ A  +F +M +K+TV++N+M+  YAK G    A +LF++MP 
Sbjct: 195 VVSWNTAMAAMVRQGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPG 254

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN+VSW+++++ Y     ++ AR +FDKM   +L +W +M++   +KG +E+A  LF  +
Sbjct: 255 RNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEM 314

Query: 135 PNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMP----SKNIVSWNSMLSGYTKNGEM 187
            +     D     +++A  A+ G+    K++   +     S++ +  N+++  + K G +
Sbjct: 315 MDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCV 374

Query: 188 HLASKFFEA-MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSG 242
           + A   F+  + E+D+VSWN+++ G+      + A + F ++ +Q    + V+ + +LS 
Sbjct: 375 NRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSA 434

Query: 243 YARNGRMLEARRLFDQMPI-----RNVVAWNAMIAAYVQRGQIEEAARLFIEMP-ERNPV 296
               G + E RR F  M         +  +  M+    + G I+EA  +   MP E N V
Sbjct: 435 CTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEV 494

Query: 297 SWTTMIDG 304
            W +++  
Sbjct: 495 IWGSLLSA 502



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/369 (21%), Positives = 148/369 (40%), Gaps = 57/369 (15%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G  V + +  ++   K G +E A  IF +M  KN VT+  M+SA A+ G V +A +LF +
Sbjct: 254 GRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTE 313

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           M                            D     D+ +   ++      G L   + + 
Sbjct: 314 M---------------------------MDAAIELDVIAVVSILAACAESGSLALGKRIH 346

Query: 132 DLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDA-MPSKNIVSWNSMLSGYTKNGEM 187
             +  ++    T   NA++  + K G  N A  + D  +  K++VSWN ++ G+  +G  
Sbjct: 347 RHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPG 406

Query: 188 HLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIP-----EQNVVSWVT 238
             A + F  M+++    D V+   +L     +  ++   +FF  +      +  +  +  
Sbjct: 407 EKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGC 466

Query: 239 MLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
           M+    R G + EA  +  +MP   N V W ++++A      +E A     E+    P S
Sbjct: 467 MVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNVEYAELAVNELSNLQPSS 526

Query: 298 ---WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ-----------NKRMD 343
              +  + + Y    K  +  +   QM  K   +Q    S +++           +++  
Sbjct: 527 AGNYAVLSNIYAEAGKWSDMAKARVQM--KGTGSQKTAGSSWIELNEAFHEFTVGDRKHP 584

Query: 344 EANQIFDKI 352
           E++QI D I
Sbjct: 585 ESDQISDMI 593


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 185/553 (33%), Positives = 301/553 (54%), Gaps = 21/553 (3%)

Query: 178 LSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE-LDDLDSAWKFFQKIPEQ----N 232
           ++  +    +  A K F+ + + +  +WN ++  Y    D + S W F   + E     N
Sbjct: 71  MAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPN 130

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPIR-----NVVAWNAMIAAYVQRGQIEEAARLF 287
             ++  ++   A    +   + L   M ++     +V   N++I  Y   G ++ A ++F
Sbjct: 131 KYTFPFLIKAAAEVSSLSLGQSLHG-MAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVF 189

Query: 288 IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMD 343
             + E++ VSW +MI+G+V+    D+A  L  +M  +++ A       ++S   + + ++
Sbjct: 190 TTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLE 249

Query: 344 EANQIFDKIGTHDV----VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYA 399
              Q+   I  + V       N M+  Y +CG +++A  LF  M  KD VTW TM+ GYA
Sbjct: 250 FGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYA 309

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF-VLMTQEGKKADHSTL 458
                + A ++   M  +++ V+WNALIS + QN    +AL +F  L  Q+  K +  TL
Sbjct: 310 ISEDYEAAREVLNSM-PQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITL 368

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
              LSACA + AL+LGR IH    K G   +  V ++LI MY+KCG ++ +  +F   + 
Sbjct: 369 VSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEK 428

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
            DV  W+++I G A++G   EA+ +F +M    V P+ VTF  V  ACSH GLVD    L
Sbjct: 429 RDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESL 488

Query: 579 FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQ 638
           F  M   Y I P  +HYAC++D+L R+G L++A + ++ M I P+  +WG LLGAC++H 
Sbjct: 489 FHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHA 548

Query: 639 NIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWI 698
           N+ L  +A  +L ELEP+    + LLSN++A+ G+W+ V ++R  M  +G +K+PGCS I
Sbjct: 549 NLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSI 608

Query: 699 EVKNQIHTFLSGD 711
           E+   IH FLSGD
Sbjct: 609 EIDGMIHEFLSGD 621



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 187/410 (45%), Gaps = 60/410 (14%)

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHN-DKVKEARELFDKMFR----PDLFSWALMITCYT 119
           ARK+F+++P+ N  +WN++I  Y    D V       D +      P+ +++  +I    
Sbjct: 83  ARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAA 142

Query: 120 RKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNS 176
               L   + L  +        D    N+++  Y   G+ + A K+   +  K++VSWNS
Sbjct: 143 EVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNS 202

Query: 177 MLSGYTKNGEMHLASKFFEAMEERDV---------------------------------- 202
           M++G+ + G    A + F+ ME  DV                                  
Sbjct: 203 MINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENR 262

Query: 203 VSWNL-----MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFD 257
           V+ NL     MLD Y +   ++ A + F  + E++ V+W TML GYA +     AR + +
Sbjct: 263 VNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLN 322

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-----ERNPVSWTTMIDGYVRIAKLD 312
            MP +++VAWNA+I+AY Q G+  EA  +F E+      + N ++  + +    ++  L+
Sbjct: 323 SMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALE 382

Query: 313 EARRLLDQMPYK----NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
             R +   +       N    +A+I  Y +   ++++ ++F+ +   DV  W+ MI G A
Sbjct: 383 LGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLA 442

Query: 369 QCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
             G  +EA+++F +M    V  + VT+  +    +    +D+A  +F +M
Sbjct: 443 MHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQM 492



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 112/482 (23%), Positives = 202/482 (41%), Gaps = 95/482 (19%)

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS-KFFEAMEE------ 199
           +A  +   +   A+K+ D +P  N  +WN+++  Y    +  L+   F + + E      
Sbjct: 71  MAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPN 130

Query: 200 ---------------------------------RDVVSWNLMLDGYVELDDLDSAWKFFQ 226
                                             DV   N ++  Y    DLDSA K F 
Sbjct: 131 KYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFT 190

Query: 227 KIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM--------------------PIR---- 262
            I E++VVSW +M++G+ + G   +A  LF +M                     IR    
Sbjct: 191 TIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEF 250

Query: 263 ---------------NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVR 307
                          N+   NAM+  Y + G IE+A RLF  M E++ V+WTTM+DGY  
Sbjct: 251 GRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAI 310

Query: 308 IAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWN--VMIK 365
               + AR +L+ MP K+I A  A+IS Y QN + +EA  +F ++     +  N   ++ 
Sbjct: 311 SEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVS 370

Query: 366 GYAQCGRMDEAINLFR---QMVNKDIVTWN-----TMIAGYAQIRQMDDAVKIFEEMGKR 417
             + C ++  A+ L R     + K  +  N      +I  Y++   ++ + ++F  + ++
Sbjct: 371 TLSACAQVG-ALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSV-EK 428

Query: 418 RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI 477
           R+   W+A+I G   +    +A+ +F  M +   K +  T      AC+H   +     +
Sbjct: 429 RDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESL 488

Query: 478 -HHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS--WNSLIAGYAIN 534
            H +    G V +      ++ +  + G ++ A + F +A P+   +  W +L+    I+
Sbjct: 489 FHQMESNYGIVPEEKHYACIVDVLGRSGYLEKA-VKFIEAMPIPPSTSVWGALLGACKIH 547

Query: 535 GN 536
            N
Sbjct: 548 AN 549



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 127/486 (26%), Positives = 208/486 (42%), Gaps = 84/486 (17%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL- 108
           NS+I  Y   G ++ A K+F  + ++++VSWNSMI G++      +A ELF KM   D+ 
Sbjct: 170 NSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVK 229

Query: 109 ---FSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKL 162
               +   +++   +   LE  R++   +       +    NAM+  Y K G+  +AK+L
Sbjct: 230 ASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRL 289

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAW 222
            DAM  K+ V+W +ML GY  + +   A +   +M ++D+V+WN ++  Y +    + A 
Sbjct: 290 FDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEAL 349

Query: 223 KFFQKIPEQ-----NVVSWVTMLSGYARNGRMLEARRLFDQMP---IR-NVVAWNAMIAA 273
             F ++  Q     N ++ V+ LS  A+ G +   R +   +    IR N    +A+I  
Sbjct: 350 IVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHM 409

Query: 274 YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMI 333
           Y + G +E++  +F  + +R+   W+ MI G       +EA      M YK         
Sbjct: 410 YSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAV----DMFYK--------- 456

Query: 334 SGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVT-- 390
                   M EAN   + +   +V C        +  G +DEA +LF QM  N  IV   
Sbjct: 457 --------MQEANVKPNGVTFTNVFC------ACSHTGLVDEAESLFHQMESNYGIVPEE 502

Query: 391 --WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
             +  ++    +   ++ AVK  E M    +T  W AL          L A KI      
Sbjct: 503 KHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGAL----------LGACKI------ 546

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
                 H+ L  A  AC  L  L+      H+               L  +YAK G+ +N
Sbjct: 547 ------HANLNLAEMACTRLLELEPRNDGAHVL--------------LSNIYAKLGKWEN 586

Query: 509 AELLFK 514
              L K
Sbjct: 587 VSELRK 592



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 161/331 (48%), Gaps = 22/331 (6%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS VF  N  I      G ++ A K+F+ + +K+ V++NSMI+ + + G  + A +LF++
Sbjct: 163 GSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKK 222

Query: 72  MPQRNLVSWNSMIAGYLHN----DKVKEARELF----DKMFRPDLFSWALMITCYTRKGE 123
           M   ++ + +  + G L        ++  R++     +     +L     M+  YT+ G 
Sbjct: 223 MESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGS 282

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK 183
           +E A+ LFD +  K D   W  M+ GYA   +Y  A+++L++MP K+IV+WN+++S Y +
Sbjct: 283 IEDAKRLFDAMEEK-DNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQ 341

Query: 184 NGEMHLASKFFEAMEERDVVSWNLM-----LDGYVELDDLDSAWKFFQKIPEQ----NVV 234
           NG+ + A   F  ++ +  +  N +     L    ++  L+        I +     N  
Sbjct: 342 NGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFH 401

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE-- 292
               ++  Y++ G + ++R +F+ +  R+V  W+AMI      G   EA  +F +M E  
Sbjct: 402 VTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEAN 461

Query: 293 --RNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
              N V++T +         +DEA  L  QM
Sbjct: 462 VKPNGVTFTNVFCACSHTGLVDEAESLFHQM 492



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/326 (21%), Positives = 153/326 (46%), Gaps = 25/326 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +    K G +E+A ++F  M +K+ VT+ +M+  YA +     AR++   MPQ+++V
Sbjct: 271 NAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIV 330

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFDL 133
           +WN++I+ Y  N K  EA  +F ++      + +  +    ++   + G LE  R +   
Sbjct: 331 AWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSY 390

Query: 134 LPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           +     + +    +A++  Y+K G+  +++++ +++  +++  W++M+ G   +G  + A
Sbjct: 391 IKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEA 450

Query: 191 SKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQK-------IPEQNVVSWVTM 239
              F  M+E +V    V++  +         +D A   F +       +PE+   + +  
Sbjct: 451 VDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVD 510

Query: 240 LSGYARNGRMLEARRLFDQMPI-RNVVAWNAMIAA---YVQRGQIEEAARLFIEMPERNP 295
           + G  R+G + +A +  + MPI  +   W A++ A   +      E A    +E+  RN 
Sbjct: 511 VLG--RSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRND 568

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQM 321
            +   + + Y ++ K +    L   M
Sbjct: 569 GAHVLLSNIYAKLGKWENVSELRKHM 594



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 149/317 (47%), Gaps = 25/317 (7%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           N    N+M+  Y K G + DA++LF+ M +++ V+W +M+ GY  ++  + ARE+ + M 
Sbjct: 266 NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMP 325

Query: 105 RPDLFSWALMITCYTRKGELEKARELFDLLP----NKEDTACWNAMVAGYAKIGNYNEAK 160
           + D+ +W  +I+ Y + G+  +A  +F  L      K +     + ++  A++G   E  
Sbjct: 326 QKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGAL-ELG 384

Query: 161 KLLDAMPSKNIVSWN-----SMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
           + + +   K+ +  N     +++  Y+K G++  + + F ++E+RDV  W+ M+ G    
Sbjct: 385 RWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMH 444

Query: 216 DDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFDQMP-----IRNVVA 266
              + A   F K+ E NV    V++  +    +  G + EA  LF QM      +     
Sbjct: 445 GCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKH 504

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPERNPVS-WTTMIDGYVRIAKLDEAR----RLLDQM 321
           +  ++    + G +E+A +    MP     S W  ++      A L+ A     RLL+  
Sbjct: 505 YACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELE 564

Query: 322 PYKNIAAQTAMISGYVQ 338
           P +N  A   + + Y +
Sbjct: 565 P-RNDGAHVLLSNIYAK 580


>gi|15220808|ref|NP_173207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75175206|sp|Q9LNP2.1|PPR47_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g17630
 gi|8778465|gb|AAF79473.1|AC022492_17 F1L3.33 [Arabidopsis thaliana]
 gi|332191495|gb|AEE29616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 731

 Score =  333 bits (855), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 195/622 (31%), Positives = 328/622 (52%), Gaps = 42/622 (6%)

Query: 146 MVAGYAKIGNYNEAKKLLDAMPS---KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV 202
           +++ YA++G   +A+ + + +      ++  WNS+L     +G    A + +  M +R +
Sbjct: 95  LISVYARLGLLLDARNVFETVSLVLLSDLRLWNSILKANVSHGLYENALELYRGMRQRGL 154

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIP--------------EQNVVSWVTMLSGYARNGR 248
                  DGY+ L  +  A ++  +                ++N+     +L+ Y + GR
Sbjct: 155 TG-----DGYI-LPLILRACRYLGRFGLCRAFHTQVIQIGLKENLHVVNELLTLYPKAGR 208

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF--IEMPERNP--VSWTTMIDG 304
           M +A  LF +MP+RN ++WN MI  + Q    E A ++F  ++  E  P  V+WT+++  
Sbjct: 209 MGDAYNLFVEMPVRNRMSWNVMIKGFSQEYDCESAVKIFEWMQREEFKPDEVTWTSVLSC 268

Query: 305 YVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV------- 357
           + +  K ++  +    M     A     ++ +       EA  I +K+  + +       
Sbjct: 269 HSQCGKFEDVLKYFHLMRMSGNAVSGEALAVFFSVCAELEALSIAEKVHGYVIKGGFEEY 328

Query: 358 -VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
               N +I  Y + G++ +A +LFRQ+ NK I +WN++I  +    ++D+A+ +F E+ +
Sbjct: 329 LPSRNALIHVYGKQGKVKDAEHLFRQIRNKGIESWNSLITSFVDAGKLDEALSLFSELEE 388

Query: 417 -------RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
                  + N V+W ++I G        D+L+ F  M      A+  T+ C LS CA L 
Sbjct: 389 MNHVCNVKANVVTWTSVIKGCNVQGRGDDSLEYFRQMQFSKVLANSVTICCILSICAELP 448

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
           AL LGR+IH   I++    ++ V N+L+ MYAKCG +    L+F+     D+ISWNS+I 
Sbjct: 449 ALNLGREIHGHVIRTSMSENILVQNALVNMYAKCGLLSEGSLVFEAIRDKDLISWNSIIK 508

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE 589
           GY ++G A +A+ +F+ M+  G  PD +  + VLSACSH GLV+ G ++F  M++ + +E
Sbjct: 509 GYGMHGFAEKALSMFDRMISSGFHPDGIALVAVLSACSHAGLVEKGREIFYSMSKRFGLE 568

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649
           P  EHYAC++DLL R G L EA E+VK M ++P   + G LL +CRMH+N+ +      +
Sbjct: 569 PQQEHYACIVDLLGRVGFLKEASEIVKNMPMEPKVCVLGALLNSCRMHKNVDIAEGIASQ 628

Query: 650 LSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLS 709
           LS LEP++T  Y LLSN+++  GRW+E   VR   +    +K  G SWIEVK + + F S
Sbjct: 629 LSVLEPERTGSYMLLSNIYSAGGRWEESANVRALAKKKDLKKVSGSSWIEVKKKKYKFSS 688

Query: 710 GDPKQCRTAEICNTLKTLAAQI 731
           G   Q     I   L+ L + +
Sbjct: 689 GSIVQSEFETIYPVLEDLVSHM 710



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 183/403 (45%), Gaps = 56/403 (13%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           ++N    N +++ Y K GR+ DA  LF +MP RN +SWN MI G+      + A ++F+ 
Sbjct: 190 KENLHVVNELLTLYPKAGRMGDAYNLFVEMPVRNRMSWNVMIKGFSQEYDCESAVKIFEW 249

Query: 103 M----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYA------- 151
           M    F+PD  +W  +++C+++ G+ E   + F L+    +     A+   ++       
Sbjct: 250 MQREEFKPDEVTWTSVLSCHSQCGKFEDVLKYFHLMRMSGNAVSGEALAVFFSVCAELEA 309

Query: 152 -----KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN 206
                K+  Y       + +PS+     N+++  Y K G++  A   F  +  + + SWN
Sbjct: 310 LSIAEKVHGYVIKGGFEEYLPSR-----NALIHVYGKQGKVKDAEHLFRQIRNKGIESWN 364

Query: 207 LMLDGYVELDDLDSAWKFFQKIPEQ--------NVVSWVTMLSGYARNGRMLEARRLFDQ 258
            ++  +V+   LD A   F ++ E         NVV+W +++ G    GR  ++   F Q
Sbjct: 365 SLITSFVDAGKLDEALSLFSELEEMNHVCNVKANVVTWTSVIKGCNVQGRGDDSLEYFRQ 424

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
           M    V+A +  I   +          +  E+P  N       I G+V    + E     
Sbjct: 425 MQFSKVLANSVTICCILS---------ICAELPALN---LGREIHGHVIRTSMSE----- 467

Query: 319 DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
                 NI  Q A+++ Y +   + E + +F+ I   D++ WN +IKGY   G  ++A++
Sbjct: 468 ------NILVQNALVNMYAKCGLLSEGSLVFEAIRDKDLISWNSIIKGYGMHGFAEKALS 521

Query: 379 LFRQMVNK----DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
           +F +M++     D +    +++  +    ++   +IF  M KR
Sbjct: 522 MFDRMISSGFHPDGIALVAVLSACSHAGLVEKGREIFYSMSKR 564



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 111/498 (22%), Positives = 203/498 (40%), Gaps = 101/498 (20%)

Query: 51  SMISAYAKNGRVNDARKLFEQMP---QRNLVSWNSMIAGYLHNDKVKEARELFDKM---- 103
           ++IS YA+ G + DAR +FE +      +L  WNS++   + +   + A EL+  M    
Sbjct: 94  NLISVYARLGLLLDARNVFETVSLVLLSDLRLWNSILKANVSHGLYENALELYRGMRQRG 153

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAK 160
              D +   L++      G     R     +     KE+    N ++  Y K G   +A 
Sbjct: 154 LTGDGYILPLILRACRYLGRFGLCRAFHTQVIQIGLKENLHVVNELLTLYPKAGRMGDAY 213

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELD 216
            L   MP +N +SWN M+ G+++  +   A K FE M+      D V+W  +L  + +  
Sbjct: 214 NLFVEMPVRNRMSWNVMIKGFSQEYDCESAVKIFEWMQREEFKPDEVTWTSVLSCHSQCG 273

Query: 217 DLDSAWKFFQKIP---------------------------------------EQNVVSWV 237
             +   K+F  +                                        E+ + S  
Sbjct: 274 KFEDVLKYFHLMRMSGNAVSGEALAVFFSVCAELEALSIAEKVHGYVIKGGFEEYLPSRN 333

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP-- 295
            ++  Y + G++ +A  LF Q+  + + +WN++I ++V  G+++EA  LF E+ E N   
Sbjct: 334 ALIHVYGKQGKVKDAEHLFRQIRNKGIESWNSLITSFVDAGKLDEALSLFSELEEMNHVC 393

Query: 296 ------VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ--------NKR 341
                 V+WT++I G     + D++     QM +  + A +  I   +         N  
Sbjct: 394 NVKANVVTWTSVIKGCNVQGRGDDSLEYFRQMQFSKVLANSVTICCILSICAELPALNLG 453

Query: 342 MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQI 401
            +    +     + +++  N ++  YA+CG + E   +F  + +KD+++WN++I GY   
Sbjct: 454 REIHGHVIRTSMSENILVQNALVNMYAKCGLLSEGSLVFEAIRDKDLISWNSIIKGYG-- 511

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
                                    + GF +      AL +F  M   G   D   L   
Sbjct: 512 -------------------------MHGFAEK-----ALSMFDRMISSGFHPDGIALVAV 541

Query: 462 LSACAHLAALQLGRQIHH 479
           LSAC+H   ++ GR+I +
Sbjct: 542 LSACSHAGLVEKGREIFY 559



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/390 (21%), Positives = 164/390 (42%), Gaps = 72/390 (18%)

Query: 9   GNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKL 68
           G    Y+ ++N  I   GK G+V++A  +F Q+  K   ++NS+I+++   G++++A  L
Sbjct: 323 GGFEEYLPSRNALIHVYGKQGKVKDAEHLFRQIRNKGIESWNSLITSFVDAGKLDEALSL 382

Query: 69  FEQMPQ--------RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCY-- 118
           F ++ +         N+V+W S+I G     +  ++ E F +M    + + ++ I C   
Sbjct: 383 FSELEEMNHVCNVKANVVTWTSVIKGCNVQGRGDDSLEYFRQMQFSKVLANSVTICCILS 442

Query: 119 --TRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS 173
                  L   RE+   +      E+    NA+V  YAK G  +E   + +A+  K+++S
Sbjct: 443 ICAELPALNLGREIHGHVIRTSMSENILVQNALVNMYAKCGLLSEGSLVFEAIRDKDLIS 502

Query: 174 WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV 233
           WNS++ GY  +G    A   F+ M     +S     DG                      
Sbjct: 503 WNSIIKGYGMHGFAEKALSMFDRM-----ISSGFHPDG---------------------- 535

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           ++ V +LS  +  G + + R +F  M  R                        F   P++
Sbjct: 536 IALVAVLSACSHAGLVEKGREIFYSMSKR------------------------FGLEPQQ 571

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKI 352
               +  ++D   R+  L EA  ++  MP +  +    A+++    +K +D A  I  ++
Sbjct: 572 E--HYACIVDLLGRVGFLKEASEIVKNMPMEPKVCVLGALLNSCRMHKNVDIAEGIASQL 629

Query: 353 GTHD---VVCWNVMIKGYAQCGRMDEAINL 379
              +      + ++   Y+  GR +E+ N+
Sbjct: 630 SVLEPERTGSYMLLSNIYSAGGRWEESANV 659


>gi|345505234|gb|AEN99841.1| chlororespiratory reduction 4, partial [Raphanus sativus]
          Length = 577

 Score =  333 bits (855), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 181/524 (34%), Positives = 293/524 (55%), Gaps = 15/524 (2%)

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS---------GYARNGR 248
           E +D   WN ++  +    D   A   F  + E  V+     +S         G+A+ G 
Sbjct: 54  EIKDPFLWNAVIKSHSHGADPRKALLLFCLMLENGVLVDKFSMSLVLKACSRLGFAKEGM 113

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRI 308
            +    L       ++   N +I  Y++ G +  A ++F  MP+R+ VS+ +MIDGYV+ 
Sbjct: 114 QVHGF-LIKSRTWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKC 172

Query: 309 AKLDEARRLLDQMPY--KNIAAQTAMISGYVQNKR-MDEANQIFDKIGTHDVVCWNVMIK 365
             ++ A  L D MP   +N+    +MI GY Q    ++ A+++FD++   D++ WN MI 
Sbjct: 173 GLVESAGELFDLMPREKRNLITWNSMIGGYAQRADGVNVASKLFDEMPEKDLISWNSMIG 232

Query: 366 GYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
           GY + GR+++A  LF  M  +D+VTW  MI GY ++  +  A  +F++M   R+ V++N+
Sbjct: 233 GYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHQAKTLFDQM-PHRDVVAYNS 291

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
           ++SGF+QN +H++AL++F  M +E     D +TL   LSA A L  L     +H   ++ 
Sbjct: 292 MMSGFVQNRYHIEALEVFNHMEKESHLSPDETTLVIVLSAIAQLGRLTKAIDMHLYIVEK 351

Query: 485 GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLF 544
            ++    +G +LI MY+KCG IQ+A  +F+  +   +  WN++I G A++G    A  + 
Sbjct: 352 RFLLSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDML 411

Query: 545 EEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSR 604
            ++    + PD +TF+GVL+ACSH GLV  GL  FE M   + IEP ++HY CM+D+L+R
Sbjct: 412 LQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILAR 471

Query: 605 AGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALL 664
           +G ++ A  +++ M I+PN  IW T L AC  H+  + G +  + L        S Y LL
Sbjct: 472 SGSIELAKNLIEEMPIEPNDVIWRTFLNACSHHKEFETGELVAKHLILQAGYNPSSYVLL 531

Query: 665 SNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFL 708
           SNM+A  G W +V +VR  M+    +K PGCSWIE+  ++H FL
Sbjct: 532 SNMYASNGMWKDVRRVRTMMKEKKIEKLPGCSWIELDGRVHEFL 575



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/294 (35%), Positives = 161/294 (54%), Gaps = 13/294 (4%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F QN  I    K G +  A ++F +M Q+++V+YNSMI  Y K G V  A +LF+ M
Sbjct: 126 SDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLVESAGELFDLM 185

Query: 73  P--QRNLVSWNSMIAGYLHN-DKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARE 129
           P  +RNL++WNSMI GY    D V  A +LFD+M   DL SW  MI  Y + G +E A+ 
Sbjct: 186 PREKRNLITWNSMIGGYAQRADGVNVASKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKG 245

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           LFD++P + D   W  M+ GY K+G  ++AK L D MP +++V++NSM+SG+ +N     
Sbjct: 246 LFDVMP-RRDVVTWAIMIDGYGKLGLVHQAKTLFDQMPHRDVVAYNSMMSGFVQNRYHIE 304

Query: 190 ASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV----SWVTML 240
           A + F  ME+      D  +  ++L    +L  L  A      I E+  +      V ++
Sbjct: 305 ALEVFNHMEKESHLSPDETTLVIVLSAIAQLGRLTKAIDMHLYIVEKRFLLSGKLGVALI 364

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
             Y++ G +  A R+F+ +  +++  WNAMI      G  E A  + +++  R+
Sbjct: 365 DMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLLQIERRS 418



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/396 (28%), Positives = 197/396 (49%), Gaps = 21/396 (5%)

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           +L   N +I  YL    +  AR++FD+M + D  S+  MI  Y + G +E A ELFDL+P
Sbjct: 127 DLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLVESAGELFDLMP 186

Query: 136 N-KEDTACWNAMVAGYAKIGN-YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
             K +   WN+M+ GYA+  +  N A KL D MP K+++SWNSM+ GY K+G +  A   
Sbjct: 187 REKRNLITWNSMIGGYAQRADGVNVASKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGL 246

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEAR 253
           F+ M  RDVV+W +M+DGY +L  +  A   F ++P ++VV++ +M+SG+ +N   +EA 
Sbjct: 247 FDVMPRRDVVTWAIMIDGYGKLGLVHQAKTLFDQMPHRDVVAYNSMMSGFVQNRYHIEAL 306

Query: 254 RLFDQMPIRNVVAWNA-----MIAAYVQRGQIEEAARLFIEMPERNPV----SWTTMIDG 304
            +F+ M   + ++ +      +++A  Q G++ +A  + + + E+  +        +ID 
Sbjct: 307 EVFNHMEKESHLSPDETTLVIVLSAIAQLGRLTKAIDMHLYIVEKRFLLSGKLGVALIDM 366

Query: 305 YVRIAKLDEARRLLDQMPYKNIAAQTAMISGY----VQNKRMDEANQIFDKIGTHDVVCW 360
           Y +   +  A R+ + +  K+I    AMI G     +     D   QI  +    D + +
Sbjct: 367 YSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLLQIERRSIKPDHITF 426

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVT-----WNTMIAGYAQIRQMDDAVKIFEEMG 415
             ++   +  G + E +  F  M  K  +      +  M+   A+   ++ A  + EEM 
Sbjct: 427 VGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSIELAKNLIEEMP 486

Query: 416 KRRNTVSWNALISGFLQN-EFHLDALKIFVLMTQEG 450
              N V W   ++    + EF    L    L+ Q G
Sbjct: 487 IEPNDVIWRTFLNACSHHKEFETGELVAKHLILQAG 522



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 111/378 (29%), Positives = 189/378 (50%), Gaps = 23/378 (6%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP--D 107
           N +I  Y K G +  AR++F++MPQR+ VS+NSMI GY+    V+ A ELFD M R   +
Sbjct: 132 NCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLVESAGELFDLMPREKRN 191

Query: 108 LFSWALMITCYTRKGE-LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           L +W  MI  Y ++ + +  A +LFD +P K D   WN+M+ GY K G   +AK L D M
Sbjct: 192 LITWNSMIGGYAQRADGVNVASKLFDEMPEK-DLISWNSMIGGYVKHGRIEDAKGLFDVM 250

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
           P +++V+W  M+ GY K G +H A   F+ M  RDVV++N M+ G+V+      A + F 
Sbjct: 251 PRRDVVTWAIMIDGYGKLGLVHQAKTLFDQMPHRDVVAYNSMMSGFVQNRYHIEALEVFN 310

Query: 227 KIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN----AMIAAYVQR 277
            + +++ +S      V +LS  A+ GR+ +A  +   +  +  +       A+I  Y + 
Sbjct: 311 HMEKESHLSPDETTLVIVLSAIAQLGRLTKAIDMHLYIVEKRFLLSGKLGVALIDMYSKC 370

Query: 278 GQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYV 337
           G I+ A R+F  +  ++   W  MI G       + A  +L Q+  ++I        G +
Sbjct: 371 GSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLLQIERRSIKPDHITFVGVL 430

Query: 338 ----QNKRMDEANQIFDKIGTHDVV-----CWNVMIKGYAQCGRMDEAINLFRQM-VNKD 387
                +  + E    F+ +     +      +  M+   A+ G ++ A NL  +M +  +
Sbjct: 431 NACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSIELAKNLIEEMPIEPN 490

Query: 388 IVTWNTMIAGYAQIRQMD 405
            V W T +   +  ++ +
Sbjct: 491 DVIWRTFLNACSHHKEFE 508



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 177/330 (53%), Gaps = 32/330 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMS--QKNTVTYNSMISAYAKNGR-VNDARKLFEQMPQR 75
           N  I    K G VE A ++F  M   ++N +T+NSMI  YA+    VN A KLF++MP++
Sbjct: 163 NSMIDGYVKCGLVESAGELFDLMPREKRNLITWNSMIGGYAQRADGVNVASKLFDEMPEK 222

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           +L+SWNSMI GY+ + ++++A+ LFD M R D+ +WA+MI  Y + G + +A+ LFD +P
Sbjct: 223 DLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHQAKTLFDQMP 282

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN-----------IVSWNSMLSGYTKN 184
           ++ D   +N+M++G+ +   + EA ++ + M  ++           ++S  + L   TK 
Sbjct: 283 HR-DVVAYNSMMSGFVQNRYHIEALEVFNHMEKESHLSPDETTLVIVLSAIAQLGRLTKA 341

Query: 185 GEMHLASKFFEAMEERDVVSWNL---MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
            +MHL       +E+R ++S  L   ++D Y +   +  A + F+ I  +++  W  M+ 
Sbjct: 342 IDMHLY-----IVEKRFLLSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIG 396

Query: 242 GYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
           G A +G    A  +  Q+  R++    + +  ++ A    G ++E    F  M  ++ + 
Sbjct: 397 GLAVHGLGESAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIE 456

Query: 298 -----WTTMIDGYVRIAKLDEARRLLDQMP 322
                +  M+D   R   ++ A+ L+++MP
Sbjct: 457 PRLQHYGCMVDILARSGSIELAKNLIEEMP 486



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 69/136 (50%)

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
           G+ ++   WNA+I           AL +F LM + G   D  +++  L AC+ L   + G
Sbjct: 53  GEIKDPFLWNAVIKSHSHGADPRKALLLFCLMLENGVLVDKFSMSLVLKACSRLGFAKEG 112

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
            Q+H   IKS   +DLF+ N LI +Y KCG +  A  +F      D +S+NS+I GY   
Sbjct: 113 MQVHGFLIKSRTWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKC 172

Query: 535 GNATEAIKLFEEMVME 550
           G    A +LF+ M  E
Sbjct: 173 GLVESAGELFDLMPRE 188


>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 178/473 (37%), Positives = 275/473 (58%), Gaps = 10/473 (2%)

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
           N++I  YV  G  E A +LF EM +RN VS+ TMI G+ ++  +     L   M    + 
Sbjct: 102 NSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLE 161

Query: 328 AQT-AMISGYVQNKRMDEAN-------QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
                M+   +   ++ E         QI   IG+ +++ +N ++  Y +C  +  A  +
Sbjct: 162 PDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKV 221

Query: 380 FRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDA 439
           F   + KD V+WNT+IAGYA++ +++ A  +F ++   R+ VSWN+LISG+ QN  ++  
Sbjct: 222 FDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQI-PTRDIVSWNSLISGYAQNGDYVTV 280

Query: 440 LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
             +F  M  E  K D  T+   +SA A + AL  GR IH LA+K     + F G++LI M
Sbjct: 281 KCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDM 340

Query: 500 YAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTF 559
           Y KCG I+ A ++F      DV +W ++I G+A +G   +A++LF  M  E   P+ VTF
Sbjct: 341 YCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQAE-TKPNDVTF 399

Query: 560 IGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMK 619
           + VL+ACSH GLVD GLK+F  M + Y+IEP VEHY C++DLL R+GRL +A  +++ M 
Sbjct: 400 VSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMP 459

Query: 620 IKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEK 679
           ++P+  IWG +L ACRMH+N++L   A+ +L +LEP+K   Y LLSN++A  GRW   + 
Sbjct: 460 MEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDS 519

Query: 680 VRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +R  M   G +K  GCS + V   +H F + + +  R  +IC+ L  L  ++R
Sbjct: 520 IREVMNSRGVKKIAGCSSVAVDGMVHDFTASNKQHPRWMDICSILSFLTNEMR 572



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 127/498 (25%), Positives = 223/498 (44%), Gaps = 107/498 (21%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           +F  +S++  +  NS+I  Y  NG    AR+LF++M  RN+VS+N+MI G+     +   
Sbjct: 90  VFGLLSKEEYLR-NSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGI 148

Query: 97  RELFDKM----FRPDLFS-----------------------------------WALMITC 117
            ELF  M      PD F+                                   +  ++  
Sbjct: 149 LELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDM 208

Query: 118 YTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSM 177
           Y +  EL+ AR++FD  P ++DT  WN ++AGYAK+G    A  L + +P+++IVSWNS+
Sbjct: 209 YVKCNELKLARKVFD-GPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSL 267

Query: 178 LSGYTKNGEMHLASKFFEAMEERDV----------------------------------- 202
           +SGY +NG+       F  M   +V                                   
Sbjct: 268 ISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLT 327

Query: 203 ----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
                S + ++D Y +   ++ A+  F +IPE++V +W TM++G+A +G   +A  LF  
Sbjct: 328 KIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSV 387

Query: 259 MPIR---NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVRIAK 310
           M      N V + +++AA    G ++E  ++F  M +R  +      +  ++D   R  +
Sbjct: 388 MQAETKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGR 447

Query: 311 LDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIF--------DKIGTHDVVCWN 361
           L +A  ++++MP + + +   A++S    ++ M+ A +          +K G + ++  N
Sbjct: 448 LLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEGGY-ILLSN 506

Query: 362 VMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
           V    YA CGR   + ++ R+++N   V     IAG + +  +D  V  F    K+    
Sbjct: 507 V----YATCGRWSYSDSI-REVMNSRGV---KKIAGCSSV-AVDGMVHDFTASNKQHPRW 557

Query: 422 SWNALISGFLQNEFHLDA 439
                I  FL NE  L+A
Sbjct: 558 MDICSILSFLTNEMRLEA 575



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 155/306 (50%), Gaps = 18/306 (5%)

Query: 6   KSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDA 65
           KSIG+    ++N    +    K   ++ A K+F    +K+TV++N++I+ YAK G +  A
Sbjct: 192 KSIGSSNLILYNA--LLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELA 249

Query: 66  RKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRK 121
             LF Q+P R++VSWNS+I+GY  N      + LF +MF    +PD  +   +I+     
Sbjct: 250 CDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEM 309

Query: 122 GELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSML 178
           G L++ R +  L   +  K +    +A++  Y K G+   A  + + +P K++ +W +M+
Sbjct: 310 GALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMI 369

Query: 179 SGYTKNGEMHLASKFFEAME---ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-----E 230
           +G+  +G  + A + F  M+   + + V++  +L        +D   K F  +      E
Sbjct: 370 TGFAFHGFGNKALELFSVMQAETKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIE 429

Query: 231 QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA-WNAMIAAYVQRGQIEEAARLFIE 289
             V  +  ++    R+GR+L+A  + ++MP+    + W A+++A      +E A R  +E
Sbjct: 430 PGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALME 489

Query: 290 MPERNP 295
           + +  P
Sbjct: 490 LLKLEP 495



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 164/387 (42%), Gaps = 89/387 (22%)

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFF--------- 225
           NS++  Y  NG    A + F+ M +R+VVS+N M+ G+ ++ ++    + F         
Sbjct: 102 NSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLE 161

Query: 226 ------------------------------QKIPEQNVVSWVTMLSGYARNGRMLEARRL 255
                                         + I   N++ +  +L  Y +   +  AR++
Sbjct: 162 PDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKV 221

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR 315
           FD    ++ V+WN +IA Y + G++E A  LF ++P R+ VSW ++I GY +       +
Sbjct: 222 FDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVK 281

Query: 316 RLLDQMPYKNIAAQTA----MISGYVQNKRMDE-------ANQIFDKIGTHDVVCWNVMI 364
            L  +M  +N+         +IS   +   +D+       A ++  KI   +    + +I
Sbjct: 282 CLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKI---EAFSGSALI 338

Query: 365 KGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
             Y +CG ++ A  +F Q+  KD+ TW TMI G+A           F   G +       
Sbjct: 339 DMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFA-----------FHGFGNK------- 380

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
                         AL++F +M  E K  D  T    L+AC+H   +  G +I   ++K 
Sbjct: 381 --------------ALELFSVMQAETKPND-VTFVSVLAACSHSGLVDEGLKIFS-SMKK 424

Query: 485 GYVNDLFVGN--SLITMYAKCGRIQNA 509
            Y  +  V +   L+ +  + GR+ +A
Sbjct: 425 RYSIEPGVEHYGCLVDLLCRSGRLLDA 451



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 8/167 (4%)

Query: 394 MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF-LQNEFHLDALKIFVLMTQEGKK 452
             +  +    ++ A+ +F       N   +N +I GF   NE    A  I+  M Q G  
Sbjct: 6   FFSAVSHPENLELAILLFNHFTPYPNLYIFNTMILGFPFSNE---KAFTIYRSMLQNGTY 62

Query: 453 ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN-DLFVGNSLITMYAKCGRIQNAEL 511
            D  T    L     +A +   +QIH  A+  G ++ + ++ NSLI  Y   G  + A  
Sbjct: 63  PDRQTFLYLLQTTKFVAEV---KQIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQ 119

Query: 512 LFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           LF +    +V+S+N++I G+A  GN    ++LF +M   G+ PD  T
Sbjct: 120 LFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFT 166


>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 178/473 (37%), Positives = 275/473 (58%), Gaps = 10/473 (2%)

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
           N++I  YV  G  E A +LF EM +RN VS+ TMI G+ ++  +     L   M    + 
Sbjct: 167 NSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLE 226

Query: 328 AQT-AMISGYVQNKRMDEAN-------QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
                M+   +   ++ E         QI   IG+ +++ +N ++  Y +C  +  A  +
Sbjct: 227 PDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKV 286

Query: 380 FRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDA 439
           F   + KD V+WNT+IAGYA++ +++ A  +F ++   R+ VSWN+LISG+ QN  ++  
Sbjct: 287 FDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQI-PTRDIVSWNSLISGYAQNGDYVTV 345

Query: 440 LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
             +F  M  E  K D  T+   +SA A + AL  GR IH LA+K     + F G++LI M
Sbjct: 346 KCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDM 405

Query: 500 YAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTF 559
           Y KCG I+ A ++F      DV +W ++I G+A +G   +A++LF  M  E   P+ VTF
Sbjct: 406 YCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVMQAE-TKPNDVTF 464

Query: 560 IGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMK 619
           + VL+ACSH GLVD GLK+F  M + Y+IEP VEHY C++DLL R+GRL +A  +++ M 
Sbjct: 465 VSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMP 524

Query: 620 IKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEK 679
           ++P+  IWG +L ACRMH+N++L   A+ +L +LEP+K   Y LLSN++A  GRW   + 
Sbjct: 525 MEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDS 584

Query: 680 VRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +R  M   G +K  GCS + V   +H F + + +  R  +IC+ L  L  ++R
Sbjct: 585 IREVMNSRGVKKIAGCSSVAVDGMVHDFTASNKQHPRWMDICSILSFLTNEMR 637



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 127/498 (25%), Positives = 223/498 (44%), Gaps = 107/498 (21%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           +F  +S++  +  NS+I  Y  NG    AR+LF++M  RN+VS+N+MI G+     +   
Sbjct: 155 VFGLLSKEEYLR-NSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGI 213

Query: 97  RELFDKM----FRPDLFS-----------------------------------WALMITC 117
            ELF  M      PD F+                                   +  ++  
Sbjct: 214 LELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDM 273

Query: 118 YTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSM 177
           Y +  EL+ AR++FD  P ++DT  WN ++AGYAK+G    A  L + +P+++IVSWNS+
Sbjct: 274 YVKCNELKLARKVFD-GPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSL 332

Query: 178 LSGYTKNGEMHLASKFFEAMEERDV----------------------------------- 202
           +SGY +NG+       F  M   +V                                   
Sbjct: 333 ISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLT 392

Query: 203 ----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
                S + ++D Y +   ++ A+  F +IPE++V +W TM++G+A +G   +A  LF  
Sbjct: 393 KIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSV 452

Query: 259 MPIR---NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVRIAK 310
           M      N V + +++AA    G ++E  ++F  M +R  +      +  ++D   R  +
Sbjct: 453 MQAETKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGR 512

Query: 311 LDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMDEANQIF--------DKIGTHDVVCWN 361
           L +A  ++++MP + + +   A++S    ++ M+ A +          +K G + ++  N
Sbjct: 513 LLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEGGY-ILLSN 571

Query: 362 VMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
           V    YA CGR   + ++ R+++N   V     IAG + +  +D  V  F    K+    
Sbjct: 572 V----YATCGRWSYSDSI-REVMNSRGV---KKIAGCSSV-AVDGMVHDFTASNKQHPRW 622

Query: 422 SWNALISGFLQNEFHLDA 439
                I  FL NE  L+A
Sbjct: 623 MDICSILSFLTNEMRLEA 640



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 155/306 (50%), Gaps = 18/306 (5%)

Query: 6   KSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDA 65
           KSIG+    ++N    +    K   ++ A K+F    +K+TV++N++I+ YAK G +  A
Sbjct: 257 KSIGSSNLILYNA--LLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELA 314

Query: 66  RKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRK 121
             LF Q+P R++VSWNS+I+GY  N      + LF +MF    +PD  +   +I+     
Sbjct: 315 CDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEM 374

Query: 122 GELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSML 178
           G L++ R +  L   +  K +    +A++  Y K G+   A  + + +P K++ +W +M+
Sbjct: 375 GALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMI 434

Query: 179 SGYTKNGEMHLASKFFEAME---ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-----E 230
           +G+  +G  + A + F  M+   + + V++  +L        +D   K F  +      E
Sbjct: 435 TGFAFHGFGNKALELFSVMQAETKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIE 494

Query: 231 QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA-WNAMIAAYVQRGQIEEAARLFIE 289
             V  +  ++    R+GR+L+A  + ++MP+    + W A+++A      +E A R  +E
Sbjct: 495 PGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALME 554

Query: 290 MPERNP 295
           + +  P
Sbjct: 555 LLKLEP 560



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 164/387 (42%), Gaps = 89/387 (22%)

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFF--------- 225
           NS++  Y  NG    A + F+ M +R+VVS+N M+ G+ ++ ++    + F         
Sbjct: 167 NSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLE 226

Query: 226 ------------------------------QKIPEQNVVSWVTMLSGYARNGRMLEARRL 255
                                         + I   N++ +  +L  Y +   +  AR++
Sbjct: 227 PDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKV 286

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR 315
           FD    ++ V+WN +IA Y + G++E A  LF ++P R+ VSW ++I GY +       +
Sbjct: 287 FDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVK 346

Query: 316 RLLDQMPYKNIAAQTA----MISGYVQNKRMDE-------ANQIFDKIGTHDVVCWNVMI 364
            L  +M  +N+         +IS   +   +D+       A ++  KI   +    + +I
Sbjct: 347 CLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKI---EAFSGSALI 403

Query: 365 KGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
             Y +CG ++ A  +F Q+  KD+ TW TMI G+A           F   G +       
Sbjct: 404 DMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFA-----------FHGFGNK------- 445

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
                         AL++F +M  E K  D  T    L+AC+H   +  G +I   ++K 
Sbjct: 446 --------------ALELFSVMQAETKPND-VTFVSVLAACSHSGLVDEGLKIFS-SMKK 489

Query: 485 GYVNDLFVGN--SLITMYAKCGRIQNA 509
            Y  +  V +   L+ +  + GR+ +A
Sbjct: 490 RYSIEPGVEHYGCLVDLLCRSGRLLDA 516



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 75/157 (47%), Gaps = 8/157 (5%)

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGF-LQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
           ++ A+ +F       N   +N +I GF   NE    A  I+  M Q G   D  T    L
Sbjct: 81  LELAILLFNHFTPYPNLYIFNTMILGFPFSNE---KAFTIYRSMLQNGTYPDRQTFLYLL 137

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVN-DLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
                +A +   +QIH  A+  G ++ + ++ NSLI  Y   G  + A  LF +    +V
Sbjct: 138 QTTKFVAEV---KQIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNV 194

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           +S+N++I G+A  GN    ++LF +M   G+ PD  T
Sbjct: 195 VSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFT 231


>gi|357132191|ref|XP_003567715.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial-like [Brachypodium distachyon]
          Length = 656

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 204/594 (34%), Positives = 316/594 (53%), Gaps = 25/594 (4%)

Query: 127 ARELFDLLP-NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
           A  LFD +P    D A  N ++A  A+ G+ + AK++L  MP ++ VS+ ++L+   + G
Sbjct: 64  AHHLFDEIPLALRDAAAHNTLLAALARGGHLDHAKRMLAEMPQRDTVSFTTVLTALARAG 123

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFF--------QKIPEQNVVSWV 237
               A   F  M  +DV    + L G +     D A            Q+  +  V+   
Sbjct: 124 HAEDAMAVFRGMLAQDVPPNEVTLAGVITALARDWAPAPLGMVHGVSVQRGLDGFVIVAT 183

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
            ++  YA   ++  AR +F+ MP +N V WNAM+  YV+ G I+ AA +F  +PER+ VS
Sbjct: 184 NLVHAYAAAAQVGFARAVFEWMPDKNTVTWNAMLNGYVKAGAIDMAAEMFERIPERDVVS 243

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYK-----NIAAQTAMISGYVQNKRMDEANQIF--- 349
           W  MIDGY+R   + EA R    M  +     N+A          ++  + E  Q+    
Sbjct: 244 WLVMIDGYIRADCISEALRTYVAMMAEVDTRGNVALLVDFQKACARHAAVLEGQQLHTVI 303

Query: 350 --DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDA 407
             D   TH  V    +I  Y  C  +D A   F+      I +WN  +AG  +   M +A
Sbjct: 304 LKDGFDTHLFV-QATLIHFYGSCDLLDLAKMQFKLSDKSHIASWNAFMAGIVRKNLMHEA 362

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
            ++F+ M   ++T+SW+ L+SG++Q+     AL++F LM   G K +H TLA  LSA A+
Sbjct: 363 RQLFDNM-PEKDTISWSTLLSGYVQSGHSDMALQLFCLMLGAGVKPNHITLASTLSAVAN 421

Query: 468 LAALQLGRQIHHLAI-KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA-DPVDVIS-W 524
              L+ GR IH   I KS ++ D  +   LI MYAKCG + +A LLF    + +  +S W
Sbjct: 422 SGTLEQGRWIHDYIISKSIHLTDNLIAG-LIDMYAKCGSVADAVLLFNHVKEKLSSLSPW 480

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           N++I   AI+G+A  +++LF ++    + P+ +T+IGVL+AC H G+V  G   FE M  
Sbjct: 481 NAMICSLAIHGHAHMSLELFSQLQSSNIKPNSITYIGVLNACCHAGMVTEGKHHFESMRR 540

Query: 585 VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
            Y I P ++HY CM+DLL RAG L+EA  ++K M +K +  IWG++L A R H N+ LG 
Sbjct: 541 EYGIPPTIKHYGCMVDLLGRAGYLEEAERLIKTMPVKSDVVIWGSILAAARSHGNVALGE 600

Query: 645 IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWI 698
            A E+L++L+P   +    L N++A+AGRW+ V  VR  +     ++  G S +
Sbjct: 601 KAAEELAKLDPNHGASKVALCNIYADAGRWNNVSVVRKELRYENLERLSGSSGV 654



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 138/579 (23%), Positives = 251/579 (43%), Gaps = 117/579 (20%)

Query: 41  MSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF 100
           ++ ++   +N++++A A+ G ++ A+++  +MPQR+ VS+ +++         ++A  +F
Sbjct: 73  LALRDAAAHNTLLAALARGGHLDHAKRMLAEMPQRDTVSFTTVLTALARAGHAEDAMAVF 132

Query: 101 DKMFR----PDLFSWALMITCYTRK-----------GELEKARELFDLLPNKEDTACWNA 145
             M      P+  + A +IT   R              +++  + F ++           
Sbjct: 133 RGMLAQDVPPNEVTLAGVITALARDWAPAPLGMVHGVSVQRGLDGFVIVATN-------- 184

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW 205
           +V  YA       A+ + + MP KN V+WN+ML+GY K G + +A++ FE + ERDVVSW
Sbjct: 185 LVHAYAAAAQVGFARAVFEWMPDKNTVTWNAMLNGYVKAGAIDMAAEMFERIPERDVVSW 244

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQ-----NVVSWVTMLSGYARNGRMLEARRL----- 255
            +M+DGY+  D +  A + +  +  +     NV   V      AR+  +LE ++L     
Sbjct: 245 LVMIDGYIRADCISEALRTYVAMMAEVDTRGNVALLVDFQKACARHAAVLEGQQLHTVIL 304

Query: 256 ---FD----------------------QMPIR-----NVVAWNAMIAAYVQRGQIEEAAR 285
              FD                      +M  +     ++ +WNA +A  V++  + EA +
Sbjct: 305 KDGFDTHLFVQATLIHFYGSCDLLDLAKMQFKLSDKSHIASWNAFMAGIVRKNLMHEARQ 364

Query: 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM------PYKNIAAQTAMISGYVQN 339
           LF  MPE++ +SW+T++ GYV+    D A +L   M      P     A T  +S    +
Sbjct: 365 LFDNMPEKDTISWSTLLSGYVQSGHSDMALQLFCLMLGAGVKPNHITLAST--LSAVANS 422

Query: 340 KRMDEANQIFDKIGTHDVVCWNVMIKG----YAQCGRMDEAINLFRQMVNK--DIVTWNT 393
             +++   I D I +  +   + +I G    YA+CG + +A+ LF  +  K   +  WN 
Sbjct: 423 GTLEQGRWIHDYIISKSIHLTDNLIAGLIDMYAKCGSVADAVLLFNHVKEKLSSLSPWNA 482

Query: 394 MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA 453
           MI   A                               +    H+ +L++F  +     K 
Sbjct: 483 MICSLA-------------------------------IHGHAHM-SLELFSQLQSSNIKP 510

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAI---KSGYVNDLFVGNSLITMYAKCGRIQNAE 510
           +  T    L+AC H   +  G+  HH      + G    +     ++ +  + G ++ AE
Sbjct: 511 NSITYIGVLNACCHAGMVTEGK--HHFESMRREYGIPPTIKHYGCMVDLLGRAGYLEEAE 568

Query: 511 LLFKDADPV--DVISWNSLIAGYAINGNATEAIKLFEEM 547
            L K   PV  DV+ W S++A    +GN     K  EE+
Sbjct: 569 RLIKTM-PVKSDVVIWGSILAAARSHGNVALGEKAAEEL 606



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 109/459 (23%), Positives = 188/459 (40%), Gaps = 84/459 (18%)

Query: 14  YVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP 73
           +V      +     + +V  A  +F  M  KNTVT+N+M++ Y K G ++ A ++FE++P
Sbjct: 178 FVIVATNLVHAYAAAAQVGFARAVFEWMPDKNTVTWNAMLNGYVKAGAIDMAAEMFERIP 237

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKM------------------------------ 103
           +R++VSW  MI GY+  D + EA   +  M                              
Sbjct: 238 ERDVVSWLVMIDGYIRADCISEALRTYVAMMAEVDTRGNVALLVDFQKACARHAAVLEGQ 297

Query: 104 ----------FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKI 153
                     F   LF  A +I  Y     L+ A+  F  L +K   A WNA +AG  + 
Sbjct: 298 QLHTVILKDGFDTHLFVQATLIHFYGSCDLLDLAKMQFK-LSDKSHIASWNAFMAGIVRK 356

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV 213
              +EA++L D MP K+ +SW+++LSGY ++G   +A + F            LML   V
Sbjct: 357 NLMHEARQLFDNMPEKDTISWSTLLSGYVQSGHSDMALQLF-----------CLMLGAGV 405

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
                           + N ++  + LS  A +G + + R + D +  +++   + +IA 
Sbjct: 406 ----------------KPNHITLASTLSAVANSGTLEQGRWIHDYIISKSIHLTDNLIAG 449

Query: 274 ----YVQRGQIEEAARLFIEMPER--NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
               Y + G + +A  LF  + E+  +   W  MI           +  L  Q+   NI 
Sbjct: 450 LIDMYAKCGSVADAVLLFNHVKEKLSSLSPWNAMICSLAIHGHAHMSLELFSQLQSSNIK 509

Query: 328 AQTAMISGYV----QNKRMDEANQIFDKI----GTHDVV-CWNVMIKGYAQCGRMDEAIN 378
             +    G +        + E    F+ +    G    +  +  M+    + G ++EA  
Sbjct: 510 PNSITYIGVLNACCHAGMVTEGKHHFESMRREYGIPPTIKHYGCMVDLLGRAGYLEEAER 569

Query: 379 LFRQM-VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
           L + M V  D+V W +++A       +    K  EE+ K
Sbjct: 570 LIKTMPVKSDVVIWGSILAAARSHGNVALGEKAAEELAK 608



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/349 (20%), Positives = 164/349 (46%), Gaps = 25/349 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           +++F Q   I   G    ++ A   F    + +  ++N+ ++   +   +++AR+LF+ M
Sbjct: 310 THLFVQATLIHFYGSCDLLDLAKMQFKLSDKSHIASWNAFMAGIVRKNLMHEARQLFDNM 369

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKAR 128
           P+++ +SW+++++GY+ +     A +LF  M     +P+  + A  ++     G LE+ R
Sbjct: 370 PEKDTISWSTLLSGYVQSGHSDMALQLFCLMLGAGVKPNHITLASTLSAVANSGTLEQGR 429

Query: 129 ELFDLLPNKEDTACWNAMVAG----YAKIGNYNEAKKLLDAMPSK--NIVSWNSMLSGYT 182
            + D + +K      N ++AG    YAK G+  +A  L + +  K  ++  WN+M+    
Sbjct: 430 WIHDYIISKSIHLTDN-LIAGLIDMYAKCGSVADAVLLFNHVKEKLSSLSPWNAMICSLA 488

Query: 183 KNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQ-----NV 233
            +G  H++ + F  ++  ++    +++  +L+       +      F+ +  +      +
Sbjct: 489 IHGHAHMSLELFSQLQSSNIKPNSITYIGVLNACCHAGMVTEGKHHFESMRREYGIPPTI 548

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIE 289
             +  M+    R G + EA RL   MP++ +VV W +++AA    G +   E+AA    +
Sbjct: 549 KHYGCMVDLLGRAGYLEEAERLIKTMPVKSDVVIWGSILAAARSHGNVALGEKAAEELAK 608

Query: 290 MPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
           +   +  S   + + Y    + +    +  ++ Y+N+   +   SG VQ
Sbjct: 609 LDPNHGASKVALCNIYADAGRWNNVSVVRKELRYENLERLSGS-SGVVQ 656



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 10/120 (8%)

Query: 469 AALQLGRQIHHLAIKSG-YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV-----DVI 522
           A L+ G Q+H LA KSG  V++LFV NSL+  Y++        L     D +     D  
Sbjct: 20  ARLRHGEQLHALAAKSGLLVSNLFVRNSLLAFYSRLPSSHAPALAHHLFDEIPLALRDAA 79

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           + N+L+A  A  G+   A ++  EM       D V+F  VL+A +  G  +  + +F  M
Sbjct: 80  AHNTLLAALARGGHLDHAKRMLAEMPQR----DTVSFTTVLTALARAGHAEDAMAVFRGM 135


>gi|334184919|ref|NP_182060.2| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
 gi|218546767|sp|O22137.2|PP202_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g45350, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 4; Flags: Precursor
 gi|330255448|gb|AEC10542.1| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
          Length = 613

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 170/445 (38%), Positives = 268/445 (60%), Gaps = 5/445 (1%)

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY--KN 325
           N +I  Y++ G +  + ++F  MP+R+ VS+ +MIDGYV+   +  AR L D MP   KN
Sbjct: 160 NCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKN 219

Query: 326 IAAQTAMISGYVQNKR-MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
           + +  +MISGY Q    +D A+++F  +   D++ WN MI GY + GR+++A  LF  M 
Sbjct: 220 LISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMP 279

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
            +D+VTW TMI GYA++  +  A  +F++M   R+ V++N++++G++QN++H++AL+IF 
Sbjct: 280 RRDVVTWATMIDGYAKLGFVHHAKTLFDQM-PHRDVVAYNSMMAGYVQNKYHMEALEIFS 338

Query: 445 LMTQEGKK-ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
            M +E     D +TL   L A A L  L     +H   ++  +     +G +LI MY+KC
Sbjct: 339 DMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKC 398

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
           G IQ+A L+F+  +   +  WN++I G AI+G    A  +  ++    + PD +TF+GVL
Sbjct: 399 GSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVL 458

Query: 564 SACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPN 623
           +ACSH GLV  GL  FE M   + IEP ++HY CM+D+LSR+G ++ A  +++ M ++PN
Sbjct: 459 NACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPN 518

Query: 624 AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVS 683
             IW T L AC  H+  + G +  + L        S Y LLSNM+A  G W +V +VR  
Sbjct: 519 DVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYASFGMWKDVRRVRTM 578

Query: 684 MEGSGAQKQPGCSWIEVKNQIHTFL 708
           M+    +K PGCSWIE+  ++H F 
Sbjct: 579 MKERKIEKIPGCSWIELDGRVHEFF 603



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 131/475 (27%), Positives = 239/475 (50%), Gaps = 61/475 (12%)

Query: 80  WNSMIAGYLHNDKVKEARELF----DKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           WN++I  + H    ++A  L     +     D FS +L++   +R G ++   ++   L 
Sbjct: 89  WNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGFL- 147

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
             + T  W+                         ++   N ++  Y K G + L+ + F+
Sbjct: 148 --KKTGLWS-------------------------DLFLQNCLIGLYLKCGCLGLSRQMFD 180

Query: 196 AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ--NVVSWVTMLSGYARNGRMLE-A 252
            M +RD VS+N M+DGYV+   + SA + F  +P +  N++SW +M+SGYA+    ++ A
Sbjct: 181 RMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIA 240

Query: 253 RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLD 312
            +LF  MP +++++WN+MI  YV+ G+IE+A  LF  MP R+ V+W TMIDGY ++  + 
Sbjct: 241 SKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVH 300

Query: 313 EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI--GTH---DVVCWNVMIKGY 367
            A+ L DQMP++++ A  +M++GYVQNK   EA +IF  +   +H   D     +++   
Sbjct: 301 HAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAI 360

Query: 368 AQCGRMDEAINLFRQMVNKDIVTWN----TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
           AQ GR+ +AI++   +V K           +I  Y++   +  A+ +FE + + ++   W
Sbjct: 361 AQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGI-ENKSIDHW 419

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH-------LAALQLGRQ 476
           NA+I G   +     A  + + + +   K D  T    L+AC+H       L   +L R+
Sbjct: 420 NAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRR 479

Query: 477 IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD--ADPVDVISWNSLIA 529
            H +  +  +         ++ + ++ G I+ A+ L ++   +P DVI W + + 
Sbjct: 480 KHKIEPRLQHY------GCMVDILSRSGSIELAKNLIEEMPVEPNDVI-WRTFLT 527



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/290 (34%), Positives = 157/290 (54%), Gaps = 13/290 (4%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F QN  I    K G +  + ++F +M ++++V+YNSMI  Y K G +  AR+LF+ M
Sbjct: 154 SDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLM 213

Query: 73  P--QRNLVSWNSMIAGYLH-NDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARE 129
           P   +NL+SWNSMI+GY   +D V  A +LF  M   DL SW  MI  Y + G +E A+ 
Sbjct: 214 PMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKG 273

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           LFD++P + D   W  M+ GYAK+G  + AK L D MP +++V++NSM++GY +N     
Sbjct: 274 LFDVMP-RRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHME 332

Query: 190 ASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV----SWVTML 240
           A + F  ME+      D  +  ++L    +L  L  A      I E+         V ++
Sbjct: 333 ALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALI 392

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
             Y++ G +  A  +F+ +  +++  WNAMI      G  E A  + +++
Sbjct: 393 DMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQI 442



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/267 (33%), Positives = 145/267 (54%), Gaps = 13/267 (4%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFD--KMFRPD 107
           N +I  Y K G +  +R++F++MP+R+ VS+NSMI GY+    +  ARELFD   M   +
Sbjct: 160 NCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKN 219

Query: 108 LFSWALMITCYTRKGE-LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           L SW  MI+ Y +  + ++ A +LF  +P K D   WN+M+ GY K G   +AK L D M
Sbjct: 220 LISWNSMISGYAQTSDGVDIASKLFADMPEK-DLISWNSMIDGYVKHGRIEDAKGLFDVM 278

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
           P +++V+W +M+ GY K G +H A   F+ M  RDVV++N M+ GYV+      A + F 
Sbjct: 279 PRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFS 338

Query: 227 KIPEQNVV-----SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN----AMIAAYVQR 277
            + +++ +     + V +L   A+ GR+ +A  +   +  +          A+I  Y + 
Sbjct: 339 DMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKC 398

Query: 278 GQIEEAARLFIEMPERNPVSWTTMIDG 304
           G I+ A  +F  +  ++   W  MI G
Sbjct: 399 GSIQHAMLVFEGIENKSIDHWNAMIGG 425



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 146/296 (49%), Gaps = 24/296 (8%)

Query: 28  SGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGY 87
           S  V+ A K+F+ M +K+ +++NSMI  Y K+GR+ DA+ LF+ MP+R++V+W +MI GY
Sbjct: 234 SDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGY 293

Query: 88  LHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD-------LLPNKEDT 140
                V  A+ LFD+M   D+ ++  M+  Y +     +A E+F        LLP   D 
Sbjct: 294 AKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLP---DD 350

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN----SMLSGYTKNGEMHLASKFFEA 196
                ++   A++G  ++A  +   +  K          +++  Y+K G +  A   FE 
Sbjct: 351 TTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEG 410

Query: 197 MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEA 252
           +E + +  WN M+ G       +SA+    +I   ++    +++V +L+  + +G + E 
Sbjct: 411 IENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEG 470

Query: 253 RRLFDQMPIRNVVA-----WNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMI 302
              F+ M  ++ +      +  M+    + G IE A  L  EMP E N V W T +
Sbjct: 471 LLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFL 526



 Score = 76.3 bits (186), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 105/218 (48%), Gaps = 9/218 (4%)

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
           G+  +   WNA+I      +    AL +  LM + G   D  +L+  L AC+ L  ++ G
Sbjct: 81  GEVEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGG 140

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
            QIH    K+G  +DLF+ N LI +Y KCG +  +  +F      D +S+NS+I GY   
Sbjct: 141 MQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKC 200

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG-LVDGGLKLFECMTEVYAIEPLVE 593
           G    A +LF+ M ME    + +++  ++S  +     VD   KLF  M E   I     
Sbjct: 201 GLIVSARELFDLMPME--MKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLIS---- 254

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
            +  MID   + GR+++A  +   M  + +   W T++
Sbjct: 255 -WNSMIDGYVKHGRIEDAKGLFDVMP-RRDVVTWATMI 290



 Score = 42.4 bits (98), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 16/178 (8%)

Query: 456 STLACALSACAH-LAALQLG---RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL 511
           ST+ C++S+  H L + +      QIH   IK+G + +  +   ++  +A   R   A+ 
Sbjct: 6   STMECSISSTIHVLGSCKTSDDVNQIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADF 65

Query: 512 L-----------FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
                       F   +  D   WN++I  ++   +  +A+ L   M+  GV+ D  +  
Sbjct: 66  ARCVFHEYHVCSFSFGEVEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLS 125

Query: 561 GVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
            VL ACS +G V GG+++   + +      L     C+I L  + G L  + +M   M
Sbjct: 126 LVLKACSRLGFVKGGMQIHGFLKKTGLWSDLFLQ-NCLIGLYLKCGCLGLSRQMFDRM 182


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 206/673 (30%), Positives = 345/673 (51%), Gaps = 77/673 (11%)

Query: 123 ELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYT 182
           E+ K     DL  N       N ++  Y K  +  +A KL D MP +N VS+ +++ GY+
Sbjct: 69  EIIKKGNCLDLFAN-------NILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYS 121

Query: 183 K--------------NGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI 228
           +               GE H  + F  +   + +VS      G+       S      K+
Sbjct: 122 QCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGF-------SVHACVYKL 174

Query: 229 P-EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF 287
             + +      ++  Y+  G    AR++FD +  +++V+W  M+A YV+    EE+ +LF
Sbjct: 175 GFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLF 234

Query: 288 IEMP----ERNPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQN 339
             M     + N  ++ +++   V +   +  + +          + +     +I  Y+++
Sbjct: 235 SRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKS 294

Query: 340 KRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM---------------- 383
             +D+A Q+F+++   DV+ W+ MI  YAQ  + +EAI +F +M                
Sbjct: 295 GDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLL 354

Query: 384 -----------------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
                                  ++ ++   N ++  YA+  +M++++++F E       
Sbjct: 355 QACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSE-SPNCTD 413

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
           VSWN +I G++Q      AL +F  M +   +    T +  L ACA +AAL+ G QIH L
Sbjct: 414 VSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSL 473

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEA 540
           ++K+ Y  +  VGN+LI MYAKCG I++A L+F      D +SWN++I+GY+++G   EA
Sbjct: 474 SVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEA 533

Query: 541 IKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMID 600
           +K FE M+     PD VTF+G+LSACS+ GL+D G   F+ M E Y IEP  EHY CM+ 
Sbjct: 534 LKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVW 593

Query: 601 LLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSC 660
           LL R+G LD+A ++V  +  +P+  +W  LL AC +H +++LGRI+ +++ E+EP+  + 
Sbjct: 594 LLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEAT 653

Query: 661 YALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           + LLSN++A A RW  V  +R SM+  G +K+PG SWIE + ++H F  GD     T  I
Sbjct: 654 HVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTSHPDTKLI 713

Query: 721 CNTLKTLAAQIRN 733
              L+ L  + RN
Sbjct: 714 NGMLEWLNMKARN 726



 Score =  188 bits (478), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 138/530 (26%), Positives = 262/530 (49%), Gaps = 27/530 (5%)

Query: 159 AKKLLDAMPSKNIVSWNSMLSGYTKNGEM----HLASKFFEAMEERDVVSWNLMLDGYVE 214
           A++   + P  N   + S+L    +NG+     +L  +  +     D+ + N++L+ YV+
Sbjct: 32  AQRTSHSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVK 91

Query: 215 LDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM--------PIRNVVA 266
            D L  A K F ++P++N VS+VT++ GY++  R  EA  LF ++        P      
Sbjct: 92  YDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTV 151

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
              +++A   +      A ++    + +    T +ID Y      + AR++ D + YK++
Sbjct: 152 LKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDM 211

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL------- 379
            + T M++ YV+N+  +E+ ++F ++        N       +     E  N+       
Sbjct: 212 VSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGC 271

Query: 380 -FRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
            F+    +++     +I  Y +   +DDA+++FEEM K  + + W+ +I+ + Q+E   +
Sbjct: 272 AFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPK-DDVIPWSFMIARYAQSEQSEE 330

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
           A+++F  M +     +  TLA  L ACA L  LQLG QIH   +K G   ++FV N+L+ 
Sbjct: 331 AIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMD 390

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           MYAKCGR++N+  LF ++     +SWN++I GY   GN  +A+ LF++M+   V    VT
Sbjct: 391 MYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVT 450

Query: 559 FIGVLSACSHVGLVDGGLKLFE-CMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKG 617
           +  VL AC+ +  ++ G ++    +  +Y    +V +   +ID+ ++ G + +A  +V  
Sbjct: 451 YSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGN--ALIDMYAKCGNIKDA-RLVFD 507

Query: 618 MKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL--SELEPQKTSCYALLS 665
           M  + +   W  ++    +H          E +  +E +P K +   +LS
Sbjct: 508 MLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILS 557



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 124/533 (23%), Positives = 222/533 (41%), Gaps = 108/533 (20%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQR----NLVSWNSMIAGYLHNDKVKEARELF 100
           NT  Y S++ +  +NG     + L  ++ ++    +L + N ++  Y+  D + +A +LF
Sbjct: 43  NTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLF 102

Query: 101 DKMFRPDLFSWALMITCYTRKGELEKARELF--------DLLPNKEDTACWNAMVAGYAK 152
           D+M   +  S+  +I  Y++     +A  LF        +L P    T     + A +AK
Sbjct: 103 DEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAK 162

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY 212
           +G    A        S   V   +++  Y+  G    A + F+A+E +D+VSW  M+  Y
Sbjct: 163 LGFSVHACVYKLGFDSDAFVG-TALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACY 221

Query: 213 VELDDLDSAWKFFQKI------PE---------------------------------QNV 233
           VE +  + + K F ++      P                                  + +
Sbjct: 222 VENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEEL 281

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE- 292
              V ++  Y ++G + +A ++F++MP  +V+ W+ MIA Y Q  Q EEA  +F  M   
Sbjct: 282 FVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRG 341

Query: 293 ---RNPVSWTTMIDGYVRIAKLDEARRL--------LDQMPYKNIAAQTAMISGYVQNKR 341
               N  +  +++     +  L    ++        LD     N+    A++  Y +  R
Sbjct: 342 LVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDM----NVFVSNALMDMYAKCGR 397

Query: 342 MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV----------------- 384
           M+ + Q+F +      V WN +I GY Q G  ++A+ LF+ M+                 
Sbjct: 398 MENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRA 457

Query: 385 ----------------------NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
                                 +K+ V  N +I  YA+   + DA  +F +M +  + VS
Sbjct: 458 CAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVF-DMLREHDQVS 516

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
           WNA+ISG+  +  + +ALK F  M +   K D  T    LSAC++   L  G+
Sbjct: 517 WNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQ 569



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 116/468 (24%), Positives = 204/468 (43%), Gaps = 74/468 (15%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP- 73
           +F  N  +    K   + +A K+F +M  +NTV++ ++I  Y++  R ++A  LF ++  
Sbjct: 79  LFANNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQG 138

Query: 74  ---QRNLVSWNSMIAGYLHNDKVKEARE----LFDKMFRPDLFSWALMITCYTRKGELEK 126
              + N   +++++   +  +  K        ++   F  D F    +I CY+  G  E 
Sbjct: 139 EGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAEC 198

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP----SKNIVSWNSMLSGYT 182
           AR++FD +  K D   W  MVA Y +   + E+ KL   M       N  ++ S+L    
Sbjct: 199 ARQVFDAIEYK-DMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACV 257

Query: 183 -----KNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV 237
                  G+      F  +  E   V   L +D Y++  D+D A + F+++P+ +V+ W 
Sbjct: 258 GLEVFNVGKAVHGCAFKTSYLEELFVGVEL-IDLYIKSGDVDDALQVFEEMPKDDVIPWS 316

Query: 238 TMLSGYARNGRMLEARRLFDQM------PIR----------------------------- 262
            M++ YA++ +  EA  +F +M      P +                             
Sbjct: 317 FMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKV 376

Query: 263 ----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
               NV   NA++  Y + G++E + +LF E P    VSW T+I GYV+    ++A  L 
Sbjct: 377 GLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILF 436

Query: 319 DQM----------PYKNIAAQTAMISGYVQNKRMD--EANQIFDKIGTHDVVCWNVMIKG 366
             M           Y ++    A I+      ++       I+DK    + V  N +I  
Sbjct: 437 KDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDK----NTVVGNALIDM 492

Query: 367 YAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           YA+CG + +A  +F  +   D V+WN MI+GY+      +A+K FE M
Sbjct: 493 YAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESM 540



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 122/545 (22%), Positives = 198/545 (36%), Gaps = 166/545 (30%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM------ 103
           N +++ Y K   + DA KLF++MP RN VS+ ++I GY    +  EA  LF ++      
Sbjct: 83  NILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHE 142

Query: 104 ---------------------------------FRPDLFSWALMITCYTRKGELEKAREL 130
                                            F  D F    +I CY+  G  E AR++
Sbjct: 143 LNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQV 202

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP----SKNIVSWNSMLSG------ 180
           FD +  K D   W  MVA Y +   + E+ KL   M       N  ++ S+L        
Sbjct: 203 FDAIEYK-DMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEV 261

Query: 181 -----------------------------YTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
                                        Y K+G++  A + FE M + DV+ W+ M+  
Sbjct: 262 FNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIAR 321

Query: 212 YVELDDLDSAWKFFQK------IPEQ---------------------------------N 232
           Y + +  + A + F +      +P Q                                 N
Sbjct: 322 YAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMN 381

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE 292
           V     ++  YA+ GRM  + +LF + P    V+WN +I  YVQ G  E+A  LF +M E
Sbjct: 382 VFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLE 441

Query: 293 ---------------------------------------RNPVSWTTMIDGYVRIAKLDE 313
                                                  +N V    +ID Y +   + +
Sbjct: 442 CQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKD 501

Query: 314 ARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI----GTHDVVCWNVMIKGYAQ 369
           AR + D +   +  +  AMISGY  +    EA + F+ +       D V +  ++   + 
Sbjct: 502 ARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSN 561

Query: 370 CGRMDEAINLFRQMVNK-DIVT----WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
            G +D     F+ MV + DI      +  M+    +   +D A K+  E+    + + W 
Sbjct: 562 AGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWR 621

Query: 425 ALISG 429
           AL+S 
Sbjct: 622 ALLSA 626



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 160/345 (46%), Gaps = 62/345 (17%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PD 107
           +I  Y K+G V+DA ++FE+MP+ +++ W+ MIA Y  +++ +EA E+F +M R    P+
Sbjct: 287 LIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPN 346

Query: 108 LFSWA-LMITC----------------------------------YTRKGELEKARELFD 132
            F+ A L+  C                                  Y + G +E + +LF 
Sbjct: 347 QFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFS 406

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNEA----KKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
             PN  D + WN ++ GY + GN  +A    K +L+       V+++S+L        + 
Sbjct: 407 ESPNCTDVS-WNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALE 465

Query: 189 LASKF----FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYA 244
             S+      + + +++ V  N ++D Y +  ++  A   F  + E + VSW  M+SGY+
Sbjct: 466 PGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYS 525

Query: 245 RNGRMLEARRLFDQM------PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS- 297
            +G   EA + F+ M      P +  V +  +++A    G ++     F  M E   +  
Sbjct: 526 VHGLYGEALKTFESMLETECKPDK--VTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEP 583

Query: 298 ----WTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISGYV 337
               +T M+    R   LD+A +L+ ++P++ ++    A++S  V
Sbjct: 584 CAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACV 628



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 125/254 (49%), Gaps = 17/254 (6%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           N    N+++  YAK GR+ ++ +LF + P    VSWN++I GY+     ++A  LF  M 
Sbjct: 381 NVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDML 440

Query: 105 RPDL----FSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYN 157
              +     +++ ++        LE   ++  L       ++T   NA++  YAK GN  
Sbjct: 441 ECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIK 500

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYV 213
           +A+ + D +   + VSWN+M+SGY+ +G    A K FE+M E     D V++  +L    
Sbjct: 501 DARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACS 560

Query: 214 ELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPIR-NVVAW 267
               LD    +F+ + E+  +      +  M+    R+G + +A +L  ++P   +V+ W
Sbjct: 561 NAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVW 620

Query: 268 NAMIAAYVQRGQIE 281
            A+++A V    +E
Sbjct: 621 RALLSACVIHNDVE 634



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 121/253 (47%), Gaps = 33/253 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM-- 72
           VF  N  +    K GR+E ++++FS+      V++N++I  Y + G    A  LF+ M  
Sbjct: 382 VFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLE 441

Query: 73  --PQRNLVSWNSMI---AGYLHNDKVKEARELFDK-MFRPDLFSWALMITCYTRKGELEK 126
              Q   V+++S++   AG    +   +   L  K ++  +      +I  Y + G ++ 
Sbjct: 442 CQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKD 501

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------PSKNIVSWNSMLSG 180
           AR +FD+L  + D   WNAM++GY+  G Y EA K  ++M      P K  V++  +LS 
Sbjct: 502 ARLVFDML-REHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDK--VTFVGILSA 558

Query: 181 YTKNGEMHLASKFFEAM-EERDV---------VSWNLMLDGYVELDDLDSAWKFFQKIP- 229
            +  G +     +F++M EE D+         + W L   G+     LD A K   +IP 
Sbjct: 559 CSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGH-----LDKAAKLVHEIPF 613

Query: 230 EQNVVSWVTMLSG 242
           E +V+ W  +LS 
Sbjct: 614 EPSVMVWRALLSA 626



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 85/159 (53%), Gaps = 15/159 (9%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
           KNTV  N++I  YAK G + DAR +F+ + + + VSWN+MI+GY  +    EA + F+ M
Sbjct: 481 KNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESM 540

Query: 104 F----RPDLFSWALMITCYTRKGELEKAR-------ELFDLLPNKEDTACWNAMVAGYAK 152
                +PD  ++  +++  +  G L++ +       E +D+ P  E   C   MV    +
Sbjct: 541 LETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTC---MVWLLGR 597

Query: 153 IGNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNGEMHLA 190
            G+ ++A KL+  +P   +++ W ++LS    + ++ L 
Sbjct: 598 SGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELG 636



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 10/148 (6%)

Query: 426 LISGFLQNEFHLDALKIFVLMTQE---GKKADHST-------LACALSACAHLAALQLGR 475
           L S  LQ+  H  +     ++TQ     ++  HS+           L +C        G+
Sbjct: 5   LRSKLLQHPNHCKSNTALCIITQRSFLAQRTSHSSPEFNTYIYGSLLQSCIRNGDCATGK 64

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
            +H   IK G   DLF  N L+  Y K   + +A  LF +    + +S+ +LI GY+   
Sbjct: 65  YLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCL 124

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVL 563
             +EAI LF  +  EG   +P  F  VL
Sbjct: 125 RFSEAIGLFSRLQGEGHELNPFVFSTVL 152


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 192/627 (30%), Positives = 326/627 (51%), Gaps = 56/627 (8%)

Query: 139  DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM- 197
            D  C N ++  Y K+G +  A ++ D +P +N+VS+ +++ G+   GE   AS  F+ + 
Sbjct: 464  DLFCANVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLR 523

Query: 198  -EERDVVSWNL--MLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSGYARNGRML 250
             E  +V  + L  +L   V +D L  AW           ++N      ++  Y+  G + 
Sbjct: 524  WEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVS 583

Query: 251  EARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYV 306
            +ARR+FD +  ++ VAW AM++ Y +    E   ++F +M     + NP + T+++   V
Sbjct: 584  DARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAV 643

Query: 307  RIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNV 362
             ++ +   + +    +  +         A++  Y +   +++A   F+ +   DV+ W++
Sbjct: 644  CLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSL 703

Query: 363  MIKGYAQCGRMDEAINLFRQMV-------------------------------------- 384
            MI  YAQC + ++A  LF +M+                                      
Sbjct: 704  MISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIG 763

Query: 385  -NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
               ++   N +I  YA+   M+ +++IF  + +  N VSWN +I G+ ++ F   AL +F
Sbjct: 764  HESELFVGNALIDLYAKCSDMESSLEIFSSL-RDVNEVSWNTIIVGYSKSGFGEAALSVF 822

Query: 444  VLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
              M      +   T +  L ACA  A++    Q+H L  KS + +D  V NSLI  YAKC
Sbjct: 823  REMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKC 882

Query: 504  GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
            G I++A  +F+     D++SWN++I+GYA++G A  A +LF+ M    +  + +TF+ +L
Sbjct: 883  GCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALL 942

Query: 564  SACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPN 623
            S C   GLV  GL LF+ M   + IEP +EHY C++ LL RAGRL++A   +  +   P+
Sbjct: 943  SVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDALNFIGDIPSAPS 1002

Query: 624  AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVS 683
            A +W  LL +C +H+N++LGR + EK+ E+EPQ  + Y LLSNM++ AG  D+V   R S
Sbjct: 1003 AMVWRALLSSCIVHKNVELGRFSAEKVLEIEPQDETTYVLLSNMYSAAGSLDQVAFFRKS 1062

Query: 684  MEGSGAQKQPGCSWIEVKNQIHTFLSG 710
            M   G +K+PG SW+E+K ++H F  G
Sbjct: 1063 MRNIGVRKEPGLSWVEIKGEVHAFSVG 1089



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 103/486 (21%), Positives = 203/486 (41%), Gaps = 79/486 (16%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM-- 72
           +F  N  +    K G    A ++F  + ++N V++ +++  +A  G   +A  LF+++  
Sbjct: 465 LFCANVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRW 524

Query: 73  -------------------------------------PQRNLVSWNSMIAGYLHNDKVKE 95
                                                  RN    +++I  Y     V +
Sbjct: 525 EGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSD 584

Query: 96  ARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD-------------LLPNKEDTAC 142
           AR +FD +   D  +W  M++CY+     E   ++F              L        C
Sbjct: 585 ARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVC 644

Query: 143 WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV 202
            +++V G  K  +    K L D    +++  + ++L  Y K G +  A   FE +   DV
Sbjct: 645 LSSVVLG--KGIHACSVKTLYDT--ERHV--YGALLDMYAKCGNIEDARLAFEMVTNDDV 698

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFDQ 258
           + W+LM+  Y + +  + A++ F ++   +V     S  ++L   A N  +L+  +    
Sbjct: 699 ILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACA-NMPLLDLGKQIHN 757

Query: 259 MPIR-----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDE 313
             I+      +   NA+I  Y +   +E +  +F  + + N VSW T+I GY +    + 
Sbjct: 758 HAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEA 817

Query: 314 ARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIG----THDVVCWNVMIK 365
           A  +  +M   ++ +     ++++        ++   Q+   I       D +  N +I 
Sbjct: 818 ALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLID 877

Query: 366 GYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK---RRNTVS 422
            YA+CG + +A  +F  +   D+V+WN +I+GYA   Q   A ++F+ M K   + N ++
Sbjct: 878 SYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDIT 937

Query: 423 WNALIS 428
           + AL+S
Sbjct: 938 FVALLS 943



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/440 (20%), Positives = 200/440 (45%), Gaps = 48/440 (10%)

Query: 29   GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM--------P------Q 74
            G V +A ++F  +  K+ V + +M+S Y++N    +  ++F +M        P       
Sbjct: 580  GVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVL 639

Query: 75   RNLVSWNSMIAGY-LHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDL 133
            R  V  +S++ G  +H   VK    L+D     +   +  ++  Y + G +E AR  F++
Sbjct: 640  RAAVCLSSVVLGKGIHACSVK---TLYDT----ERHVYGALLDMYAKCGNIEDARLAFEM 692

Query: 134  LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM----PSKNIVSWNSMLSGYTKNGEMHL 189
            + N +D   W+ M++ YA+     +A +L   M     S N  S +S+L        + L
Sbjct: 693  VTN-DDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDL 751

Query: 190  ASKF----FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR 245
              +      +   E ++   N ++D Y +  D++S+ + F  + + N VSW T++ GY++
Sbjct: 752  GKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSK 811

Query: 246  NGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARL--FIEMPERNP--VS 297
            +G    A  +F +M   +V    V +++++ A      I    ++   IE    N   + 
Sbjct: 812  SGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIV 871

Query: 298  WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV 357
              ++ID Y +   + +AR + + +   ++ +  A+ISGY  + +   A ++FD +  + +
Sbjct: 872  SNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSI 931

Query: 358  ----VCWNVMIKGYAQCGRMDEAINLFRQM-----VNKDIVTWNTMIAGYAQIRQMDDAV 408
                + +  ++      G + + ++LF  M     +   +  +  ++    +  +++DA+
Sbjct: 932  KANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDAL 991

Query: 409  KIFEEMGKRRNTVSWNALIS 428
                ++    + + W AL+S
Sbjct: 992  NFIGDIPSAPSAMVWRALLS 1011



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/417 (21%), Positives = 187/417 (44%), Gaps = 51/417 (12%)

Query: 4    SLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVN 63
            S+K++ +   +V+     +    K G +E+A   F  ++  + + ++ MIS YA+  +  
Sbjct: 658  SVKTLYDTERHVYG--ALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNE 715

Query: 64   DARKLFEQMPQRNLVSWNSM----------------IAGYLHNDKVKEARELFDKMFRPD 107
             A +LF +M  R+ VS N                  +   +HN  +K   E        +
Sbjct: 716  QAFELFIRM-MRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHE-------SE 767

Query: 108  LFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP 167
            LF    +I  Y +  ++E + E+F  L +  + + WN ++ GY+K G    A  +   M 
Sbjct: 768  LFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVS-WNTIIVGYSKSGFGEAALSVFREMR 826

Query: 168  SKNI----VSWNSMLSGYTKNGEMHLASKFFEAMEE----RDVVSWNLMLDGYVELDDLD 219
            + ++    V+++S+L        ++   +    +E+     D +  N ++D Y +   + 
Sbjct: 827  AASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIR 886

Query: 220  SAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYV 275
             A + F+ + E ++VSW  ++SGYA +G+   A+ LFD M   ++    + + A+++   
Sbjct: 887  DAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCG 946

Query: 276  QRGQIEEAARLFIEMP-----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA-AQ 329
              G + +   LF  M      E +   +T ++    R  +L++A   +  +P    A   
Sbjct: 947  STGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDALNFIGDIPSAPSAMVW 1006

Query: 330  TAMISGYVQNKRMD----EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
             A++S  + +K ++     A ++ + I   D   + ++   Y+  G +D+ +  FR+
Sbjct: 1007 RALLSSCIVHKNVELGRFSAEKVLE-IEPQDETTYVLLSNMYSAAGSLDQ-VAFFRK 1061



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 121/258 (46%), Gaps = 31/258 (12%)

Query: 3    ASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRV 62
            AS+ S     S V         +   G+V   I+        +T+  NS+I +YAK G +
Sbjct: 828  ASVPSTQVTYSSVLRACASTASINHVGQVHCLIE--KSTFNSDTIVSNSLIDSYAKCGCI 885

Query: 63   NDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITC 117
             DAR++FE + + +LVSWN++I+GY  + +   A+ELFD M +      D+   AL+  C
Sbjct: 886  RDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVC 945

Query: 118  YTRKGELEKARELFDLL-------PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS-K 169
             +  G + +   LFD +       P+ E   C   +V    + G  N+A   +  +PS  
Sbjct: 946  GS-TGLVSQGLSLFDSMRLDHGIEPSMEHYTC---IVRLLGRAGRLNDALNFIGDIPSAP 1001

Query: 170  NIVSWNSMLSGYTKNGEMHL----ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFF 225
            + + W ++LS    +  + L    A K  E +E +D  ++ L+ + Y     LD    FF
Sbjct: 1002 SAMVWRALLSSCIVHKNVELGRFSAEKVLE-IEPQDETTYVLLSNMYSAAGSLDQV-AFF 1059

Query: 226  QK------IPEQNVVSWV 237
            +K      + ++  +SWV
Sbjct: 1060 RKSMRNIGVRKEPGLSWV 1077


>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
          Length = 687

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 159/434 (36%), Positives = 264/434 (60%), Gaps = 4/434 (0%)

Query: 301 MIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW 360
           +ID Y +   L +A+++ D+M  +++ +    ++  V+   +D A  +FD++   D V W
Sbjct: 242 LIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKDTVSW 301

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
           N M+ GYA+ G  ++A  LF++M  +++V+W+T+++ Y +   M+ A  IF++M   +N 
Sbjct: 302 NTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKM-PAKNL 360

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
           V+W  ++S   Q     +A ++F  M     + D   +   L+ACA   +L LG++IH  
Sbjct: 361 VTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRH 420

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGNAT 538
             +        V N+L+ M+ KCG +  A+ +F D + V  D++SWN +I G+A++G   
Sbjct: 421 VRQRKLSRSTLVCNALMDMFCKCGCVNRADYIF-DTEIVEKDLVSWNIIIGGFAMHGPGE 479

Query: 539 EAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACM 598
           +A++LF +M  +G  PD VT I VLSAC+H+GLV+ G + F  M   Y I+P +EHY CM
Sbjct: 480 KALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCM 539

Query: 599 IDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKT 658
           +DLL R G + EA +M+K M  +PN  IWG+LL ACR+H+N++   +AV +LS L+P   
Sbjct: 540 VDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNVEYAELAVNELSNLQPSSA 599

Query: 659 SCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTA 718
             YA+LSN++AEAG+W ++ K RV M+G+G+QK  G SWIE+    H F  GD K   + 
Sbjct: 600 GNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWIELNEAFHEFTVGDRKHPESD 659

Query: 719 EICNTLKTLAAQIR 732
           +I + +  L++ ++
Sbjct: 660 QISDMIDRLSSHVK 673



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/404 (28%), Positives = 208/404 (51%), Gaps = 25/404 (6%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFE--------QMPQRNLVSWNSMIAGY 87
           ++  Q   ++  T + +I++YA   RV   R +F           P    +   +++  Y
Sbjct: 120 QLLKQGLHRDPHTASKLIASYALLRRVPACRCVFSAAVALPNSPFPSSTTLLTKTLLRAY 179

Query: 88  LHNDKVKEARELF-DKMFRP-DLFSWALMITCYTRKG--ELEKARELFDLLPNKEDTACW 143
             N     A  +F D   R    F+++ +I      G   +  A      L + EDT   
Sbjct: 180 ALNSLPHAALAVFLDVPLRQRGTFTYSFLIKALAAAGLTPVRGAHAHVVKLGSAEDTFVG 239

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           NA++  Y+K    ++AKK+ D M ++++VSWN+ ++   + GE+  A   F+ M E+D V
Sbjct: 240 NALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKDTV 299

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRN 263
           SWN MLDGY +  + + A++ FQ++P +NVVSW T++S Y + G M  AR +FD+MP +N
Sbjct: 300 SWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKN 359

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARRLLD 319
           +V W  M++A  Q+G +EEA RLF EM     E + ++  +++        L   +R+  
Sbjct: 360 LVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHR 419

Query: 320 QMPYKNIAAQT----AMISGYVQNKRMDEANQIFD-KIGTHDVVCWNVMIKGYAQCGRMD 374
            +  + ++  T    A++  + +   ++ A+ IFD +I   D+V WN++I G+A  G  +
Sbjct: 420 HVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGE 479

Query: 375 EAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           +A+ LF QM     + D VT   +++    +  +++  + F  M
Sbjct: 480 KALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANM 523



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 177/328 (53%), Gaps = 19/328 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            F  N  I    K+  + +A K+F +M+ ++ V++N+ ++A  + G V+ AR +F++MP+
Sbjct: 236 TFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPE 295

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           ++ VSWN+M+ GY    + ++A ELF +M   ++ SW+ +++ Y +KG++E AR +FD +
Sbjct: 296 KDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKM 355

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKL----LDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           P K +   W  MV+  A+ G   EA +L    +DA    ++++  S+L+   ++G + L 
Sbjct: 356 PAK-NLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALG 414

Query: 191 SKFFEAMEERDV----VSWNLMLDGYVELDDLDSA-WKFFQKIPEQNVVSWVTMLSGYAR 245
            +    + +R +    +  N ++D + +   ++ A + F  +I E+++VSW  ++ G+A 
Sbjct: 415 KRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAM 474

Query: 246 NGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS---- 297
           +G   +A  LF QM  +    + V    +++A    G +EE  R F  M     +     
Sbjct: 475 HGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIE 534

Query: 298 -WTTMIDGYVRIAKLDEARRLLDQMPYK 324
            +  M+D   R   + EA  ++ +MP++
Sbjct: 535 HYGCMVDLLGRGGLIKEAVDMIKRMPWE 562



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 162/308 (52%), Gaps = 18/308 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  +  + + G V+ A  +F +M +K+TV++N+M+  YAK G    A +LF++MP 
Sbjct: 267 VVSWNTAMAAMVRQGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPG 326

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN+VSW+++++ Y     ++ AR +FDKM   +L +W +M++   +KG +E+A  LF  +
Sbjct: 327 RNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEM 386

Query: 135 PNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMP----SKNIVSWNSMLSGYTKNGEM 187
            +     D     +++A  A+ G+    K++   +     S++ +  N+++  + K G +
Sbjct: 387 MDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCV 446

Query: 188 HLASKFFEA-MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSG 242
           + A   F+  + E+D+VSWN+++ G+      + A + F ++ +Q    + V+ + +LS 
Sbjct: 447 NRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSA 506

Query: 243 YARNGRMLEARRLFDQMPI-----RNVVAWNAMIAAYVQRGQIEEAARLFIEMP-ERNPV 296
               G + E RR F  M         +  +  M+    + G I+EA  +   MP E N V
Sbjct: 507 CTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEV 566

Query: 297 SWTTMIDG 304
            W +++  
Sbjct: 567 IWGSLLSA 574



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/369 (21%), Positives = 148/369 (40%), Gaps = 57/369 (15%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G  V + +  ++   K G +E A  IF +M  KN VT+  M+SA A+ G V +A +LF +
Sbjct: 326 GRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTE 385

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           M                            D     D+ +   ++      G L   + + 
Sbjct: 386 M---------------------------MDAAIELDVIAVVSILAACAESGSLALGKRIH 418

Query: 132 DLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDA-MPSKNIVSWNSMLSGYTKNGEM 187
             +  ++    T   NA++  + K G  N A  + D  +  K++VSWN ++ G+  +G  
Sbjct: 419 RHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPG 478

Query: 188 HLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIP-----EQNVVSWVT 238
             A + F  M+++    D V+   +L     +  ++   +FF  +      +  +  +  
Sbjct: 479 EKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGC 538

Query: 239 MLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
           M+    R G + EA  +  +MP   N V W ++++A      +E A     E+    P S
Sbjct: 539 MVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHKNVEYAELAVNELSNLQPSS 598

Query: 298 ---WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ-----------NKRMD 343
              +  + + Y    K  +  +   QM  K   +Q    S +++           +++  
Sbjct: 599 AGNYAVLSNIYAEAGKWSDMAKARVQM--KGTGSQKTAGSSWIELNEAFHEFTVGDRKHP 656

Query: 344 EANQIFDKI 352
           E++QI D I
Sbjct: 657 ESDQISDMI 665


>gi|326519006|dbj|BAJ92663.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 547

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 180/488 (36%), Positives = 263/488 (53%), Gaps = 45/488 (9%)

Query: 94  KEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN-----KEDTACWNAMVA 148
           +  R +FD     D  ++A +I  + R G+L +A  LF   P      + DTA    M+ 
Sbjct: 44  RSTRAVFDGTPHEDAVAYANLIDLHLRCGDLPRAEALFHAAPTAARGLRLDTA----MLD 99

Query: 149 GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLM 208
           GY K G  + A++L D MP K++ +W  ++SGY +   +  A + F+AM  RDVVSW  M
Sbjct: 100 GYFKAGRVDHARRLFDGMPVKSVGAWTRVVSGYCRARRVDEARRLFDAMPVRDVVSWTAM 159

Query: 209 LDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN 268
           L GY  +  +  A   F  +P ++ VSW  ML GYAR G + EAR +FDQMP RNVV W 
Sbjct: 160 LQGYARIGMMREARGLFDAMPARDFVSWTVMLQGYARRGMLREAREVFDQMPERNVVTWT 219

Query: 269 AMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA 328
            M+ AY  +G  +EA  LF +MP+RN  SW  MI G +R   +DEA RL ++MP +N  +
Sbjct: 220 VMVKAYADQGHFQEAMELFNKMPQRNLHSWNIMISGCLRAGNVDEAVRLFERMPDRNAVS 279

Query: 329 QTAMISGYVQNKRMDEANQIFDKIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD 387
            T M++G  QN R+  A + FD +    D   WN MI  YA  G+M+EA  LF  +  KD
Sbjct: 280 WTTMVTGLAQNGRVSMAREFFDGMPENRDTAAWNAMITAYANDGQMNEAQRLFDSIPAKD 339

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMT 447
           +V+WN +I GYA                                +N+   + + +F+LM 
Sbjct: 340 LVSWNAIIHGYA--------------------------------KNKHKGEVMGLFLLML 367

Query: 448 QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
           +     D +TL   L      + +++G QIH LA   G ++D  +GN+L+TMY++ G + 
Sbjct: 368 RSAVSPDRTTLISVLVTSE--STVEVG-QIHGLATTRGLLSDTSLGNALLTMYSRSGDLH 424

Query: 508 NAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
           +A  +FK     D I+W S++  +A +G A+ A++ F +M+  G  P   TFI  LSACS
Sbjct: 425 SAWQVFKMIQEKDPITWTSMMRAFANHGRASYALQAFAQMLQHGYKPSSTTFIAALSACS 484

Query: 568 HVGLVDGG 575
           H GLVD G
Sbjct: 485 HAGLVDKG 492



 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 148/432 (34%), Positives = 226/432 (52%), Gaps = 39/432 (9%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF 109
            +M+  Y K GRV+ AR+LF+ MP +++ +W  +++GY    +V EAR LFD M   D+ 
Sbjct: 95  TAMLDGYFKAGRVDHARRLFDGMPVKSVGAWTRVVSGYCRARRVDEARRLFDAMPVRDVV 154

Query: 110 SWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK 169
           SW  M+  Y R G + +AR LFD +P + D   W  M+ GYA+ G   EA+++ D MP +
Sbjct: 155 SWTAMLQGYARIGMMREARGLFDAMPAR-DFVSWTVMLQGYARRGMLREAREVFDQMPER 213

Query: 170 NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP 229
           N+V+W  M+  Y   G    A + F  M +R++ SWN+M+ G +   ++D A + F+++P
Sbjct: 214 NVVTWTVMVKAYADQGHFQEAMELFNKMPQRNLHSWNIMISGCLRAGNVDEAVRLFERMP 273

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQIEEAARLFI 288
           ++N VSW TM++G A+NGR+  AR  FD MP  R+  AWNAMI AY   GQ+ EA RLF 
Sbjct: 274 DRNAVSWTTMVTGLAQNGRVSMAREFFDGMPENRDTAAWNAMITAYANDGQMNEAQRLFD 333

Query: 289 EMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA-QTAMISGYVQNKRMDEANQ 347
            +P ++ VSW  +I GY +     E   L   M    ++  +T +IS  V ++   E  Q
Sbjct: 334 SIPAKDLVSWNAIIHGYAKNKHKGEVMGLFLLMLRSAVSPDRTTLISVLVTSESTVEVGQ 393

Query: 348 IFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQ 403
           I     T     D    N ++  Y++ G +  A  +F+ +  KD +TW +M+        
Sbjct: 394 IHGLATTRGLLSDTSLGNALLTMYSRSGDLHSAWQVFKMIQEKDPITWTSMM-------- 445

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS 463
                + F   G+     S+               AL+ F  M Q G K   +T   ALS
Sbjct: 446 -----RAFANHGR----ASY---------------ALQAFAQMLQHGYKPSSTTFIAALS 481

Query: 464 ACAHLAALQLGR 475
           AC+H   +  GR
Sbjct: 482 ACSHAGLVDKGR 493



 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 131/374 (35%), Positives = 207/374 (55%), Gaps = 27/374 (7%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K+GRV+ A ++F  M  K+   +  ++S Y +  RV++AR+LF+ MP R++VSW +M+ G
Sbjct: 103 KAGRVDHARRLFDGMPVKSVGAWTRVVSGYCRARRVDEARRLFDAMPVRDVVSWTAMLQG 162

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
           Y     ++EAR LFD M   D  SW +M+  Y R+G L +ARE+FD +P + +   W  M
Sbjct: 163 YARIGMMREARGLFDAMPARDFVSWTVMLQGYARRGMLREAREVFDQMPER-NVVTWTVM 221

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN 206
           V  YA  G++ EA +L + MP +N+ SWN M+SG  + G +  A + FE M +R+ VSW 
Sbjct: 222 VKAYADQGHFQEAMELFNKMPQRNLHSWNIMISGCLRAGNVDEAVRLFERMPDRNAVSWT 281

Query: 207 LMLDGYVELDDLDSAWKFFQKIPE-QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
            M+ G  +   +  A +FF  +PE ++  +W  M++ YA +G+M EA+RLFD +P +++V
Sbjct: 282 TMVTGLAQNGRVSMAREFFDGMPENRDTAAWNAMITAYANDGQMNEAQRLFDSIPAKDLV 341

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEM------PERNPVSWTTMIDGYV---------RIAK 310
           +WNA+I  Y +     E   LF+ M      P+R     TT+I   V         +I  
Sbjct: 342 SWNAIIHGYAKNKHKGEVMGLFLLMLRSAVSPDR-----TTLISVLVTSESTVEVGQIHG 396

Query: 311 LDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC 370
           L   R LL      N     A+++ Y ++  +  A Q+F  I   D + W  M++ +A  
Sbjct: 397 LATTRGLLSDTSLGN-----ALLTMYSRSGDLHSAWQVFKMIQEKDPITWTSMMRAFANH 451

Query: 371 GRMDEAINLFRQMV 384
           GR   A+  F QM+
Sbjct: 452 GRASYALQAFAQML 465



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 136/321 (42%), Gaps = 51/321 (15%)

Query: 315 RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT--HDVVCWNVMIKGYAQCGR 372
           R + D  P+++  A   +I  +++   +  A  +F    T    +     M+ GY + GR
Sbjct: 47  RAVFDGTPHEDAVAYANLIDLHLRCGDLPRAEALFHAAPTAARGLRLDTAMLDGYFKAGR 106

Query: 373 MDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
           +D A  LF  M  K +  W  +++GY + R++D+A ++F+ M   R+ VSW A++ G+ +
Sbjct: 107 VDHARRLFDGMPVKSVGAWTRVVSGYCRARRVDEARRLFDAM-PVRDVVSWTAMLQGYAR 165

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
                +A  +F  M                                          D   
Sbjct: 166 IGMMREARGLFDAMP---------------------------------------ARDFVS 186

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
              ++  YA+ G ++ A  +F      +V++W  ++  YA  G+  EA++LF +M    +
Sbjct: 187 WTVMLQGYARRGMLREAREVFDQMPERNVVTWTVMVKAYADQGHFQEAMELFNKMPQRNL 246

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
                ++  ++S C   G VD  ++LFE M +  A+      +  M+  L++ GR+  A 
Sbjct: 247 H----SWNIMISGCLRAGNVDEAVRLFERMPDRNAVS-----WTTMVTGLAQNGRVSMAR 297

Query: 613 EMVKGMKIKPNAGIWGTLLGA 633
           E   GM    +   W  ++ A
Sbjct: 298 EFFDGMPENRDTAAWNAMITA 318



 Score = 43.1 bits (100), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 34/56 (60%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           N  +T   +SG +  A ++F  + +K+ +T+ SM+ A+A +GR + A + F QM Q
Sbjct: 411 NALLTMYSRSGDLHSAWQVFKMIQEKDPITWTSMMRAFANHGRASYALQAFAQMLQ 466


>gi|356567222|ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Glycine max]
          Length = 887

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 223/805 (27%), Positives = 371/805 (46%), Gaps = 133/805 (16%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM------PQRNLVSW--NS 82
           V++     + ++  + + +NS+I AY++     +A K ++ M      P +   ++   +
Sbjct: 77  VQQCTLAPNSITNPSLILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKA 136

Query: 83  MIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTAC 142
                  ++ V   +++  +    D+F    ++  Y + G L+ AR++FD +P K D A 
Sbjct: 137 CTGALDFHEGVAIHQDIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGK-DVAS 195

Query: 143 WNAMVAGYAKIGNYNEA---------------------------KKLLDAMPSKNI---- 171
           WNAM++G ++  N  EA                            +L D    K+I    
Sbjct: 196 WNAMISGLSQSSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYV 255

Query: 172 -------VSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE---------- 214
                  V  NS++  Y+K GE+ LA + F+ M  +D +SW  M+ GYV           
Sbjct: 256 VRRCVFGVVSNSLIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQL 315

Query: 215 LDDLDSAWKFFQKIPEQN-----------------------------VVSWVTMLSGYAR 245
           LD++        KI   N                             +V    ++S YA+
Sbjct: 316 LDEMKRKHIKMNKISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAK 375

Query: 246 NGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGY 305
            G + +A+  F  +  R++V W+A ++A VQ G   EA  +F EM         T++   
Sbjct: 376 CGELKKAKEFFLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSL 435

Query: 306 VRIAKLDEARRLLDQMPY--------KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV 357
           V       + RL   M           +I+  T ++S Y + K    A  +F+++   DV
Sbjct: 436 VSACAEISSSRLGKMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFNRMHYKDV 495

Query: 358 VCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAG---------------- 397
           V WN +I G+ +CG    A+ +F ++    V  D  T  ++++                 
Sbjct: 496 VAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYLGICFHGN 555

Query: 398 -------------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
                              YA+   +  A  +F      ++ VSWN +I+G+L N    +
Sbjct: 556 IIKNGIESEMHVKVALIDMYAKCGSLCTAENLFHLNKHVKDEVSWNVMIAGYLHNGCANE 615

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
           A+  F  M  E  + +  T    L A ++L+ L+     H   I+ G+++   +GNSLI 
Sbjct: 616 AISTFNQMKLESVRPNLVTFVTILPAVSYLSILREAMAFHACIIRMGFISSTLIGNSLID 675

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           MYAK G++  +E  F + +    ISWN++++GYA++G    A+ LF  M    V  D V+
Sbjct: 676 MYAKSGQLSYSEKCFHEMENKGTISWNAMLSGYAMHGQGEVALALFSLMQETHVPVDSVS 735

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
           +I VLSAC H GL+  G  +F+ MTE + +EP +EHYACM+DLL  AG  DE   ++  M
Sbjct: 736 YISVLSACRHAGLIQEGRNIFQSMTEKHNLEPSMEHYACMVDLLGCAGLFDEVLCLIDKM 795

Query: 619 KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVE 678
             +P+A +WG LLGAC+MH N+KLG IA+  L +LEP+    Y +LS+++A+ GRW +  
Sbjct: 796 PTEPDAQVWGALLGACKMHSNVKLGEIALHHLLKLEPRNAVHYIVLSDIYAQCGRWIDAR 855

Query: 679 KVRVSMEGSGAQKQPGCSWIEVKNQ 703
           + R +M   G +K PG SW+    Q
Sbjct: 856 RTRSNMTDHGLKKNPGYSWVGAHKQ 880



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 141/569 (24%), Positives = 236/569 (41%), Gaps = 106/569 (18%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKN-------------------------- 45
           G  V + N  I+ L +S    EA++IF +M  +                           
Sbjct: 190 GKDVASWNAMISGLSQSSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCK 249

Query: 46  ------------TVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKV 93
                        V  NS+I  Y+K G V  A ++F+QM  ++ +SW +M+AGY+H+   
Sbjct: 250 SIHGYVVRRCVFGVVSNSLIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCY 309

Query: 94  KEARELFDKMFRPDL----FSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAM 146
            E  +L D+M R  +     S    +   T   +LEK +E+ +    L    D      +
Sbjct: 310 FEVLQLLDEMKRKHIKMNKISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPI 369

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN 206
           V+ YAK G   +AK+   ++  +++V W++ LS   + G    A   F+ M+   +    
Sbjct: 370 VSMYAKCGELKKAKEFFLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDK 429

Query: 207 LMLDGYVELDDLDSAWKFFQKIP--------EQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
            +L   V      S+ +  + +           ++    T++S Y R    + A  LF++
Sbjct: 430 TILSSLVSACAEISSSRLGKMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFNR 489

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLF--IEMPERNPVSWTTMIDGYVRIAKLDEAR- 315
           M  ++VVAWN +I  + + G    A  +F  +++    P S  TM+      A LD+   
Sbjct: 490 MHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDS-GTMVSLLSACALLDDLYL 548

Query: 316 ------RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH--DVVCWNVMIKGY 367
                  ++       +  + A+I  Y +   +  A  +F  +  H  D V WNVMI GY
Sbjct: 549 GICFHGNIIKNGIESEMHVKVALIDMYAKCGSLCTAENLF-HLNKHVKDEVSWNVMIAGY 607

Query: 368 AQCGRMDEAINLFRQM----VNKDIVTW-------------------------------- 391
              G  +EAI+ F QM    V  ++VT+                                
Sbjct: 608 LHNGCANEAISTFNQMKLESVRPNLVTFVTILPAVSYLSILREAMAFHACIIRMGFISST 667

Query: 392 ---NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
              N++I  YA+  Q+  + K F EM + + T+SWNA++SG+  +     AL +F LM +
Sbjct: 668 LIGNSLIDMYAKSGQLSYSEKCFHEM-ENKGTISWNAMLSGYAMHGQGEVALALFSLMQE 726

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQI 477
                D  +    LSAC H   +Q GR I
Sbjct: 727 THVPVDSVSYISVLSACRHAGLIQEGRNI 755



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 9/140 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  I    KSG++  + K F +M  K T+++N+M+S YA +G+   A  LF  M + ++ 
Sbjct: 671 NSLIDMYAKSGQLSYSEKCFHEMENKGTISWNAMLSGYAMHGQGEVALALFSLMQETHVP 730

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARE 129
              VS+ S+++   H   ++E R +F  M       P +  +A M+      G  ++   
Sbjct: 731 VDSVSYISVLSACRHAGLIQEGRNIFQSMTEKHNLEPSMEHYACMVDLLGCAGLFDEVLC 790

Query: 130 LFDLLPNKEDTACWNAMVAG 149
           L D +P + D   W A++  
Sbjct: 791 LIDKMPTEPDAQVWGALLGA 810


>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 199/647 (30%), Positives = 332/647 (51%), Gaps = 53/647 (8%)

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            D+    +++  Y+K G+   A+K+ D M  +N+V W +M+  YT+ GE  +A   +  M
Sbjct: 81  SDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIM 140

Query: 198 EERDV----VSWNLMLDGYVELDDLDSAWK-FFQKIPEQNVVSWVTMLSGYARNGRMLEA 252
             + +    V+   +L G +EL  L        Q     +V    +ML+ Y + GR+ +A
Sbjct: 141 RRQGIQPSSVTMLGLLSGVLELVHLQCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDA 200

Query: 253 RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP--------------------- 291
           + LF+ M  R+V++WN++++ Y Q G I E  +L I M                      
Sbjct: 201 QALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQ 260

Query: 292 ------------------ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMI 333
                             E++    T++I  Y++   ++ A R+ + M +K++ + TAMI
Sbjct: 261 SKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMI 320

Query: 334 SGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG-YAQCGRMDE-----AIN--LFRQMVN 385
           SG VQN   D A  +F ++    V+     I    A C  +       +++  + RQ + 
Sbjct: 321 SGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIK 380

Query: 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVL 445
            DI + N+++  YA+   ++ +  +F+ M  RR+ VSWNA++SG  QN     AL +F  
Sbjct: 381 LDIPSQNSLVTMYAKCGHLEQSCSVFDRM-SRRDIVSWNAIVSGHAQNGHLCKALLLFNE 439

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
           M +  ++ D  T+   L ACA + AL  G+ IH+   KS     + +  +L+ MY+KCG 
Sbjct: 440 MRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGD 499

Query: 506 IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565
           + +A+  F      D++SW+S+IAGY  +G    A++++ + +  G+ P+ V ++ +LSA
Sbjct: 500 LGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSA 559

Query: 566 CSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAG 625
           CSH GLVD GL  F  MT+ + IEP +EH AC++DLLSRAGR++EA+   K M  KP+  
Sbjct: 560 CSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMD 619

Query: 626 IWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685
           + G LL ACR   N++LG I   ++  L+P     Y  L++ +A   RWD V +V   M+
Sbjct: 620 VLGILLDACRTTGNVELGDIVAREIVILKPANAGNYVQLAHSYASMKRWDGVGEVWTQMK 679

Query: 686 GSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
               +K PG S+IE+   I TF +      +  EI + +  L  + R
Sbjct: 680 SLHLKKLPGWSFIELHGTITTFFTDHSSHPQFEEIIDRVLLLNKRRR 726



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 194/399 (48%), Gaps = 37/399 (9%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           NSM++ Y K GRV DA+ LFE M  R+++SWNS+++GY     ++E  +L  +M      
Sbjct: 185 NSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIE 244

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL 162
           PD  ++  +++    + +L   + +   +     ++D+    +++  Y K GN N A ++
Sbjct: 245 PDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRI 304

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLD---------GYV 213
            + M  K+++SW +M+SG  +N    +A   F  M +  V+     +          G  
Sbjct: 305 FEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSF 364

Query: 214 ELDDLDSAWKFFQK----IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNA 269
            L      +   Q+    IP QN  S VTM   YA+ G + ++  +FD+M  R++V+WNA
Sbjct: 365 PLGTSVHGYILRQRIKLDIPSQN--SLVTM---YAKCGHLEQSCSVFDRMSRRDIVSWNA 419

Query: 270 MIAAYVQRGQIEEAARLFIEM--PERNPVSWT--TMIDGYVRIAKLDEARRLLDQMPYKN 325
           +++ + Q G + +A  LF EM    + P S T  +++     I  L + + + + +    
Sbjct: 420 IVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSC 479

Query: 326 IAA----QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
           +       TA++  Y +   +  A + FD++   D+V W+ +I GY   G+ + A+ ++ 
Sbjct: 480 LGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYS 539

Query: 382 QMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
             ++  I    V + ++++  +    +D  +  F  M K
Sbjct: 540 DFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTK 578



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 97/437 (22%), Positives = 170/437 (38%), Gaps = 129/437 (29%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS V   N  +    K GRVE+A  +F  M  ++ +++NS++S YA+ G + +  +L  +
Sbjct: 178 GSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIR 237

Query: 72  M------PQR----NLVSW-----------------------------NSMIAGYLHNDK 92
           M      P +    +LVS                               S+I  YL    
Sbjct: 238 MKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGN 297

Query: 93  VKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF------DLLPN---------- 136
           V  A  +F+ M   D+ SW  MI+   +    + A  +F       ++P+          
Sbjct: 298 VNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAA 357

Query: 137 ----------------------KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSW 174
                                 K D    N++V  YAK G+  ++  + D M  ++IVSW
Sbjct: 358 CAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSW 417

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEER-------DVVS---------------W------- 205
           N+++SG+ +NG +  A   F  M +         VVS               W       
Sbjct: 418 NAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTK 477

Query: 206 ----------NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRL 255
                       ++D Y +  DL SA K F ++P+Q++VSW ++++GY  +G+   A R+
Sbjct: 478 SCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRM 537

Query: 256 FDQM------PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-----ERNPVSWTTMIDG 304
           +         P  N V + ++++A    G +++    F  M      E        ++D 
Sbjct: 538 YSDFLHTGIQP--NHVIYLSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDL 595

Query: 305 YVRIAKLDEARRLLDQM 321
             R  +++EA     +M
Sbjct: 596 LSRAGRVEEAYSFYKRM 612



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 141/305 (46%), Gaps = 20/305 (6%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           I  Q  + +  + NS+++ YAK G +  +  +F++M +R++VSWN++++G+  N  + +A
Sbjct: 374 ILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKA 433

Query: 97  RELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACW---NAMVAG 149
             LF++M     RPD  +   ++      G L + + + + +       C     A+V  
Sbjct: 434 LLLFNEMRKARQRPDSITVVSLLQACASIGALHQGKWIHNFVTKSCLGPCILIDTALVDM 493

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE----MHLASKFFEAMEERDVVSW 205
           Y+K G+   A+K  D MP +++VSW+S+++GY  +G+    + + S F     + + V +
Sbjct: 494 YSKCGDLGSAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIY 553

Query: 206 NLMLDGYVELDDLDSAWKFFQKIP-----EQNVVSWVTMLSGYARNGRMLEARRLFDQM- 259
             +L        +D    FF  +      E  +     ++   +R GR+ EA   + +M 
Sbjct: 554 LSILSACSHNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMF 613

Query: 260 PIRNVVAWNAMIAAYVQRGQIEEA---ARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
           P  ++     ++ A    G +E     AR  + +   N  ++  +   Y  + + D    
Sbjct: 614 PKPSMDVLGILLDACRTTGNVELGDIVAREIVILKPANAGNYVQLAHSYASMKRWDGVGE 673

Query: 317 LLDQM 321
           +  QM
Sbjct: 674 VWTQM 678



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 106/256 (41%), Gaps = 30/256 (11%)

Query: 420 TVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHH 479
           T S+NA+I+         D L  +  M       D  T    + AC  L     G   H 
Sbjct: 13  TKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQ 72

Query: 480 LAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATE 539
             I  GY +D ++  SLI  Y+K G  Q+A  +F   D  +V+ W ++I  Y   G    
Sbjct: 73  RVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDV 132

Query: 540 AIKLFEEMVMEGVAPDPVTFIGVLSA--------CSHVGLVDGG----LKLFECMTEVYA 587
           A  ++  M  +G+ P  VT +G+LS         C H  ++  G    + L   M  VY 
Sbjct: 133 AFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACVIQYGFGSDVALANSMLNVYC 192

Query: 588 IEPLVEHYACMIDLL---------------SRAGRLDEAFEMVKGMK---IKPNAGIWGT 629
               VE    + +L+               ++ G + E  +++  MK   I+P+   +G+
Sbjct: 193 KCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGS 252

Query: 630 LLGACRMHQNIKLGRI 645
           L+ A  M   + +G++
Sbjct: 253 LVSAAAMQSKLGVGKM 268


>gi|2583119|gb|AAB82628.1| hypothetical protein [Arabidopsis thaliana]
          Length = 606

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 170/445 (38%), Positives = 268/445 (60%), Gaps = 5/445 (1%)

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY--KN 325
           N +I  Y++ G +  + ++F  MP+R+ VS+ +MIDGYV+   +  AR L D MP   KN
Sbjct: 153 NCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKN 212

Query: 326 IAAQTAMISGYVQNKR-MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
           + +  +MISGY Q    +D A+++F  +   D++ WN MI GY + GR+++A  LF  M 
Sbjct: 213 LISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMP 272

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
            +D+VTW TMI GYA++  +  A  +F++M   R+ V++N++++G++QN++H++AL+IF 
Sbjct: 273 RRDVVTWATMIDGYAKLGFVHHAKTLFDQM-PHRDVVAYNSMMAGYVQNKYHMEALEIFS 331

Query: 445 LMTQEGKK-ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
            M +E     D +TL   L A A L  L     +H   ++  +     +G +LI MY+KC
Sbjct: 332 DMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKC 391

Query: 504 GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563
           G IQ+A L+F+  +   +  WN++I G AI+G    A  +  ++    + PD +TF+GVL
Sbjct: 392 GSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVL 451

Query: 564 SACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPN 623
           +ACSH GLV  GL  FE M   + IEP ++HY CM+D+LSR+G ++ A  +++ M ++PN
Sbjct: 452 NACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPN 511

Query: 624 AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVS 683
             IW T L AC  H+  + G +  + L        S Y LLSNM+A  G W +V +VR  
Sbjct: 512 DVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYASFGMWKDVRRVRTM 571

Query: 684 MEGSGAQKQPGCSWIEVKNQIHTFL 708
           M+    +K PGCSWIE+  ++H F 
Sbjct: 572 MKERKIEKIPGCSWIELDGRVHEFF 596



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 116/376 (30%), Positives = 206/376 (54%), Gaps = 29/376 (7%)

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ--N 232
           N ++  Y K G + L+ + F+ M +RD VS+N M+DGYV+   + SA + F  +P +  N
Sbjct: 153 NCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKN 212

Query: 233 VVSWVTMLSGYARNGRMLE-ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
           ++SW +M+SGYA+    ++ A +LF  MP +++++WN+MI  YV+ G+IE+A  LF  MP
Sbjct: 213 LISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMP 272

Query: 292 ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK 351
            R+ V+W TMIDGY ++  +  A+ L DQMP++++ A  +M++GYVQNK   EA +IF  
Sbjct: 273 RRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSD 332

Query: 352 I--GTH---DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWN----TMIAGYAQIR 402
           +   +H   D     +++   AQ GR+ +AI++   +V K           +I  Y++  
Sbjct: 333 MEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCG 392

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
            +  A+ +FE + + ++   WNA+I G   +     A  + + + +   K D  T    L
Sbjct: 393 SIQHAMLVFEGI-ENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVL 451

Query: 463 SACAH-------LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD 515
           +AC+H       L   +L R+ H +  +  +         ++ + ++ G I+ A+ L ++
Sbjct: 452 NACSHSGLVKEGLLCFELMRRKHKIEPRLQHY------GCMVDILSRSGSIELAKNLIEE 505

Query: 516 --ADPVDVISWNSLIA 529
              +P DVI W + + 
Sbjct: 506 MPVEPNDVI-WRTFLT 520



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/290 (34%), Positives = 157/290 (54%), Gaps = 13/290 (4%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F QN  I    K G +  + ++F +M ++++V+YNSMI  Y K G +  AR+LF+ M
Sbjct: 147 SDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLM 206

Query: 73  P--QRNLVSWNSMIAGYLH-NDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARE 129
           P   +NL+SWNSMI+GY   +D V  A +LF  M   DL SW  MI  Y + G +E A+ 
Sbjct: 207 PMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKG 266

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           LFD++P + D   W  M+ GYAK+G  + AK L D MP +++V++NSM++GY +N     
Sbjct: 267 LFDVMP-RRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHME 325

Query: 190 ASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV----SWVTML 240
           A + F  ME+      D  +  ++L    +L  L  A      I E+         V ++
Sbjct: 326 ALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALI 385

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
             Y++ G +  A  +F+ +  +++  WNAMI      G  E A  + +++
Sbjct: 386 DMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQI 435



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/267 (33%), Positives = 145/267 (54%), Gaps = 13/267 (4%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFD--KMFRPD 107
           N +I  Y K G +  +R++F++MP+R+ VS+NSMI GY+    +  ARELFD   M   +
Sbjct: 153 NCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELFDLMPMEMKN 212

Query: 108 LFSWALMITCYTRKGE-LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           L SW  MI+ Y +  + ++ A +LF  +P K D   WN+M+ GY K G   +AK L D M
Sbjct: 213 LISWNSMISGYAQTSDGVDIASKLFADMPEK-DLISWNSMIDGYVKHGRIEDAKGLFDVM 271

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
           P +++V+W +M+ GY K G +H A   F+ M  RDVV++N M+ GYV+      A + F 
Sbjct: 272 PRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFS 331

Query: 227 KIPEQNVV-----SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN----AMIAAYVQR 277
            + +++ +     + V +L   A+ GR+ +A  +   +  +          A+I  Y + 
Sbjct: 332 DMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKC 391

Query: 278 GQIEEAARLFIEMPERNPVSWTTMIDG 304
           G I+ A  +F  +  ++   W  MI G
Sbjct: 392 GSIQHAMLVFEGIENKSIDHWNAMIGG 418



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 146/296 (49%), Gaps = 24/296 (8%)

Query: 28  SGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGY 87
           S  V+ A K+F+ M +K+ +++NSMI  Y K+GR+ DA+ LF+ MP+R++V+W +MI GY
Sbjct: 227 SDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGY 286

Query: 88  LHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD-------LLPNKEDT 140
                V  A+ LFD+M   D+ ++  M+  Y +     +A E+F        LLP   D 
Sbjct: 287 AKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLP---DD 343

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN----SMLSGYTKNGEMHLASKFFEA 196
                ++   A++G  ++A  +   +  K          +++  Y+K G +  A   FE 
Sbjct: 344 TTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEG 403

Query: 197 MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEA 252
           +E + +  WN M+ G       +SA+    +I   ++    +++V +L+  + +G + E 
Sbjct: 404 IENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEG 463

Query: 253 RRLFDQMPIRNVVA-----WNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMI 302
              F+ M  ++ +      +  M+    + G IE A  L  EMP E N V W T +
Sbjct: 464 LLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFL 519



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 105/219 (47%), Gaps = 9/219 (4%)

Query: 414 MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQL 473
            G+  +   WNA+I      +    AL +  LM + G   D  +L+  L AC+ L  ++ 
Sbjct: 73  FGEVEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKG 132

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           G QIH    K+G  +DLF+ N LI +Y KCG +  +  +F      D +S+NS+I GY  
Sbjct: 133 GMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVK 192

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG-LVDGGLKLFECMTEVYAIEPLV 592
            G    A +LF+ M ME    + +++  ++S  +     VD   KLF  M E   I    
Sbjct: 193 CGLIVSARELFDLMPME--MKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLIS--- 247

Query: 593 EHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
             +  MID   + GR+++A  +   M  + +   W T++
Sbjct: 248 --WNSMIDGYVKHGRIEDAKGLFDVMP-RRDVVTWATMI 283


>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 600

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 177/492 (35%), Positives = 281/492 (57%), Gaps = 21/492 (4%)

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN---PVSWT--TMIDGYVRIAK 310
           F QM   NV  +NAMI  +V  G    A + ++ M E +   P S+T  +++     +  
Sbjct: 94  FTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCA 153

Query: 311 LDEARRLLDQMPYKNI---------AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWN 361
           ++     L QM + +I           QTA++  Y + + + EA ++FD++   D   W 
Sbjct: 154 VE-----LGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWT 208

Query: 362 VMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
            M+   A+ G MD A  LF +M  ++  TWNTMI GY ++  ++ A  +F +M   ++ +
Sbjct: 209 AMLSALARVGDMDSARKLFEEMPERNTATWNTMIDGYTRLGNVESAELLFNQM-PTKDII 267

Query: 422 SWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLA 481
           SW  +I+ + QN+ + DAL I+  M   G   D  T++   SACAH+ AL+LG++IHH  
Sbjct: 268 SWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYV 327

Query: 482 IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
           +  G   D+++G++L+ MYAKCG +  + L+F      ++  WN++I G A++G A +A+
Sbjct: 328 MSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKAL 387

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601
           ++F  M  E + P+ VTFI +LSAC+H GLVD G   F  MT  Y I P + HY CM+D+
Sbjct: 388 RMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDM 447

Query: 602 LSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCY 661
           LS++G L+EA E++K M+ +PN+ IWG LL  C++H N ++   AVE+L  LEP  +  Y
Sbjct: 448 LSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQLMILEPMNSGHY 507

Query: 662 ALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQ-PGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
            LL +M+AE   W EV  +R  M+  G +K+ PG SWIE++  IH F +       + +I
Sbjct: 508 NLLVSMYAEEKDWMEVAHIRSMMKEKGVEKKYPGSSWIELEGTIHQFSASADSHPDSDKI 567

Query: 721 CNTLKTLAAQIR 732
              L  L  Q++
Sbjct: 568 YFILTELDGQLK 579



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 201/409 (49%), Gaps = 30/409 (7%)

Query: 166 MPSKNIVSWNSMLSGYTKNGEMHLASK-FFEAMEERDVVSWNLMLDGYVELDDLDSAWKF 224
           M + N+  +N+M+ G+   G    A + +   +EE +V+  +      V+      A + 
Sbjct: 97  MENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVEL 156

Query: 225 FQKIP--------EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ 276
            Q +         E ++     ++  Y++   + EAR++FD+M  R+  AW AM++A  +
Sbjct: 157 GQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMLSALAR 216

Query: 277 RGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGY 336
            G ++ A +LF EMPERN  +W TMIDGY R+  ++ A  L +QMP K+I + T MI+ Y
Sbjct: 217 VGDMDSARKLFEEMPERNTATWNTMIDGYTRLGNVESAELLFNQMPTKDIISWTTMITCY 276

Query: 337 VQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM--------VNKDI 388
            QNK+  +A  I+ ++  + ++   V +   A       A+ L +++        +N D+
Sbjct: 277 SQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDV 336

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
              + ++  YA+   +D ++ IF ++   +N   WNA+I G   + +   AL++F +M +
Sbjct: 337 YIGSALVDMYAKCGSLDLSLLIFFKLTD-KNLYCWNAVIEGLAVHGYAEKALRMFAIMER 395

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY--VNDLFVGNSLITMYAKCGRI 506
           E    +  T    LSAC H   +  GR    L++   Y    D+     ++ M +K G +
Sbjct: 396 EKIMPNGVTFISILSACTHAGLVDEGRS-RFLSMTRDYDIRPDIRHYGCMVDMLSKSGYL 454

Query: 507 QNAELLFK--DADPVDVISWNSLIAGYAINGN------ATEAIKLFEEM 547
             A  L K  + +P  +I W +L+ G  ++GN      A E + + E M
Sbjct: 455 NEALELIKSMEFEPNSII-WGALLNGCKLHGNCEIAEDAVEQLMILEPM 502



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/421 (23%), Positives = 191/421 (45%), Gaps = 50/421 (11%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHN 90
           V   +  F+QM   N   YN+MI  +   G            P R L  +  M    L  
Sbjct: 87  VHYPVFAFTQMENPNVFVYNAMIKGFVYCGY-----------PFRALQCYVHM----LEE 131

Query: 91  DKVKEARELFDKMFRPDLFSWAL----MITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
             V      F  + +   F  A+    M+ C+  K   E    LF             A+
Sbjct: 132 SNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFES--HLF----------VQTAL 179

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN 206
           V  Y+K+   +EA+K+ D M  ++  +W +MLS   + G+M  A K FE M ER+  +WN
Sbjct: 180 VDFYSKLEILSEARKVFDEMCERDAFAWTAMLSALARVGDMDSARKLFEEMPERNTATWN 239

Query: 207 LMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV-- 264
            M+DGY  L +++SA   F ++P ++++SW TM++ Y++N +  +A  ++ +M +  +  
Sbjct: 240 TMIDGYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIP 299

Query: 265 --VAWNAMIAAYVQRGQIEEAARL--FIEMPERNPVSW--TTMIDGYVRIAKLDEARRLL 318
             V  + + +A    G +E    +  ++     N   +  + ++D Y +   LD +  + 
Sbjct: 300 DEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIF 359

Query: 319 DQMPYKNIAAQTAMISGYVQNKRMDEANQIF-----DKIGTHDVVCWNVMIKGYAQCGRM 373
            ++  KN+    A+I G   +   ++A ++F     +KI  + V   +++       G +
Sbjct: 360 FKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISIL-SACTHAGLV 418

Query: 374 DEAINLFRQM-----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
           DE  + F  M     +  DI  +  M+   ++   +++A+++ + M    N++ W AL++
Sbjct: 419 DEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLN 478

Query: 429 G 429
           G
Sbjct: 479 G 479



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 156/312 (50%), Gaps = 23/312 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S++F Q   +    K   + EA K+F +M +++   + +M+SA A+ G ++ ARKLFE+M
Sbjct: 171 SHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMLSALARVGDMDSARKLFEEM 230

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD 132
           P+RN  +WN+MI GY     V+ A  LF++M   D+ SW  MITCY++  + + A  ++ 
Sbjct: 231 PERNTATWNTMIDGYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYS 290

Query: 133 ------LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSMLSGYT 182
                 ++P   D    + + +  A IG     K++   + S+    ++   ++++  Y 
Sbjct: 291 EMRLNGIIP---DEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYA 347

Query: 183 KNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVT 238
           K G + L+   F  + ++++  WN +++G       + A + F  +  + +    V++++
Sbjct: 348 KCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFIS 407

Query: 239 MLSGYARNGRMLEARRLFDQMP----IR-NVVAWNAMIAAYVQRGQIEEAARLFIEMP-E 292
           +LS     G + E R  F  M     IR ++  +  M+    + G + EA  L   M  E
Sbjct: 408 ILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFE 467

Query: 293 RNPVSWTTMIDG 304
            N + W  +++G
Sbjct: 468 PNSIIWGALLNG 479


>gi|357464703|ref|XP_003602633.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491681|gb|AES72884.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  333 bits (853), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 180/494 (36%), Positives = 284/494 (57%), Gaps = 17/494 (3%)

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMI 302
           Y++ G      + FD +P +    WN +++ Y ++G   +A +LF EMP+RN VS+ ++I
Sbjct: 123 YSKCGCKESIHKAFDDLPNKTTRTWNTLLSFYSKKGVFNQAYKLFDEMPQRNLVSYNSLI 182

Query: 303 DGYVRIAKLDEARRLLDQMP--YKNIAAQTAMISGYVQN-------KRMDEANQIFDKIG 353
            G  R     EA +   +M      +      +   V N       K + + + +   +G
Sbjct: 183 SGLTRHEFHKEAVKFFREMQNGVGGLMLDEFTLVSLVSNCSCLDTVKWLRQVHGVATIVG 242

Query: 354 TH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFE 412
              +++  N +I  Y +CG  + +  LFR MV KD V+W +M+  Y +  ++DDA K+F 
Sbjct: 243 FRTNLILNNALIDAYGKCGEPNSSFCLFRSMVEKDAVSWTSMVVTYTRASRIDDACKVFN 302

Query: 413 EMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQ 472
           EM   + TVSW ALISGF++N    +AL++F  M +EG      T    L ACA  A + 
Sbjct: 303 EM-PVKYTVSWAALISGFVKNGRCYEALEVFHQMIKEGVLPRAQTFVSVLDACASEALIG 361

Query: 473 LGRQIHHLAIKSGYVNDLF---VGNSLITMYAKCGRIQNAELLFKDADPV-DVISWNSLI 528
            G+Q+H   I+    ++LF   V N+L+ MYAKCG +++AE LF+    V DV+SWN+LI
Sbjct: 362 RGKQVHCQIIRGRSSDNLFNVYVFNALMDMYAKCGDMKSAENLFEMMIHVKDVVSWNTLI 421

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI 588
            G+A NG   +++ +F+ M+   + P+ VTF+GVLSAC+H GLV+ GL+L + M   Y +
Sbjct: 422 TGFAQNGRGEDSLAVFDRMIESNIEPNHVTFLGVLSACNHAGLVNAGLELLDSMERRYGV 481

Query: 589 EPLVEHYACMIDLLSRAGRLDEAFEMVKGM--KIKPNAGIWGTLLGACRMHQNIKLGRIA 646
           +P   HYA +IDLL R  RL+EA  +++ +  +I  +  +WG +LG CR+H N++L R A
Sbjct: 482 KPKSNHYALLIDLLGRKNRLEEAMCLIEKVPNEISNHIAMWGAVLGGCRVHGNLELARKA 541

Query: 647 VEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHT 706
            E L  LEP+ T  Y +LSN++A +GRW +  ++R  M+  G +K+P  S IE+K   H 
Sbjct: 542 AEALFALEPENTGRYVMLSNIYAASGRWSDTNRIRNVMKERGLKKEPAFSRIELKESRHE 601

Query: 707 FLSGDPKQCRTAEI 720
           F++ D    +  EI
Sbjct: 602 FVAKDKFHPQIGEI 615



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 164/331 (49%), Gaps = 57/331 (17%)

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           +T   N ++  Y+K G      K  D +P+K   +WN++LS Y+K G  + A K F+ M 
Sbjct: 112 ETFLANGLIDLYSKCGCKESIHKAFDDLPNKTTRTWNTLLSFYSKKGVFNQAYKLFDEMP 171

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTM----LSGYARNGRMLEARR 254
           +R++VS+N ++ G    +    A KFF+++  QN V  + +    L     N   L+  +
Sbjct: 172 QRNLVSYNSLISGLTRHEFHKEAVKFFREM--QNGVGGLMLDEFTLVSLVSNCSCLDTVK 229

Query: 255 LFDQMP--------IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYV 306
              Q+           N++  NA+I AY + G+   +  LF  M E++ VSWT+M+  Y 
Sbjct: 230 WLRQVHGVATIVGFRTNLILNNALIDAYGKCGEPNSSFCLFRSMVEKDAVSWTSMVVTYT 289

Query: 307 RIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI-------------- 352
           R +++D+A ++ ++MP K   +  A+ISG+V+N R  EA ++F ++              
Sbjct: 290 RASRIDDACKVFNEMPVKYTVSWAALISGFVKNGRCYEALEVFHQMIKEGVLPRAQTFVS 349

Query: 353 ----------------------------GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
                                          +V  +N ++  YA+CG M  A NLF  M+
Sbjct: 350 VLDACASEALIGRGKQVHCQIIRGRSSDNLFNVYVFNALMDMYAKCGDMKSAENLFEMMI 409

Query: 385 N-KDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           + KD+V+WNT+I G+AQ  + +D++ +F+ M
Sbjct: 410 HVKDVVSWNTLITGFAQNGRGEDSLAVFDRM 440



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/352 (28%), Positives = 167/352 (47%), Gaps = 38/352 (10%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            F  N  I    K G  E   K F  +  K T T+N+++S Y+K G  N A KLF++MPQ
Sbjct: 113 TFLANGLIDLYSKCGCKESIHKAFDDLPNKTTRTWNTLLSFYSKKGVFNQAYKLFDEMPQ 172

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RNLVS+NS+I+G   ++  KEA + F +M         LM+  +T          L  L+
Sbjct: 173 RNLVSYNSLISGLTRHEFHKEAVKFFREMQNG---VGGLMLDEFT----------LVSLV 219

Query: 135 PNKE--DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
            N    DT  W   V G A I  +             N++  N+++  Y K GE + +  
Sbjct: 220 SNCSCLDTVKWLRQVHGVATIVGFR-----------TNLILNNALIDAYGKCGEPNSSFC 268

Query: 193 FFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA 252
            F +M E+D VSW  M+  Y     +D A K F ++P +  VSW  ++SG+ +NGR  EA
Sbjct: 269 LFRSMVEKDAVSWTSMVVTYTRASRIDDACKVFNEMPVKYTVSWAALISGFVKNGRCYEA 328

Query: 253 RRLFDQMPIRNVV----AWNAMIAAYVQRGQIEEAARLFIEMPER-------NPVSWTTM 301
             +F QM    V+     + +++ A      I    ++  ++          N   +  +
Sbjct: 329 LEVFHQMIKEGVLPRAQTFVSVLDACASEALIGRGKQVHCQIIRGRSSDNLFNVYVFNAL 388

Query: 302 IDGYVRIAKLDEARRLLDQMPY-KNIAAQTAMISGYVQNKRMDEANQIFDKI 352
           +D Y +   +  A  L + M + K++ +   +I+G+ QN R +++  +FD++
Sbjct: 389 MDMYAKCGDMKSAENLFEMMIHVKDVVSWNTLITGFAQNGRGEDSLAVFDRM 440



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 152/344 (44%), Gaps = 60/344 (17%)

Query: 8   IGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARK 67
           +G + + + N N  I   GK G    +  +F  M +K+ V++ SM+  Y +  R++DA K
Sbjct: 241 VGFRTNLILN-NALIDAYGKCGEPNSSFCLFRSMVEKDAVSWTSMVVTYTRASRIDDACK 299

Query: 68  LFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP--------------------- 106
           +F +MP +  VSW ++I+G++ N +  EA E+F +M +                      
Sbjct: 300 VFNEMPVKYTVSWAALISGFVKNGRCYEALEVFHQMIKEGVLPRAQTFVSVLDACASEAL 359

Query: 107 ---------------------DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNA 145
                                +++ +  ++  Y + G+++ A  LF+++ + +D   WN 
Sbjct: 360 IGRGKQVHCQIIRGRSSDNLFNVYVFNALMDMYAKCGDMKSAENLFEMMIHVKDVVSWNT 419

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
           ++ G+A+ G   ++  + D M   NI    V++  +LS     G ++   +  ++ME R 
Sbjct: 420 LITGFAQNGRGEDSLAVFDRMIESNIEPNHVTFLGVLSACNHAGLVNAGLELLDSMERRY 479

Query: 202 VVS-----WNLMLDGYVELDDLDSAWKFFQKIPEQ---NVVSWVTMLSGYARNGRMLEAR 253
            V      + L++D     + L+ A    +K+P +   ++  W  +L G   +G +  AR
Sbjct: 480 GVKPKSNHYALLIDLLGRKNRLEEAMCLIEKVPNEISNHIAMWGAVLGGCRVHGNLELAR 539

Query: 254 R----LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           +    LF   P  N   +  +   Y   G+  +  R+   M ER
Sbjct: 540 KAAEALFALEP-ENTGRYVMLSNIYAASGRWSDTNRIRNVMKER 582



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           +S C    +L+ G+ +H   IK+    + F+ N LI +Y+KCG  ++    F D      
Sbjct: 85  ISNCVSAKSLKHGKALHSQLIKTALFFETFLANGLIDLYSKCGCKESIHKAFDDLPNKTT 144

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEM 547
            +WN+L++ Y+  G   +A KLF+EM
Sbjct: 145 RTWNTLLSFYSKKGVFNQAYKLFDEM 170


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 198/634 (31%), Positives = 326/634 (51%), Gaps = 70/634 (11%)

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           DT C N ++  YAK+G    A++L D MP +N+VS+ +++ GY   G    A+  F  ++
Sbjct: 83  DTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQ 142

Query: 199 ----ERDVVSWNLMLDGYVELDDLD-------SAWKFFQKIPEQNVVSWVTMLSGYARNG 247
               E +      +L   V +D           A K      ++N     +++  Y+  G
Sbjct: 143 REGHEVNHFVLTTILKVLVAMDAPGLTCCIHACACKLGH---DRNAFVGSSLIDAYSLCG 199

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMID 303
            +  AR +FD +  ++ V W AM++ Y +    E+A   F +M     + NP   T+++ 
Sbjct: 200 AVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLK 259

Query: 304 GYVRIAKL--------DEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
             V ++             + L D  P+       A++  Y +   +++A  +F+ I   
Sbjct: 260 AAVCLSSAVLGKGIHGCAVKTLCDTEPH----VGGALLDMYAKCGYIEDARTVFEIIPHD 315

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIV-------------------------- 389
           DV+ W+ +I  YAQ  + ++A  +F +M+   +V                          
Sbjct: 316 DVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIH 375

Query: 390 -------------TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
                          N ++  YA+ R M+++++IF  + +  N VSWN +I G+ Q+ F 
Sbjct: 376 NLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSL-RDANEVSWNTIIVGYCQSGFA 434

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSL 496
            DAL +F  M      +   T +  L ACA+ A+++   QIH L  KS + ND  V NSL
Sbjct: 435 EDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSL 494

Query: 497 ITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
           I  YAKCG I++A  +F+     DV+SWN++I+GYA++G AT+A++LF  M      P+ 
Sbjct: 495 IDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPND 554

Query: 557 VTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVK 616
           VTF+ +LS C   GLV+ GL LF  MT  + I+P ++HY C++ LL RAGRL++A + + 
Sbjct: 555 VTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIG 614

Query: 617 GMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDE 676
            +   P+  +W  LL +C +H+N+ LG+ + EK+ E+EPQ  + Y LLSNM+A AG  D+
Sbjct: 615 DIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVLLSNMYAAAGILDQ 674

Query: 677 VEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSG 710
           V  +R SM   G +K+ G SW+E+K ++H F  G
Sbjct: 675 VALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVG 708



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 124/506 (24%), Positives = 226/506 (44%), Gaps = 86/506 (16%)

Query: 242 GYARNGRMLEARRL-FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTT 300
           G AR GR + AR +    +   +    N ++  Y + G +  A RLF  MPERN VS+ T
Sbjct: 61  GDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVT 120

Query: 301 MIDGYVRIAKLDEARRLLDQMPY------------------------------------- 323
           ++ GY      +EA  L  ++                                       
Sbjct: 121 LVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAPGLTCCIHACACKLG 180

Query: 324 --KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
             +N    +++I  Y     +  A  +FD I   D V W  M+  Y++    ++A+N F 
Sbjct: 181 HDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFS 240

Query: 382 QM--------------VNKDIVTWNTMIAG-------------------------YAQIR 402
           +M              V K  V  ++ + G                         YA+  
Sbjct: 241 KMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCG 300

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
            ++DA  +FE +    + + W+ LIS + Q+  +  A ++F+ M +     +  +L+  L
Sbjct: 301 YIEDARTVFEII-PHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVL 359

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
            ACA++A L LG+QIH+L IK GY ++LFVGN+L+ +YAKC  ++N+  +F+     + +
Sbjct: 360 QACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEV 419

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           SWN++I GY  +G A +A+ +F+EM    V    VTF  VL AC++   +   +++   +
Sbjct: 420 SWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLI 479

Query: 583 TE-VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIK 641
            +  +  + +V +   +ID  ++ G + +A ++ + + I+ +   W  ++    +H    
Sbjct: 480 EKSTFNNDTIVCNS--LIDTYAKCGCIRDALKVFESI-IQCDVVSWNAIISGYALHGRAT 536

Query: 642 LGRIAVEKL--SELEPQKTSCYALLS 665
                  ++  S+ +P   +  ALLS
Sbjct: 537 DALELFNRMNKSDTKPNDVTFVALLS 562



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 132/598 (22%), Positives = 264/598 (44%), Gaps = 68/598 (11%)

Query: 41  MSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF 100
           ++Q +T   N +++ YAK G +  AR+LF+ MP+RN+VS+ +++ GY      +EA  LF
Sbjct: 79  VAQLDTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLF 138

Query: 101 DKMFRPD-------LFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKI 153
            ++ R         L +   ++      G           L +  +    ++++  Y+  
Sbjct: 139 RRLQREGHEVNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLC 198

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV 213
           G  + A+ + D +  K+ V+W +M+S Y++N     A   F  M          +L   +
Sbjct: 199 GAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVL 258

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWV--------TMLSGYARNGRMLEARRLFDQMPIRNVV 265
           +     S+    + I    V +           +L  YA+ G + +AR +F+ +P  +V+
Sbjct: 259 KAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVI 318

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLD---EARRLL 318
            W+ +I+ Y Q  Q E+A  +F+ M       N  S + ++     +A LD   +   L+
Sbjct: 319 LWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLV 378

Query: 319 DQMPYKN-IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAI 377
            ++ Y++ +    A++  Y + + M+ + +IF  +   + V WN +I GY Q G  ++A+
Sbjct: 379 IKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDAL 438

Query: 378 NLFRQM---------------------------------------VNKDIVTWNTMIAGY 398
           ++F++M                                        N D +  N++I  Y
Sbjct: 439 SVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTY 498

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           A+   + DA+K+FE +  + + VSWNA+ISG+  +    DAL++F  M +   K +  T 
Sbjct: 499 AKCGCIRDALKVFESI-IQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTF 557

Query: 459 ACALSACAHLAALQLGRQI-HHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD-- 515
              LS C     +  G  + + + +       +     ++ +  + GR+ +A     D  
Sbjct: 558 VALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIP 617

Query: 516 ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVD 573
           + P  ++ W +L++   ++ N     K   E V+E    D  T++ + +  +  G++D
Sbjct: 618 STPSPMV-WRALLSSCVVHKNVALG-KFSAEKVLEIEPQDETTYVLLSNMYAAAGILD 673



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 123/256 (48%), Gaps = 8/256 (3%)

Query: 365 KGYAQCGRMDEAINLFRQMVNK-DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
           +G A+ GR   A  + R  V + D    N ++  YA++  +  A ++F+ M +R N VS+
Sbjct: 60  RGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGMPER-NMVSF 118

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
             L+ G+       +A  +F  + +EG + +H  L   L     + A  L   IH  A K
Sbjct: 119 VTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAPGLTCCIHACACK 178

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
            G+  + FVG+SLI  Y+ CG + +A  +F      D ++W ++++ Y+ N    +A+  
Sbjct: 179 LGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNT 238

Query: 544 FEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYA-IEPLVEHYACMIDLL 602
           F +M M G  P+P     VL A   +     G  +  C  +     EP V     ++D+ 
Sbjct: 239 FSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVG--GALLDMY 296

Query: 603 SRAGRLDEA---FEMV 615
           ++ G +++A   FE++
Sbjct: 297 AKCGYIEDARTVFEII 312



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 84/390 (21%), Positives = 179/390 (45%), Gaps = 32/390 (8%)

Query: 26  GKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIA 85
            K G +E+A  +F  +   + + ++ +IS YA++ +   A ++F +M + ++V     ++
Sbjct: 297 AKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLS 356

Query: 86  GYLHN-------DKVKEARELFDKM-FRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
           G L         D  ++   L  K+ +  +LF    ++  Y +   +E + E+F  L + 
Sbjct: 357 GVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDA 416

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASKF 193
            + + WN ++ GY + G   +A  +   M + ++    V+++S+L        +    + 
Sbjct: 417 NEVS-WNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQI 475

Query: 194 FEAMEE----RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRM 249
              +E+     D +  N ++D Y +   +  A K F+ I + +VVSW  ++SGYA +GR 
Sbjct: 476 HSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRA 535

Query: 250 LEARRLFDQM----PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTT 300
            +A  LF++M       N V + A+++     G + +   LF  M   + +      +T 
Sbjct: 536 TDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTC 595

Query: 301 MIDGYVRIAKLDEARRLLDQMP-YKNIAAQTAMISGYVQNKRMD----EANQIFDKIGTH 355
           ++    R  +L++A + +  +P   +     A++S  V +K +      A ++ + I   
Sbjct: 596 IVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLE-IEPQ 654

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
           D   + ++   YA  G +D+   L + M N
Sbjct: 655 DETTYVLLSNMYAAAGILDQVALLRKSMRN 684



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 79/163 (48%), Gaps = 15/163 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM----PQ 74
           N  I    K G + +A+K+F  + Q + V++N++IS YA +GR  DA +LF +M     +
Sbjct: 492 NSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTK 551

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARE 129
            N V++ ++++       V +   LF+ M      +P +  +  ++    R G L  A +
Sbjct: 552 PNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALK 611

Query: 130 LFDLLPNKEDTACWNAMVAGY-----AKIGNYNEAKKLLDAMP 167
               +P+      W A+++         +G ++ A+K+L+  P
Sbjct: 612 FIGDIPSTPSPMVWRALLSSCVVHKNVALGKFS-AEKVLEIEP 653


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 186/556 (33%), Positives = 294/556 (52%), Gaps = 50/556 (8%)

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP----IRNVVAWNA 269
             D L  A   F+ I E N++ W TM  G+A +   + A  L+  M     + N   +  
Sbjct: 34  HFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPF 93

Query: 270 MIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           ++ +  +     E  ++   +     + +    T++I  YV+  +L++AR++ DQ  +++
Sbjct: 94  LLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRD 153

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-- 383
           + + TA+I+GY     +  A ++FD+I   DVV WN MI GYA+ G   EA+ LF++M  
Sbjct: 154 VVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMK 213

Query: 384 ------------------------VNKDIVTW-------------NTMIAGYAQIRQMDD 406
                                   + + + +W             N +I  Y +  +++ 
Sbjct: 214 TNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVET 273

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
           A  +FE +   ++ +SWN LI G+     + +AL +F  M + G+  +  T+   L ACA
Sbjct: 274 ACGLFEGL-SYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACA 332

Query: 467 HLAALQLGRQIHHLAIK--SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
           HL A+++GR IH    K   G  N      SLI MYAKCG I+ A+ +F       + SW
Sbjct: 333 HLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSW 392

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           N++I G+A++G A  A  +F  M    + PD +TF+G+LSACSH G++D G  +F  M E
Sbjct: 393 NAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKE 452

Query: 585 VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
            Y I P +EHY CMIDLL  +G   EA EM+  M+++P+  IW +LL AC+MH N++LG 
Sbjct: 453 DYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGE 512

Query: 645 IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQI 704
              + L ++EP+    Y LLSN++A AGRW+EV K+R  +   G +K PGCS IE+ + +
Sbjct: 513 SYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVV 572

Query: 705 HTFLSGDPKQCRTAEI 720
           H F+ GD    R  EI
Sbjct: 573 HEFIIGDKFHPRNREI 588



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 161/328 (49%), Gaps = 21/328 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           ++     I+   ++GR+E+A K+F Q S ++ V+Y ++I+ YA  G +  A+K+F+++P 
Sbjct: 123 LYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPI 182

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKAREL 130
           +++VSWN+MI+GY      KEA ELF +M     RPD  +   +++   +   +E  R++
Sbjct: 183 KDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQV 242

Query: 131 FDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
              + +     +    NA++  Y K G    A  L + +  K+++SWN+++ GYT     
Sbjct: 243 HSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLY 302

Query: 188 HLASKFFEAM----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ-----NVVSWVT 238
             A   F+ M    E  + V+   +L     L  ++        I ++     N  S  T
Sbjct: 303 KEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRT 362

Query: 239 -MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ER 293
            ++  YA+ G +  A+++FD +  R++ +WNAMI  +   G+   A  +F  M     E 
Sbjct: 363 SLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEP 422

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           + +++  ++        LD  R +   M
Sbjct: 423 DDITFVGLLSACSHSGMLDLGRHIFRSM 450



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 129/513 (25%), Positives = 206/513 (40%), Gaps = 104/513 (20%)

Query: 89  HNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF------DLLPNKEDTAC 142
           H D +  A  +F+ +  P+L  W  M   +    +   A  L+       LLPN     C
Sbjct: 34  HFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPN-----C 88

Query: 143 WNA--MVAGYAKIGNYNEAKKL----LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEA 196
           +    ++   AK   + E +++    L      ++    S++S Y +NG +  A K F+ 
Sbjct: 89  YTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQ 148

Query: 197 MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF 256
              RDVVS+  ++ GY     + SA K F +IP ++VVSW  M+SGYA  G   EA  LF
Sbjct: 149 SSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELF 208

Query: 257 DQM------PI--------------------RNVVAW-------------NAMIAAYVQR 277
            +M      P                     R V +W             NA+I  Y++ 
Sbjct: 209 KEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKC 268

Query: 278 GQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM----PYKNIAAQTAMI 333
           G++E A  LF  +  ++ +SW T+I GY  +    EA  L  +M       N     +++
Sbjct: 269 GEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSIL 328

Query: 334 SGYVQNKRMDEANQIFDKIGTHDVVCWNV------MIKGYAQCGRMDEAINLFRQMVNKD 387
                   ++    I   I        N       +I  YA+CG ++ A  +F  ++N+ 
Sbjct: 329 PACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRS 388

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMT 447
           + +WN MI G+A   + + A  IF  M  R+N +                          
Sbjct: 389 LSSWNAMIFGFAMHGRANAAFDIFSRM--RKNEI-------------------------- 420

Query: 448 QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY--VNDLFVGNSLITMYAKCGR 505
               + D  T    LSAC+H   L LGR I   ++K  Y     L     +I +    G 
Sbjct: 421 ----EPDDITFVGLLSACSHSGMLDLGRHIFR-SMKEDYKITPKLEHYGCMIDLLGHSGL 475

Query: 506 IQNAELLFK--DADPVDVISWNSLIAGYAINGN 536
            + AE +    + +P  VI W SL+    ++GN
Sbjct: 476 FKEAEEMINTMEMEPDGVI-WCSLLKACKMHGN 507



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 171/375 (45%), Gaps = 27/375 (7%)

Query: 48  TYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPD 107
            + S+IS Y +NGR+ DARK+F+Q   R++VS+ ++I GY     +  A+++FD++   D
Sbjct: 125 VHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKD 184

Query: 108 LFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLL- 163
           + SW  MI+ Y   G  ++A ELF  +     + D +   ++V+  A+  +    +++  
Sbjct: 185 VVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHS 244

Query: 164 ---DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
              D     N+   N+++  Y K GE+  A   FE +  +DV+SWN ++ GY  ++    
Sbjct: 245 WIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKE 304

Query: 221 AWKFFQKI----PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNA------M 270
           A   FQ++       N V+ +++L   A  G +   R +   +  R     NA      +
Sbjct: 305 ALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSL 364

Query: 271 IAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ- 329
           I  Y + G IE A ++F  +  R+  SW  MI G+    + + A  +  +M    I    
Sbjct: 365 IDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDD 424

Query: 330 ---TAMISGYVQNKRMDEANQIF-----DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
                ++S    +  +D    IF     D   T  +  +  MI      G   EA  +  
Sbjct: 425 ITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMIN 484

Query: 382 QM-VNKDIVTWNTMI 395
            M +  D V W +++
Sbjct: 485 TMEMEPDGVIWCSLL 499



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 102/460 (22%), Positives = 199/460 (43%), Gaps = 98/460 (21%)

Query: 65  ARKLFEQMPQRNLVSWNSMIAGY-LHNDKV------------------------------ 93
           A  +FE + + NL+ WN+M  G+ L +D V                              
Sbjct: 41  AISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAK 100

Query: 94  ----KEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNA 145
               +E +++   + +     DL+    +I+ Y + G LE AR++FD   ++ D   + A
Sbjct: 101 SKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHR-DVVSYTA 159

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE------ 199
           ++ GYA  G    A+K+ D +P K++VSWN+M+SGY + G    A + F+ M +      
Sbjct: 160 LITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPD 219

Query: 200 --------------------RDVVSW-------------NLMLDGYVELDDLDSAWKFFQ 226
                               R V SW             N ++D Y++  ++++A   F+
Sbjct: 220 ESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFE 279

Query: 227 KIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM----PIRNVVAWNAMIAAYVQRGQIEE 282
            +  ++V+SW T++ GY       EA  LF +M       N V   +++ A    G IE 
Sbjct: 280 GLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEI 339

Query: 283 AARLFIEMPER-----NPVSW-TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGY 336
              + + + +R     N  S  T++ID Y +   ++ A+++ D +  +++++  AMI G+
Sbjct: 340 GRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGF 399

Query: 337 VQNKRMDEANQIFDKIGTHDV----VCWNVMIKGYAQCGRMDEAINLFRQM-----VNKD 387
             + R + A  IF ++  +++    + +  ++   +  G +D   ++FR M     +   
Sbjct: 400 AMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPK 459

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
           +  +  MI          +A ++   M    + V W +L+
Sbjct: 460 LEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLL 499


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  332 bits (852), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 185/545 (33%), Positives = 303/545 (55%), Gaps = 41/545 (7%)

Query: 224 FFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM------PIRNVVAWN----AMIAA 273
           F + + + +V SW ++++ +AR+G  L+A   F  M      P R+         + +  
Sbjct: 42  FGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYD 101

Query: 274 YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMI 333
                QI + A  F+     +    + +ID Y +   L++AR+L D++P +N+ + T+MI
Sbjct: 102 LCAGKQIHQQA--FVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMI 159

Query: 334 SGYVQNKRMDEANQIFDK-----------------------IGTHDVVCWNVMIKGYAQC 370
           SGYVQN+R  EA  +F +                       +G     C  V +K   +C
Sbjct: 160 SGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTEC 219

Query: 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
                    F       +   NT++  YA+  ++  + K+F+ M +  +  SWN+LI+ +
Sbjct: 220 VHGLAVKKGFEGC----LAVGNTLMDAYAKCGEISVSRKVFDGM-EETDVCSWNSLIAVY 274

Query: 431 LQNEFHLDALKIFVLMTQEGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND 489
            QN   ++A  +F  M + G+ + +  TL+  L ACAH  ALQ+G+ IH   +K    ++
Sbjct: 275 AQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDN 334

Query: 490 LFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549
           L VG S++ MY KCGR++ A   F      +V SW  ++AGY ++G+  EA+K+F EM+ 
Sbjct: 335 LVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIR 394

Query: 550 EGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLD 609
            G+ P+ +TF+ VL+ACSH GL+  G   F  M   + +EP +EHY+CM+DLL RAG L 
Sbjct: 395 CGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLK 454

Query: 610 EAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHA 669
           EA+ +++ MK+KP+  +WG+LLGACR+H+N++LG I+  KL +L+P     Y LLSN++A
Sbjct: 455 EAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYA 514

Query: 670 EAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAA 729
           +AGRWD+VE++R+ M+  G  K PG S +E K ++H FL GD +  +  +I   L  L  
Sbjct: 515 DAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDELNV 574

Query: 730 QIRNT 734
           +++  
Sbjct: 575 KLQEV 579



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 138/268 (51%), Gaps = 27/268 (10%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF 109
           +++I  Y+K G +NDARKLF+++P+RN+VSW SMI+GY+ N++ +EA  LF +    D  
Sbjct: 125 SALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDET 184

Query: 110 SW-----------ALMITCYTRKGE---LEKARELFDLLPNKED----TACWNAMVAGYA 151
            +           ++++ C         ++   E    L  K+      A  N ++  YA
Sbjct: 185 DYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYA 244

Query: 152 KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
           K G  + ++K+ D M   ++ SWNS+++ Y +NG    A   F  M +R  V +N +   
Sbjct: 245 KCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLS 304

Query: 212 YVELDDLDS-AWKFFQKIPEQ--------NVVSWVTMLSGYARNGRMLEARRLFDQMPIR 262
            V L    S A +  + I +Q        N+V   +++  Y + GR+  AR+ FD++  +
Sbjct: 305 AVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRK 364

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEM 290
           NV +W  M+A Y   G  +EA ++F EM
Sbjct: 365 NVKSWTVMVAGYGMHGHGKEAMKVFYEM 392



 Score =  109 bits (272), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 106/464 (22%), Positives = 206/464 (44%), Gaps = 51/464 (10%)

Query: 128 RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------PSKNI--VSWNSMLS 179
           R +F    +K     WN+++A +A+ G+  +A     +M      P+++    +  S  S
Sbjct: 39  RSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSS 98

Query: 180 GYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTM 239
            Y       +  + F      D+   + ++D Y +   L+ A K F +IPE+NVVSW +M
Sbjct: 99  LYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSM 158

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQ------IEEAARLFIEMP-- 291
           +SGY +N R  EA  LF +  + +   ++ ++   V          I   AR+ ++    
Sbjct: 159 ISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTE 218

Query: 292 -----------ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340
                      E       T++D Y +  ++  +R++ D M   ++ +  ++I+ Y QN 
Sbjct: 219 CVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNG 278

Query: 341 RMDEANQIFDKIGT-----HDVVCWNVMIKGYAQCGRMDEAINLFRQMVN----KDIVTW 391
              EA  +F  +       ++ V  + ++   A  G +     +  Q+V      ++V  
Sbjct: 279 LSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVG 338

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
            +++  Y +  +++ A K F+ + KR+N  SW  +++G+  +    +A+K+F  M + G 
Sbjct: 339 TSIVDMYCKCGRVEMARKAFDRL-KRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGI 397

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG----NSLITMYAKCGRIQ 507
           K ++ T    L+AC+H   L+ G    H   K     D+  G    + ++ +  + G ++
Sbjct: 398 KPNYITFVSVLAACSHAGLLKEGW---HWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLK 454

Query: 508 NAELLFKD--ADPVDVISWNSLIAGYAINGNA----TEAIKLFE 545
            A  L ++    P D I W SL+    I+ N       A KLF+
Sbjct: 455 EAYGLIQEMKVKP-DFIVWGSLLGACRIHKNVELGEISARKLFK 497



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 150/316 (47%), Gaps = 46/316 (14%)

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           +F +   + +  SWN++I+ F ++   L AL  F  M +     + ST  C + +C+ L 
Sbjct: 41  MFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLY 100

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
            L  G+QIH  A   GY +D+FV ++LI MY+KCG + +A  LF +    +V+SW S+I+
Sbjct: 101 DLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMIS 160

Query: 530 GYAINGNATEAIKLFEEMVM-----------EGVAPDPVTFIGVLSACSHV--------- 569
           GY  N  A EA+ LF+E ++            GV  D V    V+SAC+ V         
Sbjct: 161 GYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECV 220

Query: 570 -GLV-----DGGLKLFECMTEVYA-----------IEPLVEHYAC----MIDLLSRAGRL 608
            GL      +G L +   + + YA            + + E   C    +I + ++ G  
Sbjct: 221 HGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLS 280

Query: 609 DEAF----EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYAL- 663
            EAF    +MVK  +++ NA     +L AC     +++G+   +++ ++E +        
Sbjct: 281 VEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTS 340

Query: 664 LSNMHAEAGRWDEVEK 679
           + +M+ + GR +   K
Sbjct: 341 IVDMYCKCGRVEMARK 356



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 97/447 (21%), Positives = 196/447 (43%), Gaps = 67/447 (14%)

Query: 37  IFSQMSQKNTV-TYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKE 95
           +F +   K +V ++NS+I+ +A++G    A   F  M + +L    S          +K 
Sbjct: 41  MFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPC-----TIKS 95

Query: 96  ARELFDKM-------------FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTAC 142
              L+D               +  D+F  + +I  Y++ G L  AR+LFD +P + +   
Sbjct: 96  CSSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPER-NVVS 154

Query: 143 WNAMVAGYAKIGNYNEAKKLL---------------------DAMPSKNIVSWNSMLSGY 181
           W +M++GY +     EA  L                      D++    ++S  + +   
Sbjct: 155 WTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVK 214

Query: 182 TKNGEMH--LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTM 239
           +    +H     K FE      +   N ++D Y +  ++  + K F  + E +V SW ++
Sbjct: 215 SVTECVHGLAVKKGFEGC----LAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSL 270

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV----------QRGQIEEAARLFIE 289
           ++ YA+NG  +EA  LF  M  R  V +NA+  + V          Q G+      + +E
Sbjct: 271 IAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKME 330

Query: 290 MPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF 349
           + E N V  T+++D Y +  +++ AR+  D++  KN+ + T M++GY  +    EA ++F
Sbjct: 331 L-EDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVF 389

Query: 350 DKIGTHDV----VCWNVMIKGYAQCGRMDEAINLFRQM-----VNKDIVTWNTMIAGYAQ 400
            ++    +    + +  ++   +  G + E  + F +M     V   I  ++ M+    +
Sbjct: 390 YEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGR 449

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALI 427
              + +A  + +EM  + + + W +L+
Sbjct: 450 AGYLKEAYGLIQEMKVKPDFIVWGSLL 476



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 133/292 (45%), Gaps = 27/292 (9%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF 109
           N+++ AYAK G ++ +RK+F+ M + ++ SWNS+IA Y  N    EA  LF  M +    
Sbjct: 237 NTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEV 296

Query: 110 SW------ALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAK 160
            +      A+++ C    G L+  + + D +   E   +     ++V  Y K G    A+
Sbjct: 297 RYNAVTLSAVLLAC-AHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMAR 355

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSWNLMLDGYVELD 216
           K  D +  KN+ SW  M++GY  +G    A K F  M     + + +++  +L       
Sbjct: 356 KAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAG 415

Query: 217 DLDSAWKFFQKIP-----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAM 270
            L   W +F K+      E  +  +  M+    R G + EA  L  +M ++ + + W ++
Sbjct: 416 LLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSL 475

Query: 271 IAAY-----VQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL 317
           + A      V+ G+I  +AR   ++   N   +  + + Y    + D+  R+
Sbjct: 476 LGACRIHKNVELGEI--SARKLFKLDPSNCGYYVLLSNIYADAGRWDDVERM 525


>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
 gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
          Length = 785

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 214/679 (31%), Positives = 345/679 (50%), Gaps = 41/679 (6%)

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKG-------ELE 125
           P  +L   N+++A Y        AR L D+M R +  S+ L+I  Y+R+G        L 
Sbjct: 39  PAASLFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLA 98

Query: 126 KAREL-FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
           +AR    D+       A      AG+ + G    A  +LD + S   VS NS++S Y+K 
Sbjct: 99  RARRAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVS-NSLVSMYSKC 157

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQN-------VVSWV 237
           GEM  A + F+  EERD VSWN ++ GYV     +   + F  +           + S +
Sbjct: 158 GEMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVI 217

Query: 238 TMLSGYARNGRMLEARRLFDQMPIR-----NVVAWNAMIAAYVQRGQIEEAARLFIEMPE 292
              SG  R    ++         I+     +V   +AMI  Y ++G + EAA LF  + E
Sbjct: 218 KCCSG--RGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQE 275

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
            N V + TMI G+ R           + +  K +A++   +   VQ++ M      F   
Sbjct: 276 PNVVMFNTMIAGFCRT----------ETVIGKEVASEALTLYSEVQSRGMQPTEFTFSS- 324

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFE 412
                V     + GY + G+      + +    +D    + +I  Y     M+D  + F 
Sbjct: 325 -----VLRACNLAGYLEFGKQIHG-QVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFR 378

Query: 413 EMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQ 472
              K  + V+W A++SG +QNE H  AL +F      G K D  T++  ++ACA LA  +
Sbjct: 379 SSPK-HDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVAR 437

Query: 473 LGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYA 532
            G QI   A KSG+     +GNS + MYA+ G +  A   F++ +  DV+SW+++I+ +A
Sbjct: 438 AGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHA 497

Query: 533 INGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLV 592
            +G A +A+  F+EMV   V P+ +TF+GVL+ACSH GLVD GL+ +E MT+ Y + P +
Sbjct: 498 QHGCARDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYYETMTKDYGLSPTI 557

Query: 593 EHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSE 652
           +H  C++DLL RAGRL +A   +       +  IW +LL +CR+H++++ G++   ++ E
Sbjct: 558 KHCTCVVDLLGRAGRLADAEAFISNSIFHADPVIWRSLLASCRIHRDLERGQLVANRIME 617

Query: 653 LEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDP 712
           LEP  ++ Y +L NM+ +AG      K R  M+  G +K+PG SWIE+K  +H+F++GD 
Sbjct: 618 LEPTSSASYVILYNMYLDAGELSLASKTRDLMKQRGVKKEPGLSWIELKCGVHSFVAGDK 677

Query: 713 KQCRTAEICNTLKTLAAQI 731
               ++ I   L+ + ++I
Sbjct: 678 SHPESSAIYTKLEEMLSRI 696



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 140/577 (24%), Positives = 247/577 (42%), Gaps = 82/577 (14%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP--- 106
           N++++AY + G    AR+L ++MP+RN VS+N +I  Y        + E   +  R    
Sbjct: 47  NTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRAGVD 106

Query: 107 -DLFSWALMITCYTRKGELEKARELFDL-LPNKEDTACW--NAMVAGYAKIGNYNEAKKL 162
            D FS+A  +   +R G L   R +  L + +   +  +  N++V+ Y+K G   EA+++
Sbjct: 107 VDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRV 166

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME------------------------ 198
            D    ++ VSWNS++SGY + G      + F  M                         
Sbjct: 167 FDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDG 226

Query: 199 -----------------ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
                            + DV   + M+D Y +   L  A   F+ + E NVV + TM++
Sbjct: 227 TMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIA 286

Query: 242 GYARNGRML------EARRLFDQMPIRNV---------VAWNAMIAAYVQRGQIEEAARL 286
           G+ R   ++      EA  L+ ++  R +         V     +A Y++ G+      +
Sbjct: 287 GFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVI 346

Query: 287 FIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEAN 346
                E + +  + +ID Y     +++  R     P  +I   TAM+SG VQN+  ++A 
Sbjct: 347 KYTFQEDDFIG-SALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKAL 405

Query: 347 QIF-DKIGT---HDVVCWNVMIKGYAQ--CGRMDEAINLF--RQMVNKDIVTWNTMIAGY 398
            +F + +G     D+   + ++   A     R  E I  F  +   ++  V  N+ +  Y
Sbjct: 406 SLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMY 465

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           A+   +D A + F+EM +  + VSW+A+IS   Q+    DAL  F  M       +  T 
Sbjct: 466 ARSGDVDAATRRFQEM-ESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITF 524

Query: 459 ACALSACAHLAALQLGRQIHHLAIKS-GYVNDLFVGNSLITMYAKCGRIQNAELLFKD-- 515
              L+AC+H   +  G + +    K  G    +     ++ +  + GR+ +AE    +  
Sbjct: 525 LGVLTACSHGGLVDEGLRYYETMTKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNSI 584

Query: 516 --ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME 550
             ADPV    W SL+A   I+ +  E  +L    +ME
Sbjct: 585 FHADPV---IWRSLLASCRIHRD-LERGQLVANRIME 617



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 94/412 (22%), Positives = 178/412 (43%), Gaps = 45/412 (10%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S VF  N  ++   K G + EA ++F    +++ V++NS++S Y + G   +  ++F  M
Sbjct: 142 SGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMM 201

Query: 73  PQRNLVSWNSMIAGYL------HNDKVKEARE-----LFDKMFRPDLFSWALMITCYTRK 121
            +R  +  NS   G +        D   +  E     +       D+F  + MI  Y +K
Sbjct: 202 -RRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKK 260

Query: 122 GELEKARELFDLLPNKEDTACWNAMVAGYAK----IGN--YNEAKKLLDAMPSKNI---- 171
           G L +A  LF  +  + +   +N M+AG+ +    IG    +EA  L   + S+ +    
Sbjct: 261 GALVEAAALFRSV-QEPNVVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTE 319

Query: 172 VSWNSM-----LSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
            +++S+     L+GY + G+           +E D +  + ++D Y     ++  ++ F+
Sbjct: 320 FTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIG-SALIDLYFNSGCMEDGFRCFR 378

Query: 227 KIPEQNVVSWVTMLSGYARNGRMLEARRLF----------DQMPIRNVVAWNAMIAAYVQ 276
             P+ ++V+W  M+SG  +N    +A  LF          D   I +V+   A +A    
Sbjct: 379 SSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARA 438

Query: 277 RGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGY 336
             QI+  A       +R  V   + +  Y R   +D A R   +M   ++ + +A+IS +
Sbjct: 439 GEQIQCFATK--SGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCH 496

Query: 337 VQNKRMDEANQIFDKIGTHDVVCWNVMIKGY----AQCGRMDEAINLFRQMV 384
            Q+    +A   FD++    VV   +   G     +  G +DE +  +  M 
Sbjct: 497 AQHGCARDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYYETMT 548



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 86/198 (43%), Gaps = 16/198 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +    +SG V+ A + F +M   + V+++++IS +A++G   DA   F++M    +V
Sbjct: 459 NSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVV 518

Query: 79  SWNSMIAGYL----HNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARE 129
                  G L    H   V E    ++ M +     P +     ++    R G L  A  
Sbjct: 519 PNEITFLGVLTACSHGGLVDEGLRYYETMTKDYGLSPTIKHCTCVVDLLGRAGRLADAEA 578

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNE-----AKKLLDAMPSKNIVSWNSMLSGYTKN 184
                    D   W +++A   +I    E     A ++++  P+ +  S+  + + Y   
Sbjct: 579 FISNSIFHADPVIWRSLLAS-CRIHRDLERGQLVANRIMELEPTSS-ASYVILYNMYLDA 636

Query: 185 GEMHLASKFFEAMEERDV 202
           GE+ LASK  + M++R V
Sbjct: 637 GELSLASKTRDLMKQRGV 654


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 200/744 (26%), Positives = 366/744 (49%), Gaps = 65/744 (8%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL--- 108
           +I +YA+ G    ++++F+  P+ +   W  +I  Y+     +EA  L+ +M   D    
Sbjct: 39  LIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQI 98

Query: 109 --FSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLL 163
             F +  ++   +  G+L    ++   +     + D     +++  Y ++   ++A K  
Sbjct: 99  SNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAF 158

Query: 164 DAMPSKNIVSWNSMLSGYTKNGE----MHLASKFFEAMEERDVVSWNLMLDGYVELDDLD 219
           D MP +++V+W+S++  + +NG+    + + S+      E D V+   + +   EL  L 
Sbjct: 159 DTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLR 218

Query: 220 SAWKFFQKIPEQNVVSWVTM----LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
                   +  + + S  ++    +  Y + G +  A RLF+ +P R    W  MI+ Y 
Sbjct: 219 LGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYN 278

Query: 276 QRGQIEEAARLFIEMPE----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ-- 329
           Q G  +EA  +F +M E     N V+   ++    R+ ++ E R +   +  + +  +  
Sbjct: 279 QSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELD 338

Query: 330 ---TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
               A++  Y     + + +++F+ I    ++ WN +I  + + G+ +EA+ LF QM  +
Sbjct: 339 FLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQ 398

Query: 387 DIV--------------------------------------TWNTMIAGYAQIRQMDDAV 408
            ++                                        N +I  YA+   +  A 
Sbjct: 399 GLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFVQNALIDMYAKCGFVHSAN 458

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
           K+FE++ K ++ V+WN++I GF QN + ++A+ +F  M     K D  T    + AC+HL
Sbjct: 459 KMFEKI-KEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHL 517

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
             L+ G+ +HH  I  G   D ++  +L  MY+KCG +Q A  +F       ++SW+ +I
Sbjct: 518 GYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMI 577

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI 588
           AGY ++G     I LF +M+  G+ P+ +TF+ +LSACSH G V+ G   F  M+E + +
Sbjct: 578 AGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSE-FGV 636

Query: 589 EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVE 648
           EP  +H+ACM+DLLSRAG L+ A++++  +    N+ IWG LL  CR+H+ I + +   +
Sbjct: 637 EPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEK 696

Query: 649 KLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFL 708
            L +++   T  Y LLSN++AE G WD+  KVR  M+  G +K PG S IE+  +I+ F 
Sbjct: 697 NLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFG 756

Query: 709 SGDPKQCRTAEICNTLKTLAAQIR 732
            GD    +T +I   L+   + + 
Sbjct: 757 PGDTSHSQTKDIYRFLENFRSLVH 780



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 174/358 (48%), Gaps = 13/358 (3%)

Query: 284 ARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMD 343
           A LFI    R+P + T +I+ Y +I   + ++R+ D  P  +      +I  YV     +
Sbjct: 22  AHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFE 81

Query: 344 EANQIFDKIGTHDVV-----CWNVMIKGYAQCGRMDEAINLFRQMVN----KDIVTWNTM 394
           EA  ++ ++   D        +  ++K  +  G +     +  +++      D V   ++
Sbjct: 82  EAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSL 141

Query: 395 IAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
           +  Y ++  +DDA K F+ M   R+ V+W++++  F+QN    + L +F  M  E  + D
Sbjct: 142 LCMYGEMSCLDDACKAFDTM-PIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPD 200

Query: 455 HSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
             T+     AC+ L +L+LGR +H   ++    ++  + NSLI MY K G + +AE LF+
Sbjct: 201 SVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFE 260

Query: 515 DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574
           +        W  +I+ Y  +G   EA+ +F +M    + P+ VT +GVL AC+ +G V  
Sbjct: 261 NVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKE 320

Query: 575 GLKLFECMTEVYAIEPLVEHYA-CMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           G  +   +    A++P ++     +++L +  G L +  ++ + +K K     W TL+
Sbjct: 321 GRSVHGFVIR-RAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILS-WNTLI 376



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 104/458 (22%), Positives = 196/458 (42%), Gaps = 86/458 (18%)

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           R+  A   +I +Y Q G  E + R+F   P+ +   W  +I  YV     +EA  L  +M
Sbjct: 31  RHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEM 90

Query: 322 PYK----------------------------------------NIAAQTAMISGYVQNKR 341
            Y+                                        +   +T+++  Y +   
Sbjct: 91  VYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSC 150

Query: 342 MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVTW------ 391
           +D+A + FD +   DVV W+ ++  + Q G+  E +++F QM+++    D VT       
Sbjct: 151 LDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEA 210

Query: 392 -----------------------------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
                                        N++I  Y ++  +  A ++FE +   R T  
Sbjct: 211 CSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENV-PCRMTAP 269

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482
           W  +IS + Q+    +AL +F  M +   + +  T+   L ACA L  ++ GR +H   I
Sbjct: 270 WTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVI 329

Query: 483 KSGYVNDL-FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
           +     +L F+G +L+ +YA  G +++   +F+      ++SWN+LI+ +  NG   EA+
Sbjct: 330 RRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEAL 389

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601
            LF +M  +G+ PD  +    LSAC  +     G ++   + +       V++   +ID+
Sbjct: 390 LLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFVQN--ALIDM 447

Query: 602 LSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
            ++ G +  A +M + +K K +   W +++  C   QN
Sbjct: 448 YAKCGFVHSANKMFEKIKEK-SLVTWNSMI--CGFSQN 482



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 115/244 (47%), Gaps = 18/244 (7%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM--- 72
           F QN  I    K G V  A K+F ++ +K+ VT+NSMI  +++NG   +A  LF+QM   
Sbjct: 439 FVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMN 498

Query: 73  -PQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKA 127
             + + +++ S+I    H   +++ + +  K+     R D +    +   Y++ GEL+ A
Sbjct: 499 CVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMA 558

Query: 128 RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTK 183
             +FD +  +   + W+ M+AGY   G  N    L + M    I    +++  +LS  + 
Sbjct: 559 HGVFDRMSERSIVS-WSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSH 617

Query: 184 NGEMHLASKFFEAMEERDVVS----WNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSWVT 238
            G +     +F +M E  V      +  M+D      DL+ A++    +P   N   W  
Sbjct: 618 AGAVEEGKLYFNSMSEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGA 677

Query: 239 MLSG 242
           +L+G
Sbjct: 678 LLNG 681



 Score = 40.4 bits (93), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 1/104 (0%)

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
           Q+H     +G          LI  YA+ G  ++++ +F      D   W  LI  Y   G
Sbjct: 19  QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGG 78

Query: 536 NATEAIKLFEEMVMEG-VAPDPVTFIGVLSACSHVGLVDGGLKL 578
              EA+ L+ EMV +         F  VL ACS  G +  G K+
Sbjct: 79  FFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKV 122


>gi|345505226|gb|AEN99837.1| chlororespiratory reduction 4, partial [Lobularia maritima]
          Length = 570

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 175/472 (37%), Positives = 278/472 (58%), Gaps = 7/472 (1%)

Query: 242 GYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTM 301
           G+A+ G  +    L   +   ++   N +I  Y++   +  A ++F  MP+R+ VS+ +M
Sbjct: 99  GFAKEGMQIHGF-LTKTVICSDLFLQNCLIGLYIKCSCLGYARQVFDRMPQRDSVSYNSM 157

Query: 302 IDGYVRIAKLDEARRLLDQMPY--KNIAAQTAMISGYVQNKR-MDEANQIFDKIGTHDVV 358
           IDGYV+   ++ AR L D MP   KN+ +  +MI GY Q +  +D A+++F ++   D++
Sbjct: 158 IDGYVKCGLIESARELFDLMPKEKKNLISWNSMIGGYAQREDGVDIASKLFAEMPEKDLI 217

Query: 359 CWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRR 418
            WN +I GY + GR+++A  LF  M  +D+VTW TMI GYA++  +  A  +F+ M   R
Sbjct: 218 SWNSLIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHKAKSLFDVM-PHR 276

Query: 419 NTVSWNALISGFLQNEFHLDALKIFVLMTQEGK-KADHSTLACALSACAHLAALQLGRQI 477
           + V++N+++ G++QN++H++AL++F  M +E     D +TL   LSA A L  L     I
Sbjct: 277 DVVAYNSMMGGYVQNKYHMEALEVFYDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDI 336

Query: 478 HHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNA 537
           H   ++  ++ D  +G +LI MY+KCG IQ A  +F+  +   +  WN++I G A++G  
Sbjct: 337 HLYIVEKRFLLDGKLGVALIDMYSKCGSIQQAMAVFEGIENKSIDHWNAMIGGLAVHGLG 396

Query: 538 TEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYAC 597
             A  +  E+    + PD +TF+GVL+ACSH GLV  GL  FE M   + IEP ++HY C
Sbjct: 397 EAAFDMLMEIEKRFIKPDYITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGC 456

Query: 598 MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAV-EKLSELEPQ 656
           M+DLL+R+G ++ A  ++  M I+PN  IW T L AC  H+  +   + V E L      
Sbjct: 457 MVDLLARSGSIELAKHLISEMPIEPNDVIWRTFLNACSHHKEFETRELVVAENLILQAGY 516

Query: 657 KTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFL 708
             S Y LLSNM+A    W++V +VR  M+    +K PGCSWIE+  ++H FL
Sbjct: 517 NPSSYVLLSNMYASFEMWEDVRRVRTMMKERKIEKVPGCSWIELDGKVHEFL 568



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 101/293 (34%), Positives = 160/293 (54%), Gaps = 13/293 (4%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F QN  I    K   +  A ++F +M Q+++V+YNSMI  Y K G +  AR+LF+ M
Sbjct: 118 SDLFLQNCLIGLYIKCSCLGYARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLM 177

Query: 73  P--QRNLVSWNSMIAGYLH-NDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARE 129
           P  ++NL+SWNSMI GY    D V  A +LF +M   DL SW  +I  Y + G +E A+ 
Sbjct: 178 PKEKKNLISWNSMIGGYAQREDGVDIASKLFAEMPEKDLISWNSLIDGYVKHGRIEDAKG 237

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           LFD++P + D   W  M+ GYAK+G  ++AK L D MP +++V++NSM+ GY +N     
Sbjct: 238 LFDVMP-RRDVVTWATMIDGYAKLGFVHKAKSLFDVMPHRDVVAYNSMMGGYVQNKYHME 296

Query: 190 ASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV----SWVTML 240
           A + F  ME+      D  +  ++L    +L  L  A      I E+  +      V ++
Sbjct: 297 ALEVFYDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIVEKRFLLDGKLGVALI 356

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
             Y++ G + +A  +F+ +  +++  WNAMI      G  E A  + +E+ +R
Sbjct: 357 DMYSKCGSIQQAMAVFEGIENKSIDHWNAMIGGLAVHGLGEAAFDMLMEIEKR 409



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 178/354 (50%), Gaps = 38/354 (10%)

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           +L   N +I  Y+    +  AR++FD+M + D  S+  MI  Y + G +E ARELFDL+P
Sbjct: 119 DLFLQNCLIGLYIKCSCLGYARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMP 178

Query: 136 N-KEDTACWNAMVAGYA-KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
             K++   WN+M+ GYA +    + A KL   MP K+++SWNS++ GY K+G +  A   
Sbjct: 179 KEKKNLISWNSMIGGYAQREDGVDIASKLFAEMPEKDLISWNSLIDGYVKHGRIEDAKGL 238

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEAR 253
           F+ M  RDVV+W  M+DGY +L  +  A   F  +P ++VV++ +M+ GY +N   +EA 
Sbjct: 239 FDVMPRRDVVTWATMIDGYAKLGFVHKAKSLFDVMPHRDVVAYNSMMGGYVQNKYHMEAL 298

Query: 254 RLFDQMPIRNVVAWNA-----MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRI 308
            +F  M   + ++ +      +++A  Q G++ +A  + + + E+       ++DG + +
Sbjct: 299 EVFYDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIVEKR-----FLLDGKLGV 353

Query: 309 AKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
                                 A+I  Y +   + +A  +F+ I    +  WN MI G A
Sbjct: 354 ----------------------ALIDMYSKCGSIQQAMAVFEGIENKSIDHWNAMIGGLA 391

Query: 369 QCGRMDEAINLF----RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRR 418
             G  + A ++     ++ +  D +T+  ++   +    + + +  FE M ++ 
Sbjct: 392 VHGLGEAAFDMLMEIEKRFIKPDYITFVGVLNACSHSGLVKEGLLCFELMRRKH 445



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/274 (34%), Positives = 150/274 (54%), Gaps = 27/274 (9%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF--RPD 107
           N +I  Y K   +  AR++F++MPQR+ VS+NSMI GY+    ++ ARELFD M   + +
Sbjct: 124 NCLIGLYIKCSCLGYARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMPKEKKN 183

Query: 108 LFSWALMITCYT-RKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           L SW  MI  Y  R+  ++ A +LF  +P K D   WN+++ GY K G   +AK L D M
Sbjct: 184 LISWNSMIGGYAQREDGVDIASKLFAEMPEK-DLISWNSLIDGYVKHGRIEDAKGLFDVM 242

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
           P +++V+W +M+ GY K G +H A   F+ M  RDVV++N M+ GYV+      A + F 
Sbjct: 243 PRRDVVTWATMIDGYAKLGFVHKAKSLFDVMPHRDVVAYNSMMGGYVQNKYHMEALEVFY 302

Query: 227 KIPEQNVVS-----WVTMLSGYARNGRM----------LEARRLFD-QMPIRNVVAWNAM 270
            + +++ +S      V +LS  A+ GR+          +E R L D ++ +       A+
Sbjct: 303 DMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIVEKRFLLDGKLGV-------AL 355

Query: 271 IAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDG 304
           I  Y + G I++A  +F  +  ++   W  MI G
Sbjct: 356 IDMYSKCGSIQQAMAVFEGIENKSIDHWNAMIGG 389



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 166/339 (48%), Gaps = 54/339 (15%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQM--SQKNTVTYNSMISAYA-KNGRVNDARKLFEQMPQR 75
           N  I    K G +E A ++F  M   +KN +++NSMI  YA +   V+ A KLF +MP++
Sbjct: 155 NSMIDGYVKCGLIESARELFDLMPKEKKNLISWNSMIGGYAQREDGVDIASKLFAEMPEK 214

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           +L+SWNS+I GY+ + ++++A+ LFD M R D+ +WA MI  Y + G + KA+ LFD++P
Sbjct: 215 DLISWNSLIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHKAKSLFDVMP 274

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN------------------------- 170
           ++ D   +N+M+ GY +   + EA ++   M  ++                         
Sbjct: 275 HR-DVVAYNSMMGGYVQNKYHMEALEVFYDMEKESHLSPDETTLVIVLSAIAQLGRLSKA 333

Query: 171 ------IVSWNSMLSG---------YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
                 IV    +L G         Y+K G +  A   FE +E + +  WN M+ G    
Sbjct: 334 VDIHLYIVEKRFLLDGKLGVALIDMYSKCGSIQQAMAVFEGIENKSIDHWNAMIGGLAVH 393

Query: 216 DDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA----- 266
              ++A+    +I ++    + +++V +L+  + +G + E    F+ M  ++ +      
Sbjct: 394 GLGEAAFDMLMEIEKRFIKPDYITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQH 453

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMIDG 304
           +  M+    + G IE A  L  EMP E N V W T ++ 
Sbjct: 454 YGCMVDLLARSGSIELAKHLISEMPIEPNDVIWRTFLNA 492


>gi|147765658|emb|CAN78103.1| hypothetical protein VITISV_043511 [Vitis vinifera]
          Length = 1849

 Score =  332 bits (851), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 212/696 (30%), Positives = 357/696 (51%), Gaps = 51/696 (7%)

Query: 43   QKNTVTYNSMISAYAKNGRV-NDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFD 101
            + +T+  N++IS YAK G V +DA   F ++  +++VSWN++IAG+  N   +EA +LF 
Sbjct: 1105 ESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFH 1164

Query: 102  KMFR-PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
             M + P   ++A + +       LE+                     AGY + G      
Sbjct: 1165 AMLKGPIQPNYATIASILPVCASLEEN--------------------AGY-RYGKEVHCH 1203

Query: 161  KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
             L      +++   NS++S Y +  +M  A   F  M+ RD+VSWN ++ GY    +   
Sbjct: 1204 VLRRMELVEDVSVINSLMSFYLRIXQMEKAEFLFRNMKSRDLVSWNAIIAGYASNGEWLK 1263

Query: 221  AWKFFQKIP-----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR------NVVAWNA 269
            A + F +       + + V+ V++L   A    +  A+ +   + IR      +    NA
Sbjct: 1264 ALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYI-IRHPGLREDTSVGNA 1322

Query: 270  MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
            +++ Y +    + A + F+ +  ++ +SW  ++D +           LL  M  + I   
Sbjct: 1323 LLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLVNLLHWMLREGIRPD 1382

Query: 330  TAMISGYVQN-------KRMDEANQIFDKIG----THDVVCWNVMIKGYAQCGRMDEAIN 378
            +  I   +Q        K++ E +    + G           N M+  YA+CG M  A+N
Sbjct: 1383 SITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQGDAXPTLGNGMLDAYAKCGNMKYAVN 1442

Query: 379  LFRQMVNK-DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHL 437
            +F  +  K ++VT N+MI+GY      DDA  IF  M +  +  +WN ++  + +N+F  
Sbjct: 1443 IFGSLSEKRNVVTCNSMISGYVTSSSHDDAYAIFNTMSET-DLTTWNLMVRVYAENDFPD 1501

Query: 438  DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
             AL +F  +  +G K D  T+   L ACAH+A++ + RQ H   I++ + ND+ +  + I
Sbjct: 1502 QALSLFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHGYVIRACF-NDVRLNGAFI 1560

Query: 498  TMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
             MY+KCG +  A  LF  +   D++ + +++ G+A++G   EA+++F  M+  GV PD V
Sbjct: 1561 DMYSKCGSVFGAYKLFLSSPQKDLVMFTAMVGGFAMHGMGEEALRIFSYMLELGVKPDHV 1620

Query: 558  TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKG 617
                VL ACSH GLVD G K+F  + +V+  +P +E YAC++DLL+R GR+ +A+  V  
Sbjct: 1621 IITAVLFACSHAGLVDEGWKIFNSIEKVHGFQPTMEQYACVVDLLARGGRIKDAYTFVTR 1680

Query: 618  MKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEV 677
            M I+ NA IWGTLLGACR H  ++LGR+  + L ++E      Y ++SN++A   RWD V
Sbjct: 1681 MPIEANANIWGTLLGACRTHHEVELGRVVADHLFKIESDNIGNYVVMSNLYAADARWDGV 1740

Query: 678  EKVRVSMEGSGAQKQPGCSWIEV--KNQIHTFLSGD 711
             ++R  M     +K  GCSWIEV  +  + +F  G+
Sbjct: 1741 MEIRRLMRTRELKKPAGCSWIEVGRRKNMGSFQKGN 1776



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 189/389 (48%), Gaps = 25/389 (6%)

Query: 208  MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR-NGRMLEARRLFDQMPIRNVVA 266
            +L+ Y +   LD   K F ++ +++ V W  +LSG A       E  RLF  M + N   
Sbjct: 1012 LLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAK 1071

Query: 267  WNAMIAAYVQR--GQIEEAARLFIEMP------ERNPVSWTTMIDGYVRIAKL-DEARRL 317
             N++  A V     ++ E A   +         E + ++   +I  Y +   +  +A   
Sbjct: 1072 PNSVTIAIVLPVCARLREDAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAA 1131

Query: 318  LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD------------KIGTHDVVCWNVMIK 365
             +++ +K++ +  A+I+G+ +NK  +EA ++F              I +   VC ++   
Sbjct: 1132 FNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEEN 1191

Query: 366  GYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
               + G+      L R  + +D+   N++++ Y +I QM+ A  +F  M K R+ VSWNA
Sbjct: 1192 AGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIXQMEKAEFLFRNM-KSRDLVSWNA 1250

Query: 426  LISGFLQNEFHLDALKIFV-LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK- 483
            +I+G+  N   L AL++F   ++ E  K D  TL   L ACAH+  LQ+ + IH   I+ 
Sbjct: 1251 IIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRH 1310

Query: 484  SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
             G   D  VGN+L++ YAKC   Q A   F      D+ISWN+++  +  +G  T  + L
Sbjct: 1311 PGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLVNL 1370

Query: 544  FEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
               M+ EG+ PD +T + ++   + V  V
Sbjct: 1371 LHWMLREGIRPDSITILTIIQYYAAVSRV 1399



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 8/228 (3%)

Query: 398  YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH-LDALKIFVLMTQEGK-KADH 455
            YA+   +D   K+F EM  +R+ V WN ++SG    + H  + +++F  M    + K + 
Sbjct: 1016 YAKSGALDYCNKLFGEM-DQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAKPNS 1074

Query: 456  STLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI-QNAELLFK 514
             T+A  L  CA L     G+ +H   IKSG  +    GN+LI+MYAKCG +  +A   F 
Sbjct: 1075 VTIAIVLPVCARLRE-DAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFN 1133

Query: 515  DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574
              +  DV+SWN++IAG++ N    EA KLF  M+   + P+  T   +L  C+ +    G
Sbjct: 1134 RIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAG 1193

Query: 575  GLKLFECMTEVYAIEPLVEHYACMIDLLS---RAGRLDEAFEMVKGMK 619
                 E    V     LVE  + +  L+S   R  ++++A  + + MK
Sbjct: 1194 YRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIXQMEKAEFLFRNMK 1241



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 146/337 (43%), Gaps = 31/337 (9%)

Query: 19   NKKITQLGKSGRVEEAIKIFSQMSQK-NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
            N  +    K G ++ A+ IF  +S+K N VT NSMIS Y  +   +DA  +F  M + +L
Sbjct: 1425 NGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVTSSSHDDAYAIFNTMSETDL 1484

Query: 78   VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDL 133
             +WN M+  Y  ND   +A  LF ++     +PD+ +   ++        +   R+    
Sbjct: 1485 TTWNLMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHGY 1544

Query: 134  LPNKEDTACWN------AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
            +      AC+N      A +  Y+K G+   A KL  + P K++V + +M+ G+  +G  
Sbjct: 1545 VIR----ACFNDVRLNGAFIDMYSKCGSVFGAYKLFLSSPQKDLVMFTAMVGGFAMHGMG 1600

Query: 188  HLASKFFEAMEERDVVSWNLMLDGYV----ELDDLDSAWKFFQKIP-----EQNVVSWVT 238
              A + F  M E  V   ++++   +        +D  WK F  I      +  +  +  
Sbjct: 1601 EEALRIFSYMLELGVKPDHVIITAVLFACSHAGLVDEGWKIFNSIEKVHGFQPTMEQYAC 1660

Query: 239  MLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEA---ARLFIEMPERN 294
            ++   AR GR+ +A     +MPI  N   W  ++ A     ++E     A    ++   N
Sbjct: 1661 VVDLLARGGRIKDAYTFVTRMPIEANANIWGTLLGACRTHHEVELGRVVADHLFKIESDN 1720

Query: 295  PVSWTTMIDGYVRIAKLD---EARRLLDQMPYKNIAA 328
              ++  M + Y   A+ D   E RRL+     K  A 
Sbjct: 1721 IGNYVVMSNLYAADARWDGVMEIRRLMRTRELKKPAG 1757



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 108/470 (22%), Positives = 186/470 (39%), Gaps = 106/470 (22%)

Query: 30   RVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM-------PQR-NLVS-- 79
            ++E+A  +F  M  ++ V++N++I+ YA NG    A +LF +        P    LVS  
Sbjct: 1229 QMEKAEFLFRNMKSRDLVSWNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVL 1288

Query: 80   -------------------------------WNSMIAGYLHNDKVKEARELFDKMFRPDL 108
                                            N++++ Y   +  + A + F  + R DL
Sbjct: 1289 PACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDL 1348

Query: 109  FSWALMITCYTRKG-----------------------------------ELEKAREL--- 130
             SW  ++  +T  G                                    ++K +E    
Sbjct: 1349 ISWNAILDAFTESGCETHLVNLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSY 1408

Query: 131  ---FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK-NIVSWNSMLSGYTKNGE 186
               F LL         N M+  YAK GN   A  +  ++  K N+V+ NSM+SGY  +  
Sbjct: 1409 SIRFGLLQGDAXPTLGNGMLDAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVTSSS 1468

Query: 187  MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSG 242
               A   F  M E D+ +WNLM+  Y E D  D A   F ++  Q    ++V+ +++L  
Sbjct: 1469 HDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPA 1528

Query: 243  YARNGRMLEARRLFDQMPIR---NVVAWN-AMIAAYVQRGQIEEAARLFIEMPERNPVSW 298
             A    +   R+    + IR   N V  N A I  Y + G +  A +LF+  P+++ V +
Sbjct: 1529 CAHMASVHMLRQCHGYV-IRACFNDVRLNGAFIDMYSKCGSVFGAYKLFLSSPQKDLVMF 1587

Query: 299  TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIGT 354
            T M+ G+      +EA R+   M    +       TA++        +DE  +IF+ I  
Sbjct: 1588 TAMVGGFAMHGMGEEALRIFSYMLELGVKPDHVIITAVLFACSHAGLVDEGWKIFNSI-- 1645

Query: 355  HDVVCWNVMIKGY-------AQCGRMDEAINLFRQM-VNKDIVTWNTMIA 396
              V  +   ++ Y       A+ GR+ +A     +M +  +   W T++ 
Sbjct: 1646 EKVHGFQPTMEQYACVVDLLARGGRIKDAYTFVTRMPIEANANIWGTLLG 1695



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 4/140 (2%)

Query: 434  EFHLDALKIFV--LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLF 491
            E H +AL +F+  +    G K +   LA  L +C   +A++ G  +H  A+K G+V+   
Sbjct: 948  EKHDEALSLFLERVRCSVGYKPNGQILAALLKSCVAXSAIRFGSVLHGYALKLGHVSCQS 1007

Query: 492  VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYA-INGNATEAIKLFEEMVME 550
            +   L+ +YAK G +     LF + D  D + WN +++G A    +  E ++LF  M M 
Sbjct: 1008 LCKGLLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMV 1067

Query: 551  GVA-PDPVTFIGVLSACSHV 569
              A P+ VT   VL  C+ +
Sbjct: 1068 NEAKPNSVTIAIVLPVCARL 1087


>gi|242038427|ref|XP_002466608.1| hypothetical protein SORBIDRAFT_01g010975 [Sorghum bicolor]
 gi|241920462|gb|EER93606.1| hypothetical protein SORBIDRAFT_01g010975 [Sorghum bicolor]
          Length = 752

 Score =  332 bits (851), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 196/605 (32%), Positives = 329/605 (54%), Gaps = 30/605 (4%)

Query: 109 FSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS 168
           F++  M++ + + G++  AR LFD +P K     +  MV    K G+  +A KL +  P 
Sbjct: 155 FTYDFMVSEHVKAGDIASARRLFDGMPEK-SVVSYTTMVDALMKRGSVKDAVKLYERCPL 213

Query: 169 KNIVSWNSMLSGYTKNGEMH-----LASKFFEAMEERDVVSWNLMLDGYVELDDLDSA-- 221
            ++  + +M++G+ +N E+H     +  K        +VV+   ++   V   + D A  
Sbjct: 214 YSVAFFTAMIAGFVRN-ELHKDAFPVFRKMLRCSVRPNVVTLICVIKACVGAGEFDLAMG 272

Query: 222 -------WKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
                  W  F+K  E +     ++++ Y R G    A R+FD M +R+VV+W A++  Y
Sbjct: 273 VVGLAIKWNLFEKSIEVHN----SLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVY 328

Query: 275 VQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK----NIAAQT 330
            + G +E A R+   MPERN VSW+T+I  + +     EA +L  QM  +    NI+  +
Sbjct: 329 AELGDLEGARRVLDAMPERNEVSWSTLIARHEQKGDSAEALKLYSQMLAEGCRPNISCFS 388

Query: 331 AMISGYVQNKRMDEANQIFD---KIGTHDVVCWNVM-IKGYAQCGRMDEAINLFRQMVNK 386
           +++S       +    +I     K+G    +  +   I  Y +C +  +A  +F  +  K
Sbjct: 389 SVLSACATLHDLRGGTRIHANALKMGFSSSLFVSSSLIDMYCKCKQCTDAQRIFNSLPEK 448

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446
           + V WN++I+GY+   +M +A ++F++M   RN  SWN +ISG+ +N    DAL  F  M
Sbjct: 449 NTVCWNSLISGYSWNGKMVEAEELFKKM-PARNAASWNTMISGYAENRRFGDALNYFCAM 507

Query: 447 TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI 506
              G+     TL+  L ACA+L +L++G+ +H   +K G  +++F+G +L  MYAK G +
Sbjct: 508 LASGQIPGEITLSSVLLACANLCSLEMGKMVHAEIVKLGIEDNIFMGTALSDMYAKSGDL 567

Query: 507 QNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
            ++  +F      + I+W +++ G A NG A E+I LFE M+   +AP+  TF+ +L AC
Sbjct: 568 DSSRRMFYQMPEKNNITWTAMVQGLAENGFAEESILLFENMIANRIAPNEHTFLAILFAC 627

Query: 567 SHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGI 626
           SH GLV+  +  FE M + + I P  +HY CM+D+L+RAGRL EA E++  +  K +   
Sbjct: 628 SHCGLVEQAIHYFETM-QAHGIPPKDKHYTCMVDVLARAGRLPEAEELLMKVPSKLDTSS 686

Query: 627 WGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEG 686
           W +LL AC  ++N ++G  A +KL ELE   T+ Y LLSNM+A  G+W +  + R+ M+G
Sbjct: 687 WSSLLSACNTYRNKEIGERAAKKLHELEKDNTAGYVLLSNMYASCGKWKDAAETRILMQG 746

Query: 687 SGAQK 691
              +K
Sbjct: 747 PRLKK 751



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 134/541 (24%), Positives = 238/541 (43%), Gaps = 129/541 (23%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F  +  +++  K+G +  A ++F  M +K+ V+Y +M+ A  K G V DA KL+E+ P  
Sbjct: 155 FTYDFMVSEHVKAGDIASARRLFDGMPEKSVVSYTTMVDALMKRGSVKDAVKLYERCPLY 214

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFS--------------------- 110
           ++  + +MIAG++ N+  K+A  +F KM     RP++ +                     
Sbjct: 215 SVAFFTAMIAGFVRNELHKDAFPVFRKMLRCSVRPNVVTLICVIKACVGAGEFDLAMGVV 274

Query: 111 -----WAL----------MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGN 155
                W L          +IT Y R G+   A  +FD +  + D   W A++  YA++G+
Sbjct: 275 GLAIKWNLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVR-DVVSWTALLDVYAELGD 333

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDG 211
              A+++LDAMP +N VSW+++++ + + G+   A K +  M       ++  ++ +L  
Sbjct: 334 LEGARRVLDAMPERNEVSWSTLIARHEQKGDSAEALKLYSQMLAEGCRPNISCFSSVLSA 393

Query: 212 YVELDDL-----------------------------------DSAWKFFQKIPEQNVVSW 236
              L DL                                     A + F  +PE+N V W
Sbjct: 394 CATLHDLRGGTRIHANALKMGFSSSLFVSSSLIDMYCKCKQCTDAQRIFNSLPEKNTVCW 453

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------ 290
            +++SGY+ NG+M+EA  LF +MP RN  +WN MI+ Y +  +  +A   F  M      
Sbjct: 454 NSLISGYSWNGKMVEAEELFKKMPARNAASWNTMISGYAENRRFGDALNYFCAMLASGQI 513

Query: 291 P---------------------------------ERNPVSWTTMIDGYVRIAKLDEARRL 317
           P                                 E N    T + D Y +   LD +RR+
Sbjct: 514 PGEITLSSVLLACANLCSLEMGKMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRM 573

Query: 318 LDQMPYKNIAAQTAMISGYVQNKRMDEA-----NQIFDKIGTHDVVCWNVMIKGYAQCGR 372
             QMP KN    TAM+ G  +N   +E+     N I ++I  ++     ++    + CG 
Sbjct: 574 FYQMPEKNNITWTAMVQGLAENGFAEESILLFENMIANRIAPNEHTFLAILF-ACSHCGL 632

Query: 373 MDEAINLFRQMVNKDIVT----WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
           +++AI+ F  M    I      +  M+   A+  ++ +A ++  ++  + +T SW++L+S
Sbjct: 633 VEQAIHYFETMQAHGIPPKDKHYTCMVDVLARAGRLPEAEELLMKVPSKLDTSSWSSLLS 692

Query: 429 G 429
            
Sbjct: 693 A 693



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 155/319 (48%), Gaps = 25/319 (7%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K  +  +A +IF+ + +KNTV +NS+IS Y+ NG++ +A +LF++MP RN  SWN+MI+G
Sbjct: 431 KCKQCTDAQRIFNSLPEKNTVCWNSLISGYSWNGKMVEAEELFKKMPARNAASWNTMISG 490

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMIT---------CYTRKGELEKARELFDLLPNK 137
           Y  N +  +A   F  M         + ++         C    G++  A E+   L  +
Sbjct: 491 YAENRRFGDALNYFCAMLASGQIPGEITLSSVLLACANLCSLEMGKMVHA-EIVK-LGIE 548

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
           ++     A+   YAK G+ + ++++   MP KN ++W +M+ G  +NG    +   FE M
Sbjct: 549 DNIFMGTALSDMYAKSGDLDSSRRMFYQMPEKNNITWTAMVQGLAENGFAEESILLFENM 608

Query: 198 EERDVV----SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS----WVTMLSGYARNGRM 249
               +     ++  +L        ++ A  +F+ +    +      +  M+   AR GR+
Sbjct: 609 IANRIAPNEHTFLAILFACSHCGLVEQAIHYFETMQAHGIPPKDKHYTCMVDVLARAGRL 668

Query: 250 LEARRLFDQMPIR-NVVAWNAMIAA---YVQRGQIEEAARLFIEMPERNPVSWTTMIDGY 305
            EA  L  ++P + +  +W+++++A   Y  +   E AA+   E+ + N   +  + + Y
Sbjct: 669 PEAEELLMKVPSKLDTSSWSSLLSACNTYRNKEIGERAAKKLHELEKDNTAGYVLLSNMY 728

Query: 306 VRIAKLDEA--RRLLDQMP 322
               K  +A   R+L Q P
Sbjct: 729 ASCGKWKDAAETRILMQGP 747


>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
           [Vitis vinifera]
          Length = 807

 Score =  332 bits (851), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 205/659 (31%), Positives = 333/659 (50%), Gaps = 68/659 (10%)

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
           +D +  N+++  Y K G   +A ++ + MP  ++VSWN+M+SG+ K+ +   +  FF +M
Sbjct: 142 DDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLMFFRSM 201

Query: 198 EERDVVSWNLM--LDGYVELDDLDS----------AWKFFQKIPEQNVVSWVTMLSGYAR 245
                +  N +  +   +    L S            K    + E  V S + M   Y +
Sbjct: 202 VWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEM---YMK 258

Query: 246 NGRMLEARRLFDQM-----PIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PERN 294
            G +  A  +F+ +       RN V WN MI+ YV  G   +A  LFI+M      P+ +
Sbjct: 259 CGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYS 318

Query: 295 P-VSWTTMIDGYVRIAKLDEARRLLDQMPYKN-IAAQTAMISGYVQNKRMDEANQIFDKI 352
             VS  ++    + IA   +   L+ +   KN I  +TA++  Y++   M    +IF + 
Sbjct: 319 TMVSLFSLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRS 378

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----------------------------- 383
             H+++ W+ +I   AQ G   +A+ LF +                              
Sbjct: 379 QNHNLIMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKPEGM 438

Query: 384 ----------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433
                        D+   + ++  YA+ R M  + K+F  +  +++ VSWNALISG+ Q+
Sbjct: 439 QIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRL-SQKDLVSWNALISGYAQD 497

Query: 434 EFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG 493
           E   +ALK F  M  E  + +  T+AC LS CAHL+ + L +++H   I+ G  + + V 
Sbjct: 498 ECADEALKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYLIRQGLGSTVLVS 557

Query: 494 NSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA 553
           NSLI  YAKCG I ++   F+     + +SWNS+I G  ++    E I LF++MV  G+ 
Sbjct: 558 NSLIATYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSRTDEMIVLFDKMVASGIK 617

Query: 554 PDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFE 613
           PD VTF  +LSACSH G VD G K F+ M E + ++P +E Y CM+DLL RAG L++A++
Sbjct: 618 PDHVTFTAILSACSHAGRVDEGCKYFKSMVEDFNLKPQLEQYTCMVDLLGRAGHLNQAYD 677

Query: 614 MVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGR 673
           ++  M   P+  IWG+LLG+C+ H +  L  I    + +L P       LL+N++   G+
Sbjct: 678 LIMAMPCTPDDRIWGSLLGSCKNHGDEILAEIVANHIFKLVPSSVGYRVLLANLYENLGK 737

Query: 674 WDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
             E  KVR  ++  G +K+PGCSWIEV N  H F++GD    ++ EI   +++L  +I+
Sbjct: 738 GREGSKVRSEIKDMGLKKKPGCSWIEVDNNFHIFIAGDRSHSQSDEIYAAVESLTTEIK 796



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 114/518 (22%), Positives = 220/518 (42%), Gaps = 88/518 (16%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM------ 72
           N  +T   K G VE+A+++F +M + + V++N+MIS + K+     +   F  M      
Sbjct: 148 NSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLMFFRSMVWEFGI 207

Query: 73  -PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL----FSWALMITCYTRKGELEKA 127
            P R  V+  S I        +   RE+   + +  L    +  + +I  Y + G ++ A
Sbjct: 208 YPNR--VACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNA 265

Query: 128 RELFDLLPNKE----DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI-VSWNSMLSGYT 182
             +F+ + +K+    +   WN M++GY   G +++A  L   M    I   +++M+S ++
Sbjct: 266 ENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFS 325

Query: 183 KNGEM-------HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
              E         +    F+   + ++     +LD Y++  D+ +  K F++    N++ 
Sbjct: 326 LCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIM 385

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
           W  ++S  A++G   +A  LF +  + + +A + ++ A ++      A       PE   
Sbjct: 386 WSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLR------ACSSLTLKPEGMQ 439

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
           +       G+V                  ++   +A++  Y + + M  + ++F ++   
Sbjct: 440 IHGLATKMGFV-----------------SDVFVGSALVDLYAKCRDMGYSKKVFLRLSQK 482

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQM-------------------------------- 383
           D+V WN +I GYAQ    DEA+  FR M                                
Sbjct: 483 DLVSWNALISGYAQDECADEALKAFRDMQLEEIRPNTVTIACILSVCAHLSVMTLCKEVH 542

Query: 384 -------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
                  +   ++  N++IA YA+   ++ ++  FE+M   RN VSWN++I G   +   
Sbjct: 543 GYLIRQGLGSTVLVSNSLIATYAKCGDINSSLYTFEKM-PERNDVSWNSIILGMGMHSRT 601

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
            + + +F  M   G K DH T    LSAC+H   +  G
Sbjct: 602 DEMIVLFDKMVASGIKPDHVTFTAILSACSHAGRVDEG 639



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 112/222 (50%), Gaps = 19/222 (8%)

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADH-STLACALSACAHLAALQLGRQIHHLAI 482
           N +I  + ++ F  DA+ +++ M  +G K +      C + A   L  +  GRQIH   +
Sbjct: 77  NNVIREYTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGHVL 136

Query: 483 KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIK 542
           K G ++D+ V NSL+TMY KCG +++A  +F+    VD++SWN++I+G+  + + T ++ 
Sbjct: 137 KLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLM 196

Query: 543 LFEEMVME-GVAPDPVTFIGVLSACSHVGLVDGGLKLFECM------TEVYAIEPLVEHY 595
            F  MV E G+ P+ V  +  + +CS +  +  G ++   +       E Y +  L+E Y
Sbjct: 197 FFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMY 256

Query: 596 ACMIDLLSRAGRLDEAFEMVKGM----KIKPNAGIWGTLLGA 633
                   + G +  A  +   +     ++ NA IW  ++  
Sbjct: 257 M-------KCGSIKNAENIFNSILDKDSVRRNAVIWNVMISG 291



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 110/227 (48%), Gaps = 16/227 (7%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           ++++  YAK   +  ++K+F ++ Q++LVSWN++I+GY  ++   EA + F  M     R
Sbjct: 457 SALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQDECADEALKAFRDMQLEEIR 516

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKL 162
           P+  + A +++       +   +E+   L  +         N+++A YAK G+ N +   
Sbjct: 517 PNTVTIACILSVCAHLSVMTLCKEVHGYLIRQGLGSTVLVSNSLIATYAKCGDINSSLYT 576

Query: 163 LDAMPSKNIVSWNSMLSG---YTKNGEM-HLASKFFEAMEERDVVSWNLMLDGYVELDDL 218
            + MP +N VSWNS++ G   +++  EM  L  K   +  + D V++  +L        +
Sbjct: 577 FEKMPERNDVSWNSIILGMGMHSRTDEMIVLFDKMVASGIKPDHVTFTAILSACSHAGRV 636

Query: 219 DSAWKFFQKIPEQ-----NVVSWVTMLSGYARNGRMLEARRLFDQMP 260
           D   K+F+ + E       +  +  M+    R G + +A  L   MP
Sbjct: 637 DEGCKYFKSMVEDFNLKPQLEQYTCMVDLLGRAGHLNQAYDLIMAMP 683



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 15/153 (9%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           NS+I+ YAK G +N +   FE+MP+RN VSWNS+I G   + +  E   LFDKM     +
Sbjct: 558 NSLIATYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSRTDEMIVLFDKMVASGIK 617

Query: 106 PDLFSWALMITCYTRKGELEKA-------RELFDLLPNKEDTACWNAMVAGYAKIGNYNE 158
           PD  ++  +++  +  G +++         E F+L P  E   C   MV    + G+ N+
Sbjct: 618 PDHVTFTAILSACSHAGRVDEGCKYFKSMVEDFNLKPQLEQYTC---MVDLLGRAGHLNQ 674

Query: 159 AKKLLDAMP-SKNIVSWNSMLSGYTKNGEMHLA 190
           A  L+ AMP + +   W S+L     +G+  LA
Sbjct: 675 AYDLIMAMPCTPDDRIWGSLLGSCKNHGDEILA 707



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 9/153 (5%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS V   N  I    K G +  ++  F +M ++N V++NS+I     + R ++   LF++
Sbjct: 551 GSTVLVSNSLIATYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSRTDEMIVLFDK 610

Query: 72  MPQRNL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKG 122
           M    +    V++ ++++   H  +V E  + F  M      +P L  +  M+    R G
Sbjct: 611 MVASGIKPDHVTFTAILSACSHAGRVDEGCKYFKSMVEDFNLKPQLEQYTCMVDLLGRAG 670

Query: 123 ELEKARELFDLLPNKEDTACWNAMVAGYAKIGN 155
            L +A +L   +P   D   W +++      G+
Sbjct: 671 HLNQAYDLIMAMPCTPDDRIWGSLLGSCKNHGD 703


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  332 bits (850), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 176/512 (34%), Positives = 289/512 (56%), Gaps = 17/512 (3%)

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ER 293
           ++L  Y +   + +AR +FD++P   VV  +A+I+ + ++G+++E   LF +      E 
Sbjct: 114 SLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVEL 173

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
           N VSW  MI G+ R     +A  +   M  + +      +S  +    + + +     I 
Sbjct: 174 NLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVL--PAVGDLDMPLMGIQ 231

Query: 354 TH----------DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQ 403
            H          D    + +I  Y +C    E   +F +M   D+   N ++ G ++   
Sbjct: 232 IHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGL 291

Query: 404 MDDAVKIFEEM-GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
           +D+A+++F++  G   N VSW ++I+   QN   ++AL++F  M  EG K +  T+ C L
Sbjct: 292 VDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLL 351

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
            AC ++AAL  G+  H  ++++G  ND++VG++LI MYAKCGR+  + L F      +++
Sbjct: 352 PACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLV 411

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           SWNSL+AGYA++G   EAI +FE M   G  PD V+F  VLSAC+  GL + G   F+ M
Sbjct: 412 SWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSM 471

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKL 642
           +  + +E  +EHY+CM+ LL R+GRL+EA+ M+K M  +P++ +WG LL +CR+H  + L
Sbjct: 472 SRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDL 531

Query: 643 GRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKN 702
           G IA +++ ELEP+    Y LLSN++A    W EV+ VR  M   G +K PG SWIE+KN
Sbjct: 532 GEIAAKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKN 591

Query: 703 QIHTFLSGDPKQCRTAEICNTLKTLAAQIRNT 734
           ++H  L+GD    +  +I   L  L  +++ +
Sbjct: 592 KVHMLLAGDSSHPQMPQIIEKLAKLTVEMKKS 623



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 107/447 (23%), Positives = 191/447 (42%), Gaps = 90/447 (20%)

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ-- 258
           D V  + +L  YV+ D L  A   F K+P+  VV+   ++S +AR GR+ E + LF Q  
Sbjct: 108 DSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTR 167

Query: 259 -MPIR-NVVAWNAMIAAYVQRGQIEEAARLFIEM------PERNPVS------------- 297
            + +  N+V+WN MI+ + + G   +A  +F  M      P+   VS             
Sbjct: 168 DLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPL 227

Query: 298 --------------------WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYV 337
                                + +ID Y + A   E   + ++M   ++ A  A+++G  
Sbjct: 228 MGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLS 287

Query: 338 QNKRMDEANQIFDKIGTHD--VVCWNVMIKGYAQCGRMDEAINLFRQM------------ 383
           +N  +D A ++F +    D  VV W  MI   +Q G+  EA+ LFR+M            
Sbjct: 288 RNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTI 347

Query: 384 ---------------------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
                                      +  D+   + +I  YA+  +M  A ++  +M  
Sbjct: 348 PCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRM-LASRLCFDMMP 406

Query: 417 RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG-R 475
            RN VSWN+L++G+  +    +A+ IF LM + G+K DH +  C LSAC      + G  
Sbjct: 407 NRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWF 466

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAI 533
               ++   G    +   + ++T+  + GR++ A  + K    +P D   W +L++   +
Sbjct: 467 YFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEP-DSCVWGALLSSCRV 525

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFI 560
           + N  +  ++  + V E    +P  +I
Sbjct: 526 H-NRVDLGEIAAKRVFELEPRNPGNYI 551



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 153/322 (47%), Gaps = 22/322 (6%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP--QRNLVS 79
           I   GK     E   +F++M + +    N++++  ++NG V++A ++F+Q      N+VS
Sbjct: 252 IDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVS 311

Query: 80  WNSMIAGYLHNDKVKEARELFDKM----FRPDLFSW-ALMITCYTRKGELE-KARELFDL 133
           W SMIA    N K  EA ELF +M     +P+  +   L+  C      L  KA   F L
Sbjct: 312 WTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSL 371

Query: 134 LPNK-EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
                 D    +A++  YAK G    ++   D MP++N+VSWNS+++GY  +G+   A  
Sbjct: 372 RNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAIN 431

Query: 193 FFEAM----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGY 243
            FE M    ++ D VS+  +L    +    +  W +F  +   + V      +  M++  
Sbjct: 432 IFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLL 491

Query: 244 ARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWT 299
            R+GR+ EA  +  QMP   +   W A++++     ++   E AA+   E+  RNP ++ 
Sbjct: 492 GRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPRNPGNYI 551

Query: 300 TMIDGYVRIAKLDEARRLLDQM 321
            + + Y   A   E   + D M
Sbjct: 552 LLSNIYASKAMWVEVDMVRDMM 573



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 103/422 (24%), Positives = 195/422 (46%), Gaps = 46/422 (10%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF---- 100
           ++V  +S++  Y +   + DAR +F+++PQ  +V+ +++I+ +    +VKE +ELF    
Sbjct: 108 DSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTR 167

Query: 101 DKMFRPDLFSWALMITCYTRKGELEKARELFD---LLPNKEDTACWNAMVAGYA------ 151
           D     +L SW  MI+ + R G    A  +F    L   K D    ++++          
Sbjct: 168 DLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPL 227

Query: 152 ---KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLM 208
              +I  Y   + L    P K +VS  +++  Y K       S  F  M+E DV + N +
Sbjct: 228 MGIQIHCYVIKQGL---GPDKFVVS--ALIDMYGKCACASEMSGVFNEMDEVDVGACNAL 282

Query: 209 LDGYVELDDLDSAWKFFQKIP--EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA 266
           + G      +D+A + F++    + NVVSW +M++  ++NG+ +EA  LF +M I  V  
Sbjct: 283 VTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKP 342

Query: 267 WNAMIAAYVQR-GQIE-----EAARLFIEMPERNPV-----SWTTMIDGYVRIAKLDEAR 315
            +  I   +   G I      +AA  F     RN +       + +ID Y +  ++  +R
Sbjct: 343 NSVTIPCLLPACGNIAALLHGKAAHCF---SLRNGIFNDVYVGSALIDMYAKCGRMLASR 399

Query: 316 RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD---KIGTH-DVVCWNVMIKGYAQCG 371
              D MP +N+ +  ++++GY  + +  EA  IF+   + G   D V +  ++    Q G
Sbjct: 400 LCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGG 459

Query: 372 RMDEAINLFRQM-----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNAL 426
             +E    F  M     V   +  ++ M+    +  ++++A  + ++M    ++  W AL
Sbjct: 460 LTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGAL 519

Query: 427 IS 428
           +S
Sbjct: 520 LS 521



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 103/425 (24%), Positives = 183/425 (43%), Gaps = 85/425 (20%)

Query: 30  RVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM----PQRNLVSWNSMIA 85
            +++A  +F ++ Q   VT +++IS +A+ GRV + ++LF Q      + NLVSWN MI+
Sbjct: 124 HLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMIS 183

Query: 86  GYLHNDKVKEARELFDKM----FRPDLFS---------------WALMITCYTRK----- 121
           G+  +    +A  +F  M     +PD  S                 + I CY  K     
Sbjct: 184 GFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGP 243

Query: 122 ------------GELEKARELFDLLP--NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP 167
                       G+   A E+  +    ++ D    NA+V G ++ G  + A ++     
Sbjct: 244 DKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFK 303

Query: 168 SK--NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDL--- 218
               N+VSW SM++  ++NG+   A + F  M+   V    V+   +L     +  L   
Sbjct: 304 GMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHG 363

Query: 219 DSAWKF-FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR 277
            +A  F  +     +V     ++  YA+ GRML +R  FD MP RN+V+WN+++A Y   
Sbjct: 364 KAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMH 423

Query: 278 GQIEEAARLFIEMPER-----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAM 332
           G+  EA  +F E+ +R     + VS+T ++    +    +E     D M  +N   +   
Sbjct: 424 GKTFEAINIF-ELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMS-RNHGVEA-- 479

Query: 333 ISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTW 391
                   RM+                ++ M+    + GR++EA  + +QM    D   W
Sbjct: 480 --------RMEH---------------YSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVW 516

Query: 392 NTMIA 396
             +++
Sbjct: 517 GALLS 521



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 114/262 (43%), Gaps = 68/262 (25%)

Query: 440 LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
           +++F  M  +G   D   L   +  CA L+ALQ G+Q+H  A+ SG   D  V +SL+ M
Sbjct: 59  IRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHM 118

Query: 500 Y-------------------------------AKCGRI-QNAELLFKDAD---PVDVISW 524
           Y                               A+ GR+ +  EL ++  D    ++++SW
Sbjct: 119 YVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSW 178

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMT- 583
           N +I+G+  +G+  +A+ +F+ M +EG+ PD  +   VL A   + +   G+++  C   
Sbjct: 179 NGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQI-HCYVI 237

Query: 584 ------EVYAIEPLVEHY---AC---------------------MIDLLSRAGRLDEAFE 613
                 + + +  L++ Y   AC                     ++  LSR G +D A E
Sbjct: 238 KQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALE 297

Query: 614 MVKGMK-IKPNAGIWGTLLGAC 634
           + K  K +  N   W +++ +C
Sbjct: 298 VFKQFKGMDLNVVSWTSMIASC 319


>gi|224071603|ref|XP_002303536.1| predicted protein [Populus trichocarpa]
 gi|222840968|gb|EEE78515.1| predicted protein [Populus trichocarpa]
          Length = 596

 Score =  332 bits (850), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 170/463 (36%), Positives = 269/463 (58%), Gaps = 43/463 (9%)

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMI 302
           Y++ G M  A+++FD++  +NVV+WN++++ +++ G + EA R+F ++ +++ +SW +MI
Sbjct: 169 YSKLGDMNTAQKVFDELAEKNVVSWNSILSGHLKSGNLLEAQRVFDQISKKDVISWNSMI 228

Query: 303 DGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNV 362
            GY +I  +D A  L  QMP KN ++  A+ISGYV    +  A + FD +   + V W  
Sbjct: 229 SGYAKIGDMDRACVLFQQMPEKNYSSWNALISGYVNCGDIKSAWRFFDAMPERNSVSWIT 288

Query: 363 MIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
           MI GY++CG +D A  LF Q+  KD++T+N MI+ +AQ  Q   A+ +F EM K    + 
Sbjct: 289 MIAGYSKCGDVDSASKLFDQIAKKDLLTFNAMISCFAQNSQPRKALWLFSEMLKAYANI- 347

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482
                                        + D  TLA  +SAC+ L  L+    I     
Sbjct: 348 -----------------------------QPDQMTLASVVSACSQLGDLRFASWIE---- 374

Query: 483 KSGYVNDLF------VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGN 536
              YVNDL       +  +L+ +YAKCG +  A  LF   +  DV++++++I+G  ING 
Sbjct: 375 --SYVNDLGTEIDDQLVTALLDLYAKCGSVDKAYELFHGLNKKDVVAYSAMISGCGINGK 432

Query: 537 ATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYA 596
             +AIKLF+ MV   + P+  TF G+L+AC+H GLV  G + F  M + + + P  +HYA
Sbjct: 433 VADAIKLFDMMVDAQIHPNLATFTGLLTACNHAGLVKEGYRFFSSMKD-HGLVPSTDHYA 491

Query: 597 CMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQ 656
            M+DLL RAGRL +A+E++K M ++P++G+WG LL AC +H N++LG IA +    LE  
Sbjct: 492 IMVDLLGRAGRLQDAYELIKSMPMQPHSGVWGALLLACNVHNNVELGEIAAQHCFNLETN 551

Query: 657 KTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
            T+ Y+LL+N+++ AGRWD+V ++R   +     K  GCSW E
Sbjct: 552 ATAYYSLLANIYSSAGRWDDVGRLRKLWKEKKLAKLSGCSWTE 594



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 111/399 (27%), Positives = 211/399 (52%), Gaps = 41/399 (10%)

Query: 30  RVEEAI-KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYL 88
           R+ + +  I   +   ++ ++   I  +++ G+  +A  L+ QM ++ L      ++  L
Sbjct: 72  RISQYVHSILYHLPHPDSFSWGWAIRYFSQQGQFKEALYLYVQMQRQGLCPSTFAVSSAL 131

Query: 89  HNDKVKEAR--------ELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
                   +        E +   F   ++    ++  Y++ G++  A+++FD L  K + 
Sbjct: 132 RAYARTTYKMGGMSIHAESYKYGFSNCVYVQTALVDLYSKLGDMNTAQKVFDELAEK-NV 190

Query: 141 ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER 200
             WN++++G+ K GN  EA+++ D +  K+++SWNSM+SGY K G+M  A   F+ M E+
Sbjct: 191 VSWNSILSGHLKSGNLLEAQRVFDQISKKDVISWNSMISGYAKIGDMDRACVLFQQMPEK 250

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
           +  SWN ++ GYV   D+ SAW+FF  +PE+N VSW+TM++GY++ G +  A +LFDQ+ 
Sbjct: 251 NYSSWNALISGYVNCGDIKSAWRFFDAMPERNSVSWITMIAGYSKCGDVDSASKLFDQIA 310

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
            ++++ +NAMI+ + Q  Q  +A  LF E           M+  Y  I          DQ
Sbjct: 311 KKDLLTFNAMISCFAQNSQPRKALWLFSE-----------MLKAYANIQP--------DQ 351

Query: 321 MPYKNIAAQTAMI-----SGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
           M   ++ +  + +     + ++++   D   +I D++ T        ++  YA+CG +D+
Sbjct: 352 MTLASVVSACSQLGDLRFASWIESYVNDLGTEIDDQLVT-------ALLDLYAKCGSVDK 404

Query: 376 AINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           A  LF  +  KD+V ++ MI+G     ++ DA+K+F+ M
Sbjct: 405 AYELFHGLNKKDVVAYSAMISGCGINGKVADAIKLFDMM 443



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/416 (25%), Positives = 202/416 (48%), Gaps = 58/416 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V+ Q   +    K G +  A K+F ++++KN V++NS++S + K+G + +A+++F+Q+ +
Sbjct: 159 VYVQTALVDLYSKLGDMNTAQKVFDELAEKNVVSWNSILSGHLKSGNLLEAQRVFDQISK 218

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           ++++SWNSMI+GY     +  A  LF +M   +  SW  +I+ Y   G+++ A   FD +
Sbjct: 219 KDVISWNSMISGYAKIGDMDRACVLFQQMPEKNYSSWNALISGYVNCGDIKSAWRFFDAM 278

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG--------- 185
           P + ++  W  M+AGY+K G+ + A KL D +  K+++++N+M+S + +N          
Sbjct: 279 PER-NSVSWITMIAGYSKCGDVDSASKLFDQIAKKDLLTFNAMISCFAQNSQPRKALWLF 337

Query: 186 -------------EMHLASKFFEAMEERDV--VSW-----------------NLMLDGYV 213
                        +M LAS      +  D+   SW                   +LD Y 
Sbjct: 338 SEMLKAYANIQPDQMTLASVVSACSQLGDLRFASWIESYVNDLGTEIDDQLVTALLDLYA 397

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM------PIRNVVAW 267
           +   +D A++ F  + +++VV++  M+SG   NG++ +A +LFD M      P  N+  +
Sbjct: 398 KCGSVDKAYELFHGLNKKDVVAYSAMISGCGINGKVADAIKLFDMMVDAQIHP--NLATF 455

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVS----WTTMIDGYVRIAKLDEARRLLDQM-- 321
             ++ A    G ++E  R F  M +   V     +  M+D   R  +L +A  L+  M  
Sbjct: 456 TGLLTACNHAGLVKEGYRFFSSMKDHGLVPSTDHYAIMVDLLGRAGRLQDAYELIKSMPM 515

Query: 322 -PYKNIAAQTAMISGYVQNKRMDE-ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
            P+  +     +      N  + E A Q    + T+    ++++   Y+  GR D+
Sbjct: 516 QPHSGVWGALLLACNVHNNVELGEIAAQHCFNLETNATAYYSLLANIYSSAGRWDD 571



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 89/166 (53%), Gaps = 4/166 (2%)

Query: 419 NTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIH 478
           ++ SW   I  F Q     +AL ++V M ++G       ++ AL A A       G  IH
Sbjct: 88  DSFSWGWAIRYFSQQGQFKEALYLYVQMQRQGLCPSTFAVSSALRAYARTTYKMGGMSIH 147

Query: 479 HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNAT 538
             + K G+ N ++V  +L+ +Y+K G +  A+ +F +    +V+SWNS+++G+  +GN  
Sbjct: 148 AESYKYGFSNCVYVQTALVDLYSKLGDMNTAQKVFDELAEKNVVSWNSILSGHLKSGNLL 207

Query: 539 EAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           EA ++F+++  +    D +++  ++S  + +G +D    LF+ M E
Sbjct: 208 EAQRVFDQISKK----DVISWNSMISGYAKIGDMDRACVLFQQMPE 249


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  332 bits (850), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 184/476 (38%), Positives = 276/476 (57%), Gaps = 15/476 (3%)

Query: 239  MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW 298
            ++S Y   G++  AR+LFD++P  N+  W  +  A  +RG  EEA   F EM +      
Sbjct: 844  LMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPN 903

Query: 299  TTMIDGYVRIAKLDEARRLLDQMP---YKNIAAQ-----TAMISGYVQNKRMDEANQIFD 350
              ++   ++       RR  + M     KN         +A+I  Y +   +++A ++FD
Sbjct: 904  QFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFD 963

Query: 351  KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDD 406
             I   D+V  N M+ GYAQ G + EA+BL ++M    V  ++V+WNT+IAG++Q+     
Sbjct: 964  WIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSM 1023

Query: 407  AVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS 463
              ++F  M   G   + VSW ++ISGF+QN  + +    F  M  +G      T++  L 
Sbjct: 1024 VSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLP 1083

Query: 464  ACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
            AC ++A L+ G++IH  A+  G   D++V ++L+ MYAKCG I  A++LF      + ++
Sbjct: 1084 ACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVT 1143

Query: 524  WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMT 583
            WNSLI GYA +G   EAI+LF +M       D +TF  VL+ACSH G+V+ G  LF  M 
Sbjct: 1144 WNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQ 1203

Query: 584  EVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLG 643
            E Y IEP +EHYACM+DLL RAG+L EA++++K M ++P+  +WG LLGACR H NI+L 
Sbjct: 1204 EKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELA 1263

Query: 644  RIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
             +A E L ELEP+      LLSN++A+AGRW    K++  M+     K PGCSWIE
Sbjct: 1264 EVAAEHLFELEPESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWIE 1319



 Score =  315 bits (806), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 182/545 (33%), Positives = 298/545 (54%), Gaps = 22/545 (4%)

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ---MPIR-N 263
           ++D Y +  ++DSA + + K+   +  +   ++S YARNG  ++A ++F Q   M  R N
Sbjct: 154 LIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPN 213

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTT----MIDGYVRIAKLDEARRLLD 319
              ++ M+A       I+E  +L   + +   +S T     ++  Y +   ++EA  + +
Sbjct: 214 HYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFE 273

Query: 320 QMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV----VCWNVMIKGYAQCGRMDE 375
            +  +NI + TA I+G+ Q+    +A + F  +    +      +++++   A CG + +
Sbjct: 274 SLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVL---ASCGCVKD 330

Query: 376 AIN--LFRQMVNKD-----IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
            I+  +F   V K      +     +I  Y+ + +MD+A K F++MG+  + VSWNALI+
Sbjct: 331 FIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIA 390

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
           G++ NE    A++ F  M +E    +  T +    AC+   +L    QIH   IKS   +
Sbjct: 391 GYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSNVES 450

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           +L V +SLI  Y +CG ++NA  +F      DV+SWNS+I  Y+ NG+  +AI L  +M+
Sbjct: 451 NLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMI 510

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
            EG  P   TF+ VLSACSH GLV  G + F+ M + Y+I+P   H +CM+D+L RAG+L
Sbjct: 511 EEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQL 570

Query: 609 DEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMH 668
           + A + +K + +KP A IW  LL ACR + N+++     EK+ +LEP   + Y  LSNM+
Sbjct: 571 ENALDFIKKLTMKPTASIWRPLLAACRYNSNLQMAEYVAEKILDLEPNDATVYVTLSNMY 630

Query: 669 AEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLA 728
           AE GRW + E  R  ME     K+PGCSWIEV N+++ F S D       ++   LK L 
Sbjct: 631 AEVGRWADAENQRRLMEQKEISKEPGCSWIEVNNKMYKFFSHDKAHPEMPKVYEKLKQLV 690

Query: 729 AQIRN 733
            QI++
Sbjct: 691 RQIQD 695



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 123/496 (24%), Positives = 232/496 (46%), Gaps = 42/496 (8%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
            S+I  YAK G V+ A +++++M   +  + N +I+ Y  N    +A ++F ++     R
Sbjct: 152 TSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTR 211

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKL 162
           P+ ++++ M+        +++ ++L   +   +   +TA  NA++  Y+K G   EA+ +
Sbjct: 212 PNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIV 271

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDL 218
            +++  +NI+SW + ++G+ ++G+   A K F  M E  +     +++++L     + D 
Sbjct: 272 FESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDF 331

Query: 219 DSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMP-IRNVVAWNAMIAA 273
                F  ++ ++ + S V     ++  Y+  G M EA + F QM    + V+WNA+IA 
Sbjct: 332 IDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAG 391

Query: 274 YVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEA----RRLLDQMPYKN 325
           YV   +IE+A   F  M +     N  +++ +         L        RL+      N
Sbjct: 392 YVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSNVESN 451

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV- 384
           +   +++I  Y Q   ++ A Q+F +I   DVV WN +IK Y+Q G   +AI L R+M+ 
Sbjct: 452 LHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIE 511

Query: 385 --NKDI-VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFL-------QNE 434
             NK    T+ T+++  +    + +  + F+ M +  +        S  +       Q E
Sbjct: 512 EGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQLE 571

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN 494
             LD +K   +      K   S     L+AC + + LQ+   +    I     ND  V  
Sbjct: 572 NALDFIKKLTM------KPTASIWRPLLAACRYNSNLQMAEYVAE-KILDLEPNDATVYV 624

Query: 495 SLITMYAKCGRIQNAE 510
           +L  MYA+ GR  +AE
Sbjct: 625 TLSNMYAEVGRWADAE 640



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 119/478 (24%), Positives = 203/478 (42%), Gaps = 66/478 (13%)

Query: 88   LHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMV 147
            L+  +   A  +   + R   F+  LM + YT  G+L  AR+LFD +PN  +   W  + 
Sbjct: 819  LYRGRALHAHLVIIGLARLTYFAAKLM-SFYTECGQLSNARKLFDKIPNT-NIRRWIVLT 876

Query: 148  AGYAKIGNYNEAKKLLDAM------PSK----NIVSWNSMLSGYTKNGEMHLASKFFEAM 197
               A+ G Y EA      M      P++    +I+     LS       MH  +   +  
Sbjct: 877  GACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTGENMH--TVILKNS 934

Query: 198  EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFD 257
             E D    + ++  Y +   ++ A + F  I ++++V    M+SGYA++G + EA  L  
Sbjct: 935  FESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQ 994

Query: 258  QMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVR-- 307
            +M       NVV+WN +IA + Q G     + +F  M     E + VSWT++I G+V+  
Sbjct: 995  KMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNF 1054

Query: 308  --IAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK---IGTH-DVVCWN 361
                  D  + +LDQ    +    ++++        +    +I      IG   DV   +
Sbjct: 1055 HNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRS 1114

Query: 362  VMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
             ++  YA+CG + EA  LF  M  ++ VTWN++I GYA     ++A+++F +        
Sbjct: 1115 ALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQ-------- 1166

Query: 422  SWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIH-HL 480
                                    M +   K DH T    L+AC+H   ++LG  +   +
Sbjct: 1167 ------------------------MEESDTKLDHLTFTAVLNACSHAGMVELGESLFXKM 1202

Query: 481  AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGN 536
              K      L     ++ +  + G++  A  L K A PV  D   W +L+     +GN
Sbjct: 1203 QEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIK-AMPVEPDKFVWGALLGACRNHGN 1259



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 95/410 (23%), Positives = 180/410 (43%), Gaps = 64/410 (15%)

Query: 52   MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPD 107
            ++S Y + G++++ARKLF+++P  N+  W  +          +EA   F +M     RP+
Sbjct: 844  LMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPN 903

Query: 108  LFSWALMITCYTRKGELEKARELFD-LLPN--KEDTACWNAMVAGYAKIGNYNEAKKLLD 164
             F    ++       +      +   +L N  + D    +A++  Y+K G+  +A ++ D
Sbjct: 904  QFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFD 963

Query: 165  AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE----RDVVSWNLMLDGYVELDDLDS 220
             +  K++V  N+M+SGY ++G +H A    + M++     +VVSWN ++ G+ ++ D   
Sbjct: 964  WIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSM 1023

Query: 221  AWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQM----------------P 260
              + F+ +     E +VVSW +++SG+ +N    E    F +M                P
Sbjct: 1024 VSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLP 1083

Query: 261  I-----------------------RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
                                    ++V   +A++  Y + G I EA  LF  MPERN V+
Sbjct: 1084 ACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVT 1143

Query: 298  WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIG 353
            W ++I GY      +EA  L +QM   +        TA+++       ++    +F K+ 
Sbjct: 1144 WNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQ 1203

Query: 354  THDVV-----CWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAG 397
                +      +  M+    + G++ EA +L + M V  D   W  ++  
Sbjct: 1204 EKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGA 1253



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 149/335 (44%), Gaps = 59/335 (17%)

Query: 22   ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR----NL 77
            I    K G VE+A ++F  +  K+ V  N+M+S YA++G V++A  L ++M Q     N+
Sbjct: 946  IYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNV 1005

Query: 78   VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGE----LEKARE 129
            VSWN++IAG+          E+F  M      PD+ SW  +I+ + +        +  +E
Sbjct: 1006 VSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKE 1065

Query: 130  LFD------------LLPN----------------------KEDTACWNAMVAGYAKIGN 155
            + D            LLP                       ++D    +A+V  YAK G 
Sbjct: 1066 MLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGY 1125

Query: 156  YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDG 211
             +EAK L   MP +N V+WNS++ GY  +G  + A + F  MEE D     +++  +L+ 
Sbjct: 1126 ISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNA 1185

Query: 212  YVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPIR-NVV 265
                  ++     F K+ E+  +      +  M+    R G++ EA  L   MP+  +  
Sbjct: 1186 CSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKF 1245

Query: 266  AWNAMIAAYVQRGQI---EEAARLFIEMPERNPVS 297
             W A++ A    G I   E AA    E+   +P S
Sbjct: 1246 VWGALLGACRNHGNIELAEVAAEHLFELEPESPGS 1280



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 151/299 (50%), Gaps = 28/299 (9%)

Query: 50   NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
            +++I  Y+K G V  A ++F+ +  ++LV  N+M++GY  +  V EA +L  KM     +
Sbjct: 943  SALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVK 1002

Query: 106  PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEA--- 159
            P++ SW  +I  +++ G+     E+F L+     + D   W ++++G+ +  + +E    
Sbjct: 1003 PNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDA 1062

Query: 160  -KKLLDAMPSKNIVSWNSMLSGYT-----KNG-EMHLASKFFEAMEERDVVSWNLMLDGY 212
             K++LD     + V+ +S+L   T     ++G E+H  +       E+DV   + ++D Y
Sbjct: 1063 FKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGV--EKDVYVRSALVDMY 1120

Query: 213  VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWN 268
             +   +  A   F  +PE+N V+W +++ GYA +G   EA  LF+QM   +     + + 
Sbjct: 1121 AKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFT 1180

Query: 269  AMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQMP 322
            A++ A    G +E    LF +M E+  +      +  M+D   R  KL EA  L+  MP
Sbjct: 1181 AVLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMP 1239



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 106/487 (21%), Positives = 212/487 (43%), Gaps = 85/487 (17%)

Query: 8   IGNKGSYV--FNQNKKITQLGKSGRVEEAIKIFSQMSQ----KNTVTYNSMISAYAKNGR 61
           IGN G+    +  +  +   G    ++E  ++ + + +      T   N++++ Y+K G 
Sbjct: 205 IGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGM 264

Query: 62  VNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMI-T 116
           + +A  +FE + QRN++SW + I G+  +   K+A + F  M      P+ F++++++ +
Sbjct: 265 MEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLAS 324

Query: 117 CYTRKGELEKARELFDLLPNKEDTA----CWNAMVAGYAKIGNYNEAKKLLDAMP-SKNI 171
           C   K  ++    +F     K+  A       A++  Y+ +G  +EA+K    M  + + 
Sbjct: 325 CGCVKDFIDG--RMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASN 382

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAMEERDV----------------------------- 202
           VSWN++++GY  N ++  A + F  M + DV                             
Sbjct: 383 VSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSR 442

Query: 203 -----VSWNL-----MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA 252
                V  NL     +++ Y +   L++A + F +I + +VVSW +++  Y++NG   +A
Sbjct: 443 LIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKA 502

Query: 253 ----RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM-------PERNPVSWTTM 301
               R++ ++        +  +++A    G ++E    F  M       PE    S   M
Sbjct: 503 IFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQPEETHCS--CM 560

Query: 302 IDGYVRIAKLDEARRLLDQM---PYKNIAAQTAMISGYVQNKRMDE--ANQIFDKIGTHD 356
           +D   R  +L+ A   + ++   P  +I         Y  N +M E  A +I D +  +D
Sbjct: 561 VDILGRAGQLENALDFIKKLTMKPTASIWRPLLAACRYNSNLQMAEYVAEKILD-LEPND 619

Query: 357 VVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI-----VTW----NTMIAGYAQIRQMDDA 407
              +  +   YA+ GR  +A N  R M  K+I      +W    N M   ++  +   + 
Sbjct: 620 ATVYVTLSNMYAEVGRWADAENQRRLMEQKEISKEPGCSWIEVNNKMYKFFSHDKAHPEM 679

Query: 408 VKIFEEM 414
            K++E++
Sbjct: 680 PKVYEKL 686



 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 102/200 (51%), Gaps = 6/200 (3%)

Query: 461 ALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVD 520
           ALS C     ++LGR+ H   +K G  +D FV  SLI MYAKCG + +A  ++     +D
Sbjct: 119 ALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLD 178

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE 580
             + N LI+ YA NG   +A ++F ++   G  P+  T+  +L+ C  +  +  G +L  
Sbjct: 179 AATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHA 238

Query: 581 CMTEV-YAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
            + ++ Y  E  V +   ++ L S+ G ++EA  + + ++ + N   W   +     H +
Sbjct: 239 HVVKMQYLSETAVGN--ALLTLYSKCGMMEEAEIVFESLRQR-NIISWTASINGFYQHGD 295

Query: 640 IK--LGRIAVEKLSELEPQK 657
            K  L + ++ + S +EP +
Sbjct: 296 FKKALKQFSMMRESGIEPNE 315



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 9/150 (6%)

Query: 15   VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            V+ ++  +    K G + EA  +F  M ++NTVT+NS+I  YA +G  N+A +LF QM +
Sbjct: 1110 VYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEE 1169

Query: 75   RNL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELE 125
             +     +++ +++    H   V+    LF KM       P L  +A M+    R G+L 
Sbjct: 1170 SDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLS 1229

Query: 126  KARELFDLLPNKEDTACWNAMVAGYAKIGN 155
            +A +L   +P + D   W A++      GN
Sbjct: 1230 EAYDLIKAMPVEPDKFVWGALLGACRNHGN 1259



 Score = 66.2 bits (160), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 88/222 (39%), Gaps = 33/222 (14%)

Query: 445  LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG 504
            + T    ++   T A A+   A   AL  GR +H   +  G     +    L++ Y +CG
Sbjct: 793  ISTHRTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECG 852

Query: 505  RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLS 564
            ++ NA  LF      ++  W  L    A  G   EA+  F EM  EG+ P+      +L 
Sbjct: 853  QLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILK 912

Query: 565  ACSHVGLVDGGLKLFECM------TEVYAIEPLVEHY--------AC------------- 597
            AC H+     G  +   +      ++ Y I  L+  Y        AC             
Sbjct: 913  ACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVV 972

Query: 598  ---MIDLLSRAGRLDEAFEMVKGMK---IKPNAGIWGTLLGA 633
               M+   ++ G + EA ++V+ M+   +KPN   W TL+  
Sbjct: 973  MNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAG 1014


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  332 bits (850), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 187/586 (31%), Positives = 305/586 (52%), Gaps = 90/586 (15%)

Query: 228 IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP-IRNVVAWNAMIAAYVQRGQIEEAARL 286
           +P  +++S  T+LS Y+    + ++  +F+ +P     +AW ++I  Y   G    +   
Sbjct: 36  LPSPSLLS--TILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSF 93

Query: 287 FIEM------PERNPV-----SWTTMID----------------------------GYVR 307
           FI+M      P+ N       S T M D                             Y +
Sbjct: 94  FIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSK 153

Query: 308 IAKLDEA---RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMI 364
              L+E    +++ D+    ++ ++    S Y+ + R     ++F+ +   D+V WN +I
Sbjct: 154 FWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLR-----KVFEMMPKRDIVSWNTVI 208

Query: 365 KGYAQCGRMDEAINLFRQMVNKD------------------------------------- 387
            G AQ G  ++A+ + R+M N D                                     
Sbjct: 209 SGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYD 268

Query: 388 --IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVL 445
             +   +++I  YA+  ++DD+ ++F  M  + + +SWN++I+G +QN    + LK F  
Sbjct: 269 ADVFIGSSLIDMYAKCTRVDDSCRVFY-MLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQ 327

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
           M     K +H + +  + ACAHL  L LG+Q+H   I+S +  ++F+ ++L+ MYAKCG 
Sbjct: 328 MLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGN 387

Query: 506 IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565
           I+ A  +F   +  D++SW ++I GYA++G+A +AI LF+ M +EGV P+ V F+ VL+A
Sbjct: 388 IRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTA 447

Query: 566 CSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAG 625
           CSH GLVD   K F  MT+ Y I P +EHYA + DLL R GRL+EA+E +  M I+P   
Sbjct: 448 CSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGS 507

Query: 626 IWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685
           +W TLL ACR+H+NI+L     +KL  ++PQ    Y LLSN+++ AGRW +  K+R++M 
Sbjct: 508 VWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMR 567

Query: 686 GSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
             G +K+P CSWIE+KN++H F++GD        I   LK L  Q+
Sbjct: 568 DKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQM 613



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/275 (26%), Positives = 138/275 (50%), Gaps = 19/275 (6%)

Query: 66  RKLFEQMPQRNLVSWNSMIAGY----LHNDKVKEARELFDKMFRPDLFSWALMITCYTRK 121
           RK+FE MP+R++VSWN++I+G     +H D +   RE+ +   RPD F+ + ++  +   
Sbjct: 190 RKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEY 249

Query: 122 GELEKARELFDL-LPNKEDTACW--NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSML 178
             L K +E+    + N  D   +  ++++  YAK    +++ ++   +P  + +SWNS++
Sbjct: 250 VNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSII 309

Query: 179 SGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP----E 230
           +G  +NG      KFF+ M     + + VS++ ++     L  L    +    I     +
Sbjct: 310 AGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFD 369

Query: 231 QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF--- 287
            NV     ++  YA+ G +  AR +FD+M + ++V+W AMI  Y   G   +A  LF   
Sbjct: 370 GNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRM 429

Query: 288 -IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
            +E  + N V++  ++        +DEA +  + M
Sbjct: 430 EVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSM 464



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 156/331 (47%), Gaps = 31/331 (9%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----R 105
           +S+I  YAK  RV+D+ ++F  +PQ + +SWNS+IAG + N    E  + F +M     +
Sbjct: 275 SSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIK 334

Query: 106 PDLFSWALMITCYTRKGELEKARELFD-LLPNKEDTACW--NAMVAGYAKIGNYNEAKKL 162
           P+  S++ ++        L   ++L   ++ ++ D   +  +A+V  YAK GN   A+ +
Sbjct: 335 PNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWI 394

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDL 218
            D M   ++VSW +M+ GY  +G  + A   F+ ME   V    V++  +L        +
Sbjct: 395 FDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLV 454

Query: 219 DSAWKFFQKIPEQNVVSWVTMLSGYA-------RNGRMLEARRLFDQMPIRNV-VAWNAM 270
           D AWK+F  + +   +  +  L  YA       R GR+ EA      M I      W+ +
Sbjct: 455 DEAWKYFNSMTQDYRI--IPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTL 512

Query: 271 IAAYVQRGQIEEA----ARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
           +AA      IE A     +LF   P+ N  ++  + + Y    +  +AR+L   M  K +
Sbjct: 513 LAACRVHKNIELAEKVSKKLFTVDPQ-NIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGM 571

Query: 327 AAQTAMISGYVQNKRM-----DEANQIFDKI 352
             + A     ++NK       D+++  +D+I
Sbjct: 572 KKKPACSWIEIKNKVHAFVAGDKSHPYYDRI 602



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 128/575 (22%), Positives = 235/575 (40%), Gaps = 135/575 (23%)

Query: 95  EARELFDKMFRPDLFSWALM---ITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYA 151
           +A++L  ++ R  L S +L+   ++ Y+    L  +  +F+ LP+   T  W +++  Y 
Sbjct: 23  QAKQLHAQILRTSLPSPSLLSTILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYT 82

Query: 152 KIGNYNEAKKLLDAM------PSKNI-------------VSWNSMLSG-----------Y 181
             G +  +      M      P  N+             + +   + G           Y
Sbjct: 83  SHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLY 142

Query: 182 TKNGEMHLASKFFEAMEE----RDVVSWNLMLDGYVELDD----LDSAWKFFQKIPEQNV 233
           T N  M++ SKF+ ++EE    + V       D Y + +     L S  K F+ +P++++
Sbjct: 143 TCNALMNMYSKFW-SLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDI 201

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQM---------------------------------- 259
           VSW T++SG A+NG   +A  +  +M                                  
Sbjct: 202 VSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGY 261

Query: 260 PIRN-----VVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
            IRN     V   +++I  Y +  +++++ R+F  +P+ + +SW ++I G V+    DE 
Sbjct: 262 AIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEG 321

Query: 315 RRLLDQM----------PYKNIAAQTAMIS---------GYVQNKRMDEANQIFDKIGTH 355
            +   QM           + +I    A ++         GY+   R D            
Sbjct: 322 LKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDG----------- 370

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM- 414
           +V   + ++  YA+CG +  A  +F +M   D+V+W  MI GYA      DA+ +F+ M 
Sbjct: 371 NVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRME 430

Query: 415 --GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQ 472
             G + N V++ A+++         +A K F  MTQ+ +          +    H AA+ 
Sbjct: 431 VEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYR---------IIPGLEHYAAVA 481

Query: 473 --LGRQIHHLAIKSGYVNDLFV---GNSLITMYAKCGRIQNAELLFK------DADPVDV 521
             LGR +  L     +++D+ +   G+   T+ A C   +N EL  K        DP ++
Sbjct: 482 DLLGR-VGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNI 540

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
            ++  L   Y+  G   +A KL   M  +G+   P
Sbjct: 541 GAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKP 575



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 93/430 (21%), Positives = 198/430 (46%), Gaps = 45/430 (10%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL----VSWNSMIAGYLHND 91
           K+F  M +++ V++N++IS  A+NG   DA  +  +M   +L     + +S++  +    
Sbjct: 191 KVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYV 250

Query: 92  KVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMV 147
            + + +E+     R     D+F  + +I  Y +   ++ +  +F +LP + D   WN+++
Sbjct: 251 NLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLP-QHDGISWNSII 309

Query: 148 AGYAKIGNYNEAKKLLDAM----PSKNIVSWNSMLSGYTKNGEMHLASKF----FEAMEE 199
           AG  + G ++E  K    M       N VS++S++        +HL  +       +  +
Sbjct: 310 AGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFD 369

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM 259
            +V   + ++D Y +  ++ +A   F K+   ++VSW  M+ GYA +G   +A  LF +M
Sbjct: 370 GNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRM 429

Query: 260 PIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-----SWTTMIDGYVRIAK 310
            +     N VA+ A++ A    G ++EA + F  M +   +      +  + D   R+ +
Sbjct: 430 EVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGR 489

Query: 311 LDEARRLLDQMPYKNIAAQ-TAMISGYVQNKRMDEANQIFDKIGTHD---VVCWNVMIKG 366
           L+EA   +  M  +   +  + +++    +K ++ A ++  K+ T D   +  + ++   
Sbjct: 490 LEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNI 549

Query: 367 YAQCGRMDEAINLF-----RQMVNKDIVTW-------NTMIAG---YAQIRQMDDAVKIF 411
           Y+  GR  +A  L      + M  K   +W       +  +AG   +    ++++A+K+ 
Sbjct: 550 YSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVL 609

Query: 412 EEMGKRRNTV 421
            E  +R   V
Sbjct: 610 LEQMEREGYV 619



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 148/305 (48%), Gaps = 32/305 (10%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM-- 72
           VF  +  I    K  RV+++ ++F  + Q + +++NS+I+   +NG  ++  K F+QM  
Sbjct: 271 VFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLI 330

Query: 73  --PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEK 126
              + N VS++S++    H   +   ++L   + R     ++F  + ++  Y + G +  
Sbjct: 331 AKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRT 390

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP----SKNIVSWNSMLSGYT 182
           AR +FD +    D   W AM+ GYA  G+  +A  L   M       N V++ ++L+  +
Sbjct: 391 ARWIFDKM-ELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACS 449

Query: 183 KNGEMHLASKFFEAMEERDVVSWNLM--LDGYVELDD-------LDSAWKFFQKIPEQNV 233
             G +  A K+F +M +     + ++  L+ Y  + D       L+ A++F   +  +  
Sbjct: 450 HAGLVDEAWKYFNSMTQ----DYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPT 505

Query: 234 VS-WVTMLSG--YARNGRMLE--ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFI 288
            S W T+L+     +N  + E  +++LF   P +N+ A+  +   Y   G+ ++A +L I
Sbjct: 506 GSVWSTLLAACRVHKNIELAEKVSKKLFTVDP-QNIGAYVLLSNIYSAAGRWKDARKLRI 564

Query: 289 EMPER 293
            M ++
Sbjct: 565 AMRDK 569


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  332 bits (850), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 194/615 (31%), Positives = 310/615 (50%), Gaps = 81/615 (13%)

Query: 196 AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRL 255
           A+   +   +N ++  Y  +     A + F +IP+ N+ SW  +L  Y++ G + E    
Sbjct: 35  ALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMEST 94

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM-----PERNPVSWTTMI-----DGY 305
           F+++P R+ V WN +I  Y   G +  A + +  M          V+  TM+     +G+
Sbjct: 95  FEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGH 154

Query: 306 VRIAK------------------------------LDEARRLLDQMPYKNIAAQTAMISG 335
           V + K                              + +A+++   +  +N     +++ G
Sbjct: 155 VSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGG 214

Query: 336 YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM------------ 383
            +    +++A Q+F  +   D V W  MIKG AQ G   EAI  FR+M            
Sbjct: 215 LLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPF 273

Query: 384 ---------------------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
                                          I   + +I  Y + + +  A  +F+ M K
Sbjct: 274 GSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRM-K 332

Query: 417 RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ 476
           ++N VSW A++ G+ Q     +A+KIF+ M + G   DH TL  A+SACA++++L+ G Q
Sbjct: 333 QKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQ 392

Query: 477 IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGN 536
            H  AI SG ++ + V NSL+T+Y KCG I ++  LF + +  D +SW ++++ YA  G 
Sbjct: 393 FHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGR 452

Query: 537 ATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYA 596
           A E I+LF++MV  G+ PD VT  GV+SACS  GLV+ G + F+ MT  Y I P + HY+
Sbjct: 453 AVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYS 512

Query: 597 CMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQ 656
           CMIDL SR+GRL+EA   + GM   P+A  W TLL ACR   N+++G+ A E L EL+P 
Sbjct: 513 CMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPH 572

Query: 657 KTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCR 716
             + Y LLS+++A  G+WD V ++R  M     +K+PG SWI+ K ++H+F + D     
Sbjct: 573 HPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPY 632

Query: 717 TAEICNTLKTLAAQI 731
             +I   L+ L  +I
Sbjct: 633 LDQIYAKLEELNNKI 647



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 126/526 (23%), Positives = 241/526 (45%), Gaps = 28/526 (5%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           I   +    T  YN+++ AYA       AR++F+++PQ NL SWN+++  Y     + E 
Sbjct: 32  IIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISEM 91

Query: 97  RELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNY 156
              F+K+   D  +W ++I  Y+  G +  A + ++ +            +    K+ + 
Sbjct: 92  ESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSS 151

Query: 157 NEAKKLLDAMPSKNI--------VSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLM 208
           N    L   +  + I        +  + +L  Y   G +  A K F  +++R+ V +N +
Sbjct: 152 NGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSL 211

Query: 209 LDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV---- 264
           + G +    ++ A + F+ + E++ VSW  M+ G A+NG   EA   F +M ++ +    
Sbjct: 212 MGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQ 270

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPERN----PVSWTTMIDGYVRIAKLDEARRLLDQ 320
             + +++ A    G I E  ++   +   N        + +ID Y +   L  A+ + D+
Sbjct: 271 YPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDR 330

Query: 321 MPYKNIAAQTAMISGYVQNKRMDEANQIF---DKIGTH-DVVCWNVMIKGYAQCGRMDEA 376
           M  KN+ + TAM+ GY Q  R +EA +IF    + G   D       I   A    ++E 
Sbjct: 331 MKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEG 390

Query: 377 INLFRQMVNKDIVTW----NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
                + +   ++ +    N+++  Y +   +DD+ ++F EM   R+ VSW A++S + Q
Sbjct: 391 SQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEM-NVRDAVSWTAMVSAYAQ 449

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS-GYVNDLF 491
               ++ +++F  M Q G K D  TL   +SAC+    ++ G++   L     G V  + 
Sbjct: 450 FGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIG 509

Query: 492 VGNSLITMYAKCGRIQNAELLFKDAD-PVDVISWNSLIAGYAINGN 536
             + +I ++++ GR++ A         P D I W +L++     GN
Sbjct: 510 HYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGN 555



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 185/404 (45%), Gaps = 47/404 (11%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           SY+   +  +      G + +A K+F  +  +NTV YNS++      G + DA +LF  M
Sbjct: 172 SYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGM 231

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKAR 128
            +++ VSW +MI G   N   KEA E F +M     + D + +  ++      G + + +
Sbjct: 232 -EKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGK 290

Query: 129 ELFDLL--PNKED-TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
           ++   +   N +D     +A++  Y K    + AK + D M  KN+VSW +M+ GY + G
Sbjct: 291 QIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTG 350

Query: 186 EMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT--- 238
               A K F  M+    + D  +    +     +  L+   +F  K     ++ +VT   
Sbjct: 351 RAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSN 410

Query: 239 -MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER---- 293
            +++ Y + G + ++ RLF++M +R+ V+W AM++AY Q G+  E  +LF +M +     
Sbjct: 411 SLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKP 470

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
           + V+ T +I    R   +++ +R                       K M     I   IG
Sbjct: 471 DGVTLTGVISACSRAGLVEKGQRYF---------------------KLMTSEYGIVPSIG 509

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIA 396
                 ++ MI  +++ GR++EA+     M    D + W T+++
Sbjct: 510 H-----YSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLS 548



 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 113/494 (22%), Positives = 225/494 (45%), Gaps = 38/494 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F+ N  +    K+G + E    F ++  ++ VT+N +I  Y+ +G V  A K +  M +
Sbjct: 72  LFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMR 131

Query: 75  ---RNL--VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWAL----MITCYTRKGELE 125
               NL  V+  +M+     N  V   +++  ++ +    S+ L    ++  Y   G + 
Sbjct: 132 DFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCIS 191

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
            A+++F  L ++ +T  +N+++ G    G   +A +L   M  K+ VSW +M+ G  +NG
Sbjct: 192 DAKKVFYGLDDR-NTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQNG 249

Query: 186 EMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV---- 237
               A + F  M+    + D   +  +L     L  ++   +    I   N    +    
Sbjct: 250 LAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGS 309

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER--NP 295
            ++  Y +   +  A+ +FD+M  +NVV+W AM+  Y Q G+ EEA ++F++M     +P
Sbjct: 310 ALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDP 369

Query: 296 VSWT--TMIDGYVRIAKLDEARRLLDQMPYKN----IAAQTAMISGYVQNKRMDEANQIF 349
             +T    I     ++ L+E  +   +         +    ++++ Y +   +D++ ++F
Sbjct: 370 DHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLF 429

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVTWNTMIAGYAQIRQMD 405
           +++   D V W  M+  YAQ GR  E I LF +MV      D VT   +I+  ++   ++
Sbjct: 430 NEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVE 489

Query: 406 DAVKIFEEMGKRRNTVS----WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
              + F+ M      V     ++ +I  F ++    +A++    M         +TL   
Sbjct: 490 KGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTL--- 546

Query: 462 LSACAHLAALQLGR 475
           LSAC +   L++G+
Sbjct: 547 LSACRNKGNLEIGK 560



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 165/411 (40%), Gaps = 107/411 (26%)

Query: 288 IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347
           I +  RN   +  MI G            ++  +PY        ++  Y   K    A +
Sbjct: 14  IGLGARNQSRYVKMIHG-----------NIIRALPYPETFLYNNIVHAYALMKSSTYARR 62

Query: 348 IFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDA 407
           +FD+I   ++  WN ++  Y++ G + E  + F ++ ++D VTWN +I GY+    +  A
Sbjct: 63  VFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAA 122

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
           VK            ++N ++  F  N   +  + +  L +  G                 
Sbjct: 123 VK------------AYNTMMRDFSANLTRVTLMTMLKLSSSNGH---------------- 154

Query: 468 LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK------------------------- 502
              + LG+QIH   IK G+ + L VG+ L+ MYA                          
Sbjct: 155 ---VSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSL 211

Query: 503 ------CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
                 CG I++A  LF+  +  D +SW ++I G A NG A EAI+ F EM ++G+  D 
Sbjct: 212 MGGLLACGMIEDALQLFRGMEK-DSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQ 270

Query: 557 VTFIGVLSACSHVGLVDGGLKLFECMT------EVYAIEPLVE--------HYA------ 596
             F  VL AC  +G ++ G ++  C+        +Y    L++        HYA      
Sbjct: 271 YPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDR 330

Query: 597 ----------CMIDLLSRAGRLDEAFEMVKGMK---IKPNAGIWGTLLGAC 634
                      M+    + GR +EA ++   M+   I P+    G  + AC
Sbjct: 331 MKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISAC 381



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 112/263 (42%), Gaps = 51/263 (19%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKN------------------------------------ 45
           +   G++GR EEA+KIF  M +                                      
Sbjct: 343 VVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGL 402

Query: 46  ---TVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
                  NS+++ Y K G ++D+ +LF +M  R+ VSW +M++ Y    +  E  +LFDK
Sbjct: 403 IHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDK 462

Query: 103 M----FRPDLFSWALMITCYTRKGELEKARELFDLLPNK----EDTACWNAMVAGYAKIG 154
           M     +PD  +   +I+  +R G +EK +  F L+ ++         ++ M+  +++ G
Sbjct: 463 MVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSG 522

Query: 155 NYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD---VVSWNLMLD 210
              EA + ++ MP   + + W ++LS     G + +     E++ E D      + L+  
Sbjct: 523 RLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSS 582

Query: 211 GYVELDDLDSAWKFFQKIPEQNV 233
            Y      DS  +  + + E+NV
Sbjct: 583 IYASKGKWDSVAQLRRGMREKNV 605



 Score = 75.9 bits (185), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 112/242 (46%), Gaps = 25/242 (10%)

Query: 14  YVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP 73
           YV   N  +T  GK G ++++ ++F++M+ ++ V++ +M+SAYA+ GR  +  +LF++M 
Sbjct: 405 YVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMV 464

Query: 74  QRNL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGEL 124
           Q  L    V+   +I+       V++ +  F  M       P +  ++ MI  ++R G L
Sbjct: 465 QHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRL 524

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYN----EAKKLLDAMPSKNIVSWNSMLSG 180
           E+A    + +P   D   W  +++     GN       A+ L++  P  +   +  + S 
Sbjct: 525 EEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDP-HHPAGYTLLSSI 583

Query: 181 YTKNGEMHLASKFFEAMEERDV--------VSWNLMLDGYVELDDLDSAW--KFFQKIPE 230
           Y   G+    ++    M E++V        + W   L  +   DD  S +  + + K+ E
Sbjct: 584 YASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSF-SADDESSPYLDQIYAKLEE 642

Query: 231 QN 232
            N
Sbjct: 643 LN 644


>gi|242037437|ref|XP_002466113.1| hypothetical protein SORBIDRAFT_01g001570 [Sorghum bicolor]
 gi|241919967|gb|EER93111.1| hypothetical protein SORBIDRAFT_01g001570 [Sorghum bicolor]
          Length = 693

 Score =  332 bits (850), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 204/639 (31%), Positives = 323/639 (50%), Gaps = 55/639 (8%)

Query: 152 KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS--WNLML 209
           K G  ++A  L D MP KN+V+W + +SG T+NG+   A+  F  M E  V +  +    
Sbjct: 54  KSGRLSDALDLFDRMPRKNVVAWTTAISGCTRNGQPEAAAAMFADMLESGVAANDFACNA 113

Query: 210 DGYVELDDLDSAWKFFQKIPEQNVVS------WV--TMLSGYARNGRMLEARRLFDQMPI 261
                      A    +++    V +      W+   ++  Y+R G M  A  +F +M  
Sbjct: 114 ALAACAAAGAGALSLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSMWAAEEVFRRMEA 173

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRL 317
            +VV + ++++A  + G +  A  +  +M  +    N  + T+M+    R+        +
Sbjct: 174 PDVVGYTSLVSALCRNGDLARAVEVLCQMMRQGLQPNEHTMTSMLAECPRMIGEQIHGYM 233

Query: 318 LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAI 377
           L  M  +++ A TA+I  Y +    D A  +F+ + + +VV W  M++   + GR+++A+
Sbjct: 234 LKVMGSQSVYASTALIDFYSRYGDFDMAETVFENLDSKNVVSWCSMMQLCIRDGRLEDAL 293

Query: 378 NLFRQMVNK------------------------------------DIVTWNTMIAGYAQI 401
            +F +M+++                                    DI   N +++ Y + 
Sbjct: 294 RVFSEMISEAVEPNEFAFSIALGACGSVCLGRQIHCSAIKCNLMTDIRVSNALLSMYGRS 353

Query: 402 RQMDDAVKIFEEMGKRRNT--VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
             + +   +   +GK  N   VSW A IS   QN F   A+ + + M  EG   +    +
Sbjct: 354 GFVSEVEAV---LGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAFS 410

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
             LS+CA LA L  GRQ+H LA+K G    +  GN+LI MY+KCG+I +A L F   +  
Sbjct: 411 SGLSSCADLALLDQGRQLHCLALKLGCDFKVCTGNALINMYSKCGQIGSARLAFDVMNLH 470

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
           DV+SWNSLI G A +G A   ++ F EM   G  PD  TFI VL  C+H GLV  G   F
Sbjct: 471 DVMSWNSLIHGLAQHGAANLVLEAFSEMCSSGWQPDDSTFIAVLVGCNHAGLVKEGETFF 530

Query: 580 ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
             MT+ Y + P   HYACMID+L R GR DEA  M+K M  +P+  IW TLL +C++H+N
Sbjct: 531 RLMTDRYGLTPTPSHYACMIDMLGRNGRFDEALHMIKNMPFEPDVLIWKTLLASCKLHKN 590

Query: 640 IKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
           + +G++A +KL EL  + ++ Y L+SN++A    W + E+VR  M+  G +K  G SWIE
Sbjct: 591 LDIGKLATDKLMELSERDSASYVLMSNLYAMHEEWQDAERVRRRMDEIGVKKDAGWSWIE 650

Query: 700 VKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNTPLAV 738
           VKN++ TF++ D     +A I   L  L   +++T L V
Sbjct: 651 VKNEVSTFVARDTSHSDSASIYQMLAELVVVMQDTELDV 689



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 118/486 (24%), Positives = 215/486 (44%), Gaps = 59/486 (12%)

Query: 229 PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFI 288
           P  +VV     L    ++GR+ +A  LFD+MP +NVVAW   I+   + GQ E AA +F 
Sbjct: 38  PPPDVVLDCKRLDALMKSGRLSDALDLFDRMPRKNVVAWTTAISGCTRNGQPEAAAAMFA 97

Query: 289 EMPERNPV---------------------------------------SW--TTMIDGYVR 307
           +M E                                           +W  + +I+ Y R
Sbjct: 98  DMLESGVAANDFACNAALAACAAAGAGALSLGEQVHSLAVRAGFAADAWIGSCLIELYSR 157

Query: 308 IAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC-WNVMIKG 366
              +  A  +  +M   ++   T+++S   +N  +  A ++  ++    +    + M   
Sbjct: 158 CGSMWAAEEVFRRMEAPDVVGYTSLVSALCRNGDLARAVEVLCQMMRQGLQPNEHTMTSM 217

Query: 367 YAQCGRM-DEAIN--LFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
            A+C RM  E I+  + + M ++ +     +I  Y++    D A  +FE +   +N VSW
Sbjct: 218 LAECPRMIGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFDMAETVFENL-DSKNVVSW 276

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
            +++   +++    DAL++F  M  E  + +    + AL AC  +    LGRQIH  AIK
Sbjct: 277 CSMMQLCIRDGRLEDALRVFSEMISEAVEPNEFAFSIALGACGSVC---LGRQIHCSAIK 333

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
              + D+ V N+L++MY + G +   E +    +  D++SW + I+    NG + +A+ L
Sbjct: 334 CNLMTDIRVSNALLSMYGRSGFVSEVEAVLGKIENPDLVSWTAAISANFQNGFSEKAVAL 393

Query: 544 FEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLS 603
             +M  EG  P+   F   LS+C+ + L+D G +L  C+      +  V     +I++ S
Sbjct: 394 LLQMHSEGFTPNDYAFSSGLSSCADLALLDQGRQL-HCLALKLGCDFKVCTGNALINMYS 452

Query: 604 RAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL-----EPQKT 658
           + G++  A      M +  +   W +L+     H    L    +E  SE+     +P  +
Sbjct: 453 KCGQIGSARLAFDVMNLH-DVMSWNSLIHGLAQHGAANL---VLEAFSEMCSSGWQPDDS 508

Query: 659 SCYALL 664
           +  A+L
Sbjct: 509 TFIAVL 514



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 129/605 (21%), Positives = 245/605 (40%), Gaps = 102/605 (16%)

Query: 20  KKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV- 78
           K++  L KSGR+ +A+ +F +M +KN V + + IS   +NG+   A  +F  M +  +  
Sbjct: 47  KRLDALMKSGRLSDALDLFDRMPRKNVVAWTTAISGCTRNGQPEAAAAMFADMLESGVAA 106

Query: 79  --------------------------------------SW--NSMIAGYLHNDKVKEARE 98
                                                 +W  + +I  Y     +  A E
Sbjct: 107 NDFACNAALAACAAAGAGALSLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSMWAAEE 166

Query: 99  LFDKMFRPDLFSWALMITCYTRKGELEKARELF------DLLPNKEDTACWNAMVAGYAK 152
           +F +M  PD+  +  +++   R G+L +A E+        L PN+       +M+A   +
Sbjct: 167 VFRRMEAPDVVGYTSLVSALCRNGDLARAVEVLCQMMRQGLQPNEHTM---TSMLAECPR 223

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY 212
           +        +L  M S+++ +  +++  Y++ G+  +A   FE ++ ++VVSW  M+   
Sbjct: 224 MIGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFDMAETVFENLDSKNVVSWCSMMQLC 283

Query: 213 VELDDLDSAWKFFQKI------PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA 266
           +    L+ A + F ++      P +   S      G    GR +    +   + + ++  
Sbjct: 284 IRDGRLEDALRVFSEMISEAVEPNEFAFSIALGACGSVCLGRQIHCSAIKCNL-MTDIRV 342

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK-- 324
            NA+++ Y + G + E   +  ++   + VSWT  I    +    ++A  LL QM  +  
Sbjct: 343 SNALLSMYGRSGFVSEVEAVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGF 402

Query: 325 --NIAAQTAMISGYVQNKRMDEANQIFD---KIGTHDVVC-WNVMIKGYAQCGRMDEAIN 378
             N  A ++ +S       +D+  Q+     K+G    VC  N +I  Y++CG++  A  
Sbjct: 403 TPNDYAFSSGLSSCADLALLDQGRQLHCLALKLGCDFKVCTGNALINMYSKCGQIGSARL 462

Query: 379 LFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
            F  M   D+++WN++I G AQ    +  ++ F E                         
Sbjct: 463 AFDVMNLHDVMSWNSLIHGLAQHGAANLVLEAFSE------------------------- 497

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI-KSGYVNDLFVGNSLI 497
                  M   G + D ST    L  C H   ++ G     L   + G          +I
Sbjct: 498 -------MCSSGWQPDDSTFIAVLVGCNHAGLVKEGETFFRLMTDRYGLTPTPSHYACMI 550

Query: 498 TMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555
            M  + GR   A  + K+   +P DV+ W +L+A   ++ N  +  KL  + +ME    D
Sbjct: 551 DMLGRNGRFDEALHMIKNMPFEP-DVLIWKTLLASCKLHKN-LDIGKLATDKLMELSERD 608

Query: 556 PVTFI 560
             +++
Sbjct: 609 SASYV 613



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/330 (21%), Positives = 138/330 (41%), Gaps = 46/330 (13%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
            N  ++  G+SG V E   +  ++   + V++ + ISA  +NG    A  L  QM     
Sbjct: 343 SNALLSMYGRSGFVSEVEAVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQM----- 397

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDL---L 134
                      H++            F P+ ++++  ++       L++ R+L  L   L
Sbjct: 398 -----------HSEG-----------FTPNDYAFSSGLSSCADLALLDQGRQLHCLALKL 435

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
                    NA++  Y+K G    A+   D M   +++SWNS++ G  ++G  +L  + F
Sbjct: 436 GCDFKVCTGNALINMYSKCGQIGSARLAFDVMNLHDVMSWNSLIHGLAQHGAANLVLEAF 495

Query: 195 EAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYAR 245
             M     + D  ++  +L G      +     FF+ + ++  ++     +  M+    R
Sbjct: 496 SEMCSSGWQPDDSTFIAVLVGCNHAGLVKEGETFFRLMTDRYGLTPTPSHYACMIDMLGR 555

Query: 246 NGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE---EAARLFIEMPERNPVSWTTM 301
           NGR  EA  +   MP   +V+ W  ++A+      ++    A    +E+ ER+  S+  M
Sbjct: 556 NGRFDEALHMIKNMPFEPDVLIWKTLLASCKLHKNLDIGKLATDKLMELSERDSASYVLM 615

Query: 302 IDGYVRIAKLDEA---RRLLDQMPYKNIAA 328
            + Y    +  +A   RR +D++  K  A 
Sbjct: 616 SNLYAMHEEWQDAERVRRRMDEIGVKKDAG 645


>gi|218186690|gb|EEC69117.1| hypothetical protein OsI_38034 [Oryza sativa Indica Group]
          Length = 551

 Score =  332 bits (850), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 146/291 (50%), Positives = 212/291 (72%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S VF  N+++T L +SG++  A ++F +M ++N V+YN+M+SA A +GR+ +AR+LF++M
Sbjct: 9   SAVFRSNQELTSLARSGQLAAARRLFEEMPRRNVVSYNAMVSALAHHGRLAEARRLFDEM 68

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD 132
           P+RN VSWN+M+     + +V++ARELFD M   + +SW +M++CY R GEL  AREL D
Sbjct: 69  PRRNPVSWNTMMVACSQHGRVEDARELFDAMPARNEYSWTIMVSCYVRAGELTLARELLD 128

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
            +P ++  AC+N M++GYAK G + +A  LL  MP+ +IVSWNS+L G  +N E+  + +
Sbjct: 129 RMPGEKCAACYNTMISGYAKNGRFEDAIALLQEMPAPDIVSWNSVLGGLIRNEEISRSVQ 188

Query: 193 FFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA 252
           FF+ M ++D+VSWNLML+GYV   DLD A  FF +IP  NV+SWV +++GY + GRM EA
Sbjct: 189 FFDEMPDKDLVSWNLMLEGYVRAGDLDVASAFFSRIPSPNVISWVNLVNGYCQAGRMGEA 248

Query: 253 RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMID 303
           R LFD+MP RN VAWN +++ YVQ  Q+E A  LFIEMPE+N +SWTTM+ 
Sbjct: 249 RELFDRMPERNFVAWNVLLSGYVQFSQVEAAYNLFIEMPEKNSISWTTMVS 299



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 109/320 (34%), Positives = 185/320 (57%), Gaps = 14/320 (4%)

Query: 115 ITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSW 174
           +T   R G+L  AR LF+ +P + +   +NAMV+  A  G   EA++L D MP +N VSW
Sbjct: 18  LTSLARSGQLAAARRLFEEMP-RRNVVSYNAMVSALAHHGRLAEARRLFDEMPRRNPVSW 76

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-EQNV 233
           N+M+   +++G +  A + F+AM  R+  SW +M+  YV   +L  A +   ++P E+  
Sbjct: 77  NTMMVACSQHGRVEDARELFDAMPARNEYSWTIMVSCYVRAGELTLARELLDRMPGEKCA 136

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
             + TM+SGYA+NGR  +A  L  +MP  ++V+WN+++   ++  +I  + + F EMP++
Sbjct: 137 ACYNTMISGYAKNGRFEDAIALLQEMPAPDIVSWNSVLGGLIRNEEISRSVQFFDEMPDK 196

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
           + VSW  M++GYVR   LD A     ++P  N+ +   +++GY Q  RM EA ++FD++ 
Sbjct: 197 DLVSWNLMLEGYVRAGDLDVASAFFSRIPSPNVISWVNLVNGYCQAGRMGEARELFDRMP 256

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGY-------AQIRQMDD 406
             + V WNV++ GY Q  +++ A NLF +M  K+ ++W TM++         ++I  + D
Sbjct: 257 ERNFVAWNVLLSGYVQFSQVEAAYNLFIEMPEKNSISWTTMVSDCFGSVSMGSEIVDIPD 316

Query: 407 AV-----KIFEEMGKRRNTV 421
            +     K F EM K+   V
Sbjct: 317 TLFAGIRKDFAEMSKKMTKV 336



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 91/276 (32%), Positives = 164/276 (59%), Gaps = 2/276 (0%)

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
           N  L+   ++G++  A + FE M  R+VVS+N M+        L  A + F ++P +N V
Sbjct: 15  NQELTSLARSGQLAAARRLFEEMPRRNVVSYNAMVSALAHHGRLAEARRLFDEMPRRNPV 74

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-ER 293
           SW TM+   +++GR+ +AR LFD MP RN  +W  M++ YV+ G++  A  L   MP E+
Sbjct: 75  SWNTMMVACSQHGRVEDARELFDAMPARNEYSWTIMVSCYVRAGELTLARELLDRMPGEK 134

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
               + TMI GY +  + ++A  LL +MP  +I +  +++ G ++N+ +  + Q FD++ 
Sbjct: 135 CAACYNTMISGYAKNGRFEDAIALLQEMPAPDIVSWNSVLGGLIRNEEISRSVQFFDEMP 194

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEE 413
             D+V WN+M++GY + G +D A   F ++ + ++++W  ++ GY Q  +M +A ++F+ 
Sbjct: 195 DKDLVSWNLMLEGYVRAGDLDVASAFFSRIPSPNVISWVNLVNGYCQAGRMGEARELFDR 254

Query: 414 MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
           M +R N V+WN L+SG++Q      A  +F+ M ++
Sbjct: 255 MPER-NFVAWNVLLSGYVQFSQVEAAYNLFIEMPEK 289



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 138/299 (46%), Gaps = 49/299 (16%)

Query: 333 ISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWN 392
           ++   ++ ++  A ++F+++   +VV +N M+   A  GR+ EA  LF +M  ++ V+WN
Sbjct: 18  LTSLARSGQLAAARRLFEEMPRRNVVSYNAMVSALAHHGRLAEARRLFDEMPRRNPVSWN 77

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
           TM+   +Q  +++DA ++F+ M   RN  SW  ++S +++      A ++   M  E   
Sbjct: 78  TMMVACSQHGRVEDARELFDAM-PARNEYSWTIMVSCYVRAGELTLARELLDRMPGE--- 133

Query: 453 ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512
                  CA  AC                            N++I+ YAK GR ++A  L
Sbjct: 134 ------KCA--ACY---------------------------NTMISGYAKNGRFEDAIAL 158

Query: 513 FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
            ++    D++SWNS++ G   N   + +++ F+EM  +    D V++  +L      G +
Sbjct: 159 LQEMPAPDIVSWNSVLGGLIRNEEISRSVQFFDEMPDK----DLVSWNLMLEGYVRAGDL 214

Query: 573 DGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           D     F  +       P V  +  +++   +AGR+ EA E+   M  + N   W  LL
Sbjct: 215 DVASAFFSRIP-----SPNVISWVNLVNGYCQAGRMGEARELFDRMPER-NFVAWNVLL 267



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 68/108 (62%), Gaps = 4/108 (3%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           ++G ++ A   FS++   N +++ ++++ Y + GR+ +AR+LF++MP+RN V+WN +++G
Sbjct: 210 RAGDLDVASAFFSRIPSPNVISWVNLVNGYCQAGRMGEARELFDRMPERNFVAWNVLLSG 269

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMIT-CYTRKGELEKARELFDL 133
           Y+   +V+ A  LF +M   +  SW  M++ C+   G +    E+ D+
Sbjct: 270 YVQFSQVEAAYNLFIEMPEKNSISWTTMVSDCF---GSVSMGSEIVDI 314



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 74/144 (51%), Gaps = 13/144 (9%)

Query: 490 LFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549
           +F  N  +T  A+ G++  A  LF++    +V+S+N++++  A +G   EA +LF+EM  
Sbjct: 11  VFRSNQELTSLARSGQLAAARRLFEEMPRRNVVSYNAMVSALAHHGRLAEARRLFDEMPR 70

Query: 550 EGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYA--CMIDLLSRAGR 607
                +PV++  ++ ACS  G V+   +LF+ M       P    Y+   M+    RAG 
Sbjct: 71  R----NPVSWNTMMVACSQHGRVEDARELFDAM-------PARNEYSWTIMVSCYVRAGE 119

Query: 608 LDEAFEMVKGMKIKPNAGIWGTLL 631
           L  A E++  M  +  A  + T++
Sbjct: 120 LTLARELLDRMPGEKCAACYNTMI 143


>gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Vitis vinifera]
          Length = 545

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 185/476 (38%), Positives = 276/476 (57%), Gaps = 15/476 (3%)

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW 298
           ++S Y   G++  AR+LFD++P  N+  W  +  A  +RG  EEA   F EM +      
Sbjct: 68  LMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPN 127

Query: 299 TTMIDGYVRIAKLDEARRLLDQMP---YKNIAAQ-----TAMISGYVQNKRMDEANQIFD 350
             ++   ++       RR  + M     KN         +A+I  Y +   +++A ++FD
Sbjct: 128 QFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFD 187

Query: 351 KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDD 406
            I   D+V  N M+ GYAQ G + EA+NL ++M    V  ++V+WNT+IAG++Q+     
Sbjct: 188 WIVDKDLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSM 247

Query: 407 AVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS 463
             ++F  M   G   + VSW ++ISGF+QN  + +    F  M  +G      T++  L 
Sbjct: 248 VSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLP 307

Query: 464 ACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
           AC ++A L+ G++IH  A+  G   D++V ++L+ MYAKCG I  A++LF      + ++
Sbjct: 308 ACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVT 367

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMT 583
           WNSLI GYA +G   EAI+LF +M       D +TF  VL+ACSH G+V+ G  LF  M 
Sbjct: 368 WNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFRKMQ 427

Query: 584 EVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLG 643
           E Y IEP +EHYACM+DLL RAG+L EA++++K M ++P+  +WG LLGACR H NI+L 
Sbjct: 428 EKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELA 487

Query: 644 RIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
            +A E L ELEP+      LLSN++A+AGRW    K++  M+     K PGCSWIE
Sbjct: 488 EVAAEHLFELEPESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWIE 543



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 114/454 (25%), Positives = 195/454 (42%), Gaps = 65/454 (14%)

Query: 112 ALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM----- 166
           A +++ YT  G+L  AR+LFD +PN  +   W  +    A+ G Y EA      M     
Sbjct: 66  AKLMSFYTECGQLSNARKLFDKIPNT-NIRRWIVLTGACARRGFYEEALSAFSEMQKEGL 124

Query: 167 -PSK----NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA 221
            P++    +I+     LS       MH  +   +   E D    + ++  Y +   ++ A
Sbjct: 125 RPNQFVLPSILKACGHLSDRRTGENMH--TVILKNSFESDAYIISALIYMYSKCGHVEKA 182

Query: 222 WKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQR 277
            + F  I ++++V    M+SGYA++G + EA  L  +M       NVV+WN +IA + Q 
Sbjct: 183 CRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQV 242

Query: 278 GQIEEAARLFIEMP----ERNPVSWTTMIDGYVR----IAKLDEARRLLDQMPYKNIAAQ 329
           G     + +F  M     E + VSWT++I G+V+        D  + +LDQ    +    
Sbjct: 243 GDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTI 302

Query: 330 TAMISGYVQNKRMDEANQIFDK---IGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
           ++++        +    +I      IG   DV   + ++  YA+CG + EA  LF  M  
Sbjct: 303 SSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPE 362

Query: 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVL 445
           ++ VTWN++I GYA     ++A+++F +                                
Sbjct: 363 RNTVTWNSLIFGYANHGYCNEAIELFNQ-------------------------------- 390

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHH-LAIKSGYVNDLFVGNSLITMYAKCG 504
           M +   K DH T    L+AC+H   ++LG  +   +  K      L     ++ +  + G
Sbjct: 391 MEESDTKLDHLTFTAVLNACSHAGMVELGESLFRKMQEKYRIEPRLEHYACMVDLLGRAG 450

Query: 505 RIQNAELLFKDADPV--DVISWNSLIAGYAINGN 536
           ++  A  L K A PV  D   W +L+     +GN
Sbjct: 451 KLSEAYDLIK-AMPVEPDKFVWGALLGACRNHGN 483



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 95/410 (23%), Positives = 180/410 (43%), Gaps = 64/410 (15%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPD 107
           ++S Y + G++++ARKLF+++P  N+  W  +          +EA   F +M     RP+
Sbjct: 68  LMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPN 127

Query: 108 LFSWALMITCYTRKGELEKARELFD-LLPN--KEDTACWNAMVAGYAKIGNYNEAKKLLD 164
            F    ++       +      +   +L N  + D    +A++  Y+K G+  +A ++ D
Sbjct: 128 QFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFD 187

Query: 165 AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDS 220
            +  K++V  N+M+SGY ++G +H A    + M++     +VVSWN ++ G+ ++ D   
Sbjct: 188 WIVDKDLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSM 247

Query: 221 AWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQM----------------P 260
             + F+ +     E +VVSW +++SG+ +N    E    F +M                P
Sbjct: 248 VSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLP 307

Query: 261 I-----------------------RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
                                   ++V   +A++  Y + G I EA  LF  MPERN V+
Sbjct: 308 ACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVT 367

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIG 353
           W ++I GY      +EA  L +QM   +        TA+++       ++    +F K+ 
Sbjct: 368 WNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFRKMQ 427

Query: 354 THDVV-----CWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAG 397
               +      +  M+    + G++ EA +L + M V  D   W  ++  
Sbjct: 428 EKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGA 477



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 150/335 (44%), Gaps = 59/335 (17%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR----NL 77
           I    K G VE+A ++F  +  K+ V  N+M+S YA++G V++A  L ++M Q     N+
Sbjct: 170 IYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNV 229

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGE----LEKARE 129
           VSWN++IAG+          E+F  M      PD+ SW  +I+ + +        +  +E
Sbjct: 230 VSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKE 289

Query: 130 LFD------------LLPN----------------------KEDTACWNAMVAGYAKIGN 155
           + D            LLP                       ++D    +A+V  YAK G 
Sbjct: 290 MLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGY 349

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDG 211
            +EAK L   MP +N V+WNS++ GY  +G  + A + F  MEE D     +++  +L+ 
Sbjct: 350 ISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNA 409

Query: 212 YVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPIR-NVV 265
                 ++     F+K+ E+  +      +  M+    R G++ EA  L   MP+  +  
Sbjct: 410 CSHAGMVELGESLFRKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKF 469

Query: 266 AWNAMIAAYVQRGQI---EEAARLFIEMPERNPVS 297
            W A++ A    G I   E AA    E+   +P S
Sbjct: 470 VWGALLGACRNHGNIELAEVAAEHLFELEPESPGS 504



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 150/299 (50%), Gaps = 28/299 (9%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           +++I  Y+K G V  A ++F+ +  ++LV  N+M++GY  +  V EA  L  KM     +
Sbjct: 167 SALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVK 226

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEA--- 159
           P++ SW  +I  +++ G+     E+F L+     + D   W ++++G+ +  + +E    
Sbjct: 227 PNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDA 286

Query: 160 -KKLLDAMPSKNIVSWNSMLSGYT-----KNG-EMHLASKFFEAMEERDVVSWNLMLDGY 212
            K++LD     + V+ +S+L   T     ++G E+H  +       E+DV   + ++D Y
Sbjct: 287 FKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGV--EKDVYVRSALVDMY 344

Query: 213 VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWN 268
            +   +  A   F  +PE+N V+W +++ GYA +G   EA  LF+QM   +     + + 
Sbjct: 345 AKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFT 404

Query: 269 AMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQMP 322
           A++ A    G +E    LF +M E+  +      +  M+D   R  KL EA  L+  MP
Sbjct: 405 AVLNACSHAGMVELGESLFRKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMP 463



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 9/150 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V+ ++  +    K G + EA  +F  M ++NTVT+NS+I  YA +G  N+A +LF QM +
Sbjct: 334 VYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEE 393

Query: 75  RNL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELE 125
            +     +++ +++    H   V+    LF KM       P L  +A M+    R G+L 
Sbjct: 394 SDTKLDHLTFTAVLNACSHAGMVELGESLFRKMQEKYRIEPRLEHYACMVDLLGRAGKLS 453

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGN 155
           +A +L   +P + D   W A++      GN
Sbjct: 454 EAYDLIKAMPVEPDKFVWGALLGACRNHGN 483



 Score = 66.2 bits (160), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 86/220 (39%), Gaps = 33/220 (15%)

Query: 447 TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI 506
           T    ++   T A A+   A   AL  GR +H   +  G     +    L++ Y +CG++
Sbjct: 19  THRTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQL 78

Query: 507 QNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
            NA  LF      ++  W  L    A  G   EA+  F EM  EG+ P+      +L AC
Sbjct: 79  SNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKAC 138

Query: 567 SHVGLVDGGLKLFECM------TEVYAIEPLVEHY--------AC--------------- 597
            H+     G  +   +      ++ Y I  L+  Y        AC               
Sbjct: 139 GHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMN 198

Query: 598 -MIDLLSRAGRLDEAFEMVKGMK---IKPNAGIWGTLLGA 633
            M+   ++ G + EA  +V+ M+   +KPN   W TL+  
Sbjct: 199 AMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAG 238


>gi|357457477|ref|XP_003599019.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488067|gb|AES69270.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 944

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 207/735 (28%), Positives = 368/735 (50%), Gaps = 71/735 (9%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRP 106
           S+I  + K G +++AR +F++MP ++ V WN+MI+G   +    EA E+F +M    F  
Sbjct: 139 SLIDMFCKMGCLDNARNVFDKMPVKDGVCWNAMISGLSQSLNPCEALEMFWRMQMEGFEV 198

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACW-NAMVAGYAKIGNYNEAKKLLDA 165
           D  S   +    +R G++   + +   +  +       N+++  Y K G+ + A+++ D 
Sbjct: 199 DKVSILNLAPAVSRLGDVGCCKSIHGYVVRRSICGVVSNSLIDMYCKCGDVHSAQRVFDR 258

Query: 166 MPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSA 221
           M  ++ VSW +M++GY KNG      +    M   +V    V+    L    E+ DL+  
Sbjct: 259 MGVRDDVSWATMMAGYVKNGCYFEGLQLLHKMRRGNVKMNKVAVVNALLVVAEMRDLEKG 318

Query: 222 WKFFQKIPEQNVVSWVT----MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR 277
            + +    +  ++S +     ++  YA+ G + +AR LF  +  R++VAW+A ++A V+ 
Sbjct: 319 KEIYNYALQMGLMSDIVVATPIVCMYAKCGELKKARELFLSLEGRDLVAWSAFLSALVET 378

Query: 278 GQIEEAARLFIEM------PERNPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIA 327
           G   E   +F  M      P++  +S   ++ G   I+ +   + +    +      +I+
Sbjct: 379 GYPREVLSIFQVMQYEGLKPDKAILS--ILVSGCTEISNIGLGKIMHCYAIKADMESDIS 436

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD 387
             T ++S Y++ +    A  +F+++   D+V WN +I G+ + G    A+ +F ++    
Sbjct: 437 MVTTLVSMYIRFELFTYAMTLFNRMQIKDIVVWNTLINGFTKYGDPHLALEMFNRLQLSG 496

Query: 388 IVT-WNTMIAGYAQIRQMDD--------------------------------------AV 408
           I+    TM+  ++    MDD                                        
Sbjct: 497 ILPDSGTMVGLFSACAIMDDLDLGTCLHGGIEKSGFESDIHVKVALMDMYAKCGSLCSVE 556

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
           ++F      ++ VSWN +I+G+L N +  +A+  F  M  E  + +  T    L A ++L
Sbjct: 557 RLFLLTKHVKDEVSWNVMIAGYLHNGYSNEAISTFRRMKLENVRPNLVTFVTILPAVSYL 616

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
           + L+     H   I+ G+++   +GNSLI MYAKCG+++ +E  F + +  D ISWN+++
Sbjct: 617 SILREAMAFHTCIIRMGFLSCTLIGNSLIDMYAKCGQLRYSEKCFHEMENKDTISWNAML 676

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI 588
           + YA++G    A+ LF  M    V  D V++I VLSAC H GL+  G  +F  M E + +
Sbjct: 677 SAYAMHGQGELAVALFSVMQESNVRVDSVSYISVLSACRHSGLIQEGWDIFASMCEKHHV 736

Query: 589 EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVE 648
           EP +EHYACM+DLL  AG  DE   ++  M  +P+A +WG LL AC++H N+ LG +AV 
Sbjct: 737 EPSMEHYACMVDLLGCAGLFDEVLSLLNKMTTEPDARVWGALLAACKIHSNVTLGEVAVH 796

Query: 649 KLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEV-KNQIHTF 707
            L +LEP+    + +LS+++A+ GRW++  + R  +   G +K PG SW+   KN++   
Sbjct: 797 HLLKLEPRNPVHHVVLSDIYAQCGRWNDARRTRSHINNHGLKKIPGYSWVGAHKNEM--- 853

Query: 708 LSGDPKQCRTAEICN 722
              + K  R    CN
Sbjct: 854 ---EKKPTRITMSCN 865



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/506 (23%), Positives = 228/506 (45%), Gaps = 58/506 (11%)

Query: 170 NIVSWNSMLSGYTKNGEMHLASKFFEAMEE----RDVVSWNLMLDGYVELDDLDSAWKFF 225
           +++ +NS +  Y+K    H A   +  + +     D  ++N +L       D       +
Sbjct: 63  SLILYNSFIKAYSKFHHFHKAINLYHTILKIGLKPDKFTFNFVLKACTSALDFHEGVNIY 122

Query: 226 QKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIE 281
           + I     E +V    +++  + + G +  AR +FD+MP+++ V WNAMI+   Q     
Sbjct: 123 KDIVFNGLECDVYIGTSLIDMFCKMGCLDNARNVFDKMPVKDGVCWNAMISGLSQSLNPC 182

Query: 282 EAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA--QTAMISG 335
           EA  +F  M     E + VS   +     R+  +   + +   +  ++I      ++I  
Sbjct: 183 EALEMFWRMQMEGFEVDKVSILNLAPAVSRLGDVGCCKSIHGYVVRRSICGVVSNSLIDM 242

Query: 336 YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM------VNK--- 386
           Y +   +  A ++FD++G  D V W  M+ GY + G   E + L  +M      +NK   
Sbjct: 243 YCKCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNGCYFEGLQLLHKMRRGNVKMNKVAV 302

Query: 387 ------------------------------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
                                         DIV    ++  YA+  ++  A ++F  + +
Sbjct: 303 VNALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGELKKARELFLSL-E 361

Query: 417 RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ 476
            R+ V+W+A +S  ++  +  + L IF +M  EG K D + L+  +S C  ++ + LG+ 
Sbjct: 362 GRDLVAWSAFLSALVETGYPREVLSIFQVMQYEGLKPDKAILSILVSGCTEISNIGLGKI 421

Query: 477 IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGN 536
           +H  AIK+   +D+ +  +L++MY +      A  LF      D++ WN+LI G+   G+
Sbjct: 422 MHCYAIKADMESDISMVTTLVSMYIRFELFTYAMTLFNRMQIKDIVVWNTLINGFTKYGD 481

Query: 537 ATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYA 596
              A+++F  + + G+ PD  T +G+ SAC+ +  +D G  L   + E    E  +    
Sbjct: 482 PHLALEMFNRLQLSGILPDSGTMVGLFSACAIMDDLDLGTCLHGGI-EKSGFESDIHVKV 540

Query: 597 CMIDLLSRAGRL---DEAFEMVKGMK 619
            ++D+ ++ G L   +  F + K +K
Sbjct: 541 ALMDMYAKCGSLCSVERLFLLTKHVK 566



 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 122/547 (22%), Positives = 218/547 (39%), Gaps = 123/547 (22%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRN- 76
            N  I    K G V  A ++F +M  ++ V++ +M++ Y KNG   +  +L  +M + N 
Sbjct: 236 SNSLIDMYCKCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNGCYFEGLQLLHKMRRGNV 295

Query: 77  --------------------------------------LVSWNSMIAGYLHNDKVKEARE 98
                                                 +V    ++  Y    ++K+ARE
Sbjct: 296 KMNKVAVVNALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGELKKARE 355

Query: 99  LFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGN 155
           LF  +   DL +W+  ++     G   +   +F ++     K D A  + +V+G  +I N
Sbjct: 356 LFLSLEGRDLVAWSAFLSALVETGYPREVLSIFQVMQYEGLKPDKAILSILVSGCTEISN 415

Query: 156 -----------------------------------YNEAKKLLDAMPSKNIVSWNSMLSG 180
                                              +  A  L + M  K+IV WN++++G
Sbjct: 416 IGLGKIMHCYAIKADMESDISMVTTLVSMYIRFELFTYAMTLFNRMQIKDIVVWNTLING 475

Query: 181 YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE----LDDLDSAWKFFQKIP----EQN 232
           +TK G+ HLA + F  ++   ++  +  + G       +DDLD        I     E +
Sbjct: 476 FTKYGDPHLALEMFNRLQLSGILPDSGTMVGLFSACAIMDDLDLGTCLHGGIEKSGFESD 535

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMP-IRNVVAWNAMIAAYVQRGQIEEAARLF---- 287
           +   V ++  YA+ G +    RLF     +++ V+WN MIA Y+  G   EA   F    
Sbjct: 536 IHVKVALMDMYAKCGSLCSVERLFLLTKHVKDEVSWNVMIAGYLHNGYSNEAISTFRRMK 595

Query: 288 IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347
           +E    N V++ T++     ++ L EA      M +     +   +S  +          
Sbjct: 596 LENVRPNLVTFVTILPAVSYLSILREA------MAFHTCIIRMGFLSCTL---------- 639

Query: 348 IFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDA 407
               IG       N +I  YA+CG++  +   F +M NKD ++WN M++ YA   Q + A
Sbjct: 640 ----IG-------NSLIDMYAKCGQLRYSEKCFHEMENKDTISWNAMLSAYAMHGQGELA 688

Query: 408 VKIF---EEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK---KADHSTLACA 461
           V +F   +E   R ++VS+ +++S    +    +   IF  M ++       +H      
Sbjct: 689 VALFSVMQESNVRVDSVSYISVLSACRHSGLIQEGWDIFASMCEKHHVEPSMEHYACMVD 748

Query: 462 LSACAHL 468
           L  CA L
Sbjct: 749 LLGCAGL 755



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 141/348 (40%), Gaps = 79/348 (22%)

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMG 415
           DV     +I  + + G +D A N+F +M  KD V WN MI+G +Q               
Sbjct: 133 DVYIGTSLIDMFCKMGCLDNARNVFDKMPVKDGVCWNAMISGLSQ--------------- 177

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
                 S N             +AL++F  M  EG + D  ++     A + L  +   +
Sbjct: 178 ------SLNP-----------CEALEMFWRMQMEGFEVDKVSILNLAPAVSRLGDVGCCK 220

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
            IH   ++        V NSLI MY KCG + +A+ +F      D +SW +++AGY  NG
Sbjct: 221 SIHGYVVRRSICG--VVSNSLIDMYCKCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNG 278

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE------CMTEVYAIE 589
              E ++L  +M    V  + V  +  L   + +  ++ G +++        M+++    
Sbjct: 279 CYFEGLQLLHKMRRGNVKMNKVAVVNALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVAT 338

Query: 590 PLVEHYACMIDL-------LSRAGR--------------------LDEAFEMVKGMKIKP 622
           P+V  YA   +L       LS  GR                    +   F++++   +KP
Sbjct: 339 PIVCMYAKCGELKKARELFLSLEGRDLVAWSAFLSALVETGYPREVLSIFQVMQYEGLKP 398

Query: 623 NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAE 670
           +  I   L+  C    NI LG+I              CYA+ ++M ++
Sbjct: 399 DKAILSILVSGCTEISNIGLGKI------------MHCYAIKADMESD 434



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 101/218 (46%), Gaps = 4/218 (1%)

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
           K  + + +N+ I  + +      A+ ++  + + G K D  T    L AC        G 
Sbjct: 60  KNPSLILYNSFIKAYSKFHHFHKAINLYHTILKIGLKPDKFTFNFVLKACTSALDFHEGV 119

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
            I+   + +G   D+++G SLI M+ K G + NA  +F      D + WN++I+G + + 
Sbjct: 120 NIYKDIVFNGLECDVYIGTSLIDMFCKMGCLDNARNVFDKMPVKDGVCWNAMISGLSQSL 179

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHY 595
           N  EA+++F  M MEG   D V+ + +  A S +G V G  K         +I  +V + 
Sbjct: 180 NPCEALEMFWRMQMEGFEVDKVSILNLAPAVSRLGDV-GCCKSIHGYVVRRSICGVVSN- 237

Query: 596 ACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
             +ID+  + G +  A  +   M ++ +   W T++  
Sbjct: 238 -SLIDMYCKCGDVHSAQRVFDRMGVRDDVS-WATMMAG 273



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 70/140 (50%), Gaps = 9/140 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  I    K G++  + K F +M  K+T+++N+M+SAYA +G+   A  LF  M + N+ 
Sbjct: 642 NSLIDMYAKCGQLRYSEKCFHEMENKDTISWNAMLSAYAMHGQGELAVALFSVMQESNVR 701

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARE 129
              VS+ S+++   H+  ++E  ++F  M       P +  +A M+      G  ++   
Sbjct: 702 VDSVSYISVLSACRHSGLIQEGWDIFASMCEKHHVEPSMEHYACMVDLLGCAGLFDEVLS 761

Query: 130 LFDLLPNKEDTACWNAMVAG 149
           L + +  + D   W A++A 
Sbjct: 762 LLNKMTTEPDARVWGALLAA 781


>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15930
 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 190/580 (32%), Positives = 312/580 (53%), Gaps = 25/580 (4%)

Query: 169 KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI 228
           K  V W S L G+        A K F  + E DVV WN M+ G+ ++D      + +  +
Sbjct: 71  KLFVFWCSRLGGHVS-----YAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNM 125

Query: 229 PEQNVV----SWVTMLSGYARNGRMLEARRLFDQMPIR-----NVVAWNAMIAAYVQRGQ 279
            ++ V     ++  +L+G  R+G  L   +      ++     N+   NA++  Y   G 
Sbjct: 126 LKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGL 185

Query: 280 IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAM-----IS 334
           ++ A  +F    + +  SW  MI GY R+ + +E+  LL +M  +N+ + T++     +S
Sbjct: 186 MDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEME-RNLVSPTSVTLLLVLS 244

Query: 335 GYVQNKRMDEANQIFDKIGT----HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
              + K  D   ++ + +        +   N ++  YA CG MD A+ +FR M  +D+++
Sbjct: 245 ACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVIS 304

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
           W +++ GY +   +  A   F++M   R+ +SW  +I G+L+     ++L+IF  M   G
Sbjct: 305 WTSIVKGYVERGNLKLARTYFDQM-PVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAG 363

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
              D  T+   L+ACAHL +L++G  I     K+   ND+ VGN+LI MY KCG  + A+
Sbjct: 364 MIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQ 423

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
            +F D D  D  +W +++ G A NG   EAIK+F +M    + PD +T++GVLSAC+H G
Sbjct: 424 KVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSG 483

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
           +VD   K F  M   + IEP + HY CM+D+L RAG + EA+E+++ M + PN+ +WG L
Sbjct: 484 MVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGAL 543

Query: 631 LGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQ 690
           LGA R+H +  +  +A +K+ ELEP   + YALL N++A   RW ++ +VR  +     +
Sbjct: 544 LGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIK 603

Query: 691 KQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQ 730
           K PG S IEV    H F++GD    ++ EI   L+ LA +
Sbjct: 604 KTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMKLEELAQE 643



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/416 (25%), Positives = 187/416 (44%), Gaps = 63/416 (15%)

Query: 60  GRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMI 115
           G V+ A KLF ++P+ ++V WN+MI G+   D   E   L+  M +    PD  ++  ++
Sbjct: 82  GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141

Query: 116 T----------------CYTRK--------------------GELEKARELFDLLPNKED 139
                            C+  K                    G ++ AR +FD    KED
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFD-RRCKED 200

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNS-----MLSGYTKNGEMHLASKFF 194
              WN M++GY ++  Y E+ +LL  M  +N+VS  S     +LS  +K  +  L  +  
Sbjct: 201 VFSWNLMISGYNRMKEYEESIELLVEM-ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVH 259

Query: 195 EAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRML 250
           E +     E  +   N +++ Y    ++D A + F+ +  ++V+SW +++ GY   G + 
Sbjct: 260 EYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLK 319

Query: 251 EARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-SWTTMIDGYVRIA 309
            AR  FDQMP+R+ ++W  MI  Y++ G   E+  +F EM     +    TM+      A
Sbjct: 320 LARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACA 379

Query: 310 KLDE------ARRLLDQMPYKN-IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNV 362
            L         +  +D+   KN +    A+I  Y +    ++A ++F  +   D   W  
Sbjct: 380 HLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTA 439

Query: 363 MIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           M+ G A  G+  EAI +F QM    +  D +T+  +++       +D A K F +M
Sbjct: 440 MVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKM 495



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 188/378 (49%), Gaps = 25/378 (6%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           N    N+++  Y+  G ++ AR +F++  + ++ SWN MI+GY    + +E+ EL  +M 
Sbjct: 169 NLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEME 228

Query: 105 R----PDLFSWALMITCYTR---KGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYN 157
           R    P   +  L+++  ++   K   ++  E       +      NA+V  YA  G  +
Sbjct: 229 RNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMD 288

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDD 217
            A ++  +M +++++SW S++ GY + G + LA  +F+ M  RD +SW +M+DGY+    
Sbjct: 289 IAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGC 348

Query: 218 LDSAWKFFQKIPEQNVV----SWVTMLSGYARNGRMLEA---RRLFDQMPIRN-VVAWNA 269
            + + + F+++    ++    + V++L+  A  G +      +   D+  I+N VV  NA
Sbjct: 349 FNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNA 408

Query: 270 MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
           +I  Y + G  E+A ++F +M +R+  +WT M+ G     +  EA ++  QM   +I   
Sbjct: 409 LIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPD 468

Query: 330 T----AMISGYVQNKRMDEANQIFDKIGTH-----DVVCWNVMIKGYAQCGRMDEAINLF 380
                 ++S    +  +D+A + F K+ +       +V +  M+    + G + EA  + 
Sbjct: 469 DITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEIL 528

Query: 381 RQM-VNKDIVTWNTMIAG 397
           R+M +N + + W  ++  
Sbjct: 529 RKMPMNPNSIVWGALLGA 546



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 148/322 (45%), Gaps = 23/322 (7%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           +N  +      G ++ A++IF  M  ++ +++ S++  Y + G +  AR  F+QMP R+ 
Sbjct: 274 ENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDR 333

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKA---REL 130
           +SW  MI GYL      E+ E+F +M      PD F+   ++T     G LE     +  
Sbjct: 334 ISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTY 393

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
            D    K D    NA++  Y K G   +A+K+   M  ++  +W +M+ G   NG+   A
Sbjct: 394 IDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEA 453

Query: 191 SKFFEAMEERDVVSWNLMLDGYVELDD----LDSAWKFFQKIP-----EQNVVSWVTMLS 241
            K F  M++  +   ++   G +   +    +D A KFF K+      E ++V +  M+ 
Sbjct: 454 IKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVD 513

Query: 242 GYARNGRMLEARRLFDQMPIR-NVVAWNAMIAA---YVQRGQIEEAARLFIEMPERNPVS 297
              R G + EA  +  +MP+  N + W A++ A   +      E AA+  +E+   N   
Sbjct: 514 MLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAV 573

Query: 298 WTTMIDGYV---RIAKLDEARR 316
           +  + + Y    R   L E RR
Sbjct: 574 YALLCNIYAGCKRWKDLREVRR 595



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 36/166 (21%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMS----QKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           F     +  L  +G+ +EAIK+F QM     Q + +TY  ++SA   +G V+ ARK F +
Sbjct: 435 FTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAK 494

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           M                            D    P L  +  M+    R G +++A E+ 
Sbjct: 495 MRS--------------------------DHRIEPSLVHYGCMVDMLGRAGLVKEAYEIL 528

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNE-----AKKLLDAMPSKNIV 172
             +P   ++  W A++ G +++ N        AKK+L+  P    V
Sbjct: 529 RKMPMNPNSIVWGALL-GASRLHNDEPMAELAAKKILELEPDNGAV 573


>gi|242073178|ref|XP_002446525.1| hypothetical protein SORBIDRAFT_06g017520 [Sorghum bicolor]
 gi|241937708|gb|EES10853.1| hypothetical protein SORBIDRAFT_06g017520 [Sorghum bicolor]
          Length = 910

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 213/720 (29%), Positives = 369/720 (51%), Gaps = 61/720 (8%)

Query: 43  QKNTVTYNSMISAYAKNG---RVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEAREL 99
           + +T+  N+++S YAK G    ++DA + F  +  +++VSWNS+IAGY+ N   +EA  L
Sbjct: 213 ESDTLCGNALVSMYAKCGGSRAMDDAHRAFSSIRCKDVVSWNSVIAGYIENRLFQEALAL 272

Query: 100 FDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYN-- 157
           F +M               T +G L     +  +LP           V  + + G Y+  
Sbjct: 273 FGQM---------------TSQGSLPNYSTVASILP-----------VCSFTEFGRYHGK 306

Query: 158 EAKKLLDAMPSKNIVSW-NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELD 216
           E    +     +  VS  N++++ Y+K  E+      F +M+ RD+VSWN ++ GYV   
Sbjct: 307 EVHSFVVRHGLEMDVSVSNALMTHYSKVLEVKAVESIFMSMDVRDIVSWNTIIAGYVMNG 366

Query: 217 DLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRM---LEARRLFDQMPI--RNVVAW 267
               A   F ++    +    VS++++L+  A+ G +   +       Q P+  +     
Sbjct: 367 YHYRALGLFHELLSTGIAPDSVSFISLLTACAQVGDVKAGMGVHGYILQRPVLLQETSLM 426

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDG-----------YVRIAKLDEARR 316
           NA++  Y    + ++A R F ++  ++ +SW  ++             +V ++++     
Sbjct: 427 NALVTFYSHCDRFDDAFRAFTDILNKDSISWNAILSACAHSEQHIEKFFVLMSEMCRGVN 486

Query: 317 LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG-THDVVCWNVMIKGYAQCGRMDE 375
             D +   N+      +S +   K + EA+    ++G T +    N ++  Y +CG   +
Sbjct: 487 QWDSVTVLNVI----HVSTFCGIKMVREAHGWSLRVGYTGETSVANAILDAYVKCGYSHD 542

Query: 376 AINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEF 435
           A  LFR    ++ VT N MI+ Y +   ++DA  IF  M ++ +  SWN +I  + QN  
Sbjct: 543 ANILFRNHGGRNTVTDNIMISCYLKNNCIEDAEVIFNHMAEK-DLTSWNLMIQLYAQNHM 601

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS 495
              A  +F  +  EG K D  ++   L AC HL ++QL RQ H   +++  + D+ +  +
Sbjct: 602 DDQAFSLFNHLQSEGLKPDLVSITNILEACIHLCSVQLVRQCHAYMLRAS-LEDIHLEGA 660

Query: 496 LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555
           L+  Y+KCG I NA  +F +    D++++ ++I  YA++G A +A++LF +M+   + PD
Sbjct: 661 LVDAYSKCGNITNAYNIF-EVSSKDLVTFTAMIGCYAMHGMAEKAVELFSKMIKLDIRPD 719

Query: 556 PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV 615
            V    +LSACSH GLVD G+K+F+ + E++ + P  EHYACM+DLL+R+G L +A+   
Sbjct: 720 HVVLTTLLSACSHAGLVDAGIKIFKSIGEIHRVVPTAEHYACMVDLLARSGHLQDAYMFA 779

Query: 616 KGMKIKP-NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRW 674
             M     NA  W +LLGAC++H  IK+G++A ++L  +E      Y ++SN++A   +W
Sbjct: 780 LDMPPHAVNANAWSSLLGACKVHGEIKIGQLAADQLFSMEEGDIGNYVIMSNIYAADEKW 839

Query: 675 DEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNT 734
           D VE VR  M+    +K  GCSWIEV    H F + D      + I + L +L  QI++T
Sbjct: 840 DGVEHVRKLMKSKDMKKPAGCSWIEVDKTRHLFKASDTNHQDRSCIYDMLGSLYQQIKDT 899



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 134/664 (20%), Positives = 240/664 (36%), Gaps = 200/664 (30%)

Query: 208 MLDGY-VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF---------- 256
           ++D Y   L  L  A   F ++   + V W  +++  +R G   +A  LF          
Sbjct: 116 VMDAYGRRLGSLADALLVFDEMARPDAVCWNILITACSRRGLFEDAFVLFRSMLSCGVVE 175

Query: 257 DQMPIRNVVA--------W-------------------------NAMIAAYVQRG---QI 280
             MP    VA        W                         NA+++ Y + G    +
Sbjct: 176 QSMPTAVTVAVIVPACAKWGHLRTGRSVHGYVVKTGLESDTLCGNALVSMYAKCGGSRAM 235

Query: 281 EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK---------------- 324
           ++A R F  +  ++ VSW ++I GY+      EA  L  QM  +                
Sbjct: 236 DDAHRAFSSIRCKDVVSWNSVIAGYIENRLFQEALALFGQMTSQGSLPNYSTVASILPVC 295

Query: 325 ------------------------NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW 360
                                   +++   A+++ Y +   +     IF  +   D+V W
Sbjct: 296 SFTEFGRYHGKEVHSFVVRHGLEMDVSVSNALMTHYSKVLEVKAVESIFMSMDVRDIVSW 355

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVT------------------------------ 390
           N +I GY   G    A+ LF ++++  I                                
Sbjct: 356 NTIIAGYVMNGYHYRALGLFHELLSTGIAPDSVSFISLLTACAQVGDVKAGMGVHGYILQ 415

Query: 391 ----------WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
                      N ++  Y+   + DDA + F ++   ++++SWNA++S    +E H++  
Sbjct: 416 RPVLLQETSLMNALVTFYSHCDRFDDAFRAFTDI-LNKDSISWNAILSACAHSEQHIE-- 472

Query: 441 KIFVLMTQEGKKADH--STLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
           K FVLM++  +  +   S     +   +    +++ R+ H  +++ GY  +  V N+++ 
Sbjct: 473 KFFVLMSEMCRGVNQWDSVTVLNVIHVSTFCGIKMVREAHGWSLRVGYTGETSVANAILD 532

Query: 499 MYAKCGRIQNAELLFK------------------------DADPV-------DVISWNSL 527
            Y KCG   +A +LF+                        DA+ +       D+ SWN +
Sbjct: 533 AYVKCGYSHDANILFRNHGGRNTVTDNIMISCYLKNNCIEDAEVIFNHMAEKDLTSWNLM 592

Query: 528 IAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV------------------ 569
           I  YA N    +A  LF  +  EG+ PD V+   +L AC H+                  
Sbjct: 593 IQLYAQNHMDDQAFSLFNHLQSEGLKPDLVSITNILEACIHLCSVQLVRQCHAYMLRASL 652

Query: 570 -------GLVDGGLKLFECMTEVYAI-----EPLVEHYACMIDLLSRAGRLDEAFEMVKG 617
                   LVD   K    +T  Y I     + LV  +  MI   +  G  ++A E+   
Sbjct: 653 EDIHLEGALVDAYSKCGN-ITNAYNIFEVSSKDLVT-FTAMIGCYAMHGMAEKAVELFSK 710

Query: 618 M---KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSC--YALLSNMHAEAG 672
           M    I+P+  +  TLL AC     +  G    + + E+     +   YA + ++ A +G
Sbjct: 711 MIKLDIRPDHVVLTTLLSACSHAGLVDAGIKIFKSIGEIHRVVPTAEHYACMVDLLARSG 770

Query: 673 RWDE 676
              +
Sbjct: 771 HLQD 774



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 137/335 (40%), Gaps = 48/335 (14%)

Query: 10  NKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLF 69
           + G      N  I+   K+  +E+A  IF+ M++K+  ++N MI  YA+N   + A  LF
Sbjct: 550 HGGRNTVTDNIMISCYLKNNCIEDAEVIFNHMAEKDLTSWNLMIQLYAQNHMDDQAFSLF 609

Query: 70  EQMPQR----NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELE 125
             +       +LVS  +++   +H   V+  R+    M R  L                 
Sbjct: 610 NHLQSEGLKPDLVSITNILEACIHLCSVQLVRQCHAYMLRASL----------------- 652

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
                       ED     A+V  Y+K GN   A  + + + SK++V++ +M+  Y  +G
Sbjct: 653 ------------EDIHLEGALVDAYSKCGNITNAYNIFE-VSSKDLVTFTAMIGCYAMHG 699

Query: 186 EMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV-----SW 236
               A + F  M + D+    V    +L        +D+  K F+ I E + V      +
Sbjct: 700 MAEKAVELFSKMIKLDIRPDHVVLTTLLSACSHAGLVDAGIKIFKSIGEIHRVVPTAEHY 759

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIR--NVVAWNAMIAAYVQRGQI---EEAARLFIEMP 291
             M+   AR+G + +A      MP    N  AW++++ A    G+I   + AA     M 
Sbjct: 760 ACMVDLLARSGHLQDAYMFALDMPPHAVNANAWSSLLGACKVHGEIKIGQLAADQLFSME 819

Query: 292 ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
           E +  ++  M + Y    K D    +   M  K++
Sbjct: 820 EGDIGNYVIMSNIYAADEKWDGVEHVRKLMKSKDM 854



 Score = 46.6 bits (109), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 8/138 (5%)

Query: 446 MTQEGKKADHSTLACALSACAHL--AALQLGRQIHHLAIKSGYV-NDLFVGNSLITMYA- 501
           M  EG +     LA A+ + + L      L R +H LA+KSG V +   V  +++  Y  
Sbjct: 63  MLAEGLRPGALELAAAIRSASALPGGGGALARCLHGLAVKSGRVASSATVAKAVMDAYGR 122

Query: 502 KCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA----PDPV 557
           + G + +A L+F +    D + WN LI   +  G   +A  LF  M+  GV     P  V
Sbjct: 123 RLGSLADALLVFDEMARPDAVCWNILITACSRRGLFEDAFVLFRSMLSCGVVEQSMPTAV 182

Query: 558 TFIGVLSACSHVGLVDGG 575
           T   ++ AC+  G +  G
Sbjct: 183 TVAVIVPACAKWGHLRTG 200


>gi|297828249|ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327846|gb|EFH58266.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 606

 Score =  331 bits (848), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 192/553 (34%), Positives = 305/553 (55%), Gaps = 25/553 (4%)

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLS 241
           E H+ S  F   E  D   WN ++  +    D   A   F  + E  V     S   +L 
Sbjct: 65  EYHVCS--FSPGEMEDPFLWNAVIKSHSHGKDPRQALLLFCLMLENGVSVDKFSLSLVLK 122

Query: 242 GYARNGRMLEARRLFDQMPIRNVVAW------NAMIAAYVQRGQIEEAARLFIEMPERNP 295
             +R G +    ++   +  R    W      N +I  Y++ G +  A ++F  MP+R+ 
Sbjct: 123 ACSRLGFVKGGMQIHGFL--RKTGLWSDLFLQNCLIGLYLKCGCLGFARQMFDRMPQRDS 180

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQMP--YKNIAAQTAMISGYVQNKR-MDEANQIFDKI 352
           VS+ +MI+GYV+   ++ AR L D MP   KN+ +  +MISGY Q    ++ A+++F ++
Sbjct: 181 VSYNSMINGYVKCGLIESARELFDLMPREMKNLISWNSMISGYAQTSEGVNIASKLFAEM 240

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFE 412
              D++ WN MI GY + GR+++A  LF  M  +D+VT  TMI GYA++  +  A  +F+
Sbjct: 241 PEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFD 300

Query: 413 EMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK-KADHSTLACALSACAHLAAL 471
           +M   R+ V++N++++G++QN+ H++AL+IF  M +E     D +TL   LSA A L  L
Sbjct: 301 QM-PLRDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRL 359

Query: 472 QLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGY 531
                +H   ++  +     +G +LI MY+KCG IQ+A L+F+  +   +  WN++I G 
Sbjct: 360 SKATDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGL 419

Query: 532 AINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL 591
           A++G    A  +  ++    + PD +TF+GVL+ACSH GLV  GL  FE M   + IEP 
Sbjct: 420 AVHGLGESAFNMLLQIERLSIIPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPR 479

Query: 592 VEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLS 651
           ++HY CM+D+LSR+G ++ A  +++ M I+PN  IW T L AC  H+  + G +  + L 
Sbjct: 480 LQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLI 539

Query: 652 ELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD 711
                  S Y LLSNM+A  G W +V +VR  M+    +K PGCSWIE+  ++H F    
Sbjct: 540 LQAGYNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHEFF--- 596

Query: 712 PKQCRTAEICNTL 724
                + E+ NTL
Sbjct: 597 ---VDSIEVSNTL 606



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/290 (34%), Positives = 161/290 (55%), Gaps = 13/290 (4%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F QN  I    K G +  A ++F +M Q+++V+YNSMI+ Y K G +  AR+LF+ M
Sbjct: 147 SDLFLQNCLIGLYLKCGCLGFARQMFDRMPQRDSVSYNSMINGYVKCGLIESARELFDLM 206

Query: 73  PQ--RNLVSWNSMIAGYLH-NDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARE 129
           P+  +NL+SWNSMI+GY   ++ V  A +LF +M   DL SW  MI  Y + G +E A+ 
Sbjct: 207 PREMKNLISWNSMISGYAQTSEGVNIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKG 266

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           LFD++P ++   C   M+ GYAK+G  ++AK L D MP +++V++NSM++GY +N     
Sbjct: 267 LFDVMPRRDVVTC-ATMIDGYAKLGFVHQAKTLFDQMPLRDVVAYNSMMAGYVQNKCHME 325

Query: 190 ASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV----SWVTML 240
           A + F  ME+      D  +  ++L    +L  L  A      I E+         V ++
Sbjct: 326 ALEIFNDMEKESHLSPDETTLVIILSAIAQLGRLSKATDMHLYIVEKQFYLGGKLGVALI 385

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
             Y++ G +  A  +F+ +  +++  WNAMI      G  E A  + +++
Sbjct: 386 DMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAVHGLGESAFNMLLQI 435



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 118/450 (26%), Positives = 208/450 (46%), Gaps = 58/450 (12%)

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           +L   N +I  YL    +  AR++FD+M + D  S+  MI  Y + G +E ARELFDL+P
Sbjct: 148 DLFLQNCLIGLYLKCGCLGFARQMFDRMPQRDSVSYNSMINGYVKCGLIESARELFDLMP 207

Query: 136 NK-EDTACWNAMVAGYAKIG-NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
            + ++   WN+M++GYA+     N A KL   MP K+++SWNSM+ GY K+G +  A   
Sbjct: 208 REMKNLISWNSMISGYAQTSEGVNIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKGL 267

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEAR 253
           F+ M  RDVV+   M+DGY +L  +  A   F ++P ++VV++ +M++GY +N   +EA 
Sbjct: 268 FDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPLRDVVAYNSMMAGYVQNKCHMEAL 327

Query: 254 RLFDQMPIRNVVAWNA-----MIAAYVQRGQIEEAARLFIEMPERNPV----SWTTMIDG 304
            +F+ M   + ++ +      +++A  Q G++ +A  + + + E+           +ID 
Sbjct: 328 EIFNDMEKESHLSPDETTLVIILSAIAQLGRLSKATDMHLYIVEKQFYLGGKLGVALIDM 387

Query: 305 YVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMI 364
           Y +   +  A  + + +  K+I    AMI G   +   + A  +  +I    ++  ++  
Sbjct: 388 YSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAVHGLGESAFNMLLQIERLSIIPDDITF 447

Query: 365 KGY----AQCGRMDEAINLFRQMVNKDIVT-----WNTMIAGYAQIRQMDDAVKIFEEMG 415
            G     +  G + E +  F  M  K  +      +  M+   ++   ++ A  + EEM 
Sbjct: 448 VGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMP 507

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
              N V W                                      L+AC+H    + G 
Sbjct: 508 IEPNDVIWRTF-----------------------------------LTACSHHKEFETGE 532

Query: 476 QI-HHLAIKSGYVNDLFVGNSLITMYAKCG 504
            +  HL +++GY    +V   L  MYA  G
Sbjct: 533 LVAKHLILQAGYNPSSYV--LLSNMYASFG 560



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 110/378 (29%), Positives = 186/378 (49%), Gaps = 23/378 (6%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR--PD 107
           N +I  Y K G +  AR++F++MPQR+ VS+NSMI GY+    ++ ARELFD M R   +
Sbjct: 153 NCLIGLYLKCGCLGFARQMFDRMPQRDSVSYNSMINGYVKCGLIESARELFDLMPREMKN 212

Query: 108 LFSWALMITCYTRKGE-LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           L SW  MI+ Y +  E +  A +LF  +P K D   WN+M+ GY K G   +AK L D M
Sbjct: 213 LISWNSMISGYAQTSEGVNIASKLFAEMPEK-DLISWNSMIDGYVKHGRIEDAKGLFDVM 271

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
           P +++V+  +M+ GY K G +H A   F+ M  RDVV++N M+ GYV+      A + F 
Sbjct: 272 PRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPLRDVVAYNSMMAGYVQNKCHMEALEIFN 331

Query: 227 KIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN----AMIAAYVQR 277
            + +++ +S      V +LS  A+ GR+ +A  +   +  +          A+I  Y + 
Sbjct: 332 DMEKESHLSPDETTLVIILSAIAQLGRLSKATDMHLYIVEKQFYLGGKLGVALIDMYSKC 391

Query: 278 GQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYV 337
           G I+ A  +F  +  ++   W  MI G       + A  +L Q+   +I        G +
Sbjct: 392 GSIQHAMLVFEGIENKSIDHWNAMIGGLAVHGLGESAFNMLLQIERLSIIPDDITFVGVL 451

Query: 338 ----QNKRMDEANQIFDKIGTHDVV-----CWNVMIKGYAQCGRMDEAINLFRQM-VNKD 387
                +  + E    F+ +     +      +  M+   ++ G ++ A NL  +M +  +
Sbjct: 452 NACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPN 511

Query: 388 IVTWNTMIAGYAQIRQMD 405
            V W T +   +  ++ +
Sbjct: 512 DVIWRTFLTACSHHKEFE 529



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 153/329 (46%), Gaps = 21/329 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I    K GR+E+A  +F  M +++ VT  +MI  YAK G V+ A+ LF+QMP R++V
Sbjct: 249 NSMIDGYVKHGRIEDAKGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQMPLRDVV 308

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFDL 133
           ++NSM+AGY+ N    EA E+F+ M       PD  +  ++++   + G L KA ++   
Sbjct: 309 AYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRLSKATDMHLY 368

Query: 134 LPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           +  K+         A++  Y+K G+   A  + + + +K+I  WN+M+ G   +G    A
Sbjct: 369 IVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAVHGLGESA 428

Query: 191 SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWK----FFQKIPEQNVVS-----WVTMLS 241
                 +E   ++  ++   G +         K     F+ +  ++ +      +  M+ 
Sbjct: 429 FNMLLQIERLSIIPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVD 488

Query: 242 GYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEA---ARLFIEMPERNPVS 297
             +R+G +  A+ L ++MPI  N V W   + A     + E     A+  I     NP S
Sbjct: 489 ILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSS 548

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
           +  + + Y       + RR+   M  + I
Sbjct: 549 YVLLSNMYASFGMWKDVRRVRTMMKERKI 577



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 146/290 (50%), Gaps = 18/290 (6%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHN 90
           V  A K+F++M +K+ +++NSMI  Y K+GR+ DA+ LF+ MP+R++V+  +MI GY   
Sbjct: 230 VNIASKLFAEMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTCATMIDGYAKL 289

Query: 91  DKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE----DTACWNAM 146
             V +A+ LFD+M   D+ ++  M+  Y +     +A E+F+ +  +     D      +
Sbjct: 290 GFVHQAKTLFDQMPLRDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVII 349

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWN----SMLSGYTKNGEMHLASKFFEAMEERDV 202
           ++  A++G  ++A  +   +  K          +++  Y+K G +  A   FE +E + +
Sbjct: 350 LSAIAQLGRLSKATDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSI 409

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFDQ 258
             WN M+ G       +SA+    +I   ++    +++V +L+  + +G + E    F+ 
Sbjct: 410 DHWNAMIGGLAVHGLGESAFNMLLQIERLSIIPDDITFVGVLNACSHSGLVKEGLLCFEL 469

Query: 259 MPIRNVVA-----WNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMI 302
           M  ++ +      +  M+    + G IE A  L  EMP E N V W T +
Sbjct: 470 MRRKHKIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFL 519


>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
          Length = 1012

 Score =  331 bits (848), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 196/631 (31%), Positives = 326/631 (51%), Gaps = 64/631 (10%)

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM- 197
           D  C N ++  Y K+G    A++L D MP +N+VS+ +++  + + G+   A+  F  + 
Sbjct: 95  DLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLR 154

Query: 198 -EERDVVSWNL--MLDGYVELDDL-------DSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
            E  +V  + L  ML   + +D           AWK      + N      ++  Y+   
Sbjct: 155 WEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGH---DHNAFVGSGLIDAYSLCS 211

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTT--- 300
            + +A  +F+ +  ++ V W AM++ Y +    E A R+F +M     + NP + T+   
Sbjct: 212 LVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLK 271

Query: 301 --------------------------------MIDGYVRIAKLDEARRLLDQMPYKNIAA 328
                                           ++D Y +   + +AR   + +PY ++  
Sbjct: 272 AAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVIL 331

Query: 329 QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ-CGRMDEAINLFRQMVN-- 385
            + MIS Y Q+ + ++A ++F ++    V+     +    Q C  M + ++  +Q+ N  
Sbjct: 332 LSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQ-LDFGKQIHNHA 390

Query: 386 ------KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDA 439
                  D+   N ++  YA+   MD ++KIF  + +  N VSWN ++ GF Q+    +A
Sbjct: 391 IKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSL-RDANEVSWNTIVVGFSQSGLGEEA 449

Query: 440 LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
           L +F  M          T +  L ACA  A+++   QIH    KS + ND  +GNSLI  
Sbjct: 450 LSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDT 509

Query: 500 YAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTF 559
           YAKCG I++A  +F+     D+ISWN++I+GYA++G A +A++LF+ M    V  + +TF
Sbjct: 510 YAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITF 569

Query: 560 IGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMK 619
           + +LS CS  GLV+ GL LF+ M   + I+P +EHY C++ LL RAGRL++A + +  + 
Sbjct: 570 VALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIP 629

Query: 620 IKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEK 679
             P+A +W  LL +C +H+N+ LGR + EK+ E+EPQ  + Y LLSNM+A AG  D+V  
Sbjct: 630 SAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVAL 689

Query: 680 VRVSMEGSGAQKQPGCSWIEVKNQIHTFLSG 710
           +R SM   G +K PG SW+E+K +IH F  G
Sbjct: 690 LRKSMRNIGVRKVPGLSWVEIKGEIHAFSVG 720



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 121/578 (20%), Positives = 246/578 (42%), Gaps = 72/578 (12%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           N +++ Y K G +  AR+LF++MP+RN+VS+ +++  +      + A  LF ++      
Sbjct: 100 NVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHE 159

Query: 106 PDLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNEAKKL 162
            + F    M+           A  +      L +  +    + ++  Y+     ++A+ +
Sbjct: 160 VNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHV 219

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDL 218
            + +  K+ V W +M+S Y++N     A + F  M     + +  +   +L   V L  +
Sbjct: 220 FNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSV 279

Query: 219 -------DSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
                    A K      E +V     +L  YA+ G + +AR  F+ +P  +V+  + MI
Sbjct: 280 VLGKGIHGCAIKTLNDT-EPHVGG--ALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMI 336

Query: 272 AAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQM----PY 323
           + Y Q  Q E+A  LF+ +       N  S ++++     + +LD  +++ +        
Sbjct: 337 SRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHE 396

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
            ++    A++  Y +   MD + +IF  +   + V WN ++ G++Q G  +EA+++F +M
Sbjct: 397 SDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEM 456

Query: 384 ---------------------------------------VNKDIVTWNTMIAGYAQIRQM 404
                                                   N D V  N++I  YA+   +
Sbjct: 457 QAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYI 516

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSA 464
            DA+K+F+ +   R+ +SWNA+ISG+  +    DAL++F  M +   +++  T    LS 
Sbjct: 517 RDALKVFQHL-MERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSV 575

Query: 465 CAHLAALQLGRQIH-HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV-DVI 522
           C+    +  G  +   + I  G    +     ++ +  + GR+ +A     D       +
Sbjct: 576 CSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAM 635

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
            W +L++   I+ N     +   E ++E    D  T++
Sbjct: 636 VWRALLSSCIIHKNVALG-RFSAEKILEIEPQDETTYV 672



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/450 (20%), Positives = 202/450 (44%), Gaps = 69/450 (15%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           N    + +I AY+    V+DA  +F  + +++ V W +M++ Y  ND  + A  +F KM 
Sbjct: 196 NAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMR 255

Query: 104 ---FRPDLFSW-----------------------------------ALMITCYTRKGELE 125
               +P+ F+                                      ++  Y + G+++
Sbjct: 256 VSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIK 315

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK-----KLLDAMPSKNIVSWNSMLSG 180
            AR  F+++P  +D    + M++ YA+  N NE       +L+ +    N  S +S+L  
Sbjct: 316 DARLAFEMIP-YDDVILLSFMISRYAQ-SNQNEQAFELFLRLMRSSVLPNEYSLSSVLQA 373

Query: 181 YTKNGEMHLASKF----FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSW 236
            T   ++    +      +   E D+   N ++D Y + +D+DS+ K F  + + N VSW
Sbjct: 374 CTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSW 433

Query: 237 VTMLSGYARNGRMLEARRLF-----DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
            T++ G++++G   EA  +F      QMP    V +++++ A      I  A ++   + 
Sbjct: 434 NTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQ-VTYSSVLRACASTASIRHAGQIHCSIE 492

Query: 292 E----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347
           +     + V   ++ID Y +   + +A ++   +  ++I +  A+ISGY  + +  +A +
Sbjct: 493 KSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALE 552

Query: 348 IFDKIGTHDV----VCWNVMIKGYAQCGRMDEAINLFRQM-----VNKDIVTWNTMIAGY 398
           +FD++   +V    + +  ++   +  G ++  ++LF  M     +   +  +  ++   
Sbjct: 553 LFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLL 612

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
            +  +++DA++   ++    + + W AL+S
Sbjct: 613 GRAGRLNDALQFIGDIPSAPSAMVWRALLS 642



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 180/395 (45%), Gaps = 61/395 (15%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----P 106
           +++  YAK G + DAR  FE +P  +++  + MI+ Y  +++ ++A ELF ++ R    P
Sbjct: 303 ALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLP 362

Query: 107 DLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           + +S + ++   T   +L+  +++ +    + ++ D    NA++  YAK  + + + K+ 
Sbjct: 363 NEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIF 422

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME------------------------- 198
            ++   N VSWN+++ G++++G    A   F  M+                         
Sbjct: 423 SSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIR 482

Query: 199 --------------ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYA 244
                           D V  N ++D Y +   +  A K FQ + E++++SW  ++SGYA
Sbjct: 483 HAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYA 542

Query: 245 RNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS--- 297
            +G+  +A  LFD+M   NV    + + A+++     G +     LF  M   + +    
Sbjct: 543 LHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSM 602

Query: 298 --WTTMIDGYVRIAKLDEARRLLDQMPYKNIA-AQTAMISGYVQNKRMD----EANQIFD 350
             +T ++    R  +L++A + +  +P    A    A++S  + +K +      A +I +
Sbjct: 603 EHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILE 662

Query: 351 KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
            I   D   + ++   YA  G +D+   L + M N
Sbjct: 663 -IEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRN 696



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 116/268 (43%), Gaps = 38/268 (14%)

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIF 411
           +G  D+ C NV++  Y + G +  A  LF +M  +++V++ T++  +AQ    + A  +F
Sbjct: 91  VGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALF 150

Query: 412 EEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAAL 471
             +        W                         EG + +   L   L     + A 
Sbjct: 151 RRL-------RW-------------------------EGHEVNQFVLTTMLKLAIAMDAA 178

Query: 472 QLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGY 531
            L   +H  A K G+ ++ FVG+ LI  Y+ C  + +AE +F      D + W ++++ Y
Sbjct: 179 GLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCY 238

Query: 532 AINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC-MTEVYAIEP 590
           + N     A ++F +M + G  P+P     VL A   +  V  G  +  C +  +   EP
Sbjct: 239 SENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEP 298

Query: 591 LVEHYACMIDLLSRAGRLDE---AFEMV 615
            V     ++D+ ++ G + +   AFEM+
Sbjct: 299 HVG--GALLDMYAKCGDIKDARLAFEMI 324



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 99/191 (51%), Gaps = 20/191 (10%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           +TV  NS+I  YAK G + DA K+F+ + +R+++SWN++I+GY  + +  +A ELFD+M 
Sbjct: 499 DTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMN 558

Query: 105 RPDL----FSWALMITCYTRKGELEKARELFDLL-------PNKEDTACWNAMVAGYAKI 153
           + ++     ++  +++  +  G +     LFD +       P+ E   C   +V    + 
Sbjct: 559 KSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTC---IVRLLGRA 615

Query: 154 GNYNEAKKLLDAMPS-KNIVSWNSMLSGYTKNGEMHL----ASKFFEAMEERDVVSWNLM 208
           G  N+A + +  +PS  + + W ++LS    +  + L    A K  E +E +D  ++ L+
Sbjct: 616 GRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILE-IEPQDETTYVLL 674

Query: 209 LDGYVELDDLD 219
            + Y     LD
Sbjct: 675 SNMYAAAGSLD 685



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 81/163 (49%), Gaps = 15/163 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  I    K G + +A+K+F  + +++ +++N++IS YA +G+  DA +LF++M + N+ 
Sbjct: 504 NSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVE 563

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARE 129
              +++ ++++       V     LFD M      +P +  +  ++    R G L  A +
Sbjct: 564 SNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQ 623

Query: 130 LFDLLPNKEDTACWNAMVAGY-----AKIGNYNEAKKLLDAMP 167
               +P+      W A+++         +G ++ A+K+L+  P
Sbjct: 624 FIGDIPSAPSAMVWRALLSSCIIHKNVALGRFS-AEKILEIEP 665


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  331 bits (848), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 199/600 (33%), Positives = 311/600 (51%), Gaps = 97/600 (16%)

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV---VAWNAMIAAYVQRGQIEEAARL 286
           E NV     ++S Y R G    AR++FD+M  R V   V+WN+++AAY+Q G    A ++
Sbjct: 158 EWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKM 217

Query: 287 FIEMPERNPV------------------SWT----------------------TMIDGYV 306
           F  M E   +                  +W+                       ++D Y 
Sbjct: 218 FERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYA 277

Query: 307 RIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNV 362
           +   ++EA ++ ++M  K++ +  AM++GY Q  R D+A  +F+KI       +VV W+ 
Sbjct: 278 KCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSA 337

Query: 363 MIKGYAQCGRMDEAINLFRQM--------------------------------------- 383
           +I GYAQ G   EA+++FRQM                                       
Sbjct: 338 VIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWI 397

Query: 384 -------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMG-KRRNTVSWNALISGFLQNEF 435
                     D++  N +I  Y++ +    A  +F+ +  K R+ V+W  LI G  Q+  
Sbjct: 398 LNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGE 457

Query: 436 HLDALKIFVLMTQEGK--KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND-LFV 492
             +AL++F  M Q       +  T++CAL ACA L AL+ GRQIH   +++ + +  LFV
Sbjct: 458 ANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFV 517

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
            N LI MY+K G +  A ++F +    + +SW SL+ GY ++G   EA+++F EM   G+
Sbjct: 518 ANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGL 577

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
            PD VTF+ VL ACSH G+VD G+  F  M + + + P  EHYACM+DLLSRAGRLDEA 
Sbjct: 578 VPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAM 637

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672
           E+++GM +KP   +W  LL ACR++ N++LG  A  +L ELE      Y LLSN++A A 
Sbjct: 638 ELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANAR 697

Query: 673 RWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            W +V ++R  M+ +G +K+PGCSW++ +    TF +GD     + +I + L+ L  +I+
Sbjct: 698 CWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIK 757



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 115/423 (27%), Positives = 206/423 (48%), Gaps = 43/423 (10%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR---NLVSWNSMIAGYLHNDKV 93
           +F+   + N    N ++S Y + G   +AR++F++M +R   +LVSWNS++A Y+     
Sbjct: 152 VFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDS 211

Query: 94  KEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNA 145
             A ++F++M      RPD  S   ++      G   + +++          ED    NA
Sbjct: 212 IRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNA 271

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----D 201
           +V  YAK G   EA K+ + M  K++VSWN+M++GY++ G    A   FE + E     +
Sbjct: 272 VVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELN 331

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSGYARNGRMLEARR--- 254
           VV+W+ ++ GY +      A   F+++     E NVV+ V++LSG A  G +L  +    
Sbjct: 332 VVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHC 391

Query: 255 --------LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP--ERNPVSWTTMIDG 304
                   L +  P  +++  NA+I  Y +    + A  +F  +P  +R+ V+WT +I G
Sbjct: 392 HAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGG 451

Query: 305 YVRIAKLDEARRLLDQM--PYKNIAAQTAMIS---------GYVQNKRMDEANQIFDKIG 353
             +  + +EA  L  QM  P   +      IS         G ++  R   A  + ++  
Sbjct: 452 NAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFE 511

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEE 413
           +  +   N +I  Y++ G +D A  +F  M  ++ V+W +++ GY    + ++A++IF E
Sbjct: 512 SAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYE 571

Query: 414 MGK 416
           M K
Sbjct: 572 MQK 574



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 176/385 (45%), Gaps = 71/385 (18%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  N  +    K G +EEA K+F +M  K+ V++N+M++ Y++ GR +DA  LFE++ +
Sbjct: 266 VFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIRE 325

Query: 75  R----NLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEK 126
                N+V+W+++IAGY       EA ++F +M      P++ +   +++     G L  
Sbjct: 326 EKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLH 385

Query: 127 ARE--------LFDLLPNK--EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN--IVSW 174
            +E        + +L  N   +D    NA++  Y+K  +   A+ + D +P K+  +V+W
Sbjct: 386 GKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTW 445

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERD--------------------------------- 201
             ++ G  ++GE + A + F  M + D                                 
Sbjct: 446 TVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYV 505

Query: 202 ---------VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA 252
                    +   N ++D Y +  D+D+A   F  + ++N VSW ++++GY  +GR  EA
Sbjct: 506 LRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEA 565

Query: 253 RRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-----SWTTMID 303
            ++F +M     + + V +  ++ A    G +++    F  M +   V      +  M+D
Sbjct: 566 LQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVD 625

Query: 304 GYVRIAKLDEARRLLDQMPYKNIAA 328
              R  +LDEA  L+  MP K   A
Sbjct: 626 LLSRAGRLDEAMELIRGMPMKPTPA 650



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 136/261 (52%), Gaps = 7/261 (2%)

Query: 367 YAQCGRMDEAINLFRQMVNKDIVTWNT-MIAGYAQIRQMDDAVKIFEEMGKRRNTVSW-N 424
           + QC  +  A  + +Q++ + +    T +I+ Y        A+ +   +    +TV W N
Sbjct: 36  FHQCKSLASAELIHQQLLVQGLPHDPTHIISMYLTFNSPAKALSVLRRLHPSSHTVFWWN 95

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
            LI   +   F  D L+++  M + G + DH T    L AC  + + + G  +H +   S
Sbjct: 96  QLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFAS 155

Query: 485 GYVNDLFVGNSLITMYAKCGRIQNAELLF---KDADPVDVISWNSLIAGYAINGNATEAI 541
           G+  ++FVGN L++MY +CG  +NA  +F   ++    D++SWNS++A Y   G++  A+
Sbjct: 156 GFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAM 215

Query: 542 KLFEEMVME-GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMID 600
           K+FE M  + G+ PD V+ + VL AC+ VG    G ++          E +    A ++D
Sbjct: 216 KMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNA-VVD 274

Query: 601 LLSRAGRLDEAFEMVKGMKIK 621
           + ++ G ++EA ++ + MK+K
Sbjct: 275 MYAKCGMMEEANKVFERMKVK 295



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 136/281 (48%), Gaps = 25/281 (8%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMP--QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPD 107
           N++I  Y+K      AR +F+ +P   R++V+W  +I G   + +  EA ELF +M +PD
Sbjct: 413 NALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPD 472

Query: 108 LFSW--ALMITCY----TRKGELEKARELFD-LLPNKEDTACW---NAMVAGYAKIGNYN 157
            F    A  I+C      R G L   R++   +L N+ ++A     N ++  Y+K G+ +
Sbjct: 473 NFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVD 532

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE----RDVVSWNLMLDGYV 213
            A+ + D M  +N VSW S+++GY  +G    A + F  M++     D V++ ++L    
Sbjct: 533 AARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACS 592

Query: 214 ELDDLDSAWKFFQKIPEQNVV-----SWVTMLSGYARNGRMLEARRLFDQMPIRNVVA-W 267
               +D    +F  + +   V      +  M+   +R GR+ EA  L   MP++   A W
Sbjct: 593 HSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVW 652

Query: 268 NAMIAA---YVQRGQIEEAARLFIEMPERNPVSWTTMIDGY 305
            A+++A   Y      E AA   +E+   N  S+T + + Y
Sbjct: 653 VALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIY 693



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 15/164 (9%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F  N  I    KSG V+ A  +F  M Q+N V++ S+++ Y  +GR  +A ++F +M +
Sbjct: 515 LFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQK 574

Query: 75  RNL----VSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELE 125
             L    V++  ++    H+  V +    F+ M +     P    +A M+   +R G L+
Sbjct: 575 VGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLD 634

Query: 126 KARELFDLLPNKEDTACWNAMVAG---YA--KIGNYNEAKKLLD 164
           +A EL   +P K   A W A+++    YA  ++G Y  A +LL+
Sbjct: 635 EAMELIRGMPMKPTPAVWVALLSACRVYANVELGEY-AANQLLE 677


>gi|297741566|emb|CBI32698.3| unnamed protein product [Vitis vinifera]
          Length = 493

 Score =  331 bits (848), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 174/464 (37%), Positives = 276/464 (59%), Gaps = 12/464 (2%)

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEA 314
           MP RNVV+W ++IA Y Q GQ   A   + +M +     +  ++ ++I     +  +   
Sbjct: 1   MPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLG 60

Query: 315 RRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC 370
           R+L    L      +I AQ A+IS Y ++  + +A  +F ++ T D++ W  MI G++Q 
Sbjct: 61  RQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQL 120

Query: 371 GRMDEAINLFRQMVNK---DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
           G   EA+  F++M+++   D+V WN +IAG+A   ++ DA+  FEEM    + VSWNA++
Sbjct: 121 GYELEALCYFKEMLHQGRPDLVAWNAIIAGFAY-GELRDAIFFFEEMRCNADLVSWNAIL 179

Query: 428 SGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV 487
           +  ++++   +  ++  LM     + D+ TL   L A A   ++++G Q+H  A+K+G  
Sbjct: 180 TACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLN 239

Query: 488 NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
            D  V N LI +YAKCG ++ A  +F      DV+SW+SLI GYA  G   EA+KLF+ M
Sbjct: 240 CDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTM 299

Query: 548 VMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGR 607
               V P+ VTF+GVL+ACSHVGLV+ G KL+  M + + I P  EH +CM+DLL+RAG 
Sbjct: 300 RRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGC 359

Query: 608 LDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNM 667
           L+EA   +  M   P+  +W TLL AC+ H N+ +G+ A E + +++P  ++ + LL N+
Sbjct: 360 LNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENILKIDPSNSAAHVLLCNI 419

Query: 668 HAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD 711
           +A  G W++V ++R  M+  G +K PG SWIEVK++IH F   D
Sbjct: 420 YASKGNWEDVARLRSLMKQRGVRKVPGQSWIEVKDRIHVFFVED 463



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/425 (24%), Positives = 191/425 (44%), Gaps = 88/425 (20%)

Query: 166 MPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----------------------- 202
           MP +N+VSW S+++GY++NG+   A +F+  M +  V                       
Sbjct: 1   MPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLG 60

Query: 203 ----------------VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARN 246
                           ++ N ++  Y + + +  A   F ++  ++++SW +M++G+++ 
Sbjct: 61  RQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQL 120

Query: 247 GRMLEARRLFDQMPIR---NVVAWNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMI 302
           G  LEA   F +M  +   ++VAWNA+IA +   G++ +A   F EM    + VSW  ++
Sbjct: 121 GYELEALCYFKEMLHQGRPDLVAWNAIIAGFAY-GELRDAIFFFEEMRCNADLVSWNAIL 179

Query: 303 DGYVRIAKLDEARRLLDQMPYK----NIAAQTAMISGYVQNKRMDEANQIFD---KIGTH 355
              +R  + +E  RLL  M       +    T ++    +   ++  NQ+     K G +
Sbjct: 180 TACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLN 239

Query: 356 -DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            D    N +I  YA+CG +  A  +F  M+N D+V+W+++I GYAQ    ++A+K+F+ M
Sbjct: 240 CDTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTM 299

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
             RR  V                              K +H T    L+AC+H+  ++ G
Sbjct: 300 --RRLDV------------------------------KPNHVTFVGVLTACSHVGLVEEG 327

Query: 475 RQIHHLAIKS-GYVNDLFVGNSLITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGY 531
            +++    K  G        + ++ + A+ G +  AE        DP D++ W +L+A  
Sbjct: 328 WKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFDP-DIVVWKTLLAAC 386

Query: 532 AINGN 536
             +GN
Sbjct: 387 KTHGN 391



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 172/385 (44%), Gaps = 61/385 (15%)

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKA 127
           MP+RN+VSW S+IAGY  N +   A E + +M +    PD F++  +I   +  G++   
Sbjct: 1   MPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLG 60

Query: 128 RELFDLLPNKEDTA---CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
           R+L   +   E  A     NA+++ Y K     +A  +   M +++++SW SM++G+++ 
Sbjct: 61  RQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQL 120

Query: 185 GEMHLASKFFEAMEER---DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
           G    A  +F+ M  +   D+V+WN ++ G+   +  D+ + F +     ++VSW  +L+
Sbjct: 121 GYELEALCYFKEMLHQGRPDLVAWNAIIAGFAYGELRDAIFFFEEMRCNADLVSWNAILT 180

Query: 242 GYARNGRMLEARRLF----------DQMPIRNVVA------------------------- 266
              R+ +  E  RL           D + + NV+                          
Sbjct: 181 ACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNC 240

Query: 267 ----WNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
                N +I  Y + G ++ A ++F  M   + VSW+++I GY +    +EA +L   M 
Sbjct: 241 DTSVTNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMR 300

Query: 323 YKNIAAQTAMISGYV----QNKRMDEANQIFDK------IGTHDVVCWNVMIKGYAQCGR 372
             ++        G +        ++E  +++        I      C + M+   A+ G 
Sbjct: 301 RLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHC-SCMVDLLARAGC 359

Query: 373 MDEAINLFRQMV-NKDIVTWNTMIA 396
           ++EA     QM  + DIV W T++A
Sbjct: 360 LNEAEGFIHQMAFDPDIVVWKTLLA 384



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 84/370 (22%), Positives = 169/370 (45%), Gaps = 56/370 (15%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G+++  QN  I+   KS  + +A+ +FS+M+ ++ +++ SMI+ +++ G   +A   F++
Sbjct: 73  GAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKE 132

Query: 72  MPQR---NLVSWNSMIAGYLHNDKVKEARELFDKM-FRPDLFSWALMITCYTRKGELEKA 127
           M  +   +LV+WN++IAG+ + + +++A   F++M    DL SW  ++T   R  + E+ 
Sbjct: 133 MLHQGRPDLVAWNAIIAGFAYGE-LRDAIFFFEEMRCNADLVSWNAILTACMRHDQAEEV 191

Query: 128 RELFDLLPNKE--------------------------------------DTACWNAMVAG 149
             L  L+   +                                      DT+  N ++  
Sbjct: 192 FRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDTSVTNGLIDL 251

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSW 205
           YAK G+   A K+ D+M + ++VSW+S++ GY + G    A K F+ M   DV    V++
Sbjct: 252 YAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTF 311

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV-----TMLSGYARNGRMLEARRLFDQMP 260
             +L     +  ++  WK +  + ++  ++        M+   AR G + EA     QM 
Sbjct: 312 VGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMA 371

Query: 261 IR-NVVAWNAMIAAYVQRGQIE---EAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
              ++V W  ++AA    G ++    AA   +++   N  +   + + Y      ++  R
Sbjct: 372 FDPDIVVWKTLLAACKTHGNVDVGKRAAENILKIDPSNSAAHVLLCNIYASKGNWEDVAR 431

Query: 317 LLDQMPYKNI 326
           L   M  + +
Sbjct: 432 LRSLMKQRGV 441


>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
          Length = 695

 Score =  331 bits (848), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 190/580 (32%), Positives = 312/580 (53%), Gaps = 25/580 (4%)

Query: 169 KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI 228
           K  V W S L G+        A K F  + E DVV WN M+ G+ ++D      + +  +
Sbjct: 71  KLFVFWCSRLGGHVS-----YAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNM 125

Query: 229 PEQNVV----SWVTMLSGYARNGRMLEARRLFDQMPIR-----NVVAWNAMIAAYVQRGQ 279
            ++ V     ++  +L+G  R+G  L   +      ++     N+   NA++  Y   G 
Sbjct: 126 LKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGL 185

Query: 280 IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAM-----IS 334
           ++ A  +F    + +  SW  MI GY R+ + +E+  LL +M  +N+ + T++     +S
Sbjct: 186 MDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEME-RNLVSPTSVTLLLVLS 244

Query: 335 GYVQNKRMDEANQIFDKIGT----HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
              + K  D   ++ + +        +   N ++  YA CG MD A+ +FR M  +D+++
Sbjct: 245 ACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVIS 304

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
           W +++ GY +   +  A   F++M   R+ +SW  +I G+L+     ++L+IF  M   G
Sbjct: 305 WTSIVKGYVERGNLKLARTYFDQM-PVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAG 363

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
              D  T+   L+ACAHL +L++G  I     K+   ND+ VGN+LI MY KCG  + A+
Sbjct: 364 MIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQ 423

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
            +F D D  D  +W +++ G A NG   EAIK+F +M    + PD +T++GVLSAC+H G
Sbjct: 424 KVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSG 483

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
           +VD   K F  M   + IEP + HY CM+D+L RAG + EA+E+++ M + PN+ +WG L
Sbjct: 484 MVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGAL 543

Query: 631 LGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQ 690
           LGA R+H +  +  +A +K+ ELEP   + YALL N++A   RW ++ +VR  +     +
Sbjct: 544 LGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIK 603

Query: 691 KQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQ 730
           K PG S IEV    H F++GD    ++ EI   L+ LA +
Sbjct: 604 KTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMKLEELAQE 643



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/416 (25%), Positives = 187/416 (44%), Gaps = 63/416 (15%)

Query: 60  GRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMI 115
           G V+ A KLF ++P+ ++V WN+MI G+   D   E   L+  M +    PD  ++  ++
Sbjct: 82  GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141

Query: 116 T----------------CYTRK--------------------GELEKARELFDLLPNKED 139
                            C+  K                    G ++ AR +FD    KED
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFD-RRCKED 200

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNS-----MLSGYTKNGEMHLASKFF 194
              WN M++GY ++  Y E+ +LL  M  +N+VS  S     +LS  +K  +  L  +  
Sbjct: 201 VFSWNLMISGYNRMKEYEESIELLVEM-ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVH 259

Query: 195 EAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRML 250
           E +     E  +   N +++ Y    ++D A + F+ +  ++V+SW +++ GY   G + 
Sbjct: 260 EYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLK 319

Query: 251 EARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-SWTTMIDGYVRIA 309
            AR  FDQMP+R+ ++W  MI  Y++ G   E+  +F EM     +    TM+      A
Sbjct: 320 LARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACA 379

Query: 310 KLDE------ARRLLDQMPYKN-IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNV 362
            L         +  +D+   KN +    A+I  Y +    ++A ++F  +   D   W  
Sbjct: 380 HLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTA 439

Query: 363 MIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           M+ G A  G+  EAI +F QM    +  D +T+  +++       +D A K F +M
Sbjct: 440 MVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKM 495



 Score =  134 bits (336), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 188/378 (49%), Gaps = 25/378 (6%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           N    N+++  Y+  G ++ AR +F++  + ++ SWN MI+GY    + +E+ EL  +M 
Sbjct: 169 NLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEME 228

Query: 105 R----PDLFSWALMITCYTR---KGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYN 157
           R    P   +  L+++  ++   K   ++  E       +      NA+V  YA  G  +
Sbjct: 229 RNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMD 288

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDD 217
            A ++  +M +++++SW S++ GY + G + LA  +F+ M  RD +SW +M+DGY+    
Sbjct: 289 IAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGC 348

Query: 218 LDSAWKFFQKIPEQNVV----SWVTMLSGYARNGRMLEA---RRLFDQMPIRN-VVAWNA 269
            + + + F+++    ++    + V++L+  A  G +      +   D+  I+N VV  NA
Sbjct: 349 FNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNA 408

Query: 270 MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
           +I  Y + G  E+A ++F +M +R+  +WT M+ G     +  EA ++  QM   +I   
Sbjct: 409 LIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPD 468

Query: 330 T----AMISGYVQNKRMDEANQIFDKIGTH-----DVVCWNVMIKGYAQCGRMDEAINLF 380
                 ++S    +  +D+A + F K+ +       +V +  M+    + G + EA  + 
Sbjct: 469 DITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEIL 528

Query: 381 RQM-VNKDIVTWNTMIAG 397
           R+M +N + + W  ++  
Sbjct: 529 RKMPMNPNSIVWGALLGA 546



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 148/322 (45%), Gaps = 23/322 (7%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           +N  +      G ++ A++IF  M  ++ +++ S++  Y + G +  AR  F+QMP R+ 
Sbjct: 274 ENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDR 333

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKA---REL 130
           +SW  MI GYL      E+ E+F +M      PD F+   ++T     G LE     +  
Sbjct: 334 ISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTY 393

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
            D    K D    NA++  Y K G   +A+K+   M  ++  +W +M+ G   NG+   A
Sbjct: 394 IDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEA 453

Query: 191 SKFFEAMEERDVVSWNLMLDGYVELDD----LDSAWKFFQKIP-----EQNVVSWVTMLS 241
            K F  M++  +   ++   G +   +    +D A KFF K+      E ++V +  M+ 
Sbjct: 454 IKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVD 513

Query: 242 GYARNGRMLEARRLFDQMPIR-NVVAWNAMIAA---YVQRGQIEEAARLFIEMPERNPVS 297
              R G + EA  +  +MP+  N + W A++ A   +      E AA+  +E+   N   
Sbjct: 514 MLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAV 573

Query: 298 WTTMIDGYV---RIAKLDEARR 316
           +  + + Y    R   L E RR
Sbjct: 574 YALLCNIYAGCKRWKDLREVRR 595



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 36/166 (21%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMS----QKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           F     +  L  +G+ +EAIK+F QM     Q + +TY  ++SA   +G V+ ARK F +
Sbjct: 435 FTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAK 494

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           M                            D    P L  +  M+    R G +++A E+ 
Sbjct: 495 MRS--------------------------DHRIEPSLVHYGCMVDMLGRAGLVKEAYEIL 528

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNE-----AKKLLDAMPSKNIV 172
             +P   ++  W A++ G +++ N        AKK+L+  P    V
Sbjct: 529 RKMPMNPNSIVWGALL-GASRLHNDEPMAELAAKKILELEPDNGAV 573


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  331 bits (848), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 191/548 (34%), Positives = 296/548 (54%), Gaps = 18/548 (3%)

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQK-------IPEQNVVSWV-TMLSGYARNGRMLEA 252
           +V SWN+ + GYVE ++  +A   ++        IP+      +  + +G++ +    E 
Sbjct: 118 NVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEI 177

Query: 253 RRLFDQMPI-RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKL 311
                Q+    ++   NA+I   V  G++  A +LF E   R+ VSW ++I+GYVR    
Sbjct: 178 LGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLA 237

Query: 312 DEARRLLDQMPYKNIAAQTAMISGYVQNKRMDE-------ANQIFDKIGTH-DVVCWNVM 363
           DEA  L  +M   N+      + G V      E        +Q  +++G +  V   N +
Sbjct: 238 DEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANAL 297

Query: 364 IKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
           +  Y +C  ++ A  LF  M  K +V+W TM+ GYA+   ++ AV++F EM   ++ V W
Sbjct: 298 MDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEM-PEKDVVLW 356

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
           NALI GF+Q +   +AL +F  M       D  T+   LSAC+ L AL +G  +HH   K
Sbjct: 357 NALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDK 416

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
                ++ +G +L+ MYAKCG I+ A  +F++    + ++W ++I G A++G    AI  
Sbjct: 417 HNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISY 476

Query: 544 FEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLS 603
           F EM+  G+ PD +TFIGVLSAC H GLVD G   F  MT  Y I P ++HY+C++DLL 
Sbjct: 477 FSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLG 536

Query: 604 RAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYAL 663
           RAG L+EA E+++ M  +P+A +WG L    R+H N+ +G  A  KL EL+P     Y L
Sbjct: 537 RAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIYVL 596

Query: 664 LSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNT 723
           L+NM+ +A  W++  KVR  ME  G +K PGCS IE+   ++ F+  D    ++ +I   
Sbjct: 597 LANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVYDFIIRDKSHPQSEKIYEC 656

Query: 724 LKTLAAQI 731
           L  L  QI
Sbjct: 657 LTRLTRQI 664



 Score =  139 bits (351), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 131/523 (25%), Positives = 214/523 (40%), Gaps = 112/523 (21%)

Query: 67  KLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALM------- 114
           K+       N+ SWN  I GY+ ++    A  L+  M R     PD +++ L+       
Sbjct: 109 KILNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGF 168

Query: 115 ----------------------------ITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
                                       I      GEL  AR+LFD      D   WN++
Sbjct: 169 SLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFD-ESCVRDLVSWNSI 227

Query: 147 VAGYAKIGNYNEAKKL------LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER 200
           + GY + G  +EA  L      L+ MP +  V+   ++S   +   + L  K  +++EE 
Sbjct: 228 INGYVRCGLADEAFDLYYKMGELNVMPDE--VTMIGVVSASAQLENLALGRKLHQSIEEM 285

Query: 201 ----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF 256
                V   N ++D Y++  ++++A   F+ + ++ VVSW TM+ GYA+ G +  A RLF
Sbjct: 286 GLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLF 345

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
           ++MP ++VV WNA+I  +VQ  + +EA  LF EM        +   D    +  L    +
Sbjct: 346 NEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQAS-----SVAPDKITVVNCLSACSQ 400

Query: 317 LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
           L             A+  G   +  +D+ N       T +V     ++  YA+CG + +A
Sbjct: 401 L------------GALDVGIWMHHYVDKHNL------TMNVALGTALVDMYAKCGNIKKA 442

Query: 377 INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
           I +F +M  ++ +TW  +I G A   Q   A+  F E                       
Sbjct: 443 IQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSE----------------------- 479

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ-IHHLAIKSGYVNDLFVGNS 495
                    M   G   D  T    LSAC H   +  GR   + +  K G    L   + 
Sbjct: 480 ---------MISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSC 530

Query: 496 LITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAINGN 536
           L+ +  + G ++ AE L +    +P D + W +L  G  I+GN
Sbjct: 531 LVDLLGRAGFLEEAEELIRSMPFEP-DAVVWGALFFGSRIHGN 572



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 170/375 (45%), Gaps = 25/375 (6%)

Query: 48  TYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM---- 103
            +N++I      G +  ARKLF++   R+LVSWNS+I GY+      EA +L+ KM    
Sbjct: 192 VHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELN 251

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAK 160
             PD  +   +++   +   L   R+L   +            NA++  Y K  N   AK
Sbjct: 252 VMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAK 311

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
            L + M  K +VSW +M+ GY K G +  A + F  M E+DVV WN ++ G+V+      
Sbjct: 312 ILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKE 371

Query: 221 AWKFFQKIPEQNV----VSWVTMLSGYARNGRM---LEARRLFDQMPIR-NVVAWNAMIA 272
           A   F ++   +V    ++ V  LS  ++ G +   +      D+  +  NV    A++ 
Sbjct: 372 ALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVD 431

Query: 273 AYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM--------PYK 324
            Y + G I++A ++F EMP RN ++WT +I G     +   A     +M           
Sbjct: 432 MYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEIT 491

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
            I   +A   G + ++  D   Q+  K G +  +  ++ ++    + G ++EA  L R M
Sbjct: 492 FIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSM 551

Query: 384 -VNKDIVTWNTMIAG 397
               D V W  +  G
Sbjct: 552 PFEPDAVVWGALFFG 566



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 148/320 (46%), Gaps = 20/320 (6%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K   +E A  +F  M++K  V++ +M+  YAK G +  A +LF +MP++++V WN++I G
Sbjct: 303 KCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGG 362

Query: 87  YLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT-- 140
           ++   + KEA  LF +M      PD  +    ++  ++ G L+    +   +     T  
Sbjct: 363 FVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMN 422

Query: 141 -ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE 199
            A   A+V  YAK GN  +A ++ + MP +N ++W +++ G   +G+ H A  +F  M  
Sbjct: 423 VALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMIS 482

Query: 200 ----RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRML 250
                D +++  +L        +D    +F ++  +  +S     +  ++    R G + 
Sbjct: 483 IGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLE 542

Query: 251 EARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTTMIDGYV 306
           EA  L   MP   + V W A+       G +   E AA   +E+   +   +  + + Y 
Sbjct: 543 EAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIYVLLANMYG 602

Query: 307 RIAKLDEARRLLDQMPYKNI 326
                ++AR++   M  + +
Sbjct: 603 DANMWEQARKVRKMMEERGV 622



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 31/213 (14%)

Query: 373 MDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
           +D    +     N ++ +WN  I GY +     +AV ++  M ++ + +           
Sbjct: 104 LDYCDKILNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAI----------- 152

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
                                D+ T       CA  +      +I    I+ G+ +DLFV
Sbjct: 153 --------------------PDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFV 192

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
            N++I +   CG +  A  LF ++   D++SWNS+I GY   G A EA  L+ +M    V
Sbjct: 193 HNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNV 252

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
            PD VT IGV+SA + +  +  G KL + + E+
Sbjct: 253 MPDEVTMIGVVSASAQLENLALGRKLHQSIEEM 285



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 96/229 (41%), Gaps = 41/229 (17%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYA--KCGRIQNAELLFKDADPV 519
           L AC  +A +   ++IH   I +G ++D F  + L+   A  +   +   + +  +A  +
Sbjct: 61  LEACTSMAKM---KEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAANL 117

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA-PDPVTFIGVLSACSHVGL------- 571
           +V SWN  I GY  + N   A+ L+  M+ +G A PD  T+  +   C+   L       
Sbjct: 118 NVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEI 177

Query: 572 --------VDGGLKLFECMT-------EVYAIEPLVEHYACMIDLLS---------RAGR 607
                    D  L +   +        E+ A   L +  +C+ DL+S         R G 
Sbjct: 178 LGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDE-SCVRDLVSWNSIINGYVRCGL 236

Query: 608 LDEAFEMVKGM---KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653
            DEAF++   M    + P+      ++ A    +N+ LGR   + + E+
Sbjct: 237 ADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEM 285


>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
 gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
          Length = 941

 Score =  331 bits (848), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 218/777 (28%), Positives = 376/777 (48%), Gaps = 73/777 (9%)

Query: 28  SGRVEEAIKIFSQMS----QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSM 83
           SG ++   +I S +       N +  NS+++ Y K   V  A K+F+ M  R++VSW +M
Sbjct: 71  SGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDVVSWTAM 130

Query: 84  IAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNK-- 137
           +A Y  N    +A E   +M     +P+  ++  ++    +   L+  R++   + N+  
Sbjct: 131 LAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIINEGL 190

Query: 138 -EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEA 196
             D    NA+V  Y   G++++ K +   M   +++ W +M++G ++NG+       F  
Sbjct: 191 EPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVFRK 250

Query: 197 MEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS----WVTMLSGYARNGR 248
           M+   V    V++  M++    LD +        +I E    S      +++S Y + G 
Sbjct: 251 MDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLATSLISLYGQCGI 310

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDG 304
           +  A+ L + M  R+VVAWNAM+ A  Q G   EA  L   M       N V++ ++++ 
Sbjct: 311 LDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEA 370

Query: 305 YVRIAKLDE-----ARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
              +  L +     AR LL  +  + +A   ++I+ Y +  + + A  +F+ +   D V 
Sbjct: 371 CANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVS 430

Query: 360 WNVMIKGYAQCGRMDEAINLFRQM------------------------------------ 383
           WN +I       +  +A+ LF  M                                    
Sbjct: 431 WNAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAA 490

Query: 384 ----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD- 438
                       N+++  YA+   + DA K F+ + + +  V+W+ +++ + Q++     
Sbjct: 491 AGGFGGNSTAVGNSVVNMYARCGSLLDAKKAFDSL-EEKGLVAWSIILAAYAQSKDGPGR 549

Query: 439 -ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV-NDLFVGNSL 496
            A K F  M  EG K    T   AL ACA +A L+ GR +H  A  SG+V   L +GN++
Sbjct: 550 RAFKFFQEMEAEGIKPGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTI 609

Query: 497 ITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
           I MY KCG   +A+L+F       +ISWNSLI  YA NG+A EA+   +EM+++G  PD 
Sbjct: 610 INMYGKCGSPSDAKLVFDQMPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDS 669

Query: 557 VTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV- 615
            T + +L   SH GL++ G++ F    + + +EP      C++DLL+R G LD A E++ 
Sbjct: 670 GTSVSILYGLSHAGLLERGVEHFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEELIL 729

Query: 616 KGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWD 675
                + +   W TLL AC+ + + + G    E++ ELEPQ +  + +L+N++A  GRW 
Sbjct: 730 ASPACQADTIAWMTLLAACKSYGDPQRGIRCAERVFELEPQHSGSFVVLANLYASVGRWS 789

Query: 676 EVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           +  ++R  ME    +K+PGCSWIE+   +H F+SG+ K  +  EIC  L+ L  ++R
Sbjct: 790 DASRIRKMMERMSVKKEPGCSWIELSGSVHEFISGESKHPKIREICEDLEKLTLRMR 846



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 167/586 (28%), Positives = 276/586 (47%), Gaps = 67/586 (11%)

Query: 56  YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSW 111
           Y K  RV DA  +F+ +  +N+ SW  M+A Y  N   +EA ELF +M     RPD   +
Sbjct: 2   YGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVVF 61

Query: 112 ALMITCYTRKGELEKARELFDLLPNKEDTA---CWNAMVAGYAKIGNYNEAKKLLDAMPS 168
            + +      GEL+  R++   +     T+     N++V  Y K  +   A+K+ D M  
Sbjct: 62  VIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLL 121

Query: 169 KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKF 224
           +++VSW +ML+ Y +NG    A +    M+   V    V++  ++D   +L  LD   K 
Sbjct: 122 RDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKI 181

Query: 225 FQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQI 280
             +I     E + +    ++  Y   G   + + +F +M   +V+ W  MIA   Q GQ 
Sbjct: 182 HHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQY 241

Query: 281 EEAARLF----IEMPERNPVSWTTMIDGYVRIAKLDEAR----RLLDQMPYKNIAAQTAM 332
           EE   +F    +E  + N V++ +M++    +  + E      R+L+     +    T++
Sbjct: 242 EEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLATSL 301

Query: 333 ISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM--------- 383
           IS Y Q   +D A  + + +   DVV WN M+   AQ G   EAI+L R+M         
Sbjct: 302 ISLYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANK 361

Query: 384 -------------------------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFE 412
                                          + +++   N++I  Y +  Q + A+ +FE
Sbjct: 362 VTYLSVLEACANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFE 421

Query: 413 EMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQ 472
            M  R++ VSWNA+I+  + N    DAL++F  M  EG +++  TL   L AC  L  L+
Sbjct: 422 AM-PRKDDVSWNAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLK 480

Query: 473 LGRQIH-HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGY 531
           L RQIH   A      N   VGNS++ MYA+CG + +A+  F   +   +++W+ ++A Y
Sbjct: 481 LARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLLDAKKAFDSLEEKGLVAWSIILAAY 540

Query: 532 A--INGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
           A   +G    A K F+EM  EG+ P  VTF+  L AC+ +  ++ G
Sbjct: 541 AQSKDGPGRRAFKFFQEMEAEGIKPGEVTFVSALDACAAMATLEHG 586



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 129/253 (50%), Gaps = 3/253 (1%)

Query: 398 YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHST 457
           Y +  ++ DA+ +F+ +  + N  SW  +++ + QN  + +AL++F  M  EG + D   
Sbjct: 2   YGKCARVTDALMVFDGISAK-NVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVV 60

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD 517
              AL ACA    L  GRQIH   + SG  +++ + NSL+ MY KC  +  AE +F    
Sbjct: 61  FVIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGML 120

Query: 518 PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLK 577
             DV+SW +++A YA NG  ++A++    M  EGV P+ VTF+ ++  C+ + L+D G K
Sbjct: 121 LRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRK 180

Query: 578 LFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMH 637
           +   +     +EP       ++ +    G  D+   +   M  + +  +W T++  C  +
Sbjct: 181 IHHRIIN-EGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMG-QSSVLLWTTMIAGCSQN 238

Query: 638 QNIKLGRIAVEKL 650
              + G +   K+
Sbjct: 239 GQYEEGLLVFRKM 251



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 97/217 (44%), Gaps = 36/217 (16%)

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           MY KC R+ +A ++F      +V SW  ++A Y+ NG+  EA++LF  M  EG  PD V 
Sbjct: 1   MYGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVV 60

Query: 559 FIGVLSACSHVGLVDGGLKLFE----------------------------CMTEVYAIEP 590
           F+  L AC+  G +D G ++                              C  +V+    
Sbjct: 61  FVIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGML 120

Query: 591 L--VEHYACMIDLLSRAGRLDEAFEMVKGMK---IKPNAGIWGTLLGACRMHQNIKLGRI 645
           L  V  +  M+ + ++ G   +A E +  M    +KPN   + T++  C   + + LGR 
Sbjct: 121 LRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRK 180

Query: 646 AVEKL--SELEPQKTSCYALLSNMHAEAGRWDEVEKV 680
              ++    LEP      AL+ +M+   G +D+++ V
Sbjct: 181 IHHRIINEGLEPDGILGNALV-HMYGSCGSFDDMKSV 216


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  331 bits (848), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 198/652 (30%), Positives = 339/652 (51%), Gaps = 42/652 (6%)

Query: 114 MITCYTR----KGELEKARELFDLLP-NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS 168
           +++ Y R    +G   +AR LFD +P  + +   WN++++ YAK G   +A+ +   MP 
Sbjct: 66  LLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTWNSLLSMYAKSGRLADARVVFAQMPE 125

Query: 169 KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI 228
           ++ VSW  M+ G  + G    A K F  M    +     ML   +       A    +K+
Sbjct: 126 RDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKV 185

Query: 229 -------------PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
                        P  N V ++     Y + G    AR +F++M +R+  +WNAM++ Y 
Sbjct: 186 HSFVIKLGLSSCVPVANSVLYM-----YGKCGDAETARAVFERMKVRSESSWNAMVSLYT 240

Query: 276 QRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ-----T 330
            +G+++ A  +F  M ER+ VSW  +I GY +    D A +   +M   +         T
Sbjct: 241 HQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVT 300

Query: 331 AMISGYVQNKRMDEANQIFDKI----GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
           +++S     + +    Q+   I      +     N +I  YA+ G ++ A  +  + V  
Sbjct: 301 SVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVA 360

Query: 387 D--IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
           D  ++++  ++ GY ++     A ++F+ M  R + ++W A+I G+ QN  + +A+++F 
Sbjct: 361 DLNVISFTALLEGYVKLGDTKQAREVFDVMNNR-DVIAWTAMIVGYEQNGQNDEAMELFR 419

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG 504
            M + G + +  TLA  LSACA LA L  G+QIH  AI+S     + V N++IT+YA+ G
Sbjct: 420 SMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSG 479

Query: 505 RIQNAELLFKDADPV----DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
            +  A  +F   D +    + ++W S+I   A +G   +AI LFEEM+  GV PD VT+I
Sbjct: 480 SVPLARRVF---DQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYI 536

Query: 561 GVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKI 620
           GV SAC+H G +D G + +E M   + I P + HYACM+DLL+RAG L EA E ++ M +
Sbjct: 537 GVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPV 596

Query: 621 KPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKV 680
            P+  +WG+LL ACR+ +N  L  +A EKL  ++P  +  Y+ L+N+++  GRW++  ++
Sbjct: 597 APDTVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNSGAYSALANVYSACGRWNDAARI 656

Query: 681 RVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
               +    +K+ G SW  V++++H F + D    +   IC     +  +I+
Sbjct: 657 WKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLHPQRDAICKKAAEMWEEIK 708



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 163/581 (28%), Positives = 286/581 (49%), Gaps = 54/581 (9%)

Query: 29  GRVEEAIKIFSQM--SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           G   EA ++F  +  +++N  T+NS++S YAK+GR+ DAR +F QMP+R+ VSW  M+ G
Sbjct: 78  GCFHEARRLFDDIPYARRNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVG 137

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKA----RELFDLLPNKEDTAC 142
                +  +A + F  M    L     M+T         +A    R++   +     ++C
Sbjct: 138 LNRAGRFWDAVKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSC 197

Query: 143 ---WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE 199
               N+++  Y K G+   A+ + + M  ++  SWN+M+S YT  G M LA   FE MEE
Sbjct: 198 VPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEE 257

Query: 200 RDVVSWNLMLDGYVE--LDDLDSAWKFFQKI-------PEQNVVSWVTMLSGYARNGRML 250
           R +VSWN ++ GY +  LDD+  A KFF ++       P++  V+  ++LS  A N RML
Sbjct: 258 RSIVSWNAIIAGYNQNGLDDM--ALKFFSRMLTASSMEPDEFTVT--SVLSACA-NLRML 312

Query: 251 EARRLFDQMPIRNVVAW-----NAMIAAYVQRGQIEEAARLFIE--MPERNPVSWTTMID 303
           +  +      +R  + +     NA+I+ Y + G +E A R+  +  + + N +S+T +++
Sbjct: 313 KMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLE 372

Query: 304 GYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI-------GTHD 356
           GYV++    +AR + D M  +++ A TAMI GY QN + DEA ++F  +        +H 
Sbjct: 373 GYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHT 432

Query: 357 V-----VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIF 411
           +      C ++   GY +           R +  + +   N +I  YA+   +  A ++F
Sbjct: 433 LAAVLSACASLAYLGYGK----QIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVF 488

Query: 412 EEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAAL 471
           +++  R+ TV+W ++I    Q+     A+ +F  M + G K D  T     SAC H   +
Sbjct: 489 DQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFI 548

Query: 472 QLGRQIHHLAI-KSGYVNDLFVGNSLITMYAKCGRIQNA-ELLFKDADPVDVISWNSLIA 529
             G++ +   + + G V ++     ++ + A+ G +  A E + +     D + W SL+A
Sbjct: 549 DKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLA 608

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDP----VTFIGVLSAC 566
              +  NA  A    E+++   + PD          V SAC
Sbjct: 609 ACRVRKNADLAELAAEKLL--SIDPDNSGAYSALANVYSAC 647



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 124/462 (26%), Positives = 214/462 (46%), Gaps = 64/462 (13%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F  N  ++   KSGR+ +A  +F+QM +++ V++  M+    + GR  DA K F  M   
Sbjct: 98  FTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGE 157

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDK----MFRPDLFSWA----LMITCYTRKGELEKA 127
            L     M+   L +    EAR +  K    + +  L S       ++  Y + G+ E A
Sbjct: 158 GLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETA 217

Query: 128 RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
           R +F+ +  + +++ WNAMV+ Y   G  + A  + + M  ++IVSWN++++GY +NG  
Sbjct: 218 RAVFERMKVRSESS-WNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLD 276

Query: 188 HLASKFFEAM--------EERDVVS--------------------------------WNL 207
            +A KFF  M        +E  V S                                 N 
Sbjct: 277 DMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNA 336

Query: 208 MLDGYVELDDLDSAWKFFQK--IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
           ++  Y +   +++A +   K  + + NV+S+  +L GY + G   +AR +FD M  R+V+
Sbjct: 337 LISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVI 396

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEAR----RL 317
           AW AMI  Y Q GQ +EA  LF  M    PE N  +   ++     +A L   +    R 
Sbjct: 397 AWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRA 456

Query: 318 LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG-THDVVCWNVMIKGYAQCGRMDEA 376
           +  +  ++++   A+I+ Y ++  +  A ++FD+I    + V W  MI   AQ G  ++A
Sbjct: 457 IRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQA 516

Query: 377 INLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           I LF +M    V  D VT+  + +       +D   + +E+M
Sbjct: 517 IVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQM 558



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 107/425 (25%), Positives = 205/425 (48%), Gaps = 32/425 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +   GK G  E A  +F +M  ++  ++N+M+S Y   GR++ A  +FE M +R++V
Sbjct: 202 NSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIV 261

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMF-----RPDLFSWALMITCYTRKGELEKARELFDL 133
           SWN++IAGY  N     A + F +M       PD F+   +++       L+  +++   
Sbjct: 262 SWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSY 321

Query: 134 LPNK---EDTACWNAMVAGYAKIGNYNEAKKLLD--AMPSKNIVSWNSMLSGYTKNGEMH 188
           +        +   NA+++ YAK G+   A++++D   +   N++S+ ++L GY K G+  
Sbjct: 322 ILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTK 381

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLS--- 241
            A + F+ M  RDV++W  M+ GY +    D A + F+ +    PE N  +   +LS   
Sbjct: 382 QAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACA 441

Query: 242 --GYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN-PVSW 298
              Y   G+ +  R +   +  ++V   NA+I  Y + G +  A R+F ++  R   V+W
Sbjct: 442 SLAYLGYGKQIHCRAI-RSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTW 500

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNI----AAQTAMISGYVQNKRMDEANQIFDK-IG 353
           T+MI    +    ++A  L ++M    +         + S       +D+  + +++ + 
Sbjct: 501 TSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLN 560

Query: 354 THDVVC----WNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAGYAQIRQMDDAV 408
            H +V     +  M+   A+ G + EA    ++M V  D V W +++A   ++R+  D  
Sbjct: 561 EHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAA-CRVRKNADLA 619

Query: 409 KIFEE 413
           ++  E
Sbjct: 620 ELAAE 624



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 37/131 (28%)

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITM---------------------------------- 499
           GR IH  A+K+G +   ++ N+L++                                   
Sbjct: 44  GRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTWNSL 103

Query: 500 ---YAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
              YAK GR+ +A ++F      D +SW  ++ G    G   +A+K F +MV EG+AP  
Sbjct: 104 LSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQ 163

Query: 557 VTFIGVLSACS 567
                VLS+C+
Sbjct: 164 FMLTNVLSSCA 174


>gi|356518834|ref|XP_003528082.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08490-like [Glycine max]
          Length = 875

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 216/712 (30%), Positives = 365/712 (51%), Gaps = 45/712 (6%)

Query: 44  KNTVTYNSMISAYAKNGRV-NDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           ++T+  N+++S YAK G V +DA  +F+ +  +++VSWN+MIAG   N  V++A  LF  
Sbjct: 179 QDTLGGNALVSMYAKCGLVSHDAYAVFDNIAYKDVVSWNAMIAGLAENRLVEDAFLLFSS 238

Query: 103 MFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKL 162
           M +             TR      A    ++LP     A ++  VA Y   G    +  L
Sbjct: 239 MVKGP-----------TRPNYATVA----NILPV---CASFDKSVAYYC--GRQIHSYVL 278

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAW 222
                S ++   N+++S Y K G+M  A   F  M+ RD+V+WN  + GY    +   A 
Sbjct: 279 QWPELSADVSVCNALISLYLKVGQMREAEALFWTMDARDLVTWNAFIAGYTSNGEWLKAL 338

Query: 223 KFFQKIPE-----QNVVSWVTMLSGYA-----RNGRMLEARRLFDQMPIRNVVAWNAMIA 272
             F  +        + V+ V++L   A     + G+ + A          +    NA+++
Sbjct: 339 HLFGNLASLETLLPDSVTMVSILPACAQLKNLKVGKQIHAYIFRHPFLFYDTAVGNALVS 398

Query: 273 AYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAM 332
            Y + G  EEA   F  +  ++ +SW ++ D +           LL  M    I   +  
Sbjct: 399 FYAKCGYTEEAYHTFSMISMKDLISWNSIFDAFGEKRHHSRFLSLLHCMLKLRIRPDSVT 458

Query: 333 ISGYVQN----KRMDEANQIFD-KIGTHDVV------CWNVMIKGYAQCGRMDEAINLFR 381
           I   ++      R+++  +I    I T  ++        N ++  Y++CG M+ A  +F+
Sbjct: 459 ILAIIRLCASLLRVEKVKEIHSYSIRTGSLLSNTAPTVGNAILDAYSKCGNMEYANKMFQ 518

Query: 382 QMVNK-DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
            +  K ++VT N++I+GY  +    DA  IF  M +  +  +WN ++  + +N+    AL
Sbjct: 519 NLSEKRNLVTCNSLISGYVGLGSHHDANMIFSGMSET-DLTTWNLMVRVYAENDCPEQAL 577

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500
            +   +   G K D  T+   L  C  +A++ L  Q     I+S +  DL +  +L+  Y
Sbjct: 578 GLCHELQARGMKPDTVTIMSLLPVCTQMASVHLLSQCQGYIIRSCF-KDLHLEAALLDAY 636

Query: 501 AKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
           AKCG I  A  +F+ +   D++ + ++I GYA++G + EA+ +F  M+  G+ PD + F 
Sbjct: 637 AKCGIIGRAYKIFQLSAEKDLVMFTAMIGGYAMHGMSEEALWIFSHMLKLGIQPDHIIFT 696

Query: 561 GVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKI 620
            +LSACSH G VD GLK+F  + +++ ++P VE YAC++DLL+R GR+ EA+ +V  + I
Sbjct: 697 SILSACSHAGRVDEGLKIFYSIEKLHGMKPTVEQYACVVDLLARGGRISEAYSLVTSLPI 756

Query: 621 KPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKV 680
           + NA +WGTLLGAC+ H  ++LGRI   +L ++E      Y +LSN++A   RWD V +V
Sbjct: 757 EANANLWGTLLGACKTHHEVELGRIVANQLFKIEANDIGNYIVLSNLYAADARWDGVMEV 816

Query: 681 RVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           R  M     +K  GCSWIEV+   + F++GD    + + I +TL+TL  Q++
Sbjct: 817 RRMMRNKDLKKPAGCSWIEVERTNNIFVAGDCSHPQRSIIYSTLQTLDRQVK 868



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 145/681 (21%), Positives = 263/681 (38%), Gaps = 173/681 (25%)

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY------------------- 212
           V+   +L+ Y K G +    K F+ +   D V WN++L G+                   
Sbjct: 79  VTNKGLLNMYAKCGMLVECLKLFDQLSHCDPVVWNIVLSGFSGSNKCDADVMRVFRMMHS 138

Query: 213 ------------------VELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRM- 249
                               L DLD+       +     +Q+ +    ++S YA+ G + 
Sbjct: 139 SREALPNSVTVATVLPVCARLGDLDAGKCVHGYVIKSGFDQDTLGGNALVSMYAKCGLVS 198

Query: 250 LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM---PERNPVSWTTMIDGYV 306
            +A  +FD +  ++VV+WNAMIA   +   +E+A  LF  M   P R   ++ T+ +   
Sbjct: 199 HDAYAVFDNIAYKDVVSWNAMIAGLAENRLVEDAFLLFSSMVKGPTRP--NYATVANILP 256

Query: 307 RIAKLDEA---------RRLLDQMP--YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
             A  D++            + Q P    +++   A+IS Y++  +M EA  +F  +   
Sbjct: 257 VCASFDKSVAYYCGRQIHSYVLQWPELSADVSVCNALISLYLKVGQMREAEALFWTMDAR 316

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMVN------------------------------ 385
           D+V WN  I GY   G   +A++LF  + +                              
Sbjct: 317 DLVTWNAFIAGYTSNGEWLKALHLFGNLASLETLLPDSVTMVSILPACAQLKNLKVGKQI 376

Query: 386 -----------KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
                       D    N +++ YA+    ++A   F  M   ++ +SWN++   F +  
Sbjct: 377 HAYIFRHPFLFYDTAVGNALVSFYAKCGYTEEAYHTF-SMISMKDLISWNSIFDAFGEKR 435

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG--------- 485
            H   L +   M +   + D  T+   +  CA L  ++  ++IH  +I++G         
Sbjct: 436 HHSRFLSLLHCMLKLRIRPDSVTILAIIRLCASLLRVEKVKEIHSYSIRTGSLLSNTAPT 495

Query: 486 ----------------YVNDLF----------VGNSLITMYAKCGRIQNAELLFKDADPV 519
                           Y N +F            NSLI+ Y   G   +A ++F      
Sbjct: 496 VGNAILDAYSKCGNMEYANKMFQNLSEKRNLVTCNSLISGYVGLGSHHDANMIFSGMSET 555

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVD-----G 574
           D+ +WN ++  YA N    +A+ L  E+   G+ PD VT + +L  C+ +  V       
Sbjct: 556 DLTTWNLMVRVYAENDCPEQALGLCHELQARGMKPDTVTIMSLLPVCTQMASVHLLSQCQ 615

Query: 575 GLKLFECMTEVYAIEPLVEHYA------------------------CMIDLLSRAGRLDE 610
           G  +  C  +++    L++ YA                         MI   +  G  +E
Sbjct: 616 GYIIRSCFKDLHLEAALLDAYAKCGIIGRAYKIFQLSAEKDLVMFTAMIGGYAMHGMSEE 675

Query: 611 A---FEMVKGMKIKPNAGIWGTLLGAC----RMHQNIKLGRIAVEKLSELEPQKTSCYAL 663
           A   F  +  + I+P+  I+ ++L AC    R+ + +K+   ++EKL  ++P     YA 
Sbjct: 676 ALWIFSHMLKLGIQPDHIIFTSILSACSHAGRVDEGLKI-FYSIEKLHGMKPTVEQ-YAC 733

Query: 664 LSNMHAEAGRWDEVEKVRVSM 684
           + ++ A  GR  E   +  S+
Sbjct: 734 VVDLLARGGRISEAYSLVTSL 754



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 117/525 (22%), Positives = 214/525 (40%), Gaps = 99/525 (18%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ---- 74
           N  I+   K G++ EA  +F  M  ++ VT+N+ I+ Y  NG    A  LF  +      
Sbjct: 291 NALISLYLKVGQMREAEALFWTMDARDLVTWNAFIAGYTSNGEWLKALHLFGNLASLETL 350

Query: 75  -RNLVSWNSMIAGYLHNDKVKEARELFDKMFR-PDLFSWALMITCYTRKGELEKARELFD 132
             + V+  S++        +K  +++   +FR P LF                       
Sbjct: 351 LPDSVTMVSILPACAQLKNLKVGKQIHAYIFRHPFLF----------------------- 387

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
                 DTA  NA+V+ YAK G   EA      +  K+++SWNS+   +   GE    S+
Sbjct: 388 -----YDTAVGNALVSFYAKCGYTEEAYHTFSMISMKDLISWNSIFDAF---GEKRHHSR 439

Query: 193 FFEAM-----------------------------EERDVVSW----------------NL 207
           F   +                             + +++ S+                N 
Sbjct: 440 FLSLLHCMLKLRIRPDSVTILAIIRLCASLLRVEKVKEIHSYSIRTGSLLSNTAPTVGNA 499

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQ-NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA 266
           +LD Y +  +++ A K FQ + E+ N+V+  +++SGY   G   +A  +F  M   ++  
Sbjct: 500 ILDAYSKCGNMEYANKMFQNLSEKRNLVTCNSLISGYVGLGSHHDANMIFSGMSETDLTT 559

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP---- 322
           WN M+  Y +    E+A  L  E+  R     T  I   + +     +  LL Q      
Sbjct: 560 WNLMVRVYAENDCPEQALGLCHELQARGMKPDTVTIMSLLPVCTQMASVHLLSQCQGYII 619

Query: 323 ---YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
              +K++  + A++  Y +   +  A +IF      D+V +  MI GYA  G  +EA+ +
Sbjct: 620 RSCFKDLHLEAALLDAYAKCGIIGRAYKIFQLSAEKDLVMFTAMIGGYAMHGMSEEALWI 679

Query: 380 FRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIF---EEMGKRRNTVSWNALISGFLQ 432
           F  M    +  D + + ++++  +   ++D+ +KIF   E++   + TV   A +   L 
Sbjct: 680 FSHMLKLGIQPDHIIFTSILSACSHAGRVDEGLKIFYSIEKLHGMKPTVEQYACVVDLLA 739

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI 477
               +   + + L+T    +A+ +     L AC     ++LGR +
Sbjct: 740 RGGRIS--EAYSLVTSLPIEANANLWGTLLGACKTHHEVELGRIV 782



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 4/162 (2%)

Query: 418 RNTVSWNALISGFLQNEFHLDALKIF--VLMTQEGKKADHSTLACALSACAHLAALQLGR 475
           R+  +W ++I        H +AL +F   L   E  K DH+ LA  L +C+ L A  LGR
Sbjct: 4   RDFKTWGSVIWSLCLEAKHSEALSLFHHCLKGHEAFKPDHTVLAAILKSCSALLAPNLGR 63

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYA-IN 534
            +H   +K G+ +       L+ MYAKCG +     LF      D + WN +++G++  N
Sbjct: 64  TLHGYVVKQGHGSCHVTNKGLLNMYAKCGMLVECLKLFDQLSHCDPVVWNIVLSGFSGSN 123

Query: 535 GNATEAIKLFEEMVMEGVA-PDPVTFIGVLSACSHVGLVDGG 575
               + +++F  M     A P+ VT   VL  C+ +G +D G
Sbjct: 124 KCDADVMRVFRMMHSSREALPNSVTVATVLPVCARLGDLDAG 165


>gi|302820037|ref|XP_002991687.1| hypothetical protein SELMODRAFT_133908 [Selaginella moellendorffii]
 gi|300140536|gb|EFJ07258.1| hypothetical protein SELMODRAFT_133908 [Selaginella moellendorffii]
          Length = 589

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 190/575 (33%), Positives = 300/575 (52%), Gaps = 6/575 (1%)

Query: 100 FDKMFRPDLFSWA-LMITCYTRKGELEKARELFDLLPNKED--TACWNAMVAGYAKIGNY 156
           F   F  +  ++A L+  C   K   E  R    ++ +++D  T   N ++  Y+  G+ 
Sbjct: 14  FGDAFHIERAAYANLLRQCIACKSLREGKRLHAHIVASRQDHDTLLGNLLIQMYSSCGSM 73

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELD 216
           +EA      +   N  SWN +L  Y +NG++ LA + F+ M +  +VS+N +L  Y  + 
Sbjct: 74  DEAHLAFSQIQRSNTFSWNILLGAYVRNGDIVLAREVFDRMPQWGLVSFNSILTAYSRIG 133

Query: 217 DLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR-LFDQMPIRNVVAWNAMIAAYV 275
             + +   F  +PE + +SW  M++ +A +G    A+  LF++M  RN+V+WN++I A+ 
Sbjct: 134 SPEQSSVIFHWMPELDEISWNAMIAAFAHSGHSFAAKNNLFERMGERNIVSWNSLITAHA 193

Query: 276 QRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG 335
           +  + E A  +  +MP+ + VS T  + GY     +  A  L   MP +N+ +   ++S 
Sbjct: 194 KNAEPELARAVLGKMPQHDIVSSTAAMLGYAYTGDMSSAIALFLAMPQRNLISWNTLVSA 253

Query: 336 YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMI 395
           Y     ++ A   F ++    +  W  +I GY Q GR+  A+ +FR +  K+    N M+
Sbjct: 254 YGHTASVEGAEDSFARMPKWSISSWIGLIIGYCQGGRIQSALAVFRDLPAKNTSACNAML 313

Query: 396 AGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADH 455
            G      MD+A+ +F  +   R+ +SW+A+++GFLQ+     A+K F+LM  +G K D 
Sbjct: 314 TGLCLNAVMDEALALFLAI-PARDVISWSAIVTGFLQSGDARSAMKYFLLMDLDGIKPDE 372

Query: 456 STLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF-K 514
                A+ +C   + L  GR +H     +GY +   V NSL+ MY KCG +Q A  LF +
Sbjct: 373 MAFLVAIDSCGAASDLARGRFLHAEIDAAGYDSSSTVANSLVGMYGKCGNLQEARRLFDR 432

Query: 515 DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574
                    WN++I+ Y+  G   EA+ L   M  +G  P  VT+I  LSACSH+GLV+ 
Sbjct: 433 GGARRSSALWNTMISCYSQAGFVREALDLLHAMEQDGTIPTAVTYIAALSACSHMGLVEL 492

Query: 575 GLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGAC 634
           G   F  M+E Y I P  EHYACMIDLLSRAG L+ A E V+ M + P+   W  LLGAC
Sbjct: 493 GTHHFTAMSESYGIAPAAEHYACMIDLLSRAGILESAEEFVERMPVAPDGIAWTALLGAC 552

Query: 635 RMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHA 669
           + H  +       E+  +   Q  S Y LLSN+ A
Sbjct: 553 KSHGGVDAAERVAERALQKGGQWASSYILLSNLQA 587



 Score =  234 bits (598), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 149/531 (28%), Positives = 267/531 (50%), Gaps = 20/531 (3%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKE 95
            I +     +T+  N +I  Y+  G +++A   F Q+ + N  SWN ++  Y+ N  +  
Sbjct: 47  HIVASRQDHDTLLGNLLIQMYSSCGSMDEAHLAFSQIQRSNTFSWNILLGAYVRNGDIVL 106

Query: 96  ARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGN 155
           ARE+FD+M +  L S+  ++T Y+R G  E++  +F  +P  ++ + WNAM+A +A  G+
Sbjct: 107 AREVFDRMPQWGLVSFNSILTAYSRIGSPEQSSVIFHWMPELDEIS-WNAMIAAFAHSGH 165

Query: 156 YNEAK-KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE 214
              AK  L + M  +NIVSWNS+++ + KN E  LA      M + D+VS    + GY  
Sbjct: 166 SFAAKNNLFERMGERNIVSWNSLITAHAKNAEPELARAVLGKMPQHDIVSSTAAMLGYAY 225

Query: 215 LDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
             D+ SA   F  +P++N++SW T++S Y     +  A   F +MP  ++ +W  +I  Y
Sbjct: 226 TGDMSSAIALFLAMPQRNLISWNTLVSAYGHTASVEGAEDSFARMPKWSISSWIGLIIGY 285

Query: 275 VQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMIS 334
            Q G+I+ A  +F ++P +N  +   M+ G    A +DEA  L   +P +++ + +A+++
Sbjct: 286 CQGGRIQSALAVFRDLPAKNTSACNAMLTGLCLNAVMDEALALFLAIPARDVISWSAIVT 345

Query: 335 GYVQNKRMDEANQIF-----DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VN 385
           G++Q+     A + F     D I   D + + V I        +     L  ++     +
Sbjct: 346 GFLQSGDARSAMKYFLLMDLDGIKP-DEMAFLVAIDSCGAASDLARGRFLHAEIDAAGYD 404

Query: 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVL 445
                 N+++  Y +   + +A ++F+  G RR++  WN +IS + Q  F  +AL +   
Sbjct: 405 SSSTVANSLVGMYGKCGNLQEARRLFDRGGARRSSALWNTMISCYSQAGFVREALDLLHA 464

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS---GYVNDLFVGNSLITMYAK 502
           M Q+G      T   ALSAC+H+  ++LG   HH    S   G          +I + ++
Sbjct: 465 MEQDGTIPTAVTYIAALSACSHMGLVELG--THHFTAMSESYGIAPAAEHYACMIDLLSR 522

Query: 503 CGRIQNAELLFKDADPV--DVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
            G +++AE  F +  PV  D I+W +L+     +G    A ++ E  + +G
Sbjct: 523 AGILESAE-EFVERMPVAPDGIAWTALLGACKSHGGVDAAERVAERALQKG 572



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 150/291 (51%), Gaps = 10/291 (3%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           + + N  IT   K+   E A  +  +M Q + V+  + +  YA  G ++ A  LF  MPQ
Sbjct: 182 IVSWNSLITAHAKNAEPELARAVLGKMPQHDIVSSTAAMLGYAYTGDMSSAIALFLAMPQ 241

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RNL+SWN++++ Y H   V+ A + F +M +  + SW  +I  Y + G ++ A  +F  L
Sbjct: 242 RNLISWNTLVSAYGHTASVEGAEDSFARMPKWSISSWIGLIIGYCQGGRIQSALAVFRDL 301

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           P K  +AC NAM+ G       +EA  L  A+P+++++SW+++++G+ ++G+   A K+F
Sbjct: 302 PAKNTSAC-NAMLTGLCLNAVMDEALALFLAIPARDVISWSAIVTGFLQSGDARSAMKYF 360

Query: 195 EAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT----MLSGYARN 246
             M+    + D +++ + +D      DL        +I      S  T    ++  Y + 
Sbjct: 361 LLMDLDGIKPDEMAFLVAIDSCGAASDLARGRFLHAEIDAAGYDSSSTVANSLVGMYGKC 420

Query: 247 GRMLEARRLFDQMPIRNVVA-WNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
           G + EARRLFD+   R   A WN MI+ Y Q G + EA  L   M +   +
Sbjct: 421 GNLQEARRLFDRGGARRSSALWNTMISCYSQAGFVREALDLLHAMEQDGTI 471


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 189/519 (36%), Positives = 285/519 (54%), Gaps = 39/519 (7%)

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVA----WNAMIAAYVQRGQIEEAAR----LFI 288
           V   + +     +  A R  D M    V A    ++ +I     RG ++E  R    +F 
Sbjct: 24  VNEFANFCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFC 83

Query: 289 EMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQI 348
           +  E       T+++ YV+   L+EA  L D+MP +N+ + T MIS Y  NK  D+A   
Sbjct: 84  KGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAY-SNKLNDKA--- 139

Query: 349 FDKIGTHDVVCWNVMIK--------GYAQCGRMDEAINLFRQM--------VNKDIVTWN 392
                   + C  +M +         Y+   R  + +   RQ+        +  D+   +
Sbjct: 140 --------LKCLILMFREGVRPNMFTYSSVLRACDGLPNLRQLHCGIIKTGLESDVFVRS 191

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
            +I  Y++   +D+A+ +F+EM   R+ V WN++I GF QN    +AL +F  M + G  
Sbjct: 192 ALIDVYSKWSDLDNALGVFDEM-PTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFL 250

Query: 453 ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512
           AD +TL   L AC  LA L+LGRQ+H   +K  +  DL + N+LI MY KCG +++A   
Sbjct: 251 ADQATLTSVLRACTGLALLELGRQVHVHVLK--FDQDLILNNALIDMYCKCGSLEDANSA 308

Query: 513 FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
           F      DVISW++++AG A NG + +A++LFE M   G  P+ +T +GVL ACSH GLV
Sbjct: 309 FSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLV 368

Query: 573 DGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLG 632
           + G   F  M +++ ++P  EHY C+IDLL RAGRLDEA +++  M+ +P++  W TLLG
Sbjct: 369 EKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLG 428

Query: 633 ACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQ 692
           ACR+H+N+ L   A +K+ ELEP+    Y LLSN++A   RW++V +VR +M   G +K 
Sbjct: 429 ACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKT 488

Query: 693 PGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           PGCSWIEV  QIH F+ GD    +  EI   L  L  ++
Sbjct: 489 PGCSWIEVDKQIHVFILGDTSHPKIEEIVQRLNDLIERV 527



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 162/348 (46%), Gaps = 53/348 (15%)

Query: 23  TQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNS 82
            Q GK  RV E   IF +  +      N++++ Y K   + +A  LF++MP+RN+VSW +
Sbjct: 71  VQEGK--RVHE--HIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTT 126

Query: 83  MIAGY---LHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKED 139
           MI+ Y   L++  +K    +F +  RP++F+++ ++        L +          + D
Sbjct: 127 MISAYSNKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNLRQLHCGIIKTGLESD 186

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME- 198
               +A++  Y+K  + + A  + D MP++++V WNS++ G+ +N + + A   F+ M+ 
Sbjct: 187 VFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKR 246

Query: 199 ------------------------------------ERDVVSWNLMLDGYVELDDLDSAW 222
                                               ++D++  N ++D Y +   L+ A 
Sbjct: 247 AGFLADQATLTSVLRACTGLALLELGRQVHVHVLKFDQDLILNNALIDMYCKCGSLEDAN 306

Query: 223 KFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRG 278
             F ++ E++V+SW TM++G A+NG   +A  LF+ M       N +    ++ A    G
Sbjct: 307 SAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAG 366

Query: 279 QIEEAARLFIEMPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQM 321
            +E+    F  M +   V      +  +ID   R  +LDEA +L+ +M
Sbjct: 367 LVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEM 414



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 139/302 (46%), Gaps = 18/302 (5%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           + +    +++I  Y+K   +++A  +F++MP R+LV WNS+I G+  N    EA  LF +
Sbjct: 184 ESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKR 243

Query: 103 MFRPDLFSWALMITCYTRK----GELEKAREL-FDLLPNKEDTACWNAMVAGYAKIGNYN 157
           M R    +    +T   R       LE  R++   +L   +D    NA++  Y K G+  
Sbjct: 244 MKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLKFDQDLILNNALIDMYCKCGSLE 303

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYV 213
           +A      M  K+++SW++M++G  +NG    A + FE+M+E     + ++   +L    
Sbjct: 304 DANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACS 363

Query: 214 ELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPIR-NVVAW 267
               ++  W +F+ + +   V      +  ++    R GR+ EA +L  +M    + V W
Sbjct: 364 HAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTW 423

Query: 268 NAMIAAYVQRGQIE---EAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
             ++ A      ++    AA+  IE+   +  ++  + + Y    + ++   +   M  +
Sbjct: 424 RTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNR 483

Query: 325 NI 326
            I
Sbjct: 484 GI 485



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 13/162 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR--- 75
           N  I    K G +E+A   FS+M +K+ +++++M++  A+NG    A +LFE M +    
Sbjct: 290 NALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSR 349

Query: 76  -NLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARE 129
            N ++   ++    H   V++    F  M +     P    +  +I    R G L++A +
Sbjct: 350 PNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVK 409

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYN----EAKKLLDAMP 167
           L   +  + D+  W  ++       N +     AKK+++  P
Sbjct: 410 LIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEP 451


>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 734

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 203/652 (31%), Positives = 335/652 (51%), Gaps = 93/652 (14%)

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE--RDVVSWNLMLDGYVE---L 215
           ++L      +I   N+ L+ Y K   +  A   F+++ +  +D VSWN +++ + +    
Sbjct: 36  RILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFDSINDNDKDDVSWNSLINAFSQNHSS 95

Query: 216 DDLDSAWKFFQKIPE-QNVVSWVTMLSGY---ARNGRMLEARRLFDQMPIR-----NVVA 266
                A   F+++    NV+     L+G    A N   + A +    + ++     +V  
Sbjct: 96  SSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQAHSVAVKTGCSGDVYV 155

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM----- 321
            ++++  Y + G + +A +LF  MPERN VSW TMI GY      D+A  + + M     
Sbjct: 156 GSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEE 215

Query: 322 -----------------------------PYKN-----IAAQTAMISGYVQNKRMDEANQ 347
                                          KN     ++   A+++ Y +   +D+A +
Sbjct: 216 IQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVR 275

Query: 348 IFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAG---------- 397
            F+  G  + + W+ M+ GYAQ G  D+A+ LF +M +  ++     + G          
Sbjct: 276 TFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCA 335

Query: 398 -----------------------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
                                        YA+   + DA K FE + ++ + V W ++I+
Sbjct: 336 VVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECV-QQPDVVLWTSIIT 394

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
           G++QN  +   L ++  M  E    +  T+A  L AC+ LAAL  G+Q+H   IK G+  
Sbjct: 395 GYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQMHARIIKYGFKL 454

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           ++ +G++L  MY KCG + +  L+F      DVISWN++I+G + NG+  +A++LFE+M+
Sbjct: 455 EVPIGSALSAMYTKCGSLDDGYLIFWRMPSRDVISWNAMISGLSQNGHGNKALELFEKML 514

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
           +EG+ PDPVTF+ +LSACSH+GLVD G + F+ M + + I P+VEHYACM+D+LSRAG+L
Sbjct: 515 LEGIKPDPVTFVNLLSACSHMGLVDRGWEYFKMMFDEFNIAPMVEHYACMVDILSRAGKL 574

Query: 609 DEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMH 668
           +EA E ++   +     +W  LLGAC+ H+N +LG  A EKL EL   ++S Y LLS+++
Sbjct: 575 NEAKEFIESATVDHGLCLWRILLGACKNHRNYELGVYAGEKLVELGSPESSAYVLLSSIY 634

Query: 669 AEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
              G  + VE+VR  M+  G  K+PGCSWIE+K  +H F+ GD +  +  EI
Sbjct: 635 TALGDRENVERVRRIMKARGVNKEPGCSWIELKGLVHVFVVGDNQHPQVDEI 686



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 124/460 (26%), Positives = 221/460 (48%), Gaps = 42/460 (9%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPD-- 107
           +S+++ Y K G V DARKLF++MP+RN VSW +MI+GY  +D   +A E+F+ M R +  
Sbjct: 157 SSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEEI 216

Query: 108 --LFSWALMITCYTRKGELEKARELFDLLPNKEDTA---CWNAMVAGYAKIGNYNEAKKL 162
              F+   +++  T    +   R++  L       A     NA+V  YAK G+ ++A + 
Sbjct: 217 QNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRT 276

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE-LDDLDS- 220
            +    KN ++W++M++GY + G+   A K F  M    V+     L G +    DL + 
Sbjct: 277 FEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAV 336

Query: 221 ---------AWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
                    A+K    +    + + V M   YA+ G + +AR+ F+ +   +VV W ++I
Sbjct: 337 VEGKQMHSFAFKLGFGLQLYVLSAVVDM---YAKCGSLADARKGFECVQQPDVVLWTSII 393

Query: 272 AAYVQRGQIEEAARLFIEMP-ER---NPVSWTTMIDGYVRIAKLDEARRL---LDQMPYK 324
             YVQ G  E    L+ +M  ER   N ++  +++     +A LD+ +++   + +  +K
Sbjct: 394 TGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQMHARIIKYGFK 453

Query: 325 -NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
             +   +A+ + Y +   +D+   IF ++ + DV+ WN MI G +Q G  ++A+ LF +M
Sbjct: 454 LEVPIGSALSAMYTKCGSLDDGYLIFWRMPSRDVISWNAMISGLSQNGHGNKALELFEKM 513

Query: 384 ----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT---VSWNALISGFLQNEFH 436
               +  D VT+  +++  + +  +D   + F+ M    N    V   A +   L     
Sbjct: 514 LLEGIKPDPVTFVNLLSACSHMGLVDRGWEYFKMMFDEFNIAPMVEHYACMVDILSRAGK 573

Query: 437 LDALKIFVLMTQEGKKADHSTLA--CALSACAHLAALQLG 474
           L+  K F+    E    DH        L AC +    +LG
Sbjct: 574 LNEAKEFI----ESATVDHGLCLWRILLGACKNHRNYELG 609



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 187/399 (46%), Gaps = 51/399 (12%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ----RNLVSWNS 82
           K+G V +A K+F +M ++NTV++ +MIS YA +   + A ++FE M +    +N  +  S
Sbjct: 165 KTGFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALTS 224

Query: 83  MIAGYLHNDKVKEARELFDKMFRPDLFSWA----LMITCYTRKGELEKARELFDLLPNKE 138
           +++    +  V   R++     +  L +       ++T Y + G L+ A   F+   +K 
Sbjct: 225 VLSALTSDVFVYTGRQVHSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDK- 283

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           ++  W+AMV GYA+ G+ ++A KL + M S  ++      S +T  G ++  S     +E
Sbjct: 284 NSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLP-----SEFTLVGVINACSDLCAVVE 338

Query: 199 ERDVVSWNLML-------------DGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR 245
            + + S+   L             D Y +   L  A K F+ + + +VV W ++++GY +
Sbjct: 339 GKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDVVLWTSIITGYVQ 398

Query: 246 NGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEA---------ARLF-----IEMP 291
           NG       L+ +M +  V+  N +  A V R     A         AR+      +E+P
Sbjct: 399 NGDYEGGLNLYGKMQMERVIP-NELTMASVLRACSSLAALDQGKQMHARIIKYGFKLEVP 457

Query: 292 ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK 351
             + +S       Y +   LD+   +  +MP +++ +  AMISG  QN   ++A ++F+K
Sbjct: 458 IGSALSAM-----YTKCGSLDDGYLIFWRMPSRDVISWNAMISGLSQNGHGNKALELFEK 512

Query: 352 IGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
           +       D V +  ++   +  G +D     F+ M ++
Sbjct: 513 MLLEGIKPDPVTFVNLLSACSHMGLVDRGWEYFKMMFDE 551



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 162/350 (46%), Gaps = 30/350 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +T   K G +++A++ F     KN++T+++M++ YA+ G  + A KLF +M    ++
Sbjct: 258 NALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVL 317

Query: 79  SWNSMIAGYLH--ND--KVKEAREL----FDKMFRPDLFSWALMITCYTRKGELEKAREL 130
                + G ++  +D   V E +++    F   F   L+  + ++  Y + G L  AR+ 
Sbjct: 318 PSEFTLVGVINACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLADARKG 377

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN----------SMLSG 180
           F+ +  + D   W +++ GY + G+Y     L   M  + ++             S L+ 
Sbjct: 378 FECV-QQPDVVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLAA 436

Query: 181 YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
             +  +MH  ++  +   + +V   + +   Y +   LD  +  F ++P ++V+SW  M+
Sbjct: 437 LDQGKQMH--ARIIKYGFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMPSRDVISWNAMI 494

Query: 241 SGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
           SG ++NG   +A  LF++M +  +    V +  +++A    G ++     F  M +   +
Sbjct: 495 SGLSQNGHGNKALELFEKMLLEGIKPDPVTFVNLLSACSHMGLVDRGWEYFKMMFDEFNI 554

Query: 297 S-----WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKR 341
           +     +  M+D   R  KL+EA+  ++     +      ++ G  +N R
Sbjct: 555 APMVEHYACMVDILSRAGKLNEAKEFIESATVDHGLCLWRILLGACKNHR 604



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 74/154 (48%), Gaps = 14/154 (9%)

Query: 455 HSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF- 513
           H  L   L  C H   +  GR +H   +K+G ++ ++V N+ + +YAK   + +A  LF 
Sbjct: 11  HRQLLQDLIECTHNKNILKGRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFD 70

Query: 514 --KDADPVDVISWNSLIAGYAINGNATE---AIKLFEEMV-MEGVAPDPVTFIGVLSACS 567
              D D  DV SWNSLI  ++ N +++    AI LF  M+    V P+  T  GV SA S
Sbjct: 71  SINDNDKDDV-SWNSLINAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAAS 129

Query: 568 HVGLVDGGLKLFE------CMTEVYAIEPLVEHY 595
           ++  V  G +         C  +VY    L+  Y
Sbjct: 130 NLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMY 163


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 185/556 (33%), Positives = 294/556 (52%), Gaps = 50/556 (8%)

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP----IRNVVAWNA 269
             D L  A   F+ I E N++ W TM  G+A +   + A  L+  M     + N   +  
Sbjct: 49  HFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPF 108

Query: 270 MIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           ++ +  +     E  ++   +     + +    T++I  YV+  +L++AR++ DQ  +++
Sbjct: 109 LLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRD 168

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-- 383
           + + TA+I+GY     +  A ++FD+I   DVV WN MI GYA+ G   EA+ LF++M  
Sbjct: 169 VVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMK 228

Query: 384 ------------------------VNKDIVTW-------------NTMIAGYAQIRQMDD 406
                                   + + + +W             N +I  Y +  +++ 
Sbjct: 229 TNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVET 288

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
           A  +FE +   ++ +SWN LI G+     + +AL +F  M + G+  +  T+   L ACA
Sbjct: 289 ACGLFEGL-SYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACA 347

Query: 467 HLAALQLGRQIHHLAIK--SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
           HL A+++GR IH    K   G  N      SLI MYAKCG I+ A+ +F       + SW
Sbjct: 348 HLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSW 407

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           N++I G+A++G A  A  +F  M    + PD +TF+G+LSACSH G++D G  +F  M E
Sbjct: 408 NAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKE 467

Query: 585 VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
            Y I P +EHY CMIDLL  +G   EA EM+  M+++P+  IW +LL AC+M+ N++LG 
Sbjct: 468 DYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGE 527

Query: 645 IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQI 704
              + L ++EP+    Y LLSN++A AGRW+EV K+R  +   G +K PGCS IE+ + +
Sbjct: 528 SYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVV 587

Query: 705 HTFLSGDPKQCRTAEI 720
           H F+ GD    R  EI
Sbjct: 588 HEFIIGDKFHPRNREI 603



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 159/321 (49%), Gaps = 21/321 (6%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           I+   ++GR+E+A K+F Q S ++ V+Y ++I+ YA  G +  A+K+F+++P +++VSWN
Sbjct: 145 ISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWN 204

Query: 82  SMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
           +MI+GY      KEA ELF +M     RPD  +   +++   +   +E  R++   + + 
Sbjct: 205 AMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDH 264

Query: 138 ---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
               +    NA++  Y K G    A  L + +  K+++SWN+++ GYT       A   F
Sbjct: 265 GFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLF 324

Query: 195 EAM----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ-----NVVSWVT-MLSGYA 244
           + M    E  + V+   +L     L  ++        I ++     N  S  T ++  YA
Sbjct: 325 QEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYA 384

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTT 300
           + G +  A+++FD +  R++ +WNAMI  +   G+   A  +F  M     E + +++  
Sbjct: 385 KCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVG 444

Query: 301 MIDGYVRIAKLDEARRLLDQM 321
           ++        LD  R +   M
Sbjct: 445 LLSACSHSGMLDLGRHIFRSM 465



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 145/602 (24%), Positives = 233/602 (38%), Gaps = 142/602 (23%)

Query: 89  HNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF------DLLPNKEDTAC 142
           H D +  A  +F+ +  P+L  W  M   +    +   A  L+       LLPN     C
Sbjct: 49  HFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPN-----C 103

Query: 143 WNA--MVAGYAKIGNYNEAKKL----LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEA 196
           +    ++   AK   + E +++    L      ++    S++S Y +NG +  A K F+ 
Sbjct: 104 YTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQ 163

Query: 197 MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF 256
              RDVVS+  ++ GY     + SA K F +IP ++VVSW  M+SGYA  G   EA  LF
Sbjct: 164 SSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELF 223

Query: 257 DQM------PI--------------------RNVVAW-------------NAMIAAYVQR 277
            +M      P                     R V +W             NA+I  Y++ 
Sbjct: 224 KEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKC 283

Query: 278 GQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM----PYKNIAAQTAMI 333
           G++E A  LF  +  ++ +SW T+I GY  +    EA  L  +M       N     +++
Sbjct: 284 GEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSIL 343

Query: 334 SGYVQNKRMDEANQIFDKIGTHDVVCWNV------MIKGYAQCGRMDEAINLFRQMVNKD 387
                   ++    I   I        N       +I  YA+CG ++ A  +F  ++N+ 
Sbjct: 344 PACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRS 403

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMT 447
           + +WN MI G+A   + + A  IF  M  R+N +                          
Sbjct: 404 LSSWNAMIFGFAMHGRANAAFDIFSRM--RKNEI-------------------------- 435

Query: 448 QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY--VNDLFVGNSLITMYAKCGR 505
               + D  T    LSAC+H   L LGR I   ++K  Y     L     +I +    G 
Sbjct: 436 ----EPDDITFVGLLSACSHSGMLDLGRHIFR-SMKEDYKITPKLEHYGCMIDLLGHSG- 489

Query: 506 IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565
                 LFK+A+                        ++   M ME   PD V +  +L A
Sbjct: 490 ------LFKEAE------------------------EMINTMEME---PDGVIWCSLLKA 516

Query: 566 CSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV-----KGMKI 620
           C     V+ G    + + ++    P    Y  + ++ + AGR +E  ++      KGMK 
Sbjct: 517 CKMYANVELGESYAQNLIKIEPKNP--GSYVLLSNIYATAGRWNEVAKIRALLNDKGMKK 574

Query: 621 KP 622
            P
Sbjct: 575 VP 576



 Score =  122 bits (306), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 96/375 (25%), Positives = 171/375 (45%), Gaps = 27/375 (7%)

Query: 48  TYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPD 107
            + S+IS Y +NGR+ DARK+F+Q   R++VS+ ++I GY     +  A+++FD++   D
Sbjct: 140 VHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKD 199

Query: 108 LFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLL- 163
           + SW  MI+ Y   G  ++A ELF  +     + D +   ++V+  A+  +    +++  
Sbjct: 200 VVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHS 259

Query: 164 ---DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
              D     N+   N+++  Y K GE+  A   FE +  +DV+SWN ++ GY  ++    
Sbjct: 260 WIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKE 319

Query: 221 AWKFFQKI----PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNA------M 270
           A   FQ++       N V+ +++L   A  G +   R +   +  R     NA      +
Sbjct: 320 ALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSL 379

Query: 271 IAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ- 329
           I  Y + G IE A ++F  +  R+  SW  MI G+    + + A  +  +M    I    
Sbjct: 380 IDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDD 439

Query: 330 ---TAMISGYVQNKRMDEANQIF-----DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
                ++S    +  +D    IF     D   T  +  +  MI      G   EA  +  
Sbjct: 440 ITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMIN 499

Query: 382 QM-VNKDIVTWNTMI 395
            M +  D V W +++
Sbjct: 500 TMEMEPDGVIWCSLL 514



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 102/460 (22%), Positives = 199/460 (43%), Gaps = 98/460 (21%)

Query: 65  ARKLFEQMPQRNLVSWNSMIAGY-LHNDKV------------------------------ 93
           A  +FE + + NL+ WN+M  G+ L +D V                              
Sbjct: 56  AISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAK 115

Query: 94  ----KEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNA 145
               +E +++   + +     DL+    +I+ Y + G LE AR++FD   ++ D   + A
Sbjct: 116 SKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHR-DVVSYTA 174

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE------ 199
           ++ GYA  G    A+K+ D +P K++VSWN+M+SGY + G    A + F+ M +      
Sbjct: 175 LITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPD 234

Query: 200 --------------------RDVVSW-------------NLMLDGYVELDDLDSAWKFFQ 226
                               R V SW             N ++D Y++  ++++A   F+
Sbjct: 235 ESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFE 294

Query: 227 KIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM----PIRNVVAWNAMIAAYVQRGQIEE 282
            +  ++V+SW T++ GY       EA  LF +M       N V   +++ A    G IE 
Sbjct: 295 GLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEI 354

Query: 283 AARLFIEMPER-----NPVSW-TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGY 336
              + + + +R     N  S  T++ID Y +   ++ A+++ D +  +++++  AMI G+
Sbjct: 355 GRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGF 414

Query: 337 VQNKRMDEANQIFDKIGTHDV----VCWNVMIKGYAQCGRMDEAINLFRQM-----VNKD 387
             + R + A  IF ++  +++    + +  ++   +  G +D   ++FR M     +   
Sbjct: 415 AMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPK 474

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
           +  +  MI          +A ++   M    + V W +L+
Sbjct: 475 LEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLL 514



 Score = 43.1 bits (100), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 75/155 (48%), Gaps = 6/155 (3%)

Query: 461 ALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI---TMYAKCGRIQNAELLFKDAD 517
           +LS   +   LQ  R IH   IK+G  N  +  + LI    +      +  A  +F+   
Sbjct: 5   SLSLLHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQ 64

Query: 518 PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLK 577
             +++ WN++  G+A++ +   A+ L+  M+  G+ P+  TF  +L +C+       G +
Sbjct: 65  EPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQ 124

Query: 578 LFECMTEV-YAIEPLVEHYACMIDLLSRAGRLDEA 611
           +   + ++ Y ++  V  +  +I +  + GRL++A
Sbjct: 125 IHGHVLKLGYDLDLYV--HTSLISMYVQNGRLEDA 157


>gi|354805230|gb|AER41645.1| CRR4 [Oryza punctata]
          Length = 632

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 169/451 (37%), Positives = 268/451 (59%), Gaps = 2/451 (0%)

Query: 285 RLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDE 344
           ++F EM +++ VSW +++  Y+       A  L + MP +N+ +   +++G+ +   M  
Sbjct: 171 QVFDEMVDKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWNTVVAGFARTGDMVT 230

Query: 345 ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQM 404
           A  +FD++ + + V WN+MI GYA  G ++ A ++F +M  KD+V+W  M++ YA+I  +
Sbjct: 231 ARTVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIGDL 290

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK-KADHSTLACALS 463
           D A ++F+ M   +N VSWNA+I+G+  N  + +AL+ F LM  EG+ + D +TL   +S
Sbjct: 291 DTAKELFDHM-PVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVS 349

Query: 464 ACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
           ACA L +++    I     KS     + +GN+LI M+AKCG +  A+ +F   +   +I+
Sbjct: 350 ACAQLGSVEYCNWISSFIGKSNTHLTVALGNALIDMFAKCGDVGRAQSIFYKMETRCIIT 409

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMT 583
           W ++I+G+A NG   EA+ ++  M  EGV  D   FI  L+AC+H GL+  G  +F  M 
Sbjct: 410 WTTMISGFAFNGLCREALLVYNNMCREGVELDGTVFIAALAACTHGGLLQEGWSIFNEMV 469

Query: 584 EVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLG 643
           E Y I+P +EHY C++DLL RAG L EA   ++ M ++P+  IW TLL +C  H N +L 
Sbjct: 470 EQYNIQPRMEHYGCVVDLLGRAGNLQEAILFIESMPLEPSVVIWVTLLSSCVAHGNAELI 529

Query: 644 RIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQ 703
               +K++ELEP  +S   L+SN  A  GRWD V   R SM   G +K PG S I+V ++
Sbjct: 530 EYVSKKITELEPFNSSYQVLVSNCSALEGRWDGVIGARTSMRNWGIEKVPGSSLIQVGSE 589

Query: 704 IHTFLSGDPKQCRTAEICNTLKTLAAQIRNT 734
           +H FL+ D +  R  EI  T+  L A +R+T
Sbjct: 590 VHEFLAKDTRHERRKEIYETVDGLMALMRHT 620



 Score =  202 bits (513), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 126/389 (32%), Positives = 206/389 (52%), Gaps = 18/389 (4%)

Query: 192 KFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLE 251
           + F+ M ++DVVSWN ++  Y+   D   A   F+ +PE+NVVSW T+++G+AR G M+ 
Sbjct: 171 QVFDEMVDKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWNTVVAGFARTGDMVT 230

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKL 311
           AR +FD+MP RN V+WN MI+ Y   G +E A  +F  M +++ VSWT M+  Y +I  L
Sbjct: 231 ARTVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIGDL 290

Query: 312 DEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH-----DVVCWNVMIKG 366
           D A+ L D MP KN+ +  AMI+GY  N R DEA + F  +        D      ++  
Sbjct: 291 DTAKELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSA 350

Query: 367 YAQCGRMDEAINLFRQMVNKD-----IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
            AQ G + E  N     + K      +   N +I  +A+   +  A  IF +M + R  +
Sbjct: 351 CAQLGSV-EYCNWISSFIGKSNTHLTVALGNALIDMFAKCGDVGRAQSIFYKM-ETRCII 408

Query: 422 SWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLA 481
           +W  +ISGF  N    +AL ++  M +EG + D +    AL+AC H   LQ G  I +  
Sbjct: 409 TWTTMISGFAFNGLCREALLVYNNMCREGVELDGTVFIAALAACTHGGLLQEGWSIFNEM 468

Query: 482 IKSGYVNDLFVG-NSLITMYAKCGRIQNAELLFKDADPVD--VISWNSLIAGYAINGNAT 538
           ++   +         ++ +  + G +Q A +LF ++ P++  V+ W +L++    +GNA 
Sbjct: 469 VEQYNIQPRMEHYGCVVDLLGRAGNLQEA-ILFIESMPLEPSVVIWVTLLSSCVAHGNA- 526

Query: 539 EAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
           E I+   + + E + P   ++  ++S CS
Sbjct: 527 ELIEYVSKKITE-LEPFNSSYQVLVSNCS 554



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 173/338 (51%), Gaps = 50/338 (14%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKE 95
           ++F +M  K+ V++NS++  Y  +G    A  LFE MP+RN+VSWN+++AG+     +  
Sbjct: 171 QVFDEMVDKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWNTVVAGFARTGDMVT 230

Query: 96  ARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGN 155
           AR +FD+M   +  SW LMI+ Y   G++E AR +FD + +++D   W AMV+ YAKIG+
Sbjct: 231 ARTVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRM-DQKDVVSWTAMVSAYAKIGD 289

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM--------EERDVVS--- 204
            + AK+L D MP KN+VSWN+M++GY  N     A + F+ M        +E  +VS   
Sbjct: 290 LDTAKELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVS 349

Query: 205 ------------W-----------------NLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
                       W                 N ++D + +  D+  A   F K+  + +++
Sbjct: 350 ACAQLGSVEYCNWISSFIGKSNTHLTVALGNALIDMFAKCGDVGRAQSIFYKMETRCIIT 409

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMP 291
           W TM+SG+A NG   EA  +++ M    V      + A +AA    G ++E   +F EM 
Sbjct: 410 WTTMISGFAFNGLCREALLVYNNMCREGVELDGTVFIAALAACTHGGLLQEGWSIFNEMV 469

Query: 292 ERNPVS-----WTTMIDGYVRIAKLDEARRLLDQMPYK 324
           E+  +      +  ++D   R   L EA   ++ MP +
Sbjct: 470 EQYNIQPRMEHYGCVVDLLGRAGNLQEAILFIESMPLE 507



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 5/110 (4%)

Query: 443 FVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
           +V M  +G   +  T    L ACA L   +    +H   ++ G+ +D+FV N+L+ +Y +
Sbjct: 98  YVAMRAQGVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYYR 157

Query: 503 CGRIQNAEL-----LFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
           CG      +     +F +    DV+SWNS++  Y  +G+AT A+ LFE M
Sbjct: 158 CGGGGAGGVGAARQVFDEMVDKDVVSWNSIVGVYMSSGDATGAMGLFEAM 207


>gi|449522252|ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37310-like [Cucumis sativus]
          Length = 635

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 188/604 (31%), Positives = 315/604 (52%), Gaps = 32/604 (5%)

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           D    + +++ Y+K G+  +A  +   +P KNI SWN++   YT +       K F ++ 
Sbjct: 37  DNFLGSKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNALFISYTLHNMHTDLLKLFSSLV 96

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
             +  S ++  D +     L +    F               SG A+       RR  + 
Sbjct: 97  NSN--STDVKPDRFTVTCSLKALASLFSN-------------SGLAKEVHSFILRRGLEY 141

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
               ++   NA+I  Y +  ++  A  +F  MPER+ VSW  M+ GY +    +E + L 
Sbjct: 142 ----DIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNAMLAGYSQGGSYEECKELF 197

Query: 319 DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH----------DVVCWNVMIKGYA 368
             M   ++  +   ++     +   ++N +   I  H          DV  WN +I  YA
Sbjct: 198 RVM-LSSVEVKPNALTAVSVLQACAQSNDLTFGIEVHRFVNESQIKMDVSLWNAVIGLYA 256

Query: 369 QCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
           +CG +D A  LF +M  KD +T+ +MI+GY     ++ A+ +F E  +R    +WNA+IS
Sbjct: 257 KCGILDYARELFEEMPEKDGITYCSMISGYMVHGFVNQAMDLFREQ-ERPRLPTWNAVIS 315

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
           G +QN     A+ IF  M   G + +  TLA  L   +H + L+ G++IH  AI++ Y  
Sbjct: 316 GLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTYDR 375

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           +++V  ++I  YAKCG +  A+L+F       +I+W S+I+ YA++G+A  A+ LF EM+
Sbjct: 376 NIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEML 435

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
             G+ PD VTF  VL+AC+H G +D   K+F  +   Y I+PLVEHYACM+ +LSRAG+L
Sbjct: 436 TNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSRAGKL 495

Query: 609 DEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMH 668
            +A E +  M ++P A +WG LL    +  +++LG+   ++L E+EP+ T  Y +++N++
Sbjct: 496 SDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEPENTGNYVIMANLY 555

Query: 669 AEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLA 728
           +++GRW + + +R  M+    +K PG SWIE    +  F        RT E+   L+ L 
Sbjct: 556 SQSGRWKDADTIRDLMKEVRLKKIPGNSWIETSGGMQRFCXRH-SSVRTPEVYGMLEGLL 614

Query: 729 AQIR 732
             ++
Sbjct: 615 GLVK 618



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 212/429 (49%), Gaps = 34/429 (7%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM--- 72
           F  +K I+   KSG + +A  +F ++ +KN  ++N++  +Y  +    D  KLF  +   
Sbjct: 39  FLGSKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNALFISYTLHNMHTDLLKLFSSLVNS 98

Query: 73  ------PQRNLV--SWNSMIAGYLHNDKVKEARE-LFDKMFRPDLFSWALMITCYTRKGE 123
                 P R  V  S  ++ + + ++   KE    +  +    D+F    +IT Y+R  E
Sbjct: 99  NSTDVKPDRFTVTCSLKALASLFSNSGLAKEVHSFILRRGLEYDIFVVNALITFYSRCDE 158

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK-----NIVSWNSML 178
           L  AR +FD +P + DT  WNAM+AGY++ G+Y E K+L   M S      N ++  S+L
Sbjct: 159 LVLARIMFDRMPER-DTVSWNAMLAGYSQGGSYEECKELFRVMLSSVEVKPNALTAVSVL 217

Query: 179 SGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
               ++ ++    +    + E     DV  WN ++  Y +   LD A + F+++PE++ +
Sbjct: 218 QACAQSNDLTFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGILDYARELFEEMPEKDGI 277

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER- 293
           ++ +M+SGY  +G + +A  LF +     +  WNA+I+  VQ  + E A  +F  M    
Sbjct: 278 TYCSMISGYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHG 337

Query: 294 ---NPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEAN 346
              N V+  +++  +   + L   + +    +     +NI   TA+I  Y +   +  A 
Sbjct: 338 CRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQ 397

Query: 347 QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIR 402
            +FD+I    ++ W  +I  YA  G  + A++LF +M    +  D VT+ +++A  A   
Sbjct: 398 LVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSG 457

Query: 403 QMDDAVKIF 411
           ++D+A KIF
Sbjct: 458 ELDEAWKIF 466



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 192/395 (48%), Gaps = 34/395 (8%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----- 104
           N++I+ Y++   +  AR +F++MP+R+ VSWN+M+AGY      +E +ELF  M      
Sbjct: 147 NALITFYSRCDELVLARIMFDRMPERDTVSWNAMLAGYSQGGSYEECKELFRVMLSSVEV 206

Query: 105 RPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKK 161
           +P+  +   ++    +  +L    E+   +     K D + WNA++  YAK G  + A++
Sbjct: 207 KPNALTAVSVLQACAQSNDLTFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGILDYARE 266

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA 221
           L + MP K+ +++ SM+SGY  +G ++ A   F   E   + +WN ++ G V+ +  + A
Sbjct: 267 LFEEMPEKDGITYCSMISGYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGA 326

Query: 222 WKFFQKIPEQ----NVVSWVTMLSGYA-----RNGRMLEA---RRLFDQMPIRNVVAWNA 269
              F+ +       N V+  ++L  ++     + G+ +     R  +D    RN+    A
Sbjct: 327 VDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTYD----RNIYVATA 382

Query: 270 MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
           +I +Y + G +  A  +F ++  R+ ++WT++I  Y      + A  L  +M    I   
Sbjct: 383 IIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPD 442

Query: 330 ----TAMISGYVQNKRMDEANQIFDKI----GTHDVV-CWNVMIKGYAQCGRMDEAINLF 380
               T++++    +  +DEA +IF+ +    G   +V  +  M+   ++ G++ +A+   
Sbjct: 443 QVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFI 502

Query: 381 RQM-VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            +M +      W  ++ G +    ++    +F+ +
Sbjct: 503 SKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRL 537



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 160/323 (49%), Gaps = 20/323 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I    K G ++ A ++F +M +K+ +TY SMIS Y  +G VN A  LF +  +  L 
Sbjct: 249 NAVIGLYAKCGILDYARELFEEMPEKDGITYCSMISGYMVHGFVNQAMDLFREQERPRLP 308

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDL- 133
           +WN++I+G + N++ + A ++F  M     RP+  + A ++  ++    L+  +E+    
Sbjct: 309 TWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYA 368

Query: 134 LPNKEDTACW--NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA- 190
           + N  D   +   A++  YAK G  + A+ + D +  +++++W S++S Y  +G+ ++A 
Sbjct: 369 IRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVAL 428

Query: 191 SKFFEAME---ERDVVSWNLMLDGYVELDDLDSAWKFFQK-IPEQN----VVSWVTMLSG 242
           S F+E +    + D V++  +L       +LD AWK F   +PE      V  +  M+  
Sbjct: 429 SLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGV 488

Query: 243 YARNGRMLEARRLFDQMPIRNVV-AWNAMIAAYVQRGQIEEAARLF---IEMPERNPVSW 298
            +R G++ +A     +MP+      W A++      G +E    +F    E+   N  ++
Sbjct: 489 LSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEPENTGNY 548

Query: 299 TTMIDGYVRIAKLDEARRLLDQM 321
             M + Y +  +  +A  + D M
Sbjct: 549 VIMANLYSQSGRWKDADTIRDLM 571



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 99/434 (22%), Positives = 199/434 (45%), Gaps = 31/434 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F  N  IT   +   +  A  +F +M +++TV++N+M++ Y++ G   + ++LF  M  
Sbjct: 143 IFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNAMLAGYSQGGSYEECKELFRVMLS 202

Query: 75  RNLVSWNSMIAGYL------HND---KVKEARELFDKMFRPDLFSWALMITCYTRKGELE 125
              V  N++ A  +       ND    ++  R + +   + D+  W  +I  Y + G L+
Sbjct: 203 SVEVKPNALTAVSVLQACAQSNDLTFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGILD 262

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
            ARELF+ +P K D   + +M++GY   G  N+A  L        + +WN+++SG  +N 
Sbjct: 263 YARELFEEMPEK-DGITYCSMISGYMVHGFVNQAMDLFREQERPRLPTWNAVISGLVQNN 321

Query: 186 EMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKF----FQKIPEQNVVSWV 237
               A   F AM+      + V+   +L  +     L    +      +   ++N+    
Sbjct: 322 RQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVAT 381

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----PER 293
            ++  YA+ G +  A+ +FDQ+  R+++AW ++I+AY   G    A  LF EM     + 
Sbjct: 382 AIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEMLTNGIQP 441

Query: 294 NPVSWTTMIDGYVRIAKLDEARR----LLDQMPYKNIAAQTAMISGYVQNK-RMDEANQI 348
           + V++T+++       +LDEA +    LL +   + +    A + G +    ++ +A + 
Sbjct: 442 DQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEF 501

Query: 349 FDKIGTHDVV-CWNVMIKGYAQCGRMDEAINLFRQMVN---KDIVTWNTMIAGYAQIRQM 404
             K+        W  ++ G +  G ++    +F ++     ++   +  M   Y+Q  + 
Sbjct: 502 ISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEPENTGNYVIMANLYSQSGRW 561

Query: 405 DDAVKIFEEMGKRR 418
            DA  I + M + R
Sbjct: 562 KDADTIRDLMKEVR 575



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 97/233 (41%), Gaps = 48/233 (20%)

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLF 513
           ++S     +  C      ++G+Q+H   + S  V D F+G+ LI+ Y+K G I++A  +F
Sbjct: 2   NYSAYGRLIQHCTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVF 61

Query: 514 KDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG---VAPDPVTFIGVLSACS--- 567
                 ++ SWN+L   Y ++   T+ +KLF  +V      V PD  T    L A +   
Sbjct: 62  GKIPRKNIFSWNALFISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLF 121

Query: 568 ---------HVGLVDGGLKLFECMTEVYAIEPLVEHYA---------------------- 596
                    H  ++  GL+      +++ +  L+  Y+                      
Sbjct: 122 SNSGLAKEVHSFILRRGLEY-----DIFVVNALITFYSRCDELVLARIMFDRMPERDTVS 176

Query: 597 --CMIDLLSRAGRLDEAFE----MVKGMKIKPNAGIWGTLLGACRMHQNIKLG 643
              M+   S+ G  +E  E    M+  +++KPNA    ++L AC    ++  G
Sbjct: 177 WNAMLAGYSQGGSYEECKELFRVMLSSVEVKPNALTAVSVLQACAQSNDLTFG 229


>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
 gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
          Length = 893

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 230/816 (28%), Positives = 384/816 (47%), Gaps = 168/816 (20%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           Q NT   NS++  Y K+  +  A +LF++ P  N++SWN +I+G   N   +++   F K
Sbjct: 78  QSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILISGCNQNFSFEDSWRNFCK 137

Query: 103 M----FRPDLFSW-----------------------------------ALMITCYTRKGE 123
           M    F P+ F++                                   A MI  + +   
Sbjct: 138 MRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRAGMIDLFAKLCS 197

Query: 124 LEKARELF-DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSML 178
            E A  +F D+L   E+  CWNA+++G  K      A  L   M  +    N  +++S+L
Sbjct: 198 FEDALRVFQDVLC--ENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSIL 255

Query: 179 SG-----------------------------------YTKNGEMHLASKFFEAMEERDVV 203
           +                                    Y K  +M  A K F  M  R+VV
Sbjct: 256 TACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVV 315

Query: 204 SWNLMLDGYVELDDLDSAWKFFQ---KIPEQ-----------------------NVVSWV 237
           SW  ++ G+V+ DD  SA+ FF+   K+ E+                        + SW+
Sbjct: 316 SWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWI 375

Query: 238 -------------TMLSGYARNGRMLEARRLFDQM-PIRNVVAWNAMIAAYVQRGQIEEA 283
                         +++ Y++ G +  + R+F +M   +N+  W  MI+A+ Q G    A
Sbjct: 376 FKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRA 435

Query: 284 ARLFIEM------PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYV 337
             LF  M      P++   S    I   + + +L     +L    + +I+  +++ + Y 
Sbjct: 436 VELFQRMLQEGLRPDKFCSSSVLSIIDSLSLGRLIHCY-ILKIGLFTDISVGSSLFTMYS 494

Query: 338 QNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-------------- 383
           +   ++E+  +F+++   D V W  MI G+++    ++A+ LFR+M              
Sbjct: 495 KCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTA 554

Query: 384 -------------------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRR 418
                                    V K+++    ++  Y++   +  A ++F+ M  ++
Sbjct: 555 ALTACSALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVFD-MLPQK 613

Query: 419 NTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIH 478
           +  S ++L+SG+ QN +  DAL +F  +       D  T++  + A A L +L +G Q+H
Sbjct: 614 DQFSCSSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVIGAVAILNSLDIGTQLH 673

Query: 479 HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNAT 538
               K G   ++ VG+SL+TMY+KCG I     +F+  +  D+ISW ++I  YA +G   
Sbjct: 674 ACVTKMGLNAEVSVGSSLVTMYSKCGSIDECHKVFEQIEKPDLISWTAMIVSYAQHGKGA 733

Query: 539 EAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACM 598
           EA+K+++ M  EG  PD VTF+GVLSACSH G+V+ G      M + Y IEP   HYACM
Sbjct: 734 EALKVYDLMRKEGTKPDSVTFVGVLSACSHNGMVEEGYSHLNSMAKEYGIEPGYYHYACM 793

Query: 599 IDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKT 658
           +DLL R+GRL EA   +  M I+P+A +WG LL AC++H +I+LGR+A +++ ELEP + 
Sbjct: 794 VDLLGRSGRLKEAERFINNMPIEPDALLWGILLAACKVHGDIELGRLAAKRVIELEPCEA 853

Query: 659 SCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPG 694
             Y  LSN+ A+ G W++V K+R  MEG+G +K+PG
Sbjct: 854 GAYVTLSNICADMGWWEDVMKIRSLMEGTGVKKEPG 889



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 131/504 (25%), Positives = 232/504 (46%), Gaps = 89/504 (17%)

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDD 217
            A  L  A+   N    NS++  Y K+  M  A + F+     +V+SWN+++ G  +   
Sbjct: 68  HAHFLKTAILQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILISGCNQNFS 127

Query: 218 LDSAWKFFQKI------PEQ----NVVSWVTML--------------------SGYARNG 247
            + +W+ F K+      P Q    +V+S  T L                    +GY R G
Sbjct: 128 FEDSWRNFCKMRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRAG 187

Query: 248 ---------RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----N 294
                       +A R+F  +   NVV WNA+I+  V+  +   A  LF +M  R    N
Sbjct: 188 MIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPN 247

Query: 295 PVSWTTMIDGYVRIAKLDEARR----LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD 350
             ++++++     + +L+  R     ++     +++   TA+I  Y + + MD+A + F 
Sbjct: 248 SFTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFL 307

Query: 351 KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM------VNKDIVT-------------- 390
           ++   +VV W  +I G+ Q      A + F++M      +N   +T              
Sbjct: 308 RMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKE 367

Query: 391 ------W-------------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFL 431
                 W             + +I  Y++I  +D + ++F EM   +N   W  +IS F 
Sbjct: 368 AVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFA 427

Query: 432 QNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLF 491
           Q+     A+++F  M QEG + D     C+ S  + + +L LGR IH   +K G   D+ 
Sbjct: 428 QSGSTGRAVELFQRMLQEGLRPDK---FCSSSVLSIIDSLSLGRLIHCYILKIGLFTDIS 484

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
           VG+SL TMY+KCG ++ +  +F+     D +SW S+I G++ + +A +A++LF EM++E 
Sbjct: 485 VGSSLFTMYSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEE 544

Query: 552 VAPDPVTFIGVLSACSHVGLVDGG 575
           + PD +T    L+ACS +  ++ G
Sbjct: 545 IRPDQMTLTAALTACSALHSLEKG 568



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 153/330 (46%), Gaps = 34/330 (10%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM------PQR 75
            T   K G +EE+  +F QM  K+ V++ SMI+ ++++     A +LF +M      P +
Sbjct: 490 FTMYSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQ 549

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKARELF 131
             ++        LH+  +++ +E+     R     ++     ++  Y++ G +  AR +F
Sbjct: 550 MTLTAALTACSALHS--LEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVF 607

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKL----------LDAMPSKNIVSWNSMLSGY 181
           D+LP K+  +C +++V+GYA+ G   +A  L          +D+    +++   ++L+  
Sbjct: 608 DMLPQKDQFSC-SSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVIGAVAILNSL 666

Query: 182 TKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
               ++H          E  V S   ++  Y +   +D   K F++I + +++SW  M+ 
Sbjct: 667 DIGTQLHACVTKMGLNAEVSVGS--SLVTMYSKCGSIDECHKVFEQIEKPDLISWTAMIV 724

Query: 242 GYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
            YA++G+  EA +++D M         V +  +++A    G +EE       M +   + 
Sbjct: 725 SYAQHGKGAEALKVYDLMRKEGTKPDSVTFVGVLSACSHNGMVEEGYSHLNSMAKEYGIE 784

Query: 298 -----WTTMIDGYVRIAKLDEARRLLDQMP 322
                +  M+D   R  +L EA R ++ MP
Sbjct: 785 PGYYHYACMVDLLGRSGRLKEAERFINNMP 814



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 132/296 (44%), Gaps = 43/296 (14%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL---- 77
           +    K G +  A ++F  + QK+  + +S++S YA+NG + DA  LF ++   +L    
Sbjct: 591 VNMYSKCGAIVLARRVFDMLPQKDQFSCSSLVSGYAQNGYIEDALLLFHEIRMADLWIDS 650

Query: 78  VSWNSMIAGYLHNDKVKEAREL---FDKM-FRPDLFSWALMITCYTRKGELEKARELFDL 133
            + +S+I      + +    +L     KM    ++   + ++T Y++ G +++  ++F+ 
Sbjct: 651 FTVSSVIGAVAILNSLDIGTQLHACVTKMGLNAEVSVGSSLVTMYSKCGSIDECHKVFEQ 710

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHL 189
           +  K D   W AM+  YA+ G   EA K+ D M  +      V++  +LS  + NG    
Sbjct: 711 I-EKPDLISWTAMIVSYAQHGKGAEALKVYDLMRKEGTKPDSVTFVGVLSACSHNG---- 765

Query: 190 ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRM 249
                            ++ +GY  L+ +   +       E     +  M+    R+GR+
Sbjct: 766 -----------------MVEEGYSHLNSMAKEYGI-----EPGYYHYACMVDLLGRSGRL 803

Query: 250 LEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE---EAARLFIEMPERNPVSWTTM 301
            EA R  + MPI  + + W  ++AA    G IE    AA+  IE+      ++ T+
Sbjct: 804 KEAERFINNMPIEPDALLWGILLAACKVHGDIELGRLAAKRVIELEPCEAGAYVTL 859


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 191/541 (35%), Positives = 286/541 (52%), Gaps = 49/541 (9%)

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----N 294
           ++  YAR G +  AR++FD+ P   V AWNAMI AY +RG + EA  L+  M       +
Sbjct: 45  LIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPD 104

Query: 295 PVSWTTMIDGYVRIAKLDEA----RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD 350
             ++T ++    R   L       R+ +DQ    ++    A+++ Y +  +MDEA ++FD
Sbjct: 105 SSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFD 164

Query: 351 KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK------------------------ 386
           K+G  D+VCW  MI G AQ G+  EA++++RQM  K                        
Sbjct: 165 KMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKM 224

Query: 387 ---------------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFL 431
                          D++   +++  YA+   ++ A  +F  M   +N +SW+ALISGF 
Sbjct: 225 GLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRM-LYKNVISWSALISGFA 283

Query: 432 QNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLF 491
           QN F  +AL++ V M   G K D  +L   L AC+ +  L+LG+ +H   ++  +  D  
Sbjct: 284 QNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRRLHF-DCV 342

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
              ++I MY+KCG +  A  +F      D ISWN++IA Y I+G+  EA+ LF +M    
Sbjct: 343 SSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETN 402

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
           V PD  TF  +LSA SH GLV+ G   F  M   Y I+P  +HYACM+DLLSRAGR++EA
Sbjct: 403 VKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEA 462

Query: 612 FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEA 671
            E+++ M  +P   IW  LL  C  H    +G +A +K+ EL P     Y+L+SN  A A
Sbjct: 463 QELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFATA 522

Query: 672 GRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
            RWDEV +VR  M+ +G +K PG S +EV  ++H FL  D    +  EI   L  L  ++
Sbjct: 523 RRWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFLMEDKSHHQYEEIMQVLGKLDYEM 582

Query: 732 R 732
           +
Sbjct: 583 K 583



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 189/380 (49%), Gaps = 36/380 (9%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPD 107
           +I +YA+ G +  AR++F++ PQ  + +WN+MI  Y     + EA  L+ +M     RPD
Sbjct: 45  LIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPD 104

Query: 108 LFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLD 164
             ++ +++   TR  +L    E +    ++   +D     A++  YAK G  +EA ++ D
Sbjct: 105 SSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFD 164

Query: 165 AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDD------- 217
            M  +++V W +M++G  +NG+   A   +  M ++ V    +++ G ++          
Sbjct: 165 KMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKM 224

Query: 218 -LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ 276
            L       +K    +V+   +++  YA+NG +  A  +F +M  +NV++W+A+I+ + Q
Sbjct: 225 GLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQ 284

Query: 277 RGQIEEAARLFIEMP----ERNPVSWTTMI-----DGYVRIAKLDEA---RRLLDQMPYK 324
            G    A +L ++M     + + VS  +++      G++++ K       RRL     + 
Sbjct: 285 NGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRRL-----HF 339

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM- 383
           +  + TA+I  Y +   +  A  +FD+I   D + WN +I  Y   G  +EA++LF QM 
Sbjct: 340 DCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMR 399

Query: 384 ---VNKDIVTWNTMIAGYAQ 400
              V  D  T+ ++++ ++ 
Sbjct: 400 ETNVKPDHATFASLLSAFSH 419



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/400 (23%), Positives = 190/400 (47%), Gaps = 41/400 (10%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP---- 106
           ++++ YAK G++++A ++F++M +R+LV W +MI G   N + +EA +++ +M +     
Sbjct: 145 AVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEG 204

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLL 163
           D      +I   T  G  +    +   +  K+   D     ++V  YAK G+   A  + 
Sbjct: 205 DGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVF 264

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLML-----DGYVE 214
             M  KN++SW++++SG+ +NG    A +    M+    + D VS   +L      G+++
Sbjct: 265 RRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLK 324

Query: 215 LDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
           L    S   +  +    + VS   ++  Y++ G +  AR +FDQ+  R+ ++WNA+IA+Y
Sbjct: 325 LG--KSVHGYIVRRLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASY 382

Query: 275 VQRGQIEEAARLFIEMPERN----PVSWTTMIDGYVRIAKLDEARRLLDQM--PYKNIAA 328
              G  EEA  LF++M E N      ++ +++  +     +++ R     M   YK   +
Sbjct: 383 GIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPS 442

Query: 329 Q---TAMISGYVQNKRMDEANQIFDKIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
           +     M+    +  R++EA ++ + + T   +  W  ++ G    G+      L  +M 
Sbjct: 443 EKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKF-----LIGEMA 497

Query: 385 NKDIVTWNTMIAG--------YAQIRQMDDAVKIFEEMGK 416
            K ++  N    G        +A  R+ D+  ++ + M K
Sbjct: 498 AKKVLELNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKK 537



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 10/160 (6%)

Query: 476 QIHHLAIKSGYVNDLFVGNS---LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYA 532
           +IH L I +G       GNS   LI  YA+ G I++A  +F  +    V +WN++I  Y+
Sbjct: 25  KIHALMILTGIFGH---GNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYS 81

Query: 533 INGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH-VGLVDGGLKLFECMTEVYAIEPL 591
             G   EA+ L+  M  EGV PD  T+  VL AC+  + L  G     + + + Y  +  
Sbjct: 82  RRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVF 141

Query: 592 VEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           V   A +++L ++ G++DEA  +   M  + +   W T++
Sbjct: 142 VG--AAVLNLYAKCGKMDEAMRVFDKMG-RRDLVCWTTMI 178


>gi|413932452|gb|AFW67003.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 719

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 203/640 (31%), Positives = 323/640 (50%), Gaps = 53/640 (8%)

Query: 149 GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLM 208
           G  K G   +A  L D MP KN+V+W + +SG T+NG    A+  F  M E  V   +  
Sbjct: 79  GLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLESGVAPNDFA 138

Query: 209 LDGYVELDDLDSAWKFFQKIPEQNVVS------WV--TMLSGYARNGRMLEARRLFDQMP 260
            +  +       A    +++    V +      W+   ++  Y+R G +  A  +F +M 
Sbjct: 139 CNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEVFRRME 198

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARR 316
             +VV + ++++A  + G++  A  +  +M  +    N  + T+M+    R         
Sbjct: 199 APDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAECPRGIGEQIHGY 258

Query: 317 LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
           +L  M  +++ A TA+I  Y +      A  +F+ + + +VV W  M++   + GR+D+A
Sbjct: 259 MLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQLCIRDGRLDDA 318

Query: 377 INLFRQMVNK------------------------------------DIVTWNTMIAGYAQ 400
           + +F +M+++                                    DI   N +++ Y +
Sbjct: 319 LRVFSEMISEGVQPNEFAFSIALSACGSVCLGRQIHCSAIKRDLMTDIRVSNALLSMYGR 378

Query: 401 IRQMDDAVKIFEEMGKRRNT--VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
              + +   +   +GK  N   VSW A IS   QN F   A+ + + M  EG   +    
Sbjct: 379 SGFVSELEAV---LGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAF 435

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
           +  LS+CA LA L  GRQ+H LA+K G    +  GN+LI MY+KCGRI +A L F   D 
Sbjct: 436 SSGLSSCADLALLHQGRQLHCLALKLGCDFKVCTGNALINMYSKCGRIGSARLAFDVMDT 495

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
            DV+SWNSLI G A +G+A  A++ F EM      PD  TF+ VL  C+H GLV  G   
Sbjct: 496 HDVMSWNSLIHGLAQHGDANLALETFSEMCSSDWRPDDSTFLSVLVGCNHAGLVKEGETF 555

Query: 579 FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQ 638
           F  MT+ Y + P   HYACMID+L R GR  EA  M++ M  +P+  IW TLL +C++H+
Sbjct: 556 FRQMTDRYGLTPTPSHYACMIDMLGRNGRFAEALRMIENMPFEPDVLIWKTLLASCKLHR 615

Query: 639 NIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWI 698
           N+ +G++A +KL EL  + ++ Y L+SN++A    W + E+VR  M+  G +K  G SWI
Sbjct: 616 NLDIGKLAADKLMELSERDSASYVLMSNLYAMHEEWRDAERVRRRMDEIGVKKDAGWSWI 675

Query: 699 EVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNTPLAV 738
           EVKN+++TF++GD     +  I   L  L   +++T L V
Sbjct: 676 EVKNEVNTFVAGDMSHPDSTSIYQMLAELLVVMQDTDLDV 715



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 122/475 (25%), Positives = 216/475 (45%), Gaps = 29/475 (6%)

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
            A    DVV     LDG ++   L  A   F ++P +NVV+W T +SG  RNGR   A  
Sbjct: 63  HAAPPPDVVLDCKRLDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAAT 122

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-------SW--TTMIDGY 305
           +F  M + + VA N               A    E      V       +W  + +I+ Y
Sbjct: 123 MFADM-LESGVAPNDFACNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELY 181

Query: 306 VRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC-WNVMI 364
            R   L  A  +  +M   ++   T+++S   +N  +  A  +  ++    +    + M 
Sbjct: 182 SRCGSLRAAEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMT 241

Query: 365 KGYAQCGR-MDEAIN--LFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
              A+C R + E I+  + + M ++ +     +I  Y++      A  +FE + + +N V
Sbjct: 242 SMLAECPRGIGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENL-ESKNVV 300

Query: 422 SWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLA 481
           SW +++   +++    DAL++F  M  EG + +    + ALSAC  +    LGRQIH  A
Sbjct: 301 SWCSMMQLCIRDGRLDDALRVFSEMISEGVQPNEFAFSIALSACGSVC---LGRQIHCSA 357

Query: 482 IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
           IK   + D+ V N+L++MY + G +   E +    +  D++SW + I+    NG + +A+
Sbjct: 358 IKRDLMTDIRVSNALLSMYGRSGFVSELEAVLGKIENPDLVSWTAAISANFQNGFSEKAV 417

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601
            L  +M  EG  P+   F   LS+C+ + L+  G +L  C+      +  V     +I++
Sbjct: 418 ALLLQMHSEGFTPNDYAFSSGLSSCADLALLHQGRQL-HCLALKLGCDFKVCTGNALINM 476

Query: 602 LSRAGRLDE---AFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653
            S+ GR+     AF+++    +      W +L+     H +  L   A+E  SE+
Sbjct: 477 YSKCGRIGSARLAFDVMDTHDVMS----WNSLIHGLAQHGDANL---ALETFSEM 524



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 131/603 (21%), Positives = 245/603 (40%), Gaps = 100/603 (16%)

Query: 20  KKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV- 78
           K++  L KSGR+ +A+ +F +M +KN V + + IS   +NGR   A  +F  M +  +  
Sbjct: 75  KRLDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLESGVAP 134

Query: 79  ------------------------------------SW--NSMIAGYLHNDKVKEARELF 100
                                               +W  + +I  Y     ++ A E+F
Sbjct: 135 NDFACNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEVF 194

Query: 101 DKMFRPDLFSWALMITCYTRKGELEKARELF------DLLPNKEDTACWNAMVAGYAKIG 154
            +M  PD+  +  +++   R GEL +A ++        L PN+       +M+A   +  
Sbjct: 195 RRMEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTM---TSMLAECPRGI 251

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE 214
                  +L  M S+++ +  +++  Y++ G+   A   FE +E ++VVSW  M+   + 
Sbjct: 252 GEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQLCIR 311

Query: 215 LDDLDSAWKFFQKI------PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN 268
              LD A + F ++      P +   S      G    GR +    +   + + ++   N
Sbjct: 312 DGRLDDALRVFSEMISEGVQPNEFAFSIALSACGSVCLGRQIHCSAIKRDL-MTDIRVSN 370

Query: 269 AMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK---- 324
           A+++ Y + G + E   +  ++   + VSWT  I    +    ++A  LL QM  +    
Sbjct: 371 ALLSMYGRSGFVSELEAVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTP 430

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFD---KIGTHDVVC-WNVMIKGYAQCGRMDEAINLF 380
           N  A ++ +S       + +  Q+     K+G    VC  N +I  Y++CGR+  A   F
Sbjct: 431 NDYAFSSGLSSCADLALLHQGRQLHCLALKLGCDFKVCTGNALINMYSKCGRIGSARLAF 490

Query: 381 RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
             M   D+++WN++I G AQ    + A++ F EM     +  W                 
Sbjct: 491 DVMDTHDVMSWNSLIHGLAQHGDANLALETFSEMC----SSDW----------------- 529

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ-IHHLAIKSGYVNDLFVGNSLITM 499
                      + D ST    L  C H   ++ G      +  + G          +I M
Sbjct: 530 -----------RPDDSTFLSVLVGCNHAGLVKEGETFFRQMTDRYGLTPTPSHYACMIDM 578

Query: 500 YAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
             + GR   A  + ++   +P DV+ W +L+A   ++ N  +  KL  + +ME    D  
Sbjct: 579 LGRNGRFAEALRMIENMPFEP-DVLIWKTLLASCKLHRN-LDIGKLAADKLMELSERDSA 636

Query: 558 TFI 560
           +++
Sbjct: 637 SYV 639



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 88/404 (21%), Positives = 164/404 (40%), Gaps = 89/404 (22%)

Query: 5   LKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND 64
           LK +G++   V+     I    + G    A  +F  +  KN V++ SM+    ++GR++D
Sbjct: 260 LKVMGSQS--VYASTALIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQLCIRDGRLDD 317

Query: 65  ARKLFEQM------P--------------------------QRNLVS----WNSMIAGYL 88
           A ++F +M      P                          +R+L++     N++++ Y 
Sbjct: 318 ALRVFSEMISEGVQPNEFAFSIALSACGSVCLGRQIHCSAIKRDLMTDIRVSNALLSMYG 377

Query: 89  HNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL------------------ 130
            +  V E   +  K+  PDL SW   I+   + G  EKA  L                  
Sbjct: 378 RSGFVSELEAVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSS 437

Query: 131 -------FDLLPNKEDTACW-------------NAMVAGYAKIGNYNEAKKLLDAMPSKN 170
                    LL       C              NA++  Y+K G    A+   D M + +
Sbjct: 438 GLSSCADLALLHQGRQLHCLALKLGCDFKVCTGNALINMYSKCGRIGSARLAFDVMDTHD 497

Query: 171 IVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQ 226
           ++SWNS++ G  ++G+ +LA + F  M       D  ++  +L G      +     FF+
Sbjct: 498 VMSWNSLIHGLAQHGDANLALETFSEMCSSDWRPDDSTFLSVLVGCNHAGLVKEGETFFR 557

Query: 227 KIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI 280
           ++ ++  ++     +  M+    RNGR  EA R+ + MP   +V+ W  ++A+      +
Sbjct: 558 QMTDRYGLTPTPSHYACMIDMLGRNGRFAEALRMIENMPFEPDVLIWKTLLASCKLHRNL 617

Query: 281 E---EAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           +    AA   +E+ ER+  S+  M + Y    +  +A R+  +M
Sbjct: 618 DIGKLAADKLMELSERDSASYVLMSNLYAMHEEWRDAERVRRRM 661



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 101/202 (50%), Gaps = 20/202 (9%)

Query: 48  TYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM---- 103
           T N++I+ Y+K GR+  AR  F+ M   +++SWNS+I G   +     A E F +M    
Sbjct: 469 TGNALINMYSKCGRIGSARLAFDVMDTHDVMSWNSLIHGLAQHGDANLALETFSEMCSSD 528

Query: 104 FRPDLFSW-ALMITC----YTRKGE--LEKARELFDLLPNKEDTACWNAMVAGYAKIGNY 156
           +RPD  ++ ++++ C      ++GE    +  + + L P     AC   M+    + G +
Sbjct: 529 WRPDDSTFLSVLVGCNHAGLVKEGETFFRQMTDRYGLTPTPSHYAC---MIDMLGRNGRF 585

Query: 157 NEAKKLLDAMP-SKNIVSWNSMLSGYTKNGEMHL----ASKFFEAMEERDVVSWNLMLDG 211
            EA ++++ MP   +++ W ++L+    +  + +    A K  E + ERD  S+ LM + 
Sbjct: 586 AEALRMIENMPFEPDVLIWKTLLASCKLHRNLDIGKLAADKLME-LSERDSASYVLMSNL 644

Query: 212 YVELDDLDSAWKFFQKIPEQNV 233
           Y   ++   A +  +++ E  V
Sbjct: 645 YAMHEEWRDAERVRRRMDEIGV 666


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 196/631 (31%), Positives = 326/631 (51%), Gaps = 64/631 (10%)

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM- 197
           D  C N ++  Y K+G    A++L D MP +N+VS+ +++  + + G+   A+  F  + 
Sbjct: 95  DLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLR 154

Query: 198 -EERDVVSWNL--MLDGYVELDDL-------DSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
            E  +V  + L  ML   + +D           AWK      + N      ++  Y+   
Sbjct: 155 WEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGH---DHNAFVGSGLIDAYSLCS 211

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTT--- 300
            + +A  +F+ +  ++ V W AM++ Y +    E A R+F +M     + NP + T+   
Sbjct: 212 LVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLK 271

Query: 301 --------------------------------MIDGYVRIAKLDEARRLLDQMPYKNIAA 328
                                           ++D Y +   + +AR   + +PY ++  
Sbjct: 272 AAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVIL 331

Query: 329 QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ-CGRMDEAINLFRQMVN-- 385
            + MIS Y Q+ + ++A ++F ++    V+     +    Q C  M + ++  +Q+ N  
Sbjct: 332 LSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQ-LDFGKQIHNHA 390

Query: 386 ------KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDA 439
                  D+   N ++  YA+   MD ++KIF  + +  N VSWN ++ GF Q+    +A
Sbjct: 391 IKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSL-RDANEVSWNTIVVGFSQSGLGEEA 449

Query: 440 LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
           L +F  M          T +  L ACA  A+++   QIH    KS + ND  +GNSLI  
Sbjct: 450 LSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDT 509

Query: 500 YAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTF 559
           YAKCG I++A  +F+     D+ISWN++I+GYA++G A +A++LF+ M    V  + +TF
Sbjct: 510 YAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITF 569

Query: 560 IGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMK 619
           + +LS CS  GLV+ GL LF+ M   + I+P +EHY C++ LL RAGRL++A + +  + 
Sbjct: 570 VALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIP 629

Query: 620 IKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEK 679
             P+A +W  LL +C +H+N+ LGR + EK+ E+EPQ  + Y LLSNM+A AG  D+V  
Sbjct: 630 SAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVAL 689

Query: 680 VRVSMEGSGAQKQPGCSWIEVKNQIHTFLSG 710
           +R SM   G +K PG SW+E+K +IH F  G
Sbjct: 690 LRKSMRNIGVRKVPGLSWVEIKGEIHAFSVG 720



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 121/578 (20%), Positives = 246/578 (42%), Gaps = 72/578 (12%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           N +++ Y K G +  AR+LF++MP+RN+VS+ +++  +      + A  LF ++      
Sbjct: 100 NVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHE 159

Query: 106 PDLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNEAKKL 162
            + F    M+           A  +      L +  +    + ++  Y+     ++A+ +
Sbjct: 160 VNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHV 219

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDL 218
            + +  K+ V W +M+S Y++N     A + F  M     + +  +   +L   V L  +
Sbjct: 220 FNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSV 279

Query: 219 -------DSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
                    A K      E +V     +L  YA+ G + +AR  F+ +P  +V+  + MI
Sbjct: 280 VLGKGIHGCAIKTLNDT-EPHVGG--ALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMI 336

Query: 272 AAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQM----PY 323
           + Y Q  Q E+A  LF+ +       N  S ++++     + +LD  +++ +        
Sbjct: 337 SRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHE 396

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
            ++    A++  Y +   MD + +IF  +   + V WN ++ G++Q G  +EA+++F +M
Sbjct: 397 SDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEM 456

Query: 384 ---------------------------------------VNKDIVTWNTMIAGYAQIRQM 404
                                                   N D V  N++I  YA+   +
Sbjct: 457 QAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYI 516

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSA 464
            DA+K+F+ +   R+ +SWNA+ISG+  +    DAL++F  M +   +++  T    LS 
Sbjct: 517 RDALKVFQHL-MERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSV 575

Query: 465 CAHLAALQLGRQIH-HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV-DVI 522
           C+    +  G  +   + I  G    +     ++ +  + GR+ +A     D       +
Sbjct: 576 CSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAM 635

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
            W +L++   I+ N     +   E ++E    D  T++
Sbjct: 636 VWRALLSSCIIHKNVALG-RFSAEKILEIEPQDETTYV 672



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/450 (20%), Positives = 202/450 (44%), Gaps = 69/450 (15%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           N    + +I AY+    V+DA  +F  + +++ V W +M++ Y  ND  + A  +F KM 
Sbjct: 196 NAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMR 255

Query: 104 ---FRPDLFSW-----------------------------------ALMITCYTRKGELE 125
               +P+ F+                                      ++  Y + G+++
Sbjct: 256 VSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIK 315

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK-----KLLDAMPSKNIVSWNSMLSG 180
            AR  F+++P  +D    + M++ YA+  N NE       +L+ +    N  S +S+L  
Sbjct: 316 DARLAFEMIP-YDDVILLSFMISRYAQ-SNQNEQAFELFLRLMRSSVLPNEYSLSSVLQA 373

Query: 181 YTKNGEMHLASKF----FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSW 236
            T   ++    +      +   E D+   N ++D Y + +D+DS+ K F  + + N VSW
Sbjct: 374 CTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSW 433

Query: 237 VTMLSGYARNGRMLEARRLF-----DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
            T++ G++++G   EA  +F      QMP   V  +++++ A      I  A ++   + 
Sbjct: 434 NTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVT-YSSVLRACASTASIRHAGQIHCSIE 492

Query: 292 E----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347
           +     + V   ++ID Y +   + +A ++   +  ++I +  A+ISGY  + +  +A +
Sbjct: 493 KSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALE 552

Query: 348 IFDKIGTHDV----VCWNVMIKGYAQCGRMDEAINLFRQM-----VNKDIVTWNTMIAGY 398
           +FD++   +V    + +  ++   +  G ++  ++LF  M     +   +  +  ++   
Sbjct: 553 LFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLL 612

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
            +  +++DA++   ++    + + W AL+S
Sbjct: 613 GRAGRLNDALQFIGDIPSAPSAMVWRALLS 642



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 180/395 (45%), Gaps = 61/395 (15%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----P 106
           +++  YAK G + DAR  FE +P  +++  + MI+ Y  +++ ++A ELF ++ R    P
Sbjct: 303 ALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLP 362

Query: 107 DLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           + +S + ++   T   +L+  +++ +    + ++ D    NA++  YAK  + + + K+ 
Sbjct: 363 NEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIF 422

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME------------------------- 198
            ++   N VSWN+++ G++++G    A   F  M+                         
Sbjct: 423 SSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIR 482

Query: 199 --------------ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYA 244
                           D V  N ++D Y +   +  A K FQ + E++++SW  ++SGYA
Sbjct: 483 HAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYA 542

Query: 245 RNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS--- 297
            +G+  +A  LFD+M   NV    + + A+++     G +     LF  M   + +    
Sbjct: 543 LHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSM 602

Query: 298 --WTTMIDGYVRIAKLDEARRLLDQMPYKNIA-AQTAMISGYVQNKRMD----EANQIFD 350
             +T ++    R  +L++A + +  +P    A    A++S  + +K +      A +I +
Sbjct: 603 EHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILE 662

Query: 351 KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
            I   D   + ++   YA  G +D+   L + M N
Sbjct: 663 -IEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRN 696



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 116/268 (43%), Gaps = 38/268 (14%)

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIF 411
           +G  D+ C NV++  Y + G +  A  LF +M  +++V++ T++  +AQ    + A  +F
Sbjct: 91  VGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALF 150

Query: 412 EEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAAL 471
             +        W                         EG + +   L   L     + A 
Sbjct: 151 RRL-------RW-------------------------EGHEVNQFVLTTMLKLAIAMDAA 178

Query: 472 QLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGY 531
            L   +H  A K G+ ++ FVG+ LI  Y+ C  + +AE +F      D + W ++++ Y
Sbjct: 179 GLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCY 238

Query: 532 AINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC-MTEVYAIEP 590
           + N     A ++F +M + G  P+P     VL A   +  V  G  +  C +  +   EP
Sbjct: 239 SENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEP 298

Query: 591 LVEHYACMIDLLSRAGRLDE---AFEMV 615
            V     ++D+ ++ G + +   AFEM+
Sbjct: 299 HVG--GALLDMYAKCGDIKDARLAFEMI 324



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 99/191 (51%), Gaps = 20/191 (10%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           +TV  NS+I  YAK G + DA K+F+ + +R+++SWN++I+GY  + +  +A ELFD+M 
Sbjct: 499 DTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMN 558

Query: 105 RPDL----FSWALMITCYTRKGELEKARELFDLL-------PNKEDTACWNAMVAGYAKI 153
           + ++     ++  +++  +  G +     LFD +       P+ E   C   +V    + 
Sbjct: 559 KSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTC---IVRLLGRA 615

Query: 154 GNYNEAKKLLDAMPS-KNIVSWNSMLSGYTKNGEMHL----ASKFFEAMEERDVVSWNLM 208
           G  N+A + +  +PS  + + W ++LS    +  + L    A K  E +E +D  ++ L+
Sbjct: 616 GRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILE-IEPQDETTYVLL 674

Query: 209 LDGYVELDDLD 219
            + Y     LD
Sbjct: 675 SNMYAAAGSLD 685



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 81/163 (49%), Gaps = 15/163 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  I    K G + +A+K+F  + +++ +++N++IS YA +G+  DA +LF++M + N+ 
Sbjct: 504 NSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVE 563

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARE 129
              +++ ++++       V     LFD M      +P +  +  ++    R G L  A +
Sbjct: 564 SNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQ 623

Query: 130 LFDLLPNKEDTACWNAMVAGY-----AKIGNYNEAKKLLDAMP 167
               +P+      W A+++         +G ++ A+K+L+  P
Sbjct: 624 FIGDIPSAPSAMVWRALLSSCIIHKNVALGRFS-AEKILEIEP 665


>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
          Length = 1113

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 208/682 (30%), Positives = 347/682 (50%), Gaps = 78/682 (11%)

Query: 120 RKGELEKAREL-FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM---PSKNIVSWN 175
           R G+L  AR + FD+ P   D+  +N++++ Y+K G+  +A+ + + M     +++VSW+
Sbjct: 79  RLGKLVHARLIEFDIEP---DSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWS 135

Query: 176 SMLSGYTKNG-EMHLASKFFEAMEE-------------RDVVSWNLMLDGYVELDDLDSA 221
           +M++ Y  NG E+     F E +E              R   + + +  G V L  L   
Sbjct: 136 AMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKT 195

Query: 222 WKFFQKIPEQNVVSWVTMLSGYARNGRMLE-ARRLFDQMPIRNVVAWNAMIAAYVQRGQI 280
             F     E +V    +++  + +     E A ++FD+M   NVV W  MI   +Q G  
Sbjct: 196 GHF-----ESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFP 250

Query: 281 EEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA--AQTAMIS 334
            EA R F++M     E +  + +++      +  L   ++L        +    + +++ 
Sbjct: 251 REAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVD 310

Query: 335 GYVQ---NKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ-CGRMDEAINLFRQMVNKDIV- 389
            Y +   +  +D+  ++FD++  H V+ W  +I GY + C    EAINLF +M+ +  V 
Sbjct: 311 MYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVE 370

Query: 390 ---------------------------------------TWNTMIAGYAQIRQMDDAVKI 410
                                                    N++I+ + +  +M+DA + 
Sbjct: 371 PNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRA 430

Query: 411 FEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAA 470
           FE + ++ N VS+N  + G  +N     A K+   +T+        T A  LS  A++ +
Sbjct: 431 FESLSEK-NLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGS 489

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
           ++ G QIH   +K G   +  V N+LI+MY+KCG I  A  +F   +  +VISW S+I G
Sbjct: 490 IRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITG 549

Query: 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP 590
           +A +G A   ++ F +M+ EGV P+ VT++ +LSACSHVGLV  G + F  M E + I+P
Sbjct: 550 FAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKP 609

Query: 591 LVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL 650
            +EHYACM+DLL RAG L +AFE +  M  + +  +W T LGACR+H N +LG++A  K+
Sbjct: 610 KMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKI 669

Query: 651 SELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSG 710
            EL+P + + Y  LSN++A AG+W+E  ++R  M+     K+ GCSWIEV ++IH F  G
Sbjct: 670 LELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVG 729

Query: 711 DPKQCRTAEICNTLKTLAAQIR 732
           D       +I + L  L  +I+
Sbjct: 730 DTAHPNAHQIYDELDRLITEIK 751



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 130/591 (21%), Positives = 263/591 (44%), Gaps = 76/591 (12%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQM---PQRNLVSWNSMIAGYLHN----DKVKE 95
           + ++V YNS+IS Y+K+G    A  +FE M    +R++VSW++M+A Y +N    D +K 
Sbjct: 94  EPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKV 153

Query: 96  ARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN----KEDTACWNAMVAGYA 151
             E  +    P+ + +  +I   +    +   R     L      + D     +++  + 
Sbjct: 154 FVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFV 213

Query: 152 KIGN-YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWN 206
           K  N +  A K+ D M   N+V+W  M++   + G    A +FF  M     E D  + +
Sbjct: 214 KGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLS 273

Query: 207 LMLDGYVELDDLD-----SAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
            +     EL++L       +W     + +    S V M +  + +G + + R++FD+M  
Sbjct: 274 SVFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMED 333

Query: 262 RNVVAWNAMIAAYVQRGQI-EEAARLFIEM-----PERNPVSWTTMIDGYVRIAKLDEAR 315
            +V++W A+I  Y++   +  EA  LF EM      E N  ++++       ++     +
Sbjct: 334 HSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGK 393

Query: 316 RLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
           ++L Q   + +A+ +    ++IS +V++ RM++A + F+ +   ++V +N  + G  +  
Sbjct: 394 QVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNL 453

Query: 372 RMDEAINLFRQMVNKDI---------------------------------------VTWN 392
             ++A  L  ++  +++                                          N
Sbjct: 454 NFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCN 513

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
            +I+ Y++   +D A ++F  M + RN +SW ++I+GF ++ F +  L+ F  M +EG K
Sbjct: 514 ALISMYSKCGSIDTASRVFNFM-ENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVK 572

Query: 453 ADHSTLACALSACAHLAALQLG-RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL 511
            +  T    LSAC+H+  +  G R  + +         +     ++ +  + G + +A  
Sbjct: 573 PNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDA-F 631

Query: 512 LFKDADP--VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
            F +  P   DV+ W + +    ++ N TE  KL    ++E    +P  +I
Sbjct: 632 EFINTMPFQADVLVWRTFLGACRVHSN-TELGKLAARKILELDPNEPAAYI 681



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 163/345 (47%), Gaps = 31/345 (8%)

Query: 38  FSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEAR 97
           F +    N+   NS+IS + K+ R+ DA++ FE + ++NLVS+N+ + G   N   ++A 
Sbjct: 400 FKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAF 459

Query: 98  ELFDKMFRPDL----FSWALMITCYTRKGELEKARELFDLLPNKEDTAC----WNAMVAG 149
           +L  ++   +L    F++A +++     G + K  ++   +  K   +C     NA+++ 
Sbjct: 460 KLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVV-KLGLSCNQPVCNALISM 518

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSW 205
           Y+K G+ + A ++ + M ++N++SW SM++G+ K+G      + F  M E  V    V++
Sbjct: 519 YSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTY 578

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMP 260
             +L     +  +   W+ F  + E + +      +  M+    R G + +A    + MP
Sbjct: 579 VAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMP 638

Query: 261 IR-NVVAWNAMIAAYVQRGQIE---EAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
            + +V+ W   + A       E    AAR  +E+    P ++  + + Y    K +E+  
Sbjct: 639 FQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTE 698

Query: 317 LLDQMPYKNIAAQTA---------MISGYVQNKRMDEANQIFDKI 352
           +  +M  +N+  +           +   YV +     A+QI+D++
Sbjct: 699 MRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDEL 743



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 6/201 (2%)

Query: 439 ALKIFVLMTQEG-KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
           A+    LM ++G +  D  T +  L +C      +LG+ +H   I+     D  + NSLI
Sbjct: 45  AVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLI 104

Query: 498 TMYAKCGRIQNAELLFKDADPV---DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP 554
           ++Y+K G    AE +F+        DV+SW++++A Y  NG   +AIK+F E +  G+ P
Sbjct: 105 SLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVP 164

Query: 555 DPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRA-GRLDEAFE 613
           +   +  V+ ACS+   V  G      + +    E  V     +ID+  +     + A++
Sbjct: 165 NDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYK 224

Query: 614 MVKGMKIKPNAGIWGTLLGAC 634
           +   M  + N   W  ++  C
Sbjct: 225 VFDKMS-ELNVVTWTLMITRC 244


>gi|125525985|gb|EAY74099.1| hypothetical protein OsI_01984 [Oryza sativa Indica Group]
          Length = 735

 Score =  330 bits (845), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 202/634 (31%), Positives = 325/634 (51%), Gaps = 60/634 (9%)

Query: 159 AKKLLDAMP--SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS-------WNLML 209
           A  + D +P  ++++ SWNS+L+  +++  +   S+F   +    V+             
Sbjct: 68  AFAVFDDIPPAARDVASWNSLLNPLSRHRPLDALSRFRSMLSSSTVLPSPHSFAAAFTAA 127

Query: 210 DGYVELDDLDSAWKFFQKIPE--QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
                     +A     KIP    NV    ++L+ Y + G + +ARR+FD MP RN  +W
Sbjct: 128 ARAASAPAGTAAHALACKIPSAVSNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSW 187

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI- 326
           + M+A Y      EEA  LF  M E  P   +  +   V  A       L+ +  +  I 
Sbjct: 188 STMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIV 247

Query: 327 --------AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
                   + + ++++ Y +   M  A  +F+     + + W+ MI GYAQ G  D A++
Sbjct: 248 KDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVS 307

Query: 379 LFRQM--------------------------VNKD-------------IVTWNTMIAGYA 399
           +F QM                          V K              I   + ++  YA
Sbjct: 308 MFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYA 367

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
           +   + DA + F+++    + V W A++SG +QN  H +AL ++  M +EG     ST+A
Sbjct: 368 KCGCIADAKEGFDQL-YEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIA 426

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
             L ACA +AAL+ G+Q+H   +K G      VG++L TMY+KCG +++   +F+     
Sbjct: 427 SGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDR 486

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
           DVI+WNS+I+G++ NG    A+ LFEEM MEG  PD +TFI +L ACSH+GLVD G + F
Sbjct: 487 DVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYF 546

Query: 580 ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
             MT+ Y + P ++HYACM+D+LSRAG L EA + ++ + I     +W  +LGACR  ++
Sbjct: 547 SLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRD 606

Query: 640 IKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
             +G  A E+L EL  + +S Y LLSN++A   +W++VE+VR  M   G  K PGCSW+E
Sbjct: 607 FDVGAYAGERLMELGTRDSSAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVE 666

Query: 700 VKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           + +++H F+ G+ +      I   L+ LA  +++
Sbjct: 667 LNSRVHVFVVGEQQHPEAENINAQLRRLAKHMKD 700



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 107/412 (25%), Positives = 195/412 (47%), Gaps = 32/412 (7%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKV 93
           A KI S +S  N     S+++ Y K G V+DAR++F+ MPQRN  SW++M+AGY      
Sbjct: 143 ACKIPSAVS--NVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCS 200

Query: 94  KEARELFDKMF------RPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWN 144
           +EA +LF  M       + +  + A++       G L    ++  L+      +  +  N
Sbjct: 201 EEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLG-LLMGEQMHGLIVKDGLLDFVSVEN 259

Query: 145 AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS 204
           ++V  YAK G    A  + ++   +N ++W++M++GY +NGE   A   F  M       
Sbjct: 260 SLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTP 319

Query: 205 WNLMLDGYVEL-DDLDS------AWKFFQKIP-EQNVVSWVTMLSGYARNGRMLEARRLF 256
                 G +    DL +      A     K+  E  +     ++  YA+ G + +A+  F
Sbjct: 320 TEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGF 379

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVR----IAKLD 312
           DQ+   ++V W AM++ +VQ G+ EEA  L+  M +   +   + I   +R    IA L+
Sbjct: 380 DQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALE 439

Query: 313 EARRLLDQMPYKNIA----AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
             ++L  Q+    +       +A+ + Y +   +++   +F +I   DV+ WN +I G++
Sbjct: 440 PGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFS 499

Query: 369 QCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
           Q G  + A++LF +M       D +T+  ++   + +  +D   + F  M K
Sbjct: 500 QNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTK 551



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 152/339 (44%), Gaps = 38/339 (11%)

Query: 14  YVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP 73
           +V  +N  +T   K+G +  A  +F    ++N++T+++MI+ YA+NG  + A  +F QM 
Sbjct: 254 FVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMH 313

Query: 74  QRNLVSWNSMIAGYLHNDK-------VKEARELFDKM-FRPDLFSWALMITCYTRKGELE 125
                       G L+           K+A  L  K+ F   ++  + ++  Y + G + 
Sbjct: 314 AAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIA 373

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
            A+E FD L  + D   W AMV+G+ + G + EA  L   M  + I+   S ++   +  
Sbjct: 374 DAKEGFDQL-YEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLR-- 430

Query: 186 EMHLASKFFEAME-----ERDVVSWNLMLDG---------YVELDDLDSAWKFFQKIPEQ 231
               A     A+E        +V + L L           Y +  +L+     F++IP++
Sbjct: 431 ----ACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDR 486

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNA----MIAAYVQRGQIEEAARLF 287
           +V++W +++SG+++NG    A  LF++M +   +  N     ++ A    G ++     F
Sbjct: 487 DVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYF 546

Query: 288 IEMPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQM 321
             M +   ++     +  M+D   R   L EA+  ++ +
Sbjct: 547 SLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESI 585



 Score = 42.4 bits (98), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR--IQNAELLFKDADPV--DVISWNSLIA 529
           G  +H  A+KSG  +   V NSLI  Y+   R  +  A  +F D  P   DV SWNSL+ 
Sbjct: 31  GEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVASWNSLLN 90

Query: 530 GYAINGNATEAIKLFEEMVMEG-VAPDPVTF 559
             + +    +A+  F  M+    V P P +F
Sbjct: 91  PLSRH-RPLDALSRFRSMLSSSTVLPSPHSF 120


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 200/611 (32%), Positives = 319/611 (52%), Gaps = 56/611 (9%)

Query: 177 MLSGYTKNGEMHLASKFFEAMEERDV--VSWNL--MLDGYVELDDLDSAWKFFQKIPEQ- 231
           ML GY K+  +  A  FF  M+   V  V +N   +L    +  DL    +    +    
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 232 ---NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFI 288
              N+ +   +++ YA+  ++ +A  +FD+MP R++V WN MI+ Y Q G  + A  L +
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 289 EMPE--RNPVSWT-------------------------------------TMIDGYVRIA 309
            M E    P S T                                      ++D Y +  
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180

Query: 310 KLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY-- 367
            +  AR + D M ++ + +  +MI GYVQ+   + A  IF K+    V   NV + G   
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALH 240

Query: 368 --AQCGRMDEAI---NLFRQM-VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
             A  G ++       L  Q+ ++ D+   N++I+ Y++ +++D A  IF+ + + +  V
Sbjct: 241 ACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNL-RNKTLV 299

Query: 422 SWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLA 481
           SWNA+I G+ QN    +AL  F  M     K D  T+   + A A L+  +  + IH L 
Sbjct: 300 SWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLV 359

Query: 482 IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
           I+     ++FV  +L+ MYAKCG I  A  LF   +   VI+WN++I GY  +G    ++
Sbjct: 360 IRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSV 419

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601
           +LF+EM    + P+ +TF+  LSACSH GLV+ GL  FE M + Y IEP ++HY  M+DL
Sbjct: 420 ELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDL 479

Query: 602 LSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCY 661
           L RAGRL++A++ ++ M IKP   ++G +LGAC++H+N+ LG  A  ++ +L P     +
Sbjct: 480 LGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYH 539

Query: 662 ALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEIC 721
            LL+N++A A  W +V KVR  ME SG QK PGCS +E+ N++H+F SG     ++ +I 
Sbjct: 540 VLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIY 599

Query: 722 NTLKTLAAQIR 732
           + L+TL  +IR
Sbjct: 600 SYLETLVDEIR 610



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 117/404 (28%), Positives = 199/404 (49%), Gaps = 37/404 (9%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           N      +++ YAK  ++NDA  +F++MP+R+LV WN+MI+GY  N   K A  L  +M 
Sbjct: 64  NLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMS 123

Query: 104 ---FRPDLFSWALMITCY--TRKGELEKARELFDLLPNKEDTA-CWNAMVAGYAKIGNYN 157
               RPD  +   ++     TR   +  A   + L    E       A+V  Y+K G+ +
Sbjct: 124 EEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVS 183

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV---- 213
            A+ + D M  + +VSWNSM+ GY ++G+   A   F+ M +  V   N+ + G +    
Sbjct: 184 IARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACA 243

Query: 214 ELDDLDSAWKFFQKIPEQ-----NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN 268
           +L DL+   KF  K+ +Q     +V    +++S Y++  R+  A  +F  +  + +V+WN
Sbjct: 244 DLGDLERG-KFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWN 302

Query: 269 AMIAAYVQRGQIEEAARLFIEMPERN--PVSWT--TMIDGYVRIAKLDEA--------RR 316
           AMI  Y Q G + EA   F EM  RN  P S+T  ++I     ++   +A        RR
Sbjct: 303 AMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRR 362

Query: 317 LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
            LD    KN+   TA++  Y +   +  A ++FD +    V+ WN MI GY   G    +
Sbjct: 363 FLD----KNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTS 418

Query: 377 INLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
           + LF++M    +  + +T+   ++  +    +++ +  FE M K
Sbjct: 419 VELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKK 462



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 120/486 (24%), Positives = 207/486 (42%), Gaps = 96/486 (19%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNL--VSWNSMIAGYL--HNDKVKEARELFDKM---- 103
           M+  YAK+  ++ A   F +M   ++  V +N      L   N  +K  +E+   +    
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           F  +LF+   ++  Y +  ++  A  +FD +P + D  CWN M++GYA+ G    A  L+
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPER-DLVCWNTMISGYAQNGFAKVALMLV 119

Query: 164 DAMP-------SKNIVSW--------------------------------NSMLSGYTKN 184
             M        S  IVS                                  +++  Y+K 
Sbjct: 120 LRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKC 179

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTML 240
           G + +A   F+ M+ R VVSWN M+DGYV+  D + A   FQK+ ++ V    V+ +  L
Sbjct: 180 GSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGAL 239

Query: 241 SGYARNGRMLEAR---RLFDQMPI-RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
              A  G +   +   +L DQ+ +  +V   N++I+ Y +  +++ AA +F  +  +  V
Sbjct: 240 HACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLV 299

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT-AMISGYVQNKRMDEANQ-------I 348
           SW  MI GY +   ++EA     +M  +NI   +  M+S       +    Q       +
Sbjct: 300 SWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLV 359

Query: 349 FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAV 408
             +    +V     ++  YA+CG +  A  LF  M  + ++TWN MI GY        +V
Sbjct: 360 IRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSV 419

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
           ++F+EM  ++ T+  N +                              T  CALSAC+H 
Sbjct: 420 ELFKEM--KKGTIKPNDI------------------------------TFLCALSACSHS 447

Query: 469 AALQLG 474
             ++ G
Sbjct: 448 GLVEEG 453



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 18/228 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  I+   K  RV+ A  IF  +  K  V++N+MI  YA+NG VN+A   F +M  RN+ 
Sbjct: 271 NSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIK 330

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAREL 130
               +  S+I         ++A+ +   + R     ++F    ++  Y + G +  AR+L
Sbjct: 331 PDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKL 390

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGE 186
           FD++ N      WNAM+ GY   G    + +L   M    I    +++   LS  + +G 
Sbjct: 391 FDMM-NARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGL 449

Query: 187 MHLASKFFEAME-----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP 229
           +     FFE+M+     E  +  +  M+D       L+ AW F QK+P
Sbjct: 450 VEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMP 497



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 13/167 (7%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           +  +   KN     +++  YAK G ++ ARKLF+ M  R++++WN+MI GY  +   K +
Sbjct: 359 VIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTS 418

Query: 97  RELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTAC------WNAM 146
            ELF +M     +P+  ++   ++  +  G +E+    F+ +  K+D         + AM
Sbjct: 419 VELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESM--KKDYGIEPTMDHYGAM 476

Query: 147 VAGYAKIGNYNEAKKLLDAMPSK-NIVSWNSMLSGYTKNGEMHLASK 192
           V    + G  N+A   +  MP K  I  + +ML     +  + L  K
Sbjct: 477 VDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEK 523



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 10/148 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP- 73
           VF     +    K G +  A K+F  M+ ++ +T+N+MI  Y  +G    + +LF++M  
Sbjct: 368 VFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKK 427

Query: 74  ---QRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELE 125
              + N +++   ++   H+  V+E    F+ M       P +  +  M+    R G L 
Sbjct: 428 GTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLN 487

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKI 153
           +A +    +P K     + AM+ G  KI
Sbjct: 488 QAWDFIQKMPIKPGITVYGAML-GACKI 514


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 195/615 (31%), Positives = 326/615 (53%), Gaps = 28/615 (4%)

Query: 121 KGELEKARELFDLLP-NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLS 179
           +G   +AR LFD +P  + +   WN++++ YAK G   +A  +   MP ++ VSW  M+ 
Sbjct: 261 RGCFREARCLFDDIPYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIV 320

Query: 180 GYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE----LDDLDSAWKFFQKIPEQNVVS 235
           G  ++G    A K F  M           L   +     ++      K    + +  + S
Sbjct: 321 GLNRSGRFWDAVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSS 380

Query: 236 WV----TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
            V    ++L  Y + G    AR +F++M +R+V +WN M++ Y  +G++E A  +F  M 
Sbjct: 381 CVPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMV 440

Query: 292 ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY-----KNIAAQTAMISGYVQNKRMDEAN 346
           ER+ VSW T+I GY +      A +   +M        +    T+++S     + +    
Sbjct: 441 ERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGK 500

Query: 347 QIFDKIGTHDVVC----WNVMIKGYAQCGRMDEAINLFRQMVNKD--IVTWNTMIAGYAQ 400
           Q+   I    + C     N +I  YA+ G ++ A  +  Q V  D  ++++  ++ GY +
Sbjct: 501 QMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVK 560

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
           +     A +IF+ M  R + ++W A+I G+ QN  + +A+++F  M   G + +  TLA 
Sbjct: 561 LGDTKQAREIFDIMNNR-DVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAA 619

Query: 461 ALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV- 519
            LSACA LA L  G+QIH  AI+S     + V N++IT+YA+ G +  A  +F   D + 
Sbjct: 620 VLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVF---DQIC 676

Query: 520 ---DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGL 576
              + I+W S+I   A +G   +A+ LFEEMV  GV PD +T++GVLSAC+H G VD G 
Sbjct: 677 WRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGK 736

Query: 577 KLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRM 636
           + +E M   + I P + HYACM+DL +RAG L EA E ++ M + P+  +WG+LL ACR+
Sbjct: 737 RYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRV 796

Query: 637 HQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCS 696
            +N  L  +A  KL  ++P  +  Y+ L+N+++  GRW++  ++    +  G +K+ G S
Sbjct: 797 RKNADLAELAAGKLLSIDPHNSGAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFS 856

Query: 697 WIEVKNQIHTFLSGD 711
           W  V+ ++H F + D
Sbjct: 857 WTHVRGKVHVFGADD 871



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 150/544 (27%), Positives = 272/544 (50%), Gaps = 40/544 (7%)

Query: 29  GRVEEAIKIFSQM--SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           G   EA  +F  +  +++N  T+NS++S YAK+GR+ DA  +F +MP R+ VSW  MI G
Sbjct: 262 GCFREARCLFDDIPYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVG 321

Query: 87  YLHN----DKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTAC 142
              +    D VK   ++  + F P  F+   +++           R++   +     ++C
Sbjct: 322 LNRSGRFWDAVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSC 381

Query: 143 ---WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE 199
               N+++  Y K G+   A+ + + M  +++ SWN M+S YT  G M LA   FE M E
Sbjct: 382 VPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVE 441

Query: 200 RDVVSWNLMLDGYVELDDLDS-AWKFFQKI-----PEQNVVSWVTMLSGYA-----RNGR 248
           R +VSWN ++ GY + + LD  A KFF ++      E +  +  ++LS  A     + G+
Sbjct: 442 RSIVSWNTIIAGYNQ-NGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGK 500

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIE--MPERNPVSWTTMIDGYV 306
            + +  L   MP  + +  NA+I+ Y + G +E A R+  +  + + N +S+T +++GYV
Sbjct: 501 QMHSYILRTGMPCSSQIM-NALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYV 559

Query: 307 RIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI-------GTHDVVC 359
           ++    +AR + D M  +++ A TAMI GY QN + DEA ++F  +        +H +  
Sbjct: 560 KLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLA- 618

Query: 360 WNVMIKGYAQCGRMDEAINL----FRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMG 415
              ++   A    +D    +     R +  + +   N +I  YA+   +  A ++F+++ 
Sbjct: 619 --AVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQIC 676

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
            R+ T++W ++I    Q+     A+ +F  M + G K DH T    LSACAH   +  G+
Sbjct: 677 WRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGK 736

Query: 476 QIH-HLAIKSGYVNDLFVGNSLITMYAKCGRIQNA-ELLFKDADPVDVISWNSLIAGYAI 533
           + +  +  + G V  +     ++ ++A+ G +  A E + +     D + W SL+A   +
Sbjct: 737 RYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRV 796

Query: 534 NGNA 537
             NA
Sbjct: 797 RKNA 800



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 122/496 (24%), Positives = 219/496 (44%), Gaps = 89/496 (17%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +   GK G  E A  +F +M  ++  ++N M+S Y   GR+  A  +FE M +R++V
Sbjct: 386 NSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIV 445

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMF-----RPDLFSWALMITCYTRKGELEKARELFDL 133
           SWN++IAGY  N     A + F +M       PD F+   +++       L+  +++   
Sbjct: 446 SWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSY 505

Query: 134 LPNKE---DTACWNAMVAGYAKIGNYNEAKKLLD--AMPSKNIVSWNSMLSGYTKNGEMH 188
           +        +   NA+++ YAK G+   A++++D   +   N++S+ ++L GY K G+  
Sbjct: 506 ILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTK 565

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSG-- 242
            A + F+ M  RDV++W  M+ GY +    D A + F+ +    PE N  +   +LS   
Sbjct: 566 QAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACA 625

Query: 243 ---------------------------------YARNGRMLEARRLFDQMPIRN-VVAWN 268
                                            YAR+G +  ARR+FDQ+  R   + W 
Sbjct: 626 SLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWT 685

Query: 269 AMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
           +MI A  Q G  E+A  LF EM     + + +++  ++        +D+ +R  +QM  +
Sbjct: 686 SMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQM--Q 743

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM- 383
           N       +S Y                          M+  +A+ G + EA    ++M 
Sbjct: 744 NEHGIVPQMSHYA------------------------CMVDLHARAGLLTEAHEFIQRMP 779

Query: 384 VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK-----RRNTVSWNALISGFLQNEFHLD 438
           V  D V W +++A   ++R+  D  ++    GK       N+ +++AL + +       D
Sbjct: 780 VAPDTVVWGSLLAA-CRVRKNADLAEL--AAGKLLSIDPHNSGAYSALANVYSACGRWND 836

Query: 439 ALKIFVLMTQEGKKAD 454
           A +I+ L   +G K +
Sbjct: 837 AARIWKLRKDKGVKKE 852



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 37/131 (28%)

Query: 474 GRQIHHLAIKSGYV------NDL-------------------------------FVGNSL 496
           GR IH  A+K+G +      N+L                               F  NSL
Sbjct: 228 GRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFDDIPYARRNAFTWNSL 287

Query: 497 ITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
           +++YAK GR+ +A ++F +    D +SW  +I G   +G   +A+K F +MV EG AP  
Sbjct: 288 LSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQ 347

Query: 557 VTFIGVLSACS 567
            T   VLS+C+
Sbjct: 348 FTLTNVLSSCA 358


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 208/682 (30%), Positives = 347/682 (50%), Gaps = 78/682 (11%)

Query: 120 RKGELEKAREL-FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM---PSKNIVSWN 175
           R G+L  AR + FD+ P   D+  +N++++ Y+K G+  +A+ + + M     +++VSW+
Sbjct: 79  RLGKLVHARLIEFDIEP---DSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWS 135

Query: 176 SMLSGYTKNG-EMHLASKFFEAMEE-------------RDVVSWNLMLDGYVELDDLDSA 221
           +M++ Y  NG E+     F E +E              R   + + +  G V L  L   
Sbjct: 136 AMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKT 195

Query: 222 WKFFQKIPEQNVVSWVTMLSGYARNGRMLE-ARRLFDQMPIRNVVAWNAMIAAYVQRGQI 280
             F     E +V    +++  + +     E A ++FD+M   NVV W  MI   +Q G  
Sbjct: 196 GHF-----ESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFP 250

Query: 281 EEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA--AQTAMIS 334
            EA R F++M     E +  + +++      +  L   ++L        +    + +++ 
Sbjct: 251 REAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVD 310

Query: 335 GYVQ---NKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ-CGRMDEAINLFRQMVNKDIV- 389
            Y +   +  +D+  ++FD++  H V+ W  +I GY + C    EAINLF +M+ +  V 
Sbjct: 311 MYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVE 370

Query: 390 ---------------------------------------TWNTMIAGYAQIRQMDDAVKI 410
                                                    N++I+ + +  +M+DA + 
Sbjct: 371 PNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRA 430

Query: 411 FEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAA 470
           FE + ++ N VS+N  + G  +N     A K+   +T+        T A  LS  A++ +
Sbjct: 431 FESLSEK-NLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGS 489

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
           ++ G QIH   +K G   +  V N+LI+MY+KCG I  A  +F   +  +VISW S+I G
Sbjct: 490 IRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITG 549

Query: 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP 590
           +A +G A   ++ F +M+ EGV P+ VT++ +LSACSHVGLV  G + F  M E + I+P
Sbjct: 550 FAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKP 609

Query: 591 LVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL 650
            +EHYACM+DLL RAG L +AFE +  M  + +  +W T LGACR+H N +LG++A  K+
Sbjct: 610 KMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKI 669

Query: 651 SELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSG 710
            EL+P + + Y  LSN++A AG+W+E  ++R  M+     K+ GCSWIEV ++IH F  G
Sbjct: 670 LELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVG 729

Query: 711 DPKQCRTAEICNTLKTLAAQIR 732
           D       +I + L  L  +I+
Sbjct: 730 DTAHPNAHQIYDELDRLITEIK 751



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 130/591 (21%), Positives = 263/591 (44%), Gaps = 76/591 (12%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQM---PQRNLVSWNSMIAGYLHN----DKVKE 95
           + ++V YNS+IS Y+K+G    A  +FE M    +R++VSW++M+A Y +N    D +K 
Sbjct: 94  EPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKV 153

Query: 96  ARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN----KEDTACWNAMVAGYA 151
             E  +    P+ + +  +I   +    +   R     L      + D     +++  + 
Sbjct: 154 FVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFV 213

Query: 152 KIGN-YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWN 206
           K  N +  A K+ D M   N+V+W  M++   + G    A +FF  M     E D  + +
Sbjct: 214 KGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLS 273

Query: 207 LMLDGYVELDDLD-----SAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
            +     EL++L       +W     + +    S V M +  + +G + + R++FD+M  
Sbjct: 274 SVFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMED 333

Query: 262 RNVVAWNAMIAAYVQRGQI-EEAARLFIEM-----PERNPVSWTTMIDGYVRIAKLDEAR 315
            +V++W A+I  Y++   +  EA  LF EM      E N  ++++       ++     +
Sbjct: 334 HSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGK 393

Query: 316 RLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
           ++L Q   + +A+ +    ++IS +V++ RM++A + F+ +   ++V +N  + G  +  
Sbjct: 394 QVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNL 453

Query: 372 RMDEAINLFRQMVNKDI---------------------------------------VTWN 392
             ++A  L  ++  +++                                          N
Sbjct: 454 NFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCN 513

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
            +I+ Y++   +D A ++F  M + RN +SW ++I+GF ++ F +  L+ F  M +EG K
Sbjct: 514 ALISMYSKCGSIDTASRVFNFM-ENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVK 572

Query: 453 ADHSTLACALSACAHLAALQLG-RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL 511
            +  T    LSAC+H+  +  G R  + +         +     ++ +  + G + +A  
Sbjct: 573 PNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDA-F 631

Query: 512 LFKDADP--VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
            F +  P   DV+ W + +    ++ N TE  KL    ++E    +P  +I
Sbjct: 632 EFINTMPFQADVLVWRTFLGACRVHSN-TELGKLAARKILELDPNEPAAYI 681



 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 163/345 (47%), Gaps = 31/345 (8%)

Query: 38  FSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEAR 97
           F +    N+   NS+IS + K+ R+ DA++ FE + ++NLVS+N+ + G   N   ++A 
Sbjct: 400 FKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAF 459

Query: 98  ELFDKMFRPDL----FSWALMITCYTRKGELEKARELFDLLPNKEDTAC----WNAMVAG 149
           +L  ++   +L    F++A +++     G + K  ++   +  K   +C     NA+++ 
Sbjct: 460 KLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVV-KLGLSCNQPVCNALISM 518

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSW 205
           Y+K G+ + A ++ + M ++N++SW SM++G+ K+G      + F  M E  V    V++
Sbjct: 519 YSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTY 578

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMP 260
             +L     +  +   W+ F  + E + +      +  M+    R G + +A    + MP
Sbjct: 579 VAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMP 638

Query: 261 IR-NVVAWNAMIAAYVQRGQIE---EAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
            + +V+ W   + A       E    AAR  +E+    P ++  + + Y    K +E+  
Sbjct: 639 FQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTE 698

Query: 317 LLDQMPYKNIAAQTA---------MISGYVQNKRMDEANQIFDKI 352
           +  +M  +N+  +           +   YV +     A+QI+D++
Sbjct: 699 MRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDEL 743



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 6/201 (2%)

Query: 439 ALKIFVLMTQEG-KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
           A+    LM ++G +  D  T +  L +C      +LG+ +H   I+     D  + NSLI
Sbjct: 45  AVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLI 104

Query: 498 TMYAKCGRIQNAELLFKDADPV---DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP 554
           ++Y+K G    AE +F+        DV+SW++++A Y  NG   +AIK+F E +  G+ P
Sbjct: 105 SLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVP 164

Query: 555 DPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRA-GRLDEAFE 613
           +   +  V+ ACS+   V  G      + +    E  V     +ID+  +     + A++
Sbjct: 165 NDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYK 224

Query: 614 MVKGMKIKPNAGIWGTLLGAC 634
           +   M  + N   W  ++  C
Sbjct: 225 VFDKMS-ELNVVTWTLMITRC 244


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 186/564 (32%), Positives = 297/564 (52%), Gaps = 51/564 (9%)

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM----PIRNVVAWNA 269
             D L  A   F+   E N++ W TML G A +  ++    ++ +M     + N   +  
Sbjct: 29  HFDGLPYAVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPF 88

Query: 270 MIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           ++ +  +    EE  ++  ++     E +  + T++I  Y R  +L++AR++ D    ++
Sbjct: 89  LLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRD 148

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-- 383
           + + TA+I+GY     +  A ++FD I   DVV WN MI GY +    +EA+ LF++M  
Sbjct: 149 VVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMR 208

Query: 384 ------------------------VNKDIVTW--------------NTMIAGYAQIRQMD 405
                                   + ++I T               N  I  Y++   ++
Sbjct: 209 TNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVE 268

Query: 406 DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465
            A  +FE +  + + VSWN LI G+     + +AL +F  M + G+  +  T+   L AC
Sbjct: 269 IASGLFEGLSCK-DVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPAC 327

Query: 466 AHLAALQLGRQIHHLAIK--SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
           AHL A+ +GR IH    K   G  N   +  SLI MYAKCG I+ A  +F       + S
Sbjct: 328 AHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSS 387

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMT 583
           WN++I G+A++G A  A  LF  M   G+ PD +T +G+LSACSH GL+D G  +F+ +T
Sbjct: 388 WNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVT 447

Query: 584 EVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLG 643
           + Y I P +EHY CMIDLL  AG   EA E++  M ++P+  IW +LL AC+MH N++L 
Sbjct: 448 QDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELA 507

Query: 644 RIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQ 703
               +KL E+EP+ +  Y LLSN++A AGRW++V ++R  + G G +K PGCS IE+ + 
Sbjct: 508 ESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSV 567

Query: 704 IHTFLSGDPKQCRTAEICNTLKTL 727
           +H F+ GD    ++ EI   L+ +
Sbjct: 568 VHEFIIGDKLHPQSREIYRMLEEM 591



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 131/520 (25%), Positives = 230/520 (44%), Gaps = 64/520 (12%)

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTR 120
           A  +FE   + NL+ WN+M+ G   +  +    E++ +M      P+ +++  ++    +
Sbjct: 36  AVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAK 95

Query: 121 KGELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSM 177
               E+ R++      L  + D     ++++ YA+ G   +A+K+ D    +++VS  ++
Sbjct: 96  SKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTAL 155

Query: 178 LSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV--- 234
           ++GY   G++  A K F+ + ERDVVSWN M+ GYVE    + A + F+++   NV    
Sbjct: 156 ITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDE 215

Query: 235 -SWVTMLSGYARNGRMLEARRLFDQMPIRN-----VVAWNAMIAAYVQRGQIEEAARLFI 288
            + V++LS  A++G +   R +   +   +     +   NA I  Y + G +E A+ LF 
Sbjct: 216 GTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFE 275

Query: 289 EMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM----PYKNIAAQTAMISGYVQNKRMDE 344
            +  ++ VSW T+I GY  +    EA  L  +M       N     +++        +D 
Sbjct: 276 GLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDI 335

Query: 345 ANQIFDKIG------THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGY 398
              I   I       T+       +I  YA+CG ++ A  +F  M++K + +WN MI G+
Sbjct: 336 GRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGF 395

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           A              M  R N                   A  +F  M + G + D  TL
Sbjct: 396 A--------------MHGRANA------------------AFDLFSRMRKNGIEPDDITL 423

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVN-DLFVGNSLITMYAKCGRIQNAELLFK--D 515
              LSAC+H   L LGR I     +   +   L     +I +    G  + AE +     
Sbjct: 424 VGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMP 483

Query: 516 ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555
            +P  VI W SL+    ++GN  E  + F + +ME + P+
Sbjct: 484 MEPDGVI-WCSLLKACKMHGN-LELAESFAQKLME-IEPE 520



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 110/403 (27%), Positives = 186/403 (46%), Gaps = 36/403 (8%)

Query: 27  KSGRVEEAIKIFSQM----SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNS 82
           KS   EE  +I +Q+     + +   + S+IS YA+NGR+ DARK+F+   QR++VS  +
Sbjct: 95  KSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTA 154

Query: 83  MIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN---KED 139
           +I GY     V+ AR++FD +   D+ SW  MIT Y      E+A ELF  +     + D
Sbjct: 155 LITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPD 214

Query: 140 TACWNAMVAGYAKIGNYN---EAKKLLDAM----PSKNIVSWNSMLSGYTKNGEMHLASK 192
                ++++  A+ G+     E   L+D       S  IV  N+ +  Y+K G++ +AS 
Sbjct: 215 EGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIV--NAFIGLYSKCGDVEIASG 272

Query: 193 FFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSGYARNGR 248
            FE +  +DVVSWN ++ GY  ++    A   FQ++       N V+ +++L   A  G 
Sbjct: 273 LFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGA 332

Query: 249 MLEAR--RLFDQMPIRNVVAWNA----MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMI 302
           +   R   ++    ++ V   +A    +I  Y + G IE A ++F  M  ++  SW  MI
Sbjct: 333 IDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMI 392

Query: 303 DGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIG----- 353
            G+    + + A  L  +M    I         ++S    +  +D    IF  +      
Sbjct: 393 FGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNI 452

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMI 395
           T  +  +  MI      G   EA  +   M +  D V W +++
Sbjct: 453 TPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLL 495



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 149/294 (50%), Gaps = 20/294 (6%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           +     I+   ++GR+E+A K+F   SQ++ V+  ++I+ YA  G V  ARK+F+ + +R
Sbjct: 119 YAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITER 178

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELF 131
           ++VSWN+MI GY+ N   +EA ELF +M     RPD  +   +++   + G +E  RE+ 
Sbjct: 179 DVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIH 238

Query: 132 DLLPNKE----DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
            L+ +           NA +  Y+K G+   A  L + +  K++VSWN+++ GYT     
Sbjct: 239 TLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLY 298

Query: 188 HLASKFFEAM----EERDVVSWNLMLDGYVELDDLD-SAW------KFFQKIPEQNVVSW 236
             A   F+ M    E  + V+   +L     L  +D   W      K  + +   + +  
Sbjct: 299 KEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALR- 357

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
            +++  YA+ G +  A ++F+ M  +++ +WNAMI  +   G+   A  LF  M
Sbjct: 358 TSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRM 411



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 13/159 (8%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           I    K G +E A ++F+ M  K+  ++N+MI  +A +GR N A  LF +M +  +   +
Sbjct: 361 IDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDD 420

Query: 82  SMIAGYL----HNDKVKEARELF-----DKMFRPDLFSWALMITCYTRKGELEKARELFD 132
             + G L    H+  +   R +F     D    P L  +  MI      G  ++A E+  
Sbjct: 421 ITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIH 480

Query: 133 LLPNKEDTACWNAMVAGYAKIGNY----NEAKKLLDAMP 167
           ++P + D   W +++      GN     + A+KL++  P
Sbjct: 481 MMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEP 519


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 193/598 (32%), Positives = 308/598 (51%), Gaps = 71/598 (11%)

Query: 178 LSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI----PEQNV 233
            S  +++G++  A   F ++EE ++  WN M+ G         A  FF ++     E N 
Sbjct: 70  FSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNS 129

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
            ++  +L   A+     E +++                A  ++ G + +   +FI     
Sbjct: 130 YTFPFLLKSCAKLASAHEGKQIH---------------AHVLKLGFVSD---VFIH---- 167

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
                T++I+ Y +  +++ A+ + DQ  +++  + TA+I+GY     MD A Q+FD++ 
Sbjct: 168 -----TSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMP 222

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQM--------------------------VNKD 387
             DVV WN MI GYAQ GR  EA+ LF  M                          +   
Sbjct: 223 VKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNS 282

Query: 388 IVTW-------------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
           + +W             N +I  Y++   +  A ++F++M   R+ +SWN +I G+    
Sbjct: 283 MRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDM-LERDVISWNVMIGGYTHMC 341

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN 494
            + +AL +F  M   G +    T    L +CAHL A+ LG+ IH    K+       +  
Sbjct: 342 SYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLST 401

Query: 495 SLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP 554
           SLI +YAKCG I  A  +F       + SWN++I G A++G A +A +LF +M  +G+ P
Sbjct: 402 SLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEP 461

Query: 555 DPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEM 614
           + +TF+G+LSAC H GLVD G + F  M + Y I P  +HY CMIDLL RAG  +EA  +
Sbjct: 462 NEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESL 521

Query: 615 VKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRW 674
           ++ M++KP+  IWG+LLGACR H  ++LG +  E+L ELEP     Y LLSN++A AG+W
Sbjct: 522 LQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKW 581

Query: 675 DEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           D+V ++R  +   G +K PGC+ IEV N +H FL GD    ++ +I   L+ +  Q++
Sbjct: 582 DDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLK 639



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 194/426 (45%), Gaps = 37/426 (8%)

Query: 21  KITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSW 80
           + + + +SG +  AI +F+ + + N   +NSMI   + +     A   F +M     V  
Sbjct: 69  EFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSG-VEP 127

Query: 81  NSMIAGYLHNDKVK-----EARELFDKM----FRPDLFSWALMITCYTRKGELEKARELF 131
           NS    +L     K     E +++   +    F  D+F    +I  Y + GE+  A+ +F
Sbjct: 128 NSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVF 187

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
           D   N  D   + A++AGYA  G  + A++L D MP K++VSWN+M++GY + G    A 
Sbjct: 188 D-QSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEAL 246

Query: 192 KFFEAME-------ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG-- 242
             FE M        E  +VS   +L    + + LD        I ++ + S + +++   
Sbjct: 247 LLFEDMRKANVPPNESTIVS---VLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALI 303

Query: 243 --YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPV 296
             Y++ G +  AR LFD M  R+V++WN MI  Y      +EA  LF EM     E   +
Sbjct: 304 DMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEI 363

Query: 297 SWTTMIDGYVRIAKLDEAR----RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
           ++ +++     +  +D  +     +       + +  T++I  Y +   +  A Q+FD +
Sbjct: 364 TFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGM 423

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI----VTWNTMIAGYAQIRQMDDAV 408
               +  WN MI G A  G+ D+A  LF +M +  I    +T+  +++       +D   
Sbjct: 424 KIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQ 483

Query: 409 KIFEEM 414
           + F  M
Sbjct: 484 QFFSSM 489



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 187/406 (46%), Gaps = 48/406 (11%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S VF     I    +SG +  A  +F Q + ++ +++ ++I+ YA  G ++ AR+LF++M
Sbjct: 162 SDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEM 221

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAR 128
           P +++VSWN+MIAGY    + KEA  LF+ M +    P+  +   +++   +   L+   
Sbjct: 222 PVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGN 281

Query: 129 ELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
            +   + ++    +    NA++  Y+K G+   A++L D M  ++++SWN M+ GYT   
Sbjct: 282 SMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMC 341

Query: 186 EMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNV-----VSW 236
               A   F  M    V    +++  +L     L  +D   K+      +N         
Sbjct: 342 SYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLG-KWIHAYINKNFNSVSTSLS 400

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----E 292
            +++  YA+ G ++ AR++FD M I+++ +WNAMI      GQ ++A  LF +M     E
Sbjct: 401 TSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIE 460

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
            N +++  ++        +D  ++    M               VQ+ ++   +Q +   
Sbjct: 461 PNEITFVGILSACKHAGLVDLGQQFFSSM---------------VQDYKISPKSQHY--- 502

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAG 397
                     MI    + G  +EA +L + M V  D   W +++  
Sbjct: 503 --------GCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGA 540



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 82/160 (51%), Gaps = 7/160 (4%)

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYA--KCGRIQNAEL 511
           +H +L   LS C    +++  +QIH   IK+G  N LF  + LI   A  + G I  A  
Sbjct: 29  EHPSLKL-LSKCQ---SIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAIS 84

Query: 512 LFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
           LF   +  ++  WNS+I G +++ +   A+  F  M+  GV P+  TF  +L +C+ +  
Sbjct: 85  LFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLAS 144

Query: 572 VDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
              G ++   + ++  +  +  H + +I++ +++G ++ A
Sbjct: 145 AHEGKQIHAHVLKLGFVSDVFIHTS-LINMYAQSGEMNNA 183


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 182/499 (36%), Positives = 282/499 (56%), Gaps = 26/499 (5%)

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM-PERN---PVSWTTMI-------- 302
           + D  P R  V +N ++          +A  LF  M P+ +   P  +T  +        
Sbjct: 76  VLDASPDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAAT 135

Query: 303 DGYV--RIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW 360
           DG V  R      AR  LD     N+    + IS Y +  R D+A Q+F+++   DVV W
Sbjct: 136 DGLVLGRQIHSSTARLGLD----GNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSW 191

Query: 361 NVMIKGYAQCGRMDEAINLFRQMV-----NKDIVTWNTMIAGYAQIRQMDDAV--KIFEE 413
           N MI G+A  G    A+++FR++V       D  T  +++    + R  D A+   +F+E
Sbjct: 192 NAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDE 251

Query: 414 MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQL 473
           M + +  +SWNA+++ +  NE H++A+++F+ M ++G + D  TLA  L +C  ++AL L
Sbjct: 252 M-RFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSL 310

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           G++IH +  +    + + + N+L+ MYA CG ++ A  +F      DV+SW S+I+ Y  
Sbjct: 311 GKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGR 370

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVE 593
           +G+  EAI LFE+M  +G+ PD + F+ +L+ACSH GL+D G   F  MT  + I P +E
Sbjct: 371 HGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLE 430

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653
           HYACM+DLL RAG + EA++ +  M IKPN  +WG LLGACR+H N+ +G +A + L  L
Sbjct: 431 HYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRL 490

Query: 654 EPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPK 713
            P++T  Y LLSN++A AGRW +V  VR  ME  G +K PG S  E+ +++HTF  GD  
Sbjct: 491 APKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTS 550

Query: 714 QCRTAEICNTLKTLAAQIR 732
             ++  I   L  L  +IR
Sbjct: 551 HPQSKMIYKKLSELLRRIR 569



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 126/257 (49%), Gaps = 39/257 (15%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           N    +S IS YA+ GR +DA ++FE+M  R++VSWN+MI+G+ H      A ++F    
Sbjct: 156 NVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVF---- 211

Query: 105 RPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVA--GYAKIGNYNEAKKL 162
                                  REL  L   K D     +++   G A++ +    K +
Sbjct: 212 -----------------------RELVALQCPKPDAGTMASILPSMGKARVEDIALLKGV 248

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHL-ASKFFEAME----ERDVVSWNLMLDGYVELDD 217
            D M  K ++SWN+ML+ YT N EMH+ A + F  M+    E D V+   +L    E+  
Sbjct: 249 FDEMRFKGLISWNAMLAVYTNN-EMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSA 307

Query: 218 LDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
           L    +  + I  + + S +     ++  YA  G + EAR +FD M  R+VV+W ++I+A
Sbjct: 308 LSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISA 367

Query: 274 YVQRGQIEEAARLFIEM 290
           Y + G   EA  LF +M
Sbjct: 368 YGRHGHGREAIDLFEKM 384



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 156/342 (45%), Gaps = 30/342 (8%)

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER------DVVSWNLMLDGYVEL 215
           +LDA P +  V +N +L G T       A   F +M  +      D  ++ L L      
Sbjct: 76  VLDASPDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAAT 135

Query: 216 DDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
           D L    +          + NV    + +S YAR GR  +A ++F++M  R+VV+WNAMI
Sbjct: 136 DGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMI 195

Query: 272 AAYVQRGQIEEAARLFIEM-----PERNPVSWTTMID--GYVRIAKLDEARRLLDQMPYK 324
           + +   G    A  +F E+     P+ +  +  +++   G  R+  +   + + D+M +K
Sbjct: 196 SGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFK 255

Query: 325 NIAAQTAMISGYVQNKRMDEANQIF-----DKIGTHDVVCWNVM-----IKGYAQCGRMD 374
            + +  AM++ Y  N+   EA ++F     D I    V    V+     +   +   R+ 
Sbjct: 256 GLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIH 315

Query: 375 EAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
           E I   R+ +   ++  N ++  YA    + +A  +F+ MG  R+ VSW ++IS + ++ 
Sbjct: 316 EVIK--RRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGT-RDVVSWTSIISAYGRHG 372

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ 476
              +A+ +F  M  +G + D       L+AC+H   L +G+ 
Sbjct: 373 HGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKH 414



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 159/368 (43%), Gaps = 45/368 (12%)

Query: 68  LFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR------PDLFSWALMITCYTRK 121
           + +  P R  V +N ++ G       ++A  LF  M        PD +++ L +      
Sbjct: 76  VLDASPDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAAT 135

Query: 122 GELEKARELFD---LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSML 178
             L   R++      L    +    ++ ++ YA+ G  ++A ++ + M  +++VSWN+M+
Sbjct: 136 DGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMI 195

Query: 179 SGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
           SG+   G       F  AM            D + EL  L          P+   ++ + 
Sbjct: 196 SGFAHAG------LFGRAM------------DVFRELVALQCPK------PDAGTMASIL 231

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERN 294
              G AR   +   + +FD+M  + +++WNAM+A Y       EA  LF+ M     E +
Sbjct: 232 PSMGKARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPD 291

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA----QTAMISGYVQNKRMDEANQIFD 350
            V+  T++     ++ L   +R+ + +  + + +    + A++  Y     + EA  +FD
Sbjct: 292 AVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFD 351

Query: 351 KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVTWNTMIAGYAQIRQMDD 406
            +GT DVV W  +I  Y + G   EAI+LF +M  +    D + +  ++A  +    +D 
Sbjct: 352 SMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDM 411

Query: 407 AVKIFEEM 414
               F  M
Sbjct: 412 GKHYFYSM 419



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 9/146 (6%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +  +N  +      G ++EA  +F  M  ++ V++ S+ISAY ++G   +A  LFE+M
Sbjct: 325 SSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKM 384

Query: 73  PQRNL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGE 123
             + L    +++ +++A   H   +   +  F  M       P L  +A M+    R G 
Sbjct: 385 CGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGC 444

Query: 124 LEKARELFDLLPNKEDTACWNAMVAG 149
           + +A +   ++P K +   W A++  
Sbjct: 445 IREAYDFIMVMPIKPNERVWGALLGA 470



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 53/268 (19%), Positives = 116/268 (43%), Gaps = 44/268 (16%)

Query: 22  ITQLGKSGRVEEAI---KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           +  +GK+ RVE+      +F +M  K  +++N+M++ Y  N    +A +LF +M +  + 
Sbjct: 231 LPSMGKA-RVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIE 289

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWAL----MITCYTRKGELEKAREL 130
              V+  +++        +   + + + + R  + S  L    ++  Y   G L++AR++
Sbjct: 290 PDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDV 349

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGE 186
           FD +  + D   W ++++ Y + G+  EA  L + M  + +    +++ ++L+  +  G 
Sbjct: 350 FDSMGTR-DVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGL 408

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARN 246
           + +   +F +M                           F   P+  +  +  M+    R 
Sbjct: 409 LDMGKHYFYSMTSE------------------------FHIAPK--LEHYACMVDLLGRA 442

Query: 247 GRMLEARRLFDQMPIR-NVVAWNAMIAA 273
           G + EA      MPI+ N   W A++ A
Sbjct: 443 GCIREAYDFIMVMPIKPNERVWGALLGA 470


>gi|449521571|ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 817

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 225/767 (29%), Positives = 379/767 (49%), Gaps = 89/767 (11%)

Query: 53  ISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM------FRP 106
           +S   + G+++ AR+LF+ +P+ + V WN++I G + N+   EA   +  M       + 
Sbjct: 35  LSRLCQEGQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKC 94

Query: 107 DLFSWA--LMITCYTRKGELEKA-------------RELFDLLPNK----EDTACWNAMV 147
           D ++++  L     TR   + KA             R +++ L N       T     MV
Sbjct: 95  DSYTYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMV 154

Query: 148 AGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----V 203
           +GY++    +  +K+ D M  + +V+WN++++ Y +      A K F  M +  +    V
Sbjct: 155 SGYSRC---DLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPV 211

Query: 204 SWNLMLDGYVELDDLDSA---WKFFQKIPEQNVVSWVTMLSG---YARNGRMLEARRLFD 257
           S+  +   +  L D  +A        K+  + V     + S    YA  G +  A+++FD
Sbjct: 212 SFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFD 271

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER-----NPVSWTTMIDGYVRIAKLD 312
               RN   WN MI+A+VQ     E  +LF +  E      + V+  + I     + K +
Sbjct: 272 NCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFE 331

Query: 313 EARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
            A +L    +  +    +    A+I+ Y +   +D + +IFD +   DVV WN MI  + 
Sbjct: 332 LAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFV 391

Query: 369 QCGRMDEAINLFRQMVNKDI----VTWNTMIAGYAQIRQMD------------------- 405
           Q G  DEA+ LF +M  +D+    VT   +++  + +R  D                   
Sbjct: 392 QNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGM 451

Query: 406 ---------------DAVKIFEE-MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
                           A  +FE+     R+  +WN+++SG+ QN     A  I   M  +
Sbjct: 452 DSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQ 511

Query: 450 GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA 509
               +  TLA  L AC     +  G+Q+H  +I++    ++FV  +LI MY+K G I +A
Sbjct: 512 KVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHA 571

Query: 510 ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
           E +F  A+   +++++++I GY  +G    A+ +F  M   G+ PD VT + VLSACS+ 
Sbjct: 572 ENVFSKANEKSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYA 631

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNA-GIWG 628
           GLVD GL++FE M  VY I+P  EH+ C+ D+L RAGR+D+A+E V G+  K N   IWG
Sbjct: 632 GLVDEGLQIFESMRTVYNIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEKGNVMEIWG 691

Query: 629 TLLGACRMHQNIKLGRIAVEKLSELEP--QKTSCYALLSNMHAEAGRWDEVEKVRVSMEG 686
           +LL ACR+H+  +LG++  +KL E+E    KT  + LLSN++AE   W+ V+ VR  M  
Sbjct: 692 SLLAACRIHKQFELGKLVAKKLLEMEKINGKTGYHVLLSNIYAEERNWENVDIVRKQMRE 751

Query: 687 SGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
            G +K+ G SWIE+   ++ F S D K  ++ +I + L+ L  ++++
Sbjct: 752 RGLKKETGSSWIEIAGYMNHFASKDRKHPQSDQIYSMLEELLMEMKH 798



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 127/531 (23%), Positives = 218/531 (41%), Gaps = 134/531 (25%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           +T     M+S Y+   R +  RK+F+ M +R +V+WN++IA Y+  ++  EA + F  M 
Sbjct: 146 STTPDGKMVSGYS---RCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMM 202

Query: 104 ---FRPDLFSWALMITCYTRKGELEKARELFDLLPN-----KEDTACWNAMVAGYAKIGN 155
               +P   S+  +   ++  G+ + A  +  +L         D    ++ +  YA++G 
Sbjct: 203 KIGIKPSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGC 262

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNG-EMHLASKFFEAMEERD------------- 201
              AKK+ D    +N   WN+M+S + +N   +     FF+A+E  D             
Sbjct: 263 LEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAIS 322

Query: 202 --------------------------VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
                                     V   N ++  Y   + +D+++K F  +PE++VVS
Sbjct: 323 AASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVS 382

Query: 236 WVTMLSGYARNGRMLEARRLFDQMP----------------------------------I 261
           W TM+S + +NG   EA  LF +M                                   +
Sbjct: 383 WNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLL 442

Query: 262 RNVVAWNAM----IAAYVQRGQIEEAARLFIE--MPERNPVSWTTMIDGYVRIAKLDEA- 314
           RN + +  M    I  Y + G IE A  +F +    ER+  +W +M+ GY +   +D+A 
Sbjct: 443 RNGIQFEGMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAF 502

Query: 315 ---RRLLDQMPYKNIAAQTAMI-----SGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG 366
              R++LDQ    N+    +++     SGY+   +      I + +   +V     +I  
Sbjct: 503 LILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLD-QNVFVATALIDM 561

Query: 367 YAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNAL 426
           Y++ G +  A N+F +   K IVT++TMI GY Q             MG+          
Sbjct: 562 YSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQ-----------HGMGE---------- 600

Query: 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI 477
                       AL +F  M + G + D  TL   LSAC++   +  G QI
Sbjct: 601 -----------SALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQI 640



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 113/481 (23%), Positives = 200/481 (41%), Gaps = 80/481 (16%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR-----NLVSWNSM 83
           G +E A K+F    ++NT  +N+MISA+ +N    +  +LF Q  +      + V+  S 
Sbjct: 261 GCLEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSA 320

Query: 84  IAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPNKED 139
           I+   H  K + A +L   + +      +     +I  Y+R   ++ + ++FD +P K D
Sbjct: 321 ISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEK-D 379

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSG--------------- 180
              WN M++ + + G  +EA  L   M  +++    V+  ++LS                
Sbjct: 380 VVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHG 439

Query: 181 -------------------YTKNGEMHLASKFFEA--MEERDVVSWNLMLDGYVELDDLD 219
                              Y K+G +  A   FE     ERD  +WN M+ GY +   +D
Sbjct: 440 YLLRNGIQFEGMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVD 499

Query: 220 SAWKFFQKIPEQ----NVVSWVTML-----SGYARNGRMLEARRLFDQMPIRNVVAWNAM 270
            A+   +++ +Q    NVV+  ++L     SGY   G+ L    + + +  +NV    A+
Sbjct: 500 QAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLD-QNVFVATAL 558

Query: 271 IAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ- 329
           I  Y + G I  A  +F +  E++ V+++TMI GY +    + A  +  +M    I    
Sbjct: 559 IDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDA 618

Query: 330 ---TAMISGYVQNKRMDEANQIFDKI--------GTHDVVCWNVMIKGYAQCGRMDEAIN 378
               A++S       +DE  QIF+ +         T    C   M+    + GR+D+A  
Sbjct: 619 VTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPSTEHFCCVADML---GRAGRVDKAYE 675

Query: 379 LFRQMVNKDIV--TWNTMIAG---YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433
               +  K  V   W +++A    + Q        K   EM K      ++ L+S     
Sbjct: 676 FVIGLGEKGNVMEIWGSLLAACRIHKQFELGKLVAKKLLEMEKINGKTGYHVLLSNIYAE 735

Query: 434 E 434
           E
Sbjct: 736 E 736



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 143/368 (38%), Gaps = 57/368 (15%)

Query: 377 INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
           + L     N  I T    ++   Q  Q+  A ++F+ +  R +TV WN +I G + N F 
Sbjct: 17  LPLHTHSTNPKIPTIRYRLSRLCQEGQLHLARQLFDAL-PRPSTVLWNTIIIGLVCNNFP 75

Query: 437 LDALKIFVLMTQEGK--KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN 494
            +AL  +  M       K D  T +  L ACA    L +G+ +H   ++        V N
Sbjct: 76  DEALLFYSNMKSSSPQVKCDSYTYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYN 135

Query: 495 SLITMYAKC-------------GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
           SL+ MY+ C              R      +F       V++WN+LIA Y       EA+
Sbjct: 136 SLLNMYSMCSSTTPDGKMVSGYSRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAV 195

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVG------LVDGGL-KL-FECMTEVYAIEPLVE 593
           K F  M+  G+ P PV+F+ V  A S +G      +V G L KL  E + ++Y +   + 
Sbjct: 196 KQFSMMMKIGIKPSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIF 255

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653
            YA +  L       D   E         N  +W T++ A  +  N  L  I +      
Sbjct: 256 MYAELGCLEFAKKVFDNCLER--------NTEVWNTMISAF-VQNNFSLEGIQL------ 300

Query: 654 EPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPK 713
                        + +E    DEV  +      S  QK       E+  Q+H F+    K
Sbjct: 301 ---------FFQAVESEDAAIDEVTLLSAISAASHLQK------FELAEQLHAFVI---K 342

Query: 714 QCRTAEIC 721
                ++C
Sbjct: 343 NVAVTQVC 350



 Score = 46.6 bits (109), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 16/165 (9%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP- 73
           VF     I    KSG +  A  +FS+ ++K+ VTY++MI  Y ++G    A  +F +M  
Sbjct: 552 VFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGESALFMFHRMQK 611

Query: 74  ---QRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELE 125
              Q + V+  ++++   +   V E  ++F+ M      +P    +  +     R G ++
Sbjct: 612 SGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPSTEHFCCVADMLGRAGRVD 671

Query: 126 KARELFDLLPNKEDT-ACWNAMVAGYAKIGNYNE-----AKKLLD 164
           KA E    L  K +    W +++A   +I    E     AKKLL+
Sbjct: 672 KAYEFVIGLGEKGNVMEIWGSLLAA-CRIHKQFELGKLVAKKLLE 715


>gi|297850366|ref|XP_002893064.1| hypothetical protein ARALYDRAFT_472198 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338906|gb|EFH69323.1| hypothetical protein ARALYDRAFT_472198 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1490

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 221/738 (29%), Positives = 382/738 (51%), Gaps = 52/738 (7%)

Query: 19  NKKITQLGKSGRVEEAIK----IFSQMSQKNTVTYNSMISAYAKNGRVNDARKL---FEQ 71
           ++++  L ++G + EA K    +F Q S+    TY +++ +   +G ++  R L   F  
Sbjct: 50  DEQLDYLCRNGSLLEAEKALDSLFQQGSKVKRSTYLNLLESCIDSGSIHLGRILHARFGL 109

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
            P+ ++     +++ Y     + +AR++FD M   +L++W+ MI  Y+R+    +  +LF
Sbjct: 110 FPEPDVFVETKLLSMYAKCGCLVDARKVFDSMRERNLYTWSAMIGAYSRENRWREVSKLF 169

Query: 132 DLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSW-----NSMLSGYTK 183
            L+  +    D   +  ++ G A  G+  E  KL+ ++  K  +S      NS+L+ Y K
Sbjct: 170 RLMMEEGVLPDDFLFPKILQGCANCGDV-ETGKLIHSVVIKLGMSSCLRVSNSILAVYAK 228

Query: 184 NGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTM 239
            GE   A+KFF  M+ERDVV+WN +L  Y +    + A +  +++ ++ +    V+W  +
Sbjct: 229 CGEWDFATKFFRRMKERDVVAWNSVLLAYCQNGKHEEAVELVEEMEKEGISPGLVTWNIL 288

Query: 240 LSGYARNGRMLEARRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEM----- 290
           + GY + G+   A  L  +M       +V  W AMI+  +  G   +A  +F +M     
Sbjct: 289 IGGYNQLGKCDAAMDLMQKMENFGITADVFTWTAMISGLIHNGMRYQALDMFRKMFLAGV 348

Query: 291 -PERNPVSWTTMIDGYVRIAKL-DEARRLLDQMPY-KNIAAQTAMISGYVQNKRMDEANQ 347
            P    +        Y+++  L  E   +  +M +  ++    +++  Y +  ++++A +
Sbjct: 349 VPNAVTIMSAVSACSYLKVINLGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARK 408

Query: 348 IFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQ 403
           +FD +   DV  WN MI GY Q G   +A  LF +M    V  +I+TWNTMI+GY +   
Sbjct: 409 VFDSVKNKDVYTWNSMITGYCQAGYCGKAYELFTRMQDANVRPNIITWNTMISGYIKNGD 468

Query: 404 MDDAVKIFEEMGK----RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
             +A+ +F+ M K    +RNT +WN +I+G++QN    DAL+IF  M       +  T+ 
Sbjct: 469 EGEAMDLFQRMEKDGKVQRNTATWNLIIAGYIQNGKKDDALEIFRKMQFSRFMPNSVTIL 528

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
             L ACA+L   ++ R+IH   ++        V N+L   YAK G I  ++ +F   +  
Sbjct: 529 SLLPACANLLGTKMVREIHGCVLRRNLDAIHAVKNALTDTYAKSGDIGYSKTIFMGMETK 588

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
           D+I+WNSLI GY ++G+   A++LF +M  +G+ P+  T   ++ A   +G VD G K+F
Sbjct: 589 DIITWNSLIGGYVLHGSYGPALELFNQMKTQGIKPNRGTLSSIILAHGLMGNVDEGKKVF 648

Query: 580 ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
             +   Y I P +EH + M+ L  R+ RL+EA + ++ M I+    IW + L  CR+H +
Sbjct: 649 YSIANDYHIIPALEHCSAMVSLYGRSNRLEEALQFIQEMNIQSETPIWESFLTGCRIHGD 708

Query: 640 IKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQ-----KQP- 693
           I +   A E L  LEP+ T    ++S ++A         K+  S+EG   +     K+P 
Sbjct: 709 IDMAIHAAENLFSLEPENTVTENIVSQIYALGA------KLGRSLEGKKPRRDNLLKKPL 762

Query: 694 GCSWIEVKNQIHTFLSGD 711
           G SWIEV+N IHTF +GD
Sbjct: 763 GQSWIEVRNLIHTFTTGD 780


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 199/651 (30%), Positives = 350/651 (53%), Gaps = 54/651 (8%)

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
           ++ +     A+V  Y K G   + + + + MP +N+V+W S+L+GY +          F 
Sbjct: 131 DRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFF 190

Query: 196 AMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNG 247
            M    V     ++  +L        +D   +   +  +    S V    ++++ Y++ G
Sbjct: 191 RMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCG 250

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIE----MPERNPVSWTTMID 303
            + EA+ +F QM  R++V+WN ++A  +      EA +LF +    M + +  +++T+I 
Sbjct: 251 LVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIK 310

Query: 304 GYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI-GTHDVV 358
               + +L  AR+L    L    + +    TA++  Y +   +D+A  IF  + G+ +VV
Sbjct: 311 LCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVV 370

Query: 359 CWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNT--------------------- 393
            W  MI G  Q   +  A  LF +M    V  +  T++T                     
Sbjct: 371 SWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPILLPQIHAQIIKTN 430

Query: 394 ----------MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
                     ++A Y+++   ++A+ IF+ M   ++ V+W+A++S + Q      A  +F
Sbjct: 431 YQHAPSVGTALLASYSKLGNTEEALSIFK-MIDHKDVVAWSAMLSCYSQAGDCDGATNVF 489

Query: 444 VLMTQEGKKADHSTLACALSACAH-LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
           + M+ +G K +  T++ A+ ACA   A +  GRQ H ++IK  Y + + VG++L+TMYA+
Sbjct: 490 IKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYAR 549

Query: 503 CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
            G I +A ++F+     D++SWNS+I+GYA +G + EA+  F +M   G+  D  TF+ V
Sbjct: 550 KGSIDSARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAV 609

Query: 563 LSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKP 622
           +  C+H GLV  G + F+ M   + I P +EHY+CM+DL SRAG+LDE   +++GM    
Sbjct: 610 IVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMPFPA 669

Query: 623 NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRV 682
            A +W TLLGACR+H+N++LG++A +KL  LEP  ++ Y LLSN++A AGRW E ++VR 
Sbjct: 670 GAMVWRTLLGACRVHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAGRWKERDEVRK 729

Query: 683 SMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
            M+    +K+ GCSWI++KN++H+F++ D     + +I   LK +  +++ 
Sbjct: 730 LMDSKKVKKEAGCSWIQIKNKVHSFIACDKSHPLSEQIYAKLKAMTTRLKQ 780



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 129/549 (23%), Positives = 242/549 (44%), Gaps = 63/549 (11%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR---- 105
            +++  Y K G V D R +FE MP+RN+V+W S++ GY+      +   LF +M      
Sbjct: 139 TALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVW 198

Query: 106 PDLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNEAKKL 162
           P+ F++  +++    +G ++  R +         +      N+++  Y+K G   EAK +
Sbjct: 199 PNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAV 258

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE----AMEERDVVSWNLMLDGYVELDDL 218
              M ++++VSWN++++G   N     A + F     +M +    +++ ++     L  L
Sbjct: 259 FRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQL 318

Query: 219 DSAWKFFQKIPEQNVVS----WVTMLSGYARNGRMLEARRLFDQMP-IRNVVAWNAMIAA 273
             A +    + +    S       ++  Y++ G + +A  +F  MP  +NVV+W AMI  
Sbjct: 319 ALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGG 378

Query: 274 YVQRGQIEEAARLFIEMPE----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI-AA 328
            +Q   I  AA LF  M E     N  +++T++   + I  L +    + +  Y++  + 
Sbjct: 379 CIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPIL-LPQIHAQIIKTNYQHAPSV 437

Query: 329 QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----- 383
            TA+++ Y +    +EA  IF  I   DVV W+ M+  Y+Q G  D A N+F +M     
Sbjct: 438 GTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGM 497

Query: 384 ------VNKDIVTWNTMIAGYAQIRQMD----------------------------DAVK 409
                 ++  I    +  AG  Q RQ                              D+ +
Sbjct: 498 KPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDSAR 557

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           I  E    R+ VSWN++ISG+ Q+ +  +AL  F  M   G + D +T    +  C H  
Sbjct: 558 IVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTHAG 617

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNS-LITMYAKCGRIQNAELLFKDAD-PVDVISWNSL 527
            ++ G+Q     +    ++      S ++ +Y++ G++     L +    P   + W +L
Sbjct: 618 LVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAMVWRTL 677

Query: 528 IAGYAINGN 536
           +    ++ N
Sbjct: 678 LGACRVHKN 686



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/429 (27%), Positives = 214/429 (49%), Gaps = 31/429 (7%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQ---KNTV-TYNSMISAYAKNGRVNDARKLFEQ 71
           F     ++ +   G V+   ++ +Q  +   ++TV   NS+I+ Y+K G V +A+ +F Q
Sbjct: 202 FTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQ 261

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFD----KMFRPDLFSWALMITCYTRKGELEKA 127
           M  R++VSWN+++AG L N+   EA +LF      M +    +++ +I       +L  A
Sbjct: 262 METRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALA 321

Query: 128 RELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMP-SKNIVSWNSMLSGYTK 183
           R+L   +       D     A++  Y+K G  ++A  +   MP S+N+VSW +M+ G  +
Sbjct: 322 RQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQ 381

Query: 184 NGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT- 238
           N ++ LA+  F  M E +V     +++ +L   + +  L        K   Q+  S  T 
Sbjct: 382 NADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPI-LLPQIHAQIIKTNYQHAPSVGTA 440

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERN 294
           +L+ Y++ G   EA  +F  +  ++VVAW+AM++ Y Q G  + A  +FI+M     + N
Sbjct: 441 LLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPN 500

Query: 295 PVSWTTMIDGYVR-IAKLDEARRLLD-QMPYK---NIAAQTAMISGYVQNKRMDEANQIF 349
             + ++ ID      A +D+ R+     + Y+    I   +A+++ Y +   +D A  +F
Sbjct: 501 EFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDSARIVF 560

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMD 405
           ++    D+V WN MI GYAQ G   EA++ FRQM    +  D  T+  +I G      + 
Sbjct: 561 ERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTHAGLVK 620

Query: 406 DAVKIFEEM 414
           +  + F+ M
Sbjct: 621 EGQQYFDSM 629



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 107/446 (23%), Positives = 191/446 (42%), Gaps = 62/446 (13%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFE-- 70
           S VF  N  I    K G VEEA  +F QM  ++ V++N++++    N    +A +LF   
Sbjct: 234 STVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDS 293

Query: 71  --QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMIT----CYTRKGEL 124
              M + +  +++++I    +  ++  AR+L   + +    S   ++T     Y++ GEL
Sbjct: 294 RASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGEL 353

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN-------------- 170
           + A  +F L+P  ++   W AM+ G  +  +   A  L   M   N              
Sbjct: 354 DDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTA 413

Query: 171 ------------IVSWN---------SMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML 209
                       I+  N         ++L+ Y+K G    A   F+ ++ +DVV+W+ ML
Sbjct: 414 SIPILLPQIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAML 473

Query: 210 DGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARNGRMLEARRLFDQMPIR--- 262
             Y +  D D A   F K+  Q    N  +  + +   A     ++  R F  + I+   
Sbjct: 474 SCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRY 533

Query: 263 --NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
              +   +A++  Y ++G I+ A  +F    +R+ VSW +MI GY +     EA     Q
Sbjct: 534 QDAICVGSALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQ 593

Query: 321 MPYKNI----AAQTAMISGYVQNKRMDEANQIFDK-IGTHDVVC----WNVMIKGYAQCG 371
           M    I    A   A+I G      + E  Q FD  +  H++      ++ M+  Y++ G
Sbjct: 594 METVGIEMDGATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAG 653

Query: 372 RMDEAINLFRQM-VNKDIVTWNTMIA 396
           ++DE +NL   M      + W T++ 
Sbjct: 654 KLDETMNLIEGMPFPAGAMVWRTLLG 679



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 106/209 (50%), Gaps = 16/209 (7%)

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN-DLFVGNSL 496
           +AL  FV + + G+    + ++  L  C  +     G Q+H L +K G+   ++ VG +L
Sbjct: 83  EALDHFVDVHRCGR-VQGAAVSRVLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTAL 141

Query: 497 ITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
           + MY KCG +++  ++F+     +V++W SL+ GY      ++ + LF  M  EGV P+P
Sbjct: 142 VDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNP 201

Query: 557 VTFIGVLSACSHVGLVDGGLKL------FECMTEVYAIEPLVEHYACMIDLLSRAGRLDE 610
            TF  VLSA +  G VD G ++      F C + V+    L+  Y       S+ G ++E
Sbjct: 202 FTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMY-------SKCGLVEE 254

Query: 611 AFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
           A  + + M+ +     W TL+    ++++
Sbjct: 255 AKAVFRQMETRDMVS-WNTLMAGLLLNEH 282


>gi|449493040|ref|XP_004159175.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g18840-like [Cucumis sativus]
          Length = 1096

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 206/650 (31%), Positives = 358/650 (55%), Gaps = 25/650 (3%)

Query: 104  FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
            F P +F    +IT Y + G L  A++LFD +P + +   WNA++A Y K  N  +A+ L 
Sbjct: 442  FTPTIFMSNQLITFYAKHGLLNDAQKLFDEMPER-NVFSWNAIIAAYVKSQNLRQARALF 500

Query: 164  DAMPSKNIVSWNSMLSGYTK-NGEMHLASKFFEAMEER------DVVSWNLMLDGYVELD 216
            D+   K++V++NSMLSGY + +G    A  FF  M+        D  +   ML+   +L 
Sbjct: 501  DSAVCKDLVTYNSMLSGYARSDGYQGQALGFFMEMQTAPDMIRIDEFTLITMLNLTAKLC 560

Query: 217  DLDSAWKF----FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM-PIRNVVAWNAMI 271
             +    +      +   +  V +  +++  Y++ G   EA R++     + + V+ NAM+
Sbjct: 561  VISYGKQLHSFMLKTANDLTVFAASSLIDMYSKCGFFKEACRVYYGCGEVVDSVSRNAMV 620

Query: 272  AAYVQRGQIEEAARLF-IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA--- 327
            AA  + G+I+ A  LF  E+ + + V+W TMI G+V+    +E+ +L  +M  + +    
Sbjct: 621  AACCREGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYEEESLKLFVRMADEKVGWNE 680

Query: 328  -AQTAMISGYVQNKRMDEANQIF-----DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
                +++S     + +    ++      +++  +  +C   ++  Y +C  M  A ++  
Sbjct: 681  HTFASVLSACSNLRSLKLGKEVHAYVLKNRLIANPFICSG-LVDVYCKCNNMRYAESVNS 739

Query: 382  QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALK 441
            ++  +++ +  +MI GY+    M +A K+F+ + ++ N+V W AL  G+++ +      +
Sbjct: 740  ELRMQNVYSITSMIVGYSSQGNMAEARKLFDSLDEK-NSVVWTALFFGYVKLQQCEAVFE 798

Query: 442  IFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYA 501
            +     +E K  D   L   + ACA  AAL  G+QIH   +++G   D  + +SL+ MY+
Sbjct: 799  LLSEYRKEAKVPDVLILISIIGACAIQAALVPGKQIHSYMLRAGIKLDTKLTSSLVDMYS 858

Query: 502  KCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIG 561
            KCG I  AE +F++    D I +N +IAGYA +G   EA++LF+EMV  G  PD +TF+ 
Sbjct: 859  KCGSIIYAERIFREVTDKDSIIYNIMIAGYAHHGWENEAVQLFKEMVKHGFKPDAITFVA 918

Query: 562  VLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIK 621
            +LSAC H GLV+ G   F+ M+  Y I P ++HYACMIDL  RA +LD+A E ++ + I+
Sbjct: 919  LLSACRHGGLVELGEHFFDSMSNDYNICPEIDHYACMIDLYGRANQLDKALEFMRKIPIQ 978

Query: 622  PNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVR 681
             +A IWG  L ACR++ N +L R A ++L  +E +  S Y  L+N++A  G W+E+ ++R
Sbjct: 979  LDAVIWGAFLNACRINGNAELARKAEDELLVIEGENGSRYVQLANVYAAEGNWEEMGRIR 1038

Query: 682  VSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
              M+G   +K  GCSW+ V+++ H F+SGD    +   I +TL +L  ++
Sbjct: 1039 KKMKGKEVKKNAGCSWVFVESKFHVFISGDRFHSKNEAIYSTLASLTDEL 1088



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 149/605 (24%), Positives = 270/605 (44%), Gaps = 106/605 (17%)

Query: 15   VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            +F  N+ IT   K G + +A K+F +M ++N  ++N++I+AY K+  +  AR LF+    
Sbjct: 446  IFMSNQLITFYAKHGLLNDAQKLFDEMPERNVFSWNAIIAAYVKSQNLRQARALFDSAVC 505

Query: 75   RNLVSWNSMIAGYLHNDKVK-EARELF------DKMFRPDLFSWALMITCYTRKGELEKA 127
            ++LV++NSM++GY  +D  + +A   F        M R D F+   M+    +   +   
Sbjct: 506  KDLVTYNSMLSGYARSDGYQGQALGFFMEMQTAPDMIRIDEFTLITMLNLTAKLCVISYG 565

Query: 128  RELFD-LLPNKEDTACWNA--MVAGYAKIGNYNEAKKLLDAMPS-KNIVSWNSMLSGYTK 183
            ++L   +L    D   + A  ++  Y+K G + EA ++        + VS N+M++   +
Sbjct: 566  KQLHSFMLKTANDLTVFAASSLIDMYSKCGFFKEACRVYYGCGEVVDSVSRNAMVAACCR 625

Query: 184  NGEMHLASKFF-EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVT 238
             GE+ +A   F + +E+ DVV+WN M+ G+V+    + + K F ++ ++ V     ++ +
Sbjct: 626  EGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYEEESLKLFVRMADEKVGWNEHTFAS 685

Query: 239  MLSG-----------------------------------YARNGRMLEARRLFDQMPIRN 263
            +LS                                    Y +   M  A  +  ++ ++N
Sbjct: 686  VLSACSNLRSLKLGKEVHAYVLKNRLIANPFICSGLVDVYCKCNNMRYAESVNSELRMQN 745

Query: 264  VVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ--- 320
            V +  +MI  Y  +G + EA +LF  + E+N V WT +  GYV++ + +    LL +   
Sbjct: 746  VYSITSMIVGYSSQGNMAEARKLFDSLDEKNSVVWTALFFGYVKLQQCEAVFELLSEYRK 805

Query: 321  ---MPYKNI--------AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ 369
               +P   I        A Q A++ G   +  M  A    D   T        ++  Y++
Sbjct: 806  EAKVPDVLILISIIGACAIQAALVPGKQIHSYMLRAGIKLDTKLTSS------LVDMYSK 859

Query: 370  CGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
            CG +  A  +FR++ +KD + +N MIAGYA     ++AV++F+EM K             
Sbjct: 860  CGSIIYAERIFREVTDKDSIIYNIMIAGYAHHGWENEAVQLFKEMVKH------------ 907

Query: 430  FLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIH-HLAIKSGYVN 488
                                G K D  T    LSAC H   ++LG      ++       
Sbjct: 908  --------------------GFKPDAITFVALLSACRHGGLVELGEHFFDSMSNDYNICP 947

Query: 489  DLFVGNSLITMYAKCGRIQNA-ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEE- 546
            ++     +I +Y +  ++  A E + K    +D + W + +    INGNA  A K  +E 
Sbjct: 948  EIDHYACMIDLYGRANQLDKALEFMRKIPIQLDAVIWGAFLNACRINGNAELARKAEDEL 1007

Query: 547  MVMEG 551
            +V+EG
Sbjct: 1008 LVIEG 1012



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 4/95 (4%)

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
           L+ G   H   IKSG+   +F+ N LIT YAK G + +A+ LF +    +V SWN++IA 
Sbjct: 427 LKHGLLCHLQGIKSGFTPTIFMSNQLITFYAKHGLLNDAQKLFDEMPERNVFSWNAIIAA 486

Query: 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565
           Y  + N  +A  LF+      V  D VT+  +LS 
Sbjct: 487 YVKSQNLRQARALFD----SAVCKDLVTYNSMLSG 517


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 205/682 (30%), Positives = 351/682 (51%), Gaps = 37/682 (5%)

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKMF--RPDLFSWALMITCYTRKGELEK--ARE--- 129
           LV  NS++A      K +EA E+   +   R  +F ++L +     K +++K  AR    
Sbjct: 7   LVQSNSIVA-----SKSREAAEILVTVLTIRKSIFGFSLSLLGLEEKLQVQKENARSKPN 61

Query: 130 --LFDLLPNKEDTACWNAMVAGY-AKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
                L P   + A W  +   Y + +  +++   + D    K++++  + L       +
Sbjct: 62  SNFEGLGPMSREVAFWLQLFTSYQSGVPKFHQFSSVPDL---KHLLNNAAKLKSLKHATQ 118

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPE--QNVVSWVTMLSGYA 244
           +H  S+         + + N +L  Y +   +      F   P    NVV+W T+++  +
Sbjct: 119 IH--SQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLS 176

Query: 245 RNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPV 296
           R+ +  +A   F++M       N   ++A++ A      + E  ++   + +     +P 
Sbjct: 177 RSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPF 236

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT-- 354
             T ++D Y +   +  A  + D+MP++N+ +  +MI G+V+NK    A  +F ++ +  
Sbjct: 237 VATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLG 296

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTW----NTMIAGYAQIRQMDDAVKI 410
            D V  + ++   A    +D    +   +V + +V      N+++  Y +    +DA K+
Sbjct: 297 PDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKL 356

Query: 411 FEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAA 470
           F   G  R+ V+WN +I G  +      A   F  M +EG + D ++ +    A A +AA
Sbjct: 357 FCG-GGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAA 415

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
           L  G  IH   +K+G+V +  + +SL+TMY KCG + +A  +F++    +V+ W ++I  
Sbjct: 416 LTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITV 475

Query: 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP 590
           +  +G A EAIKLFEEM+ EGV P+ +TF+ VLSACSH G +D G K F  M  V+ I+P
Sbjct: 476 FHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKP 535

Query: 591 LVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL 650
            +EHYACM+DLL R GRL+EA   ++ M  +P++ +WG LLGAC  H N+++GR   E+L
Sbjct: 536 GLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERL 595

Query: 651 SELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSG 710
            +LEP     Y LLSN++   G  +E ++VR  M  +G +K+ GCSWI+VKN+   F + 
Sbjct: 596 FKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRTFVFNAN 655

Query: 711 DPKQCRTAEICNTLKTLAAQIR 732
           D    RT EI   L+ L   I+
Sbjct: 656 DRSHSRTQEIYGMLQKLKELIK 677



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/420 (26%), Positives = 196/420 (46%), Gaps = 31/420 (7%)

Query: 31  VEEAIKIFSQMSQKNT----VTYNSMISAYAKNGRVNDARKLFEQMPQ--RNLVSWNSMI 84
           ++ A +I SQ+   N        N+++  YAK G ++    LF   P    N+V+W ++I
Sbjct: 113 LKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLI 172

Query: 85  AGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNK--- 137
                ++K  +A   F++M      P+ F+++ ++        L + +++  L+      
Sbjct: 173 NQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFL 232

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
            D     A++  YAK G+   A+ + D MP +N+VSWNSM+ G+ KN     A   F  +
Sbjct: 233 NDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREV 292

Query: 198 EE--RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLE 251
                D VS + +L     L +LD   +    I ++ +V  V    +++  Y + G   +
Sbjct: 293 LSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFED 352

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVR 307
           A +LF     R+VV WN MI    +    E+A   F  M     E +  S++++      
Sbjct: 353 ATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASAS 412

Query: 308 IAKLDEA----RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVM 363
           IA L +       +L     KN    +++++ Y +   M +A Q+F +   H+VVCW  M
Sbjct: 413 IAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAM 472

Query: 364 IKGYAQCGRMDEAINLFRQMVNKDIV----TWNTMIAGYAQIRQMDDAVKIFEEMGKRRN 419
           I  + Q G  +EAI LF +M+N+ +V    T+ ++++  +   ++DD  K F  M    N
Sbjct: 473 ITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHN 532



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 164/389 (42%), Gaps = 54/389 (13%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR--PDL 108
           +++  YAK G +  A  +F++MP RNLVSWNSMI G++ N     A  +F ++    PD 
Sbjct: 240 ALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLGPDQ 299

Query: 109 FSWALMITCYTRKGELEKARELFDLLPNKEDTA---CWNAMVAGYAKIGNYNEAKKLLDA 165
            S + +++      EL+  +++   +  +         N++V  Y K G + +A KL   
Sbjct: 300 VSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCG 359

Query: 166 MPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSWNLMLDGYVELDDLDSA 221
              +++V+WN M+ G  +      A  +F+AM     E D  S++ +      +  L   
Sbjct: 360 GGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQG 419

Query: 222 WKFFQKIPEQNVV-------SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
                 + +   V       S VTM   Y + G ML+A ++F +    NVV W AMI  +
Sbjct: 420 TMIHSHVLKTGHVKNSRISSSLVTM---YGKCGSMLDAYQVFRETKEHNVVCWTAMITVF 476

Query: 275 VQRGQIEEAARLFIEM------PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA 328
            Q G   EA +LF EM      PE   +++ +++       K+D+  +  + M       
Sbjct: 477 HQHGCANEAIKLFEEMLNEGVVPEY--ITFVSVLSACSHTGKIDDGFKYFNSM------- 527

Query: 329 QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKD 387
                           AN    K G     C   M+    + GR++EA      M    D
Sbjct: 528 ----------------ANVHNIKPGLEHYAC---MVDLLGRVGRLEEACRFIESMPFEPD 568

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
            + W  ++    +   ++   ++ E + K
Sbjct: 569 SLVWGALLGACGKHANVEMGREVAERLFK 597



 Score = 92.4 bits (228), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 130/292 (44%), Gaps = 23/292 (7%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR---- 105
           NS++  Y K G   DA KLF     R++V+WN MI G       ++A   F  M R    
Sbjct: 338 NSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVE 397

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLL---PNKEDTACWNAMVAGYAKIGNYNEAKKL 162
           PD  S++ +         L +   +   +    + +++   +++V  Y K G+  +A ++
Sbjct: 398 PDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQV 457

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV----SWNLMLDGYVELDDL 218
                  N+V W +M++ + ++G  + A K FE M    VV    ++  +L        +
Sbjct: 458 FRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKI 517

Query: 219 DSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIA 272
           D  +K+F  +   + +      +  M+    R GR+ EA R  + MP   + + W A++ 
Sbjct: 518 DDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLG 577

Query: 273 AYVQRGQIE---EAARLFIEMPERNPVSWTTMIDGYVRIAKL---DEARRLL 318
           A  +   +E   E A    ++   NP ++  + + Y+R   L   DE RRL+
Sbjct: 578 ACGKHANVEMGREVAERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLM 629



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 148/332 (44%), Gaps = 44/332 (13%)

Query: 26  GKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM-----PQRNLVSW 80
            K G +  A  +F +M  +N V++NSMI  + KN     A  +F ++      Q ++ S 
Sbjct: 246 AKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLGPDQVSISSV 305

Query: 81  NSMIAGYLHNDKVKEAR-ELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKED 139
            S  AG +  D  K+    +  +     ++    ++  Y + G  E A +LF       D
Sbjct: 306 LSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLF-CGGGDRD 364

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASKFFE 195
              WN M+ G  +  N+ +A     AM  + +     S++S+            AS    
Sbjct: 365 VVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFH----------ASASIA 414

Query: 196 AMEERDVVSWNLMLDGYVELDDLDS--------------AWKFFQKIPEQNVVSWVTMLS 241
           A+ +  ++  +++  G+V+   + S              A++ F++  E NVV W  M++
Sbjct: 415 ALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMIT 474

Query: 242 GYARNGRMLEARRLFDQMPIRNVV----AWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
            + ++G   EA +LF++M    VV     + ++++A    G+I++  + F  M   + + 
Sbjct: 475 VFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIK 534

Query: 298 -----WTTMIDGYVRIAKLDEARRLLDQMPYK 324
                +  M+D   R+ +L+EA R ++ MP++
Sbjct: 535 PGLEHYACMVDLLGRVGRLEEACRFIESMPFE 566



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 79/154 (51%), Gaps = 9/154 (5%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV--- 78
           +T  GK G + +A ++F +  + N V + +MI+ + ++G  N+A KLFE+M    +V   
Sbjct: 442 VTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEY 501

Query: 79  -SWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFD 132
            ++ S+++   H  K+ +  + F+ M      +P L  +A M+    R G LE+A    +
Sbjct: 502 ITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIE 561

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
            +P + D+  W A++    K  N    +++ + +
Sbjct: 562 SMPFEPDSLVWGALLGACGKHANVEMGREVAERL 595



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 97/194 (50%), Gaps = 20/194 (10%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
           KN+   +S+++ Y K G + DA ++F +  + N+V W +MI  +  +    EA +LF++M
Sbjct: 433 KNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEM 492

Query: 104 FR----PDLFSWALMITCYTRKGELEKARELFDLL-------PNKEDTACWNAMVAGYAK 152
                 P+  ++  +++  +  G+++   + F+ +       P  E  AC   MV    +
Sbjct: 493 LNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYAC---MVDLLGR 549

Query: 153 IGNYNEAKKLLDAMP-SKNIVSWNSMLS--GYTKNGEM--HLASKFFEAMEERDVVSWNL 207
           +G   EA + +++MP   + + W ++L   G   N EM   +A + F+ +E  +  ++ L
Sbjct: 550 VGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFK-LEPDNPGNYML 608

Query: 208 MLDGYVELDDLDSA 221
           + + Y+    L+ A
Sbjct: 609 LSNIYIRHGMLEEA 622


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 199/640 (31%), Positives = 326/640 (50%), Gaps = 68/640 (10%)

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV 213
           G+ + A+ + D MP KNI S N +LS Y+ +G++  A   F +   R+  +W +M+  + 
Sbjct: 271 GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHA 330

Query: 214 ELDDLDSAWKFFQK------IPEQNVVSWV----------------------------TM 239
                  A   F+       IP++  V+ V                            T+
Sbjct: 331 AAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCNTL 390

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNP 295
           L  Y ++G +  ARR+F +M  ++ V +NAM+    + G   +A +LF  M      R+P
Sbjct: 391 LDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHP 450

Query: 296 VSW-------------------TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGY 336
           +                      +++D Y +   LD+ RRL D+MP ++  +   +I+ Y
Sbjct: 451 LHLLQYSHSRSRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAY 510

Query: 337 VQNKRMDEANQIF---DKIG-THDVVCWNVMIK-----GYAQCGRMDEAINLFRQMVNKD 387
             N+      ++F    K+G    V+ +  M+           G+   A  +   + ++D
Sbjct: 511 AWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASED 570

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMT 447
           ++  N +I  Y++   +D A   F    ++ + +SW ALI+G++QN  H +AL++F  M 
Sbjct: 571 LLG-NALIDMYSKCGMLDAAKSNFSNRSEK-SAISWTALITGYVQNGQHEEALQLFSDMR 628

Query: 448 QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
           + G + D +T +  + A + LA + LGRQ+H   I+SGY + +F G+ L+ MYAKCG + 
Sbjct: 629 RAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLD 688

Query: 508 NAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
            A   F +    + ISWN++I+ YA  G A  AIK+FE M+  G  PD VTF+ VL+ACS
Sbjct: 689 EALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACS 748

Query: 568 HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIW 627
           H GL D  +K F  M   Y+I P  EHYAC+ID L R G   +  +M+  M  K +  IW
Sbjct: 749 HNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIW 808

Query: 628 GTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGS 687
            ++L +CR+H N +L R+A +KL  +EP   + Y +LSN++A AG+W++   V+  M   
Sbjct: 809 TSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDR 868

Query: 688 GAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
           G +K+ G SW+E+K +I++F S D       EI + L  L
Sbjct: 869 GVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRL 908



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 121/512 (23%), Positives = 227/512 (44%), Gaps = 79/512 (15%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            +  N  +  L  SG +  A  +F QM  KN  + N ++SAY+ +G +  A+ LF   P 
Sbjct: 257 TYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPH 316

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFR---------------------PDLFSWAL 113
           RN  +W  M+  +    +  +A  LF  M                       P L  +A+
Sbjct: 317 RNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAI 376

Query: 114 -------------MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
                        ++  Y + G L  AR +F L  + +D   +NAM+ G +K G + +A 
Sbjct: 377 KFGLDTHVFVCNTLLDAYCKHGLLAAARRVF-LEMHDKDAVTYNAMMMGCSKEGLHTQAL 435

Query: 161 KLLDAMPSK-----------------------NIVSWNSMLSGYTKNGEMHLASKFFEAM 197
           +L  AM                          N+   NS+L  Y+K   +    + F+ M
Sbjct: 436 QLFAAMRRAGYSRHPLHLLQYSHSRSRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEM 495

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLS--GYARN---GR 248
            ERD VS+N+++  Y       +  + F+++     ++ V+ + TMLS  G   +   G+
Sbjct: 496 PERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGK 555

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRI 308
            + A+ +   +   +++  NA+I  Y + G ++ A   F    E++ +SWT +I GYV+ 
Sbjct: 556 QIHAQLVLLGLASEDLLG-NALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQN 614

Query: 309 AKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH--------DVVCW 360
            + +EA +L   M    +    A  S  ++         +  ++ ++         V   
Sbjct: 615 GQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSG 674

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKR 417
           +V++  YA+CG +DEA+  F +M  ++ ++WN +I+ YA   +  +A+K+FE M   G  
Sbjct: 675 SVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFN 734

Query: 418 RNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
            ++V++ ++++    N    + +K F LM  +
Sbjct: 735 PDSVTFLSVLAACSHNGLADECMKYFHLMKHQ 766



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 148/604 (24%), Positives = 249/604 (41%), Gaps = 133/604 (22%)

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           NL   + + +G+LH      AR +FD+M   ++FS  L+++ Y+  G+L  A+ LF   P
Sbjct: 261 NLGLRSLLSSGHLH-----RARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSP 315

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAM-----------------------PS---- 168
           ++  T  W  M+  +A  G  ++A  L  AM                       PS    
Sbjct: 316 HRNATT-WTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPF 374

Query: 169 -------KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA 221
                   ++   N++L  Y K+G +  A + F  M ++D V++N M+ G  +      A
Sbjct: 375 AIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQA 434

Query: 222 WKFFQKIPEQ-----------------------NVVSWVTMLSGYARNGRMLEARRLFDQ 258
            + F  +                          NV    ++L  Y++   + + RRLFD+
Sbjct: 435 LQLFAAMRRAGYSRHPLHLLQYSHSRSRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDE 494

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEA 314
           MP R+ V++N +IAAY          RLF EM     +R  + + TM+     +  +   
Sbjct: 495 MPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIG 554

Query: 315 RRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC 370
           +++  Q+    +A++     A+I  Y +   +D A   F        + W  +I GY Q 
Sbjct: 555 KQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQN 614

Query: 371 GRMDEAINLFRQM----VNKDIVTWNTMIAG----------------------------- 397
           G+ +EA+ LF  M    +  D  T++++I                               
Sbjct: 615 GQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSG 674

Query: 398 ------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK 451
                 YA+   +D+A++ F+EM   RN++SWNA+IS +       +A+K+F  M   G 
Sbjct: 675 SVLVDMYAKCGCLDEALRTFDEM-PERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGF 733

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN--SLITMYAKCG---RI 506
             D  T    L+AC+H        +  HL +K  Y    +  +   +I    + G   ++
Sbjct: 734 NPDSVTFLSVLAACSHNGLADECMKYFHL-MKHQYSISPWKEHYACVIDTLGRVGCFSQV 792

Query: 507 QN--AELLFKDADPVDVISWNSLIAGYAINGNA----TEAIKLFEEMVMEGVAPDPVTFI 560
           Q    E+ FK ADP   I W S++    I+GN       A KLF      G+ P   T  
Sbjct: 793 QKMLVEMPFK-ADP---IIWTSILHSCRIHGNQELARVAADKLF------GMEPTDATPY 842

Query: 561 GVLS 564
            +LS
Sbjct: 843 VILS 846



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 158/365 (43%), Gaps = 74/365 (20%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           ++VF  N  +    K G +  A ++F +M  K+ VTYN+M+   +K G    A +LF  M
Sbjct: 382 THVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAM 441

Query: 73  PQRNLVSWNSMIAGY----LHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAR 128
            +          AGY    LH  +   +R     +   ++F    ++  Y++   L+  R
Sbjct: 442 RR----------AGYSRHPLHLLQYSHSRSRSTSVL--NVFVNNSLLDFYSKCDCLDDMR 489

Query: 129 ELFDLLPNKEDTACWNAMVAGYA-------KIGNYNEAKKL-LDAMPSKNIVSWNSMLSG 180
            LFD +P + D   +N ++A YA        +  + E +KL  D    + ++ + +MLS 
Sbjct: 490 RLFDEMPER-DNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFD----RQVLPYATMLSV 544

Query: 181 YTKNGEMHLASKFFE-----AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
                ++H+  +         +   D++  N ++D Y +   LD+A   F    E++ +S
Sbjct: 545 AGSLPDVHIGKQIHAQLVLLGLASEDLLG-NALIDMYSKCGMLDAAKSNFSNRSEKSAIS 603

Query: 236 WVTMLSGYARNGRMLEARRLFDQM------PIR--------------------------- 262
           W  +++GY +NG+  EA +LF  M      P R                           
Sbjct: 604 WTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLI 663

Query: 263 ------NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
                 +V + + ++  Y + G ++EA R F EMPERN +SW  +I  Y    +   A +
Sbjct: 664 RSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIK 723

Query: 317 LLDQM 321
           + + M
Sbjct: 724 MFEGM 728



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 130/285 (45%), Gaps = 20/285 (7%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           N++I  Y+K G ++ A+  F    +++ +SW ++I GY+ N + +EA +LF  M     R
Sbjct: 574 NALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLR 633

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL 162
           PD  +++ +I   +    +   R+L   L     K      + +V  YAK G  +EA + 
Sbjct: 634 PDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRT 693

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE----RDVVSWNLMLDGYVELDDL 218
            D MP +N +SWN+++S Y   GE   A K FE M       D V++  +L         
Sbjct: 694 FDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLA 753

Query: 219 DSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIA 272
           D   K+F  +  Q  +S     +  ++    R G   + +++  +MP + + + W +++ 
Sbjct: 754 DECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILH 813

Query: 273 AYVQRGQIE---EAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
           +    G  E    AA     M   +   +  + + Y R  + ++A
Sbjct: 814 SCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDA 858



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 135/288 (46%), Gaps = 24/288 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  I    K G ++ A   FS  S+K+ +++ ++I+ Y +NG+  +A +LF  M +  L 
Sbjct: 574 NALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLR 633

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAREL 130
               +++S+I        +   R+L   + R      +FS ++++  Y + G L++A   
Sbjct: 634 PDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRT 693

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP----SKNIVSWNSMLSGYTKNGE 186
           FD +P + ++  WNA+++ YA  G    A K+ + M     + + V++ S+L+  + NG 
Sbjct: 694 FDEMPER-NSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGL 752

Query: 187 MHLASKFFEAMEERDVVS-----WNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSWVTML 240
                K+F  M+ +  +S     +  ++D    +       K   ++P + + + W ++L
Sbjct: 753 ADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSIL 812

Query: 241 SGYARNGRMLEAR----RLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA 284
                +G    AR    +LF   P  +   +  +   Y + GQ E+AA
Sbjct: 813 HSCRIHGNQELARVAADKLFGMEPT-DATPYVILSNIYARAGQWEDAA 859



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 97/209 (46%), Gaps = 37/209 (17%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S VF+ +  +    K G ++EA++ F +M ++N++++N++ISAYA  G   +A K+FE M
Sbjct: 669 SSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGM 728

Query: 73  PQ----RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAR 128
                  + V++ S++A   HN    E  + F  M                        +
Sbjct: 729 LHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLM------------------------K 764

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK-NIVSWNSMLSGYTKNGEM 187
             + + P KE  AC   ++    ++G +++ +K+L  MP K + + W S+L     +G  
Sbjct: 765 HQYSISPWKEHYAC---VIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQ 821

Query: 188 HL----ASKFFEAMEERDVVSWNLMLDGY 212
            L    A K F  ME  D   + ++ + Y
Sbjct: 822 ELARVAADKLF-GMEPTDATPYVILSNIY 849


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 198/600 (33%), Positives = 311/600 (51%), Gaps = 97/600 (16%)

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV---VAWNAMIAAYVQRGQIEEAARL 286
           E NV     ++S Y R G    AR++FD+M  R V   V+WN+++AAY+Q G    A ++
Sbjct: 177 EWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKM 236

Query: 287 FIEMPERNPV------------------SWT----------------------TMIDGYV 306
           F  M E   +                  +W+                       ++D Y 
Sbjct: 237 FERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYA 296

Query: 307 RIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNV 362
           +   ++EA ++ ++M  K++ +  AM++GY Q  R D+A  +F+KI       +VV W+ 
Sbjct: 297 KCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSA 356

Query: 363 MIKGYAQCGRMDEAINLFRQMV-------------------------------------- 384
           +I GYAQ G   EA+++FRQM+                                      
Sbjct: 357 VIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWI 416

Query: 385 --------NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMG-KRRNTVSWNALISGFLQNEF 435
                     D++  N +I  Y++ +    A  +F+ +  K R+ V+W  LI G  Q+  
Sbjct: 417 LNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGE 476

Query: 436 HLDALKIFVLMTQEGK--KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND-LFV 492
             +AL++F  M Q       +  T++CAL ACA L AL+ GRQIH   +++ + +  LFV
Sbjct: 477 ANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFV 536

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
            N LI MY+K G +  A ++F +    + +SW SL+ GY ++G   EA+++F EM    +
Sbjct: 537 ANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXL 596

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
            PD VTF+ VL ACSH G+VD G+  F  M + + + P  EHYACM+DLLSRAGRLDEA 
Sbjct: 597 VPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAM 656

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672
           E+++GM +KP   +W  LL ACR++ N++LG  A  +L ELE      Y LLSN++A A 
Sbjct: 657 ELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANAR 716

Query: 673 RWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            W +V ++R  M+ +G +K+PGCSW++ +    TF +GD     + +I + L+ L  +I+
Sbjct: 717 CWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIK 776



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 115/423 (27%), Positives = 205/423 (48%), Gaps = 43/423 (10%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR---NLVSWNSMIAGYLHNDKV 93
           +F+   + N    N ++S Y + G   +AR++F++M +R   +LVSWNS++A Y+     
Sbjct: 171 VFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDS 230

Query: 94  KEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNA 145
             A ++F++M      RPD  S   ++      G   + +++          ED    NA
Sbjct: 231 IRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNA 290

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----D 201
           +V  YAK G   EA K+ + M  K++VSWN+M++GY++ G    A   FE + E     +
Sbjct: 291 VVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELN 350

Query: 202 VVSWNLMLDGYVE----LDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR--- 254
           VV+W+ ++ GY +     + LD   +      E NVV+ V++LSG A  G +L  +    
Sbjct: 351 VVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHC 410

Query: 255 --------LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP--ERNPVSWTTMIDG 304
                   L +  P  +++  NA+I  Y +    + A  +F  +P  +R+ V+WT +I G
Sbjct: 411 HAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGG 470

Query: 305 YVRIAKLDEARRLLDQM--PYKNIAAQTAMIS---------GYVQNKRMDEANQIFDKIG 353
             +  + +EA  L  QM  P   +      IS         G ++  R   A  + ++  
Sbjct: 471 NAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFE 530

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEE 413
           +  +   N +I  Y++ G +D A  +F  M  ++ V+W +++ GY    + ++A++IF E
Sbjct: 531 SAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYE 590

Query: 414 MGK 416
           M K
Sbjct: 591 MQK 593



 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 176/385 (45%), Gaps = 71/385 (18%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  N  +    K G +EEA K+F +M  K+ V++N+M++ Y++ GR +DA  LFE++ +
Sbjct: 285 VFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIRE 344

Query: 75  R----NLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEK 126
                N+V+W+++IAGY       EA ++F +M      P++ +   +++     G L  
Sbjct: 345 EKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLH 404

Query: 127 ARE--------LFDLLPNK--EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN--IVSW 174
            +E        + +L  N   +D    NA++  Y+K  +   A+ + D +P K+  +V+W
Sbjct: 405 GKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTW 464

Query: 175 NSMLSGYTKNGEMHLASKFFEAMEERD--------------------------------- 201
             ++ G  ++GE + A + F  M + D                                 
Sbjct: 465 TVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYV 524

Query: 202 ---------VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA 252
                    +   N ++D Y +  D+D+A   F  + ++N VSW ++++GY  +GR  EA
Sbjct: 525 LRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEA 584

Query: 253 RRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-----SWTTMID 303
            ++F +M     + + V +  ++ A    G +++    F  M +   V      +  M+D
Sbjct: 585 LQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVD 644

Query: 304 GYVRIAKLDEARRLLDQMPYKNIAA 328
              R  +LDEA  L+  MP K   A
Sbjct: 645 LLSRAGRLDEAMELIRGMPMKPTPA 669



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 135/261 (51%), Gaps = 7/261 (2%)

Query: 367 YAQCGRMDEAINLFRQMVNKDIVTWNT-MIAGYAQIRQMDDAVKIFEEMGKRRNTVSW-N 424
           + QC  +  A    +Q++ + +    T +I+ Y        A+ +   +    +TV W N
Sbjct: 55  FHQCKSLASAELTHQQLLVQGLPHDPTHIISMYLTFNSPAKALSVLRRLHPSSHTVFWWN 114

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
            LI   +   F  D L+++  M + G + DH T    L AC  + + + G  +H +   S
Sbjct: 115 QLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVFAS 174

Query: 485 GYVNDLFVGNSLITMYAKCGRIQNAELLF---KDADPVDVISWNSLIAGYAINGNATEAI 541
           G+  ++FVGN L++MY +CG  +NA  +F   ++    D++SWNS++A Y   G++  A+
Sbjct: 175 GFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAM 234

Query: 542 KLFEEMVME-GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMID 600
           K+FE M  + G+ PD V+ + VL AC+ VG    G ++          E +    A ++D
Sbjct: 235 KMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNA-VVD 293

Query: 601 LLSRAGRLDEAFEMVKGMKIK 621
           + ++ G ++EA ++ + MK+K
Sbjct: 294 MYAKCGMMEEANKVFERMKVK 314



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 136/281 (48%), Gaps = 25/281 (8%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMP--QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPD 107
           N++I  Y+K      AR +F+ +P   R++V+W  +I G   + +  EA ELF +M +PD
Sbjct: 432 NALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPD 491

Query: 108 LFSW--ALMITCY----TRKGELEKARELFD-LLPNKEDTACW---NAMVAGYAKIGNYN 157
            F    A  I+C      R G L   R++   +L N+ ++A     N ++  Y+K G+ +
Sbjct: 492 NFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVD 551

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE----RDVVSWNLMLDGYV 213
            A+ + D M  +N VSW S+++GY  +G    A + F  M++     D V++ ++L    
Sbjct: 552 AARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACS 611

Query: 214 ELDDLDSAWKFFQKIPEQNVV-----SWVTMLSGYARNGRMLEARRLFDQMPIRNVVA-W 267
               +D    +F  + +   V      +  M+   +R GR+ EA  L   MP++   A W
Sbjct: 612 HSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVW 671

Query: 268 NAMIAA---YVQRGQIEEAARLFIEMPERNPVSWTTMIDGY 305
            A+++A   Y      E AA   +E+   N  S+T + + Y
Sbjct: 672 VALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIY 712



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 15/164 (9%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F  N  I    KSG V+ A  +F  M Q+N V++ S+++ Y  +GR  +A ++F +M +
Sbjct: 534 LFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQK 593

Query: 75  RNL----VSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELE 125
             L    V++  ++    H+  V +    F+ M +     P    +A M+   +R G L+
Sbjct: 594 VXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLD 653

Query: 126 KARELFDLLPNKEDTACWNAMVAG---YAKI--GNYNEAKKLLD 164
           +A EL   +P K   A W A+++    YA +  G Y  A +LL+
Sbjct: 654 EAMELIRGMPMKPTPAVWVALLSACRVYANVELGEY-AANQLLE 696


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 190/590 (32%), Positives = 303/590 (51%), Gaps = 81/590 (13%)

Query: 221 AWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQI 280
           A + F  IP+ N+ SW  +L  Y+++G + E  R F+++P R+ V WN +I  Y   G +
Sbjct: 57  ARRVFDGIPQPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLV 116

Query: 281 EEAARLFIEM-----PERNPVSWTTMI--------------------------------- 302
             A + +  M          V+  TM+                                 
Sbjct: 117 GAAVKAYNTMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSP 176

Query: 303 --DGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW 360
             D Y ++  + +A+++   +  +N      ++ G +    +++A Q+F  +   D V W
Sbjct: 177 LLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGM-EKDSVSW 235

Query: 361 NVMIKGYAQCGRMDEAINLFRQM------------------------------------- 383
           + MIKG AQ G   EAI  FR+M                                     
Sbjct: 236 SAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIR 295

Query: 384 --VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALK 441
             +   I   + +I  Y + + +  A  +F+ M K++N VSW A++ G+ Q     +A+K
Sbjct: 296 TNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRM-KQKNVVSWTAMVVGYGQTGRAGEAVK 354

Query: 442 IFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYA 501
           IF+ M + G   DH TL  A+SACA++++L+ G Q H  AI +G ++ + V NSL+T+Y 
Sbjct: 355 IFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYG 414

Query: 502 KCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIG 561
           KCG I ++  LF + +  D +SW ++++ YA  G A EAI+LF++MV  G+ PD VT  G
Sbjct: 415 KCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTG 474

Query: 562 VLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIK 621
           V+SACS  GLV+ G + FE M   Y I P   HY+CMIDL SR+GR++EA   + GM  +
Sbjct: 475 VISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFR 534

Query: 622 PNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVR 681
           P+A  W TLL ACR   N+++G+ A E L EL+P   + Y LLS+++A  G+WD V ++R
Sbjct: 535 PDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLR 594

Query: 682 VSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
             M+    +K+PG SWI+ K ++H+F + D     + +I   L+ L  +I
Sbjct: 595 RGMKEKNVRKEPGQSWIKWKGKLHSFSADDESSPYSDQIYAKLEELYQKI 644



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 128/532 (24%), Positives = 243/532 (45%), Gaps = 65/532 (12%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKV 93
           A ++F  + Q N  ++N+++ AY+K+G +++  + FE++P R+ V+WN +I GY  +  V
Sbjct: 57  ARRVFDGIPQPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLV 116

Query: 94  KEARELFDKM---FRPDLFSWAL--MITCYTRKGELEKARELFDL---LPNKEDTACWNA 145
             A + ++ M   F  +L    L  M+   +  G +   +++      L  +      + 
Sbjct: 117 GAAVKAYNTMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSP 176

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW 205
           ++  Y+K+G  ++AKK+   +  +N V +N+++ G    G +  A + F  M E+D VSW
Sbjct: 177 LLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGM-EKDSVSW 235

Query: 206 NLMLDGYVELDDLDSAWKFFQKI----------PEQNVVSWVTMLSGYARNGRMLEARRL 255
           + M+ G  +      A + F+++          P  +V+     L G   +GR + A  +
Sbjct: 236 SAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGL-GAINDGRQIHACII 294

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR 315
              +   ++   +A+I  Y +   +  A  +F  M ++N VSWT M+ GY +  +  EA 
Sbjct: 295 RTNLQ-DHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAV 353

Query: 316 RLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIGT----HDVVCWNVMIKGY 367
           ++   M    I          IS       ++E +Q   K  T    H +   N ++  Y
Sbjct: 354 KIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLY 413

Query: 368 AQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
            +CG +D++  LF +M  +D V+W  M++ YAQ  +  +A+++F++              
Sbjct: 414 GKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDK-------------- 459

Query: 428 SGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS-GY 486
                             M Q G K D  TL   +SAC+    ++ G++   L I   G 
Sbjct: 460 ------------------MVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGI 501

Query: 487 VNDLFVGNSLITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAGYAINGN 536
           V      + +I ++++ GRI+ A + F +  P   D I W +L++     GN
Sbjct: 502 VPSNGHYSCMIDLFSRSGRIEEA-MGFINGMPFRPDAIGWTTLLSACRNKGN 552



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 189/404 (46%), Gaps = 47/404 (11%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           SY+   +  +    K G + +A K+F  +  +NTV YN+++      G + DA +LF  M
Sbjct: 169 SYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGM 228

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKAR 128
            +++ VSW++MI G   N   KEA E F +M     + D + +  ++      G +   R
Sbjct: 229 -EKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGR 287

Query: 129 ELFDLL--PNKED-TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
           ++   +   N +D     +A++  Y K    + AK + D M  KN+VSW +M+ GY + G
Sbjct: 288 QIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTG 347

Query: 186 EMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT--- 238
               A K F  M+    + D  +    +     +  L+   +F  K     ++ ++T   
Sbjct: 348 RAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSN 407

Query: 239 -MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE----R 293
            +++ Y + G + ++ RLF++M +R+ V+W AM++AY Q G+  EA +LF +M +     
Sbjct: 408 SLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKP 467

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG 353
           + V+ T +I    R   +++ +R  +            MI+ Y           I    G
Sbjct: 468 DGVTLTGVISACSRAGLVEKGQRYFE-----------LMINEY----------GIVPSNG 506

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIA 396
                 ++ MI  +++ GR++EA+     M    D + W T+++
Sbjct: 507 H-----YSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLS 545



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 117/494 (23%), Positives = 229/494 (46%), Gaps = 38/494 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F+ N  +    KSG + E  + F ++  ++ VT+N +I  Y+ +G V  A K +  M +
Sbjct: 69  LFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMK 128

Query: 75  ---RNL--VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWAL----MITCYTRKGELE 125
               NL  V+  +M+     N  V   +++  ++ +    S+ L    ++  Y++ G + 
Sbjct: 129 DFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCIS 188

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
            A+++F  L ++ +T  +N ++ G    G   +A +L   M  K+ VSW++M+ G  +NG
Sbjct: 189 DAKKVFYGLDDR-NTVMYNTLMGGLLACGMIEDALQLFRGM-EKDSVSWSAMIKGLAQNG 246

Query: 186 EMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV---- 237
               A + F  M+    + D   +  +L     L  ++   +    I   N+   +    
Sbjct: 247 MEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGS 306

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER--NP 295
            ++  Y +   +  A+ +FD+M  +NVV+W AM+  Y Q G+  EA ++F++M     +P
Sbjct: 307 ALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDP 366

Query: 296 VSWT--TMIDGYVRIAKLDEARRLLDQMPYKN----IAAQTAMISGYVQNKRMDEANQIF 349
             +T    I     I+ L+E  +   +         I    ++++ Y +   +D++ ++F
Sbjct: 367 DHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLF 426

Query: 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN----KDIVTWNTMIAGYAQIRQMD 405
           +++   D V W  M+  YAQ GR  EAI LF +MV      D VT   +I+  ++   ++
Sbjct: 427 NEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVE 486

Query: 406 DAVKIFE----EMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
              + FE    E G   +   ++ +I  F ++    +A+     M         +TL   
Sbjct: 487 KGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTL--- 543

Query: 462 LSACAHLAALQLGR 475
           LSAC +   L++G+
Sbjct: 544 LSACRNKGNLEIGK 557



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 155/382 (40%), Gaps = 96/382 (25%)

Query: 317 LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
           ++  +P+        ++  Y   +    A ++FD I   ++  WN ++  Y++ G + E 
Sbjct: 29  IIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNLFSWNNLLLAYSKSGHLSEM 88

Query: 377 INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
              F ++ ++D VTWN +I GY+    +  AVK            ++N ++  F  N   
Sbjct: 89  ERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVK------------AYNTMMKDFSSNLTR 136

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSL 496
           +  + +  L +  G                    + LG+QIH   IK G+ + L VG+ L
Sbjct: 137 VTLMTMLKLSSSNGH-------------------VSLGKQIHGQVIKLGFESYLLVGSPL 177

Query: 497 ITMYAK-------------------------------CGRIQNAELLFKDADPVDVISWN 525
           + MY+K                               CG I++A  LF+  +  D +SW+
Sbjct: 178 LDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEK-DSVSWS 236

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMT-- 583
           ++I G A NG   EAI+ F EM +EG+  D   F  VL AC  +G ++ G ++  C+   
Sbjct: 237 AMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRT 296

Query: 584 ----EVYAIEPLVE--------HYA----------------CMIDLLSRAGRLDEAFEMV 615
                +Y    L++        HYA                 M+    + GR  EA ++ 
Sbjct: 297 NLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIF 356

Query: 616 KGMK---IKPNAGIWGTLLGAC 634
             M+   I P+    G  + AC
Sbjct: 357 LDMQRSGIDPDHYTLGQAISAC 378



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 115/264 (43%), Gaps = 53/264 (20%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKN------------------------------------ 45
           +   G++GR  EA+KIF  M +                                      
Sbjct: 340 VVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGL 399

Query: 46  ----TVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFD 101
               TV+ NS+++ Y K G ++D+ +LF +M  R+ VSW +M++ Y    +  EA +LFD
Sbjct: 400 IHYITVS-NSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFD 458

Query: 102 KM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNK----EDTACWNAMVAGYAKI 153
           KM     +PD  +   +I+  +R G +EK +  F+L+ N+         ++ M+  +++ 
Sbjct: 459 KMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRS 518

Query: 154 GNYNEAKKLLDAMPSK-NIVSWNSMLSGYTKNGEMHLASKFFEAMEERD---VVSWNLML 209
           G   EA   ++ MP + + + W ++LS     G + +     E++ E D      + L+ 
Sbjct: 519 GRIEEAMGFINGMPFRPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLS 578

Query: 210 DGYVELDDLDSAWKFFQKIPEQNV 233
             Y      D   +  + + E+NV
Sbjct: 579 SIYASKGKWDCVAQLRRGMKEKNV 602



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 101/202 (50%), Gaps = 14/202 (6%)

Query: 14  YVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP 73
           Y+   N  +T  GK G ++++ ++F++M+ ++ V++ +M+SAYA+ GR  +A +LF++M 
Sbjct: 402 YITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMV 461

Query: 74  QRNL----VSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGEL 124
           Q  L    V+   +I+       V++ +  F+ M       P    ++ MI  ++R G +
Sbjct: 462 QLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRI 521

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYN----EAKKLLDAMPSKNIVSWNSMLSG 180
           E+A    + +P + D   W  +++     GN       A+ L++  P  +   +  + S 
Sbjct: 522 EEAMGFINGMPFRPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDP-HHPAGYTLLSSI 580

Query: 181 YTKNGEMHLASKFFEAMEERDV 202
           Y   G+    ++    M+E++V
Sbjct: 581 YASKGKWDCVAQLRRGMKEKNV 602


>gi|449456661|ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 793

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 224/762 (29%), Positives = 377/762 (49%), Gaps = 89/762 (11%)

Query: 58  KNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM------FRPDLFSW 111
           + G+++ AR+LF+ +P+ + V WN++I G + N+   EA   +  M       + D +++
Sbjct: 16  QEGQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTY 75

Query: 112 A--LMITCYTRKGELEKA-------------RELFDLLPNK----EDTACWNAMVAGYAK 152
           +  L     TR   + KA             R +++ L N       T     MV+GY++
Sbjct: 76  SSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSR 135

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLM 208
               +  +K+ D M  + +V+WN++++ Y +      A K F  M +  +    VS+  +
Sbjct: 136 C---DLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNV 192

Query: 209 LDGYVELDDLDSA---WKFFQKIPEQNVVSWVTMLSG---YARNGRMLEARRLFDQMPIR 262
              +  L D  +A        K+  + V     + S    YA  G +  A+++FD    R
Sbjct: 193 FPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLER 252

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPER-----NPVSWTTMIDGYVRIAKLDEARRL 317
           N   WN MI+A+VQ     E  +LF +  E      + V+  + I     + K + A +L
Sbjct: 253 NTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQL 312

Query: 318 ----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRM 373
               +  +    +    A+I+ Y +   +D + +IFD +   DVV WN MI  + Q G  
Sbjct: 313 HAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLN 372

Query: 374 DEAINLFRQMVNKDI----VTWNTMIAGYAQIRQMD------------------------ 405
           DEA+ LF +M  +D+    VT   +++  + +R  D                        
Sbjct: 373 DEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMDSYLI 432

Query: 406 ----------DAVKIFEE-MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
                      A  +FE+     R+  +WN+++SG+ QN     A  I   M  +    +
Sbjct: 433 DMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPN 492

Query: 455 HSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
             TLA  L AC     +  G+Q+H  +I++    ++FV  +LI MY+K G I +AE +F 
Sbjct: 493 VVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFS 552

Query: 515 DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574
            A+   +++++++I GY  +G    A+ +F  M   G+ PD VT + VLSACS+ GLVD 
Sbjct: 553 KANEKSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDE 612

Query: 575 GLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNA-GIWGTLLGA 633
           GL++FE M  VY I+P  EH+ C+ D+L RAGR+D+A+E V G+  K N   IWG+LL A
Sbjct: 613 GLQIFESMRTVYNIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAA 672

Query: 634 CRMHQNIKLGRIAVEKLSELEP--QKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQK 691
           CR+H+  +LG++  +KL E+E    KT  + LLSN++AE   W+ V+ VR  M   G +K
Sbjct: 673 CRIHKQFELGKLVAKKLLEMEKINGKTGYHVLLSNIYAEERNWENVDIVRKQMRERGLKK 732

Query: 692 QPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           + G SWIE+   ++ F S D K  ++ +I + L+ L  ++++
Sbjct: 733 ETGSSWIEIAGYMNHFASKDRKHPQSDQIYSMLEELLMEMKH 774



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 130/514 (25%), Positives = 219/514 (42%), Gaps = 108/514 (21%)

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           ++ V  L    + G++  AR+LFD +P  + V WN +I   V     +EA   +  M   
Sbjct: 5   INLVHELCRLCQEGQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSS 64

Query: 294 NP------VSWTTMIDGYVRIAKL---------------DEARRLLDQM--PYKNIAAQT 330
           +P       ++++++        L               + +R + + +   Y   ++ T
Sbjct: 65  SPQVKCDSYTYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTT 124

Query: 331 A---MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN-- 385
               M+SGY    R D   ++FD +    VV WN +I  Y +  R  EA+  F  M+   
Sbjct: 125 PDGKMVSGY---SRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIG 181

Query: 386 ---------------------------------------KDIVTWNTMIAGYAQIRQMDD 406
                                                   D+   ++ I  YA++  ++ 
Sbjct: 182 IKPSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEF 241

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ-EGKKADHSTLACALSAC 465
           A K+F+     RNT  WN +IS F+QN F L+ +++F    + E    D  TL  A+SA 
Sbjct: 242 AKKVFDNC-LERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAA 300

Query: 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525
           +HL   +L  Q+H   IK+  V  + V N+LI MY++C  I  +  +F +    DV+SWN
Sbjct: 301 SHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWN 360

Query: 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS-----------HVGLVDG 574
           ++I+ +  NG   EA+ LF EM  + +  D VT   +LSA S           H  L+  
Sbjct: 361 TMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRN 420

Query: 575 GLKLFECM----TEVYAIEPLVE-----------------HYACMIDLLSRAGRLDEAFE 613
           G++ FE M     ++YA   L+E                  +  M+   ++ G +D+AF 
Sbjct: 421 GIQ-FEGMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFL 479

Query: 614 MVKGM---KIKPNAGIWGTLLGACRMHQNIKLGR 644
           +++ M   K+ PN     ++L AC     I  G+
Sbjct: 480 ILRQMLDQKVMPNVVTLASILPACNPSGYIDWGK 513



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 127/531 (23%), Positives = 218/531 (41%), Gaps = 134/531 (25%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           +T     M+S Y+   R +  RK+F+ M +R +V+WN++IA Y+  ++  EA + F  M 
Sbjct: 122 STTPDGKMVSGYS---RCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMM 178

Query: 104 ---FRPDLFSWALMITCYTRKGELEKARELFDLLPN-----KEDTACWNAMVAGYAKIGN 155
               +P   S+  +   ++  G+ + A  +  +L         D    ++ +  YA++G 
Sbjct: 179 KIGIKPSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGC 238

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNG-EMHLASKFFEAMEERD------------- 201
              AKK+ D    +N   WN+M+S + +N   +     FF+A+E  D             
Sbjct: 239 LEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAIS 298

Query: 202 --------------------------VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
                                     V   N ++  Y   + +D+++K F  +PE++VVS
Sbjct: 299 AASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVS 358

Query: 236 WVTMLSGYARNGRMLEARRLFDQMP----------------------------------I 261
           W TM+S + +NG   EA  LF +M                                   +
Sbjct: 359 WNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLL 418

Query: 262 RNVVAWNAM----IAAYVQRGQIEEAARLFIE--MPERNPVSWTTMIDGYVRIAKLDEA- 314
           RN + +  M    I  Y + G IE A  +F +    ER+  +W +M+ GY +   +D+A 
Sbjct: 419 RNGIQFEGMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAF 478

Query: 315 ---RRLLDQMPYKNIAAQTAMI-----SGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG 366
              R++LDQ    N+    +++     SGY+   +      I + +   +V     +I  
Sbjct: 479 LILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDL-DQNVFVATALIDM 537

Query: 367 YAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNAL 426
           Y++ G +  A N+F +   K IVT++TMI GY Q             MG+          
Sbjct: 538 YSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQ-----------HGMGE---------- 576

Query: 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI 477
                       AL +F  M + G + D  TL   LSAC++   +  G QI
Sbjct: 577 -----------SALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQI 616



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 113/481 (23%), Positives = 200/481 (41%), Gaps = 80/481 (16%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR-----NLVSWNSM 83
           G +E A K+F    ++NT  +N+MISA+ +N    +  +LF Q  +      + V+  S 
Sbjct: 237 GCLEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSA 296

Query: 84  IAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPNKED 139
           I+   H  K + A +L   + +      +     +I  Y+R   ++ + ++FD +P K D
Sbjct: 297 ISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEK-D 355

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSG--------------- 180
              WN M++ + + G  +EA  L   M  +++    V+  ++LS                
Sbjct: 356 VVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHG 415

Query: 181 -------------------YTKNGEMHLASKFFEA--MEERDVVSWNLMLDGYVELDDLD 219
                              Y K+G +  A   FE     ERD  +WN M+ GY +   +D
Sbjct: 416 YLLRNGIQFEGMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVD 475

Query: 220 SAWKFFQKIPEQ----NVVSWVTML-----SGYARNGRMLEARRLFDQMPIRNVVAWNAM 270
            A+   +++ +Q    NVV+  ++L     SGY   G+ L    + + +  +NV    A+
Sbjct: 476 QAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLD-QNVFVATAL 534

Query: 271 IAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ- 329
           I  Y + G I  A  +F +  E++ V+++TMI GY +    + A  +  +M    I    
Sbjct: 535 IDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDA 594

Query: 330 ---TAMISGYVQNKRMDEANQIFDKI--------GTHDVVCWNVMIKGYAQCGRMDEAIN 378
               A++S       +DE  QIF+ +         T    C   M+    + GR+D+A  
Sbjct: 595 VTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPSTEHFCCVADML---GRAGRVDKAYE 651

Query: 379 LFRQMVNKDIV--TWNTMIAG---YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433
               +  K  V   W +++A    + Q        K   EM K      ++ L+S     
Sbjct: 652 FVIGLGEKGNVMEIWGSLLAACRIHKQFELGKLVAKKLLEMEKINGKTGYHVLLSNIYAE 711

Query: 434 E 434
           E
Sbjct: 712 E 712



 Score = 47.0 bits (110), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 16/180 (8%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP- 73
           VF     I    KSG +  A  +FS+ ++K+ VTY++MI  Y ++G    A  +F +M  
Sbjct: 528 VFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGESALFMFHRMQK 587

Query: 74  ---QRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELE 125
              Q + V+  ++++   +   V E  ++F+ M      +P    +  +     R G ++
Sbjct: 588 SGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPSTEHFCCVADMLGRAGRVD 647

Query: 126 KARELFDLLPNKEDT-ACWNAMVAGYAKIGNYNE-----AKKLLDAMPSKNIVSWNSMLS 179
           KA E    L  K +    W +++A   +I    E     AKKLL+         ++ +LS
Sbjct: 648 KAYEFVIGLGEKGNVMEIWGSLLAA-CRIHKQFELGKLVAKKLLEMEKINGKTGYHVLLS 706


>gi|255584555|ref|XP_002533004.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527215|gb|EEF29379.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 519

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 171/457 (37%), Positives = 272/457 (59%), Gaps = 13/457 (2%)

Query: 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQN----KR 341
           LF EMPE + +S TT+I  + R  + +EA  L  +M   NI       +  + +    K 
Sbjct: 55  LFDEMPELDVLSVTTLIGRFARQHRYEEAMCLFSRMLLLNIKPNEFTFATVIHSSTGLKN 114

Query: 342 MDEANQIFD---KIGTHDVV-CWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAG 397
           +    Q+     K+G + +V   + M+  YA+    +EA N F  +   ++V++ T+I G
Sbjct: 115 IYLGKQLHARTMKMGLNTIVFVGSAMLDFYAKLCSFEEARNAFEDIQKPNVVSYTTLIHG 174

Query: 398 YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHST 457
           Y +  ++DDA+++F+EM   RN VSWNA++ GF Q   + +A+ +F+ M +EG   + ST
Sbjct: 175 YLKKGKIDDALQLFQEM-PERNVVSWNAMVGGFSQMGHNEEAVSLFIEMLREGFMPNQST 233

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD 517
             CA+++ A++A+L +G+  H  A+KS   +D+FV NSL++ YAKCG ++++ L+F +  
Sbjct: 234 FPCAITSAANMASLGMGKSFHACAVKSLCTSDVFVCNSLVSFYAKCGSMEDSLLVFNELP 293

Query: 518 PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLK 577
             + +SWN++I G+A NG   +A+  FE M   G+ P+ VT +G+L AC+H GLV+ G  
Sbjct: 294 DRNTVSWNAVICGFAQNGRGEDAVIFFERMRAAGLRPNSVTLLGLLCACNHAGLVEKGYM 353

Query: 578 LFECM--TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACR 635
            F  M   E   ++P  EHYACM+DLLSR GRL EA + +  +   P  G W  LLG C 
Sbjct: 354 YFNQMRQEEPGILKP--EHYACMVDLLSRFGRLKEAAKFLHDLPFDPGTGFWKALLGGCH 411

Query: 636 MHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGC 695
           +H N +L  +A +K+  L+P+  S Y +LSN ++ AGRW +V  +R  M+  G ++ PGC
Sbjct: 412 IHSNAELSDLAAQKILALDPEDVSSYVMLSNAYSAAGRWQQVSTIRREMKEKGLKRIPGC 471

Query: 696 SWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           SWIEV+++IH FL+ D    +  EI + LK    Q+R
Sbjct: 472 SWIEVRSKIHVFLNSDKNHHQKEEIYSFLKFCVEQLR 508



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 134/271 (49%), Gaps = 17/271 (6%)

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKN 184
           ELFD +P + D      ++  +A+   Y EA  L   M   NI     ++ +++   T  
Sbjct: 54  ELFDEMP-ELDVLSVTTLIGRFARQHRYEEAMCLFSRMLLLNIKPNEFTFATVIHSSTGL 112

Query: 185 GEMHLASKFFEAMEERD----VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
             ++L  +      +      V   + MLD Y +L   + A   F+ I + NVVS+ T++
Sbjct: 113 KNIYLGKQLHARTMKMGLNTIVFVGSAMLDFYAKLCSFEEARNAFEDIQKPNVVSYTTLI 172

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPV 296
            GY + G++ +A +LF +MP RNVV+WNAM+  + Q G  EEA  LFIEM       N  
Sbjct: 173 HGYLKKGKIDDALQLFQEMPERNVVSWNAMVGGFSQMGHNEEAVSLFIEMLREGFMPNQS 232

Query: 297 SWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
           ++   I     +A L   +      +  +   ++    +++S Y +   M+++  +F+++
Sbjct: 233 TFPCAITSAANMASLGMGKSFHACAVKSLCTSDVFVCNSLVSFYAKCGSMEDSLLVFNEL 292

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
              + V WN +I G+AQ GR ++A+  F +M
Sbjct: 293 PDRNTVSWNAVICGFAQNGRGEDAVIFFERM 323



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 136/290 (46%), Gaps = 23/290 (7%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
           MK  L +I   GS + +   K+         EEA   F  + + N V+Y ++I  Y K G
Sbjct: 126 MKMGLNTIVFVGSAMLDFYAKLCSF------EEARNAFEDIQKPNVVSYTTLIHGYLKKG 179

Query: 61  RVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMIT 116
           +++DA +LF++MP+RN+VSWN+M+ G+      +EA  LF +M R    P+  ++   IT
Sbjct: 180 KIDDALQLFQEMPERNVVSWNAMVGGFSQMGHNEEAVSLFIEMLREGFMPNQSTFPCAIT 239

Query: 117 CYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS 173
                  L   +             D    N++V+ YAK G+  ++  + + +P +N VS
Sbjct: 240 SAANMASLGMGKSFHACAVKSLCTSDVFVCNSLVSFYAKCGSMEDSLLVFNELPDRNTVS 299

Query: 174 WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV----ELDDLDSAWKFFQKIP 229
           WN+++ G+ +NG    A  FFE M    +   ++ L G +        ++  + +F ++ 
Sbjct: 300 WNAVICGFAQNGRGEDAVIFFERMRAAGLRPNSVTLLGLLCACNHAGLVEKGYMYFNQMR 359

Query: 230 EQ-----NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA-WNAMIAA 273
           ++         +  M+   +R GR+ EA +    +P       W A++  
Sbjct: 360 QEEPGILKPEHYACMVDLLSRFGRLKEAAKFLHDLPFDPGTGFWKALLGG 409



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 137/315 (43%), Gaps = 71/315 (22%)

Query: 64  DARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYT 119
           D  +LF++MP+ +++S  ++I  +    + +EA  LF +M     +P+ F++A +I   T
Sbjct: 51  DVDELFDEMPELDVLSVTTLIGRFARQHRYEEAMCLFSRMLLLNIKPNEFTFATVIHSST 110

Query: 120 RKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLS 179
               +   ++L               M  G   I                 +   ++ML 
Sbjct: 111 GLKNIYLGKQLHA-----------RTMKMGLNTI-----------------VFVGSAMLD 142

Query: 180 GYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTM 239
            Y K      A   FE +++ +VVS+  ++ GY++   +D A + FQ++PE+NVVSW  M
Sbjct: 143 FYAKLCSFEEARNAFEDIQKPNVVSYTTLIHGYLKKGKIDDALQLFQEMPERNVVSWNAM 202

Query: 240 LSGYARNGRMLEARRLFDQM------------P--------------------------- 260
           + G+++ G   EA  LF +M            P                           
Sbjct: 203 VGGFSQMGHNEEAVSLFIEMLREGFMPNQSTFPCAITSAANMASLGMGKSFHACAVKSLC 262

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
             +V   N++++ Y + G +E++  +F E+P+RN VSW  +I G+ +  + ++A    ++
Sbjct: 263 TSDVFVCNSLVSFYAKCGSMEDSLLVFNELPDRNTVSWNAVICGFAQNGRGEDAVIFFER 322

Query: 321 MPYKNIAAQTAMISG 335
           M    +   +  + G
Sbjct: 323 MRAAGLRPNSVTLLG 337


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  329 bits (843), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 190/545 (34%), Positives = 294/545 (53%), Gaps = 18/545 (3%)

Query: 204 SWNLMLDGYVELDDLDSAWKFFQK-------IPEQNVVSWV-TMLSGYARNGRMLEARRL 255
           SWN+ + GYVE ++  +A   ++        IP+      +  + +G++ +    E    
Sbjct: 121 SWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGH 180

Query: 256 FDQMPI-RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
             Q+    ++   NA+I   V  G++  A +LF E   R+ VSW ++I+GYVR    DEA
Sbjct: 181 VIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEA 240

Query: 315 RRLLDQMPYKNIAAQTAMISGYVQNKRMDE-------ANQIFDKIGTH-DVVCWNVMIKG 366
             L  +M   N+      + G V      E        +Q  +++G +  V   N ++  
Sbjct: 241 FDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDM 300

Query: 367 YAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNAL 426
           Y +C  ++ A  LF  M  K +V+W TM+ GYA+   ++ AV++F EM   ++ V WNAL
Sbjct: 301 YIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEM-PEKDVVLWNAL 359

Query: 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
           I GF+Q +   +AL +F  M       D  T+   LSAC+ L AL +G  +HH   K   
Sbjct: 360 IGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNL 419

Query: 487 VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEE 546
             ++ +G +L+ MYAKCG I+ A  +F++    + ++W ++I G A++G    AI  F E
Sbjct: 420 TMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSE 479

Query: 547 MVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAG 606
           M+  G+ PD +TFIGVLSAC H GLVD G   F  MT  Y I P ++HY+C++DLL RAG
Sbjct: 480 MISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAG 539

Query: 607 RLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSN 666
            L+EA E+++ M  +P+A +WG L    R+H N+ +G  A  KL EL+P     Y LL+N
Sbjct: 540 FLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIYVLLAN 599

Query: 667 MHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKT 726
           M+ +A  W++  KVR  ME  G +K PGCS IE+   ++ F+  D    ++ +I   L  
Sbjct: 600 MYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVYDFIIRDKSHPQSEKIYECLTR 659

Query: 727 LAAQI 731
           L  QI
Sbjct: 660 LTRQI 664



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 131/523 (25%), Positives = 213/523 (40%), Gaps = 112/523 (21%)

Query: 67  KLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALM------- 114
           K+       N  SWN  I GY+ ++    A  L+  M R     PD +++ L+       
Sbjct: 109 KILNNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGF 168

Query: 115 ----------------------------ITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
                                       I      GEL  AR+LFD      D   WN++
Sbjct: 169 SLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFD-ESCVRDLVSWNSI 227

Query: 147 VAGYAKIGNYNEAKKL------LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER 200
           + GY + G  +EA  L      L+ MP +  V+   ++S   +   + L  K  +++EE 
Sbjct: 228 INGYVRCGLADEAFDLYYKMGELNVMPDE--VTMIGVVSASAQLENLALGRKLHQSIEEM 285

Query: 201 ----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF 256
                V   N ++D Y++  ++++A   F+ + ++ VVSW TM+ GYA+ G +  A RLF
Sbjct: 286 GLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLF 345

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
           ++MP ++VV WNA+I  +VQ  + +EA  LF EM        +   D    +  L    +
Sbjct: 346 NEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQAS-----SVAPDKITVVNCLSACSQ 400

Query: 317 LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
           L             A+  G   +  +D+ N       T +V     ++  YA+CG + +A
Sbjct: 401 L------------GALDVGIWMHHYVDKHNL------TMNVALGTALVDMYAKCGNIKKA 442

Query: 377 INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
           I +F +M  ++ +TW  +I G A   Q   A+  F E                       
Sbjct: 443 IQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSE----------------------- 479

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ-IHHLAIKSGYVNDLFVGNS 495
                    M   G   D  T    LSAC H   +  GR   + +  K G    L   + 
Sbjct: 480 ---------MISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSC 530

Query: 496 LITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAINGN 536
           L+ +  + G ++ AE L +    +P D + W +L  G  I+GN
Sbjct: 531 LVDLLGRAGFLEEAEELIRSMPFEP-DAVVWGALFFGSRIHGN 572



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 170/375 (45%), Gaps = 25/375 (6%)

Query: 48  TYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM---- 103
            +N++I      G +  ARKLF++   R+LVSWNS+I GY+      EA +L+ KM    
Sbjct: 192 VHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELN 251

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAK 160
             PD  +   +++   +   L   R+L   +            NA++  Y K  N   AK
Sbjct: 252 VMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAK 311

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
            L + M  K +VSW +M+ GY K G +  A + F  M E+DVV WN ++ G+V+      
Sbjct: 312 ILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKE 371

Query: 221 AWKFFQKIPEQNV----VSWVTMLSGYARNGRM---LEARRLFDQMPIR-NVVAWNAMIA 272
           A   F ++   +V    ++ V  LS  ++ G +   +      D+  +  NV    A++ 
Sbjct: 372 ALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVD 431

Query: 273 AYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM--------PYK 324
            Y + G I++A ++F EMP RN ++WT +I G     +   A     +M           
Sbjct: 432 MYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEIT 491

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
            I   +A   G + ++  D   Q+  K G +  +  ++ ++    + G ++EA  L R M
Sbjct: 492 FIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSM 551

Query: 384 -VNKDIVTWNTMIAG 397
               D V W  +  G
Sbjct: 552 PFEPDAVVWGALFFG 566



 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 148/320 (46%), Gaps = 20/320 (6%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K   +E A  +F  M++K  V++ +M+  YAK G +  A +LF +MP++++V WN++I G
Sbjct: 303 KCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGG 362

Query: 87  YLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT-- 140
           ++   + KEA  LF +M      PD  +    ++  ++ G L+    +   +     T  
Sbjct: 363 FVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMN 422

Query: 141 -ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE 199
            A   A+V  YAK GN  +A ++ + MP +N ++W +++ G   +G+ H A  +F  M  
Sbjct: 423 VALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMIS 482

Query: 200 ----RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRML 250
                D +++  +L        +D    +F ++  +  +S     +  ++    R G + 
Sbjct: 483 IGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLE 542

Query: 251 EARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTTMIDGYV 306
           EA  L   MP   + V W A+       G +   E AA   +E+   +   +  + + Y 
Sbjct: 543 EAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIYVLLANMYG 602

Query: 307 RIAKLDEARRLLDQMPYKNI 326
                ++AR++   M  + +
Sbjct: 603 DANMWEQARKVRKMMEERGV 622



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 92/213 (43%), Gaps = 31/213 (14%)

Query: 373 MDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
           +D    +     N +  +WN  I GY +     +AV ++  M ++ + +           
Sbjct: 104 LDYCDKILNNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAI----------- 152

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
                                D+ T       CA  +      +I    I+ G+ +DLFV
Sbjct: 153 --------------------PDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFV 192

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
            N++I +   CG +  A  LF ++   D++SWNS+I GY   G A EA  L+ +M    V
Sbjct: 193 HNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNV 252

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585
            PD VT IGV+SA + +  +  G KL + + E+
Sbjct: 253 MPDEVTMIGVVSASAQLENLALGRKLHQSIEEM 285



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 95/229 (41%), Gaps = 41/229 (17%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYA--KCGRIQNAELLFKDADPV 519
           L AC  +A +   ++IH   I +G ++D F  + L+   A  +   +   + +  +A  +
Sbjct: 61  LEACTSMAKM---KEIHAQMISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAANL 117

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA-PDPVTFIGVLSACSHVGL------- 571
           +  SWN  I GY  + N   A+ L+  M+ +G A PD  T+  +   C+   L       
Sbjct: 118 NXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEI 177

Query: 572 --------VDGGLKLFECMT-------EVYAIEPLVEHYACMIDLLS---------RAGR 607
                    D  L +   +        E+ A   L +  +C+ DL+S         R G 
Sbjct: 178 LGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDE-SCVRDLVSWNSIINGYVRCGL 236

Query: 608 LDEAFEMVKGM---KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653
            DEAF++   M    + P+      ++ A    +N+ LGR   + + E+
Sbjct: 237 ADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEM 285


>gi|326530660|dbj|BAK01128.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 613

 Score =  328 bits (842), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 166/447 (37%), Positives = 264/447 (59%), Gaps = 4/447 (0%)

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
           N+++A Y+  G    A RLF ++P  + V+W T++   +R   L  AR L DQMP +++ 
Sbjct: 140 NSLLARYLAHGSHASARRLFADVPRPDAVTWNTLLRACLRSGLLPSARHLFDQMPVRDLV 199

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD 387
           +  +M+SG+     MD A Q+FD +   DVV WN M+ G+ +CG M+EA  +F  M  +D
Sbjct: 200 SYNSMLSGHAAAGDMDGARQLFDGMPERDVVSWNSMLAGHTRCGDMEEARRMFDAMPERD 259

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMT 447
           +V+WN+M+ GYAQ   +  A  +F+ M  RR+TVSWN +++ + + +   + L++F  M 
Sbjct: 260 VVSWNSMLDGYAQAGDVLAARAVFDGM-PRRSTVSWNVVLALYARVKNWRECLRLFDAMM 318

Query: 448 QEGKK-ADHSTLACALSACAHLAALQLGRQIHHLAIK--SGYVNDLFVGNSLITMYAKCG 504
             G    +  T    L+AC  L  L+ G+++H L  +     V D+ +  +L+TMYAKCG
Sbjct: 319 AVGAAVPNEKTFVSVLTACGSLGDLERGKRVHDLVRQRWETLVPDVLLLTALLTMYAKCG 378

Query: 505 RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLS 564
            ++ A ++F       V SWNS+I GY ++G + +A++LF EM   G  P+  TF+ VLS
Sbjct: 379 VMEAARVIFDSMGERSVPSWNSMIIGYGLHGQSEKALELFLEMERTGPRPNETTFVCVLS 438

Query: 565 ACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNA 624
           +C+H GLV  G   F+ M  +Y +EP  EH+ CM+DLL RAG L ++  +V+ ++ K + 
Sbjct: 439 SCAHGGLVLEGWWCFDRMVRLYGVEPKAEHFGCMMDLLGRAGLLTDSDTLVQNLQEKASP 498

Query: 625 GIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSM 684
            +WG ++ A R     +LG    +KL E+ P++   Y LLSN++A  GRW++VEKVR  M
Sbjct: 499 ALWGAMVSASRAQNGSRLGEFVGKKLIEMRPKEVGPYVLLSNIYAGEGRWNDVEKVREMM 558

Query: 685 EGSGAQKQPGCSWIEVKNQIHTFLSGD 711
           +G+GA+K  G S +      H   + D
Sbjct: 559 KGNGAEKDVGLSLVGSSEPEHRIGTED 585



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 170/336 (50%), Gaps = 45/336 (13%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N+++A Y   G++  A++L   +P  + V+WN++L    ++G +  A   F+ M  RD+V
Sbjct: 140 NSLLARYLAHGSHASARRLFADVPRPDAVTWNTLLRACLRSGLLPSARHLFDQMPVRDLV 199

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRN 263
           S+N ML G+    D+D A + F  +PE++VVSW +ML+G+ R G M EARR+FD MP R+
Sbjct: 200 SYNSMLSGHAAAGDMDGARQLFDGMPERDVVSWNSMLAGHTRCGDMEEARRMFDAMPERD 259

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM-- 321
           VV+WN+M+  Y Q G +  A  +F  MP R+ VSW  ++  Y R+    E  RL D M  
Sbjct: 260 VVSWNSMLDGYAQAGDVLAARAVFDGMPRRSTVSWNVVLALYARVKNWRECLRLFDAMMA 319

Query: 322 ---------PYKNIAAQTAMISGYVQNKRM-DEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
                     + ++      +    + KR+ D   Q ++ +   DV+    ++  YA+CG
Sbjct: 320 VGAAVPNEKTFVSVLTACGSLGDLERGKRVHDLVRQRWETL-VPDVLLLTALLTMYAKCG 378

Query: 372 RMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFL 431
            M+ A  +F  M  + + +WN+MI GY    Q + A+++F E                  
Sbjct: 379 VMEAARVIFDSMGERSVPSWNSMIIGYGLHGQSEKALELFLE------------------ 420

Query: 432 QNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
                         M + G + + +T  C LS+CAH
Sbjct: 421 --------------MERTGPRPNETTFVCVLSSCAH 442



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 98/281 (34%), Positives = 154/281 (54%), Gaps = 12/281 (4%)

Query: 114 MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS 173
           ++  Y   G    AR LF  +P + D   WN ++    + G    A+ L D MP +++VS
Sbjct: 142 LLARYLAHGSHASARRLFADVP-RPDAVTWNTLLRACLRSGLLPSARHLFDQMPVRDLVS 200

Query: 174 WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV 233
           +NSMLSG+   G+M  A + F+ M ERDVVSWN ML G+    D++ A + F  +PE++V
Sbjct: 201 YNSMLSGHAAAGDMDGARQLFDGMPERDVVSWNSMLAGHTRCGDMEEARRMFDAMPERDV 260

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM--- 290
           VSW +ML GYA+ G +L AR +FD MP R+ V+WN ++A Y +     E  RLF  M   
Sbjct: 261 VSWNSMLDGYAQAGDVLAARAVFDGMPRRSTVSWNVVLALYARVKNWRECLRLFDAMMAV 320

Query: 291 --PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK------NIAAQTAMISGYVQNKRM 342
                N  ++ +++     +  L+  +R+ D +  +      ++   TA+++ Y +   M
Sbjct: 321 GAAVPNEKTFVSVLTACGSLGDLERGKRVHDLVRQRWETLVPDVLLLTALLTMYAKCGVM 380

Query: 343 DEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
           + A  IFD +G   V  WN MI GY   G+ ++A+ LF +M
Sbjct: 381 EAARVIFDSMGERSVPSWNSMIIGYGLHGQSEKALELFLEM 421



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 98/291 (33%), Positives = 161/291 (55%), Gaps = 18/291 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  + +    G    A ++F+ + + + VT+N+++ A  ++G +  AR LF+QMP R+LV
Sbjct: 140 NSLLARYLAHGSHASARRLFADVPRPDAVTWNTLLRACLRSGLLPSARHLFDQMPVRDLV 199

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           S+NSM++G+     +  AR+LFD M   D+ SW  M+  +TR G++E+AR +FD +P + 
Sbjct: 200 SYNSMLSGHAAAGDMDGARQLFDGMPERDVVSWNSMLAGHTRCGDMEEARRMFDAMPER- 258

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM- 197
           D   WN+M+ GYA+ G+   A+ + D MP ++ VSWN +L+ Y +        + F+AM 
Sbjct: 259 DVVSWNSMLDGYAQAGDVLAARAVFDGMPRRSTVSWNVVLALYARVKNWRECLRLFDAMM 318

Query: 198 -------EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ------NVVSWVTMLSGYA 244
                   E+  VS   +L     L DL+   +    + ++      +V+    +L+ YA
Sbjct: 319 AVGAAVPNEKTFVS---VLTACGSLGDLERGKRVHDLVRQRWETLVPDVLLLTALLTMYA 375

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
           + G M  AR +FD M  R+V +WN+MI  Y   GQ E+A  LF+EM    P
Sbjct: 376 KCGVMEAARVIFDSMGERSVPSWNSMIIGYGLHGQSEKALELFLEMERTGP 426



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/279 (33%), Positives = 144/279 (51%), Gaps = 47/279 (16%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           +SG +  A  +F QM  ++ V+YNSM+S +A  G ++ AR+LF+ MP+R++VSWNSM+AG
Sbjct: 179 RSGLLPSARHLFDQMPVRDLVSYNSMLSGHAAAGDMDGARQLFDGMPERDVVSWNSMLAG 238

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
           +     ++EAR +FD M   D+ SW  M+  Y + G++  AR +FD +P +  T  WN +
Sbjct: 239 HTRCGDMEEARRMFDAMPERDVVSWNSMLDGYAQAGDVLAARAVFDGMP-RRSTVSWNVV 297

Query: 147 VAGYAKIGNYNEAKKLLDAM-------PS-KNIVS------------------------W 174
           +A YA++ N+ E  +L DAM       P+ K  VS                        W
Sbjct: 298 LALYARVKNWRECLRLFDAMMAVGAAVPNEKTFVSVLTACGSLGDLERGKRVHDLVRQRW 357

Query: 175 ----------NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKF 224
                      ++L+ Y K G M  A   F++M ER V SWN M+ GY      + A + 
Sbjct: 358 ETLVPDVLLLTALLTMYAKCGVMEAARVIFDSMGERSVPSWNSMIIGYGLHGQSEKALEL 417

Query: 225 FQKI----PEQNVVSWVTMLSGYARNGRMLEARRLFDQM 259
           F ++    P  N  ++V +LS  A  G +LE    FD+M
Sbjct: 418 FLEMERTGPRPNETTFVCVLSSCAHGGLVLEGWWCFDRM 456



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 100/220 (45%), Gaps = 14/220 (6%)

Query: 471 LQLGRQIHHLAIKSGYVN-DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
           L     +H LA++SG++  DL + NSL+  Y   G   +A  LF D    D ++WN+L+ 
Sbjct: 116 LPAASSLHALAVRSGHLPADLRLANSLLARYLAHGSHASARRLFADVPRPDAVTWNTLLR 175

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE 589
               +G    A  LF++M +     D V++  +LS  +  G +DG  +LF+ M E   + 
Sbjct: 176 ACLRSGLLPSARHLFDQMPVR----DLVSYNSMLSGHAAAGDMDGARQLFDGMPERDVVS 231

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649
                +  M+   +R G ++EA  M   M  + +   W ++L       ++   R   + 
Sbjct: 232 -----WNSMLAGHTRCGDMEEARRMFDAMPER-DVVSWNSMLDGYAQAGDVLAARAVFDG 285

Query: 650 LSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689
           +     + T  + ++  ++A    W E  ++  +M   GA
Sbjct: 286 MPR---RSTVSWNVVLALYARVKNWRECLRLFDAMMAVGA 322



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 105/257 (40%), Gaps = 61/257 (23%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQK------NTVTYNSMIS 54
           M A   ++ N+ ++V      +T  G  G +E   ++   + Q+      + +   ++++
Sbjct: 317 MMAVGAAVPNEKTFV----SVLTACGSLGDLERGKRVHDLVRQRWETLVPDVLLLTALLT 372

Query: 55  AYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEAREL--------------- 99
            YAK G +  AR +F+ M +R++ SWNSMI GY  + + ++A EL               
Sbjct: 373 MYAKCGVMEAARVIFDSMGERSVPSWNSMIIGYGLHGQSEKALELFLEMERTGPRPNETT 432

Query: 100 --------------------FDKMFR-----PDLFSWALMITCYTRKGELEKARELFDLL 134
                               FD+M R     P    +  M+    R G L  +  L   L
Sbjct: 433 FVCVLSSCAHGGLVLEGWWCFDRMVRLYGVEPKAEHFGCMMDLLGRAGLLTDSDTLVQNL 492

Query: 135 PNKEDTACWNAMVAGY-----AKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
             K   A W AMV+       +++G +   KKL++  P K +  +  + + Y   G  + 
Sbjct: 493 QEKASPALWGAMVSASRAQNGSRLGEF-VGKKLIEMRP-KEVGPYVLLSNIYAGEGRWND 550

Query: 190 ASKFFEAME----ERDV 202
             K  E M+    E+DV
Sbjct: 551 VEKVREMMKGNGAEKDV 567


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  328 bits (842), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 185/559 (33%), Positives = 307/559 (54%), Gaps = 18/559 (3%)

Query: 197 MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF 256
            + +D    N +L  Y +   L  A   F  + +++V SW T+LS YA+ G +     +F
Sbjct: 53  FQPKDSFIHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVF 112

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER--NPVSWTTM--IDGYVRIAKLD 312
           DQMP R+ V++N +IA +   G   +A ++ + M E    P  ++ +  +    ++  L 
Sbjct: 113 DQMPYRDSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLR 172

Query: 313 EARRLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
             +++  ++   ++   T    AM   Y +   +D+A  +FD +   +VV WN+MI GY 
Sbjct: 173 HGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYV 232

Query: 369 QCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
           + G  +E I+LF +M    +  D+VT + ++  Y +  ++DDA  +F ++ K+ + + W 
Sbjct: 233 KMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKK-DEICWT 291

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
            +I G+ QN    DA  +F  M +   K D  T++  +S+CA LA+L  G+ +H   +  
Sbjct: 292 TMIVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVM 351

Query: 485 GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLF 544
           G  N + V ++L+ MY KCG   +A ++F+     +VI+WN++I GYA NG   EA+ L+
Sbjct: 352 GIDNSMLVSSALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLY 411

Query: 545 EEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSR 604
           E M  E   PD +TF+GVLSAC +  +V  G K F+ ++E + I P ++HYACMI LL R
Sbjct: 412 ERMQQENFKPDNITFVGVLSACINADMVKEGQKYFDSISE-HGIAPTLDHYACMITLLGR 470

Query: 605 AGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALL 664
           +G +D+A ++++GM  +PN  IW TLL  C    ++K   +A   L EL+P+    Y +L
Sbjct: 471 SGSVDKAVDLIQGMPHEPNYRIWSTLLSVC-AKGDLKNAELAASHLFELDPRNAGPYIML 529

Query: 665 SNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI---C 721
           SN++A  GRW +V  VR  M+   A+K    SW+EV N++H F+S D       +I    
Sbjct: 530 SNLYAACGRWKDVAVVRSLMKEKNAKKFAAYSWVEVGNKVHRFVSEDHYHPEVGKIYGEL 589

Query: 722 NTLKTLAAQIRNTPLAVII 740
           N L ++  QI   P   I+
Sbjct: 590 NRLISILQQIGYNPDTNIV 608



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 128/450 (28%), Positives = 217/450 (48%), Gaps = 47/450 (10%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F  N+ +    K G++ +A  +F  M++++  ++N+++SAYAK G V +   +F+QMP R
Sbjct: 59  FIHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMPYR 118

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELF 131
           + VS+N++IA +  N    +A ++  +M    F+P         T Y+    L+   +L 
Sbjct: 119 DSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQP---------TQYSHVNALQACSQLL 169

Query: 132 DLLPNK------------EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLS 179
           DL   K            E+T   NAM   YAK G+ ++A+ L D M  KN+VSWN M+S
Sbjct: 170 DLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMIS 229

Query: 180 GYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
           GY K G  +     F  M+    + D+V+ + +L+ Y     +D A   F K+P+++ + 
Sbjct: 230 GYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEIC 289

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ---------RGQIEEAARL 286
           W TM+ GYA+NGR  +A  LF  M  RNV   +  I++ V           GQ+     +
Sbjct: 290 WTTMIVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVV 349

Query: 287 FIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEAN 346
            + +     VS + ++D Y +     +AR + + MP +N+    AMI GY QN ++ EA 
Sbjct: 350 VMGIDNSMLVS-SALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEAL 408

Query: 347 QIFDKIGTHDVVCWNVMIKG-YAQCGRMD---EAINLFRQMVNKDIVT----WNTMIAGY 398
            +++++   +    N+   G  + C   D   E    F  +    I      +  MI   
Sbjct: 409 TLYERMQQENFKPDNITFVGVLSACINADMVKEGQKYFDSISEHGIAPTLDHYACMITLL 468

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
            +   +D AV + + M    N   W+ L+S
Sbjct: 469 GRSGSVDKAVDLIQGMPHEPNYRIWSTLLS 498



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 125/454 (27%), Positives = 202/454 (44%), Gaps = 88/454 (19%)

Query: 143 WNAMVAGYAKIGNYNEAKKL-----LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
           +  +V   A+  ++ +AK+L     L+    K+    N +L  Y K G++  A   F+ M
Sbjct: 25  YTRLVLHCARANDFIQAKRLQSHMELNLFQPKDSFIHNQLLHLYAKFGKLSDAQNVFDNM 84

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG---------- 247
            +RDV SWN +L  Y ++  +++    F ++P ++ VS+ T+++ +A NG          
Sbjct: 85  TKRDVYSWNTLLSAYAKMGMVENLHVVFDQMPYRDSVSYNTLIACFASNGHSGKALKVLV 144

Query: 248 RMLE----------------ARRLFD-----QMPIRNVVA--------WNAMIAAYVQRG 278
           RM E                  +L D     Q+  R VVA         NAM   Y + G
Sbjct: 145 RMQEDGFQPTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCG 204

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMIS---- 334
            I++A  LF  M ++N VSW  MI GYV++   +E   L ++M    +      +S    
Sbjct: 205 DIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLN 264

Query: 335 GYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF----RQMVNKDIVT 390
            Y +  R+D+A  +F K+   D +CW  MI GYAQ GR ++A  LF    R+ V  D  T
Sbjct: 265 AYFRCGRVDDARNLFIKLPKKDEICWTTMIVGYAQNGREEDAWMLFGDMLRRNVKPDSYT 324

Query: 391 WNTMIAGYAQIRQMD-----------------------------------DAVKIFEEMG 415
            ++M++  A++  +                                    DA  IFE M 
Sbjct: 325 ISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSMLVSSALVDMYCKCGVTLDARVIFETM- 383

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
             RN ++WNA+I G+ QN   L+AL ++  M QE  K D+ T    LSAC +   ++ G+
Sbjct: 384 PIRNVITWNAMILGYAQNGQVLEALTLYERMQQENFKPDNITFVGVLSACINADMVKEGQ 443

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA 509
           +      + G    L     +IT+  + G +  A
Sbjct: 444 KYFDSISEHGIAPTLDHYACMITLLGRSGSVDKA 477



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 166/380 (43%), Gaps = 58/380 (15%)

Query: 8   IGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAK--------- 58
           + + G   F +N       K G +++A  +F  M  KN V++N MIS Y K         
Sbjct: 183 VADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIH 242

Query: 59  --------------------------NGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDK 92
                                      GRV+DAR LF ++P+++ + W +MI GY  N +
Sbjct: 243 LFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEICWTTMIVGYAQNGR 302

Query: 93  VKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFD---LLPNKEDTACWNA 145
            ++A  LF  M R    PD ++ + M++   +   L   + +     ++         +A
Sbjct: 303 EEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSMLVSSA 362

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----D 201
           +V  Y K G   +A+ + + MP +N+++WN+M+ GY +NG++  A   +E M++     D
Sbjct: 363 LVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYERMQQENFKPD 422

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS----WVTMLSGYARNGRMLEARRLFD 257
            +++  +L   +  D +    K+F  I E  +      +  M++   R+G + +A  L  
Sbjct: 423 NITFVGVLSACINADMVKEGQKYFDSISEHGIAPTLDHYACMITLLGRSGSVDKAVDLIQ 482

Query: 258 QMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDE 313
            MP   N   W+ +++    +G +   E AA    E+  RN   +  + + Y    +  +
Sbjct: 483 GMPHEPNYRIWSTLLSV-CAKGDLKNAELAASHLFELDPRNAGPYIMLSNLYAACGRWKD 541

Query: 314 ---ARRLLDQMPYKNIAAQT 330
               R L+ +   K  AA +
Sbjct: 542 VAVVRSLMKEKNAKKFAAYS 561



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 105/247 (42%), Gaps = 36/247 (14%)

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
           +Q  R   H+ +      D F+ N L+ +YAK G++ +A+ +F +    DV SWN+L++ 
Sbjct: 39  IQAKRLQSHMELNLFQPKDSFIHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLSA 98

Query: 531 Y-------------------------------AINGNATEAIKLFEEMVMEGVAPDPVTF 559
           Y                               A NG++ +A+K+   M  +G  P   + 
Sbjct: 99  YAKMGMVENLHVVFDQMPYRDSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSH 158

Query: 560 IGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMK 619
           +  L ACS +  +  G ++   +      E      A M D+ ++ G +D+A  +  GM 
Sbjct: 159 VNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNA-MTDMYAKCGDIDKARLLFDGM- 216

Query: 620 IKPNAGIWGTLL-GACRMHQNIKLGRIAVE-KLSELEPQKTSCYALLSNMHAEAGRWDEV 677
           I  N   W  ++ G  +M    +   +  E +LS L+P   +   +L N +   GR D+ 
Sbjct: 217 IDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVL-NAYFRCGRVDDA 275

Query: 678 EKVRVSM 684
             + + +
Sbjct: 276 RNLFIKL 282


>gi|218194084|gb|EEC76511.1| hypothetical protein OsI_14286 [Oryza sativa Indica Group]
          Length = 656

 Score =  328 bits (842), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 191/600 (31%), Positives = 316/600 (52%), Gaps = 33/600 (5%)

Query: 152 KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV----SWNL 207
           K G   +A  L D MP KN+V+W S++SG T+NG    A   F  M E  V     + N 
Sbjct: 60  KSGRLADALDLFDRMPRKNVVAWTSVMSGCTRNGRPEAALAMFADMVESGVAPNDFACNA 119

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVV--SWV--TMLSGYARNGRMLEARRLFDQMPIRN 263
            L    +L  L +  +             +W+   ++  Y+R G +  A+ +FD+M   +
Sbjct: 120 ALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPD 179

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLD 319
           VV + ++I+A+ + G+ E AA   I+M ++    N  + TT++    R+        L+ 
Sbjct: 180 VVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIK 239

Query: 320 QMPYKN--IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAI 377
           ++  ++  + + TA+I  Y +N+ +D        +                 CG +    
Sbjct: 240 KIGLRSQSVYSSTALIDFYSRNEGVDPNEFALSIV--------------LGACGSIGLGR 285

Query: 378 NLFRQMVNKDIVT----WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433
            L    +  D++T     N +++ Y +   +++   +  ++ +  + VSW   IS   QN
Sbjct: 286 QLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKI-ENPDLVSWTTAISANFQN 344

Query: 434 EFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG 493
            F   A+ +   M  EG   +    +  LS+CA +A+L  G Q H LA+K G  +++  G
Sbjct: 345 GFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTG 404

Query: 494 NSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA 553
           N+LI MY+KCG++ +A L F      DV SWNSLI G+A +G+A +A+++F +M   G+ 
Sbjct: 405 NALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIK 464

Query: 554 PDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFE 613
           PD  TF+GVL  C+H G+V+ G   F  M + Y+  P   HYACMID+L R GR DEA  
Sbjct: 465 PDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALR 524

Query: 614 MVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGR 673
           M+  M  +P+A IW TLL +C++H+N+ +G++A ++L EL  + ++ Y L+SN++A  G 
Sbjct: 525 MINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGE 584

Query: 674 WDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           W++  KVR  M+ +G +K  GCSWIE+ N++HTF S D     +  I   L  L A +++
Sbjct: 585 WEDARKVRRRMDETGVKKDAGCSWIEINNEVHTFASRDMSHPNSDSIYQMLGELVAVMQD 644



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 114/496 (22%), Positives = 215/496 (43%), Gaps = 72/496 (14%)

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
           +VV     L+   ++GR+ +A  LFD+MP +NVVAW ++++   + G+ E A  +F +M 
Sbjct: 47  DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGCTRNGRPEAALAMFADMV 106

Query: 292 ER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMD 343
           E     N  +    +     +  L    ++         A      + +I  Y +   + 
Sbjct: 107 ESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLP 166

Query: 344 EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA----INLFRQMVNKDIVTWNTMIAGYA 399
            A ++FD++ + DVV +  +I  + + G  + A    I + +Q +  +  T  T++    
Sbjct: 167 AAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACP 226

Query: 400 QIRQMDDAVKIFEEMGKRRNTV-SWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           ++        + +++G R  +V S  ALI  + +N               EG   +   L
Sbjct: 227 RVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRN---------------EGVDPNEFAL 271

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
           +  L AC    ++ LGRQ+H  AIK   + D+ V N+L++MY + G ++  E +    + 
Sbjct: 272 SIVLGAC---GSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIEN 328

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
            D++SW + I+    NG   +AI L  +M  EG  P+   F  VLS+C+ V  +D G++ 
Sbjct: 329 PDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQ- 387

Query: 579 FECMTEVYAIEPLVEHYACMIDLLSRAGRLD----------------------------- 609
           F C+      +  +     +I++ S+ G++                              
Sbjct: 388 FHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGD 447

Query: 610 -----EAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLG----RIAVEKLSELEPQKTSC 660
                E F  ++   IKP+   +  +L  C     ++ G    R+ +++ S   P  +  
Sbjct: 448 ANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYS-FTPAPSH- 505

Query: 661 YALLSNMHAEAGRWDE 676
           YA + +M    GR+DE
Sbjct: 506 YACMIDMLGRNGRFDE 521



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 131/568 (23%), Positives = 240/568 (42%), Gaps = 74/568 (13%)

Query: 20  KKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR---- 75
           K++ +L KSGR+ +A+ +F +M +KN V + S++S   +NGR   A  +F  M +     
Sbjct: 53  KRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGCTRNGRPEAALAMFADMVESGVAP 112

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRKGELEKARELF 131
           N  + N+ +        ++   ++     R     D +  + +I  Y+R G L  A+E+F
Sbjct: 113 NDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVF 172

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------PSKNIVSWNSMLSGYTKNG 185
           D + +  D   + ++++ + + G +  A + L  M      P+++ ++            
Sbjct: 173 DRM-DSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQ 231

Query: 186 EMH--LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGY 243
           ++H  L  K    +  + V S   ++D Y   + +D         P +  +S V    G 
Sbjct: 232 QIHGYLIKKI--GLRSQSVYSSTALIDFYSRNEGVD---------PNEFALSIVLGACGS 280

Query: 244 ARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMID 303
              GR L    +   + I ++   NA+++ Y + G +EE   +  ++   + VSWTT I 
Sbjct: 281 IGLGRQLHCSAIKHDL-ITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAIS 339

Query: 304 GYVRIAKLDEARRLLDQMPYK----NIAAQTAMISGYVQNKRMDEANQIFD---KIGTHD 356
              +    ++A  LL QM  +    N  A ++++S       +D+  Q      K+G   
Sbjct: 340 ANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDS 399

Query: 357 VVC-WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMG 415
            +C  N +I  Y++CG+M  A   F  M   D+ +WN++I G+A   Q  DA K      
Sbjct: 400 EICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHA---QHGDANK------ 450

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
                                  AL++F  M   G K D ST    L  C H   ++ G 
Sbjct: 451 -----------------------ALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGE 487

Query: 476 QIHHLAI-KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYA 532
               L I +  +         +I M  + GR   A  +  D   +P D + W +L+A   
Sbjct: 488 LFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEP-DALIWKTLLASCK 546

Query: 533 INGNATEAIKLFEEMVMEGVAPDPVTFI 560
           ++ N  +  KL  + +ME    D  +++
Sbjct: 547 LHRN-LDIGKLAADRLMELSDRDSASYV 573



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 139/316 (43%), Gaps = 35/316 (11%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR-- 75
            N  ++  G++G VEE   + +++   + V++ + ISA  +NG    A  L  QM     
Sbjct: 303 SNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGF 362

Query: 76  --NLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARE 129
             N  +++S+++       + +  +      +     ++ +   +I  Y++ G++  AR 
Sbjct: 363 TPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARL 422

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
            FD++ +  D   WN+++ G+A+ G+ N+A ++   M S  I   +S   G        L
Sbjct: 423 AFDVM-HTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGV-------L 474

Query: 190 ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRM 249
                  M E   + + LM+D Y            F   P      +  M+    RNGR 
Sbjct: 475 MGCNHSGMVEEGELFFRLMIDQYS-----------FTPAPSH----YACMIDMLGRNGRF 519

Query: 250 LEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE---EAARLFIEMPERNPVSWTTMIDGY 305
            EA R+ + MP   + + W  ++A+      ++    AA   +E+ +R+  S+  M + Y
Sbjct: 520 DEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMSNIY 579

Query: 306 VRIAKLDEARRLLDQM 321
               + ++AR++  +M
Sbjct: 580 AMHGEWEDARKVRRRM 595



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 100/211 (47%), Gaps = 23/211 (10%)

Query: 47  VTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM--- 103
            T N++I+ Y+K G++  AR  F+ M   ++ SWNS+I G+  +    +A E+F KM   
Sbjct: 402 CTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSN 461

Query: 104 -FRPDLFSWALMITCYTRKGELEKARELFDLL-------PNKEDTACWNAMVAGYAKIGN 155
             +PD  ++  ++      G +E+    F L+       P     AC   M+    + G 
Sbjct: 462 GIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYAC---MIDMLGRNGR 518

Query: 156 YNEAKKLLDAMP-SKNIVSWNSMLSGYTKNGEM---HLASKFFEAMEERDVVSWNLMLDG 211
           ++EA ++++ MP   + + W ++L+    +  +    LA+     + +RD  S+ LM + 
Sbjct: 519 FDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRDSASYVLMSNI 578

Query: 212 YVELDDLDSAWKFFQKIPEQNV-----VSWV 237
           Y    + + A K  +++ E  V      SW+
Sbjct: 579 YAMHGEWEDARKVRRRMDETGVKKDAGCSWI 609


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  328 bits (842), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 182/536 (33%), Positives = 291/536 (54%), Gaps = 42/536 (7%)

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGR----------MLEARRLFD 257
           ++     L  LD A   F+     N+  +  ++ G A N R          ML      D
Sbjct: 78  LISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPD 137

Query: 258 QMPIRNVV-AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
           ++ +  V+ +  A++   + R       +L +E      VS   ++D YV+I +L    +
Sbjct: 138 RLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVS---LVDMYVKIGELGFGLQ 194

Query: 317 LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
           L D+ P +N A                             ++ WNV+I G  + G + +A
Sbjct: 195 LFDESPQRNKA---------------------------ESILLWNVLINGCCKVGDLSKA 227

Query: 377 INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
            +LF  M  ++  +WN++I G+ +   +D A ++F +M   +N VSW  +I+GF QN  H
Sbjct: 228 ASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQM-PEKNVVSWTTMINGFSQNGDH 286

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSL 496
             AL +F  M +EG + +  T+  AL AC  + ALQ+G +IH+    +G+  +  +G +L
Sbjct: 287 EKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTAL 346

Query: 497 ITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
           + MYAKCG I++A  +F +    D+++W+ +I G+AI+G   +A++ F +M   G+ PD 
Sbjct: 347 VDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDE 406

Query: 557 VTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVK 616
           V F+ +L+ACSH G VD GL  FE M   Y+IEP ++HY  ++DLL RAGRLDEA   ++
Sbjct: 407 VIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQ 466

Query: 617 GMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDE 676
            M I P+  IWG L  ACR H+NI++  +  EKL +LEP+    Y  LSN++A  GRW++
Sbjct: 467 SMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWED 526

Query: 677 VEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           VE+VR  M+  G +K PG S+IEV+ Q+H+F++GD    R  EI   L+ + A  +
Sbjct: 527 VERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAK 582



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 194/420 (46%), Gaps = 28/420 (6%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKE 95
           +IF      N+     +IS+      ++ A  +F      NL  +N++I G   N + + 
Sbjct: 62  QIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEG 121

Query: 96  ARELFDKMFR----PDLFSWALMITCYTRKGELEKARELFD---LLPNKEDTACWNAMVA 148
           +   F  M R    PD  +   ++       ++   R L      L  + D+    ++V 
Sbjct: 122 SVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVD 181

Query: 149 GYAKIGNYNEAKKLLDAMPSKN----IVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS 204
            Y KIG      +L D  P +N    I+ WN +++G  K G++  A+  FEAM ER+  S
Sbjct: 182 MYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMPERNAGS 241

Query: 205 WNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM---PI 261
           WN +++G+V   DLD A + F ++PE+NVVSW TM++G+++NG   +A  +F +M    +
Sbjct: 242 WNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGV 301

Query: 262 R-NVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARR 316
           R N +   + + A  + G ++   R+   +     + N    T ++D Y +   +  A R
Sbjct: 302 RPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASR 361

Query: 317 LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT----HDVVCWNVMIKGYAQCGR 372
           +  +   K++   + MI G+  +   D+A Q F K+ +     D V +  ++   +  G 
Sbjct: 362 VFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGN 421

Query: 373 MDEAINLFRQM-----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
           +D+ +N F  M     +   +  +  ++    +  ++D+A+   + M    + V W AL 
Sbjct: 422 VDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALF 481



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 161/338 (47%), Gaps = 22/338 (6%)

Query: 10  NKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLF 69
           NK   +   N  I    K G + +A  +F  M ++N  ++NS+I+ + +NG ++ AR+LF
Sbjct: 203 NKAESILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELF 262

Query: 70  EQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----RP-DLFSWALMITCYTRKGEL 124
            QMP++N+VSW +MI G+  N   ++A  +F +M     RP DL   + ++ C T+ G L
Sbjct: 263 VQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLAC-TKIGAL 321

Query: 125 EKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
           +    + + L +   + +     A+V  YAK GN   A ++      K++++W+ M+ G+
Sbjct: 322 QVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGW 381

Query: 182 TKNGEMHLASKFFEAMEE----RDVVSWNLMLDGYVELDDLDSAWKFFQKIP-----EQN 232
             +G    A + F  M+      D V +  +L       ++D    FF+ +      E  
Sbjct: 382 AIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPT 441

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEA---ARLFI 288
           +  +  ++    R GR+ EA      MPI  + V W A+  A      IE A   A   +
Sbjct: 442 MKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLL 501

Query: 289 EMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
           ++  ++P S+  + + Y  + + ++  R+   M  + +
Sbjct: 502 QLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGV 539



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 150/410 (36%), Gaps = 106/410 (25%)

Query: 369 QCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALIS 428
           Q  ++   I L     N  +VT   +I+    ++ +D A+ IF       N   +NALI 
Sbjct: 55  QLHQIHAQIFLHNLFSNSRVVT--QLISSSCSLKSLDYALSIFRCF-DHPNLFVFNALIR 111

Query: 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN 488
           G  +N     ++  FVLM +   + D  TL   L + A L  + LGR +H   +K G   
Sbjct: 112 GLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEF 171

Query: 489 DLFVGNSLITMYAKCGR-----------------------------------IQNAELLF 513
           D FV  SL+ MY K G                                    +  A  LF
Sbjct: 172 DSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLF 231

Query: 514 KDADPVDVISWNSLIAG-------------------------------YAINGNATEAIK 542
           +     +  SWNSLI G                               ++ NG+  +A+ 
Sbjct: 232 EAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALS 291

Query: 543 LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF----------------------- 579
           +F  M+ EGV P+ +T +  L AC+ +G +  G ++                        
Sbjct: 292 MFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYA 351

Query: 580 ECMTEVYAIEPLVE-------HYACMIDLLSRAGRLDEAFEMVKGMK---IKPNAGIWGT 629
           +C     A    VE        ++ MI   +  G  D+A +    MK   I P+  I+  
Sbjct: 352 KCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLA 411

Query: 630 LLGACRMHQNIKLGRIAVEKLS---ELEPQKTSCYALLSNMHAEAGRWDE 676
           +L AC    N+  G    E +     +EP     Y L+ ++   AGR DE
Sbjct: 412 ILTACSHSGNVDQGLNFFESMRLDYSIEPTMKH-YTLIVDLLGRAGRLDE 460


>gi|5262217|emb|CAB45843.1| putative protein [Arabidopsis thaliana]
 gi|7268873|emb|CAB79077.1| putative protein [Arabidopsis thaliana]
          Length = 740

 Score =  328 bits (842), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 212/738 (28%), Positives = 360/738 (48%), Gaps = 79/738 (10%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           + +T   N ++  Y + G  + ARK+F++M  R++ SWN+ +        + EA E+FD 
Sbjct: 4   KSDTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFLTFRCKVGDLGEACEVFDG 63

Query: 103 MFRPDLFSWALMITCYTRKGELEKARELFD------LLPNKED-----TACWNAMVAGYA 151
           M   D+ SW  MI+   RKG  EKA  ++        LP++       +AC   +   + 
Sbjct: 64  MPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASVLSACSKVLDGVFG 123

Query: 152 KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM-HLASKFFEAMEERDVVSWNLMLD 210
              +    K  LD    KNI   N++LS Y K G +     + FE++ + + VS+  ++ 
Sbjct: 124 MRCHGVAVKTGLD----KNIFVGNALLSMYAKCGFIVDYGVRVFESLSQPNEVSYTAVIG 179

Query: 211 GYVELDDLDSAWKFFQKIPEQ----------NVVSWV----------------------- 237
           G    + +  A + F+ + E+          N++S                         
Sbjct: 180 GLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDSLSEIYGNELGKQIHC 239

Query: 238 ---------------TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEE 282
                          ++L  YA+N  M  A  +F +MP  NVV+WN MI  + Q  + ++
Sbjct: 240 LALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVGFGQEYRSDK 299

Query: 283 AARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
           +      M +     N V+  +++    R   ++  RR+   +P  +++A  AM+SGY  
Sbjct: 300 SVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETGRRIFSSIPQPSVSAWNAMLSGYSN 359

Query: 339 NKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQC-----GRMDEAINLFRQMVNKDIV 389
            +  +EA   F ++       D    +V++   A+      G+    + + R  ++K+  
Sbjct: 360 YEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARLRFLEGGKQIHGV-VIRTEISKNSH 418

Query: 390 TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
             + +IA Y++  +M+ +  IF++     +   WN++ISGF  N     AL +F  M Q 
Sbjct: 419 IVSGLIAVYSECEKMEISECIFDDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQT 478

Query: 450 GKKA-DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
                + ++ A  LS+C+ L +L  GRQ H L +KSGYV+D FV  +L  MY KCG I +
Sbjct: 479 AVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCGEIDS 538

Query: 509 AELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
           A   F      + + WN +I GY  NG   EA+ L+ +M+  G  PD +TF+ VL+ACSH
Sbjct: 539 ARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTACSH 598

Query: 569 VGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWG 628
            GLV+ GL++   M  ++ IEP ++HY C++D L RAGRL++A ++ +    K ++ +W 
Sbjct: 599 SGLVETGLEILSSMQRIHGIEPELDHYICIVDCLGRAGRLEDAEKLAEATPYKSSSVLWE 658

Query: 629 TLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688
            LL +CR+H ++ L R   EKL  L+PQ ++ Y LLSN ++   +WD+   ++  M  + 
Sbjct: 659 ILLSSCRVHGDVSLARRVAEKLMRLDPQSSAAYVLLSNTYSSLRQWDDSAALQGLMNKNR 718

Query: 689 AQKQPGCSWIEVKNQIHT 706
             K PG SW    N + +
Sbjct: 719 VHKTPGQSWTTYGNDLDS 736



 Score = 43.5 bits (101), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 33/121 (27%)

Query: 485 GYVNDLFVGNSLITMYAKCGRIQ-----------------NAELLFK------------- 514
           G  +D ++ N L+ +Y +CG                    NA L F+             
Sbjct: 2   GMKSDTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFLTFRCKVGDLGEACEVF 61

Query: 515 DADP-VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVD 573
           D  P  DV+SWN++I+     G   +A+ +++ MV +G  P   T   VLSACS V  +D
Sbjct: 62  DGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASVLSACSKV--LD 119

Query: 574 G 574
           G
Sbjct: 120 G 120


>gi|334186756|ref|NP_193809.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635629|sp|Q9SVH0.2|PP329_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g20770
 gi|332658959|gb|AEE84359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 774

 Score =  328 bits (842), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 216/753 (28%), Positives = 366/753 (48%), Gaps = 80/753 (10%)

Query: 28  SGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGY 87
           SG+V     +   M + +T   N ++  Y + G  + ARK+F++M  R++ SWN+ +   
Sbjct: 24  SGKVIHGFIVRMGM-KSDTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFLTFR 82

Query: 88  LHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD------LLPNKED-- 139
                + EA E+FD M   D+ SW  MI+   RKG  EKA  ++        LP++    
Sbjct: 83  CKVGDLGEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLA 142

Query: 140 ---TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM-HLASKFFE 195
              +AC   +   +    +    K  LD    KNI   N++LS Y K G +     + FE
Sbjct: 143 SVLSACSKVLDGVFGMRCHGVAVKTGLD----KNIFVGNALLSMYAKCGFIVDYGVRVFE 198

Query: 196 AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----------NVVSWV-------- 237
           ++ + + VS+  ++ G    + +  A + F+ + E+          N++S          
Sbjct: 199 SLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDS 258

Query: 238 ------------------------------TMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
                                         ++L  YA+N  M  A  +F +MP  NVV+W
Sbjct: 259 LSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSW 318

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
           N MI  + Q  + +++      M +     N V+  +++    R   ++  RR+   +P 
Sbjct: 319 NIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETGRRIFSSIPQ 378

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQC-----GRMD 374
            +++A  AM+SGY   +  +EA   F ++       D    +V++   A+      G+  
Sbjct: 379 PSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARLRFLEGGKQI 438

Query: 375 EAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
             + + R  ++K+    + +IA Y++  +M+ +  IF++     +   WN++ISGF  N 
Sbjct: 439 HGV-VIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDCINELDIACWNSMISGFRHNM 497

Query: 435 FHLDALKIFVLMTQEGKKA-DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG 493
               AL +F  M Q      + ++ A  LS+C+ L +L  GRQ H L +KSGYV+D FV 
Sbjct: 498 LDTKALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVE 557

Query: 494 NSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA 553
            +L  MY KCG I +A   F      + + WN +I GY  NG   EA+ L+ +M+  G  
Sbjct: 558 TALTDMYCKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEK 617

Query: 554 PDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFE 613
           PD +TF+ VL+ACSH GLV+ GL++   M  ++ IEP ++HY C++D L RAGRL++A +
Sbjct: 618 PDGITFVSVLTACSHSGLVETGLEILSSMQRIHGIEPELDHYICIVDCLGRAGRLEDAEK 677

Query: 614 MVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGR 673
           + +    K ++ +W  LL +CR+H ++ L R   EKL  L+PQ ++ Y LLSN ++   +
Sbjct: 678 LAEATPYKSSSVLWEILLSSCRVHGDVSLARRVAEKLMRLDPQSSAAYVLLSNTYSSLRQ 737

Query: 674 WDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHT 706
           WD+   ++  M  +   K PG SW    N + +
Sbjct: 738 WDDSAALQGLMNKNRVHKTPGQSWTTYGNDLDS 770


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 183/604 (30%), Positives = 322/604 (53%), Gaps = 56/604 (9%)

Query: 166 MPSKNIVSWNSMLSGYTKNGEMH----LASKFFEAMEERDVVSWNLMLDGYVELDDLDSA 221
           MP +N VS+ +++ GY ++ ++     L S+      E +   +  +L   V ++  + A
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 222 WKFFQKI----PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR 277
           +     I     E N      ++  YA  G +  AR+ FD +  +++V+W  M+A Y + 
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 278 GQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQ 329
            + +++ +LF EM       N  ++  ++   + +      + +    L      ++   
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVG 180

Query: 330 TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM------ 383
             ++  Y +    ++  ++F+++  HDV+ W+ MI  YAQ  +  EA+ LF QM      
Sbjct: 181 VGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVL 240

Query: 384 ---------------------------------VNKDIVTWNTMIAGYAQIRQMDDAVKI 410
                                            ++ ++   N ++  YA+  ++D+++K+
Sbjct: 241 PNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKL 300

Query: 411 FEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAA 470
           F E+   RN V+WN +I G++Q+     AL ++  M +   +A   T +  L ACA LAA
Sbjct: 301 FMEL-PNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAA 359

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
           ++LG QIH L++K+ Y  D+ VGN+LI MYAKCG I+NA L+F      D ISWN++I+G
Sbjct: 360 MELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISG 419

Query: 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP 590
           Y+++G   EA+K F+ M      P+ +TF+ +LSACS+ GL+D G   F+ M + Y IEP
Sbjct: 420 YSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEP 479

Query: 591 LVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL 650
            +EHY CM+ LL R+G LD+A ++++ + ++PN  +W  LLGAC +H ++ LG ++ +++
Sbjct: 480 CMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQI 539

Query: 651 SELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSG 710
            +++PQ  + + LLSN++A   RW+ V  VR  M+  G +K+PG SWIE +  +H F  G
Sbjct: 540 LQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVG 599

Query: 711 DPKQ 714
           D   
Sbjct: 600 DTSH 603



 Score =  142 bits (357), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 186/436 (42%), Gaps = 93/436 (21%)

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR------PDLFSWALMITCYTRKGELE 125
           MP RN VS+ ++I GY+ + ++ E  +LF ++ R      P +F+  L +       EL 
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 126 KA-RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
            +       L ++ +     A++  YA  G+ N A++  DA+  K++VSW  M++ Y +N
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 185 GEMHLASKFFEAME---------------------------------------ERDVVSW 205
                + + F  M                                        E D+   
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVG 180

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM------ 259
             +LD Y +  D +   + F+++P+ +V+ W  M+S YA++ +  EA  LF QM      
Sbjct: 181 VGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVL 240

Query: 260 PIR---------------------------------NVVAWNAMIAAYVQRGQIEEAARL 286
           P +                                 NV   NA++  Y + G+++ + +L
Sbjct: 241 PNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKL 300

Query: 287 FIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQN----KRM 342
           F+E+P RN V+W TMI GYV+    D+A  L   M    + A     S  ++       M
Sbjct: 301 FMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAM 360

Query: 343 DEANQI----FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGY 398
           +   QI       I   DVV  N +I  YA+CG +  A  +F  +  +D ++WN MI+GY
Sbjct: 361 ELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGY 420

Query: 399 AQIRQMDDAVKIFEEM 414
           +    + +A+K F+ M
Sbjct: 421 SMHGLVGEALKAFQMM 436



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 192/405 (47%), Gaps = 27/405 (6%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           I+    + N     ++I AYA  G VN AR+ F+ +  +++VSW  M+A Y  ND+ +++
Sbjct: 67  IYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDS 126

Query: 97  RELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAG 149
            +LF +M    F P+ F++A ++            + +   +     + D      ++  
Sbjct: 127 LQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDL 186

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV----SW 205
           Y K G+ N+  ++ + MP  +++ W+ M+S Y ++ +   A + F  M    V+    ++
Sbjct: 187 YTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTF 246

Query: 206 NLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
             +L     +++L    +    +     + NV     ++  YA+ GR+  + +LF ++P 
Sbjct: 247 ASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPN 306

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPE----RNPVSWTTMIDGYVRIAKLDEARRL 317
           RN V WN MI  YVQ G  ++A  L+  M E     + V++++++     +A ++   ++
Sbjct: 307 RNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQI 366

Query: 318 ----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRM 373
               L  +  K++    A+I  Y +   +  A  +FD +   D + WN MI GY+  G +
Sbjct: 367 HSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLV 426

Query: 374 DEAINLFRQMVNKDIV----TWNTMIAGYAQIRQMDDAVKIFEEM 414
            EA+  F+ M   + V    T+ ++++  +    +D     F+ M
Sbjct: 427 GEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSM 471



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 112/493 (22%), Positives = 198/493 (40%), Gaps = 101/493 (20%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
           + A +  +G++ S  F     I      G V  A + F  ++ K+ V++  M++ YA+N 
Sbjct: 63  LHACIYKLGHE-SNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEND 121

Query: 61  RVNDARKLFEQMPQRNLVSWNSMIAGYL---------------HNDKVKEAREL------ 99
           R  D+ +LF +M        +   AG L               H   +K   E+      
Sbjct: 122 RFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGV 181

Query: 100 ------------------FDKMFRPDLFSWALMITCYTRKGELEKARELFD------LLP 135
                             F++M + D+  W+ MI+ Y +  +  +A ELF       +LP
Sbjct: 182 GLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLP 241

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKK----LLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
           N+   A   +++   A I N    K+    +L      N+   N+++  Y K G +  + 
Sbjct: 242 NQFTFA---SVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSM 298

Query: 192 KFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNG 247
           K F  +  R+ V+WN M+ GYV+  D D A   ++ + E  V    V++ ++L   A   
Sbjct: 299 KLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLA 358

Query: 248 RM--------LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWT 299
            M        L  + ++D    ++VV  NA+I  Y + G I+ A  +F  + ER+ +SW 
Sbjct: 359 AMELGTQIHSLSLKTIYD----KDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWN 414

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
            MI GY     + EA +                       + M E   + +K+       
Sbjct: 415 AMISGYSMHGLVGEALKAF---------------------QMMQETECVPNKLT------ 447

Query: 360 WNVMIKGYAQCGRMDEAINLFRQMVNKDIVT-----WNTMIAGYAQIRQMDDAVKIFEEM 414
           +  ++   +  G +D   N F+ MV    +      +  M+    +   +D AVK+ EE+
Sbjct: 448 FVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEI 507

Query: 415 GKRRNTVSWNALI 427
               N   W AL+
Sbjct: 508 PLEPNVKVWRALL 520



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/392 (22%), Positives = 190/392 (48%), Gaps = 32/392 (8%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR----NLVSWNS 82
           K G   + +++F +M + + + ++ MIS YA++ +  +A +LF QM +     N  ++ S
Sbjct: 189 KFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFAS 248

Query: 83  MIAGYLHNDKVKEARELFDKMFRPDL----FSWALMITCYTRKGELEKARELFDLLPNKE 138
           ++      + ++  +++   + +  L    F    ++  Y + G L+ + +LF  LPN+ 
Sbjct: 249 VLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRN 308

Query: 139 DTACWNAMVAGYAKIGNYNEA----KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF- 193
           +   WN M+ GY + G+ ++A    K +L+     + V+++S+L        M L ++  
Sbjct: 309 EVT-WNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIH 367

Query: 194 ---FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRML 250
               + + ++DVV  N ++D Y +   + +A   F  + E++ +SW  M+SGY+ +G + 
Sbjct: 368 SLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVG 427

Query: 251 EARRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTM 301
           EA + F  M     + N + + ++++A    G ++     F  M +   +      +T M
Sbjct: 428 EALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCM 487

Query: 302 IDGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMD----EANQIFDKIGTHD 356
           +    R   LD+A +L++++P + N+    A++   V +  +D     A QI  +I   D
Sbjct: 488 VWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQIL-QIDPQD 546

Query: 357 VVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
                ++   YA+  R +   ++ + M NK +
Sbjct: 547 EATHVLLSNIYARTRRWNSVASVRKFMKNKGV 578



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 147/308 (47%), Gaps = 20/308 (6%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           N    N+++  YAK GR++++ KLF ++P RN V+WN+MI GY+ +    +A  L+  M 
Sbjct: 277 NVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNML 336

Query: 105 RPDLFSWALMITCYTRKGELEKARELFDLLPN-------KEDTACWNAMVAGYAKIGNYN 157
              + +  +  +   R      A EL   + +        +D    NA++  YAK G+  
Sbjct: 337 ECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIK 396

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL----MLDGYV 213
            A+ + D +  ++ +SWN+M+SGY+ +G +  A K F+ M+E + V   L    +L    
Sbjct: 397 NARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACS 456

Query: 214 ELDDLDSAWKFFQKIP-----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAW 267
               LD    +F+ +      E  +  +  M+    R+G + +A +L +++P+  NV  W
Sbjct: 457 NAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVW 516

Query: 268 NAMIAAYVQRGQIE---EAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
            A++ A V    ++    +A+  +++  ++  +   + + Y R  + +    +   M  K
Sbjct: 517 RALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNK 576

Query: 325 NIAAQTAM 332
            +  +  +
Sbjct: 577 GVKKEPGL 584


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 228/838 (27%), Positives = 372/838 (44%), Gaps = 165/838 (19%)

Query: 50   NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLH-----NDKVKEARELFDKM- 103
            N++I+ Y+K G +  AR++F++   R+LV+WNS++A Y        + V E   LF  + 
Sbjct: 650  NNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVLEGFRLFGLLR 709

Query: 104  --------------------------------------FRPDLFSWALMITCYTRKGELE 125
                                                  F  DLF    ++  Y + G + 
Sbjct: 710  EFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVG 769

Query: 126  KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------------------- 166
            +AR LFD +P + D   WN M+  Y +    +EA +   A                    
Sbjct: 770  QARLLFDKMPER-DAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIGGV 828

Query: 167  --------------------------PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE- 199
                                         NI +WN  L+ +   G++  A   F+ +   
Sbjct: 829  NSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRS 888

Query: 200  ---RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEA 252
                D V+  ++L   V  DDLD   +    + + +    V    ++++ Y++ G +  A
Sbjct: 889  TIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAA 948

Query: 253  RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWTTMIDGYVRIAK 310
             + F   P  ++++WN MI++Y Q     EA   F ++      P  +T        +A 
Sbjct: 949  EKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFT--------LAS 1000

Query: 311  LDEARRLLDQMPYKNIAAQ-----------------TAMISGYVQNKRMDEANQIFDKIG 353
            +  A    D+  Y  + +Q                 TA+I  Y +  +MDEA  +     
Sbjct: 1001 VLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKY 1060

Query: 354  THDVVCWNVMIKGYAQCGRMDEAINLFRQM------------------------------ 383
              D+  WN ++ GY +  +  +A+  F  M                              
Sbjct: 1061 DFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQ 1120

Query: 384  ---------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
                      N D+   + ++  Y +   M +A+++F E+  R + V+W  +ISG+++N 
Sbjct: 1121 IQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEI-SRPDEVAWTTMISGYIENG 1179

Query: 435  FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN 494
                AL ++ LM   G + D  T A  + A + L AL+ G+QIH   +K  Y  D FVG 
Sbjct: 1180 DEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGT 1239

Query: 495  SLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP 554
            SL+ MY KCG +Q+A  +F+  D   V+ WN+++ G A +G+  EA+ LF  M   G+ P
Sbjct: 1240 SLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQP 1299

Query: 555  DPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEM 614
            D VTFIGVLSACSH GL     K F+ M + Y I P +EHY+C++D L RAGR+ EA  +
Sbjct: 1300 DKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENV 1359

Query: 615  VKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRW 674
            +  M  K +A ++  LLGACR   + +  +   +KL  L+P  +S Y LLSN++A + +W
Sbjct: 1360 IASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQW 1419

Query: 675  DEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            D+V   R  M+    +K PG SWI+VKN++H F+  D    + + I   ++ L  +IR
Sbjct: 1420 DDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIR 1477



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 161/688 (23%), Positives = 286/688 (41%), Gaps = 123/688 (17%)

Query: 106  PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGN---------- 155
            PD +    +IT Y++ G L  AR++FD   ++ D   WN+++A YA+  +          
Sbjct: 644  PDRYLTNNLITMYSKCGSLCSARQVFDKSSDR-DLVTWNSILAAYAQFADSSYENVLEGF 702

Query: 156  -----------------------------YNEAKKLLDAMPSKNIVSWNSMLSG-----Y 181
                                         + +  + +     K     +  +SG     Y
Sbjct: 703  RLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIY 762

Query: 182  TKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI------PE-QNVV 234
             K G +  A   F+ M ERD V WN+ML  YVE    D A +FF         P+  N+ 
Sbjct: 763  CKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLH 822

Query: 235  SWVTMLSGYARNGRMLEARRL---------FDQMPIRNVVAWNAMIAAYVQRGQIEEAAR 285
              +  ++    N R   A ++         FDQ    N+ AWN  +  ++  GQI  A  
Sbjct: 823  CVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGS--NIFAWNKKLTEFLHAGQIVAAID 880

Query: 286  LFIEMPE----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA----AQTAMISGYV 337
             F  +       + V+   ++   V    LD   ++   +   + A       ++++ Y 
Sbjct: 881  CFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYS 940

Query: 338  QNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN------------ 385
            +   +  A + F      D++ WN MI  YAQ     EAI  FR ++             
Sbjct: 941  KAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLAS 1000

Query: 386  ------------------------------KDIVTWNTMIAGYAQIRQMDDAVKIFEEMG 415
                                           D      +I  Y++  +MD+A  +    G
Sbjct: 1001 VLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLH--G 1058

Query: 416  KRR-NTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
            K   +  SWNA++ G++++     AL+ F LM + G   D  TLA A+ A   L  L+ G
Sbjct: 1059 KYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQG 1118

Query: 475  RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
            +QI   AIK G+ NDL+V + ++ MY KCG + NA  LF +    D ++W ++I+GY  N
Sbjct: 1119 KQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIEN 1178

Query: 535  GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV-YAIEPLVE 593
            G+   A+ ++  M + GV PD  TF  ++ A S +  ++ G ++   + ++ Y+++  V 
Sbjct: 1179 GDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVG 1238

Query: 594  HYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIK--LGRIAVEKLS 651
                ++D+  + G + +A+ + + M ++     W  +L     H ++   L      + +
Sbjct: 1239 --TSLVDMYCKCGSVQDAYRVFRKMDVR-KVVFWNAMLLGLAQHGHVDEALNLFRTMQSN 1295

Query: 652  ELEPQKTSCYALLSNMHAEAGRWDEVEK 679
             ++P K +   +LS   + +G + E  K
Sbjct: 1296 GIQPDKVTFIGVLSAC-SHSGLFSEAYK 1322



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 132/568 (23%), Positives = 239/568 (42%), Gaps = 108/568 (19%)

Query: 134  LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS-- 191
            LP++  T   N ++  Y+K G+   A+++ D    +++V+WNS+L+ Y +  +    +  
Sbjct: 643  LPDRYLT---NNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQFADSSYENVL 699

Query: 192  ---KFFEAMEERDVVSWNLM---------LDGYVELDDLDSAWKFFQKIP-EQNVVSWVT 238
               + F  + E       L          L G+V++   ++   +  KI  E ++     
Sbjct: 700  EGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVS--ETVHGYAVKIGFELDLFVSGA 757

Query: 239  MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW 298
            +++ Y + G + +AR LFD+MP R+ V WN M+ AYV+    +EA R F           
Sbjct: 758  LVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAF-------- 809

Query: 299  TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQI---------F 349
                             R      + N+      ++  V N R   A Q+         F
Sbjct: 810  ----------------HRSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPF 853

Query: 350  DKIGTHDVVCWNVMIKGYAQCGRMDEAINLF----RQMVNKDIVTW-------------- 391
            D+    ++  WN  +  +   G++  AI+ F    R  +  D VT               
Sbjct: 854  DQ--GSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLD 911

Query: 392  ---------------------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
                                 N+++  Y++   +  A K F       + +SWN +IS +
Sbjct: 912  LGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFIN-SPELDLISWNTMISSY 970

Query: 431  LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA---HLAALQLGRQIHHLAIKSGYV 487
             QN   ++A+  F  + ++G K D  TLA  L AC+         LG Q+H  AIK G +
Sbjct: 971  AQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGII 1030

Query: 488  NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEM 547
            ND FV  +LI +Y+K G++  AE L       D+ SWN+++ GY  +  + +A++ F  M
Sbjct: 1031 NDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLM 1090

Query: 548  VMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEH----YACMIDLLS 603
               G+  D +T    + A   +  +  G ++     + YAI+    +     + ++D+  
Sbjct: 1091 HEMGIPIDEITLATAIKASGCLINLKQGKQI-----QAYAIKLGFNNDLWVSSGVLDMYI 1145

Query: 604  RAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
            + G +  A E+  G   +P+   W T++
Sbjct: 1146 KCGDMPNALELF-GEISRPDEVAWTTMI 1172



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 118/476 (24%), Positives = 215/476 (45%), Gaps = 69/476 (14%)

Query: 10   NKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQK----NTVTY---------------- 49
            ++GS +F  NKK+T+   +G++  AI  F  + +     ++VT                 
Sbjct: 854  DQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLG 913

Query: 50   -------------------NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHN 90
                               NS+++ Y+K G V  A K F   P+ +L+SWN+MI+ Y  N
Sbjct: 914  EQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQN 973

Query: 91   DKVKEA----RELFDKMFRPDLFSWALMI-TCYT-RKGELEKARELFDLLPNK----EDT 140
            +   EA    R+L     +PD F+ A ++  C T  +GE         +   K     D+
Sbjct: 974  NLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDS 1033

Query: 141  ACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER 200
                A++  Y+K G  +EA+ LL      ++ SWN+++ GY K+ +   A + F  M E 
Sbjct: 1034 FVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEM 1093

Query: 201  DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ------NVVSWVT--MLSGYARNGRMLEA 252
             +    + L   ++        K  ++I         N   WV+  +L  Y + G M  A
Sbjct: 1094 GIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNA 1153

Query: 253  RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF----IEMPERNPVSWTTMIDGYVRI 308
              LF ++   + VAW  MI+ Y++ G  + A  ++    +   + +  ++ T+I     +
Sbjct: 1154 LELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCL 1213

Query: 309  AKLDEARRL---LDQMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMI 364
              L++ +++   + ++ Y  +    T+++  Y +   + +A ++F K+    VV WN M+
Sbjct: 1214 TALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAML 1273

Query: 365  KGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
             G AQ G +DEA+NLFR M    +  D VT+  +++  +      +A K F+ M K
Sbjct: 1274 LGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFK 1329



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 66/310 (21%), Positives = 133/310 (42%), Gaps = 48/310 (15%)

Query: 27   KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
            K G +  A+++F ++S+ + V + +MIS Y +NG  + A  ++  M           ++G
Sbjct: 1146 KCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLM----------RVSG 1195

Query: 87   YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD---LLPNKEDTACW 143
                              +PD +++A +I   +    LE+ +++      L    D    
Sbjct: 1196 -----------------VQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVG 1238

Query: 144  NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----E 199
             ++V  Y K G+  +A ++   M  + +V WN+ML G  ++G +  A   F  M+    +
Sbjct: 1239 TSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQ 1298

Query: 200  RDVVSWNLMLDGYVELDDLDSAWKFFQKI-------PEQNVVSWVTMLSGYARNGRMLEA 252
             D V++  +L           A+K+F  +       PE  +  +  ++    R GR+ EA
Sbjct: 1299 PDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPE--IEHYSCLVDALGRAGRIQEA 1356

Query: 253  RRLFDQMPIRNVVA-WNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKL 311
              +   MP +   + + A++ A   +G  E A R+  ++   +P   +     YV ++ +
Sbjct: 1357 ENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSS----AYVLLSNI 1412

Query: 312  DEARRLLDQM 321
              A R  D +
Sbjct: 1413 YAASRQWDDV 1422



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 52/82 (63%), Gaps = 5/82 (6%)

Query: 468 LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSL 527
           +A L+LG++ H   + SG + D ++ N+LITMY+KCG + +A  +F  +   D+++WNS+
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 528 IAGYAINGNAT-----EAIKLF 544
           +A YA   +++     E  +LF
Sbjct: 684 LAAYAQFADSSYENVLEGFRLF 705


>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 173/444 (38%), Positives = 258/444 (58%), Gaps = 4/444 (0%)

Query: 300 TMIDGYVRI--AKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV 357
           ++ID Y R   A LD A  L   M  +++    +MI G V+   ++ A ++FD++   D+
Sbjct: 160 SLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFDEMPERDM 219

Query: 358 VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
           V WN M+ GYA+ G MD A  LF +M  ++IV+W+TM+ GY++   MD A  +F+     
Sbjct: 220 VSWNTMLDGYAKAGEMDRAFELFERMPQRNIVSWSTMVCGYSKGGDMDMARVLFDRC-PA 278

Query: 418 RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI 477
           +N V W  +I+G+ +  F  +A +++  M + G + D   L   L+ACA    L LG++I
Sbjct: 279 KNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAESGMLGLGKRI 338

Query: 478 HHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA-DPVDVISWNSLIAGYAINGN 536
           H    +  +     V N+ I MYAKCG +  A  +F       DV+SWNS+I G+A++G+
Sbjct: 339 HASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGH 398

Query: 537 ATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYA 596
             +A++LF  MV EG  PD  TF+G+L AC+H GLV+ G K F  M +VY I P VEHY 
Sbjct: 399 GEKALELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYG 458

Query: 597 CMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQ 656
           CM+DLL R G L EAF +++ M ++PNA I GTLL ACRMH ++   R   E+L ++EP 
Sbjct: 459 CMMDLLGRGGHLKEAFTLLRSMPMEPNAIILGTLLNACRMHNDVDFARAVCEQLFKVEPT 518

Query: 657 KTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCR 716
               Y+LLSN++A+AG W  V  VR+ M  +G QK  G S IEV+ ++H F   D    +
Sbjct: 519 DPGNYSLLSNIYAQAGDWMNVANVRLQMMNTGGQKPSGASSIEVEEEVHEFTVFDQSHPK 578

Query: 717 TAEICNTLKTLAAQIRNTPLAVII 740
           + +I   +  L   +R      +I
Sbjct: 579 SDDIYKMIDRLVQDLRQVGYVPMI 602



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 154/605 (25%), Positives = 268/605 (44%), Gaps = 111/605 (18%)

Query: 20  KKITQLGKSGRVEEAIKIFSQMSQKNT----VTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           +K+  L K   ++   +I +Q+ + N          +I+A++    +  A  +F  +P  
Sbjct: 23  EKLCDLHKCSNLDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHP 82

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFR-------PDLFSWALMITCYTRKGELEKAR 128
           N+  +NS+I  + HN         F+  F+       PD F++  ++   T    L   R
Sbjct: 83  NVHLYNSIIRAHAHN--TSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVR 140

Query: 129 EL---FDLLPNKEDTACWNAMVAGYAKIGN--YNEAKKLLDAMPSKNIVSWNSMLSGYTK 183
            +    +      D    N+++  Y++ G+   + A  L  AM  +++V+WNSM+ G  +
Sbjct: 141 MIHAHVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVR 200

Query: 184 NGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGY 243
            GE+  A K F+ M ERD+VSWN MLDGY +  ++D A++ F+++P++N+VSW TM+ GY
Sbjct: 201 CGELEGACKLFDEMPERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNIVSWSTMVCGY 260

Query: 244 ARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMID 303
           ++ G M  AR LFD+ P +NVV W  +IA Y ++G + EA  L+                
Sbjct: 261 SKGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELY---------------- 304

Query: 304 GYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD-KIGTHDVVCWNV 362
                 K++EA    D     +I A  A        KR+  + + +  + GT  +   N 
Sbjct: 305 -----GKMEEAGLRPDDGFLISILAACAESGMLGLGKRIHASMRRWRFRCGTKVL---NA 356

Query: 363 MIKGYAQCGRMDEAINLFR-QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
            I  YA+CG +D A ++F   M  KD+V+WN+MI G+A               G++    
Sbjct: 357 FIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFA-----------MHGHGEK---- 401

Query: 422 SWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLA 481
                            AL++F  M  EG + D  T    L AC H   +  GR+  +  
Sbjct: 402 -----------------ALELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEGRKYFY-- 442

Query: 482 IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
                        S+  +Y    ++++               +  ++      G+  EA 
Sbjct: 443 -------------SMEKVYGIVPQVEH---------------YGCMMDLLGRGGHLKEAF 474

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601
            L   M ME   P+ +    +L+AC     VD    + E + +V   +P   +Y+ + ++
Sbjct: 475 TLLRSMPME---PNAIILGTLLNACRMHNDVDFARAVCEQLFKVEPTDP--GNYSLLSNI 529

Query: 602 LSRAG 606
            ++AG
Sbjct: 530 YAQAG 534



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 159/325 (48%), Gaps = 18/325 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V   N  I  L + G +E A K+F +M +++ V++N+M+  YAK G ++ A +LFE+MPQ
Sbjct: 188 VVTWNSMIGGLVRCGELEGACKLFDEMPERDMVSWNTMLDGYAKAGEMDRAFELFERMPQ 247

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN+VSW++M+ GY     +  AR LFD+    ++  W  +I  Y  KG + +A EL+  +
Sbjct: 248 RNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKM 307

Query: 135 PN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS----WNSMLSGYTKNGEM 187
                + D     +++A  A+ G     K++  +M            N+ +  Y K G +
Sbjct: 308 EEAGLRPDDGFLISILAACAESGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGCL 367

Query: 188 HLASKFFEA-MEERDVVSWNLMLDGYVELDDLDSAWKFFQK-IP---EQNVVSWVTMLSG 242
             A   F   M ++DVVSWN M+ G+      + A + F + +P   E +  ++V +L  
Sbjct: 368 DAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSRMVPEGFEPDTYTFVGLLCA 427

Query: 243 YARNGRMLEARRLFDQMP-----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-ERNPV 296
               G + E R+ F  M      +  V  +  M+    + G ++EA  L   MP E N +
Sbjct: 428 CTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFTLLRSMPMEPNAI 487

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQM 321
              T+++       +D AR + +Q+
Sbjct: 488 ILGTLLNACRMHNDVDFARAVCEQL 512



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 122/272 (44%), Gaps = 18/272 (6%)

Query: 369 QCGRMDEAINLFRQMV----NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
           +C  +D    +  Q++    ++D+     +IA ++  R +  AV +F  +    N   +N
Sbjct: 30  KCSNLDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHV-PHPNVHLYN 88

Query: 425 ALISGFLQNEFHLD-ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
           ++I     N  H       F  M + G   D+ T    L AC   ++L L R IH    K
Sbjct: 89  SIIRAHAHNTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHVEK 148

Query: 484 SGYVNDLFVGNSLITMYAKCGR--IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
            G+  D+FV NSLI  Y++CG   +  A  LF      DV++WNS+I G    G    A 
Sbjct: 149 FGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGAC 208

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601
           KLF+EM       D V++  +L   +  G +D   +LFE M +   +      ++ M+  
Sbjct: 209 KLFDEMPER----DMVSWNTMLDGYAKAGEMDRAFELFERMPQRNIVS-----WSTMVCG 259

Query: 602 LSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
            S+ G +D A  +      K N  +W T++  
Sbjct: 260 YSKGGDMDMARVLFDRCPAK-NVVLWTTIIAG 290


>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
 gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 199/636 (31%), Positives = 331/636 (52%), Gaps = 61/636 (9%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE--MHLASKFFEAMEERD 201
           N ++  YAK G+ + AK + + +  KN+VS+N ++ G + NG    +   + F  M   +
Sbjct: 47  NNLIKFYAKCGHLHGAKLVFENLKHKNVVSYNCLIHGLSHNGSKGSNFVLELFRRMIANN 106

Query: 202 VVSWNLMLDGYVELDDLDSAWKF---------FQKIPEQNVVSWVTMLSGYARNGRMLEA 252
           ++       G      L+    F          +     +V    ++++ Y + G + EA
Sbjct: 107 ILPDAHTFPGVFTAAALNLGCNFDARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEA 166

Query: 253 RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRI 308
           R+LFD+MP RN+V+W  MI+ Y  +   +EA  +F  M       N   +T+++   V  
Sbjct: 167 RKLFDRMPERNLVSWTTMISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCP 226

Query: 309 AKLDEARRLLDQMPYKN-----IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVM 363
             +D  +++   +  KN     ++   A+++ Y +   ++ +  +F+     + + W+ +
Sbjct: 227 EFVDSGKQV-HCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSAL 285

Query: 364 IKGYAQCGRMDEAINLFRQM---------------------------------------V 384
           I GY+Q G   +A+ LF +M                                        
Sbjct: 286 ITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGY 345

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
              I T   ++  YA+     DA K F+ +    + V W ++I+G++QN  + +AL ++ 
Sbjct: 346 ETQIYTATALVDMYAKFGFTGDARKGFDFL-LEPDLVLWTSIIAGYVQNGKNEEALSMYG 404

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG 504
            M       +  T+A  L AC++LAAL+ G+QIH   IK G   +L + ++L TMYAKCG
Sbjct: 405 RMQMRKILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGPELSIRSALSTMYAKCG 464

Query: 505 RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLS 564
            ++   L+F+     D++SWN++I+G + NG+  EA++LFEEM +EG  PD +TF+ VLS
Sbjct: 465 SLEEGVLIFRRMLQRDIVSWNAMISGLSQNGHGREALELFEEMRLEGTKPDHITFVTVLS 524

Query: 565 ACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNA 624
           ACSH+G+V  G   F  M + + + P VEHYACM+D+LSRAG+L+EA E ++   I    
Sbjct: 525 ACSHMGIVKRGWAYFNMMFDEFCLVPRVEHYACMVDVLSRAGKLNEAKEFIESAIIDHGM 584

Query: 625 GIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSM 684
            +W  LL ACR H N +LG  A EKL EL  +++S Y LLS+++   GR  +V +VR  M
Sbjct: 585 CLWRILLPACRNHCNYELGAYAGEKLMELGSRESSAYVLLSSIYTAMGRLADVVRVRRMM 644

Query: 685 EGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           +  G +K+ GCSWIE+K+ +H F+ GD    +  EI
Sbjct: 645 KVRGVRKETGCSWIELKSHVHVFVVGDQIHPQIEEI 680



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 129/524 (24%), Positives = 221/524 (42%), Gaps = 134/524 (25%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKE--ARELFDKMFR-- 105
           N++I  YAK G ++ A+ +FE +  +N+VS+N +I G  HN         ELF +M    
Sbjct: 47  NNLIKFYAKCGHLHGAKLVFENLKHKNVVSYNCLIHGLSHNGSKGSNFVLELFRRMIANN 106

Query: 106 --PDLFSWALMITCYTRK-GELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNEA 159
             PD  ++  + T      G    AR++  L     + +D    +++V  Y K+G   EA
Sbjct: 107 ILPDAHTFPGVFTAAALNLGCNFDARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEA 166

Query: 160 KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL-------MLDGY 212
           +KL D MP +N+VSW +M+SGY        A   F  M    +V  NL       +L   
Sbjct: 167 RKLFDRMPERNLVSWTTMISGYASKQMAKEALGVFGLMR---LVEGNLNEFVFTSVLSAL 223

Query: 213 VELDDLDSAWKFFQKIPEQNVVSWVTMLSG----YARNGRMLEARRLFDQMPIRNVVAWN 268
           V  + +DS  +    + +  V+ +V++L+     YA+ G +  +  LF+    +N + W+
Sbjct: 224 VCPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWS 283

Query: 269 AMIAAYVQRGQIEEAARLFIEMP------------------------------------- 291
           A+I  Y Q G   +A +LF +M                                      
Sbjct: 284 ALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKS 343

Query: 292 --ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF 349
             E    + T ++D Y +     +AR+  D +   ++   T++I+GYVQN + +EA  ++
Sbjct: 344 GYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMY 403

Query: 350 DKIGTHDVV------------CWNV---------------------------MIKGYAQC 370
            ++    ++            C N+                           +   YA+C
Sbjct: 404 GRMQMRKILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGPELSIRSALSTMYAKC 463

Query: 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
           G ++E + +FR+M+ +DIV+WN MI+G +Q     +A+++FEE                 
Sbjct: 464 GSLEEGVLIFRRMLQRDIVSWNAMISGLSQNGHGREALELFEE----------------- 506

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
                          M  EG K DH T    LSAC+H+  ++ G
Sbjct: 507 ---------------MRLEGTKPDHITFVTVLSACSHMGIVKRG 535



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 141/307 (45%), Gaps = 26/307 (8%)

Query: 48  TYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM---- 103
           T  +++  YAK G   DARK F+ + + +LV W S+IAGY+ N K +EA  ++ +M    
Sbjct: 351 TATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRK 410

Query: 104 FRPDLFSWALMITCYTRKGELEKAREL------FDLLPNKEDTACWNAMVAGYAKIGNYN 157
             P+  + A ++   +    LE+ +++      + L P   + +  +A+   YAK G+  
Sbjct: 411 ILPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGP---ELSIRSALSTMYAKCGSLE 467

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYV 213
           E   +   M  ++IVSWN+M+SG ++NG    A + FE M     + D +++  +L    
Sbjct: 468 EGVLIFRRMLQRDIVSWNAMISGLSQNGHGREALELFEEMRLEGTKPDHITFVTVLSACS 527

Query: 214 ELDDLDSAWKFFQKIPEQ-----NVVSWVTMLSGYARNGRMLEARRLFDQMPI-RNVVAW 267
            +  +   W +F  + ++      V  +  M+   +R G++ EA+   +   I   +  W
Sbjct: 528 HMGIVKRGWAYFNMMFDEFCLVPRVEHYACMVDVLSRAGKLNEAKEFIESAIIDHGMCLW 587

Query: 268 NAMIAAYVQRGQIE---EAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
             ++ A       E    A    +E+  R   ++  +   Y  + +L +  R+   M  +
Sbjct: 588 RILLPACRNHCNYELGAYAGEKLMELGSRESSAYVLLSSIYTAMGRLADVVRVRRMMKVR 647

Query: 325 NIAAQTA 331
            +  +T 
Sbjct: 648 GVRKETG 654



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 147/329 (44%), Gaps = 30/329 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +T   K G +  ++ +F   S KN +T++++I+ Y++ G  + A KLF +M     V
Sbjct: 252 NALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFV 311

Query: 79  SWNSMIAGYLHN----DKVKEARE----LFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
                + G L        ++E ++    L    +   +++   ++  Y + G    AR+ 
Sbjct: 312 PSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKG 371

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEA----------KKLLDAMPSKNIVSWNSMLSG 180
           FD L  + D   W +++AGY + G   EA          K L + +   +++   S L+ 
Sbjct: 372 FDFLL-EPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAA 430

Query: 181 YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTML 240
             +  ++H  +  +    E  + S   +   Y +   L+     F+++ ++++VSW  M+
Sbjct: 431 LEQGKQIHARTIKYGLGPELSIRS--ALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMI 488

Query: 241 SGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
           SG ++NG   EA  LF++M +       + +  +++A    G ++     F  M +   +
Sbjct: 489 SGLSQNGHGREALELFEEMRLEGTKPDHITFVTVLSACSHMGIVKRGWAYFNMMFDEFCL 548

Query: 297 -----SWTTMIDGYVRIAKLDEARRLLDQ 320
                 +  M+D   R  KL+EA+  ++ 
Sbjct: 549 VPRVEHYACMVDVLSRAGKLNEAKEFIES 577



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 60/99 (60%), Gaps = 3/99 (3%)

Query: 470 ALQLGRQIHHLAIKSGYVNDL-FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
           +L+ G+ +H   IK  Y++   ++ N+LI  YAKCG +  A+L+F++    +V+S+N LI
Sbjct: 22  SLKKGQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAKLVFENLKHKNVVSYNCLI 81

Query: 529 AGYAINGN--ATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565
            G + NG+  +   ++LF  M+   + PD  TF GV +A
Sbjct: 82  HGLSHNGSKGSNFVLELFRRMIANNILPDAHTFPGVFTA 120



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 92/193 (47%), Gaps = 14/193 (7%)

Query: 23  TQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM----PQRNLV 78
           T   K G +EE + IF +M Q++ V++N+MIS  ++NG   +A +LFE+M     + + +
Sbjct: 458 TMYAKCGSLEEGVLIFRRMLQRDIVSWNAMISGLSQNGHGREALELFEEMRLEGTKPDHI 517

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARELFDL 133
           ++ ++++   H   VK     F+ MF      P +  +A M+   +R G+L +A+E  + 
Sbjct: 518 TFVTVLSACSHMGIVKRGWAYFNMMFDEFCLVPRVEHYACMVDVLSRAGKLNEAKEFIES 577

Query: 134 LPNKEDTACWNAMVAGYAKIGNYN----EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
                    W  ++       NY       +KL++ + S+   ++  + S YT  G +  
Sbjct: 578 AIIDHGMCLWRILLPACRNHCNYELGAYAGEKLME-LGSRESSAYVLLSSIYTAMGRLAD 636

Query: 190 ASKFFEAMEERDV 202
             +    M+ R V
Sbjct: 637 VVRVRRMMKVRGV 649


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  328 bits (841), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 190/609 (31%), Positives = 307/609 (50%), Gaps = 106/609 (17%)

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQMP---IRNVVAWNAMIAAYVQRGQIEEAARL 286
           E NV     +++ Y+R G + EA  +FD++    I +V++WN++++A+V+      A  L
Sbjct: 42  ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDL 101

Query: 287 FIEM-------------------------------PERNPVSWTT--------------M 301
           F +M                               P+   V                  +
Sbjct: 102 FSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNAL 161

Query: 302 IDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH----DV 357
           ID Y +   ++ A ++ + M +K++ +  AM++GY Q+     A ++F  +       D+
Sbjct: 162 IDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDM 221

Query: 358 VCWNVMIKGYAQCGRMDEAINLFRQMV--------------------------------- 384
           V W  +I GY+Q G   EA+N+FRQM+                                 
Sbjct: 222 VTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAY 281

Query: 385 ----------------NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMG-KRRNTVSWNALI 427
                           ++D++ +N +I  Y++ R    A  IF+++  + RN V+W  +I
Sbjct: 282 SLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMI 341

Query: 428 SGFLQNEFHLDALKIFVLMTQE--GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485
            G  Q     DALK+FV M  E  G   +  T++C L ACAHLAA+++G+QIH   ++  
Sbjct: 342 GGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHH 401

Query: 486 YVND--LFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
             +    FV N LI MY+KCG +  A  +F        ISW S++ GY ++G  +EA+ +
Sbjct: 402 QYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDI 461

Query: 544 FEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLS 603
           F++M   G  PD +TF+ VL ACSH G+VD GL  F+ M+  Y + P  EHYA  IDLL+
Sbjct: 462 FDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLA 521

Query: 604 RAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYAL 663
           R GRLD+A++ VK M ++P A +W  LL ACR+H N++L   A+ KL E+  +    Y L
Sbjct: 522 RFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTL 581

Query: 664 LSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNT 723
           +SN++A AGRW +V ++R  M+ SG +K+PGCSW++ +    +F  GD     + +I   
Sbjct: 582 ISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYAL 641

Query: 724 LKTLAAQIR 732
           L++L  +I+
Sbjct: 642 LESLIDRIK 650



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 128/519 (24%), Positives = 223/519 (42%), Gaps = 112/519 (21%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQK---NTVTYNSMISAYAKNGRVNDARKLF 69
           S VF  N  +    + G +EEA  IF +++Q+   + +++NS++SA+ K+     A  LF
Sbjct: 43  SNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLF 102

Query: 70  EQMP----------QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP----DLFSWALMI 115
            +M           + +++S  +++        V + +E+     R     D+F    +I
Sbjct: 103 SKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALI 162

Query: 116 TCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI---- 171
             Y + G +E A ++F+++  K D   WNAMVAGY++ GN+  A +L   M  +NI    
Sbjct: 163 DAYAKCGLMENAVKVFNMMEFK-DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDM 221

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAM---------------------------------- 197
           V+W ++++GY++ G  H A   F  M                                  
Sbjct: 222 VTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAY 281

Query: 198 ---------------EERDVVSWNLMLDGYVELDDLDSAWKFFQKIP--EQNVVSWVTML 240
                          E+ D++ +N ++D Y +     +A   F  IP  E+NVV+W  M+
Sbjct: 282 SLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMI 341

Query: 241 SGYARNGRMLEARRLFDQMPIRNV-VAWNA--------------------MIAAYVQRGQ 279
            G+A+ G   +A +LF +M      VA NA                     I AYV R  
Sbjct: 342 GGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHH 401

Query: 280 IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQN 339
             +++  F+            +I+ Y +   +D AR + D M  K+  + T+M++GY  +
Sbjct: 402 QYDSSAYFVA---------NCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMH 452

Query: 340 KRMDEANQIFDKIG----THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMI 395
            R  EA  IFDK+       D + + V++   + CG +D+ ++ F  M     +T     
Sbjct: 453 GRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEH 512

Query: 396 AGY-----AQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
             Y     A+  ++D A K  ++M      V W AL+S 
Sbjct: 513 YAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSA 551



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 103/427 (24%), Positives = 200/427 (46%), Gaps = 54/427 (12%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR---NLVSWNSMIAGYLHNDKVKEAREL 99
           + N    N++++ Y++ G + +A  +F+++ QR   +++SWNS+++ ++ +     A +L
Sbjct: 42  ESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDL 101

Query: 100 FDKMF----------RPDLFSWA-LMITCYTRKGELEKARELFDLLPNKE--DTACWNAM 146
           F KM           R D+ S   ++  C + K   +      + + N    D    NA+
Sbjct: 102 FSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNAL 161

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DV 202
           +  YAK G    A K+ + M  K++VSWN+M++GY+++G    A + F+ M +     D+
Sbjct: 162 IDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDM 221

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
           V+W  ++ GY +      A   F+++       N V+ +++LS  A  G   +   +   
Sbjct: 222 VTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEI-HA 280

Query: 259 MPIRN---------------VVAWNAMIAAYVQRGQIEEAARLFIEMP--ERNPVSWTTM 301
             ++N               ++ +NA+I  Y +    + A  +F ++P  ERN V+WT M
Sbjct: 281 YSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVM 340

Query: 302 IDGYVRIAKLDEARRLLDQM---PY---KNIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
           I G+ +    ++A +L  +M   PY    N    + ++        +    QI   +  H
Sbjct: 341 IGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRH 400

Query: 356 D------VVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVK 409
                      N +I  Y++CG +D A ++F  M  K  ++W +M+ GY    +  +A+ 
Sbjct: 401 HQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALD 460

Query: 410 IFEEMGK 416
           IF++M K
Sbjct: 461 IFDKMRK 467



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 126/533 (23%), Positives = 217/533 (40%), Gaps = 92/533 (17%)

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNK--EDTACWNAMVAGYAKIGNYNEAKK 161
           F  ++F    ++  Y+R G LE+A  +FD +  +  +D   WN++V+ + K  N   A  
Sbjct: 41  FESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALD 100

Query: 162 LLDAM-------PSK---------NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW 205
           L   M       P+          NI+     L    +  E+H            DV   
Sbjct: 101 LFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVH--GNAIRNGTFLDVFVG 158

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV- 264
           N ++D Y +   +++A K F  +  ++VVSW  M++GY+++G    A  LF  M   N+ 
Sbjct: 159 NALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIP 218

Query: 265 ---VAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-SWTTMIDGYVRIAKLDEARRLLDQ 320
              V W A+IA Y QRG   EA  +F +M     + +  T+I      A L    + ++ 
Sbjct: 219 LDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEI 278

Query: 321 MPY-----------------KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHD--VVCWN 361
             Y                 +++    A+I  Y + +    A  IFD I   +  VV W 
Sbjct: 279 HAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWT 338

Query: 362 VMIKGYAQCGRMDEAINLFRQMVN----------------------------KDIVTW-- 391
           VMI G+AQ G  ++A+ LF +M++                            K I  +  
Sbjct: 339 VMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVL 398

Query: 392 -------------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
                        N +I  Y++   +D A  +F+ M  +++ +SW ++++G+  +    +
Sbjct: 399 RHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSM-SQKSAISWTSMMTGYGMHGRGSE 457

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG-RQIHHLAIKSGYVNDLFVGNSLI 497
           AL IF  M + G   D  T    L AC+H   +  G      ++   G           I
Sbjct: 458 ALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAI 517

Query: 498 TMYAKCGRIQNAELLFKD--ADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
            + A+ GR+  A    KD   +P  V+ W +L++   ++ N   A     ++V
Sbjct: 518 DLLARFGRLDKAWKTVKDMPMEPTAVV-WVALLSACRVHSNVELAEHALNKLV 569



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 91/414 (21%), Positives = 181/414 (43%), Gaps = 76/414 (18%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF  N  I    K G +E A+K+F+ M  K+ V++N+M++ Y+++G    A +LF+ M +
Sbjct: 155 VFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRK 214

Query: 75  RN----LVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEK 126
            N    +V+W ++IAGY       EA  +F +M      P+  +   +++     G   +
Sbjct: 215 ENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQ 274

Query: 127 ARELF-------------DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP--SKNI 171
             E+              D     ED   +NA++  Y+K  ++  A+ + D +P   +N+
Sbjct: 275 GMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNV 334

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAM---------------------------------- 197
           V+W  M+ G+ + G+ + A K F  M                                  
Sbjct: 335 VTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIH 394

Query: 198 ------EERDVVSW---NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGR 248
                  + D  ++   N +++ Y +  D+D+A   F  + +++ +SW +M++GY  +GR
Sbjct: 395 AYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGR 454

Query: 249 MLEARRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WT 299
             EA  +FD+M     + + + +  ++ A    G +++    F  M     ++     + 
Sbjct: 455 GSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYA 514

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNIAAQ-TAMISGYVQNKRMDEANQIFDKI 352
             ID   R  +LD+A + +  MP +  A    A++S    +  ++ A    +K+
Sbjct: 515 YAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKL 568



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 95/193 (49%), Gaps = 26/193 (13%)

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
           M + G + DH TL   L AC  L + + G   H L   +G+ +++F+ N+L+ MY++CG 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 506 IQNAELLFKDADPV---DVISWNSLIAGYAINGNATEAIKLFEEMVM------EGVAPDP 556
           ++ A ++F +       DVISWNS+++ +  + NA  A+ LF +M +           D 
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 557 VTFIGVLSACSHVGLVDGGLKLFECMTEVYA--------IEPLVEHYACMIDLLSRAGRL 608
           ++ + +L AC       G LK      EV+         ++  V +   +ID  ++ G +
Sbjct: 121 ISIVNILPAC-------GSLKAVPQTKEVHGNAIRNGTFLDVFVGN--ALIDAYAKCGLM 171

Query: 609 DEAFEMVKGMKIK 621
           + A ++   M+ K
Sbjct: 172 ENAVKVFNMMEFK 184



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 9/167 (5%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S  F  N  I    K G V+ A  +F  MSQK+ +++ SM++ Y  +GR ++A  +F++M
Sbjct: 406 SAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKM 465

Query: 73  PQRNLV----SWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGE 123
            +   V    ++  ++    H   V +    FD M       P    +A  I    R G 
Sbjct: 466 RKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGR 525

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN 170
           L+KA +    +P +     W A+++      N   A+  L+ +   N
Sbjct: 526 LDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMN 572


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  328 bits (841), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 198/611 (32%), Positives = 313/611 (51%), Gaps = 62/611 (10%)

Query: 148 AGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL 207
           +  +     + A+ L D +P  N+ +WN+++  Y        +S  F+        S+ +
Sbjct: 67  SALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYAS------SSDPFQ--------SFVI 112

Query: 208 MLDGYVELDDLDSAWKF------FQKIPEQNVVSWV-----------------TMLSGYA 244
            LD   + +DL + + F        ++    V + V                 +++  Y 
Sbjct: 113 FLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYG 172

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDG 304
             G +  A RLF  +  ++VV+WN+MI+A+ Q    E+A  LF++M   N      M + 
Sbjct: 173 ACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMEREN-----VMPNS 227

Query: 305 YVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMI 364
              +  L    + LD             +  Y++ K +        K+   D+   N M+
Sbjct: 228 VTMVGVLSACAKKLD-------LEFGRWVCSYIERKGI--------KV---DLTLCNAML 269

Query: 365 KGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
             Y +CG +D+A  LF +M  +D+ +W  M+ GYA++   D A  +F  M   +   +WN
Sbjct: 270 DMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAM-PVKEIAAWN 328

Query: 425 ALISGFLQNEFHLDALKIF-VLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
            LIS + QN    +AL IF  L   +  K D  TL   LSACA L A+ LG  IH    +
Sbjct: 329 VLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKR 388

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
            G V +  + +SL+ MYAKCG ++ A  +F   +  DV  W+++IAG  ++G    AI L
Sbjct: 389 EGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDL 448

Query: 544 FEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLS 603
           F EM    V P+ VTF  VL ACSH GLVD G   F  M  VY + P ++HYACM+D+L 
Sbjct: 449 FFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILG 508

Query: 604 RAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYAL 663
           RAG L+EA E++  M   P+A +WG LLGAC +H N++LG +A ++L +LEP+      L
Sbjct: 509 RAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVL 568

Query: 664 LSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNT 723
           LSN++A+ GRW++V ++R  M  +  +K+PGCS IE    +H FL GD     ++ I + 
Sbjct: 569 LSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPLSSNIYSK 628

Query: 724 LKTLAAQIRNT 734
           L+ +A ++++ 
Sbjct: 629 LEEIATKLKSV 639



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 109/424 (25%), Positives = 192/424 (45%), Gaps = 66/424 (15%)

Query: 54  SAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDL 108
           SA +    ++ AR LF+Q+PQ NL +WN++I  Y  +    ++  +F  +       P+ 
Sbjct: 67  SALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNK 126

Query: 109 FSWALMITCYTRKGELEKAR------ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKL 162
           F++  +I   +   EL+ +R       +   L    D    N++V  Y   G+ + A++L
Sbjct: 127 FTFPFVIKAAS---ELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERL 183

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS------------------ 204
              +  K++VSWNSM+S + +      A + F  ME  +V+                   
Sbjct: 184 FKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDL 243

Query: 205 ----W-----------------NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGY 243
               W                 N MLD Y +   +D A K F ++PE++V SW  ML GY
Sbjct: 244 EFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGY 303

Query: 244 ARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM-----PERNPVSW 298
           A+ G    AR +F+ MP++ + AWN +I+AY Q G+ +EA  +F E+      + + V+ 
Sbjct: 304 AKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTL 363

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG----YVQNKRMDEANQIFDKIGT 354
            + +    ++  +D    +   +  + I     +IS     Y +   +++A ++F  +  
Sbjct: 364 VSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEE 423

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKI 410
            DV  W+ MI G    GR   AI+LF +M    V  + VT+  ++   +    +D+    
Sbjct: 424 RDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVF 483

Query: 411 FEEM 414
           F EM
Sbjct: 484 FHEM 487



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 161/331 (48%), Gaps = 22/331 (6%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G  ++  N  +   G  G +  A ++F  +S K+ V++NSMISA+A+     DA +LF +
Sbjct: 158 GMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLK 217

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARE--------LFDKMFRPDLFSWALMITCYTRKGE 123
           M + N++  +  + G L     K   E        +  K  + DL     M+  YT+ G 
Sbjct: 218 MERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGS 277

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK 183
           ++ A++LFD +P + D   W  M+ GYAK+G+Y+ A+ + +AMP K I +WN ++S Y +
Sbjct: 278 VDDAQKLFDEMPER-DVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQ 336

Query: 184 NGEMHLASKFFEAME-----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
           NG+   A   F  ++     + D V+    L    +L  +D        I  + +V    
Sbjct: 337 NGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCH 396

Query: 239 MLSG----YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER- 293
           ++S     YA+ G + +A  +F  +  R+V  W+AMIA     G+ + A  LF EM E  
Sbjct: 397 LISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAK 456

Query: 294 ---NPVSWTTMIDGYVRIAKLDEARRLLDQM 321
              N V++T ++        +DE R    +M
Sbjct: 457 VKPNSVTFTNVLCACSHAGLVDEGRVFFHEM 487



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 110/507 (21%), Positives = 198/507 (39%), Gaps = 123/507 (24%)

Query: 16  FNQNKKITQ--LGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLF---- 69
           F+ +K  T   L     ++ A  +F Q+ Q N  T+N++I AYA +     +  +F    
Sbjct: 58  FSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLL 117

Query: 70  ---EQMPQR---------------------------------NLVSWNSMIAGYLHNDKV 93
              E +P +                                 +L   NS++  Y     +
Sbjct: 118 DKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDL 177

Query: 94  KEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF------DLLPN----------- 136
             A  LF  +   D+ SW  MI+ + +    E A ELF      +++PN           
Sbjct: 178 SMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSAC 237

Query: 137 ---------------------KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN 175
                                K D    NAM+  Y K G+ ++A+KL D MP +++ SW 
Sbjct: 238 AKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWT 297

Query: 176 SMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFF-----QKIPE 230
            ML GY K G+   A   F AM  +++ +WN+++  Y +      A   F      KI +
Sbjct: 298 IMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAK 357

Query: 231 QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
            + V+ V+ LS  A+ G +             ++  W   I  Y++R  I     L    
Sbjct: 358 PDEVTLVSTLSACAQLGAI-------------DLGGW---IHVYIKREGIVLNCHLI--- 398

Query: 291 PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF- 349
                   ++++D Y +   L++A  +   +  +++   +AMI+G   + R   A  +F 
Sbjct: 399 --------SSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFF 450

Query: 350 ----DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-----VNKDIVTWNTMIAGYAQ 400
                K+  + V   NV+    +  G +DE    F +M     V  ++  +  M+    +
Sbjct: 451 EMQEAKVKPNSVTFTNVLC-ACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGR 509

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNALI 427
              +++A+++  EM    +   W AL+
Sbjct: 510 AGFLEEAMELINEMSTTPSASVWGALL 536



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 153/326 (46%), Gaps = 28/326 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +    K G V++A K+F +M +++  ++  M+  YAK G  + AR +F  MP + + 
Sbjct: 266 NAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIA 325

Query: 79  SWNSMIAGYLHNDKVKEARELFD-----KMFRPDLFSWALMITCYTRKGELEKARELFDL 133
           +WN +I+ Y  N K KEA  +F+     K+ +PD  +    ++   + G ++    +   
Sbjct: 326 AWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVY 385

Query: 134 LPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           +  +    +    +++V  YAK G+  +A ++  ++  +++  W++M++G   +G    A
Sbjct: 386 IKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAA 445

Query: 191 SKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKI-PEQNVVS----WVTMLS 241
              F  M+E  V    V++  +L        +D    FF ++ P   VV     +  M+ 
Sbjct: 446 IDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVD 505

Query: 242 GYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAY-----VQRGQIEEAARLFIEMPERNP 295
              R G + EA  L ++M    +   W A++ A      V+ G++  A+   +++  RN 
Sbjct: 506 ILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGEL--ASDQLLKLEPRNH 563

Query: 296 VSWTTMIDGYVRIA---KLDEARRLL 318
            +   + + Y +     K+ E R+L+
Sbjct: 564 GAIVLLSNIYAKTGRWEKVSELRKLM 589


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  328 bits (840), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 174/489 (35%), Positives = 286/489 (58%), Gaps = 9/489 (1%)

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA----RLFIEMPERNPVSWTTMIDGYVR 307
           A ++F+ +P  NV  +N +I   +Q  +  +A     ++ I     N  ++ T+      
Sbjct: 83  ALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTA 142

Query: 308 IAKLDEA----RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVM 363
               +E       ++ Q    ++  ++A I  Y     ++ A ++  + G  DV+C+N M
Sbjct: 143 AEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAM 202

Query: 364 IKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
           I GY +CG ++ A  LF  M +K++ +WN M++G A+   +++A ++F EM K +N +SW
Sbjct: 203 IDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEM-KEKNEISW 261

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
           +A+I G+++  ++ +AL++F +M +E  +     L+  L+ACA+L AL  GR IH     
Sbjct: 262 SAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNN 321

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
           +    D  +G +L+ MYAKCGR+  A  +F+  +  +V +WN++I G  ++G A +AI+L
Sbjct: 322 NSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIEL 381

Query: 544 FEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLS 603
           F +M  +   P+ +T +GVLSAC+H G+VD GL++F  M EVY IEP +EHY C++DLL 
Sbjct: 382 FFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLG 441

Query: 604 RAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYAL 663
           RAG L EA E++  M ++P+A +WG LLGACR H +++LG    + L ELEPQ +  YAL
Sbjct: 442 RAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYAL 501

Query: 664 LSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNT 723
           LSN++A AGRWD+V  VR  M+  G +   G S I+    +H F  GD    +   I   
Sbjct: 502 LSNIYARAGRWDDVANVRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSHPQMKNIYLM 561

Query: 724 LKTLAAQIR 732
           LK +  +++
Sbjct: 562 LKNMIKRLK 570



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 124/550 (22%), Positives = 242/550 (44%), Gaps = 84/550 (15%)

Query: 51  SMISAYAKN--GRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF---- 104
           +++  YA      +N A K+FE +P  N+  +N +I G L N++  +A   + KM     
Sbjct: 67  TLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHA 126

Query: 105 RPDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKK 161
           RP+ F++  +    T     E+  ++   +  +    D    +A +  Y   G    A++
Sbjct: 127 RPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARR 186

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA 221
           +L    + +++ +N+M+ GY K GE+  A + F +ME+++V SWN+M+ G  +   ++ A
Sbjct: 187 MLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEA 246

Query: 222 WKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIE 281
            + F ++ E+N +SW  M+ GY + G   EA  +F+ M                QR +I 
Sbjct: 247 RELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVM----------------QREEIR 290

Query: 282 EAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ-------TAMIS 334
              R F+          ++++     +  LD+ R +     Y N  +        TA++ 
Sbjct: 291 --PRKFV---------LSSVLAACANLGALDQGRWI---HAYVNNNSNSFDAVLGTALVD 336

Query: 335 GYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF----RQMVNKDIVT 390
            Y +  R+D A  +F+K+   +V  WN MI G    GR ++AI LF    +Q    + +T
Sbjct: 337 MYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGIT 396

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEM----GKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446
              +++  A    +D+ ++IF  M    G       +  ++    +     +A ++   M
Sbjct: 397 LLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSM 456

Query: 447 TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS-----LITMYA 501
             E   A    L   L AC     ++LG ++  + +      +L   NS     L  +YA
Sbjct: 457 PMEPSAAVWGAL---LGACRKHGDVELGERVGKILL------ELEPQNSGRYALLSNIYA 507

Query: 502 KCGR---IQNAELLFKD-----ADPVDVISWNSLIAGYAINGNATEAIK--------LFE 545
           + GR   + N   L K+     +  + +I ++ ++  + +   +   +K        + +
Sbjct: 508 RAGRWDDVANVRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSHPQMKNIYLMLKNMIK 567

Query: 546 EMVMEGVAPD 555
            + MEG +P+
Sbjct: 568 RLKMEGFSPN 577



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 172/382 (45%), Gaps = 57/382 (14%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           I   G  G VE A ++  +    + + +N+MI  Y K G V  A++LF  M  +N+ SWN
Sbjct: 172 IQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWN 231

Query: 82  SMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE--- 138
            M++G      ++EARELF++M   +  SW+ MI  Y + G  ++A E+F+++  +E   
Sbjct: 232 VMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRP 291

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG-----YTKNGEMHLASKF 193
                ++++A  A +G  ++  + + A  + N  S++++L       Y K G + +A   
Sbjct: 292 RKFVLSSVLAACANLGALDQG-RWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDV 350

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARNGRM 249
           FE ME+++V +WN M+ G       + A + F K+ +Q    N ++ + +LS  A +G +
Sbjct: 351 FEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMV 410

Query: 250 LEARRLFD------------------------------------QMPIRNVVA-WNAMIA 272
            E  R+F+                                     MP+    A W A++ 
Sbjct: 411 DEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLG 470

Query: 273 AYVQRGQI---EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
           A  + G +   E   ++ +E+  +N   +  + + Y R  + D+   +   M  + +   
Sbjct: 471 ACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTS 530

Query: 330 TAM----ISGYVQNKRMDEANQ 347
           T +      G V   +M + + 
Sbjct: 531 TGISMIDFDGVVHEFKMGDGSH 552



 Score = 42.7 bits (99), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 48/246 (19%), Positives = 101/246 (41%), Gaps = 40/246 (16%)

Query: 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYA--KCGRIQNAELLFKDADPVDVISWNS 526
            +L   +Q+H +A+++G+  D +V  +L+  YA      +  A  +F+     +V  +N 
Sbjct: 41  TSLHHLKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNI 100

Query: 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS------------------- 567
           +I G   N    +AI  + +M++    P+  T+  +  AC+                   
Sbjct: 101 IIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQG 160

Query: 568 ---HVGLVDGGLKLFECMTEVYAIEPLVEH--------YACMIDLLSRAGRLDEAFEMVK 616
               V +   G++++    EV     ++          +  MID   + G ++ A E+  
Sbjct: 161 LSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFW 220

Query: 617 GMKIKPNAGIWGTLLGACRMHQNIKLGRI--AVEKLSELEPQKTSCYALLSNMHAEAGRW 674
            M+ K N G W  ++         K G I  A E  +E++ +    ++ + + + + G +
Sbjct: 221 SMEDK-NVGSWNVMVSGM-----AKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYY 274

Query: 675 DEVEKV 680
            E  +V
Sbjct: 275 KEALEV 280


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  328 bits (840), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 212/689 (30%), Positives = 340/689 (49%), Gaps = 69/689 (10%)

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           F P  +   L++      G L +AR LFD +P++ +    N M++GY++ G  + A  L 
Sbjct: 30  FDPATYRLNLLLHSLISSGRLAQARALFDQMPHRNNAFSLNRMLSGYSRSGQLSAAHHLF 89

Query: 164 DAMPS--KNIVSWNSMLSGYTK--NGEMHLASKFFEAMEERDVVSWNLMLDGYVELDD-- 217
            + P   ++ V+W  M+  +          A   F  M    V    + +   + L    
Sbjct: 90  LSSPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPDRVTVATVLNLPPAS 149

Query: 218 --------LDSAWKFFQKIP--EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
                   + S   F  K+     NVV   T+L  Y ++G +  ARR+F +MP R+ V +
Sbjct: 150 GGTAAAIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTY 209

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARR---LLDQ 320
           NAM+    + G   EA  LF  M  +       +++T++     +  L   R+   L+ +
Sbjct: 210 NAMMMGCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHGLVAR 269

Query: 321 MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA--QCGRMDEAIN 378
               N+    +++  Y +   +DE  ++F ++   D V +NVMI GYA  +C  +   + 
Sbjct: 270 ATSSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASI--VLR 327

Query: 379 LFRQM--------------------------VNKDI-------------VTWNTMIAGYA 399
           LFR+M                          + K I             +  N +I  Y+
Sbjct: 328 LFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYS 387

Query: 400 QIRQMDDAVKIFEEMGKRRNT-VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           +   +D A   F  + K   T VSW A+I+G +QN    +AL++F  M + G   D +T 
Sbjct: 388 KCGMLDAAKTNF--INKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATF 445

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
           +  + A ++LA + LGRQ+H   I+SG+++ +F G++L+ MY KCG +  A   F +   
Sbjct: 446 SSTIKASSNLAMIGLGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPE 505

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
            + ISWN++I+ YA  G A  AIK+FE M+  G  PD VTF+ VLSACSH GL +  +K 
Sbjct: 506 RNSISWNAVISAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKY 565

Query: 579 FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQ 638
           FE M   Y I P  EHY+C+ID L R GR D+  EM+  M  + +  IW ++L +CR H 
Sbjct: 566 FELMEYEYGISPWKEHYSCVIDTLGRVGRFDKVQEMLGEMPFEDDPIIWSSILHSCRTHG 625

Query: 639 NIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWI 698
           N  L R+A EKL  +     + Y +LSN+ A+AG+W++   V+  M   G +K+ G SW+
Sbjct: 626 NQDLARVAAEKLFSMGSTDATPYVILSNIFAKAGKWEDAAGVKKIMRDRGLRKETGYSWV 685

Query: 699 EVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
           EVK+++++F S D       EI + L+ L
Sbjct: 686 EVKHKVYSFSSNDQTNPMITEIKDELERL 714



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 133/540 (24%), Positives = 234/540 (43%), Gaps = 106/540 (19%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTV-TYNSMISAYAKNGRVNDARKLFEQMP 73
            +  N  +  L  SGR+ +A  +F QM  +N   + N M+S Y+++G+++ A  LF   P
Sbjct: 34  TYRLNLLLHSLISSGRLAQARALFDQMPHRNNAFSLNRMLSGYSRSGQLSAAHHLFLSSP 93

Query: 74  Q--RNLVSWNSMIAGYLH--NDKVKEARELFDKMFR----PD------------------ 107
              R+ V+W  MI  +      +  +A  LF  M R    PD                  
Sbjct: 94  PHLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPDRVTVATVLNLPPASGGTA 153

Query: 108 -------LFSWAL--------------MITCYTRKGELEKARELFDLLPNKEDTACWNAM 146
                  L  +AL              ++  Y + G L  AR +F  +P++ D+  +NAM
Sbjct: 154 AAIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHR-DSVTYNAM 212

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIV----SWNSMLSGYTKNGEMHLASK---FFEAMEE 199
           + G +K G++ EA  L  AM  K +     +++++L+  T  G++ L  +          
Sbjct: 213 MMGCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHGLVARATS 272

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM 259
            +V   N +LD Y + D LD   K F ++ E++ VS+  M++GYA N       RLF +M
Sbjct: 273 SNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREM 332

Query: 260 ----------PIRNVVA-----------------------------WNAMIAAYVQRGQI 280
                     P  ++++                              NA+I  Y + G +
Sbjct: 333 QSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGML 392

Query: 281 EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340
           + A   FI   ++  VSWT MI G V+  + +EA +L   M    ++   A  S  ++  
Sbjct: 393 DAAKTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKAS 452

Query: 341 R----MDEANQIFDKI----GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWN 392
                +    Q+   +        V   + ++  Y +CG +DEA+  F +M  ++ ++WN
Sbjct: 453 SNLAMIGLGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWN 512

Query: 393 TMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
            +I+ YA   Q  +A+K+FE M   G + ++V++ +++S    N    + +K F LM  E
Sbjct: 513 AVISAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYE 572



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 196/410 (47%), Gaps = 32/410 (7%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
             N V  N+++ AY K+G +  AR++F++MP R+ V++N+M+ G        EA +LF  
Sbjct: 172 HSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAA 231

Query: 103 MFRPDL----FSWALMITCYTRKGELEKARELFDLLPNKEDTACW--NAMVAGYAKIGNY 156
           M R  L    F+++ ++T  T  G+L   R++  L+     +  +  N+++  Y+K    
Sbjct: 232 MRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHGLVARATSSNVFVNNSLLDFYSKCDCL 291

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLD-- 210
           +E KKL   M  ++ VS+N M++GY  N    +  + F  M+    +R  + +  +L   
Sbjct: 292 DEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVA 351

Query: 211 ---GYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
               ++ +     A      +  +++V    ++  Y++ G +  A+  F     +  V+W
Sbjct: 352 GSVPHIGIGKQIHAQLVLLGLSSEDLVG-NALIDMYSKCGMLDAAKTNFINKNDKTGVSW 410

Query: 268 NAMIAAYVQRGQIEEAARLFIEM------PERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
            AMI   VQ GQ EEA +LF  M      P+R   ++++ I     +A +   R+L   +
Sbjct: 411 TAMITGCVQNGQQEEALQLFCGMRRAGLSPDR--ATFSSTIKASSNLAMIGLGRQLHSYL 468

Query: 322 ----PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAI 377
                  ++ + +A++  Y +   +DEA Q FD++   + + WN +I  YA  G+   AI
Sbjct: 469 IRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAI 528

Query: 378 NLFRQMV----NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
            +F  M+      D VT+ ++++  +     ++ +K FE M        W
Sbjct: 529 KMFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPW 578



 Score = 99.4 bits (246), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 89/415 (21%), Positives = 177/415 (42%), Gaps = 67/415 (16%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           + ++ +  N    NS++  Y+K   +++ +KLF +M +R+ VS+N MIAGY  N      
Sbjct: 266 LVARATSSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIV 325

Query: 97  RELFDKM----FRPDLFSWALMITCYTRKGELEKAREL---FDLLPNKEDTACWNAMVAG 149
             LF +M    F      +A +++       +   +++     LL    +    NA++  
Sbjct: 326 LRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDM 385

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE---------- 199
           Y+K G  + AK        K  VSW +M++G  +NG+   A + F  M            
Sbjct: 386 YSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATF 445

Query: 200 -----------------------------RDVVSWNLMLDGYVELDDLDSAWKFFQKIPE 230
                                          V S + +LD Y +   LD A + F ++PE
Sbjct: 446 SSTIKASSNLAMIGLGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPE 505

Query: 231 QNVVSWVTMLSGYARNGRMLEARRLFDQMPI----RNVVAWNAMIAAYVQRGQIEEAARL 286
           +N +SW  ++S YA  G+   A ++F+ M       + V + ++++A    G  EE  + 
Sbjct: 506 RNSISWNAVISAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKY 565

Query: 287 FIEMPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKR 341
           F  M     +S     ++ +ID   R+ + D+ + +L +MP+++      +I   + +  
Sbjct: 566 FELMEYEYGISPWKEHYSCVIDTLGRVGRFDKVQEMLGEMPFED----DPIIWSSILHSC 621

Query: 342 MDEANQIFDKI--------GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI 388
               NQ   ++        G+ D   + ++   +A+ G+ ++A  + + M ++ +
Sbjct: 622 RTHGNQDLARVAAEKLFSMGSTDATPYVILSNIFAKAGKWEDAAGVKKIMRDRGL 676



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 104/200 (52%), Gaps = 12/200 (6%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S VF+ +  +    K G ++EA++ F +M ++N++++N++ISAYA  G+  +A K+FE M
Sbjct: 475 SSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMFEGM 534

Query: 73  P----QRNLVSWNSMIAGYLHNDKVKEARELFDKM-FRPDLFSWALMITCYT----RKGE 123
                + + V++ S+++   HN   +E  + F+ M +   +  W    +C      R G 
Sbjct: 535 LCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRVGR 594

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK---KLLDAMPSKNIVSWNSMLSG 180
            +K +E+   +P ++D   W++++      GN + A+   + L +M S +   +  + + 
Sbjct: 595 FDKVQEMLGEMPFEDDPIIWSSILHSCRTHGNQDLARVAAEKLFSMGSTDATPYVILSNI 654

Query: 181 YTKNGEMHLASKFFEAMEER 200
           + K G+   A+   + M +R
Sbjct: 655 FAKAGKWEDAAGVKKIMRDR 674


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  328 bits (840), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 210/721 (29%), Positives = 351/721 (48%), Gaps = 58/721 (8%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PD 107
           ++++Y   G   DA  + E++     V WN ++  ++    +  A  +  +M R    PD
Sbjct: 89  VVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPD 148

Query: 108 LFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLD 164
            F+    +            R L  L+     + +    NA+VA Y++ G+  +A  + D
Sbjct: 149 HFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFD 208

Query: 165 AMPSK---NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA 221
            +  K   +++SWNS+++ + K      A + F  M      S  +      E  D+ S 
Sbjct: 209 EITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEM------SMIVHEKATNERSDIISI 262

Query: 222 WKFFQKIPEQNVVSWVTMLSGYA-RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQI 280
                       +  +  +  YA RNG   +A               NA+I  Y + G +
Sbjct: 263 VNILPACASLKALPQIKEIHSYAIRNGTFADA------------FVCNALIDTYAKCGSM 310

Query: 281 EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGY 336
            +A ++F  M  ++ VSW  M+ GY +      A  L + M  +NI       +A+I+GY
Sbjct: 311 NDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGY 370

Query: 337 VQNKRMDEANQIFDKI----GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT-- 390
            Q     EA   F ++       + V    ++   A  G + + + +    + K +++  
Sbjct: 371 AQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLD 430

Query: 391 --------------WNTMIAGYAQIRQMDDAVKIFEEMGKR-RNTVSWNALISGFLQNEF 435
                         +N +I  Y++ R    A  IF+ + +R RN V+W  +I G+ Q   
Sbjct: 431 NDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGD 490

Query: 436 HLDALKIFVLMTQE--GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND--LF 491
             DALKIF  M  +      +  T++C L ACAHLAAL++G+QIH    +         F
Sbjct: 491 SNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYF 550

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
           V N LI MY+KCG +  A  +F      + +SW S+++GY ++G   EA+ +F++M   G
Sbjct: 551 VANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAG 610

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
             PD ++F+ +L ACSH G+VD GL  F+ M   Y +    EHYAC+IDLL+R GRLD+A
Sbjct: 611 FVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKA 670

Query: 612 FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEA 671
           ++ ++ M ++P+A IW  LL ACR+H N++L   A+ KL  ++ +    Y L+SN++A A
Sbjct: 671 WKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANA 730

Query: 672 GRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
            RW +V ++R  M+ SG +K+PGCSW++ K    +F  GD     + EI + L+ L  +I
Sbjct: 731 RRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRI 790

Query: 732 R 732
           +
Sbjct: 791 K 791



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 126/512 (24%), Positives = 220/512 (42%), Gaps = 125/512 (24%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR---NLVSWNSMIAGYLHNDKVKEAREL 99
           + N    N++++ Y++ G + DA  +F+++ ++   +++SWNS++A ++     + A EL
Sbjct: 181 ESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALEL 240

Query: 100 FDKMF----------RPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAM 146
           F +M           R D+ S   ++        L + +E+           D    NA+
Sbjct: 241 FSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNAL 300

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DV 202
           +  YAK G+ N+A K+ + M  K++VSWN+M++GYT++G    A + FE M +     DV
Sbjct: 301 IDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDV 360

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSGYARNGRMLE------- 251
           ++W+ ++ GY +      A   FQ++     E N V+ +++LS  A  G + +       
Sbjct: 361 ITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAY 420

Query: 252 ----------------------------------------ARRLFDQMPI--RNVVAWNA 269
                                                   AR +FD +P   RNVV W  
Sbjct: 421 SLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTV 480

Query: 270 MIAAYVQRGQIEEAARLFIEMPERN----PVSWT-------------------------- 299
           MI  Y Q G   +A ++F EM  +     P ++T                          
Sbjct: 481 MIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTR 540

Query: 300 -------------TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEAN 346
                         +ID Y +   +D AR + D MP +N  + T+M+SGY  + R  EA 
Sbjct: 541 HHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEAL 600

Query: 347 QIFDKIG----THDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVT----WNTMIAG 397
            IFDK+       D + + V++   +  G +D+ +N F  M  + D+V     +  +I  
Sbjct: 601 DIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDL 660

Query: 398 YAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
            A+  ++D A K  +EM    + V W AL+S 
Sbjct: 661 LARCGRLDKAWKTIQEMPMEPSAVIWVALLSA 692



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 166/384 (43%), Gaps = 77/384 (20%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F  N  I    K G + +A+K+F+ M  K+ V++N+M++ Y ++G    A +LFE M + 
Sbjct: 295 FVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKE 354

Query: 76  NL----VSWNSMIAGYLHNDKVKEARELFDKMF----RPD-------------------- 107
           N+    ++W+++IAGY      +EA + F +M      P+                    
Sbjct: 355 NIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQG 414

Query: 108 ---------------------------LFSWALMITCYTRKGELEKARELFDLLPNKE-D 139
                                      L  +  +I  Y++    + AR +FD +P +E +
Sbjct: 415 MEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERN 474

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKN------------IVSWNSMLSGYTKNGEM 187
              W  M+ GYA+ G+ N+A K+   M SK             I+   + L+      ++
Sbjct: 475 VVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQI 534

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
           H         E       N ++D Y +  D+D+A   F  +P++N VSW +M+SGY  +G
Sbjct: 535 HAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHG 594

Query: 248 RMLEARRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-----SW 298
           R  EA  +FD+M     + + +++  ++ A    G +++    F  M     V      +
Sbjct: 595 RGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHY 654

Query: 299 TTMIDGYVRIAKLDEARRLLDQMP 322
             +ID   R  +LD+A + + +MP
Sbjct: 655 ACVIDLLARCGRLDKAWKTIQEMP 678



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 146/321 (45%), Gaps = 28/321 (8%)

Query: 47  VTYNSMISAYAKNGRVNDARKLFEQMP--QRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           + YN++I  Y+K      AR +F+ +P  +RN+V+W  MI GY       +A ++F +M 
Sbjct: 443 MVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMI 502

Query: 105 R------PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTA-----CWNAMVAGYAKI 153
                  P+ ++ + ++        L   +++   +    +         N ++  Y+K 
Sbjct: 503 SKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKC 562

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLML 209
           G+ + A+ + D+MP +N VSW SM+SGY  +G    A   F+ M++     D +S+ ++L
Sbjct: 563 GDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLL 622

Query: 210 DGYVELDDLDSAWKFFQKI-PEQNVVS----WVTMLSGYARNGRMLEARRLFDQMPIR-N 263
                   +D    +F  +  + +VV+    +  ++   AR GR+ +A +   +MP+  +
Sbjct: 623 YACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPS 682

Query: 264 VVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
            V W A+++A      +   E A    + M   N  S+T + + Y    +  +  R+   
Sbjct: 683 AVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQL 742

Query: 321 MPYKNIAAQTAMISGYVQNKR 341
           M    I  +      +VQ K+
Sbjct: 743 MKKSGIKKRPG--CSWVQGKK 761



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 9/146 (6%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S  F  N  I    K G V+ A  +F  M ++N V++ SM+S Y  +GR  +A  +F++M
Sbjct: 547 SVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKM 606

Query: 73  PQRNLV----SWNSMIAGYLHNDKVKEARELFDKMFRP-DLFS----WALMITCYTRKGE 123
            +   V    S+  ++    H+  V +    FD M R  D+ +    +A +I    R G 
Sbjct: 607 QKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGR 666

Query: 124 LEKARELFDLLPNKEDTACWNAMVAG 149
           L+KA +    +P +     W A+++ 
Sbjct: 667 LDKAWKTIQEMPMEPSAVIWVALLSA 692



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 24/180 (13%)

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
           YV+   +G  ++  Y  CG  ++A  + +   P   + WN L+  +   G+   AI +  
Sbjct: 79  YVSPKSLGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSC 138

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL--------FECMTEVYAIEPLVEHYAC 597
            M+  G  PD  T    L AC  +     G  L        FE  + V+    LV  Y  
Sbjct: 139 RMLRAGTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFE--SNVFVCNALVAMY-- 194

Query: 598 MIDLLSRAGRLDEA---FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE 654
                SR G L++A   F+ +    I  +   W +++ A   H      R A+E  SE+ 
Sbjct: 195 -----SRCGSLEDASLVFDEITRKGID-DVISWNSIVAA---HVKGSNPRTALELFSEMS 245


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 178/522 (34%), Positives = 273/522 (52%), Gaps = 75/522 (14%)

Query: 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
           +F     +NP     ++  Y    +    R++ D+M  +N+     MI  YV N R D+ 
Sbjct: 44  IFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDG 103

Query: 346 NQIFD--------------------------------------KIG-THDVVCWNVMIKG 366
             +F                                       K+G   ++   N +I  
Sbjct: 104 LLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAM 163

Query: 367 YAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMG----------- 415
           Y +CG + EA  +F +M+ KD+V+WN+M+AGYA   + DDA++I  EM            
Sbjct: 164 YGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTM 223

Query: 416 -------------------------KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
                                    +R+N +SWN +I  +++N     A+ +++ M +  
Sbjct: 224 ASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCR 283

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
            + D  T A  L AC  L+AL LGR+IH    K     +L + NSLI MYA+CG + +A+
Sbjct: 284 VEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAK 343

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
            +F      DV SW SLI+ Y + G    A+ LF EM+  G APD + F+ +LSACSH G
Sbjct: 344 RVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSG 403

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
           L+D G   F+ MT+ Y I P +EHYAC++DLL RAGR+DEA+ ++K M I+PN  +W TL
Sbjct: 404 LLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATL 463

Query: 631 LGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQ 690
           L +CR+  N+ +G +A + L +L P+++  Y LLSN++A+AGRW EV ++R  M+    +
Sbjct: 464 LSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKIR 523

Query: 691 KQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           K PG S +E+ NQ+HTFL+GD    ++ EI   L  L A+++
Sbjct: 524 KTPGISNVELNNQVHTFLAGDTSHPQSKEIYEELGVLVAKMK 565



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/418 (22%), Positives = 191/418 (45%), Gaps = 49/418 (11%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
            +QN  I  L K   +     IF   S +N      ++ +YA  G     RK+F++M  R
Sbjct: 28  LDQNPDIKTLKKLHTM-----IFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDR 82

Query: 76  NLVSWNSMIAGYLHNDKVKEA----RELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
           N+V +N MI  Y++N +  +     RE+ +  FRPD +++  ++   +    L     + 
Sbjct: 83  NVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIH 142

Query: 132 -DLLPNKEDTACW--NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
            D+L    D   +  N ++A Y K G   EA+++ D M  K++VSWNSM++GY  N    
Sbjct: 143 GDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFD 202

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGR 248
            A +    ME+                         + + P+   ++ +        +  
Sbjct: 203 DALEICREMED-------------------------YGQKPDGCTMASLMPAVANTSSEN 237

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDG 304
           +L   ++F  +  +N+++WN MI  Y++     +A  L+++M     E + +++ +++  
Sbjct: 238 VLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPA 297

Query: 305 YVRIAKLDEARRLLDQMPYK----NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW 360
              ++ L   RR+ + +  K    N+  + ++I  Y +   +D+A ++FD++   DV  W
Sbjct: 298 CGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASW 357

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNK----DIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
             +I  Y   G+   A+ LF +M+N     D + +  +++  +    +D+    F++M
Sbjct: 358 TSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQM 415



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 106/428 (24%), Positives = 175/428 (40%), Gaps = 85/428 (19%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM------PQR-------------- 75
           K+F +MS +N V YN MI +Y  N R +D   +F +M      P                
Sbjct: 74  KVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSE 133

Query: 76  -------------------NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMIT 116
                              NL   N +IA Y     + EAR +FD+M   D+ SW  M+ 
Sbjct: 134 NLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVA 193

Query: 117 CYTRK----GELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYN--EAKKLLDAMPSKN 170
            Y         LE  RE+ D    K D     +++   A   + N    +K+   +  KN
Sbjct: 194 GYAHNMRFDDALEICREMED-YGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKN 252

Query: 171 IVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
           ++SWN M+  Y KN     A   +  ME    E D +++  +L    +L  L    +  +
Sbjct: 253 LISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHE 312

Query: 227 KIPEQ----NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEE 282
            + ++    N++   +++  YAR G + +A+R+FD+M  R+V +W ++I+AY   GQ   
Sbjct: 313 YVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCN 372

Query: 283 AARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
           A  LF EM       + +++  ++        LDE R    Q           M   Y  
Sbjct: 373 AVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQ-----------MTDDYRI 421

Query: 339 NKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAG 397
             R++    + D +G               + GR+DEA N+ +QM +  +   W T+++ 
Sbjct: 422 TPRIEHYACLVDLLG---------------RAGRVDEAYNIIKQMPIEPNERVWATLLSS 466

Query: 398 YAQIRQMD 405
                 MD
Sbjct: 467 CRVFTNMD 474



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 139/313 (44%), Gaps = 54/313 (17%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDA--------- 65
           +F  N  I   GK G + EA ++F +M  K+ V++NSM++ YA N R +DA         
Sbjct: 154 LFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMED 213

Query: 66  ----------------------------RKLFEQMPQRNLVSWNSMIAGYLHNDKVKEAR 97
                                        K+F  + ++NL+SWN MI  Y+ N    +A 
Sbjct: 214 YGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAV 273

Query: 98  ELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGY 150
           +L+ +M      PD  ++A ++        L   R + + +  K+   +    N+++  Y
Sbjct: 274 DLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMY 333

Query: 151 AKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSWN 206
           A+ G  ++AK++ D M  +++ SW S++S Y   G+   A   F  M    +  D +++ 
Sbjct: 334 ARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFV 393

Query: 207 LMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPI 261
            +L        LD    +F+++ +   ++     +  ++    R GR+ EA  +  QMPI
Sbjct: 394 AILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPI 453

Query: 262 R-NVVAWNAMIAA 273
             N   W  ++++
Sbjct: 454 EPNERVWATLLSS 466


>gi|449461160|ref|XP_004148310.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g18840-like [Cucumis
            sativus]
          Length = 1096

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 205/650 (31%), Positives = 357/650 (54%), Gaps = 25/650 (3%)

Query: 104  FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
            F P +F    +IT Y + G L  A++LFD +P + +   WNA++A Y K  N  +A+ L 
Sbjct: 442  FTPTIFMSNQLITFYAKHGLLNDAQKLFDEMPER-NVFSWNAIIAAYVKSHNLRQARALF 500

Query: 164  DAMPSKNIVSWNSMLSGYTK-NGEMHLASKFFEAMEER------DVVSWNLMLDGYVELD 216
            D+   K++V++NSMLSGY + +G    A  FF  M+        D  +   ML+   +L 
Sbjct: 501  DSAVCKDLVTYNSMLSGYARSDGYQGQALGFFMEMQTAPDMIRIDEFTLITMLNLTAKLC 560

Query: 217  DLDSAWKF----FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM-PIRNVVAWNAMI 271
             +    +      +   +  V +  +++  Y++ G   EA R++     + + V+ NAM+
Sbjct: 561  VISYGKQLHSFMLKTANDLTVFAASSLIDMYSKCGFFKEACRVYYGCGEVVDSVSRNAMV 620

Query: 272  AAYVQRGQIEEAARLF-IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA--- 327
            AA  + G+I+ A  LF  E+ + + V+W TMI G+V+    +E+ +L  +M  + +    
Sbjct: 621  AACCREGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYEEESLKLFVRMADEKVGWNE 680

Query: 328  -AQTAMISGYVQNKRMDEANQIF-----DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
                +++S     + +    ++      +++  +  +C   ++  Y +C  M  A ++  
Sbjct: 681  HTFASVLSACSNLRSLKLGKEVHAYVLKNRLIANPFICSG-LVDVYCKCNNMRYAKSVNS 739

Query: 382  QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALK 441
            ++  +++ +  +MI GY+    M +A K+F+ + ++ N+  W AL  G+++ +      +
Sbjct: 740  ELRMQNVYSITSMIVGYSSQGNMAEARKLFDSLDEK-NSAVWTALFFGYVKLQQCEAVFE 798

Query: 442  IFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYA 501
            +     +E K  D   L   + ACA  AAL  G+QIH   +++G   D  + +SL+ MY+
Sbjct: 799  LLSEYRKEAKVPDVLILISIIGACAIQAALVPGKQIHSYMLRAGIKLDTKLTSSLVDMYS 858

Query: 502  KCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIG 561
            KCG I  AE +F++    D I +N +IAGYA +G   EA++LF+EMV  G  PD +TF+ 
Sbjct: 859  KCGSIIYAERIFREVTDKDSIIYNIMIAGYAHHGWENEAVQLFKEMVKHGFKPDAITFVA 918

Query: 562  VLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIK 621
            +LSAC H GLV+ G   F+ M+  Y I P ++HYACMIDL  RA +LD+A E ++ + I+
Sbjct: 919  LLSACRHGGLVELGEHFFDSMSNDYNICPEIDHYACMIDLYGRANQLDKALEFMRKIPIQ 978

Query: 622  PNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVR 681
             +A IWG  L ACR++ N +L R A ++L  +E +  S Y  L+N++A  G W+E+ ++R
Sbjct: 979  LDAVIWGAFLNACRINGNAELARKAEDELLVIEGENGSRYVQLANVYAAEGNWEEMGRIR 1038

Query: 682  VSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
              M+G   +K  GCSW+ V+++ H F+SGD    +   I +TL +L  ++
Sbjct: 1039 KKMKGKEVKKNAGCSWVFVESKFHVFISGDRFHSKNEAIYSTLASLTDEL 1088



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 149/606 (24%), Positives = 272/606 (44%), Gaps = 108/606 (17%)

Query: 15   VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            +F  N+ IT   K G + +A K+F +M ++N  ++N++I+AY K+  +  AR LF+    
Sbjct: 446  IFMSNQLITFYAKHGLLNDAQKLFDEMPERNVFSWNAIIAAYVKSHNLRQARALFDSAVC 505

Query: 75   RNLVSWNSMIAGYLHNDKVK-EARELF------DKMFRPDLFSWALMITCYTRKGELEKA 127
            ++LV++NSM++GY  +D  + +A   F        M R D F+   M+    +   +   
Sbjct: 506  KDLVTYNSMLSGYARSDGYQGQALGFFMEMQTAPDMIRIDEFTLITMLNLTAKLCVISYG 565

Query: 128  RELFD-LLPNKEDTACWNA--MVAGYAKIGNYNEAKKLLDAMPS-KNIVSWNSMLSGYTK 183
            ++L   +L    D   + A  ++  Y+K G + EA ++        + VS N+M++   +
Sbjct: 566  KQLHSFMLKTANDLTVFAASSLIDMYSKCGFFKEACRVYYGCGEVVDSVSRNAMVAACCR 625

Query: 184  NGEMHLASKFF-EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVT 238
             GE+ +A   F + +E+ DVV+WN M+ G+V+    + + K F ++ ++ V     ++ +
Sbjct: 626  EGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYEEESLKLFVRMADEKVGWNEHTFAS 685

Query: 239  MLSG-----------------------------------YARNGRMLEARRLFDQMPIRN 263
            +LS                                    Y +   M  A+ +  ++ ++N
Sbjct: 686  VLSACSNLRSLKLGKEVHAYVLKNRLIANPFICSGLVDVYCKCNNMRYAKSVNSELRMQN 745

Query: 264  VVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ--- 320
            V +  +MI  Y  +G + EA +LF  + E+N   WT +  GYV++ + +    LL +   
Sbjct: 746  VYSITSMIVGYSSQGNMAEARKLFDSLDEKNSAVWTALFFGYVKLQQCEAVFELLSEYRK 805

Query: 321  ---MPYKNI--------AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ 369
               +P   I        A Q A++ G   +  M  A    D   T        ++  Y++
Sbjct: 806  EAKVPDVLILISIIGACAIQAALVPGKQIHSYMLRAGIKLDTKLTSS------LVDMYSK 859

Query: 370  CGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
            CG +  A  +FR++ +KD + +N MIAGYA     ++AV++F+EM K             
Sbjct: 860  CGSIIYAERIFREVTDKDSIIYNIMIAGYAHHGWENEAVQLFKEMVKH------------ 907

Query: 430  FLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY--V 487
                                G K D  T    LSAC H   ++LG      ++ + Y   
Sbjct: 908  --------------------GFKPDAITFVALLSACRHGGLVELGEHFFD-SMSNDYNIC 946

Query: 488  NDLFVGNSLITMYAKCGRIQNA-ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEE 546
             ++     +I +Y +  ++  A E + K    +D + W + +    INGNA  A K  +E
Sbjct: 947  PEIDHYACMIDLYGRANQLDKALEFMRKIPIQLDAVIWGAFLNACRINGNAELARKAEDE 1006

Query: 547  -MVMEG 551
             +V+EG
Sbjct: 1007 LLVIEG 1012



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 4/95 (4%)

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
           L+ G   H   IKSG+   +F+ N LIT YAK G + +A+ LF +    +V SWN++IA 
Sbjct: 427 LKHGLLCHLQGIKSGFTPTIFMSNQLITFYAKHGLLNDAQKLFDEMPERNVFSWNAIIAA 486

Query: 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565
           Y  + N  +A  LF+      V  D VT+  +LS 
Sbjct: 487 YVKSHNLRQARALFD----SAVCKDLVTYNSMLSG 517


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 178/510 (34%), Positives = 287/510 (56%), Gaps = 15/510 (2%)

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE--RN 294
           + ++  Y+  G    AR +FD+   +NVV +N MI +YV      EA  +F  M     N
Sbjct: 75  IKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFN 134

Query: 295 PVSWT--TMIDGYVRIAKLDEARRLLDQMPY----KNIAAQTAMISGYVQNKRMDEANQI 348
           P  +T   ++     +  L    ++ D +       N+    A+++ Y +   + EA ++
Sbjct: 135 PDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKV 194

Query: 349 FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTM--IAGYAQIR 402
            D++   DVV WN M+ GYAQ G+ D+A+ + ++M    +N D  T  ++  +  Y  + 
Sbjct: 195 LDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLE 254

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
            +     +FE M K+ N +SWN +I+ ++ N    +A+ +F+ M + G K D  T+A  L
Sbjct: 255 NVQYIHNMFERMTKK-NLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLL 313

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
            AC  L+AL LGR++H    K     +L + N+L+ MYAKCG ++ A  +F      DV+
Sbjct: 314 PACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVV 373

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           SW S+++ Y  +G   +A+ LF +M+  G  PD + F+ VLSACSH GL+D G   F  M
Sbjct: 374 SWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMM 433

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKL 642
           TE Y I P +EH+ACM+DL  RAG ++EA+  +K M ++PN  +WG LL ACR+H  + +
Sbjct: 434 TEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDI 493

Query: 643 GRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKN 702
           G +A + L +L P+++  Y LLSN++A+AG W +V  VR +M+  G +K PG S +E+  
Sbjct: 494 GLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNG 553

Query: 703 QIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           Q+HTFL+GD    +   I   L  L  +++
Sbjct: 554 QVHTFLAGDQYHPQAKNIYGELDVLVGKMK 583



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 202/413 (48%), Gaps = 40/413 (9%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPD 107
           ++ AY+  G  + AR +F++  ++N+V +N MI  Y++N+   EA  +F  M    F PD
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136

Query: 108 LFSWALMITCYTRKGELEKARELFD-LLPNKEDTACW--NAMVAGYAKIGNYNEAKKLLD 164
            +++  ++   +    L    ++ D ++    DT  +  NA+VA Y K G   EA+K+LD
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLD 196

Query: 165 AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG-----------YV 213
            MP +++VSWNSM++GY ++G+   A    E  +E D  S NL  D            Y 
Sbjct: 197 QMPYRDVVSWNSMVAGYAQSGQFDDA---LEICKEMD--SLNLNHDAGTMASLSPVVCYT 251

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP----IRNVVAWNA 269
            L+++      F+++ ++N++SW  M++ Y  N    EA  LF QM       + V   +
Sbjct: 252 SLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIAS 311

Query: 270 MIAAYVQRGQIEEAARL--FIEMPERNP--VSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           ++ A      +    RL  +IE     P  +    ++D Y +   L+EAR + D+M  ++
Sbjct: 312 LLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRD 371

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKI----GTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
           + + T+M+S Y ++ +  +A  +F K+       D + +  ++   +  G +D+  + FR
Sbjct: 372 VVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFR 431

Query: 382 QMVNK-----DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
            M  +      I  +  M+  + +  ++++A    ++M    N   W AL+S 
Sbjct: 432 MMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSA 484



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 161/325 (49%), Gaps = 29/325 (8%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           N    N++++ Y K G + +ARK+ +QMP R++VSWNSM+AGY  + +  +A E+  +M 
Sbjct: 171 NLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMD 230

Query: 104 ---FRPDLFSWALM--ITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNE 158
                 D  + A +  + CYT    ++    +F+ +  K++   WN M+A Y      NE
Sbjct: 231 SLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERM-TKKNLISWNVMIAIYVNNSMPNE 289

Query: 159 AKKLLDAMPS----KNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLD 210
           A  L   M       + V+  S+L        + L  +  + +E    + +++  N +LD
Sbjct: 290 AVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLD 349

Query: 211 GYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM------PIRNV 264
            Y +   L+ A   F K+  ++VVSW +M+S Y R+G+  +A  LF +M      P  + 
Sbjct: 350 MYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNP--DS 407

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-----SWTTMIDGYVRIAKLDEARRLLD 319
           +A+ ++++A    G +++    F  M E+  +      +  M+D + R  +++EA   + 
Sbjct: 408 IAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIK 467

Query: 320 QMPYK-NIAAQTAMISGYVQNKRMD 343
           QMP + N     A++S    + +MD
Sbjct: 468 QMPMEPNERVWGALLSACRVHSKMD 492



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 143/316 (45%), Gaps = 60/316 (18%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDA--------- 65
           +F  N  +   GK G + EA K+  QM  ++ V++NSM++ YA++G+ +DA         
Sbjct: 172 LFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDS 231

Query: 66  ----------------------------RKLFEQMPQRNLVSWNSMIAGYLHNDKVKEAR 97
                                         +FE+M ++NL+SWN MIA Y++N    EA 
Sbjct: 232 LNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAV 291

Query: 98  ELFDKM----FRPDLFSWA-LMITCYTRKG-----ELEKARELFDLLPNKEDTACWNAMV 147
            LF +M     +PD  + A L+  C           L K  E  +L PN       NA++
Sbjct: 292 SLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPN---LLLENALL 348

Query: 148 AGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDVV 203
             YAK G   EA+ + D M  +++VSW SM+S Y ++G+ + A   F  M    +  D +
Sbjct: 349 DMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSI 408

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPEQ-----NVVSWVTMLSGYARNGRMLEARRLFDQ 258
           ++  +L        LD    +F+ + EQ      +  +  M+  + R G + EA     Q
Sbjct: 409 AFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQ 468

Query: 259 MPIR-NVVAWNAMIAA 273
           MP+  N   W A+++A
Sbjct: 469 MPMEPNERVWGALLSA 484



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 9/150 (6%)

Query: 9   GNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKL 68
           GN    +  +N  +    K G +EEA  +F +M  ++ V++ SM+SAY ++G+  DA  L
Sbjct: 335 GNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVAL 394

Query: 69  FEQM----PQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYT 119
           F +M       + +++ S+++   H   + + R  F  M       P +  +A M+  + 
Sbjct: 395 FAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFG 454

Query: 120 RKGELEKARELFDLLPNKEDTACWNAMVAG 149
           R GE+E+A      +P + +   W A+++ 
Sbjct: 455 RAGEVEEAYSFIKQMPMEPNERVWGALLSA 484


>gi|334185633|ref|NP_189226.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546761|sp|Q9LU94.2|PP255_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g25970
 gi|332643575|gb|AEE77096.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 701

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 209/650 (32%), Positives = 334/650 (51%), Gaps = 63/650 (9%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----E 199
           N ++  Y K G    A  L D MP ++ VSWN+M+SGYT  G++  A   F  M+    +
Sbjct: 39  NRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFTCMKRSGSD 98

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRL 255
            D  S++ +L G   +   D   +    +     E NV    +++  YA+  R+ +A   
Sbjct: 99  VDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEA 158

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS--------WTTMIDG--Y 305
           F ++   N V+WNA+IA +VQ   I+ A  L   M  +  V+          T++D   +
Sbjct: 159 FKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTLLDDPMF 218

Query: 306 VRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG-THDVVCWNVMI 364
             + K   A+ L   + ++ I    AMIS Y     + +A ++FD +G + D++ WN MI
Sbjct: 219 CNLLKQVHAKVLKLGLQHE-ITICNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSMI 277

Query: 365 KGYAQCGRMDEAINLFRQM----VNKDIVTW----------------------------- 391
            G+++    + A  LF QM    V  DI T+                             
Sbjct: 278 AGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSACSGEEHQIFGKSLHGMVIKKGLE 337

Query: 392 ------NTMIAGYAQIRQ--MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
                 N +I+ Y Q     M+DA+ +FE + K ++ +SWN++I+GF Q     DA+K F
Sbjct: 338 QVTSATNALISMYIQFPTGTMEDALSLFESL-KSKDLISWNSIITGFAQKGLSEDAVKFF 396

Query: 444 VLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKC 503
             +     K D    +  L +C+ LA LQLG+QIH LA KSG+V++ FV +SLI MY+KC
Sbjct: 397 SYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKC 456

Query: 504 GRIQNAELLFKD-ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
           G I++A   F+  +     ++WN++I GYA +G    ++ LF +M  + V  D VTF  +
Sbjct: 457 GIIESARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAI 516

Query: 563 LSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKP 622
           L+ACSH GL+  GL+L   M  VY I+P +EHYA  +DLL RAG +++A E+++ M + P
Sbjct: 517 LTACSHTGLIQEGLELLNLMEPVYKIQPRMEHYAAAVDLLGRAGLVNKAKELIESMPLNP 576

Query: 623 NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRV 682
           +  +  T LG CR    I++       L E+EP+    Y  LS+M+++  +W+E   V+ 
Sbjct: 577 DPMVLKTFLGVCRACGEIEMATQVANHLLEIEPEDHFTYVSLSHMYSDLKKWEEKASVKK 636

Query: 683 SMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            M+  G +K PG SWIE++NQ+  F + D       +I   +K L  +++
Sbjct: 637 MMKERGVKKVPGWSWIEIRNQVKAFNAEDRSNPLCQDIYMMIKDLTQEMQ 686



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 137/589 (23%), Positives = 266/589 (45%), Gaps = 102/589 (17%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP--- 106
           N ++ +Y K G +  A  LF++MP+R+ VSWN+MI+GY    K+++A  LF  M R    
Sbjct: 39  NRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFTCMKRSGSD 98

Query: 107 -DLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL 162
            D +S++ ++         +   ++  L+     + +    +++V  YAK     +A + 
Sbjct: 99  VDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEA 158

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN--------LMLDGYVE 214
              +   N VSWN++++G+ +  ++  A      ME +  V+ +         +LD  + 
Sbjct: 159 FKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTLLDDPMF 218

Query: 215 LDDLDSAWKFFQKIPEQNVVSWV-TMLSGYARNGRMLEARRLFDQM-PIRNVVAWNAMIA 272
            + L        K+  Q+ ++    M+S YA  G + +A+R+FD +   +++++WN+MIA
Sbjct: 219 CNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIA 278

Query: 273 AYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI-- 326
            + +    E A  LFI+M     E +  ++T ++            + L   +  K +  
Sbjct: 279 GFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSACSGEEHQIFGKSLHGMVIKKGLEQ 338

Query: 327 --AAQTAMISGYVQ--NKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
             +A  A+IS Y+Q     M++A  +F+ + + D++ WN +I G+AQ G  ++A+  F  
Sbjct: 339 VTSATNALISMYIQFPTGTMEDALSLFESLKSKDLISWNSIITGFAQKGLSEDAVKFFSY 398

Query: 383 MVNKDI---------------------------------------VTWNTMIAGYAQIRQ 403
           + + +I                                          +++I  Y++   
Sbjct: 399 LRSSEIKVDDYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGI 458

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS 463
           ++ A K F+++  + +TV+WNA+I G+ Q+     +L +F  M  +  K DH T    L+
Sbjct: 459 IESARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILT 518

Query: 464 ACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
           AC+H   +Q G ++ +L               +  +Y    R+++       A  VD++ 
Sbjct: 519 ACSHTGLIQEGLELLNL---------------MEPVYKIQPRMEHY------AAAVDLLG 557

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV---TFIGVLSACSHV 569
              L+          +A +L E M +    PDP+   TF+GV  AC  +
Sbjct: 558 RAGLV---------NKAKELIESMPLN---PDPMVLKTFLGVCRACGEI 594



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 153/316 (48%), Gaps = 40/316 (12%)

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
           I ++   N ++ +Y++ G +  A  LF EMP+R+ VSW TMI GY    KL++A  L   
Sbjct: 32  ISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFTC 91

Query: 321 MPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKI--GTHD--VVCWNVMIKGYAQCGR 372
           M            + ++ G    KR D   Q+   +  G ++  V   + ++  YA+C R
Sbjct: 92  MKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCER 151

Query: 373 MDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
           +++A   F+++   + V+WN +IAG+ Q+R +               T  W   + G ++
Sbjct: 152 VEDAFEAFKEISEPNSVSWNALIAGFVQVRDI--------------KTAFW---LLGLME 194

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
                  +K  V M       D  T A  L+         L +Q+H   +K G  +++ +
Sbjct: 195 -------MKAAVTM-------DAGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQHEITI 240

Query: 493 GNSLITMYAKCGRIQNAELLFKD-ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
            N++I+ YA CG + +A+ +F       D+ISWNS+IAG++ +     A +LF +M    
Sbjct: 241 CNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGFSKHELKESAFELFIQMQRHW 300

Query: 552 VAPDPVTFIGVLSACS 567
           V  D  T+ G+LSACS
Sbjct: 301 VETDIYTYTGLLSACS 316



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 196/412 (47%), Gaps = 52/412 (12%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           N    +S++  YAK  RV DA + F+++ + N VSWN++IAG++    +K A  L   M 
Sbjct: 135 NVYVGSSLVDMYAKCERVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLME 194

Query: 104 ----FRPDLFSWALMIT-------CYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAK 152
                  D  ++A ++T       C   K   +   ++  L    E T C NAM++ YA 
Sbjct: 195 MKAAVTMDAGTFAPLLTLLDDPMFCNLLK---QVHAKVLKLGLQHEITIC-NAMISSYAD 250

Query: 153 IGNYNEAKKLLDAM-PSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNL 207
            G+ ++AK++ D +  SK+++SWNSM++G++K+     A + F  M+    E D+ ++  
Sbjct: 251 CGSVSDAKRVFDGLGGSKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTG 310

Query: 208 MLDGYV----ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR--NGRMLEARRLFDQMPI 261
           +L        ++          +K  EQ   +   ++S Y +   G M +A  LF+ +  
Sbjct: 311 LLSACSGEEHQIFGKSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSLFESLKS 370

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           +++++WN++I  + Q+G  E+A + F  +      S    +D Y   A L     L    
Sbjct: 371 KDLISWNSIITGFAQKGLSEDAVKFFSYLR-----SSEIKVDDYAFSALLRSCSDLATLQ 425

Query: 322 PYKNIAAQTAMISGYVQNKR--------------MDEANQIFDKIGT-HDVVCWNVMIKG 366
             + I A  A  SG+V N+               ++ A + F +I + H  V WN MI G
Sbjct: 426 LGQQIHA-LATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMILG 484

Query: 367 YAQCGRMDEAINLFRQMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEM 414
           YAQ G    +++LF QM N+++    VT+  ++   +    + + +++   M
Sbjct: 485 YAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQEGLELLNLM 536



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 18/172 (10%)

Query: 478 HHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNA 537
           H  AIK G ++D++V N ++  Y K G +  A +LF +    D +SWN++I+GY   G  
Sbjct: 23  HCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKL 82

Query: 538 TEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL--------FECMTEVYAIE 589
            +A  LF  M   G   D  +F  +L   + V   D G ++        +EC   VY   
Sbjct: 83  EDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYEC--NVYVGS 140

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIK 641
            LV+ YA       +  R+++AFE  K +  +PN+  W  L+      ++IK
Sbjct: 141 SLVDMYA-------KCERVEDAFEAFKEIS-EPNSVSWNALIAGFVQVRDIK 184



 Score = 69.3 bits (168), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 62/315 (19%), Positives = 140/315 (44%), Gaps = 42/315 (13%)

Query: 28  SGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGY 87
           +G +E+A+ +F  +  K+ +++NS+I+ +A+ G   DA K F  +    +   +   +  
Sbjct: 355 TGTMEDALSLFESLKSKDLISWNSIITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSAL 414

Query: 88  LHNDKVKEARELFDKM--------FRPDLFSWALMITCYTRKGELEKARELFDLLPNKED 139
           L +       +L  ++        F  + F  + +I  Y++ G +E AR+ F  + +K  
Sbjct: 415 LRSCSDLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHS 474

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASKFFE 195
           T  WNAM+ GYA+ G    +  L   M ++N+    V++ ++L+  +  G          
Sbjct: 475 TVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTG---------- 524

Query: 196 AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRL 255
                      L+ +G   L+ ++  +K   ++  ++  + V +L    R G + +A+ L
Sbjct: 525 -----------LIQEGLELLNLMEPVYKIQPRM--EHYAAAVDLL---GRAGLVNKAKEL 568

Query: 256 FDQMPIR-NVVAWNAMIAAYVQRGQIEEAARL---FIEMPERNPVSWTTMIDGYVRIAKL 311
            + MP+  + +     +      G+IE A ++    +E+   +  ++ ++   Y  + K 
Sbjct: 569 IESMPLNPDPMVLKTFLGVCRACGEIEMATQVANHLLEIEPEDHFTYVSLSHMYSDLKKW 628

Query: 312 DEARRLLDQMPYKNI 326
           +E   +   M  + +
Sbjct: 629 EEKASVKKMMKERGV 643


>gi|297819542|ref|XP_002877654.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323492|gb|EFH53913.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1112

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 213/692 (30%), Positives = 350/692 (50%), Gaps = 78/692 (11%)

Query: 112 ALMITC----YTRKGELEKAREL-FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           +L+ +C    + R G+L  AR + F++ P   D+  +N++++ Y+K G+  +AK + + M
Sbjct: 67  SLLKSCIRARHFRLGKLVHARLIEFEIEP---DSVLYNSLISLYSKSGDLTKAKDVFETM 123

Query: 167 P---SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL---DDLDS 220
                +++VSW++M++ +  NG    A K F    E  +V  +      +      D   
Sbjct: 124 GRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGLVPNDYCYTAVIRACSNSDFVG 183

Query: 221 AWK----FFQKIP--EQNVVSWVTMLSGYARNGRMLE-ARRLFDQMPIRNVVAWNAMIAA 273
             +    F  K    E +V    +++  + +     E A ++FD+M   NVV W  MI  
Sbjct: 184 VGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITR 243

Query: 274 YVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA-- 327
            +Q G   EA R F++M     E +  + +++      +  L   R+L        +A  
Sbjct: 244 CMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGRQLHSWAIRSGLADD 303

Query: 328 AQTAMISGYVQ---NKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ-CGRMDEAINLFRQM 383
            + +++  Y +   +  +D+  ++FD++  H V+ W  +I GY Q C    EAINLF +M
Sbjct: 304 VECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVMSWTALITGYMQNCNLATEAINLFSEM 363

Query: 384 VNKDIVTWNTM--------------------IAGYAQIR--------------------Q 403
           + +  V  N                      + G+A  R                    +
Sbjct: 364 ITQGHVEPNHFTFSSAFKACGNVSDPRVGKQVLGHAFKRGLASNSSVSNSVISMFVKCDR 423

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK---ADHSTLAC 460
           M+DA   FE + ++ N VS+N  + G  +N   LD    F L+++  ++       T A 
Sbjct: 424 MEDARTAFESLSEK-NLVSYNTFLDGTCRN---LDFEHAFELLSEIAERELGVSAFTFAS 479

Query: 461 ALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVD 520
            LS  A++ +L+ G QIH   +K G   +  V N+LI+MY+KCG I  A  +F   D  +
Sbjct: 480 LLSGVANVGSLRKGEQIHSQVLKLGLSCNQPVCNALISMYSKCGSIDTASRVFSLMDNRN 539

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE 580
           VISW S+I G+A +G A   ++ F +M  EGV P+ VT++ +LSACSHVGLV  G + F 
Sbjct: 540 VISWTSMITGFAKHGFAERVLETFNQMTKEGVKPNEVTYVAILSACSHVGLVSEGWRHFN 599

Query: 581 CMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNI 640
            M E + I+P +EHYACM+DLL RAG L +AFE +  M  + +  +W T LGACR+H N 
Sbjct: 600 SMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNT 659

Query: 641 KLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEV 700
           +LG++A  K+ E +P + + Y  LSN++A AG+W+E  ++R  M+     K+ GCSWIEV
Sbjct: 660 ELGKLAARKILEFDPNEPAAYIQLSNIYASAGKWEESTEMRRKMKERNLVKEGGCSWIEV 719

Query: 701 KNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            +++H F  GD       +I + L  L  +I+
Sbjct: 720 GDKVHKFYVGDTSHPNAHQIYDELDWLITEIK 751



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 128/590 (21%), Positives = 260/590 (44%), Gaps = 74/590 (12%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQM---PQRNLVSWNSMIAGYLHNDKVKEAREL 99
           + ++V YNS+IS Y+K+G +  A+ +FE M    +R++VSW++M+A + +N +  +A +L
Sbjct: 94  EPDSVLYNSLISLYSKSGDLTKAKDVFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKL 153

Query: 100 FDKMFR----PDLFSWALMITCYTRKGELEKARELFDLLPN----KEDTACWNAMVAGYA 151
           F +       P+ + +  +I   +    +   R +   L      + D     +++  + 
Sbjct: 154 FVEFLEMGLVPNDYCYTAVIRACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFV 213

Query: 152 KIGN-YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWN 206
           K  N +  A K+ D M   N+V+W  M++   + G    A +FF  M     E D  + +
Sbjct: 214 KGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLS 273

Query: 207 LMLDGYVELDDLD-----SAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
            +     EL++L       +W     + +    S V M +  + +G + + R++FD+M  
Sbjct: 274 SVFSACAELENLSLGRQLHSWAIRSGLADDVECSLVDMYAKCSADGSVDDCRKVFDRMQD 333

Query: 262 RNVVAWNAMIAAYVQRGQI-EEAARLFIEM-----PERNPVSWTTMIDG----------- 304
            +V++W A+I  Y+Q   +  EA  LF EM      E N  ++++               
Sbjct: 334 HSVMSWTALITGYMQNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGK 393

Query: 305 ------------------------YVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340
                                   +V+  ++++AR   + +  KN+ +    + G  +N 
Sbjct: 394 QVLGHAFKRGLASNSSVSNSVISMFVKCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNL 453

Query: 341 RMDEANQIFDKIGTHDV----VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIV----TWN 392
             + A ++  +I   ++      +  ++ G A  G + +   +  Q++   +       N
Sbjct: 454 DFEHAFELLSEIAERELGVSAFTFASLLSGVANVGSLRKGEQIHSQVLKLGLSCNQPVCN 513

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
            +I+ Y++   +D A ++F  M   RN +SW ++I+GF ++ F    L+ F  MT+EG K
Sbjct: 514 ALISMYSKCGSIDTASRVFSLM-DNRNVISWTSMITGFAKHGFAERVLETFNQMTKEGVK 572

Query: 453 ADHSTLACALSACAHLAALQLG-RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA-E 510
            +  T    LSAC+H+  +  G R  + +         +     ++ +  + G + +A E
Sbjct: 573 PNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFE 632

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
            +       DV+ W + +    ++ N TE  KL    ++E    +P  +I
Sbjct: 633 FINTMPFQADVLVWRTFLGACRVHSN-TELGKLAARKILEFDPNEPAAYI 681



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 148/327 (45%), Gaps = 31/327 (9%)

Query: 56  YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL----FSW 111
           + K  R+ DAR  FE + ++NLVS+N+ + G   N   + A EL  ++   +L    F++
Sbjct: 418 FVKCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEHAFELLSEIAERELGVSAFTF 477

Query: 112 ALMITCYTRKGELEKAREL----FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP 167
           A +++     G L K  ++      L  +     C NA+++ Y+K G+ + A ++   M 
Sbjct: 478 ASLLSGVANVGSLRKGEQIHSQVLKLGLSCNQPVC-NALISMYSKCGSIDTASRVFSLMD 536

Query: 168 SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWK 223
           ++N++SW SM++G+ K+G      + F  M +  V    V++  +L     +  +   W+
Sbjct: 537 NRNVISWTSMITGFAKHGFAERVLETFNQMTKEGVKPNEVTYVAILSACSHVGLVSEGWR 596

Query: 224 FFQKIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQR 277
            F  + E + +      +  M+    R G + +A    + MP + +V+ W   + A    
Sbjct: 597 HFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVH 656

Query: 278 GQIE---EAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA--- 331
              E    AAR  +E     P ++  + + Y    K +E+  +  +M  +N+  +     
Sbjct: 657 SNTELGKLAARKILEFDPNEPAAYIQLSNIYASAGKWEESTEMRRKMKERNLVKEGGCSW 716

Query: 332 ------MISGYVQNKRMDEANQIFDKI 352
                 +   YV +     A+QI+D++
Sbjct: 717 IEVGDKVHKFYVGDTSHPNAHQIYDEL 743



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 154/321 (47%), Gaps = 23/321 (7%)

Query: 350 DKIGTHDVVCWNVMIKG-----YAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQM 404
           D I   D V ++ ++K      + + G++  A  L    +  D V +N++I+ Y++   +
Sbjct: 55  DGIRPMDSVTFSSLLKSCIRARHFRLGKLVHA-RLIEFEIEPDSVLYNSLISLYSKSGDL 113

Query: 405 DDAVKIFEEMGK--RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
             A  +FE MG+  +R+ VSW+A+++ F  N    DA+K+FV   + G   +       +
Sbjct: 114 TKAKDVFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGLVPNDYCYTAVI 173

Query: 463 SACAHLAALQLGRQIHHLAIKSGYV-NDLFVGNSLITMYAKC-GRIQNAELLFKDADPVD 520
            AC++   + +GR I    +K+G+  +D+ VG SLI M+ K     +NA  +F     ++
Sbjct: 174 RACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELN 233

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE 580
           V++W  +I      G   EAI+ F +MV+ G   D  T   V SAC+ +  +  G +L  
Sbjct: 234 VVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGRQLHS 293

Query: 581 CMTEVYAIEP-LVEHYAC-MIDLLSRA---GRLDEAFEMVKGMKIKPNAGIWGTLLGACR 635
                +AI   L +   C ++D+ ++    G +D+  ++   M+   +   W  L+    
Sbjct: 294 -----WAIRSGLADDVECSLVDMYAKCSADGSVDDCRKVFDRMQ-DHSVMSWTALITG-- 345

Query: 636 MHQNIKLGRIAVEKLSELEPQ 656
             QN  L   A+   SE+  Q
Sbjct: 346 YMQNCNLATEAINLFSEMITQ 366



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 96/201 (47%), Gaps = 6/201 (2%)

Query: 439 ALKIFVLMTQEG-KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
           A+    LM ++G +  D  T +  L +C      +LG+ +H   I+     D  + NSLI
Sbjct: 45  AVSALDLMARDGIRPMDSVTFSSLLKSCIRARHFRLGKLVHARLIEFEIEPDSVLYNSLI 104

Query: 498 TMYAKCGRIQNAELLFKDADPV---DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP 554
           ++Y+K G +  A+ +F+        DV+SW++++A +  NG   +AIKLF E +  G+ P
Sbjct: 105 SLYSKSGDLTKAKDVFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGLVP 164

Query: 555 DPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRA-GRLDEAFE 613
           +   +  V+ ACS+   V  G  +   + +    E  V     +ID+  +     + A++
Sbjct: 165 NDYCYTAVIRACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYK 224

Query: 614 MVKGMKIKPNAGIWGTLLGAC 634
           +   M  + N   W  ++  C
Sbjct: 225 VFDKMS-ELNVVTWTLMITRC 244



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/250 (21%), Positives = 114/250 (45%), Gaps = 27/250 (10%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQK----NTVTYNSMISAYAKNGRVNDARK 67
           G   F     ++ +   G + +  +I SQ+ +     N    N++IS Y+K G ++ A +
Sbjct: 471 GVSAFTFASLLSGVANVGSLRKGEQIHSQVLKLGLSCNQPVCNALISMYSKCGSIDTASR 530

Query: 68  LFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGE 123
           +F  M  RN++SW SMI G+  +   +   E F++M     +P+  ++  +++  +  G 
Sbjct: 531 VFSLMDNRNVISWTSMITGFAKHGFAERVLETFNQMTKEGVKPNEVTYVAILSACSHVGL 590

Query: 124 LEKARELFDLL-------PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK-NIVSWN 175
           + +    F+ +       P  E  AC   MV    + G   +A + ++ MP + +++ W 
Sbjct: 591 VSEGWRHFNSMYEDHKIKPKMEHYAC---MVDLLCRAGLLTDAFEFINTMPFQADVLVWR 647

Query: 176 SMLSG--YTKNGEM-HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQN 232
           + L       N E+  LA++     +  +  ++  + + Y      + + +  +K+ E+N
Sbjct: 648 TFLGACRVHSNTELGKLAARKILEFDPNEPAAYIQLSNIYASAGKWEESTEMRRKMKERN 707

Query: 233 VV-----SWV 237
           +V     SW+
Sbjct: 708 LVKEGGCSWI 717


>gi|413943774|gb|AFW76423.1| hypothetical protein ZEAMMB73_944105 [Zea mays]
          Length = 446

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 162/387 (41%), Positives = 247/387 (63%), Gaps = 7/387 (1%)

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMG 415
           D+V  N ++  YA+CGR  EA  +F  M ++ +V+  +++AGYA+   ++DA  +F +M 
Sbjct: 45  DMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMV 104

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
           ++ N ++WN LI+ + QN    +A+++FV + ++     H T    L+AC ++A LQLG+
Sbjct: 105 EK-NVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQ 163

Query: 476 QIHHLAIKSGYV------NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
           Q H   +K G+       +D+FVGNSL+ MY K G I +   +F+     D +SWN++I 
Sbjct: 164 QAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIV 223

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE 589
           GYA NG A +A+ LFE M+     PD VT IGVLSAC H GLVD G + F  MTE + I 
Sbjct: 224 GYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGIT 283

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649
           P  +HY CM+DLL RAG L EA E++K M  +P++ +W +LLGACR+H+N++LG     +
Sbjct: 284 PSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGERTAGR 343

Query: 650 LSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLS 709
           L EL+P+ +  Y LLSNM+AE G+W +V +VR SM+  G  KQPGCSWIE+ ++++ FL+
Sbjct: 344 LFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQPGCSWIEIGSKMNVFLA 403

Query: 710 GDPKQCRTAEICNTLKTLAAQIRNTPL 736
            D +     EI +TL+ +  ++  T +
Sbjct: 404 RDNRHPCRNEIHSTLRIIQMEMCRTSI 430



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 160/348 (45%), Gaps = 27/348 (7%)

Query: 221 AWKFFQKIPEQNVVSWVTMLSGYA--RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
           A  FF    E  + S ++  +G A  R GR + A  +       ++V  NA++  Y + G
Sbjct: 3   ATGFFPD--EVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCG 60

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
           +  EA  +F  MP R+ VS T+++ GY + A +++A+ +  QM  KN+ A   +I+ Y Q
Sbjct: 61  RTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQ 120

Query: 339 NKRMDEANQIFDKIGTHDV------------VCWNVMIKGYAQCGRMDEAINLFRQMVN- 385
           N   +EA ++F ++    +             C N+ +    Q   +      FR     
Sbjct: 121 NGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGP 180

Query: 386 -KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
             D+   N+++  Y +   +DD  K+FE M  R N VSWNA+I G+ QN    DAL +F 
Sbjct: 181 ESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDN-VSWNAMIVGYAQNGRAKDALHLFE 239

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQ-IHHLAIKSGYVNDLFVGNSLITMYAKC 503
            M    +  D  T+   LSAC H   +  GR+  H +    G          ++ +  + 
Sbjct: 240 RMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRA 299

Query: 504 GRIQNAELLFKD--ADPVDVISWNSLIAGYAINGNAT----EAIKLFE 545
           G ++ AE L KD   +P D + W SL+    ++ N       A +LFE
Sbjct: 300 GHLKEAEELIKDMPTEP-DSVLWASLLGACRLHKNVELGERTAGRLFE 346



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 150/311 (48%), Gaps = 32/311 (10%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           + GR   A  +     + + V  N+++  YAK GR  +AR +F+ MP R++VS  S++AG
Sbjct: 27  REGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAG 86

Query: 87  YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDT------ 140
           Y  +  V++A+ +F +M   ++ +W ++I  Y + GE E+A  LF  L  K D+      
Sbjct: 87  YAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQL--KRDSIWPTHY 144

Query: 141 -------ACWNAMVAGYAKIGNYNEAKK--LLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
                  AC N  V    +  + +  K+    D  P  ++   NS++  Y K G +   +
Sbjct: 145 TYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGA 204

Query: 192 KFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQN----VVSWVTMLSGYARNG 247
           K FE M  RD VSWN M+ GY +      A   F+++   N     V+ + +LS    +G
Sbjct: 205 KVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSG 264

Query: 248 RMLEARRLFDQM-------PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWT 299
            + E RR F  M       P R+   +  M+    + G ++EA  L  +MP E + V W 
Sbjct: 265 LVDEGRRHFHFMTEDHGITPSRD--HYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWA 322

Query: 300 TMIDGYVRIAK 310
           +++ G  R+ K
Sbjct: 323 SLL-GACRLHK 332



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 156/339 (46%), Gaps = 30/339 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +    K GR  EA  IF  M  ++ V+  S+++ YAK+  V DA+ +F QM ++N++
Sbjct: 50  NALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVI 109

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAREL---- 130
           +WN +IA Y  N + +EA  LF ++ R    P  +++  ++        L+  ++     
Sbjct: 110 AWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHV 169

Query: 131 ------FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
                 FD  P + D    N++V  Y K G+ ++  K+ + M +++ VSWN+M+ GY +N
Sbjct: 170 LKEGFRFDFGP-ESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQN 228

Query: 185 GEMHLASKFFEAM----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS----- 235
           G    A   FE M    E  D V+   +L        +D   + F  + E + ++     
Sbjct: 229 GRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDH 288

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE----EAARLFIEM 290
           +  M+    R G + EA  L   MP   + V W +++ A      +E     A RLF E+
Sbjct: 289 YTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGERTAGRLF-EL 347

Query: 291 PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
              N   +  + + Y  + K  +  R+   M  + ++ Q
Sbjct: 348 DPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQ 386



 Score =  113 bits (282), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 124/232 (53%), Gaps = 18/232 (7%)

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
           D+V  N ++D Y +      A   F  +P ++VVS  ++L+GYA++  + +A+ +F QM 
Sbjct: 45  DMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMV 104

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWT--TMIDGYVRIAKLDEARR 316
            +NV+AWN +IAAY Q G+ EEA RLF+++   +  P  +T   +++    IA L   ++
Sbjct: 105 EKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQ 164

Query: 317 L----------LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG 366
                       D  P  ++    +++  Y++   +D+  ++F+++   D V WN MI G
Sbjct: 165 AHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVG 224

Query: 367 YAQCGRMDEAINLFRQMV----NKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           YAQ GR  +A++LF +M+    N D VT   +++       +D+  + F  M
Sbjct: 225 YAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFM 276



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 143/306 (46%), Gaps = 29/306 (9%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRN-----LVSWNSMIAGYLHNDKVKEAREL 99
           + VT +S++SA A      + R++   M +R+     +V  N+++  Y    +  EAR +
Sbjct: 9   DEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCI 68

Query: 100 FDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA 159
           FD M    + S   ++  Y +   +E A+ +F  +  K   A WN ++A YA+ G   EA
Sbjct: 69  FDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIA-WNVLIAAYAQNGEEEEA 127

Query: 160 KKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASKF----------FEAMEERDVVSW 205
            +L   +   +I     ++ ++L+       + L  +           F+   E DV   
Sbjct: 128 IRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVG 187

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRN-- 263
           N ++D Y++   +D   K F+++  ++ VSW  M+ GYA+NGR  +A  LF++M   N  
Sbjct: 188 NSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNEN 247

Query: 264 --VVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVRIAKLDEARR 316
              V    +++A    G ++E  R F  M E + ++     +T M+D   R   L EA  
Sbjct: 248 PDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEE 307

Query: 317 LLDQMP 322
           L+  MP
Sbjct: 308 LIKDMP 313



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 106/223 (47%), Gaps = 38/223 (17%)

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIH-HLAIKSGYVNDLFVGNSLITMYAKCG 504
           M   G   D  TL+  +SACA LAA + GRQ+H H+  +    +D+ + N+L+ MYAKCG
Sbjct: 1   MMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCG 60

Query: 505 R-------------------------------IQNAELLFKDADPVDVISWNSLIAGYAI 533
           R                               +++A+++F      +VI+WN LIA YA 
Sbjct: 61  RTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQ 120

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLK-----LFECMTEVYAI 588
           NG   EAI+LF ++  + + P   T+  VL+AC ++ ++  G +     L E     +  
Sbjct: 121 NGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGP 180

Query: 589 EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           E  V     ++D+  + G +D+  ++ + M  + N   W  ++
Sbjct: 181 ESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVS-WNAMI 222



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 9/145 (6%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S VF  N  +    K+G +++  K+F +M+ ++ V++N+MI  YA+NGR  DA  LFE+M
Sbjct: 182 SDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERM 241

Query: 73  PQRNLVSWNSMIAGYL----HNDKVKEARELF-----DKMFRPDLFSWALMITCYTRKGE 123
              N    +  + G L    H+  V E R  F     D    P    +  M+    R G 
Sbjct: 242 LCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGH 301

Query: 124 LEKARELFDLLPNKEDTACWNAMVA 148
           L++A EL   +P + D+  W +++ 
Sbjct: 302 LKEAEELIKDMPTEPDSVLWASLLG 326


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 189/558 (33%), Positives = 290/558 (51%), Gaps = 51/558 (9%)

Query: 217 DLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIA 272
           DL  A   F+ I   N V W  M+ G + +     A   +  M       N   + ++  
Sbjct: 77  DLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFK 136

Query: 273 AYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA 328
           +  +     E  ++   +     E N    T++I+ Y +  +L  AR + D+   ++  +
Sbjct: 137 SCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVS 196

Query: 329 QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----V 384
            TA+I+GY     +DEA ++FD+I   DVV WN MI GYAQ GR++EA+  F +M    V
Sbjct: 197 FTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKV 256

Query: 385 NKDIVT-----------------------W-------------NTMIAGYAQIRQMDDAV 408
             ++ T                       W             N +I  Y +   +++A 
Sbjct: 257 TPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEAS 316

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
            +FE++ + +N VSWN +I G+     + +AL +F  M Q     +  T    L ACA+L
Sbjct: 317 NLFEKI-QDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANL 375

Query: 469 AALQLGRQIHHLAIKS--GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNS 526
            AL LG+ +H    K+     N + +  SLI MYAKCG +  A+ +F   +   + +WN+
Sbjct: 376 GALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNA 435

Query: 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVY 586
           +I+G+A++G+   A+ LF  M  EG  PD +TF+GVL+AC H GL+  G + F  M + Y
Sbjct: 436 MISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDY 495

Query: 587 AIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIA 646
            + P + HY CMIDL  RAG  DEA  +VK M++KP+  IW +LLGACR+H+ I+L    
Sbjct: 496 KVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESV 555

Query: 647 VEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHT 706
            + L ELEP+  S Y LLSN++A AGRW++V K+R  +  +  +K PGCS IEV + +H 
Sbjct: 556 AKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHE 615

Query: 707 FLSGDPKQCRTAEICNTL 724
           FL GD    ++ EI   L
Sbjct: 616 FLVGDKVHPQSNEIYKML 633



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 102/423 (24%), Positives = 192/423 (45%), Gaps = 51/423 (12%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F     I    ++G +  A  +F + S ++ V++ ++I+ YA  G +++AR+LF+++P R
Sbjct: 164 FVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVR 223

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFS-WALMITCYTRKGELEKAREL 130
           ++VSWN+MI+GY  + +V+EA   F++M R    P++ +  +++  C      L+    +
Sbjct: 224 DVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWV 283

Query: 131 FDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
              + ++    +    N ++  Y K G+  EA  L + +  KN+VSWN M+ GYT     
Sbjct: 284 RSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCY 343

Query: 188 HLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-------W 236
             A   F  M + ++    V++  +L     L  LD   K+     ++N+ S       W
Sbjct: 344 KEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLG-KWVHAYVDKNMKSMKNTVALW 402

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
            +++  YA+ G +  A+R+FD M  +++  WNAMI+ +   G  + A  LF  M     V
Sbjct: 403 TSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFV 462

Query: 297 SWTTMIDGYVRIAK----LDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI 352
                  G +   K    L   RR             ++MI  Y  + ++          
Sbjct: 463 PDDITFVGVLTACKHAGLLSLGRRYF-----------SSMIQDYKVSPKLPH-------- 503

Query: 353 GTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAGYAQIRQMDDAVKIF 411
                  +  MI  + + G  DEA  L + M +  D   W +++      R+++ A  + 
Sbjct: 504 -------YGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVA 556

Query: 412 EEM 414
           + +
Sbjct: 557 KHL 559



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 115/471 (24%), Positives = 198/471 (42%), Gaps = 99/471 (21%)

Query: 55  AYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG-------------YLH--NDKVKEAREL 99
           A + +G ++ A  LF+ +   N V WN MI G             Y+H  +   +     
Sbjct: 71  AVSPHGDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYT 130

Query: 100 FDKMFRP------------------------DLFSWALMITCYTRKGELEKARELFDLLP 135
           F  +F+                         + F    +I  Y + GEL  AR +FD   
Sbjct: 131 FPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFD-KS 189

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
           +  D   + A++ GYA  G  +EA++L D +P +++VSWN+M+SGY ++G +  A  FFE
Sbjct: 190 SMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFE 249

Query: 196 AMEERDVV---------------------------SW-------------NLMLDGYVEL 215
            M    V                            SW             N ++D YV+ 
Sbjct: 250 EMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKC 309

Query: 216 DDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMI 271
            DL+ A   F+KI ++NVVSW  M+ GY       EA  LF +M   N+    V + +++
Sbjct: 310 GDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSIL 369

Query: 272 AAYVQRGQIEEAARLFIEMPE-----RNPVS-WTTMIDGYVRIAKLDEARRLLDQMPYKN 325
            A    G ++    +   + +     +N V+ WT++ID Y +   L  A+R+ D M  K+
Sbjct: 370 PACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKS 429

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-- 383
           +A   AMISG+  +   D A  +F ++ +   V  ++   G     +    ++L R+   
Sbjct: 430 LATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFS 489

Query: 384 -------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
                  V+  +  +  MI  + +    D+A  + + M  + +   W +L+
Sbjct: 490 SMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLL 540



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 152/365 (41%), Gaps = 62/365 (16%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQ------------------------------- 43
           V + N  I+   +SGRVEEA+  F +M +                               
Sbjct: 225 VVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVR 284

Query: 44  ---------KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVK 94
                     N    N +I  Y K G + +A  LFE++  +N+VSWN MI GY H    K
Sbjct: 285 SWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYK 344

Query: 95  EARELFDKMFR----PDLFSWALMITCYTRKGELEKARELF-----DLLPNKEDTACWNA 145
           EA  LF +M +    P+  ++  ++      G L+  + +      ++   K   A W +
Sbjct: 345 EALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTS 404

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW 205
           ++  YAK G+   AK++ D M +K++ +WN+M+SG+  +G    A   F  M     V  
Sbjct: 405 LIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPD 464

Query: 206 NLMLDGYV----ELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEARRLF 256
           ++   G +        L    ++F  + +   VS     +  M+  + R G   EA  L 
Sbjct: 465 DITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLV 524

Query: 257 DQMPIR-NVVAWNAMIAAYVQRGQIEEA---ARLFIEMPERNPVSWTTMIDGYVRIAKLD 312
             M ++ +   W +++ A     +IE A   A+   E+   NP ++  + + Y    + +
Sbjct: 525 KNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAGRWE 584

Query: 313 EARRL 317
           +  ++
Sbjct: 585 DVAKI 589



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 139/304 (45%), Gaps = 36/304 (11%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS +   N  I    K G +EEA  +F ++  KN V++N MI  Y       +A  LF +
Sbjct: 293 GSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRR 352

Query: 72  MPQRNL----VSWNSMIA-----GYLHNDKVKEARELFDKMFRP---DLFSWALMITCYT 119
           M Q N+    V++ S++      G L  D  K      DK  +     +  W  +I  Y 
Sbjct: 353 MMQSNIDPNDVTFLSILPACANLGAL--DLGKWVHAYVDKNMKSMKNTVALWTSLIDMYA 410

Query: 120 RKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV----SWN 175
           + G+L  A+ +FD + N +  A WNAM++G+A  G+ + A  L   M S+  V    ++ 
Sbjct: 411 KCGDLAVAKRIFDCM-NTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFV 469

Query: 176 SMLSGYTKNGEMHLASKFFEAMEERDVVS-----WNLMLDGYVE---LDDLDSAWKFFQK 227
            +L+     G + L  ++F +M +   VS     +  M+D +      D+ ++  K  + 
Sbjct: 470 GVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEM 529

Query: 228 IPEQNVVSWVTMLSGYARNGRMLE-----ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEE 282
            P+  +  W ++L G  R  R +E     A+ LF+  P  N  A+  +   Y   G+ E+
Sbjct: 530 KPDGAI--WCSLL-GACRIHRRIELAESVAKHLFELEP-ENPSAYVLLSNIYAGAGRWED 585

Query: 283 AARL 286
            A++
Sbjct: 586 VAKI 589



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 6/118 (5%)

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYA--KCGRIQNAEL 511
           DH +L   LS C     LQ  +QIH   IK+G  N  F  + LI   A    G +  A  
Sbjct: 28  DHPSLTL-LSNCK---TLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALS 83

Query: 512 LFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
           LFK     + + WN +I G + + +   A++ +  M+  G  P+  TF  +  +C+ +
Sbjct: 84  LFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKI 141


>gi|357484133|ref|XP_003612353.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513688|gb|AES95311.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 210/740 (28%), Positives = 378/740 (51%), Gaps = 75/740 (10%)

Query: 25  LGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMI 84
           L +  ++   + I   +SQ  T   N+++S Y+K+   + A KLF++MP RN+V+W ++I
Sbjct: 64  LTQCNQIHAQLIITQYISQ--THLANTLLSFYSKSSNFHYAHKLFDKMPNRNVVTWTTLI 121

Query: 85  AGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDLLPN---K 137
           + +L    V +A E+F+ M     RP+  ++A+++   T +       ++  LL     +
Sbjct: 122 SSHLKYGSVSKAFEMFNHMRVSDERPNENTFAVLLRACTNRELWSVGLQIHGLLVRCGLE 181

Query: 138 EDTACWNAMVAGYAKIGN-YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEA 196
            +    +++V  Y K G+   +A ++   +  +++V+WN M+SG+ +NG+  +  + F  
Sbjct: 182 REKFAGSSLVYMYLKGGDDLRDALRVFYGLLERDVVAWNVMISGFAQNGDFRMVQRLFSE 241

Query: 197 MEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKI-PEQNVVSWVTMLSGYARNGRML 250
           M E      D +++  +L     L+++        K   E +VV    M+  YA+   + 
Sbjct: 242 MWEEQGLKPDRITFASLLKCCSVLNEVMQIHGIVYKFGAEVDVVVESAMVDLYAKCRDVS 301

Query: 251 EARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYV 306
             R++FD M  ++   W++MI+ Y    + EEA   F +M  +    +    ++ +   V
Sbjct: 302 SCRKIFDSMEKKDNFVWSSMISGYTMNNRGEEAVNFFKDMCRQRVKLDQHVLSSTLKACV 361

Query: 307 RIAKLD---EARRLLDQMPYKN-IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNV 362
            I  L+   +   L+ +  ++N     + +++ Y     + +  ++F +I   D+V WN 
Sbjct: 362 EIEDLNTGVQVHGLMIKNGHQNDCFVASVLLNLYASFGELGDVEKLFSRIDDKDIVAWNS 421

Query: 363 MIKGYAQ----CGRMDEAINLFRQM----------------------------------- 383
           MI   A+    CGR    + LF+++                                   
Sbjct: 422 MILAQARPGQGCGR---CMQLFQELRRTTFLQIQGATLVAVLKSCEKDSDLPAGRQIHSL 478

Query: 384 -----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
                + +  +  N ++  Y++ +Q+DDA K F ++  R++  SW+++I    QN     
Sbjct: 479 IVKSSLCRHTLVGNALVHMYSECKQIDDAFKAFVDI-VRKDDSSWSSIIGTCKQNRMESK 537

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
           AL++   M  EG      +L   +SAC+ L  +  G+Q+H  AIKSGY  D+++G+S+I 
Sbjct: 538 ALELCKEMLDEGINFTSYSLPLCISACSQLLTISEGKQLHVFAIKSGYSCDVYIGSSIID 597

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           MYAKCG I+ +E +F +    + +++N++I+GYA +G A +AI++  ++   GVAP+ VT
Sbjct: 598 MYAKCGNIEESEKVFDEQLKPNEVTFNAIISGYAHHGKAQQAIEVLSKLEKNGVAPNHVT 657

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
           F+ ++SACSH G V+    LF  M + Y I+P  EHY+C++D   RAGRL+EA+++V+  
Sbjct: 658 FLALMSACSHAGYVEETSHLFTLMLDKYKIKPKSEHYSCLVDAYGRAGRLEEAYQIVQK- 716

Query: 619 KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVE 678
               +   W TLL ACR H N K+G  +  K+ EL P   + Y LLSN++ E G W+E  
Sbjct: 717 --DGSESAWRTLLSACRNHSNRKIGEKSAMKMIELNPSDHAPYILLSNIYIEEGNWEEAL 774

Query: 679 KVRVSMEGSGAQKQPGCSWI 698
             R  M     +K PG SW+
Sbjct: 775 NCRKKMAKIRVKKDPGNSWL 794


>gi|14587213|dbj|BAB61147.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|125570436|gb|EAZ11951.1| hypothetical protein OsJ_01824 [Oryza sativa Japonica Group]
          Length = 735

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 202/634 (31%), Positives = 323/634 (50%), Gaps = 60/634 (9%)

Query: 159 AKKLLDAMP--SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS-------WNLML 209
           A  + D +P  ++++ SWNS+L+  + +  +   S+F   +    V+             
Sbjct: 68  AFAVFDDIPPAARDVTSWNSLLNPLSGHRPLDALSRFRSMLSSSTVLPSPHSFAAAFTAA 127

Query: 210 DGYVELDDLDSAWKFFQKIPE--QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
                     +A     KIP    NV    ++L+ Y + G + +ARR+FD MP RN  +W
Sbjct: 128 ARAASAPAGTAAHALACKIPSAVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSW 187

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI- 326
           + M+A Y      EEA  LF  M E  P   +  +   V  A       L+ +  +  I 
Sbjct: 188 STMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIV 247

Query: 327 --------AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
                   + + ++++ Y +   M  A  +F+     + + W+ MI GYAQ G  D A++
Sbjct: 248 KDGLLDFVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVS 307

Query: 379 LFRQM--------------------------VNKD-------------IVTWNTMIAGYA 399
           +F QM                          V K              I   + ++  YA
Sbjct: 308 MFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYA 367

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
           +   + DA + F+++    + V W A++SG +QN  H +AL ++  M +EG     ST+A
Sbjct: 368 KCGCIADAKEGFDQL-YEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIA 426

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
             L ACA +AAL+ G+Q+H   +K G      VG++L TMY+KCG +++   +F+     
Sbjct: 427 SGLRACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDR 486

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579
           DVI+WNS+I+G++ NG    A+ LFEEM MEG  PD +TFI +L ACSH+GLVD G + F
Sbjct: 487 DVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYF 546

Query: 580 ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639
             MT+ Y + P ++HYACM+D+LSRAG L EA + ++ + I     +W  +LGACR  ++
Sbjct: 547 SLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRD 606

Query: 640 IKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIE 699
             +G  A E+L EL    +S Y LLSN++A   +W++VE+VR  M   G  K PGCSW+E
Sbjct: 607 FDVGAYAGERLMELGTGDSSAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVE 666

Query: 700 VKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           + +++H F+ G+ +      I   L+ LA  +++
Sbjct: 667 LNSRVHVFVVGEQQHPEAENINAQLRRLAKHMKD 700



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 107/412 (25%), Positives = 195/412 (47%), Gaps = 32/412 (7%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKV 93
           A KI S +S  N     S+++ Y K G V+DAR++F+ MPQRN  SW++M+AGY      
Sbjct: 143 ACKIPSAVS--NVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCS 200

Query: 94  KEARELFDKMF------RPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWN 144
           +EA +LF  M       + +  + A++       G L    ++  L+      +  +  N
Sbjct: 201 EEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLG-LLMGEQMHGLIVKDGLLDFVSVEN 259

Query: 145 AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS 204
           ++V  YAK G    A  + ++   +N ++W++M++GY +NGE   A   F  M       
Sbjct: 260 SLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTP 319

Query: 205 WNLMLDGYVEL-DDLDS------AWKFFQKIP-EQNVVSWVTMLSGYARNGRMLEARRLF 256
                 G +    DL +      A     K+  E  +     ++  YA+ G + +A+  F
Sbjct: 320 TEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGF 379

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVR----IAKLD 312
           DQ+   ++V W AM++ +VQ G+ EEA  L+  M +   +   + I   +R    IA L+
Sbjct: 380 DQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALE 439

Query: 313 EARRLLDQMPYKNIA----AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
             ++L  Q+    +       +A+ + Y +   +++   +F +I   DV+ WN +I G++
Sbjct: 440 PGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFS 499

Query: 369 QCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
           Q G  + A++LF +M       D +T+  ++   + +  +D   + F  M K
Sbjct: 500 QNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTK 551



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 152/339 (44%), Gaps = 38/339 (11%)

Query: 14  YVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP 73
           +V  +N  +T   K+G +  A  +F    ++N++T+++MI+ YA+NG  + A  +F QM 
Sbjct: 254 FVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMH 313

Query: 74  QRNLVSWNSMIAGYLHNDK-------VKEARELFDKM-FRPDLFSWALMITCYTRKGELE 125
                       G L+           K+A  L  K+ F   ++  + ++  Y + G + 
Sbjct: 314 AAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIA 373

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
            A+E FD L  + D   W AMV+G+ + G + EA  L   M  + I+   S ++   +  
Sbjct: 374 DAKEGFDQL-YEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLR-- 430

Query: 186 EMHLASKFFEAME-----ERDVVSWNLMLDG---------YVELDDLDSAWKFFQKIPEQ 231
               A     A+E        +V + L L           Y +  +L+     F++IP++
Sbjct: 431 ----ACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDR 486

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNA----MIAAYVQRGQIEEAARLF 287
           +V++W +++SG+++NG    A  LF++M +   +  N     ++ A    G ++     F
Sbjct: 487 DVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYF 546

Query: 288 IEMPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQM 321
             M +   ++     +  M+D   R   L EA+  ++ +
Sbjct: 547 SLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESI 585



 Score = 42.7 bits (99), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 8/92 (8%)

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR--IQNAELLFKDADPV--DVISWNSLIA 529
           G  +H  A+KSG  +   V NSLI  Y+   R  +  A  +F D  P   DV SWNSL+ 
Sbjct: 31  GEALHAWALKSGAASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVTSWNSLLN 90

Query: 530 GYAINGN-ATEAIKLFEEMVMEG-VAPDPVTF 559
              ++G+   +A+  F  M+    V P P +F
Sbjct: 91  --PLSGHRPLDALSRFRSMLSSSTVLPSPHSF 120


>gi|356532311|ref|XP_003534717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 755

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 195/646 (30%), Positives = 325/646 (50%), Gaps = 63/646 (9%)

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           D    ++++  YAK G  + A+K+ D MP +N+V W +++  Y++ G +  A   F+ M 
Sbjct: 95  DAYIASSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAFSLFDEMR 154

Query: 199 ERDV----VSWNLMLDGYVELDDLDSA------WKFFQKIPEQNVVSWVTMLSGYARNGR 248
            + +    V+   +L G  EL  +         + F   I   N     +ML+ Y + G 
Sbjct: 155 RQGIQPSSVTVLSLLFGVSELAHVQCLHGCAILYGFMSDINLSN-----SMLNVYGKCGN 209

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDG 304
           +  +R+LFD M  R++V+WN++I+AY Q G I E   L   M     E  P ++ +++  
Sbjct: 210 IEYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQTFGSVLSV 269

Query: 305 YVRIAKLDEARRLLDQMP----YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCW 360
                +L   R L  Q+     Y +   +T++I  Y++  ++D A ++F++    DVV W
Sbjct: 270 AASRGELKLGRCLHGQILRAGFYLDAHVETSLIVVYLKGGKIDIAFRMFERSSDKDVVLW 329

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVN----------------------------------- 385
             MI G  Q G  D+A+ +FRQM+                                    
Sbjct: 330 TAMISGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITACAQLGSYNLGTSILGYILR 389

Query: 386 ----KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALK 441
                D+ T N+++  YA+   +D +  +F+ M  RR+ VSWNA+++G+ QN +  +AL 
Sbjct: 390 QELPLDVATQNSLVTMYAKCGHLDQSSIVFDMM-NRRDLVSWNAMVTGYAQNGYVCEALF 448

Query: 442 IFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYA 501
           +F  M  + +  D  T+   L  CA    L LG+ IH   I++G    + V  SL+ MY 
Sbjct: 449 LFNEMRSDNQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYC 508

Query: 502 KCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIG 561
           KCG +  A+  F      D++SW+++I GY  +G    A++ + + +  G+ P+ V F+ 
Sbjct: 509 KCGDLDTAQRCFNQMPSHDLVSWSAIIVGYGYHGKGEAALRFYSKFLESGMKPNHVIFLS 568

Query: 562 VLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIK 621
           VLS+CSH GLV+ GL ++E MT+ + I P +EH+AC++DLLSRAGR++EA+ + K     
Sbjct: 569 VLSSCSHNGLVEQGLNIYESMTKDFGIAPDLEHHACVVDLLSRAGRVEEAYNVYKKKFPD 628

Query: 622 PNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVR 681
           P   + G +L ACR + N +LG      +  L P     +  L++ +A   +W+EV +  
Sbjct: 629 PVLDVLGIILDACRANGNNELGDTIANDILMLRPMDAGNFVQLAHCYASINKWEEVGEAW 688

Query: 682 VSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
             M   G +K PG S+I++   I TF +      +  EI  TLK L
Sbjct: 689 TYMRSLGLKKIPGWSFIDIHGTITTFFTDHNSHPQFQEIVCTLKIL 734



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 137/543 (25%), Positives = 248/543 (45%), Gaps = 78/543 (14%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM------ 103
           +S+I+ YAK G  + ARK+F+ MP+RN+V W ++I  Y    +V EA  LFD+M      
Sbjct: 100 SSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAFSLFDEMRRQGIQ 159

Query: 104 ------------------------------FRPDLFSWALMITCYTRKGELEKARELFDL 133
                                         F  D+     M+  Y + G +E +R+LFD 
Sbjct: 160 PSSVTVLSLLFGVSELAHVQCLHGCAILYGFMSDINLSNSMLNVYGKCGNIEYSRKLFDY 219

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHL 189
           + ++ D   WN++++ YA+IGN  E   LL  M  +       ++ S+LS     GE+ L
Sbjct: 220 MDHR-DLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQTFGSVLSVAASRGELKL 278

Query: 190 ASKFFEAMEERDVVSWNLMLDGYVELD---------DLDSAWKFFQKIPEQNVVSWVTML 240
                       ++     LD +VE            +D A++ F++  +++VV W  M+
Sbjct: 279 GRCL-----HGQILRAGFYLDAHVETSLIVVYLKGGKIDIAFRMFERSSDKDVVLWTAMI 333

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV----QRGQIEEAARLF-----IEMP 291
           SG  +NG   +A  +F QM    V    A +A+ +    Q G       +       E+P
Sbjct: 334 SGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITACAQLGSYNLGTSILGYILRQELP 393

Query: 292 ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK 351
             +  +  +++  Y +   LD++  + D M  +++ +  AM++GY QN  + EA  +F++
Sbjct: 394 -LDVATQNSLVTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFNE 452

Query: 352 I----GTHDVVCWNVMIKGYAQCGRMDEA--INLF--RQMVNKDIVTWNTMIAGYAQIRQ 403
           +     T D +    +++G A  G++     I+ F  R  +   I+   +++  Y +   
Sbjct: 453 MRSDNQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGD 512

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS 463
           +D A + F +M    + VSW+A+I G+  +     AL+ +    + G K +H      LS
Sbjct: 513 LDTAQRCFNQM-PSHDLVSWSAIIVGYGYHGKGEAALRFYSKFLESGMKPNHVIFLSVLS 571

Query: 464 ACAHLAALQLGRQIHHLAIKS-GYVNDLFVGNSLITMYAKCGRIQNAELLFKD--ADPV- 519
           +C+H   ++ G  I+    K  G   DL     ++ + ++ GR++ A  ++K    DPV 
Sbjct: 572 SCSHNGLVEQGLNIYESMTKDFGIAPDLEHHACVVDLLSRAGRVEEAYNVYKKKFPDPVL 631

Query: 520 DVI 522
           DV+
Sbjct: 632 DVL 634



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 102/428 (23%), Positives = 192/428 (44%), Gaps = 65/428 (15%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKL--------FE 70
           N  +   GK G +E + K+F  M  ++ V++NS+ISAYA+ G + +   L        FE
Sbjct: 198 NSMLNVYGKCGNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFE 257

Query: 71  QMPQR--NLVSW-----------------------------NSMIAGYLHNDKVKEAREL 99
             PQ   +++S                               S+I  YL   K+  A  +
Sbjct: 258 AGPQTFGSVLSVAASRGELKLGRCLHGQILRAGFYLDAHVETSLIVVYLKGGKIDIAFRM 317

Query: 100 FDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNY 156
           F++    D+  W  MI+   + G  +KA  +F  +     K  TA   +++   A++G+Y
Sbjct: 318 FERSSDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITACAQLGSY 377

Query: 157 NEAKKLLDAMPSK----NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY 212
           N    +L  +  +    ++ + NS+++ Y K G +  +S  F+ M  RD+VSWN M+ GY
Sbjct: 378 NLGTSILGYILRQELPLDVATQNSLVTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMVTGY 437

Query: 213 VELDDLDSAWKFFQKIPEQN----VVSWVTMLSGYARNGRMLEARRLFDQMPIRN----- 263
            +   +  A   F ++   N     ++ V++L G A  G+ L   +      IRN     
Sbjct: 438 AQNGYVCEALFLFNEMRSDNQTPDSITIVSLLQGCASTGQ-LHLGKWIHSFVIRNGLRPC 496

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR----LLD 319
           ++   +++  Y + G ++ A R F +MP  + VSW+ +I GY    K + A R     L+
Sbjct: 497 ILVDTSLVDMYCKCGDLDTAQRCFNQMPSHDLVSWSAIIVGYGYHGKGEAALRFYSKFLE 556

Query: 320 QMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG-----THDVVCWNVMIKGYAQCGRMD 374
                N     +++S    N  +++   I++ +        D+     ++   ++ GR++
Sbjct: 557 SGMKPNHVIFLSVLSSCSHNGLVEQGLNIYESMTKDFGIAPDLEHHACVVDLLSRAGRVE 616

Query: 375 EAINLFRQ 382
           EA N++++
Sbjct: 617 EAYNVYKK 624



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 107/256 (41%), Gaps = 30/256 (11%)

Query: 419 NTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIH 478
            T S NA I+       H   L  +  M +    +D  T    L AC+ L    LG  +H
Sbjct: 25  TTNSVNATINHHSTQGAHHQVLATYASMLKTHVPSDAYTFPSLLKACSFLNLFSLGLTLH 84

Query: 479 HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNAT 538
              + SG   D ++ +SLI  YAK G    A  +F      +V+ W ++I  Y+  G   
Sbjct: 85  QRILVSGLSLDAYIASSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVP 144

Query: 539 EAIKLFEEMVMEGVAPDPVTFIGVL---SACSHVGLVDGGLKLFECMTEVYAIEPLVEHY 595
           EA  LF+EM  +G+ P  VT + +L   S  +HV  + G   L+  M+++     ++  Y
Sbjct: 145 EAFSLFDEMRRQGIQPSSVTVLSLLFGVSELAHVQCLHGCAILYGFMSDINLSNSMLNVY 204

Query: 596 A------------------------CMIDLLSRAGRLDEAFEMVKGMKIKP-NAG--IWG 628
                                     +I   ++ G + E   ++K M+++   AG   +G
Sbjct: 205 GKCGNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQTFG 264

Query: 629 TLLGACRMHQNIKLGR 644
           ++L        +KLGR
Sbjct: 265 SVLSVAASRGELKLGR 280



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 97/198 (48%), Gaps = 15/198 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V  QN  +T   K G ++++  +F  M++++ V++N+M++ YA+NG V +A  LF +M  
Sbjct: 396 VATQNSLVTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFNEMRS 455

Query: 75  RNLVSWNSMI---------AGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELE 125
            N    +  I          G LH  K   +  + + + RP +     ++  Y + G+L+
Sbjct: 456 DNQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGL-RPCILVDTSLVDMYCKCGDLD 514

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA----KKLLDAMPSKNIVSWNSMLSGY 181
            A+  F+ +P+  D   W+A++ GY   G    A     K L++    N V + S+LS  
Sbjct: 515 TAQRCFNQMPS-HDLVSWSAIIVGYGYHGKGEAALRFYSKFLESGMKPNHVIFLSVLSSC 573

Query: 182 TKNGEMHLASKFFEAMEE 199
           + NG +      +E+M +
Sbjct: 574 SHNGLVEQGLNIYESMTK 591


>gi|255565124|ref|XP_002523554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537116|gb|EEF38749.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 611

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 187/581 (32%), Positives = 318/581 (54%), Gaps = 29/581 (4%)

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW 205
           ++  YA   +   A++L D MP  N+ +W ++   Y ++G      + +  M+  DV+  
Sbjct: 36  LIQMYADCDHLFSAQRLFDKMPQPNVYAWTAIFGFYLRHGMYDKCVQNYGFMKYSDVLPD 95

Query: 206 NLM----LDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSGYARNGRMLEARRLFD 257
           N +    L    +L   +      + +     E N+    +++  Y + G    AR +F+
Sbjct: 96  NYVFPKVLRACTQLLWFEGGIWIHKDVIVCGCESNLQVCNSLIDMYVKCGNARSARLVFE 155

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLF----IEMPERNPVSWTTMIDGYVRIAKLDE 313
           +M  R++ +WN+MI+ YV  G  + A  L     ++  E + V+W T++D Y ++ + DE
Sbjct: 156 EMEERDLFSWNSMISGYVSNGLADLAVELLNCMRLDGFEPDVVTWNTLMDAYCQMGRFDE 215

Query: 314 ARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV-----CWNVMIKGYA 368
           A  +L Q+   NI + T +IS Y +    D + ++F  +   +VV     C   ++    
Sbjct: 216 AWEVLKQIEQPNIISWTTLISSYSKIGEHDMSLRVFQDMIIREVVSPDLDCLCSVLVSCR 275

Query: 369 QCG--RMDEAINLFRQMVNKDIVTWNT----MIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
             G  R  + I+ +   +  + V +++    ++  YA+  ++ DA+ +FE M K  + V+
Sbjct: 276 HIGALRSGKEIHGYGTKMETNTVFYSSAGAALLTMYAKCGRIQDAINVFELMDKS-DIVT 334

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482
           WNA+I GF++ +    A++ F  M +   K D +T++  L  C     LQ G  IH    
Sbjct: 335 WNAMILGFVELDLGKQAIECFREMQRMDIKNDQTTISTILPVCD----LQYGNPIHAYVR 390

Query: 483 KSGYVNDLF-VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
           KS  ++ +  V N++I MY KCG +++A  +F      DV+SWN++I G+ ++G+   A+
Sbjct: 391 KSITLSSVVTVWNAVIHMYCKCGCVRSAYTIFCSMPNKDVVSWNTMIGGFGMHGHGQAAL 450

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601
           KL +EM++ G+ P+  TF  VLSACSH GLVD G +LF  MTE Y+I P +EHY+C++D+
Sbjct: 451 KLLKEMILSGIFPNSTTFTSVLSACSHSGLVDEGFRLFRSMTEDYSITPRMEHYSCIVDM 510

Query: 602 LSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCY 661
           L+RAG+  +A   +  M ++P+  IWG LL ACR +QN+  GR+A E+L  +EP+    Y
Sbjct: 511 LARAGQFADAVTFIHKMPLEPDKSIWGALLAACRAYQNLDFGRLAAEQLIRMEPKCAGHY 570

Query: 662 ALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKN 702
             LSN++A AGRWD+  +VR  +EG G  K  G S IE ++
Sbjct: 571 VTLSNIYARAGRWDDAGRVRKEIEGKGLVKPSGQSLIETRD 611



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 153/646 (23%), Positives = 272/646 (42%), Gaps = 135/646 (20%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
           K+      +I  YA    +  A++LF++MPQ N+ +W ++   YL +    +  + +  M
Sbjct: 28  KDPFMLTKLIQMYADCDHLFSAQRLFDKMPQPNVYAWTAIFGFYLRHGMYDKCVQNYGFM 87

Query: 104 ----FRPDLFSWALMITCYTR----KGELEKARELFDLLPNKEDTACWNAMVAGYAKIGN 155
                 PD + +  ++   T+    +G +   +++           C N+++  Y K GN
Sbjct: 88  KYSDVLPDNYVFPKVLRACTQLLWFEGGIWIHKDVIVCGCESNLQVC-NSLIDMYVKCGN 146

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDG 211
              A+ + + M  +++ SWNSM+SGY  NG   LA +    M     E DVV+WN ++D 
Sbjct: 147 ARSARLVFEEMEERDLFSWNSMISGYVSNGLADLAVELLNCMRLDGFEPDVVTWNTLMDA 206

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV------ 265
           Y ++   D AW+  ++I + N++SW T++S Y++ G    + R+F  M IR VV      
Sbjct: 207 YCQMGRFDEAWEVLKQIEQPNIISWTTLISSYSKIGEHDMSLRVFQDMIIREVVSPDLDC 266

Query: 266 ------------------------------------AWNAMIAAYVQRGQIEEAARLFIE 289
                                               A  A++  Y + G+I++A  +F  
Sbjct: 267 LCSVLVSCRHIGALRSGKEIHGYGTKMETNTVFYSSAGAALLTMYAKCGRIQDAINVFEL 326

Query: 290 MPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF 349
           M + + V+W  MI G+V +    +A     +M   +I      IS  +    +   N I 
Sbjct: 327 MDKSDIVTWNAMILGFVELDLGKQAIECFREMQRMDIKNDQTTISTILPVCDLQYGNPIH 386

Query: 350 DKIG-----THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQM 404
             +      +  V  WN +I  Y +CG +  A  +F  M NKD+V+WNTMI G+      
Sbjct: 387 AYVRKSITLSSVVTVWNAVIHMYCKCGCVRSAYTIFCSMPNKDVVSWNTMIGGFGMHGHG 446

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSA 464
             A+K+ +EM           ++SG   N                      +T    LSA
Sbjct: 447 QAALKLLKEM-----------ILSGIFPNS---------------------TTFTSVLSA 474

Query: 465 CAHLAALQLGRQIHHLAIKSGYVNDLF-VGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
           C+H                SG V++ F +  S+   Y+   R+++               
Sbjct: 475 CSH----------------SGLVDEGFRLFRSMTEDYSITPRMEH--------------- 503

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMT 583
           ++ ++   A  G   +A+    +M +E   PD   +  +L+AC     +D G    E   
Sbjct: 504 YSCIVDMLARAGQFADAVTFIHKMPLE---PDKSIWGALLAACRAYQNLDFGRLAAE--- 557

Query: 584 EVYAIEP-LVEHYACMIDLLSRAGRLDEAFEMVKGMK----IKPNA 624
           ++  +EP    HY  + ++ +RAGR D+A  + K ++    +KP+ 
Sbjct: 558 QLIRMEPKCAGHYVTLSNIYARAGRWDDAGRVRKEIEGKGLVKPSG 603



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 109/443 (24%), Positives = 187/443 (42%), Gaps = 84/443 (18%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           + N    NS+I  Y K G    AR +FE+M +R+L SWNSMI+GY+ N     A EL + 
Sbjct: 128 ESNLQVCNSLIDMYVKCGNARSARLVFEEMEERDLFSWNSMISGYVSNGLADLAVELLNC 187

Query: 103 M----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNE 158
           M    F PD+ +W  ++  Y + G  ++A E+   +  + +   W  +++ Y+KIG ++ 
Sbjct: 188 MRLDGFEPDVVTWNTLMDAYCQMGRFDEAWEVLKQI-EQPNIISWTTLISSYSKIGEHDM 246

Query: 159 AKKLLDAMPSKNIVSWN------------------------------------------S 176
           + ++   M  + +VS +                                          +
Sbjct: 247 SLRVFQDMIIREVVSPDLDCLCSVLVSCRHIGALRSGKEIHGYGTKMETNTVFYSSAGAA 306

Query: 177 MLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSW 236
           +L+ Y K G +  A   FE M++ D+V+WN M+ G+VELD    A + F+++   ++ + 
Sbjct: 307 LLTMYAKCGRIQDAINVFELMDKSDIVTWNAMILGFVELDLGKQAIECFREMQRMDIKND 366

Query: 237 VTMLSGY-----ARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
            T +S        + G  + A           V  WNA+I  Y + G +  A  +F  MP
Sbjct: 367 QTTISTILPVCDLQYGNPIHAYVRKSITLSSVVTVWNAVIHMYCKCGCVRSAYTIFCSMP 426

Query: 292 ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK 351
            ++ VSW TMI G+        A +LL +M          ++SG   N            
Sbjct: 427 NKDVVSWNTMIGGFGMHGHGQAALKLLKEM----------ILSGIFPNSTT--------- 467

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT-----WNTMIAGYAQIRQMDD 406
                   +  ++   +  G +DE   LFR M     +T     ++ ++   A+  Q  D
Sbjct: 468 --------FTSVLSACSHSGLVDEGFRLFRSMTEDYSITPRMEHYSCIVDMLARAGQFAD 519

Query: 407 AVKIFEEMGKRRNTVSWNALISG 429
           AV    +M    +   W AL++ 
Sbjct: 520 AVTFIHKMPLEPDKSIWGALLAA 542



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 119/477 (24%), Positives = 209/477 (43%), Gaps = 98/477 (20%)

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA------- 345
           ++P   T +I  Y     L  A+RL D+MP  N+ A TA+   Y+++   D+        
Sbjct: 28  KDPFMLTKLIQMYADCDHLFSAQRLFDKMPQPNVYAWTAIFGFYLRHGMYDKCVQNYGFM 87

Query: 346 --------NQIFDK----------------IGTHDVVC--------WNVMIKGYAQCGRM 373
                   N +F K                I    +VC         N +I  Y +CG  
Sbjct: 88  KYSDVLPDNYVFPKVLRACTQLLWFEGGIWIHKDVIVCGCESNLQVCNSLIDMYVKCGNA 147

Query: 374 DEAINLFRQMVNKDIVTWNTMIAG-----------------------------------Y 398
             A  +F +M  +D+ +WN+MI+G                                   Y
Sbjct: 148 RSARLVFEEMEERDLFSWNSMISGYVSNGLADLAVELLNCMRLDGFEPDVVTWNTLMDAY 207

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV-LMTQEGKKADHST 457
            Q+ + D+A ++ +++ ++ N +SW  LIS + +   H  +L++F  ++ +E    D   
Sbjct: 208 CQMGRFDEAWEVLKQI-EQPNIISWTTLISSYSKIGEHDMSLRVFQDMIIREVVSPDLDC 266

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLF---VGNSLITMYAKCGRIQNAELLFK 514
           L   L +C H+ AL+ G++IH    K    N +F    G +L+TMYAKCGRIQ+A  +F+
Sbjct: 267 LCSVLVSCRHIGALRSGKEIHGYGTKME-TNTVFYSSAGAALLTMYAKCGRIQDAINVFE 325

Query: 515 DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574
             D  D+++WN++I G+       +AI+ F EM    +  D  T   +L  C     +  
Sbjct: 326 LMDKSDIVTWNAMILGFVELDLGKQAIECFREMQRMDIKNDQTTISTILPVCD----LQY 381

Query: 575 GLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGI--WGTLLG 632
           G  +   + +   +  +V  +  +I +  + G +  A+ +   M   PN  +  W T++G
Sbjct: 382 GNPIHAYVRKSITLSSVVTVWNAVIHMYCKCGCVRSAYTIFCSM---PNKDVVSWNTMIG 438

Query: 633 ACRMHQNIKLGRIAVEKLSEL-----EPQKTSCYALLSNMHAEAGRWDEVEKVRVSM 684
              MH +   G+ A++ L E+      P  T+  ++LS   + +G  DE  ++  SM
Sbjct: 439 GFGMHGH---GQAALKLLKEMILSGIFPNSTTFTSVLSAC-SHSGLVDEGFRLFRSM 491



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/408 (22%), Positives = 193/408 (47%), Gaps = 38/408 (9%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V   N  +    + GR +EA ++  Q+ Q N +++ ++IS+Y+K G  + + ++F+ M  
Sbjct: 197 VVTWNTLMDAYCQMGRFDEAWEVLKQIEQPNIISWTTLISSYSKIGEHDMSLRVFQDMII 256

Query: 75  RNLVSWN-----SMIAGYLHNDKVKEARELF---DKMFRPDLF---SWALMITCYTRKGE 123
           R +VS +     S++    H   ++  +E+     KM    +F   + A ++T Y + G 
Sbjct: 257 REVVSPDLDCLCSVLVSCRHIGALRSGKEIHGYGTKMETNTVFYSSAGAALLTMYAKCGR 316

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTK 183
           ++ A  +F+L+ +K D   WNAM+ G+ ++    +A +    M   +I +  + +S    
Sbjct: 317 IQDAINVFELM-DKSDIVTWNAMILGFVELDLGKQAIECFREMQRMDIKNDQTTISTILP 375

Query: 184 NGEMHLASKFFEAMEERDVVS-----WNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
             ++   +     + +   +S     WN ++  Y +   + SA+  F  +P ++VVSW T
Sbjct: 376 VCDLQYGNPIHAYVRKSITLSSVVTVWNAVIHMYCKCGCVRSAYTIFCSMPNKDVVSWNT 435

Query: 239 MLSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
           M+ G+  +G    A +L  +M +     N   + ++++A    G ++E  RLF  M E  
Sbjct: 436 MIGGFGMHGHGQAALKLLKEMILSGIFPNSTTFTSVLSACSHSGLVDEGFRLFRSMTEDY 495

Query: 295 PVS-----WTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMD----E 344
            ++     ++ ++D   R  +  +A   + +MP + + +   A+++     + +D     
Sbjct: 496 SITPRMEHYSCIVDMLARAGQFADAVTFIHKMPLEPDKSIWGALLAACRAYQNLDFGRLA 555

Query: 345 ANQIF---DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIV 389
           A Q+     K   H V   N+    YA+ GR D+A  + +++  K +V
Sbjct: 556 AEQLIRMEPKCAGHYVTLSNI----YARAGRWDDAGRVRKEIEGKGLV 599



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 108/229 (47%), Gaps = 11/229 (4%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
           L  C++L +L  G+QIH     SG+  D F+   LI MYA C  + +A+ LF      +V
Sbjct: 2   LQLCSNLKSLHAGKQIHQQITVSGWGKDPFMLTKLIQMYADCDHLFSAQRLFDKMPQPNV 61

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC 581
            +W ++   Y  +G   + ++ +  M    V PD   F  VL AC+ +   +GG+ + + 
Sbjct: 62  YAWTAIFGFYLRHGMYDKCVQNYGFMKYSDVLPDNYVFPKVLRACTQLLWFEGGIWIHKD 121

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIK 641
           +  V   E  ++    +ID+  + G    A  + + M+ + +   W +++     + +  
Sbjct: 122 VI-VCGCESNLQVCNSLIDMYVKCGNARSARLVFEEME-ERDLFSWNSMISG---YVSNG 176

Query: 642 LGRIAVE-----KLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685
           L  +AVE     +L   EP   + +  L + + + GR+DE  +V   +E
Sbjct: 177 LADLAVELLNCMRLDGFEPDVVT-WNTLMDAYCQMGRFDEAWEVLKQIE 224


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 191/562 (33%), Positives = 302/562 (53%), Gaps = 60/562 (10%)

Query: 208 MLDGYVELDDLDSAW-KFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA 266
           +LD Y ++  L +   K F     +N    + ++  YA  G    AR +FD +P RNV+ 
Sbjct: 41  VLDQYPDIKTLKNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIF 100

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
           +N MI +Y+     ++A  +F     R+ VS     D Y     L +A    D +    I
Sbjct: 101 YNVMIRSYMNNHLYDDALLVF-----RDMVSGGFSPDHYTYPCVL-KACSCSDNL---RI 151

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
             Q   + G V    +D            ++   N +I  Y +CG + EA  +  +M +K
Sbjct: 152 GLQ---LHGAVFKVGLDL-----------NLFVGNGLIALYGKCGCLPEARCVLDEMQSK 197

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMG------------------------------- 415
           D+V+WN+M+AGYAQ  Q DDA+ I  EM                                
Sbjct: 198 DVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEE 257

Query: 416 -----KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAA 470
                ++++ VSWN +IS +++N     ++ +++ M +   + D  T A  L AC  L+A
Sbjct: 258 MFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSA 317

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
           L LGR+IH    +     ++ + NSLI MYA+CG +++A+ +F      DV SW SLI+ 
Sbjct: 318 LLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISA 377

Query: 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP 590
           Y + G    A+ LF EM   G +PD + F+ +LSACSH GL++ G   F+ MT+ Y I P
Sbjct: 378 YGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYKITP 437

Query: 591 LVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL 650
           ++EH+AC++DLL R+GR+DEA+ ++K M +KPN  +WG LL +CR++ N+ +G +A +KL
Sbjct: 438 IIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGILAADKL 497

Query: 651 SELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSG 710
            +L P+++  Y LLSN++A+AGRW EV  +R  M+    +K PG S +E+ NQ+HTFL+G
Sbjct: 498 LQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAG 557

Query: 711 DPKQCRTAEICNTLKTLAAQIR 732
           D    ++ EI   L  L  +++
Sbjct: 558 DTYHPQSKEIYEELSVLVGKMK 579



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 100/437 (22%), Positives = 190/437 (43%), Gaps = 72/437 (16%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKE 95
           K+F+    +N      ++ AYA  G    AR +F+ +P+RN++ +N MI  Y++N    +
Sbjct: 57  KVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDD 116

Query: 96  ARELFDKM----FRPDLFSWALMITCYTRKGELEKAREL--------FDLLPNKEDTACW 143
           A  +F  M    F PD +++  ++   +    L    +L         DL     +    
Sbjct: 117 ALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDL-----NLFVG 171

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA------------- 190
           N ++A Y K G   EA+ +LD M SK++VSWNSM++GY +N +   A             
Sbjct: 172 NGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQK 231

Query: 191 ------------------------SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
                                    + F  +E++ +VSWN+M+  Y++      +   + 
Sbjct: 232 PDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYL 291

Query: 227 KIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRG 278
           ++     E + ++  ++L        +L  RR+ + +  +    N++  N++I  Y + G
Sbjct: 292 QMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCG 351

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM----PYKNIAAQTAMIS 334
            +E+A R+F  M  R+  SWT++I  Y    +   A  L  +M       +  A  A++S
Sbjct: 352 CLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILS 411

Query: 335 GYVQNKRMDEANQIFDKIG-----THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK-DI 388
               +  ++E    F ++      T  +  +  ++    + GR+DEA N+ +QM  K + 
Sbjct: 412 ACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNE 471

Query: 389 VTWNTMIAGYAQIRQMD 405
             W  +++       MD
Sbjct: 472 RVWGALLSSCRVYSNMD 488



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 141/313 (45%), Gaps = 54/313 (17%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDA--------- 65
           +F  N  I   GK G + EA  +  +M  K+ V++NSM++ YA+N + +DA         
Sbjct: 168 LFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDG 227

Query: 66  ----------------------------RKLFEQMPQRNLVSWNSMIAGYLHNDKVKEAR 97
                                        ++F  + +++LVSWN MI+ Y+ N    ++ 
Sbjct: 228 VRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSV 287

Query: 98  ELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGY 150
           +L+ +M      PD  + A ++        L   R + + +  K+   +    N+++  Y
Sbjct: 288 DLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMY 347

Query: 151 AKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWN 206
           A+ G   +AK++ D M  +++ SW S++S Y   G+ + A   F  M+      D +++ 
Sbjct: 348 ARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFV 407

Query: 207 LMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPI 261
            +L        L+    +F+++ +   ++     +  ++    R+GR+ EA  +  QMP+
Sbjct: 408 AILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPM 467

Query: 262 R-NVVAWNAMIAA 273
           + N   W A++++
Sbjct: 468 KPNERVWGALLSS 480


>gi|345505214|gb|AEN99831.1| chlororespiratory reduction 4 [Brassica rapa]
          Length = 612

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 166/447 (37%), Positives = 265/447 (59%), Gaps = 9/447 (2%)

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY--KN 325
           N +I  Y++ G +  A ++F  MP+R+ VS+ +MIDGY++   ++ A  L   MP   +N
Sbjct: 167 NCLIGLYIKCGCLGFARQVFDRMPQRDSVSYNSMIDGYLKCGLVESAGELFGLMPREKRN 226

Query: 326 IAAQTAMISGYVQNKRMDEAN---QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
           +    +MI GY Q  R D  N   ++FD++   D++ WN MI GY + GR+++A  LF  
Sbjct: 227 LITWNSMIGGYAQ--RADGVNVAAKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFDV 284

Query: 383 MVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI 442
           M  +D+VTW  MI GY ++  + +A  +F++M   R+ V +N+++SG +QN +H++AL++
Sbjct: 285 MPRRDVVTWAIMIDGYGKLGLVHEAKTLFDQM-PHRDVVVYNSMMSGXVQNRYHMEALEV 343

Query: 443 FVLMTQEGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYA 501
           F  M +E     D ++L   LSA A L  L     +H   ++  + +   +G +LI MY+
Sbjct: 344 FNHMEKESHLTPDETSLVIVLSAXAQLGRLSKAIDMHLYIVEKQFPSSGKLGVALIDMYS 403

Query: 502 KCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIG 561
           KCG IQ+A  +F+  +   +  WN++I G A++G    A  +  ++    + PD +TF+G
Sbjct: 404 KCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLLQIERRSIKPDHITFVG 463

Query: 562 VLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIK 621
           VL+ACSH GLV  GL  FE M   + IEP ++HY CM+D+L+R+G ++ A  +++GM I+
Sbjct: 464 VLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSIELAKNLIEGMPIE 523

Query: 622 PNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVR 681
           PN  IW T L AC  H+  + G +  + L        S Y LLSNM+A  G W +V +VR
Sbjct: 524 PNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYASNGMWKDVRRVR 583

Query: 682 VSMEGSGAQKQPGCSWIEVKNQIHTFL 708
             M+    +K PGCSWIE+  ++H FL
Sbjct: 584 TMMKEKNIEKIPGCSWIELDGRVHEFL 610



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 125/451 (27%), Positives = 235/451 (52%), Gaps = 36/451 (7%)

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKK-- 161
           D F W ++I  ++   +  KA  L  L+       D   ++  +   +++G   E  +  
Sbjct: 92  DPFLWNVVIKSHSHGVDPRKALFLLCLMLENGVPVDKFSFSLALKACSRLGFVKEGTQVH 151

Query: 162 --LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLD 219
             L+      ++   N ++  Y K G +  A + F+ M +RD VS+N M+DGY++   ++
Sbjct: 152 GFLIKTGTWSDLFLQNCLIGLYIKCGCLGFARQVFDRMPQRDSVSYNSMIDGYLKCGLVE 211

Query: 220 SAWKFFQKIP--EQNVVSWVTMLSGYARNGRMLE-ARRLFDQMPIRNVVAWNAMIAAYVQ 276
           SA + F  +P  ++N+++W +M+ GYA+    +  A +LFD+MP +++++WN+MI  YV+
Sbjct: 212 SAGELFGLMPREKRNLITWNSMIGGYAQRADGVNVAAKLFDEMPEKDLISWNSMIGGYVK 271

Query: 277 RGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGY 336
            G+IE+A  LF  MP R+ V+W  MIDGY ++  + EA+ L DQMP++++    +M+SG 
Sbjct: 272 HGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHEAKTLFDQMPHRDVVVYNSMMSGX 331

Query: 337 VQNKRMDEANQIFDKIG-----THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTW 391
           VQN+   EA ++F+ +      T D     +++   AQ GR+ +AI++   +V K   + 
Sbjct: 332 VQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAXAQLGRLSKAIDMHLYIVEKQFPSS 391

Query: 392 N----TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMT 447
                 +I  Y++   +  A+++FE + + ++   WNA+I G   +     A  + + + 
Sbjct: 392 GKLGVALIDMYSKCGSIQHAMRVFEGI-ESKSIDHWNAMIGGLAVHGLGESAFDMLLQIE 450

Query: 448 QEGKKADHSTLACALSACAH-------LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500
           +   K DH T    L+AC+H       L   +L R+ H +  +  +         ++ + 
Sbjct: 451 RRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHY------GCMVDIL 504

Query: 501 AKCGRIQNAELLFK--DADPVDVISWNSLIA 529
           A+ G I+ A+ L +    +P DVI W + + 
Sbjct: 505 ARSGSIELAKNLIEGMPIEPNDVI-WRTFLT 534



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 106/294 (36%), Positives = 158/294 (53%), Gaps = 13/294 (4%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F QN  I    K G +  A ++F +M Q+++V+YNSMI  Y K G V  A +LF  M
Sbjct: 161 SDLFLQNCLIGLYIKCGCLGFARQVFDRMPQRDSVSYNSMIDGYLKCGLVESAGELFGLM 220

Query: 73  P--QRNLVSWNSMIAGYLHN-DKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARE 129
           P  +RNL++WNSMI GY    D V  A +LFD+M   DL SW  MI  Y + G +E A+ 
Sbjct: 221 PREKRNLITWNSMIGGYAQRADGVNVAAKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKG 280

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           LFD++P + D   W  M+ GY K+G  +EAK L D MP +++V +NSM+SG  +N     
Sbjct: 281 LFDVMP-RRDVVTWAIMIDGYGKLGLVHEAKTLFDQMPHRDVVVYNSMMSGXVQNRYHME 339

Query: 190 ASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS----WVTML 240
           A + F  ME+      D  S  ++L    +L  L  A      I E+   S     V ++
Sbjct: 340 ALEVFNHMEKESHLTPDETSLVIVLSAXAQLGRLSKAIDMHLYIVEKQFPSSGKLGVALI 399

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
             Y++ G +  A R+F+ +  +++  WNAMI      G  E A  + +++  R+
Sbjct: 400 DMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLLQIERRS 453



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 118/417 (28%), Positives = 199/417 (47%), Gaps = 29/417 (6%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNT----VTYNSMISAYAKNGRVNDARKLFEQ 71
           F+ +  +    + G V+E  ++   + +  T       N +I  Y K G +  AR++F++
Sbjct: 129 FSFSLALKACSRLGFVKEGTQVHGFLIKTGTWSDLFLQNCLIGLYIKCGCLGFARQVFDR 188

Query: 72  MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP--DLFSWALMITCYTRKGE-LEKAR 128
           MPQR+ VS+NSMI GYL    V+ A ELF  M R   +L +W  MI  Y ++ + +  A 
Sbjct: 189 MPQRDSVSYNSMIDGYLKCGLVESAGELFGLMPREKRNLITWNSMIGGYAQRADGVNVAA 248

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
           +LFD +P K D   WN+M+ GY K G   +AK L D MP +++V+W  M+ GY K G +H
Sbjct: 249 KLFDEMPEK-DLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVH 307

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV-----SWVTMLSGY 243
            A   F+ M  RDVV +N M+ G V+      A + F  + +++ +     S V +LS  
Sbjct: 308 EAKTLFDQMPHRDVVVYNSMMSGXVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAX 367

Query: 244 ARNGRMLEARRLF-----DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW 298
           A+ GR+ +A  +       Q P    +   A+I  Y + G I+ A R+F  +  ++   W
Sbjct: 368 AQLGRLSKAIDMHLYIVEKQFPSSGKLG-VALIDMYSKCGSIQHAMRVFEGIESKSIDHW 426

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYV----QNKRMDEANQIFDKIGT 354
             MI G       + A  +L Q+  ++I        G +     +  + E    F+ +  
Sbjct: 427 NAMIGGLAVHGLGESAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRR 486

Query: 355 HDVV-----CWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAGYAQIRQMD 405
              +      +  M+   A+ G ++ A NL   M +  + V W T +   +  ++ +
Sbjct: 487 KHKIEPRLQHYGCMVDILARSGSIELAKNLIEGMPIEPNDVIWRTFLTACSHHKEFE 543



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 67/136 (49%)

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
           G+  +   WN +I           AL +  LM + G   D  + + AL AC+ L  ++ G
Sbjct: 88  GEVEDPFLWNVVIKSHSHGVDPRKALFLLCLMLENGVPVDKFSFSLALKACSRLGFVKEG 147

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
            Q+H   IK+G  +DLF+ N LI +Y KCG +  A  +F      D +S+NS+I GY   
Sbjct: 148 TQVHGFLIKTGTWSDLFLQNCLIGLYIKCGCLGFARQVFDRMPQRDSVSYNSMIDGYLKC 207

Query: 535 GNATEAIKLFEEMVME 550
           G    A +LF  M  E
Sbjct: 208 GLVESAGELFGLMPRE 223


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 185/499 (37%), Positives = 275/499 (55%), Gaps = 30/499 (6%)

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW 298
           M++ YA +G +  +  +F+ +   + + +N+MI AY + G  E     +  M      SW
Sbjct: 111 MVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMH-----SW 165

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH-DV 357
               D +     L  +  LL     K +                   + +  +IG   D+
Sbjct: 166 GFTGDYFTFPFVLKSSVELLSVWMGKCV-------------------HGLILRIGLQFDL 206

Query: 358 VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
                +I  Y +CG +++A  +F  M  +D+ +WN ++AGY +   +D A+ IFE M   
Sbjct: 207 YVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERM-PW 265

Query: 418 RNTVSWNALISGFLQNEFHLDALKIFVLMTQE--GKKADHSTLACALSACAHLAALQLGR 475
           RN VSW  +ISG+ Q+     AL +F  M +E  G + +  T+   L ACA L+ L+ GR
Sbjct: 266 RNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGR 325

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK--DADPVDVISWNSLIAGYAI 533
           QIH LA + G  ++  V  +L  MYAKCG + +A   F   + +  ++I+WN++I  YA 
Sbjct: 326 QIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYAS 385

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVE 593
            G+  +A+  F EM+  G+ PD +TF G+LS CSH GLVD GLK F  M+  Y+I P VE
Sbjct: 386 YGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVE 445

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653
           HYAC+ DLL RAGRL EA ++V  M +     IWG+LL ACR H+N+++   A  KL  L
Sbjct: 446 HYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVL 505

Query: 654 EPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPK 713
           EP+ T  Y LLSNM+AEAGRW EV+K+R  ++  G +K PGCSWIE+  + H FL GD  
Sbjct: 506 EPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTS 565

Query: 714 QCRTAEICNTLKTLAAQIR 732
             +  EI   L+ L  +++
Sbjct: 566 HPQGKEIYMFLEALPEKMK 584



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 162/323 (50%), Gaps = 30/323 (9%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           I   GK G + +A K+F  M+ ++  ++N++++ Y K+G ++ A  +FE+MP RN+VSW 
Sbjct: 213 IILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWT 272

Query: 82  SMIAGYLHNDKVKEARELFDKM------FRPDLFSWALMITCYTRKGELEKARELFDL-- 133
           +MI+GY  +   ++A  LFD+M       RP+  +   ++    +   LE+ R++ +L  
Sbjct: 273 TMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELAC 332

Query: 134 -LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM--PSKNIVSWNSMLSGYTKNGE-MHL 189
            +    + +   A+ A YAK G+  +A+   D +    KN+++WN+M++ Y   G  +  
Sbjct: 333 RMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQA 392

Query: 190 ASKFFEAME---ERDVVSWNLMLDGYVELDDLDSAWKFFQKI-------PEQNVVSWVTM 239
            S F E ++   + D +++  +L G      +D   K+F  +       P     + V  
Sbjct: 393 VSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVAD 452

Query: 240 LSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE----EAARLFIEMPERN 294
           L G  R GR+ EA +L  +MP+      W +++AA  +   +E     A +LF+  PE N
Sbjct: 453 LLG--RAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPE-N 509

Query: 295 PVSWTTMIDGYVRIAKLDEARRL 317
             ++  + + Y    +  E  +L
Sbjct: 510 TGNYVLLSNMYAEAGRWQEVDKL 532



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 93/406 (22%), Positives = 182/406 (44%), Gaps = 90/406 (22%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           +K +     SG ++ ++ +F+ + + +++ +NSMI AYA+ G             +R + 
Sbjct: 109 SKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYG-----------FAERTVA 157

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           ++ SM                          SW      +T    L+ + EL  +   K 
Sbjct: 158 TYFSM-------------------------HSWGFTGDYFTFPFVLKSSVELLSVWMGK- 191

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
              C + ++    +IG               ++    S++  Y K GE++ A K F+ M 
Sbjct: 192 ---CVHGLIL---RIGL------------QFDLYVATSLIILYGKCGEINDAGKVFDNMT 233

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
            RDV SWN +L GY +   +D+A   F+++P +N+VSW TM+SGY+++G   +A  LFD+
Sbjct: 234 IRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDE 293

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
           M                    ++E + +       N V+  +++    +++ L+  R++ 
Sbjct: 294 M--------------------VKEDSGV-----RPNWVTIMSVLPACAQLSTLERGRQIH 328

Query: 319 D---QMPY-KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHD--VVCWNVMIKGYAQCGR 372
           +   +M    N +   A+ + Y +   + +A   FDK+  ++  ++ WN MI  YA  G 
Sbjct: 329 ELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGH 388

Query: 373 MDEAINLFRQMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEM 414
             +A++ FR+M+   I    +T+  +++G +    +D  +K F  M
Sbjct: 389 GLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHM 434



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 173/401 (43%), Gaps = 43/401 (10%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           Q   +  + M++ YA +G ++ +  +F  + + + + +NSMI  Y      +     +  
Sbjct: 102 QPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFS 161

Query: 103 MFRPDLFSWALMITCYTRKGELEKARELFDLLPNK------------EDTACWNAMVAGY 150
           M      SW      +T    L+ + EL  +   K             D     +++  Y
Sbjct: 162 M-----HSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILY 216

Query: 151 AKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLD 210
            K G  N+A K+ D M  +++ SWN++L+GYTK+G +  A   FE M  R++VSW  M+ 
Sbjct: 217 GKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMIS 276

Query: 211 GYVELDDLDSAWKFFQKIPEQNV---VSWVTMLSGYARNGRM--LEARRLFDQMPIR--- 262
           GY +      A   F ++ +++     +WVT++S      ++  LE  R   ++  R   
Sbjct: 277 GYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGL 336

Query: 263 --NVVAWNAMIAAYVQRGQIEEAARLF--IEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
             N     A+ A Y + G + +A   F  +   E+N ++W TMI  Y       +A    
Sbjct: 337 NSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTF 396

Query: 319 DQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA------ 368
            +M    I       T ++SG   +  +D   + F+ + T   +  N  ++ YA      
Sbjct: 397 REMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSI--NPRVEHYACVADLL 454

Query: 369 -QCGRMDEAINLFRQM-VNKDIVTWNTMIAGYAQIRQMDDA 407
            + GR+ EA  L  +M +      W +++A   + R ++ A
Sbjct: 455 GRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMA 495



 Score = 44.7 bits (104), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 71/177 (40%), Gaps = 24/177 (13%)

Query: 468 LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSL 527
           L  L+LG Q+H   +  G      VG+ ++  YA  G I ++  +F        + +NS+
Sbjct: 83  LNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSM 142

Query: 528 IAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA-----------CSHVGLVDGGL 576
           I  YA  G A   +  +  M   G   D  TF  VL +           C H  ++  GL
Sbjct: 143 IRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGL 202

Query: 577 KLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
           +      ++Y    L       I L  + G +++A ++   M I+ +   W  LL  
Sbjct: 203 QF-----DLYVATSL-------IILYGKCGEINDAGKVFDNMTIR-DVSSWNALLAG 246


>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1329

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 172/506 (33%), Positives = 288/506 (56%), Gaps = 17/506 (3%)

Query: 236  WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM--PER 293
            ++T  S +    R+  A     QM   NV  +NA+I  +V       +   ++ M     
Sbjct: 818  FITACSSF---NRLDLAVSFMTQMQKPNVFVYNALIKGFVTCSHPIRSLEFYVRMLRDSV 874

Query: 294  NPVSWT--TMIDGYVRIAKLDEARRLLDQMPYK-----NIAAQTAMISGYVQNKRMDEAN 346
            +P S+T  +++      +   E+   L    +K     ++  QT +I  Y  + R+ EA 
Sbjct: 875  SPSSYTYSSLVQASAFASGFGES---LQAHIWKFGFGFHVQIQTTLIGFYSASGRIREAR 931

Query: 347  QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDD 406
            ++FD++   D V W  M+  Y Q   MD A +L  QM  K+  TWN +I GY ++  ++ 
Sbjct: 932  KVFDEMPERDDVTWTTMVSAYRQVLDMDSANSLANQMPEKNEATWNCLIDGYTRLGNLEL 991

Query: 407  AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
            A  +F +M   ++ +SW  +I+G+ +N+ + +A+ +F  M +EG   D  T++  +SACA
Sbjct: 992  AESLFNQM-PVKDIISWTTMINGYSRNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACA 1050

Query: 467  HLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNS 526
            HL  L++G+++H   +++G+V D+++G++L+ MY+KCG ++ A L+F +    ++  WNS
Sbjct: 1051 HLGVLEIGKEVHMYTVQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNS 1110

Query: 527  LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVY 586
            +I G A +G A EA+K+F +M ME V P+ VTF+ V +AC+H GLV+ G +++  M + Y
Sbjct: 1111 IIEGLAAHGFAQEALKMFAKMEMESVKPNTVTFVSVFTACTHAGLVEEGRRIYRSMIDDY 1170

Query: 587  AIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIA 646
            +I   VEHY CM+ L S+AG + EA E++  M+ +PNA IWG LL  CR+H+N+++  IA
Sbjct: 1171 SIVSNVEHYGCMVHLFSKAGLIYEALELIGSMEFEPNAVIWGALLDGCRIHKNLEIAEIA 1230

Query: 647  VEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQK-QPGCSWIEVKNQIH 705
              KL  LEP  +  Y LL +M+AE  RW +V ++R  M   G +K  PG S I +  + H
Sbjct: 1231 FNKLMILEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPGTSSIRIDKRDH 1290

Query: 706  TFLSGDPKQCRTAEICNTLKTLAAQI 731
             F + D     + E+C  L  +  Q+
Sbjct: 1291 LFAAADKSHSASDEVCLLLDEIYEQM 1316



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 119/454 (26%), Positives = 211/454 (46%), Gaps = 28/454 (6%)

Query: 117  CYTRKGELEKARELFDLLPNKEDTACW--NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSW 174
            C T K  LE A  L  ++   +   C+  N  +   +     + A   +  M   N+  +
Sbjct: 790  CSTPK-LLESA--LAAMIKTSQTQNCYLMNQFITACSSFNRLDLAVSFMTQMQKPNVFVY 846

Query: 175  NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA---------WKFF 225
            N+++ G+        + +F+  M    V   +      V+     S          WKF 
Sbjct: 847  NALIKGFVTCSHPIRSLEFYVRMLRDSVSPSSYTYSSLVQASAFASGFGESLQAHIWKFG 906

Query: 226  QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAAR 285
                  +V    T++  Y+ +GR+ EAR++FD+MP R+ V W  M++AY Q   ++ A  
Sbjct: 907  FGF---HVQIQTTLIGFYSASGRIREARKVFDEMPERDDVTWTTMVSAYRQVLDMDSANS 963

Query: 286  LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345
            L  +MPE+N  +W  +IDGY R+  L+ A  L +QMP K+I + T MI+GY +NKR  EA
Sbjct: 964  LANQMPEKNEATWNCLIDGYTRLGNLELAESLFNQMPVKDIISWTTMINGYSRNKRYREA 1023

Query: 346  NQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVTWNTMIAG 397
              +F K+       D V  + +I   A  G ++    +    V      D+   + ++  
Sbjct: 1024 IAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTVQNGFVLDVYIGSALVDM 1083

Query: 398  YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHST 457
            Y++   ++ A+ +F  + K +N   WN++I G   + F  +ALK+F  M  E  K +  T
Sbjct: 1084 YSKCGSLERALLVFFNLPK-KNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNTVT 1142

Query: 458  LACALSACAHLAALQLGRQIHHLAIKS-GYVNDLFVGNSLITMYAKCGRIQNA-ELLFKD 515
                 +AC H   ++ GR+I+   I     V+++     ++ +++K G I  A EL+   
Sbjct: 1143 FVSVFTACTHAGLVEEGRRIYRSMIDDYSIVSNVEHYGCMVHLFSKAGLIYEALELIGSM 1202

Query: 516  ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549
                + + W +L+ G  I+ N   A   F ++++
Sbjct: 1203 EFEPNAVIWGALLDGCRIHKNLEIAEIAFNKLMI 1236



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/427 (23%), Positives = 196/427 (45%), Gaps = 39/427 (9%)

Query: 1    MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
            + A +K+   +  Y+ NQ   IT      R++ A+   +QM + N   YN++I  +    
Sbjct: 800  LAAMIKTSQTQNCYLMNQ--FITACSSFNRLDLAVSFMTQMQKPNVFVYNALIKGFVTCS 857

Query: 61   RVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA--RELFDKMFRPDLFSWAL----- 113
                + + + +M  R+ VS +S    Y ++  V+ +     F +  +  ++ +       
Sbjct: 858  HPIRSLEFYVRM-LRDSVSPSS----YTYSSLVQASAFASGFGESLQAHIWKFGFGFHVQ 912

Query: 114  ----MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK 169
                +I  Y+  G + +AR++FD +P ++D   W  MV+ Y ++ + + A  L + MP K
Sbjct: 913  IQTTLIGFYSASGRIREARKVFDEMPERDDVT-WTTMVSAYRQVLDMDSANSLANQMPEK 971

Query: 170  NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP 229
            N  +WN ++ GYT+ G + LA   F  M  +D++SW  M++GY        A   F K+ 
Sbjct: 972  NEATWNCLIDGYTRLGNLELAESLFNQMPVKDIISWTTMINGYSRNKRYREAIAVFYKMM 1031

Query: 230  EQNV----VSWVTMLSGYARNGRMLEARRLFDQMPIRN-----VVAWNAMIAAYVQRGQI 280
            E+ +    V+  T++S  A  G +LE  +      ++N     V   +A++  Y + G +
Sbjct: 1032 EEGIIPDEVTMSTVISACAHLG-VLEIGKEVHMYTVQNGFVLDVYIGSALVDMYSKCGSL 1090

Query: 281  EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMI------- 333
            E A  +F  +P++N   W ++I+G        EA ++  +M  +++   T          
Sbjct: 1091 ERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNTVTFVSVFTAC 1150

Query: 334  --SGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVT 390
              +G V+  R    + I D     +V  +  M+  +++ G + EA+ L   M    + V 
Sbjct: 1151 THAGLVEEGRRIYRSMIDDYSIVSNVEHYGCMVHLFSKAGLIYEALELIGSMEFEPNAVI 1210

Query: 391  WNTMIAG 397
            W  ++ G
Sbjct: 1211 WGALLDG 1217



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 161/345 (46%), Gaps = 28/345 (8%)

Query: 12   GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
            G +V  Q   I     SGR+ EA K+F +M +++ VT+ +M+SAY +   ++ A  L  Q
Sbjct: 908  GFHVQIQTTLIGFYSASGRIREARKVFDEMPERDDVTWTTMVSAYRQVLDMDSANSLANQ 967

Query: 72   MPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF 131
            MP++N  +WN +I GY     ++ A  LF++M   D+ SW  MI  Y+R     +A  +F
Sbjct: 968  MPEKNEATWNCLIDGYTRLGNLELAESLFNQMPVKDIISWTTMINGYSRNKRYREAIAVF 1027

Query: 132  ------DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV----SWNSMLSGY 181
                   ++P   D    + +++  A +G     K++         V      ++++  Y
Sbjct: 1028 YKMMEEGIIP---DEVTMSTVISACAHLGVLEIGKEVHMYTVQNGFVLDVYIGSALVDMY 1084

Query: 182  TKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWV 237
            +K G +  A   F  + ++++  WN +++G         A K F K+     + N V++V
Sbjct: 1085 SKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNTVTFV 1144

Query: 238  TMLSGYARNGRMLEARRLFDQM-----PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP- 291
            ++ +     G + E RR++  M      + NV  +  M+  + + G I EA  L   M  
Sbjct: 1145 SVFTACTHAGLVEEGRRIYRSMIDDYSIVSNVEHYGCMVHLFSKAGLIYEALELIGSMEF 1204

Query: 292  ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGY 336
            E N V W  ++DG  RI K  E    + ++ +  +     M SGY
Sbjct: 1205 EPNAVIWGALLDG-CRIHKNLE----IAEIAFNKLMILEPMNSGY 1244



 Score = 39.3 bits (90), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 30/154 (19%), Positives = 65/154 (42%), Gaps = 4/154 (2%)

Query: 482 IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
           IK+    + ++ N  IT  +   R+  A          +V  +N+LI G+    +   ++
Sbjct: 804 IKTSQTQNCYLMNQFITACSSFNRLDLAVSFMTQMQKPNVFVYNALIKGFVTCSHPIRSL 863

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601
           + +  M+ + V+P   T+  ++ A +      G  +  +     +     V+    +I  
Sbjct: 864 EFYVRMLRDSVSPSSYTYSSLVQASA---FASGFGESLQAHIWKFGFGFHVQIQTTLIGF 920

Query: 602 LSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACR 635
            S +GR+ EA ++   M  + +   W T++ A R
Sbjct: 921 YSASGRIREARKVFDEMPERDDV-TWTTMVSAYR 953


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 178/510 (34%), Positives = 287/510 (56%), Gaps = 15/510 (2%)

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE--RN 294
           + ++  Y+  G    AR +FD+   +NVV +N MI +YV      EA  +F  M     N
Sbjct: 75  IKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFN 134

Query: 295 PVSWT--TMIDGYVRIAKLDEARRLLDQMPY----KNIAAQTAMISGYVQNKRMDEANQI 348
           P  +T   ++     +  L    ++ D +       N+    A+++ Y +   + EA ++
Sbjct: 135 PDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKV 194

Query: 349 FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTM--IAGYAQIR 402
            D++   DVV WN M+ GYAQ G+ D+A+ + ++M    +N D  T  ++  +  Y  + 
Sbjct: 195 LDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLE 254

Query: 403 QMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
            +     +FE M K+ N +SWN +I+ ++ N    +A+ +F+ M + G K D  T+A  L
Sbjct: 255 NVQYIHNMFERMTKK-NLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLL 313

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
            AC  L+AL LGR++H    K     +L + N+L+ MYAKCG ++ A  +F      DV+
Sbjct: 314 PACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVV 373

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           SW S+++ Y  +G   +A+ LF +M+  G  PD + F+ VLSACSH GL+D G   F  M
Sbjct: 374 SWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMM 433

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKL 642
           TE Y I P +EH+ACM+DL  RAG ++EA+  +K M ++PN  +WG LL ACR+H  + +
Sbjct: 434 TEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDI 493

Query: 643 GRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKN 702
           G +A + L +L P+++  Y LLSN++A+AG W +V  VR +M+  G +K PG S +E+  
Sbjct: 494 GLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNG 553

Query: 703 QIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           Q+HTFL+GD    +   I   L  L  +++
Sbjct: 554 QVHTFLAGDQYHPQAKNIYGELDVLVGKMK 583



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 202/413 (48%), Gaps = 40/413 (9%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPD 107
           ++ AY+  G  + AR +F++  ++N+V +N MI  Y++N+   EA  +F  M    F PD
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136

Query: 108 LFSWALMITCYTRKGELEKARELFD-LLPNKEDTACW--NAMVAGYAKIGNYNEAKKLLD 164
            +++  ++   +    L    ++ D ++    DT  +  NA+VA Y K G   EA+K+LD
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLD 196

Query: 165 AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG-----------YV 213
            MP +++VSWNSM++GY ++G+   A    E  +E D  S NL  D            Y 
Sbjct: 197 QMPYRDVVSWNSMVAGYAQSGQFDDA---LEICKEMD--SLNLNHDAGTMASLSPVVCYT 251

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP----IRNVVAWNA 269
            L+++      F+++ ++N++SW  M++ Y  N    EA  LF QM       + V   +
Sbjct: 252 SLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIAS 311

Query: 270 MIAAYVQRGQIEEAARL--FIEMPERNP--VSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           ++ A      +    RL  +IE     P  +    ++D Y +   L+EAR + D+M  ++
Sbjct: 312 LLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRD 371

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKI----GTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
           + + T+M+S Y ++ +  +A  +F K+       D + +  ++   +  G +D+  + FR
Sbjct: 372 VVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFR 431

Query: 382 QMVNK-----DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
            M  +      I  +  M+  + +  ++++A    ++M    N   W AL+S 
Sbjct: 432 MMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSA 484



 Score =  115 bits (289), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 161/325 (49%), Gaps = 29/325 (8%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           N    N++++ Y K G + +ARK+ +QMP R++VSWNSM+AGY  + +  +A E+  +M 
Sbjct: 171 NLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMD 230

Query: 104 ---FRPDLFSWALM--ITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNE 158
                 D  + A +  + CYT    ++    +F+ +  K++   WN M+A Y      NE
Sbjct: 231 SLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERM-TKKNLISWNVMIAIYVNNSMPNE 289

Query: 159 AKKLLDAMPS----KNIVSWNSMLSGYTKNGEMHLASKFFEAMEE----RDVVSWNLMLD 210
           A  L   M       + V+  S+L        + L  +  + +E+     +++  N +LD
Sbjct: 290 AVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLD 349

Query: 211 GYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM------PIRNV 264
            Y +   L+ A   F K+  ++VVSW +M+S Y R+G+  +A  LF +M      P  + 
Sbjct: 350 MYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNP--DS 407

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-----SWTTMIDGYVRIAKLDEARRLLD 319
           +A+ ++++A    G +++    F  M E+  +      +  M+D + R  +++EA   + 
Sbjct: 408 IAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIK 467

Query: 320 QMPYK-NIAAQTAMISGYVQNKRMD 343
           QMP + N     A++S    + +MD
Sbjct: 468 QMPMEPNERVWGALLSACRVHSKMD 492



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 141/313 (45%), Gaps = 54/313 (17%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDA--------- 65
           +F  N  +   GK G + EA K+  QM  ++ V++NSM++ YA++G+ +DA         
Sbjct: 172 LFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDS 231

Query: 66  ----------------------------RKLFEQMPQRNLVSWNSMIAGYLHNDKVKEAR 97
                                         +FE+M ++NL+SWN MIA Y++N    EA 
Sbjct: 232 LNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAV 291

Query: 98  ELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGY 150
            LF +M     +PD  + A ++        L   R L   +     + +    NA++  Y
Sbjct: 292 SLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMY 351

Query: 151 AKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSWN 206
           AK G   EA+ + D M  +++VSW SM+S Y ++G+ + A   F  M    +  D +++ 
Sbjct: 352 AKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFV 411

Query: 207 LMLDGYVELDDLDSAWKFFQKIPEQ-----NVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
            +L        LD    +F+ + EQ      +  +  M+  + R G + EA     QMP+
Sbjct: 412 SVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPM 471

Query: 262 R-NVVAWNAMIAA 273
             N   W A+++A
Sbjct: 472 EPNERVWGALLSA 484



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 9/150 (6%)

Query: 9   GNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKL 68
           GN    +  +N  +    K G +EEA  +F +M  ++ V++ SM+SAY ++G+  DA  L
Sbjct: 335 GNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVAL 394

Query: 69  FEQM----PQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYT 119
           F +M       + +++ S+++   H   + + R  F  M       P +  +A M+  + 
Sbjct: 395 FAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFG 454

Query: 120 RKGELEKARELFDLLPNKEDTACWNAMVAG 149
           R GE+E+A      +P + +   W A+++ 
Sbjct: 455 RAGEVEEAYSFIKQMPMEPNERVWGALLSA 484


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 247/849 (29%), Positives = 386/849 (45%), Gaps = 165/849 (19%)

Query: 36   KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ--RNLVSWNSMIAGYL-HNDK 92
            +I +     +    N++I+ YAK G ++ ARKLF+  P   R+LV+WN++++    H DK
Sbjct: 681  RILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADK 740

Query: 93   VKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTAC---------W 143
              +   LF ++ R  + S     T +T     +    L    P+  ++           W
Sbjct: 741  SHDGFHLF-RLLRRSVVS----TTRHTLAPVFKMC--LLSASPSASESLHGYAVKIGLQW 793

Query: 144  NAMVAG-----YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN----------GEMH 188
            +  VAG     YAK G   EA+ L D M  +++V WN M+  Y              E H
Sbjct: 794  DVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFH 853

Query: 189  ------------------------LASKFFEAMEER---------DVVSWNLMLDGYVEL 215
                                    L  K F+A   +         DV+ WN  L  +++ 
Sbjct: 854  RTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATKLFMYDDDGSDVIVWNKALSRFLQR 913

Query: 216  DDLDSAWKFFQKIPEQNV----VSWVTMLSGYA-----RNGRMLEA---RRLFDQMPIRN 263
             +   A   F  +    V    +++V ML+  A       G+ +     R   DQ+    
Sbjct: 914  GEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQV---- 969

Query: 264  VVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR-------- 315
            V   N +I  YV+ G +  A  +F +M E + +SW TMI G   ++ L+E          
Sbjct: 970  VSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISG-CTLSGLEECSVGMFVHLL 1028

Query: 316  ---RLLDQMPYKNI-------------AAQ-----------------TAMISGYVQNKRM 342
                L DQ    ++             A Q                 TA+I  Y +  +M
Sbjct: 1029 RDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKM 1088

Query: 343  DEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLF---------------------- 380
            +EA  +F      D+  WN ++ GY   G   +A+ L+                      
Sbjct: 1089 EEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAA 1148

Query: 381  -----------------RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
                             ++  N D+   + ++  Y +  +M+ A ++F E+    + V+W
Sbjct: 1149 GGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEI-PSPDDVAW 1207

Query: 424  NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
              +ISG ++N     AL  +  M     + D  T A  + AC+ L AL+ GRQIH   +K
Sbjct: 1208 TTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVK 1267

Query: 484  SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
                 D FV  SL+ MYAKCG I++A  LFK  +   + SWN++I G A +GNA EA++ 
Sbjct: 1268 LNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQF 1327

Query: 544  FEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLS 603
            F+ M   GV PD VTFIGVLSACSH GLV    + F  M + Y IEP +EHY+C++D LS
Sbjct: 1328 FKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALS 1387

Query: 604  RAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYAL 663
            RAGR++EA +++  M  + +A ++ TLL ACR+  + + G+   EKL  LEP  ++ Y L
Sbjct: 1388 RAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVL 1447

Query: 664  LSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNT 723
            LSN++A A +W+ V   R  M     +K PG SW+++KN++H F++GD     T  I N 
Sbjct: 1448 LSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNK 1507

Query: 724  LKTLAAQIR 732
            ++ +  +IR
Sbjct: 1508 VEYIMKRIR 1516



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 174/760 (22%), Positives = 318/760 (41%), Gaps = 152/760 (20%)

Query: 68   LFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKA 127
            L   +PQ   +   ++ A  L   K   AR +      PD F    +IT Y + G L  A
Sbjct: 652  LIHSLPQCFSILRQAIAASDLSLGKRAHAR-ILTSGHHPDRFVTNNLITMYAKCGSLSSA 710

Query: 128  RELFDLLPN-KEDTACWNAMVAGYAKIGNYNE-------------------------AKK 161
            R+LFD  P+   D   WNA+++  A   + +                             
Sbjct: 711  RKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMC 770

Query: 162  LLDAMPS----------KNIVSWNSMLSG-----YTKNGEMHLASKFFEAMEERDVVSWN 206
            LL A PS          K  + W+  ++G     Y K G +  A   F+ M  RDVV WN
Sbjct: 771  LLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWN 830

Query: 207  LMLDGYVELDDLDSAWKFFQKI------PEQNVVSWVTMLSGYARNGRMLEARR------ 254
            +M+  YV+      A   F +       P+   +  ++ +    +N  +LE ++      
Sbjct: 831  VMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKN--ILELKQFKAYAT 888

Query: 255  ---LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVR 307
               ++D     +V+ WN  ++ ++QRG+  EA   F++M       + +++  M+     
Sbjct: 889  KLFMYDD-DGSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAG 947

Query: 308  IAKLDEARRL--------LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
            +  L+  +++        LDQ+    ++    +I+ YV+   +  A  +F ++   D++ 
Sbjct: 948  LNCLELGKQIHGIVMRSGLDQV----VSVGNCLINMYVKAGSVSRARSVFGQMNEVDLIS 1003

Query: 360  WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIA-----------GYAQIRQMDDA- 407
            WN MI G    G  + ++ +F  ++   ++     +A           GY    Q+    
Sbjct: 1004 WNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACA 1063

Query: 408  ---------------VKIFEEMGKRR------------NTVSWNALISGFLQNEFHLDAL 440
                           + ++ + GK              +  SWNA++ G++ +     AL
Sbjct: 1064 MKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKAL 1123

Query: 441  KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500
            ++++LM + G+++D  TL  A  A   L  L+ G+QIH + +K G+  DLFV + ++ MY
Sbjct: 1124 RLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMY 1183

Query: 501  AKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
             KCG +++A  +F +    D ++W ++I+G   NG    A+  + +M +  V PD  TF 
Sbjct: 1184 LKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFA 1243

Query: 561  GVLSACSHVGLVDGGLKL------FECMTEVYAIEPLVEHYA------------------ 596
             ++ ACS +  ++ G ++        C  + + +  LV+ YA                  
Sbjct: 1244 TLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTR 1303

Query: 597  ------CMIDLLSRAGRLDEAFEMVKGMK---IKPNAGIWGTLLGACRMHQNIKLGR--- 644
                   MI  L++ G   EA +  K MK   + P+   +  +L AC     +       
Sbjct: 1304 RIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENF 1363

Query: 645  IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSM 684
             +++K   +EP+    Y+ L +  + AGR +E EKV  SM
Sbjct: 1364 YSMQKNYGIEPE-IEHYSCLVDALSRAGRIEEAEKVISSM 1402



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 95/426 (22%), Positives = 189/426 (44%), Gaps = 43/426 (10%)

Query: 27   KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
            K+G V  A  +F QM++ + +++N+MIS    +G    +  +F  + + +L+     +A 
Sbjct: 982  KAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVAS 1041

Query: 87   YLHNDKVKEARELFDKMFRP---------DLFSWALMITCYTRKGELEKARELFDLLPNK 137
             L      E                    D F    +I  Y+++G++E+A  LF +  + 
Sbjct: 1042 VLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLF-VNQDG 1100

Query: 138  EDTACWNAMVAGYAKIGNYNEAKKLL----------DAMPSKNIVSWNSMLSGYTKNGEM 187
             D A WNA++ GY   G++ +A +L           D +   N       L G  +  ++
Sbjct: 1101 FDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQI 1160

Query: 188  H--LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR 245
            H  +  + F      D+   + +LD Y++  +++SA + F +IP  + V+W TM+SG   
Sbjct: 1161 HAVVVKRGFNL----DLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVE 1216

Query: 246  NGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERN----PVS 297
            NG+   A   + QM +  V      +  ++ A      +E+  ++   + + N    P  
Sbjct: 1217 NGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFV 1276

Query: 298  WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH-- 355
             T+++D Y +   +++AR L  +   + IA+  AMI G  Q+    EA Q F  + +   
Sbjct: 1277 MTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGV 1336

Query: 356  --DVVCWNVMIKGYAQCGRMDEAINLFRQM-----VNKDIVTWNTMIAGYAQIRQMDDAV 408
              D V +  ++   +  G + EA   F  M     +  +I  ++ ++   ++  ++++A 
Sbjct: 1337 MPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAE 1396

Query: 409  KIFEEM 414
            K+   M
Sbjct: 1397 KVISSM 1402



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 106/247 (42%), Gaps = 39/247 (15%)

Query: 27   KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
            K G +E A ++FS++   + V + +MIS   +NG+   A   + QM    +         
Sbjct: 1185 KCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKV--------- 1235

Query: 87   YLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD---LLPNKEDTACW 143
                              +PD +++A ++   +    LE+ R++      L    D    
Sbjct: 1236 ------------------QPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVM 1277

Query: 144  NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER--- 200
             ++V  YAK GN  +A+ L     ++ I SWN+M+ G  ++G    A +FF+ M+ R   
Sbjct: 1278 TSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVM 1337

Query: 201  -DVVSWNLMLDGYVELDDLDSAWKFFQKIP-----EQNVVSWVTMLSGYARNGRMLEARR 254
             D V++  +L        +  A++ F  +      E  +  +  ++   +R GR+ EA +
Sbjct: 1338 PDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEK 1397

Query: 255  LFDQMPI 261
            +   MP 
Sbjct: 1398 VISSMPF 1404



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/141 (20%), Positives = 68/141 (48%), Gaps = 9/141 (6%)

Query: 16   FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
            F     +    K G +E+A  +F + + +   ++N+MI   A++G   +A + F+ M  R
Sbjct: 1275 FVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSR 1334

Query: 76   NL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEK 126
             +    V++  +++   H+  V EA E F  M       P++  ++ ++   +R G +E+
Sbjct: 1335 GVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEE 1394

Query: 127  ARELFDLLPNKEDTACWNAMV 147
            A ++   +P +   + +  ++
Sbjct: 1395 AEKVISSMPFEASASMYRTLL 1415


>gi|356551872|ref|XP_003544296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Glycine max]
          Length = 945

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 218/738 (29%), Positives = 368/738 (49%), Gaps = 83/738 (11%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRN----LVSWNSMIAGYLHNDKVKEARELFDKM-- 103
           ++ ++    NG +++A  + + + Q+      +++ +++   +  D +   REL  ++  
Sbjct: 53  DTQLNQLCANGSLSEAVAILDSLAQQGSKVRPITFMNLLQACIDKDCILVGRELHTRIGL 112

Query: 104 -FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKL 162
             + + F    +++ Y + G L++AR++FD +  + +   W+AM+   ++   + E  +L
Sbjct: 113 VRKVNPFVETKLVSMYAKCGHLDEARKVFDEM-RERNLFTWSAMIGACSRDLKWEEVVEL 171

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW-------------NLML 209
              M    ++  + +L    K        KF +    R + S              N +L
Sbjct: 172 FYDMMQHGVLPDDFLLPKVLK-----ACGKFRDIETGRLIHSLVIRGGMCSSLHVNNSIL 226

Query: 210 DGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRN----VV 265
             Y +  ++  A K F+++ E+N VSW  +++GY + G + +A++ FD M        +V
Sbjct: 227 AVYAKCGEMSCAEKIFRRMDERNCVSWNVIITGYCQRGEIEQAQKYFDAMQEEGMEPGLV 286

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPE----RNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
            WN +IA+Y Q G  + A  L  +M       +  +WT+MI G+ +  +++EA  LL  M
Sbjct: 287 TWNILIASYSQLGHCDIAMDLMRKMESFGITPDVYTWTSMISGFTQKGRINEAFDLLRDM 346

Query: 322 -----------------------------PYKNIAAQTAMISG----------YVQNKRM 342
                                           +IA +T+M+            Y +   +
Sbjct: 347 LIVGVEPNSITIASAASACASVKSLSMGSEIHSIAVKTSMVDDILIGNSLIDMYAKGGDL 406

Query: 343 DEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD----IVTWNTMIAGY 398
           + A  IFD +   DV  WN +I GY Q G   +A  LF +M   D    +VTWN MI G+
Sbjct: 407 EAAQSIFDVMLERDVYSWNSIIGGYCQAGFCGKAHELFMKMQESDSPPNVVTWNVMITGF 466

Query: 399 AQIRQMDDAVKIF---EEMGK-RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
            Q    D+A+ +F   E+ GK + N  SWN+LISGFLQN     AL+IF  M       +
Sbjct: 467 MQNGDEDEALNLFLRIEKDGKIKPNVASWNSLISGFLQNRQKDKALQIFRQMQFSNMAPN 526

Query: 455 HSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
             T+   L AC +L A +  ++IH  A +   V++L V N+ I  YAK G I  +  +F 
Sbjct: 527 LVTVLTILPACTNLVAAKKVKEIHCCATRRNLVSELSVSNTFIDSYAKSGNIMYSRKVFD 586

Query: 515 DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574
              P D+ISWNSL++GY ++G +  A+ LF++M  +G+ P  VT   ++SA SH  +VD 
Sbjct: 587 GLSPKDIISWNSLLSGYVLHGCSESALDLFDQMRKDGLHPSRVTLTSIISAYSHAEMVDE 646

Query: 575 GLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGAC 634
           G   F  ++E Y I   +EHY+ M+ LL R+G+L +A E ++ M ++PN+ +W  LL AC
Sbjct: 647 GKHAFSNISEEYQIRLDLEHYSAMVYLLGRSGKLAKALEFIQNMPVEPNSSVWAALLTAC 706

Query: 635 RMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQP- 693
           R+H+N  +   A E + EL+P+      LLS  ++  G+  E +K+   +E     K P 
Sbjct: 707 RIHKNFGMAIFAGEHMLELDPENIITQHLLSQAYSVCGKSWEAQKM-TKLEKEKFVKMPV 765

Query: 694 GCSWIEVKNQIHTFLSGD 711
           G SWIE+ N +HTF+ GD
Sbjct: 766 GQSWIEMNNMVHTFVVGD 783


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 205/692 (29%), Positives = 336/692 (48%), Gaps = 104/692 (15%)

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKN--IVSWNSMLSGYTKNGEMHLASKFFEAMEE---- 199
           +++ Y  +G  + A  LL   P  +  +  WNS++  Y  NG  +     F  M      
Sbjct: 65  LISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWT 124

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRL 255
            D  ++  +     E+  +               +S V     +++ Y+R   + +AR++
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKV 184

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM-------PE---------------- 292
           FD+M + +VV+WN++I +Y + G+ + A  +F  M       P+                
Sbjct: 185 FDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGT 244

Query: 293 -----------------RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG 335
                            +N      ++D Y +   +DEA  +   M  K++ +  AM++G
Sbjct: 245 HSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAG 304

Query: 336 YVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI--- 388
           Y Q  R ++A ++F+K+       DVV W+  I GYAQ G   EA+ + RQM++  I   
Sbjct: 305 YSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPN 364

Query: 389 -VTWNTMIAG------------------------------------------YAQIRQMD 405
            VT  ++++G                                          YA+ +++D
Sbjct: 365 EVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVD 424

Query: 406 DAVKIFEEMG-KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG--KKADHSTLACAL 462
            A  +F+ +  K R+ V+W  +I G+ Q+     AL++   M +E    + +  T++CAL
Sbjct: 425 TARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCAL 484

Query: 463 SACAHLAALQLGRQIHHLAIKSGY-VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521
            ACA LAAL++G+QIH  A+++      LFV N LI MYAKCG I +A L+F +    + 
Sbjct: 485 VACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNE 544

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC 581
           ++W SL+ GY ++G   EA+ +F+EM   G   D VT + VL ACSH G++D G++ F  
Sbjct: 545 VTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNR 604

Query: 582 MTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIK 641
           M  V+ + P  EHYAC++DLL RAGRL+ A  +++ M ++P   +W   L  CR+H  ++
Sbjct: 605 MKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVE 664

Query: 642 LGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVK 701
           LG  A EK++EL       Y LLSN++A AGRW +V ++R  M   G +K+PGCSW+E  
Sbjct: 665 LGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGI 724

Query: 702 NQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
               TF  GD       EI   L     +I++
Sbjct: 725 KGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKD 756



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 166/666 (24%), Positives = 290/666 (43%), Gaps = 120/666 (18%)

Query: 14  YVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP 73
           +VF    +I+ + + G    A+ + +     N    N++++ Y++   ++DARK+F++M 
Sbjct: 132 FVFKACGEISSV-RCGESAHALSLVTGFIS-NVFVGNALVAMYSRCRSLSDARKVFDEMS 189

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKAR 128
             ++VSWNS+I  Y    K K A E+F +M      RPD  +   ++      G     +
Sbjct: 190 VWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGK 249

Query: 129 ELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
           +L       E   +    N +V  YAK G  +EA  +   M  K++VSWN+M++GY++ G
Sbjct: 250 QLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIG 309

Query: 186 EMHLASKFFEAMEER----DVVSWNLMLDGYVE----LDDLDSAWKFFQKIPEQNVVSWV 237
               A + FE M+E     DVV+W+  + GY +     + L    +      + N V+ +
Sbjct: 310 RFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLI 369

Query: 238 TMLSGYARNGRMLEARRLFD---QMPI---------RNVVAWNAMIAAYVQRGQIEEAAR 285
           ++LSG A  G ++  + +     + PI          N+V  N +I  Y +  +++ A  
Sbjct: 370 SVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVI-NQLIDMYAKCKKVDTARA 428

Query: 286 LF--IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ-------TAMIS-- 334
           +F  +   ER+ V+WT MI GY +    ++A  LL +M  ++   +        A+++  
Sbjct: 429 MFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACA 488

Query: 335 --GYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWN 392
               ++  +   A  + ++     +   N +I  YA+CG + +A  +F  M+ K+ VTW 
Sbjct: 489 SLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWT 548

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
           +++ GY      ++A+ IF+EM  RR                               G K
Sbjct: 549 SLMTGYGMHGYGEEALGIFDEM--RR------------------------------IGFK 576

Query: 453 ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512
            D  TL   L AC+H   +  G +                 N + T++      ++   L
Sbjct: 577 LDGVTLLVVLYACSHSGMIDQGMEYF---------------NRMKTVFGVSPGPEHYACL 621

Query: 513 FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572
                 VD++       G A  G    A++L EEM ME   P PV ++  LS C   G V
Sbjct: 622 ------VDLL-------GRA--GRLNAALRLIEEMPME---PPPVVWVAFLSCCRIHGKV 663

Query: 573 DGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV-----KGMKIKPNA--- 624
           + G    E +TE+ +       Y  + +L + AGR  +   +      KG+K +P     
Sbjct: 664 ELGEYAAEKITELASNHD--GSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWV 721

Query: 625 -GIWGT 629
            GI GT
Sbjct: 722 EGIKGT 727



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 118/498 (23%), Positives = 215/498 (43%), Gaps = 84/498 (16%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S VF  N  +    +   + +A K+F +MS  + V++NS+I +YAK G+   A ++F +M
Sbjct: 160 SNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRM 219

Query: 73  PQ----------------------------------------RNLVSWNSMIAGYLHNDK 92
                                                     +N+   N ++  Y     
Sbjct: 220 TNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGM 279

Query: 93  VKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAG 149
           + EA  +F  M   D+ SW  M+  Y++ G  E A  LF+ +     K D   W+A ++G
Sbjct: 280 MDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISG 339

Query: 150 YAKIGNYNEA----KKLLDAMPSKNIVSWNSMLSGYTKNG------EMHL-ASKFFEAM- 197
           YA+ G   EA    +++L +    N V+  S+LSG    G      E+H  A K+   + 
Sbjct: 340 YAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLR 399

Query: 198 -----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIP--EQNVVSWVTMLSGYARNGRML 250
                +E  V+  N ++D Y +   +D+A   F  +   E++VV+W  M+ GY+++G   
Sbjct: 400 KNGHGDENMVI--NQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDAN 457

Query: 251 EARRLFDQM--------PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW---T 299
           +A  L  +M        P    ++   +  A +   +I +    +    ++N V      
Sbjct: 458 KALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSN 517

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD---KIGTH- 355
            +ID Y +   + +AR + D M  KN    T++++GY  +   +EA  IFD   +IG   
Sbjct: 518 CLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKL 577

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQM-----VNKDIVTWNTMIAGYAQIRQMDDAVKI 410
           D V   V++   +  G +D+ +  F +M     V+     +  ++    +  +++ A+++
Sbjct: 578 DGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRL 637

Query: 411 FEEMGKRRNTVSWNALIS 428
            EEM      V W A +S
Sbjct: 638 IEEMPMEPPPVVWVAFLS 655


>gi|255542116|ref|XP_002512122.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549302|gb|EEF50791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 800

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 210/740 (28%), Positives = 361/740 (48%), Gaps = 65/740 (8%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL--- 108
           +I +Y++ G +  ++ +FE     +   W  +I  ++ ++   EA  L++KM    +   
Sbjct: 39  LIESYSQIGCLQSSKLVFETFQNPDSFMWAVLIKCHVWSNFCGEAISLYNKMIYKQIPIS 98

Query: 109 -FSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLD 164
            F ++ ++      G L+   E+   +       D     +++  Y  +G  + AKK+ D
Sbjct: 99  DFIFSSVLRACAGFGNLDVGEEVHGRIIKYGLDVDHVVETSLLGMYGDLGCLSNAKKVFD 158

Query: 165 AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV-VSWNLMLD--------GYVEL 215
            M ++++VSW+S++S Y  NGE     + F  +  +DV +    ML         G++ L
Sbjct: 159 NMTTRDLVSWSSIISCYVDNGESSEGLEMFRLLVSQDVELDSVTMLSIAGACGELGFLRL 218

Query: 216 DDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
                     Q+I  +  ++   +L  Y+R      A R+F  M  R++ +W AMI+ Y 
Sbjct: 219 AKSVHGCIIRQRIETRGPLNDALVLM-YSRCDDFSSAERIFSNMFNRSIASWTAMISCYN 277

Query: 276 QRGQIEEAARLFIEMPE----RNPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIA 327
           +    ++A ++F+EM E     N V+   ++        L E + +    +  +   + +
Sbjct: 278 RSRWFKQALQVFVEMLEFKVAPNAVTIMAVLSSCAGFNLLREGKSVHCYAVKHIDLDDDS 337

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK- 386
              A+I  Y Q  ++    ++   IG  +++ WN++I  YA  G   EA+ +F QM  + 
Sbjct: 338 LGPALIEYYAQFGKLSYCEKVLHTIGKRNIISWNMLISVYASQGLFKEALGIFVQMQRQG 397

Query: 387 -------------------------------------DIVTWNTMIAGYAQIRQMDDAVK 409
                                                D    N++I  Y++   +D A  
Sbjct: 398 QIPDSFSLSSSISACANVGLLWLGHQIHGYAIKRHILDEFVQNSLIDMYSKCGHVDLAYL 457

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           IF+ + + ++ V+WN++I GF Q    L+A+++F  M       +  T   A+ AC+H+ 
Sbjct: 458 IFDRI-QSKSVVAWNSMICGFSQIGNSLEAIRLFDQMYLNCLDMNEVTFLTAIQACSHMG 516

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
            L+ G+ +HH  I  G   DLF+  +LI MYAKCG ++ A  +F       V+SW+++I 
Sbjct: 517 HLEKGKWLHHKLIAYGVKKDLFIDTALIDMYAKCGDLRIAHRVFDSMSERSVVSWSAMIG 576

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE 589
           G  ++G+   AI LF EM+   + P+ +TF+ +LSACSH G V+ G   F  M   + +E
Sbjct: 577 GCGMHGDIDAAISLFAEMIQREMKPNDITFMNILSACSHSGYVEEGKFYFNSMKN-FEVE 635

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649
           P +EH+ACM+DLLSRAG LDEA+ ++  M     A IWG LL  CR+HQ + + R     
Sbjct: 636 PNLEHFACMVDLLSRAGDLDEAYRIINSMPFPAEASIWGALLNGCRIHQRMDMIRNIERD 695

Query: 650 LSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLS 709
           L ++    T  Y LLSN++AE G WD   KVR +M+G G +K PG S IE+  +++ F +
Sbjct: 696 LLDMRTDDTGYYTLLSNIYAEEGNWDVSRKVRSAMKGIGLKKVPGYSTIELDKKVYRFGA 755

Query: 710 GDPKQCRTAEICNTLKTLAA 729
           GD    +  EI   L+   +
Sbjct: 756 GDVSHWQVKEINTFLENFQS 775



 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 126/519 (24%), Positives = 222/519 (42%), Gaps = 116/519 (22%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           + V   S++  Y   G +++A+K+F+ M  R+LVSW+S+I+ Y+ N +  E  E+F  + 
Sbjct: 133 DHVVETSLLGMYGDLGCLSNAKKVFDNMTTRDLVSWSSIISCYVDNGESSEGLEMFRLLV 192

Query: 105 RPDL-FSWALMITCYTRKGE---LEKARELFDLLPNK--EDTACWN-AMVAGYAKIGNYN 157
             D+      M++     GE   L  A+ +   +  +  E     N A+V  Y++  +++
Sbjct: 193 SQDVELDSVTMLSIAGACGELGFLRLAKSVHGCIIRQRIETRGPLNDALVLMYSRCDDFS 252

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV--------------V 203
            A+++   M +++I SW +M+S Y ++     A + F  M E  V               
Sbjct: 253 SAERIFSNMFNRSIASWTAMISCYNRSRWFKQALQVFVEMLEFKVAPNAVTIMAVLSSCA 312

Query: 204 SWNLMLDG---------YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
            +NL+ +G         +++LDD DS                  ++  YA+ G++    +
Sbjct: 313 GFNLLREGKSVHCYAVKHIDLDD-DSLGP--------------ALIEYYAQFGKLSYCEK 357

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS----------------- 297
           +   +  RN+++WN +I+ Y  +G  +EA  +F++M  +  +                  
Sbjct: 358 VLHTIGKRNIISWNMLISVYASQGLFKEALGIFVQMQRQGQIPDSFSLSSSISACANVGL 417

Query: 298 -WT-TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
            W    I GY         R +LD+        Q ++I  Y +   +D A  IFD+I + 
Sbjct: 418 LWLGHQIHGYAI------KRHILDEF------VQNSLIDMYSKCGHVDLAYLIFDRIQSK 465

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQM-------------------------------- 383
            VV WN MI G++Q G   EAI LF QM                                
Sbjct: 466 SVVAWNSMICGFSQIGNSLEAIRLFDQMYLNCLDMNEVTFLTAIQACSHMGHLEKGKWLH 525

Query: 384 -------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
                  V KD+     +I  YA+   +  A ++F+ M + R+ VSW+A+I G   +   
Sbjct: 526 HKLIAYGVKKDLFIDTALIDMYAKCGDLRIAHRVFDSMSE-RSVVSWSAMIGGCGMHGDI 584

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
             A+ +F  M Q   K +  T    LSAC+H   ++ G+
Sbjct: 585 DAAISLFAEMIQREMKPNDITFMNILSACSHSGYVEEGK 623



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 154/334 (46%), Gaps = 31/334 (9%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL- 108
           NS+I  Y+K G V+ A  +F+++  +++V+WNSMI G+       EA  LFD+M+   L 
Sbjct: 440 NSLIDMYSKCGHVDLAYLIFDRIQSKSVVAWNSMICGFSQIGNSLEAIRLFDQMYLNCLD 499

Query: 109 ---FSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL 162
               ++   I   +  G LEK + L   L     K+D     A++  YAK G+   A ++
Sbjct: 500 MNEVTFLTAIQACSHMGHLEKGKWLHHKLIAYGVKKDLFIDTALIDMYAKCGDLRIAHRV 559

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER-----DVVSWNLM----LDGYV 213
            D+M  +++VSW++M+ G   +G++  A   F  M +R     D+   N++      GYV
Sbjct: 560 FDSMSERSVVSWSAMIGGCGMHGDIDAAISLFAEMIQREMKPNDITFMNILSACSHSGYV 619

Query: 214 ELDDLD-SAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI-RNVVAWNAMI 271
           E      ++ K F+  P  N+  +  M+   +R G + EA R+ + MP       W A++
Sbjct: 620 EEGKFYFNSMKNFEVEP--NLEHFACMVDLLSRAGDLDEAYRIINSMPFPAEASIWGALL 677

Query: 272 AA---YVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA 328
                + +   I    R  ++M   +   +T + + Y      D +R++   M  K I  
Sbjct: 678 NGCRIHQRMDMIRNIERDLLDMRTDDTGYYTLLSNIYAEEGNWDVSRKVRSAM--KGIGL 735

Query: 329 QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNV 362
           +   + GY       E ++   + G  DV  W V
Sbjct: 736 KK--VPGY----STIELDKKVYRFGAGDVSHWQV 763



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 118/251 (47%), Gaps = 18/251 (7%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP-- 73
           F QN  I    K G V+ A  IF ++  K+ V +NSMI  +++ G   +A +LF+QM   
Sbjct: 437 FVQNSLIDMYSKCGHVDLAYLIFDRIQSKSVVAWNSMICGFSQIGNSLEAIRLFDQMYLN 496

Query: 74  --QRNLVSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKA 127
               N V++ + I    H   +++ + L  K+     + DLF    +I  Y + G+L  A
Sbjct: 497 CLDMNEVTFLTAIQACSHMGHLEKGKWLHHKLIAYGVKKDLFIDTALIDMYAKCGDLRIA 556

Query: 128 RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSMLSGYTK 183
             +FD +  +     W+AM+ G    G+ + A  L   M  +    N +++ ++LS  + 
Sbjct: 557 HRVFDSMSERS-VVSWSAMIGGCGMHGDIDAAISLFAEMIQREMKPNDITFMNILSACSH 615

Query: 184 NGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-WVT 238
           +G +     +F +M+    E ++  +  M+D      DLD A++    +P     S W  
Sbjct: 616 SGYVEEGKFYFNSMKNFEVEPNLEHFACMVDLLSRAGDLDEAYRIINSMPFPAEASIWGA 675

Query: 239 MLSGYARNGRM 249
           +L+G   + RM
Sbjct: 676 LLNGCRIHQRM 686



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 76/143 (53%), Gaps = 8/143 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F     I    K G +  A ++F  MS+++ V++++MI     +G ++ A  LF +M Q
Sbjct: 537 LFIDTALIDMYAKCGDLRIAHRVFDSMSERSVVSWSAMIGGCGMHGDIDAAISLFAEMIQ 596

Query: 75  R----NLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEK 126
           R    N +++ ++++   H+  V+E +  F+ M      P+L  +A M+   +R G+L++
Sbjct: 597 REMKPNDITFMNILSACSHSGYVEEGKFYFNSMKNFEVEPNLEHFACMVDLLSRAGDLDE 656

Query: 127 ARELFDLLPNKEDTACWNAMVAG 149
           A  + + +P   + + W A++ G
Sbjct: 657 AYRIINSMPFPAEASIWGALLNG 679



 Score = 47.8 bits (112), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 3/112 (2%)

Query: 464 ACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS 523
           +C  L  L L   +H   + +G  +D      LI  Y++ G +Q+++L+F+     D   
Sbjct: 10  SCTSLRPLTL---LHSHLLVTGLHHDPQASTKLIESYSQIGCLQSSKLVFETFQNPDSFM 66

Query: 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
           W  LI  +  +    EAI L+ +M+ + +      F  VL AC+  G +D G
Sbjct: 67  WAVLIKCHVWSNFCGEAISLYNKMIYKQIPISDFIFSSVLRACAGFGNLDVG 118


>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 200/613 (32%), Positives = 328/613 (53%), Gaps = 35/613 (5%)

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           LF + P   +    + +VA Y+K  +   A+ + D +P KN  S+N+ML  Y+ +     
Sbjct: 52  LFSVTP---ENYLASKLVALYSKTNHLAFARYVFDQIPHKNTFSYNAMLISYSLHNRHGD 108

Query: 190 ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRM 249
           A   F ++   ++V+ N+ +        L S   F         +S V +  G   +G +
Sbjct: 109 ALDLFSSLASSNLVN-NISITCL-----LKSLSSF--------TLSDVKL--GKEVHGFV 152

Query: 250 LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIA 309
           L  R  FD     +V   NA+I  Y +   ++ + ++F  M +R+ VSW +MI GY +  
Sbjct: 153 L--RTGFDA----DVFVENALITYYSKCYDLDLSRKVFDRMTKRDVVSWNSMISGYSQGG 206

Query: 310 KLDEARRLLDQM-------PYKNIAAQTAMISGYVQNKR--MDEANQIFDKIGTHDVVCW 360
             ++ + L  +M       P            G  Q+    M+    I D     D+   
Sbjct: 207 LYEDCKTLYREMVDFSGFRPNGVTVVSVLQACGQTQDLAFGMEVHKFIVDNQVEIDISVC 266

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
           N +I  YA+CG +D A  LF +M  KD VT+  +I+G      +D ++++F  M K +  
Sbjct: 267 NALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGLMLHGYVDQSLELFRGM-KTQIL 325

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
            +WNA+I+G +QN  H   L +   M   G + +  TL+  LS  A+ ++L+ G++IH  
Sbjct: 326 STWNAVITGLVQNNRHEGVLDLVREMQALGFRPNAVTLSSVLSTIAYFSSLKGGKEIHSY 385

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEA 540
           AIK GY  +++V  ++I MYAK G ++ A+ +F  +    ++ W ++I+ YA++G+A  A
Sbjct: 386 AIKIGYHRNIYVATAIIDMYAKSGYLRGAQRVFDQSKDRSLVIWTAIISAYAVHGDANLA 445

Query: 541 IKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMID 600
           + LF EM+ +G+ PDPVTF  VL+AC+H G+VD   ++FE M + Y I+PLVEHYAC++ 
Sbjct: 446 LGLFHEMLKQGIQPDPVTFTAVLAACAHCGMVDKAWEIFESMFKKYGIQPLVEHYACVVG 505

Query: 601 LLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSC 660
            L +A RL EA E V  M I+P+A +WG LL    +  +++LG+   + L E+EP+ T  
Sbjct: 506 ALGKARRLSEAKEFVSKMPIEPSAKVWGALLHGASISSDVELGKSVCDYLFEIEPENTGN 565

Query: 661 YALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           Y +++N++++AGRW E ++VR  M   G QK PG SWIE    + +F++ D       EI
Sbjct: 566 YVIMANLYSQAGRWKEADEVRERMNKVGLQKIPGSSWIETSEGLRSFIATDTCTENVEEI 625

Query: 721 CNTLKTLAAQIRN 733
              LK L   +R+
Sbjct: 626 HVILKGLLGLMRD 638



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 121/460 (26%), Positives = 218/460 (47%), Gaps = 36/460 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           +K +    K+  +  A  +F Q+  KNT +YN+M+ +Y+ + R  DA  LF  +   NLV
Sbjct: 63  SKLVALYSKTNHLAFARYVFDQIPHKNTFSYNAMLISYSLHNRHGDALDLFSSLASSNLV 122

Query: 79  SWNSM------IAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAR 128
           +  S+      ++ +  +D VK  +E+   + R     D+F    +IT Y++  +L+ +R
Sbjct: 123 NNISITCLLKSLSSFTLSD-VKLGKEVHGFVLRTGFDADVFVENALITYYSKCYDLDLSR 181

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS-----KNIVSWNSMLSGYTK 183
           ++FD +  K D   WN+M++GY++ G Y + K L   M        N V+  S+L    +
Sbjct: 182 KVFDRM-TKRDVVSWNSMISGYSQGGLYEDCKTLYREMVDFSGFRPNGVTVVSVLQACGQ 240

Query: 184 NGEMHLA---SKFF-EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTM 239
             ++       KF  +   E D+   N ++  Y +   LD A + F ++ E++ V++  +
Sbjct: 241 TQDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAI 300

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNP 295
           +SG   +G + ++  LF  M  + +  WNA+I   VQ  + E    L  EM       N 
Sbjct: 301 ISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVLDLVREMQALGFRPNA 360

Query: 296 VSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK 351
           V+ ++++      + L   + +    +    ++NI   TA+I  Y ++  +  A ++FD+
Sbjct: 361 VTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSGYLRGAQRVFDQ 420

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDA 407
                +V W  +I  YA  G  + A+ LF +M    +  D VT+  ++A  A    +D A
Sbjct: 421 SKDRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPVTFTAVLAACAHCGMVDKA 480

Query: 408 VKIFEEMGKR---RNTVSWNALISGFLQNEFHLDALKIFV 444
            +IFE M K+   +  V   A + G L     L   K FV
Sbjct: 481 WEIFESMFKKYGIQPLVEHYACVVGALGKARRLSEAKEFV 520



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 176/375 (46%), Gaps = 59/375 (15%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----F 104
           N++I+ Y+K   ++ +RK+F++M +R++VSWNSMI+GY      ++ + L+ +M     F
Sbjct: 165 NALITYYSKCYDLDLSRKVFDRMTKRDVVSWNSMISGYSQGGLYEDCKTLYREMVDFSGF 224

Query: 105 RPDLFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKK 161
           RP+  +   ++    +  +L    E+   + + +   D +  NA++  YAK G+ + A++
Sbjct: 225 RPNGVTVVSVLQACGQTQDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYARE 284

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE------- 214
           L D M  K+ V++ +++SG   +G +  + + F  M+ + + +WN ++ G V+       
Sbjct: 285 LFDEMSEKDEVTYGAIISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGV 344

Query: 215 ------------------LDDLDSAWKFFQKIP--------------EQNVVSWVTMLSG 242
                             L  + S   +F  +                +N+     ++  
Sbjct: 345 LDLVREMQALGFRPNAVTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDM 404

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSW 298
           YA++G +  A+R+FDQ   R++V W A+I+AY   G    A  LF EM ++    +PV++
Sbjct: 405 YAKSGYLRGAQRVFDQSKDRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPVTF 464

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ------TAMISGYVQNKRMDEANQIFDKI 352
           T ++        +D+A  + + M +K    Q        ++    + +R+ EA +   K+
Sbjct: 465 TAVLAACAHCGMVDKAWEIFESM-FKKYGIQPLVEHYACVVGALGKARRLSEAKEFVSKM 523

Query: 353 GTH-DVVCWNVMIKG 366
                   W  ++ G
Sbjct: 524 PIEPSAKVWGALLHG 538



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 132/552 (23%), Positives = 250/552 (45%), Gaps = 58/552 (10%)

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDA 165
           P+ +  + ++  Y++   L  AR +FD +P+K +T  +NAM+  Y+    + +A  L  +
Sbjct: 57  PENYLASKLVALYSKTNHLAFARYVFDQIPHK-NTFSYNAMLISYSLHNRHGDALDLFSS 115

Query: 166 MPSKNIVSWNSM------LSGYTKNG-----EMH---LASKFFEAMEERDVVSWNLMLDG 211
           + S N+V+  S+      LS +T +      E+H   L + F     + DV   N ++  
Sbjct: 116 LASSNLVNNISITCLLKSLSSFTLSDVKLGKEVHGFVLRTGF-----DADVFVENALITY 170

Query: 212 YVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
           Y +  DLD + K F ++ +++VVSW +M+SGY++ G   + + L+ +M   +    N + 
Sbjct: 171 YSKCYDLDLSRKVFDRMTKRDVVSWNSMISGYSQGGLYEDCKTLYREMVDFSGFRPNGVT 230

Query: 272 AAYVQR--GQIEEAA------RLFIEMPERNPVSWTTMIDG-YVRIAKLDEARRLLDQMP 322
              V +  GQ ++ A      +  ++      +S    + G Y +   LD AR L D+M 
Sbjct: 231 VVSVLQACGQTQDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYARELFDEMS 290

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
            K+     A+ISG + +  +D++ ++F  + T  +  WN +I G  Q  R +  ++L R+
Sbjct: 291 EKDEVTYGAIISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVLDLVRE 350

Query: 383 M----VNKDIVTWNTMIAGYAQIRQMDDAVKIFE---EMGKRRNTVSWNALISGFLQNEF 435
           M       + VT +++++  A    +    +I     ++G  RN     A+I  + ++ +
Sbjct: 351 MQALGFRPNAVTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSGY 410

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS 495
              A ++F     + K          +SA A      L   + H  +K G   D     +
Sbjct: 411 LRGAQRVF----DQSKDRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPVTFTA 466

Query: 496 LITMYAKCGRIQNA----ELLFKDADPVDVISWNSLIAGYAINGNA---TEAIKLFEEMV 548
           ++   A CG +  A    E +FK      ++   + + G    G A   +EA +   +M 
Sbjct: 467 VLAACAHCGMVDKAWEIFESMFKKYGIQPLVEHYACVVGAL--GKARRLSEAKEFVSKMP 524

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE-VYAIEPL-VEHYACMIDLLSRAG 606
           +E  A        V  A  H   +   ++L + + + ++ IEP    +Y  M +L S+AG
Sbjct: 525 IEPSAK-------VWGALLHGASISSDVELGKSVCDYLFEIEPENTGNYVIMANLYSQAG 577

Query: 607 RLDEAFEMVKGM 618
           R  EA E+ + M
Sbjct: 578 RWKEADEVRERM 589



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 151/323 (46%), Gaps = 20/323 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I    K G ++ A ++F +MS+K+ VTY ++IS    +G V+ + +LF  M  + L 
Sbjct: 267 NALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGLMLHGYVDQSLELFRGMKTQILS 326

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDL- 133
           +WN++I G + N++ +   +L  +M    FRP+  + + +++       L+  +E+    
Sbjct: 327 TWNAVITGLVQNNRHEGVLDLVREMQALGFRPNAVTLSSVLSTIAYFSSLKGGKEIHSYA 386

Query: 134 --LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
             +    +     A++  YAK G    A+++ D    +++V W +++S Y  +G+ +LA 
Sbjct: 387 IKIGYHRNIYVATAIIDMYAKSGYLRGAQRVFDQSKDRSLVIWTAIISAYAVHGDANLAL 446

Query: 192 KFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQN-----VVSWVTMLSG 242
             F  M ++    D V++  +L        +D AW+ F+ + ++      V  +  ++  
Sbjct: 447 GLFHEMLKQGIQPDPVTFTAVLAACAHCGMVDKAWEIFESMFKKYGIQPLVEHYACVVGA 506

Query: 243 YARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIE---EAARLFIEMPERNPVSW 298
             +  R+ EA+    +MPI  +   W A++        +E          E+   N  ++
Sbjct: 507 LGKARRLSEAKEFVSKMPIEPSAKVWGALLHGASISSDVELGKSVCDYLFEIEPENTGNY 566

Query: 299 TTMIDGYVRIAKLDEARRLLDQM 321
             M + Y +  +  EA  + ++M
Sbjct: 567 VIMANLYSQAGRWKEADEVRERM 589


>gi|354805159|gb|AER41579.1| CRR4 [Oryza brachyantha]
          Length = 626

 Score =  327 bits (838), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 170/459 (37%), Positives = 269/459 (58%), Gaps = 3/459 (0%)

Query: 278 GQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYV 337
           G++  A ++F EM +R+ VSW ++I  Y+       A  L + MP +N+ +   +++G+ 
Sbjct: 157 GRVAAARQVFDEMVDRDVVSWNSIIGVYMSSGDYTGAMELFEAMPERNVVSWNTLVAGFA 216

Query: 338 QNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIA 396
           +   M  A  +FD++ + + + WN+MI GYA  G ++ A ++F +M   KD+V+W  M++
Sbjct: 217 RVGDMVTAQTVFDRMPSRNAISWNLMISGYASSGDVEAARSMFDRMDQKKDVVSWTAMVS 276

Query: 397 GYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK-KADH 455
            YA+I  +D A ++F+ M   +N VSWNA+I+G+  N  + +AL+ F LM  EG+ + D 
Sbjct: 277 AYAKIGDLDTAKELFDHM-PLKNLVSWNAMITGYNHNSRYGEALRTFQLMMLEGRFRPDE 335

Query: 456 STLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD 515
           +TL   +SACA L +++    I     KS     + +GN+LI M+AKCG +  A+ +F +
Sbjct: 336 ATLVSVVSACAQLGSVEYCNWISSFIRKSNVHLTIALGNALIDMFAKCGDVGRAQSIFYE 395

Query: 516 ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
                +I+W ++I+G+A NG   EA+ ++  M  EGV  D + FI  L+AC H GL+  G
Sbjct: 396 MKTRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDDMVFIAALAACVHGGLLQEG 455

Query: 576 LKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACR 635
             +F  M E Y I+P +EHY C++DLL RAG L EA   ++ M ++P+  IW TLL +C 
Sbjct: 456 WSIFNEMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAVLFIESMPLEPSVVIWATLLSSCV 515

Query: 636 MHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGC 695
            H N +      +K++ELEP  +S   L+SN  A  GRWD V   R  M   G +K PG 
Sbjct: 516 AHGNAEFIDYVSKKITELEPFNSSYQVLVSNSSALEGRWDGVIGARTIMRNWGIEKVPGS 575

Query: 696 SWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNT 734
           S I+V +++H FL+ D    R  EI  T+  L A +R+T
Sbjct: 576 SSIQVGSEVHEFLAKDTMHERRKEIYETVDGLMALMRHT 614



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/394 (30%), Positives = 200/394 (50%), Gaps = 53/394 (13%)

Query: 12  GSYVFNQNKKIT---QLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKL 68
           GS VF QN  +    + G  GRV  A ++F +M  ++ V++NS+I  Y  +G    A +L
Sbjct: 137 GSEVFVQNTLLDVYYRCGGPGRVAAARQVFDEMVDRDVVSWNSIIGVYMSSGDYTGAMEL 196

Query: 69  FEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAR 128
           FE MP+RN+VSWN+++AG+     +  A+ +FD+M   +  SW LMI+ Y   G++E AR
Sbjct: 197 FEAMPERNVVSWNTLVAGFARVGDMVTAQTVFDRMPSRNAISWNLMISGYASSGDVEAAR 256

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
            +FD +  K+D   W AMV+ YAKIG+ + AK+L D MP KN+VSWN+M++GY  N    
Sbjct: 257 SMFDRMDQKKDVVSWTAMVSAYAKIGDLDTAKELFDHMPLKNLVSWNAMITGYNHNSRYG 316

Query: 189 LASKFFEAM--------EERDVVS---------------W-----------------NLM 208
            A + F+ M        +E  +VS               W                 N +
Sbjct: 317 EALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIRKSNVHLTIALGNAL 376

Query: 209 LDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV---- 264
           +D + +  D+  A   F ++  + +++W TM+SG+A NG   EA  +++ M    V    
Sbjct: 377 IDMFAKCGDVGRAQSIFYEMKTRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDD 436

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMIDGYVRIAKLDEARRLLD 319
           + + A +AA V  G ++E   +F EM E+  +      +  ++D   R   L EA   ++
Sbjct: 437 MVFIAALAACVHGGLLQEGWSIFNEMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAVLFIE 496

Query: 320 QMPYK-NIAAQTAMISGYVQNKRMDEANQIFDKI 352
            MP + ++     ++S  V +   +  + +  KI
Sbjct: 497 SMPLEPSVVIWATLLSSCVAHGNAEFIDYVSKKI 530



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 104/222 (46%), Gaps = 16/222 (7%)

Query: 419 NTVSWNALISGFLQNEFH----LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
           ++VS N LI        H     DAL  +  M   G   +  T    L ACA L   +  
Sbjct: 65  SSVSHNTLIERLAGARGHRPVPADALAAYTAMLAAGVPPNGFTFTFLLRACALLGFPRPC 124

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKC---GRIQNAELLFKDADPVDVISWNSLIAGY 531
           R +H   ++ G+ +++FV N+L+ +Y +C   GR+  A  +F +    DV+SWNS+I  Y
Sbjct: 125 RCVHGQIVRWGFGSEVFVQNTLLDVYYRCGGPGRVAAARQVFDEMVDRDVVSWNSIIGVY 184

Query: 532 AINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL 591
             +G+ T A++LFE M    V    V++  +++  + VG +     +F+ M    AI   
Sbjct: 185 MSSGDYTGAMELFEAMPERNV----VSWNTLVAGFARVGDMVTAQTVFDRMPSRNAIS-- 238

Query: 592 VEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
              +  MI   + +G ++ A  M   M  K +   W  ++ A
Sbjct: 239 ---WNLMISGYASSGDVEAARSMFDRMDQKKDVVSWTAMVSA 277


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  327 bits (838), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 181/556 (32%), Positives = 297/556 (53%), Gaps = 50/556 (8%)

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP----IRNVVAWNA 269
             D L  A   F  I E  ++ W TM  G+A +   + A +L+  M     + N   +  
Sbjct: 49  HFDGLPYAISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPF 108

Query: 270 MIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
           ++ +  +    +E  +L  ++     + +    T++I  YV+  +L++A+++ D+  +++
Sbjct: 109 LLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRD 168

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-- 383
           + + TA+I+GY     ++ A+++FD+I   DVV WN  I GYA+ G   EA+ LF++M  
Sbjct: 169 VVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMK 228

Query: 384 ------------------------VNKDIVTW-------------NTMIAGYAQIRQMDD 406
                                   + + + +W             N +I  Y++  +++ 
Sbjct: 229 TNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELET 288

Query: 407 AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466
           A  +F+ +  + + +SWN LI G+     + +AL +F  M + G+K +  T+   LSACA
Sbjct: 289 ACGLFQGLSNK-DVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACA 347

Query: 467 HLAALQLGRQIHHLAIK--SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISW 524
           HL A+ +GR IH    K   G  N   +  SLI MYAKCG I+ A+ +F       + SW
Sbjct: 348 HLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSW 407

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           N++I G+A++G A  A  +F  M   G+ PD +TF+G+LSACSH G++D G  +F  MT 
Sbjct: 408 NAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTR 467

Query: 585 VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
            Y + P +EHY CMIDL   +G   EA +M+  M+++P+  IW +LL AC+MH N++LG 
Sbjct: 468 DYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGE 527

Query: 645 IAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQI 704
              + L ++EP+    Y LLSN++A A RW+EV K R  +   G +K PGCS IE+ + +
Sbjct: 528 SYAQNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVV 587

Query: 705 HTFLSGDPKQCRTAEI 720
           H F+ GD    R  EI
Sbjct: 588 HEFIIGDKFHPRNREI 603



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 131/510 (25%), Positives = 202/510 (39%), Gaps = 98/510 (19%)

Query: 89  HNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF------DLLPNKEDTAC 142
           H D +  A  +FD +  P L  W  M   +    +   A +L+       LLPN   +  
Sbjct: 49  HFDGLPYAISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPN---SYT 105

Query: 143 WNAMVAGYAKIGNYNEAKKL----LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           +  ++   AK   + E ++L    L      ++    S++S Y +NG +  A K  +   
Sbjct: 106 FPFLLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSS 165

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
            RDVVS+  ++ GY     ++SA K F +IP ++VVSW   +SGYA  G   EA  LF +
Sbjct: 166 HRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKK 225

Query: 259 M------PI--------------------RNVVAW-------------NAMIAAYVQRGQ 279
           M      P                     R V +W             NA+I  Y + G+
Sbjct: 226 MMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGE 285

Query: 280 IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM----PYKNIAAQTAMISG 335
           +E A  LF  +  ++ +SW T+I GY  +    EA  L   M       N     +++S 
Sbjct: 286 LETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSA 345

Query: 336 YVQNKRMDEANQIFDKIG------THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIV 389
                 +D    I   I       T+       +I  YA+CG ++ A  +F  M+N+ + 
Sbjct: 346 CAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLS 405

Query: 390 TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
           +WN MI G+A              M  R N                   A  IF  M + 
Sbjct: 406 SWNAMIFGFA--------------MHGRANA------------------AFDIFSRMRKN 433

Query: 450 GKKADHSTLACALSACAHLAALQLGRQIHHLAIKS-GYVNDLFVGNSLITMYAKCGRIQN 508
           G + D  T    LSAC+H   L LGR I     +    +  L     +I +    G  + 
Sbjct: 434 GIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKE 493

Query: 509 AELLFK--DADPVDVISWNSLIAGYAINGN 536
           AE +    + +P  VI W SL+    ++GN
Sbjct: 494 AEKMINTMEMEPDGVI-WCSLLKACKMHGN 522



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 159/321 (49%), Gaps = 21/321 (6%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           I+   ++GR+E+A K+  + S ++ V+Y ++I+ YA  G +  A K+F+++P +++VSWN
Sbjct: 145 ISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWN 204

Query: 82  SMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
           + I+GY      KEA ELF KM     RPD  +   +++   + G +E  R++   + + 
Sbjct: 205 AXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDH 264

Query: 138 ---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
               +    NA++  Y+K G    A  L   + +K+++SWN+++ GYT       A   F
Sbjct: 265 GFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLF 324

Query: 195 EAM----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ-----NVVSWVT-MLSGYA 244
           + M    E+ + V+   +L     L  +D        I ++     N  S  T ++  YA
Sbjct: 325 QDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYA 384

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTT 300
           + G +  A+++FD M  R++ +WNAMI  +   G+   A  +F  M     E + +++  
Sbjct: 385 KCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVG 444

Query: 301 MIDGYVRIAKLDEARRLLDQM 321
           ++        LD  R +   M
Sbjct: 445 LLSACSHSGMLDLGRHIFRSM 465



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 109/470 (23%), Positives = 204/470 (43%), Gaps = 87/470 (18%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVS-------------- 79
           AI +F  + +   + +N+M   +A +     A KL+  M    L+               
Sbjct: 56  AISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAK 115

Query: 80  -------------------------WNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALM 114
                                      S+I+ Y+ N ++++A+++ DK    D+ S+  +
Sbjct: 116 SXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTAL 175

Query: 115 ITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI--- 171
           IT Y  +G +E A ++FD +P K D   WNA ++GYA+ GNY EA +L   M   N+   
Sbjct: 176 ITGYASRGXIESAHKMFDEIPVK-DVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPD 234

Query: 172 -VSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW-------------NLMLDGYVELDD 217
             +  ++LS   ++G + L          R V SW             N ++D Y +  +
Sbjct: 235 ESTMVTVLSACAQSGSIELG---------RQVHSWINDHGFGXNLKIVNALIDLYSKCGE 285

Query: 218 LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-----NVVAWNAMIA 272
           L++A   FQ +  ++V+SW T++ GY       EA  LF  M +R     N V   ++++
Sbjct: 286 LETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDM-LRSGEKPNDVTMLSILS 344

Query: 273 AYVQRGQIEEAARLFIEMPER-----NPVSW-TTMIDGYVRIAKLDEARRLLDQMPYKNI 326
           A    G I+    + + + +R     N  S  T++ID Y +   ++ A+++ D M  +++
Sbjct: 345 ACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSL 404

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQ 382
           ++  AMI G+  + R + A  IF ++  +    D + +  ++   +  G +D   ++FR 
Sbjct: 405 SSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRS 464

Query: 383 MVN-----KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
           M         +  +  MI          +A K+   M    + V W +L+
Sbjct: 465 MTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLL 514


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  327 bits (838), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 193/594 (32%), Positives = 324/594 (54%), Gaps = 20/594 (3%)

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDD 217
            A+ +L  + ++ +V+   +LS   + G++  A   F+ + + +   +N ++ GY   +D
Sbjct: 59  HAQIILHGLAAQ-VVTLGKLLSLCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSND 117

Query: 218 LDSAWKFFQKI----PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-----NVVAWN 268
              +   F+++    P  N  ++  +L   A      EA  +  Q  I+     +    N
Sbjct: 118 PMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQ-AIKLGMGPHACVQN 176

Query: 269 AMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA 328
           A++ AYV    I  A ++F ++ +R  VSW +MI GY ++   DEA  L  +M    + A
Sbjct: 177 AILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEA 236

Query: 329 QT----AMISGYVQNKRMDEANQIFDKI---GTH-DVVCWNVMIKGYAQCGRMDEAINLF 380
                 +++S   ++  +D    +   I   G   D +  N +I  YA+CG +  A ++F
Sbjct: 237 DVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVF 296

Query: 381 RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
            QM++KD+V+W +M+  YA    +++AV+IF  M   +N VSWN++I   +Q   + +A+
Sbjct: 297 DQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHM-PVKNVVSWNSIICCLVQEGQYTEAV 355

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500
           ++F  M   G   D +TL   LS C++   L LG+Q H     +     + + NSLI MY
Sbjct: 356 ELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMY 415

Query: 501 AKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
           AKCG +Q A  +F      +V+SWN +I   A++G   EAI++F+ M   G+ PD +TF 
Sbjct: 416 AKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFT 475

Query: 561 GVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKI 620
           G+LSACSH GLVD G   F+ M   + I P VEHYACM+DLL R G L EA  +++ M +
Sbjct: 476 GLLSACSHSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPV 535

Query: 621 KPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKV 680
           KP+  +WG LLGACR++ N+++ +  +++L EL    +  Y LLSNM++E+ RWD+++K+
Sbjct: 536 KPDVVVWGALLGACRIYGNLEIAKQIMKQLLELGRFNSGLYVLLSNMYSESQRWDDMKKI 595

Query: 681 RVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNT 734
           R  M+ SG +K    S+IE+    + F+  D + C +  I + L  L   +++ 
Sbjct: 596 RKIMDDSGIKKCRAISFIEIDGCCYQFMVDDKRHCASTGIYSILDQLMDHLKSV 649



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 137/561 (24%), Positives = 240/561 (42%), Gaps = 117/561 (20%)

Query: 46  TVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR 105
            VT   ++S   + G +  A  LF+Q+PQ N   +N +I GY +++   ++  LF +M  
Sbjct: 71  VVTLGKLLSLCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVS 130

Query: 106 ----PDLFSWAL-----------------------------------MITCYTRKGELEK 126
               P+ F++                                     ++T Y     +  
Sbjct: 131 AGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPHACVQNAILTAYVACRLILS 190

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM----PSKNIVSWNSMLSGYT 182
           AR++FD + ++   + WN+M+AGY+K+G  +EA  L   M       ++ +  S+LS  +
Sbjct: 191 ARQVFDDISDRTIVS-WNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASS 249

Query: 183 KNGEMHLASKFFEAM-----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV 237
           K+  + L  +F          E D +  N ++D Y +   L  A   F ++ +++VVSW 
Sbjct: 250 KHCNLDLG-RFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWT 308

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
           +M++ YA  G +  A ++F+ MP++NVV+WN++I   VQ GQ  EA  LF  M       
Sbjct: 309 SMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRM------- 361

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQ----IFDKIG 353
               I G                MP  + A   +++S       +    Q    I D I 
Sbjct: 362 ---CISGV---------------MP--DDATLVSILSCCSNTGDLALGKQAHCYICDNII 401

Query: 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEE 413
           T  V   N +I  YA+CG +  AI++F  M  K++V+WN +I   A              
Sbjct: 402 TVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALA-------------- 447

Query: 414 MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQL 473
                        + GF +     +A+++F  M   G   D  T    LSAC+H   + +
Sbjct: 448 -------------LHGFGE-----EAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDM 489

Query: 474 GRQIHHLAIKSGYVNDLFVGNS-LITMYAKCGRIQNAELLFKDADPV--DVISWNSLIAG 530
           GR    + I +  ++      + ++ +  + G +  A  L +   PV  DV+ W +L+  
Sbjct: 490 GRYYFDIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKM-PVKPDVVVWGALLGA 548

Query: 531 YAINGNATEAIKLFEEMVMEG 551
             I GN   A ++ ++++  G
Sbjct: 549 CRIYGNLEIAKQIMKQLLELG 569



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/434 (26%), Positives = 202/434 (46%), Gaps = 35/434 (8%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR---- 105
           N++++AY     +  AR++F+ +  R +VSWNSMIAGY       EA  LF +M +    
Sbjct: 176 NAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVE 235

Query: 106 PDLFSWALMITCYTRKGELEKAR--ELFDLLPNKE-DTACWNAMVAGYAKIGNYNEAKKL 162
            D+F+   +++  ++   L+  R   L+ ++   E D+   NA++  YAK G+   AK +
Sbjct: 236 ADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHV 295

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAW 222
            D M  K++VSW SM++ Y   G +  A + F  M  ++VVSWN ++   V+      A 
Sbjct: 296 FDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAV 355

Query: 223 KFFQKIPEQNVV----SWVTMLSGYARNGRMLEARR----LFDQMPIRNVVAWNAMIAAY 274
           + F ++    V+    + V++LS  +  G +   ++    + D +   +V   N++I  Y
Sbjct: 356 ELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMY 415

Query: 275 VQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP----YKNIAAQT 330
            + G ++ A  +F  MPE+N VSW  +I         +EA  +   M     Y +    T
Sbjct: 416 AKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFT 475

Query: 331 AMISGYVQNKRMDEANQIFDKI--------GTHDVVCWNVMIKGYAQCGRMDEAINLFRQ 382
            ++S    +  +D     FD +        G     C   M+    + G + EA+ L ++
Sbjct: 476 GLLSACSHSGLVDMGRYYFDIMISTFRISPGVEHYAC---MVDLLGRGGFLGEAMTLIQK 532

Query: 383 M-VNKDIVTWNTMIAG---YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
           M V  D+V W  ++     Y  +      +K   E+G R N+  +  L + + +++   D
Sbjct: 533 MPVKPDVVVWGALLGACRIYGNLEIAKQIMKQLLELG-RFNSGLYVLLSNMYSESQRWDD 591

Query: 439 ALKIFVLMTQEGKK 452
             KI  +M   G K
Sbjct: 592 MKKIRKIMDDSGIK 605



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 154/320 (48%), Gaps = 22/320 (6%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I    K G ++ A  +F QM  K+ V++ SM++AYA  G V +A ++F  MP +N+V
Sbjct: 277 NALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVV 336

Query: 79  SWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARE----L 130
           SWNS+I   +   +  EA ELF +M      PD  +   +++C +  G+L   ++    +
Sbjct: 337 SWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYI 396

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
            D +     T C N+++  YAK G    A  +   MP KN+VSWN ++     +G    A
Sbjct: 397 CDNIITVSVTLC-NSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEA 455

Query: 191 SKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLS 241
            + F++M+      D +++  +L        +D    +F  +     +S     +  M+ 
Sbjct: 456 IEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVEHYACMVD 515

Query: 242 GYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARL---FIEMPERNPVS 297
              R G + EA  L  +MP++ +VV W A++ A    G +E A ++    +E+   N   
Sbjct: 516 LLGRGGFLGEAMTLIQKMPVKPDVVVWGALLGACRIYGNLEIAKQIMKQLLELGRFNSGL 575

Query: 298 WTTMIDGYVRIAKLDEARRL 317
           +  + + Y    + D+ +++
Sbjct: 576 YVLLSNMYSESQRWDDMKKI 595



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 91/231 (39%), Gaps = 44/231 (19%)

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
           K   H TL   L  C+ +  L+L   +H   I  G    +     L+++  + G ++ A 
Sbjct: 35  KSPTHQTLHHLLDQCSSMKRLKL---VHAQIILHGLAAQVVTLGKLLSLCVQEGDLRYAH 91

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS--- 567
           LLF      +   +N LI GY+ + +  +++ LF +MV  G  P+  TF  VL AC+   
Sbjct: 92  LLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKP 151

Query: 568 --------HVGLVDGGLKLFECMTEVYAIEPLVEHYAC---------------------- 597
                   H   +  G+    C+        L  + AC                      
Sbjct: 152 FYWEAVIVHAQAIKLGMGPHACVQNAI----LTAYVACRLILSARQVFDDISDRTIVSWN 207

Query: 598 -MIDLLSRAGRLDEA---FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGR 644
            MI   S+ G  DEA   F+ +  + ++ +     +LL A   H N+ LGR
Sbjct: 208 SMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGR 258


>gi|297844718|ref|XP_002890240.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336082|gb|EFH66499.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  327 bits (838), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 195/618 (31%), Positives = 322/618 (52%), Gaps = 34/618 (5%)

Query: 146 MVAGYAKIGNYNEAKKLLDAMPS---KNIVSWNSMLSGYTKNGEMHLASKFFEAMEER-- 200
            V+ Y+++G   +A+ + + +      ++  WNS+L     +G    A + +  M ER  
Sbjct: 95  FVSVYSRLGLLLDARNVFETVSLVLWSDLRLWNSILKANVSHGLYENAFELYRGMRERGL 154

Query: 201 --DVVSWNLMLDGYVELDDLDSAWKFFQKIPE----QNVVSWVTMLSGYARNGRMLEARR 254
             D     L+L     L        F  ++ +    +N+     +L+ Y +  R+ +A  
Sbjct: 155 TGDGFILPLILRACRYLGRFGLCRAFHSQVIQIGLKENLHVANELLTLYPKAARIGDAYN 214

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN----PVSWTTMIDGYVRIAK 310
           LF +MP+RN ++WN MI  + Q    E A ++F  M   +     V+WT+++  + +  K
Sbjct: 215 LFVEMPVRNRMSWNVMIKGFSQEFDCESAVKIFEWMQREDFKPDEVTWTSLLSCHSQCGK 274

Query: 311 LDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV-------CW--- 360
            ++  +    M     A     ++ +        A  I DK+  H  V       C    
Sbjct: 275 FEDVIKYFHVMRMSASAVSGEALAVFFSVCAELGALSIADKV--HGFVIKGGFEECLPSR 332

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK---- 416
           N +I  Y + G++ +A  LFRQ+ NK I +WN++I  +    ++D+A+ +F E+ +    
Sbjct: 333 NALIHVYGKQGKVKDAEQLFRQIRNKGIESWNSLITSFVDAGKLDEALSLFTELEEMDDV 392

Query: 417 ---RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQL 473
              + N V+W ++I G         +L+ F  M      ++  T+ C LS CA L AL L
Sbjct: 393 CNVKANVVTWTSVIKGCNVQGRGDYSLEYFRRMQFSKVLSNSVTICCILSICAELPALNL 452

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
           GR+IH   I++   +++ V N+L+ MY KCG ++   L+F+     D+ISWNS+I GY +
Sbjct: 453 GREIHGHVIRTSMSDNILVQNALVNMYTKCGLLREGSLVFEAIRDKDLISWNSIIKGYGM 512

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVE 593
           +G   +A+ +F+ M+  G  PD +  + VLSACSH GLV+ G K+F  M++ + +EP  E
Sbjct: 513 HGFGEKALSMFDRMIKSGCHPDGIALVAVLSACSHAGLVEKGRKIFYSMSKRFGLEPQQE 572

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653
           HYAC++DLL R G L EA E+VK M ++P   + G LL +CRMH+N+ +  I   +L  L
Sbjct: 573 HYACIVDLLGRVGFLKEASEIVKNMPMEPKVCVLGALLNSCRMHKNMDIAEIIASQLRVL 632

Query: 654 EPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPK 713
           EP++T  Y LLSN+++  GRW+E  KVR   +    +K  G SWIE+K +I+ F SG   
Sbjct: 633 EPERTGSYMLLSNIYSAGGRWEESAKVRALAKKKDLKKVSGSSWIELKKKIYKFSSGSIV 692

Query: 714 QCRTAEICNTLKTLAAQI 731
           Q   A I   L+ L + +
Sbjct: 693 QSEFASIYPVLEDLVSHM 710



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 95/403 (23%), Positives = 185/403 (45%), Gaps = 56/403 (13%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           ++N    N +++ Y K  R+ DA  LF +MP RN +SWN MI G+      + A ++F+ 
Sbjct: 190 KENLHVANELLTLYPKAARIGDAYNLFVEMPVRNRMSWNVMIKGFSQEFDCESAVKIFEW 249

Query: 103 M----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGY---AKIGN 155
           M    F+PD  +W  +++C+++ G+ E   + F ++          A+   +   A++G 
Sbjct: 250 MQREDFKPDEVTWTSLLSCHSQCGKFEDVIKYFHVMRMSASAVSGEALAVFFSVCAELGA 309

Query: 156 YNEAKKLL---------DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN 206
            + A K+          + +PS+     N+++  Y K G++  A + F  +  + + SWN
Sbjct: 310 LSIADKVHGFVIKGGFEECLPSR-----NALIHVYGKQGKVKDAEQLFRQIRNKGIESWN 364

Query: 207 LMLDGYVELDDLDSAWKFFQKIPEQ--------NVVSWVTMLSGYARNGRMLEARRLFDQ 258
            ++  +V+   LD A   F ++ E         NVV+W +++ G    GR   +   F +
Sbjct: 365 SLITSFVDAGKLDEALSLFTELEEMDDVCNVKANVVTWTSVIKGCNVQGRGDYSLEYFRR 424

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
           M    V++ +  I   +          +  E+P  N       I G+V    + +     
Sbjct: 425 MQFSKVLSNSVTICCILS---------ICAELPALN---LGREIHGHVIRTSMSD----- 467

Query: 319 DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
                 NI  Q A+++ Y +   + E + +F+ I   D++ WN +IKGY   G  ++A++
Sbjct: 468 ------NILVQNALVNMYTKCGLLREGSLVFEAIRDKDLISWNSIIKGYGMHGFGEKALS 521

Query: 379 LFRQMV----NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
           +F +M+    + D +    +++  +    ++   KIF  M KR
Sbjct: 522 MFDRMIKSGCHPDGIALVAVLSACSHAGLVEKGRKIFYSMSKR 564



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 108/498 (21%), Positives = 202/498 (40%), Gaps = 101/498 (20%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQ---RNLVSWNSMIAGYLHNDKVKEARELFDKM---- 103
           + +S Y++ G + DAR +FE +      +L  WNS++   + +   + A EL+  M    
Sbjct: 94  NFVSVYSRLGLLLDARNVFETVSLVLWSDLRLWNSILKANVSHGLYENAFELYRGMRERG 153

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAK 160
              D F   L++      G     R     +     KE+    N ++  Y K     +A 
Sbjct: 154 LTGDGFILPLILRACRYLGRFGLCRAFHSQVIQIGLKENLHVANELLTLYPKAARIGDAY 213

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELD 216
            L   MP +N +SWN M+ G+++  +   A K FE M+  D     V+W  +L  + +  
Sbjct: 214 NLFVEMPVRNRMSWNVMIKGFSQEFDCESAVKIFEWMQREDFKPDEVTWTSLLSCHSQCG 273

Query: 217 DLDSAWKFFQKIP---------------------------------------EQNVVSWV 237
             +   K+F  +                                        E+ + S  
Sbjct: 274 KFEDVIKYFHVMRMSASAVSGEALAVFFSVCAELGALSIADKVHGFVIKGGFEECLPSRN 333

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE----- 292
            ++  Y + G++ +A +LF Q+  + + +WN++I ++V  G+++EA  LF E+ E     
Sbjct: 334 ALIHVYGKQGKVKDAEQLFRQIRNKGIESWNSLITSFVDAGKLDEALSLFTELEEMDDVC 393

Query: 293 ---RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF 349
               N V+WT++I G     + D +     +M +  + + +  I   +       A  + 
Sbjct: 394 NVKANVVTWTSVIKGCNVQGRGDYSLEYFRRMQFSKVLSNSVTICCILSICAELPALNLG 453

Query: 350 DKIGTH--------DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQI 401
            +I  H        +++  N ++  Y +CG + E   +F  + +KD+++WN++I GY   
Sbjct: 454 REIHGHVIRTSMSDNILVQNALVNMYTKCGLLREGSLVFEAIRDKDLISWNSIIKGYG-- 511

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
                                    + GF +      AL +F  M + G   D   L   
Sbjct: 512 -------------------------MHGFGEK-----ALSMFDRMIKSGCHPDGIALVAV 541

Query: 462 LSACAHLAALQLGRQIHH 479
           LSAC+H   ++ GR+I +
Sbjct: 542 LSACSHAGLVEKGRKIFY 559



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/271 (23%), Positives = 123/271 (45%), Gaps = 28/271 (10%)

Query: 17  NQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ-- 74
           ++N  I   GK G+V++A ++F Q+  K   ++NS+I+++   G++++A  LF ++ +  
Sbjct: 331 SRNALIHVYGKQGKVKDAEQLFRQIRNKGIESWNSLITSFVDAGKLDEALSLFTELEEMD 390

Query: 75  ------RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCY----TRKGEL 124
                  N+V+W S+I G     +   + E F +M    + S ++ I C          L
Sbjct: 391 DVCNVKANVVTWTSVIKGCNVQGRGDYSLEYFRRMQFSKVLSNSVTICCILSICAELPAL 450

Query: 125 EKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
              RE+   +      ++    NA+V  Y K G   E   + +A+  K+++SWNS++ GY
Sbjct: 451 NLGREIHGHVIRTSMSDNILVQNALVNMYTKCGLLREGSLVFEAIRDKDLISWNSIIKGY 510

Query: 182 TKNGEMHLASKFFEAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKI-------PE 230
             +G    A   F+ M +     D ++   +L        ++   K F  +       P+
Sbjct: 511 GMHGFGEKALSMFDRMIKSGCHPDGIALVAVLSACSHAGLVEKGRKIFYSMSKRFGLEPQ 570

Query: 231 QNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
           Q   + +  L G  R G + EA  +   MP+
Sbjct: 571 QEHYACIVDLLG--RVGFLKEASEIVKNMPM 599


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  327 bits (838), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 202/658 (30%), Positives = 326/658 (49%), Gaps = 88/658 (13%)

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV 213
           G+ + A+ + D MP KNI S N +LS Y+ +G++  A   F +   R+  +W +M+  + 
Sbjct: 57  GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHA 116

Query: 214 ELDDLDSAWKFFQK------IPEQNVVSWV----------------------------TM 239
                  A   F+       IP++  V+ V                            T+
Sbjct: 117 AAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCNTL 176

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWT 299
           L  Y ++G +  ARR+F +M  ++ V +NAM+    + G   +A +LF  M  R  +  T
Sbjct: 177 LDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAM-RRAGIPAT 235

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMD---------EANQIFD 350
                 +       A  LL    +  +   T++++ +V N  +D         +  ++FD
Sbjct: 236 HFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFD 295

Query: 351 KIGTHDVVCWNVMIKGYA--QCGRMDEAINLFRQM----VNKDIVTWNTM--IAG----- 397
           ++   D V +NV+I  YA  QC      + LFR+M     ++ ++ + TM  +AG     
Sbjct: 296 EMPERDNVSYNVIIAAYAWNQCAA--TVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDV 353

Query: 398 ----------------------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
                                       Y++   +D A   F    ++ + +SW ALI+G
Sbjct: 354 HIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEK-SAISWTALITG 412

Query: 430 FLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND 489
           ++QN  H +AL++F  M + G + D +T +  + A + LA + LGRQ+H   I+SGY + 
Sbjct: 413 YVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSS 472

Query: 490 LFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549
           +F G+ L+ MYAKCG +  A   F +    + ISWN++I+ YA  G A  AIK+FE M+ 
Sbjct: 473 VFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLH 532

Query: 550 EGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLD 609
            G  PD VTF+ VL+ACSH GL D  +K F  M   Y+I P  EHYAC+ID L R G   
Sbjct: 533 CGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFS 592

Query: 610 EAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHA 669
           +  +M+  M  K +  IW ++L +CR+H N +L R+A +KL  +EP   + Y +LSN++A
Sbjct: 593 QVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYA 652

Query: 670 EAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
            AG+W++   V+  M   G +K+ G SW+E+K +I++F S D       EI + L  L
Sbjct: 653 RAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRL 710



 Score =  152 bits (385), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 158/621 (25%), Positives = 270/621 (43%), Gaps = 86/621 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            +  N  +  L  SG +  A  +F QM  KN  + N ++SAY+ +G +  A+ LF   P 
Sbjct: 43  TYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPH 102

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFR---------------------PDLFSWAL 113
           RN  +W  M+  +    +  +A  LF  M                       P L  +A+
Sbjct: 103 RNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAI 162

Query: 114 -------------MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
                        ++  Y + G L  AR +F L  + +D   +NAM+ G +K G + +A 
Sbjct: 163 KFGLDTHVFVCNTLLDAYCKHGLLAAARRVF-LEMHDKDAVTYNAMMMGCSKEGLHTQAL 221

Query: 161 KLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASK----FFEAMEERDVVSWNLMLDGY 212
           +L  AM    I     +++S+L+       + L  +       +    +V   N +LD Y
Sbjct: 222 QLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFY 281

Query: 213 VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI----RNVVAWN 268
            + D LD   + F ++PE++ VS+  +++ YA N       RLF +M      R V+ + 
Sbjct: 282 SKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYA 341

Query: 269 AMIAAY-----VQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
            M++       V  G+   A  + + +   + +    +ID Y +   LD A+        
Sbjct: 342 TMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLG-NALIDMYSKCGMLDAAKSNFSNRSE 400

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIFDKIG----THDVVCWNVMIKGYAQ-----CGRMD 374
           K+  + TA+I+GYVQN + +EA Q+F  +       D   ++ +IK  +       GR  
Sbjct: 401 KSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQL 460

Query: 375 EAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
            +  L R      + + + ++  YA+   +D+A++ F+EM + RN++SWNA+IS +    
Sbjct: 461 HSY-LIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPE-RNSISWNAVISAYAHYG 518

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN 494
              +A+K+F  M   G   D  T    L+AC+H        +  HL +K  Y    +  +
Sbjct: 519 EAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHL-MKHQYSISPWKEH 577

Query: 495 --SLITMYAKCG---RIQN--AELLFKDADPVDVISWNSLIAGYAINGNA----TEAIKL 543
              +I    + G   ++Q    E+ FK ADP   I W S++    I+GN       A KL
Sbjct: 578 YACVIDTLGRVGCFSQVQKMLVEMPFK-ADP---IIWTSILHSCRIHGNQELARVAADKL 633

Query: 544 FEEMVMEGVAPDPVTFIGVLS 564
           F      G+ P   T   +LS
Sbjct: 634 F------GMEPTDATPYVILS 648



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 104/441 (23%), Positives = 189/441 (42%), Gaps = 64/441 (14%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           ++VF  N  +    K G +  A ++F +M  K+ VTYN+M+   +K G    A +LF  M
Sbjct: 168 THVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAM 227

Query: 73  PQRNL----VSWNSMI---AGYLHNDKVKEARELFDKMFRP-DLFSWALMITCYTRKGEL 124
            +  +     +++S++   AG  H     +   L  +     ++F    ++  Y++   L
Sbjct: 228 RRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCL 287

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP----SKNIVSWNSMLSG 180
           +  R LFD +P + D   +N ++A YA         +L   M      + ++ + +MLS 
Sbjct: 288 DDMRRLFDEMPER-DNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSV 346

Query: 181 YTKNGEMHLASKFFEAMEERDVVSWNL----MLDGYVELDDLDSAWKFFQKIPEQNVVSW 236
                ++H+  +    +    + S +L    ++D Y +   LD+A   F    E++ +SW
Sbjct: 347 AGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISW 406

Query: 237 VTMLSGYARNGRMLEARRLFDQM------PIRNVVAWNAMIAAYVQRGQIEEAARL---F 287
             +++GY +NG+  EA +LF  M      P R    ++++I A      I    +L    
Sbjct: 407 TALITGYVQNGQHEEALQLFSDMRRAGLRPDR--ATFSSIIKASSSLAMIGLGRQLHSYL 464

Query: 288 IEMPERNPV-SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEAN 346
           I    ++ V S + ++D Y +   LDEA R  D+MP +N                     
Sbjct: 465 IRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERN--------------------- 503

Query: 347 QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV----NKDIVTWNTMIAGYAQIR 402
                      + WN +I  YA  G    AI +F  M+    N D VT+ +++A  +   
Sbjct: 504 ----------SISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNG 553

Query: 403 QMDDAVKIFEEMGKRRNTVSW 423
             D+ +K F  M  + +   W
Sbjct: 554 LADECMKYFHLMKHQYSISPW 574



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 132/286 (46%), Gaps = 22/286 (7%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           N++I  Y+K G ++ A+  F    +++ +SW ++I GY+ N + +EA +LF  M     R
Sbjct: 376 NALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLR 435

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL 162
           PD  +++ +I   +    +   R+L   L     K      + +V  YAK G  +EA + 
Sbjct: 436 PDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRT 495

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE----RDVVSWNLMLDGYVELDDL 218
            D MP +N +SWN+++S Y   GE   A K FE M       D V++  +L         
Sbjct: 496 FDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLA 555

Query: 219 DSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIA 272
           D   K+F  +  Q  +S     +  ++    R G   + +++  +MP + + + W +++ 
Sbjct: 556 DECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILH 615

Query: 273 AYVQRGQIEEAARL----FIEMPERNPVSWTTMIDGYVRIAKLDEA 314
           +    G  +E AR+       M   +   +  + + Y R  + ++A
Sbjct: 616 SCRIHGN-QELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDA 660



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 134/288 (46%), Gaps = 24/288 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  I    K G ++ A   FS  S+K+ +++ ++I+ Y +NG+  +A +LF  M +  L 
Sbjct: 376 NALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLR 435

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAREL 130
               +++S+I        +   R+L   + R      +FS ++++  Y + G L++A   
Sbjct: 436 PDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRT 495

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP----SKNIVSWNSMLSGYTKNGE 186
           FD +P +   + WNA+++ YA  G    A K+ + M     + + V++ S+L+  + NG 
Sbjct: 496 FDEMPERNSIS-WNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGL 554

Query: 187 MHLASKFFEAMEERDVVS-----WNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSWVTML 240
                K+F  M+ +  +S     +  ++D    +       K   ++P + + + W ++L
Sbjct: 555 ADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSIL 614

Query: 241 SGYARNGRMLEAR----RLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA 284
                +G    AR    +LF   P  +   +  +   Y + GQ E+AA
Sbjct: 615 HSCRIHGNQELARVAADKLFGMEPT-DATPYVILSNIYARAGQWEDAA 661



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 96/209 (45%), Gaps = 37/209 (17%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S VF+ +  +    K G ++EA++ F +M ++N++++N++ISAYA  G   +A K+FE M
Sbjct: 471 SSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGM 530

Query: 73  PQRNL----VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAR 128
                    V++ S++A   HN    E  + F  M                        +
Sbjct: 531 LHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLM------------------------K 566

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK-NIVSWNSMLSGYTKNGEM 187
             + + P KE  AC   ++    ++G +++ +K+L  MP K + + W S+L     +G  
Sbjct: 567 HQYSISPWKEHYAC---VIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQ 623

Query: 188 HL----ASKFFEAMEERDVVSWNLMLDGY 212
            L    A K F  ME  D   + ++ + Y
Sbjct: 624 ELARVAADKLF-GMEPTDATPYVILSNIY 651


>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 749

 Score =  327 bits (838), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 206/672 (30%), Positives = 345/672 (51%), Gaps = 66/672 (9%)

Query: 124 LEKARELFDL-----LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSML 178
           L+KA+ +        L  K  T   N +V  Y+K  ++  A+++ D +P K++ SW  ++
Sbjct: 77  LKKAKSIHGFVIKFQLIEKSLTVMLNQLVIAYSKCSDFGSARQVFDEIPQKSVFSWTVLM 136

Query: 179 SGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE---------LDDLDSAWKFFQKIP 229
            G T+NG       +F  +   D+V     L   ++         + ++  A    +   
Sbjct: 137 VGATENGFYRDGIDYFVEILGCDIVPDEYALSAAIQACIGVDSIVVGEMVHAQVITRGFS 196

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIE 289
            +  V+  ++L  YA+ GR+ ++ ++F+ +  RN V+WNAMI+ +V  G   EA   F+ 
Sbjct: 197 SRTFVN-TSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAMISGFVSNGLYAEAYNSFLR 255

Query: 290 M--PERNPVSWTTMIDGYVRIAKLD--EARRLLDQMPYK-----NIAAQTAMISGYVQNK 340
           M   E  P +    I     I +L   E  R ++++ ++     NI   TA+I  + +  
Sbjct: 256 MLGEEIRP-NVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQSNIHVGTALIDMFAKCG 314

Query: 341 RMDEANQIF--DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTW--- 391
            + E+  +F  +  G    + WN MI G+   G  +EA+ LF +M    + +D+ T+   
Sbjct: 315 CVTESWSVFVSNFSGCGVNLPWNAMISGFTISGHGEEAMLLFLRMCQNNIKRDVYTYCST 374

Query: 392 -------------------------------NTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
                                          N ++  YA+  ++D   K+F+   +  N 
Sbjct: 375 LNSIADMRSLEYVKQLHGMIWKSGSIGVSLCNALMDAYAKCGELDAMRKLFDTW-EESNQ 433

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
           +SW  L++ + Q+    DAL +F  M + G + +  T +  L++CA L +L+ G+Q+H L
Sbjct: 434 ISWTTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVLASCASLCSLEYGQQVHSL 493

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEA 540
             K+G+  D  V + LI MYAKCG +++A  +F+     DVISW ++I+GYA +G A +A
Sbjct: 494 TCKTGFARDKCVESVLIDMYAKCGSVRDAIKVFESLKDPDVISWTAMISGYAQHGMAKDA 553

Query: 541 IKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMID 600
           ++LF +M +    P+  TF+ +L ACSH GLVD GL+ F  M E Y + P +EHYAC++D
Sbjct: 554 LELFRKMELVLPNPNSATFLCLLFACSHGGLVDEGLRYFHLMEERYGLVPEIEHYACVVD 613

Query: 601 LLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSC 660
           +L R GRL EA++ +  M I+P+  +W TLLGACR+H NI+L +IA +K+    P   + 
Sbjct: 614 ILGRVGRLTEAWKFIMKMPIEPDEKVWSTLLGACRVHGNIQLAKIAAQKVLSYNPDDFAA 673

Query: 661 YALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
             LLSN + EAG  +    VR  M+    +K+ G SWI +  +IH F SGD    +  +I
Sbjct: 674 LVLLSNTYREAGNIEGGLNVRNMMKSQAMRKETGMSWICIGGKIHKFCSGDQYHPQKDDI 733

Query: 721 CNTLKTLAAQIR 732
             TL  L  +++
Sbjct: 734 YKTLNVLMEKVQ 745



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 195/414 (47%), Gaps = 28/414 (6%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKE 95
           ++ ++     T    S++  YAK GR+ D+ K+F  +  RN VSWN+MI+G++ N    E
Sbjct: 189 QVITRGFSSRTFVNTSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAMISGFVSNGLYAE 248

Query: 96  ARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVA 148
           A   F +M     RP++  +  +     + G++EK R +  +   +  + +     A++ 
Sbjct: 249 AYNSFLRMLGEEIRPNVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQSNIHVGTALID 308

Query: 149 GYAKIGNYNEAKKLLDAMPSKNIVS--WNSMLSGYTKNGEMHLASKFFEAMEE----RDV 202
            +AK G   E+  +  +  S   V+  WN+M+SG+T +G    A   F  M +    RDV
Sbjct: 309 MFAKCGCVTESWSVFVSNFSGCGVNLPWNAMISGFTISGHGEEAMLLFLRMCQNNIKRDV 368

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV---TMLSGYARNGRMLEARRLFDQM 259
            ++   L+   ++  L+   +    I +   +       ++  YA+ G +   R+LFD  
Sbjct: 369 YTYCSTLNSIADMRSLEYVKQLHGMIWKSGSIGVSLCNALMDAYAKCGELDAMRKLFDTW 428

Query: 260 PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEAR 315
              N ++W  ++ AY Q  + E+A  +F +M E     N V+++ ++     +  L+  +
Sbjct: 429 EESNQISWTTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVLASCASLCSLEYGQ 488

Query: 316 RLLDQMPYKNIA----AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
           ++         A     ++ +I  Y +   + +A ++F+ +   DV+ W  MI GYAQ G
Sbjct: 489 QVHSLTCKTGFARDKCVESVLIDMYAKCGSVRDAIKVFESLKDPDVISWTAMISGYAQHG 548

Query: 372 RMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
              +A+ LFR+M     N +  T+  ++   +    +D+ ++ F  M +R   V
Sbjct: 549 MAKDALELFRKMELVLPNPNSATFLCLLFACSHGGLVDEGLRYFHLMEERYGLV 602



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 137/657 (20%), Positives = 271/657 (41%), Gaps = 143/657 (21%)

Query: 25  LGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMI 84
           L K+  +   +  F  + +  TV  N ++ AY+K      AR++F+++PQ+++ SW  ++
Sbjct: 77  LKKAKSIHGFVIKFQLIEKSLTVMLNQLVIAYSKCSDFGSARQVFDEIPQKSVFSWTVLM 136

Query: 85  AGYLHNDKVKEARELFDKMFR----PDLFSWALMI-TCYTRK----GELEKARELFDLLP 135
            G   N   ++  + F ++      PD ++ +  I  C        GE+  A+ +     
Sbjct: 137 VGATENGFYRDGIDYFVEILGCDIVPDEYALSAAIQACIGVDSIVVGEMVHAQVITRGFS 196

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
           ++  T    +++  YAK+G   ++ K+ +++ ++N VSWN+M+SG+  NG    A   F 
Sbjct: 197 SR--TFVNTSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAMISGFVSNGLYAEAYNSFL 254

Query: 196 AM---EERDVVSWNLMLDGYV-ELDDLDSAWKFFQKIP-----EQNVVSWVTMLSGYARN 246
            M   E R  V+  + +   + +L D++   ++  +I      + N+     ++  +A+ 
Sbjct: 255 RMLGEEIRPNVACFISVSKAIGQLGDVEKG-RYINRIAFEIGMQSNIHVGTALIDMFAKC 313

Query: 247 GRMLEARRLFDQMPIRNV------VAWNAMIAAYVQRGQIEEAARLFIEMPERN------ 294
           G + E+  +F    + N       + WNAMI+ +   G  EEA  LF+ M + N      
Sbjct: 314 GCVTESWSVF----VSNFSGCGVNLPWNAMISGFTISGHGEEAMLLFLRMCQNNIKRDVY 369

Query: 295 ----------------------PVSWTT----------MIDGYVRIAKLDEARRLLDQMP 322
                                  + W +          ++D Y +  +LD  R+L D   
Sbjct: 370 TYCSTLNSIADMRSLEYVKQLHGMIWKSGSIGVSLCNALMDAYAKCGELDAMRKLFDTWE 429

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKI-----------------------------G 353
             N  + T +++ Y Q+   ++A  +F ++                              
Sbjct: 430 ESNQISWTTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVLASCASLCSLEYGQQ 489

Query: 354 THDVVC----------WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQ 403
            H + C           +V+I  YA+CG + +AI +F  + + D+++W  MI+GYAQ   
Sbjct: 490 VHSLTCKTGFARDKCVESVLIDMYAKCGSVRDAIKVFESLKDPDVISWTAMISGYAQHGM 549

Query: 404 MDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALS 463
             DA+++F +M                   E  L                + +T  C L 
Sbjct: 550 AKDALELFRKM-------------------ELVL-------------PNPNSATFLCLLF 577

Query: 464 ACAHLAALQLG-RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA-ELLFKDADPVDV 521
           AC+H   +  G R  H +  + G V ++     ++ +  + GR+  A + + K     D 
Sbjct: 578 ACSHGGLVDEGLRYFHLMEERYGLVPEIEHYACVVDILGRVGRLTEAWKFIMKMPIEPDE 637

Query: 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
             W++L+    ++GN   A K+  + V+     D    + + +     G ++GGL +
Sbjct: 638 KVWSTLLGACRVHGNIQLA-KIAAQKVLSYNPDDFAALVLLSNTYREAGNIEGGLNV 693



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 131/285 (45%), Gaps = 24/285 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP----Q 74
           N  +    K G ++   K+F    + N +++ ++++AY+++    DA  +F QM     Q
Sbjct: 406 NALMDAYAKCGELDAMRKLFDTWEESNQISWTTLVTAYSQSSEWEDALSVFSQMREMGFQ 465

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKAREL 130
            N V+++ ++A       ++  +++        F  D    +++I  Y + G +  A ++
Sbjct: 466 PNQVTFSGVLASCASLCSLEYGQQVHSLTCKTGFARDKCVESVLIDMYAKCGSVRDAIKV 525

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM----PSKNIVSWNSMLSGYTKNGE 186
           F+ L +  D   W AM++GYA+ G   +A +L   M    P+ N  ++  +L   +  G 
Sbjct: 526 FESLKDP-DVISWTAMISGYAQHGMAKDALELFRKMELVLPNPNSATFLCLLFACSHGGL 584

Query: 187 MHLASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSWVTML 240
           +    ++F  MEER     ++  +  ++D    +  L  AWKF  K+P E +   W T+L
Sbjct: 585 VDEGLRYFHLMEERYGLVPEIEHYACVVDILGRVGRLTEAWKFIMKMPIEPDEKVWSTLL 644

Query: 241 SGYARNGRM----LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIE 281
                +G +    + A+++    P  +  A   +   Y + G IE
Sbjct: 645 GACRVHGNIQLAKIAAQKVLSYNP-DDFAALVLLSNTYREAGNIE 688


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 202/658 (30%), Positives = 326/658 (49%), Gaps = 88/658 (13%)

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV 213
           G+ + A+ + D MP KNI S N +LS Y+ +G++  A   F +   R+  +W +M+  + 
Sbjct: 57  GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHA 116

Query: 214 ELDDLDSAWKFFQK------IPEQNVVSWV----------------------------TM 239
                  A   F+       IP++  V+ V                            T+
Sbjct: 117 AAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCNTL 176

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWT 299
           L  Y ++G +  ARR+F +M  ++ V +NAM+    + G   +A +LF  M  R  +  T
Sbjct: 177 LDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAM-RRAGIPAT 235

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMD---------EANQIFD 350
                 +       A  LL    +  +   T++++ +V N  +D         +  ++FD
Sbjct: 236 HFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFD 295

Query: 351 KIGTHDVVCWNVMIKGYA--QCGRMDEAINLFRQM----VNKDIVTWNTM--IAG----- 397
           ++   D V +NV+I  YA  QC      + LFR+M     ++ ++ + TM  +AG     
Sbjct: 296 EMPERDNVSYNVIIAAYAWNQCAA--TVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDV 353

Query: 398 ----------------------------YAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
                                       Y++   +D A   F    ++ + +SW ALI+G
Sbjct: 354 HIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEK-SAISWTALITG 412

Query: 430 FLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND 489
           ++QN  H +AL++F  M + G + D +T +  + A + LA + LGRQ+H   I+SGY + 
Sbjct: 413 YVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSS 472

Query: 490 LFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549
           +F G+ L+ MYAKCG +  A   F +    + ISWN++I+ YA  G A  AIK+FE M+ 
Sbjct: 473 VFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLH 532

Query: 550 EGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLD 609
            G  PD VTF+ VL+ACSH GL D  +K F  M   Y+I P  EHYAC+ID L R G   
Sbjct: 533 CGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFS 592

Query: 610 EAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHA 669
           +  +M+  M  K +  IW ++L +CR+H N +L R+A +KL  +EP   + Y +LSN++A
Sbjct: 593 QVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYA 652

Query: 670 EAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
            AG+W++   V+  M   G +K+ G SW+E+K +I++F S D       EI + L  L
Sbjct: 653 RAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRL 710



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 158/621 (25%), Positives = 270/621 (43%), Gaps = 86/621 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            +  N  +  L  SG +  A  +F QM  KN  + N ++SAY+ +G +  A+ LF   P 
Sbjct: 43  TYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPH 102

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFR---------------------PDLFSWAL 113
           RN  +W  M+  +    +  +A  LF  M                       P L  +A+
Sbjct: 103 RNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAI 162

Query: 114 -------------MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
                        ++  Y + G L  AR +F L  + +D   +NAM+ G +K G + +A 
Sbjct: 163 KFGLDTHVFVCNTLLDAYCKHGLLAAARRVF-LEMHDKDAVTYNAMMMGCSKEGLHTQAL 221

Query: 161 KLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASK----FFEAMEERDVVSWNLMLDGY 212
           +L  AM    I     +++S+L+       + L  +       +    +V   N +LD Y
Sbjct: 222 QLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFY 281

Query: 213 VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI----RNVVAWN 268
            + D LD   + F ++PE++ VS+  +++ YA N       RLF +M      R V+ + 
Sbjct: 282 SKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYA 341

Query: 269 AMIAAY-----VQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323
            M++       V  G+   A  + + +   + +    +ID Y +   LD A+        
Sbjct: 342 TMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLG-NALIDMYSKCGMLDAAKSNFSNRSE 400

Query: 324 KNIAAQTAMISGYVQNKRMDEANQIFDKIG----THDVVCWNVMIKGYAQ-----CGRMD 374
           K+  + TA+I+GYVQN + +EA Q+F  +       D   ++ +IK  +       GR  
Sbjct: 401 KSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQL 460

Query: 375 EAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
            +  L R      + + + ++  YA+   +D+A++ F+EM + RN++SWNA+IS +    
Sbjct: 461 HSY-LIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPE-RNSISWNAVISAYAHYG 518

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN 494
              +A+K+F  M   G   D  T    L+AC+H        +  HL +K  Y    +  +
Sbjct: 519 EAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHL-MKHQYSISPWKEH 577

Query: 495 --SLITMYAKCG---RIQN--AELLFKDADPVDVISWNSLIAGYAINGNA----TEAIKL 543
              +I    + G   ++Q    E+ FK ADP   I W S++    I+GN       A KL
Sbjct: 578 YACVIDTLGRVGCFSQVQKMLVEMPFK-ADP---IIWTSILHSCRIHGNQELARVAADKL 633

Query: 544 FEEMVMEGVAPDPVTFIGVLS 564
           F      G+ P   T   +LS
Sbjct: 634 F------GMEPTDATPYVILS 648



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 104/445 (23%), Positives = 191/445 (42%), Gaps = 72/445 (16%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           ++VF  N  +    K G +  A ++F +M  K+ VTYN+M+   +K G    A +LF  M
Sbjct: 168 THVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAM 227

Query: 73  PQRNL----VSWNSMI---AGYLHNDKVKEARELFDKMFRP----DLFSWALMITCYTRK 121
            +  +     +++S++   AG  H   +    ++   + R     ++F    ++  Y++ 
Sbjct: 228 RRAGIPATHFTFSSILTVAAGMAH---LLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKC 284

Query: 122 GELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP----SKNIVSWNSM 177
             L+  R LFD +P + D   +N ++A YA         +L   M      + ++ + +M
Sbjct: 285 DCLDDMRRLFDEMPER-DNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATM 343

Query: 178 LSGYTKNGEMHLASKFFE-----AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQN 232
           LS      ++H+  +         +   D++  N ++D Y +   LD+A   F    E++
Sbjct: 344 LSVAGSLPDVHIGKQIHAQLVLLGLASEDLLG-NALIDMYSKCGMLDAAKSNFSNRSEKS 402

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQM------PIRNVVAWNAMIAAYVQRGQIEEAARL 286
            +SW  +++GY +NG+  EA +LF  M      P R    ++++I A      I    +L
Sbjct: 403 AISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDR--ATFSSIIKASSSLAMIGLGRQL 460

Query: 287 ---FIEMPERNPV-SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRM 342
               I    ++ V S + ++D Y +   LDEA R  D+MP +N                 
Sbjct: 461 HSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERN----------------- 503

Query: 343 DEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV----NKDIVTWNTMIAGY 398
                          + WN +I  YA  G    AI +F  M+    N D VT+ +++A  
Sbjct: 504 --------------SISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAAC 549

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSW 423
           +     D+ +K F  M  + +   W
Sbjct: 550 SHNGLADECMKYFHLMKHQYSISPW 574



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 132/286 (46%), Gaps = 22/286 (7%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           N++I  Y+K G ++ A+  F    +++ +SW ++I GY+ N + +EA +LF  M     R
Sbjct: 376 NALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLR 435

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL 162
           PD  +++ +I   +    +   R+L   L     K      + +V  YAK G  +EA + 
Sbjct: 436 PDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRT 495

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE----RDVVSWNLMLDGYVELDDL 218
            D MP +N +SWN+++S Y   GE   A K FE M       D V++  +L         
Sbjct: 496 FDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLA 555

Query: 219 DSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIA 272
           D   K+F  +  Q  +S     +  ++    R G   + +++  +MP + + + W +++ 
Sbjct: 556 DECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILH 615

Query: 273 AYVQRGQIEEAARL----FIEMPERNPVSWTTMIDGYVRIAKLDEA 314
           +    G  +E AR+       M   +   +  + + Y R  + ++A
Sbjct: 616 SCRIHGN-QELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDA 660



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 135/288 (46%), Gaps = 24/288 (8%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  I    K G ++ A   FS  S+K+ +++ ++I+ Y +NG+  +A +LF  M +  L 
Sbjct: 376 NALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLR 435

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAREL 130
               +++S+I        +   R+L   + R      +FS ++++  Y + G L++A   
Sbjct: 436 PDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRT 495

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP----SKNIVSWNSMLSGYTKNGE 186
           FD +P + ++  WNA+++ YA  G    A K+ + M     + + V++ S+L+  + NG 
Sbjct: 496 FDEMPER-NSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGL 554

Query: 187 MHLASKFFEAMEERDVVS-----WNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSWVTML 240
                K+F  M+ +  +S     +  ++D    +       K   ++P + + + W ++L
Sbjct: 555 ADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSIL 614

Query: 241 SGYARNGRMLEAR----RLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA 284
                +G    AR    +LF   P  +   +  +   Y + GQ E+AA
Sbjct: 615 HSCRIHGNQELARVAADKLFGMEPT-DATPYVILSNIYARAGQWEDAA 661



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 97/209 (46%), Gaps = 37/209 (17%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S VF+ +  +    K G ++EA++ F +M ++N++++N++ISAYA  G   +A K+FE M
Sbjct: 471 SSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGM 530

Query: 73  PQ----RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAR 128
                  + V++ S++A   HN    E  + F  M                        +
Sbjct: 531 LHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLM------------------------K 566

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK-NIVSWNSMLSGYTKNGEM 187
             + + P KE  AC   ++    ++G +++ +K+L  MP K + + W S+L     +G  
Sbjct: 567 HQYSISPWKEHYAC---VIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQ 623

Query: 188 HL----ASKFFEAMEERDVVSWNLMLDGY 212
            L    A K F  ME  D   + ++ + Y
Sbjct: 624 ELARVAADKLF-GMEPTDATPYVILSNIY 651


>gi|449476598|ref|XP_004154781.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 709

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 200/591 (33%), Positives = 314/591 (53%), Gaps = 43/591 (7%)

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----- 200
           +   YA  G    A+KL D +   ++  WN+++  Y   G    A + F++M        
Sbjct: 123 LAVSYAFCGCVPLARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKFWP 182

Query: 201 DVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLF 256
           D  ++ L++     +  L+       +        N+    ++L+ Y   G++  AR++F
Sbjct: 183 DKYTFPLVIKACSVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVF 242

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PERNPVSWTTMIDGY----- 305
           + M  R+VV+WN MI+ + Q G+ EEA  +F  M      P+   +       GY     
Sbjct: 243 NVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGYLKELE 302

Query: 306 --VRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVM 363
             +++ KL +   L +++  +N     A++  Y +   +DEA+ +F +    DV+ W  M
Sbjct: 303 LGIKVHKLVQKNHLQEKIEVRN-----ALVDMYSRCGGIDEASLVFAETKEKDVITWTSM 357

Query: 364 IKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAG-------YAQIRQMDDAVKIFE 412
           I GY   G    A+ L   M    V  + VT  ++++        YA+   +  + ++F 
Sbjct: 358 INGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACASLCYMYAKCNAVSYSFQVFA 417

Query: 413 EMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQ 472
           +  K+R TV WNAL+SG + NE   +A+ +F  M  E  +A+H+T    + A A LA L+
Sbjct: 418 KTSKKR-TVPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLK 476

Query: 473 LGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP---VDVISWNSLIA 529
               +H   ++SG+++ + V   LI MY+KCG +  A  +F D  P    D+I W+ LIA
Sbjct: 477 QVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIF-DEIPNKEKDIIVWSVLIA 535

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE 589
           GY ++G+   A+ LF +MV  G+ P+ +TF  VL ACSH GLVD GL LF+ M E Y   
Sbjct: 536 GYGMHGHGETAVLLFNQMVHSGMQPNEITFTSVLHACSHRGLVDDGLTLFKYMIENYPSS 595

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649
           PL  HY C++DLL RAGRLDEA++++K M  + N  IWG LLGAC +HQN++LG +A E+
Sbjct: 596 PLPNHYTCVVDLLGRAGRLDEAYDLIKSMPFQQNHSIWGALLGACLIHQNVELGEVAAER 655

Query: 650 LSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEV 700
           L ELEP+ T  Y LL+N++A  GRW + E VR  M   G +K P  S + V
Sbjct: 656 LFELEPESTGNYILLANIYAAVGRWKDAENVRHIMSKIGLRKTPAQSSVGV 706



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/400 (26%), Positives = 186/400 (46%), Gaps = 55/400 (13%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
             N    NS+++ Y   G+V  AR++F  M +R++VSWN+MI+G+  N + +EA  +F+ 
Sbjct: 216 SSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNS 275

Query: 103 MF----RPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGN 155
           M      PD  +    +       ELE   ++  L+     +E     NA+V  Y++ G 
Sbjct: 276 MMDARVEPDSATIVSALPSCGYLKELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCGG 335

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
            +EA  +      K++++W SM++GY  NG    A     AM+          LDG V  
Sbjct: 336 IDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQ----------LDGVVP- 384

Query: 216 DDLDSAWKFFQKIPEQNVVSWVTMLSG-------YARNGRMLEARRLFDQMPIRNVVAWN 268
                           N V+  ++LS        YA+   +  + ++F +   +  V WN
Sbjct: 385 ----------------NAVTLASLLSACASLCYMYAKCNAVSYSFQVFAKTSKKRTVPWN 428

Query: 269 AMIAAYVQRGQIEEAARLF----IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324
           A+++  +      EA  LF    IE  E N  ++ ++I  Y  +A L +   L   +   
Sbjct: 429 ALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVRS 488

Query: 325 NIAAQTAMISG----YVQNKRMDEANQIFDKIGT--HDVVCWNVMIKGYAQCGRMDEAIN 378
              ++ A+I+G    Y +   +D A++IFD+I     D++ W+V+I GY   G  + A+ 
Sbjct: 489 GFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVL 548

Query: 379 LFRQMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEM 414
           LF QMV+  +    +T+ +++   +    +DD + +F+ M
Sbjct: 549 LFNQMVHSGMQPNEITFTSVLHACSHRGLVDDGLTLFKYM 588



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 128/559 (22%), Positives = 234/559 (41%), Gaps = 94/559 (16%)

Query: 55  AYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLF 109
           +YA  G V  ARKLF+ +   +L  WN++I  Y+      +A  +FD M     F PD +
Sbjct: 126 SYAFCGCVPLARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKFWPDKY 185

Query: 110 SWALMI-TCYTRK----GELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLD 164
           ++ L+I  C        G L   R L        +    N+++A Y   G    A+++ +
Sbjct: 186 TFPLVIKACSVMSMLNVGVLIHGRALVSGF--SSNMFVQNSLLAMYMNCGKVGLARQVFN 243

Query: 165 AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKF 224
            M  +++VSWN+M+SG+ +NG             E  +  +N M+D  VE D    +   
Sbjct: 244 VMLKRSVVSWNTMISGWFQNGR-----------PEEALAVFNSMMDARVEPD----SATI 288

Query: 225 FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA 284
              +P      ++  L    +  ++++   L +++ +R     NA++  Y + G I+EA+
Sbjct: 289 VSALPS---CGYLKELELGIKVHKLVQKNHLQEKIEVR-----NALVDMYSRCGGIDEAS 340

Query: 285 RLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG--------- 335
            +F E  E++ ++WT+MI+GY+       A  L   M    +      ++          
Sbjct: 341 LVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACASLC 400

Query: 336 --YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI----V 389
             Y +   +  + Q+F K      V WN ++ G        EA+ LF+ M+ +++     
Sbjct: 401 YMYAKCNAVSYSFQVFAKTSKKRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHA 460

Query: 390 TWNTMIAGYA-----------------------------------QIRQMDDAVKIFEEM 414
           T+N++I  YA                                   +   +D A KIF+E+
Sbjct: 461 TFNSVIPAYAILADLKQVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFDEI 520

Query: 415 -GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQL 473
             K ++ + W+ LI+G+  +     A+ +F  M   G + +  T    L AC+H   +  
Sbjct: 521 PNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQPNEITFTSVLHACSHRGLVDD 580

Query: 474 GRQIHHLAIKSGYVNDLFVGN--SLITMYAKCGRIQNAELLFKDADPVDVIS-WNSLIAG 530
           G  +    I++ Y +     +   ++ +  + GR+  A  L K        S W +L+  
Sbjct: 581 GLTLFKYMIEN-YPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSMPFQQNHSIWGALLGA 639

Query: 531 YAINGNA----TEAIKLFE 545
             I+ N       A +LFE
Sbjct: 640 CLIHQNVELGEVAAERLFE 658



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 100/405 (24%), Positives = 190/405 (46%), Gaps = 44/405 (10%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTV-----TYNSMISAYAKNGRVNDARKLFEQMPQRN 76
           +   G    +E  IK+  ++ QKN +       N+++  Y++ G +++A  +F +  +++
Sbjct: 292 LPSCGYLKELELGIKV-HKLVQKNHLQEKIEVRNALVDMYSRCGGIDEASLVFAETKEKD 350

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWA-LMITC------YTRKGELE 125
           +++W SMI GY+ N   K A  L   M      P+  + A L+  C      Y +   + 
Sbjct: 351 VITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACASLCYMYAKCNAVS 410

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM----PSKNIVSWNSMLSGY 181
            + ++F    +K+ T  WNA+++G        EA  L  +M       N  ++NS++  Y
Sbjct: 411 YSFQVFA-KTSKKRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAY 469

Query: 182 TKNGE----MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP--EQNVVS 235
               +    M+L S    +     +     ++D Y +   LD A K F +IP  E++++ 
Sbjct: 470 AILADLKQVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIV 529

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMP 291
           W  +++GY  +G    A  LF+QM       N + + +++ A   RG +++   LF  M 
Sbjct: 530 WSVLIAGYGMHGHGETAVLLFNQMVHSGMQPNEITFTSVLHACSHRGLVDDGLTLFKYMI 589

Query: 292 ERNPVS-----WTTMIDGYVRIAKLDEARRLLDQMPY-KNIAAQTAMISGYV--QNKRMD 343
           E  P S     +T ++D   R  +LDEA  L+  MP+ +N +   A++   +  QN  + 
Sbjct: 590 ENYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSMPFQQNHSIWGALLGACLIHQNVELG 649

Query: 344 E--ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
           E  A ++F+ +       + ++   YA  GR  +A N+ R +++K
Sbjct: 650 EVAAERLFE-LEPESTGNYILLANIYAAVGRWKDAENV-RHIMSK 692



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 104/250 (41%), Gaps = 40/250 (16%)

Query: 470 ALQLGRQIHHLAIKSGYV---NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNS 526
           +L   + +H   I SG +   N + + + L   YA CG +  A  LF D     +  WN+
Sbjct: 94  SLNKTKILHGHTITSGLLHSPNFIHLPSHLAVSYAFCGCVPLARKLFDDLSDPSLFLWNA 153

Query: 527 LIAGYAINGNATEAIKLFEEMVMEG-VAPDPVTFIGVLSACS-----HVGLVDGGLKLFE 580
           +I  Y   G   +A+++F+ M+  G   PD  TF  V+ ACS     +VG++  G  L  
Sbjct: 154 IIKMYVDKGFHFDALRVFDSMICSGKFWPDKYTFPLVIKACSVMSMLNVGVLIHGRALVS 213

Query: 581 CMTE-VYAIEPLVEHYA------------------------CMIDLLSRAGRLDEAFEMV 615
             +  ++    L+  Y                          MI    + GR +EA  + 
Sbjct: 214 GFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVF 273

Query: 616 KGM---KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE--PQKTSCYALLSNMHAE 670
             M   +++P++    + L +C   + ++LG I V KL +     +K      L +M++ 
Sbjct: 274 NSMMDARVEPDSATIVSALPSCGYLKELELG-IKVHKLVQKNHLQEKIEVRNALVDMYSR 332

Query: 671 AGRWDEVEKV 680
            G  DE   V
Sbjct: 333 CGGIDEASLV 342


>gi|297596789|ref|NP_001043072.2| Os01g0374200 [Oryza sativa Japonica Group]
 gi|255673241|dbj|BAF04986.2| Os01g0374200 [Oryza sativa Japonica Group]
          Length = 629

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 190/557 (34%), Positives = 296/557 (53%), Gaps = 51/557 (9%)

Query: 227 KIPE--QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA 284
           KIP    NV    ++L+ Y + G + +ARR+FD MP RN  +W+ M+A Y      EEA 
Sbjct: 39  KIPSAVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAF 98

Query: 285 RLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI---------AAQTAMISG 335
            LF  M E  P   +  +   V  A       L+ +  +  I         + + ++++ 
Sbjct: 99  DLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTM 158

Query: 336 YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM------------ 383
           Y +   M  A  +F+     + + W+ MI GYAQ G  D A+++F QM            
Sbjct: 159 YAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTF 218

Query: 384 --------------VNKD-------------IVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
                         V K              I   + ++  YA+   + DA + F+++  
Sbjct: 219 VGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQL-Y 277

Query: 417 RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ 476
             + V W A++SG +QN  H +AL ++  M +EG     ST+A  L ACA +AAL+ G+Q
Sbjct: 278 EVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQ 337

Query: 477 IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGN 536
           +H   +K G      VG++L TMY+KCG +++   +F+     DVI+WNS+I+G++ NG 
Sbjct: 338 LHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGC 397

Query: 537 ATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYA 596
              A+ LFEEM MEG  PD +TFI +L ACSH+GLVD G + F  MT+ Y + P ++HYA
Sbjct: 398 GNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYA 457

Query: 597 CMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQ 656
           CM+D+LSRAG L EA + ++ + I     +W  +LGACR  ++  +G  A E+L EL   
Sbjct: 458 CMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTG 517

Query: 657 KTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCR 716
            +S Y LLSN++A   +W++VE+VR  M   G  K PGCSW+E+ +++H F+ G+ +   
Sbjct: 518 DSSAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELNSRVHVFVVGEQQHPE 577

Query: 717 TAEICNTLKTLAAQIRN 733
              I   L+ LA  +++
Sbjct: 578 AENINAQLRRLAKHMKD 594



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/412 (25%), Positives = 195/412 (47%), Gaps = 32/412 (7%)

Query: 34  AIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKV 93
           A KI S +S  N     S+++ Y K G V+DAR++F+ MPQRN  SW++M+AGY      
Sbjct: 37  ACKIPSAVS--NVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCS 94

Query: 94  KEARELFDKMF------RPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWN 144
           +EA +LF  M       + +  + A++       G L    ++  L+      +  +  N
Sbjct: 95  EEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLG-LLMGEQMHGLIVKDGLLDFVSVEN 153

Query: 145 AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS 204
           ++V  YAK G    A  + ++   +N ++W++M++GY +NGE   A   F  M       
Sbjct: 154 SLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTP 213

Query: 205 WNLMLDGYVEL-DDLDS------AWKFFQKIP-EQNVVSWVTMLSGYARNGRMLEARRLF 256
                 G +    DL +      A     K+  E  +     ++  YA+ G + +A+  F
Sbjct: 214 TEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGF 273

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVR----IAKLD 312
           DQ+   ++V W AM++ +VQ G+ EEA  L+  M +   +   + I   +R    IA L+
Sbjct: 274 DQLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALE 333

Query: 313 EARRLLDQMPYKNIA----AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYA 368
             ++L  Q+    +       +A+ + Y +   +++   +F +I   DV+ WN +I G++
Sbjct: 334 PGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFS 393

Query: 369 QCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
           Q G  + A++LF +M       D +T+  ++   + +  +D   + F  M K
Sbjct: 394 QNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTK 445



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 152/339 (44%), Gaps = 38/339 (11%)

Query: 14  YVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP 73
           +V  +N  +T   K+G +  A  +F    ++N++T+++MI+ YA+NG  + A  +F QM 
Sbjct: 148 FVSVENSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMH 207

Query: 74  QRNLVSWNSMIAGYLHNDK-------VKEARELFDKM-FRPDLFSWALMITCYTRKGELE 125
                       G L+           K+A  L  K+ F   ++  + ++  Y + G + 
Sbjct: 208 AAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIA 267

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
            A+E FD L  + D   W AMV+G+ + G + EA  L   M  + I+   S ++   +  
Sbjct: 268 DAKEGFDQL-YEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLR-- 324

Query: 186 EMHLASKFFEAME-----ERDVVSWNLMLDG---------YVELDDLDSAWKFFQKIPEQ 231
               A     A+E        +V + L L           Y +  +L+     F++IP++
Sbjct: 325 ----ACAGIAALEPGKQLHTQIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDR 380

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNA----MIAAYVQRGQIEEAARLF 287
           +V++W +++SG+++NG    A  LF++M +   +  N     ++ A    G ++     F
Sbjct: 381 DVIAWNSIISGFSQNGCGNGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYF 440

Query: 288 IEMPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQM 321
             M +   ++     +  M+D   R   L EA+  ++ +
Sbjct: 441 SLMTKDYGLTPRLDHYACMVDILSRAGMLKEAKDFIESI 479



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 12/160 (7%)

Query: 478 HHLAIK-SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGN 536
           H LA K    V++++V  SL+ MY K G + +A  +F      +  SW++++AGYA    
Sbjct: 34  HALACKIPSAVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKC 93

Query: 537 ATEAIKLFEEMVMEGVAPDPVTFI--GVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEH 594
           + EA  LF  +++E    +   F+   VLSA S    V  GL + E M  +   + L++ 
Sbjct: 94  SEEAFDLF-RLMLEECPSEKSEFVATAVLSAVS----VPLGLLMGEQMHGLIVKDGLLDF 148

Query: 595 YAC---MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
            +    ++ + ++AG +  AF + +  + + N+  W  ++
Sbjct: 149 VSVENSLVTMYAKAGCMGAAFHVFESSRER-NSITWSAMI 187


>gi|345505206|gb|AEN99827.1| chlororespiratory reduction 4, partial [Aethionema grandiflorum]
          Length = 594

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 188/538 (34%), Positives = 298/538 (55%), Gaps = 15/538 (2%)

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR 245
           E +L S  F A E  D   WN ++  Y    D   A   F  + E  V      LS   +
Sbjct: 52  EYYLCS--FSAGEGEDPYLWNAVIKSYSHGIDPRRALLLFCLMIENGVCVDKFSLSLVLK 109

Query: 246 NGRMLEARRLFDQMP--IRNVVAW------NAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
               LE  +   Q+   +R    W      N +I  Y++ G +  A ++F  MP+R+ VS
Sbjct: 110 ACSRLEFLKEGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVS 169

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMP--YKNIAAQTAMISGYVQNKR-MDEANQIFDKIGT 354
           + +MIDGYV+   +  A +L D MP   KN+ +  +MISGY Q    ++ A+++F ++  
Sbjct: 170 YNSMIDGYVKCGLMKSAHKLFDLMPREIKNLISWNSMISGYAQTADGLNTASKLFSEMPE 229

Query: 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            D++ WN MI G  + GR+++A  LF  M  +D+VTW TMI GYA++  +  A  +F++M
Sbjct: 230 KDLISWNSMINGCVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKSLFDQM 289

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK-KADHSTLACALSACAHLAALQL 473
             +R+ V+ N++++G++QN++H++AL+IF  M ++     D +TL   LSA A L  L  
Sbjct: 290 -HQRDVVACNSMMAGYVQNKYHMEALEIFNDMEKDSHLSPDETTLVIVLSAIAQLGRLSK 348

Query: 474 GRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
              +H   ++  +     +G +LI M++KCG IQ+A  +F+  +   +  WN++I G AI
Sbjct: 349 AMSMHVYIVEKRFPLGGKLGVALIDMHSKCGSIQHAISVFEGIENKSIDHWNAMIGGLAI 408

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVE 593
           +G    A  +  ++    + PD +TFIGVL+ACSH GLV  GL  FE M   + IEP ++
Sbjct: 409 HGLGELAFDMLMQIERCSIQPDXITFIGVLNACSHSGLVKEGLLCFELMRRKHXIEPRLQ 468

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653
           HY C++D+LSR+G ++ A  +++ M ++PN  IW + L AC  H+  + G +  + L   
Sbjct: 469 HYGCLVDVLSRSGSIELAKHLIEDMPMEPNDVIWRSFLSACSTHEEFETGELVAKHLILQ 528

Query: 654 EPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGD 711
                S Y LLSNM+A  G W +V +VR+ M+     K PGCSWIE+   +H F   D
Sbjct: 529 AGYNPSSYVLLSNMYASLGMWKDVRRVRMMMKQRKLHKIPGCSWIELDGNVHEFFVQD 586



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 97/290 (33%), Positives = 154/290 (53%), Gaps = 13/290 (4%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F QN  I    K G +  A ++F +M Q+++V+YNSMI  Y K G +  A KLF+ M
Sbjct: 134 SDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLMKSAHKLFDLM 193

Query: 73  PQ--RNLVSWNSMIAGYLHN-DKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARE 129
           P+  +NL+SWNSMI+GY    D +  A +LF +M   DL SW  MI    + G +E A+ 
Sbjct: 194 PREIKNLISWNSMISGYAQTADGLNTASKLFSEMPEKDLISWNSMINGCVKHGRIEDAKG 253

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           LFD++P + D   W  M+ GYAK+G  + AK L D M  +++V+ NSM++GY +N     
Sbjct: 254 LFDVMP-RRDVVTWATMIDGYAKLGFVHHAKSLFDQMHQRDVVACNSMMAGYVQNKYHME 312

Query: 190 ASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV----SWVTML 240
           A + F  ME+      D  +  ++L    +L  L  A      I E+         V ++
Sbjct: 313 ALEIFNDMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMHVYIVEKRFPLGGKLGVALI 372

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
             +++ G +  A  +F+ +  +++  WNAMI      G  E A  + +++
Sbjct: 373 DMHSKCGSIQHAISVFEGIENKSIDHWNAMIGGLAIHGLGELAFDMLMQI 422



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/268 (34%), Positives = 146/268 (54%), Gaps = 15/268 (5%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR--PD 107
           N +I  Y K G +  AR++F++MPQR+ VS+NSMI GY+    +K A +LFD M R   +
Sbjct: 140 NCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLMKSAHKLFDLMPREIKN 199

Query: 108 LFSWALMITCYTRKGE-LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           L SW  MI+ Y +  + L  A +LF  +P K D   WN+M+ G  K G   +AK L D M
Sbjct: 200 LISWNSMISGYAQTADGLNTASKLFSEMPEK-DLISWNSMINGCVKHGRIEDAKGLFDVM 258

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
           P +++V+W +M+ GY K G +H A   F+ M +RDVV+ N M+ GYV+      A + F 
Sbjct: 259 PRRDVVTWATMIDGYAKLGFVHHAKSLFDQMHQRDVVACNSMMAGYVQNKYHMEALEIFN 318

Query: 227 KIPEQNVVS-----WVTMLSGYARNGRMLEARRLF-----DQMPIRNVVAWNAMIAAYVQ 276
            + + + +S      V +LS  A+ GR+ +A  +       + P+   +   A+I  + +
Sbjct: 319 DMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMHVYIVEKRFPLGGKLG-VALIDMHSK 377

Query: 277 RGQIEEAARLFIEMPERNPVSWTTMIDG 304
            G I+ A  +F  +  ++   W  MI G
Sbjct: 378 CGSIQHAISVFEGIENKSIDHWNAMIGG 405



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/379 (26%), Positives = 192/379 (50%), Gaps = 20/379 (5%)

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           +L   N +I  YL    +  AR++FD+M + D  S+  MI  Y + G ++ A +LFDL+P
Sbjct: 135 DLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLMKSAHKLFDLMP 194

Query: 136 NK-EDTACWNAMVAGYAKIGN-YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
            + ++   WN+M++GYA+  +  N A KL   MP K+++SWNSM++G  K+G +  A   
Sbjct: 195 REIKNLISWNSMISGYAQTADGLNTASKLFSEMPEKDLISWNSMINGCVKHGRIEDAKGL 254

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEAR 253
           F+ M  RDVV+W  M+DGY +L  +  A   F ++ +++VV+  +M++GY +N   +EA 
Sbjct: 255 FDVMPRRDVVTWATMIDGYAKLGFVHHAKSLFDQMHQRDVVACNSMMAGYVQNKYHMEAL 314

Query: 254 RLFDQMPIRNVVAWNA-----MIAAYVQRGQIEEAARLFIEMPE-RNPVS---WTTMIDG 304
            +F+ M   + ++ +      +++A  Q G++ +A  + + + E R P+       +ID 
Sbjct: 315 EIFNDMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMHVYIVEKRFPLGGKLGVALIDM 374

Query: 305 YVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG----THDVVCW 360
           + +   +  A  + + +  K+I    AMI G   +   + A  +  +I       D + +
Sbjct: 375 HSKCGSIQHAISVFEGIENKSIDHWNAMIGGLAIHGLGELAFDMLMQIERCSIQPDXITF 434

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVT-----WNTMIAGYAQIRQMDDAVKIFEEMG 415
             ++   +  G + E +  F  M  K  +      +  ++   ++   ++ A  + E+M 
Sbjct: 435 IGVLNACSHSGLVKEGLLCFELMRRKHXIEPRLQHYGCLVDVLSRSGSIELAKHLIEDMP 494

Query: 416 KRRNTVSWNALISGFLQNE 434
              N V W + +S    +E
Sbjct: 495 MEPNDVIWRSFLSACSTHE 513



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 162/337 (48%), Gaps = 54/337 (16%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQ--KNTVTYNSMISAYAKNGR-VNDARKLFEQMPQR 75
           N  I    K G ++ A K+F  M +  KN +++NSMIS YA+    +N A KLF +MP++
Sbjct: 171 NSMIDGYVKCGLMKSAHKLFDLMPREIKNLISWNSMISGYAQTADGLNTASKLFSEMPEK 230

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           +L+SWNSMI G + + ++++A+ LFD M R D+ +WA MI  Y + G +  A+ LFD + 
Sbjct: 231 DLISWNSMINGCVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKSLFDQMH 290

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN-------------------- 175
            ++  AC N+M+AGY +   + EA ++ + M   + +S +                    
Sbjct: 291 QRDVVAC-NSMMAGYVQNKYHMEALEIFNDMEKDSHLSPDETTLVIVLSAIAQLGRLSKA 349

Query: 176 --------------------SMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
                               +++  ++K G +  A   FE +E + +  WN M+ G    
Sbjct: 350 MSMHVYIVEKRFPLGGKLGVALIDMHSKCGSIQHAISVFEGIENKSIDHWNAMIGGLAIH 409

Query: 216 DDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA----- 266
              + A+    +I     + + ++++ +L+  + +G + E    F+ M  ++ +      
Sbjct: 410 GLGELAFDMLMQIERCSIQPDXITFIGVLNACSHSGLVKEGLLCFELMRRKHXIEPRLQH 469

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMI 302
           +  ++    + G IE A  L  +MP E N V W + +
Sbjct: 470 YGCLVDVLSRSGSIELAKHLIEDMPMEPNDVIWRSFL 506


>gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
 gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
          Length = 500

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 181/482 (37%), Positives = 275/482 (57%), Gaps = 30/482 (6%)

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKL 311
            +Q    N V+W + I    + G++ EAA+ F +M     E N +++  ++ G       
Sbjct: 28  LNQSTSENTVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIAILSGCGDFPSG 87

Query: 312 DEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
            EA  L D            ++ GY     +D  N +   +GT        +I  Y++ G
Sbjct: 88  SEA--LGD------------LLHGYACKLGLDR-NHVM--VGT-------AIIGMYSKRG 123

Query: 372 RMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFL 431
           R+ +A  +F  M +K+ VTWNTMI GY +  Q+D+A K+F++M   R+ +SW A+I+GF+
Sbjct: 124 RVKKARCVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKM-PERDLISWTAMINGFV 182

Query: 432 QNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLF 491
              FH +AL  F  M   G K D+  +  AL+AC +L AL  G  +H   +   + N++ 
Sbjct: 183 NKGFHEEALAWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVR 242

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
           V NSLI +Y +CG ++ A  +F   +   V+SWNS+I G+A NGNA E++  F +M  E 
Sbjct: 243 VSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEER 302

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
             PD VTF G L+ACSHVGLV+ GL+ F+ M   Y I P +EHY C++DL SRAGRL++A
Sbjct: 303 FKPDAVTFTGALTACSHVGLVEEGLRYFQIMISDYRISPRIEHYGCLVDLYSRAGRLEDA 362

Query: 612 FEMVKGMKIKPNAGIWGTLLGACRMH-QNIKLGRIAVEKLSELEPQKTSCYALLSNMHAE 670
            ++V+ M +KPN  + G+LL ACR H  N  L    ++ L++L  +  S Y +LSNM+A 
Sbjct: 363 LKLVQSMPMKPNEVVIGSLLAACRNHGNNTVLAEKLMKHLTDLNVKSHSNYVILSNMYAA 422

Query: 671 AGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQ 730
            G+W+   K+R  M+G G +KQPG S IE+ +  H F++GD     T  IC  LK +++ 
Sbjct: 423 DGKWEGASKMRRKMKGLGLKKQPGFSSIEIDDCTHVFMAGDSAHVETTNICEVLKLISSN 482

Query: 731 IR 732
           +R
Sbjct: 483 LR 484



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 143/275 (52%), Gaps = 17/275 (6%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           I    K GRV++A  +F  M  KN+VT+N+MI  Y ++G+V++A K+F++MP+R+L+SW 
Sbjct: 116 IGMYSKRGRVKKARCVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWT 175

Query: 82  SMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPN- 136
           +MI G+++    +EA   F +M     +PD  +    +   T  G L     +   + + 
Sbjct: 176 AMINGFVNKGFHEEALAWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQ 235

Query: 137 --KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
             K +    N+++  Y + G    A+++ D M  + +VSWNS++ G+  NG  H +  +F
Sbjct: 236 DFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYF 295

Query: 195 EAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYAR 245
             M+E     D V++   L     +  ++   ++FQ +     +S     +  ++  Y+R
Sbjct: 296 RKMQEERFKPDAVTFTGALTACSHVGLVEEGLRYFQIMISDYRISPRIEHYGCLVDLYSR 355

Query: 246 NGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQ 279
            GR+ +A +L   MP++ N V   +++AA    G 
Sbjct: 356 AGRLEDALKLVQSMPMKPNEVVIGSLLAACRNHGN 390



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 102/404 (25%), Positives = 186/404 (46%), Gaps = 55/404 (13%)

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGY 212
           N   + L+   S+N VSW S ++  T+NG +  A+K F  M     E + +++  +L G 
Sbjct: 22  NPKIQRLNQSTSENTVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIAILSGC 81

Query: 213 VE-------LDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
            +       L DL   +     +   +V+    ++  Y++ GR+ +AR +FD M  +N V
Sbjct: 82  GDFPSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRVKKARCVFDYMEDKNSV 141

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
            WN MI  Y++ GQ++ AA++F +MPER+ +SWT MI+G+V     +EA     +M    
Sbjct: 142 TWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFREMQISG 201

Query: 326 --------IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAI 377
                   IAA  A  +    +  +     +  +   ++V   N +I  Y +CG ++ A 
Sbjct: 202 VKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFAR 261

Query: 378 NLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHL 437
            +F +M  + +V+WN++I G+A      +++  F +M + R                   
Sbjct: 262 QVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEER------------------- 302

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG-NSL 496
                         K D  T   AL+AC+H+  ++ G +   + I    ++        L
Sbjct: 303 -------------FKPDAVTFTGALTACSHVGLVEEGLRYFQIMISDYRISPRIEHYGCL 349

Query: 497 ITMYAKCGRIQNAELLFKD--ADPVDVISWNSLIAGYAINGNAT 538
           + +Y++ GR+++A  L +     P +V+   SL+A    +GN T
Sbjct: 350 VDLYSRAGRLEDALKLVQSMPMKPNEVV-IGSLLAACRNHGNNT 392



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 174/374 (46%), Gaps = 54/374 (14%)

Query: 35  IKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP----QRNLVSWNSMIAGYLHN 90
           I+  +Q + +NTV++ S I+   +NGR+ +A K F  M     + N +++ ++++G    
Sbjct: 25  IQRLNQSTSENTVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIAILSGC--G 82

Query: 91  DKVKEARELFDKMF---------RPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTA 141
           D    +  L D +          R  +     +I  Y+++G ++KAR +FD + +K ++ 
Sbjct: 83  DFPSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRVKKARCVFDYMEDK-NSV 141

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME--- 198
            WN M+ GY + G  + A K+ D MP ++++SW +M++G+   G    A  +F  M+   
Sbjct: 142 TWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFREMQISG 201

Query: 199 -ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARNGRMLEAR 253
            + D V+    L+    L  L       + +  Q    NV    +++  Y R G +  AR
Sbjct: 202 VKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFAR 261

Query: 254 RLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIA 309
           ++FD+M  R VV+WN++I  +   G   E+   F +M E     + V++T  +     + 
Sbjct: 262 QVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEERFKPDAVTFTGALTACSHVG 321

Query: 310 KLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ 369
            ++E  R               MIS Y  + R++                +  ++  Y++
Sbjct: 322 LVEEGLRYFQ-----------IMISDYRISPRIEH---------------YGCLVDLYSR 355

Query: 370 CGRMDEAINLFRQM 383
            GR+++A+ L + M
Sbjct: 356 AGRLEDALKLVQSM 369



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 13/194 (6%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDA----RKLFEQMP 73
            N  I    + G VE A ++F +M ++  V++NS+I  +A NG  +++    RK+ E+  
Sbjct: 244 SNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEERF 303

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELF-----DKMFRPDLFSWALMITCYTRKGELEKAR 128
           + + V++   +    H   V+E    F     D    P +  +  ++  Y+R G LE A 
Sbjct: 304 KPDAVTFTGALTACSHVGLVEEGLRYFQIMISDYRISPRIEHYGCLVDLYSRAGRLEDAL 363

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNE-AKKLLDAMPSKNIVSWNS--MLSG-YTKN 184
           +L   +P K +     +++A     GN    A+KL+  +   N+ S ++  +LS  Y  +
Sbjct: 364 KLVQSMPMKPNEVVIGSLLAACRNHGNNTVLAEKLMKHLTDLNVKSHSNYVILSNMYAAD 423

Query: 185 GEMHLASKFFEAME 198
           G+   ASK    M+
Sbjct: 424 GKWEGASKMRRKMK 437


>gi|345505204|gb|AEN99826.1| chlororespiratory reduction 4, partial [Aethionema cordifolium]
          Length = 587

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 184/529 (34%), Positives = 297/529 (56%), Gaps = 17/529 (3%)

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRM 249
           F   E  D   WN ++  +    D   A  +F  + E  V     S   +L   +R G +
Sbjct: 56  FAHGEVEDPFLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFV 115

Query: 250 LEARRLFDQMPIRNVVAW------NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMID 303
            E  ++   +  R    W      N +I  Y++ G +  A ++F  MP+R+ VS+ +MID
Sbjct: 116 QEGMQIHGFL--RKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMID 173

Query: 304 GYVRIAKLDEARRLLDQMP--YKNIAAQTAMISGYVQNKR-MDEANQIFDKIGTHDVVCW 360
           GYV+   +  AR L D MP   KN+ +  +MISGY Q    ++ A+++F ++   D++ W
Sbjct: 174 GYVKCGLIGSARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISW 233

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
           N +I GY + GRM++A +LF  M  +D+VTW TMI GYA++  +  A  +F++M   R+ 
Sbjct: 234 NSLIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQM-PHRDV 292

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGK-KADHSTLACALSACAHLAALQLGRQIHH 479
           V++N++++G++QN++H++AL+IF  M ++     D +TL   LSA A L  L     ++ 
Sbjct: 293 VAYNSMMAGYVQNKYHMEALEIFNNMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMNK 352

Query: 480 LAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATE 539
             ++  +     +G +LI M++KCG IQ A  +F+      +  WN++I G AI+G+   
Sbjct: 353 YIVEKSFPLGGKLGVALIDMHSKCGSIQQAISVFEGIKNKSIDHWNAMIGGLAIHGHGEL 412

Query: 540 AIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMI 599
           A  +  ++    + PD +TFIGVL+ACSH GLV  GL  FE M   + IEP ++HY C++
Sbjct: 413 AFDMLMQIERCSIKPDDITFIGVLNACSHSGLVKEGLLSFELMRRKHKIEPRLQHYGCIV 472

Query: 600 DLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTS 659
           D+LSR+G ++ A  +++ M ++PN  IW T L ACR  +  ++G +  + L        S
Sbjct: 473 DILSRSGSIELAKHLIEDMPMEPNDVIWRTFLIACRNRKEFEIGELVAKHLILQAGYNPS 532

Query: 660 CYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFL 708
            Y LLSNM+A  G W +V +VR+ M+     K PGCSWIE+   +H F 
Sbjct: 533 SYVLLSNMYASLGMWKDVRRVRMMMKQRKLHKIPGCSWIELDGNVHEFF 581



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 135/437 (30%), Positives = 218/437 (49%), Gaps = 77/437 (17%)

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM 166
           DLF    +I  Y + G L  AR++FD +P + D+  +N+M+ GY K G    A++L D M
Sbjct: 133 DLFLQNCLIGLYLKCGCLGFARQIFDRMPQR-DSVSYNSMIDGYVKCGLIGSARELFDLM 191

Query: 167 PS--KNIVSWNSMLSGYTKNGE-MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWK 223
           P   KN++SWNSM+SGY +  + +++ASK F  M E+D++SWN ++DGYV+   ++ A  
Sbjct: 192 PKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKHGRMEDAKD 251

Query: 224 FFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEA 283
            F  +P ++VV+W TM+ GYA+ G + +A+ LFDQMP R+VVA+N+M+A YVQ     EA
Sbjct: 252 LFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEA 311

Query: 284 ARLFIEMPERNPVS--WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKR 341
             +F  M + + +S   TT++     IA+L    + +    Y  I  ++  + G      
Sbjct: 312 LEIFNNMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMNKY--IVEKSFPLGG------ 363

Query: 342 MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQI 401
                    K+G         +I  +++CG + +AI++F  + NK I  WN MI G A  
Sbjct: 364 ---------KLGV-------ALIDMHSKCGSIQQAISVFEGIKNKSIDHWNAMIGGLA-- 405

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
                                    I G    E   D L   + + +   K D  T    
Sbjct: 406 -------------------------IHG--HGELAFDML---MQIERCSIKPDDITFIGV 435

Query: 462 LSACAH-------LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
           L+AC+H       L + +L R+ H +  +  +         ++ + ++ G I+ A+ L +
Sbjct: 436 LNACSHSGLVKEGLLSFELMRRKHKIEPRLQHY------GCIVDILSRSGSIELAKHLIE 489

Query: 515 D--ADPVDVISWNSLIA 529
           D   +P DVI    LIA
Sbjct: 490 DMPMEPNDVIWRTFLIA 506



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/290 (34%), Positives = 163/290 (56%), Gaps = 13/290 (4%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +F QN  I    K G +  A +IF +M Q+++V+YNSMI  Y K G +  AR+LF+ M
Sbjct: 132 SDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGSARELFDLM 191

Query: 73  PQ--RNLVSWNSMIAGYLH-NDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARE 129
           P+  +NL+SWNSMI+GY   +D V  A +LF +M   DL SW  +I  Y + G +E A++
Sbjct: 192 PKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKHGRMEDAKD 251

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189
           LF ++P + D   W  M+ GYAK+G  ++AK L D MP +++V++NSM++GY +N     
Sbjct: 252 LFYVMP-RRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYHME 310

Query: 190 ASKFFEAMEER-----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV----SWVTML 240
           A + F  ME+      D  +  ++L    +L  L  A    + I E++        V ++
Sbjct: 311 ALEIFNNMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMNKYIVEKSFPLGGKLGVALI 370

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
             +++ G + +A  +F+ +  +++  WNAMI      G  E A  + +++
Sbjct: 371 DMHSKCGSIQQAISVFEGIKNKSIDHWNAMIGGLAIHGHGELAFDMLMQI 420



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/293 (32%), Positives = 156/293 (53%), Gaps = 19/293 (6%)

Query: 29  GRVEEAIKIFSQMSQ----KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMI 84
           G V+E ++I   + +     +    N +I  Y K G +  AR++F++MPQR+ VS+NSMI
Sbjct: 113 GFVQEGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMI 172

Query: 85  AGYLHNDKVKEARELFDKMFR--PDLFSWALMITCYTRKGE-LEKARELFDLLPNKEDTA 141
            GY+    +  ARELFD M +   +L SW  MI+ Y +  + +  A +LF  +P K D  
Sbjct: 173 DGYVKCGLIGSARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEK-DLI 231

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
            WN+++ GY K G   +AK L   MP +++V+W +M+ GY K G +H A   F+ M  RD
Sbjct: 232 SWNSLIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRD 291

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEARRLF 256
           VV++N M+ GYV+      A + F  + + + +S      V +LS  A+ GR+ +A  + 
Sbjct: 292 VVAYNSMMAGYVQNKYHMEALEIFNNMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMN 351

Query: 257 -----DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDG 304
                   P+   +   A+I  + + G I++A  +F  +  ++   W  MI G
Sbjct: 352 KYIVEKSFPLGGKLG-VALIDMHSKCGSIQQAISVFEGIKNKSIDHWNAMIGG 403



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 164/337 (48%), Gaps = 54/337 (16%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQ--KNTVTYNSMISAYAKNGR-VNDARKLFEQMPQR 75
           N  I    K G +  A ++F  M +  KN +++NSMIS YA+    VN A KLF +MP++
Sbjct: 169 NSMIDGYVKCGLIGSARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEK 228

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
           +L+SWNS+I GY+ + ++++A++LF  M R D+ +WA MI  Y + G + KA+ LFD +P
Sbjct: 229 DLISWNSLIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMP 288

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP---------------------------- 167
           ++ D   +N+M+AGY +   + EA ++ + M                             
Sbjct: 289 HR-DVVAYNSMMAGYVQNKYHMEALEIFNNMEKDSHLSPDETTLVIVLSAIAQLGRLSKA 347

Query: 168 ---SKNIVSWNSMLSG---------YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
              +K IV  +  L G         ++K G +  A   FE ++ + +  WN M+ G    
Sbjct: 348 MSMNKYIVEKSFPLGGKLGVALIDMHSKCGSIQQAISVFEGIKNKSIDHWNAMIGGLAIH 407

Query: 216 DDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA----- 266
              + A+    +I   ++    ++++ +L+  + +G + E    F+ M  ++ +      
Sbjct: 408 GHGELAFDMLMQIERCSIKPDDITFIGVLNACSHSGLVKEGLLSFELMRRKHKIEPRLQH 467

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMI 302
           +  ++    + G IE A  L  +MP E N V W T +
Sbjct: 468 YGCIVDILSRSGSIELAKHLIEDMPMEPNDVIWRTFL 504



 Score = 42.7 bits (99), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 11/114 (9%)

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL-----------FKDADPVDVISW 524
           QIH   IK+G++ +  +   ++  +A   R   AE             F   +  D   W
Sbjct: 8   QIHARLIKTGFIQNSNLTTRIVLAFAASRRPYLAEFARCVFQNYHSCSFAHGEVEDPFLW 67

Query: 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
           N++I  ++   +   A+  F  M+  GV+ D  +   VL ACS +G V  G+++
Sbjct: 68  NAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQI 121


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 191/612 (31%), Positives = 318/612 (51%), Gaps = 45/612 (7%)

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM- 197
           D  C N ++  Y K+G    A++L D MP +N+VS+ +++  + + G+   A+  F  + 
Sbjct: 95  DLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLR 154

Query: 198 -EERDVVSWNL--MLDGYVELDDL-------DSAWKFFQKIPEQNVVSWVTMLSGYARNG 247
            E  +V  + L  ML   + +D           AWK      + N      ++  Y+   
Sbjct: 155 WEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGH---DHNAFVGSGLIDAYSLCS 211

Query: 248 RMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARL--------------------F 287
            + +A  +F+ +  ++ V W AM++ Y +    E A R                      
Sbjct: 212 LVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRCAQSCSLLAISCARQGIHGCAI 271

Query: 288 IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347
             + +  P     ++D Y +   + +AR   + +PY ++   + MIS Y Q+ + ++A +
Sbjct: 272 KTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFE 331

Query: 348 IFDKIGTHDVVCWNVMIKGYAQ-CGRMDEAINLFRQMVN--------KDIVTWNTMIAGY 398
           +F ++    V+     +    Q C  M + ++  +Q+ N         D+   N ++  Y
Sbjct: 332 LFLRLMRSSVLPNEYSLSSVLQACTNMVQ-LDFGKQIHNHAIKIGHESDLFVGNALMDFY 390

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           A+   MD ++KIF  + +  N VSWN ++ GF Q+    +AL +F  M          T 
Sbjct: 391 AKCNDMDSSLKIFSSL-RDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTY 449

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
           +  L ACA  A+++   QIH    KS + ND  +GNSLI  YAKCG I++A  +F+    
Sbjct: 450 SSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLME 509

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
            D+ISWN++I+GYA++G A +A++LF+ M    V  + +TF+ +LS C   GLV+ GL L
Sbjct: 510 RDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSL 569

Query: 579 FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQ 638
           F+ M   + I+P +EHY C++ LL RAGRL++A + +  +   P+A +W  LL +C +H+
Sbjct: 570 FDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHK 629

Query: 639 NIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWI 698
           N+ LGR + EK+ E+EPQ  + Y LLSNM+A AG  D+V  +R SM   G +K PG SW+
Sbjct: 630 NVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWV 689

Query: 699 EVKNQIHTFLSG 710
           E+K +IH F  G
Sbjct: 690 EIKGEIHAFSVG 701



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 117/567 (20%), Positives = 240/567 (42%), Gaps = 69/567 (12%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           N +++ Y K G +  AR+LF++MP+RN+VS+ +++  +      + A  LF ++      
Sbjct: 100 NVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHE 159

Query: 106 PDLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNEAKKL 162
            + F    M+           A  +      L +  +    + ++  Y+     ++A+ +
Sbjct: 160 VNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHV 219

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAW 222
            + +  K+ V W +M+S Y++N         F   +   +++ +    G         A 
Sbjct: 220 FNGIVRKDAVVWTAMVSCYSEND---CPENAFRCAQSCSLLAISCARQGI-----HGCAI 271

Query: 223 KFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEE 282
           K      E +V     +L  YA+ G + +AR  F+ +P  +V+  + MI+ Y Q  Q E+
Sbjct: 272 KTLNDT-EPHVGG--ALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQ 328

Query: 283 AARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQM----PYKNIAAQTAMIS 334
           A  LF+ +       N  S ++++     + +LD  +++ +         ++    A++ 
Sbjct: 329 AFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMD 388

Query: 335 GYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----------- 383
            Y +   MD + +IF  +   + V WN ++ G++Q G  +EA+++F +M           
Sbjct: 389 FYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVT 448

Query: 384 ----------------------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMG 415
                                        N D V  N++I  YA+   + DA+K+F+ + 
Sbjct: 449 YSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHL- 507

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
             R+ +SWNA+ISG+  +    DAL++F  M +   +++  T    LS C     +  G 
Sbjct: 508 MERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGL 567

Query: 476 QIH-HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV-DVISWNSLIAGYAI 533
            +   + I  G    +     ++ +  + GR+ +A     D       + W +L++   I
Sbjct: 568 SLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCII 627

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFI 560
           + N     +   E ++E    D  T++
Sbjct: 628 HKNVALG-RFSAEKILEIEPQDETTYV 653



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/438 (20%), Positives = 196/438 (44%), Gaps = 64/438 (14%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           N    + +I AY+    V+DA  +F  + +++ V W +M++ Y  ND  + A       F
Sbjct: 196 NAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENA-------F 248

Query: 105 RPDLFSWALMITC---------------------------YTRKGELEKARELFDLLPNK 137
           R       L I+C                           Y + G+++ AR  F+++P  
Sbjct: 249 RCAQSCSLLAISCARQGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIP-Y 307

Query: 138 EDTACWNAMVAGYAKIGNYNEAK-----KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
           +D    + M++ YA+  N NE       +L+ +    N  S +S+L   T   ++    +
Sbjct: 308 DDVILLSFMISRYAQ-SNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQ 366

Query: 193 F----FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGR 248
                 +   E D+   N ++D Y + +D+DS+ K F  + + N VSW T++ G++++G 
Sbjct: 367 IHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGL 426

Query: 249 MLEARRLF-----DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE----RNPVSWT 299
             EA  +F      QMP   V  +++++ A      I  A ++   + +     + V   
Sbjct: 427 GEEALSVFCEMQAAQMPCTQVT-YSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGN 485

Query: 300 TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV-- 357
           ++ID Y +   + +A ++   +  ++I +  A+ISGY  + +  +A ++FD++   +V  
Sbjct: 486 SLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVES 545

Query: 358 --VCWNVMIKGYAQCGRMDEAINLFRQM-----VNKDIVTWNTMIAGYAQIRQMDDAVKI 410
             + +  ++      G ++  ++LF  M     +   +  +  ++    +  +++DA++ 
Sbjct: 546 NDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQF 605

Query: 411 FEEMGKRRNTVSWNALIS 428
             ++    + + W AL+S
Sbjct: 606 IGDIPSAPSAMVWRALLS 623



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 180/395 (45%), Gaps = 61/395 (15%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----P 106
           +++  YAK G + DAR  FE +P  +++  + MI+ Y  +++ ++A ELF ++ R    P
Sbjct: 284 ALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLP 343

Query: 107 DLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
           + +S + ++   T   +L+  +++ +    + ++ D    NA++  YAK  + + + K+ 
Sbjct: 344 NEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIF 403

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME------------------------- 198
            ++   N VSWN+++ G++++G    A   F  M+                         
Sbjct: 404 SSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIR 463

Query: 199 --------------ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYA 244
                           D V  N ++D Y +   +  A K FQ + E++++SW  ++SGYA
Sbjct: 464 HAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYA 523

Query: 245 RNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS--- 297
            +G+  +A  LFD+M   NV    + + A+++     G +     LF  M   + +    
Sbjct: 524 LHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPSM 583

Query: 298 --WTTMIDGYVRIAKLDEARRLLDQMPYKNIA-AQTAMISGYVQNKRMD----EANQIFD 350
             +T ++    R  +L++A + +  +P    A    A++S  + +K +      A +I +
Sbjct: 584 EHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILE 643

Query: 351 KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
            I   D   + ++   YA  G +D+   L + M N
Sbjct: 644 -IEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRN 677



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 98/193 (50%), Gaps = 24/193 (12%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           +TV  NS+I  YAK G + DA K+F+ + +R+++SWN++I+GY  + +  +A ELFD+M 
Sbjct: 480 DTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMN 539

Query: 105 RPDL------FSWALMITCYTRKGELEKARELFDLL-------PNKEDTACWNAMVAGYA 151
           + ++      F   L + C T  G +     LFD +       P+ E   C   +V    
Sbjct: 540 KSNVESNDITFVALLSVCCST--GLVNHGLSLFDSMRIDHGIKPSMEHYTC---IVRLLG 594

Query: 152 KIGNYNEAKKLLDAMPS-KNIVSWNSMLSGYTKNGEMHL----ASKFFEAMEERDVVSWN 206
           + G  N+A + +  +PS  + + W ++LS    +  + L    A K  E +E +D  ++ 
Sbjct: 595 RAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILE-IEPQDETTYV 653

Query: 207 LMLDGYVELDDLD 219
           L+ + Y     LD
Sbjct: 654 LLSNMYAAAGSLD 666



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 153/360 (42%), Gaps = 57/360 (15%)

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIF 411
           +G  D+ C NV++  Y + G +  A  LF +M  +++V++ T++  +AQ    + A  +F
Sbjct: 91  VGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALF 150

Query: 412 EEM---GKRRN------------------------TVSW------NALISGFLQNEFHL- 437
             +   G   N                        + +W      NA +   L + + L 
Sbjct: 151 RRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLC 210

Query: 438 ----DALKIFVLMTQEGKKADHSTLAC------------ALSACAHLAALQLGRQ-IHHL 480
               DA  +F  + ++      + ++C               +C+ L A+   RQ IH  
Sbjct: 211 SLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRCAQSCS-LLAISCARQGIHGC 269

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEA 540
           AIK+    +  VG +L+ MYAKCG I++A L F+     DVI  + +I+ YA +    +A
Sbjct: 270 AIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQA 329

Query: 541 IKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMID 600
            +LF  ++   V P+  +   VL AC+++  +D G ++     ++     L    A M D
Sbjct: 330 FELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALM-D 388

Query: 601 LLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSC 660
             ++   +D + ++   ++   N   W T++          LG  A+    E++  +  C
Sbjct: 389 FYAKCNDMDSSLKIFSSLR-DANEVSWNTIVVG---FSQSGLGEEALSVFCEMQAAQMPC 444



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/302 (19%), Positives = 136/302 (45%), Gaps = 26/302 (8%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL- 108
           N+++  YAK   ++ + K+F  +   N VSWN+++ G+  +   +EA  +F +M    + 
Sbjct: 384 NALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMP 443

Query: 109 ---FSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKL 162
               +++ ++        +  A ++   +       DT   N+++  YAK G   +A K+
Sbjct: 444 CTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKV 503

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDL 218
              +  ++I+SWN+++SGY  +G+   A + F+ M + +V    +++  +L        +
Sbjct: 504 FQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLV 563

Query: 219 DSAWKFFQKI-------PEQNVVSWVTMLSGYARNGRMLEARRLFDQMP-IRNVVAWNAM 270
           +     F  +       P     + +  L G  R GR+ +A +    +P   + + W A+
Sbjct: 564 NHGLSLFDSMRIDHGIKPSMEHYTCIVRLLG--RAGRLNDALQFIGDIPSAPSAMVWRAL 621

Query: 271 IAAYVQRGQI---EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
           +++ +    +     +A   +E+  ++  ++  + + Y     LD+   L   M  +NI 
Sbjct: 622 LSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSM--RNIG 679

Query: 328 AQ 329
            +
Sbjct: 680 VR 681



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 81/163 (49%), Gaps = 15/163 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  I    K G + +A+K+F  + +++ +++N++IS YA +G+  DA +LF++M + N+ 
Sbjct: 485 NSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVE 544

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARE 129
              +++ ++++       V     LFD M      +P +  +  ++    R G L  A +
Sbjct: 545 SNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQ 604

Query: 130 LFDLLPNKEDTACWNAMVAGY-----AKIGNYNEAKKLLDAMP 167
               +P+      W A+++         +G ++ A+K+L+  P
Sbjct: 605 FIGDIPSAPSAMVWRALLSSCIIHKNVALGRFS-AEKILEIEP 646


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 171/510 (33%), Positives = 291/510 (57%), Gaps = 15/510 (2%)

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN-- 294
           V ++  YA    +  AR++FD++P RNV+  N MI +YV  G   E  ++F  M   N  
Sbjct: 78  VKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVR 137

Query: 295 PVSWT--TMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQI 348
           P  +T   ++        +   R++        +++       ++S Y +   + EA  +
Sbjct: 138 PDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLV 197

Query: 349 FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQM 404
            D++   DVV WN ++ GYAQ  R D+A+ + R+M    ++ D  T  +++   +     
Sbjct: 198 LDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTE 257

Query: 405 DD--AVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
           +      +F +MGK+ + VSWN +I  +++N   ++A++++  M  +G + D  ++   L
Sbjct: 258 NVMYVKDMFFKMGKK-SLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVL 316

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
            AC   +AL LG++IH    +   + +L + N+LI MYAKCG ++ A  +F++    DV+
Sbjct: 317 PACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVV 376

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           SW ++I+ Y  +G   +A+ LF ++   G+ PD + F+  L+ACSH GL++ G   F+ M
Sbjct: 377 SWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLM 436

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKL 642
           T+ Y I P +EH ACM+DLL RAG++ EA+  ++ M ++PN  +WG LLGACR+H +  +
Sbjct: 437 TDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDI 496

Query: 643 GRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKN 702
           G +A +KL +L P+++  Y LLSN++A+AGRW+EV  +R  M+  G +K PG S +EV  
Sbjct: 497 GLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNR 556

Query: 703 QIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            IHTFL GD    ++ EI   L  L  +++
Sbjct: 557 IIHTFLVGDRSHPQSDEIYRELDVLVKKMK 586



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 181/383 (47%), Gaps = 46/383 (12%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPD 107
           ++ AYA    V  ARK+F+++P+RN++  N MI  Y++N    E  ++F  M     RPD
Sbjct: 80  LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139

Query: 108 LFSWALMITCYTRKGELEKARELFDLLPNKEDTACW---NAMVAGYAKIGNYNEAKKLLD 164
            +++  ++   +  G +   R++         ++     N +V+ Y K G  +EA+ +LD
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 199

Query: 165 AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE-RDVVSWNLMLDGYVELDDLDSAWK 223
            M  +++VSWNS++ GY +N       +F +A+E  R++ S  +  D       + S   
Sbjct: 200 EMSRRDVVSWNSLVVGYAQN------QRFDDALEVCREMESVKISHDAGT----MASLLP 249

Query: 224 FFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEA 283
                  +NV+        Y ++        +F +M  +++V+WN MI  Y++     EA
Sbjct: 250 AVSNTTTENVM--------YVKD--------MFFKMGKKSLVSWNVMIGVYMKNAMPVEA 293

Query: 284 ARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK----NIAAQTAMISG 335
             L+  M     E + VS T+++      + L   +++   +  K    N+  + A+I  
Sbjct: 294 VELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDM 353

Query: 336 YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVTW 391
           Y +   +++A  +F+ + + DVV W  MI  Y   GR  +A+ LF ++ +     D + +
Sbjct: 354 YAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAF 413

Query: 392 NTMIAGYAQIRQMDDAVKIFEEM 414
            T +A  +    +++    F+ M
Sbjct: 414 VTTLAACSHAGLLEEGRSCFKLM 436



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 151/347 (43%), Gaps = 80/347 (23%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDA------- 65
           S +F  N  ++  GK G + EA  +  +MS+++ V++NS++  YA+N R +DA       
Sbjct: 173 STLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREM 232

Query: 66  ------------------------------RKLFEQMPQRNLVSWNSMIAGYLHNDKVKE 95
                                         + +F +M +++LVSWN MI  Y+ N    E
Sbjct: 233 ESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVE 292

Query: 96  ARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYA 151
           A EL+ +M    F PD    A+ IT                +LP   DT+   A+  G  
Sbjct: 293 AVELYSRMEADGFEPD----AVSIT---------------SVLPACGDTS---ALSLG-K 329

Query: 152 KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
           KI  Y E KKL+      N++  N+++  Y K G +  A   FE M+ RDVVSW  M+  
Sbjct: 330 KIHGYIERKKLI-----PNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISA 384

Query: 212 YVELDDLDSAWKFFQKIPEQNVV----SWVTMLSGYARNGRMLEARRLF----DQMPIRN 263
           Y        A   F K+ +  +V    ++VT L+  +  G + E R  F    D   I  
Sbjct: 385 YGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITP 444

Query: 264 VVAWNAMIAAYVQR-GQIEEAARLFIEMP-ERNPVSWTTMIDGYVRI 308
            +   A +   + R G+++EA R   +M  E N   W  ++ G  R+
Sbjct: 445 RLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALL-GACRV 490



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 90/423 (21%), Positives = 182/423 (43%), Gaps = 53/423 (12%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHN 90
           V  A K+F ++ ++N +  N MI +Y  NG   +  K+F  M   N+             
Sbjct: 90  VASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNV------------- 136

Query: 91  DKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACW---NAMV 147
                         RPD +++  ++   +  G +   R++         ++     N +V
Sbjct: 137 --------------RPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLV 182

Query: 148 AGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVV 203
           + Y K G  +EA+ +LD M  +++VSWNS++ GY +N     A +    ME      D  
Sbjct: 183 SMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAG 242

Query: 204 SWNLMLDGY--VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
           +   +L        +++      F K+ ++++VSW  M+  Y +N   +EA  L+ +M  
Sbjct: 243 TMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEA 302

Query: 262 R----NVVAWNAMIAAYVQRGQIEEAARL--FIEMPERNP--VSWTTMIDGYVRIAKLDE 313
                + V+  +++ A      +    ++  +IE  +  P  +    +ID Y +   L++
Sbjct: 303 DGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEK 362

Query: 314 ARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG----THDVVCWNVMIKGYAQ 369
           AR + + M  +++ + TAMIS Y  + R  +A  +F K+       D + +   +   + 
Sbjct: 363 ARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSH 422

Query: 370 CGRMDEAINLFRQMVNKDIVT-----WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
            G ++E  + F+ M +   +T        M+    +  ++ +A +  ++M    N   W 
Sbjct: 423 AGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWG 482

Query: 425 ALI 427
           AL+
Sbjct: 483 ALL 485



 Score = 64.3 bits (155), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 49/219 (22%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           N +  N++I  YAK G +  AR +FE M  R++VSW +MI+ Y  + +  +A  LF K+ 
Sbjct: 343 NLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQ 402

Query: 104 ---FRPDLFSWALMITCYTRKGELEKARELFDLL-------PNKEDTACWNAMVAGYAKI 153
                PD  ++   +   +  G LE+ R  F L+       P  E  AC   MV    + 
Sbjct: 403 DSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLAC---MVDLLGRA 459

Query: 154 GNYNEAKKLLDAM---PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLD 210
           G   EA + +  M   P++ +  W ++L     + +  +                     
Sbjct: 460 GKVKEAYRFIQDMSMEPNERV--WGALLGACRVHSDTDIG-------------------- 497

Query: 211 GYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG-YARNGR 248
                  L +A K FQ  PEQ+   +  +LS  YA+ GR
Sbjct: 498 -------LLAADKLFQLAPEQS--GYYVLLSNIYAKAGR 527



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 77/192 (40%), Gaps = 33/192 (17%)

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
           R +H   I      +  +G  L+  YA    + +A  +F +    +VI  N +I  Y  N
Sbjct: 59  RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV------YAI 588
           G   E +K+F  M    V PD  TF  VL ACS  G +  G K+    T+V      +  
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVG 178

Query: 589 EPLVEHYA---------CMIDLLSRAG---------------RLDEAFEMVKGM---KIK 621
             LV  Y           ++D +SR                 R D+A E+ + M   KI 
Sbjct: 179 NGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKIS 238

Query: 622 PNAGIWGTLLGA 633
            +AG   +LL A
Sbjct: 239 HDAGTMASLLPA 250


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 197/667 (29%), Positives = 339/667 (50%), Gaps = 59/667 (8%)

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
           +K   L  +    ++      ++  Y   G+ + ++   D +  KNI SWNS++S Y + 
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRF 98

Query: 185 GEMHLA----SKFFE----AMEERDVVSWNLMLDGYVEL-DDLDSAWKFFQKIPEQNVVS 235
           G+ H A    ++ F          D  ++  +L   V L D        F+   E +V  
Sbjct: 99  GKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCCVFKMGFEDDVFV 158

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
             +++  Y+R G +  A ++F  MP+++V +WNAMI+ + Q G    A  +   M     
Sbjct: 159 AASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGV 218

Query: 296 VSWTTMIDGYVRI-AKLDEA-------RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347
              T  +   + + A+ D+          +L      ++    A+I+ Y +  R+ +A  
Sbjct: 219 KMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQM 278

Query: 348 IFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM------------------------ 383
           +FD++   D+V WN +I  Y Q      A+  F+ M                        
Sbjct: 279 VFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSD 338

Query: 384 ----------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
                           ++KD+V  N ++  YA++  M+ A  +F+++  R++T+SWN L+
Sbjct: 339 QRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQL-PRKDTISWNTLV 397

Query: 428 SGFLQNEFHLDALKIFVLMTQ-EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
           +G+ QN    +A+  + +M +      +  T    + A +H+ ALQ G +IH   IK+  
Sbjct: 398 TGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSL 457

Query: 487 VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEE 546
             D+FV   LI +Y KCGR+++A  LF +      + WN++IA   I+G   EA++LF++
Sbjct: 458 YLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKD 517

Query: 547 MVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAG 606
           M+ E V  D +TF+ +LSACSH GLVD G K F+ M + Y I+P ++HY CM+DLL RAG
Sbjct: 518 MLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAG 577

Query: 607 RLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSN 666
            L++A+E+V+ M I+P+A IWG LL AC+++ N +LG +A ++L E++ +    Y LLSN
Sbjct: 578 YLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSN 637

Query: 667 MHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKT 726
           ++A   +W+ V KVR      G +K PG S + V ++   F +G+    +  EI   LK 
Sbjct: 638 IYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKV 697

Query: 727 LAAQIRN 733
           L+A++++
Sbjct: 698 LSAKMKS 704



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 138/567 (24%), Positives = 261/567 (46%), Gaps = 78/567 (13%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
            +N V    +I+ Y  +G ++ +R  F+ + ++N+ SWNS+I+ Y+   K  EA    ++
Sbjct: 51  SQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQ 110

Query: 103 MF--------RPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIG 154
           +F        RPD +++  ++       + +K       +  ++D     ++V  Y++ G
Sbjct: 111 LFSMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYG 170

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLD 210
             + A K+   MP K++ SWN+M+SG+ +NG    A      M+    + D ++   +L 
Sbjct: 171 VLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILP 230

Query: 211 GYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNVVA 266
              + DD+ +       + +  + S V     +++ Y++ GR+ +A+ +FDQM +R++V+
Sbjct: 231 VCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVS 290

Query: 267 WNAMIAAYVQRGQIEEAARLFIEM------PERNPVSWTTMIDGYVRIAKLDEA------ 314
           WN++IAAY Q      A R F  M      P+   V   T I   +   ++  +      
Sbjct: 291 WNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVI 350

Query: 315 -RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRM 373
            R  LD    K++    A+++ Y +   M+ A+ +FD++   D + WN ++ GY Q G  
Sbjct: 351 RREWLD----KDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLA 406

Query: 374 DEAINLFRQMVN-KDIV----TWNTMIAGYAQI--------------------------- 401
            EAI+ +  M   +D +    TW ++I  Y+ +                           
Sbjct: 407 SEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATC 466

Query: 402 --------RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA 453
                    +++DA+ +F E+  R  +V WNA+I+    +    +AL++F  M  E  KA
Sbjct: 467 LIDLYGKCGRLEDAMSLFYEI-PRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKA 525

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKS-GYVNDLFVGNSLITMYAKCGRIQNAELL 512
           DH T    LSAC+H   +  G++   +  K  G    L     ++ +  + G ++ A  L
Sbjct: 526 DHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYEL 585

Query: 513 FKDADPV--DVISWNSLIAGYAINGNA 537
            ++  P+  D   W +L++   I GNA
Sbjct: 586 VRNM-PIQPDASIWGALLSACKIYGNA 611



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 108/497 (21%), Positives = 214/497 (43%), Gaps = 88/497 (17%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           +F    + +     S++  Y++ G ++ A K+F  MP +++ SWN+MI+G+  N     A
Sbjct: 147 VFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGA 206

Query: 97  RELFDKM----FRPDLFSWA-LMITCYTRKGELEKARELFDLLPNKEDTACW--NAMVAG 149
             + ++M     + D  + A ++  C      +        +L +  D+  +  NA++  
Sbjct: 207 LGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINM 266

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----------- 198
           Y+K G   +A+ + D M  +++VSWNS+++ Y +N +   A +FF+ M+           
Sbjct: 267 YSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTV 326

Query: 199 -----------------------------ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP 229
                                        ++DVV  N +++ Y +L  ++ A   F ++P
Sbjct: 327 VSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLP 386

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQM-----PIRNVVAWNAMIAAYVQRGQIEEAA 284
            ++ +SW T+++GY +NG   EA   ++ M      I N   W ++I AY   G +++  
Sbjct: 387 RKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGM 446

Query: 285 RLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDE 344
           ++                             +L+    Y ++   T +I  Y +  R+++
Sbjct: 447 KIH---------------------------AKLIKNSLYLDVFVATCLIDLYGKCGRLED 479

Query: 345 ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQ 400
           A  +F +I     V WN +I      GR +EA+ LF+ M    V  D +T+ ++++  + 
Sbjct: 480 AMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSH 539

Query: 401 IRQMDDAVKIFEEMGKR---RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHST 457
              +D+  K F+ M K    + ++     +   L    +L+  K + L+     + D S 
Sbjct: 540 SGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLE--KAYELVRNMPIQPDASI 597

Query: 458 LACALSACAHLAALQLG 474
               LSAC      +LG
Sbjct: 598 WGALLSACKIYGNAELG 614



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 156/326 (47%), Gaps = 44/326 (13%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S VF  N  I    K GR+++A  +F QM  ++ V++NS+I+AY +N   + A + F+ M
Sbjct: 255 SDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGM 314

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD 132
                      + G                  RPDL +   + + +++  +   +R +  
Sbjct: 315 ----------QLGG-----------------IRPDLLTVVSLTSIFSQLSDQRISRSILG 347

Query: 133 LLPNKE----DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
            +  +E    D    NA+V  YAK+G  N A  + D +P K+ +SWN++++GYT+NG   
Sbjct: 348 FVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLAS 407

Query: 189 LASKFFEAMEE-RDVV----SWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTM 239
            A   +  MEE RD +    +W  ++  Y  +  L    K   K+ +     +V     +
Sbjct: 408 EAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCL 467

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM-PER---NP 295
           +  Y + GR+ +A  LF ++P    V WNA+IA+    G+ EEA +LF +M  ER   + 
Sbjct: 468 IDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADH 527

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQM 321
           +++ +++        +DE ++  D M
Sbjct: 528 ITFVSLLSACSHSGLVDEGQKCFDIM 553



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 16/194 (8%)

Query: 447 TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI 506
           T   K AD + L    ++C ++ A    +++H L +  G   ++ +   LI +Y   G I
Sbjct: 17  TSLHKDADFNAL---FNSCVNVNAT---KKLHALLLVFGKSQNIVLSTKLINLYVTHGDI 70

Query: 507 QNAELLFKDADPVDVISWNSLIAGYAINGNATEAI----KLFEEMVMEGVAPDPVTFIGV 562
             +   F      ++ SWNS+I+ Y   G   EA+    +LF       + PD  TF  +
Sbjct: 71  SLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPI 130

Query: 563 LSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKP 622
           L AC  V LVDG  K   C       E  V   A ++ L SR G LD A ++   M +K 
Sbjct: 131 LKAC--VSLVDG--KKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVK- 185

Query: 623 NAGIWGTLL-GACR 635
           + G W  ++ G C+
Sbjct: 186 DVGSWNAMISGFCQ 199


>gi|302812269|ref|XP_002987822.1| hypothetical protein SELMODRAFT_126782 [Selaginella moellendorffii]
 gi|300144441|gb|EFJ11125.1| hypothetical protein SELMODRAFT_126782 [Selaginella moellendorffii]
          Length = 599

 Score =  326 bits (836), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 199/624 (31%), Positives = 315/624 (50%), Gaps = 56/624 (8%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
            +T++ N +IS +A+NG + +A+ LF+ M  R++VSWNS++  Y  +    EARE+F KM
Sbjct: 3   SSTLSCNRIISGFARNGHLENAKSLFDAMFDRDVVSWNSILGAYSRHGATSEAREVFGKM 62

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
              D FSW+ M++ +      ++  ELFD LP +E  + W +M+   A+ G   E + + 
Sbjct: 63  PATDGFSWSSMLSAFAHTASRDEVGELFDKLPVRELIS-WTSMLHSCARDGRLEEMQAVF 121

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWK 223
              P  +++ WN +++   + G +  A  F   +  RDVV+WN+M+        L+ A  
Sbjct: 122 WRFPCWDVICWNEVITACAREGHLSDALMFHHGIPARDVVTWNIMVRALA----LEGAVA 177

Query: 224 FFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEA 283
            F+++P+ ++VSW +M+  Y   G    A RL  Q+   ++ A N++I AY  +GQ+EEA
Sbjct: 178 AFERMPQHDIVSWNSMVHAYGLAGETGSAARLLQQLACFSLAATNSVIGAYGLKGQVEEA 237

Query: 284 ARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMD 343
            R+F  M  RN VSW +M+ GYVR  ++ EA+ L D M      A TA        KR  
Sbjct: 238 RRVFDAMLHRNTVSWNSMVAGYVRAGRVAEAKLLFDAM------ADTA--------KR-- 281

Query: 344 EANQIFDKIGTHDVVCWNVMIKGYA---QCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQ 400
                       DVV WN M+  +        ++     FR+M      +WN M+  YA 
Sbjct: 282 ------------DVVSWNTMLPAFTVTEDAAVLELVEECFRRMPFTSQASWNAMLHAYAC 329

Query: 401 IRQMDDAVKIFEEMGKRRNTVSWNA----LISGFLQNEFHLDALKIFVLMTQEGKKADHS 456
                 A ++FE M ++ +          L+SG  Q+     A  +  LM  +G K D  
Sbjct: 330 GGVTQRAEQLFERMPEKDSASWSALASARLLSGKCQS-----AASVVALMDLDGCKPDAV 384

Query: 457 TLACALSACAHLAALQLGRQIHH--LAIKSGYVNDLF-VGNSLITMYAKCGRIQNAELLF 513
           +   AL AC   + L  GR +H   +A     + D   V  +L++MY++C  +  A   F
Sbjct: 385 SYISALEACGMASDLAQGRILHAEIVAADDPALQDGGKVATALVSMYSRCAALGEAVAAF 444

Query: 514 KDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVD 573
                 +++SW +++A  A NG ++ A   F  M + G  PD ++FI +LSACSH G V+
Sbjct: 445 DGMSSKNLVSWTAMVAALAQNGFSSLARLAFWRMELNGFTPDSISFISILSACSHAGSVE 504

Query: 574 GGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
            G   F  M   Y I+P ++HYAC++DLL RAG L++A E++  M   P      +LL A
Sbjct: 505 LGWSHFVSMVGDYGIQPGLDHYACVLDLLGRAGNLEDAHELMDAMPFIPGPDSRTSLLSA 564

Query: 634 CRMHQNIKLGRIAVEKLSELEPQK 657
           CR         + V K+ E  P +
Sbjct: 565 CR--------GLPVSKVPEFVPHE 580



 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 160/605 (26%), Positives = 284/605 (46%), Gaps = 62/605 (10%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S   + N+ I+   ++G +E A  +F  M  ++ V++NS++ AY+++G  ++AR++F +M
Sbjct: 3   SSTLSCNRIISGFARNGHLENAKSLFDAMFDRDVVSWNSILGAYSRHGATSEAREVFGKM 62

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD 132
           P  +  SW+SM++ + H     E  ELFDK+   +L SW  M+    R G LE+ + +F 
Sbjct: 63  PATDGFSWSSMLSAFAHTASRDEVGELFDKLPVRELISWTSMLHSCARDGRLEEMQAVFW 122

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASK 192
             P   D  CWN ++   A+ G+ ++A      +P++++V+WN M+      G    A  
Sbjct: 123 RFPCW-DVICWNEVITACAREGHLSDALMFHHGIPARDVVTWNIMVRALALEG----AVA 177

Query: 193 FFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEA 252
            FE M + D+VSWN M+  Y    +  SA +  Q++   ++ +  +++  Y   G++ EA
Sbjct: 178 AFERMPQHDIVSWNSMVHAYGLAGETGSAARLLQQLACFSLAATNSVIGAYGLKGQVEEA 237

Query: 253 RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE---RNPVSWTTMIDGYV--- 306
           RR+FD M  RN V+WN+M+A YV+ G++ EA  LF  M +   R+ VSW TM+  +    
Sbjct: 238 RRVFDAMLHRNTVSWNSMVAGYVRAGRVAEAKLLFDAMADTAKRDVVSWNTMLPAFTVTE 297

Query: 307 RIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG 366
             A L+       +MP+ + A+  AM+  Y        A Q+F+++   D   W+ +   
Sbjct: 298 DAAVLELVEECFRRMPFTSQASWNAMLHAYACGGVTQRAEQLFERMPEKDSASWSALASA 357

Query: 367 YAQCGRMDEAINLFRQM----VNKDIVTW------------------------------- 391
               G+   A ++   M       D V++                               
Sbjct: 358 RLLSGKCQSAASVVALMDLDGCKPDAVSYISALEACGMASDLAQGRILHAEIVAADDPAL 417

Query: 392 -------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
                    +++ Y++   + +AV  F+ M   +N VSW A+++   QN F   A   F 
Sbjct: 418 QDGGKVATALVSMYSRCAALGEAVAAFDGMSS-KNLVSWTAMVAALAQNGFSSLARLAFW 476

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN--SLITMYAK 502
            M   G   D  +    LSAC+H  +++LG   H +++   Y     + +   ++ +  +
Sbjct: 477 RMELNGFTPDSISFISILSACSHAGSVELGWS-HFVSMVGDYGIQPGLDHYACVLDLLGR 535

Query: 503 CGRIQNAELLFKDADPV--DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
            G +++A  L  DA P      S  SL++  A  G     +  F     E    + V F+
Sbjct: 536 AGNLEDAHELM-DAMPFIPGPDSRTSLLS--ACRGLPVSKVPEFVPHEQELDGGEDVLFV 592

Query: 561 GVLSA 565
           G+L+A
Sbjct: 593 GILAA 597


>gi|224065397|ref|XP_002301797.1| predicted protein [Populus trichocarpa]
 gi|222843523|gb|EEE81070.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  326 bits (836), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 189/543 (34%), Positives = 288/543 (53%), Gaps = 52/543 (9%)

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----N 294
           +++ YAR G +  AR LFD++P R V AWNAMI AY +R  + E   L+ +M       +
Sbjct: 46  VIASYARIGGITSARHLFDKLPQRGVDAWNAMIVAYSRRYHLTEVLNLYHQMVNEGGKPD 105

Query: 295 PVSWTTMIDGYVRIAKLDEA----RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD 350
             ++T  I     +  L+      RR +D     ++   +++++ YV+  ++DEA  +FD
Sbjct: 106 SSTFTVAIKASSSLKDLEAGERIWRRAVDFGYGCDVFVGSSVLNLYVKCGKIDEAKLVFD 165

Query: 351 KIGTHDVVCWNVMIKGYAQCGRMDEAINLFR----------------------------- 381
           K+   DVVCW  MI G  Q G + EA+++FR                             
Sbjct: 166 KMVKRDVVCWATMITGLVQNGNVLEAVDMFRRMRKEGIEGDGVLMLGLVQACANLGELKL 225

Query: 382 -----------QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
                      +M+  D++   +++  YA+I  ++ A ++FE+M  R+N VSW ALISGF
Sbjct: 226 GLSVHGHAVRREMLMDDVILQTSLVDMYAKIGDLELASRVFEQM-PRKNAVSWGALISGF 284

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIH-HLAIKSGYVND 489
            QN F   AL + V M     K D + L  AL AC+ +  L+LG+ IH ++  + G+  +
Sbjct: 285 AQNGFAEYALDLLVEMQSLEFKPDTAVLVSALLACSQVGHLKLGKSIHGYIVRRLGF--E 342

Query: 490 LFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549
           L +G +LI MYAKCG +  A  +F   D  DVI WN++IA Y I+G+  E + LF +M  
Sbjct: 343 LVLGTALIDMYAKCGSLSCAHAIFDRVDSRDVILWNTMIASYGIHGDGKEVLSLFLKMKE 402

Query: 550 EGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLD 609
             ++PD  TF  +LSA SH G VD G   F  M     I P  +HYACM+DL SRAGR++
Sbjct: 403 ANISPDHATFASLLSALSHSGQVDVGQYWFNAMVNECKIPPSEKHYACMVDLFSRAGRVE 462

Query: 610 EAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHA 669
           EA+++++ M  +P   IW  LL  C  ++N+  G +A +K+ +L P     YAL+SN  +
Sbjct: 463 EAYQLIESMNTEPGLAIWVALLSGCHNYRNLLFGEVAAKKILDLNPDDLGIYALVSNFFS 522

Query: 670 EAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAA 729
            A  WD V  +R  M+ +G +K PG S +EV  +   FL  D    +  EI   L +L  
Sbjct: 523 LARMWDRVSILRKIMKETGMKKVPGYSAVEVNGKHEAFLVEDKNHHQYEEILQMLDSLDN 582

Query: 730 QIR 732
           ++R
Sbjct: 583 EMR 585



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 179/406 (44%), Gaps = 77/406 (18%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----RPD 107
           +I++YA+ G +  AR LF+++PQR + +WN+MI  Y     + E   L+ +M     +PD
Sbjct: 46  VIASYARIGGITSARHLFDKLPQRGVDAWNAMIVAYSRRYHLTEVLNLYHQMVNEGGKPD 105

Query: 108 LFSWALMITCYTRKGELEKARELFDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLD 164
             ++ + I   +   +LE    ++    +     D    ++++  Y K G  +EAK + D
Sbjct: 106 SSTFTVAIKASSSLKDLEAGERIWRRAVDFGYGCDVFVGSSVLNLYVKCGKIDEAKLVFD 165

Query: 165 AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER------------------------ 200
            M  +++V W +M++G  +NG +  A   F  M +                         
Sbjct: 166 KMVKRDVVCWATMITGLVQNGNVLEAVDMFRRMRKEGIEGDGVLMLGLVQACANLGELKL 225

Query: 201 ----------------DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYA 244
                           DV+    ++D Y ++ DL+ A + F+++P +N VSW  ++SG+A
Sbjct: 226 GLSVHGHAVRREMLMDDVILQTSLVDMYAKIGDLELASRVFEQMPRKNAVSWGALISGFA 285

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNA-MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMID 303
           +NG    A  L  +M         A +++A +   Q+               +     I 
Sbjct: 286 QNGFAEYALDLLVEMQSLEFKPDTAVLVSALLACSQV-------------GHLKLGKSIH 332

Query: 304 GYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVM 363
           GY+        RRL  ++        TA+I  Y +   +  A+ IFD++ + DV+ WN M
Sbjct: 333 GYI-------VRRLGFEL-----VLGTALIDMYAKCGSLSCAHAIFDRVDSRDVILWNTM 380

Query: 364 IKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMD 405
           I  Y   G   E ++LF +M    ++ D  T+ ++++  +   Q+D
Sbjct: 381 IASYGIHGDGKEVLSLFLKMKEANISPDHATFASLLSALSHSGQVD 426



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 114/456 (25%), Positives = 210/456 (46%), Gaps = 50/456 (10%)

Query: 112 ALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI 171
            L+I  Y R G +  AR LFD LP +   A WNAM+  Y++  +  E   L   M ++  
Sbjct: 44  GLVIASYARIGGITSARHLFDKLPQRGVDA-WNAMIVAYSRRYHLTEVLNLYHQMVNEGG 102

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAMEER-----------DVVSWNLMLDGYVELDDLDS 220
              +S  +   K      + K  EA E             DV   + +L+ YV+   +D 
Sbjct: 103 KPDSSTFTVAIKASS---SLKDLEAGERIWRRAVDFGYGCDVFVGSSVLNLYVKCGKIDE 159

Query: 221 AWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR--- 277
           A   F K+ +++VV W TM++G  +NG +LEA  +F +M    +     ++   VQ    
Sbjct: 160 AKLVFDKMVKRDVVCWATMITGLVQNGNVLEAVDMFRRMRKEGIEGDGVLMLGLVQACAN 219

Query: 278 -GQIE-------EAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
            G+++        A R   EM   + +  T+++D Y +I  L+ A R+ +QMP KN  + 
Sbjct: 220 LGELKLGLSVHGHAVRR--EMLMDDVILQTSLVDMYAKIGDLELASRVFEQMPRKNAVSW 277

Query: 330 TAMISGYVQNKRMDEANQIFDKIGT----HDVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385
            A+ISG+ QN   + A  +  ++ +     D       +   +Q G +    ++   +V 
Sbjct: 278 GALISGFAQNGFAEYALDLLVEMQSLEFKPDTAVLVSALLACSQVGHLKLGKSIHGYIVR 337

Query: 386 K---DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI 442
           +   ++V    +I  YA+   +  A  IF+ +   R+ + WN +I+ +  +    + L +
Sbjct: 338 RLGFELVLGTALIDMYAKCGSLSCAHAIFDRV-DSRDVILWNTMIASYGIHGDGKEVLSL 396

Query: 443 FVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS------L 496
           F+ M +     DH+T A  LSA +H   + +G+        +  VN+  +  S      +
Sbjct: 397 FLKMKEANISPDHATFASLLSALSHSGQVDVGQYWF-----NAMVNECKIPPSEKHYACM 451

Query: 497 ITMYAKCGRIQNAELLFK--DADPVDVISWNSLIAG 530
           + ++++ GR++ A  L +  + +P   I W +L++G
Sbjct: 452 VDLFSRAGRVEEAYQLIESMNTEPGLAI-WVALLSG 486



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/402 (23%), Positives = 184/402 (45%), Gaps = 43/402 (10%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL- 108
           +S+++ Y K G++++A+ +F++M +R++V W +MI G + N  V EA ++F +M +  + 
Sbjct: 145 SSVLNLYVKCGKIDEAKLVFDKMVKRDVVCWATMITGLVQNGNVLEAVDMFRRMRKEGIE 204

Query: 109 ----FSWALMITCYTRKGELEKARELFDLLPNKE----DTACWNAMVAGYAKIGNYNEAK 160
                   L+  C    GEL+    +      +E    D     ++V  YAKIG+   A 
Sbjct: 205 GDGVLMLGLVQAC-ANLGELKLGLSVHGHAVRREMLMDDVILQTSLVDMYAKIGDLELAS 263

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD-------VVSWNLMLDGYV 213
           ++ + MP KN VSW +++SG+ +NG    A      M+  +       +VS  L      
Sbjct: 264 RVFEQMPRKNAVSWGALISGFAQNGFAEYALDLLVEMQSLEFKPDTAVLVSALLACSQVG 323

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
            L    S   +  +     +V    ++  YA+ G +  A  +FD++  R+V+ WN MIA+
Sbjct: 324 HLKLGKSIHGYIVRRLGFELVLGTALIDMYAKCGSLSCAHAIFDRVDSRDVILWNTMIAS 383

Query: 274 YVQRGQIEEAARLFIEMPERN----PVSWTTMIDGYVRIAKLDEARRLLDQM-------P 322
           Y   G  +E   LF++M E N      ++ +++       ++D  +   + M       P
Sbjct: 384 YGIHGDGKEVLSLFLKMKEANISPDHATFASLLSALSHSGQVDVGQYWFNAMVNECKIPP 443

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH-DVVCWNVMIKGYAQCGRMDEAINLFR 381
            +   A   M+  + +  R++EA Q+ + + T   +  W  ++ G      +     LF 
Sbjct: 444 SEKHYA--CMVDLFSRAGRVEEAYQLIESMNTEPGLAIWVALLSGCHNYRNL-----LFG 496

Query: 382 QMVNKDIVTWN-------TMIAGYAQIRQMDDAVKIFEEMGK 416
           ++  K I+  N        +++ +  + +M D V I  ++ K
Sbjct: 497 EVAAKKILDLNPDDLGIYALVSNFFSLARMWDRVSILRKIMK 538



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/429 (20%), Positives = 188/429 (43%), Gaps = 54/429 (12%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           G  VF  +  +    K G+++EA  +F +M +++ V + +MI+   +NG V +A  +F +
Sbjct: 138 GCDVFVGSSVLNLYVKCGKIDEAKLVFDKMVKRDVVCWATMITGLVQNGNVLEAVDMFRR 197

Query: 72  MPQRNLVSWNSMIAGY---------------LHNDKVKEARELFDKMFRPDLFSWALMIT 116
           M +  +     ++ G                +H   V+       +M   D+     ++ 
Sbjct: 198 MRKEGIEGDGVLMLGLVQACANLGELKLGLSVHGHAVRR------EMLMDDVILQTSLVD 251

Query: 117 CYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS----KNIV 172
            Y + G+LE A  +F+ +P K +   W A+++G+A+ G    A  LL  M S     +  
Sbjct: 252 MYAKIGDLELASRVFEQMPRK-NAVSWGALISGFAQNGFAEYALDLLVEMQSLEFKPDTA 310

Query: 173 SWNSMLSGYTKNGEMHLASKFFEAMEER---DVVSWNLMLDGYVELDDLDSAWKFFQKIP 229
              S L   ++ G + L       +  R   ++V    ++D Y +   L  A   F ++ 
Sbjct: 311 VLVSALLACSQVGHLKLGKSIHGYIVRRLGFELVLGTALIDMYAKCGSLSCAHAIFDRVD 370

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAAR 285
            ++V+ W TM++ Y  +G   E   LF +M   N+      + ++++A    GQ++    
Sbjct: 371 SRDVILWNTMIASYGIHGDGKEVLSLFLKMKEANISPDHATFASLLSALSHSGQVDVGQY 430

Query: 286 LFIEMPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISGYVQN 339
            F  M     +      +  M+D + R  +++EA +L++ M  +  +A   A++SG   N
Sbjct: 431 WFNAMVNECKIPPSEKHYACMVDLFSRAGRVEEAYQLIESMNTEPGLAIWVALLSG-CHN 489

Query: 340 KRMDEANQIFDKIGTHDVVCWN-------VMIKGYAQCGRMDEAINLFRQMVNKDIVTWN 392
            R    N +F ++    ++  N        ++  +    RM + +++ R+++ +   T  
Sbjct: 490 YR----NLLFGEVAAKKILDLNPDDLGIYALVSNFFSLARMWDRVSILRKIMKE---TGM 542

Query: 393 TMIAGYAQI 401
             + GY+ +
Sbjct: 543 KKVPGYSAV 551


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  326 bits (836), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 182/490 (37%), Positives = 282/490 (57%), Gaps = 15/490 (3%)

Query: 254 RLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIA 309
           R+FD +   NV  WN MI   ++  +  +A  L+ EM       N  ++  ++       
Sbjct: 93  RVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSG 152

Query: 310 KLDEARRLLDQMPYKNIAAQTAMISG----YVQNKRMDEANQIFD-KIGTHDVVCWNVMI 364
            + E  ++   +    +     ++S     Y    R+ EA +I D K G  D VCWN MI
Sbjct: 153 VVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMI 212

Query: 365 KGYAQCGRMDEAINLFRQMVNKDIV-TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
            GY + G ++ A  LF  M ++ ++ TWN MI+G+++   ++ A + F+EM K R+ +SW
Sbjct: 213 DGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEM-KERDEISW 271

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
           +A+I G++Q    ++AL+IF  M +E  +     L   LSACA+L AL  GR IH  A +
Sbjct: 272 SAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKR 331

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
           +    D  +G SL+ MYAKCGRI  A  +F+     +V SWN++I G A++G A +AI L
Sbjct: 332 NSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDL 391

Query: 544 FEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLS 603
           F +M    + P+ +TF+GVL+AC+H GLV  GL +F  M + Y +EP +EHY C++DLL 
Sbjct: 392 FSKM---DIYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLG 448

Query: 604 RAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYAL 663
           RAG L EA ++V  +  +P   +WG LLGACR H N++LG    + L ELEPQ +  Y L
Sbjct: 449 RAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTL 508

Query: 664 LSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEV-KNQIHTFLSGDPKQCRTAEICN 722
           LSN++A+AGRW+EV +VR  M+  G +  PG S I++ + ++H F+ GD    +  +I  
Sbjct: 509 LSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQ 568

Query: 723 TLKTLAAQIR 732
            L  +  +++
Sbjct: 569 MLDKVKERLQ 578



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 101/416 (24%), Positives = 187/416 (44%), Gaps = 58/416 (13%)

Query: 33  EAIKIFSQM----SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVS----WNSMI 84
           +AI ++ +M    S+ N  TY +++ A + +G V +  ++   + +  L       +S I
Sbjct: 121 KAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAI 180

Query: 85  AGYLHNDKVKEARELFD-KMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACW 143
             Y    ++ EAR + D K    D   W  MI  Y R GE+E ARELF+ +P++   + W
Sbjct: 181 RMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTW 240

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER--- 200
           NAM++G+++ G    A++  D M  ++ +SW++M+ GY + G    A + F  M++    
Sbjct: 241 NAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIR 300

Query: 201 -------------------DVVSW--------NLMLDG---------YVELDDLDSAWKF 224
                              D   W        ++ LDG         Y +   +D AW+ 
Sbjct: 301 PRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEV 360

Query: 225 FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEA 283
           F+K+  + V SW  M+ G A +GR  +A  LF +M I  N + +  ++ A    G +++ 
Sbjct: 361 FEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIYPNEITFVGVLNACAHGGLVQKG 420

Query: 284 ARLFIEMPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ 338
             +F  M +   V      +  ++D   R   L EA +++  +P +   A    + G  +
Sbjct: 421 LTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACR 480

Query: 339 ---NKRMDE-ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
              N  + E   +I  ++   +   + ++   YA+ GR +E   + + M  + I T
Sbjct: 481 KHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKT 536



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/386 (23%), Positives = 173/386 (44%), Gaps = 60/386 (15%)

Query: 99  LFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL------PNKED-----TACWNAMV 147
           +FD + +P++F W  MI       E  KA  L+  +      PNK        AC ++ V
Sbjct: 94  VFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGV 153

Query: 148 AG---------------------------YAKIGNYNEAKKLLDAMPSK-NIVSWNSMLS 179
                                        YA  G   EA+++LD    + + V WN+M+ 
Sbjct: 154 VAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMID 213

Query: 180 GYTKNGEMHLASKFFEAMEERDVVS-WNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
           GY + GE+  A + FE M +R ++S WN M+ G+     ++ A +FF ++ E++ +SW  
Sbjct: 214 GYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSA 273

Query: 239 MLSGYARNGRMLEARRLFDQM------PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE 292
           M+ GY + G  +EA  +F QM      P + V+   ++++A    G +++  R      +
Sbjct: 274 MIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLP--SVLSACANLGALDQ-GRWIHTYAK 330

Query: 293 RNPVSW-----TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347
           RN +       T+++D Y +  ++D A  + ++M  K +++  AMI G   + R ++A  
Sbjct: 331 RNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAID 390

Query: 348 IFDKIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQM-----VNKDIVTWNTMIAGYAQI 401
           +F K+  + + + +  ++   A  G + + + +F  M     V   I  +  ++    + 
Sbjct: 391 LFSKMDIYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRA 450

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALI 427
             + +A K+   +        W AL+
Sbjct: 451 GLLTEAEKVVSSIPTEPTPAVWGALL 476



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 86/185 (46%), Gaps = 9/185 (4%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP-QRNLVSWNSMIA 85
           K GR++ A ++F +MS K   ++N+MI   A +GR  DA  LF +M    N +++  ++ 
Sbjct: 350 KCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIYPNEITFVGVLN 409

Query: 86  GYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
              H   V++   +F+ M +     P +  +  ++    R G L +A ++   +P +   
Sbjct: 410 ACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTP 469

Query: 141 ACWNAMVAGYAKIGNY---NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
           A W A++    K GN        K+L  +  +N   +  + + Y K G      +  + M
Sbjct: 470 AVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLM 529

Query: 198 EERDV 202
           +ER +
Sbjct: 530 KERGI 534



 Score = 55.8 bits (133), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 14/190 (7%)

Query: 455 HSTLACALS--ACAHLAALQLGRQIHHL------AIKSGYVNDLFVGNSLITMYAKCG-- 504
           HST    LS  A  HL   Q    +HHL       +++G++ D ++  SL+  YA     
Sbjct: 24  HSTETSKLSHKAILHLLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTN 83

Query: 505 ---RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIG 561
                +++  +F      +V  WN +I     N    +AI L+ EMV+    P+  T+  
Sbjct: 84  RYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPA 143

Query: 562 VLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIK 621
           VL ACS  G+V  G+++   + + + +       +  I + +  GRL EA  ++     +
Sbjct: 144 VLKACSDSGVVAEGVQVHAHLVK-HGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGE 202

Query: 622 PNAGIWGTLL 631
            +A  W  ++
Sbjct: 203 VDAVCWNAMI 212


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 171/510 (33%), Positives = 291/510 (57%), Gaps = 15/510 (2%)

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN-- 294
           V ++  YA    +  AR++FD++P RNV+  N MI +YV  G   E  ++F  M   N  
Sbjct: 78  VKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVR 137

Query: 295 PVSWT--TMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQI 348
           P  +T   ++        +   R++        +++       ++S Y +   + EA  +
Sbjct: 138 PDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLV 197

Query: 349 FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQM 404
            D++   DVV WN ++ GYAQ  R D+A+ + R+M    ++ D  T  +++   +     
Sbjct: 198 LDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTE 257

Query: 405 DDAV--KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462
           +      +F +MGK+ + VSWN +I  +++N   ++A++++  M  +G + D  ++   L
Sbjct: 258 NVMYVKDMFFKMGKK-SLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVL 316

Query: 463 SACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI 522
            AC   +AL LG++IH    +   + +L + N+LI MYAKCG ++ A  +F++    DV+
Sbjct: 317 PACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVV 376

Query: 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582
           SW ++I+ Y  +G   +A+ LF ++   G+ PD + F+  L+ACSH GL++ G   F+ M
Sbjct: 377 SWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLM 436

Query: 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKL 642
           T+ Y I P +EH ACM+DLL RAG++ EA+  ++ M ++PN  +WG LLGACR+H +  +
Sbjct: 437 TDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDI 496

Query: 643 GRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKN 702
           G +A +KL +L P+++  Y LLSN++A+AGRW+EV  +R  M+  G +K PG S +EV  
Sbjct: 497 GLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNR 556

Query: 703 QIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            IHTFL GD    ++ EI   L  L  +++
Sbjct: 557 IIHTFLVGDRSHPQSDEIYRELDVLVKKMK 586



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 179/383 (46%), Gaps = 46/383 (12%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPD 107
           ++ AYA    V  ARK+F+++P+RN++  N MI  Y++N    E  ++F  M     RPD
Sbjct: 80  LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139

Query: 108 LFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLD 164
            +++  ++   +  G +   R++                N +V+ Y K G  +EA+ +LD
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 199

Query: 165 AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE-RDVVSWNLMLDGYVELDDLDSAWK 223
            M  +++VSWNS++ GY +N       +F +A+E  R++ S  +  D       + S   
Sbjct: 200 EMSRRDVVSWNSLVVGYAQN------QRFDDALEVCREMESVKISHDA----GTMASLLP 249

Query: 224 FFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEA 283
                  +NV+        Y ++        +F +M  +++V+WN MI  Y++     EA
Sbjct: 250 AVSNTTTENVM--------YVKD--------MFFKMGKKSLVSWNVMIGVYMKNAMPVEA 293

Query: 284 ARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK----NIAAQTAMISG 335
             L+  M     E + VS T+++      + L   +++   +  K    N+  + A+I  
Sbjct: 294 VELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDM 353

Query: 336 YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVTW 391
           Y +   +++A  +F+ + + DVV W  MI  Y   GR  +A+ LF ++ +     D + +
Sbjct: 354 YAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAF 413

Query: 392 NTMIAGYAQIRQMDDAVKIFEEM 414
            T +A  +    +++    F+ M
Sbjct: 414 VTTLAACSHAGLLEEGRSCFKLM 436



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 149/347 (42%), Gaps = 80/347 (23%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDA------- 65
           S +F  N  ++  GK G + EA  +  +MS+++ V++NS++  YA+N R +DA       
Sbjct: 173 STLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREM 232

Query: 66  ------------------------------RKLFEQMPQRNLVSWNSMIAGYLHNDKVKE 95
                                         + +F +M +++LVSWN MI  Y+ N    E
Sbjct: 233 ESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVE 292

Query: 96  ARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYA 151
           A EL+ +M    F PD    A+ IT                +LP   DT+   A+  G  
Sbjct: 293 AVELYSRMEADGFEPD----AVSIT---------------SVLPACGDTS---ALSLG-K 329

Query: 152 KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
           KI  Y E KKL+      N++  N+++  Y K G +  A   FE M+ RDVVSW  M+  
Sbjct: 330 KIHGYIERKKLI-----PNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISA 384

Query: 212 YVELDDLDSAWKFFQKIPEQNVV----SWVTMLSGYARNGRMLEARRLFDQMPIRNVVA- 266
           Y        A   F K+ +  +V    ++VT L+  +  G + E R  F  M     +  
Sbjct: 385 YGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITP 444

Query: 267 ----WNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMIDGYVRI 308
                  M+    + G+++EA R   +M  E N   W  ++ G  R+
Sbjct: 445 RLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALL-GACRV 490



 Score = 97.4 bits (241), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 90/423 (21%), Positives = 180/423 (42%), Gaps = 53/423 (12%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHN 90
           V  A K+F ++ ++N +  N MI +Y  NG   +  K+F  M   N+             
Sbjct: 90  VASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNV------------- 136

Query: 91  DKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMV 147
                         RPD +++  ++   +  G +   R++                N +V
Sbjct: 137 --------------RPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLV 182

Query: 148 AGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVV 203
           + Y K G  +EA+ +LD M  +++VSWNS++ GY +N     A +    ME      D  
Sbjct: 183 SMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAG 242

Query: 204 SWNLMLDGY--VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
           +   +L        +++      F K+ ++++VSW  M+  Y +N   +EA  L+ +M  
Sbjct: 243 TMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEA 302

Query: 262 R----NVVAWNAMIAAYVQRGQIEEAARL--FIEMPERNP--VSWTTMIDGYVRIAKLDE 313
                + V+  +++ A      +    ++  +IE  +  P  +    +ID Y +   L++
Sbjct: 303 DGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEK 362

Query: 314 ARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG----THDVVCWNVMIKGYAQ 369
           AR + + M  +++ + TAMIS Y  + R  +A  +F K+       D + +   +   + 
Sbjct: 363 ARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSH 422

Query: 370 CGRMDEAINLFRQMVNKDIVT-----WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
            G ++E  + F+ M +   +T        M+    +  ++ +A +  ++M    N   W 
Sbjct: 423 AGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWG 482

Query: 425 ALI 427
           AL+
Sbjct: 483 ALL 485



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 49/219 (22%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           N +  N++I  YAK G +  AR +FE M  R++VSW +MI+ Y  + +  +A  LF K+ 
Sbjct: 343 NLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQ 402

Query: 104 ---FRPDLFSWALMITCYTRKGELEKARELFDLL-------PNKEDTACWNAMVAGYAKI 153
                PD  ++   +   +  G LE+ R  F L+       P  E  AC   MV    + 
Sbjct: 403 DSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLAC---MVDLLGRA 459

Query: 154 GNYNEAKKLLDAM---PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLD 210
           G   EA + +  M   P++ +  W ++L     + +  +                     
Sbjct: 460 GKVKEAYRFIQDMSMEPNERV--WGALLGACRVHSDTDIG-------------------- 497

Query: 211 GYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG-YARNGR 248
                  L +A K FQ  PEQ+   +  +LS  YA+ GR
Sbjct: 498 -------LLAADKLFQLAPEQS--GYYVLLSNIYAKAGR 527



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 78/192 (40%), Gaps = 33/192 (17%)

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
           R +H   I      +  +G  L+  YA    + +A  +F +    +VI  N +I  Y  N
Sbjct: 59  RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV------YAI 588
           G   E +K+F  M    V PD  TF  VL ACS  G +  G K+    T+V      +  
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVG 178

Query: 589 EPLVEHYA-C--------MIDLLSRAG---------------RLDEAFEMVKGM---KIK 621
             LV  Y  C        ++D +SR                 R D+A E+ + M   KI 
Sbjct: 179 NGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKIS 238

Query: 622 PNAGIWGTLLGA 633
            +AG   +LL A
Sbjct: 239 HDAGTMASLLPA 250


>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
          Length = 669

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 162/415 (39%), Positives = 253/415 (60%), Gaps = 8/415 (1%)

Query: 325 NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384
           N+    + IS Y +  R D+A Q+F+++   DVV WN MI G+A  G    A+++FR++V
Sbjct: 46  NVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELV 105

Query: 385 -----NKDIVTWNTMIAGYAQIRQMDDAV--KIFEEMGKRRNTVSWNALISGFLQNEFHL 437
                  D  T  +++    + R  D A+   +F+EM + +  +SWNA+++ +  NE H+
Sbjct: 106 ALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEM-RFKGLISWNAMLAVYTNNEMHV 164

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
           +A+++F+ M ++G + D  TLA  L +C  ++AL LG++IH +  +    + + + N+L+
Sbjct: 165 EAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALM 224

Query: 498 TMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
            MYA CG ++ A  +F      DV+SW S+I+ Y  +G+  EAI LFE+M  +G+ PD +
Sbjct: 225 DMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSI 284

Query: 558 TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKG 617
            F+ +L+ACSH GL+D G   F  MT  + I P +EHYACM+DLL RAG + EA++ +  
Sbjct: 285 AFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMV 344

Query: 618 MKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEV 677
           M IKPN  +WG LLGACR+H N+ +G +A + L  L P++T  Y LLSN++A AGRW +V
Sbjct: 345 MPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADV 404

Query: 678 EKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
             VR  ME  G +K PG S  E+ +++HTF  GD    ++  I   L  L  +IR
Sbjct: 405 SMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQSKMIYKKLSELLRRIR 459



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 126/257 (49%), Gaps = 39/257 (15%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           N    +S IS YA+ GR +DA ++FE+M  R++VSWN+MI+G+ H      A ++F    
Sbjct: 46  NVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVF---- 101

Query: 105 RPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVA--GYAKIGNYNEAKKL 162
                                  REL  L   K D     +++   G A++ +    K +
Sbjct: 102 -----------------------RELVALQCPKPDAGTMASILPSMGKARVEDIALLKGV 138

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHL-ASKFFEAME----ERDVVSWNLMLDGYVELDD 217
            D M  K ++SWN+ML+ YT N EMH+ A + F  M+    E D V+   +L    E+  
Sbjct: 139 FDEMRFKGLISWNAMLAVYTNN-EMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSA 197

Query: 218 LDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
           L    +  + I  + + S +     ++  YA  G + EAR +FD M  R+VV+W ++I+A
Sbjct: 198 LSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISA 257

Query: 274 YVQRGQIEEAARLFIEM 290
           Y + G   EA  LF +M
Sbjct: 258 YGRHGHGREAIDLFEKM 274



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 117/236 (49%), Gaps = 16/236 (6%)

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD 517
           L     +CA    L LGRQIH    + G   ++FV +S I+MYA+CGR  +A  +F++  
Sbjct: 15  LPVGFKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQ 74

Query: 518 PVDVISWNSLIAGYAINGNATEAIKLFEEMV-MEGVAPDPVTFIGVLSACSHVGLVDGGL 576
             DV+SWN++I+G+A  G    A+ +F E+V ++   PD  T   +L +     + D  +
Sbjct: 75  YRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVED--I 132

Query: 577 KLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMK---IKPNAGIWGTLLGA 633
            L + + +    + L+  +  M+ + +      EA E+   M+   I+P+A    T+L +
Sbjct: 133 ALLKGVFDEMRFKGLIS-WNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPS 191

Query: 634 CRMHQNIKLGRIAVEKLSELEPQKTSCYAL-----LSNMHAEAGRWDEVEKVRVSM 684
           C     + LG+    ++ E+  ++  C ++     L +M+A  G   E   V  SM
Sbjct: 192 CGEVSALSLGK----RIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSM 243



 Score = 80.1 bits (196), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 112/267 (41%), Gaps = 50/267 (18%)

Query: 170 NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI- 228
           N+   +S +S Y + G    A + FE M+ RDVVSWN M+ G+        A   F+++ 
Sbjct: 46  NVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELV 105

Query: 229 ------PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEE 282
                 P+   ++ +    G AR   +   + +FD+M  + +++WNAM+A Y       E
Sbjct: 106 ALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVE 165

Query: 283 AARLFIEMP----ERNPVSWTT-----------------------------------MID 303
           A  LF+ M     E + V+  T                                   ++D
Sbjct: 166 AVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMD 225

Query: 304 GYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH----DVVC 359
            Y     L EAR + D M  +++ + T++IS Y ++    EA  +F+K+       D + 
Sbjct: 226 MYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIA 285

Query: 360 WNVMIKGYAQCGRMDEAINLFRQMVNK 386
           +  ++   +  G +D   + F  M ++
Sbjct: 286 FVAILAACSHAGLLDMGKHYFYSMTSE 312



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 69/145 (47%), Gaps = 9/145 (6%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S +  +N  +      G ++EA  +F  M  ++ V++ S+ISAY ++G   +A  LFE+M
Sbjct: 215 SSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKM 274

Query: 73  PQRNL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGE 123
             + L    +++ +++A   H   +   +  F  M       P L  +A M+    R G 
Sbjct: 275 CGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGC 334

Query: 124 LEKARELFDLLPNKEDTACWNAMVA 148
           + +A +   ++P K +   W A++ 
Sbjct: 335 IREAYDFIMVMPIKPNERVWGALLG 359



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 53/268 (19%), Positives = 116/268 (43%), Gaps = 44/268 (16%)

Query: 22  ITQLGKSGRVEEAI---KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           +  +GK+ RVE+      +F +M  K  +++N+M++ Y  N    +A +LF +M +  + 
Sbjct: 121 LPSMGKA-RVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIE 179

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWAL----MITCYTRKGELEKAREL 130
              V+  +++        +   + + + + R  + S  L    ++  Y   G L++AR++
Sbjct: 180 PDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDV 239

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGE 186
           FD +  + D   W ++++ Y + G+  EA  L + M  + +    +++ ++L+  +  G 
Sbjct: 240 FDSMGTR-DVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGL 298

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARN 246
           + +   +F +M                           F   P+  +  +  M+    R 
Sbjct: 299 LDMGKHYFYSMTSE------------------------FHIAPK--LEHYACMVDLLGRA 332

Query: 247 GRMLEARRLFDQMPIR-NVVAWNAMIAA 273
           G + EA      MPI+ N   W A++ A
Sbjct: 333 GCIREAYDFIMVMPIKPNERVWGALLGA 360


>gi|347954472|gb|AEP33736.1| chlororespiratory reduction 21, partial [Raphanus sativus]
          Length = 806

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 225/785 (28%), Positives = 389/785 (49%), Gaps = 80/785 (10%)

Query: 21  KITQLGKSGRVEEAIKIFSQMSQKNTVT----YNSMISA--YAKN---GRVNDARKLFE- 70
           +++ L K+G + EA+ + ++M  +N       Y  ++    Y ++   GR   AR L   
Sbjct: 15  RVSSLCKNGEIREALSLVTEMDFRNVRIGPEIYGEILQGCVYERDFHTGRQIHARILKNG 74

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKA--- 127
           +   +N      ++  Y   D  + A  LF K+   ++FSWA +I    R G  E A   
Sbjct: 75  EFYAKNEYIETKLVIFYAKCDAHEIAETLFSKLRVRNVFSWAAIIGVKCRVGLAEGALMG 134

Query: 128 ------RELFD---LLPNKEDTAC----WNAMVAG------------------------Y 150
                  E+F    ++PN    AC    W+    G                        Y
Sbjct: 135 FVEMLKDEIFPDNFVVPNV-CKACGALQWSGFGRGIHGYVAKSGLYGDCVFVASSLADMY 193

Query: 151 AKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWN 206
            K G  ++A+K+ D +P +N+V+WN+++ GY +NG    A +    M E  V    V+ +
Sbjct: 194 GKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVS 253

Query: 207 LMLDGYVELDDL-----DSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
             L     +  +       A      +   N++   ++L+ Y + G +  A  +FD+M  
Sbjct: 254 TCLSASANMCGVGEGKQSHAVAVVNGLEMDNILG-TSVLNFYCKVGLIEYAEMVFDRMIG 312

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLF----IEMPERNPVSWTTMIDGYVRIAKLDEARRL 317
           ++VV WN +I+ YVQ+G +E+A R+     +E  + + V+ +T++    R       + +
Sbjct: 313 KDVVTWNLLISGYVQQGLVEDAIRMCKLMRLEKLKFDCVTLSTLMSAAARTQNSKLGKEV 372

Query: 318 ----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRM 373
               +      +I   + +I  Y +   + +A ++FD     D++ WN ++  YA+ G  
Sbjct: 373 QCYCIRHSFESDIGLASTVIDMYAKCGSIVDAKRVFDSTVQKDLILWNTLLAAYAESGLS 432

Query: 374 DEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNAL 426
            EA+ LF +M    V  + +TWN +I    +  Q+D+A ++F +M   G     VSW  +
Sbjct: 433 GEALRLFYEMQLESVPPNAITWNLIILSLFRNGQVDEAKEMFLQMQSSGIVPTLVSWTTM 492

Query: 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG- 485
           ++G +QN    +A+     M + G + +  ++  ALSACA+LA+L LGR +H   I++  
Sbjct: 493 MNGLVQNGCSEEAVHYLRKMQESGLRPNVFSITVALSACANLASLHLGRSVHGYIIRNQL 552

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
           + + + +  +LI MYAKCG I  AE +FK     ++  +N++I+ YA++GN  EAI L+ 
Sbjct: 553 HSSSVSIETALIDMYAKCGDISKAEKVFKRKSYSELPLFNAMISAYALSGNVKEAIDLYR 612

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRA 605
            +   G+ PD +TF  VLSAC+H G ++  +++F  M   + +EP +EHY  M+DLL+ A
Sbjct: 613 SLEDMGIKPDNITFTNVLSACNHAGDINQAIEIFSDMVSKHGMEPCLEHYGLMVDLLASA 672

Query: 606 GRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLS 665
           G  ++A  +++ M  KP+A +  +LL  C      +L      +L E EP  +  Y  +S
Sbjct: 673 GETEKALRLMEEMPYKPDARMIQSLLVTCNEEHKTELVDYLSRQLLESEPDNSGNYVTIS 732

Query: 666 NMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKN---QIHTFLSGDPKQCRTAEICN 722
           N +A  G WDEV K+R  M+  G +K+PGCSWI++K    ++H F++ D    R  EI  
Sbjct: 733 NAYAGEGSWDEVVKMREMMKDKGLKKKPGCSWIQIKGXXEEVHVFVANDKTHLRNNEIRR 792

Query: 723 TLKTL 727
            L  L
Sbjct: 793 MLALL 797



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/474 (22%), Positives = 212/474 (44%), Gaps = 69/474 (14%)

Query: 9   GNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKL 68
           G  G  VF  +      GK G +++A K+F ++ ++N V +N+++  Y +NG   +A +L
Sbjct: 177 GLYGDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRL 236

Query: 69  FEQM------PQRNLVS---------------------------------WNSMIAGYLH 89
              M      P R  VS                                   S++  Y  
Sbjct: 237 MCDMREEGVEPTRVTVSTCLSASANMCGVGEGKQSHAVAVVNGLEMDNILGTSVLNFYCK 296

Query: 90  NDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL---PNKEDTACWNAM 146
              ++ A  +FD+M   D+ +W L+I+ Y ++G +E A  +  L+     K D    + +
Sbjct: 297 VGLIEYAEMVFDRMIGKDVVTWNLLISGYVQQGLVEDAIRMCKLMRLEKLKFDCVTLSTL 356

Query: 147 VAGYAKIGNYNEAKKL----LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV 202
           ++  A+  N    K++    +      +I   ++++  Y K G +  A + F++  ++D+
Sbjct: 357 MSAAARTQNSKLGKEVQCYCIRHSFESDIGLASTVIDMYAKCGSIVDAKRVFDSTVQKDL 416

Query: 203 VSWNLMLDGYVELDDLDSAWKFF-----QKIPEQNVVSWVTMLSGYARNGRMLEARRLFD 257
           + WN +L  Y E      A + F     + +P  N ++W  ++    RNG++ EA+ +F 
Sbjct: 417 ILWNTLLAAYAESGLSGEALRLFYEMQLESVP-PNAITWNLIILSLFRNGQVDEAKEMFL 475

Query: 258 QMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIA 309
           QM     +  +V+W  M+   VQ G  EEA     +M E     N  S T  +     +A
Sbjct: 476 QMQSSGIVPTLVSWTTMMNGLVQNGCSEEAVHYLRKMQESGLRPNVFSITVALSACANLA 535

Query: 310 KLDEARR-----LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMI 364
            L   R      + +Q+   +++ +TA+I  Y +   + +A ++F +    ++  +N MI
Sbjct: 536 SLHLGRSVHGYIIRNQLHSSSVSIETALIDMYAKCGDISKAEKVFKRKSYSELPLFNAMI 595

Query: 365 KGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
             YA  G + EAI+L+R +    +  D +T+  +++       ++ A++IF +M
Sbjct: 596 SAYALSGNVKEAIDLYRSLEDMGIKPDNITFTNVLSACNHAGDINQAIEIFSDM 649


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 197/667 (29%), Positives = 339/667 (50%), Gaps = 59/667 (8%)

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
           +K   L  +    ++      ++  Y   G+ + ++   D +  KNI SWNS++S Y + 
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRF 98

Query: 185 GEMHLA----SKFFE----AMEERDVVSWNLMLDGYVEL-DDLDSAWKFFQKIPEQNVVS 235
           G+ H A    ++ F          D  ++  +L   V L D        F+   E +V  
Sbjct: 99  GKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCCVFKMGFEDDVFV 158

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
             +++  Y+R G +  A ++F  MP+++V +WNAMI+ + Q G    A  +   M     
Sbjct: 159 AASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGV 218

Query: 296 VSWTTMIDGYVRI-AKLDEA-------RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347
              T  +   + + A+ D+          +L      ++    A+I+ Y +  R+ +A  
Sbjct: 219 KMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQM 278

Query: 348 IFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM------------------------ 383
           +FD++   D+V WN +I  Y Q      A+  F+ M                        
Sbjct: 279 VFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSD 338

Query: 384 ----------------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
                           ++KD+V  N ++  YA++  M+ A  +F+++  R++T+SWN L+
Sbjct: 339 QRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQL-PRKDTISWNTLV 397

Query: 428 SGFLQNEFHLDALKIFVLMTQ-EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
           +G+ QN    +A+  + +M +      +  T    + A +H+ ALQ G +IH   IK+  
Sbjct: 398 TGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSL 457

Query: 487 VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEE 546
             D+FV   LI +Y KCGR+++A  LF +      + WN++IA   I+G   EA++LF++
Sbjct: 458 YLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKD 517

Query: 547 MVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAG 606
           M+ E V  D +TF+ +LSACSH GLVD G K F+ M + Y I+P ++HY CM+DLL RAG
Sbjct: 518 MLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAG 577

Query: 607 RLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSN 666
            L++A+E+V+ M I+P+A IWG LL AC+++ N +LG +A ++L E++ +    Y LLSN
Sbjct: 578 YLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSN 637

Query: 667 MHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKT 726
           ++A   +W+ V KVR      G +K PG S + V ++   F +G+    +  EI   LK 
Sbjct: 638 IYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELKV 697

Query: 727 LAAQIRN 733
           L+A++++
Sbjct: 698 LSAKMKS 704



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 138/567 (24%), Positives = 261/567 (46%), Gaps = 78/567 (13%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
            +N V    +I+ Y  +G ++ +R  F+ + ++N+ SWNS+I+ Y+   K  EA    ++
Sbjct: 51  SQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQ 110

Query: 103 MF--------RPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIG 154
           +F        RPD +++  ++       + +K       +  ++D     ++V  Y++ G
Sbjct: 111 LFSMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYG 170

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLD 210
             + A K+   MP K++ SWN+M+SG+ +NG    A      M+    + D ++   +L 
Sbjct: 171 VLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILP 230

Query: 211 GYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNVVA 266
              + DD+ +       + +  + S V     +++ Y++ GR+ +A+ +FDQM +R++V+
Sbjct: 231 VCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVS 290

Query: 267 WNAMIAAYVQRGQIEEAARLFIEM------PERNPVSWTTMIDGYVRIAKLDEA------ 314
           WN++IAAY Q      A R F  M      P+   V   T I   +   ++  +      
Sbjct: 291 WNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVI 350

Query: 315 -RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRM 373
            R  LD    K++    A+++ Y +   M+ A+ +FD++   D + WN ++ GY Q G  
Sbjct: 351 RREWLD----KDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLA 406

Query: 374 DEAINLFRQMVN-KDIV----TWNTMIAGYAQI--------------------------- 401
            EAI+ +  M   +D +    TW ++I  Y+ +                           
Sbjct: 407 SEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATC 466

Query: 402 --------RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA 453
                    +++DA+ +F E+  R  +V WNA+I+    +    +AL++F  M  E  KA
Sbjct: 467 LIDLYGKCGRLEDAMSLFYEI-PRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKA 525

Query: 454 DHSTLACALSACAHLAALQLGRQIHHLAIKS-GYVNDLFVGNSLITMYAKCGRIQNAELL 512
           DH T    LSAC+H   +  G++   +  K  G    L     ++ +  + G ++ A  L
Sbjct: 526 DHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYEL 585

Query: 513 FKDADPV--DVISWNSLIAGYAINGNA 537
            ++  P+  D   W +L++   I GNA
Sbjct: 586 VRNM-PIQPDASIWGALLSACKIYGNA 611



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 108/497 (21%), Positives = 214/497 (43%), Gaps = 88/497 (17%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           +F    + +     S++  Y++ G ++ A K+F  MP +++ SWN+MI+G+  N     A
Sbjct: 147 VFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGA 206

Query: 97  RELFDKM----FRPDLFSWA-LMITCYTRKGELEKARELFDLLPNKEDTACW--NAMVAG 149
             + ++M     + D  + A ++  C      +        +L +  D+  +  NA++  
Sbjct: 207 LGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINM 266

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----------- 198
           Y+K G   +A+ + D M  +++VSWNS+++ Y +N +   A +FF+ M+           
Sbjct: 267 YSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTV 326

Query: 199 -----------------------------ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP 229
                                        ++DVV  N +++ Y +L  ++ A   F ++P
Sbjct: 327 VSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLP 386

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQM-----PIRNVVAWNAMIAAYVQRGQIEEAA 284
            ++ +SW T+++GY +NG   EA   ++ M      I N   W ++I AY   G +++  
Sbjct: 387 RKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGM 446

Query: 285 RLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDE 344
           ++                             +L+    Y ++   T +I  Y +  R+++
Sbjct: 447 KIH---------------------------AKLIKNSLYLDVFVATCLIDLYGKCGRLED 479

Query: 345 ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQ 400
           A  +F +I     V WN +I      GR +EA+ LF+ M    V  D +T+ ++++  + 
Sbjct: 480 AMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSH 539

Query: 401 IRQMDDAVKIFEEMGKR---RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHST 457
              +D+  K F+ M K    + ++     +   L    +L+  K + L+     + D S 
Sbjct: 540 SGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLE--KAYELVRNMPIQPDASI 597

Query: 458 LACALSACAHLAALQLG 474
               LSAC      +LG
Sbjct: 598 WGALLSACKIYGNAELG 614



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 156/326 (47%), Gaps = 44/326 (13%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S VF  N  I    K GR+++A  +F QM  ++ V++NS+I+AY +N   + A + F+ M
Sbjct: 255 SDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGM 314

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD 132
                      + G                  RPDL +   + + +++  +   +R +  
Sbjct: 315 ----------QLGG-----------------IRPDLLTVVSLTSIFSQLSDQRISRSILG 347

Query: 133 LLPNKE----DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
            +  +E    D    NA+V  YAK+G  N A  + D +P K+ +SWN++++GYT+NG   
Sbjct: 348 FVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLAS 407

Query: 189 LASKFFEAMEE-RDVV----SWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTM 239
            A   +  MEE RD +    +W  ++  Y  +  L    K   K+ +     +V     +
Sbjct: 408 EAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCL 467

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM-PER---NP 295
           +  Y + GR+ +A  LF ++P    V WNA+IA+    G+ EEA +LF +M  ER   + 
Sbjct: 468 IDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADH 527

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQM 321
           +++ +++        +DE ++  D M
Sbjct: 528 ITFVSLLSACSHSGLVDEGQKCFDIM 553



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 16/194 (8%)

Query: 447 TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI 506
           T   K AD + L    ++C ++ A    +++H L +  G   ++ +   LI +Y   G I
Sbjct: 17  TSLHKDADFNAL---FNSCVNVNA---TKKLHALLLVFGKSQNIVLSTKLINLYVTHGDI 70

Query: 507 QNAELLFKDADPVDVISWNSLIAGYAINGNATEAI----KLFEEMVMEGVAPDPVTFIGV 562
             +   F      ++ SWNS+I+ Y   G   EA+    +LF       + PD  TF  +
Sbjct: 71  SLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPI 130

Query: 563 LSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKP 622
           L AC  V LVDG  K   C       E  V   A ++ L SR G LD A ++   M +K 
Sbjct: 131 LKAC--VSLVDG--KKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVK- 185

Query: 623 NAGIWGTLL-GACR 635
           + G W  ++ G C+
Sbjct: 186 DVGSWNAMISGFCQ 199


>gi|297830924|ref|XP_002883344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329184|gb|EFH59603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 824

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 226/777 (29%), Positives = 374/777 (48%), Gaps = 100/777 (12%)

Query: 46  TVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR 105
           T +  S +S   + G    AR+LF+ +P+   V WN++I G++ N+   EA   + +M +
Sbjct: 39  TPSIRSRLSKICQEGNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKK 98

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNK------------EDTACWNAMVAGYAKI 153
              F+       YT    L+   E  +L   K                  N+++  Y   
Sbjct: 99  TAPFTKC---DAYTYSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSC 155

Query: 154 GN----------YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV- 202
            N          Y+  +K+ D M  KN+V+WN+++S Y K G    A + F  M   ++ 
Sbjct: 156 LNAPGSELDCFEYDVVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFAIMMRMEIK 215

Query: 203 ---VSWNLMLDGYVELDDLDSAWKFF--------QKIPEQNVVSWVTMLSGYARNGRMLE 251
              VS+  +         +  A  F+        + + +  VVS  + +S YA  G +  
Sbjct: 216 PSPVSFVNVFPAVATSRSIKKANVFYGLMLKLGDEYVKDLFVVS--SAISMYAELGDLES 273

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER-----NPVSWTTMIDGYV 306
           +RR+FD    RN+  WN MI  YVQ   + E+  LF+E         + V++        
Sbjct: 274 SRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTFLLAASAVS 333

Query: 307 RIAKLDEARRL-------LDQMPYKNIAAQTAMIS--GYVQNKRMDEANQIFDKIGTHDV 357
            + +++  R+          ++P   I +   M S  G+VQ     ++  +F  +   DV
Sbjct: 334 GLQQVELGRQFHGFVSKNFRELPIVIINSLMVMYSRCGFVQ-----KSFGVFHSMRERDV 388

Query: 358 VCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVTWNTMIAGYAQIRQMDD------- 406
           V WN MI  + Q G  DE + L  +M  +    D +T   +++  + +R  +        
Sbjct: 389 VSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHGF 448

Query: 407 ---------------------------AVKIFEEMG-KRRNTVSWNALISGFLQNEFHLD 438
                                      + K+FE  G   R+  +WN++ISG+ QN    +
Sbjct: 449 LIRQGIQFEGMNSYLIDMYAKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEE 508

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
              +F  M ++  + +  T+A  L AC+ + ++ LG+Q+H  +I+     ++FV ++L+ 
Sbjct: 509 TFLVFRKMLEQNIRPNAVTVASILPACSQVGSVDLGKQLHGFSIRQYLDQNVFVASALVD 568

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           MY+K G I+ AE +F      + +++ ++I GY  +G    AI LF  M   G+ PD + 
Sbjct: 569 MYSKAGAIKYAENMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQELGIKPDAIA 628

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
           F+ VLSACS+ GLVD GLK+FE M EVY I+P  EHY C+ D+L R GR++EA+E VKG+
Sbjct: 629 FVAVLSACSYSGLVDEGLKIFEDMREVYNIQPSSEHYCCITDMLGRVGRVNEAYEFVKGL 688

Query: 619 KIKPN-AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKT-SCY-ALLSNMHAEAGRWD 675
             + N A +WG+LLG+CR+H  ++L     E+L++L+  K  S Y  LLSNM+AE   W 
Sbjct: 689 GEEGNIAELWGSLLGSCRLHGELELAETVSERLAKLDKGKNFSGYEVLLSNMYAEEQNWK 748

Query: 676 EVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
            V++VR  M   G +K+ G S IEV   ++ F+S D +   + EI + +  LA  +R
Sbjct: 749 SVDRVRKGMREKGLKKEVGRSGIEVAGHVNCFVSRDQEHPHSGEIYDAIDGLAKNMR 805



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 105/499 (21%), Positives = 211/499 (42%), Gaps = 88/499 (17%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLF-EQMP 73
           +F  +  I+   + G +E + ++F    ++N   +N+MI  Y +N  + ++ +LF E + 
Sbjct: 255 LFVVSSAISMYAELGDLESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIG 314

Query: 74  QRNLVS-------WNSMIAGYLHNDKVKEARELFDKMFR--PDLFSWALMITCYTRKGEL 124
            + +VS         S ++G    +  ++      K FR  P +   +LM+  Y+R G +
Sbjct: 315 SKEIVSDEVTFLLAASAVSGLQQVELGRQFHGFVSKNFRELPIVIINSLMVM-YSRCGFV 373

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSMLSG 180
           +K+  +F  +  + D   WN M++ + + G  +E   L+  M  +    + ++  ++LS 
Sbjct: 374 QKSFGVFHSM-RERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSA 432

Query: 181 ----------------------------------YTKNGEMHLASKFFE--AMEERDVVS 204
                                             Y K+G + ++ K FE     ERD  +
Sbjct: 433 ASNLRNKEIGKQTHGFLIRQGIQFEGMNSYLIDMYAKSGLIRISQKLFEGSGYAERDQAT 492

Query: 205 WNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRM--------LEA 252
           WN M+ GY +    +  +  F+K+ EQN+    V+  ++L   ++ G +           
Sbjct: 493 WNSMISGYTQNGHTEETFLVFRKMLEQNIRPNAVTVASILPACSQVGSVDLGKQLHGFSI 552

Query: 253 RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLD 312
           R+  DQ    NV   +A++  Y + G I+ A  +F +  ERN V++TTMI GY +    +
Sbjct: 553 RQYLDQ----NVFVASALVDMYSKAGAIKYAENMFSQTKERNSVTYTTMILGYGQHGMGE 608

Query: 313 EARRLLDQMPYKNIA----AQTAMISGYVQNKRMDEANQIFDKI--------GTHDVVCW 360
            A  L   M    I     A  A++S    +  +DE  +IF+ +         +    C 
Sbjct: 609 RAISLFLSMQELGIKPDAIAFVAVLSACSYSGLVDEGLKIFEDMREVYNIQPSSEHYCCI 668

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVT--WNTMIAG---YAQIRQMDDAVKIFEEMG 415
             M+    + GR++EA    + +  +  +   W +++     + ++   +   +   ++ 
Sbjct: 669 TDML---GRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCRLHGELELAETVSERLAKLD 725

Query: 416 KRRNTVSWNALISGFLQNE 434
           K +N   +  L+S     E
Sbjct: 726 KGKNFSGYEVLLSNMYAEE 744


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  326 bits (835), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 236/772 (30%), Positives = 371/772 (48%), Gaps = 88/772 (11%)

Query: 44  KNTVTYNSMISAYAKN--GRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFD 101
            NT   N++IS Y     G    A+++F+  P R+L++WN++++ Y     V     LF 
Sbjct: 195 SNTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFM 254

Query: 102 KMF--------RPDLFSWALMITCYT----RKGELEKARELFDLLPNKEDTACWNAMVAG 149
            M         RP+  ++  +IT  +      G L++         +  D    +A+V+ 
Sbjct: 255 AMLHDDSAIELRPNEHTFGSLITATSLSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSA 314

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV---SWN 206
           +A+ G  +EAK +   +  +N V+ N ++ G  K      A   F    +  VV   ++ 
Sbjct: 315 FARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFMGTRDSFVVNTDTFV 374

Query: 207 LMLDGYVEL----DDLDSAWKFFQKIPEQNVVSWVTMLSG-----YARNGRMLEARRLFD 257
           ++L    E     D L    +    I    ++     LS      YA+ G + +A R+F 
Sbjct: 375 VLLSAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFR 434

Query: 258 QMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER--NPVSWTTMIDGYVRIAKL---- 311
            +  R+ V+WN +I+   Q G  E A   +  M +   +P ++   I G    A L    
Sbjct: 435 LLCARDRVSWNTIISVLDQNGFCEGAMMNYCMMRQGCISPSNFAA-ISGLSSCASLRLLT 493

Query: 312 -------DEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWN--- 361
                  D  +  LD     + +   A++  Y       E+ +IF+ +  HD+V WN   
Sbjct: 494 AGQQVHCDAVKWGLDL----DTSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIM 549

Query: 362 -VMIKGYAQCGRMDEAI-NLFRQMVNKDIVTW---------------------------- 391
            VM+  +A      E   N+ R  +  + VT+                            
Sbjct: 550 GVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGA 609

Query: 392 -------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFV 444
                  N +++ YA+   MD   ++F  M  RR+ VSWN++ISG++ N    + +    
Sbjct: 610 IEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVW 669

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG 504
           LM    +  D  T +  L+ACA +AAL+ G ++H   I+S   +D+ V ++L+ MY+KCG
Sbjct: 670 LMMHSNQMLDCCTFSIVLNACASVAALERGMEMHAFGIRSQLESDVVVESALLDMYSKCG 729

Query: 505 RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLS 564
           RI  A  +F      +  SWNS+I+GYA +G   +A+++FEEM   G  PD VTF+ VLS
Sbjct: 730 RIDYASKVFNSMSQKNEFSWNSMISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLS 789

Query: 565 ACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNA 624
           ACSH GLVD GL  FE M E + I P +EHY+C+IDLL RAG+L +  E +  M +KPN 
Sbjct: 790 ACSHAGLVDRGLDYFE-MMEDHGILPHIEHYSCVIDLLGRAGKLLKIQEYINRMPMKPNT 848

Query: 625 GIWGTLLGACRMHQN---IKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVR 681
            IW T+L ACR  ++   I LG+ A   L ELEPQ    Y L SN +A  GRW++  K R
Sbjct: 849 LIWRTVLVACRQSKDGDRIDLGKEASRMLLELEPQNPVNYVLASNFYAATGRWEDTAKAR 908

Query: 682 VSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
            +M G+  +K+ G SW+ + + +HTF++GD     T EI   L  L  +I+N
Sbjct: 909 AAMGGAAMKKEAGQSWVTLGDGVHTFIAGDRSHPNTKEIYEKLNFLIQKIKN 960



 Score =  183 bits (465), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 164/692 (23%), Positives = 309/692 (44%), Gaps = 100/692 (14%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----- 104
           N +++ YAK  R+  AR++F+ M +RN VSW  +++GY+ +    EA  +F  M      
Sbjct: 95  NHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSGITDEAFRVFKAMLWEGSE 154

Query: 105 --RPDLFSWALMITCYTRKGE--LEKARELFDLLPNK---EDTACWNAMVAGYA--KIGN 155
             RP  F++  ++      G   L  A ++  L+       +T   NA+++ Y    +G 
Sbjct: 155 FSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYASNTTVCNALISMYGNCSVGL 214

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD-------------- 201
             +A+++ D  P +++++WN+++S Y K G +      F AM   D              
Sbjct: 215 PLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELRPNEHTFGS 274

Query: 202 -VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
            + + +L       LD + +  +  +     ++     ++S +AR+G + EA+ +F  + 
Sbjct: 275 LITATSLSSCSSGVLDQVFA--RVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINLK 332

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMI-------------DGYVR 307
            RN V  N +I   V++   EEA  +F+   +   V+  T +             DG +R
Sbjct: 333 ERNAVTLNGLIVGLVKQHCSEEAVGIFMGTRDSFVVNTDTFVVLLSAVAEFSIPEDGLMR 392

Query: 308 IAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367
             ++     L   +    IA    +++ Y +   +D+A+++F  +   D V WN +I   
Sbjct: 393 GREV-HGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVL 451

Query: 368 AQCGRMDEAINLF------------------------------RQMVNKDIVTW------ 391
            Q G  + A+  +                               Q V+ D V W      
Sbjct: 452 DQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDT 511

Query: 392 ---NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHL-DALKIFVLMT 447
              N ++  Y       ++ +IF  M +  + VSWN+++   + +     +++++F  M 
Sbjct: 512 SVSNALVKMYGDCGARSESWEIFNSMAE-HDIVSWNSIMGVMVSSHAPTAESVEVFSNMM 570

Query: 448 QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
           + G   +  T    LSA + L+ L+LG+Q+H + +K G + D  V N+L++ YAK G + 
Sbjct: 571 RSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDMD 630

Query: 508 NAELLFKD-ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
           + E LF   +   D +SWNS+I+GY  NG+  E +     M+      D  TF  VL+AC
Sbjct: 631 SCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNAC 690

Query: 567 SHVGLVDGGLKLFECMTEVYAIEPLVEH----YACMIDLLSRAGRLDEAFEMVKGMKIKP 622
           + V  ++ G+++       + I   +E      + ++D+ S+ GR+D A ++   M  K 
Sbjct: 691 ASVAALERGMEM-----HAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMSQK- 744

Query: 623 NAGIWGTLLGACRMHQNIKLGRIAVEKLSELE 654
           N   W +++     H    LG  A+E   E++
Sbjct: 745 NEFSWNSMISGYARH---GLGEKALEIFEEMQ 773



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 133/280 (47%), Gaps = 28/280 (10%)

Query: 377 INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
           + L ++ +  D+   N ++  YA+  ++  A ++F+ M   RN VSW  L+SG++ +   
Sbjct: 80  LELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGM-LERNAVSWTCLVSGYVLSGIT 138

Query: 437 LDALKIFVLMTQEGKKADHST---LACALSAC--AHLAALQLGRQIHHLAIKSGYVNDLF 491
            +A ++F  M  EG +    T       L AC  A    L    Q+H L  K+ Y ++  
Sbjct: 139 DEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYASNTT 198

Query: 492 VGNSLITMYAKC--GRIQNAELLFKDADPV-DVISWNSLIAGYAINGNATEAIKLFEEMV 548
           V N+LI+MY  C  G    A+ +F D  PV D+I+WN+L++ YA  G       LF  M+
Sbjct: 199 VCNALISMYGNCSVGLPLQAQQVF-DTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAML 257

Query: 549 MEGVA----PDPVTFIGVLSACSHVGLVDGGL-KLFE------CMTEVYAIEPLVEHYAC 597
            +  A    P+  TF  +++A S      G L ++F         +++Y    LV  +A 
Sbjct: 258 HDDSAIELRPNEHTFGSLITATSLSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSAFA- 316

Query: 598 MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMH 637
                 R G LDEA ++   +K +    + G ++G  + H
Sbjct: 317 ------RHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQH 350



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 113/492 (22%), Positives = 200/492 (40%), Gaps = 135/492 (27%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
            N  +    K G +++A ++F  +  ++ V++N++IS   +NG    A   +  M Q  +
Sbjct: 413 SNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVLDQNGFCEGAMMNYCMMRQGCI 472

Query: 78  VSWN-SMIAGY--------------LHNDKVK------------------------EARE 98
              N + I+G               +H D VK                        E+ E
Sbjct: 473 SPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWE 532

Query: 99  LFDKMFRPDLFSW-ALMITCYTRKGELEKARELFD------LLPNK-------------- 137
           +F+ M   D+ SW ++M    +      ++ E+F       L PNK              
Sbjct: 533 IFNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLS 592

Query: 138 ------------------EDTACWNAMVAGYAKIGNYNEAKKLLDAMPS-KNIVSWNSML 178
                             ED A  NA+++ YAK G+ +  ++L  +M   ++ VSWNSM+
Sbjct: 593 VLELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMI 652

Query: 179 SGYTKNGE-----------MHL--------------ASKFFEAME--------------E 199
           SGY  NG            MH               A     A+E              E
Sbjct: 653 SGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNACASVAALERGMEMHAFGIRSQLE 712

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM 259
            DVV  + +LD Y +   +D A K F  + ++N  SW +M+SGYAR+G   +A  +F++M
Sbjct: 713 SDVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSWNSMISGYARHGLGEKALEIFEEM 772

Query: 260 ----PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-----SWTTMIDGYVRIAK 310
                  + V + ++++A    G ++     F EM E + +      ++ +ID   R  K
Sbjct: 773 QRNGACPDHVTFVSVLSACSHAGLVDRGLDYF-EMMEDHGILPHIEHYSCVIDLLGRAGK 831

Query: 311 LDEARRLLDQMPYK-NIAAQTAMISGYVQNK---RMD---EANQIFDKIGTHDVVCWNVM 363
           L + +  +++MP K N      ++    Q+K   R+D   EA+++  ++   + V + + 
Sbjct: 832 LLKIQEYINRMPMKPNTLIWRTVLVACRQSKDGDRIDLGKEASRMLLELEPQNPVNYVLA 891

Query: 364 IKGYAQCGRMDE 375
              YA  GR ++
Sbjct: 892 SNFYAATGRWED 903



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 112/217 (51%), Gaps = 22/217 (10%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V N    +  L + G    A  I SQ+ + + V  ++++  Y+K GR++ A K+F  M
Sbjct: 684 SIVLNACASVAALER-GMEMHAFGIRSQL-ESDVVVESALLDMYSKCGRIDYASKVFNSM 741

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAR 128
            Q+N  SWNSMI+GY  +   ++A E+F++M R    PD  ++  +++  +  G +++  
Sbjct: 742 SQKNEFSWNSMISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGL 801

Query: 129 ELFDL------LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK-NIVSWNSMLSG- 180
           + F++      LP+ E  +C   ++    + G   + ++ ++ MP K N + W ++L   
Sbjct: 802 DYFEMMEDHGILPHIEHYSC---VIDLLGRAGKLLKIQEYINRMPMKPNTLIWRTVLVAC 858

Query: 181 -YTKNGEM----HLASKFFEAMEERDVVSWNLMLDGY 212
             +K+G+       AS+    +E ++ V++ L  + Y
Sbjct: 859 RQSKDGDRIDLGKEASRMLLELEPQNPVNYVLASNFY 895



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 3/98 (3%)

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
           ++H   +K G  +DLF+ N L+ +YAK  R+  A  +F      + +SW  L++GY ++G
Sbjct: 77  RLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSG 136

Query: 536 NATEAIKLFEEMVMEGVA---PDPVTFIGVLSACSHVG 570
              EA ++F+ M+ EG     P P TF  VL AC   G
Sbjct: 137 ITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAG 174


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 189/549 (34%), Positives = 301/549 (54%), Gaps = 29/549 (5%)

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
           N +++ Y +LD  +SA    +  P +NVVSW +++SG A+NG    A   F +M  R  V
Sbjct: 46  NYLINMYSKLDHPESARLVLRLTPARNVVSWTSLVSGLAQNGHFSTALFEFFEMR-REGV 104

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----------WTTMIDGYVRIAKLDEA 314
           A N      V +     + RL +   + + ++             +  D Y +    D+A
Sbjct: 105 APNDFTFPCVFKAV--ASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDA 162

Query: 315 RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI----GTHDVVCWNVMIKGYAQC 370
           R+L D++P +N+    A IS  V + R  EA + F +     G  + + +   +   +  
Sbjct: 163 RKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFIEFRRIGGQPNSITFCGFLNACSDG 222

Query: 371 GRMDEAINL----FRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNAL 426
             +D  + +    FR   + D+  +N +I  Y + +Q+  +  IF EMG  +N VSW +L
Sbjct: 223 LLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGM-KNAVSWCSL 281

Query: 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
           ++ ++QN     A  +++   +E  +     ++  LSACA +A L+LGR IH  A+K+  
Sbjct: 282 VAAYVQNHEDEKASVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACV 341

Query: 487 VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEE 546
             ++FVG++L+ MY KCG I+++E  F +    ++++ NSLI GYA  G    A+ LFE+
Sbjct: 342 ERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQVDMALALFED 401

Query: 547 MVMEGVAPDP--VTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSR 604
           M   G  P P  +TF+ +LSACS  G V+ G+K+F+ M   Y IEP  EHY+C++D+L R
Sbjct: 402 MAPRGCGPAPNYMTFVSLLSACSRAGAVENGMKIFDSMKSTYGIEPGAEHYSCIVDMLGR 461

Query: 605 AGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALL 664
           AG +++AFE +K M IKP   +WG L  ACRMH    LG +A E L +L+P+ +  + LL
Sbjct: 462 AGMVEQAFEFIKKMPIKPTISVWGALQNACRMHGKPHLGILAAENLFKLDPKDSGNHVLL 521

Query: 665 SNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTL 724
           SN  A AGRW E   VR  M+G G +K  G SWI VKNQ+H F + D    R+ ++   +
Sbjct: 522 SNTFAAAGRWAEANTVREEMKGVGIKKGAGYSWITVKNQVHAFQAKD----RSHKMNKEI 577

Query: 725 KTLAAQIRN 733
           +T+  ++RN
Sbjct: 578 QTMLTKLRN 586



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 137/292 (46%), Gaps = 21/292 (7%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----P 106
           S    Y K    +DARKLF+++P+RNL +WN+ I+  + + + KEA E F +  R    P
Sbjct: 148 SAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFIEFRRIGGQP 207

Query: 107 DLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLL 163
           +  ++   +   +    L+   ++  L+       D + +N ++  Y K      ++ + 
Sbjct: 208 NSITFCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIF 267

Query: 164 DAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWK 223
             M  KN VSW S+++ Y +N E   AS  +    +  V + + M+   +      +  +
Sbjct: 268 AEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMISSVLSACAGMAGLE 327

Query: 224 FFQKIP--------EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
             + I         E+N+     ++  Y + G + ++ + FD+MP +N+V  N++I  Y 
Sbjct: 328 LGRSIHAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTLNSLIGGYA 387

Query: 276 QRGQIEEAARLFIEM------PERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
            +GQ++ A  LF +M      P  N +++ +++    R   ++   ++ D M
Sbjct: 388 HQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGMKIFDSM 439



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 161/393 (40%), Gaps = 95/393 (24%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER--- 200
           N ++  Y+K+ +   A+ +L   P++N+VSW S++SG  +NG  H ++  FE  E R   
Sbjct: 46  NYLINMYSKLDHPESARLVLRLTPARNVVSWTSLVSGLAQNG--HFSTALFEFFEMRREG 103

Query: 201 --------------------------------------DVVSWNLMLDGYVELDDLDSAW 222
                                                 DV       D Y +    D A 
Sbjct: 104 VAPNDFTFPCVFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDAR 163

Query: 223 KFFQKIPEQNVVSWVTMLSGYARNGR-------MLEARRLFDQ----------------- 258
           K F +IPE+N+ +W   +S    +GR        +E RR+  Q                 
Sbjct: 164 KLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFIEFRRIGGQPNSITFCGFLNACSDGL 223

Query: 259 -----MPIRNVV----------AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMID 303
                M +  +V           +N +I  Y +  QI  +  +F EM  +N VSW +++ 
Sbjct: 224 LLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVA 283

Query: 304 GYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH-------- 355
            YV+  + ++A  L  +   + +     MIS  +         ++   I  H        
Sbjct: 284 AYVQNHEDEKASVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVER 343

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMG 415
           ++   + ++  Y +CG ++++   F +M  K++VT N++I GYA   Q+D A+ +FE+M 
Sbjct: 344 NIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQVDMALALFEDMA 403

Query: 416 KR-----RNTVSWNALISGFLQNEFHLDALKIF 443
            R      N +++ +L+S   +     + +KIF
Sbjct: 404 PRGCGPAPNYMTFVSLLSACSRAGAVENGMKIF 436



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 116/273 (42%), Gaps = 37/273 (13%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           +F      +   YN +I  Y K  ++  +  +F +M  +N VSW S++A Y+ N + ++A
Sbjct: 235 VFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKA 294

Query: 97  RELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTAC-------WNAMVAG 149
             L+ +  +  + +   MI+            EL   +      AC        +A+V  
Sbjct: 295 SVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERNIFVGSALVDM 354

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML 209
           Y K G   ++++  D MP KN+V+ NS++ GY   G++ +A   FE M  R         
Sbjct: 355 YGKCGCIEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCG------ 408

Query: 210 DGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA--- 266
                              P  N +++V++LS  +R G +    ++FD M     +    
Sbjct: 409 -------------------PAPNYMTFVSLLSACSRAGAVENGMKIFDSMKSTYGIEPGA 449

Query: 267 --WNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
             ++ ++    + G +E+A     +MP +  +S
Sbjct: 450 EHYSCIVDMLGRAGMVEQAFEFIKKMPIKPTIS 482



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 17/162 (10%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           ++N    ++++  Y K G + D+ + F++MP++NLV+ NS+I GY H  +V  A  LF+ 
Sbjct: 342 ERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQVDMALALFED 401

Query: 103 MF------RPDLFSWALMITCYTRKGELEKARELFDLL-------PNKEDTACWNAMVAG 149
           M        P+  ++  +++  +R G +E   ++FD +       P  E  +C   M+  
Sbjct: 402 MAPRGCGPAPNYMTFVSLLSACSRAGAVENGMKIFDSMKSTYGIEPGAEHYSCIVDML-- 459

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVS-WNSMLSGYTKNGEMHLA 190
             + G   +A + +  MP K  +S W ++ +    +G+ HL 
Sbjct: 460 -GRAGMVEQAFEFIKKMPIKPTISVWGALQNACRMHGKPHLG 500



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/273 (22%), Positives = 124/273 (45%), Gaps = 39/273 (14%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I   GK  ++  +  IF++M  KN V++ S+++AY +N     A  L+ +  +  + 
Sbjct: 248 NGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVE 307

Query: 79  SWNSMIAGYL---------------HNDKVKEARELFDKMFRPDLFSWALMITCYTRKGE 123
           + + MI+  L               H   VK   E        ++F  + ++  Y + G 
Sbjct: 308 TSDFMISSVLSACAGMAGLELGRSIHAHAVKACVER-------NIFVGSALVDMYGKCGC 360

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM------PSKNIVSWNSM 177
           +E + + FD +P K +    N+++ GYA  G  + A  L + M      P+ N +++ S+
Sbjct: 361 IEDSEQAFDEMPEK-NLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSL 419

Query: 178 LSGYTKNGEMHLASKFFEAME-----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQN 232
           LS  ++ G +    K F++M+     E     ++ ++D       ++ A++F +K+P + 
Sbjct: 420 LSACSRAGAVENGMKIFDSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIKP 479

Query: 233 VVS-WVTMLSGYARNGR----MLEARRLFDQMP 260
            +S W  + +    +G+    +L A  LF   P
Sbjct: 480 TISVWGALQNACRMHGKPHLGILAAENLFKLDP 512



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 11/143 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM-- 72
           +F  +  +   GK G +E++ + F +M +KN VT NS+I  YA  G+V+ A  LFE M  
Sbjct: 345 IFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQVDMALALFEDMAP 404

Query: 73  ----PQRNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGE 123
               P  N +++ S+++       V+   ++FD M       P    ++ ++    R G 
Sbjct: 405 RGCGPAPNYMTFVSLLSACSRAGAVENGMKIFDSMKSTYGIEPGAEHYSCIVDMLGRAGM 464

Query: 124 LEKARELFDLLPNKEDTACWNAM 146
           +E+A E    +P K   + W A+
Sbjct: 465 VEQAFEFIKKMPIKPTISVWGAL 487



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 1/104 (0%)

Query: 469 AALQLGRQIHHLAIKS-GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSL 527
           ++++LGR +H   +K+       F+ N LI MY+K    ++A L+ +     +V+SW SL
Sbjct: 20  SSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSL 79

Query: 528 IAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
           ++G A NG+ + A+  F EM  EGVAP+  TF  V  A + + L
Sbjct: 80  VSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRL 123


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 186/590 (31%), Positives = 307/590 (52%), Gaps = 40/590 (6%)

Query: 165 AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKF 224
           A P   ++++ ++      +G++H A   F  +E+ +   WN M+ GY        A+ F
Sbjct: 189 AFPVSRVIAFCAL----AHSGDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSF 244

Query: 225 F----QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW-----------NA 269
           F    Q   E +  S+V  L    +   + E   ++        V W           N 
Sbjct: 245 FVYMFQLRVEMDSRSFVFALKACQQFETVFEGESVY-------CVVWKMGFDCELLVRNG 297

Query: 270 MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
           +I  Y +RG ++ A ++F E  +++ V+WTTMIDGY      +EA  + + M   ++   
Sbjct: 298 LIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPN 357

Query: 330 ----TAMISGYVQNKRMDEANQIFDKIGTHDVVC----WNVMIKGYAQCGRMDEAINLFR 381
                A++S       ++   ++ +K+   ++ C     N ++  Y +C  + +A  LF 
Sbjct: 358 EVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFD 417

Query: 382 QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALK 441
           +M  KD+ +W +M+ GYA+   ++ A + F++   R+N V W+A+I+G+ QN    ++LK
Sbjct: 418 RMATKDVYSWTSMVNGYAKCGDLESARRFFDQT-PRKNAVCWSAMIAGYSQNNKPKESLK 476

Query: 442 IFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN-DLFVGNSLITMY 500
           +F  M + G      TL   LSAC  L  L LG  IH   +    +   + + N+++ MY
Sbjct: 477 LFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMY 536

Query: 501 AKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
           AKCG I  A  +F      ++ISWN++IAGYA NG A +AI +F++M   G  P+ +TF+
Sbjct: 537 AKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFV 596

Query: 561 GVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKI 620
            +L+ACSH GL+  G + F+ M   Y I+P   HYACM+DLL R G L+EA++++  M +
Sbjct: 597 SLLTACSHGGLISEGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMPM 656

Query: 621 KPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKV 680
           +P    WG LL ACRMH N++L R++   L  L+P+ +  Y LL+N  A   +W +V +V
Sbjct: 657 QPCEAAWGALLNACRMHGNVELARLSAHNLLRLDPEDSGIYVLLANTCANDRKWSDVRRV 716

Query: 681 RVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI----CNTLKT 726
           R  M+  G +K PG S IE+      FL  D    ++ EI    C+ L +
Sbjct: 717 RSLMKDKGVKKIPGYSLIEIDGGFVEFLVADESHPQSEEIYKLECDNLSS 766



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 120/474 (25%), Positives = 220/474 (46%), Gaps = 67/474 (14%)

Query: 10  NKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMIS------AYAKNGRVN 63
           N  + V   N  +  +     + +  +I ++M+    +T+   +S      A A +G ++
Sbjct: 149 NSPTNVIITNPTLLIMESCSTMRQLKQIQARMTLTGIITHAFPVSRVIAFCALAHSGDLH 208

Query: 64  DARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF--------RPDLFS----- 110
            A  +F ++ Q N   WN+MI GY +  K   A   F  MF        R  +F+     
Sbjct: 209 YAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQ 268

Query: 111 ---------------WALMITC-----------YTRKGELEKARELFDLLPNKEDTACWN 144
                          W +   C           Y  +G L+ AR++FD   +K D   W 
Sbjct: 269 QFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDK-DVVTWT 327

Query: 145 AMVAGYAKIGNYNEAKKLLDAM----PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER 200
            M+ GYA      EA ++ + M       N V+  +++S  +  G + +  +  E +EE+
Sbjct: 328 TMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEK 387

Query: 201 DVVS----WNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF 256
           ++       N +LD YV+ D L  A + F ++  ++V SW +M++GYA+ G +  ARR F
Sbjct: 388 NMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFF 447

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWT--TMIDGYVRIAKLD 312
           DQ P +N V W+AMIA Y Q  + +E+ +LF EM ER   P+  T  +++    ++  L+
Sbjct: 448 DQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLN 507

Query: 313 -----EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367
                    ++ ++   ++  + A++  Y +   +D A ++F  +   +++ WN MI GY
Sbjct: 508 LGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGY 567

Query: 368 AQCGRMDEAINLFRQMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
           A  GR  +AIN+F QM N       +T+ +++   +    + +  + F+ M ++
Sbjct: 568 AANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERK 621



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 147/313 (46%), Gaps = 55/313 (17%)

Query: 33  EAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDK 92
           +A ++F +M+ K+  ++ SM++ YAK G +  AR+ F+Q P++N V W++MIAGY  N+K
Sbjct: 411 DARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNK 470

Query: 93  VKEARELFDKMFRP----------DLFSWALMITCYTRKGELEKARELFDLLPNKEDTAC 142
            KE+ +LF +M              + S    +TC      + +   +  ++P       
Sbjct: 471 PKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIP--LSVTL 528

Query: 143 WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV 202
            NA+V  YAK G+ + A ++   MP +N++SWN+M++GY  NG    A   F+ M     
Sbjct: 529 ENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNM-- 586

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM--- 259
                   G+                 E N +++V++L+  +  G + E R  FD M   
Sbjct: 587 --------GF-----------------EPNNITFVSLLTACSHGGLISEGREYFDNMERK 621

Query: 260 ----PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMID-----GYVRIA 309
               P R   A   M+    + G +EEA +L   MP +    +W  +++     G V +A
Sbjct: 622 YGIKPERGHYA--CMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVELA 679

Query: 310 KLDEARRLLDQMP 322
           +L  A  LL   P
Sbjct: 680 RLS-AHNLLRLDP 691



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 121/283 (42%), Gaps = 41/283 (14%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V++    +    K G +E A + F Q  +KN V +++MI+ Y++N +  ++ KLF +M +
Sbjct: 424 VYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMME 483

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFD---------KMFRPDLFSWALMITCYTRKGELE 125
           R +V     +   L          L D         K+    +     ++  Y + G ++
Sbjct: 484 RGVVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSID 543

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS----KNIVSWNSMLSGY 181
            A E+F  +P + +   WN M+AGYA  G   +A  + D M +     N +++ S+L+  
Sbjct: 544 AATEVFSTMPER-NLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTAC 602

Query: 182 TKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
           +  G +    ++F+ ME +  +                         PE+    +  M+ 
Sbjct: 603 SHGGLISEGREYFDNMERKYGIK------------------------PERG--HYACMVD 636

Query: 242 GYARNGRMLEARRLFDQMPIRNV-VAWNAMIAAYVQRGQIEEA 283
              R G + EA +L   MP++    AW A++ A    G +E A
Sbjct: 637 LLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVELA 679



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 9/152 (5%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP---- 73
           +N  +    K G ++ A ++FS M ++N +++N+MI+ YA NGR   A  +F+QM     
Sbjct: 529 ENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGF 588

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKAR 128
           + N +++ S++    H   + E RE FD M R     P+   +A M+    R G LE+A 
Sbjct: 589 EPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLEEAY 648

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
           +L   +P +   A W A++      GN   A+
Sbjct: 649 KLIANMPMQPCEAAWGALLNACRMHGNVELAR 680


>gi|414884999|tpg|DAA61013.1| TPA: hypothetical protein ZEAMMB73_343744 [Zea mays]
          Length = 557

 Score =  325 bits (834), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 165/434 (38%), Positives = 257/434 (59%), Gaps = 4/434 (0%)

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
           N++++ Y+  G    A RL  ++P  + V+W T++  ++R+  L  ARRL D+MP +++ 
Sbjct: 125 NSLLSLYLSHGSTASARRLLADIPRPDTVTWNTLLRSFLRMGLLPAARRLFDEMPERDLV 184

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD 387
              +M+SGY     +  A ++FD +   DVV WN M+ GYAQ G M+ A  LF  M  +D
Sbjct: 185 TYNSMLSGYAAEGDIANARELFDGMPERDVVTWNSMLAGYAQRGDMESAKRLFDVMPVRD 244

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF-VLM 446
           +V+WN+M+ GYAQ   ++    +F+ M  RR+TVSWN +++ + + +   + L +F  +M
Sbjct: 245 VVSWNSMLDGYAQTGDIEMTRMVFDGM-PRRSTVSWNVVLALYAKVKDWHECLNLFDAMM 303

Query: 447 TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS--GYVNDLFVGNSLITMYAKCG 504
              G K +  T    L+AC HL  L+ GR +HHL  +S    + D+ +  +++TMYAKCG
Sbjct: 304 AVGGSKPNEKTFVSVLTACGHLGDLERGRWVHHLVHESWERLLPDVLLLTAMMTMYAKCG 363

Query: 505 RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLS 564
            +  A+ +F       V SWNS+I GY ++G + +A++LF EM   G  P+  TFI +LS
Sbjct: 364 VMGTAKEIFDLMTERSVASWNSMIIGYGLHGYSEKALELFMEMEKNGPQPNETTFICILS 423

Query: 565 ACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNA 624
           +C+H GLV  G   F+ M   Y IEP  EH+ CM+DLL RAG L ++  ++  ++ K + 
Sbjct: 424 SCAHGGLVLEGWWCFDRMVRFYNIEPKAEHFGCMMDLLGRAGLLRDSENLINNLQAKVSP 483

Query: 625 GIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSM 684
            +WG L+ A R   + KLG     KL E++P + S Y LLSN++A  GRWD+VEKVR  M
Sbjct: 484 ALWGALISASRTQDSSKLGEFIGTKLIEMKPTEFSSYVLLSNIYATEGRWDDVEKVRKVM 543

Query: 685 EGSGAQKQPGCSWI 698
           +    +K  G S +
Sbjct: 544 KEKVVEKDVGMSLV 557



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 172/336 (51%), Gaps = 45/336 (13%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           N++++ Y   G+   A++LL  +P  + V+WN++L  + + G +  A + F+ M ERD+V
Sbjct: 125 NSLLSLYLSHGSTASARRLLADIPRPDTVTWNTLLRSFLRMGLLPAARRLFDEMPERDLV 184

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRN 263
           ++N ML GY    D+ +A + F  +PE++VV+W +ML+GYA+ G M  A+RLFD MP+R+
Sbjct: 185 TYNSMLSGYAAEGDIANARELFDGMPERDVVTWNSMLAGYAQRGDMESAKRLFDVMPVRD 244

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM-- 321
           VV+WN+M+  Y Q G IE    +F  MP R+ VSW  ++  Y ++    E   L D M  
Sbjct: 245 VVSWNSMLDGYAQTGDIEMTRMVFDGMPRRSTVSWNVVLALYAKVKDWHECLNLFDAMMA 304

Query: 322 -----PYKNIAAQTAMISGYVQNKRMDE-----ANQIFDKIGTHDVVCWNVMIKGYAQCG 371
                P +          G++ +           ++ ++++   DV+    M+  YA+CG
Sbjct: 305 VGGSKPNEKTFVSVLTACGHLGDLERGRWVHHLVHESWERL-LPDVLLLTAMMTMYAKCG 363

Query: 372 RMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFL 431
            M  A  +F  M  + + +WN+MI GY                            + G+ 
Sbjct: 364 VMGTAKEIFDLMTERSVASWNSMIIGYG---------------------------LHGYS 396

Query: 432 QNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
           +      AL++F+ M + G + + +T  C LS+CAH
Sbjct: 397 EK-----ALELFMEMEKNGPQPNETTFICILSSCAH 427



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 166/303 (54%), Gaps = 18/303 (5%)

Query: 7   SIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDAR 66
           S G+  S +   N  ++     G    A ++ + + + +TVT+N+++ ++ + G +  AR
Sbjct: 113 SYGHLPSDLRLANSLLSLYLSHGSTASARRLLADIPRPDTVTWNTLLRSFLRMGLLPAAR 172

Query: 67  KLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEK 126
           +LF++MP+R+LV++NSM++GY     +  ARELFD M   D+ +W  M+  Y ++G++E 
Sbjct: 173 RLFDEMPERDLVTYNSMLSGYAAEGDIANARELFDGMPERDVVTWNSMLAGYAQRGDMES 232

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           A+ LFD++P + D   WN+M+ GYA+ G+    + + D MP ++ VSWN +L+ Y K  +
Sbjct: 233 AKRLFDVMPVR-DVVSWNSMLDGYAQTGDIEMTRMVFDGMPRRSTVSWNVVLALYAKVKD 291

Query: 187 MHLASKFFEAM--------EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ------N 232
            H     F+AM         E+  VS   +L     L DL+        + E       +
Sbjct: 292 WHECLNLFDAMMAVGGSKPNEKTFVS---VLTACGHLGDLERGRWVHHLVHESWERLLPD 348

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE 292
           V+    M++ YA+ G M  A+ +FD M  R+V +WN+MI  Y   G  E+A  LF+EM +
Sbjct: 349 VLLLTAMMTMYAKCGVMGTAKEIFDLMTERSVASWNSMIIGYGLHGYSEKALELFMEMEK 408

Query: 293 RNP 295
             P
Sbjct: 409 NGP 411



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 153/286 (53%), Gaps = 22/286 (7%)

Query: 114 MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS 173
           +++ Y   G    AR L   +P + DT  WN ++  + ++G    A++L D MP +++V+
Sbjct: 127 LLSLYLSHGSTASARRLLADIP-RPDTVTWNTLLRSFLRMGLLPAARRLFDEMPERDLVT 185

Query: 174 WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV 233
           +NSMLSGY   G++  A + F+ M ERDVV+WN ML GY +  D++SA + F  +P ++V
Sbjct: 186 YNSMLSGYAAEGDIANARELFDGMPERDVVTWNSMLAGYAQRGDMESAKRLFDVMPVRDV 245

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM--- 290
           VSW +ML GYA+ G +   R +FD MP R+ V+WN ++A Y +     E   LF  M   
Sbjct: 246 VSWNSMLDGYAQTGDIEMTRMVFDGMPRRSTVSWNVVLALYAKVKDWHECLNLFDAMMAV 305

Query: 291 --PERNPVSWTTMIDGYVRIAKLDEAR-----------RLLDQMPYKNIAAQTAMISGYV 337
              + N  ++ +++     +  L+  R           RLL      ++   TAM++ Y 
Sbjct: 306 GGSKPNEKTFVSVLTACGHLGDLERGRWVHHLVHESWERLL-----PDVLLLTAMMTMYA 360

Query: 338 QNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
           +   M  A +IFD +    V  WN MI GY   G  ++A+ LF +M
Sbjct: 361 KCGVMGTAKEIFDLMTERSVASWNSMIIGYGLHGYSEKALELFMEM 406



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 146/287 (50%), Gaps = 47/287 (16%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +    + G +  A ++F +M +++ VTYNSM+S YA  G + +AR+LF+ MP+R++V
Sbjct: 156 NTLLRSFLRMGLLPAARRLFDEMPERDLVTYNSMLSGYAAEGDIANARELFDGMPERDVV 215

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           +WNSM+AGY     ++ A+ LFD M   D+ SW  M+  Y + G++E  R +FD +P + 
Sbjct: 216 TWNSMLAGYAQRGDMESAKRLFDVMPVRDVVSWNSMLDGYAQTGDIEMTRMVFDGMP-RR 274

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAM-------PSKNIV------------------- 172
            T  WN ++A YAK+ +++E   L DAM       P++                      
Sbjct: 275 STVSWNVVLALYAKVKDWHECLNLFDAMMAVGGSKPNEKTFVSVLTACGHLGDLERGRWV 334

Query: 173 ------SW----------NSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELD 216
                 SW           +M++ Y K G M  A + F+ M ER V SWN M+ GY    
Sbjct: 335 HHLVHESWERLLPDVLLLTAMMTMYAKCGVMGTAKEIFDLMTERSVASWNSMIIGYGLHG 394

Query: 217 DLDSAWKFFQKI----PEQNVVSWVTMLSGYARNGRMLEARRLFDQM 259
             + A + F ++    P+ N  +++ +LS  A  G +LE    FD+M
Sbjct: 395 YSEKALELFMEMEKNGPQPNETTFICILSSCAHGGLVLEGWWCFDRM 441



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 113/249 (45%), Gaps = 15/249 (6%)

Query: 454 DHSTLACALSACAHLA-ALQLGRQIHHLAIKSGYV-NDLFVGNSLITMYAKCGRIQNAEL 511
           DH TL    SA  H A +L     +H L +  G++ +DL + NSL+++Y   G   +A  
Sbjct: 83  DHLTLLLLSSAKHHHAQSLPAACALHALGLSYGHLPSDLRLANSLLSLYLSHGSTASARR 142

Query: 512 LFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
           L  D    D ++WN+L+  +   G    A +LF+EM       D VT+  +LS  +  G 
Sbjct: 143 LLADIPRPDTVTWNTLLRSFLRMGLLPAARRLFDEMPER----DLVTYNSMLSGYAAEGD 198

Query: 572 VDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           +    +LF+ M E   +      +  M+   ++ G ++ A  +   M ++ +   W ++L
Sbjct: 199 IANARELFDGMPERDVVT-----WNSMLAGYAQRGDMESAKRLFDVMPVR-DVVSWNSML 252

Query: 632 GACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQK 691
                  +I++ R+  + +     + T  + ++  ++A+   W E   +  +M   G  K
Sbjct: 253 DGYAQTGDIEMTRMVFDGMPR---RSTVSWNVVLALYAKVKDWHECLNLFDAMMAVGGSK 309

Query: 692 QPGCSWIEV 700
               +++ V
Sbjct: 310 PNEKTFVSV 318


>gi|147828480|emb|CAN64316.1| hypothetical protein VITISV_027915 [Vitis vinifera]
          Length = 841

 Score =  325 bits (834), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 165/418 (39%), Positives = 260/418 (62%), Gaps = 4/418 (0%)

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
            A++  Y + G +E A ++F EM ERN VSW +M+ GY++   L  A+R+ D++P K++ 
Sbjct: 143 TALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVI 202

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD 387
           +  +MISGY +   M++A  +F ++   +   WN MI GY + G +D A + F  M   +
Sbjct: 203 SWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDSARSFFDAMPQXN 262

Query: 388 IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF--VL 445
            V+W TMI+GY++   +D A ++F+++G  ++ + +NA+I+ + QN    +ALK+F  +L
Sbjct: 263 NVSWMTMISGYSKCGDVDSACELFDQVGG-KDLLLFNAMIACYAQNSRPKEALKLFNNML 321

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
                 + D  TLA  +SAC+ L  L+ G  I     + G   D  +  +L+ +YAKCG 
Sbjct: 322 NPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGS 381

Query: 506 IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565
           I  A  LF      D++++ ++I G  ING A +AIKLF+EMV   + P+ +TFIG+L+A
Sbjct: 382 IDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNLITFIGLLTA 441

Query: 566 CSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAG 625
            +H GLV+ G + F  M + Y + P V+HY  M+DLL RAGRL EA E++K M ++P+AG
Sbjct: 442 YNHAGLVEEGYRCFTSMKK-YNLVPSVDHYGIMVDLLGRAGRLQEALELIKSMPMQPHAG 500

Query: 626 IWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVS 683
           +WG LL ACR+H N++ G IA +   ELEP  T   +LLSN++A   RWD+V+++R S
Sbjct: 501 VWGALLLACRLHNNVEFGEIAAQHCFELEPDTTGYXSLLSNIYASGERWDDVKRLRKS 558



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 154/607 (25%), Positives = 271/607 (44%), Gaps = 120/607 (19%)

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           ++++ +A Y+H+        +      PD FSWA  I   T+ G+    +E F L    +
Sbjct: 45  NYSATVAQYVHS--------VLHHSKSPDSFSWACAIRFSTQHGQF---KEAFALYVQMQ 93

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
               W    A             L  A+ +   +++   + G + +G++    KF  +  
Sbjct: 94  RWGLWPTTFA-------------LSSALKACARIAYR--MGGLSIHGQVQ---KFGFSGG 135

Query: 199 ERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQ 258
              +     ++D Y +L D++ A K F ++ E+NVVSW +ML+GY ++G ++ A+R+FD+
Sbjct: 136 GDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDE 195

Query: 259 MPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL 318
           +P ++V++WN+MI+ Y + G +E+A  LF +MPERN  SW  MI GYV    +D AR   
Sbjct: 196 IPQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDSARSFF 255

Query: 319 DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
           D MP  N  +   MISGY +   +D A ++FD++G  D++ +N MI  YAQ  R  EA+ 
Sbjct: 256 DAMPQXNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPKEALK 315

Query: 379 LFRQMVNKDI------VTWNTMIAG----------------------------------- 397
           LF  M+N D+      +T  ++I+                                    
Sbjct: 316 LFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDL 375

Query: 398 YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHST 457
           YA+   +D A ++F  + ++++ V++ A+I G   N   +DA+K+F  M       +  T
Sbjct: 376 YAKCGSIDKAYELFHGL-RKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNLIT 434

Query: 458 LACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD 517
               L+A  H   ++ G +      K   V  +     ++ +  + GR+Q          
Sbjct: 435 FIGLLTAYNHAGLVEEGYRCFTSMKKYNLVPSVDHYGIMVDLLGRAGRLQ---------- 484

Query: 518 PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS-HVGLVDGGL 576
                                EA++L + M M+   P    +  +L AC  H  +  G +
Sbjct: 485 ---------------------EALELIKSMPMQ---PHAGVWGALLLACRLHNNVEFGEI 520

Query: 577 KLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT------- 629
               C    + +EP    Y  ++  +  +G   E ++ VK ++  P   IW +       
Sbjct: 521 AAQHC----FELEPDTTGYXSLLSNIYASG---ERWDDVKRLRKSPKPEIWWSRIVQLWN 573

Query: 630 LLGACRM 636
           +LG C+M
Sbjct: 574 VLGICQM 580



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 185/365 (50%), Gaps = 52/365 (14%)

Query: 7   SIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDAR 66
           S G  G YV  +   +    K G +E A K+F +M+++N V++NSM++ Y K+G +  A+
Sbjct: 133 SGGGDGIYV--ETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQ 190

Query: 67  KLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEK 126
           ++F+++PQ++++SWNSMI+GY     +++A  LF +M   +  SW  MI+ Y   G+++ 
Sbjct: 191 RVFDEIPQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDIDS 250

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           AR  FD +P   + + W  M++GY+K G+ + A +L D +  K+++ +N+M++ Y +N  
Sbjct: 251 ARSFFDAMPQXNNVS-WMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSR 309

Query: 187 MHLASKFFEAMEERDV------------------------VSW----------------- 205
              A K F  M   DV                          W                 
Sbjct: 310 PKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLA 369

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP----I 261
             +LD Y +   +D A++ F  + ++++V++  M+ G   NG+ ++A +LFD+M      
Sbjct: 370 TALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIF 429

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS----WTTMIDGYVRIAKLDEARRL 317
            N++ +  ++ AY   G +EE  R F  M + N V     +  M+D   R  +L EA  L
Sbjct: 430 PNLITFIGLLTAYNHAGLVEEGYRCFTSMKKYNLVPSVDHYGIMVDLLGRAGRLQEALEL 489

Query: 318 LDQMP 322
           +  MP
Sbjct: 490 IKSMP 494


>gi|297810061|ref|XP_002872914.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297318751|gb|EFH49173.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1305

 Score =  325 bits (834), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 191/647 (29%), Positives = 340/647 (52%), Gaps = 34/647 (5%)

Query: 118  YTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSM 177
            Y R   L+ A ++FD +P ++D A WN +V    + GN+ +A KL   M      +++S 
Sbjct: 570  YGRCVSLDLANKIFDEMPKRDDLA-WNEIVMVNLQSGNWEKAVKLFRVMRFSGAKAYDST 628

Query: 178  L----------SGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQK 227
            +           G+ +  ++H          E +V   N ++  Y     L+S+ K F  
Sbjct: 629  MVKLLQVCSNKEGFAQGRQIH--GYVLRLGFESNVSMCNSLIVMYSRNGKLESSRKVFNS 686

Query: 228  IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI----RNVVAWNAMIAAY----VQRGQ 279
            + ++N+ SW +++S Y R G + +A  L D+M       ++V WN++++ Y    + R  
Sbjct: 687  MVDRNLSSWNSIVSSYTRLGYVDDAMGLLDEMETCGLKPDIVTWNSLLSGYASKALSRDA 746

Query: 280  IEEAARLFIEMPERNPVSWTTMID-----GYVRIAKLDEARRLLDQMPYKNIAAQTAMIS 334
            I    R+ I   + N  S ++++      G V++ K      + +Q+ Y ++  +T +I 
Sbjct: 747  IAVLKRIQIAGLKPNTSSISSLLQAVYEPGLVKLGKAIHGYVIRNQLWY-DVYVETTLID 805

Query: 335  GYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVT 390
             Y++   +  A  +FD +   ++V WN +I G +  G + EA  L  +M    +  + VT
Sbjct: 806  MYIKTGYLPYARMVFDMMDEKNIVAWNSLISGLSYTGLLKEAEALISRMEKEGIKSNAVT 865

Query: 391  WNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMT 447
            WN++++GYA   + + A+ +  +M   G   N VSW A++SG  +N    + LKIF+ M 
Sbjct: 866  WNSLVSGYATWGKTEKALAVVGKMKKNGVEPNVVSWTAILSGCSKNGNFGNGLKIFLKMQ 925

Query: 448  QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
            +EG   + +T++  L     L+ L  G+++H   +K+    D  V  +L+ MYAK G +Q
Sbjct: 926  EEGVSPNSATISSLLRILGCLSLLYSGKEVHSFCLKNNLTRDAHVATALVDMYAKSGDLQ 985

Query: 508  NAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
            +A  +F       + SWN +I GYA+     E I +F  M+  G+ PD +TF  VLS C 
Sbjct: 986  SAAEIFWGIKNKPLASWNCMIMGYAMFRRGEEGIAVFNAMLEAGIEPDAITFTSVLSVCK 1045

Query: 568  HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIW 627
            + GLV  G K F+ M   Y + P +EH +CM++LL R+G LDEA++ ++ M +KP+A IW
Sbjct: 1046 NSGLVREGWKYFDLMRSHYGVIPTIEHCSCMVELLGRSGYLDEAWDFIRTMPLKPDATIW 1105

Query: 628  GTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGS 687
            G  L +C++H++++L  IA ++L  LEP  ++ Y ++ N+++   RW +VE++R SM  +
Sbjct: 1106 GAFLSSCKIHRDLELAEIAWKRLQVLEPHNSANYMMMINLYSNLNRWGDVERIRNSMSNN 1165

Query: 688  GAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNT 734
              + Q   SWI++   +H F +         EI   L  L ++++ +
Sbjct: 1166 RVRVQDLWSWIQIDQTVHIFYAEGKAHPDEGEIYFELYKLVSEMKKS 1212



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 128/545 (23%), Positives = 240/545 (44%), Gaps = 108/545 (19%)

Query: 26   GKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIA 85
            G+   ++ A KIF +M +++ + +N ++    ++G    A KLF  M      +++S + 
Sbjct: 571  GRCVSLDLANKIFDEMPKRDDLAWNEIVMVNLQSGNWEKAVKLFRVMRFSGAKAYDSTMV 630

Query: 86   GYL----HNDKVKEARELFDKMFRPDLFSWALM----ITCYTRKGELEKARELFDLLPNK 137
              L    + +   + R++   + R    S   M    I  Y+R G+LE +R++F+ + ++
Sbjct: 631  KLLQVCSNKEGFAQGRQIHGYVLRLGFESNVSMCNSLIVMYSRNGKLESSRKVFNSMVDR 690

Query: 138  EDTACWNAMVAGYAKIGNYNEAKKLLDAMPS----KNIVSWNSMLSGYTKNG-------- 185
             + + WN++V+ Y ++G  ++A  LLD M +     +IV+WNS+LSGY            
Sbjct: 691  -NLSSWNSIVSSYTRLGYVDDAMGLLDEMETCGLKPDIVTWNSLLSGYASKALSRDAIAV 749

Query: 186  --EMHLA---------SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
               + +A         S   +A+ E  +V     + GYV  + L   W         +V 
Sbjct: 750  LKRIQIAGLKPNTSSISSLLQAVYEPGLVKLGKAIHGYVIRNQL---W--------YDVY 798

Query: 235  SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER- 293
               T++  Y + G +  AR +FD M  +N+VAWN++I+     G ++EA  L   M +  
Sbjct: 799  VETTLIDMYIKTGYLPYARMVFDMMDEKNIVAWNSLISGLSYTGLLKEAEALISRMEKEG 858

Query: 294  ---NPVSWTTMIDGYVRIAKLDEARRLLDQMPYK----NIAAQTAMISGYVQNKRMDEAN 346
               N V+W +++ GY    K ++A  ++ +M       N+ + TA++SG  +N       
Sbjct: 859  IKSNAVTWNSLVSGYATWGKTEKALAVVGKMKKNGVEPNVVSWTAILSGCSKNGNFGNGL 918

Query: 347  QIFDKIGTHDVV--------------CWNVMIKG-------------------------Y 367
            +IF K+    V               C +++  G                         Y
Sbjct: 919  KIFLKMQEEGVSPNSATISSLLRILGCLSLLYSGKEVHSFCLKNNLTRDAHVATALVDMY 978

Query: 368  AQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWN 424
            A+ G +  A  +F  + NK + +WN MI GYA  R+ ++ + +F  M   G   + +++ 
Sbjct: 979  AKSGDLQSAAEIFWGIKNKPLASWNCMIMGYAMFRRGEEGIAVFNAMLEAGIEPDAITFT 1038

Query: 425  ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
            +++S    +    +  K F LM        H  +   +  C+ +  L LGR        S
Sbjct: 1039 SVLSVCKNSGLVREGWKYFDLMRS------HYGVIPTIEHCSCMVEL-LGR--------S 1083

Query: 485  GYVND 489
            GY+++
Sbjct: 1084 GYLDE 1088



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 113/511 (22%), Positives = 218/511 (42%), Gaps = 89/511 (17%)

Query: 177 MLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY---------------------VEL 215
           +++ Y + GE   AS  F     R+ VSW   L+                       V  
Sbjct: 463 LITRYLEFGEFGYASAVFFLGFPRNQVSWRDFLEKAEDFGVEKYKVLEEFVRLQNKGVNF 522

Query: 216 DDLDSAWKF-------------------FQKIPEQNVVSWVTMLSG-YARNGRMLEARRL 255
           D++  A  F                    ++  + +    V+ L G Y R   +  A ++
Sbjct: 523 DEVVLAMVFRICAVLMYRFLGFTIHGGLIKRGLDNSDTRVVSALMGFYGRCVSLDLANKI 582

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR 315
           FD+MP R+ +AWN ++   +Q G  E+A +LF  M      ++ + +   +++    E  
Sbjct: 583 FDEMPKRDDLAWNEIVMVNLQSGNWEKAVKLFRVMRFSGAKAYDSTMVKLLQVCSNKEGF 642

Query: 316 RLLDQMP--------YKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367
               Q+           N++   ++I  Y +N +++ + ++F+ +   ++  WN ++  Y
Sbjct: 643 AQGRQIHGYVLRLGFESNVSMCNSLIVMYSRNGKLESSRKVFNSMVDRNLSSWNSIVSSY 702

Query: 368 AQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
            + G +D+A+ L  +M    +  DIVTWN++++GYA      DA+ + + +         
Sbjct: 703 TRLGYVDDAMGLLDEMETCGLKPDIVTWNSLLSGYASKALSRDAIAVLKRIQ-------- 754

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
              I+G                      K + S+++  L A      ++LG+ IH   I+
Sbjct: 755 ---IAGL---------------------KPNTSSISSLLQAVYEPGLVKLGKAIHGYVIR 790

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
           +    D++V  +LI MY K G +  A ++F   D  ++++WNSLI+G +  G   EA  L
Sbjct: 791 NQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDEKNIVAWNSLISGLSYTGLLKEAEAL 850

Query: 544 FEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLS 603
              M  EG+  + VT+  ++S  +  G  +  L +   M +   +EP V  +  ++   S
Sbjct: 851 ISRMEKEGIKSNAVTWNSLVSGYATWGKTEKALAVVGKMKK-NGVEPNVVSWTAILSGCS 909

Query: 604 RAGRLDEAFEMVKGMK---IKPNAGIWGTLL 631
           + G      ++   M+   + PN+    +LL
Sbjct: 910 KNGNFGNGLKIFLKMQEEGVSPNSATISSLL 940



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 181/401 (45%), Gaps = 46/401 (11%)

Query: 19   NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP----Q 74
            N  I    ++G++E + K+F+ M  +N  ++NS++S+Y + G V+DA  L ++M     +
Sbjct: 665  NSLIVMYSRNGKLESSRKVFNSMVDRNLSSWNSIVSSYTRLGYVDDAMGLLDEMETCGLK 724

Query: 75   RNLVSWNSMIAGY----LHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
             ++V+WNS+++GY    L  D +   + +     +P+  S + ++      G ++  + +
Sbjct: 725  PDIVTWNSLLSGYASKALSRDAIAVLKRIQIAGLKPNTSSISSLLQAVYEPGLVKLGKAI 784

Query: 131  FDLLPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187
               +   +   D      ++  Y K G    A+ + D M  KNIV+WNS++SG +  G +
Sbjct: 785  HGYVIRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDEKNIVAWNSLISGLSYTGLL 844

Query: 188  HLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTM 239
              A      ME+  +    V+WN ++ GY      + A     K+     E NVVSW  +
Sbjct: 845  KEAEALISRMEKEGIKSNAVTWNSLVSGYATWGKTEKALAVVGKMKKNGVEPNVVSWTAI 904

Query: 240  LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWT 299
            LSG ++NG      ++F +M    V   +A I++ +   +I     L     E +     
Sbjct: 905  LSGCSKNGNFGNGLKIFLKMQEEGVSPNSATISSLL---RILGCLSLLYSGKEVHSFCLK 961

Query: 300  TMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
              +     +A                    TA++  Y ++  +  A +IF  I    +  
Sbjct: 962  NNLTRDAHVA--------------------TALVDMYAKSGDLQSAAEIFWGIKNKPLAS 1001

Query: 360  WNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIA 396
            WN MI GYA   R +E I +F  M    +  D +T+ ++++
Sbjct: 1002 WNCMIMGYAMFRRGEEGIAVFNAMLEAGIEPDAITFTSVLS 1042



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 154/377 (40%), Gaps = 65/377 (17%)

Query: 15   VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
            V+ +   I    K+G +  A  +F  M +KN V +NS+IS  +  G + +A  L  +M +
Sbjct: 797  VYVETTLIDMYIKTGYLPYARMVFDMMDEKNIVAWNSLISGLSYTGLLKEAEALISRMEK 856

Query: 75   R----NLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEK 126
                 N V+WNS+++GY    K ++A  +  KM      P++ SW  +++  ++ G    
Sbjct: 857  EGIKSNAVTWNSLVSGYATWGKTEKALAVVGKMKKNGVEPNVVSWTAILSGCSKNGNFGN 916

Query: 127  ARELF------DLLPNK--------------------------------EDTACWNAMVA 148
              ++F       + PN                                  D     A+V 
Sbjct: 917  GLKIFLKMQEEGVSPNSATISSLLRILGCLSLLYSGKEVHSFCLKNNLTRDAHVATALVD 976

Query: 149  GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYT--KNGEMHLA--SKFFEAMEERDVVS 204
             YAK G+   A ++   + +K + SWN M+ GY   + GE  +A  +   EA  E D ++
Sbjct: 977  MYAKSGDLQSAAEIFWGIKNKPLASWNCMIMGYAMFRRGEEGIAVFNAMLEAGIEPDAIT 1036

Query: 205  WNLMLDGYVELDDLDSAWKFFQ-------KIPEQNVVSWVTMLSGYARNGRMLEARRLFD 257
            +  +L        +   WK+F         IP     S +  L G  R+G + EA     
Sbjct: 1037 FTSVLSVCKNSGLVREGWKYFDLMRSHYGVIPTIEHCSCMVELLG--RSGYLDEAWDFIR 1094

Query: 258  QMPIR-NVVAWNAMIAAYVQRGQIEEA----ARLFIEMPERNPVSWTTMIDGYVRIAKLD 312
             MP++ +   W A +++      +E A     RL +  P  N  ++  MI+ Y  + +  
Sbjct: 1095 TMPLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPH-NSANYMMMINLYSNLNRWG 1153

Query: 313  EARRLLDQMPYKNIAAQ 329
            +  R+ + M    +  Q
Sbjct: 1154 DVERIRNSMSNNRVRVQ 1170



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 9/244 (3%)

Query: 394 MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI---FVLMTQEG 450
           +I  Y +  +   A  +F  +G  RN VSW   +      +F ++  K+   FV +  +G
Sbjct: 463 LITRYLEFGEFGYASAVFF-LGFPRNQVSWRDFLEK--AEDFGVEKYKVLEEFVRLQNKG 519

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN-DLFVGNSLITMYAKCGRIQNA 509
              D   LA     CA L    LG  IH   IK G  N D  V ++L+  Y +C  +  A
Sbjct: 520 VNFDEVVLAMVFRICAVLMYRFLGFTIHGGLIKRGLDNSDTRVVSALMGFYGRCVSLDLA 579

Query: 510 ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
             +F +    D ++WN ++     +GN  +A+KLF  M   G      T + +L  CS+ 
Sbjct: 580 NKIFDEMPKRDDLAWNEIVMVNLQSGNWEKAVKLFRVMRFSGAKAYDSTMVKLLQVCSNK 639

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629
                G ++   +  +   E  V     +I + SR G+L+ + ++   M +  N   W +
Sbjct: 640 EGFAQGRQIHGYVLRL-GFESNVSMCNSLIVMYSRNGKLESSRKVFNSM-VDRNLSSWNS 697

Query: 630 LLGA 633
           ++ +
Sbjct: 698 IVSS 701


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 181/526 (34%), Positives = 290/526 (55%), Gaps = 41/526 (7%)

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRI 308
           ML A  L   +P    +  N +I  Y   G  ++A R F E+P ++ V W T+I G VR 
Sbjct: 125 MLHAACLRTMLPSAAPLVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRW 184

Query: 309 AKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG-- 366
             LDEARRLL Q P +N+ + T++I+GY +  R  +A   F+ + +  V    V + G  
Sbjct: 185 GLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGAL 244

Query: 367 -------------------------------------YAQCGRMDEAINLFRQM-VNKDI 388
                                                YA+CG + +A  +F  +   +  
Sbjct: 245 SACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKP 304

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
             WN +I GY ++  +D A  +F++MG R + +++N++I+G++ +    DAL++F+ M +
Sbjct: 305 EPWNAIIDGYCKLGHVDVARSLFDQMGAR-DVITFNSMITGYIHSGRLRDALQLFMQMRR 363

Query: 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
            G +AD+ T+   L+ACA L AL  GR +H    +     D+++G +L+ MY KCGR+  
Sbjct: 364 HGMRADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDE 423

Query: 509 AELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568
           A  +F      DV +W ++IAG A NG   +A++ F +M  +G  P  VT+I VL+ACSH
Sbjct: 424 ATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSH 483

Query: 569 VGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWG 628
             L+D G   F  M  ++ + P VEHY CMIDLL+R+G LDEA  +V+ M ++PNA IWG
Sbjct: 484 SSLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWG 543

Query: 629 TLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688
           ++L ACR+H+NI L R A E L +L P++ + Y  L N++ ++ +W + ++VR+ ME  G
Sbjct: 544 SILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWADAKRVRMLMEERG 603

Query: 689 AQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNT 734
            +K  G S I V  Q+H F++ D     T EI   ++ +A ++++ 
Sbjct: 604 VKKTAGYSSITVAGQVHKFVANDQSHPWTLEIMAMMEEIACRLKSV 649



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 115/495 (23%), Positives = 218/495 (44%), Gaps = 74/495 (14%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I      G  ++A + F ++  K+ V + ++I    + G +++AR+L  Q P+RN+V
Sbjct: 144 NPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVV 203

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFR----PDLFS------------------------ 110
           SW S+IAGY    +  +A   F+ M      PD  +                        
Sbjct: 204 SWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLV 263

Query: 111 -----------WALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEA 159
                         +I  Y + G++ +A+ +FD +   +    WNA++ GY K+G+ + A
Sbjct: 264 GQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVA 323

Query: 160 KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL----MLDGYVEL 215
           + L D M +++++++NSM++GY  +G +  A + F  M    + + N     +L     L
Sbjct: 324 RSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASL 383

Query: 216 DDLDSAWKFF----QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
             L           Q+I E++V     +L  Y + GR+ EA  +F +M  R+V  W AMI
Sbjct: 384 GALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMI 443

Query: 272 AAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
           A     G  ++A   F +M +R+    T++   Y+ +        LLD+           
Sbjct: 444 AGLAFNGMGKDALESFCQM-KRDGFQPTSVT--YIAVLTACSHSSLLDE----------- 489

Query: 332 MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVT 390
              G +    M   +++  ++       +  MI   A+ G +DEA++L + M +  + V 
Sbjct: 490 ---GRLHFNEMRSLHKLHPQVEH-----YGCMIDLLARSGLLDEAMHLVQTMPMQPNAVI 541

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGK--RRNTVSWNALISGFLQNEFHLDALKIFVLMTQ 448
           W ++++     + +D A    E + K        +  L + ++ +    DA ++ +LM +
Sbjct: 542 WGSILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWADAKRVRMLMEE 601

Query: 449 EG--KKADHSTLACA 461
            G  K A +S++  A
Sbjct: 602 RGVKKTAGYSSITVA 616



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 120/490 (24%), Positives = 193/490 (39%), Gaps = 148/490 (30%)

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDD 217
            A  L   +PS   +  N ++  Y   G    A + F+ +  +D V W  ++ G V    
Sbjct: 127 HAACLRTMLPSAAPLVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGL 186

Query: 218 LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFD-------------------- 257
           LD A +   + PE+NVVSW ++++GY+R GR  +A   F+                    
Sbjct: 187 LDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSA 246

Query: 258 ------------------QMPIR---NVVAWNAMIAAYVQRGQIEEAARLFIEMPE-RNP 295
                             Q  IR   N+V   A+I  Y + G I +A  +F  +   + P
Sbjct: 247 CSKLKNLDLGRLLHLLVGQKRIRMTDNLVV--ALIDMYAKCGDIAQAQAVFDAVGRGQKP 304

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
             W  +IDGY ++  +D AR L DQM  +++    +MI+GY+ + R+ +A Q+F ++  H
Sbjct: 305 EPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRH 364

Query: 356 ---------------------------------------DVVCWNVMIKGYAQCGRMDEA 376
                                                  DV     ++  Y +CGR+DEA
Sbjct: 365 GMRADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEA 424

Query: 377 INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
             +F +M  +D+ TW  MIAG A           F  MGK                    
Sbjct: 425 TAVFHRMGERDVHTWTAMIAGLA-----------FNGMGK-------------------- 453

Query: 437 LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSL 496
            DAL+ F  M ++G +    T    L+AC+H + L  GR          + N++    SL
Sbjct: 454 -DALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRL---------HFNEM---RSL 500

Query: 497 ITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
             ++ +                  V  +  +I   A +G   EA+ L + M M+   P+ 
Sbjct: 501 HKLHPQ------------------VEHYGCMIDLLARSGLLDEAMHLVQTMPMQ---PNA 539

Query: 557 VTFIGVLSAC 566
           V +  +LSAC
Sbjct: 540 VIWGSILSAC 549


>gi|356576967|ref|XP_003556601.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35030, mitochondrial-like [Glycine max]
          Length = 453

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 159/401 (39%), Positives = 252/401 (62%), Gaps = 7/401 (1%)

Query: 317 LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEA 376
           L DQ+  +++ + T M++G ++N R+++A  +FD++   +VV WN MI G+AQ  R+ EA
Sbjct: 39  LTDQV--EDVVSWTTMVAGLLKNGRVEDARALFDRMPVRNVVSWNAMIMGHAQNRRLHEA 96

Query: 377 INLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFH 436
           + LF+ M  +D+ +WNTMI G+ Q  +++ A K+F EM + +N ++W A++ G++Q+   
Sbjct: 97  LELFQGMPERDMHSWNTMITGFIQNGKLNYAEKLFGEM-REKNAITWTAMMMGYVQHGLS 155

Query: 437 LDALKIF-VLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS 495
            +ALK+F  ++  +G K +  T    L AC+ LA L  G+QIH +  K+ + +    G +
Sbjct: 156 EEALKVFNKMLANDGLKPNTGTFVTVLRACSDLAGLTEGQQIHQMISKTVFQDSXICG-T 214

Query: 496 LITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA 553
           LI MY KCG +  A+ +F D      D+ISWN +IAGYA +G   EAI LF EM   GV 
Sbjct: 215 LINMYPKCGELHTAKXMFDDGLLSQRDLISWNGMIAGYAHHGYGKEAINLFNEMQELGVC 274

Query: 554 PDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFE 613
            + VTF+G+L ACSH G+V+ GLK F+ + +  +I    +HYAC++DL  R GRL EAF 
Sbjct: 275 ANDVTFVGLLRACSHTGVVEEGLKYFDEILKNRSIXLREDHYACLVDLCDRTGRLKEAFN 334

Query: 614 MVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGR 673
           +++G+  +    +WG LL  C +H N+ +G++  +K+ ++EPQ    ++LLSNM+A  G+
Sbjct: 335 IIEGLGKESPLTVWGVLLARCNVHGNVDIGKLVAKKILKIEPQNAGTHSLLSNMYASVGK 394

Query: 674 WDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQ 714
           W E   +R+ M   G +KQPG SWIEV N +  F+  D  +
Sbjct: 395 WKEAANIRMKMNDKGLKKQPGYSWIEVGNTVQVFVVDDKSR 435



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 104/323 (32%), Positives = 181/323 (56%), Gaps = 23/323 (7%)

Query: 231 QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
           ++VVSW TM++G  +NGR+ +AR LFD+MP+RNVV+WNAMI  + Q  ++ EA  LF  M
Sbjct: 44  EDVVSWTTMVAGLLKNGRVEDARALFDRMPVRNVVSWNAMIMGHAQNRRLHEALELFQGM 103

Query: 291 PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD 350
           PER+  SW TMI G+++  KL+ A +L  +M  KN    TAM+ GYVQ+   +EA ++F+
Sbjct: 104 PERDMHSWNTMITGFIQNGKLNYAEKLFGEMREKNAITWTAMMMGYVQHGLSEEALKVFN 163

Query: 351 KIGTHDVVCWN-----VMIKGYAQCGRMDEAINLFRQMVNK----DIVTWNTMIAGYAQI 401
           K+  +D +  N      +++  +    + E   +  QM++K    D     T+I  Y + 
Sbjct: 164 KMLANDGLKPNTGTFVTVLRACSDLAGLTEGQQI-HQMISKTVFQDSXICGTLINMYPKC 222

Query: 402 RQMDDAVKIFEE-MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460
            ++  A  +F++ +  +R+ +SWN +I+G+  + +  +A+ +F  M + G  A+  T   
Sbjct: 223 GELHTAKXMFDDGLLSQRDLISWNGMIAGYAHHGYGKEAINLFNEMQELGVCANDVTFVG 282

Query: 461 ALSACAHLAALQLGRQIHHLAIKSGYV---NDLFVGNSLITMYAKCGRIQNA----ELLF 513
            L AC+H   ++ G +     +K+  +    D +    L+ +  + GR++ A    E L 
Sbjct: 283 LLRACSHTGVVEEGLKYFDEILKNRSIXLREDHYA--CLVDLCDRTGRLKEAFNIIEGLG 340

Query: 514 KDADPVDVISWNSLIAGYAINGN 536
           K++ P+ V  W  L+A   ++GN
Sbjct: 341 KES-PLTV--WGVLLARCNVHGN 360



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 151/299 (50%), Gaps = 37/299 (12%)

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           F L    ED   W  MVAG  K G   +A+ L D MP +N+VSWN+M+ G+ +N  +H A
Sbjct: 37  FSLTDQVEDVVSWTTMVAGLLKNGRVEDARALFDRMPVRNVVSWNAMIMGHAQNRRLHEA 96

Query: 191 SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRML 250
            + F+ M ERD+ SWN M+ G+++   L+ A K F ++ E+N ++W  M+ GY ++G   
Sbjct: 97  LELFQGMPERDMHSWNTMITGFIQNGKLNYAEKLFGEMREKNAITWTAMMMGYVQHGLSE 156

Query: 251 EARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAK 310
           EA ++F++M                          L  +  + N  ++ T++     +A 
Sbjct: 157 EALKVFNKM--------------------------LANDGLKPNTGTFVTVLRACSDLAG 190

Query: 311 LDEARRLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFDK--IGTHDVVCWNVMI 364
           L E ++ + QM  K +   +     +I+ Y +   +  A  +FD   +   D++ WN MI
Sbjct: 191 LTEGQQ-IHQMISKTVFQDSXICGTLINMYPKCGELHTAKXMFDDGLLSQRDLISWNGMI 249

Query: 365 KGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRN 419
            GYA  G   EAINLF +M    V  + VT+  ++   +    +++ +K F+E+ K R+
Sbjct: 250 AGYAHHGYGKEAINLFNEMQELGVCANDVTFVGLLRACSHTGVVEEGLKYFDEILKNRS 308



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/408 (27%), Positives = 202/408 (49%), Gaps = 50/408 (12%)

Query: 38  FSQMSQ-KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           FS   Q ++ V++ +M++   KNGRV DAR LF++MP RN+VSWN+MI G+  N ++ EA
Sbjct: 37  FSLTDQVEDVVSWTTMVAGLLKNGRVEDARALFDRMPVRNVVSWNAMIMGHAQNRRLHEA 96

Query: 97  RELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNY 156
            ELF  M   D+ SW  MIT + + G+L  A +LF  +  K +   W AM+ GY + G  
Sbjct: 97  LELFQGMPERDMHSWNTMITGFIQNGKLNYAEKLFGEMREK-NAITWTAMMMGYVQHGLS 155

Query: 157 NEAKKLLDAMPSKNIVSWN-----------SMLSGYTKNGEMH--LASKFFEAMEERDVV 203
            EA K+ + M + + +  N           S L+G T+  ++H  ++   F+     D  
Sbjct: 156 EEALKVFNKMLANDGLKPNTGTFVTVLRACSDLAGLTEGQQIHQMISKTVFQ-----DSX 210

Query: 204 SWNLMLDGYVELDDLDSAWKFFQK--IPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP- 260
               +++ Y +  +L +A   F    + +++++SW  M++GYA +G   EA  LF++M  
Sbjct: 211 ICGTLINMYPKCGELHTAKXMFDDGLLSQRDLISWNGMIAGYAHHGYGKEAINLFNEMQE 270

Query: 261 ---IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV-----SWTTMIDGYVRIAKLD 312
                N V +  ++ A    G +EE  + F E+ +   +      +  ++D   R  +L 
Sbjct: 271 LGVCANDVTFVGLLRACSHTGVVEEGLKYFDEILKNRSIXLREDHYACLVDLCDRTGRLK 330

Query: 313 EARRLLDQMPYKN-IAAQTAMISGYVQNKRMDEANQIFDKI--------GTHDVVCWNVM 363
           EA  +++ +  ++ +     +++    +  +D    +  KI        GTH     +++
Sbjct: 331 EAFNIIEGLGKESPLTVWGVLLARCNVHGNVDIGKLVAKKILKIEPQNAGTH-----SLL 385

Query: 364 IKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIF 411
              YA  G+  EA N+  +M +K +        GY+ I ++ + V++F
Sbjct: 386 SNMYASVGKWKEAANIRMKMNDKGLKKQ----PGYSWI-EVGNTVQVF 428



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 184/352 (52%), Gaps = 28/352 (7%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           +  L K+GRVE+A  +F +M  +N V++N+MI  +A+N R+++A +LF+ MP+R++ SWN
Sbjct: 53  VAGLLKNGRVEDARALFDRMPVRNVVSWNAMIMGHAQNRRLHEALELFQGMPERDMHSWN 112

Query: 82  SMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD-LLPN---K 137
           +MI G++ N K+  A +LF +M   +  +W  M+  Y + G  E+A ++F+ +L N   K
Sbjct: 113 TMITGFIQNGKLNYAEKLFGEMREKNAITWTAMMMGYVQHGLSEEALKVFNKMLANDGLK 172

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS----WNSMLSGYTKNGEMHLASKF 193
            +T  +  ++   + +    E ++ +  M SK +        ++++ Y K GE+H A   
Sbjct: 173 PNTGTFVTVLRACSDLAGLTEGQQ-IHQMISKTVFQDSXICGTLINMYPKCGELHTAKXM 231

Query: 194 FE--AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNG 247
           F+   + +RD++SWN M+ GY        A   F ++ E  V    V++V +L   +  G
Sbjct: 232 FDDGLLSQRDLISWNGMIAGYAHHGYGKEAINLFNEMQELGVCANDVTFVGLLRACSHTG 291

Query: 248 RMLEARRLFDQ-MPIRNVVAWNAMIAAYV----QRGQIEEAARLFIEMPERNPVS-WTTM 301
            + E  + FD+ +  R++       A  V    + G+++EA  +   + + +P++ W  +
Sbjct: 292 VVEEGLKYFDEILKNRSIXLREDHYACLVDLCDRTGRLKEAFNIIEGLGKESPLTVWGVL 351

Query: 302 -----IDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQI 348
                + G V I KL  A+++L   P +N    + + + Y    +  EA  I
Sbjct: 352 LARCNVHGNVDIGKL-VAKKILKIEP-QNAGTHSLLSNMYASVGKWKEAANI 401



 Score =  107 bits (267), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/337 (21%), Positives = 166/337 (49%), Gaps = 22/337 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  I    ++ R+ EA+++F  M +++  ++N+MI+ + +NG++N A KLF +M +
Sbjct: 77  VVSWNAMIMGHAQNRRLHEALELFQGMPERDMHSWNTMITGFIQNGKLNYAEKLFGEMRE 136

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARE 129
           +N ++W +M+ GY+ +   +EA ++F+KM      +P+  ++  ++   +    L + ++
Sbjct: 137 KNAITWTAMMMGYVQHGLSEEALKVFNKMLANDGLKPNTGTFVTVLRACSDLAGLTEGQQ 196

Query: 130 LFDLLPNK--EDTACWNAMVAGYAKIGNYNEAKKLLD--AMPSKNIVSWNSMLSGYTKNG 185
           +  ++     +D+     ++  Y K G  + AK + D   +  ++++SWN M++GY  +G
Sbjct: 197 IHQMISKTVFQDSXICGTLINMYPKCGELHTAKXMFDDGLLSQRDLISWNGMIAGYAHHG 256

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYV----ELDDLDSAWKFFQKIPEQNVV-----SW 236
               A   F  M+E  V + ++   G +        ++   K+F +I +   +      +
Sbjct: 257 YGKEAINLFNEMQELGVCANDVTFVGLLRACSHTGVVEEGLKYFDEILKNRSIXLREDHY 316

Query: 237 VTMLSGYARNGRMLEARRLFDQMPIRN-VVAWNAMIAAYVQRGQIEEA---ARLFIEMPE 292
             ++    R GR+ EA  + + +   + +  W  ++A     G ++     A+  +++  
Sbjct: 317 ACLVDLCDRTGRLKEAFNIIEGLGKESPLTVWGVLLARCNVHGNVDIGKLVAKKILKIEP 376

Query: 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
           +N  + + + + Y  + K  EA  +  +M  K +  Q
Sbjct: 377 QNAGTHSLLSNMYASVGKWKEAANIRMKMNDKGLKKQ 413


>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 194/547 (35%), Positives = 291/547 (53%), Gaps = 37/547 (6%)

Query: 218 LDSAWKFFQKIPEQNVVSWVTMLSGYARNG--RMLEARRLFDQMPIRNVVAWN------- 268
           L SA   F  +P  NV  + +++  +A N   R L     F QM    +   N       
Sbjct: 69  LASAVNVFNHVPHPNVHLYNSIIRAHAHNSSHRSLPFNAFF-QMQKNGLFPDNFTYPFLL 127

Query: 269 ------------AMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRI--AKLDEA 314
                        MI A+V++  I     +F+           ++ID Y R   A LD A
Sbjct: 128 KACSGPSSLPLVRMIHAHVEK--IGFYGDIFVP---------NSLIDSYSRCGNAGLDGA 176

Query: 315 RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMD 374
             L   M  +++    +MI G V+   +  A ++FD++   D+V WN M+ GYA+ G MD
Sbjct: 177 MSLFLAMEERDVVTWNSMIGGLVRCGELQGACKLFDEMPDRDMVSWNTMLDGYAKAGEMD 236

Query: 375 EAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
            A  LF +M  ++IV+W+TM+ GY++   MD A  +F+     +N V W  +I+G+ +  
Sbjct: 237 TAFELFERMPWRNIVSWSTMVCGYSKGGDMDMARMLFDRC-PVKNVVLWTTIIAGYAEKG 295

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN 494
              +A +++  M + G + D   L   L+ACA    L LG++IH    +  +     V N
Sbjct: 296 LAREATELYGKMEEAGMRPDDGFLLSILAACAESGMLGLGKRIHASMRRWRFRCGAKVLN 355

Query: 495 SLITMYAKCGRIQNAELLFKDA-DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA 553
           + I MYAKCG +  A  +F       DV+SWNS+I G+A++G+  +A++LF  MV EG  
Sbjct: 356 AFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSWMVQEGFE 415

Query: 554 PDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFE 613
           PD  TF+G+L AC+H GLV+ G K F  M +VY I P VEHY CM+DLL R G L EAF 
Sbjct: 416 PDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFM 475

Query: 614 MVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGR 673
           +++ M ++PNA I GTLL ACRMH ++ L R   E+L +LEP     Y+LLSN++A+AG 
Sbjct: 476 LLRSMPMEPNAIILGTLLNACRMHNDVDLARAVCEQLFKLEPSDPGNYSLLSNIYAQAGD 535

Query: 674 WDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           W  V  VR+ M+ +G +K  G S IEV+ ++H F   D    ++ +I   +  L   +R 
Sbjct: 536 WMNVANVRLQMKNTGGEKPSGASSIEVEEEVHEFTVFDQSHPKSDDIYQMIDRLVQDLRQ 595

Query: 734 TPLAVII 740
                +I
Sbjct: 596 VGYVPMI 602



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 142/538 (26%), Positives = 237/538 (44%), Gaps = 89/538 (16%)

Query: 20  KKITQLGKSGRVEEAIKIFSQMSQKNT----VTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           +K+  L K   ++   +I +Q+ + N          +I+A++    +  A  +F  +P  
Sbjct: 23  EKLCDLHKCTNLDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHP 82

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFR-------PDLFSWALMITCYTRKGELEKAR 128
           N+  +NS+I  + HN   +     F+  F+       PD F++  ++   +    L   R
Sbjct: 83  NVHLYNSIIRAHAHNSSHRSLP--FNAFFQMQKNGLFPDNFTYPFLLKACSGPSSLPLVR 140

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
            +                 A   KIG Y +            I   NS++  Y++ G   
Sbjct: 141 MIH----------------AHVEKIGFYGD------------IFVPNSLIDSYSRCGNAG 172

Query: 189 L--ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARN 246
           L  A   F AMEERDVV+WN M+ G V   +L  A K F ++P++++VSW TML GYA+ 
Sbjct: 173 LDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQGACKLFDEMPDRDMVSWNTMLDGYAKA 232

Query: 247 GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYV 306
           G M  A  LF++MP RN+V+W+ M+  Y + G ++ A  LF   P +N V WTT+I GY 
Sbjct: 233 GEMDTAFELFERMPWRNIVSWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYA 292

Query: 307 RIAKLDEARRLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFDKIGTHDVVC--- 359
                 EA  L  +M    +        ++++   ++  +    +I   +      C   
Sbjct: 293 EKGLAREATELYGKMEEAGMRPDDGFLLSILAACAESGMLGLGKRIHASMRRWRFRCGAK 352

Query: 360 -WNVMIKGYAQCGRMDEAINLFR-QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417
             N  I  YA+CG +D A ++F   M  KD+V+WN+MI G+A     + A+++F      
Sbjct: 353 VLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELF------ 406

Query: 418 RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQI 477
               SW                      M QEG + D  T    L AC H   +  GR+ 
Sbjct: 407 ----SW----------------------MVQEGFEPDTYTFVGLLCACTHAGLVNEGRKY 440

Query: 478 HHLAIK-SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
            +   K  G V  +     ++ +  + G ++ A +L +   P++    N++I G  +N
Sbjct: 441 FYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFMLLRSM-PMEP---NAIILGTLLN 494



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 155/325 (47%), Gaps = 18/325 (5%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V   N  I  L + G ++ A K+F +M  ++ V++N+M+  YAK G ++ A +LFE+MP 
Sbjct: 188 VVTWNSMIGGLVRCGELQGACKLFDEMPDRDMVSWNTMLDGYAKAGEMDTAFELFERMPW 247

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           RN+VSW++M+ GY     +  AR LFD+    ++  W  +I  Y  KG   +A EL+  +
Sbjct: 248 RNIVSWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYAEKGLAREATELYGKM 307

Query: 135 PN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS----WNSMLSGYTKNGEM 187
                + D     +++A  A+ G     K++  +M            N+ +  Y K G +
Sbjct: 308 EEAGMRPDDGFLLSILAACAESGMLGLGKRIHASMRRWRFRCGAKVLNAFIDMYAKCGCL 367

Query: 188 HLASKFFEA-MEERDVVSWNLMLDGYVELDDLDSAWKFF----QKIPEQNVVSWVTMLSG 242
             A   F   M ++DVVSWN M+ G+      + A + F    Q+  E +  ++V +L  
Sbjct: 368 DAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSWMVQEGFEPDTYTFVGLLCA 427

Query: 243 YARNGRMLEARRLFDQMP-----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-ERNPV 296
               G + E R+ F  M      +  V  +  M+    + G ++EA  L   MP E N +
Sbjct: 428 CTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFMLLRSMPMEPNAI 487

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQM 321
              T+++       +D AR + +Q+
Sbjct: 488 ILGTLLNACRMHNDVDLARAVCEQL 512



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 132/293 (45%), Gaps = 21/293 (7%)

Query: 369 QCGRMDEAINLFRQMV----NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWN 424
           +C  +D    +  Q++    ++D+     +IA ++  R +  AV +F  +    N   +N
Sbjct: 30  KCTNLDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHV-PHPNVHLYN 88

Query: 425 ALISGFLQNEFHLD-ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
           ++I     N  H       F  M + G   D+ T    L AC+  ++L L R IH    K
Sbjct: 89  SIIRAHAHNSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIHAHVEK 148

Query: 484 SGYVNDLFVGNSLITMYAKCGR--IQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541
            G+  D+FV NSLI  Y++CG   +  A  LF   +  DV++WNS+I G    G    A 
Sbjct: 149 IGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQGAC 208

Query: 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601
           KLF+EM       D V++  +L   +  G +D   +LFE M     +      ++ M+  
Sbjct: 209 KLFDEMPDR----DMVSWNTMLDGYAKAGEMDTAFELFERMPWRNIVS-----WSTMVCG 259

Query: 602 LSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE 654
            S+ G +D A  +     +K N  +W T++     +    L R A E   ++E
Sbjct: 260 YSKGGDMDMARMLFDRCPVK-NVVLWTTIIAG---YAEKGLAREATELYGKME 308


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 182/490 (37%), Positives = 282/490 (57%), Gaps = 15/490 (3%)

Query: 254 RLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIA 309
           R+FD +   NV  WN MI   ++  +  +A  L+ EM       N  ++  ++       
Sbjct: 92  RVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAG 151

Query: 310 KLDEARRLLDQMPYKNIAAQTAMISG----YVQNKRMDEANQIFD-KIGTHDVVCWNVMI 364
            + E  ++   +    +     ++S     Y    R+ EA +I D K G  D VCWN MI
Sbjct: 152 VVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMI 211

Query: 365 KGYAQCGRMDEAINLFRQMVNKDIV-TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
            GY + G ++ A  LF  M ++ ++ TWN MI+G+++   ++ A + F+EM K R+ +SW
Sbjct: 212 DGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEM-KERDEISW 270

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
           +A+I G++Q    ++AL+IF  M +E  +     L   LSACA+L AL  GR IH  A +
Sbjct: 271 SAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKR 330

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKL 543
           +    D  +G SL+ MYAKCGRI  A  +F+     +V SWN++I G A++G A +AI L
Sbjct: 331 NSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDL 390

Query: 544 FEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLS 603
           F +M    + P+ +TF+GVL+AC+H GLV  GL +F  M + Y +EP +EHY C++DLL 
Sbjct: 391 FSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLG 447

Query: 604 RAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYAL 663
           RAG L EA ++V  +  +P   +WG LLGACR H N++LG    + L ELEPQ +  Y L
Sbjct: 448 RAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTL 507

Query: 664 LSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEV-KNQIHTFLSGDPKQCRTAEICN 722
           LSN++A+AGRW+EV +VR  M+  G +  PG S I++ + ++H F+ GD    +  +I  
Sbjct: 508 LSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQ 567

Query: 723 TLKTLAAQIR 732
            L  +  +++
Sbjct: 568 MLDKVKERLQ 577



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 178/402 (44%), Gaps = 54/402 (13%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVS----WNSMIAGYLHNDKVKEARE 98
           + N  TY +++ A +  G V +  ++   + +  L       +S I  Y    ++ EAR 
Sbjct: 134 RPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARR 193

Query: 99  LFD-KMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYN 157
           + D K    D   W  MI  Y R GE+E ARELF+ +P++   + WNAM++G+++ G   
Sbjct: 194 ILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVE 253

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----------------- 200
            A++  D M  ++ +SW++M+ GY + G    A + F  M++                  
Sbjct: 254 VAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACA 313

Query: 201 -----DVVSW--------NLMLDG---------YVELDDLDSAWKFFQKIPEQNVVSWVT 238
                D   W        ++ LDG         Y +   +D AW+ F+K+  + V SW  
Sbjct: 314 NLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNA 373

Query: 239 MLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
           M+ G A +GR  +A  LF +M I  N + +  ++ A    G +++   +F  M +   V 
Sbjct: 374 MIGGLAMHGRAEDAIDLFSKMDINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVE 433

Query: 298 -----WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ---NKRMDE-ANQI 348
                +  ++D   R   L EA +++  +P +   A    + G  +   N  + E   +I
Sbjct: 434 PQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKI 493

Query: 349 FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
             ++   +   + ++   YA+ GR +E   + + M  + I T
Sbjct: 494 LLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKT 535



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 172/386 (44%), Gaps = 60/386 (15%)

Query: 99  LFDKMFRPDLFSWALMITCYTRKGELEKARELF------DLLPNKED-----TACWNAMV 147
           +FD + +P++F W  MI       E  KA  L+         PNK        AC +A V
Sbjct: 93  VFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGV 152

Query: 148 AG---------------------------YAKIGNYNEAKKLLDAMPSK-NIVSWNSMLS 179
                                        YA  G   EA+++LD    + + V WN+M+ 
Sbjct: 153 VAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMID 212

Query: 180 GYTKNGEMHLASKFFEAMEERDVVS-WNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT 238
           GY + GE+  A + FE M +R ++S WN M+ G+     ++ A +FF ++ E++ +SW  
Sbjct: 213 GYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSA 272

Query: 239 MLSGYARNGRMLEARRLFDQM------PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE 292
           M+ GY + G  +EA  +F QM      P + V+   ++++A    G +++  R      +
Sbjct: 273 MIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLP--SVLSACANLGALDQ-GRWIHTYAK 329

Query: 293 RNPVSW-----TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347
           RN +       T+++D Y +  ++D A  + ++M  K +++  AMI G   + R ++A  
Sbjct: 330 RNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAID 389

Query: 348 IFDKIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQM-----VNKDIVTWNTMIAGYAQI 401
           +F K+  + + + +  ++   A  G + + + +F  M     V   I  +  ++    + 
Sbjct: 390 LFSKMDINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRA 449

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALI 427
             + +A K+   +        W AL+
Sbjct: 450 GLLTEAEKVVSSIPTEPTPAVWGALL 475



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 86/185 (46%), Gaps = 9/185 (4%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP-QRNLVSWNSMIA 85
           K GR++ A ++F +MS K   ++N+MI   A +GR  DA  LF +M    N +++  ++ 
Sbjct: 349 KCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDINPNEITFVGVLN 408

Query: 86  GYLHNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELEKARELFDLLPNKEDT 140
              H   V++   +F+ M +     P +  +  ++    R G L +A ++   +P +   
Sbjct: 409 ACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTP 468

Query: 141 ACWNAMVAGYAKIGNY---NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
           A W A++    K GN        K+L  +  +N   +  + + Y K G      +  + M
Sbjct: 469 AVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLM 528

Query: 198 EERDV 202
           +ER +
Sbjct: 529 KERGI 533



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 85/190 (44%), Gaps = 14/190 (7%)

Query: 455 HSTLACALS--ACAHLAALQLGRQIHHL------AIKSGYVNDLFVGNSLITMYAKCG-- 504
           HST    LS  A  HL   Q    +HHL       +++G++ D ++  SL+  YA     
Sbjct: 23  HSTETSKLSHKAILHLLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTN 82

Query: 505 ---RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIG 561
                +++  +F      +V  WN +I     N    +AI L+ EM++    P+  T+  
Sbjct: 83  RYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPA 142

Query: 562 VLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIK 621
           VL ACS  G+V  G+++   + + + +       +  I + +  GRL EA  ++     +
Sbjct: 143 VLKACSDAGVVAEGVQVHAHLVK-HGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGE 201

Query: 622 PNAGIWGTLL 631
            +A  W  ++
Sbjct: 202 VDAVCWNAMI 211


>gi|449459744|ref|XP_004147606.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Cucumis sativus]
 gi|449529850|ref|XP_004171911.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Cucumis sativus]
          Length = 580

 Score =  325 bits (833), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 168/441 (38%), Positives = 265/441 (60%), Gaps = 4/441 (0%)

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           R V    A++  Y + G +  A ++F EM E+N VSW +++ GYV+I  L +A++L D+M
Sbjct: 137 RCVYVQTALVDFYSKLGDMGFAQKVFDEMTEKNVVSWNSILSGYVKIGNLVDAQKLFDEM 196

Query: 322 PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
           P K+  +  +M++G+  +  MD A  +F ++G      WN MI GY  CG M  A NLF 
Sbjct: 197 PVKDAISWNSMLTGFSNSGNMDRACCLFQQMGEKSSASWNAMIGGYVNCGDMKAARNLFD 256

Query: 382 QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK-RRNTVSWNALISGFLQNEFHLDAL 440
            M N++ VT  T+IAGY+++ +++ A ++F++M +  +  +S+NA+I+ + QN     AL
Sbjct: 257 VMPNRNNVTRITLIAGYSKLGEVNSAYELFDKMEESEKELLSFNAMIACYSQNSMPNKAL 316

Query: 441 KIFVLMTQE--GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
           ++F LM Q     + D  T A  +SAC  L  L  G  I     K G   D  +  +L+ 
Sbjct: 317 ELFNLMLQPHVNIQPDEMTFASVISACTQLGNLSYGTWIESYMEKLGIELDDHLATALVD 376

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           +YAK G I  A  LF      D+++++++I G  IN  A EAI+LF+EM+   + P+ VT
Sbjct: 377 LYAKSGNINRAFELFNGLKKRDLVAYSAMIFGCGINSKAHEAIRLFKEMLRVNICPNLVT 436

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
           + G+L+A +H GLVD G   F  M + + + PL +HY  M+DLL RAGRL+EA+E++  M
Sbjct: 437 YAGLLTAYNHAGLVDEGYLCFSSMKD-HGLAPLADHYGIMVDLLGRAGRLEEAYELIHSM 495

Query: 619 KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVE 678
            ++PNAG+WG LL AC++H N++LG IA    S+L    T   +LL+N+++   RWD+ +
Sbjct: 496 PVQPNAGVWGALLHACKLHNNVELGEIAARNCSKLVTDTTGYRSLLANIYSSMERWDDAK 555

Query: 679 KVRVSMEGSGAQKQPGCSWIE 699
           ++R +M      K  GCSW+E
Sbjct: 556 RMRKAMGNKIFAKISGCSWME 576



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 172/317 (54%), Gaps = 17/317 (5%)

Query: 114 MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS 173
           ++  Y++ G++  A+++FD +  K +   WN++++GY KIGN  +A+KL D MP K+ +S
Sbjct: 145 LVDFYSKLGDMGFAQKVFDEMTEK-NVVSWNSILSGYVKIGNLVDAQKLFDEMPVKDAIS 203

Query: 174 WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV 233
           WNSML+G++ +G M  A   F+ M E+   SWN M+ GYV   D+ +A   F  +P +N 
Sbjct: 204 WNSMLTGFSNSGNMDRACCLFQQMGEKSSASWNAMIGGYVNCGDMKAARNLFDVMPNRNN 263

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQM--PIRNVVAWNAMIAAYVQRGQIEEAARLFIEM- 290
           V+ +T+++GY++ G +  A  LFD+M    + ++++NAMIA Y Q     +A  LF  M 
Sbjct: 264 VTRITLIAGYSKLGEVNSAYELFDKMEESEKELLSFNAMIACYSQNSMPNKALELFNLML 323

Query: 291 -PERN----PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMISGYVQNKR 341
            P  N     +++ ++I    ++  L     +   M    I       TA++  Y ++  
Sbjct: 324 QPHVNIQPDEMTFASVISACTQLGNLSYGTWIESYMEKLGIELDDHLATALVDLYAKSGN 383

Query: 342 MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI----VTWNTMIAG 397
           ++ A ++F+ +   D+V ++ MI G     +  EAI LF++M+  +I    VT+  ++  
Sbjct: 384 INRAFELFNGLKKRDLVAYSAMIFGCGINSKAHEAIRLFKEMLRVNICPNLVTYAGLLTA 443

Query: 398 YAQIRQMDDAVKIFEEM 414
           Y     +D+    F  M
Sbjct: 444 YNHAGLVDEGYLCFSSM 460



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 183/359 (50%), Gaps = 52/359 (14%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V+ Q   +    K G +  A K+F +M++KN V++NS++S Y K G + DA+KLF++MP 
Sbjct: 139 VYVQTALVDFYSKLGDMGFAQKVFDEMTEKNVVSWNSILSGYVKIGNLVDAQKLFDEMPV 198

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           ++ +SWNSM+ G+ ++  +  A  LF +M      SW  MI  Y   G+++ AR LFD++
Sbjct: 199 KDAISWNSMLTGFSNSGNMDRACCLFQQMGEKSSASWNAMIGGYVNCGDMKAARNLFDVM 258

Query: 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM--PSKNIVSWNSMLSGYTKNGEMHLASK 192
           PN+ +      ++AGY+K+G  N A +L D M    K ++S+N+M++ Y++N   + A +
Sbjct: 259 PNRNNVT-RITLIAGYSKLGEVNSAYELFDKMEESEKELLSFNAMIACYSQNSMPNKALE 317

Query: 193 FFEAMEERDV---------------------VSWNLMLDGY-----VELDD--------- 217
            F  M +  V                     +S+   ++ Y     +ELDD         
Sbjct: 318 LFNLMLQPHVNIQPDEMTFASVISACTQLGNLSYGTWIESYMEKLGIELDDHLATALVDL 377

Query: 218 ------LDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM----PIRNVVAW 267
                 ++ A++ F  + ++++V++  M+ G   N +  EA RLF +M       N+V +
Sbjct: 378 YAKSGNINRAFELFNGLKKRDLVAYSAMIFGCGINSKAHEAIRLFKEMLRVNICPNLVTY 437

Query: 268 NAMIAAYVQRGQIEEAARLFIEMPERN--PVS--WTTMIDGYVRIAKLDEARRLLDQMP 322
             ++ AY   G ++E    F  M +    P++  +  M+D   R  +L+EA  L+  MP
Sbjct: 438 AGLLTAYNHAGLVDEGYLCFSSMKDHGLAPLADHYGIMVDLLGRAGRLEEAYELIHSMP 496



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 160/301 (53%), Gaps = 15/301 (4%)

Query: 145 AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS 204
           A+V  Y+K+G+   A+K+ D M  KN+VSWNS+LSGY K G +  A K F+ M  +D +S
Sbjct: 144 ALVDFYSKLGDMGFAQKVFDEMTEKNVVSWNSILSGYVKIGNLVDAQKLFDEMPVKDAIS 203

Query: 205 WNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV 264
           WN ML G+    ++D A   FQ++ E++  SW  M+ GY   G M  AR LFD MP RN 
Sbjct: 204 WNSMLTGFSNSGNMDRACCLFQQMGEKSSASWNAMIGGYVNCGDMKAARNLFDVMPNRNN 263

Query: 265 VAWNAMIAAYVQRGQIEEAARLF--IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM- 321
           V    +IA Y + G++  A  LF  +E  E+  +S+  MI  Y + +  ++A  L + M 
Sbjct: 264 VTRITLIAGYSKLGEVNSAYELFDKMEESEKELLSFNAMIACYSQNSMPNKALELFNLML 323

Query: 322 -PYKNIAAQ----TAMISGYVQNKRMDEANQI---FDKIGTH-DVVCWNVMIKGYAQCGR 372
            P+ NI        ++IS   Q   +     I    +K+G   D      ++  YA+ G 
Sbjct: 324 QPHVNIQPDEMTFASVISACTQLGNLSYGTWIESYMEKLGIELDDHLATALVDLYAKSGN 383

Query: 373 MDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRR---NTVSWNALISG 429
           ++ A  LF  +  +D+V ++ MI G     +  +A+++F+EM +     N V++  L++ 
Sbjct: 384 INRAFELFNGLKKRDLVAYSAMIFGCGINSKAHEAIRLFKEMLRVNICPNLVTYAGLLTA 443

Query: 430 F 430
           +
Sbjct: 444 Y 444



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 4/169 (2%)

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
           +  +  +W   +  F QN   ++A+  +V M + G       ++  L AC  +     G 
Sbjct: 65  RNPDAFTWACAVRFFSQNGQFMEAIAHYVQMQRLGLHPSTFAVSSTLRACGRIMCKFRGW 124

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
            IH    K G+   ++V  +L+  Y+K G +  A+ +F +    +V+SWNS+++GY   G
Sbjct: 125 CIHAQVYKLGFCRCVYVQTALVDFYSKLGDMGFAQKVFDEMTEKNVVSWNSILSGYVKIG 184

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584
           N  +A KLF+EM ++    D +++  +L+  S+ G +D    LF+ M E
Sbjct: 185 NLVDAQKLFDEMPVK----DAISWNSMLTGFSNSGNMDRACCLFQQMGE 229


>gi|347954492|gb|AEP33746.1| chloroplast biogenesis 19, partial [Barbarea verna]
          Length = 494

 Score =  325 bits (833), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 181/482 (37%), Positives = 274/482 (56%), Gaps = 30/482 (6%)

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKL 311
            +Q      V+W + I    + G++ EAA+ F  M     E N +++  ++ G   ++  
Sbjct: 22  LNQSTSETTVSWTSRITLLSRNGRLAEAAKEFSSMRLAGVEPNHITFIALLSGCGDVSSG 81

Query: 312 DEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCG 371
            EA  L D            ++ GY     +D          TH V+    ++  Y++ G
Sbjct: 82  SEA--LGD------------LLHGYACKLGLDR---------TH-VMVGTAILGMYSKRG 117

Query: 372 RMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFL 431
           R  +A  +F  M +K+ VTWNTMI GY +  Q+++AVK+F+EM   R+ +SW A+I+GF+
Sbjct: 118 RFGKARLVFDFMEDKNSVTWNTMIDGYMRSGQVNNAVKLFDEM-PERDLISWTAMINGFV 176

Query: 432 QNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLF 491
           +  FH +AL  F  M   G K D+  +  AL+AC HL AL  G  +H   +   + N++ 
Sbjct: 177 KKGFHEEALAWFREMQISGVKPDYVAIIAALAACTHLGALSFGLWVHRYVMNQDFKNNIR 236

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
           V NSLI +Y +CG ++ A  +F   +   V+SWNS+I G+A NGNA E++  F +M  EG
Sbjct: 237 VSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEG 296

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
             PD VTF G L+ACSHVGLV+ GL+ F+ M   + I P +EHY C++DL SRAGRL++A
Sbjct: 297 FKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEDA 356

Query: 612 FEMVKGMKIKPNAGIWGTLLGACRMH-QNIKLGRIAVEKLSELEPQKTSCYALLSNMHAE 670
             +V+ M +KPN  + G+LL ACR H  N  L    V+ LS+L  +  S Y +LSNM+A 
Sbjct: 357 LNVVQSMPMKPNEVVIGSLLAACRNHGNNTVLAERLVKHLSDLNVKSHSNYVILSNMYAA 416

Query: 671 AGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQ 730
            G W+   K+R  M+G G +KQPG S +E+ +  H F++GD     TA I   L+ +++ 
Sbjct: 417 DGIWEGASKMRRKMKGLGLKKQPGFSSVEIDDCTHVFMAGDSAHVETAYIREVLELISSD 476

Query: 731 IR 732
           +R
Sbjct: 477 LR 478



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 139/269 (51%), Gaps = 17/269 (6%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           K GR  +A  +F  M  KN+VT+N+MI  Y ++G+VN+A KLF++MP+R+L+SW +MI G
Sbjct: 115 KRGRFGKARLVFDFMEDKNSVTWNTMIDGYMRSGQVNNAVKLFDEMPERDLISWTAMING 174

Query: 87  YLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KED 139
           ++     +EA   F +M     +PD  +    +   T  G L     +   + N   K +
Sbjct: 175 FVKKGFHEEALAWFREMQISGVKPDYVAIIAALAACTHLGALSFGLWVHRYVMNQDFKNN 234

Query: 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE 199
               N+++  Y + G    A+++ D M  + +VSWNS++ G+  NG  H +  +F  M+E
Sbjct: 235 IRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQE 294

Query: 200 R----DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRML 250
                D V++   L     +  ++   ++FQ +   + +S     +  ++  Y+R GR+ 
Sbjct: 295 EGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLE 354

Query: 251 EARRLFDQMPIR-NVVAWNAMIAAYVQRG 278
           +A  +   MP++ N V   +++AA    G
Sbjct: 355 DALNVVQSMPMKPNEVVIGSLLAACRNHG 383



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 183/398 (45%), Gaps = 55/398 (13%)

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVE---- 214
           L+   S+  VSW S ++  ++NG +  A+K F +M     E + +++  +L G  +    
Sbjct: 22  LNQSTSETTVSWTSRITLLSRNGRLAEAAKEFSSMRLAGVEPNHITFIALLSGCGDVSSG 81

Query: 215 ---LDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMI 271
              L DL   +     +   +V+    +L  Y++ GR  +AR +FD M  +N V WN MI
Sbjct: 82  SEALGDLLHGYACKLGLDRTHVMVGTAILGMYSKRGRFGKARLVFDFMEDKNSVTWNTMI 141

Query: 272 AAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ-T 330
             Y++ GQ+  A +LF EMPER+ +SWT MI+G+V+    +EA     +M    +     
Sbjct: 142 DGYMRSGQVNNAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYV 201

Query: 331 AMISGYVQNKRMDEAN-------QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383
           A+I+       +   +        + ++   +++   N +I  Y +CG ++ A  +F +M
Sbjct: 202 AIIAALAACTHLGALSFGLWVHRYVMNQDFKNNIRVSNSLIDLYCRCGCVEFAREVFDKM 261

Query: 384 VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIF 443
             + +V+WN++I G+A      +++  F +                              
Sbjct: 262 EKRTVVSWNSVIVGFAANGNAHESLVYFRK------------------------------ 291

Query: 444 VLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG-NSLITMYAK 502
             M +EG K D  T   AL+AC+H+  ++ G +      +   ++        L+ +Y++
Sbjct: 292 --MQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSR 349

Query: 503 CGRIQNAELLFKD--ADPVDVISWNSLIAGYAINGNAT 538
            GR+++A  + +     P +V+   SL+A    +GN T
Sbjct: 350 AGRLEDALNVVQSMPMKPNEVV-IGSLLAACRNHGNNT 386



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 150/329 (45%), Gaps = 58/329 (17%)

Query: 21  KITQLGKSGRVEEAIKIFSQMS----QKNTVTYNSMISA--------------------- 55
           +IT L ++GR+ EA K FS M     + N +T+ +++S                      
Sbjct: 36  RITLLSRNGRLAEAAKEFSSMRLAGVEPNHITFIALLSGCGDVSSGSEALGDLLHGYACK 95

Query: 56  -----------------YAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARE 98
                            Y+K GR   AR +F+ M  +N V+WN+MI GY+ + +V  A +
Sbjct: 96  LGLDRTHVMVGTAILGMYSKRGRFGKARLVFDFMEDKNSVTWNTMIDGYMRSGQVNNAVK 155

Query: 99  LFDKMFRPDLFSWALMITCYTRKGELEKARELF---DLLPNKEDTACWNAMVAGYAKIGN 155
           LFD+M   DL SW  MI  + +KG  E+A   F    +   K D     A +A    +G 
Sbjct: 156 LFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALAACTHLGA 215

Query: 156 YNEA----KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
            +      + +++     NI   NS++  Y + G +  A + F+ ME+R VVSWN ++ G
Sbjct: 216 LSFGLWVHRYVMNQDFKNNIRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVG 275

Query: 212 YVELDDLDSAWKFFQKIPEQ----NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA- 266
           +    +   +  +F+K+ E+    + V++   L+  +  G + E  R F  M   + ++ 
Sbjct: 276 FAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISP 335

Query: 267 ----WNAMIAAYVQRGQIEEAARLFIEMP 291
               +  ++  Y + G++E+A  +   MP
Sbjct: 336 RIEHYGCLVDLYSRAGRLEDALNVVQSMP 364



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 182/378 (48%), Gaps = 47/378 (12%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP----QRNLVSWNS 82
           KS +++  +K+ +Q + + TV++ S I+  ++NGR+ +A K F  M     + N +++ +
Sbjct: 12  KSSQIQRILKL-NQSTSETTVSWTSRITLLSRNGRLAEAAKEFSSMRLAGVEPNHITFIA 70

Query: 83  MIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTAC 142
           +++G    D    +  L D            ++  Y  K  L++   +            
Sbjct: 71  LLSGC--GDVSSGSEALGD------------LLHGYACKLGLDRTHVMVG---------- 106

Query: 143 WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV 202
             A++  Y+K G + +A+ + D M  KN V+WN+M+ GY ++G+++ A K F+ M ERD+
Sbjct: 107 -TAILGMYSKRGRFGKARLVFDFMEDKNSVTWNTMIDGYMRSGQVNNAVKLFDEMPERDL 165

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEA----RR 254
           +SW  M++G+V+    + A  +F+++    V    V+ +  L+     G +       R 
Sbjct: 166 ISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALAACTHLGALSFGLWVHRY 225

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
           + +Q    N+   N++I  Y + G +E A  +F +M +R  VSW ++I G+       E+
Sbjct: 226 VMNQDFKNNIRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHES 285

Query: 315 ----RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC-----WNVMIK 365
               R++ ++    +    T  ++       ++E  + F  +     +      +  ++ 
Sbjct: 286 LVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVD 345

Query: 366 GYAQCGRMDEAINLFRQM 383
            Y++ GR+++A+N+ + M
Sbjct: 346 LYSRAGRLEDALNVVQSM 363



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 125/265 (47%), Gaps = 20/265 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP----Q 74
           N  I    +SG+V  A+K+F +M +++ +++ +MI+ + K G   +A   F +M     +
Sbjct: 138 NTMIDGYMRSGQVNNAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVK 197

Query: 75  RNLVSWNSMIAGYLHNDKVKEA----RELFDKMFRPDLFSWALMITCYTRKGELEKAREL 130
            + V+  + +A   H   +       R + ++ F+ ++     +I  Y R G +E ARE+
Sbjct: 198 PDYVAIIAALAACTHLGALSFGLWVHRYVMNQDFKNNIRVSNSLIDLYCRCGCVEFAREV 257

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEA----KKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           FD +  K     WN+++ G+A  GN +E+    +K+ +     + V++   L+  +  G 
Sbjct: 258 FDKM-EKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGL 316

Query: 187 MHLASKFFEAMEERDVVS-----WNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSWVTML 240
           +    ++F+ M+    +S     +  ++D Y     L+ A    Q +P + N V   ++L
Sbjct: 317 VEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEDALNVVQSMPMKPNEVVIGSLL 376

Query: 241 SGYARNG-RMLEARRLFDQMPIRNV 264
           +    +G   + A RL   +   NV
Sbjct: 377 AACRNHGNNTVLAERLVKHLSDLNV 401


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  325 bits (833), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 217/755 (28%), Positives = 389/755 (51%), Gaps = 76/755 (10%)

Query: 52  MISAYAKNGRVND---------ARKLFEQMPQRNL-VSWNSMIAGYLHNDKVKEARELFD 101
           +++  A   RV D         AR   +++P+R+  V  N ++  Y     V E  + F 
Sbjct: 29  LLATRASPARVEDGVCLRDPPGARYPLDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFS 88

Query: 102 KMFRPDLFSWALMITCYTRKGELEKARELFDLLP--------NKEDTACWNAMVAGYAKI 153
              R  +   +  ++C  +       R L + L         ++ + +   ++V  Y K 
Sbjct: 89  VARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKC 148

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH--LASKFFEAMEE---RDVVSWNLM 208
           G+  E  ++ + MP KN+V+W S+L+G   + +MH  + + FF    E    +  ++  +
Sbjct: 149 GSVCEGIEVFEGMPKKNVVTWTSLLTG-CAHAQMHSEVMALFFRMRAEGIWPNPFTFASV 207

Query: 209 LDGYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNV 264
           L        LD   +   +  +    S V    ++++ YA+ G + +A+ +F+ M  R++
Sbjct: 208 LSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDM 267

Query: 265 VAWNAMIAAYVQRGQIE-EAARLFIE----MPERNPVSWTTMIDGYVRIAKLDEARRL-- 317
           V+WN ++A  +Q  + E EA +LF E    M +    ++ T+I     + +L  AR+L  
Sbjct: 268 VSWNTLMAG-LQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHS 326

Query: 318 --LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD-KIGTHDVVCWNVMIKGYAQCGRMD 374
             L    +      TA+   Y +   + +A  IF    G+ +VV W  +I G  Q G + 
Sbjct: 327 CVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIP 386

Query: 375 EAINLFRQM--------------------------VNKDIVTWN---------TMIAGYA 399
            A+ LF +M                          ++  ++  N          ++A Y+
Sbjct: 387 LAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPSVGTALLASYS 446

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
           +    +DA+ IF+ M ++++ V+W+A++S   Q      A  +F  M  +G K +  T++
Sbjct: 447 KFGSTEDALSIFK-MIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTIS 505

Query: 460 CALSACAHLAA-LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
             + ACA  +A +  GRQ H ++IK  Y + + V ++L++MY++ G I +A+++F+    
Sbjct: 506 SVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTD 565

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
            D++SWNS+I+GYA +G + +AI+ F +M   G+  D VTF+ V+  C+H GLV  G + 
Sbjct: 566 RDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQY 625

Query: 579 FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQ 638
           F+ M   + I P +EHYACM+DL SRAG+LDE   +++ M     A +W TLLGACR+H+
Sbjct: 626 FDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHK 685

Query: 639 NIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWI 698
           N++LG+ + +KL  LEP  +S Y LLSN++A AG+W E ++VR  M+    +K+ GCSWI
Sbjct: 686 NVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWI 745

Query: 699 EVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           ++KN++H+F++ D     + +I   LK +  +++ 
Sbjct: 746 QIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQ 780



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 129/551 (23%), Positives = 247/551 (44%), Gaps = 67/551 (12%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
            S++  Y K G V +  ++FE MP++N+V+W S++ G  H     E   LF +M      
Sbjct: 139 TSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIW 198

Query: 106 PDLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNEAKKL 162
           P+ F++A +++    +G L+  + +         +      N+++  YAK G   +AK +
Sbjct: 199 PNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSV 258

Query: 163 LDAMPSKNIVSWNSMLSGYTKN-GEMHLASKFFEA---MEERDVVSWNLMLDGYVELDDL 218
            + M ++++VSWN++++G   N  E+     F E+   M +    ++  ++     L  L
Sbjct: 259 FNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQL 318

Query: 219 DSAWKFFQKIPEQ------NVVSWVTMLSGYARNGRMLEARRLFDQMP-IRNVVAWNAMI 271
             A +    + +       NV++   +   Y++ G + +A  +F      RNVV+W A+I
Sbjct: 319 ALARQLHSCVLKHGFHLTGNVMT--ALADAYSKCGELADALNIFSMTTGSRNVVSWTAII 376

Query: 272 AAYVQRGQIEEAARLFIEMPE----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI- 326
           +  +Q G I  A  LF  M E     N  +++ M+   + I       +++ +  Y++I 
Sbjct: 377 SGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVI-KTNYQHIP 435

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
           +  TA+++ Y +    ++A  IF  I   DVV W+ M+  +AQ G  + A  LF +M  +
Sbjct: 436 SVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQ 495

Query: 387 DI----VTWNTMI-------AGYAQIRQMD----------------------------DA 407
            I     T +++I       AG  Q RQ                              D+
Sbjct: 496 GIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDS 555

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
            +I  E    R+ VSWN++ISG+ Q+ + + A++ F  M   G + D  T    +  C H
Sbjct: 556 AQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTH 615

Query: 468 LAALQLGRQIHHLAIKSGYVNDLFVGNS-LITMYAKCGRIQNAELLFKDAD-PVDVISWN 525
              +  G+Q     ++   +N      + ++ +Y++ G++     L +D   P   + W 
Sbjct: 616 NGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWR 675

Query: 526 SLIAGYAINGN 536
           +L+    ++ N
Sbjct: 676 TLLGACRVHKN 686



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 129/276 (46%), Gaps = 17/276 (6%)

Query: 372 RMDEAINLFRQMVNKDIVTWNT--MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
           R   A+NL  + V K + T  +   +     +R    A    +E+ +R   V  N ++  
Sbjct: 14  RGKNAVNLAPEQVPKLLATRASPARVEDGVCLRDPPGARYPLDEIPRRDAAVGANRVLFD 73

Query: 430 FLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY-VN 488
           + +     + L  F +  + G   D +TL+C L AC  +    LG Q+H L +K G+   
Sbjct: 74  YARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRG 133

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           ++  G SL+ MY KCG +     +F+     +V++W SL+ G A     +E + LF  M 
Sbjct: 134 EVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMR 193

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKL------FECMTEVYAIEPLVEHYACMIDLL 602
            EG+ P+P TF  VLSA +  G +D G ++      F C + V+    L+  YA      
Sbjct: 194 AEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYA------ 247

Query: 603 SRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQ 638
            + G +++A  +   M+ +     W TL+   ++++
Sbjct: 248 -KCGLVEDAKSVFNWMETRDMVS-WNTLMAGLQLNE 281



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 152/350 (43%), Gaps = 52/350 (14%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP----QRNL 77
           +    K G  E+A+ IF  + QK+ V +++M+S +A+ G    A  LF +M     + N 
Sbjct: 442 LASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNE 501

Query: 78  VSWNSMI-AGYLHNDKVKEAREL----FDKMFRPDLFSWALMITCYTRKGELEKARELFD 132
            + +S+I A    +  V + R+         +   +   + +++ Y+RKG ++ A+ +F+
Sbjct: 502 FTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFE 561

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMH 188
              ++ D   WN+M++GYA+ G   +A +    M +  I    V++ +++ G T NG + 
Sbjct: 562 RQTDR-DLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVV 620

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGR 248
              ++F++M     +  N  ++ Y  + DL                        Y+R G+
Sbjct: 621 EGQQYFDSMVRDHKI--NPTMEHYACMVDL------------------------YSRAGK 654

Query: 249 MLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQIEE---AARLFIEMPERNPVSWTTMIDG 304
           + E   L   MP     + W  ++ A      +E    +A   + +   +  ++  + + 
Sbjct: 655 LDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNI 714

Query: 305 YVRIAK---LDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK 351
           Y    K    DE R+L+D   Y+ +  +      ++Q K    +   FDK
Sbjct: 715 YAAAGKWKERDEVRKLMD---YRKVKKEAG--CSWIQIKNKVHSFIAFDK 759


>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
 gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
          Length = 655

 Score =  325 bits (833), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 175/478 (36%), Positives = 273/478 (57%), Gaps = 15/478 (3%)

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           ++V+  NA++  Y     + +A +LF EM +R+ VSWTT++DGY R    DEA R+  +M
Sbjct: 164 QSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEAWRVFCRM 223

Query: 322 PYKN----------IAAQTAMISGYVQNKRMDEANQIFDKIGTH-DVVCWNVMIKGYAQC 370
                          AA  A   G +   RM   +Q   + G    V   N ++  + +C
Sbjct: 224 VVAGGGWPNEVTLVAAASAAGQIGLLGLGRM--VHQCVVESGVRMSVNLENALVDMFGKC 281

Query: 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
           G +  A  +F  M  KD+ +W +M++ YA+   +++A K+F+E+   RN VSW+ +++ +
Sbjct: 282 GCVASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEI-PNRNAVSWSCMVAAY 340

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN-D 489
            Q     +A++IF  M   G +   +TL   LSACA L  L +GR ++   I S  V   
Sbjct: 341 SQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAYIVSHKVELT 400

Query: 490 LFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549
           + + N+ I M+AKCG +  A  LF++ +  +V+SWN++I  +A++G + EA+ LF++   
Sbjct: 401 VNLSNAFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAHALHGQSEEALHLFQKFKA 460

Query: 550 EGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLD 609
            G+ PD +T+IGVLSACSH GLV  G   F+ M  VY IEP  EHYACMIDLL + G L+
Sbjct: 461 IGIFPDEITYIGVLSACSHSGLVSEGRYHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLE 520

Query: 610 EAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHA 669
           EAFE+ + M +  +   WG LL ACRMH N+++G+ A +KL  L+P  +  Y L+S ++A
Sbjct: 521 EAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLVGLDPSDSGIYVLMSQIYA 580

Query: 670 EAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
              +W +V+ +R  M   G +K PGCS IEV  + H FL+ D     + +I   L+ +
Sbjct: 581 SKSKWGQVKMIRTVMRDRGVKKNPGCSSIEVDGKFHEFLAADVSHAHSEDIYAALENI 638



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 183/403 (45%), Gaps = 68/403 (16%)

Query: 106 PDLFSWALMITCYTRKGELEKARELF-----DLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
           P+ +  A M+  + R G+   A  LF     D LP    T  +    A  +   +  EA 
Sbjct: 95  PNAYMLATMMRGFLRAGKPAHALALFRRVLRDRLPADARTIVFAVKAATTSS--SPAEAI 152

Query: 161 KLLD---AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDD 217
             +        ++++  N+++  Y  +  +  A K F+ M +RDVVSW  ++DGY     
Sbjct: 153 HCVAFKRGFIGQSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGL 212

Query: 218 LDSAWKFF------------------------------------QKIPEQNVVSWV---- 237
            D AW+ F                                    Q + E  V   V    
Sbjct: 213 PDEAWRVFCRMVVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNLEN 272

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
            ++  + + G +  A+ +FD MPI++V +W +M++AY + G +E A +LF E+P RN VS
Sbjct: 273 ALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNAVS 332

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNI----AAQTAMISGYVQNKRMDEANQIFDK-I 352
           W+ M+  Y +    +EA R+ + M    +    A   +++S   Q   +D    ++D  I
Sbjct: 333 WSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAYI 392

Query: 353 GTHDVVCW----NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAV 408
            +H V       N  I  +A+CG +  A  LFR M +K++V+WNTMI  +A   Q ++A+
Sbjct: 393 VSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAHALHGQSEEAL 452

Query: 409 KIFEE---MGKRRNTVSWNALI-----SGFL-QNEFHLDALKI 442
            +F++   +G   + +++  ++     SG + +  +H   +KI
Sbjct: 453 HLFQKFKAIGIFPDEITYIGVLSACSHSGLVSEGRYHFKEMKI 495



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 176/384 (45%), Gaps = 37/384 (9%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
           ++ +  N+++  YA +  + DARKLF++M  R++VSW +++ GY       EA  +F +M
Sbjct: 164 QSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEAWRVFCRM 223

Query: 104 FR-----PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGN 155
                  P+  +     +   + G L   R +   +     +      NA+V  + K G 
Sbjct: 224 VVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNLENALVDMFGKCGC 283

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL 215
              AK++ D MP K++ SW SM+S Y K G++  A K F+ +  R+ VSW+ M+  Y + 
Sbjct: 284 VASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQA 343

Query: 216 DDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW---- 267
           +  + A + F  +    V     + V++LS  A+ G +   R L+D   + + V      
Sbjct: 344 NLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAYIVSHKVELTVNL 403

Query: 268 -NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLL-------- 318
            NA I  + + G +  A+RLF  M ++N VSW TMI  +    + +EA  L         
Sbjct: 404 SNAFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAHALHGQSEEALHLFQKFKAIGI 463

Query: 319 --DQMPYKNIAAQTAMISGYVQNKR--MDEANQIF--DKIGTHDVVCWNVMIKGYAQCGR 372
             D++ Y  + +  +  SG V   R    E   ++  +    H    +  MI    + G 
Sbjct: 464 FPDEITYIGVLSACSH-SGLVSEGRYHFKEMKIVYGIEPRAEH----YACMIDLLGKVGL 518

Query: 373 MDEAINLFRQM-VNKDIVTWNTMI 395
           ++EA  + R M V  D   W  ++
Sbjct: 519 LEEAFEVARSMPVGADEAGWGALL 542



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 137/289 (47%), Gaps = 34/289 (11%)

Query: 381 RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440
           R  + + ++  N ++  YA    + DA K+F+EM   R+ VSW  L+ G+ +     +A 
Sbjct: 159 RGFIGQSVLVGNALVHMYASSMSLPDARKLFDEMAD-RDVVSWTTLVDGYARGGLPDEAW 217

Query: 441 KIFVLMTQEGKK-ADHSTLACALSACAHLAALQLGRQIHHLAIKSGY------------- 486
           ++F  M   G    +  TL  A SA   +  L LGR +H   ++SG              
Sbjct: 218 RVFCRMVVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQCVVESGVRMSVNLENALVDM 277

Query: 487 ------------------VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
                             + D++   S+++ YAKCG ++NA  LFK+    + +SW+ ++
Sbjct: 278 FGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNAVSWSCMV 337

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI 588
           A Y+      EA+++F +M+  GV P   T + VLSAC+ +G +D G  L++     + +
Sbjct: 338 AAYSQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAYIVSHKV 397

Query: 589 EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMH 637
           E  V      ID+ ++ G +  A  + + M+ K N   W T++ A  +H
Sbjct: 398 ELTVNLSNAFIDMFAKCGDVGAASRLFRNMEDK-NVVSWNTMIVAHALH 445



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 135/282 (47%), Gaps = 18/282 (6%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
           +N  +   GK G V  A +IF  M  K+  ++ SM+SAYAK G + +A KLF+++P RN 
Sbjct: 271 ENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGKLFKEIPNRNA 330

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFD- 132
           VSW+ M+A Y   +  +EA  +F+ M      P   +   +++   + G L+  R L+D 
Sbjct: 331 VSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDA 390

Query: 133 -LLPNKEDTAC--WNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE--- 186
            ++ +K +      NA +  +AK G+   A +L   M  KN+VSWN+M+  +  +G+   
Sbjct: 391 YIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAHALHGQSEE 450

Query: 187 -MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-----EQNVVSWVTML 240
            +HL  KF       D +++  +L        +      F+++      E     +  M+
Sbjct: 451 ALHLFQKFKAIGIFPDEITYIGVLSACSHSGLVSEGRYHFKEMKIVYGIEPRAEHYACMI 510

Query: 241 SGYARNGRMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQIE 281
               + G + EA  +   MP+  +   W A++ A    G +E
Sbjct: 511 DLLGKVGLLEEAFEVARSMPVGADEAGWGALLNACRMHGNVE 552



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 13/166 (7%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL 77
            N  I    K G V  A ++F  M  KN V++N+MI A+A +G+  +A  LF++     +
Sbjct: 404 SNAFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAHALHGQSEEALHLFQKFKAIGI 463

Query: 78  ----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKAR 128
               +++  +++   H+  V E R  F +M       P    +A MI    + G LE+A 
Sbjct: 464 FPDEITYIGVLSACSHSGLVSEGRYHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLEEAF 523

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYN----EAKKLLDAMPSKN 170
           E+   +P   D A W A++      GN       A KL+   PS +
Sbjct: 524 EVARSMPVGADEAGWGALLNACRMHGNVEIGKCAADKLVGLDPSDS 569


>gi|15226463|ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g21090
 gi|4803934|gb|AAD29807.1| unknown protein [Arabidopsis thaliana]
 gi|330252028|gb|AEC07122.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 597

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 178/504 (35%), Positives = 293/504 (58%), Gaps = 12/504 (2%)

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW 298
           ++  Y + G+ ++A ++FDQM +RN+ +WN M++ YV+ G +  A  +F  MPER+ VSW
Sbjct: 88  LIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSW 147

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIA----AQTAMISGYVQNKRMDEANQIFDKIGT 354
            TM+ GY +   L EA     +     I     +   +++  V+++++    Q   ++  
Sbjct: 148 NTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLV 207

Query: 355 ----HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKI 410
                +VV    +I  YA+CG+M+ A   F +M  KDI  W T+I+GYA++  M+ A K+
Sbjct: 208 AGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKL 267

Query: 411 FEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAA 470
           F EM ++ N VSW ALI+G+++      AL +F  M   G K +  T +  L A A +A+
Sbjct: 268 FCEMPEK-NPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIAS 326

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD-PVDVISWNSLIA 529
           L+ G++IH   I++    +  V +SLI MY+K G ++ +E +F+  D   D + WN++I+
Sbjct: 327 LRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMIS 386

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE 589
             A +G   +A+++ ++M+   V P+  T + +L+ACSH GLV+ GL+ FE MT  + I 
Sbjct: 387 ALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIV 446

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649
           P  EHYAC+IDLL RAG   E    ++ M  +P+  IW  +LG CR+H N +LG+ A ++
Sbjct: 447 PDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAADE 506

Query: 650 LSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFL- 708
           L +L+P+ ++ Y LLS+++A+ G+W+ VEK+R  M+     K+   SWIE++ ++  F  
Sbjct: 507 LIKLDPESSAPYILLSSIYADHGKWELVEKLRGVMKKRRVNKEKAVSWIEIEKKVEAFTV 566

Query: 709 -SGDPKQCRTAEICNTLKTLAAQI 731
             G     R  EI   L  LAA I
Sbjct: 567 SDGSHAHARKEEIYFILHNLAAVI 590



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 128/475 (26%), Positives = 215/475 (45%), Gaps = 93/475 (19%)

Query: 137 KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEA 196
           + +T   N ++  Y K G   +A K+ D M  +N+ SWN+M+SGY K+G +  A   F++
Sbjct: 79  RPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDS 138

Query: 197 MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ------------------------- 231
           M ERDVVSWN M+ GY +  +L  A  F+++                             
Sbjct: 139 MPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLN 198

Query: 232 --------------NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR 277
                         NVV   +++  YA+ G+M  A+R FD+M ++++  W  +I+ Y + 
Sbjct: 199 RQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKL 258

Query: 278 GQIEEAARLFIEMPERNPVSWTTMIDGYVRIAK----LDEARRLL------DQMPYKNIA 327
           G +E A +LF EMPE+NPVSWT +I GYVR       LD  R+++      +Q  + +  
Sbjct: 259 GDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCL 318

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK- 386
             +A I+     K +     I   +  + +V  + +I  Y++ G ++ +  +FR   +K 
Sbjct: 319 CASASIASLRHGKEI-HGYMIRTNVRPNAIVI-SSLIDMYSKSGSLEASERVFRICDDKH 376

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446
           D V WNTMI+  AQ      A+++ ++M K R                            
Sbjct: 377 DCVFWNTMISALAQHGLGHKALRMLDDMIKFR---------------------------- 408

Query: 447 TQEGKKADHSTLACALSACAHLAALQLG-RQIHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
                + + +TL   L+AC+H   ++ G R    + ++ G V D      LI +  + G 
Sbjct: 409 ----VQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGC 464

Query: 506 IQNAELLFKDAD-PV--DVISWNSLIAGYAINGNATEAIKLFEEMVM---EGVAP 554
            +  EL+ K  + P   D   WN+++    I+GN     K  +E++    E  AP
Sbjct: 465 FK--ELMRKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAADELIKLDPESSAP 517



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 165/337 (48%), Gaps = 24/337 (7%)

Query: 5   LKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND 64
           LK  G K       N  I    K G+  +A K+F QM  +N  ++N+M+S Y K+G +  
Sbjct: 72  LKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVR 131

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL----FSWALMITCYTR 120
           AR +F+ MP+R++VSWN+M+ GY  +  + EA   + +  R  +    FS+A ++T   +
Sbjct: 132 ARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVK 191

Query: 121 KGELEKARE-----LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN 175
             +L+  R+     L     +    +C  +++  YAK G    AK+  D M  K+I  W 
Sbjct: 192 SRQLQLNRQAHGQVLVAGFLSNVVLSC--SIIDAYAKCGQMESAKRCFDEMTVKDIHIWT 249

Query: 176 SMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI------P 229
           +++SGY K G+M  A K F  M E++ VSW  ++ GYV     + A   F+K+      P
Sbjct: 250 TLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKP 309

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAAR 285
           EQ   S  + L   A    +   + +   M   NV    +  +++I  Y + G +E + R
Sbjct: 310 EQFTFS--SCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASER 367

Query: 286 LF-IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           +F I   + + V W TMI    +     +A R+LD M
Sbjct: 368 VFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDM 404



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 106/246 (43%), Gaps = 42/246 (17%)

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIH-HLAIKSGYVNDLFVGNSLITMYAKCG 504
           +TQ+G +     LA  L  C    +L+ G+ IH HL I      +  + N LI MY KCG
Sbjct: 37  LTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCG 96

Query: 505 R-------------------------------IQNAELLFKDADPVDVISWNSLIAGYAI 533
           +                               +  A ++F      DV+SWN+++ GYA 
Sbjct: 97  KPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQ 156

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVE 593
           +GN  EA+  ++E    G+  +  +F G+L+AC     +    +    +     +  +V 
Sbjct: 157 DGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVV- 215

Query: 594 HYAC-MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI-AVEKLS 651
             +C +ID  ++ G+++ A      M +K +  IW TL+         KLG + A EKL 
Sbjct: 216 -LSCSIIDAYAKCGQMESAKRCFDEMTVK-DIHIWTTLISG-----YAKLGDMEAAEKLF 268

Query: 652 ELEPQK 657
              P+K
Sbjct: 269 CEMPEK 274



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 88/202 (43%), Gaps = 18/202 (8%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQK-NTVTYNSMISAYAKNGRVNDARKLFEQM----PQRN 76
           I    KSG +E + ++F     K + V +N+MISA A++G  + A ++ + M     Q N
Sbjct: 353 IDMYSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPN 412

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELF 131
             +   ++    H+  V+E    F+ M       PD   +A +I    R G  ++     
Sbjct: 413 RTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKI 472

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLD---AMPSKNIVSWNSMLSGYTKNGEMH 188
           + +P + D   WNA++      GN    KK  D    +  ++   +  + S Y  +G+  
Sbjct: 473 EEMPFEPDKHIWNAILGVCRIHGNEELGKKAADELIKLDPESSAPYILLSSIYADHGKWE 532

Query: 189 LASKFFEAMEERDV-----VSW 205
           L  K    M++R V     VSW
Sbjct: 533 LVEKLRGVMKKRRVNKEKAVSW 554


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 186/539 (34%), Positives = 306/539 (56%), Gaps = 36/539 (6%)

Query: 223 KFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM------PIRNV--VAWNAMIAAY 274
           K+F +    +V SW ++++  AR G   E+ R F  M      P R+    A  +  A +
Sbjct: 40  KYFDR---TDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALF 96

Query: 275 VQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMIS 334
                 +   +  +   E +    + +ID Y +  KL  AR L D++P +NI   T++I+
Sbjct: 97  DLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLIT 156

Query: 335 GYVQNKRMDEANQIF------------DKIGTH-DVVCWNVMIKGYAQCGRMD-----EA 376
           GYVQN    EA  +F            +++GT  D V    MI   + C R+      E 
Sbjct: 157 GYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSV---AMISVLSACSRVSNKAVSEG 213

Query: 377 INLFRQMVNKDIV--TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
           ++     V  D V    NT++  YA+  ++  + K+F++M ++ + VSWN++I+ + QN 
Sbjct: 214 VHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEK-DVVSWNSMIAVYAQNG 272

Query: 435 FHLDALKIFVLMTQEGK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG 493
              DA ++F  M + G  K +  TL+  L ACAH  AL++G  +H   IK GYVN++ + 
Sbjct: 273 LSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMA 332

Query: 494 NSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA 553
            S+I MY KCG+ + A   F      +V SW ++IAGY ++G A EA+ +F +M+  GV 
Sbjct: 333 TSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVK 392

Query: 554 PDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFE 613
           P+ +TFI VL+ACSH G ++ G + F  M+  Y +EP VEHY CM+DLL RAG + EA+ 
Sbjct: 393 PNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYN 452

Query: 614 MVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGR 673
           ++K MK++ +  +WG+LL ACR+H++++L  I+  +L +L+P     Y LL+N++A+AGR
Sbjct: 453 LIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGR 512

Query: 674 WDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           W +VE++R+ ++  G  K PG S +E+K ++H FL GD +  +  +I   L+ L+ +++
Sbjct: 513 WKDVERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKYLEELSVKLQ 571



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 139/278 (50%), Gaps = 45/278 (16%)

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           +F +   R +  SWN+LI+   +     ++L+ F  M +   K + ST  CA+ +C+ L 
Sbjct: 37  LFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALF 96

Query: 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIA 529
            L  G+Q H  A+  G+ +DLFV ++LI MY+KCG++ NA +LF +    ++++W SLI 
Sbjct: 97  DLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLIT 156

Query: 530 GYAINGNATEAIKLFEEMVME---------GVAPDPVTFIGVLSACSHV---GLVDG--G 575
           GY  N +A EA+ +F+E + E         G + D V  I VLSACS V    + +G  G
Sbjct: 157 GYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHG 216

Query: 576 LKLFECMTEVYAIE-PLVEHYA------------------------CMIDLLSRAGRLDE 610
           + +   + +V  +E  L++ YA                         MI + ++ G   +
Sbjct: 217 VAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTD 276

Query: 611 AFEMVKGMKIKPNAGIW-----GTLLGACRMHQNIKLG 643
           AFE+  GM +K   G +      TLL AC     +++G
Sbjct: 277 AFEVFHGM-LKAGGGKYNEVTLSTLLLACAHEGALRVG 313



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 170/396 (42%), Gaps = 48/396 (12%)

Query: 68  LFEQMPQR-NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEK 126
           LF +   R ++ SWNS+IA         E+   F  M + D+        C      ++ 
Sbjct: 37  LFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPC-----AIKS 91

Query: 127 ARELFDLLPNKE------------DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSW 174
              LFDL   K+            D    +A++  Y+K G  + A+ L D +P +NIV+W
Sbjct: 92  CSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTW 151

Query: 175 NSMLSGYTKNGEMHLA----SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPE 230
            S+++GY +N + H A     +F     E +       +D    +  L +  +   K   
Sbjct: 152 TSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVS 211

Query: 231 QNVVSWV-------------TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR 277
           + V                 T+L  YA+ G +  +R++FD M  ++VV+WN+MIA Y Q 
Sbjct: 212 EGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQN 271

Query: 278 GQIEEAARLFIEM-----PERNPVSWTTMIDGYVRIAKLDEARRLLDQ---MPY-KNIAA 328
           G   +A  +F  M      + N V+ +T++        L     L DQ   M Y  N+  
Sbjct: 272 GLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIM 331

Query: 329 QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----V 384
            T++I  Y +  + + A   FD +   +V  W  MI GY   G   EA+++F QM    V
Sbjct: 332 ATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGV 391

Query: 385 NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
             + +T+ +++A  +    +++  + F  M    N 
Sbjct: 392 KPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNV 427



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 97/379 (25%), Positives = 169/379 (44%), Gaps = 58/379 (15%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----- 104
           +++I  Y+K G++++AR LF+++P+RN+V+W S+I GY+ ND   EA  +F +       
Sbjct: 121 SALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSE 180

Query: 105 --------RPDLFSWALMITCYTR---KGELEKARELFDLLPNKEDTACWNAMVAGYAKI 153
                     D  +   +++  +R   K   E    +   +   +     N ++  YAK 
Sbjct: 181 GNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKC 240

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV 213
           G  + ++K+ D M  K++VSWNSM++ Y +NG    A + F  M         L   G  
Sbjct: 241 GEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGM---------LKAGG-- 289

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP----IRNVVAWNA 269
                           + N V+  T+L   A  G +     L DQ+     + NV+   +
Sbjct: 290 ---------------GKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATS 334

Query: 270 MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ 329
           +I  Y + GQ E A   F  M E+N  SWT MI GY       EA  +  QM +  +   
Sbjct: 335 IIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPN 394

Query: 330 ----TAMISGYVQNKRMDEANQIFDKIGTHD------VVCWNVMIKGYAQCGRMDEAINL 379
                ++++       ++E  + F+ + +H+      V  +  M+    + G + EA NL
Sbjct: 395 YITFISVLAACSHAGFLEEGWRWFNAM-SHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNL 453

Query: 380 FRQM-VNKDIVTWNTMIAG 397
            + M V +D V W +++A 
Sbjct: 454 IKSMKVRRDFVLWGSLLAA 472



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 105/470 (22%), Positives = 206/470 (43%), Gaps = 55/470 (11%)

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKL------LDAMPSKNI----VSWNSMLS 179
           LF+   ++ D   WN+++A  A+ G+  E+ +       LD  P+++     +   S L 
Sbjct: 37  LFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALF 96

Query: 180 GYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTM 239
                 + H  +  F    E D+   + ++D Y +   L +A   F +IP +N+V+W ++
Sbjct: 97  DLNSGKQAHQQALVFGF--ESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSL 154

Query: 240 LSGYARNGRMLEARRLFDQM----------PIRNVVAWNAMIAAYVQRGQIEEAA----- 284
           ++GY +N    EA  +F +            +   V   AMI+      ++   A     
Sbjct: 155 ITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGV 214

Query: 285 ---RLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKR 341
               + + + +   V   T++D Y +  ++  +R++ D M  K++ +  +MI+ Y QN  
Sbjct: 215 HGVAIKVGLDKVMGVE-NTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGL 273

Query: 342 MDEANQIFDKI-----GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN----KDIVTWN 392
             +A ++F  +     G ++ V  + ++   A  G +   + L  Q++      +++   
Sbjct: 274 STDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMAT 333

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
           ++I  Y +  Q + A   F+ M K +N  SW A+I+G+  + F  +AL +F  M   G K
Sbjct: 334 SIIDMYCKCGQAEMARNAFDGM-KEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVK 392

Query: 453 ADHSTLACALSACAHLAALQLG-----RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQ 507
            ++ T    L+AC+H   L+ G        H   ++ G  +       ++ +  + G I+
Sbjct: 393 PNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHY----GCMVDLLGRAGYIK 448

Query: 508 NAELLFKDAD-PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
            A  L K      D + W SL+A   I+ +    ++L E    E    DP
Sbjct: 449 EAYNLIKSMKVRRDFVLWGSLLAACRIHKD----VELAEISARELFKLDP 494



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 130/290 (44%), Gaps = 23/290 (7%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP--- 106
           N+++ AYAK G V+ +RK+F+ M ++++VSWNSMIA Y  N    +A E+F  M +    
Sbjct: 231 NTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGG 290

Query: 107 ---DLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAK 160
              ++    L++ C   +G L     L D +       +     +++  Y K G    A+
Sbjct: 291 KYNEVTLSTLLLAC-AHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMAR 349

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM----EERDVVSWNLMLDGYVELD 216
              D M  KN+ SW +M++GY  +G    A   F  M     + + +++  +L       
Sbjct: 350 NAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAG 409

Query: 217 DLDSAWKFFQKIP-----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPI-RNVVAWNAM 270
            L+  W++F  +      E  V  +  M+    R G + EA  L   M + R+ V W ++
Sbjct: 410 FLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSL 469

Query: 271 IAAYVQRGQIEEA---ARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRL 317
           +AA      +E A   AR   ++   N   +  + + Y    +  +  R+
Sbjct: 470 LAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGRWKDVERM 519



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 93/419 (22%), Positives = 182/419 (43%), Gaps = 48/419 (11%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM----- 72
           +N  +    K G V  + K+F  M++K+ V++NSMI+ YA+NG   DA ++F  M     
Sbjct: 230 ENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGG 289

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITC----YTRKGELEKAR 128
            + N V+ ++++    H   ++    L D++ +    +  +M T     Y + G+ E AR
Sbjct: 290 GKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMAR 349

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM----PSKNIVSWNSMLSGYTKN 184
             FD +  K +   W AM+AGY   G   EA  +   M       N +++ S+L+  +  
Sbjct: 350 NAFDGMKEK-NVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHA 408

Query: 185 GEMHLASKFFEAME-----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP-EQNVVSWVT 238
           G +    ++F AM      E  V  +  M+D       +  A+   + +   ++ V W +
Sbjct: 409 GFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGS 468

Query: 239 MLSGYARNGRM----LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN 294
           +L+    +  +    + AR LF   P  N   +  +   Y   G+ ++  R+ I + +R 
Sbjct: 469 LLAACRIHKDVELAEISARELFKLDP-SNCGYYVLLANIYADAGRWKDVERMRILVKDRG 527

Query: 295 ---PVSWTTM-IDGYVRIAKLDEARRLLDQMPYKNIAAQTAMI--SGYVQNKRM------ 342
              P  ++ + + G V +  + +      +  YK +   +  +  +GYV N         
Sbjct: 528 LVKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKYLEELSVKLQEAGYVPNMASVLHDVD 587

Query: 343 DEANQIFDKIGTHDV-VCWNVM----------IKGYAQCGRMDEAINLFRQMVNKDIVT 390
           +E  ++  ++ +  + V + VM          IK    CG     I L  ++V+++I+ 
Sbjct: 588 EEEKEMIVRVHSEKLAVAFGVMNSIPGSTIHVIKNLRVCGDCHTVIKLISKIVSREIIV 646


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  325 bits (832), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 173/534 (32%), Positives = 280/534 (52%), Gaps = 45/534 (8%)

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTT-- 300
           + +  R+ EA     ++P  +   ++ +IAA ++  ++E   R+       N +      
Sbjct: 42  FCQQNRLKEAVDYLHRIPQPSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVIS 101

Query: 301 --MIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV 358
             +I  Y +   L +A+ L D++P K++ +   MISGY    R+++A ++FD++   D  
Sbjct: 102 NRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNF 161

Query: 359 CWNVMIKGYAQCGRMDEAINLFRQM----------------------------------- 383
            WN +I GY   G   EA++LFR M                                   
Sbjct: 162 SWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGY 221

Query: 384 -----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLD 438
                +  D V W  ++  Y +   +++A  IF++M  + + VSW  +I    ++    +
Sbjct: 222 LIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADK-DIVSWTTMIHRCFEDGRKKE 280

Query: 439 ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLIT 498
              +F  +   G + +  T A  L+ACA LAA Q+G+++H    + GY    F  ++L+ 
Sbjct: 281 GFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVH 340

Query: 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558
           +Y+KCG  + A  +F      D++SW SLI GYA NG    A++ FE ++  G  PD +T
Sbjct: 341 VYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEIT 400

Query: 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618
           F+GVLSAC+H GLVD GL+ F  + E + +    +HYAC+IDLL+R+GR  EA  ++  M
Sbjct: 401 FVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNM 460

Query: 619 KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVE 678
            +KP+  +W +LLG CR+H NI+L   A + L ELEP+  + Y  LSN++A AG W E  
Sbjct: 461 PMKPDKFLWASLLGGCRIHGNIELAERAAKALFELEPENPATYITLSNIYANAGLWTEET 520

Query: 679 KVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           KVR  M+  G  K+PG SWIE+K Q+H FL GD    + ++I   L  L+ +++
Sbjct: 521 KVRNDMDNRGIVKKPGKSWIEIKRQVHVFLVGDTSHPKISDIHEYLGELSKKMK 574



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 105/437 (24%), Positives = 195/437 (44%), Gaps = 45/437 (10%)

Query: 30  RVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSW----NSMIA 85
           R++EA+    ++ Q +   Y+++I+A  ++ ++   +++       N +      N +I 
Sbjct: 47  RLKEAVDYLHRIPQPSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIH 106

Query: 86  GYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNA 145
            Y     + +A+ LFD++ + DL SW  MI+ Y   G +E+AR+LFD +P++ D   WNA
Sbjct: 107 MYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHR-DNFSWNA 165

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYT-----------KNGEMHLASKFF 194
           +++GY   G Y EA  L   M      + N                  +  E+H      
Sbjct: 166 VISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIH--GYLI 223

Query: 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARR 254
            +  E D V W  +LD Y +   L+ A   F ++ ++++VSW TM+     +GR  E   
Sbjct: 224 RSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFS 283

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER-----------NPVSW--TTM 301
           LF     R+++        Y   G +   A L  E   +           +P S+  + +
Sbjct: 284 LF-----RDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASAL 338

Query: 302 IDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI---GTH-DV 357
           +  Y +    + ARR+ +QMP  ++ + T++I GY QN + D A Q F+ +   GT  D 
Sbjct: 339 VHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDE 398

Query: 358 VCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT-----WNTMIAGYAQIRQMDDAVKIFE 412
           + +  ++      G +D  +  F  +  K  +      +  +I   A+  +  +A  I +
Sbjct: 399 ITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIID 458

Query: 413 EMGKRRNTVSWNALISG 429
            M  + +   W +L+ G
Sbjct: 459 NMPMKPDKFLWASLLGG 475



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/433 (24%), Positives = 192/433 (44%), Gaps = 39/433 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N+ I    K G + +A  +F ++ QK+  ++N+MIS YA  GR+  ARKLF++MP R+  
Sbjct: 102 NRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNF 161

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPD-----LFSWALMITCYTRKGELEKARELFDL 133
           SWN++I+GY+      EA +LF  M   +     +F+ +  +        L + +E+   
Sbjct: 162 SWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGY 221

Query: 134 LPNKE---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           L       D   W A++  Y K G+ NEA+ + D M  K+IVSW +M+    ++G     
Sbjct: 222 LIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEG 281

Query: 191 SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT------------ 238
              F     RD++   +  + Y     L++      +   + V  ++T            
Sbjct: 282 FSLF-----RDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAAS 336

Query: 239 -MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----PER 293
            ++  Y++ G    ARR+F+QMP  ++V+W ++I  Y Q GQ + A + F  +     + 
Sbjct: 337 ALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKP 396

Query: 294 NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA-----MISGYVQNKRMDEANQI 348
           + +++  ++        +D        +  K+    TA     +I    ++ R  EA  I
Sbjct: 397 DEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENI 456

Query: 349 FDKIGTH-DVVCWNVMIKGYAQCGRM---DEAINLFRQMVNKDIVTWNTMIAGYAQIRQM 404
            D +    D   W  ++ G    G +   + A     ++  ++  T+ T+   YA     
Sbjct: 457 IDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFELEPENPATYITLSNIYANAGLW 516

Query: 405 DDAVKIFEEMGKR 417
            +  K+  +M  R
Sbjct: 517 TEETKVRNDMDNR 529


>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
 gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
          Length = 695

 Score =  325 bits (832), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 171/479 (35%), Positives = 274/479 (57%), Gaps = 8/479 (1%)

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
           +V    A++  Y + G ++ A   F EMP ++P+    +I GY +   ++EARRL D MP
Sbjct: 208 DVFVQTALVDFYAKNGDMDSALMAFKEMPVKDPIPMNCLITGYSKSGDVEEARRLFDSMP 267

Query: 323 YKNIAAQTAMISGYVQNKRMDEANQIFDKI----GTHDVVCWNVMIKGYAQCGRMD---E 375
            +  A+  +MI+ Y       EA  +FD++     + + +    +    A+ G +D    
Sbjct: 268 RRTSASWNSMIACYAHGGEFREALTLFDQMLREGASPNAITITTVFSICAKTGDLDTGRR 327

Query: 376 AINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEF 435
           A    R+   ++++    ++  Y + R +D+A   F+ M  RR+ V+W+ +I+G+ QN  
Sbjct: 328 ARAWIREEDLQNVIVHTALMEMYVKCRAIDEARHEFDRM-PRRDVVAWSTMIAGYSQNGR 386

Query: 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNS 495
             ++L++F  M     K +  TL   LSACA L + +LG QI +           ++G++
Sbjct: 387 PHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGNYIESQTLPLTSYLGSA 446

Query: 496 LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555
           LI MY KCG +  A  +F   +   V++WNS+I G A+NG A +AI L+ +MV +G+ P+
Sbjct: 447 LIDMYTKCGHVARARSVFNRMEQKVVVTWNSMIRGLALNGFAEDAIALYRKMVGDGIQPN 506

Query: 556 PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV 615
            VTF+ +L+AC+H GLVD G+  FE M +   + P VEH AC++DLL ++GRL EA++ +
Sbjct: 507 EVTFVALLTACTHAGLVDKGIAFFEEMKKKQHVSPQVEHCACIVDLLCKSGRLWEAYKFI 566

Query: 616 KGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWD 675
             M+++PNA IW TLL ACR H +++L ++A  KL  LEP  +S Y LLSN++A+AG W 
Sbjct: 567 CDMEVEPNAVIWSTLLSACRAHADVELAKLAAGKLVALEPNNSSIYVLLSNIYADAGLWG 626

Query: 676 EVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNT 734
           +V ++R  M     QK    SWIE+  ++H FL  D    R+AEI N +  L  Q+  T
Sbjct: 627 DVREIRDLMRSKNLQKLSAYSWIELDGEVHRFLVQDTYHPRSAEIYNVVDGLGLQLERT 685



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 123/462 (26%), Positives = 207/462 (44%), Gaps = 62/462 (13%)

Query: 127 ARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLD-------AMPSKNI--VSWNSM 177
           AR LFD++P      C  A ++G +K+  + E  +++        A+PS  I  V  +  
Sbjct: 127 ARHLFDVVPRPTAALCC-AFLSGLSKLSLHQEFIEVVSSLHRRGGAIPSGCIPLVLKSCA 185

Query: 178 LSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV 237
            S  +  G           M   DV     ++D Y +  D+DSA   F+++P ++ +   
Sbjct: 186 QSAASCQGSQTHCHALVRGMLG-DVFVQTALVDFYAKNGDMDSALMAFKEMPVKDPIPMN 244

Query: 238 TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM----PER 293
            +++GY+++G + EARRLFD MP R   +WN+MIA Y   G+  EA  LF +M       
Sbjct: 245 CLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGASP 304

Query: 294 NPVSWTTMIDGYVRIAKLDEARRL---LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD 350
           N ++ TT+     +   LD  RR    + +   +N+   TA++  YV+ + +DEA   FD
Sbjct: 305 NAITITTVFSICAKTGDLDTGRRARAWIREEDLQNVIVHTALMEMYVKCRAIDEARHEFD 364

Query: 351 KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTW--------------- 391
           ++   DVV W+ MI GY+Q GR  E++ LF +M       + VT                
Sbjct: 365 RMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDEL 424

Query: 392 --------------------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFL 431
                               + +I  Y +   +  A  +F  M +++  V+WN++I G  
Sbjct: 425 GEQIGNYIESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRM-EQKVVVTWNSMIRGLA 483

Query: 432 QNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLF 491
            N F  DA+ ++  M  +G + +  T    L+AC H   +  G        K  +V+   
Sbjct: 484 LNGFAEDAIALYRKMVGDGIQPNEVTFVALLTACTHAGLVDKGIAFFEEMKKKQHVSPQV 543

Query: 492 VGNSLIT-MYAKCGRIQNAELLFKD--ADPVDVISWNSLIAG 530
              + I  +  K GR+  A     D   +P  VI W++L++ 
Sbjct: 544 EHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVI-WSTLLSA 584



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/403 (25%), Positives = 189/403 (46%), Gaps = 47/403 (11%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           VF Q   +    K+G ++ A+  F +M  K+ +  N +I+ Y+K+G V +AR+LF+ MP+
Sbjct: 209 VFVQTALVDFYAKNGDMDSALMAFKEMPVKDPIPMNCLITGYSKSGDVEEARRLFDSMPR 268

Query: 75  RNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKAREL 130
           R   SWNSMIA Y H  + +EA  LFD+M R    P+  +   + +   + G+L+  R  
Sbjct: 269 RTSASWNSMIACYAHGGEFREALTLFDQMLREGASPNAITITTVFSICAKTGDLDTGRRA 328

Query: 131 FDLLPNK--EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
              +  +  ++     A++  Y K    +EA+   D MP +++V+W++M++GY++NG  H
Sbjct: 329 RAWIREEDLQNVIVHTALMEMYVKCRAIDEARHEFDRMPRRDVVAWSTMIAGYSQNGRPH 388

Query: 189 LASKFFEAMEERDVVSWNLMLDGYV---------ELDDLDSAWKFFQKIPEQNVVSWVTM 239
            + + FE M+  +     + L G +         EL +    +   Q +P  + +    +
Sbjct: 389 ESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGNYIESQTLPLTSYLG-SAL 447

Query: 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNP 295
           +  Y + G +  AR +F++M  + VV WN+MI      G  E+A  L+ +M     + N 
Sbjct: 448 IDMYTKCGHVARARSVFNRMEQKVVVTWNSMIRGLALNGFAEDAIALYRKMVGDGIQPNE 507

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
           V++  ++        +D+     ++M                  K+   + Q+       
Sbjct: 508 VTFVALLTACTHAGLVDKGIAFFEEM-----------------KKKQHVSPQVEHCACIV 550

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAG 397
           D++C         + GR+ EA      M V  + V W+T+++ 
Sbjct: 551 DLLC---------KSGRLWEAYKFICDMEVEPNAVIWSTLLSA 584



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 130/325 (40%), Gaps = 64/325 (19%)

Query: 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484
           A +SG  +   H + +++   + + G       +   L +CA  AA   G Q H  A+  
Sbjct: 144 AFLSGLSKLSLHQEFIEVVSSLHRRGGAIPSGCIPLVLKSCAQSAASCQGSQTHCHALVR 203

Query: 485 GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNAT------ 538
           G + D+FV  +L+  YAK G + +A + FK+    D I  N LI GY+ +G+        
Sbjct: 204 GMLGDVFVQTALVDFYAKNGDMDSALMAFKEMPVKDPIPMNCLITGYSKSGDVEEARRLF 263

Query: 539 -------------------------EAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVD 573
                                    EA+ LF++M+ EG +P+ +T   V S C+  G +D
Sbjct: 264 DSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGASPNAITITTVFSICAKTGDLD 323

Query: 574 GGLK------------------LFECMTEVYAIEPL-----------VEHYACMIDLLSR 604
            G +                  L E   +  AI+             V  ++ MI   S+
Sbjct: 324 TGRRARAWIREEDLQNVIVHTALMEMYVKCRAIDEARHEFDRMPRRDVVAWSTMIAGYSQ 383

Query: 605 AGRLDEAFEMVKGMK---IKPNAGIWGTLLGACRMHQNIKLG-RIAVEKLSELEPQKTSC 660
            GR  E+ E+ + MK    KPN      +L AC    + +LG +I     S+  P  +  
Sbjct: 384 NGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGNYIESQTLPLTSYL 443

Query: 661 YALLSNMHAEAGRWDEVEKVRVSME 685
            + L +M+ + G       V   ME
Sbjct: 444 GSALIDMYTKCGHVARARSVFNRME 468



 Score = 45.4 bits (106), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 86/191 (45%), Gaps = 23/191 (12%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMS----QKNTVTYNSMISAYAKNGRVNDARKLFE 70
           V   N  I  L  +G  E+AI ++ +M     Q N VT+ ++++A    G V+     FE
Sbjct: 472 VVTWNSMIRGLALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTACTHAGLVDKGIAFFE 531

Query: 71  QMPQRNLVSWNSMIAGYLHNDKVKEARE------LFDKMFRPDLFSWALMITCYTRKGEL 124
           +M ++  VS        + +   K  R       + D    P+   W+ +++      ++
Sbjct: 532 EMKKKQHVSPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWSTLLSACRAHADV 591

Query: 125 EKAR----ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG 180
           E A+    +L  L PN  +++ +  +   YA  G + + +++ D M SKN+      LS 
Sbjct: 592 ELAKLAAGKLVALEPN--NSSIYVLLSNIYADAGLWGDVREIRDLMRSKNL----QKLSA 645

Query: 181 YT---KNGEMH 188
           Y+    +GE+H
Sbjct: 646 YSWIELDGEVH 656


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  325 bits (832), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 198/631 (31%), Positives = 318/631 (50%), Gaps = 64/631 (10%)

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           DT C N ++  YAK+G    A++L D MP +N VS+ +++ GY   GE   A + F  ++
Sbjct: 81  DTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQ 140

Query: 199 ----ERDVVSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSGYARNGRML 250
               E +      +L   V +D    A            ++N      ++  Y+  G + 
Sbjct: 141 REGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVC 200

Query: 251 EARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYV 306
            AR +FD +  ++ V W AM++ Y +    E A   F +M     + NP   T+ +   V
Sbjct: 201 HARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAV 260

Query: 307 RIAKL--------DEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV 358
            ++             + L D  P+       A++  Y +   +++A+ IF+ I   DV+
Sbjct: 261 CLSSALLGKGIHGCSVKTLYDTEPH----VGGALLDMYAKCGDIEDAHAIFEMIPHDDVI 316

Query: 359 CWNVMIKGYAQCGRMDEAINLFRQMVNKDIV----------------------------- 389
            W+ +I  YAQ  + ++A  +F +M+   +V                             
Sbjct: 317 LWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLA 376

Query: 390 ----------TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDA 439
                       N ++  YA+ R M+++++IF  + +  N VSWN +I G+ Q+ F  DA
Sbjct: 377 IKLGYESELFVGNALMDMYAKCRNMENSLEIFSSL-QDANEVSWNTIIVGYCQSGFAEDA 435

Query: 440 LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
           L +F  M      +   T +  L ACA+ ++++   QIH L  KS + ND  V NSLI  
Sbjct: 436 LSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDT 495

Query: 500 YAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTF 559
           YAKCG I++A  +F+     DV+SWNS+I+ YA++G AT A++LF+ M    +  + VTF
Sbjct: 496 YAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALELFDRMNKSDIKANDVTF 555

Query: 560 IGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMK 619
           + +LS C   GLV+ GL LF  M   + I+P +EHY C++ LL RAGRL +A + +  + 
Sbjct: 556 VSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGRAGRLTDALKFIGDIP 615

Query: 620 IKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEK 679
             P+  +W  LL +C +H+N+ LGR A EK+ ++EP   + Y LLSNM+A AG  DEV  
Sbjct: 616 STPSPMVWRALLSSCVVHKNVALGRYAAEKVLDIEPHDETTYVLLSNMYAAAGILDEVAL 675

Query: 680 VRVSMEGSGAQKQPGCSWIEVKNQIHTFLSG 710
            R SM   G +K+ G SW+E+K ++H F  G
Sbjct: 676 WRKSMRNVGVKKEAGLSWVEIKGEVHAFSVG 706



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 150/654 (22%), Positives = 281/654 (42%), Gaps = 107/654 (16%)

Query: 41  MSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF 100
           ++Q +T   N +++ YAK G +  AR+LF+ MP+RN VS+ +++ GY    + +EA ELF
Sbjct: 77  VAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYALRGEFEEALELF 136

Query: 101 DKMFRPD-------LFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKI 153
            ++ R         L +   ++      G           L +  +     A++  Y+  
Sbjct: 137 RRLQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLC 196

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYV 213
           G    A+ + D +  K+ V+W +M+S Y++N     A   F  M          +L   +
Sbjct: 197 GAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSAL 256

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWV--------TMLSGYARNGRMLEARRLFDQMPIRNVV 265
           +     S+    + I   +V +           +L  YA+ G + +A  +F+ +P  +V+
Sbjct: 257 KAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVI 316

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKL---DEARRLL 318
            W+ +I+ Y Q  Q E+A  +F+ M       N  S + ++     IA L   ++   L 
Sbjct: 317 LWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLA 376

Query: 319 DQMPYKN-IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAI 377
            ++ Y++ +    A++  Y + + M+ + +IF  +   + V WN +I GY Q G  ++A+
Sbjct: 377 IKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDAL 436

Query: 378 NLFRQM---------------------------------------VNKDIVTWNTMIAGY 398
           ++F +M                                        N D +  N++I  Y
Sbjct: 437 SVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTY 496

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           A+   + DA+K+FE + +  + VSWN++IS +  +    +AL++F  M +   KA+  T 
Sbjct: 497 AKCGFIRDALKVFESIVE-CDVVSWNSIISAYALHGRATNALELFDRMNKSDIKANDVTF 555

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVND-LFVGNSLITMYAKCGRIQNAELLFKDAD 517
              LS C                  +G VN  L++ NS++  +    RI+ +        
Sbjct: 556 VSLLSVCG----------------STGLVNQGLWLFNSMMMDH----RIKPS-------- 587

Query: 518 PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLK 577
              +  +  ++      G  T+A+K   ++      P P+ +  +LS+C    +V   + 
Sbjct: 588 ---MEHYTCIVRLLGRAGRLTDALKFIGDI---PSTPSPMVWRALLSSC----VVHKNVA 637

Query: 578 LFECMTE-VYAIEPLVE-HYACMIDLLSRAGRLDEAFEMVKGMK---IKPNAGI 626
           L     E V  IEP  E  Y  + ++ + AG LDE     K M+   +K  AG+
Sbjct: 638 LGRYAAEKVLDIEPHDETTYVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGL 691



 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 184/407 (45%), Gaps = 50/407 (12%)

Query: 242 GYARNGRMLEARRL-FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTT 300
           G AR GR + AR +    +   +    N ++  Y + G +  A RLF  MPERN VS+ T
Sbjct: 59  GDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVT 118

Query: 301 MIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC- 359
           ++ GY    + +EA  L  ++  +       +++  ++     +A  +    G H   C 
Sbjct: 119 LMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGL--ACGIHACACK 176

Query: 360 ---------WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKI 410
                       +I  Y+ CG +  A  +F  +V KD VTW  M++ Y+           
Sbjct: 177 LGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYS----------- 225

Query: 411 FEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAA 470
                                +N+    AL  F  M   G K +   L  AL A   L++
Sbjct: 226 ---------------------ENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSS 264

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
             LG+ IH  ++K+ Y  +  VG +L+ MYAKCG I++A  +F+     DVI W+ LI+ 
Sbjct: 265 ALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISR 324

Query: 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV-YAIE 589
           YA +    +A ++F  M+   V P+  +  GVL AC+++  ++ G ++     ++ Y  E
Sbjct: 325 YAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESE 384

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL-GACR 635
             V +   ++D+ ++   ++ + E+   ++   N   W T++ G C+
Sbjct: 385 LFVGN--ALMDMYAKCRNMENSLEIFSSLQ-DANEVSWNTIIVGYCQ 428



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 128/258 (49%), Gaps = 12/258 (4%)

Query: 365 KGYAQCGRMDEAINLFRQMVNK-DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW 423
           +G A+ GR   A  + R  V + D    N ++  YA++  +  A ++F+ M   RN VS+
Sbjct: 58  RGDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGM-PERNRVSF 116

Query: 424 NALISGF-LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482
             L+ G+ L+ EF  +AL++F  + +EG + +H  L   L     + A  L   IH  A 
Sbjct: 117 VTLMQGYALRGEFE-EALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACAC 175

Query: 483 KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIK 542
           K G+  + FVG +LI  Y+ CG + +A  +F      D ++W ++++ Y+ N     A+ 
Sbjct: 176 KLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALN 235

Query: 543 LFEEMVMEGVAPDPVTFIGVLSA--CSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMID 600
            F +M M G  P+P      L A  C    L+  G+      T +Y  EP V     ++D
Sbjct: 236 TFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKT-LYDTEPHVG--GALLD 292

Query: 601 LLSRAGRLDEA---FEMV 615
           + ++ G +++A   FEM+
Sbjct: 293 MYAKCGDIEDAHAIFEMI 310



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 86/387 (22%), Positives = 179/387 (46%), Gaps = 33/387 (8%)

Query: 26  GKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIA 85
            K G +E+A  IF  +   + + ++ +IS YA++ +   A ++F +M +  +V     ++
Sbjct: 295 AKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLS 354

Query: 86  GYLHNDKVKEARELFDKM--------FRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
           G L         EL +++        +  +LF    ++  Y +   +E + E+F  L + 
Sbjct: 355 GVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDA 414

Query: 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMHLASKF 193
            + + WN ++ GY + G   +A  +   M + ++    V+++S+L        +  A + 
Sbjct: 415 NEVS-WNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQI 473

Query: 194 FEAMEE----RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRM 249
              +E+     D +  N ++D Y +   +  A K F+ I E +VVSW +++S YA +GR 
Sbjct: 474 HSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRA 533

Query: 250 LEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTT 300
             A  LFD+M   ++    V + ++++     G + +   LF  M   + +      +T 
Sbjct: 534 TNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTC 593

Query: 301 MIDGYVRIAKLDEARRLLDQMP-YKNIAAQTAMISGYVQNKRMD----EANQIFDKIGTH 355
           ++    R  +L +A + +  +P   +     A++S  V +K +      A ++ D I  H
Sbjct: 594 IVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAEKVLD-IEPH 652

Query: 356 DVVCWNVMIKGYAQCGRMDEAINLFRQ 382
           D   + ++   YA  G +DE + L+R+
Sbjct: 653 DETTYVLLSNMYAAAGILDE-VALWRK 678



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 91/443 (20%), Positives = 199/443 (44%), Gaps = 54/443 (12%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL----------- 77
           G V  A  +F  +  K+ VT+ +M+S Y++N     A   F +M                
Sbjct: 197 GAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSAL 256

Query: 78  ---VSWNSMIAGY-LHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDL 133
              V  +S + G  +H   VK    L+D    P +     ++  Y + G++E A  +F++
Sbjct: 257 KAAVCLSSALLGKGIHGCSVK---TLYDT--EPHV--GGALLDMYAKCGDIEDAHAIFEM 309

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG---------YTKN 184
           +P+ +D   W+ +++ YA+     +A ++   M    +V     LSG         + + 
Sbjct: 310 IPH-DDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLEL 368

Query: 185 GEM--HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG 242
           GE   +LA K      E ++   N ++D Y +  +++++ + F  + + N VSW T++ G
Sbjct: 369 GEQIHNLAIKL---GYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVG 425

Query: 243 YARNGRMLEARRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARL--FIEMPERN-- 294
           Y ++G   +A  +F +M     +   V +++++ A      I+ A ++   IE    N  
Sbjct: 426 YCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNND 485

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354
            +   ++ID Y +   + +A ++ + +   ++ +  ++IS Y  + R   A ++FD++  
Sbjct: 486 TIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALELFDRMNK 545

Query: 355 HDV----VCWNVMIKGYAQCGRMDEAINLFRQM-----VNKDIVTWNTMIAGYAQIRQMD 405
            D+    V +  ++      G +++ + LF  M     +   +  +  ++    +  ++ 
Sbjct: 546 SDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGRAGRLT 605

Query: 406 DAVKIFEEMGKRRNTVSWNALIS 428
           DA+K   ++    + + W AL+S
Sbjct: 606 DALKFIGDIPSTPSPMVWRALLS 628



 Score = 69.7 bits (169), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 115/237 (48%), Gaps = 29/237 (12%)

Query: 26  GKSGRVEEAIKIFSQMSQK----NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
             +  ++ A++I S + +     +T+  NS+I  YAK G + DA K+FE + + ++VSWN
Sbjct: 462 ANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWN 521

Query: 82  SMIAGYLHNDKVKEARELFDKMFRPDL----FSWALMITCYTRKGELEKARELFDLL--- 134
           S+I+ Y  + +   A ELFD+M + D+     ++  +++     G + +   LF+ +   
Sbjct: 522 SIISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMD 581

Query: 135 ----PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK-NIVSWNSMLSGYTKNGEMHL 189
               P+ E   C   +V    + G   +A K +  +PS  + + W ++LS    +  + L
Sbjct: 582 HRIKPSMEHYTC---IVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVAL 638

Query: 190 ----ASKFFEAMEERDVVSWNLMLDGYVELDDLD--SAWKFFQK---IPEQNVVSWV 237
               A K  + +E  D  ++ L+ + Y     LD  + W+   +   + ++  +SWV
Sbjct: 639 GRYAAEKVLD-IEPHDETTYVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWV 694



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 15/163 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL- 77
           N  I    K G + +A+K+F  + + + V++NS+ISAYA +GR  +A +LF++M + ++ 
Sbjct: 490 NSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALELFDRMNKSDIK 549

Query: 78  ---VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARE 129
              V++ S+++       V +   LF+ M      +P +  +  ++    R G L  A +
Sbjct: 550 ANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGRAGRLTDALK 609

Query: 130 LFDLLPNKEDTACWNAMVAGY-----AKIGNYNEAKKLLDAMP 167
               +P+      W A+++         +G Y  A+K+LD  P
Sbjct: 610 FIGDIPSTPSPMVWRALLSSCVVHKNVALGRY-AAEKVLDIEP 651


>gi|147798551|emb|CAN72187.1| hypothetical protein VITISV_012899 [Vitis vinifera]
          Length = 690

 Score =  325 bits (832), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 186/530 (35%), Positives = 298/530 (56%), Gaps = 23/530 (4%)

Query: 205 WNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRMLEARR---LFD 257
           WN ++  +   +D   A+  F  + E  V     S+  +L   +R G + E  +   L  
Sbjct: 146 WNAIIKSFSHGEDPXEAFXIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLLG 205

Query: 258 QMPI-RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
            M I  +V   N ++  Y++ G +  A +LF  M  R+ VS+ +MIDGYV+   +  AR 
Sbjct: 206 XMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMXRDSVSFNSMIDGYVKHGMVKSARE 265

Query: 317 LLDQMPY--KNIAAQTAMISGYVQNKR-MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRM 373
           L D MP   KN+ +  +MISGY +++  +  A ++F+++   D++ WN MI G  +CG+M
Sbjct: 266 LFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVKCGKM 325

Query: 374 DEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433
           + A +LF  M  +D+V+W  M+ GYA++ ++D A  +F+EM +R + +S NA+++G++QN
Sbjct: 326 ENAHHLFNXMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPER-DVISCNAMMAGYVQN 384

Query: 434 EFHLDALKIFV-LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
              ++AL  F  +++ +     ++TL   LSA A L     G  +H     +G+     +
Sbjct: 385 GXLMEALXFFHDMLSXKELFPXNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSEKL 444

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
           G +LI MYAKCG I NA           +  WN++J G AI+G    A +LF EM    V
Sbjct: 445 GXALIDMYAKCGSIDNAL----------IDHWNAIJXGLAIHGLGEVAFELFMEMEKLFV 494

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
            PB +TFIGVL+AC+H GLV  GL  F  M  V+ +EP ++HY CM+D+L RAG ++E  
Sbjct: 495 KPBDITFIGVLNACNHAGLVKEGLMXFXLMRXVHKVEPKLQHYGCMVDILGRAGHVEEXK 554

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672
           + V+ M I+PN  +W TLL ACR H+N  +G    + L  ++    S Y LLSN++A  G
Sbjct: 555 KFVEKMPIEPNDVVWRTLLSACRNHENFTIGEPVAKHLISVDSYNPSSYVLLSNIYAXFG 614

Query: 673 RWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICN 722
            W++V ++R+ M+    +K PGCS IE++  +H F   D    +   I N
Sbjct: 615 MWNDVYRIRMMMKQRDLKKIPGCSQIELEGNVHEFFVRDKSHPQRLPIVN 664



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 126/426 (29%), Positives = 197/426 (46%), Gaps = 93/426 (21%)

Query: 38  FSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEAR 97
           FS  S K  V +   +      GR        +   Q N   WN++I  + H +   EA 
Sbjct: 112 FSSSSHKPLVEFARYLFMSRHFGR--------KHRKQDNPFLWNAIIKSFSHGEDPXEAF 163

Query: 98  ELFDKMFRP----DLFSWAL-----------------------------------MITCY 118
            +F+ M       D FS++L                                   ++  Y
Sbjct: 164 XIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLLGXMEIGSDVFLQNCLMCLY 223

Query: 119 TRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP--SKNIVSWNS 176
            R G L  AR+LFD +  + D+  +N+M+ GY K G    A++L D MP   KN++SWNS
Sbjct: 224 LRCGCLGIARQLFDRMMXR-DSVSFNSMIDGYVKHGMVKSARELFDVMPMEQKNLISWNS 282

Query: 177 MLSGYTKNGE-MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
           M+SGY ++ E + +A + FE M +RD++SWN M+DG V+   +++A   F  +P+++VVS
Sbjct: 283 MISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVKCGKMENAHHLFNXMPKRDVVS 342

Query: 236 WVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM---PE 292
           W  M+ GYA+ G +  AR LFD+MP R+V++ NAM+A YVQ G + EA   F +M    E
Sbjct: 343 WANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGXLMEALXFFHDMLSXKE 402

Query: 293 RNPVSWTTMI--DGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD 350
             P + T +I      ++   DE                   +  Y++    D    + +
Sbjct: 403 LFPXNATLLITLSAIAQLGHFDEG----------------VALHCYIE----DNGFSLSE 442

Query: 351 KIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKI 410
           K+G         +I  YA+CG +D A+          I  WN +J G A     + A ++
Sbjct: 443 KLGX-------ALIDMYAKCGSIDNAL----------IDHWNAIJXGLAIHGLGEVAFEL 485

Query: 411 FEEMGK 416
           F EM K
Sbjct: 486 FMEMEK 491



 Score =  155 bits (392), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 103/292 (35%), Positives = 157/292 (53%), Gaps = 25/292 (8%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS VF QN  +    + G +  A ++F +M  +++V++NSMI  Y K+G V  AR+LF+ 
Sbjct: 210 GSDVFLQNCLMCLYLRCGCLGIARQLFDRMMXRDSVSFNSMIDGYVKHGMVKSARELFDV 269

Query: 72  MP--QRNLVSWNSMIAGYLHNDK-VKEARELFDKMFRPDLFSWALMITCYTRKGELEKAR 128
           MP  Q+NL+SWNSMI+GY  +++ ++ A ELF++M + DL SW  MI    + G++E A 
Sbjct: 270 MPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVKCGKMENAH 329

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH 188
            LF+ +P K D   W  MV GYAK+G  + A+ L D MP ++++S N+M++GY +NG + 
Sbjct: 330 HLFNXMP-KRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGXLM 388

Query: 189 LASKFFEAM-EERDVVSWN----LMLDGYVELDDLDSAWKFFQKIPEQNVVSW-----VT 238
            A  FF  M   +++   N    + L    +L   D        I E N  S        
Sbjct: 389 EALXFFHDMLSXKELFPXNATLLITLSAIAQLGHFDEGVALHCYI-EDNGFSLSEKLGXA 447

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
           ++  YA+ G +  A  L D         WNA+J      G  E A  LF+EM
Sbjct: 448 LIDMYAKCGSIDNA--LIDH--------WNAIJXGLAIHGLGEVAFELFMEM 489



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 154/347 (44%), Gaps = 52/347 (14%)

Query: 29  GRVEEAIKI----FSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMI 84
            R EE +++    F +M +++ +++NSMI    K G++ +A  LF  MP+R++VSW +M+
Sbjct: 288 ARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVKCGKMENAHHLFNXMPKRDVVSWANMV 347

Query: 85  AGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF-DLLPNKE---DT 140
            GY    ++  AR LFD+M   D+ S   M+  Y + G L +A   F D+L  KE     
Sbjct: 348 DGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQNGXLMEALXFFHDMLSXKELFPXN 407

Query: 141 ACWNAMVAGYAKIGNYNE-------------------AKKLLD------AMPSKNIVSWN 175
           A     ++  A++G+++E                      L+D      ++ +  I  WN
Sbjct: 408 ATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSEKLGXALIDMYAKCGSIDNALIDHWN 467

Query: 176 SMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSA------------WK 223
           ++J G   +G   +A + F  ME+  V   ++   G   L+  + A             +
Sbjct: 468 AIJXGLAIHGLGEVAFELFMEMEKLFVKPBDITFIGV--LNACNHAGLVKEGLMXFXLMR 525

Query: 224 FFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI-- 280
              K+ E  +  +  M+    R G + E ++  ++MPI  N V W  +++A         
Sbjct: 526 XVHKV-EPKLQHYGCMVDILGRAGHVEEXKKFVEKMPIEPNDVVWRTLLSACRNHENFTI 584

Query: 281 -EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
            E  A+  I +   NP S+  + + Y      ++  R+   M  +++
Sbjct: 585 GEPVAKHLISVDSYNPSSYVLLSNIYAXFGMWNDVYRIRMMMKQRDL 631



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 117/257 (45%), Gaps = 23/257 (8%)

Query: 416 KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
           K+ N   WNA+I  F   E   +A  IF LM + G   D  + +  L AC+ L  ++ G 
Sbjct: 139 KQDNPFLWNAIIKSFSHGEDPXEAFXIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGM 198

Query: 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAING 535
           QIH L       +D+F+ N L+ +Y +CG +  A  LF      D +S+NS+I GY  +G
Sbjct: 199 QIHGLLGXMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMXRDSVSFNSMIDGYVKHG 258

Query: 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLK----LFECMTEVYAIEPL 591
               A +LF+ M ME         I   S  S     + GL+    LFE M +   I   
Sbjct: 259 MVKSARELFDVMPME-----QKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLIS-- 311

Query: 592 VEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK-L 650
              +  MID   + G+++ A  +   M  K +   W  ++         KLG I + + L
Sbjct: 312 ---WNSMIDGCVKCGKMENAHHLFNXMP-KRDVVSWANMVDG-----YAKLGEIDIARGL 362

Query: 651 SELEPQK--TSCYALLS 665
            +  P++   SC A+++
Sbjct: 363 FDEMPERDVISCNAMMA 379


>gi|15233292|ref|NP_188854.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273371|sp|Q9LIE7.1|PP246_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22150, chloroplastic; Flags: Precursor
 gi|11994734|dbj|BAB03063.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|110739449|dbj|BAF01634.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643073|gb|AEE76594.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 820

 Score =  325 bits (832), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 221/771 (28%), Positives = 375/771 (48%), Gaps = 92/771 (11%)

Query: 46  TVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR 105
           T +  S +S   ++G    AR+LF+ +P+   V WN++I G++ N+   EA   + +M +
Sbjct: 39  TPSIRSRLSKICQDGNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKK 98

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPNK------------EDTACWNAMVAGYAKI 153
              F+       YT    L+   E  +L   K                  N+++  Y   
Sbjct: 99  TAPFTNC---DAYTYSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSC 155

Query: 154 GN------YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----V 203
            N      Y+  +K+ D M  KN+V+WN+++S Y K G    A + F  M   +V    V
Sbjct: 156 LNAPDCFEYDVVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPV 215

Query: 204 SWNLMLDGYVELDDLDSAWKFF--------QKIPEQNVVSWVTMLSGYARNGRMLEARRL 255
           S+  +         +  A  F+        + + +  VVS  + +S YA  G +  +RR+
Sbjct: 216 SFVNVFPAVSISRSIKKANVFYGLMLKLGDEYVKDLFVVS--SAISMYAELGDIESSRRV 273

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER-----NPVSWTTMIDGYVRIAK 310
           FD    RN+  WN MI  YVQ   + E+  LF+E         + V++         + +
Sbjct: 274 FDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQQ 333

Query: 311 LDEARRL-------LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVM 363
           ++  R+          ++P   I    +++  Y +   + ++  +F  +   DVV WN M
Sbjct: 334 VELGRQFHGFVSKNFRELP---IVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTM 390

Query: 364 IKGYAQCGRMDEAINLFRQMVNK----DIVTWNTMIAGYAQIRQMDD------------- 406
           I  + Q G  DE + L  +M  +    D +T   +++  + +R  +              
Sbjct: 391 ISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGI 450

Query: 407 ---------------------AVKIFEEMG-KRRNTVSWNALISGFLQNEFHLDALKIFV 444
                                + K+FE  G   R+  +WN++ISG+ QN        +F 
Sbjct: 451 QFEGMNSYLIDMYSKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFR 510

Query: 445 LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG 504
            M ++  + +  T+A  L AC+ + ++ LG+Q+H  +I+     ++FV ++L+ MY+K G
Sbjct: 511 KMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAG 570

Query: 505 RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLS 564
            I+ AE +F      + +++ ++I GY  +G    AI LF  M   G+ PD +TF+ VLS
Sbjct: 571 AIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQESGIKPDAITFVAVLS 630

Query: 565 ACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPN- 623
           ACS+ GL+D GLK+FE M EVY I+P  EHY C+ D+L R GR++EA+E VKG+  + N 
Sbjct: 631 ACSYSGLIDEGLKIFEEMREVYNIQPSSEHYCCITDMLGRVGRVNEAYEFVKGLGEEGNI 690

Query: 624 AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKT-SCY-ALLSNMHAEAGRWDEVEKVR 681
           A +WG+LLG+C++H  ++L     E+L++ +  K  S Y  LLSNM+AE  +W  V+KVR
Sbjct: 691 AELWGSLLGSCKLHGELELAETVSERLAKFDKGKNFSGYEVLLSNMYAEEQKWKSVDKVR 750

Query: 682 VSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
             M   G +K+ G S IE+   ++ F+S D +   ++EI + +  LA  +R
Sbjct: 751 RGMREKGLKKEVGRSGIEIAGYVNCFVSRDQEHPHSSEIYDVIDGLAKDMR 801



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 106/499 (21%), Positives = 210/499 (42%), Gaps = 88/499 (17%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLF-EQMP 73
           +F  +  I+   + G +E + ++F    ++N   +N+MI  Y +N  + ++ +LF E + 
Sbjct: 251 LFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIG 310

Query: 74  QRNLVS-------WNSMIAGYLHNDKVKEARELFDKMFR--PDLFSWALMITCYTRKGEL 124
            + +VS         S ++     +  ++      K FR  P +   +LM+  Y+R G +
Sbjct: 311 SKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKNFRELPIVIVNSLMVM-YSRCGSV 369

Query: 125 EKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSMLSG 180
            K+  +F L   + D   WN M++ + + G  +E   L+  M  +    + ++  ++LS 
Sbjct: 370 HKSFGVF-LSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSA 428

Query: 181 ----------------------------------YTKNGEMHLASKFFE--AMEERDVVS 204
                                             Y+K+G + ++ K FE     ERD  +
Sbjct: 429 ASNLRNKEIGKQTHAFLIRQGIQFEGMNSYLIDMYSKSGLIRISQKLFEGSGYAERDQAT 488

Query: 205 WNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYARNGRM--------LEA 252
           WN M+ GY +    +  +  F+K+ EQN+    V+  ++L   ++ G +           
Sbjct: 489 WNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSI 548

Query: 253 RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLD 312
           R+  DQ    NV   +A++  Y + G I+ A  +F +  ERN V++TTMI GY +    +
Sbjct: 549 RQYLDQ----NVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGE 604

Query: 313 EARRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKI--------GTHDVVCW 360
            A  L   M    I        A++S    +  +DE  +IF+++         +    C 
Sbjct: 605 RAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEGLKIFEEMREVYNIQPSSEHYCCI 664

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVT--WNTMIAGYAQIRQMDDAVKIFEEMG--- 415
             M+    + GR++EA    + +  +  +   W +++       +++ A  + E +    
Sbjct: 665 TDML---GRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCKLHGELELAETVSERLAKFD 721

Query: 416 KRRNTVSWNALISGFLQNE 434
           K +N   +  L+S     E
Sbjct: 722 KGKNFSGYEVLLSNMYAEE 740


>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Glycine max]
          Length = 521

 Score =  325 bits (832), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 176/473 (37%), Positives = 267/473 (56%), Gaps = 28/473 (5%)

Query: 264 VVAWNAMIAAYVQRGQIEEAARLFIEMPE----RNPVSWTTMIDGYVRIAKLDEARRLLD 319
           +V+W   IA Y + G + +AA  F++M E     N +++ T++                 
Sbjct: 56  IVSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACA------------- 102

Query: 320 QMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
             P ++  +    I  +V+   +D           +DV+    +I  YA+CGR++ A   
Sbjct: 103 HYPSRSSISFGTAIHAHVRKLGLD----------INDVMVGTALIDMYAKCGRVESARLA 152

Query: 380 FRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDA 439
           F QM  +++V+WNTMI GY +  + +DA+++F+ +   +N +SW ALI GF++ ++H +A
Sbjct: 153 FDQMGVRNLVSWNTMIDGYMRNGKFEDALQVFDGL-PVKNAISWTALIGGFVKKDYHEEA 211

Query: 440 LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITM 499
           L+ F  M   G   D+ T+   ++ACA+L  L LG  +H L +   + N++ V NSLI M
Sbjct: 212 LECFREMQLSGVAPDYVTVIAVIAACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDM 271

Query: 500 YAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTF 559
           Y++CG I  A  +F       ++SWNS+I G+A+NG A EA+  F  M  EG  PD V++
Sbjct: 272 YSRCGCIDLARQVFDRMPQRTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSY 331

Query: 560 IGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMK 619
            G L ACSH GL+  GL++FE M  V  I P +EHY C++DL SRAGRL+EA  ++K M 
Sbjct: 332 TGALMACSHAGLIGEGLRIFEHMKRVRRILPRIEHYGCLVDLYSRAGRLEEALNVLKNMP 391

Query: 620 IKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEK 679
           +KPN  I G+LL ACR   NI L    +  L EL+    S Y LLSN++A  G+WD   K
Sbjct: 392 MKPNEVILGSLLAACRTQGNIGLAENVMNYLIELDSGGDSNYVLLSNIYAAVGKWDGANK 451

Query: 680 VRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           VR  M+  G QK+PG S IE+ + IH F+SGD        I   L+ L+ +++
Sbjct: 452 VRRRMKERGIQKKPGFSSIEIDSSIHKFVSGDKSHEEKDHIYAALEFLSFELQ 504



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 158/333 (47%), Gaps = 20/333 (6%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           I    K GRVE A   F QM  +N V++N+MI  Y +NG+  DA ++F+ +P +N +SW 
Sbjct: 137 IDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNGKFEDALQVFDGLPVKNAISWT 196

Query: 82  SMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137
           ++I G++  D  +EA E F +M      PD  +   +I      G L     +  L+  +
Sbjct: 197 ALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIAACANLGTLGLGLWVHRLVMTQ 256

Query: 138 E---DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF 194
           +   +    N+++  Y++ G  + A+++ D MP + +VSWNS++ G+  NG    A  +F
Sbjct: 257 DFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLVSWNSIIVGFAVNGLADEALSYF 316

Query: 195 EAMEER----DVVSWNLMLDGYVELDDLDSAWKFFQKIPE-----QNVVSWVTMLSGYAR 245
            +M+E     D VS+   L        +    + F+ +         +  +  ++  Y+R
Sbjct: 317 NSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRIFEHMKRVRRILPRIEHYGCLVDLYSR 376

Query: 246 NGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTTM 301
            GR+ EA  +   MP++ N V   +++AA   +G I   E      IE+      ++  +
Sbjct: 377 AGRLEEALNVLKNMPMKPNEVILGSLLAACRTQGNIGLAENVMNYLIELDSGGDSNYVLL 436

Query: 302 IDGYVRIAKLDEARRLLDQMPYKNIAAQTAMIS 334
            + Y  + K D A ++  +M  + I  +    S
Sbjct: 437 SNIYAAVGKWDGANKVRRRMKERGIQKKPGFSS 469



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 175/390 (44%), Gaps = 58/390 (14%)

Query: 171 IVSWNSMLSGYTKNGEM-HLASKFF---EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
           IVSW + ++ Y K+G +   ASKF    EA  E + +++  +L          S+  F  
Sbjct: 56  IVSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPS-RSSISFGT 114

Query: 227 KIPEQ---------NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR 277
            I            +V+    ++  YA+ GR+  AR  FDQM +RN+V+WN MI  Y++ 
Sbjct: 115 AIHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRN 174

Query: 278 GQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQ----TAMI 333
           G+ E+A ++F  +P +N +SWT +I G+V+    +EA     +M    +A       A+I
Sbjct: 175 GKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVI 234

Query: 334 SGYVQNKRMDEANQIFDKIGTHD----VVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIV 389
           +       +     +   + T D    V   N +I  Y++CG +D A  +F +M  + +V
Sbjct: 235 AACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLV 294

Query: 390 TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
           +WN++I G+A     D+A+  F                                  M +E
Sbjct: 295 SWNSIIVGFAVNGLADEALSYFNS--------------------------------MQEE 322

Query: 450 GKKADHSTLACALSACAHLAALQLGRQI-HHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508
           G K D  +   AL AC+H   +  G +I  H+      +  +     L+ +Y++ GR++ 
Sbjct: 323 GFKPDGVSYTGALMACSHAGLIGEGLRIFEHMKRVRRILPRIEHYGCLVDLYSRAGRLEE 382

Query: 509 AELLFKDAD--PVDVISWNSLIAGYAINGN 536
           A  + K+    P +VI   SL+A     GN
Sbjct: 383 ALNVLKNMPMKPNEVI-LGSLLAACRTQGN 411



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 156/338 (46%), Gaps = 28/338 (8%)

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSW-ALMITC--YTRKGELEKARE 129
           +VSW + IA Y  +  + +A   F +M      P+  ++  L+  C  Y  +  +     
Sbjct: 56  IVSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFGTA 115

Query: 130 LF----DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
           +      L  +  D     A++  YAK G    A+   D M  +N+VSWN+M+ GY +NG
Sbjct: 116 IHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNG 175

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLS 241
           +   A + F+ +  ++ +SW  ++ G+V+ D  + A + F+++    V    V+ + +++
Sbjct: 176 KFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIA 235

Query: 242 GYARNGRM---LEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS 297
             A  G +   L   RL      R NV   N++I  Y + G I+ A ++F  MP+R  VS
Sbjct: 236 ACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLVS 295

Query: 298 WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYV----QNKRMDEANQIFDKIG 353
           W ++I G+      DEA    + M  +         +G +        + E  +IF+ + 
Sbjct: 296 WNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRIFEHMK 355

Query: 354 -----THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
                   +  +  ++  Y++ GR++EA+N+ + M  K
Sbjct: 356 RVRRILPRIEHYGCLVDLYSRAGRLEEALNVLKNMPMK 393


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  325 bits (832), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 213/635 (33%), Positives = 336/635 (52%), Gaps = 56/635 (8%)

Query: 108 LFSWALMITCYTRKGE---LEKARELFDLL--PNKEDTACWNAMVAGYAKIGNYNEAKKL 162
           +FS + +I+ ++  G    L+ +R LF  +  PN      WN M+ GY++  N  EA  L
Sbjct: 41  IFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPN---LFMWNTMIRGYSRSDNPREAIVL 97

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAW 222
             +M +K I   N+    +  N    L+S     +E    V  +++  G+          
Sbjct: 98  YMSMIAKGIAPPNNFTFPFLLNSCARLSS-----LEPGHEVHSHIIKHGF---------- 142

Query: 223 KFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEE 282
                  E ++     ++  Y+  G +  AR LFD+  +R++V++N MI  Y +  Q E 
Sbjct: 143 -------ESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPES 195

Query: 283 AARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRM 342
           A  LF EM          + D +  +A       L +    K I AQ        +N R 
Sbjct: 196 ALCLFGEMQNSG-----ILPDEFTFVALFSVCSVLNEPNVGKQIHAQV------YKNLRS 244

Query: 343 DEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAGYAQI 401
            ++N          ++  + ++  YA+CG ++ A  +F  M  +K    W++M+ GYA+ 
Sbjct: 245 IDSN----------ILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARC 294

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
            +++ A K+F  M   R+ +SW A+ISG+ Q     +AL++F  M   G K D  TL   
Sbjct: 295 GEINVARKLFNHM-HERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAV 353

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVN-DLFVGNSLITMYAKCGRIQNAELLFKDA--DP 518
           LSACA L A  LG++++H  I++G  N +  +  +++ MYAKCG I +A  +F+    + 
Sbjct: 354 LSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNM 413

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
                +NS+IAG A +G    AI +F E++  G+ PD VTF+GVL AC H GL++ G KL
Sbjct: 414 KTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKL 473

Query: 579 FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQ 638
           FE M   Y I+P +EHY CM+DLL R G L+EA+++V+ M  + N+ IW  LL ACR H 
Sbjct: 474 FESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHG 533

Query: 639 NIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWI 698
           N+K+G IA +KL E+E Q  + Y LLSN+ A+A +W+E  +VR  ME  G +K PG S+I
Sbjct: 534 NVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYI 593

Query: 699 EVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           E+   IH F++ D    +  EI   LK +A ++++
Sbjct: 594 ELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKS 628



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/429 (25%), Positives = 190/429 (44%), Gaps = 65/429 (15%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----- 105
           S  S       ++ +R LF Q+   NL  WN+MI GY  +D  +EA  L+  M       
Sbjct: 49  SFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAP 108

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL 162
           P+ F++  ++    R   LE   E+   +     + D    NA++  Y+  GN N A+ L
Sbjct: 109 PNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTL 168

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV-------------------- 202
            D    +++VS+N+M+ GY +  +   A   F  M+   +                    
Sbjct: 169 FDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEP 228

Query: 203 ----------------VSWNLML-----DGYVELDDLDSAWKFFQKI-PEQNVVSWVTML 240
                           +  N++L     D Y +   ++ A + F  +   ++  +W +M+
Sbjct: 229 NVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMV 288

Query: 241 SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPV 296
            GYAR G +  AR+LF+ M  R+V++W AMI+ Y Q GQ  EA  LF EM     + + V
Sbjct: 289 CGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEV 348

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG-----YVQNKRMDEANQIFDK 351
           +   ++    R+   D  +RL  Q     +  Q  +++      Y +   +D A +IF +
Sbjct: 349 TLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRR 408

Query: 352 IGTH--DVVCWNVMIKGYAQCGRMDEAINLFRQMVNK----DIVTWNTMIAGYAQIRQMD 405
           +G +      +N MI G AQ G  + AI +FR++++     D VT+  ++        ++
Sbjct: 409 VGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIE 468

Query: 406 DAVKIFEEM 414
           +  K+FE M
Sbjct: 469 EGKKLFESM 477



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 99/440 (22%), Positives = 189/440 (42%), Gaps = 85/440 (19%)

Query: 14  YVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP 73
           ++ N   +++ L     V     I     + +    N++I  Y+  G +N AR LF++  
Sbjct: 116 FLLNSCARLSSLEPGHEVHS--HIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESL 173

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSW-ALMITC----------- 117
            R+LVS+N+MI GY   ++ + A  LF +M      PD F++ AL   C           
Sbjct: 174 VRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQ 233

Query: 118 -------------------------YTRKGELEKARELFDLLPNKEDTACWNAMVAGYAK 152
                                    Y + G +  A  +F  +   +  A W++MV GYA+
Sbjct: 234 IHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYAR 293

Query: 153 IGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLM 208
            G  N A+KL + M  ++++SW +M+SGY++ G+   A + F+ ME    + D V+   +
Sbjct: 294 CGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAV 353

Query: 209 LDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG-----YARNGRMLEARRLFDQMP--I 261
           L     L   D   + + +  E  V +  T+L+      YA+ G +  A  +F ++   +
Sbjct: 354 LSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNM 413

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEARRL 317
           +    +N+MIA   Q G  E A  +F E+     + + V++  ++        ++E ++L
Sbjct: 414 KTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKL 473

Query: 318 LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAI 377
            +           +M + Y    +M+    + D +G +               G ++EA 
Sbjct: 474 FE-----------SMFNAYGIKPQMEHYGCMVDLLGRY---------------GCLEEAY 507

Query: 378 NLFRQM-VNKDIVTWNTMIA 396
           +L ++M    + V W  +++
Sbjct: 508 DLVQKMPFEANSVIWRALLS 527



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 79/157 (50%), Gaps = 16/157 (10%)

Query: 15  VFNQNKKIT-----QLGKSGRVEEAIKIFSQMSQ--KNTVTYNSMISAYAKNGRVNDARK 67
           VFNQN  +T        K G ++ A++IF ++ +  K    +NSMI+  A++G    A  
Sbjct: 378 VFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAIT 437

Query: 68  LFEQMPQRNL----VSWNSMIAGYLHNDKVKEARELFDKMF-----RPDLFSWALMITCY 118
           +F ++    L    V++  ++    H+  ++E ++LF+ MF     +P +  +  M+   
Sbjct: 438 VFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLL 497

Query: 119 TRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGN 155
            R G LE+A +L   +P + ++  W A+++     GN
Sbjct: 498 GRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGN 534


>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
 gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
          Length = 869

 Score =  324 bits (831), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 200/657 (30%), Positives = 340/657 (51%), Gaps = 69/657 (10%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----E 199
           NAM++   + G    A ++   MP +++ SWN M+ GY K G +  A   +  M      
Sbjct: 133 NAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVR 192

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKI----------PEQNVVSWVTMLSGYARNGRM 249
            DV ++  +L     + D    W+  +++           E +V++   +++ YA+ G +
Sbjct: 193 PDVYTFPCVLRSCGGVPD----WRMGREVHAHVLRFGFAEEVDVLN--ALMTMYAKCGDV 246

Query: 250 LEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM------PERNPVSWTTMID 303
           + AR++FD M + + ++WNAMIA + + G+      LF+ M      P    ++  T+  
Sbjct: 247 VAARKVFDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVAS 306

Query: 304 GYVR-IAKLDEARRLLDQMPY-KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWN 361
           G +  I    E   L  +  +  ++A   ++I  Y     M +A  +F ++ T D + W 
Sbjct: 307 GLLSDITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWT 366

Query: 362 VMIKGYAQCGRMDEAINLFRQM----VNKD------------------------------ 387
            MI GY + G  D+A+ ++  M    V+ D                              
Sbjct: 367 AMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESK 426

Query: 388 -----IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI 442
                +V  N ++  YA+ +++D A+++F+ M   ++ VSW+++I+GF  N  + +AL  
Sbjct: 427 GFMSYVVVTNALLEMYAKSKRIDKAIEVFKCM-PEKDVVSWSSMIAGFCFNHRNFEALYY 485

Query: 443 FVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
           F  M  +  K +  T   AL+ACA   AL+ G++IH   ++ G   + ++ N+LI +Y K
Sbjct: 486 FRHMLAD-VKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIAYEGYLPNALIDLYVK 544

Query: 503 CGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV 562
           CG+   A   F      DV+SWN +IAG+  +GN   A+  F +MV  G  PD VTF+ +
Sbjct: 545 CGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGNGETALSFFNQMVKIGECPDEVTFVAL 604

Query: 563 LSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKP 622
           L ACS  G+V  G +LF  MT+ Y+I P ++HYACM+DLLSR G+L EA+  +  M I P
Sbjct: 605 LCACSRGGMVSEGWELFHSMTDKYSIVPNLKHYACMVDLLSRVGQLTEAYNFINEMPITP 664

Query: 623 NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRV 682
           +A +WG LL  CR+H++++LG +A + + ELEP     + LL +++A+AG WD++ +VR 
Sbjct: 665 DAAVWGALLNGCRIHRHVELGELAAKYVLELEPNDAGYHVLLCDLYADAGIWDKLARVRK 724

Query: 683 SMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNTPLAVI 739
           +M   G     GCSW+EVK  +H FL+ D    +  EI   L+ +  +++ +  A +
Sbjct: 725 TMREKGLDHDSGCSWVEVKGVVHAFLTDDESHPQIREINTVLEGIYERMKASGCAPV 781



 Score =  155 bits (392), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 142/556 (25%), Positives = 254/556 (45%), Gaps = 80/556 (14%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----R 105
           N+M+S   + G    A ++F +MP+R++ SWN M+ GY     ++EA +L+ +M     R
Sbjct: 133 NAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVR 192

Query: 106 PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKL 162
           PD++++  ++       +    RE+   +      E+    NA++  YAK G+   A+K+
Sbjct: 193 PDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKV 252

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE-----LDD 217
            D+M   + +SWN+M++G+ +NGE +   + F  M + D V  NLM    V      L D
Sbjct: 253 FDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQ-DEVQPNLMTITSVTVASGLLSD 311

Query: 218 LDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAA 273
           +  A +      ++   + V    +++  YA  G M +AR +F +M  R+ ++W AMI+ 
Sbjct: 312 ITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISG 371

Query: 274 YVQRGQIEEAARLFIEMPERNPVSWTTM--------------IDGYVRIAKLDEARRLLD 319
           Y + G  ++A  ++  M E N VS   +              +D  V++ +L E++  + 
Sbjct: 372 YEKNGFPDKALEVYALM-EVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMS 430

Query: 320 QMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
            +   N     A++  Y ++KR+D+A ++F  +   DVV W+ MI G+    R  EA+  
Sbjct: 431 YVVVTN-----ALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYY 485

Query: 380 FRQM---VNKDIVTW-----------------------------------NTMIAGYAQI 401
           FR M   V  + VT+                                   N +I  Y + 
Sbjct: 486 FRHMLADVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIAYEGYLPNALIDLYVKC 545

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
            Q   A   F   G  ++ VSWN +I+GF+ +     AL  F  M + G+  D  T    
Sbjct: 546 GQTGYAWAQFCAHGA-KDVVSWNIMIAGFVAHGNGETALSFFNQMVKIGECPDEVTFVAL 604

Query: 462 LSACAHLAALQLGRQIHH-LAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV- 519
           L AC+    +  G ++ H +  K   V +L     ++ + ++ G++  A   F +  P+ 
Sbjct: 605 LCACSRGGMVSEGWELFHSMTDKYSIVPNLKHYACMVDLLSRVGQLTEA-YNFINEMPIT 663

Query: 520 -DVISWNSLIAGYAIN 534
            D   W +L+ G  I+
Sbjct: 664 PDAAVWGALLNGCRIH 679



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 107/407 (26%), Positives = 192/407 (47%), Gaps = 52/407 (12%)

Query: 303 DGYVRIAKLDEARRLL-----------DQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK 351
           D YV + +L E RR +           D+  +  +    AM+S  V+      A ++F K
Sbjct: 95  DAYVALFRLCEWRRAVEPGLRACAHADDRHAWFGLRLGNAMLSMLVRFGETWHAWRVFAK 154

Query: 352 IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTW---------------- 391
           +   DV  WNVM+ GY + G ++EA++L+ +M    V  D+ T+                
Sbjct: 155 MPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMG 214

Query: 392 -------------------NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ 432
                              N ++  YA+   +  A K+F+ M    + +SWNA+I+G  +
Sbjct: 215 REVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAV-MDCISWNAMIAGHFE 273

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492
           N      L++F+ M Q+  + +  T+     A   L+ +   +++H LA+K G+  D+  
Sbjct: 274 NGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDVAF 333

Query: 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552
            NSLI MYA  G +  A  +F   D  D +SW ++I+GY  NG   +A++++  M +  V
Sbjct: 334 CNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNV 393

Query: 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAF 612
           +PD +T    L+AC+ +G +D G+KL E + E       V     ++++ +++ R+D+A 
Sbjct: 394 SPDDITIASALAACACLGSLDVGVKLHE-LAESKGFMSYVVVTNALLEMYAKSKRIDKAI 452

Query: 613 EMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTS 659
           E+ K M  K        + G C  H+N +        L++++P   +
Sbjct: 453 EVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLADVKPNSVT 499



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 117/472 (24%), Positives = 210/472 (44%), Gaps = 65/472 (13%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQM----SQKNTVTY--------------------- 49
           VF+ N  +   GK+G +EEA+ ++ +M     + +  T+                     
Sbjct: 160 VFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHA 219

Query: 50  --------------NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKE 95
                         N++++ YAK G V  ARK+F+ M   + +SWN+MIAG+  N +   
Sbjct: 220 HVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVMDCISWNAMIAGHFENGECNA 279

Query: 96  ARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVA 148
             ELF  M     +P+L +   +        ++  A+E+  L   +    D A  N+++ 
Sbjct: 280 GLELFLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDVAFCNSLIQ 339

Query: 149 GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VS 204
            YA +G   +A+ +   M +++ +SW +M+SGY KNG    A + +  ME  +V    ++
Sbjct: 340 MYASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDIT 399

Query: 205 WNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVT----MLSGYARNGRMLEARRLFDQMP 260
               L     L  LD   K  +    +  +S+V     +L  YA++ R+ +A  +F  MP
Sbjct: 400 IASALAACACLGSLDVGVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDKAIEVFKCMP 459

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEM---PERNPVSWTTMIDGYVRIAKLDEARRL 317
            ++VV+W++MIA +    +  EA   F  M    + N V++   +        L   + +
Sbjct: 460 EKDVVSWSSMIAGFCFNHRNFEALYYFRHMLADVKPNSVTFIAALAACAATGALRSGKEI 519

Query: 318 LDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRM 373
              +    IA +     A+I  YV+  +   A   F   G  DVV WN+MI G+   G  
Sbjct: 520 HAHVLRCGIAYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGNG 579

Query: 374 DEAINLFRQMVN----KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
           + A++ F QMV      D VT+  ++   ++   + +  ++F  M  + + V
Sbjct: 580 ETALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTDKYSIV 631



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 121/481 (25%), Positives = 217/481 (45%), Gaps = 38/481 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM----PQ 74
           N  +T   K G V  A K+F  M+  + +++N+MI+ + +NG  N   +LF  M     Q
Sbjct: 234 NALMTMYAKCGDVVAARKVFDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQ 293

Query: 75  RNLVSWNSM-IAGYLHNDKVKEAREL----FDKMFRPDLFSWALMITCYTRKGELEKARE 129
            NL++  S+ +A  L +D +  A+E+      + F  D+     +I  Y   G + +AR 
Sbjct: 294 PNLMTITSVTVASGLLSD-ITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQART 352

Query: 130 LFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNG 185
           +F  + +  D   W AM++GY K G  ++A ++   M   N+    ++  S L+     G
Sbjct: 353 VFSRM-DTRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLG 411

Query: 186 EMHLASKFFEAMEERDVVSW----NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
            + +  K  E  E +  +S+    N +L+ Y +   +D A + F+ +PE++VVSW +M++
Sbjct: 412 SLDVGVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIA 471

Query: 242 GYARNGRMLEARRLFDQMPI---RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW 298
           G+  N R  EA   F  M      N V + A +AA    G +     +   +  R  +++
Sbjct: 472 GFCFNHRNFEALYYFRHMLADVKPNSVTFIAALAACAATGALRSGKEIHAHV-LRCGIAY 530

Query: 299 -----TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD--- 350
                  +ID YV+  +   A         K++ +   MI+G+V +   + A   F+   
Sbjct: 531 EGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGNGETALSFFNQMV 590

Query: 351 KIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWN-----TMIAGYAQIRQM 404
           KIG   D V +  ++   ++ G + E   LF  M +K  +  N      M+   +++ Q+
Sbjct: 591 KIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTDKYSIVPNLKHYACMVDLLSRVGQL 650

Query: 405 DDAVKIFEEMGKRRNTVSWNALISGF-LQNEFHLDALKIFVLMTQEGKKADHSTLACALS 463
            +A     EM    +   W AL++G  +     L  L    ++  E   A +  L C L 
Sbjct: 651 TEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAKYVLELEPNDAGYHVLLCDLY 710

Query: 464 A 464
           A
Sbjct: 711 A 711



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 148/331 (44%), Gaps = 43/331 (12%)

Query: 29  GRVEEAIKIFSQMSQKNTVTY----NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMI 84
           G ++  +K+      K  ++Y    N+++  YAK+ R++ A ++F+ MP++++VSW+SMI
Sbjct: 411 GSLDVGVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMI 470

Query: 85  AGYLHNDKVKEARELFDKMF---RPDLFSWALMITCYTRKGELEKARELF---------- 131
           AG+  N +  EA   F  M    +P+  ++   +      G L   +E+           
Sbjct: 471 AGFCFNHRNFEALYYFRHMLADVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIAY 530

Query: 132 -DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
              LP        NA++  Y K G    A     A  +K++VSWN M++G+  +G    A
Sbjct: 531 EGYLP--------NALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGNGETA 582

Query: 191 SKFFEAM----EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ-----NVVSWVTMLS 241
             FF  M    E  D V++  +L        +   W+ F  + ++     N+  +  M+ 
Sbjct: 583 LSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTDKYSIVPNLKHYACMVD 642

Query: 242 GYARNGRMLEARRLFDQMPIR-NVVAWNAM-----IAAYVQRGQIEEAARLFIEMPERNP 295
             +R G++ EA    ++MPI  +   W A+     I  +V+ G++  AA+  +E+   + 
Sbjct: 643 LLSRVGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGEL--AAKYVLELEPNDA 700

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
                + D Y      D+  R+   M  K +
Sbjct: 701 GYHVLLCDLYADAGIWDKLARVRKTMREKGL 731


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  324 bits (831), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 199/659 (30%), Positives = 341/659 (51%), Gaps = 31/659 (4%)

Query: 101 DKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
           D+ F  +      +I  Y + G + +A+++F++L  K D   W  M+  Y + G+Y+ A 
Sbjct: 33  DRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILERK-DVFAWTRMIGIYCQQGDYDRAL 91

Query: 161 KLL------DAMPSK--NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY 212
            +       D MP+K   +   N+  S  +    M +  +  +   E DV     +++ Y
Sbjct: 92  GMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMY 151

Query: 213 VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV----AWN 268
            +   +  AW  F+++  ++VVSW  M++   ++ +   AR L+ +M +  VV       
Sbjct: 152 NKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLY 211

Query: 269 AMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRI----AKLDEARRLLDQMPYK 324
            +  AY     + E   ++  +  R   S   +++  + +      L +ARRL + M  +
Sbjct: 212 TVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDR 271

Query: 325 NIAAQTAMISGYVQNKRMDEANQIF-----DKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
           ++     +I+ YVQN+   EA ++F     D I  +D+  + +M+  Y     + +   +
Sbjct: 272 DVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDIT-FVLMLNVYTSLTSLAKG-KV 329

Query: 380 FRQMV-----NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
             ++V     ++D+V    +++ Y +      A KIF +MG + + ++W  +   + QN 
Sbjct: 330 IHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSK-DVITWTVMCVAYAQNG 388

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN 494
           F  +AL++F  M  EG++   +TL   L  CAHLAALQ GRQIH   I++G+  ++ V  
Sbjct: 389 FRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVET 448

Query: 495 SLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP 554
           +LI MY KCG++  A  +F+     D++ WNS++  YA +G   E ++LF +M ++G   
Sbjct: 449 ALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKA 508

Query: 555 DPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEM 614
           D V+F+ VLSA SH G V  G + F  M + ++I P  E Y C++DLL RAGR+ EA ++
Sbjct: 509 DAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDI 568

Query: 615 V-KGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGR 673
           V K     P+  +W TLLGACR H      + A E++ E +P  +  Y +LSN++A AG 
Sbjct: 569 VLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGD 628

Query: 674 WDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           WD V ++R  M   G +K+PG S IE+ N++H FL GD    R   I   L  L +++R
Sbjct: 629 WDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMR 687



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 124/464 (26%), Positives = 223/464 (48%), Gaps = 52/464 (11%)

Query: 222 WKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIE 281
           W    +  EQN +    ++  YA+ G + EA+++F+ +  ++V AW  MI  Y Q+G  +
Sbjct: 29  WHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYD 88

Query: 282 EAARLFIEMPERN----PVSWTTMIDGYVRIAKLDEAR----RLLDQMPYKNIAAQTAMI 333
            A  +F +M E +     V++  +++       L +      ++L Q    ++   TA+I
Sbjct: 89  RALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALI 148

Query: 334 SGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIV 389
           + Y +   +  A   F ++   DVV W  MI    Q  +   A  L+R+M    V  + +
Sbjct: 149 NMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKI 208

Query: 390 TWNTMIAGY----------------------AQIRQMD-------------DAVKIFEEM 414
           T  T+   Y                      + +R M+             DA ++FE+M
Sbjct: 209 TLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDM 268

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
              R+ V+WN +I+ ++QNE   +A+++F  + Q+G KA+  T    L+    L +L  G
Sbjct: 269 VD-RDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKG 327

Query: 475 RQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAIN 534
           + IH L  ++GY  D+ V  +L+++Y +C     A  +F D    DVI+W  +   YA N
Sbjct: 328 KVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQN 387

Query: 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE-VYAIEPLVE 593
           G   EA++LF+EM +EG  P   T + VL  C+H+  +  G ++   + E  + +E +VE
Sbjct: 388 GFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVE 447

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMH 637
               +I++  + G++ EA  + + M  K +  +W ++LGA   H
Sbjct: 448 --TALINMYGKCGKMAEARSVFEKMA-KRDILVWNSMLGAYAQH 488



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 135/576 (23%), Positives = 262/576 (45%), Gaps = 73/576 (12%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK 102
           ++N +    +I  YA+ G V +A+++FE + ++++ +W  MI  Y        A  +F +
Sbjct: 37  EQNNLVCGHLIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQ 96

Query: 103 MFRPDLF----SWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGN 155
           M   D+     ++  ++        L+   E+   +  +    D     A++  Y K G+
Sbjct: 97  MQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGS 156

Query: 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML----DG 211
              A      +  +++VSW +M++   ++ +  LA   +  M+   VV   + L    + 
Sbjct: 157 VRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNA 216

Query: 212 YVELDDLDSAWKFF-----QKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA 266
           Y +   L S  KF       ++ E +V    + ++ +   G + +ARRLF+ M  R+VV 
Sbjct: 217 YGDPHYL-SEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVT 275

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEAR---RLLD 319
           WN +I  YVQ     EA RLF  + +     N +++  M++ Y  +  L + +    L+ 
Sbjct: 276 WNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVK 335

Query: 320 QMPY-KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
           +  Y +++   TA++S Y + +   +A +IF  +G+ DV+ W VM   YAQ G   EA+ 
Sbjct: 336 EAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQ 395

Query: 379 LFRQM---------------------------------------VNKDIVTWNTMIAGYA 399
           LF++M                                          ++V    +I  Y 
Sbjct: 396 LFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVETALINMYG 455

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
           +  +M +A  +FE+M K R+ + WN+++  + Q+ ++ + L++F  M  +G+KAD  +  
Sbjct: 456 KCGKMAEARSVFEKMAK-RDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFV 514

Query: 460 CALSACAHLAALQLGRQIHHLAIKSGYVN---DLFVGNSLITMYAKCGRIQNA-ELLFKD 515
             LSA +H  ++  G Q     ++   +    +L+    ++ +  + GRIQ A +++ K 
Sbjct: 515 SVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELY--GCVVDLLGRAGRIQEAVDIVLKL 572

Query: 516 ADPV-DVISWNSLIAGYAINGNATEAIKLFEEMVME 550
           +  + D I W +L+ G     N T+  K   E V+E
Sbjct: 573 SGCLPDGILWMTLL-GACRTHNKTDQAKAAAEQVLE 607



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 196/406 (48%), Gaps = 27/406 (6%)

Query: 36  KIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKE 95
           +I  Q  + +     ++I+ Y K G V  A   F+++  R++VSW +MIA  + +D+   
Sbjct: 131 QILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFAL 190

Query: 96  ARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVA 148
           AR L+ +M      P+  +   +   Y     L + + ++ L+ ++    D    N+ + 
Sbjct: 191 ARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMN 250

Query: 149 GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VS 204
            +   G   +A++L + M  +++V+WN +++ Y +N     A + F  +++  +    ++
Sbjct: 251 MFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDIT 310

Query: 205 WNLMLDGYVELDDLDSAWKFFQKIPE----QNVVSWVTMLSGYARNGRMLEARRLFDQMP 260
           + LML+ Y  L  L       + + E    ++VV    ++S Y R     +A ++F  M 
Sbjct: 311 FVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMG 370

Query: 261 IRNVVAWNAMIAAYVQRGQIEEAARLFIEM--PERNPVSWT--TMIDGYVRIAKLDEARR 316
            ++V+ W  M  AY Q G  +EA +LF EM    R P S T   ++D    +A L + R+
Sbjct: 371 SKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQ 430

Query: 317 LLDQMPYKN----IAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGR 372
           +   +        +  +TA+I+ Y +  +M EA  +F+K+   D++ WN M+  YAQ G 
Sbjct: 431 IHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGY 490

Query: 373 MDEAINLFRQMV----NKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            DE + LF QM       D V++ ++++  +    + D  + F  M
Sbjct: 491 YDETLQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAM 536



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 173/377 (45%), Gaps = 26/377 (6%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEA 96
           + S++ + +    NS ++ +   G + DAR+LFE M  R++V+WN +I  Y+ N+   EA
Sbjct: 233 VSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEA 292

Query: 97  RELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWNAMVAG 149
             LF ++     + +  ++ LM+  YT    L K + + +L+       D     A+++ 
Sbjct: 293 VRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSL 352

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM--EERDVVSWNL 207
           Y +     +A K+   M SK++++W  M   Y +NG    A + F+ M  E R   S  L
Sbjct: 353 YGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATL 412

Query: 208 --MLDGYVELDDLDSAWKFFQKIPEQN----VVSWVTMLSGYARNGRMLEARRLFDQMPI 261
             +LD    L  L    +    I E      +V    +++ Y + G+M EAR +F++M  
Sbjct: 413 VAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAK 472

Query: 262 RNVVAWNAMIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARRL 317
           R+++ WN+M+ AY Q G  +E  +LF +M     + + VS+ +++        + +  + 
Sbjct: 473 RDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQY 532

Query: 318 LDQMPYKNIAAQTAMISGYV-----QNKRMDEANQIFDKIG--THDVVCWNVMIKGYAQC 370
              M        T  + G V     +  R+ EA  I  K+     D + W  ++      
Sbjct: 533 FVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTH 592

Query: 371 GRMDEAINLFRQMVNKD 387
            + D+A     Q++ +D
Sbjct: 593 NKTDQAKAAAEQVLERD 609



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 101/216 (46%), Gaps = 4/216 (1%)

Query: 452 KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL 511
           K D +     L  C+    +  GR++H      G+  +  V   LI MYA+CG +  A+ 
Sbjct: 2   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 61

Query: 512 LFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
           +F+  +  DV +W  +I  Y   G+   A+ +F +M  E V P  VT++ +L+AC+    
Sbjct: 62  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 121

Query: 572 VDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           +  G+++   + +    E  V     +I++ ++ G +  A++  K ++ + +   W  ++
Sbjct: 122 LKDGMEIHGQILQ-QGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHR-DVVSWTAMI 179

Query: 632 GACRMHQNIKLGRIAVEK--LSELEPQKTSCYALLS 665
            AC  H    L R    +  L  + P K + Y + +
Sbjct: 180 AACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFN 215



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 66/120 (55%), Gaps = 13/120 (10%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM----PQRNL 77
           I   GK G++ EA  +F +M++++ + +NSM+ AYA++G  ++  +LF QM     + + 
Sbjct: 451 INMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKADA 510

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKMFR-------PDLFSWALMITCYTRKGELEKAREL 130
           VS+ S+++   H+  V +  + F  M +       P+L+    ++    R G +++A ++
Sbjct: 511 VSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELY--GCVVDLLGRAGRIQEAVDI 568


>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial [Vitis vinifera]
 gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
          Length = 700

 Score =  324 bits (831), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 191/650 (29%), Positives = 333/650 (51%), Gaps = 61/650 (9%)

Query: 111 WALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN 170
           ++L+  C T    L K   L  +    ED  C   +V+ Y   G+   A+ + D + + +
Sbjct: 43  FSLLGICKT-VSSLRKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPD 101

Query: 171 IVSWNSMLSGYTKNGEMHLASKFF-----EAMEERDVVSWNLMLDGYVELDDLDSAWKFF 225
           + SW  M+  Y  N       +F+     + + E D V ++++L    EL + D   K  
Sbjct: 102 LYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLH 161

Query: 226 QKI-----PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQI 280
            +I     P+  V++   ++  YA+   + ++RR+FD++  RNVV W +MI  YVQ   +
Sbjct: 162 CQIVKVGSPDSFVLT--GLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCL 219

Query: 281 EEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEAR----RLLDQMPYKNIAAQTAM 332
           +E   LF  M E     N  +  +++    ++  L + +     ++      N    T +
Sbjct: 220 KEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPL 279

Query: 333 ISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR----------- 381
           +  Y +   + +A  +FD++ T D+V W  MI GYAQ G   EA+ LF            
Sbjct: 280 LDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNT 339

Query: 382 ---------------------------QMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
                                      ++ ++D    N ++  YA+   + DA  +FE +
Sbjct: 340 VTTSSVLSACAQTGSLNMGRSVHCLGIKLGSEDATFENALVDMYAKCHMIGDARYVFETV 399

Query: 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG 474
             + + ++WN++ISG+ QN +  +AL++F  M  +    D  TL   LSACA + A ++G
Sbjct: 400 FDK-DVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVG 458

Query: 475 RQIHHLAIKSGYVN-DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAI 533
             +H  AIK+G ++  ++VG +L+  YAKCG  ++A ++F +    + I+W+++I GY I
Sbjct: 459 SSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIFDEMGEKNTITWSAMIGGYGI 518

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVE 593
            G+ + +++LF +M+ E + P+ V F  +LSACSH G++  G + F  M +VY   P ++
Sbjct: 519 QGDCSRSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVPSMK 578

Query: 594 HYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653
           HYACM+DLL+RAGRL+EA + ++ + I+P+  + G  L  CR+H    LG +AV ++ EL
Sbjct: 579 HYACMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVRRMLEL 638

Query: 654 EPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQ 703
            P K   Y L+SN++A  GRW +  +V   M+  G  K PG S ++++  
Sbjct: 639 HPDKACYYVLMSNLYASEGRWSQANQVMELMKQRGLAKLPGWSLVDIETS 688



 Score =  142 bits (359), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 133/583 (22%), Positives = 258/583 (44%), Gaps = 75/583 (12%)

Query: 3   ASLKSIGNKGSY-VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGR 61
           AS++SI +   + +    K ++ L    R   A+ +   +S+ + +    ++S Y   G 
Sbjct: 32  ASIQSISSNPCFSLLGICKTVSSL----RKIHALLVVHGLSE-DLLCETKLVSLYGSFGH 86

Query: 62  VNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP-----DLFSWALMIT 116
           V  AR +F+++   +L SW  MI  Y  ND   E  + ++   R      D   +++++ 
Sbjct: 87  VECARLMFDRIRNPDLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLK 146

Query: 117 CYTRKGELEKARELFDLL--PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSW 174
             +   E ++ R+L   +      D+     +V  YAK     +++++ D +  +N+V W
Sbjct: 147 ACSELRETDEGRKLHCQIVKVGSPDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCW 206

Query: 175 NSMLSGYTKNGEMH----LASKFFEAMEERDVVSWNLMLDGYVELDDLDSA-WKFFQKIP 229
            SM+ GY +N  +     L ++  E + E +  +   ++    +L  L    W     I 
Sbjct: 207 TSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIK 266

Query: 230 ---EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARL 286
              + N      +L  Y + G + +A  +FD++   ++V+W AMI  Y QRG   EA +L
Sbjct: 267 SGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKL 326

Query: 287 FIE------MPERNPVSWTTMIDGYVRIAKLDEARR---LLDQMPYKNIAAQTAMISGYV 337
           F +      +P  N V+ ++++    +   L+  R    L  ++  ++   + A++  Y 
Sbjct: 327 FTDERWKDLLP--NTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGSEDATFENALVDMYA 384

Query: 338 QNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNT 393
           +   + +A  +F+ +   DV+ WN +I GY Q G   EA+ LF QM    V  D +T  +
Sbjct: 385 KCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVS 444

Query: 394 MIAG------------------------------------YAQIRQMDDAVKIFEEMGKR 417
           +++                                     YA+    + A  IF+EMG+ 
Sbjct: 445 VLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIFDEMGE- 503

Query: 418 RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG-RQ 476
           +NT++W+A+I G+        +L++F  M +E  + +       LSAC+H   L  G R 
Sbjct: 504 KNTITWSAMIGGYGIQGDCSRSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRY 563

Query: 477 IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
            + +     +V  +     ++ + A+ GR++ A L F +  P+
Sbjct: 564 FNTMCQVYNFVPSMKHYACMVDLLARAGRLEEA-LDFIEKIPI 605



 Score =  123 bits (308), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 110/494 (22%), Positives = 210/494 (42%), Gaps = 74/494 (14%)

Query: 40  QMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEAREL 99
           ++   ++     ++  YAK   V D+R++F+++  RN+V W SMI GY+ ND +KE   L
Sbjct: 166 KVGSPDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVL 225

Query: 100 FDKM---------------------------------------FRPDLFSWALMITCYTR 120
           F++M                                       F  + F    ++  Y +
Sbjct: 226 FNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFK 285

Query: 121 KGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL------DAMPSKNIVSW 174
            G++  A  +FD L    D   W AM+ GYA+ G   EA KL       D +P  N V+ 
Sbjct: 286 CGDIRDAFSVFDELSTI-DLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLP--NTVTT 342

Query: 175 NSMLSGYTKNGEMHLASKFF---EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ 231
           +S+LS   + G +++          +   D    N ++D Y +   +  A   F+ + ++
Sbjct: 343 SSVLSACAQTGSLNMGRSVHCLGIKLGSEDATFENALVDMYAKCHMIGDARYVFETVFDK 402

Query: 232 NVVSWVTMLSGYARNGRMLEARRLFDQM----------PIRNVVAWNAMIAAYVQRGQIE 281
           +V++W +++SGY +NG   EA  LFDQM           + +V++  A + AY + G   
Sbjct: 403 DVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAY-RVGSSL 461

Query: 282 EAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKR 341
               +   +   +    T +++ Y +    + AR + D+M  KN    +AMI GY     
Sbjct: 462 HGYAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIFDEMGEKNTITWSAMIGGYGIQGD 521

Query: 342 MDEANQIF-----DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN-----KDIVTW 391
              + ++F     +K+  ++V+ +  ++   +  G + E    F  M         +  +
Sbjct: 522 CSRSLELFGDMLKEKLEPNEVI-FTTILSACSHSGMLGEGWRYFNTMCQVYNFVPSMKHY 580

Query: 392 NTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF-LQNEFHLDALKIFVLMTQEG 450
             M+   A+  ++++A+   E++  + +     A + G  L + F L  + +  ++    
Sbjct: 581 ACMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVRRMLELHP 640

Query: 451 KKADHSTLACALSA 464
            KA +  L   L A
Sbjct: 641 DKACYYVLMSNLYA 654



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 116/515 (22%), Positives = 204/515 (39%), Gaps = 100/515 (19%)

Query: 1   MKASLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNG 60
           +   +  +G+  S+V      +    K   VE++ ++F ++  +N V + SMI  Y +N 
Sbjct: 160 LHCQIVKVGSPDSFVLT--GLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQND 217

Query: 61  RVNDARKLFEQM----PQRNLVSWNSMIA-----GYLHNDK------------------- 92
            + +   LF +M     + N  +  S++      G LH  K                   
Sbjct: 218 CLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVT 277

Query: 93  -----------VKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF------DLLP 135
                      +++A  +FD++   DL SW  MI  Y ++G   +A +LF      DLLP
Sbjct: 278 PLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLP 337

Query: 136 N-------------------------------KEDTACWNAMVAGYAKIGNYNEAKKLLD 164
           N                                ED    NA+V  YAK     +A+ + +
Sbjct: 338 NTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGSEDATFENALVDMYAKCHMIGDARYVFE 397

Query: 165 AMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKF 224
            +  K++++WNS++SGYT+NG  + A + F+ M    V    + L   +       A++ 
Sbjct: 398 TVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRV 457

Query: 225 FQKIP---------EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYV 275
              +            +V     +L+ YA+ G    AR +FD+M  +N + W+AMI  Y 
Sbjct: 458 GSSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIFDEMGEKNTITWSAMIGGYG 517

Query: 276 QRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLDEARRLLDQMP-----YKNI 326
            +G    +  LF +M     E N V +TT++        L E  R  + M        ++
Sbjct: 518 IQGDCSRSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVPSM 577

Query: 327 AAQTAMISGYVQNKRMDEANQIFDKIGTH-DVVCWNVMIKGYAQCGRMDEAINLFRQM-- 383
                M+    +  R++EA    +KI    DV      + G     R D      R+M  
Sbjct: 578 KHYACMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVRRMLE 637

Query: 384 VNKDIVTWNTMIAG-YAQIRQMDDAVKIFEEMGKR 417
           ++ D   +  +++  YA   +   A ++ E M +R
Sbjct: 638 LHPDKACYYVLMSNLYASEGRWSQANQVMELMKQR 672


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  324 bits (831), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 179/485 (36%), Positives = 272/485 (56%), Gaps = 30/485 (6%)

Query: 253 RRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPER--NPVSWTTMIDGYVRIAK 310
           R LF Q+   N  AW A+I AY  RG + +A   +  M +R  +P+S+T         A 
Sbjct: 63  RLLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFS-------AL 115

Query: 311 LDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC 370
                 +        + AQT ++ G+                 + D+   N +I  Y +C
Sbjct: 116 FSACAAVRHSALGAQLHAQTLLLGGF-----------------SSDLYVNNAVIDMYVKC 158

Query: 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF 430
           G +  A  +F +M  +D+++W  +I  Y +I  M  A  +F+ +   ++ V+W A+++G+
Sbjct: 159 GSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLFDGL-PVKDMVTWTAMVTGY 217

Query: 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV--N 488
            QN   +DAL++F  +  EG + D  TL   +SACA L A +    I  +A  SG+   +
Sbjct: 218 AQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGD 277

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           ++ VG++LI MY+KCG ++ A  +FK     +V S++S+I G+AI+G A  AIKLF +M+
Sbjct: 278 NVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDML 337

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608
             GV P+ VTF+GVL+ACSH GLVD G +LF  M + Y + P  E YACM DLLSRAG L
Sbjct: 338 ETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYL 397

Query: 609 DEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMH 668
           ++A ++V+ M ++ +  +WG LLGA  +H N  +  IA ++L ELEP     Y LLSN +
Sbjct: 398 EKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIASKRLFELEPDNIGNYLLLSNTY 457

Query: 669 AEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKN-QIHTFLSGDPKQCRTAEICNTLKTL 727
           A AGRWD+V KVR  +     +K PG SW+E KN  IH F++GD    +  EI   L  L
Sbjct: 458 ASAGRWDDVSKVRKLLREKNLKKNPGWSWVEAKNGMIHKFVAGDVSHPKINEIKKELNDL 517

Query: 728 AAQIR 732
             +++
Sbjct: 518 LERLK 522



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 131/528 (24%), Positives = 230/528 (43%), Gaps = 80/528 (15%)

Query: 146 MVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSW 205
           +V     +  ++  + L   + + N  +W +++  Y   G +  A  F+ +M +R V   
Sbjct: 49  LVTALPHVPLHSYPRLLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPI 108

Query: 206 NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVV 265
           +           L SA    +                ++  G  L A+ L       ++ 
Sbjct: 109 SFTFSA------LFSACAAVR----------------HSALGAQLHAQTLLLGGFSSDLY 146

Query: 266 AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKN 325
             NA+I  YV+ G +  A  +F EMPER+ +SWT +I  Y RI  +  AR L D +P K+
Sbjct: 147 VNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKD 206

Query: 326 IAAQTAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFR 381
           +   TAM++GY QN    +A ++F ++       D V    +I   AQ G    A N  R
Sbjct: 207 MVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYA-NWIR 265

Query: 382 QM-------VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434
            +       V  +++  + +I  Y++   +++A  +F+ M + RN  S++++I GF  + 
Sbjct: 266 DIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGM-RERNVFSYSSMIVGFAIHG 324

Query: 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN 494
               A+K+F  M + G K +H T    L+AC+H   +  G+Q                  
Sbjct: 325 RARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQ------------------ 366

Query: 495 SLITMYAKC-GRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVA 553
            L     KC G    AEL    A   D++S     AGY       +A++L E M ME   
Sbjct: 367 -LFASMEKCYGVAPTAELY---ACMTDLLSR----AGY-----LEKALQLVETMPMES-- 411

Query: 554 PDPVTFIGVLSACSHVGLVDGGLKLFECMTE-VYAIEPL-VEHYACMIDLLSRAGRLDEA 611
            D   + G L   SH   V G   + E  ++ ++ +EP  + +Y  + +  + AGR D+ 
Sbjct: 412 -DGAVW-GALLGASH---VHGNPDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDV 466

Query: 612 FEMVKGMK---IKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQ 656
            ++ K ++   +K N G W  +     M      G ++  K++E++ +
Sbjct: 467 SKVRKLLREKNLKKNPG-WSWVEAKNGMIHKFVAGDVSHPKINEIKKE 513



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 97/422 (22%), Positives = 182/422 (43%), Gaps = 78/422 (18%)

Query: 37  IFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL--VSWN-----SMIAGYLH 89
           +FSQ+   N   + ++I AYA  G ++ A   +  M +R +  +S+      S  A   H
Sbjct: 65  LFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRH 124

Query: 90  NDKVKE--ARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMV 147
           +    +  A+ L    F  DL+    +I  Y + G L  AR +FD +P + D   W  ++
Sbjct: 125 SALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPER-DVISWTGLI 183

Query: 148 AGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----- 202
             Y +IG+   A+ L D +P K++V+W +M++GY +N     A + F  + +  V     
Sbjct: 184 VAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEV 243

Query: 203 -----------------VSW-------------------NLMLDGYVELDDLDSAWKFFQ 226
                             +W                   + ++D Y +  +++ A+  F+
Sbjct: 244 TLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFK 303

Query: 227 KIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEE 282
            + E+NV S+ +M+ G+A +GR   A +LF  M    V    V +  ++ A    G +++
Sbjct: 304 GMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQ 363

Query: 283 AARLFIEMPERNPVS-----WTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGY- 336
             +LF  M +   V+     +  M D   R   L++A +L++ MP ++  A    + G  
Sbjct: 364 GQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGAS 423

Query: 337 ----------VQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
                     + +KR+ E     D IG      + ++   YA  GR D+   + + +  K
Sbjct: 424 HVHGNPDVAEIASKRLFELEP--DNIGN-----YLLLSNTYASAGRWDDVSKVRKLLREK 476

Query: 387 DI 388
           ++
Sbjct: 477 NL 478



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 93/401 (23%), Positives = 183/401 (45%), Gaps = 36/401 (8%)

Query: 62  VNDARKLFEQMPQRNLVSWNSMIAGYL-------HNDKVKEARELFDKMFRPDLFSWALM 114
           +N A+++  Q+  +NL   + ++   L       H       R LF ++  P+ F+W  +
Sbjct: 21  LNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLHTPNPFAWTAL 80

Query: 115 ITCYTRKGELEKARELFDLLPNKEDT-------ACWNAMVA-GYAKIGNYNEAKKLLDAM 166
           I  Y  +G L +A   +  +  +  +       A ++A  A  ++ +G    A+ LL   
Sbjct: 81  IRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHAQTLLLGG 140

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
            S ++   N+++  Y K G +  A   F+ M ERDV+SW  ++  Y  + D+ +A   F 
Sbjct: 141 FSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLFD 200

Query: 227 KIPEQNVVSWVTMLSGYARNGRMLEA----RRLFDQMPIRNVVAWNAMIAAYVQRGQIEE 282
            +P +++V+W  M++GYA+N   ++A    RRL D+    + V    +I+A  Q G   +
Sbjct: 201 GLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGA-SK 259

Query: 283 AARLFIEMPER-------NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG 335
            A    ++ E        N +  + +ID Y +   ++EA  +   M  +N+ + ++MI G
Sbjct: 260 YANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVG 319

Query: 336 YVQNKRMDEANQIF-DKIGT---HDVVCWNVMIKGYAQCGRMDEAINLFRQM-----VNK 386
           +  + R   A ++F D + T    + V +  ++   +  G +D+   LF  M     V  
Sbjct: 320 FAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAP 379

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
               +  M    ++   ++ A+++ E M    +   W AL+
Sbjct: 380 TAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALL 420



 Score = 96.7 bits (239), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 157/341 (46%), Gaps = 22/341 (6%)

Query: 8   IGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARK 67
           +G   S ++  N  I    K G +  A  +F +M +++ +++  +I AY + G +  AR 
Sbjct: 138 LGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARD 197

Query: 68  LFEQMPQRNLVSWNSMIAGYLHN----DKVKEARELFDKMFRPDLFSWALMITCYTRKGE 123
           LF+ +P +++V+W +M+ GY  N    D ++  R L D+    D  +   +I+   + G 
Sbjct: 198 LFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGA 257

Query: 124 LEKARELFDLLPNK-----EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSML 178
            + A  + D+  +      ++    +A++  Y+K GN  EA  +   M  +N+ S++SM+
Sbjct: 258 SKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMI 317

Query: 179 SGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV 234
            G+  +G    A K F  M E  V    V++  +L        +D   + F  + +   V
Sbjct: 318 VGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGV 377

Query: 235 S-----WVTMLSGYARNGRMLEARRLFDQMPIRNVVA-WNAMIAAYVQRGQ---IEEAAR 285
           +     +  M    +R G + +A +L + MP+ +  A W A++ A    G     E A++
Sbjct: 378 APTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIASK 437

Query: 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
              E+   N  ++  + + Y    + D+  ++   +  KN+
Sbjct: 438 RLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNL 478


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  324 bits (831), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 161/431 (37%), Positives = 255/431 (59%), Gaps = 13/431 (3%)

Query: 311 LDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC 370
           L   R++ + MP ++I +   +ISG  QN   ++A  +  ++G  D+   +  +      
Sbjct: 146 LGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPI 205

Query: 371 GRMDEAINLF----------RQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
               E +NL           R   + D+   +++I  YA+  ++DD+ ++F  M  + + 
Sbjct: 206 --FAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFY-MLPQHDG 262

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
           +SWN++I+G +QN    + LK F  M     K +H + +  + ACAHL  L LG+Q+H  
Sbjct: 263 ISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGY 322

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEA 540
            I+S +  ++F+ ++L+ MYAKCG I+ A  +F   +  D++SW ++I GYA++G+A +A
Sbjct: 323 IIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDA 382

Query: 541 IKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMID 600
           I LF+ M +EGV P+ V F+ VL+ACSH GLVD   K F  MT+ Y I P +EHYA + D
Sbjct: 383 ISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVAD 442

Query: 601 LLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSC 660
           LL R GRL+EA+E +  M I+P   +W TLL ACR+H+NI+L     +KL  ++PQ    
Sbjct: 443 LLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGA 502

Query: 661 YALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           Y LLSN+++ AGRW +  K+R++M   G +K+P CSWIE+KN++H F++GD        I
Sbjct: 503 YVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRI 562

Query: 721 CNTLKTLAAQI 731
              LK L  Q+
Sbjct: 563 NEALKVLLEQM 573



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 159/327 (48%), Gaps = 24/327 (7%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMIS-AYAKNGR----VNDARKLFEQMP 73
           ++++  + ++G + +   I  Q++    V      S  Y+K  +    +   RK+FE MP
Sbjct: 98  DERVAGIDQNGDLNQMSNILYQVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMP 157

Query: 74  QRNLVSWNSMIAGY----LHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARE 129
           +R++VSWN++I+G     +H D +   RE+ +   RPD F+ + ++  +     L K +E
Sbjct: 158 KRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKE 217

Query: 130 LFDL-LPNKEDTACW--NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           +    + N  D   +  ++++  YAK    +++ ++   +P  + +SWNS+++G  +NG 
Sbjct: 218 IHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGM 277

Query: 187 MHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVT 238
                KFF+ M     + + VS++ ++     L  L    +    I     + NV     
Sbjct: 278 FDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASA 337

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF----IEMPERN 294
           ++  YA+ G +  AR +FD+M + ++V+W AMI  Y   G   +A  LF    +E  + N
Sbjct: 338 LVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPN 397

Query: 295 PVSWTTMIDGYVRIAKLDEARRLLDQM 321
            V++  ++        +DEA +  + M
Sbjct: 398 YVAFMAVLTACSHAGLVDEAWKYFNSM 424



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 156/331 (47%), Gaps = 31/331 (9%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF----R 105
           +S+I  YAK  RV+D+ ++F  +PQ + +SWNS+IAG + N    E  + F +M     +
Sbjct: 235 SSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIK 294

Query: 106 PDLFSWALMITCYTRKGELEKARELFD-LLPNKEDTACW--NAMVAGYAKIGNYNEAKKL 162
           P+  S++ ++        L   ++L   ++ ++ D   +  +A+V  YAK GN   A+ +
Sbjct: 295 PNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWI 354

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV----VSWNLMLDGYVELDDL 218
            D M   ++VSW +M+ GY  +G  + A   F+ ME   V    V++  +L        +
Sbjct: 355 FDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLV 414

Query: 219 DSAWKFFQKIPEQNVVSWVTMLSGYA-------RNGRMLEARRLFDQMPIRNV-VAWNAM 270
           D AWK+F  + +   +  +  L  YA       R GR+ EA      M I      W+ +
Sbjct: 415 DEAWKYFNSMTQDYRI--IPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTL 472

Query: 271 IAAYVQRGQIEEA----ARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
           +AA      IE A     +LF   P+ N  ++  + + Y    +  +AR+L   M  K +
Sbjct: 473 LAACRVHKNIELAEKVSKKLFTVDPQ-NIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGM 531

Query: 327 AAQTAMISGYVQNKRM-----DEANQIFDKI 352
             + A     ++NK       D+++  +D+I
Sbjct: 532 KKKPACSWIEIKNKVHAFVAGDKSHPYYDRI 562



 Score = 76.6 bits (187), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 75/364 (20%), Positives = 166/364 (45%), Gaps = 35/364 (9%)

Query: 92  KVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYA 151
           +V   +++FD+    D++S     + Y     L   R++F+++P K D   WN +++G A
Sbjct: 119 QVNTYKKVFDEGKTSDVYSKKEKESYY-----LGSLRKVFEMMP-KRDIVSWNTVISGNA 172

Query: 152 KIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYT------KNGEMHLASKFFEAMEERD 201
           + G + +A  ++  M + ++     + +S+L  +       K  E+H  +       + D
Sbjct: 173 QNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYA--IRNGYDAD 230

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI 261
           V   + ++D Y +   +D + + F  +P+ + +SW ++++G  +NG   E  + F QM I
Sbjct: 231 VFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLI 290

Query: 262 R----NVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDE 313
                N V++++++ A      +    +L   +     + N    + ++D Y +   +  
Sbjct: 291 AKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRT 350

Query: 314 ARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV----VCWNVMIKGYAQ 369
           AR + D+M   ++ + TAMI GY  +    +A  +F ++    V    V +  ++   + 
Sbjct: 351 ARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSH 410

Query: 370 CGRMDEAINLFRQMV-NKDIVTWNTMIAGYA----QIRQMDDAVKIFEEMGKRRNTVSWN 424
            G +DEA   F  M  +  I+      A  A    ++ ++++A +   +M        W+
Sbjct: 411 AGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWS 470

Query: 425 ALIS 428
            L++
Sbjct: 471 TLLA 474



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 122/278 (43%), Gaps = 62/278 (22%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           N    ++++  YAK G +  AR +F++M   ++VSW +MI GY  +    +A  LF +M 
Sbjct: 331 NVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRME 390

Query: 104 ---FRPDLFSWALMITCYTRKGELEKARELFD-------LLPNKEDTACWNAMVAGYAKI 153
               +P+  ++  ++T  +  G +++A + F+       ++P  E  A   A+     ++
Sbjct: 391 VEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYA---AVADLLGRV 447

Query: 154 GNYNEAKKLLDAM---PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLD 210
           G   EA + +  M   P+ ++  W+++L+    +  + LA K                  
Sbjct: 448 GRLEEAYEFISDMHIEPTGSV--WSTLLAACRVHKNIELAEKV----------------- 488

Query: 211 GYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM----------- 259
                     + K F   P QN+ ++V + + Y+  GR  +AR+L   M           
Sbjct: 489 ----------SKKLFTVDP-QNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPAC 537

Query: 260 ---PIRNVV-AWNAMIAAYVQRGQIEEAARLFIEMPER 293
               I+N V A+ A   ++    +I EA ++ +E  ER
Sbjct: 538 SWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMER 575



 Score = 42.7 bits (99), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 29/57 (50%)

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502
           M   GK  DH+     L +C  +  L+ G  +H   I+ G   DL+  N+L+ MY+K
Sbjct: 1   MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSK 57


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  324 bits (831), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 217/755 (28%), Positives = 389/755 (51%), Gaps = 76/755 (10%)

Query: 52  MISAYAKNGRVND---------ARKLFEQMPQRNL-VSWNSMIAGYLHNDKVKEARELFD 101
           +++  A   RV D         AR   +++P+R+  V  N ++  Y     V E  + F 
Sbjct: 29  LLATRASPARVEDGVCLRDPPGARYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFS 88

Query: 102 KMFRPDLFSWALMITCYTRKGELEKARELFDLLP--------NKEDTACWNAMVAGYAKI 153
              R  +   +  ++C  +       R L + L         ++ + +   ++V  Y K 
Sbjct: 89  VARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKC 148

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMH--LASKFFEAMEE---RDVVSWNLM 208
           G+  E  ++ + MP KN+V+W S+L+G   + +MH  + + FF    E    +  ++  +
Sbjct: 149 GSVCEGIEVFEGMPKKNVVTWTSLLTG-CAHAQMHSEVMALFFRMRAEGIWPNPFTFASV 207

Query: 209 LDGYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNV 264
           L        LD   +   +  +    S V    ++++ YA+ G + +A+ +F+ M  R++
Sbjct: 208 LSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDM 267

Query: 265 VAWNAMIAAYVQRGQIE-EAARLFIE----MPERNPVSWTTMIDGYVRIAKLDEARRL-- 317
           V+WN ++A  +Q  + E EA +LF E    M +    ++ T+I     + +L  AR+L  
Sbjct: 268 VSWNTLMAG-LQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHS 326

Query: 318 --LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD-KIGTHDVVCWNVMIKGYAQCGRMD 374
             L    +      TA+   Y +   + +A  IF    G+ +VV W  +I G  Q G + 
Sbjct: 327 CVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIP 386

Query: 375 EAINLFRQM--------------------------VNKDIVTWN---------TMIAGYA 399
            A+ LF +M                          ++  ++  N          ++A Y+
Sbjct: 387 LAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPFVGTALLASYS 446

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
           +    +DA+ IF+ M ++++ V+W+A++S   Q      A  +F  M  +G K +  T++
Sbjct: 447 KFGSTEDALSIFK-MIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTIS 505

Query: 460 CALSACAHLAA-LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP 518
             + ACA  +A +  GRQ H ++IK  Y + + V ++L++MY++ G I +A+++F+    
Sbjct: 506 SVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTD 565

Query: 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578
            D++SWNS+I+GYA +G + +AI+ F +M   G+  D VTF+ V+  C+H GLV  G + 
Sbjct: 566 RDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQY 625

Query: 579 FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQ 638
           F+ M   + I P +EHYACM+DL SRAG+LDE   +++ M     A +W TLLGACR+H+
Sbjct: 626 FDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHK 685

Query: 639 NIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWI 698
           N++LG+ + +KL  LEP  +S Y LLSN++A AG+W E ++VR  M+    +K+ GCSWI
Sbjct: 686 NVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWI 745

Query: 699 EVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
           ++KN++H+F++ D     + +I   LK +  +++ 
Sbjct: 746 QIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQ 780



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 129/551 (23%), Positives = 246/551 (44%), Gaps = 67/551 (12%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
            S++  Y K G V +  ++FE MP++N+V+W S++ G  H     E   LF +M      
Sbjct: 139 TSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIW 198

Query: 106 PDLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNEAKKL 162
           P+ F++A +++    +G L+  + +         +      N+++  YAK G   +AK +
Sbjct: 199 PNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSV 258

Query: 163 LDAMPSKNIVSWNSMLSGYTKN-GEMHLASKFFEA---MEERDVVSWNLMLDGYVELDDL 218
            + M ++++VSWN++++G   N  E+     F E+   M +    ++  ++     L  L
Sbjct: 259 FNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQL 318

Query: 219 DSAWKFFQKIPEQ------NVVSWVTMLSGYARNGRMLEARRLFDQMP-IRNVVAWNAMI 271
             A +    + +       NV++   +   Y++ G + +A  +F      RNVV+W A+I
Sbjct: 319 ALARQLHSCVLKHGFHLTGNVMT--ALADAYSKCGELADALNIFSMTTGSRNVVSWTAII 376

Query: 272 AAYVQRGQIEEAARLFIEMPE----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA 327
           +  +Q G I  A  LF  M E     N  +++ M+   + I       +++ +  Y++I 
Sbjct: 377 SGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVI-KTNYQHIP 435

Query: 328 -AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK 386
              TA+++ Y +    ++A  IF  I   DVV W+ M+  +AQ G  + A  LF +M  +
Sbjct: 436 FVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQ 495

Query: 387 DI----VTWNTMI-------AGYAQIRQMD----------------------------DA 407
            I     T +++I       AG  Q RQ                              D+
Sbjct: 496 GIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDS 555

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467
            +I  E    R+ VSWN++ISG+ Q+ + + A++ F  M   G + D  T    +  C H
Sbjct: 556 AQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTH 615

Query: 468 LAALQLGRQIHHLAIKSGYVNDLFVGNS-LITMYAKCGRIQNAELLFKDAD-PVDVISWN 525
              +  G+Q     ++   +N      + ++ +Y++ G++     L +D   P   + W 
Sbjct: 616 NGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWR 675

Query: 526 SLIAGYAINGN 536
           +L+    ++ N
Sbjct: 676 TLLGACRVHKN 686



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 130/276 (47%), Gaps = 17/276 (6%)

Query: 372 RMDEAINLFRQMVNKDIVTWNT--MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
           R   A+NL  + V K + T  +   +     +R    A    +E+ +R   V  N ++  
Sbjct: 14  RGKNAVNLAPEQVPKLLATRASPARVEDGVCLRDPPGARYPLDEIPRRDAAVGANRVLFD 73

Query: 430 FLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY-VN 488
           + +    L+ L  F +  + G   D +TL+C L AC  +    LG Q+H L +K G+   
Sbjct: 74  YARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRG 133

Query: 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMV 548
           ++  G SL+ MY KCG +     +F+     +V++W SL+ G A     +E + LF  M 
Sbjct: 134 EVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMR 193

Query: 549 MEGVAPDPVTFIGVLSACSHVGLVDGGLKL------FECMTEVYAIEPLVEHYACMIDLL 602
            EG+ P+P TF  VLSA +  G +D G ++      F C + V+    L+  YA      
Sbjct: 194 AEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYA------ 247

Query: 603 SRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQ 638
            + G +++A  +   M+ +     W TL+   ++++
Sbjct: 248 -KCGLVEDAKSVFNWMETRDMVS-WNTLMAGLQLNE 281



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 152/350 (43%), Gaps = 52/350 (14%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP----QRNL 77
           +    K G  E+A+ IF  + QK+ V +++M+S +A+ G    A  LF +M     + N 
Sbjct: 442 LASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNE 501

Query: 78  VSWNSMI-AGYLHNDKVKEAREL----FDKMFRPDLFSWALMITCYTRKGELEKARELFD 132
            + +S+I A    +  V + R+         +   +   + +++ Y+RKG ++ A+ +F+
Sbjct: 502 FTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFE 561

Query: 133 LLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGEMH 188
              ++ D   WN+M++GYA+ G   +A +    M +  I    V++ +++ G T NG + 
Sbjct: 562 RQTDR-DLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVV 620

Query: 189 LASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGR 248
              ++F++M     +  N  ++ Y  + DL                        Y+R G+
Sbjct: 621 EGQQYFDSMVRDHKI--NPTMEHYACMVDL------------------------YSRAGK 654

Query: 249 MLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQIEE---AARLFIEMPERNPVSWTTMIDG 304
           + E   L   MP     + W  ++ A      +E    +A   + +   +  ++  + + 
Sbjct: 655 LDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNI 714

Query: 305 YVRIAK---LDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK 351
           Y    K    DE R+L+D   Y+ +  +      ++Q K    +   FDK
Sbjct: 715 YAAAGKWKERDEVRKLMD---YRKVKKEAG--CSWIQIKNKVHSFIAFDK 759


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  324 bits (831), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 181/544 (33%), Positives = 306/544 (56%), Gaps = 12/544 (2%)

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYAR 245
           ++H  S    ++    V S  L L     +++L  A   F  I E  +VSW  ++  Y  
Sbjct: 33  QLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLVSWNLLIKCYIE 92

Query: 246 NGRMLEARRLF---------DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPV 296
           N R  +A  LF         D   +  V+   A + A +Q G+      L I       V
Sbjct: 93  NQRSNDAIALFCKLLCDFVPDSFTLPCVLKGCARLGA-LQEGKQIHGLVLKIGFGVDKFV 151

Query: 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHD 356
             ++++  Y +  +++  R++ D+M  K++ +  ++I GY +   ++ A ++F+++   D
Sbjct: 152 -LSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEKD 210

Query: 357 VVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
              W ++I G ++ G+++ A ++F +M  ++ V+WN MI GY +    + A ++F++M  
Sbjct: 211 SFSWTILIDGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQM-P 269

Query: 417 RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ 476
            R+ V+WN++I+G+ +N+    ALK+F +M +E    +++T+  A+SA + + +L  GR 
Sbjct: 270 ERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRW 329

Query: 477 IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGN 536
           +H   +KSG+  D  +G  LI MY+KCG +++A  +F+      +  W S+I G  ++G 
Sbjct: 330 VHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGL 389

Query: 537 ATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYA 596
             + ++LF+EM   G+ P  +TFIGVL+ACSH G  +   + F+ MT  Y I+P +EHY 
Sbjct: 390 VEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYG 449

Query: 597 CMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQ 656
           C+ID+L RAG L+EA + ++ M IK N  IW +LL   R H NI++G  A + L +L P 
Sbjct: 450 CLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPD 509

Query: 657 KTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCR 716
            T CY +LSNM+A AG W++V +VR  M+  G +K PGCS IE +  IH F+ GD    +
Sbjct: 510 TTGCYVILSNMYAAAGLWEKVRQVREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKSHPQ 569

Query: 717 TAEI 720
           T EI
Sbjct: 570 TEEI 573



 Score =  203 bits (517), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 139/485 (28%), Positives = 243/485 (50%), Gaps = 51/485 (10%)

Query: 45  NTVTYNSMISAYAKNGRVND---ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFD 101
           N  + +S + A   + R+N+   A  LF+ + +  LVSWN +I  Y+ N +  +A  LF 
Sbjct: 45  NHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFC 104

Query: 102 KM---FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNE 158
           K+   F PD F+   ++    R G L++ +++  L+                 KIG +  
Sbjct: 105 KLLCDFVPDSFTLPCVLKGCARLGALQEGKQIHGLV----------------LKIG-FGV 147

Query: 159 AKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDL 218
            K +L           +S++S Y+K GE+ L  K F+ ME++DVVSWN ++DGY    ++
Sbjct: 148 DKFVL-----------SSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEI 196

Query: 219 DSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278
           + A + F+++PE++  SW  ++ G +++G++  AR +FD+MPIRN V+WNAMI  Y++ G
Sbjct: 197 ELALEMFEEMPEKDSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAG 256

Query: 279 QIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM-------PYKNIAAQTA 331
               A  LF +MPER+ V+W +MI GY R  +  +A +L + M        Y  I    +
Sbjct: 257 DSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVS 316

Query: 332 MISGYVQNKRMDEANQIFDKIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
             SG V        +    K G   D V   ++I+ Y++CG +  A+ +FR +  K +  
Sbjct: 317 AASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGH 376

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMT 447
           W ++I G      ++  +++F+EM   G + + +++  +++      F  DA + F +MT
Sbjct: 377 WTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMT 436

Query: 448 QE-GKKADHSTLACALSACAHLAALQLGRQ-IHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
            + G K       C +        L+  +  I  + IK+  V    +  SL++   K G 
Sbjct: 437 YDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKV----IWTSLLSGSRKHGN 492

Query: 506 IQNAE 510
           I+  E
Sbjct: 493 IRMGE 497



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 189/373 (50%), Gaps = 26/373 (6%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWN 81
           ++   K G +E   K+F +M  K+ V++NS+I  YA+ G +  A ++FE+MP+++  SW 
Sbjct: 156 VSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEKDSFSWT 215

Query: 82  SMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTA 141
            +I G   + K++ AR++FD+M   +  SW  MI  Y + G+   A+ELFD +P +    
Sbjct: 216 ILIDGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPER-SLV 274

Query: 142 CWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV-SWNSMLSGYT-KNGEMHLA------SKF 193
            WN+M+ GY +   + +A KL + M  ++I  ++ ++L   +  +G + L       S  
Sbjct: 275 TWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYI 334

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEAR 253
            ++  + D V   L+++ Y +   + SA + F+ IP++ +  W +++ G   +G + +  
Sbjct: 335 VKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTL 394

Query: 254 RLFDQM------PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS-----WTTMI 302
            LFD+M      P  + + +  ++ A    G  E+A R F  M     +      +  +I
Sbjct: 395 ELFDEMCRTGLKP--HAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLI 452

Query: 303 DGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISGYVQ--NKRMDE-ANQIFDKIGTHDVV 358
           D   R   L+EA+  +++MP K N    T+++SG  +  N RM E A Q    +      
Sbjct: 453 DVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTTG 512

Query: 359 CWNVMIKGYAQCG 371
           C+ ++   YA  G
Sbjct: 513 CYVILSNMYAAAG 525


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 202/647 (31%), Positives = 328/647 (50%), Gaps = 59/647 (9%)

Query: 144 NAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFF-----EAME 198
           N ++  Y   G   +A KL D MP  N VS+ ++  G++++ +   A +       E  E
Sbjct: 42  NILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYE 101

Query: 199 ERDVVSWNLMLDGYVELDDLD---SAWKFFQKIPEQ-NVVSWVTMLSGYARNGRMLEARR 254
               V +  +L   V +D  D   S   +  K+  Q +      ++  Y+  G +  AR+
Sbjct: 102 VNQFV-FTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQ 160

Query: 255 LFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
           +FD +  +++V+W  M+A Y +    E++  LF +M           I   ++     EA
Sbjct: 161 VFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEA 220

Query: 315 RRL--------LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG 366
            ++        L     +++    A++  Y ++  + EA Q F+++   D++ W++MI  
Sbjct: 221 FKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISR 280

Query: 367 YAQCGRMDEAINLFRQM----------------------------------------VNK 386
           YAQ  +  EA+ LF +M                                        ++ 
Sbjct: 281 YAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDS 340

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446
           ++   N ++  YA+  +++++VK+F      +N V+WN +I G++Q      AL +F  M
Sbjct: 341 NVFVSNALMDVYAKCGEIENSVKLFTG-STEKNEVAWNTIIVGYVQLGDGEKALNLFSNM 399

Query: 447 TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI 506
                +    T +  L A A L AL+ GRQIH L IK+ Y  D  V NSLI MYAKCGRI
Sbjct: 400 LGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRI 459

Query: 507 QNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566
            +A L F   D  D +SWN+LI GY+I+G   EA+ LF+ M      P+ +TF+GVLSAC
Sbjct: 460 DDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSAC 519

Query: 567 SHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGI 626
           S+ GL+D G   F+ M + Y IEP +EHY CM+ LL R+G+ DEA +++  +  +P+  +
Sbjct: 520 SNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMV 579

Query: 627 WGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEG 686
           W  LLGAC +H+N+ LG++  +++ E+EPQ  + + LLSNM+A A RWD V  VR +M+ 
Sbjct: 580 WRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLSNMYATAKRWDNVAYVRKNMKK 639

Query: 687 SGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733
              +K+PG SW+E +  +H F  GD        I   L+ L  + R+
Sbjct: 640 KKVKKEPGLSWVENQGVVHYFTVGDTSHPNIKLIFAMLEWLYKKTRD 686



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 131/535 (24%), Positives = 220/535 (41%), Gaps = 117/535 (21%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDAR-------- 66
           +F QN  +      G +E+A K+F +M   NTV++ ++   ++++ +   AR        
Sbjct: 38  LFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFR 97

Query: 67  --------------KLFEQMP-----------------QRNLVSWNSMIAGYLHNDKVKE 95
                         KL   M                  Q +     ++I  Y     V  
Sbjct: 98  EGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDA 157

Query: 96  ARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL------PNKEDTACWNAMVAG 149
           AR++FD ++  D+ SW  M+ CY      E +  LF  +      PN       N  ++ 
Sbjct: 158 ARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPN-------NFTISA 210

Query: 150 YAKIGNYNEAKKL--------LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201
             K  N  EA K+        L     +++    ++L  YTK+GE+  A +FFE M + D
Sbjct: 211 ALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDD 270

Query: 202 VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV-----SWVTMLSGYARNGRMLEARRLF 256
           ++ W+LM+  Y + D    A + F ++ + +VV     ++ ++L   A     L    L 
Sbjct: 271 LIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACAS----LVLLNLG 326

Query: 257 DQMPI--------RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRI 308
           +Q+           NV   NA++  Y + G+IE + +LF    E+N V+W T+I GYV++
Sbjct: 327 NQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQL 386

Query: 309 AKLDEARRLLDQMPYKNIAAQTAMISGYVQNK----RMDEANQI----FDKIGTHDVVCW 360
              ++A  L   M   +I       S  ++       ++   QI       +   D V  
Sbjct: 387 GDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVA 446

Query: 361 NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT 420
           N +I  YA+CGR+D+A   F +M  +D V+WN +I GY+                     
Sbjct: 447 NSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYS--------------------- 485

Query: 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475
                 I G       ++AL +F +M Q   K +  T    LSAC++   L  GR
Sbjct: 486 ------IHG-----LGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGR 529



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 167/351 (47%), Gaps = 59/351 (16%)

Query: 51  SMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----- 105
           +++  Y K+G + +A++ FE+MP+ +L+ W+ MI+ Y  +DK KEA ELF +M +     
Sbjct: 245 ALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVV 304

Query: 106 PDLFSWALMI----------------TC-------------------YTRKGELEKAREL 130
           P+ F++A ++                +C                   Y + GE+E + +L
Sbjct: 305 PNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKL 364

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGYTKNGE 186
           F     K + A WN ++ GY ++G+  +A  L   M   +I    V+++S+L        
Sbjct: 365 FTGSTEKNEVA-WNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVA 423

Query: 187 M----HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSG 242
           +     + S   + M  +D V  N ++D Y +   +D A   F K+ +Q+ VSW  ++ G
Sbjct: 424 LEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICG 483

Query: 243 YARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVS- 297
           Y+ +G  +EA  LFD M   N     + +  +++A    G +++    F  M +   +  
Sbjct: 484 YSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEP 543

Query: 298 ----WTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMD 343
               +T M+    R  + DEA +L+ ++P++ ++    A++   V +K +D
Sbjct: 544 CIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLD 594



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 110/491 (22%), Positives = 203/491 (41%), Gaps = 92/491 (18%)

Query: 29  GRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMP--------------- 73
           G V+ A ++F  +  K+ V++  M++ YA+N    D+  LF QM                
Sbjct: 153 GNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAAL 212

Query: 74  ------------------------QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF 109
                                    R+L    +++  Y  + ++ EA++ F++M + DL 
Sbjct: 213 KSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLI 272

Query: 110 SWALMITCYTRKGELEKARELFD-------LLPNKEDTACWNAMVAGYA--KIGNYNEAK 160
            W+LMI+ Y +  + ++A ELF        ++PN    A      A      +GN   + 
Sbjct: 273 PWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSC 332

Query: 161 KLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDS 220
            L   + S   VS N+++  Y K GE+  + K F    E++ V+WN ++ GYV+L D + 
Sbjct: 333 VLKVGLDSNVFVS-NALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEK 391

Query: 221 AWKFFQKIPEQNV----VSWVTMLSGYA-----RNGRMLEARRLFDQMPIRNVVAWNAMI 271
           A   F  +   ++    V++ ++L   A       GR + +  +   M  ++ V  N++I
Sbjct: 392 ALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTI-KTMYNKDSVVANSLI 450

Query: 272 AAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTA 331
             Y + G+I++A   F +M +++ VSW  +I GY       EA  L D M   N      
Sbjct: 451 DMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKL 510

Query: 332 MISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM-----VNK 386
              G                           ++   +  G +D+    F+ M     +  
Sbjct: 511 TFVG---------------------------VLSACSNAGLLDKGRAHFKSMLQDYGIEP 543

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446
            I  +  M+    +  Q D+AVK+  E+  + + + W AL+   + ++ +LD  K+    
Sbjct: 544 CIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHK-NLDLGKVCAQR 602

Query: 447 TQEGKKADHST 457
             E +  D +T
Sbjct: 603 VLEMEPQDDAT 613



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 136/289 (47%), Gaps = 22/289 (7%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           N    N+++  YAK G + ++ KLF    ++N V+WN++I GY+     ++A  LF  M 
Sbjct: 341 NVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNML 400

Query: 105 ----RPDLFSWALMITCYTRKGELEKARELFDL----LPNKEDTACWNAMVAGYAKIGNY 156
               +P   +++ ++        LE  R++  L    + NK D+   N+++  YAK G  
Sbjct: 401 GLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNK-DSVVANSLIDMYAKCGRI 459

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELD 216
           ++A+   D M  ++ VSWN+++ GY+ +G    A   F+ M++ +     L   G +   
Sbjct: 460 DDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSAC 519

Query: 217 D----LDSAWKFFQKI-----PEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVA 266
                LD     F+ +      E  +  +  M+    R+G+  EA +L  ++P + +V+ 
Sbjct: 520 SNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMV 579

Query: 267 WNAMIAAYVQRGQIE---EAARLFIEMPERNPVSWTTMIDGYVRIAKLD 312
           W A++ A V    ++     A+  +EM  ++  +   + + Y    + D
Sbjct: 580 WRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLSNMYATAKRWD 628



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 111/241 (46%), Gaps = 2/241 (0%)

Query: 378 NLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHL 437
           ++ +   + D+   N ++  Y     ++DA K+F+EM    NTVS+  L  GF ++    
Sbjct: 28  HILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEM-PLTNTVSFVTLAQGFSRSHQFQ 86

Query: 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLI 497
            A ++ + + +EG + +       L     +        +H    K G+  D FVG +LI
Sbjct: 87  RARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALI 146

Query: 498 TMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557
             Y+ CG +  A  +F      D++SW  ++A YA N    +++ LF +M + G  P+  
Sbjct: 147 DAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNF 206

Query: 558 TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKG 617
           T    L +C+ +     G  +  C  +V     L    A +++L +++G + EA +  + 
Sbjct: 207 TISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIA-LLELYTKSGEIAEAQQFFEE 265

Query: 618 M 618
           M
Sbjct: 266 M 266



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 104/199 (52%), Gaps = 15/199 (7%)

Query: 27  KSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86
           + GR   ++ I   M  K++V  NS+I  YAK GR++DAR  F++M +++ VSWN++I G
Sbjct: 425 EPGRQIHSLTI-KTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICG 483

Query: 87  YLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELF-DLLPNKEDTA 141
           Y  +    EA  LFD M     +P+  ++  +++  +  G L+K R  F  +L +     
Sbjct: 484 YSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEP 543

Query: 142 C---WNAMVAGYAKIGNYNEAKKLLDAMPSK-NIVSWNSMLSGYTKNGEMHL----ASKF 193
           C   +  MV    + G ++EA KL+  +P + +++ W ++L     +  + L    A + 
Sbjct: 544 CIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRV 603

Query: 194 FEAMEERDVVSWNLMLDGY 212
            E ME +D  +  L+ + Y
Sbjct: 604 LE-MEPQDDATHVLLSNMY 621



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 76/155 (49%), Gaps = 11/155 (7%)

Query: 4   SLKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVN 63
           ++K++ NK S V   N  I    K GR+++A   F +M +++ V++N++I  Y+ +G   
Sbjct: 434 TIKTMYNKDSVV--ANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGM 491

Query: 64  DARKLFEQMPQRNL----VSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALM 114
           +A  LF+ M Q N     +++  +++   +   + + R  F  M +     P +  +  M
Sbjct: 492 EALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCM 551

Query: 115 ITCYTRKGELEKARELFDLLPNKEDTACWNAMVAG 149
           +    R G+ ++A +L   +P +     W A++  
Sbjct: 552 VWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGA 586


>gi|15240572|ref|NP_200385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171613|sp|Q9FM64.1|PP431_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g55740, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 21; Flags: Precursor
 gi|9758608|dbj|BAB09241.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332009292|gb|AED96675.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 830

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 215/776 (27%), Positives = 384/776 (49%), Gaps = 78/776 (10%)

Query: 21  KITQLGKSGRVEEAIKIFSQMSQKN----TVTYNSMISAYAKNGRVNDARKLFEQMPQ-- 74
           +++ L K+G ++EA+ + ++M  +N       Y  ++        ++  +++  ++ +  
Sbjct: 41  RVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLSTGKQIHARILKNG 100

Query: 75  ----RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKA--- 127
               RN      ++  Y   D ++ A  LF K+   ++FSWA +I    R G  E A   
Sbjct: 101 DFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMG 160

Query: 128 ------RELFD---LLPNKEDTAC----WNAMVAG-----------------------YA 151
                  E+F    ++PN    AC    W+    G                       Y 
Sbjct: 161 FVEMLENEIFPDNFVVPNV-CKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYG 219

Query: 152 KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLD- 210
           K G  ++A K+ D +P +N V+WN+++ GY +NG+   A + F  M ++ V    + +  
Sbjct: 220 KCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGVEPTRVTVST 279

Query: 211 --------GYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR 262
                   G VE      A      +   N++   ++L+ Y + G +  A  +FD+M  +
Sbjct: 280 CLSASANMGGVEEGKQSHAIAIVNGMELDNILG-TSLLNFYCKVGLIEYAEMVFDRMFEK 338

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLF----IEMPERNPVSWTTMIDGYVRIAKLDEARRL- 317
           +VV WN +I+ YVQ+G +E+A  +     +E  + + V+  T++    R   L   + + 
Sbjct: 339 DVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQ 398

Query: 318 ---LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMD 374
              +      +I   + ++  Y +   + +A ++FD     D++ WN ++  YA+ G   
Sbjct: 399 CYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSG 458

Query: 375 EAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALI 427
           EA+ LF  M    V  +++TWN +I    +  Q+D+A  +F +M   G   N +SW  ++
Sbjct: 459 EALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMM 518

Query: 428 SGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV 487
           +G +QN    +A+     M + G + +  ++  ALSACAHLA+L +GR IH   I++   
Sbjct: 519 NGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAHLASLHIGRTIHGYIIRNLQH 578

Query: 488 NDLF-VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEE 546
           + L  +  SL+ MYAKCG I  AE +F      ++   N++I+ YA+ GN  EAI L+  
Sbjct: 579 SSLVSIETSLVDMYAKCGDINKAEKVFGSKLYSELPLSNAMISAYALYGNLKEAIALYRS 638

Query: 547 MVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAG 606
           +   G+ PD +T   VLSAC+H G ++  +++F  +    +++P +EHY  M+DLL+ AG
Sbjct: 639 LEGVGLKPDNITITNVLSACNHAGDINQAIEIFTDIVSKRSMKPCLEHYGLMVDLLASAG 698

Query: 607 RLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSN 666
             ++A  +++ M  KP+A +  +L+ +C   +  +L      KL E EP+ +  Y  +SN
Sbjct: 699 ETEKALRLIEEMPFKPDARMIQSLVASCNKQRKTELVDYLSRKLLESEPENSGNYVTISN 758

Query: 667 MHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQ--IHTFLSGDPKQCRTAEI 720
            +A  G WDEV K+R  M+  G +K+PGCSWI++  +  +H F++ D    R  EI
Sbjct: 759 AYAVEGSWDEVVKMREMMKAKGLKKKPGCSWIQITGEEGVHVFVANDKTHTRINEI 814



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 141/588 (23%), Positives = 267/588 (45%), Gaps = 56/588 (9%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM-- 72
           VF  +      GK G +++A K+F ++  +N V +N+++  Y +NG+  +A +LF  M  
Sbjct: 208 VFVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRK 267

Query: 73  ----PQRNLVSW---NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELE 125
               P R  VS     S   G +   K   A  + + M   ++   +L+   Y + G +E
Sbjct: 268 QGVEPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLL-NFYCKVGLIE 326

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGY 181
            A  +FD +  K D   WN +++GY + G   +A  +   M  + +    V+  +++S  
Sbjct: 327 YAEMVFDRMFEK-DVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAA 385

Query: 182 TKNGEMHLASKF----FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV 237
            +   + L  +          E D+V  + ++D Y +   +  A K F    E++++ W 
Sbjct: 386 ARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTVEKDLILWN 445

Query: 238 TMLSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           T+L+ YA +G   EA RLF  M +     NV+ WN +I + ++ GQ++EA  +F++M   
Sbjct: 446 TLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSS 505

Query: 294 ----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYK----NIAAQTAMISGYVQNKRMDEA 345
               N +SWTTM++G V+    +EA   L +M       N  + T  +S       +   
Sbjct: 506 GIIPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVALSACAHLASLHIG 565

Query: 346 NQIFDKI-----GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQ 400
             I   I      +  V     ++  YA+CG +++A  +F   +  ++   N MI+ YA 
Sbjct: 566 RTIHGYIIRNLQHSSLVSIETSLVDMYAKCGDINKAEKVFGSKLYSELPLSNAMISAYAL 625

Query: 401 IRQMDDAVKIF---EEMGKRRNTVSWNALISGFLQNEFHLDALKIFV-LMTQEGKKA--D 454
              + +A+ ++   E +G + + ++   ++S          A++IF  ++++   K   +
Sbjct: 626 YGNLKEAIALYRSLEGVGLKPDNITITNVLSACNHAGDINQAIEIFTDIVSKRSMKPCLE 685

Query: 455 HSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL-- 512
           H  L   L A A      L R I  +  K     D  +  SL+   A C + +  EL+  
Sbjct: 686 HYGLMVDLLASAGETEKAL-RLIEEMPFKP----DARMIQSLV---ASCNKQRKTELVDY 737

Query: 513 ----FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
                 +++P +  ++ ++   YA+ G+  E +K+ E M  +G+   P
Sbjct: 738 LSRKLLESEPENSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKKP 785



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 4/225 (1%)

Query: 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468
           K  +E     ++ S+   +S   +N    +AL +   M     +         L  C + 
Sbjct: 24  KHHDEQAHSPSSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVYE 83

Query: 469 AALQLGRQIHHLAIKSG--YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNS 526
             L  G+QIH   +K+G  Y  + ++   L+  YAKC  ++ AE+LF      +V SW +
Sbjct: 84  RDLSTGKQIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAA 143

Query: 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVY 586
           +I      G    A+  F EM+   + PD      V  AC  +     G  +   + +  
Sbjct: 144 IIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVK-S 202

Query: 587 AIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
            +E  V   + + D+  + G LD+A ++   +  + NA  W  L+
Sbjct: 203 GLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDR-NAVAWNALM 246



 Score = 52.8 bits (125), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 16/202 (7%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V  +   +    K G + +A K+F           N+MISAYA  G + +A  L+  +
Sbjct: 580 SLVSIETSLVDMYAKCGDINKAEKVFGSKLYSELPLSNAMISAYALYGNLKEAIALYRSL 639

Query: 73  PQRNLVSWNSMIAGYL----HNDKVKEARELF-----DKMFRPDLFSWALMITCYTRKGE 123
               L   N  I   L    H   + +A E+F      +  +P L  + LM+      GE
Sbjct: 640 EGVGLKPDNITITNVLSACNHAGDINQAIEIFTDIVSKRSMKPCLEHYGLMVDLLASAGE 699

Query: 124 LEKARELFDLLPNKEDTACWNAMVAGYAK-----IGNYNEAKKLLDAMPSKNIVSWNSML 178
            EKA  L + +P K D     ++VA   K     + +Y  ++KLL++ P +N  ++ ++ 
Sbjct: 700 TEKALRLIEEMPFKPDARMIQSLVASCNKQRKTELVDY-LSRKLLESEP-ENSGNYVTIS 757

Query: 179 SGYTKNGEMHLASKFFEAMEER 200
           + Y   G      K  E M+ +
Sbjct: 758 NAYAVEGSWDEVVKMREMMKAK 779


>gi|297824945|ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297326194|gb|EFH56614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 599

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 177/504 (35%), Positives = 293/504 (58%), Gaps = 14/504 (2%)

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW 298
           ++  Y + G+ ++A ++FDQM +RN+ +WN M++ +V+ G +  A  +F  MPER+ VSW
Sbjct: 88  LIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGFVKSGMLVRARVVFDSMPERDVVSW 147

Query: 299 TTMIDGYVRIAKLDEARRLLDQMPYKNIA----AQTAMISGYVQNKRMDEANQIFDKIGT 354
            TM+ GY +   L EA     ++    I     +   +++  V+++++    Q   ++  
Sbjct: 148 NTMVIGYAQDGNLHEALWFFKELRRSGIKFNEFSFAGLLTACVKSRQLQLNQQAHGQVLV 207

Query: 355 ----HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKI 410
                +VV    +I  YA+CG+M+ A   F +M  KDI  W T+I+GYA++  M+ A K+
Sbjct: 208 AGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAADKL 267

Query: 411 FEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAA 470
           F EM ++ N VSW ALI+G+++      AL +F  M     K +  T +  L A A +A+
Sbjct: 268 FREMPEK-NPVSWTALIAGYVRQGSGDLALDLFRKMIAMRVKPEQFTFSSCLCASASIAS 326

Query: 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDA-DPVDVISWNSLIA 529
           L+ G+QIH   I++    +  V +SLI MY+K G ++ +E +F+   D  D + WN++I+
Sbjct: 327 LRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSKSGSLEASERVFRICYDKQDCVLWNTMIS 386

Query: 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIE 589
             A +G   +A+++ ++M+   V P+  T + +L+ACSH GLV+ G++ FE MT  + I 
Sbjct: 387 ALAQHGLGHKALQMLDDMIKFRVHPNRTTLVVILNACSHSGLVEEGVRWFESMTVQHGIV 446

Query: 590 PLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649
           P  EHYAC+IDLL RAG   E    ++ M  +P+  IW  +LG CR+H N +LG+ A E+
Sbjct: 447 PDQEHYACLIDLLGRAGCFKELMSKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAAEE 506

Query: 650 LSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLS 709
           L +L+P+ ++ Y LLS+++A+ G+W+ VEK+R  M+     K+   SWIE++N++  F  
Sbjct: 507 LIKLDPESSAPYILLSSIYADHGKWELVEKLRGIMKKRRVNKEKAVSWIEIENKVKAFTV 566

Query: 710 GDPK----QCRTAEICNTLKTLAA 729
            D        R  EI   L  LAA
Sbjct: 567 SDGSHAHAHARKEEIYFILHNLAA 590



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 129/475 (27%), Positives = 216/475 (45%), Gaps = 93/475 (19%)

Query: 137 KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEA 196
           + +T   N ++  Y K G   +A K+ D M  +N+ SWN+M+SG+ K+G +  A   F++
Sbjct: 79  RPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGFVKSGMLVRARVVFDS 138

Query: 197 MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ------------------------- 231
           M ERDVVSWN M+ GY +  +L  A  FF+++                            
Sbjct: 139 MPERDVVSWNTMVIGYAQDGNLHEALWFFKELRRSGIKFNEFSFAGLLTACVKSRQLQLN 198

Query: 232 --------------NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQR 277
                         NVV   +++  YA+ G+M  A+R FD+M ++++  W  +I+ Y + 
Sbjct: 199 QQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKL 258

Query: 278 GQIEEAARLFIEMPERNPVSWTTMIDGYVRIAK----LDEARRLL------DQMPYKNIA 327
           G +E A +LF EMPE+NPVSWT +I GYVR       LD  R+++      +Q  + +  
Sbjct: 259 GDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIAMRVKPEQFTFSSCL 318

Query: 328 AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK- 386
             +A I+     K++     I   +  + +V  + +I  Y++ G ++ +  +FR   +K 
Sbjct: 319 CASASIASLRHGKQI-HGYMIRTNVRPNAIVT-SSLIDMYSKSGSLEASERVFRICYDKQ 376

Query: 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446
           D V WNTMI+  AQ      A+++ ++M K R                            
Sbjct: 377 DCVLWNTMISALAQHGLGHKALQMLDDMIKFR---------------------------- 408

Query: 447 TQEGKKADHSTLACALSACAHLAALQLG-RQIHHLAIKSGYVNDLFVGNSLITMYAKCGR 505
                  + +TL   L+AC+H   ++ G R    + ++ G V D      LI +  + G 
Sbjct: 409 ----VHPNRTTLVVILNACSHSGLVEEGVRWFESMTVQHGIVPDQEHYACLIDLLGRAGC 464

Query: 506 IQNAELLFKDAD-PV--DVISWNSLIAGYAINGNATEAIKLFEEMVM---EGVAP 554
            +  EL+ K  + P   D   WN+++    I+GN     K  EE++    E  AP
Sbjct: 465 FK--ELMSKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAAEELIKLDPESSAP 517



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 167/337 (49%), Gaps = 24/337 (7%)

Query: 5   LKSIGNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVND 64
           LK  G K       N  I    K G+  +A K+F QM  +N  ++N+M+S + K+G +  
Sbjct: 72  LKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGFVKSGMLVR 131

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDL----FSWALMITCYTR 120
           AR +F+ MP+R++VSWN+M+ GY  +  + EA   F ++ R  +    FS+A ++T   +
Sbjct: 132 ARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKELRRSGIKFNEFSFAGLLTACVK 191

Query: 121 KGELE-----KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN 175
             +L+       + L     +    +C  +++  YAK G    AK+  D M  K+I  W 
Sbjct: 192 SRQLQLNQQAHGQVLVAGFLSNVVLSC--SIIDAYAKCGQMESAKRCFDEMTVKDIHIWT 249

Query: 176 SMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKI------P 229
           +++SGY K G+M  A K F  M E++ VSW  ++ GYV     D A   F+K+      P
Sbjct: 250 TLISGYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIAMRVKP 309

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNV----VAWNAMIAAYVQRGQIEEAAR 285
           EQ   S  + L   A    +   +++   M   NV    +  +++I  Y + G +E + R
Sbjct: 310 EQFTFS--SCLCASASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSKSGSLEASER 367

Query: 286 LF-IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
           +F I   +++ V W TMI    +     +A ++LD M
Sbjct: 368 VFRICYDKQDCVLWNTMISALAQHGLGHKALQMLDDM 404



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 109/248 (43%), Gaps = 46/248 (18%)

Query: 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIH-HLAIKSGYVNDLFVGNSLITMYAKCG 504
           +TQ+G +     LA  L  C    +L+ G+ IH HL I      +  + N LI MY KCG
Sbjct: 37  LTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCG 96

Query: 505 R-------------------------------IQNAELLFKDADPVDVISWNSLIAGYAI 533
           +                               +  A ++F      DV+SWN+++ GYA 
Sbjct: 97  KPIDACKVFDQMHLRNLYSWNNMVSGFVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQ 156

Query: 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVE 593
           +GN  EA+  F+E+   G+  +  +F G+L+AC    +    L+L +       +   + 
Sbjct: 157 DGNLHEALWFFKELRRSGIKFNEFSFAGLLTAC----VKSRQLQLNQQAHGQVLVAGFLS 212

Query: 594 H--YAC-MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI-AVEK 649
           +   +C +ID  ++ G+++ A      M +K +  IW TL+         KLG + A +K
Sbjct: 213 NVVLSCSIIDAYAKCGQMESAKRCFDEMTVK-DIHIWTTLISG-----YAKLGDMEAADK 266

Query: 650 LSELEPQK 657
           L    P+K
Sbjct: 267 LFREMPEK 274



 Score = 47.0 bits (110), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 87/205 (42%), Gaps = 24/205 (11%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQK-NTVTYNSMISAYAKNGRVNDARKLFEQM----PQRN 76
           I    KSG +E + ++F     K + V +N+MISA A++G  + A ++ + M       N
Sbjct: 353 IDMYSKSGSLEASERVFRICYDKQDCVLWNTMISALAQHGLGHKALQMLDDMIKFRVHPN 412

Query: 77  LVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELF 131
             +   ++    H+  V+E    F+ M       PD   +A +I    R G  ++     
Sbjct: 413 RTTLVVILNACSHSGLVEEGVRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMSKI 472

Query: 132 DLLPNKEDTACWNAMVAGYAKIGNYNEAKKL------LDAMPSKNIVSWNSMLSGYTKNG 185
           + +P + D   WNA++      GN    KK       LD   S   +  +S+   Y  +G
Sbjct: 473 EEMPFEPDKHIWNAILGVCRIHGNEELGKKAAEELIKLDPESSAPYILLSSI---YADHG 529

Query: 186 EMHLASKFFEAMEERDV-----VSW 205
           +  L  K    M++R V     VSW
Sbjct: 530 KWELVEKLRGIMKKRRVNKEKAVSW 554


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 215/735 (29%), Positives = 360/735 (48%), Gaps = 86/735 (11%)

Query: 52  MISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR----PD 107
           ++++Y   G  +DA  + E++     V WN ++  ++   ++  A  +  +M R    PD
Sbjct: 89  VVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPD 148

Query: 108 LFSWALMI-TCYTRKGELEKARE------LFDLLPNKEDTACWNAMVAGYAKIGNYNEAK 160
            F+    +  C    GEL   R       L      + +    NA+VA Y++ G+  +A 
Sbjct: 149 HFTLPYALKAC----GELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDAS 204

Query: 161 KLLDAMPSK---NIVSWNSMLSGYTKNGEMHLASKFFEAM----------EERDVVSWNL 207
            + D +  K   +++SWNS+++ + K      A   F  M          E  D++S   
Sbjct: 205 LVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVN 264

Query: 208 MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYA-RNGRMLEARRLFDQMPIRNVVA 266
           +L     L          + +P+   +        YA RNG   +A              
Sbjct: 265 ILPACASL----------KALPQTKEIH------SYAIRNGTFADA------------FV 296

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
            NA+I  Y + G +++A  +F  M  ++ VSW  M+ GY +  K   A  L   M  +NI
Sbjct: 297 CNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENI 356

Query: 327 AAQ----TAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAIN 378
                  +A+I+GY Q     EA   F ++  +    + V    ++   A  G + + + 
Sbjct: 357 PLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGME 416

Query: 379 LFRQMVNK----------------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR-RNTV 421
                + K                D+V  N +I  Y++ R    A  IF  + +R RN V
Sbjct: 417 THAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVV 476

Query: 422 SWNALISGFLQNEFHLDALKIFVLMTQE--GKKADHSTLACALSACAHLAALQLGRQIHH 479
           +W  +I G+ Q     DALK+F  M  +      +  T++C L ACAHL++L++G+QIH 
Sbjct: 477 TWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHA 536

Query: 480 LAIKSG-YVNDL-FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNA 537
              +   Y + + FV N LI MY+KCG +  A  +F      + +SW S+++GY ++G  
Sbjct: 537 YVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRG 596

Query: 538 TEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYAC 597
            EA+ +F++M   G  PD ++F+ +L ACSH G+VD GL  F+ M   Y +    +HYAC
Sbjct: 597 KEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYAC 656

Query: 598 MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK 657
           +IDLL+R+GRLD+A++ ++ M ++P+A IW  LL ACR+H N++L   A+ KL  ++ + 
Sbjct: 657 VIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNKLVSMKAEN 716

Query: 658 TSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRT 717
              Y L+SN++A A RW +V ++R  M+ SG +K+PGCSW++ K    +F  GD     +
Sbjct: 717 DGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLS 776

Query: 718 AEICNTLKTLAAQIR 732
            EI + L+ L  +I+
Sbjct: 777 PEIYSLLERLIGRIK 791



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 109/431 (25%), Positives = 206/431 (47%), Gaps = 60/431 (13%)

Query: 43  QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR---NLVSWNSMIAGYLHNDKVKEAREL 99
           + N    N++++ Y+++G + DA  +F+++ ++   +++SWNS++A ++     + A +L
Sbjct: 181 ESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDL 240

Query: 100 FDKMF----------RPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAM 146
           F +M           R D+ S   ++        L + +E+           D    NA+
Sbjct: 241 FSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNAL 300

Query: 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DV 202
           +  YAK G+  +A  + + M  K++VSWN+M++GYT++G+   A + F+ M +     DV
Sbjct: 301 IDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDV 360

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKI----PEQNVVSWVTMLSGYARNGRMLEARRLF-- 256
           ++W+ ++ GY +      A   FQ++     E N V+ +++LS  A  G + +       
Sbjct: 361 ITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAY 420

Query: 257 --------------DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP--ERNPVSWTT 300
                               ++V  NA+I  Y +    + A  +F  +P  ERN V+WT 
Sbjct: 421 SLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTV 480

Query: 301 MIDGYVRIAKLDEARRLLDQM---PYKNIAAQTAMIS------GYVQNKRMDEANQIFDK 351
           MI GY +    ++A +L  +M   PY  +A     IS       ++ + RM +  QI   
Sbjct: 481 MIGGYAQYGDSNDALKLFSEMISKPYA-VAPNAYTISCILMACAHLSSLRMGK--QIHAY 537

Query: 352 IGTHD------VVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMD 405
           +  H           N +I  Y++CG +D A N+F  M  ++ V+W +M++GY    +  
Sbjct: 538 VTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGK 597

Query: 406 DAVKIFEEMGK 416
           +A+ IF++M K
Sbjct: 598 EALDIFDKMQK 608



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 125/521 (23%), Positives = 218/521 (41%), Gaps = 114/521 (21%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQK---NTVTYNSMISAYAKNGRVNDARKLF 69
           S VF  N  +    +SG +E+A  +F ++++K   + +++NS+++A+ K      A  LF
Sbjct: 182 SNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLF 241

Query: 70  EQMP----------QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWAL----MI 115
            +M           + +++S  +++        + + +E+     R   F+ A     +I
Sbjct: 242 SEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALI 301

Query: 116 TCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI---- 171
             Y + G ++ A  +F+++  K D   WNAMV GY + G +  A +L   M  +NI    
Sbjct: 302 DTYAKCGSMKDAVNVFNVMEFK-DVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDV 360

Query: 172 VSWNSMLSGYTKNGEMHLASKFFEAM-----EERDV------------------------ 202
           ++W+++++GY + G    A   F+ M     E   V                        
Sbjct: 361 ITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAY 420

Query: 203 ----------------------VSWNLMLDGYVELDDLDSAWKFFQKIP--EQNVVSWVT 238
                                 V  N ++D Y +     +A   F  IP  E+NVV+W  
Sbjct: 421 SLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTV 480

Query: 239 MLSGYARNGRMLEARRLFDQMPIRN-VVAWNA--------------------MIAAYVQR 277
           M+ GYA+ G   +A +LF +M  +   VA NA                     I AYV R
Sbjct: 481 MIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTR 540

Query: 278 GQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYV 337
               E++  F+            +ID Y +   +D AR + D MP +N  + T+M+SGY 
Sbjct: 541 HHEYESSVYFVA---------NCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYG 591

Query: 338 QNKRMDEANQIFDKIG----THDVVCWNVMIKGYAQCGRMDEAINLFRQM-----VNKDI 388
            + R  EA  IFDK+       D + + V++   +  G +D+ ++ F  M     V    
Sbjct: 592 MHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASA 651

Query: 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429
             +  +I   A+  ++D A K  +EM    +   W AL+S 
Sbjct: 652 QHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSA 692



 Score = 92.4 bits (228), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 149/321 (46%), Gaps = 28/321 (8%)

Query: 47  VTYNSMISAYAKNGRVNDARKLFEQMP--QRNLVSWNSMIAGYLHNDKVKEARELFDKMF 104
           V +N++I  Y+K      AR +F  +P  +RN+V+W  MI GY       +A +LF +M 
Sbjct: 443 VVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMI 502

Query: 105 R------PDLFSWALMITCYTRKGELEKARELFDLLP--NKEDTACW---NAMVAGYAKI 153
                  P+ ++ + ++        L   +++   +   ++ +++ +   N ++  Y+K 
Sbjct: 503 SKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKC 562

Query: 154 GNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLML 209
           G+ + A+ + D+MP +N VSW SM+SGY  +G    A   F+ M++     D +S+ ++L
Sbjct: 563 GDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLL 622

Query: 210 DGYVELDDLDSAWKFFQKI-PEQNVVS----WVTMLSGYARNGRMLEARRLFDQMPIRNV 264
                   +D    +F  +  +  V++    +  ++   AR+GR+ +A +   +MP+   
Sbjct: 623 YACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPS 682

Query: 265 VA-WNAMIAAYVQRGQI---EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQ 320
            A W A+++A      +   E A    + M   N  S+T + + Y    +  +  R+   
Sbjct: 683 AAIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQL 742

Query: 321 MPYKNIAAQTAMISGYVQNKR 341
           M    I  +      +VQ K+
Sbjct: 743 MKKSGIKKRPG--CSWVQGKK 761



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 11/168 (6%)

Query: 11  KGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFE 70
           + S  F  N  I    K G V+ A  +F  M ++N V++ SM+S Y  +GR  +A  +F+
Sbjct: 545 ESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFD 604

Query: 71  QMPQRNLV----SWNSMIAGYLHNDKVKEARELFDKMFRPDLF------SWALMITCYTR 120
           +M +   V    S+  ++    H+  V +  + FD M R D         +A +I    R
Sbjct: 605 KMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIM-RSDYGVIASAQHYACVIDLLAR 663

Query: 121 KGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS 168
            G L+KA +    +P +   A W A+++      N   A+  L+ + S
Sbjct: 664 SGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNKLVS 711



 Score = 43.9 bits (102), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 1/126 (0%)

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
           YV+   +G  ++  Y  CG   +A  + +   P   + WN L+  +   G    AI +  
Sbjct: 79  YVSPKSLGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSC 138

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRA 605
            M+  G  PD  T    L AC  +     G   F  +      E  V     ++ + SR+
Sbjct: 139 RMLRAGTKPDHFTLPYALKACGELPSYRSG-SAFHGLICCNGFESNVFVCNALVAMYSRS 197

Query: 606 GRLDEA 611
           G L++A
Sbjct: 198 GSLEDA 203


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 184/545 (33%), Positives = 293/545 (53%), Gaps = 58/545 (10%)

Query: 235 SWVTMLSGYARNGRMLEARRLF-DQMPIRNVVAWNAMIAAYVQRG------QIEEAARLF 287
           S  ++++ Y++ G+M EA  +F D    RNV A+NA+I+ +V  G      Q  +  RL 
Sbjct: 48  SITSLINMYSKCGQMGEAILVFYDPCHERNVFAYNAIISGFVSNGLASKGFQFYKKMRLE 107

Query: 288 IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK-NIAAQTAMISGYVQNKRMDEAN 346
             MP++   ++  ++     + ++ +    L +M  + ++   +A+++ Y++N  M++A 
Sbjct: 108 GVMPDK--YTFPCVVRTCCEVMEVKKIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQ 165

Query: 347 QIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIV----------------- 389
           ++F ++   DVV WN MI GYA+ G +DEA+ +FR+M  K +                  
Sbjct: 166 KVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRG 225

Query: 390 ----------------------TWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALI 427
                                   N +I  Y + + + DA+ IFE M   ++  SWN++I
Sbjct: 226 DLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFE-MINEKDIFSWNSII 284

Query: 428 SGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI----- 482
           S   Q   H   L++F  M   G   D  T+   L AC+HLAAL  GR+IH   I     
Sbjct: 285 SVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREIHGYMIINGLG 344

Query: 483 ---KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATE 539
              ++G V++L V N+++ MYAKCG + NA  +F      DV SWN +I GY ++G A E
Sbjct: 345 KDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDVASWNIMIMGYGMHGYALE 404

Query: 540 AIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMI 599
           A+ +F +M      P+ VT +GVLSAC+H G V  G      M   + + P +EHY C+I
Sbjct: 405 ALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVSHGRLFLAQMESTFGVIPTIEHYTCVI 464

Query: 600 DLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTS 659
           D+L RAG L++A+E+V+ M I+ N  +W  LLGACR+H N +L  IA  ++ +LEP+   
Sbjct: 465 DMLGRAGHLEDAYEIVQKMPIQANPVVWRALLGACRLHGNAELAEIAARQVLQLEPEHCG 524

Query: 660 CYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAE 719
            Y L+SN++   GR++EV +VR +M+    +K PGCSWIE+K+ +H F +GD        
Sbjct: 525 SYVLMSNVYGVIGRYEEVLEVRKTMKEQNVKKTPGCSWIELKDGVHVFRTGDRTHSELNA 584

Query: 720 ICNTL 724
           + N L
Sbjct: 585 LTNQL 589



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 173/365 (47%), Gaps = 29/365 (7%)

Query: 48  TYNSMISAYAKNGRVNDARKLF-EQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM--- 103
           +  S+I+ Y+K G++ +A  +F +   +RN+ ++N++I+G++ N    +  + + KM   
Sbjct: 48  SITSLINMYSKCGQMGEAILVFYDPCHERNVFAYNAIISGFVSNGLASKGFQFYKKMRLE 107

Query: 104 -FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKL 162
              PD +++  ++       E++K       +  + D    +A+V  Y K G+  +A+K+
Sbjct: 108 GVMPDKYTFPCVVRTCCEVMEVKKIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKV 167

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVEL----DDL 218
              +  +++V WN+M++GY K G +  A + F  M  + V      + G + +     DL
Sbjct: 168 FGELSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDL 227

Query: 219 DSAWKFFQKIPEQNVVSWVT----MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAY 274
           D+       + +    S V+    ++  Y +   + +A  +F+ +  +++ +WN++I+ +
Sbjct: 228 DNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVH 287

Query: 275 VQRGQIEEAARLFIEMPER----NPVSWTTMIDGYVRIAKLDEARRLLDQM--------- 321
            Q G  +   RLF +M       + V+ TT++     +A L   R +   M         
Sbjct: 288 EQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREIHGYMIINGLGKDD 347

Query: 322 ---PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAIN 378
                 N+    A++  Y +   M+ A +IFD +   DV  WN+MI GY   G   EA+ 
Sbjct: 348 ENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDVASWNIMIMGYGMHGYALEALG 407

Query: 379 LFRQM 383
           +F QM
Sbjct: 408 MFSQM 412



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 111/503 (22%), Positives = 204/503 (40%), Gaps = 102/503 (20%)

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIG------NYN 157
           F P   S   +I  Y++ G++ +A  +F    ++ +   +NA+++G+   G       + 
Sbjct: 42  FSPSPPSITSLINMYSKCGQMGEAILVFYDPCHERNVFAYNAIISGFVSNGLASKGFQFY 101

Query: 158 EAKKLLDAMPSK------------------------------NIVSWNSMLSGYTKNGEM 187
           +  +L   MP K                              ++   +++++ Y KNG M
Sbjct: 102 KKMRLEGVMPDKYTFPCVVRTCCEVMEVKKIHGCLLKMGLELDVFVGSALVNTYLKNGSM 161

Query: 188 HLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVV----SWVTMLSGY 243
             A K F  +  RDVV WN M++GY ++  LD A + F+++  + V     +   +LS +
Sbjct: 162 EDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVF 221

Query: 244 ARNGRMLEARRL--------FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP 295
           A  G +   + +        +D      V   NA+I  Y +   I +A  +F  + E++ 
Sbjct: 222 ASRGDLDNGKTVHGIVMKMGYDS----GVSVSNALIDMYGKCKHIGDALIIFEMINEKDI 277

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMIS---------GYVQNKRMDEAN 346
            SW ++I  + +    D   RL D+M    I      I+           + + R     
Sbjct: 278 FSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREIHGY 337

Query: 347 QIFDKIGTHD-------VVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYA 399
            I + +G  D       ++  N ++  YA+CG M+ A+ +F  M  KD+ +WN MI GY 
Sbjct: 338 MIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDVASWNIMIMGYG 397

Query: 400 QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459
                                            + + L+AL +F  M +   K +  TL 
Sbjct: 398 --------------------------------MHGYALEALGMFSQMCEAEFKPNEVTLV 425

Query: 460 CALSACAHLAALQLGRQ-IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA-ELLFKDAD 517
             LSAC H   +  GR  +  +    G +  +     +I M  + G +++A E++ K   
Sbjct: 426 GVLSACNHAGFVSHGRLFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMPI 485

Query: 518 PVDVISWNSLIAGYAINGNATEA 540
             + + W +L+    ++GNA  A
Sbjct: 486 QANPVVWRALLGACRLHGNAELA 508



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 150/339 (44%), Gaps = 69/339 (20%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           +++++ Y KNG + DA+K+F ++  R++V WN+MI GY     + EA E+F +M      
Sbjct: 149 SALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVA 208

Query: 106 PDLFSWALMITCYTRKGELEKARELFDL---LPNKEDTACWNAMVAGYAKIGNYNEAKKL 162
           P  F+   +++ +  +G+L+  + +  +   +      +  NA++  Y K  +  +A  +
Sbjct: 209 PSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDALII 268

Query: 163 LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEA-------------------------- 196
            + +  K+I SWNS++S + + G+     + F+                           
Sbjct: 269 FEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAAL 328

Query: 197 MEERDVVSW---------------------NLMLDGYVELDDLDSAWKFFQKIPEQNVVS 235
           M  R++  +                     N ++D Y +   +++A K F  + +++V S
Sbjct: 329 MHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDVAS 388

Query: 236 WVTMLSGYARNGRMLEARRLFDQM------PIRNVVAWNAMIAAYVQRGQIEEAARLFIE 289
           W  M+ GY  +G  LEA  +F QM      P  N V    +++A    G +    RLF+ 
Sbjct: 389 WNIMIMGYGMHGYALEALGMFSQMCEAEFKP--NEVTLVGVLSACNHAGFVSH-GRLFLA 445

Query: 290 MPERN----PV--SWTTMIDGYVRIAKLDEARRLLDQMP 322
             E      P    +T +ID   R   L++A  ++ +MP
Sbjct: 446 QMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMP 484



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 170/380 (44%), Gaps = 76/380 (20%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM-- 72
           VF  +  +    K+G +E+A K+F ++S ++ V +N+MI+ YAK G +++A ++F +M  
Sbjct: 145 VFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHV 204

Query: 73  ----PQRNLVSW---------------------------------NSMIAGYLHNDKVKE 95
               P R  ++                                  N++I  Y     + +
Sbjct: 205 KGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGD 264

Query: 96  ARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD------LLPNKEDT-----ACWN 144
           A  +F+ +   D+FSW  +I+ + + G+ +    LFD      +LP+         AC +
Sbjct: 265 ALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSH 324

Query: 145 AM-------VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
                    + GY  I   N   K  +     N++  N+++  Y K G M+ A K F++M
Sbjct: 325 LAALMHGREIHGYMII---NGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSM 381

Query: 198 EERDVVSWNLMLDGYVELDDLDSAWKFFQKIPE----QNVVSWVTMLS-----GYARNGR 248
            ++DV SWN+M+ GY        A   F ++ E     N V+ V +LS     G+  +GR
Sbjct: 382 SKKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVSHGR 441

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP-ERNPVSWTTMIDGYVR 307
           +  A+       I  +  +  +I    + G +E+A  +  +MP + NPV W  ++ G  R
Sbjct: 442 LFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMPIQANPVVWRALL-GACR 500

Query: 308 I---AKLDE--ARRLLDQMP 322
           +   A+L E  AR++L   P
Sbjct: 501 LHGNAELAEIAARQVLQLEP 520



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 143/331 (43%), Gaps = 47/331 (14%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR-- 75
            N  I   GK   + +A+ IF  +++K+  ++NS+IS + + G  +   +LF++M     
Sbjct: 249 SNALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGI 308

Query: 76  --NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDL 133
             +LV+  +++    H   +   RE+   M    L             G+ ++   + +L
Sbjct: 309 LPDLVTITTVLPACSHLAALMHGREIHGYMIINGL-------------GKDDENGAVDNL 355

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
           L +       NA++  YAK G+ N A K+ D+M  K++ SWN M+ GY  +G    A   
Sbjct: 356 LVS-------NAVMDMYAKCGSMNNALKIFDSMSKKDVASWNIMIMGYGMHGYALEALGM 408

Query: 194 FEAMEERDVVSWNLMLDGYVE--------------LDDLDSAWKFFQKIPEQNVVSWVTM 239
           F  M E +     + L G +               L  ++S +     I     V  + M
Sbjct: 409 FSQMCEAEFKPNEVTLVGVLSACNHAGFVSHGRLFLAQMESTFGVIPTIEHYTCV--IDM 466

Query: 240 LSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQIEE---AARLFIEMPERNP 295
           L    R G + +A  +  +MPI+ N V W A++ A    G  E    AAR  +++   + 
Sbjct: 467 L---GRAGHLEDAYEIVQKMPIQANPVVWRALLGACRLHGNAELAEIAARQVLQLEPEHC 523

Query: 296 VSWTTMIDGYVRIAKLDEARRLLDQMPYKNI 326
            S+  M + Y  I + +E   +   M  +N+
Sbjct: 524 GSYVLMSNVYGVIGRYEEVLEVRKTMKEQNV 554



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 95/204 (46%), Gaps = 38/204 (18%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD-ADPVD 520
           L +CA    L  G+Q+H L I  G+        SLI MY+KCG++  A L+F D     +
Sbjct: 18  LQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHERN 77

Query: 521 VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS--------HVGLV 572
           V ++N++I+G+  NG A++  + +++M +EGV PD  TF  V+  C         H  L+
Sbjct: 78  VFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEVKKIHGCLL 137

Query: 573 DGGLKLFECMTEVYAIEPLVEHYA------------------------CMIDLLSRAGRL 608
             GL+L     +V+    LV  Y                          MI+  ++ G L
Sbjct: 138 KMGLEL-----DVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCL 192

Query: 609 DEAFEMVKGMKIKPNAGIWGTLLG 632
           DEA E+ + M +K  A    T+ G
Sbjct: 193 DEALEVFRRMHVKGVAPSRFTITG 216



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 101/218 (46%), Gaps = 23/218 (10%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           N +  N+++  YAK G +N+A K+F+ M ++++ SWN MI GY  +    EA  +F +M 
Sbjct: 354 NLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDVASWNIMIMGYGMHGYALEALGMFSQMC 413

Query: 104 ---FRPDLFSWALMITCYTRKGELEKAR-------ELFDLLPNKEDTACWNAMVAGYAKI 153
              F+P+  +   +++     G +   R         F ++P  E   C   M+    + 
Sbjct: 414 EAEFKPNEVTLVGVLSACNHAGFVSHGRLFLAQMESTFGVIPTIEHYTCVIDML---GRA 470

Query: 154 GNYNEAKKLLDAMPSK-NIVSWNSMLSGYTKNGEMHL---ASKFFEAMEERDVVSWNLML 209
           G+  +A +++  MP + N V W ++L     +G   L   A++    +E     S+ LM 
Sbjct: 471 GHLEDAYEIVQKMPIQANPVVWRALLGACRLHGNAELAEIAARQVLQLEPEHCGSYVLMS 530

Query: 210 DGYVELDDLDSAWKFFQKIPEQNV-----VSWVTMLSG 242
           + Y  +   +   +  + + EQNV      SW+ +  G
Sbjct: 531 NVYGVIGRYEEVLEVRKTMKEQNVKKTPGCSWIELKDG 568



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 19/212 (8%)

Query: 18  QNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR-- 75
            N  +    K G +  A+KIF  MS+K+  ++N MI  Y  +G   +A  +F QM +   
Sbjct: 358 SNAVMDMYAKCGSMNNALKIFDSMSKKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEF 417

Query: 76  --NLVSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKAR 128
             N V+   +++   H   V   R    +M       P +  +  +I    R G LE A 
Sbjct: 418 KPNEVTLVGVLSACNHAGFVSHGRLFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAY 477

Query: 129 ELFDLLPNKEDTACWNAMVAGYAKIGNYN----EAKKLLDAMPSKNIVSWNSMLSGYTKN 184
           E+   +P + +   W A++      GN       A+++L   P ++  S+  M + Y   
Sbjct: 478 EIVQKMPIQANPVVWRALLGACRLHGNAELAEIAARQVLQLEP-EHCGSYVLMSNVYGVI 536

Query: 185 GEMHLASKFFEAMEERDV-----VSWNLMLDG 211
           G      +  + M+E++V      SW  + DG
Sbjct: 537 GRYEEVLEVRKTMKEQNVKKTPGCSWIELKDG 568


>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 552

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 187/525 (35%), Positives = 288/525 (54%), Gaps = 19/525 (3%)

Query: 194 FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLSGYAR---- 245
           F  ++   ++ WN M+ G  + D  + A  F+  +  + +    ++++ +    AR    
Sbjct: 29  FNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDV 88

Query: 246 -NGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDG 304
             G+M+    +       + V+ NA+I  YV  G++  A ++F  M ER+ VSW ++I G
Sbjct: 89  RQGQMVRVHSMKLGFESXSFVS-NALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICG 147

Query: 305 YVRIAKLDEARRLLDQMPYKNIAAQTAM----ISGYVQNKRMDEANQIFDKIGTHDVVC- 359
           Y +  +  +   L  +M   N+ A +      IS        +  + +   I  H VV  
Sbjct: 148 YYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVD 207

Query: 360 ---WNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGK 416
               N +I  Y + G +D A  +F QM  K+IV+WN MI GYA++  +  A K+F EM  
Sbjct: 208 LYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEM-P 266

Query: 417 RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ 476
            R+ +SW ++I G+   + H +A+K+F  M     K D  T+A ALSACAHL +L  G  
Sbjct: 267 SRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEA 326

Query: 477 IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGN 536
           +H    K    +D+FVGNSLI MY KCG ++ A  +F D    D +SW S+I+G A+NG 
Sbjct: 327 VHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGF 386

Query: 537 ATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYA 596
           A  A+ +F++M+ EG+ P   TF+GVL AC+HVGLVD G++ F+ M   Y + P ++HY 
Sbjct: 387 AESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYG 446

Query: 597 CMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQ 656
           C++DLL R+G LD A+  +K M I P+  IW  LL AC++H N+ L  I  +KL  L+P 
Sbjct: 447 CVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGNLVLAEIVSKKLLVLDPS 506

Query: 657 KTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVK 701
               Y L S+ +A + RWD+V K+R  ME +  QK    S IEV+
Sbjct: 507 NNGNYVLSSSTYAGSDRWDDVIKIRKLMEVTNLQKPCAYSSIEVR 551



 Score =  159 bits (402), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 131/505 (25%), Positives = 225/505 (44%), Gaps = 65/505 (12%)

Query: 65  ARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWALMITCY- 118
           A  +F Q+ +  L+ WN MI G   +D+  +A   ++ M+        L    L  +C  
Sbjct: 25  AHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCAR 84

Query: 119 ---TRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWN 175
               R+G++ +   +   L  +  +   NA++  Y   G    A+K+ D M  +++VSWN
Sbjct: 85  VSDVRQGQMVRVHSM--KLGFESXSFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWN 142

Query: 176 SMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWK----FFQKIPEQ 231
           S++ GY +          F  M+  +V + ++ +   +      S W+      + I E 
Sbjct: 143 SIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEH 202

Query: 232 NVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLF 287
            VV  +    T++  Y R G +  A R+F QM  +N+V+WNAMI  Y + G +  A +LF
Sbjct: 203 GVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLF 262

Query: 288 IEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK-----NIAAQTAMISGYVQNKRM 342
            EMP R+ +SWT+MI GY    +  EA +L  +M         I   TA+ S       +
Sbjct: 263 NEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATAL-SACAHLGSL 321

Query: 343 DEANQIFDKIGTH----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGY 398
           D    + D I  H    DV   N +I  Y +CG +++A+ +F  M  +D V+W ++I+G 
Sbjct: 322 DAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGL 381

Query: 399 AQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTL 458
           A                           ++GF ++     AL +F  M +EG    H T 
Sbjct: 382 A---------------------------VNGFAES-----ALNVFDQMLKEGICPTHGTF 409

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGY--VNDLFVGNSLITMYAKCGRIQNAELLFKDA 516
              L ACAH+  +  G + H  ++++ Y    ++     ++ +  + G +  A    K  
Sbjct: 410 VGVLLACAHVGLVDKGVE-HFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKM 468

Query: 517 DPV-DVISWNSLIAGYAINGNATEA 540
             V DV+ W  L++   ++GN   A
Sbjct: 469 PIVPDVVIWRILLSACKLHGNLVLA 493



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 108/431 (25%), Positives = 188/431 (43%), Gaps = 81/431 (18%)

Query: 50  NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FR 105
           N++I  Y   G +  A+K+F+ M +R++VSWNS+I GY   ++ K+  +LF +M     R
Sbjct: 111 NALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVR 170

Query: 106 PD-------------LFSWAL----------------------MITCYTRKGELEKAREL 130
            D             L  W +                      +I  Y R+G ++ A  +
Sbjct: 171 ADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRV 230

Query: 131 FDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLA 190
           F  +  K +   WNAM+ GYAK+GN   AKKL + MPS++++SW SM+ GY+   +   A
Sbjct: 231 FYQMKEK-NIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEA 289

Query: 191 SKFFE----AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV----TMLSG 242
            K F+    +M + D ++    L     L  LD+       I + ++ S V    +++  
Sbjct: 290 VKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDM 349

Query: 243 YARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWT- 299
           Y + G + +A ++F+ M  R+ V+W ++I+     G  E A  +F +M +    P   T 
Sbjct: 350 YCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTF 409

Query: 300 ----------TMID-GYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQI 348
                      ++D G      ++   RL  +M +          SGY     +D A   
Sbjct: 410 VGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLCRSGY-----LDMAYNF 464

Query: 349 FDKIG-THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAG--------YA 399
             K+    DVV W +++      G +     +  ++V+K ++  +    G        YA
Sbjct: 465 IKKMPIVPDVVIWRILLSACKLHGNL-----VLAEIVSKKLLVLDPSNNGNYVLSSSTYA 519

Query: 400 QIRQMDDAVKI 410
              + DD +KI
Sbjct: 520 GSDRWDDVIKI 530



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 157/342 (45%), Gaps = 33/342 (9%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  I   G+ G ++ A ++F QM +KN V++N+MI  YAK G +  A+KLF +MP R+++
Sbjct: 212 NTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVI 271

Query: 79  SWNSMIAGY----LHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL 134
           SW SMI GY     H + VK  +E+   M +PD  + A  ++     G L+    + D +
Sbjct: 272 SWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYI 331

Query: 135 PN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLAS 191
                K D    N+++  Y K G   +A ++ + M +++ VSW S++SG   NG    A 
Sbjct: 332 RKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAESAL 391

Query: 192 KFFEAMEERDVVSWN------LMLDGYVELDD-----LDSAWKFFQKIPEQNVVSWVTML 240
             F+ M +  +   +      L+   +V L D       S    ++  PE      V  L
Sbjct: 392 NVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGCVVDL 451

Query: 241 SGYARNGRMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQIEEA----ARLFIEMPERNP 295
               R+G +  A     +MPI  +VV W  +++A    G +  A     +L +  P  N 
Sbjct: 452 --LCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGNLVLAEIVSKKLLVLDPSNNG 509

Query: 296 ---VSWTTMI-----DGYVRIAKLDEARRLLDQMPYKNIAAQ 329
              +S +T       D  ++I KL E   L     Y +I  +
Sbjct: 510 NYVLSSSTYAGSDRWDDVIKIRKLMEVTNLQKPCAYSSIEVR 551


>gi|302780000|ref|XP_002971775.1| hypothetical protein SELMODRAFT_60139 [Selaginella moellendorffii]
 gi|300160907|gb|EFJ27524.1| hypothetical protein SELMODRAFT_60139 [Selaginella moellendorffii]
          Length = 516

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 176/516 (34%), Positives = 286/516 (55%), Gaps = 7/516 (1%)

Query: 173 SWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQN 232
           SWN +++   +N  +  +   F+ M ERD ++WN +L  Y +   L+ A   F  +PE++
Sbjct: 1   SWNIIITACIQNNAVGESKGLFDRMPERDTITWNSLLSAYAQRGHLEEANDLFYMMPERD 60

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE 292
            +SW T++   A +   L A+ ++  MP  + V+W+ M+ AY   G +++   LF  MPE
Sbjct: 61  YMSWNTLIQASASSNLDL-AQEIYHYMPEHSHVSWSVMLTAYANFGHLDKTRSLFDSMPE 119

Query: 293 RNPVSWTTMIDGYVRIAKLDEA-RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK 351
           RN +SWT M  GY +   L E+   +   MP +++ + TAMI+ Y +     +A + FD 
Sbjct: 120 RNLISWTAMAAGYAQNGYLQESYSEIFSTMPERDVFSWTAMITVYGEFDDPHKARRCFDL 179

Query: 352 IGTHDVVCWNVMIKG-YAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKI 410
           +   +VV W+ M +  YA  G ++ A   F +M ++D+V+WN++IA ++Q  ++++A  +
Sbjct: 180 MPHKNVVSWSAMFQAAYAHNGHLESAKIAFERMPSRDVVSWNSIIAFFSQKGKLEEAKDL 239

Query: 411 FEEMGKRRNTVSWNALISGFLQNEFHLD-ALKIFVLMTQEGKKADHSTLACALSACAHLA 469
           F  M    NT +WN +I    Q+  HLD A+ +F LM   G   D  T      AC+ +A
Sbjct: 240 FHLM-PEPNTAAWNVMIQAHAQSG-HLDLAMDVFRLMDLHGVSPDSVTYIAIFDACSRIA 297

Query: 470 ALQLGRQIHHLAIKSGYVND-LFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLI 528
             + G       +  G + D + VGN+ +TMY + G    A  +F+     D +SWN+++
Sbjct: 298 NAEEGSAFIASIVHPGILQDSVAVGNAALTMYGRSGLAAGAWSVFQQMPVRDSVSWNAML 357

Query: 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI 588
             +A NG+   A+ +F  M +EG+ PD +TF+ VLSACSH GL+      F  ++  Y +
Sbjct: 358 TAFARNGHGEAALDVFLAMELEGLVPDIITFVNVLSACSHAGLLHRARGYFHSISCDYGL 417

Query: 589 EPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVE 648
            P+ +HY C+ DLL+R+GRL EA E+V  M  +PN   W  LLGACR H +++ G  A  
Sbjct: 418 TPIYDHYVCLTDLLARSGRLVEAEELVNSMPFEPNYEAWMALLGACRSHGDVRRGNRAAG 477

Query: 649 KLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSM 684
              +      S Y LLS+++AEAG  D+V  +R +M
Sbjct: 478 FFVQAGVDAESPYVLLSHLYAEAGSKDDVLVIRKAM 513



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 146/480 (30%), Positives = 238/480 (49%), Gaps = 52/480 (10%)

Query: 48  TYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPD 107
           ++N +I+A  +N  V +++ LF++MP+R+ ++WNS+++ Y     ++EA +LF  M   D
Sbjct: 1   SWNIIITACIQNNAVGESKGLFDRMPERDTITWNSLLSAYAQRGHLEEANDLFYMMPERD 60

Query: 108 LFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP 167
             SW  +I   +    L+ A+E++  +P     + W+ M+  YA  G+ ++ + L D+MP
Sbjct: 61  YMSWNTLIQA-SASSNLDLAQEIYHYMPEHSHVS-WSVMLTAYANFGHLDKTRSLFDSMP 118

Query: 168 SKNIVSWNSMLSGYTKNGEMHLA-SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
            +N++SW +M +GY +NG +  + S+ F  M ERDV SW  M+  Y E DD   A + F 
Sbjct: 119 ERNLISWTAMAAGYAQNGYLQESYSEIFSTMPERDVFSWTAMITVYGEFDDPHKARRCFD 178

Query: 227 KIPEQNVVSWVTML-SGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAAR 285
            +P +NVVSW  M  + YA NG +  A+  F++MP R+VV+WN++IA + Q+G++EEA  
Sbjct: 179 LMPHKNVVSWSAMFQAAYAHNGHLESAKIAFERMPSRDVVSWNSIIAFFSQKGKLEEAKD 238

Query: 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQT-AMISGYVQNKRMDE 344
           LF  MPE N  +W  MI  + +   LD A  +   M    ++  +   I+ +    R+  
Sbjct: 239 LFHLMPEPNTAAWNVMIQAHAQSGHLDLAMDVFRLMDLHGVSPDSVTYIAIFDACSRIAN 298

Query: 345 ANQ--------IFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIA 396
           A +        +   I    V   N  +  Y + G    A ++F+QM  +D V+WN M+ 
Sbjct: 299 AEEGSAFIASIVHPGILQDSVAVGNAALTMYGRSGLAAGAWSVFQQMPVRDSVSWNAMLT 358

Query: 397 GYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHS 456
            +A                                +N     AL +F+ M  EG   D  
Sbjct: 359 AFA--------------------------------RNGHGEAALDVFLAMELEGLVPDII 386

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKSGY----VNDLFVGNSLITMYAKCGRIQNAELL 512
           T    LSAC+H   L   R   H +I   Y    + D +V   L  + A+ GR+  AE L
Sbjct: 387 TFVNVLSACSHAGLLHRARGYFH-SISCDYGLTPIYDHYV--CLTDLLARSGRLVEAEEL 443



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 122/411 (29%), Positives = 222/411 (54%), Gaps = 17/411 (4%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  IT   ++  V E+  +F +M +++T+T+NS++SAYA+ G + +A  LF  MP+R+ +
Sbjct: 3   NIIITACIQNNAVGESKGLFDRMPERDTITWNSLLSAYAQRGHLEEANDLFYMMPERDYM 62

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKE 138
           SWN++I     +  +  A+E++  M      SW++M+T Y   G L+K R LFD +P + 
Sbjct: 63  SWNTLIQASA-SSNLDLAQEIYHYMPEHSHVSWSVMLTAYANFGHLDKTRSLFDSMPER- 120

Query: 139 DTACWNAMVAGYAKIGNYNEA-KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM 197
           +   W AM AGYA+ G   E+  ++   MP +++ SW +M++ Y +  + H A + F+ M
Sbjct: 121 NLISWTAMAAGYAQNGYLQESYSEIFSTMPERDVFSWTAMITVYGEFDDPHKARRCFDLM 180

Query: 198 EERDVVSWNLMLD-GYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF 256
             ++VVSW+ M    Y     L+SA   F+++P ++VVSW ++++ +++ G++ EA+ LF
Sbjct: 181 PHKNVVSWSAMFQAAYAHNGHLESAKIAFERMPSRDVVSWNSIIAFFSQKGKLEEAKDLF 240

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLD 312
             MP  N  AWN MI A+ Q G ++ A  +F  M       + V++  + D   RIA  +
Sbjct: 241 HLMPEPNTAAWNVMIQAHAQSGHLDLAMDVFRLMDLHGVSPDSVTYIAIFDACSRIANAE 300

Query: 313 EARRLLDQMPYKNI-----AAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367
           E    +  + +  I     A   A ++ Y ++     A  +F ++   D V WN M+  +
Sbjct: 301 EGSAFIASIVHPGILQDSVAVGNAALTMYGRSGLAAGAWSVFQQMPVRDSVSWNAMLTAF 360

Query: 368 AQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           A+ G  + A+++F  M    +  DI+T+  +++  +    +  A   F  +
Sbjct: 361 ARNGHGEAALDVFLAMELEGLVPDIITFVNVLSACSHAGLLHRARGYFHSI 411



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 152/328 (46%), Gaps = 53/328 (16%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMI-SAYAKNGRVNDARKLFEQMP 73
           VF+    IT  G+     +A + F  M  KN V++++M  +AYA NG +  A+  FE+MP
Sbjct: 154 VFSWTAMITVYGEFDDPHKARRCFDLMPHKNVVSWSAMFQAAYAHNGHLESAKIAFERMP 213

Query: 74  QRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDL 133
            R++VSWNS+IA +    K++EA++LF  M  P+  +W +MI  + + G L+ A ++F L
Sbjct: 214 SRDVVSWNSIIAFFSQKGKLEEAKDLFHLMPEPNTAAWNVMIQAHAQSGHLDLAMDVFRL 273

Query: 134 L------PN---------------------------------KEDTACWNAMVAGYAKIG 154
           +      P+                                 ++  A  NA +  Y + G
Sbjct: 274 MDLHGVSPDSVTYIAIFDACSRIANAEEGSAFIASIVHPGILQDSVAVGNAALTMYGRSG 333

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLMLD 210
               A  +   MP ++ VSWN+ML+ + +NG    A   F AME      D++++  +L 
Sbjct: 334 LAAGAWSVFQQMPVRDSVSWNAMLTAFARNGHGEAALDVFLAMELEGLVPDIITFVNVLS 393

Query: 211 GYVELDDLDSAWKFFQKIPEQNVVS-----WVTMLSGYARNGRMLEARRLFDQMPIR-NV 264
                  L  A  +F  I     ++     +V +    AR+GR++EA  L + MP   N 
Sbjct: 394 ACSHAGLLHRARGYFHSISCDYGLTPIYDHYVCLTDLLARSGRLVEAEELVNSMPFEPNY 453

Query: 265 VAWNAMIAAYVQRGQIE---EAARLFIE 289
            AW A++ A    G +     AA  F++
Sbjct: 454 EAWMALLGACRSHGDVRRGNRAAGFFVQ 481


>gi|347954458|gb|AEP33729.1| chlororespiratory reduction 21, partial [Brassica rapa]
          Length = 788

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 206/726 (28%), Positives = 367/726 (50%), Gaps = 37/726 (5%)

Query: 44  KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM 103
           KN      ++  YAK   +  A  LF ++  RN+ SW ++I        V+ A   F +M
Sbjct: 61  KNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRMGLVEGALMGFVEM 120

Query: 104 FRPDLFSWALMITCYTRK-GELE---KARELFDLLPNKEDTACW---NAMVAGYAKIGNY 156
            + ++F    ++    +  G L+     R +   +       C    +++   Y K G  
Sbjct: 121 LKDEIFPDNFVVPNVCKACGALQWRGFGRGVHGYVAKSGLDDCVFVASSLADMYGKCGVL 180

Query: 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLD------ 210
           ++A+K+ D +P +N+V+WN+++ GY +NG    A +    M E  V    + +       
Sbjct: 181 DDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSAS 240

Query: 211 ---GYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAW 267
              G VE      A      +   N++   ++L+ Y + G +  A  +FD+M  ++VV W
Sbjct: 241 ANMGGVEEGKQSHALAVVNGLELDNILG-TSVLNFYCKVGLVEYAEMVFDRMVGKDVVTW 299

Query: 268 NAMIAAYVQRGQIEEAARLF----IEMPERNPVSWTTMIDGYVRIAKLDEARRL----LD 319
           N +I+ YVQ+G +E+A R+     +E  + + V+ +T++    R       + +    + 
Sbjct: 300 NLLISGYVQQGLVEDAIRMCKLMRLEKLKFDCVTLSTLMSTAARTQNSKLGKEVQCYCIR 359

Query: 320 QMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINL 379
                +I   +  +  Y +   + +A ++FD     D++ WN ++  YA+ G   EA+ L
Sbjct: 360 HSFESDIVLASTAVDMYAKCGSIVDAKKVFDSTVQKDLILWNTLLAAYAESGLSGEALRL 419

Query: 380 FRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALISGFLQ 432
           F +M    V  +++TWN +I    +  Q+D+A K+F +M   G     VSW  +++G +Q
Sbjct: 420 FYEMQLESVPPNVITWNLIILSLLRNGQVDEAKKMFLQMQSSGIVPTIVSWTTMMNGLVQ 479

Query: 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG-YVNDLF 491
           N    +A+     M + G + +  ++  ALSACA+LA+L  GR +H   I++  + + + 
Sbjct: 480 NGCSEEAIHYLRKMQEYGMRPNVFSITVALSACANLASLHFGRSVHGYIIRNRLHSSSVS 539

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
           +  SL+ MYAKCG I  AE +F+     ++  +N++I+ YA+ GN  EA+ L+  +   G
Sbjct: 540 IETSLVDMYAKCGDISKAEKVFRRKLFSELPLYNAMISAYALYGNVEEAMALYRSLDDMG 599

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
           + PD +TF  +LSAC+H G ++  +++F  M   + ++P +EHY  M+DLL+ AG  ++A
Sbjct: 600 IKPDNITFTNILSACNHAGDINQAIEIFSDMVSKHGVKPCLEHYGLMVDLLASAGETEKA 659

Query: 612 FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEA 671
             +++ M  +P+A +  +LL  C      +L     ++L E EP  +  Y  +SN +A  
Sbjct: 660 LRLMEEMPYEPDARMIQSLLATCNKEHKTELVEYLSKQLLESEPDNSGNYVTISNAYAVE 719

Query: 672 GRWDEVEKVRVSMEGSGAQKQPGCSWIEVKN----QIHTFLSGDPKQCRTAEICNTLKTL 727
           G WDEV K+R  M+  G +KQPGCSWI VK     ++  F++ D    R  EI   L  L
Sbjct: 720 GSWDEVVKMREMMKAKGLKKQPGCSWIRVKREEEEEVQVFVANDKTHLRNNEIRRMLALL 779

Query: 728 AAQIRN 733
              +R+
Sbjct: 780 LNDMRS 785



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 142/591 (24%), Positives = 253/591 (42%), Gaps = 126/591 (21%)

Query: 183 KNGEMHLASKFFEAMEERDVVS----WNLMLDGYVELDDLDSAWKFFQKIPE------QN 232
           KNGE+  A      M+ R+V      +  +L G V   D  +  +   +I +      +N
Sbjct: 3   KNGEIKEALSLVTEMDFRNVRIGPEIYGEILQGCVYERDFHTGQQIHARILKNGDFYAKN 62

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM-- 290
                 ++  YA+   +  A  LF ++ +RNV +W A+I    + G +E A   F+EM  
Sbjct: 63  EYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRMGLVEGALMGFVEMLK 122

Query: 291 ----PER----------NPVSW-----------------------TTMIDGYVRIAKLDE 313
               P+             + W                       +++ D Y +   LD+
Sbjct: 123 DEIFPDNFVVPNVCKACGALQWRGFGRGVHGYVAKSGLDDCVFVASSLADMYGKCGVLDD 182

Query: 314 ARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKI--------------------- 352
           AR++ D++P +N+ A  A++ GYVQN   +EA ++   +                     
Sbjct: 183 ARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLMCDMREEGVEPTRVTVSTCLSASAN 242

Query: 353 --------GTH----------DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTM 394
                    +H          D +    ++  Y + G ++ A  +F +MV KD+VTWN +
Sbjct: 243 MGGVEEGKQSHALAVVNGLELDNILGTSVLNFYCKVGLVEYAEMVFDRMVGKDVVTWNLL 302

Query: 395 IAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
           I+GY Q   ++DA+++ +                                LM  E  K D
Sbjct: 303 ISGYVQQGLVEDAIRMCK--------------------------------LMRLEKLKFD 330

Query: 455 HSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFK 514
             TL+  +S  A     +LG+++    I+  + +D+ + ++ + MYAKCG I +A+ +F 
Sbjct: 331 CVTLSTLMSTAARTQNSKLGKEVQCYCIRHSFESDIVLASTAVDMYAKCGSIVDAKKVFD 390

Query: 515 DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574
                D+I WN+L+A YA +G + EA++LF EM +E V P+ +T+  ++ +    G VD 
Sbjct: 391 STVQKDLILWNTLLAAYAESGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVDE 450

Query: 575 GLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMK---IKPNAGIWGTLL 631
             K+F  M +   I P +  +  M++ L + G  +EA   ++ M+   ++PN       L
Sbjct: 451 AKKMFLQM-QSSGIVPTIVSWTTMMNGLVQNGCSEEAIHYLRKMQEYGMRPNVFSITVAL 509

Query: 632 GACRMHQNIKLGRIAVEKL--SELEPQKTSCYALLSNMHAEAGRWDEVEKV 680
            AC    ++  GR     +  + L     S    L +M+A+ G   + EKV
Sbjct: 510 SACANLASLHFGRSVHGYIIRNRLHSSSVSIETSLVDMYAKCGDISKAEKV 560



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 139/587 (23%), Positives = 278/587 (47%), Gaps = 54/587 (9%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM-- 72
           VF  +      GK G +++A K+F ++ ++N V +N+++  Y +NG   +A +L   M  
Sbjct: 164 VFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNALMVGYVQNGMNEEAIRLMCDMRE 223

Query: 73  ----PQRNLVSW---NSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELE 125
               P R  VS     S   G +   K   A  + + +   ++   +++   Y + G +E
Sbjct: 224 EGVEPTRVTVSTCLSASANMGGVEEGKQSHALAVVNGLELDNILGTSVL-NFYCKVGLVE 282

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI----VSWNSMLSGY 181
            A  +FD +  K D   WN +++GY + G   +A ++   M  + +    V+ ++++S  
Sbjct: 283 YAEMVFDRMVGK-DVVTWNLLISGYVQQGLVEDAIRMCKLMRLEKLKFDCVTLSTLMSTA 341

Query: 182 TKNGEMHLASKF----FEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWV 237
            +     L  +          E D+V  +  +D Y +   +  A K F    +++++ W 
Sbjct: 342 ARTQNSKLGKEVQCYCIRHSFESDIVLASTAVDMYAKCGSIVDAKKVFDSTVQKDLILWN 401

Query: 238 TMLSGYARNGRMLEARRLFDQMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
           T+L+ YA +G   EA RLF +M +     NV+ WN +I + ++ GQ++EA ++F++M   
Sbjct: 402 TLLAAYAESGLSGEALRLFYEMQLESVPPNVITWNLIILSLLRNGQVDEAKKMFLQMQSS 461

Query: 294 ----NPVSWTTMIDGYVRIAKLDEARRLLDQMP----YKNIAAQTAMIS-----GYVQNK 340
                 VSWTTM++G V+    +EA   L +M       N+ + T  +S       +   
Sbjct: 462 GIVPTIVSWTTMMNGLVQNGCSEEAIHYLRKMQEYGMRPNVFSITVALSACANLASLHFG 521

Query: 341 RMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQ 400
           R      I +++ +  V     ++  YA+CG + +A  +FR+ +  ++  +N MI+ YA 
Sbjct: 522 RSVHGYIIRNRLHSSSVSIETSLVDMYAKCGDISKAEKVFRRKLFSELPLYNAMISAYAL 581

Query: 401 IRQMDDAVKIF---EEMGKRRNTVSWNALISGFLQNEFHLDALKIFV-LMTQEGKKA--D 454
              +++A+ ++   ++MG + + +++  ++S          A++IF  ++++ G K   +
Sbjct: 582 YGNVEEAMALYRSLDDMGIKPDNITFTNILSACNHAGDINQAIEIFSDMVSKHGVKPCLE 641

Query: 455 HSTLACALSACAHLA--ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512
           H  L   L A A     AL+L  ++        Y  D  +  SL+    K  + +  E L
Sbjct: 642 HYGLMVDLLASAGETEKALRLMEEMP-------YEPDARMIQSLLATCNKEHKTELVEYL 694

Query: 513 FK---DADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
            K   +++P +  ++ ++   YA+ G+  E +K+ E M  +G+   P
Sbjct: 695 SKQLLESEPDNSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKQP 741



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 9/145 (6%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S V  +   +    K G + +A K+F +        YN+MISAYA  G V +A  L+  +
Sbjct: 536 SSVSIETSLVDMYAKCGDISKAEKVFRRKLFSELPLYNAMISAYALYGNVEEAMALYRSL 595

Query: 73  PQRNL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGE 123
               +    +++ ++++   H   + +A E+F  M      +P L  + LM+      GE
Sbjct: 596 DDMGIKPDNITFTNILSACNHAGDINQAIEIFSDMVSKHGVKPCLEHYGLMVDLLASAGE 655

Query: 124 LEKARELFDLLPNKEDTACWNAMVA 148
            EKA  L + +P + D     +++A
Sbjct: 656 TEKALRLMEEMPYEPDARMIQSLLA 680


>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
 gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
          Length = 547

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 181/489 (37%), Positives = 270/489 (55%), Gaps = 16/489 (3%)

Query: 246 NGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGY 305
           +GR   A R+F  +P  N+   NAMI AY Q     +A  +++ M    P   ++   G+
Sbjct: 55  HGRAAHAARVFAHVPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPDPSSS--GGF 112

Query: 306 VRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIK 365
                      + D+  Y  +      ++   Q  R   A+       +H +V  N +I+
Sbjct: 113 ----------SVGDRFTYPFLLKACGGLAAS-QLGRQVHAHVARSGCESHAIV-QNSLIE 160

Query: 366 GYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
            Y +CG +  A  +F  M  KD V+WNT+I+ +A++ QM  A ++F  M   +  VSW A
Sbjct: 161 MYTRCGDLSLARKVFDGMREKDAVSWNTLISAHARMGQMRKARELFHSM-PDKTVVSWTA 219

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485
           L+SG+        A+++F  M  EG + D  ++   L ACA L AL+LGR I+    K G
Sbjct: 220 LVSGYTAVGDFAGAVEVFRQMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNKHG 279

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
            +  +++ N+L+ MYAKCG I+ A  LF      DVISW++ I G A +G A EA+KLFE
Sbjct: 280 MLGKIYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVKLFE 339

Query: 546 EMVMEG-VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSR 604
            M  EG V P+ +TF+G+LSACSH GL+D GL+ F+ M E Y +EP VEHY C++DLL R
Sbjct: 340 VMDREGRVMPNGITFVGLLSACSHAGLLDEGLRYFDRMKEEYGVEPSVEHYGCVVDLLGR 399

Query: 605 AGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALL 664
           +GR+  A + + GM I P+  IWG+LL ACR H ++    +A E+L ELEP+      +L
Sbjct: 400 SGRIQRALDTIGGMPIPPDGKIWGSLLSACRSHSDVDTAVVAAERLVELEPEDVGNLVML 459

Query: 665 SNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTL 724
           +N++A AGRW  V   R  +     +K PGCS IEV N +  F++G+        I   +
Sbjct: 460 ANVYAAAGRWGNVASTRKEIRSRSTRKTPGCSMIEVDNVVREFVAGEDLGPELGGIAAII 519

Query: 725 KTLAAQIRN 733
             LA+Q+ +
Sbjct: 520 DILASQLAD 528



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 95/409 (23%), Positives = 184/409 (44%), Gaps = 36/409 (8%)

Query: 41  MSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELF 100
           +SQ + V    ++     +GR   A ++F  +P  NL   N+MI  Y  N   ++A E++
Sbjct: 38  LSQSSYVA-TQIVHVCNGHGRAAHAARVFAHVPAPNLHLHNAMIKAYAQNHLHRDAVEVY 96

Query: 101 DKMFR-------------PDLFSWALMITCYTRKGELEKARELFDLLPN---KEDTACWN 144
            +M R              D F++  ++         +  R++   +     +      N
Sbjct: 97  VRMLRCLPDPSSSGGFSVGDRFTYPFLLKACGGLAASQLGRQVHAHVARSGCESHAIVQN 156

Query: 145 AMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVS 204
           +++  Y + G+ + A+K+ D M  K+ VSWN+++S + + G+M  A + F +M ++ VVS
Sbjct: 157 SLIEMYTRCGDLSLARKVFDGMREKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVS 216

Query: 205 WNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLF---- 256
           W  ++ GY  + D   A + F+++     E + VS V +L   A+ G +   R ++    
Sbjct: 217 WTALVSGYTAVGDFAGAVEVFRQMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCN 276

Query: 257 DQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARR 316
               +  +   NA++  Y + G IEEA +LF  M E++ +SW+T I G     +  EA +
Sbjct: 277 KHGMLGKIYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLAAHGRAREAVK 336

Query: 317 LLDQMPYK-----NIAAQTAMISGYVQNKRMDEANQIFDKIGTH-----DVVCWNVMIKG 366
           L + M  +     N      ++S       +DE  + FD++         V  +  ++  
Sbjct: 337 LFEVMDREGRVMPNGITFVGLLSACSHAGLLDEGLRYFDRMKEEYGVEPSVEHYGCVVDL 396

Query: 367 YAQCGRMDEAINLFRQM-VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
             + GR+  A++    M +  D   W ++++       +D AV   E +
Sbjct: 397 LGRSGRIQRALDTIGGMPIPPDGKIWGSLLSACRSHSDVDTAVVAAERL 445



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 141/302 (46%), Gaps = 20/302 (6%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S+   QN  I    + G +  A K+F  M +K+ V++N++ISA+A+ G++  AR+LF  M
Sbjct: 150 SHAIVQNSLIEMYTRCGDLSLARKVFDGMREKDAVSWNTLISAHARMGQMRKARELFHSM 209

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKAR 128
           P + +VSW ++++GY        A E+F +M    F PD  S   ++    + G LE  R
Sbjct: 210 PDKTVVSWTALVSGYTAVGDFAGAVEVFRQMQMEGFEPDDVSIVAVLPACAQLGALELGR 269

Query: 129 ELFDLLPNKED----TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKN 184
            ++    NK          NA++  YAK G   EA +L   M  K+++SW++ + G   +
Sbjct: 270 WIYAYC-NKHGMLGKIYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLAAH 328

Query: 185 GEMHLASKFFEAMEERDVVSWN-----LMLDGYVELDDLDSAWKFFQKIPEQ-----NVV 234
           G    A K FE M+    V  N      +L        LD   ++F ++ E+     +V 
Sbjct: 329 GRAREAVKLFEVMDREGRVMPNGITFVGLLSACSHAGLLDEGLRYFDRMKEEYGVEPSVE 388

Query: 235 SWVTMLSGYARNGRMLEARRLFDQMPI-RNVVAWNAMIAAYVQRGQIEEAARLFIEMPER 293
            +  ++    R+GR+  A      MPI  +   W ++++A      ++ A      + E 
Sbjct: 389 HYGCVVDLLGRSGRIQRALDTIGGMPIPPDGKIWGSLLSACRSHSDVDTAVVAAERLVEL 448

Query: 294 NP 295
            P
Sbjct: 449 EP 450


>gi|297838697|ref|XP_002887230.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297333071|gb|EFH63489.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1347

 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 221/790 (27%), Positives = 393/790 (49%), Gaps = 85/790 (10%)

Query: 9    GNKGSYVFNQNK--KITQLGKSGRVEEAIKIFSQMS---------QKNTVTYNSMISAYA 57
            G KG  V  + K  K+TQ     R   ++++ SQ+          +++ +    +I +YA
Sbjct: 544  GGKGLIVDPRTKYLKMTQYMPLFRSCSSLRLVSQLHAHLLVTGRLRRDPLPVTKLIESYA 603

Query: 58   KNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR-----PDLFSWA 112
              G  + +R +FE  P  +   +  +I   +    +  A +L+ ++             +
Sbjct: 604  FMGSPDSSRLVFEAFPYPDSFMYGVLIKCNVWCHLLDAAIDLYHRLVSEKTQISKFVFPS 663

Query: 113  LMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK 169
            ++  C   +  L   R++   +      +D     +++  Y + GN ++A+K+ D MP +
Sbjct: 664  VLRACAGSREHLSVGRKVHGRIIKSGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVR 723

Query: 170  NIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFF 225
            ++V+W++++S   +N E+  A + F+ M     E D V+   +++G  EL  L  A    
Sbjct: 724  DLVAWSTLVSSCLENCEVLKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVH 783

Query: 226  QKIPEQ----NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQI- 280
             +I  +    +     ++L+ Y++ G +L + ++F+++  +N V+W AMI++Y  RG+  
Sbjct: 784  GQITRKMFDFDETLCNSLLTMYSKCGDLLSSEKIFEKIAKKNAVSWTAMISSY-NRGEFS 842

Query: 281  EEAARLFIEM----PERNPVSWTTMI-----DGYVRIAKLDEA---RRLLDQMPYKNIAA 328
            E+A R F EM     E N V+  +++     +G +R  K       RR LD   Y++++ 
Sbjct: 843  EKALRSFSEMLKSGIEPNLVTLYSILSSCGLNGLIREGKSVHGFAIRRELDPN-YESLSP 901

Query: 329  QTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN--- 385
              A++  Y +  R+ +   I   +G  ++V WN  I  YA  G + EA+ LFRQMV    
Sbjct: 902  --ALVELYAECGRLGDCETILHVVGDRNIVLWNSHISLYAHRGMVIEALCLFRQMVTWRI 959

Query: 386  -----------------------------------KDIVTWNTMIAGYAQIRQMDDAVKI 410
                                                D    N++I  Y++   ++ A  +
Sbjct: 960  KPDSFTLASIISACENTGLVRLGKQIHGHVIRTDVSDEFVQNSVIDMYSKSGFVNLACTV 1019

Query: 411  FEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAA 470
            F+++ K R+ V+WN+++ GF QN   L+A+ +F  M     + +  T    + AC+ + +
Sbjct: 1020 FDQI-KHRSIVTWNSMLCGFSQNGNSLEAINLFDYMYHSCLEINKVTFLAVIQACSSIGS 1078

Query: 471  LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG 530
            L+ GR +HH  I  G + DLF   +LI MYAKCG +  AE +F+      ++SW+S+I  
Sbjct: 1079 LEKGRWVHHKLIVCG-IKDLFTDTALIDMYAKCGDLNTAETVFRAMSNRSIVSWSSMINA 1137

Query: 531  YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP 590
            Y ++G    AI  F +MV  G  P+ V F+ VLSAC H G V+ G   F  M +++ + P
Sbjct: 1138 YGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACGHSGSVEEGKYYFNLM-KLFGVSP 1196

Query: 591  LVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL 650
              EH+AC IDLLSR+G L EA+  +K M    +A +WG+L+  CR+HQ + + +     +
Sbjct: 1197 NSEHFACFIDLLSRSGDLKEAYRTIKEMPFLADASVWGSLVNGCRIHQKMDIIKAIKNDI 1256

Query: 651  SELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSG 710
            S++    T  Y LLSN++AE G W+E  ++R +M+    +K PG S IE+  ++  F +G
Sbjct: 1257 SDIVTDDTGYYTLLSNIYAEEGEWEEFRRMRSAMKSLNLKKVPGYSAIEIDKKVFRFGAG 1316

Query: 711  DPKQCRTAEI 720
            +    +T EI
Sbjct: 1317 EETCFQTEEI 1326


>gi|242045336|ref|XP_002460539.1| hypothetical protein SORBIDRAFT_02g030160 [Sorghum bicolor]
 gi|241923916|gb|EER97060.1| hypothetical protein SORBIDRAFT_02g030160 [Sorghum bicolor]
          Length = 630

 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 193/594 (32%), Positives = 304/594 (51%), Gaps = 53/594 (8%)

Query: 167 PSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQ 226
           P   +V+  S ++   + G+   A   F+AM  RD V+WN ML  Y        A   F 
Sbjct: 7   PFAGLVAATSRIASLGRAGDAASARAVFDAMPRRDAVAWNAMLTAYARAGQPRDALALFS 66

Query: 227 KIPEQNVVSWVTMLSGYARN-----GRMLEARRLFDQMPIRNVV-AWNAMIAAYVQRGQI 280
           + P  +  S    LS  A       G  L AR L  ++ +R ++   N++I+ Y +  + 
Sbjct: 67  RAPAPDAFSLTAALSAAAALRSPTAGAQLHARLL--RVGLRALLPVGNSLISMYAKCARA 124

Query: 281 EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340
           E+AAR F EM ERN +SW +++D YV    L  A+ L D+MP +N  A   ++ GY ++ 
Sbjct: 125 EDAARAFGEMRERNALSWCSLLDAYVASDDLRLAQELFDEMPNRNNVAWNTLLMGYSRSG 184

Query: 341 RMDEANQIFDKIGTHDVVC--------------------------------WNVM----- 363
             +    +F+K+    + C                                WN M     
Sbjct: 185 NANHCLLLFNKMRMAGLTCDDATLCILVDACTELANPSAGSAIHKIVVQSGWNAMAEVSN 244

Query: 364 --IKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
             I  Y +   +D+A+ +F  M  + IV+WN++I  Y ++  ++ A  +F  +    N +
Sbjct: 245 SLISLYTKFSLLDDAVRIFESMEVQTIVSWNSLIDAYMKLGCVEKATSLFGSV-PETNVI 303

Query: 422 SWNALISGFLQNEFHLDALKIFV-LMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480
           SW A+I G  +N    +AL +FV ++  E    D  T    L ACA  A+L  GR +H  
Sbjct: 304 SWTAMIGGLARNGLADEALILFVEMLAHEHIHPDDFTFGAVLHACATAASLASGRMVHCR 363

Query: 481 AIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEA 540
             +SG+V+ L+V NSLI MYAKCG ++    +F      D++SWN+++ G+AING   EA
Sbjct: 364 VFQSGFVSYLYVANSLIDMYAKCGDLEGGTNVFSTIVNKDLVSWNTMLFGFAINGLPNEA 423

Query: 541 IKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMID 600
           + +++ M    V PD VTF G+L+ACSH GL++ G   FE M  V+ I+P  EH +C++D
Sbjct: 424 LVVYDSMKSHDVCPDEVTFTGLLTACSHSGLLEHGKTFFELMVSVHGIQPKPEHLSCILD 483

Query: 601 LLSRAGRLDEAFEMV---KGMKIKPNAGIWGTLLGACRM-HQNIKLGRIAVEKLSELEPQ 656
           + +R+G + +A EM+     M    N+ I   LL AC + H N  + R AV+ +   +  
Sbjct: 484 MYARSGNITKAMEMLDRYSEMIQTHNSDIREALLSACSLEHLNFSVARKAVKDMVATKSA 543

Query: 657 KTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSG 710
               Y +LSN+    G+W++ E+VR++M   G +K PGCSWIEV+  +  F+SG
Sbjct: 544 GDVGYVMLSNLFCATGQWNQAERVRIAMAEYGIKKSPGCSWIEVQGAVKVFVSG 597



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 139/521 (26%), Positives = 228/521 (43%), Gaps = 96/521 (18%)

Query: 47  VTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRP 106
           V   S I++  + G    AR +F+ MP+R+ V+WN+M+  Y    + ++A  LF +   P
Sbjct: 12  VAATSRIASLGRAGDAASARAVFDAMPRRDAVAWNAMLTAYARAGQPRDALALFSRAPAP 71

Query: 107 DLFSWALMITCYT-----RKGELEKAR----ELFDLLPNKEDTACWNAMVAGYAKIGNYN 157
           D FS    ++          G    AR     L  LLP        N++++ YAK     
Sbjct: 72  DAFSLTAALSAAAALRSPTAGAQLHARLLRVGLRALLP------VGNSLISMYAKCARAE 125

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGY----- 212
           +A +    M  +N +SW S+L  Y  + ++ LA + F+ M  R+ V+WN +L GY     
Sbjct: 126 DAARAFGEMRERNALSWCSLLDAYVASDDLRLAQELFDEMPNRNNVAWNTLLMGYSRSGN 185

Query: 213 ---------------VELDDLD--------------SAWKFFQKIPEQ---NVVSWV--T 238
                          +  DD                SA     KI  Q   N ++ V  +
Sbjct: 186 ANHCLLLFNKMRMAGLTCDDATLCILVDACTELANPSAGSAIHKIVVQSGWNAMAEVSNS 245

Query: 239 MLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW 298
           ++S Y +   + +A R+F+ M ++ +V+WN++I AY++ G +E+A  LF  +PE N +SW
Sbjct: 246 LISLYTKFSLLDDAVRIFESMEVQTIVSWNSLIDAYMKLGCVEKATSLFGSVPETNVISW 305

Query: 299 TTMIDGYVRIAKLDEARRLLDQM-PYKNIAAQT----AMISGYVQNKRMDEANQIFDKIG 353
           T MI G  R    DEA  L  +M  +++I        A++        +     +  ++ 
Sbjct: 306 TAMIGGLARNGLADEALILFVEMLAHEHIHPDDFTFGAVLHACATAASLASGRMVHCRVF 365

Query: 354 THDVVCW----NVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVK 409
               V +    N +I  YA+CG ++   N+F  +VNKD+V+WNTM+ G+A          
Sbjct: 366 QSGFVSYLYVANSLIDMYAKCGDLEGGTNVFSTIVNKDLVSWNTMLFGFA---------- 415

Query: 410 IFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469
                            I+G L NE    AL ++  M       D  T    L+AC+H  
Sbjct: 416 -----------------ING-LPNE----ALVVYDSMKSHDVCPDEVTFTGLLTACSHSG 453

Query: 470 ALQLGRQIHHLAIK-SGYVNDLFVGNSLITMYAKCGRIQNA 509
            L+ G+    L +   G        + ++ MYA+ G I  A
Sbjct: 454 LLEHGKTFFELMVSVHGIQPKPEHLSCILDMYARSGNITKA 494



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 113/454 (24%), Positives = 197/454 (43%), Gaps = 88/454 (19%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRN-- 76
             +I  LG++G    A  +F  M +++ V +N+M++AYA+ G+  DA  LF + P  +  
Sbjct: 15  TSRIASLGRAGDAASARAVFDAMPRRDAVAWNAMLTAYARAGQPRDALALFSRAPAPDAF 74

Query: 77  ---------------------------------LVSWNSMIAGYLHNDKVKEARELFDKM 103
                                            L   NS+I+ Y    + ++A   F +M
Sbjct: 75  SLTAALSAAAALRSPTAGAQLHARLLRVGLRALLPVGNSLISMYAKCARAEDAARAFGEM 134

Query: 104 FRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLL 163
              +  SW  ++  Y    +L  A+ELFD +PN+ + A WN ++ GY++ GN N    L 
Sbjct: 135 RERNALSWCSLLDAYVASDDLRLAQELFDEMPNRNNVA-WNTLLMGYSRSGNANHCLLLF 193

Query: 164 DAM------------------------PS------KNIV--SWNSM-------LSGYTKN 184
           + M                        PS      K +V   WN+M       +S YTK 
Sbjct: 194 NKMRMAGLTCDDATLCILVDACTELANPSAGSAIHKIVVQSGWNAMAEVSNSLISLYTKF 253

Query: 185 GEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYA 244
             +  A + FE+ME + +VSWN ++D Y++L  ++ A   F  +PE NV+SW  M+ G A
Sbjct: 254 SLLDDAVRIFESMEVQTIVSWNSLIDAYMKLGCVEKATSLFGSVPETNVISWTAMIGGLA 313

Query: 245 RNGRMLEARRLFDQMPIRNVV-----AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW- 298
           RNG   EA  LF +M     +      + A++ A      +     +   + +   VS+ 
Sbjct: 314 RNGLADEALILFVEMLAHEHIHPDDFTFGAVLHACATAASLASGRMVHCRVFQSGFVSYL 373

Query: 299 ---TTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH 355
               ++ID Y +   L+    +   +  K++ +   M+ G+  N   +EA  ++D + +H
Sbjct: 374 YVANSLIDMYAKCGDLEGGTNVFSTIVNKDLVSWNTMLFGFAINGLPNEALVVYDSMKSH 433

Query: 356 DV----VCWNVMIKGYAQCGRMDEAINLFRQMVN 385
           DV    V +  ++   +  G ++     F  MV+
Sbjct: 434 DVCPDEVTFTGLLTACSHSGLLEHGKTFFELMVS 467



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 63/129 (48%), Gaps = 9/129 (6%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           SY++  N  I    K G +E    +FS +  K+ V++N+M+  +A NG  N+A  +++ M
Sbjct: 371 SYLYVANSLIDMYAKCGDLEGGTNVFSTIVNKDLVSWNTMLFGFAINGLPNEALVVYDSM 430

Query: 73  PQRNL----VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGE 123
              ++    V++  ++    H+  ++  +  F+ M      +P     + ++  Y R G 
Sbjct: 431 KSHDVCPDEVTFTGLLTACSHSGLLEHGKTFFELMVSVHGIQPKPEHLSCILDMYARSGN 490

Query: 124 LEKARELFD 132
           + KA E+ D
Sbjct: 491 ITKAMEMLD 499


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 199/660 (30%), Positives = 324/660 (49%), Gaps = 67/660 (10%)

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
             N       N +   Y+K  + + A +L D M  +N  SW  +++G  +NG      +F
Sbjct: 99  FSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEF 158

Query: 194 FEAMEERDVVSWNLMLDGY---------VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYA 244
           F  M+ + +        G          +EL ++  A    +       VS   +L+ YA
Sbjct: 159 FCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVS-TALLNMYA 217

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM-PERNPVSWTTMID 303
           +   + ++ ++F+ M   NVV+WNAMI  +       +A  LF+ M  E       T I 
Sbjct: 218 KLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIG 277

Query: 304 GYVRIAKLDEARRLLDQMPY-------KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHD 356
               I  L +  +  +   Y        N    TA+I    +   + EA  IF+   +H 
Sbjct: 278 VAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFN---SHF 334

Query: 357 VVC-----WNVMIKGYAQCGRMDEAINLFRQMVNKDIV--------TWNTMIA------- 396
           + C     WN MI GY + G  ++A+ LF +M   DI          +N + A       
Sbjct: 335 ITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLG 394

Query: 397 -------------------------GYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFL 431
                                     YA+   ++D  K+F  M + R+ +SW +L++ + 
Sbjct: 395 KKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRM-EDRDLISWTSLVTAYS 453

Query: 432 QNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLF 491
           Q      A++IF  M  EG   +  T +  L +CA+L  L+ G+Q+H +  K G   D  
Sbjct: 454 QCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKC 513

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
           + ++L+ MYAKCG + +A+ +F      D +SW ++IAG+A +G   +A++LF  MV  G
Sbjct: 514 IESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLG 573

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
           V P+ VTF+ VL ACSH GLV+ GL+ F+ M + Y + P +EHYAC++DLLSR G L++A
Sbjct: 574 VEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDA 633

Query: 612 FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEA 671
            E +  M ++PN  +W TLLGACR+H N++LG +A +K+   + + ++ Y LLSN + E+
Sbjct: 634 MEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIES 693

Query: 672 GRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           G + +   +R  M+  G +K+PGCSWI V   +H F +GD +     +I   L+ L  ++
Sbjct: 694 GSYKDGLSLRHVMKEQGVKKEPGCSWISVNGTLHKFYAGDQQHPEKDKIYAKLEELKLKL 753



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 139/611 (22%), Positives = 267/611 (43%), Gaps = 71/611 (11%)

Query: 42  SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFD 101
           +  + V  N +  AY+K   ++ A +LF+QM QRN  SW  +IAG   N    +  E F 
Sbjct: 101 NHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFC 160

Query: 102 KM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIG 154
           +M      PD F+++ ++        +E    +   +  +     T    A++  YAK+ 
Sbjct: 161 EMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQ 220

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE 214
              ++ K+ + M   N+VSWN+M++G+T N     A   F  M    V        G  +
Sbjct: 221 EIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAK 280

Query: 215 ----LDDLDSAWKF----FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI--RNV 264
               L D++ A +      +   + N +    ++   ++ G + EAR +F+   I  R  
Sbjct: 281 AIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFN 340

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGY-----VRIAKLDEAR 315
             WNAMI+ Y++ G  E+A  LF +M +     +  ++ ++ +       + + K   AR
Sbjct: 341 APWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHAR 400

Query: 316 RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
            +   +    ++   A+ + Y +   +++  ++F+++   D++ W  ++  Y+QC   D+
Sbjct: 401 AIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDK 460

Query: 376 AINLFRQM---------------------------------------VNKDIVTWNTMIA 396
           AI +F  M                                       ++ D    + ++ 
Sbjct: 461 AIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVD 520

Query: 397 GYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHS 456
            YA+   + DA K+F  +    +TVSW A+I+G  Q+    DAL++F  M Q G + +  
Sbjct: 521 MYAKCGCLGDAKKVFNRI-SNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAV 579

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKS-GYVNDLFVGNSLITMYAKCGRIQNAELLFKD 515
           T  C L AC+H   ++ G Q   L  K+ G V ++     ++ + ++ G + +A + F  
Sbjct: 580 TFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDA-MEFIS 638

Query: 516 ADPVDV--ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVD 573
             PV+   + W +L+    ++GN  E  +L  + ++   A +  T++ + +     G   
Sbjct: 639 RMPVEPNEMVWQTLLGACRVHGN-VELGELAAQKILSFKAENSATYVLLSNTYIESGSYK 697

Query: 574 GGLKLFECMTE 584
            GL L   M E
Sbjct: 698 DGLSLRHVMKE 708



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 158/382 (41%), Gaps = 92/382 (24%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S+ F     +    K   +E++ K+F+ M++ N V++N+MI+ +  N    DA  LF +M
Sbjct: 204 SHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRM 263

Query: 73  PQRNL----------------------------------VSWNSMIAGYL--HNDK---V 93
               +                                  V  N+++   L   N K   +
Sbjct: 264 MGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSL 323

Query: 94  KEARELFDKMFRPDLFS--WALMITCYTRKGELEKARELF------DL-LPNKEDTACWN 144
           +EAR +F+  F    F+  W  MI+ Y R G  EKA ELF      D+ L +    + +N
Sbjct: 324 QEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFN 383

Query: 145 AMVA-GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           A+ A     +G    A+ +   +    +   N++ + Y K G +    K F  ME+RD++
Sbjct: 384 AIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLI 443

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKI------PEQNVVSWV-------------------- 237
           SW  ++  Y +  + D A + F  +      P Q   S V                    
Sbjct: 444 SWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGII 503

Query: 238 -------------TMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA 284
                         ++  YA+ G + +A+++F+++   + V+W A+IA + Q G +++A 
Sbjct: 504 CKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDAL 563

Query: 285 RLFIEM----PERNPVSWTTMI 302
           +LF  M     E N V++  ++
Sbjct: 564 QLFRRMVQLGVEPNAVTFLCVL 585



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 72/372 (19%), Positives = 158/372 (42%), Gaps = 58/372 (15%)

Query: 9   GNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKL 68
           G + +YV   N       K G +E+  K+F++M  ++ +++ S+++AY++    + A ++
Sbjct: 405 GLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEI 464

Query: 69  FEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAR 128
           F  M    +                            P+ F+++ ++        LE  +
Sbjct: 465 FSNMRAEGIA---------------------------PNQFTFSSVLVSCANLCLLEYGQ 497

Query: 129 ELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
           ++  ++       D    +A+V  YAK G   +AKK+ + + + + VSW ++++G+ ++G
Sbjct: 498 QVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHG 557

Query: 186 EMHLASKFFEAM----EERDVVSWNLML-----DGYVE--LDDLDSAWKFFQKIPE-QNV 233
            +  A + F  M     E + V++  +L      G VE  L       K +  +PE ++ 
Sbjct: 558 IVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHY 617

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIE 289
              V +LS   R G + +A     +MP+  N + W  ++ A    G +   E AA+  + 
Sbjct: 618 ACIVDLLS---RVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILS 674

Query: 290 MPERNPVSWTTMIDGYVRIAKLDEA---RRLLDQMPYKN------IAAQTAMISGYVQNK 340
               N  ++  + + Y+      +    R ++ +   K       I+    +   Y  ++
Sbjct: 675 FKAENSATYVLLSNTYIESGSYKDGLSLRHVMKEQGVKKEPGCSWISVNGTLHKFYAGDQ 734

Query: 341 RMDEANQIFDKI 352
           +  E ++I+ K+
Sbjct: 735 QHPEKDKIYAKL 746



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 4/112 (3%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVN--DLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
           L  C     L+  + +H   +KS + N   L + N +   Y+KC  I  A  LF      
Sbjct: 75  LRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQR 134

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
           +  SW  LIAG A NG   +  + F EM  +G+ PD   + G+L  C  +GL
Sbjct: 135 NTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQIC--IGL 184


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 167/450 (37%), Positives = 273/450 (60%), Gaps = 12/450 (2%)

Query: 280 IEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ- 338
           I+ A+R+F      N   +T +IDG+V      +A +L  +M + +I     +++  ++ 
Sbjct: 97  IDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKA 156

Query: 339 ---NKRMDEANQIFDK-----IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
                 + E  ++  +     + ++ +V   +M + Y +CG + +A  +F +M  +D+V 
Sbjct: 157 CGSQLALREGREVHSRALKLGLSSNRLVRLRIM-ELYGKCGELGDARRVFEEM-PEDVVA 214

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450
              MI+ Y+    +++A  +F  + +R++TV W A+I GF++NE    AL+ F  M  E 
Sbjct: 215 STVMISSYSDQGLVEEAGAVFSRV-RRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGEN 273

Query: 451 KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510
            + +  T+ C LSAC+ L AL++GR +H    K     +LFVGN+LI MY++CG I  A+
Sbjct: 274 VRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQ 333

Query: 511 LLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570
            +F +    DVI++N++I+G ++NG + +AI+LF  M+   + P  VTF+GVL+ACSH G
Sbjct: 334 TVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGG 393

Query: 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTL 630
           LVD G K+F  MT  Y +EP +EHY CM+DLL R GRL+EA+++++ MK+ P+  + GTL
Sbjct: 394 LVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTL 453

Query: 631 LGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQ 690
           L AC+MH+N++LG    + L +     +  Y LLS+++A +G+W E  +VR  M+ +G Q
Sbjct: 454 LSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQ 513

Query: 691 KQPGCSWIEVKNQIHTFLSGDPKQCRTAEI 720
           K+PGCS IEV N+IH FL GD +  R   I
Sbjct: 514 KEPGCSSIEVNNEIHEFLLGDLRHPRKERI 543



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 111/464 (23%), Positives = 209/464 (45%), Gaps = 50/464 (10%)

Query: 111 WALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN 170
           + L+ +C ++   ++ A  +F    N  +   + A++ G+   GNY +A +L   M   +
Sbjct: 85  FELLRSC-SKCHAIDYASRIFQYTHNP-NVYLYTALIDGFVSSGNYFDAIQLYSRMLHDS 142

Query: 171 IVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPE 230
           I+  N +++   K     LA +     E R+V S  L L        L S          
Sbjct: 143 ILPDNYLMASILKACGSQLALR-----EGREVHSRALKLG-------LSS---------- 180

Query: 231 QNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
            N +  + ++  Y + G + +ARR+F++MP  +VVA   MI++Y  +G +EEA  +F  +
Sbjct: 181 -NRLVRLRIMELYGKCGELGDARRVFEEMP-EDVVASTVMISSYSDQGLVEEAGAVFSRV 238

Query: 291 PERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFD 350
             ++ V WT MIDG+VR  +++ A      M  +N+      I   +       A +I  
Sbjct: 239 RRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGR 298

Query: 351 KIGTH--------DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIR 402
            + ++        ++   N +I  Y++CG +DEA  +F +M ++D++T+NTMI+G +   
Sbjct: 299 WVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNG 358

Query: 403 QMDDAVKIFEEMGKRR---NTVSWNALISGFLQNEFHLDALKIFVLMTQE-GKKADHSTL 458
           +   A+++F  M  RR     V++  +++            KIF  MT++ G +      
Sbjct: 359 KSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHY 418

Query: 459 ACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL------L 512
            C +     +  L+   + + L        D  +   L T+ + C   +N EL      +
Sbjct: 419 GCMVDLLGRVGRLE---EAYDLIRTMKMTPDHIM---LGTLLSACKMHKNLELGEQVAKV 472

Query: 513 FKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556
            +D    D  ++  L   YA +G   EA ++  +M   G+  +P
Sbjct: 473 LEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEP 516



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 126/250 (50%), Gaps = 17/250 (6%)

Query: 26  GKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIA 85
           GK G + +A ++F +M + + V    MIS+Y+  G V +A  +F ++ +++ V W +MI 
Sbjct: 193 GKCGELGDARRVFEEMPE-DVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMID 251

Query: 86  GYLHNDKVKEARELFDKM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNKE--- 138
           G++ N+++  A E F  M     RP+ F+   +++  ++ G LE  R +   +   E   
Sbjct: 252 GFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIEL 311

Query: 139 DTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME 198
           +    NA++  Y++ G+ +EA+ + D M  ++++++N+M+SG + NG+   A + F  M 
Sbjct: 312 NLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMI 371

Query: 199 ERDVVSWNLMLDGYVELDD----LDSAWKFFQKIP-----EQNVVSWVTMLSGYARNGRM 249
            R +   N+   G +        +D  +K F  +      E  +  +  M+    R GR+
Sbjct: 372 GRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRL 431

Query: 250 LEARRLFDQM 259
            EA  L   M
Sbjct: 432 EEAYDLIRTM 441



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 80/357 (22%), Positives = 151/357 (42%), Gaps = 73/357 (20%)

Query: 363 MIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVS 422
           +++  ++C  +D A  +F+   N ++  +  +I G                         
Sbjct: 87  LLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDG------------------------- 121

Query: 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482
                  F+ +  + DA++++  M  +    D+  +A  L AC    AL+ GR++H  A+
Sbjct: 122 -------FVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRAL 174

Query: 483 KSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVIS------------------- 523
           K G  ++  V   ++ +Y KCG + +A  +F++  P DV++                   
Sbjct: 175 KLGLSSNRLVRLRIMELYGKCGELGDARRVFEEM-PEDVVASTVMISSYSDQGLVEEAGA 233

Query: 524 ------------WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
                       W ++I G+  N     A++ F  M  E V P+  T + VLSACS +G 
Sbjct: 234 VFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGA 293

Query: 572 VDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLL 631
           ++ G  +   M + + IE  +     +I++ SR G +DEA  +   MK + +   + T++
Sbjct: 294 LEIGRWVHSYMRK-FEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDR-DVITYNTMI 351

Query: 632 GACRMH----QNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSM 684
               M+    Q I+L R+ + +   L P   +   +L N  +  G  D   K+  SM
Sbjct: 352 SGLSMNGKSRQAIELFRVMIGR--RLRPTNVTFVGVL-NACSHGGLVDFGFKIFHSM 405



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 9/134 (6%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           +F  N  I    + G ++EA  +F +M  ++ +TYN+MIS  + NG+   A +LF  M  
Sbjct: 313 LFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIG 372

Query: 75  RNLVSWNSMIAGYL----HNDKVKEARELFDKMFR-----PDLFSWALMITCYTRKGELE 125
           R L   N    G L    H   V    ++F  M R     P +  +  M+    R G LE
Sbjct: 373 RRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLE 432

Query: 126 KARELFDLLPNKED 139
           +A +L   +    D
Sbjct: 433 EAYDLIRTMKMTPD 446



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 84/168 (50%), Gaps = 15/168 (8%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           N    N++I+ Y++ G +++A+ +F++M  R+++++N+MI+G   N K ++A ELF  M 
Sbjct: 312 NLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMI 371

Query: 104 ---FRPDLFSWALMITCYTRKGELEKARELFDLL-------PNKEDTACWNAMVAGYAKI 153
               RP   ++  ++   +  G ++   ++F  +       P  E   C   MV    ++
Sbjct: 372 GRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGC---MVDLLGRV 428

Query: 154 GNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER 200
           G   EA  L+  M  + + +   ++LS    +  + L  +  + +E+R
Sbjct: 429 GRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDR 476



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 106/268 (39%), Gaps = 64/268 (23%)

Query: 477 IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGN 536
           IH   I++G+  D F+   L+   +KC  I  A  +F+     +V  + +LI G+  +GN
Sbjct: 68  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127

Query: 537 ATEAIKLFEEMVMEGVAPDPVTFIGVLSAC-SHVGLVDG----------GL--------- 576
             +AI+L+  M+ + + PD      +L AC S + L +G          GL         
Sbjct: 128 YFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLR 187

Query: 577 ---------------KLFECMTE----------VYAIEPLVEH---------------YA 596
                          ++FE M E           Y+ + LVE                + 
Sbjct: 188 IMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWT 247

Query: 597 CMIDLLSRAGRLDEAFEMVKGMK---IKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653
            MID   R   ++ A E  +GM+   ++PN      +L AC     +++GR     + + 
Sbjct: 248 AMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKF 307

Query: 654 EPQKTSCYA-LLSNMHAEAGRWDEVEKV 680
           E +        L NM++  G  DE + V
Sbjct: 308 EIELNLFVGNALINMYSRCGSIDEAQTV 335


>gi|357516987|ref|XP_003628782.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522804|gb|AET03258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1002

 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 223/738 (30%), Positives = 369/738 (50%), Gaps = 42/738 (5%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQ-RNLVSWNSMIAGYLHNDKVKEAR----EL 99
           N    + ++  YAK      A   F  + + +NL S+ +++     N   KEA     E+
Sbjct: 139 NEFVESKLVILYAKCNLTRVAVHFFRNVVKNQNLFSYAAIVGLQARNGLYKEALLSYVEM 198

Query: 100 FDKMFRPDLF--SWALMITCYTRKGELEKARELFDLLPNKEDTAC---WNAMVAGYAKIG 154
            +K F PD F     L      R     +    F +    E   C     ++V  Y K G
Sbjct: 199 MEKGFCPDNFVVPNGLKACGGLRWIGFGRGIHGFVVKMGNEFDGCVYVATSLVDMYGKCG 258

Query: 155 NYNEAKKLLDAMPSK--NIVSWNSMLSGYTKNGEMHLASKFFEAME-----ERDVVSWNL 207
              +A+K+ D MP++  N V WNSM+ GY +NG    A   FE M      E   VS + 
Sbjct: 259 VLEDAEKVFDEMPNRKRNDVVWNSMIVGYVQNGMNVEAVGLFEKMRFEGGVEPSEVSLSG 318

Query: 208 MLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPI-R 262
                  L+ ++   +    +     E N V   ++++ Y++ G + E   +F  M + +
Sbjct: 319 FFSACANLEAVEEGKQGHALVILMGFELNYVLGSSIMNFYSKVGLIEEVELVFRSMAVLK 378

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPER-----NPVSWTTMIDGYVRIAKLDEARRL 317
           + V WN MI++YVQ G  E+A  +   M E      + V+ ++++        +   ++L
Sbjct: 379 DEVTWNLMISSYVQFGMFEKALEMCHWMREEENLRFDCVTLSSLLALAADTRDVKLGKKL 438

Query: 318 ----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH-DVVCWNVMIKGYAQCGR 372
               +    Y ++A  + ++  Y +   MD A  +F   G   D+V WN M+   A+ G 
Sbjct: 439 HGFCIRNEFYSDMAVLSGVLDMYAKCGIMDCARGVFHFAGKKKDIVLWNTMLAACAEKGL 498

Query: 373 MDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNA 425
             EA+ LF QM    V  ++V+WN++I G+ +  Q+ +A  +F EM   G   N ++W  
Sbjct: 499 SGEALKLFFQMQMESVPPNVVSWNSLIFGFFRNGQVVEAQDMFSEMQLSGVTPNLITWTT 558

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485
           +ISG  QN    +A ++F  M   G + +  ++  ALSAC ++A L  GR IH   +++ 
Sbjct: 559 MISGLAQNGLGYEASRVFQQMQGAGMRPNSISITSALSACTNMALLNYGRSIHGYVMRNF 618

Query: 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545
               L +  S+I MYAKCG + +A+ +F      ++  +N++I+ YA +G + EA+ LF+
Sbjct: 619 MSFSLQITTSIIDMYAKCGNLDDAKFVFIICSTKELPVYNAMISAYASHGKSAEALALFQ 678

Query: 546 EMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRA 605
           E+V +G+ PD +TF  VLSACSH  L+  GL+LF+ M     ++P  +HY C++ LL+  
Sbjct: 679 ELVKQGIMPDHITFTSVLSACSHGRLLKEGLELFKYMVCELQMKPSEKHYGCLVKLLTND 738

Query: 606 GRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLS 665
           G+LDEA  ++  M   P+A I G+LL AC  +   +L     + L ++EP     Y  LS
Sbjct: 739 GQLDEALRIILTMPSPPDAHILGSLLAACGQNHETELANYIAKWLLKVEPNNPGNYVALS 798

Query: 666 NMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLK 725
           N++A  G+WDEV  +R  M+  G +K PGCSWIEV  +++ F++ D       EI   L 
Sbjct: 799 NVYAALGKWDEVSNIRGFMKEKGLKKIPGCSWIEVGQELNVFIASDKSHPEKEEIYKILD 858

Query: 726 TLAAQI---RNTPLAVII 740
            L  ++   ++ P  +I+
Sbjct: 859 LLGFEMYYAKSNPHPIIL 876



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 140/541 (25%), Positives = 242/541 (44%), Gaps = 83/541 (15%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMS--QKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           V+     +   GK G +E+A K+F +M   ++N V +NSMI  Y +NG   +A  LFE+M
Sbjct: 244 VYVATSLVDMYGKCGVLEDAEKVFDEMPNRKRNDVVWNSMIVGYVQNGMNVEAVGLFEKM 303

Query: 73  -------P---------------------------------QRNLVSWNSMIAGYLHNDK 92
                  P                                 + N V  +S++  Y     
Sbjct: 304 RFEGGVEPSEVSLSGFFSACANLEAVEEGKQGHALVILMGFELNYVLGSSIMNFYSKVGL 363

Query: 93  VKEARELFDKM-FRPDLFSWALMITCYTRKGELEKARELFDLLPNKE----DTACWNAMV 147
           ++E   +F  M    D  +W LMI+ Y + G  EKA E+   +  +E    D    ++++
Sbjct: 364 IEEVELVFRSMAVLKDEVTWNLMISSYVQFGMFEKALEMCHWMREEENLRFDCVTLSSLL 423

Query: 148 AGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG----YTKNGEMHLASKFFE-AMEERDV 202
           A  A   +    KKL          S  ++LSG    Y K G M  A   F  A +++D+
Sbjct: 424 ALAADTRDVKLGKKLHGFCIRNEFYSDMAVLSGVLDMYAKCGIMDCARGVFHFAGKKKDI 483

Query: 203 VSWNLMLDGYVELDDLDSAWKFF-----QKIPEQNVVSWVTMLSGYARNGRMLEARRLFD 257
           V WN ML    E      A K F     + +P  NVVSW +++ G+ RNG+++EA+ +F 
Sbjct: 484 VLWNTMLAACAEKGLSGEALKLFFQMQMESVPP-NVVSWNSLIFGFFRNGQVVEAQDMFS 542

Query: 258 QMPIR----NVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIA 309
           +M +     N++ W  MI+   Q G   EA+R+F +M       N +S T+ +     +A
Sbjct: 543 EMQLSGVTPNLITWTTMISGLAQNGLGYEASRVFQQMQGAGMRPNSISITSALSACTNMA 602

Query: 310 KLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIK 365
            L+  R +    +      ++   T++I  Y +   +D+A  +F    T ++  +N MI 
Sbjct: 603 LLNYGRSIHGYVMRNFMSFSLQITTSIIDMYAKCGNLDDAKFVFIICSTKELPVYNAMIS 662

Query: 366 GYAQCGRMDEAINLFRQMVNKDI----VTWNTMIAGYAQIRQMDDAVKIFE----EMGKR 417
            YA  G+  EA+ LF+++V + I    +T+ ++++  +  R + + +++F+    E+  +
Sbjct: 663 AYASHGKSAEALALFQELVKQGIMPDHITFTSVLSACSHGRLLKEGLELFKYMVCELQMK 722

Query: 418 RNTVSWNALISGFLQNEFHLD-ALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQ 476
            +   +  L+   L N+  LD AL+I + M       D   L   L+AC      +L   
Sbjct: 723 PSEKHYGCLVK-LLTNDGQLDEALRIILTMP---SPPDAHILGSLLAACGQNHETELANY 778

Query: 477 I 477
           I
Sbjct: 779 I 779



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 158/339 (46%), Gaps = 26/339 (7%)

Query: 317 LLDQMPYKNIAAQT-----AMISGYVQNKRMDEANQIFDKIGTHDVVCWNV---MIKGYA 368
           +L+  P  N    T       IS   +N ++ EA     ++  H  +  ++   +++G  
Sbjct: 55  ILNHTPKHNFFPTTNTTLHHQISFLCKNLKLQEAISTLSQLPQHTPIGPDIYGELLQGCV 114

Query: 369 QCGRMDEAINLFRQMVNKDIVTWNT-------MIAGYAQIRQMDDAVKIFEEMGKRRNTV 421
               +   + +   ++ K   +++T       ++  YA+      AV  F  + K +N  
Sbjct: 115 YARDLSLGLQIHAHLIKKG-SSYSTNEFVESKLVILYAKCNLTRVAVHFFRNVVKNQNLF 173

Query: 422 SWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLA 481
           S+ A++    +N  + +AL  +V M ++G   D+  +   L AC  L  +  GR IH   
Sbjct: 174 SYAAIVGLQARNGLYKEALLSYVEMMEKGFCPDNFVVPNGLKACGGLRWIGFGRGIHGFV 233

Query: 482 IKSGYVND--LFVGNSLITMYAKCGRIQNAELLFKDADP----VDVISWNSLIAGYAING 535
           +K G   D  ++V  SL+ MY KCG +++AE +F D  P     DV+ WNS+I GY  NG
Sbjct: 234 VKMGNEFDGCVYVATSLVDMYGKCGVLEDAEKVF-DEMPNRKRNDVV-WNSMIVGYVQNG 291

Query: 536 NATEAIKLFEEMVME-GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEH 594
              EA+ LFE+M  E GV P  V+  G  SAC+++  V+ G K    +  +   E     
Sbjct: 292 MNVEAVGLFEKMRFEGGVEPSEVSLSGFFSACANLEAVEEG-KQGHALVILMGFELNYVL 350

Query: 595 YACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGA 633
            + +++  S+ G ++E   + + M +  +   W  ++ +
Sbjct: 351 GSSIMNFYSKVGLIEEVELVFRSMAVLKDEVTWNLMISS 389



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 79/161 (49%), Gaps = 15/161 (9%)

Query: 22  ITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNL---- 77
           I    K G +++A  +F   S K    YN+MISAYA +G+  +A  LF+++ ++ +    
Sbjct: 630 IDMYAKCGNLDDAKFVFIICSTKELPVYNAMISAYASHGKSAEALALFQELVKQGIMPDH 689

Query: 78  VSWNSMIAGYLHNDKVKEARELFDKM-----FRPDLFSWALMITCYTRKGELEKARELFD 132
           +++ S+++   H   +KE  ELF  M      +P    +  ++   T  G+L++A  +  
Sbjct: 690 ITFTSVLSACSHGRLLKEGLELFKYMVCELQMKPSEKHYGCLVKLLTNDGQLDEALRIIL 749

Query: 133 LLPNKEDTACWNAMVAGYAK-----IGNYNEAKKLLDAMPS 168
            +P+  D     +++A   +     + NY  AK LL   P+
Sbjct: 750 TMPSPPDAHILGSLLAACGQNHETELANY-IAKWLLKVEPN 789


>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
 gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
 gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 600

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 174/518 (33%), Positives = 284/518 (54%), Gaps = 42/518 (8%)

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--------PV------- 296
           A R+F+Q+   NV   N++I A+ Q  Q  +A  +F EM            P        
Sbjct: 70  AVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSG 129

Query: 297 -SW-----------------------TTMIDGYVRIAKLD--EARRLLDQMPYKNIAAQT 330
            SW                         +ID Y R   L   +A +L ++M  ++  +  
Sbjct: 130 QSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWN 189

Query: 331 AMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVT 390
           +M+ G V+   + +A ++FD++   D++ WN M+ GYA+C  M +A  LF +M  ++ V+
Sbjct: 190 SMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVS 249

Query: 391 WNTMIAGYAQIRQMDDAVKIFEEMG-KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449
           W+TM+ GY++   M+ A  +F++M    +N V+W  +I+G+ +     +A ++   M   
Sbjct: 250 WSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVAS 309

Query: 450 GKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA 509
           G K D + +   L+AC     L LG +IH +  +S   ++ +V N+L+ MYAKCG ++ A
Sbjct: 310 GLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKA 369

Query: 510 ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569
             +F D    D++SWN+++ G  ++G+  EAI+LF  M  EG+ PD VTFI VL +C+H 
Sbjct: 370 FDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHA 429

Query: 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629
           GL+D G+  F  M +VY + P VEHY C++DLL R GRL EA ++V+ M ++PN  IWG 
Sbjct: 430 GLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGA 489

Query: 630 LLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689
           LLGACRMH  + + +  ++ L +L+P     Y+LLSN++A A  W+ V  +R  M+  G 
Sbjct: 490 LLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGV 549

Query: 690 QKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727
           +K  G S +E+++ IH F   D    ++ +I   L +L
Sbjct: 550 EKPSGASSVELEDGIHEFTVFDKSHPKSDQIYQMLGSL 587



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/429 (27%), Positives = 215/429 (50%), Gaps = 27/429 (6%)

Query: 20  KKITQLGKSGRVEEAIKIFSQMSQKNTV----TYNSMISAYAKNGRVNDARKLFEQMPQR 75
           +++  L K   + +  ++ +Q+ ++N          +ISA +   + N A ++F Q+ + 
Sbjct: 21  ERLQDLPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEP 80

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFR----PDLFSWALMITCYTRKGELEKARELF 131
           N+   NS+I  +  N +  +A  +F +M R     D F++  ++   + +  L   + + 
Sbjct: 81  NVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMH 140

Query: 132 DLLPN---KEDTACWNAMVAGYAKIGNYN--EAKKLLDAMPSKNIVSWNSMLSGYTKNGE 186
           + +       D    NA++  Y++ G     +A KL + M  ++ VSWNSML G  K GE
Sbjct: 141 NHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGE 200

Query: 187 MHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARN 246
           +  A + F+ M +RD++SWN MLDGY    ++  A++ F+K+PE+N VSW TM+ GY++ 
Sbjct: 201 LRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKA 260

Query: 247 GRMLEARRLFDQMPI--RNVVAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTT 300
           G M  AR +FD+MP+  +NVV W  +IA Y ++G ++EA RL  +M       +  +  +
Sbjct: 261 GDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVIS 320

Query: 301 MIDGYVRIAKLDEARRLLDQMPYKNIAAQT----AMISGYVQNKRMDEANQIFDKIGTHD 356
           ++        L    R+   +   N+ +      A++  Y +   + +A  +F+ I   D
Sbjct: 321 ILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKD 380

Query: 357 VVCWNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFE 412
           +V WN M+ G    G   EAI LF +M    +  D VT+  ++        +D+ +  F 
Sbjct: 381 LVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFY 440

Query: 413 EMGKRRNTV 421
            M K  + V
Sbjct: 441 SMEKVYDLV 449



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 160/329 (48%), Gaps = 54/329 (16%)

Query: 19  NKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV 78
           N  +  L K+G + +A ++F +M Q++ +++N+M+  YA+   ++ A +LFE+MP+RN V
Sbjct: 189 NSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTV 248

Query: 79  SWNSMIAGYLHNDKVKEARELFDKMFRP--DLFSWALMITCYTRKGELEKARELFDLLPN 136
           SW++M+ GY     ++ AR +FDKM  P  ++ +W ++I  Y  KG L++A  L D +  
Sbjct: 249 SWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVA 308

Query: 137 ---KEDTAC-----------------------------------WNAMVAGYAKIGNYNE 158
              K D A                                     NA++  YAK GN  +
Sbjct: 309 SGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKK 368

Query: 159 AKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEER----DVVSWNLML----- 209
           A  + + +P K++VSWN+ML G   +G    A + F  M       D V++  +L     
Sbjct: 369 AFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNH 428

Query: 210 DGYVE--LDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVA 266
            G ++  +D   S  K +  +P+  V  +  ++    R GR+ EA ++   MP+  NVV 
Sbjct: 429 AGLIDEGIDYFYSMEKVYDLVPQ--VEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVI 486

Query: 267 WNAMIAAYVQRGQIEEAARLFIEMPERNP 295
           W A++ A     +++ A  +   + + +P
Sbjct: 487 WGALLGACRMHNEVDIAKEVLDNLVKLDP 515



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 131/277 (47%), Gaps = 17/277 (6%)

Query: 364 IKGYAQCGRMDEAINLFRQMVNK----DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRN 419
           ++   +C  +++   L  Q++ +    D+     +I+  +  RQ + AV++F ++ +  N
Sbjct: 23  LQDLPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQV-QEPN 81

Query: 420 TVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHH 479
               N+LI    QN     A  +F  M + G  AD+ T    L AC+  + L + + +H+
Sbjct: 82  VHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHN 141

Query: 480 LAIKSGYVNDLFVGNSLITMYAKCG--RIQNAELLFKDADPVDVISWNSLIAGYAINGNA 537
              K G  +D++V N+LI  Y++CG   +++A  LF+     D +SWNS++ G    G  
Sbjct: 142 HIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGEL 201

Query: 538 TEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYAC 597
            +A +LF+EM       D +++  +L   +    +    +LFE M E   +      ++ 
Sbjct: 202 RDARRLFDEMPQR----DLISWNTMLDGYARCREMSKAFELFEKMPERNTVS-----WST 252

Query: 598 MIDLLSRAGRLDEAFEMVKGMKIKP-NAGIWGTLLGA 633
           M+   S+AG ++ A  M   M +   N   W  ++  
Sbjct: 253 MVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAG 289



 Score = 55.8 bits (133), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/197 (20%), Positives = 87/197 (44%), Gaps = 32/197 (16%)

Query: 10  NKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLF 69
           N GS  +  N  +    K G +++A  +F+ + +K+ V++N+M+     +G   +A +LF
Sbjct: 345 NLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELF 404

Query: 70  EQMPQRNL----VSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELE 125
            +M +  +    V++ +++    H   + E  + F  M                      
Sbjct: 405 SRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSM---------------------- 442

Query: 126 KARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKN 184
              +++DL+P  E   C   +V    ++G   EA K++  MP   N+V W ++L     +
Sbjct: 443 --EKVYDLVPQVEHYGC---LVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMH 497

Query: 185 GEMHLASKFFEAMEERD 201
            E+ +A +  + + + D
Sbjct: 498 NEVDIAKEVLDNLVKLD 514


>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Glycine max]
          Length = 529

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 168/487 (34%), Positives = 273/487 (56%), Gaps = 26/487 (5%)

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERN--PVSWTTMIDGYVRIAKLDEARRLLDQ 320
           NV+ +NA+I   V     E+A   ++ M   N  P S++         + L +A  LL  
Sbjct: 40  NVLVFNALIRGCVHCCYSEQALVHYMHMLRNNVMPTSYS--------FSSLIKACTLLVD 91

Query: 321 MPY--------------KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG 366
             +               ++  QT +I  Y     +  + ++FD +   DV  W  MI  
Sbjct: 92  SAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDVGGSRRVFDDMPERDVFAWTTMISA 151

Query: 367 YAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNAL 426
           + + G M  A  LF +M  K++ TWN MI GY ++   + A  +F +M   R+ +SW  +
Sbjct: 152 HVRDGDMASAGRLFDEMPEKNVATWNAMIDGYGKLGNAESAEFLFNQM-PARDIISWTTM 210

Query: 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY 486
           ++ + +N+ + + + +F  +  +G   D  T+   +SACAHL AL LG+++H   +  G+
Sbjct: 211 MNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVISACAHLGALALGKEVHLYLVLQGF 270

Query: 487 VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEE 546
             D+++G+SLI MYAKCG I  A L+F      ++  WN +I G A +G   EA+++F E
Sbjct: 271 DLDVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRMFGE 330

Query: 547 MVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAG 606
           M  + + P+ VTFI +L+AC+H G ++ G + F  M + Y I P VEHY CM+DLLS+AG
Sbjct: 331 MERKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCIAPQVEHYGCMVDLLSKAG 390

Query: 607 RLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSN 666
            L++A EM++ M ++PN+ IWG LL  C++H+N+++  IAV+ L  LEP  +  Y+LL N
Sbjct: 391 LLEDALEMIRNMTVEPNSFIWGALLNGCKLHKNLEIAHIAVQNLMVLEPSNSGHYSLLVN 450

Query: 667 MHAEAGRWDEVEKVRVSMEGSGAQKQ-PGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLK 725
           M+AE  RW+EV K+R +M+  G +K+ PG SW+E+   +H F + D      +++   L 
Sbjct: 451 MYAEENRWNEVAKIRTTMKDLGVEKRCPGSSWVEINKTVHLFAASDTYHPSYSQLHLLLA 510

Query: 726 TLAAQIR 732
            L  Q+R
Sbjct: 511 ELDDQLR 517



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 137/255 (53%), Gaps = 9/255 (3%)

Query: 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIE 289
           + +V    T++  Y+  G +  +RR+FD MP R+V AW  MI+A+V+ G +  A RLF E
Sbjct: 108 DSHVFVQTTLIEFYSTFGDVGGSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDE 167

Query: 290 MPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF 349
           MPE+N  +W  MIDGY ++   + A  L +QMP ++I + T M++ Y +NKR  E   +F
Sbjct: 168 MPEKNVATWNAMIDGYGKLGNAESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIALF 227

Query: 350 ----DKIGTHDVVCWNVMIKGYAQCGRM----DEAINLFRQMVNKDIVTWNTMIAGYAQI 401
               DK    D V    +I   A  G +    +  + L  Q  + D+   +++I  YA+ 
Sbjct: 228 HDVIDKGMIPDEVTMTTVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKC 287

Query: 402 RQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461
             +D A+ +F ++ + +N   WN +I G   + +  +AL++F  M ++  + +  T    
Sbjct: 288 GSIDMALLVFYKL-QTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTFISI 346

Query: 462 LSACAHLAALQLGRQ 476
           L+AC H   ++ GR+
Sbjct: 347 LTACTHAGFIEEGRR 361



 Score =  135 bits (340), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 99/447 (22%), Positives = 209/447 (46%), Gaps = 35/447 (7%)

Query: 42  SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFD 101
           + ++    N  ISA +    +N A   F  +   N++ +N++I G +H    ++A   + 
Sbjct: 6   TTQDCFLVNQFISACSNLSCINLAASAFANVQNPNVLVFNALIRGCVHCCYSEQALVHYM 65

Query: 102 KMFRPDLFSWALMITCYTRKGELEKARELFD----------LLPNKEDTACW--NAMVAG 149
            M R ++     M T Y+    ++    L D          +  +  D+  +    ++  
Sbjct: 66  HMLRNNV-----MPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEF 120

Query: 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLML 209
           Y+  G+   ++++ D MP +++ +W +M+S + ++G+M  A + F+ M E++V +WN M+
Sbjct: 121 YSTFGDVGGSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDEMPEKNVATWNAMI 180

Query: 210 DGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLF----DQMPIRNVV 265
           DGY +L + +SA   F ++P ++++SW TM++ Y+RN R  E   LF    D+  I + V
Sbjct: 181 DGYGKLGNAESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEV 240

Query: 266 AWNAMIAAYVQRGQI----EEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQM 321
               +I+A    G +    E    L ++  + +    +++ID Y +   +D A  +  ++
Sbjct: 241 TMTTVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFYKL 300

Query: 322 PYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDV----VCWNVMIKGYAQCGRMDEAI 377
             KN+     +I G   +  ++EA ++F ++    +    V +  ++      G ++E  
Sbjct: 301 QTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGR 360

Query: 378 NLFRQMVNKDIVT-----WNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGF-L 431
             F  MV    +      +  M+   ++   ++DA+++   M    N+  W AL++G  L
Sbjct: 361 RWFMSMVQDYCIAPQVEHYGCMVDLLSKAGLLEDALEMIRNMTVEPNSFIWGALLNGCKL 420

Query: 432 QNEFHLDALKIFVLMTQEGKKADHSTL 458
                +  + +  LM  E   + H +L
Sbjct: 421 HKNLEIAHIAVQNLMVLEPSNSGHYSL 447



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 170/357 (47%), Gaps = 22/357 (6%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S+VF Q   I      G V  + ++F  M +++   + +MISA+ ++G +  A +LF++M
Sbjct: 109 SHVFVQTTLIEFYSTFGDVGGSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLFDEM 168

Query: 73  PQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD 132
           P++N+ +WN+MI GY      + A  LF++M   D+ SW  M+ CY+R    ++   LF 
Sbjct: 169 PEKNVATWNAMIDGYGKLGNAESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIALFH 228

Query: 133 LLPNK---EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK----NIVSWNSMLSGYTKNG 185
            + +K    D      +++  A +G     K++   +  +    ++   +S++  Y K G
Sbjct: 229 DVIDKGMIPDEVTMTTVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCG 288

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQ----NVVSWVTMLS 241
            + +A   F  ++ +++  WN ++DG      ++ A + F ++  +    N V+++++L+
Sbjct: 289 SIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTFISILT 348

Query: 242 GYARNGRMLEARRLFDQMPIRNVVA-----WNAMIAAYVQRGQIEEAARLFIEMP-ERNP 295
                G + E RR F  M     +A     +  M+    + G +E+A  +   M  E N 
Sbjct: 349 ACTHAGFIEEGRRWFMSMVQDYCIAPQVEHYGCMVDLLSKAGLLEDALEMIRNMTVEPNS 408

Query: 296 VSWTTMIDGYVRIAKLDEA----RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQI 348
             W  +++G      L+ A    + L+   P  N    + +++ Y +  R +E  +I
Sbjct: 409 FIWGALLNGCKLHKNLEIAHIAVQNLMVLEP-SNSGHYSLLVNMYAEENRWNEVAKI 464


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 199/660 (30%), Positives = 324/660 (49%), Gaps = 67/660 (10%)

Query: 134 LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKF 193
             N       N +   Y+K  + + A +L D M  +N  SW  +++G  +NG      +F
Sbjct: 99  FSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEF 158

Query: 194 FEAMEERDVVSWNLMLDGY---------VELDDLDSAWKFFQKIPEQNVVSWVTMLSGYA 244
           F  M+ + +        G          +EL ++  A    +       VS   +L+ YA
Sbjct: 159 FCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVS-TALLNMYA 217

Query: 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM-PERNPVSWTTMID 303
           +   + ++ ++F+ M   NVV+WNAMI  +       +A  LF+ M  E       T I 
Sbjct: 218 KLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIG 277

Query: 304 GYVRIAKLDEARRLLDQMPY-------KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHD 356
               I  L +  +  +   Y        N    TA+I    +   + EA  IF+   +H 
Sbjct: 278 VAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFN---SHF 334

Query: 357 VVC-----WNVMIKGYAQCGRMDEAINLFRQMVNKDIV--------TWNTMIA------- 396
           + C     WN MI GY + G  ++A+ LF +M   DI          +N + A       
Sbjct: 335 ITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLG 394

Query: 397 -------------------------GYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFL 431
                                     YA+   ++D  K+F  M + R+ +SW +L++ + 
Sbjct: 395 KKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRM-EDRDLISWTSLVTAYS 453

Query: 432 QNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLF 491
           Q      A++IF  M  EG   +  T +  L +CA+L  L+ G+Q+H +  K G   D  
Sbjct: 454 QCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKC 513

Query: 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG 551
           + ++L+ MYAKCG + +A+ +F      D +SW ++IAG+A +G   +A++LF  MV  G
Sbjct: 514 IESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLG 573

Query: 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611
           V P+ VTF+ VL ACSH GLV+ GL+ F+ M + Y + P +EHYAC++DLLSR G L++A
Sbjct: 574 VEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDA 633

Query: 612 FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEA 671
            E +  M ++PN  +W TLLGACR+H N++LG +A +K+   + + ++ Y LLSN + E+
Sbjct: 634 MEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIES 693

Query: 672 GRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731
           G + +   +R  M+  G +K+PGCSWI V   +H F +GD +     +I   L+ L  ++
Sbjct: 694 GSYKDGLSLRHLMKEQGVKKEPGCSWISVNGTLHKFYAGDQQHPEKDKIYAKLEELKLKL 753



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 139/611 (22%), Positives = 267/611 (43%), Gaps = 71/611 (11%)

Query: 42  SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFD 101
           +  + V  N +  AY+K   ++ A +LF+QM QRN  SW  +IAG   N    +  E F 
Sbjct: 101 NHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFC 160

Query: 102 KM----FRPDLFSWALMITCYTRKGELEKARELFDLLPNK---EDTACWNAMVAGYAKIG 154
           +M      PD F+++ ++        +E    +   +  +     T    A++  YAK+ 
Sbjct: 161 EMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQ 220

Query: 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE 214
              ++ K+ + M   N+VSWN+M++G+T N     A   F  M    V        G  +
Sbjct: 221 EIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAK 280

Query: 215 ----LDDLDSAWKF----FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI--RNV 264
               L D++ A +      +   + N +    ++   ++ G + EAR +F+   I  R  
Sbjct: 281 AIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFN 340

Query: 265 VAWNAMIAAYVQRGQIEEAARLFIEMPER----NPVSWTTMIDGY-----VRIAKLDEAR 315
             WNAMI+ Y++ G  E+A  LF +M +     +  ++ ++ +       + + K   AR
Sbjct: 341 APWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHAR 400

Query: 316 RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375
            +   +    ++   A+ + Y +   +++  ++F+++   D++ W  ++  Y+QC   D+
Sbjct: 401 AIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDK 460

Query: 376 AINLFRQM---------------------------------------VNKDIVTWNTMIA 396
           AI +F  M                                       ++ D    + ++ 
Sbjct: 461 AIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVD 520

Query: 397 GYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHS 456
            YA+   + DA K+F  +    +TVSW A+I+G  Q+    DAL++F  M Q G + +  
Sbjct: 521 MYAKCGCLGDAKKVFNRI-SNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAV 579

Query: 457 TLACALSACAHLAALQLGRQIHHLAIKS-GYVNDLFVGNSLITMYAKCGRIQNAELLFKD 515
           T  C L AC+H   ++ G Q   L  K+ G V ++     ++ + ++ G + +A + F  
Sbjct: 580 TFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDA-MEFIS 638

Query: 516 ADPVDV--ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVD 573
             PV+   + W +L+    ++GN  E  +L  + ++   A +  T++ + +     G   
Sbjct: 639 RMPVEPNEMVWQTLLGACRVHGN-VELGELAAQKILSFKAENSATYVLLSNTYIESGSYK 697

Query: 574 GGLKLFECMTE 584
            GL L   M E
Sbjct: 698 DGLSLRHLMKE 708



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 111/518 (21%), Positives = 219/518 (42%), Gaps = 83/518 (16%)

Query: 13  SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQM 72
           S+ F     +    K   +E++ K+F+ M++ N V++N+MI+ +  N    DA  LF +M
Sbjct: 204 SHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRM 263

Query: 73  PQRNL----------------------------------VSWNSMIAGYL--HNDK---V 93
               +                                  V  N+++   L   N K   +
Sbjct: 264 MGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSL 323

Query: 94  KEARELFDKMFRPDLFS--WALMITCYTRKGELEKARELF------DL-LPNKEDTACWN 144
           +EAR +F+  F    F+  W  MI+ Y R G  EKA ELF      D+ L +    + +N
Sbjct: 324 QEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFN 383

Query: 145 AMVA-GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV 203
           A+ A     +G    A+ +   +    +   N++ + Y K G +    K F  ME+RD++
Sbjct: 384 AIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLI 443

Query: 204 SWNLMLDGYVELDDLDSAWKFFQKI------PEQNVVSWVTM------LSGYARNGRMLE 251
           SW  ++  Y +  + D A + F  +      P Q   S V +      L  Y +    + 
Sbjct: 444 SWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGII 503

Query: 252 ARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKL 311
            +   D     +    +A++  Y + G + +A ++F  +   + VSWT +I G+ +   +
Sbjct: 504 CKVGLDM----DKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIV 559

Query: 312 DEARRLLDQMPY----KNIAAQTAMISGYVQNKRMDEANQIFDKI-GTHDVVC----WNV 362
           D+A +L  +M       N      ++        ++E  Q F  +  T+ +V     +  
Sbjct: 560 DDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYAC 619

Query: 363 MIKGYAQCGRMDEAINLFRQM-VNKDIVTWNTMIA-----GYAQIRQMDDAVKIFEEMGK 416
           ++   ++ G +++A+    +M V  + + W T++      G  ++ ++  A KI     K
Sbjct: 620 IVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGEL-AAQKILS--FK 676

Query: 417 RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454
             N+ ++  L + ++++  + D L +  LM ++G K +
Sbjct: 677 AENSATYVLLSNTYIESGSYKDGLSLRHLMKEQGVKKE 714



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 73/372 (19%), Positives = 158/372 (42%), Gaps = 58/372 (15%)

Query: 9   GNKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKL 68
           G + +YV   N       K G +E+  K+F++M  ++ +++ S+++AY++    + A ++
Sbjct: 405 GLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEI 464

Query: 69  FEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKAR 128
           F  M    +                            P+ F+++ ++        LE  +
Sbjct: 465 FSNMRAEGIA---------------------------PNQFTFSSVLVSCANLCLLEYGQ 497

Query: 129 ELFDLLPN---KEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNG 185
           ++  ++       D    +A+V  YAK G   +AKK+ + + + + VSW ++++G+ ++G
Sbjct: 498 QVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHG 557

Query: 186 EMHLASKFFEAM----EERDVVSWNLML-----DGYVE--LDDLDSAWKFFQKIPE-QNV 233
            +  A + F  M     E + V++  +L      G VE  L       K +  +PE ++ 
Sbjct: 558 IVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHY 617

Query: 234 VSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQRGQI---EEAARLFIE 289
              V +LS   R G + +A     +MP+  N + W  ++ A    G +   E AA+  + 
Sbjct: 618 ACIVDLLS---RVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHGNVELGELAAQKILS 674

Query: 290 MPERNPVSWTTMIDGYVRIAKLDEA---RRLLDQMPYKN------IAAQTAMISGYVQNK 340
               N  ++  + + Y+      +    R L+ +   K       I+    +   Y  ++
Sbjct: 675 FKAENSATYVLLSNTYIESGSYKDGLSLRHLMKEQGVKKEPGCSWISVNGTLHKFYAGDQ 734

Query: 341 RMDEANQIFDKI 352
           +  E ++I+ K+
Sbjct: 735 QHPEKDKIYAKL 746



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 4/112 (3%)

Query: 462 LSACAHLAALQLGRQIHHLAIKSGYVN--DLFVGNSLITMYAKCGRIQNAELLFKDADPV 519
           L  C     L+  + +H   +KS + N   L + N +   Y+KC  I  A  LF      
Sbjct: 75  LRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQR 134

Query: 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571
           +  SW  LIAG A NG   +  + F EM  +G+ PD   + G+L  C  +GL
Sbjct: 135 NTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQIC--IGL 184


>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Brachypodium distachyon]
          Length = 617

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 173/485 (35%), Positives = 268/485 (55%), Gaps = 44/485 (9%)

Query: 239 MLSGYARNGR--------MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290
           +L+GYAR  R        + +AR LFD++P  + V++N +++ +   G +  A  LF  M
Sbjct: 49  LLAGYARAARPGGRRDRLLADARHLFDRIPRPDAVSYNTLLSCHFAAGDVRGARDLFAAM 108

Query: 291 PE--RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQI 348
           P   RN  SW TM                               +SG  ++  + EA  +
Sbjct: 109 PATARNVTSWNTM-------------------------------LSGLSRSGAVGEARAV 137

Query: 349 FDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD-IVTWNTMIAGYAQIRQMDDA 407
           F  +   + + WN M+  +A  G M  A   F    +K+  V W  M++GY     ++ A
Sbjct: 138 FLAMPARNSISWNAMVSCFAHAGDMCAAEECFEDAPDKENAVLWTAMVSGYMDSGHVEKA 197

Query: 408 VKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK-KADHSTLACALSACA 466
           ++ FE M   R+ VSWNA+++G+++N    DAL +F  M ++   + + STL+  L  C+
Sbjct: 198 MQFFEAM-PVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNESTLSSVLLGCS 256

Query: 467 HLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNS 526
           +L+AL  GRQ+H    K      +  G SL++MY KCG +  A  LF +    DVI+WN+
Sbjct: 257 NLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNA 316

Query: 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVY 586
           +I+GYA +G+  EAI+LFE+M  +GV P+ +TF+ VL+AC H G+ D G++ FE M EVY
Sbjct: 317 MISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDFGMQCFERMQEVY 376

Query: 587 AIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIA 646
            IE  V+HY+CM+DLL RAG L+ A  +++ M  +P+   +GTLL A R+++N++    A
Sbjct: 377 GIEARVDHYSCMVDLLCRAGSLERAVSLIRSMPFQPHPSAYGTLLNASRVYKNMEFAEFA 436

Query: 647 VEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHT 706
             KL E  PQ    Y  L+N++A A +W +V +VR  M+ +   K PG SW+E+   IH 
Sbjct: 437 AGKLIEQNPQNAGAYVQLANIYAVANQWADVSRVRRWMKDNAVVKTPGYSWVEINGVIHV 496

Query: 707 FLSGD 711
           F S D
Sbjct: 497 FRSND 501



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 165/306 (53%), Gaps = 15/306 (4%)

Query: 31  VEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ--RNLVSWNSMIAGYL 88
           + +A  +F ++ + + V+YN+++S +   G V  AR LF  MP   RN+ SWN+M++G  
Sbjct: 67  LADARHLFDRIPRPDAVSYNTLLSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSGLS 126

Query: 89  HNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVA 148
            +  V EAR +F  M   +  SW  M++C+   G++  A E F+  P+KE+   W AMV+
Sbjct: 127 RSGAVGEARAVFLAMPARNSISWNAMVSCFAHAGDMCAAEECFEDAPDKENAVLWTAMVS 186

Query: 149 GYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM-EERDV----V 203
           GY   G+  +A +  +AMP +++VSWN++++GY KN     A   F+ M  + DV     
Sbjct: 187 GYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNES 246

Query: 204 SWNLMLDGYVELDDLDSAWKFFQ---KIP-EQNVVSWVTMLSGYARNGRMLEARRLFDQM 259
           + + +L G   L  L    +  Q   K+P  + V +  +++S Y + G +  A +LF +M
Sbjct: 247 TLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEM 306

Query: 260 PIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEAR 315
            IR+V+AWNAMI+ Y   G   EA  LF +M     E N +++  ++   +     D   
Sbjct: 307 RIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDFGM 366

Query: 316 RLLDQM 321
           +  ++M
Sbjct: 367 QCFERM 372



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 190/370 (51%), Gaps = 30/370 (8%)

Query: 43  QKNTVTYNSMISAYAKNGR--------VNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVK 94
           +K T  YN +++ YA+  R        + DAR LF+++P+ + VS+N++++ +     V+
Sbjct: 40  RKTTADYNRLLAGYARAARPGGRRDRLLADARHLFDRIPRPDAVSYNTLLSCHFAAGDVR 99

Query: 95  EARELFDKMFRP--DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAK 152
            AR+LF  M     ++ SW  M++  +R G + +AR +F  +P +   + WNAMV+ +A 
Sbjct: 100 GARDLFAAMPATARNVTSWNTMLSGLSRSGAVGEARAVFLAMPARNSIS-WNAMVSCFAH 158

Query: 153 IGNYNEAKKLLDAMPSK-NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211
            G+   A++  +  P K N V W +M+SGY  +G +  A +FFEAM  R +VSWN ++ G
Sbjct: 159 AGDMCAAEECFEDAPDKENAVLWTAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAG 218

Query: 212 YVELDDLDSAWKFFQKI-------PEQNVVSWVTM-LSGYARNGRMLEARRLFDQMPI-R 262
           YV+    + A   F+ +       P ++ +S V +  S  +  G   +  +   ++P+ R
Sbjct: 219 YVKNSRAEDALWVFKTMVRDADVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSR 278

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMP 322
            V A  ++++ Y + G ++ A +LF EM  R+ ++W  MI GY       EA  L ++M 
Sbjct: 279 RVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMK 338

Query: 323 YKNIAAQ----TAMISGYVQNKRMDEANQIFDKIG-----THDVVCWNVMIKGYAQCGRM 373
            + +        A+++  +     D   Q F+++         V  ++ M+    + G +
Sbjct: 339 SQGVEPNWITFVAVLTACIHTGMCDFGMQCFERMQEVYGIEARVDHYSCMVDLLCRAGSL 398

Query: 374 DEAINLFRQM 383
           + A++L R M
Sbjct: 399 ERAVSLIRSM 408



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/359 (27%), Positives = 177/359 (49%), Gaps = 58/359 (16%)

Query: 114 MITCYTRKGELEKARE---LFDLLPNKEDTACWNAMVAGYAK------------------ 152
           + T   R+G+L  A E   +    P ++ TA +N ++AGYA+                  
Sbjct: 14  LATAAIRRGDLAGAAEPEAVASTTPQRKTTADYNRLLAGYARAARPGGRRDRLLADARHL 73

Query: 153 ---------------------IGNYNEAKKLLDAMP--SKNIVSWNSMLSGYTKNGEMHL 189
                                 G+   A+ L  AMP  ++N+ SWN+MLSG +++G +  
Sbjct: 74  FDRIPRPDAVSYNTLLSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSGLSRSGAVGE 133

Query: 190 ASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPE-QNVVSWVTMLSGYARNGR 248
           A   F AM  R+ +SWN M+  +    D+ +A + F+  P+ +N V W  M+SGY  +G 
Sbjct: 134 ARAVFLAMPARNSISWNAMVSCFAHAGDMCAAEECFEDAPDKENAVLWTAMVSGYMDSGH 193

Query: 249 MLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEM-----PERNPVSWTTMID 303
           + +A + F+ MP+R++V+WNA++A YV+  + E+A  +F  M        N  + ++++ 
Sbjct: 194 VEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNESTLSSVLL 253

Query: 304 GYVRIAKLDEARRL---LDQMPY-KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC 359
           G   ++ L   R++     ++P  + + A T+++S Y +   +D A ++F ++   DV+ 
Sbjct: 254 GCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIA 313

Query: 360 WNVMIKGYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
           WN MI GYA  G   EAI LF +M    V  + +T+  ++         D  ++ FE M
Sbjct: 314 WNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDFGMQCFERM 372



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 165/332 (49%), Gaps = 25/332 (7%)

Query: 15  VFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ 74
           V + N  ++ L +SG V EA  +F  M  +N++++N+M+S +A  G +  A + FE  P 
Sbjct: 115 VTSWNTMLSGLSRSGAVGEARAVFLAMPARNSISWNAMVSCFAHAGDMCAAEECFEDAPD 174

Query: 75  R-NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELF-- 131
           + N V W +M++GY+ +  V++A + F+ M    L SW  ++  Y +    E A  +F  
Sbjct: 175 KENAVLWTAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKT 234

Query: 132 -----DLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNG 185
                D+ PN+   +      +  + +G   +  +    +P S+ + +  S++S Y K G
Sbjct: 235 MVRDADVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCG 294

Query: 186 EMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNV----VSWVTMLS 241
           ++  A K F  M  RDV++WN M+ GY    D   A + F+K+  Q V    +++V +L+
Sbjct: 295 DLDGACKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLT 354

Query: 242 GYARNGRMLEARRLFDQM-PIRNVVA----WNAMIAAYVQRGQIEEAARLFIEMP-ERNP 295
                G      + F++M  +  + A    ++ M+    + G +E A  L   MP + +P
Sbjct: 355 ACIHTGMCDFGMQCFERMQEVYGIEARVDHYSCMVDLLCRAGSLERAVSLIRSMPFQPHP 414

Query: 296 VSWTTMIDGYVRIAKLDE-----ARRLLDQMP 322
            ++ T+++   R+ K  E     A +L++Q P
Sbjct: 415 SAYGTLLNA-SRVYKNMEFAEFAAGKLIEQNP 445


>gi|302799473|ref|XP_002981495.1| hypothetical protein SELMODRAFT_114873 [Selaginella moellendorffii]
 gi|300150661|gb|EFJ17310.1| hypothetical protein SELMODRAFT_114873 [Selaginella moellendorffii]
          Length = 605

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 177/577 (30%), Positives = 306/577 (53%), Gaps = 48/577 (8%)

Query: 122 GELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGY 181
           GEL++   L    P+  +T   N +V  Y K  + ++A+ + +++P  N  SW  ++S +
Sbjct: 34  GELKRIHNLITQTPHSHNTFLLNLLVRMYGKCASLDDARLVFESIPEPNEFSWTIIVSAF 93

Query: 182 TKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLS 241
            +NG++  A ++F+    + +V++N+M+ GY    ++  A   + ++   N V+W  ML 
Sbjct: 94  AQNGQLSSAKEYFDKAPIKTLVTYNVMITGYGHQKNVHQAQDIYGRMSSWNAVTWNVMLQ 153

Query: 242 GYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTM 301
            +A+N  +  AR LFDQM +R+ VAW  +I AY+  G +E A+ +  +MP  + V  T M
Sbjct: 154 TFAQNRHLRNARNLFDQMRVRDEVAWTTLICAYLVNGNLEWASSMLEKMPAHDVVVSTAM 213

Query: 302 IDGYVRIAKLDEARRLLDQMPY-----------------------------KNIAAQTAM 332
           +    +  ++DEA+ L DQMP                              +++ +   +
Sbjct: 214 VSANAQAGQIDEAKYLFDQMPIHSTESWNALMNTGLSSAELCKSLFDENPARDVFSWNTL 273

Query: 333 ISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWN 392
           IS + Q     EA QIF+++   + V +N++I   A+ G + +A  +F +M  KD V+WN
Sbjct: 274 ISVHAQTGDYQEAVQIFNRMPVRNTVSYNLVIAANAEAGNLWQAWRIFDEMPCKDSVSWN 333

Query: 393 TMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKK 452
           ++I GYAQ+  +DDA  +F+ M  +++ VSW+ +I+ + Q+    +A+ +F  M  E  +
Sbjct: 334 SLIQGYAQLGYVDDARVMFDTMMPKKDVVSWSCIIAAYAQSGHCREAINLFQRMDVEPNE 393

Query: 453 ADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512
                +   L+AC+    L LG+ IH   +       +FVG +L+ MYAKCG I+ A  +
Sbjct: 394 M---VIVSTLAACSGAKDLALGKAIHARILSPDLRKSVFVGTALLNMYAKCGAIKQARAV 450

Query: 513 F-----KDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567
           F     KD    D ++W+SL+AGYA + +A +AI L+ +M +EG+ PD VT++ +L++CS
Sbjct: 451 FDRMPHKDVVARDTVTWSSLVAGYAHHSHA-DAILLYRDMHLEGIQPDSVTYVSILNSCS 509

Query: 568 HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIW 627
           H  L+      F  M E        +H  CM+D+L RAG +  A ++V+ M  +P+   W
Sbjct: 510 HASLLAQARHFFVSMVE--------DH--CMVDVLGRAGFVGRAEDVVRNMPFQPDVVAW 559

Query: 628 GTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALL 664
            TLLG C++H +   G +A      + P       LL
Sbjct: 560 NTLLGCCKVHGDAWRGAVAAWNAVGISPGFAGSTVLL 596



 Score =  246 bits (627), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 142/535 (26%), Positives = 285/535 (53%), Gaps = 28/535 (5%)

Query: 16  FNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR 75
           F  N  +   GK   +++A  +F  + + N  ++  ++SA+A+NG+++ A++ F++ P +
Sbjct: 53  FLLNLLVRMYGKCASLDDARLVFESIPEPNEFSWTIIVSAFAQNGQLSSAKEYFDKAPIK 112

Query: 76  NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLP 135
            LV++N MI GY H   V +A++++ +M   +  +W +M+  + +   L  AR LFD + 
Sbjct: 113 TLVTYNVMITGYGHQKNVHQAQDIYGRMSSWNAVTWNVMLQTFAQNRHLRNARNLFDQMR 172

Query: 136 NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFE 195
            +++ A W  ++  Y   GN   A  +L+ MP+ ++V   +M+S   + G++  A   F+
Sbjct: 173 VRDEVA-WTTLICAYLVNGNLEWASSMLEKMPAHDVVVSTAMVSANAQAGQIDEAKYLFD 231

Query: 196 AMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRL 255
            M      SWN +++  +   +L  +   F + P ++V SW T++S +A+ G   EA ++
Sbjct: 232 QMPIHSTESWNALMNTGLSSAELCKS--LFDENPARDVFSWNTLISVHAQTGDYQEAVQI 289

Query: 256 FDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEAR 315
           F++MP+RN V++N +IAA  + G + +A R+F EMP ++ VSW ++I GY ++  +D+AR
Sbjct: 290 FNRMPVRNTVSYNLVIAANAEAGNLWQAWRIFDEMPCKDSVSWNSLIQGYAQLGYVDDAR 349

Query: 316 RLLDQ-MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQC-GRM 373
            + D  MP K++ + + +I+ Y Q+    EA  +F ++         V++   A C G  
Sbjct: 350 VMFDTMMPKKDVVSWSCIIAAYAQSGHCREAINLFQRMDVEPNEM--VIVSTLAACSGAK 407

Query: 374 DEAIN------LFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR----RNTVSW 423
           D A+       +    + K +     ++  YA+   +  A  +F+ M  +    R+TV+W
Sbjct: 408 DLALGKAIHARILSPDLRKSVFVGTALLNMYAKCGAIKQARAVFDRMPHKDVVARDTVTW 467

Query: 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIK 483
           ++L++G+  +  H DA+ ++  M  EG + D  T    L++C+H + L   R        
Sbjct: 468 SSLVAGYAHHS-HADAILLYRDMHLEGIQPDSVTYVSILNSCSHASLLAQARH------- 519

Query: 484 SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD-PVDVISWNSLIAGYAINGNA 537
             +   +   + ++ +  + G +  AE + ++     DV++WN+L+    ++G+A
Sbjct: 520 --FFVSMVEDHCMVDVLGRAGFVGRAEDVVRNMPFQPDVVAWNTLLGCCKVHGDA 572



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 150/313 (47%), Gaps = 62/313 (19%)

Query: 10  NKGSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLF 69
           N    VF+ N  I+   ++G  +EA++IF++M  +NTV+YN +I+A A+ G +  A ++F
Sbjct: 262 NPARDVFSWNTLISVHAQTGDYQEAVQIFNRMPVRNTVSYNLVIAANAEAGNLWQAWRIF 321

Query: 70  EQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMF-RPDLFSWALMITCYTRKGELEKAR 128
           ++MP ++ VSWNS+I GY     V +AR +FD M  + D+ SW+ +I  Y + G   +A 
Sbjct: 322 DEMPCKDSVSWNSLIQGYAQLGYVDDARVMFDTMMPKKDVVSWSCIIAAYAQSGHCREAI 381

Query: 129 ELF---DLLPN--------------------------------KEDTACWNAMVAGYAKI 153
            LF   D+ PN                                ++      A++  YAK 
Sbjct: 382 NLFQRMDVEPNEMVIVSTLAACSGAKDLALGKAIHARILSPDLRKSVFVGTALLNMYAKC 441

Query: 154 GNYNEAKKLLDAMPSKNI-----VSWNSMLSGYTKNG---------EMHLASKFFEAMEE 199
           G   +A+ + D MP K++     V+W+S+++GY  +          +MHL     E ++ 
Sbjct: 442 GAIKQARAVFDRMPHKDVVARDTVTWSSLVAGYAHHSHADAILLYRDMHL-----EGIQP 496

Query: 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQM 259
            D V++  +L+       L  A  FF  + E +      M+    R G +  A  +   M
Sbjct: 497 -DSVTYVSILNSCSHASLLAQARHFFVSMVEDH-----CMVDVLGRAGFVGRAEDVVRNM 550

Query: 260 PIR-NVVAWNAMI 271
           P + +VVAWN ++
Sbjct: 551 PFQPDVVAWNTLL 563



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 114/238 (47%), Gaps = 13/238 (5%)

Query: 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500
           K+     Q  + +   TLA A++ C +   L   ++IH+L  ++ + ++ F+ N L+ MY
Sbjct: 3   KVAAKQAQALRASAQDTLAHAVNLCGNSKDLGELKRIHNLITQTPHSHNTFLLNLLVRMY 62

Query: 501 AKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560
            KC  + +A L+F+     +  SW  +++ +A NG  + A + F++  ++ +    VT+ 
Sbjct: 63  GKCASLDDARLVFESIPEPNEFSWTIIVSAFAQNGQLSSAKEYFDKAPIKTL----VTYN 118

Query: 561 GVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKI 620
            +++   H   V     ++  M+   A+      +  M+   ++   L  A  +   M++
Sbjct: 119 VMITGYGHQKNVHQAQDIYGRMSSWNAVT-----WNVMLQTFAQNRHLRNARNLFDQMRV 173

Query: 621 KPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVE 678
           +     W TL+ A  ++ N++     +EK+   +   ++    + + +A+AG+ DE +
Sbjct: 174 RDEVA-WTTLICAYLVNGNLEWASSMLEKMPAHDVVVSTA---MVSANAQAGQIDEAK 227


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 195/637 (30%), Positives = 324/637 (50%), Gaps = 78/637 (12%)

Query: 162 LLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----------ERDVVSWNLMLDG 211
           + D MP +N VS+ +++ GY +      ++KF EA E          E +   +  +L  
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQ------SNKFIEAFELFARLHGEGHELNPFVFTTVLKL 55

Query: 212 YVELDDLDSAWKFFQKIPE---------QNVVSWVTMLSGYARNGRMLEARRLFDQMPIR 262
            V ++     W    +I            N      ++  Y+ +G +  AR +FD++  +
Sbjct: 56  LVSME-----WAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSK 110

Query: 263 NVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEAR--- 315
           ++V+W  MIA+Y +     EA   F +M     + N  ++  ++   + +   D  +   
Sbjct: 111 DMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVH 170

Query: 316 -RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMD 374
             +L     +++     ++  Y +    D+A + F  +  +DV+ W+ MI  +AQ G+ +
Sbjct: 171 CSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSE 230

Query: 375 EAINLFRQM---------------------------------------VNKDIVTWNTMI 395
           +A+ +F QM                                       ++ D+   N ++
Sbjct: 231 KALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALM 290

Query: 396 AGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADH 455
           A YA+   ++ ++++FE +  R N VSWN +I  ++Q      AL +F  M +   +A  
Sbjct: 291 ACYAKCGCIEQSMELFEALSDR-NDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATE 349

Query: 456 STLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKD 515
            T +  L ACA LAAL+LG Q+H L  K+ Y  D+ VGN+LI MYAKCG I++A  +F  
Sbjct: 350 VTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDM 409

Query: 516 ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575
            D  D +SWN++I GY+++G   EAIK+F  M      PD +TF+GVLSACS+ G +D G
Sbjct: 410 LDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEG 469

Query: 576 LKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACR 635
            + F  M + Y IEP +EHY CM+ L+ R+G LD+A + ++ +  +P+  IW  LLGAC 
Sbjct: 470 KQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACV 529

Query: 636 MHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGC 695
           +H +++LGRI+ +++ ELEP+  + + LLSN++A A RW  V  VR  M+  G +K+PG 
Sbjct: 530 IHNDVELGRISAQRVLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGL 589

Query: 696 SWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIR 732
           SWIE +  +H F   D        I   L+ L  + R
Sbjct: 590 SWIENQGNVHCFTVADTSHADLKLINGMLEFLNMKTR 626



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 131/549 (23%), Positives = 249/549 (45%), Gaps = 70/549 (12%)

Query: 68  LFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM------FRPDLFSWALMITCYTRK 121
           +F++MP+RN VS+ ++I GY  ++K  EA ELF ++        P +F+  L +      
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 122 GELEKARELFDL-LPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG 180
            EL +      L +    +T    A++  Y+  G  + A+++ D + SK++VSW  M++ 
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 181 YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE----LDDLDSA----WKFFQKIPEQN 232
           Y +N     A +FF  M        N    G ++    L + D+         +   E++
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERD 181

Query: 233 VVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE 292
           +   V +L  Y R G   +A R F  MP  +V+ W+ MI+ + Q GQ E+A  +F +M  
Sbjct: 182 LYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRR 241

Query: 293 R----NPVSWTTMIDGYVRIAKLDEARRL----LDQMPYKNIAAQTAMISGYVQNKRMDE 344
                N  ++++++     I  LD ++ +    L      ++    A+++ Y +   +++
Sbjct: 242 AFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQ 301

Query: 345 ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV-------------------- 384
           + ++F+ +   + V WN +I  Y Q G  + A++LF  M+                    
Sbjct: 302 SMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACAT 361

Query: 385 -------------------NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNA 425
                               +D+   N +I  YA+   + DA  +F +M   R+ VSWNA
Sbjct: 362 LAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMF-DMLDLRDKVSWNA 420

Query: 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485
           +I G+  +   ++A+K+F LM +   K D  T    LSAC++   L  G+Q +  ++K  
Sbjct: 421 IICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQ-YFTSMKQD 479

Query: 486 YVNDLFVGN--SLITMYAKCGRIQNAELLFKDA--DPVDVISWNSLIAGYAINGNATEAI 541
           Y  +  + +   ++ +  + G +  A    +D   +P  V+ W +L+    I+ N  E  
Sbjct: 480 YGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEP-SVMIWRALLGACVIH-NDVELG 537

Query: 542 KLFEEMVME 550
           ++  + V+E
Sbjct: 538 RISAQRVLE 546



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 197/397 (49%), Gaps = 27/397 (6%)

Query: 45  NTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKM- 103
           NT    ++I AY+ +G V+ AR++F+++  +++VSW  MIA Y  ND   EA E F +M 
Sbjct: 80  NTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMR 139

Query: 104 ---FRPDLFSWA-LMITCYTRKG-ELEKARELFDLLPNKE-DTACWNAMVAGYAKIGNYN 157
              F+P+ F++A ++  C   +  +  K      L  N E D      ++  Y + G+ +
Sbjct: 140 VAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDND 199

Query: 158 EAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVV----SWNLMLDGYV 213
           +A +    MP  +++ W+ M+S + ++G+   A + F  M    V+    +++ +L    
Sbjct: 200 DAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASA 259

Query: 214 ELDDLDSAWKFFQKIPEQNVVSWV----TMLSGYARNGRMLEARRLFDQMPIRNVVAWNA 269
           +++ LD +        +  + + V     +++ YA+ G + ++  LF+ +  RN V+WN 
Sbjct: 260 DIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNT 319

Query: 270 MIAAYVQRGQIEEAARLFIEM----PERNPVSWTTMIDGYVRIAKLD---EARRLLDQMP 322
           +I +YVQ G  E A  LF  M     +   V++++++     +A L+   +   L  +  
Sbjct: 320 IIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTI 379

Query: 323 Y-KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381
           Y +++A   A+I  Y +   + +A  +FD +   D V WN +I GY+  G   EAI +F 
Sbjct: 380 YGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFN 439

Query: 382 QM----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414
            M       D +T+  +++  +   ++D+  + F  M
Sbjct: 440 LMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSM 476



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 104/453 (22%), Positives = 187/453 (41%), Gaps = 70/453 (15%)

Query: 12  GSYVFNQNKKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQ 71
           GS  F     I     SG V  A ++F ++S K+ V++  MI++YA+N   ++A + F Q
Sbjct: 78  GSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQ 137

Query: 72  MPQRNLVSWNSMIAGYL---------------HNDKVK---------------------- 94
           M        N   AG L               H   +K                      
Sbjct: 138 MRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGD 197

Query: 95  --EARELFDKMFRPDLFSWALMITCYTRKGELEKARELFD------LLPNKEDTACWNAM 146
             +A   F  M + D+  W+ MI+ + + G+ EKA E+F       ++PN+     ++++
Sbjct: 198 NDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQ---FTFSSV 254

Query: 147 VAGYAKIGNYNEAKKL----LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV 202
           +   A I + + +K +    L A  S ++   N++++ Y K G +  + + FEA+ +R+ 
Sbjct: 255 LQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRND 314

Query: 203 VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI- 261
           VSWN ++  YV+L D + A   F  +    V +     S   R    L A  L  Q+   
Sbjct: 315 VSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCL 374

Query: 262 -------RNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314
                  ++V   NA+I  Y + G I++A  +F  +  R+ VSW  +I GY       EA
Sbjct: 375 TAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEA 434

Query: 315 RRLLDQMPYKNIAAQ----TAMISGYVQNKRMDEANQIFDKIGTHDVV--C---WNVMIK 365
            ++ + M              ++S      R+DE  Q F  +     +  C   +  M+ 
Sbjct: 435 IKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVW 494

Query: 366 GYAQCGRMDEAINLFRQM-VNKDIVTWNTMIAG 397
              + G +D+A+     +     ++ W  ++  
Sbjct: 495 LMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGA 527


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.321    0.133    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,315,956,131
Number of Sequences: 23463169
Number of extensions: 460296695
Number of successful extensions: 1565517
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8829
Number of HSP's successfully gapped in prelim test: 3961
Number of HSP's that attempted gapping in prelim test: 1114946
Number of HSP's gapped (non-prelim): 98846
length of query: 740
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 590
effective length of database: 8,839,720,017
effective search space: 5215434810030
effective search space used: 5215434810030
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 81 (35.8 bits)