Query 004644
Match_columns 740
No_of_seqs 639 out of 4135
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 02:46:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004644.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004644hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 7.2E-97 2E-101 829.9 70.5 693 13-735 49-768 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1.2E-76 2.7E-81 650.0 55.3 508 169-735 85-605 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 5.9E-70 1.3E-74 612.2 58.4 605 11-651 82-718 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.2E-58 2.5E-63 508.1 53.0 513 44-625 368-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 2.2E-57 4.8E-62 498.0 52.7 493 169-692 368-914 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 4E-56 8.7E-61 488.1 45.2 455 75-591 85-562 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.5E-42 5.3E-47 400.4 65.7 672 11-689 155-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.8E-42 6E-47 399.9 65.5 670 12-688 122-833 (899)
9 PRK11447 cellulose synthase su 100.0 5.7E-30 1.2E-34 295.2 55.4 615 15-685 28-738 (1157)
10 PRK11447 cellulose synthase su 100.0 1E-27 2.2E-32 276.5 52.2 599 49-690 31-703 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 1.6E-26 3.4E-31 253.5 56.0 614 55-689 53-742 (987)
12 PRK09782 bacteriophage N4 rece 100.0 1.5E-26 3.3E-31 253.6 54.4 589 81-689 48-708 (987)
13 KOG4626 O-linked N-acetylgluco 100.0 1.3E-26 2.7E-31 224.1 26.7 433 113-677 53-509 (966)
14 KOG2002 TPR-containing nuclear 99.9 3.5E-23 7.6E-28 211.4 37.7 601 31-690 146-801 (1018)
15 KOG4626 O-linked N-acetylgluco 99.9 6.1E-24 1.3E-28 205.7 25.4 352 265-689 117-487 (966)
16 KOG2002 TPR-containing nuclear 99.9 8E-22 1.7E-26 201.6 38.5 543 62-671 146-763 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.9 3.4E-20 7.3E-25 201.3 35.0 189 494-687 369-571 (615)
18 TIGR00990 3a0801s09 mitochondr 99.9 1.1E-18 2.4E-23 189.5 37.4 267 370-685 307-595 (615)
19 PRK10049 pgaA outer membrane p 99.8 7.3E-18 1.6E-22 186.3 37.4 186 502-689 249-458 (765)
20 PRK14574 hmsH outer membrane p 99.8 7.4E-17 1.6E-21 174.1 41.4 176 239-414 40-229 (822)
21 PRK11788 tetratricopeptide rep 99.8 1.3E-18 2.9E-23 179.6 26.3 301 361-694 39-354 (389)
22 PRK15174 Vi polysaccharide exp 99.8 1.7E-17 3.6E-22 179.3 34.6 264 354-658 107-386 (656)
23 PRK11788 tetratricopeptide rep 99.8 2E-18 4.3E-23 178.3 26.4 288 240-593 42-354 (389)
24 KOG0495 HAT repeat protein [RN 99.8 3.4E-15 7.4E-20 146.7 46.4 598 60-704 265-895 (913)
25 KOG2076 RNA polymerase III tra 99.8 3.9E-15 8.6E-20 152.3 44.4 592 87-683 149-891 (895)
26 PRK15174 Vi polysaccharide exp 99.8 8.7E-17 1.9E-21 173.7 34.6 316 333-690 49-384 (656)
27 PRK10049 pgaA outer membrane p 99.8 9.9E-16 2.1E-20 169.5 39.7 163 496-661 278-464 (765)
28 PRK14574 hmsH outer membrane p 99.8 2.5E-15 5.4E-20 162.4 41.3 439 140-660 34-520 (822)
29 KOG2076 RNA polymerase III tra 99.8 1.1E-14 2.3E-19 149.2 37.3 536 111-670 142-786 (895)
30 KOG2003 TPR repeat-containing 99.7 3.8E-16 8.2E-21 146.5 21.0 452 176-675 206-711 (840)
31 KOG0495 HAT repeat protein [RN 99.7 3.9E-12 8.5E-17 125.6 44.3 591 29-666 265-893 (913)
32 KOG0547 Translocase of outer m 99.7 3.5E-14 7.6E-19 135.1 29.2 187 493-685 363-564 (606)
33 KOG2003 TPR repeat-containing 99.7 5.3E-15 1.2E-19 139.0 20.9 445 112-571 205-709 (840)
34 KOG1915 Cell cycle control pro 99.6 4.5E-12 9.7E-17 120.4 35.1 406 45-450 72-537 (677)
35 KOG3616 Selective LIM binding 99.6 1E-11 2.3E-16 124.0 38.2 591 50-713 593-1212(1636)
36 KOG1915 Cell cycle control pro 99.6 3.6E-12 7.8E-17 121.0 32.7 419 305-731 83-540 (677)
37 PF13429 TPR_15: Tetratricopep 99.6 1E-15 2.2E-20 149.1 9.2 214 467-685 56-275 (280)
38 KOG1155 Anaphase-promoting com 99.6 2.9E-12 6.4E-17 121.5 30.9 326 355-686 162-494 (559)
39 KOG1126 DNA-binding cell divis 99.6 1.6E-13 3.5E-18 136.4 22.0 274 403-685 334-618 (638)
40 KOG3616 Selective LIM binding 99.6 4.9E-10 1.1E-14 112.3 45.1 190 147-351 739-933 (1636)
41 KOG1155 Anaphase-promoting com 99.6 8.5E-12 1.9E-16 118.4 31.2 319 230-617 161-491 (559)
42 KOG1173 Anaphase-promoting com 99.6 4.4E-12 9.5E-17 123.6 29.6 254 427-686 251-517 (611)
43 KOG1126 DNA-binding cell divis 99.6 2.4E-13 5.2E-18 135.1 20.8 276 341-659 334-626 (638)
44 KOG1173 Anaphase-promoting com 99.5 5E-12 1.1E-16 123.2 26.7 485 14-564 15-530 (611)
45 KOG0547 Translocase of outer m 99.5 1E-11 2.3E-16 118.6 27.1 406 80-549 118-565 (606)
46 KOG2047 mRNA splicing factor [ 99.5 3.1E-09 6.8E-14 105.4 43.8 523 44-607 100-709 (835)
47 KOG2047 mRNA splicing factor [ 99.5 4.5E-09 9.7E-14 104.3 44.2 428 140-584 102-614 (835)
48 KOG1127 TPR repeat-containing 99.5 8.4E-11 1.8E-15 121.9 33.4 170 122-291 472-657 (1238)
49 PF13429 TPR_15: Tetratricopep 99.5 2.4E-14 5.2E-19 139.5 7.1 238 20-258 13-273 (280)
50 KOG1127 TPR repeat-containing 99.5 1.4E-10 3.1E-15 120.3 33.4 611 31-670 474-1192(1238)
51 PRK10747 putative protoheme IX 99.5 1.7E-10 3.6E-15 117.8 31.8 140 506-652 245-389 (398)
52 PRK10747 putative protoheme IX 99.5 5E-11 1.1E-15 121.6 27.2 275 338-618 96-387 (398)
53 TIGR00540 hemY_coli hemY prote 99.4 2.9E-10 6.2E-15 116.8 31.7 285 335-684 93-396 (409)
54 KOG3617 WD40 and TPR repeat-co 99.4 3E-09 6.5E-14 108.2 37.5 243 355-619 1078-1357(1416)
55 KOG3785 Uncharacterized conser 99.4 1.3E-09 2.9E-14 100.0 31.2 421 22-450 29-491 (557)
56 KOG0985 Vesicle coat protein c 99.4 5.8E-08 1.2E-12 101.3 46.1 260 387-685 983-1247(1666)
57 TIGR00540 hemY_coli hemY prote 99.4 1.4E-10 3.1E-15 119.0 27.8 217 467-683 130-360 (409)
58 TIGR02521 type_IV_pilW type IV 99.4 2E-11 4.3E-16 116.5 19.5 197 489-686 30-231 (234)
59 KOG4422 Uncharacterized conser 99.4 1.2E-08 2.5E-13 96.4 35.9 421 81-551 120-591 (625)
60 KOG4422 Uncharacterized conser 99.4 4.2E-09 9.1E-14 99.4 32.8 333 286-652 198-589 (625)
61 COG2956 Predicted N-acetylgluc 99.4 7.7E-11 1.7E-15 106.9 19.8 267 184-450 48-348 (389)
62 COG2956 Predicted N-acetylgluc 99.4 1.3E-10 2.8E-15 105.4 20.8 307 369-708 47-368 (389)
63 KOG1174 Anaphase-promoting com 99.4 5.3E-09 1.1E-13 98.3 31.5 271 354-664 229-511 (564)
64 KOG3617 WD40 and TPR repeat-co 99.3 2.1E-08 4.6E-13 102.2 36.6 117 15-136 757-886 (1416)
65 KOG3785 Uncharacterized conser 99.3 1.3E-09 2.8E-14 100.1 25.2 438 118-596 32-498 (557)
66 KOG4162 Predicted calmodulin-b 99.3 2.3E-09 4.9E-14 109.0 29.3 428 230-698 320-793 (799)
67 KOG2376 Signal recognition par 99.3 1.2E-08 2.5E-13 100.7 30.8 436 115-580 19-515 (652)
68 KOG1156 N-terminal acetyltrans 99.3 1.3E-08 2.9E-13 101.4 31.3 449 120-650 19-508 (700)
69 PRK11189 lipoprotein NlpI; Pro 99.3 2.8E-10 6E-15 110.9 19.1 211 470-689 41-267 (296)
70 KOG1129 TPR repeat-containing 99.3 1.2E-10 2.6E-15 105.6 14.8 224 425-689 228-460 (478)
71 KOG4318 Bicoid mRNA stability 99.3 8.9E-08 1.9E-12 99.0 37.0 93 597-689 712-810 (1088)
72 KOG2376 Signal recognition par 99.3 2E-07 4.3E-12 92.3 37.6 181 494-682 313-515 (652)
73 KOG1174 Anaphase-promoting com 99.3 9.4E-08 2E-12 90.1 33.1 300 367-733 206-520 (564)
74 COG3071 HemY Uncharacterized e 99.2 4.3E-09 9.4E-14 99.0 24.1 251 433-688 97-358 (400)
75 COG3071 HemY Uncharacterized e 99.2 1.6E-08 3.5E-13 95.2 27.4 279 339-651 97-388 (400)
76 PRK12370 invasion protein regu 99.2 1E-09 2.2E-14 117.3 22.4 193 489-688 337-536 (553)
77 COG3063 PilF Tfp pilus assembl 99.2 5.7E-10 1.2E-14 96.8 16.0 162 523-689 37-204 (250)
78 KOG0985 Vesicle coat protein c 99.2 6.2E-06 1.4E-10 86.7 47.3 296 293-618 982-1305(1666)
79 KOG1129 TPR repeat-containing 99.2 4.1E-10 8.9E-15 102.2 14.5 238 392-667 227-472 (478)
80 KOG1840 Kinesin light chain [C 99.2 9.9E-10 2.1E-14 111.2 18.8 227 459-685 203-477 (508)
81 PF13041 PPR_2: PPR repeat fam 99.2 9.6E-11 2.1E-15 78.9 6.3 50 519-568 1-50 (50)
82 PRK12370 invasion protein regu 99.2 2.8E-09 6.1E-14 113.9 20.8 177 503-686 317-501 (553)
83 TIGR02521 type_IV_pilW type IV 99.1 5.9E-09 1.3E-13 99.3 20.4 162 491-655 66-234 (234)
84 KOG1156 N-terminal acetyltrans 99.1 3.7E-07 8.1E-12 91.4 32.3 129 553-684 366-508 (700)
85 KOG4162 Predicted calmodulin-b 99.1 8.2E-08 1.8E-12 98.0 28.3 132 523-659 652-789 (799)
86 KOG4318 Bicoid mRNA stability 99.1 2.7E-07 5.8E-12 95.5 31.5 207 104-328 21-237 (1088)
87 COG3063 PilF Tfp pilus assembl 99.1 2.9E-08 6.2E-13 86.4 19.1 197 425-660 40-243 (250)
88 KOG1125 TPR repeat-containing 99.1 1E-08 2.2E-13 101.1 17.6 228 489-735 318-559 (579)
89 PF13041 PPR_2: PPR repeat fam 99.0 5.1E-10 1.1E-14 75.4 6.0 50 418-467 1-50 (50)
90 KOG0548 Molecular co-chaperone 99.0 1.4E-07 3E-12 92.5 24.6 373 302-688 9-456 (539)
91 PRK11189 lipoprotein NlpI; Pro 99.0 8E-08 1.7E-12 93.7 23.3 202 460-669 69-282 (296)
92 KOG1840 Kinesin light chain [C 99.0 3.7E-08 7.9E-13 100.0 20.3 161 492-652 285-478 (508)
93 KOG0624 dsRNA-activated protei 99.0 5.3E-07 1.1E-11 83.0 24.2 56 632-687 315-370 (504)
94 KOG0548 Molecular co-chaperone 99.0 2.1E-07 4.5E-12 91.3 22.5 166 496-671 304-473 (539)
95 KOG4340 Uncharacterized conser 98.9 1.2E-06 2.5E-11 79.2 24.6 301 18-323 13-338 (459)
96 KOG4340 Uncharacterized conser 98.9 1.6E-06 3.4E-11 78.4 24.4 300 49-383 13-336 (459)
97 KOG0624 dsRNA-activated protei 98.9 1.4E-06 3.1E-11 80.3 23.8 177 270-446 44-249 (504)
98 TIGR03302 OM_YfiO outer membra 98.9 8.3E-08 1.8E-12 91.0 16.6 180 489-688 32-233 (235)
99 PF04733 Coatomer_E: Coatomer 98.9 3.6E-07 7.8E-12 87.6 20.8 153 496-685 108-263 (290)
100 PF12569 NARP1: NMDA receptor- 98.9 2.7E-06 5.9E-11 87.8 28.5 124 525-653 198-334 (517)
101 cd05804 StaR_like StaR_like; a 98.9 1.9E-06 4.1E-11 87.8 27.2 197 492-688 116-337 (355)
102 PF04733 Coatomer_E: Coatomer 98.8 3.2E-07 6.9E-12 88.0 17.1 235 22-260 8-263 (290)
103 PF12569 NARP1: NMDA receptor- 98.8 3.3E-06 7.1E-11 87.2 25.5 280 334-618 12-331 (517)
104 KOG1125 TPR repeat-containing 98.8 8.5E-07 1.8E-11 87.9 20.0 213 367-583 295-525 (579)
105 PRK10370 formate-dependent nit 98.8 2.3E-07 4.9E-12 83.9 14.8 147 528-689 23-175 (198)
106 PRK15359 type III secretion sy 98.7 9.5E-08 2.1E-12 81.6 10.9 121 542-669 14-137 (144)
107 PLN02789 farnesyltranstransfer 98.7 1.8E-06 3.9E-11 83.9 20.3 168 499-671 80-268 (320)
108 PRK15363 pathogenicity island 98.7 2E-07 4.4E-12 77.5 11.4 100 587-686 28-131 (157)
109 PRK04841 transcriptional regul 98.7 9.7E-05 2.1E-09 85.7 36.8 194 494-687 535-760 (903)
110 KOG1914 mRNA cleavage and poly 98.7 0.00045 9.8E-09 68.5 34.2 174 436-610 347-528 (656)
111 PRK15359 type III secretion sy 98.6 3.4E-07 7.3E-12 78.2 10.7 108 577-689 14-123 (144)
112 cd05804 StaR_like StaR_like; a 98.6 3.7E-05 8.1E-10 78.3 26.9 184 503-688 93-294 (355)
113 PRK15179 Vi polysaccharide bio 98.6 3.4E-06 7.5E-11 90.6 18.5 133 519-656 84-220 (694)
114 KOG1128 Uncharacterized conser 98.5 3.2E-06 6.9E-11 86.2 16.6 189 491-689 399-618 (777)
115 PLN02789 farnesyltranstransfer 98.5 5.5E-06 1.2E-10 80.6 17.4 185 498-687 45-250 (320)
116 PRK04841 transcriptional regul 98.5 0.00029 6.3E-09 81.8 33.6 349 237-585 345-760 (903)
117 TIGR03302 OM_YfiO outer membra 98.5 7.4E-06 1.6E-10 77.7 16.5 182 454-656 32-235 (235)
118 COG5010 TadD Flp pilus assembl 98.5 3.1E-06 6.7E-11 75.8 12.5 153 45-198 66-229 (257)
119 PRK10370 formate-dependent nit 98.5 8.8E-06 1.9E-10 73.6 15.7 154 497-662 23-182 (198)
120 KOG1128 Uncharacterized conser 98.5 5.7E-06 1.2E-10 84.5 15.6 217 421-656 399-619 (777)
121 KOG1070 rRNA processing protei 98.4 6.9E-06 1.5E-10 89.6 17.0 200 487-690 1455-1666(1710)
122 TIGR02552 LcrH_SycD type III s 98.4 1.4E-06 3E-11 74.3 9.7 101 588-688 12-115 (135)
123 COG4783 Putative Zn-dependent 98.4 6.9E-05 1.5E-09 73.5 20.8 116 566-684 316-434 (484)
124 COG5010 TadD Flp pilus assembl 98.4 9.2E-06 2E-10 72.9 13.4 177 494-675 70-252 (257)
125 COG4783 Putative Zn-dependent 98.4 6.2E-05 1.3E-09 73.8 20.0 149 519-689 304-456 (484)
126 PRK15179 Vi polysaccharide bio 98.4 2.5E-05 5.3E-10 84.2 18.8 141 486-631 82-229 (694)
127 KOG1070 rRNA processing protei 98.3 7.5E-05 1.6E-09 81.9 21.2 202 354-556 1455-1669(1710)
128 KOG3060 Uncharacterized conser 98.3 1.6E-05 3.5E-10 70.6 12.9 182 503-689 25-222 (289)
129 PF12854 PPR_1: PPR repeat 98.3 8.3E-07 1.8E-11 53.3 3.5 32 551-582 2-33 (34)
130 KOG3060 Uncharacterized conser 98.3 9.8E-05 2.1E-09 65.8 17.1 164 496-662 58-229 (289)
131 PRK14720 transcript cleavage f 98.3 0.00019 4.1E-09 78.2 22.7 57 354-410 28-87 (906)
132 PF12854 PPR_1: PPR repeat 98.2 1.3E-06 2.9E-11 52.4 3.6 32 485-516 2-33 (34)
133 KOG3081 Vesicle coat complex C 98.2 0.0004 8.7E-09 62.5 20.4 76 603-678 184-261 (299)
134 KOG3081 Vesicle coat complex C 98.2 0.00013 2.9E-09 65.5 17.3 112 211-324 117-236 (299)
135 KOG0550 Molecular chaperone (D 98.2 5.2E-06 1.1E-10 78.8 8.3 99 599-697 256-360 (486)
136 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 1.8E-05 3.8E-10 78.6 12.3 121 560-685 173-295 (395)
137 KOG0553 TPR repeat-containing 98.2 1.5E-05 3.3E-10 73.0 10.5 104 566-672 91-197 (304)
138 PF13414 TPR_11: TPR repeat; P 98.2 3E-06 6.4E-11 62.0 4.6 64 623-686 2-66 (69)
139 TIGR02552 LcrH_SycD type III s 98.1 3.5E-05 7.7E-10 65.6 11.2 114 543-661 5-122 (135)
140 PRK14720 transcript cleavage f 98.1 0.00063 1.4E-08 74.3 22.0 144 359-532 118-268 (906)
141 PF09976 TPR_21: Tetratricopep 98.1 5.2E-05 1.1E-09 65.2 11.3 114 569-683 24-143 (145)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 6.5E-05 1.4E-09 74.7 13.3 126 492-622 171-298 (395)
143 PF12895 Apc3: Anaphase-promot 98.1 3E-06 6.4E-11 64.8 3.2 78 605-683 2-83 (84)
144 PF13432 TPR_16: Tetratricopep 98.0 6.9E-06 1.5E-10 59.2 4.6 59 630-688 3-61 (65)
145 KOG2053 Mitochondrial inherita 98.0 0.031 6.8E-07 59.6 37.4 91 493-584 439-535 (932)
146 PF07079 DUF1347: Protein of u 98.0 0.017 3.8E-07 56.5 28.8 73 612-685 444-522 (549)
147 KOG1914 mRNA cleavage and poly 98.0 0.021 4.6E-07 57.2 35.8 162 520-684 365-536 (656)
148 TIGR00756 PPR pentatricopeptid 98.0 1.3E-05 2.7E-10 49.2 4.6 35 522-556 1-35 (35)
149 PRK15331 chaperone protein Sic 98.0 3.6E-05 7.8E-10 64.6 8.6 100 587-686 31-133 (165)
150 KOG2041 WD40 repeat protein [G 98.0 0.015 3.3E-07 59.8 28.1 200 200-415 690-905 (1189)
151 cd00189 TPR Tetratricopeptide 98.0 3.7E-05 8.1E-10 60.8 8.6 94 594-687 2-97 (100)
152 PF09976 TPR_21: Tetratricopep 98.0 0.00019 4.2E-09 61.6 13.3 124 524-651 15-145 (145)
153 TIGR02795 tol_pal_ybgF tol-pal 98.0 4.6E-05 9.9E-10 63.2 9.2 95 594-688 4-106 (119)
154 KOG2053 Mitochondrial inherita 98.0 0.041 8.8E-07 58.8 34.2 158 523-685 438-606 (932)
155 KOG2041 WD40 repeat protein [G 98.0 0.011 2.3E-07 60.8 26.3 161 122-299 748-913 (1189)
156 PLN03088 SGT1, suppressor of 97.9 8.4E-05 1.8E-09 74.4 11.7 102 563-667 9-113 (356)
157 COG4235 Cytochrome c biogenesi 97.9 4.8E-05 1E-09 70.4 8.6 112 587-698 150-267 (287)
158 KOG0553 TPR repeat-containing 97.9 6.9E-05 1.5E-09 68.8 9.2 91 598-688 87-179 (304)
159 PF13431 TPR_17: Tetratricopep 97.9 6.9E-06 1.5E-10 49.2 1.7 32 647-678 2-33 (34)
160 PF14559 TPR_19: Tetratricopep 97.9 2.3E-05 4.9E-10 57.1 4.8 52 635-686 2-53 (68)
161 KOG1130 Predicted G-alpha GTPa 97.9 1.7E-05 3.7E-10 75.2 4.9 118 203-320 196-340 (639)
162 PF13812 PPR_3: Pentatricopept 97.9 3.1E-05 6.7E-10 47.0 4.4 33 522-554 2-34 (34)
163 KOG1130 Predicted G-alpha GTPa 97.9 1.2E-05 2.5E-10 76.3 3.6 258 22-291 24-342 (639)
164 PF13371 TPR_9: Tetratricopept 97.8 4E-05 8.8E-10 56.7 5.9 59 631-689 2-60 (73)
165 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00013 2.8E-09 60.5 9.5 99 562-660 8-112 (119)
166 TIGR00756 PPR pentatricopeptid 97.8 3.6E-05 7.9E-10 47.1 4.4 34 421-454 1-34 (35)
167 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.043 9.2E-07 53.7 26.8 123 491-618 398-528 (660)
168 KOG0550 Molecular chaperone (D 97.8 0.0025 5.3E-08 61.3 17.7 325 335-680 58-436 (486)
169 COG3898 Uncharacterized membra 97.8 0.038 8.3E-07 53.0 25.1 255 460-727 159-430 (531)
170 PRK02603 photosystem I assembl 97.7 0.00016 3.6E-09 64.3 8.9 97 592-688 35-150 (172)
171 PLN03088 SGT1, suppressor of 97.7 0.00023 5E-09 71.3 10.6 105 525-634 6-113 (356)
172 PF13432 TPR_16: Tetratricopep 97.7 0.0001 2.2E-09 53.0 5.6 61 598-658 3-65 (65)
173 PRK15363 pathogenicity island 97.7 0.00022 4.8E-09 59.7 8.2 89 78-166 36-129 (157)
174 PRK10153 DNA-binding transcrip 97.7 0.0011 2.5E-08 69.3 15.3 41 515-557 331-376 (517)
175 PF14938 SNAP: Soluble NSF att 97.7 0.0044 9.6E-08 60.2 18.3 97 523-619 157-264 (282)
176 PF13812 PPR_3: Pentatricopept 97.7 8.4E-05 1.8E-09 45.0 4.1 33 421-453 2-34 (34)
177 CHL00033 ycf3 photosystem I as 97.6 0.00024 5.1E-09 63.0 8.4 92 592-683 35-138 (168)
178 PRK02603 photosystem I assembl 97.6 0.00094 2E-08 59.4 11.9 131 519-673 33-166 (172)
179 PF14938 SNAP: Soluble NSF att 97.6 0.0088 1.9E-07 58.1 19.3 119 527-660 100-232 (282)
180 CHL00033 ycf3 photosystem I as 97.6 0.0016 3.4E-08 57.8 13.0 122 522-674 36-167 (168)
181 PRK10866 outer membrane biogen 97.5 0.0031 6.7E-08 59.2 14.8 54 632-685 183-239 (243)
182 PF12895 Apc3: Anaphase-promot 97.5 0.00015 3.3E-09 55.3 4.8 79 534-616 2-82 (84)
183 PF01535 PPR: PPR repeat; Int 97.5 0.00015 3.2E-09 42.8 3.6 31 522-552 1-31 (31)
184 PF12688 TPR_5: Tetratrico pep 97.5 0.0016 3.4E-08 52.8 10.3 93 524-616 4-99 (120)
185 PRK10153 DNA-binding transcrip 97.4 0.002 4.3E-08 67.6 13.5 135 552-690 333-485 (517)
186 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.00054 1.2E-08 67.7 8.4 65 623-687 74-141 (453)
187 COG4700 Uncharacterized protei 97.4 0.0063 1.4E-07 51.7 13.4 131 552-685 85-220 (251)
188 COG3898 Uncharacterized membra 97.4 0.088 1.9E-06 50.7 22.3 226 452-685 115-356 (531)
189 KOG1538 Uncharacterized conser 97.4 0.016 3.4E-07 59.1 18.2 121 306-450 727-847 (1081)
190 PF07079 DUF1347: Protein of u 97.4 0.17 3.7E-06 49.9 28.9 85 540-629 440-530 (549)
191 PF13428 TPR_14: Tetratricopep 97.4 0.00022 4.8E-09 46.1 3.5 42 625-666 2-43 (44)
192 PRK10803 tol-pal system protei 97.4 0.00085 1.8E-08 63.3 8.8 92 595-686 146-245 (263)
193 PF14559 TPR_19: Tetratricopep 97.4 0.00017 3.7E-09 52.4 3.3 60 605-664 4-65 (68)
194 cd00189 TPR Tetratricopeptide 97.3 0.0013 2.7E-08 51.7 8.3 60 523-584 2-62 (100)
195 PF01535 PPR: PPR repeat; Int 97.3 0.00038 8.3E-09 41.0 3.7 31 421-451 1-31 (31)
196 PF04840 Vps16_C: Vps16, C-ter 97.3 0.22 4.8E-06 48.7 27.1 106 235-348 179-284 (319)
197 PF13414 TPR_11: TPR repeat; P 97.2 0.00043 9.3E-09 50.5 4.0 64 592-655 3-69 (69)
198 COG4700 Uncharacterized protei 97.2 0.0061 1.3E-07 51.8 11.0 110 580-689 77-191 (251)
199 PF12688 TPR_5: Tetratrico pep 97.2 0.0036 7.7E-08 50.8 9.3 87 597-683 6-100 (120)
200 PF05843 Suf: Suppressor of fo 97.1 0.0084 1.8E-07 57.9 13.2 134 523-659 3-142 (280)
201 KOG1538 Uncharacterized conser 97.1 0.045 9.8E-07 56.0 17.8 45 114-164 638-682 (1081)
202 PRK10866 outer membrane biogen 97.1 0.016 3.5E-07 54.4 14.0 55 80-134 35-95 (243)
203 PRK10803 tol-pal system protei 97.1 0.0046 1E-07 58.4 10.2 93 567-659 154-252 (263)
204 PF13525 YfiO: Outer membrane 97.1 0.021 4.6E-07 52.2 14.3 49 631-679 148-199 (203)
205 PF13281 DUF4071: Domain of un 97.0 0.063 1.4E-06 52.9 17.9 161 495-658 146-339 (374)
206 KOG0543 FKBP-type peptidyl-pro 97.0 0.0028 6.1E-08 61.3 8.5 82 626-733 259-340 (397)
207 PF06239 ECSIT: Evolutionarily 97.0 0.019 4.1E-07 50.8 12.6 126 451-591 43-174 (228)
208 PF13371 TPR_9: Tetratricopept 96.9 0.0016 3.6E-08 48.0 5.0 65 600-664 3-69 (73)
209 PF04840 Vps16_C: Vps16, C-ter 96.8 0.61 1.3E-05 45.7 29.1 102 333-443 184-285 (319)
210 PF10037 MRP-S27: Mitochondria 96.8 0.03 6.6E-07 56.4 13.5 121 449-569 60-186 (429)
211 PF05843 Suf: Suppressor of fo 96.7 0.034 7.4E-07 53.8 13.5 126 457-584 3-135 (280)
212 KOG2796 Uncharacterized conser 96.7 0.062 1.4E-06 48.7 13.6 135 424-560 181-323 (366)
213 KOG1258 mRNA processing protei 96.7 0.98 2.1E-05 46.7 25.7 182 489-673 296-490 (577)
214 KOG2796 Uncharacterized conser 96.7 0.088 1.9E-06 47.8 14.2 138 523-660 179-322 (366)
215 COG4235 Cytochrome c biogenesi 96.7 0.0097 2.1E-07 55.5 8.7 93 107-199 155-255 (287)
216 PRK11906 transcriptional regul 96.7 0.015 3.2E-07 58.0 10.4 58 626-683 340-397 (458)
217 KOG2280 Vacuolar assembly/sort 96.6 0.87 1.9E-05 48.2 22.9 107 268-381 688-794 (829)
218 COG0457 NrfG FOG: TPR repeat [ 96.6 0.68 1.5E-05 43.7 23.8 195 490-688 59-266 (291)
219 PF13424 TPR_12: Tetratricopep 96.6 0.0022 4.8E-08 48.0 3.4 60 626-685 7-73 (78)
220 COG4105 ComL DNA uptake lipopr 96.6 0.4 8.6E-06 44.1 17.8 165 523-688 36-234 (254)
221 PF03704 BTAD: Bacterial trans 96.6 0.026 5.7E-07 48.5 10.3 109 566-686 16-124 (146)
222 COG4785 NlpI Lipoprotein NlpI, 96.5 0.069 1.5E-06 46.9 12.3 176 502-686 77-265 (297)
223 KOG1585 Protein required for f 96.5 0.047 1E-06 48.9 11.5 161 80-258 34-215 (308)
224 KOG4555 TPR repeat-containing 96.5 0.014 3E-07 46.4 7.4 91 599-689 50-146 (175)
225 PF08579 RPM2: Mitochondrial r 96.5 0.024 5.1E-07 44.2 8.3 83 463-568 33-116 (120)
226 KOG1258 mRNA processing protei 96.5 1.3 2.8E-05 45.9 26.1 176 388-565 297-484 (577)
227 KOG2280 Vacuolar assembly/sort 96.4 1.6 3.5E-05 46.3 26.9 101 499-615 693-793 (829)
228 PF13512 TPR_18: Tetratricopep 96.4 0.047 1E-06 45.2 10.0 89 598-686 16-127 (142)
229 PF10037 MRP-S27: Mitochondria 96.4 0.039 8.4E-07 55.6 11.5 113 356-468 65-186 (429)
230 PF13525 YfiO: Outer membrane 96.4 0.24 5.2E-06 45.3 15.9 46 565-610 150-196 (203)
231 PRK15331 chaperone protein Sic 96.3 0.012 2.6E-07 49.8 6.1 88 80-167 40-132 (165)
232 PF13424 TPR_12: Tetratricopep 96.3 0.0023 4.9E-08 48.0 1.8 61 593-653 6-75 (78)
233 PF08579 RPM2: Mitochondrial r 96.2 0.085 1.8E-06 41.3 9.9 77 426-502 31-116 (120)
234 COG1729 Uncharacterized protei 96.1 0.028 6E-07 51.9 8.1 92 567-658 152-249 (262)
235 KOG2066 Vacuolar assembly/sort 96.1 2.4 5.1E-05 45.4 22.5 101 20-120 361-467 (846)
236 KOG0543 FKBP-type peptidyl-pro 96.1 0.033 7.2E-07 54.1 8.8 139 527-687 214-355 (397)
237 PRK11906 transcriptional regul 96.0 0.29 6.2E-06 49.2 15.3 157 522-682 252-431 (458)
238 PF13512 TPR_18: Tetratricopep 96.0 0.088 1.9E-06 43.6 9.9 119 523-658 12-133 (142)
239 PF00515 TPR_1: Tetratricopept 96.0 0.012 2.5E-07 35.4 3.8 33 625-657 2-34 (34)
240 PF07719 TPR_2: Tetratricopept 95.9 0.019 4E-07 34.4 4.4 33 625-657 2-34 (34)
241 COG1729 Uncharacterized protei 95.9 0.053 1.2E-06 50.1 9.0 92 524-618 145-241 (262)
242 PF13281 DUF4071: Domain of un 95.9 0.073 1.6E-06 52.4 10.4 30 176-205 310-339 (374)
243 COG4785 NlpI Lipoprotein NlpI, 95.9 0.15 3.2E-06 44.9 10.9 152 77-233 99-268 (297)
244 COG3118 Thioredoxin domain-con 95.8 0.16 3.5E-06 47.4 11.6 155 564-726 142-301 (304)
245 COG3118 Thioredoxin domain-con 95.7 0.2 4.4E-06 46.8 11.7 116 53-168 141-264 (304)
246 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.22 4.8E-06 49.9 12.7 65 518-584 72-140 (453)
247 PF09205 DUF1955: Domain of un 95.6 0.79 1.7E-05 37.0 12.9 140 532-690 13-152 (161)
248 PF06239 ECSIT: Evolutionarily 95.4 0.14 3.1E-06 45.5 9.3 97 511-608 35-154 (228)
249 KOG2610 Uncharacterized conser 95.4 0.37 8.1E-06 45.6 12.3 112 503-618 116-235 (491)
250 COG0457 NrfG FOG: TPR repeat [ 95.3 2.5 5.4E-05 39.6 23.1 163 490-656 95-268 (291)
251 KOG1920 IkappaB kinase complex 95.3 2.9 6.2E-05 47.1 20.4 155 122-289 894-1051(1265)
252 PF03704 BTAD: Bacterial trans 95.3 0.092 2E-06 45.1 8.0 70 524-594 65-138 (146)
253 PF04184 ST7: ST7 protein; In 95.2 0.96 2.1E-05 45.7 15.3 97 562-658 265-380 (539)
254 KOG2066 Vacuolar assembly/sort 95.2 5.5 0.00012 42.8 25.2 98 179-276 364-467 (846)
255 COG4105 ComL DNA uptake lipopr 95.1 2.3 5E-05 39.2 16.3 24 527-550 173-196 (254)
256 KOG1941 Acetylcholine receptor 95.1 0.5 1.1E-05 45.3 12.4 45 430-474 16-62 (518)
257 KOG1585 Protein required for f 95.1 2.6 5.6E-05 38.4 16.5 14 535-548 124-137 (308)
258 KOG4234 TPR repeat-containing 94.9 0.047 1E-06 47.3 4.8 58 631-688 141-198 (271)
259 PF04053 Coatomer_WDAD: Coatom 94.9 1.5 3.2E-05 45.3 16.5 132 266-414 297-428 (443)
260 PF04053 Coatomer_WDAD: Coatom 94.7 1.6 3.4E-05 45.1 16.1 154 273-444 270-426 (443)
261 KOG4648 Uncharacterized conser 94.6 0.049 1.1E-06 51.3 4.4 110 563-679 104-216 (536)
262 PF14432 DYW_deaminase: DYW fa 94.3 0.039 8.6E-07 44.5 2.9 28 694-725 2-29 (116)
263 PF13181 TPR_8: Tetratricopept 94.2 0.079 1.7E-06 31.6 3.5 32 626-657 3-34 (34)
264 PF13176 TPR_7: Tetratricopept 93.9 0.073 1.6E-06 32.3 3.0 26 660-685 1-26 (36)
265 PRK10941 hypothetical protein; 93.8 0.42 9.2E-06 45.3 9.2 82 627-731 184-265 (269)
266 COG5107 RNA14 Pre-mRNA 3'-end 93.8 8.1 0.00018 38.7 29.9 70 36-105 30-104 (660)
267 PF10300 DUF3808: Protein of u 93.7 1.4 3.1E-05 46.1 13.9 161 524-687 191-376 (468)
268 KOG2114 Vacuolar assembly/sort 93.7 13 0.00027 40.6 26.8 172 20-198 339-517 (933)
269 KOG1920 IkappaB kinase complex 93.7 16 0.00034 41.7 24.2 131 244-383 919-1052(1265)
270 KOG1941 Acetylcholine receptor 93.6 2.5 5.4E-05 40.8 13.5 122 461-582 128-272 (518)
271 PF12921 ATP13: Mitochondrial 93.6 0.55 1.2E-05 38.6 8.4 49 587-635 47-99 (126)
272 smart00299 CLH Clathrin heavy 93.6 4.1 8.8E-05 34.5 14.9 123 112-244 11-136 (140)
273 PF02259 FAT: FAT domain; Int 93.5 9.4 0.0002 38.6 20.6 151 519-671 144-305 (352)
274 smart00299 CLH Clathrin heavy 93.5 3.4 7.4E-05 35.0 13.7 121 51-182 12-136 (140)
275 PF10300 DUF3808: Protein of u 93.5 2.3 4.9E-05 44.7 14.9 88 496-584 273-375 (468)
276 PF12921 ATP13: Mitochondrial 93.4 0.63 1.4E-05 38.3 8.4 94 491-600 3-96 (126)
277 PRK12798 chemotaxis protein; R 93.2 10 0.00022 38.0 19.4 180 502-684 124-321 (421)
278 TIGR02561 HrpB1_HrpK type III 93.1 0.35 7.6E-06 40.2 6.4 54 636-689 22-75 (153)
279 KOG1464 COP9 signalosome, subu 93.1 7.1 0.00015 36.1 20.4 235 370-636 40-316 (440)
280 PF09613 HrpB1_HrpK: Bacterial 93.1 0.35 7.6E-06 41.0 6.6 54 635-688 21-74 (160)
281 KOG4555 TPR repeat-containing 92.9 0.27 5.8E-06 39.4 5.2 55 633-687 52-106 (175)
282 PF04184 ST7: ST7 protein; In 92.7 2.6 5.6E-05 42.8 12.9 143 530-686 177-323 (539)
283 PF10345 Cohesin_load: Cohesin 92.6 19 0.00041 39.6 27.2 56 630-685 540-604 (608)
284 PF13176 TPR_7: Tetratricopept 92.3 0.24 5.1E-06 30.1 3.5 29 626-654 1-29 (36)
285 PF13428 TPR_14: Tetratricopep 92.2 0.48 1E-05 30.4 5.0 33 523-557 3-35 (44)
286 KOG3941 Intermediate in Toll s 91.9 2.2 4.7E-05 39.7 10.3 100 470-584 87-187 (406)
287 COG4649 Uncharacterized protei 91.6 1.9 4.2E-05 36.8 8.9 111 150-260 68-194 (221)
288 COG4649 Uncharacterized protei 91.4 8.6 0.00019 33.1 14.6 125 531-659 68-201 (221)
289 PF07719 TPR_2: Tetratricopept 91.3 0.16 3.4E-06 30.2 1.9 30 659-688 2-31 (34)
290 PRK09687 putative lyase; Provi 91.3 15 0.00032 35.6 22.4 75 386-466 204-278 (280)
291 PF00515 TPR_1: Tetratricopept 91.1 0.39 8.5E-06 28.5 3.5 31 523-555 3-33 (34)
292 PF09613 HrpB1_HrpK: Bacterial 90.9 4.5 9.7E-05 34.5 10.7 85 567-655 21-108 (160)
293 KOG4234 TPR repeat-containing 90.9 1.4 3.1E-05 38.5 7.8 98 567-664 106-208 (271)
294 PF06552 TOM20_plant: Plant sp 90.4 0.54 1.2E-05 40.6 4.8 34 640-673 51-84 (186)
295 KOG3941 Intermediate in Toll s 90.3 2.3 4.9E-05 39.5 8.9 100 509-609 53-175 (406)
296 PF14853 Fis1_TPR_C: Fis1 C-te 90.1 0.66 1.4E-05 31.1 4.1 36 629-664 6-41 (53)
297 KOG4648 Uncharacterized conser 90.1 0.69 1.5E-05 44.0 5.7 94 527-625 103-199 (536)
298 COG3629 DnrI DNA-binding trans 90.0 1.6 3.5E-05 41.3 8.2 71 491-561 154-232 (280)
299 PF07721 TPR_4: Tetratricopept 89.7 0.41 8.9E-06 26.4 2.5 24 659-682 2-25 (26)
300 PF00637 Clathrin: Region in C 89.6 0.042 9.1E-07 47.0 -2.4 65 562-639 76-140 (143)
301 PF08631 SPO22: Meiosis protei 89.6 21 0.00046 34.6 20.9 18 634-651 256-273 (278)
302 KOG2610 Uncharacterized conser 89.4 2.5 5.4E-05 40.3 8.6 161 533-696 115-285 (491)
303 PF14853 Fis1_TPR_C: Fis1 C-te 89.4 1 2.2E-05 30.2 4.6 51 660-736 3-53 (53)
304 PF10602 RPN7: 26S proteasome 89.3 4.4 9.4E-05 35.9 10.0 61 524-584 39-101 (177)
305 PF13174 TPR_6: Tetratricopept 89.1 0.27 5.8E-06 28.9 1.6 26 661-686 3-28 (33)
306 COG2976 Uncharacterized protei 89.1 9.1 0.0002 33.8 11.2 119 539-658 70-193 (207)
307 KOG2114 Vacuolar assembly/sort 88.9 41 0.00088 37.0 25.4 51 598-649 711-761 (933)
308 PF13174 TPR_6: Tetratricopept 88.5 0.79 1.7E-05 26.8 3.4 30 628-657 4-33 (33)
309 PF00637 Clathrin: Region in C 88.2 0.038 8.3E-07 47.3 -3.6 128 461-607 13-140 (143)
310 PF13431 TPR_17: Tetratricopep 88.0 0.52 1.1E-05 28.1 2.3 25 136-160 9-33 (34)
311 KOG1586 Protein required for f 87.9 21 0.00046 32.6 14.3 20 637-656 167-186 (288)
312 PRK09687 putative lyase; Provi 87.9 27 0.00058 33.8 24.9 135 356-500 141-277 (280)
313 KOG0890 Protein kinase of the 87.7 86 0.0019 39.3 22.4 62 388-449 1670-1731(2382)
314 KOG3364 Membrane protein invol 87.5 4.9 0.00011 32.9 8.0 26 633-658 80-105 (149)
315 PF11207 DUF2989: Protein of u 87.2 2.6 5.7E-05 37.4 7.0 76 602-678 117-198 (203)
316 COG2976 Uncharacterized protei 87.0 1.4 3.1E-05 38.5 5.2 103 33-135 70-186 (207)
317 KOG0376 Serine-threonine phosp 86.9 0.67 1.5E-05 46.5 3.6 92 566-660 14-108 (476)
318 smart00028 TPR Tetratricopepti 86.9 1.2 2.7E-05 25.3 3.7 30 627-656 4-33 (34)
319 PF13181 TPR_8: Tetratricopept 86.8 0.96 2.1E-05 26.8 3.1 28 659-686 2-29 (34)
320 PF13374 TPR_10: Tetratricopep 86.1 0.95 2.1E-05 28.3 3.0 27 660-686 4-30 (42)
321 KOG1586 Protein required for f 85.9 28 0.0006 31.9 14.7 59 602-660 164-231 (288)
322 TIGR02508 type_III_yscG type I 85.5 14 0.0003 28.5 8.9 62 497-561 46-107 (115)
323 KOG1308 Hsp70-interacting prot 85.5 0.65 1.4E-05 44.3 2.6 90 605-694 127-218 (377)
324 KOG0276 Vesicle coat complex C 85.4 9.9 0.00021 39.6 10.8 111 58-187 598-708 (794)
325 KOG4279 Serine/threonine prote 85.4 20 0.00043 38.6 13.1 103 531-657 297-399 (1226)
326 KOG4642 Chaperone-dependent E3 84.7 2.1 4.5E-05 38.8 5.2 86 565-653 19-107 (284)
327 PF07721 TPR_4: Tetratricopept 84.1 1.9 4.1E-05 23.7 3.1 22 143-164 4-25 (26)
328 KOG0276 Vesicle coat complex C 84.1 14 0.0003 38.7 11.1 92 245-349 598-689 (794)
329 PF13170 DUF4003: Protein of u 83.5 46 0.001 32.4 15.5 65 537-602 159-227 (297)
330 PF09205 DUF1955: Domain of un 83.2 24 0.00052 29.0 13.0 82 502-585 68-149 (161)
331 COG3629 DnrI DNA-binding trans 82.6 5.1 0.00011 38.1 7.2 62 592-653 153-216 (280)
332 PF10602 RPN7: 26S proteasome 82.5 6.3 0.00014 34.9 7.5 60 491-550 37-102 (177)
333 PF14561 TPR_20: Tetratricopep 82.4 2.7 5.9E-05 32.1 4.5 44 644-687 8-51 (90)
334 KOG2396 HAT (Half-A-TPR) repea 82.3 65 0.0014 33.3 30.5 88 562-652 466-558 (568)
335 PRK13800 putative oxidoreducta 82.3 1.1E+02 0.0023 35.8 22.7 251 105-360 632-887 (897)
336 PF06552 TOM20_plant: Plant sp 82.2 14 0.0003 32.3 8.9 88 572-690 51-139 (186)
337 PF02259 FAT: FAT domain; Int 82.0 36 0.00079 34.3 14.1 67 623-689 145-215 (352)
338 KOG0545 Aryl-hydrocarbon recep 82.0 5.1 0.00011 36.5 6.5 90 598-687 184-293 (329)
339 KOG0551 Hsp90 co-chaperone CNS 81.6 3.7 7.9E-05 39.3 5.8 93 592-684 81-179 (390)
340 KOG2300 Uncharacterized conser 81.5 37 0.0008 34.7 12.7 196 63-258 299-552 (629)
341 KOG0890 Protein kinase of the 81.1 1.6E+02 0.0035 37.1 23.9 112 331-445 1388-1508(2382)
342 PRK13800 putative oxidoreducta 81.1 1.2E+02 0.0025 35.5 23.9 156 289-448 722-880 (897)
343 TIGR02561 HrpB1_HrpK type III 80.9 22 0.00047 30.0 9.3 63 569-634 23-87 (153)
344 PF13374 TPR_10: Tetratricopep 80.9 3.3 7.2E-05 25.7 3.9 28 522-549 3-30 (42)
345 PRK15180 Vi polysaccharide bio 80.4 14 0.00029 37.4 9.4 121 533-657 301-424 (831)
346 PF02284 COX5A: Cytochrome c o 80.2 8.6 0.00019 29.7 6.2 59 539-599 28-86 (108)
347 cd00923 Cyt_c_Oxidase_Va Cytoc 80.1 11 0.00023 28.9 6.6 62 536-599 22-83 (103)
348 KOG4570 Uncharacterized conser 79.5 13 0.00029 35.3 8.5 99 485-584 59-163 (418)
349 PF04910 Tcf25: Transcriptiona 79.4 35 0.00075 34.5 12.3 56 631-686 110-167 (360)
350 PF09986 DUF2225: Uncharacteri 78.5 10 0.00022 34.8 7.7 63 626-688 120-195 (214)
351 TIGR03504 FimV_Cterm FimV C-te 77.8 3.9 8.6E-05 26.1 3.3 27 662-688 3-29 (44)
352 COG4455 ImpE Protein of avirul 77.3 9.1 0.0002 34.4 6.5 65 595-659 4-70 (273)
353 smart00028 TPR Tetratricopepti 77.0 3.4 7.3E-05 23.3 3.0 28 659-686 2-29 (34)
354 cd00923 Cyt_c_Oxidase_Va Cytoc 76.6 13 0.00029 28.4 6.2 56 609-664 27-82 (103)
355 PF04097 Nic96: Nup93/Nic96; 76.5 1.3E+02 0.0028 33.2 22.6 86 364-450 265-357 (613)
356 TIGR02508 type_III_yscG type I 76.1 34 0.00074 26.5 8.4 50 398-450 49-98 (115)
357 COG3947 Response regulator con 76.0 8.2 0.00018 36.3 6.1 59 628-686 283-341 (361)
358 PF07720 TPR_3: Tetratricopept 75.2 9.4 0.0002 23.1 4.3 32 626-657 3-36 (36)
359 PF02284 COX5A: Cytochrome c o 75.0 17 0.00037 28.2 6.5 55 610-664 31-85 (108)
360 PF04910 Tcf25: Transcriptiona 74.1 1E+02 0.0023 31.1 14.5 134 518-655 37-224 (360)
361 PRK15180 Vi polysaccharide bio 73.7 10 0.00023 38.2 6.6 128 503-633 302-434 (831)
362 smart00386 HAT HAT (Half-A-TPR 73.4 4.7 0.0001 23.2 2.9 30 638-667 1-30 (33)
363 KOG3824 Huntingtin interacting 73.1 9.2 0.0002 36.1 5.7 48 635-682 127-174 (472)
364 KOG4507 Uncharacterized conser 72.8 12 0.00026 38.9 6.9 98 568-668 619-720 (886)
365 PF09477 Type_III_YscG: Bacter 72.8 40 0.00087 26.5 8.0 85 471-559 22-106 (116)
366 PF08631 SPO22: Meiosis protei 72.8 95 0.0021 30.1 20.4 60 390-449 86-150 (278)
367 PF07035 Mic1: Colon cancer-as 72.8 64 0.0014 28.1 14.4 88 518-618 26-115 (167)
368 PF11207 DUF2989: Protein of u 71.9 17 0.00037 32.5 6.9 73 539-612 124-198 (203)
369 PF10579 Rapsyn_N: Rapsyn N-te 71.9 4.2 9.1E-05 29.7 2.6 47 568-614 18-65 (80)
370 KOG2063 Vacuolar assembly/sort 71.7 1.6E+02 0.0035 33.5 15.6 126 173-307 506-638 (877)
371 PF12862 Apc5: Anaphase-promot 71.1 12 0.00025 29.0 5.3 52 635-686 9-69 (94)
372 PRK11619 lytic murein transgly 70.9 1.7E+02 0.0038 32.3 41.0 74 342-415 295-373 (644)
373 COG4976 Predicted methyltransf 70.7 7.9 0.00017 35.0 4.6 54 636-689 7-60 (287)
374 KOG1550 Extracellular protein 70.6 1.6E+02 0.0036 31.9 20.1 113 373-486 228-359 (552)
375 PF10579 Rapsyn_N: Rapsyn N-te 70.1 6.6 0.00014 28.7 3.3 45 636-680 18-65 (80)
376 KOG3364 Membrane protein invol 69.7 22 0.00048 29.3 6.4 70 553-624 29-104 (149)
377 KOG1464 COP9 signalosome, subu 69.2 1E+02 0.0022 28.9 12.7 57 358-414 106-171 (440)
378 KOG2471 TPR repeat-containing 68.4 15 0.00033 37.3 6.5 128 140-277 240-382 (696)
379 PF04190 DUF410: Protein of un 68.2 1.1E+02 0.0025 29.1 14.7 83 488-585 88-170 (260)
380 PF07035 Mic1: Colon cancer-as 67.9 83 0.0018 27.5 14.6 44 415-462 24-67 (167)
381 COG2912 Uncharacterized conser 67.8 19 0.00042 33.9 6.7 80 628-730 185-264 (269)
382 KOG2396 HAT (Half-A-TPR) repea 67.3 1.6E+02 0.0035 30.6 27.6 62 106-167 103-167 (568)
383 KOG3824 Huntingtin interacting 66.3 8.3 0.00018 36.4 4.0 61 603-663 127-189 (472)
384 PRK11619 lytic murein transgly 66.1 2.2E+02 0.0047 31.6 41.7 190 489-690 311-508 (644)
385 PF13934 ELYS: Nuclear pore co 65.1 86 0.0019 29.2 10.5 102 80-185 79-186 (226)
386 PF13170 DUF4003: Protein of u 64.5 1.5E+02 0.0032 29.0 19.0 146 537-682 78-241 (297)
387 COG5159 RPN6 26S proteasome re 64.2 35 0.00077 32.1 7.5 50 528-577 10-66 (421)
388 PF14863 Alkyl_sulf_dimr: Alky 62.3 24 0.00053 29.7 5.7 70 607-679 56-125 (141)
389 COG5159 RPN6 26S proteasome re 61.9 1.4E+02 0.003 28.4 10.7 47 426-472 9-62 (421)
390 PRK10941 hypothetical protein; 61.2 36 0.00078 32.6 7.4 67 596-662 185-253 (269)
391 COG4455 ImpE Protein of avirul 60.9 1.3E+02 0.0029 27.4 11.4 125 524-660 4-141 (273)
392 PF04097 Nic96: Nup93/Nic96; 60.9 2.2E+02 0.0047 31.5 14.3 39 362-400 116-157 (613)
393 PF09670 Cas_Cas02710: CRISPR- 60.2 79 0.0017 32.2 10.2 54 530-584 140-197 (379)
394 TIGR02270 conserved hypothetic 58.9 2.2E+02 0.0049 29.3 22.6 19 460-478 257-275 (410)
395 KOG4642 Chaperone-dependent E3 58.2 86 0.0019 29.0 8.6 84 499-584 19-106 (284)
396 TIGR03504 FimV_Cterm FimV C-te 58.2 24 0.00052 22.6 3.9 24 426-449 5-28 (44)
397 PF11768 DUF3312: Protein of u 57.8 1E+02 0.0022 32.5 10.3 56 495-550 413-473 (545)
398 TIGR02270 conserved hypothetic 56.6 2.5E+02 0.0053 29.1 22.8 22 200-221 98-119 (410)
399 PHA02537 M terminase endonucle 56.5 89 0.0019 29.0 8.7 105 531-658 93-212 (230)
400 KOG0686 COP9 signalosome, subu 55.8 2.3E+02 0.0051 28.6 13.0 24 360-383 153-176 (466)
401 PF06957 COPI_C: Coatomer (COP 55.7 53 0.0011 33.6 7.8 109 531-657 214-333 (422)
402 KOG0292 Vesicle coat complex C 55.2 58 0.0013 36.1 8.3 157 20-199 625-781 (1202)
403 COG4976 Predicted methyltransf 55.0 20 0.00044 32.5 4.3 56 602-657 5-62 (287)
404 PF04090 RNA_pol_I_TF: RNA pol 54.7 1.6E+02 0.0034 26.6 9.7 28 523-550 43-70 (199)
405 KOG2471 TPR repeat-containing 54.6 2.2E+02 0.0047 29.6 11.5 66 632-697 214-282 (696)
406 PF07163 Pex26: Pex26 protein; 54.3 93 0.002 29.6 8.4 88 528-618 90-184 (309)
407 KOG2758 Translation initiation 54.2 2.2E+02 0.0047 27.7 13.5 158 477-652 22-195 (432)
408 KOG0686 COP9 signalosome, subu 54.1 2.5E+02 0.0054 28.4 11.7 92 491-584 151-257 (466)
409 cd08819 CARD_MDA5_2 Caspase ac 53.2 43 0.00094 25.2 5.0 35 246-281 49-83 (88)
410 PF14561 TPR_20: Tetratricopep 52.3 1E+02 0.0023 23.5 7.5 62 623-684 21-85 (90)
411 COG1747 Uncharacterized N-term 51.9 3.1E+02 0.0067 28.8 19.9 129 522-657 100-238 (711)
412 PF15469 Sec5: Exocyst complex 51.7 94 0.002 27.7 8.2 110 532-663 68-178 (182)
413 PF00244 14-3-3: 14-3-3 protei 50.4 77 0.0017 29.7 7.7 185 527-726 7-223 (236)
414 KOG0545 Aryl-hydrocarbon recep 50.0 49 0.0011 30.6 5.8 91 81-171 182-295 (329)
415 KOG1550 Extracellular protein 49.5 3.8E+02 0.0082 29.2 20.7 94 357-450 288-394 (552)
416 cd08819 CARD_MDA5_2 Caspase ac 49.5 65 0.0014 24.3 5.4 34 371-405 50-83 (88)
417 PF10345 Cohesin_load: Cohesin 48.7 4.1E+02 0.009 29.4 29.4 18 634-651 587-604 (608)
418 KOG4507 Uncharacterized conser 48.5 1.1E+02 0.0024 32.3 8.7 133 553-688 568-706 (886)
419 PF10255 Paf67: RNA polymerase 48.3 48 0.001 33.7 6.2 53 238-290 127-190 (404)
420 PF10516 SHNi-TPR: SHNi-TPR; 47.5 32 0.00069 21.2 3.1 28 659-686 2-29 (38)
421 KOG0376 Serine-threonine phosp 47.4 59 0.0013 33.4 6.6 101 530-635 13-116 (476)
422 PF11846 DUF3366: Domain of un 47.3 53 0.0011 29.6 6.0 37 619-655 139-175 (193)
423 TIGR02414 pepN_proteo aminopep 45.8 4.5E+02 0.0097 30.5 13.9 102 578-679 725-835 (863)
424 KOG2422 Uncharacterized conser 45.3 2.4E+02 0.0053 30.0 10.5 51 634-684 352-404 (665)
425 COG0790 FOG: TPR repeat, SEL1 44.5 3.1E+02 0.0066 26.7 16.3 77 610-689 173-268 (292)
426 PF10366 Vps39_1: Vacuolar sor 44.2 89 0.0019 24.9 6.0 40 505-549 28-67 (108)
427 cd00280 TRFH Telomeric Repeat 44.0 69 0.0015 28.2 5.6 36 631-667 118-153 (200)
428 PF08424 NRDE-2: NRDE-2, neces 43.9 3.4E+02 0.0073 27.0 12.2 113 537-654 47-184 (321)
429 PF11663 Toxin_YhaV: Toxin wit 43.0 30 0.00064 28.5 3.1 34 531-566 105-138 (140)
430 KOG0292 Vesicle coat complex C 42.9 41 0.00088 37.2 5.0 72 600-682 651-722 (1202)
431 KOG4077 Cytochrome c oxidase, 42.7 1E+02 0.0023 25.1 5.9 47 539-585 67-113 (149)
432 PF12968 DUF3856: Domain of Un 42.6 91 0.002 25.2 5.6 55 630-684 61-126 (144)
433 KOG4570 Uncharacterized conser 42.4 1.4E+02 0.003 28.9 7.7 48 435-482 115-162 (418)
434 COG4941 Predicted RNA polymera 42.3 3.5E+02 0.0076 26.7 10.8 120 536-660 271-401 (415)
435 COG3947 Response regulator con 42.2 67 0.0015 30.6 5.7 53 496-548 285-340 (361)
436 PRK14015 pepN aminopeptidase N 42.1 5.4E+02 0.012 29.9 14.0 103 578-680 735-846 (875)
437 PF10255 Paf67: RNA polymerase 41.8 1.3E+02 0.0028 30.8 8.1 29 386-414 162-190 (404)
438 PF07163 Pex26: Pex26 protein; 39.2 2.8E+02 0.006 26.6 9.0 21 646-666 266-286 (309)
439 PRK12356 glutaminase; Reviewed 38.8 3.9E+02 0.0086 26.3 10.7 23 407-429 85-107 (319)
440 KOG2659 LisH motif-containing 38.1 1.7E+02 0.0037 27.0 7.4 19 529-547 72-90 (228)
441 PF12069 DUF3549: Protein of u 38.1 4.2E+02 0.009 26.4 11.7 86 496-584 172-258 (340)
442 KOG1498 26S proteasome regulat 37.6 4.5E+02 0.0097 26.6 18.2 198 487-713 49-267 (439)
443 PF11846 DUF3366: Domain of un 36.9 73 0.0016 28.7 5.3 32 553-584 141-172 (193)
444 cd02679 MIT_spastin MIT: domai 36.9 25 0.00055 26.0 1.8 48 636-686 20-67 (79)
445 KOG2581 26S proteasome regulat 36.9 4.7E+02 0.01 26.6 12.9 122 535-656 140-279 (493)
446 PF12862 Apc5: Anaphase-promot 34.8 1.1E+02 0.0025 23.4 5.3 26 630-655 47-72 (94)
447 PF13762 MNE1: Mitochondrial s 34.6 2.9E+02 0.0063 23.5 9.2 48 556-604 79-127 (145)
448 PRK13184 pknD serine/threonine 34.3 8.2E+02 0.018 28.7 20.6 84 22-105 482-580 (932)
449 KOG1308 Hsp70-interacting prot 34.1 40 0.00086 32.9 3.0 47 535-582 128-174 (377)
450 COG0790 FOG: TPR repeat, SEL1 33.8 4.5E+02 0.0098 25.5 19.9 19 435-453 128-146 (292)
451 COG2256 MGS1 ATPase related to 33.5 5.4E+02 0.012 26.3 13.6 53 417-469 243-298 (436)
452 COG5108 RPO41 Mitochondrial DN 32.7 1.5E+02 0.0033 31.9 7.0 24 526-549 33-56 (1117)
453 PRK10564 maltose regulon perip 31.6 92 0.002 30.0 4.9 38 423-460 260-297 (303)
454 PF02184 HAT: HAT (Half-A-TPR) 31.3 1E+02 0.0022 18.2 3.2 26 639-665 2-27 (32)
455 PF13762 MNE1: Mitochondrial s 31.2 3.3E+02 0.0072 23.2 8.0 78 492-569 41-128 (145)
456 PF13934 ELYS: Nuclear pore co 31.0 4.4E+02 0.0096 24.5 14.8 105 524-637 79-185 (226)
457 COG5108 RPO41 Mitochondrial DN 31.0 3.5E+02 0.0077 29.3 9.2 68 362-429 33-112 (1117)
458 KOG4077 Cytochrome c oxidase, 30.3 2.1E+02 0.0046 23.4 5.9 54 610-663 70-123 (149)
459 PF10366 Vps39_1: Vacuolar sor 29.8 2E+02 0.0043 23.0 5.9 27 173-199 41-67 (108)
460 PRK10564 maltose regulon perip 29.4 1.1E+02 0.0023 29.6 4.9 40 524-563 260-299 (303)
461 COG5071 RPN5 26S proteasome re 28.8 4E+02 0.0087 25.7 8.3 179 447-632 44-256 (439)
462 PF08311 Mad3_BUB1_I: Mad3/BUB 27.8 2.6E+02 0.0057 23.0 6.6 41 474-514 82-123 (126)
463 KOG4521 Nuclear pore complex, 27.7 9.7E+02 0.021 28.4 12.3 107 495-609 925-1071(1480)
464 PRK14700 recombination factor 27.6 5.9E+02 0.013 24.9 14.7 70 417-486 120-197 (300)
465 COG2909 MalT ATP-dependent tra 27.4 9.8E+02 0.021 27.4 22.4 214 365-581 423-684 (894)
466 PF14689 SPOB_a: Sensor_kinase 27.3 99 0.0021 21.6 3.4 24 526-549 28-51 (62)
467 PF08311 Mad3_BUB1_I: Mad3/BUB 27.3 3.6E+02 0.0077 22.3 7.9 43 539-581 81-124 (126)
468 PF11817 Foie-gras_1: Foie gra 27.0 2.4E+02 0.0053 26.6 7.2 22 362-383 183-204 (247)
469 KOG0991 Replication factor C, 26.8 5.3E+02 0.011 24.1 9.9 47 510-557 228-274 (333)
470 TIGR02710 CRISPR-associated pr 26.5 4.6E+02 0.0099 26.7 9.0 53 529-581 138-196 (380)
471 PF04781 DUF627: Protein of un 26.0 2.5E+02 0.0055 22.5 5.7 21 529-549 4-24 (111)
472 KOG0403 Neoplastic transformat 25.9 7.6E+02 0.016 25.6 19.0 70 331-400 514-586 (645)
473 PRK07914 hypothetical protein; 25.7 6.6E+02 0.014 24.9 10.8 23 533-555 207-229 (320)
474 cd08326 CARD_CASP9 Caspase act 25.4 1.7E+02 0.0037 22.0 4.5 37 369-405 42-78 (84)
475 COG5191 Uncharacterized conser 25.2 1E+02 0.0022 29.7 4.0 76 591-666 106-184 (435)
476 cd08326 CARD_CASP9 Caspase act 24.9 2.4E+02 0.0052 21.3 5.3 59 317-375 21-79 (84)
477 PF15015 NYD-SP12_N: Spermatog 24.9 1.1E+02 0.0024 30.8 4.4 46 633-678 237-282 (569)
478 KOG0551 Hsp90 co-chaperone CNS 24.1 2.2E+02 0.0048 27.9 6.0 84 496-581 87-178 (390)
479 PF05053 Menin: Menin; InterP 23.9 2.1E+02 0.0044 30.4 6.1 22 656-677 405-426 (618)
480 PF11123 DNA_Packaging_2: DNA 23.9 1.5E+02 0.0033 21.4 3.6 31 505-535 12-45 (82)
481 PF04190 DUF410: Protein of un 23.6 6.5E+02 0.014 24.0 18.6 83 355-449 88-170 (260)
482 KOG4279 Serine/threonine prote 23.5 1.1E+03 0.023 26.5 11.8 174 357-557 201-400 (1226)
483 KOG1524 WD40 repeat-containing 23.3 3.6E+02 0.0078 28.3 7.5 60 592-654 573-632 (737)
484 PRK11639 zinc uptake transcrip 23.3 2.6E+02 0.0057 24.5 6.1 47 526-572 30-76 (169)
485 KOG2422 Uncharacterized conser 23.1 9.7E+02 0.021 25.9 12.2 12 659-670 484-495 (665)
486 PRK00971 glutaminase; Provisio 23.1 7.3E+02 0.016 24.4 11.2 23 407-429 80-102 (307)
487 PF04090 RNA_pol_I_TF: RNA pol 23.1 5.3E+02 0.011 23.4 7.9 90 626-715 43-133 (199)
488 cd00280 TRFH Telomeric Repeat 23.0 2.7E+02 0.0059 24.7 5.8 29 599-627 118-146 (200)
489 COG1747 Uncharacterized N-term 23.0 9.2E+02 0.02 25.6 19.9 161 417-584 63-233 (711)
490 PF07575 Nucleopor_Nup85: Nup8 22.9 1E+03 0.022 26.0 14.9 42 441-482 391-432 (566)
491 PRK12357 glutaminase; Reviewed 22.9 7.5E+02 0.016 24.5 11.1 22 407-428 89-110 (326)
492 KOG2168 Cullins [Cell cycle co 22.6 1.2E+03 0.025 26.6 12.8 17 603-619 718-734 (835)
493 PF14649 Spatacsin_C: Spatacsi 22.5 7.4E+02 0.016 24.3 9.9 119 542-665 6-128 (296)
494 PF02607 B12-binding_2: B12 bi 22.4 2.5E+02 0.0055 20.4 5.2 40 431-470 12-51 (79)
495 COG4259 Uncharacterized protei 21.8 3.4E+02 0.0073 21.2 5.3 31 655-685 69-99 (121)
496 PRK13342 recombination factor 21.6 9.2E+02 0.02 25.0 15.2 167 435-617 152-330 (413)
497 PF07575 Nucleopor_Nup85: Nup8 21.6 1.1E+03 0.023 25.9 17.7 183 523-727 374-562 (566)
498 COG5191 Uncharacterized conser 21.5 1.1E+02 0.0025 29.4 3.6 80 552-632 102-184 (435)
499 TIGR03814 Gln_ase glutaminase 21.2 7.8E+02 0.017 24.1 10.8 22 407-428 73-94 (300)
500 KOG2908 26S proteasome regulat 21.2 6.5E+02 0.014 25.0 8.4 90 523-613 77-178 (380)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.2e-97 Score=829.85 Aligned_cols=693 Identities=30% Similarity=0.576 Sum_probs=599.4
Q ss_pred CccccchHHHHHHHccCChhHHHHHHhhccC----CCccchHHHHHHHHcCCChhHHHHHHhhCCC----CCcchHHHHH
Q 004644 13 SYVFNQNKKITQLGKSGRVEEAIKIFSQMSQ----KNTVTYNSMISAYAKNGRVNDARKLFEQMPQ----RNLVSWNSMI 84 (740)
Q Consensus 13 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~ 84 (740)
++...++.++..|++.|++++|..+|+.+.. ++..++..++..+.+.+.++.|..++..+.+ ++...++.++
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li 128 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128 (857)
T ss_pred cchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHH
Confidence 3444566777777777777777777777653 5556677777777777777777777765542 4555667777
Q ss_pred HHHhcCCChHHHHHHHHhccCCCcccHHHHHHHHHcCCChHHHHHHHhhC---CCCCChhhHHHHHHHHHhcCChhhHHH
Q 004644 85 AGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL---PNKEDTACWNAMVAGYAKIGNYNEAKK 161 (740)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~ 161 (740)
..|.+.|+++.|..+|++|.+||..+|+.++.+|.+.|++++|.++|+.| +..|+..+|+.++..+.+.++++.+.+
T Consensus 129 ~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~ 208 (857)
T PLN03077 129 SMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE 208 (857)
T ss_pred HHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHH
Confidence 77777777777777777777777777777777777777777777777776 456777777777777777777777777
Q ss_pred HHhcCC----CCCcccHHHHHHHHHhCCChHHHHHHHHhcccCCcchHHHHHHHHhcCCChHHHHHHhcccC----CCch
Q 004644 162 LLDAMP----SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNV 233 (740)
Q Consensus 162 ~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~ 233 (740)
++..+. .+|+.+++.++.+|.+.|++++|.++|++|.++|..+|+.++.+|.+.|++++|.++|.++. .||.
T Consensus 209 ~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~ 288 (857)
T PLN03077 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL 288 (857)
T ss_pred HHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh
Confidence 766654 46777777777777777777777777777777777777777777777777777777777764 5677
Q ss_pred hHHHHHHHHHHhcCChHHHHHHhccCC----CCCcchHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHhhhC
Q 004644 234 VSWVTMLSGYARNGRMLEARRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIA 309 (740)
Q Consensus 234 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 309 (740)
.+|+.++.++.+.|+++.|.+++..+. .+|..+|+.|+.+|++.|++++|.++|++|.+||..+|+.++.+|.+.|
T Consensus 289 ~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g 368 (857)
T PLN03077 289 MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNG 368 (857)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCC
Confidence 777777777777777777777776664 4677777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHhhCCCCchhHHHHHHHHHHhcCChhHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHhccc----
Q 004644 310 KLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN---- 385 (740)
Q Consensus 310 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 385 (740)
++++|..+|++|...++ .||..+|+.++.+|++.|++++|.++++.+.+
T Consensus 369 ~~~~A~~lf~~M~~~g~---------------------------~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~ 421 (857)
T PLN03077 369 LPDKALETYALMEQDNV---------------------------SPDEITIASVLSACACLGDLDVGVKLHELAERKGLI 421 (857)
T ss_pred CHHHHHHHHHHHHHhCC---------------------------CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCC
Confidence 77777777777655554 67999999999999999999999999999964
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhhCCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 004644 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465 (740)
Q Consensus 386 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~ 465 (740)
++..++++|+.+|.++|++++|.++|++|. .+|.++|+.+|.+|.++|+.++|+.+|++|.. +++||..||.+++.+|
T Consensus 422 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~ 499 (857)
T PLN03077 422 SYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSAC 499 (857)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHH
Confidence 788999999999999999999999999996 68999999999999999999999999999975 6999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 004644 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFE 545 (740)
Q Consensus 466 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 545 (740)
++.|+++.++++|..+.+.|+.++..++|+|+++|+|+|++++|.++|+.+ ++|..+||+||.+|+++|+.++|+++|+
T Consensus 500 ~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~ 578 (857)
T PLN03077 500 ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFN 578 (857)
T ss_pred hhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhCCCCCCHH
Q 004644 546 EMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAG 625 (740)
Q Consensus 546 ~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~ 625 (740)
+|.+.|+.||.+||+.++.+|++.|++++|+++|+.|.+.+++.|+..||++|+++|++.|++++|.+++++|+.+||..
T Consensus 579 ~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~ 658 (857)
T PLN03077 579 RMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPA 658 (857)
T ss_pred HHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCcccEEEEcCEEE
Q 004644 626 IWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705 (740)
Q Consensus 626 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 705 (740)
+|++|+.+|+.+|+.+.|+.+.+++++++|++++.|+.|+++|+..|+|++|.++++.|+++|++|+||+||||+++++|
T Consensus 659 ~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~ 738 (857)
T PLN03077 659 VWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVH 738 (857)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHHhhcCC
Q 004644 706 TFLSGDPKQCRTAEICNTLKTLAAQIRNTP 735 (740)
Q Consensus 706 ~f~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 735 (740)
.|++||++||++++||.+|+.|..+|++.+
T Consensus 739 ~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g 768 (857)
T PLN03077 739 AFLTDDESHPQIKEINTVLEGFYEKMKASG 768 (857)
T ss_pred EEecCCCCCcchHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999998764
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-76 Score=650.02 Aligned_cols=508 Identities=33% Similarity=0.601 Sum_probs=448.1
Q ss_pred CCcccHHHHHHHHHhCCChHHHHHHHHhccc-----CCcchHHHHHHHHhcCCChHHHHHHhcccC----CCchhHHHHH
Q 004644 169 KNIVSWNSMLSGYTKNGEMHLASKFFEAMEE-----RDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQNVVSWVTM 239 (740)
Q Consensus 169 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l 239 (740)
++..+|+.++.++.+.|++++|+++|+.|.. ||..+|+.++.++.+.++++.+.+++..+. .+|..+++.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 4556788888888888888888888887753 566777777777777777777777777664 5788888999
Q ss_pred HHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCCHHHHHHHHhhCC----CCChhhHHHHHHHHhhhCCHHHHH
Q 004644 240 LSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEAR 315 (740)
Q Consensus 240 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~ 315 (740)
+.+|++.|++++|.++|++|..||.++||.++.+|++.|++++|+++|++|. .|+..+|..++.+|.+.|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 9999999999999999999988888999999999999999999999988886 367778888888888877777777
Q ss_pred HHHhhCCCCchhHHHHHHHHHHhcCChhHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHH
Q 004644 316 RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMI 395 (740)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 395 (740)
+++..+.+.+. .+|..+++.++++|+++|++++|.++|++|.++|
T Consensus 245 ~l~~~~~~~g~---------------------------~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~-------- 289 (697)
T PLN03081 245 QLHCCVLKTGV---------------------------VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT-------- 289 (697)
T ss_pred HHHHHHHHhCC---------------------------CccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCC--------
Confidence 77665544433 3466666666666666666666666666555544
Q ss_pred HHHHccCCHHHHHHHHHhhCCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHH
Q 004644 396 AGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGR 475 (740)
Q Consensus 396 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~ 475 (740)
.++||.++.+|.+.|+.++|+.+|++|...|+.||..||++++.+|++.|.++.|.
T Consensus 290 ------------------------~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 345 (697)
T PLN03081 290 ------------------------TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK 345 (697)
T ss_pred ------------------------hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHH
Confidence 45555555555556666666666666678999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 004644 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555 (740)
Q Consensus 476 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 555 (740)
++|..+.+.|+.++..++++|+++|+++|++++|.++|++|..+|..+||+||.+|+++|+.++|+++|++|.+.|+.||
T Consensus 346 ~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 346 QAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004644 556 PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACR 635 (740)
Q Consensus 556 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 635 (740)
.+||+.++.+|++.|++++|.++|+.|.+.+++.|+..||++|+++|++.|++++|.+++++++..|+..+|++|+.+|.
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~ 505 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACR 505 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCcccEEEEcCEEEEEecCCCCCC
Q 004644 636 MHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQC 715 (740)
Q Consensus 636 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~ 715 (740)
.+|+++.|+.+++++++++|+++..|..|+++|++.|+|++|.++++.|+++|++|.||+|||++++++|.|++||++||
T Consensus 506 ~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~ 585 (697)
T PLN03081 506 IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHP 585 (697)
T ss_pred HcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhhcCC
Q 004644 716 RTAEICNTLKTLAAQIRNTP 735 (740)
Q Consensus 716 ~~~~~~~~l~~l~~~~~~~~ 735 (740)
++.+||++|+.|..+|++.+
T Consensus 586 ~~~~i~~~l~~l~~~~~~~g 605 (697)
T PLN03081 586 QSREIYQKLDELMKEISEYG 605 (697)
T ss_pred cHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999998854
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.9e-70 Score=612.17 Aligned_cols=605 Identities=21% Similarity=0.328 Sum_probs=478.5
Q ss_pred CCCccccchHHHHHHHccCChhHHHHHHhhcc----CCCccchHHHHHHHHcCCChhHHHHHHhhCCCCCcchHHHHHHH
Q 004644 11 KGSYVFNQNKKITQLGKSGRVEEAIKIFSQMS----QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAG 86 (740)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 86 (740)
.+|+...+..++..+.+.+.++.|..++..+. .++...++.++..|.+.|+++.|.++|++|.++|..+|+.++.+
T Consensus 82 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~ 161 (857)
T PLN03077 82 VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGG 161 (857)
T ss_pred CCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHH
Confidence 46777788899999999999999999998765 35677889999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHhcc----CCCcccHHHHHHHHHcCCChHHHHHHHhhC---CCCCChhhHHHHHHHHHhcCChhhH
Q 004644 87 YLHNDKVKEARELFDKMF----RPDLFSWALMITCYTRKGELEKARELFDLL---PNKEDTACWNAMVAGYAKIGNYNEA 159 (740)
Q Consensus 87 ~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A 159 (740)
|.+.|++++|+.+|++|. .||..||+.++.+|...+++..+.+++..+ +..+++.+++.|+.+|+++|++++|
T Consensus 162 ~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 241 (857)
T PLN03077 162 YAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSA 241 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHH
Confidence 999999999999999984 599999999999999999999999999887 6678999999999999999999999
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHhcc----cCCcchHHHHHHHHhcCCChHHHHHHhcccC----CC
Q 004644 160 KKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAME----ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP----EQ 231 (740)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~ 231 (740)
.++|++|+.+|.++||+++.+|.+.|++++|+++|.+|. .||..||+.++.++.+.|+++.|.+++..+. .+
T Consensus 242 ~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~ 321 (857)
T PLN03077 242 RLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321 (857)
T ss_pred HHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc
Confidence 999999999999999999999999999999999999997 4899999999999999999999999998876 78
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCCHHHHHHHHhhCC----CCChhhHHHHHHHHhh
Q 004644 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVR 307 (740)
Q Consensus 232 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~ 307 (740)
|..+|+.|+.+|+++|++++|.++|++|..+|+.+|+.++.+|.+.|++++|+++|++|. .||..||+.++.+|++
T Consensus 322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~ 401 (857)
T PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC 401 (857)
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999996 5999999999999999
Q ss_pred hCCHHHHHHHHhhCCCCchhHHHHHHHHHHhcCChhHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcccCC
Q 004644 308 IAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD 387 (740)
Q Consensus 308 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 387 (740)
.|+++.|.++++.+.+.|. .++..+|+.|+++|+++|++++|.++|++|.++|
T Consensus 402 ~g~~~~a~~l~~~~~~~g~---------------------------~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d 454 (857)
T PLN03077 402 LGDLDVGVKLHELAERKGL---------------------------ISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD 454 (857)
T ss_pred cchHHHHHHHHHHHHHhCC---------------------------CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 9999999999999876654 3455666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhh--CCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 004644 388 IVTWNTMIAGYAQIRQMDDAVKIFEEM--GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465 (740)
Q Consensus 388 ~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~ 465 (740)
..+|++++.+|.+.|+.++|..+|++| ...||..+|+.++.+|.+.|..+.+.+++..+.+.|+.+|..++++++..|
T Consensus 455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 455 VISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 666666666666666666666666666 335666666666666666666666666666666666666666666666666
Q ss_pred hhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccC----CCCcchHHHHHHHHHhcCChHHHH
Q 004644 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD----PVDVISWNSLIAGYAINGNATEAI 541 (740)
Q Consensus 466 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~ 541 (740)
++.|+++.|..++..+ .+|..+||+++.+|++.|+.++|.++|++|. .||..+|+.++.+|.+.|++++|.
T Consensus 535 ~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~ 609 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609 (857)
T ss_pred HHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHH
Confidence 6666666666665554 4566666666666666666666666666554 456666666666666666666666
Q ss_pred HHHHHHH-HCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhC-C
Q 004644 542 KLFEEMV-MEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM-K 619 (740)
Q Consensus 542 ~~~~~m~-~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 619 (740)
++|+.|. ..|+.|+..+|+.++.++.+.|++++|.+++++| +++|+..+|++|+.+|...|+.+.+....+.+ .
T Consensus 610 ~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~ 685 (857)
T PLN03077 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM----PITPDPAVWGALLNACRIHRHVELGELAAQHIFE 685 (857)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 6666666 4566666666666666666666666666666665 35566666666666666666666555444333 2
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004644 620 IKPN-AGIWGTLLGACRMHQNIKLGRIAVEKLS 651 (740)
Q Consensus 620 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 651 (740)
..|+ ...|..|.+.|...|++++|.++.+.+.
T Consensus 686 l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 686 LDPNSVGYYILLCNLYADAGKWDEVARVRKTMR 718 (857)
T ss_pred hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 3443 3345555556666666666666665554
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-58 Score=508.09 Aligned_cols=513 Identities=17% Similarity=0.301 Sum_probs=422.1
Q ss_pred CCccchHHHHHHHHcCCChhHHHHHHhhCCCCCcc-----hHHHHHHHHhcCCChHHHHHHHHhccCCCcccHHHHHHHH
Q 004644 44 KNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV-----SWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCY 118 (740)
Q Consensus 44 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 118 (740)
++...+..+...+++.|++++|.++|++|.+++.. .+..++..|.+.|.+++|+.+|+.|..||..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45556777777778888888888888888764433 3455667788888888888888888888888888888888
Q ss_pred HcCCChHHHHHHHhhC---CCCCChhhHHHHHHHHHhcCChhhHHHHHhcCC----CCCcccHHHHHHHHHhCCChHHHH
Q 004644 119 TRKGELEKARELFDLL---PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP----SKNIVSWNSMLSGYTKNGEMHLAS 191 (740)
Q Consensus 119 ~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~ 191 (740)
++.|+++.|.++|+.| +..++..+|+.|+.+|+++|++++|.++|++|. .||..+|+.+|.+|++.|++++|+
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 8888888888888877 456778888888888888888888888888876 477788888888888888888888
Q ss_pred HHHHhcccCCcchHHHHHHHHhcCCChHHHHHHhcccCCCchhHHHHHHHHHHhcCChHHHHHHhccCC------CCCcc
Q 004644 192 KFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP------IRNVV 265 (740)
Q Consensus 192 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~ 265 (740)
++|++|.+.+. .||..+|+.++.+|++.|++++|.++|++|. .||..
T Consensus 528 ~lf~~M~~~Gv---------------------------~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v 580 (1060)
T PLN03218 528 GAYGIMRSKNV---------------------------KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI 580 (1060)
T ss_pred HHHHHHHHcCC---------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH
Confidence 88888764332 5677778888888888888888888887773 46788
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHhhCCC----CChhhHHHHHHHHhhhCCHHHHHHHHhhCCCCchhHHHHHHHHHHhcCC
Q 004644 266 AWNAMIAAYVQRGQIEEAARLFIEMPE----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKR 341 (740)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 341 (740)
+|+.++.+|++.|++++|.++|+.|.+ |+..+|+.++.+|++.|++++|..+|++|...++
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv--------------- 645 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV--------------- 645 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------------
Confidence 899999999999999999999988873 6778999999999999999999999998877665
Q ss_pred hhHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHhccc----CCHHHHHHHHHHHHccCCHHHHHHHHHhh---
Q 004644 342 MDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN----KDIVTWNTMIAGYAQIRQMDDAVKIFEEM--- 414 (740)
Q Consensus 342 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--- 414 (740)
.+|..+|+.++.+|++.|++++|.++|++|.+ ||..+|++++.+|++.|++++|.++|++|
T Consensus 646 ------------~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~ 713 (1060)
T PLN03218 646 ------------KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI 713 (1060)
T ss_pred ------------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 57889999999999999999999999999964 88999999999999999999999999998
Q ss_pred CCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHH
Q 004644 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN 494 (740)
Q Consensus 415 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 494 (740)
+..||..+|+.||.+|++.|+.++|+++|++|...|+.||..||..++.+|++.|+++.|.+++..+.+.|+.|+..+|+
T Consensus 714 g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tyn 793 (1060)
T PLN03218 714 KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCR 793 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh----hccCCHHHHHHHhcccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccc
Q 004644 495 SLITMY----AKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570 (740)
Q Consensus 495 ~l~~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g 570 (740)
+++.++ .+++...++...|+.+...+...|+ ++|+.+|++|++.|+.||..||+.++.++...+
T Consensus 794 sLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~------------~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~ 861 (1060)
T PLN03218 794 CITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT------------SWALMVYRETISAGTLPTMEVLSQVLGCLQLPH 861 (1060)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhccccccccchH------------HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccc
Confidence 999874 3444444444445444344444444 469999999999999999999999998777788
Q ss_pred hHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhC---CCCCCHH
Q 004644 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM---KIKPNAG 625 (740)
Q Consensus 571 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~ 625 (740)
....+..+++.|... +..|+..+|+++++.+++. .++|..+++.| ++.|+..
T Consensus 862 ~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 862 DATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred cHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 888777777776543 5556677899999988532 36899999887 4556553
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-57 Score=498.00 Aligned_cols=493 Identities=19% Similarity=0.283 Sum_probs=415.7
Q ss_pred CCcccHHHHHHHHHhCCChHHHHHHHHhcccCCc-----chHHHHHHHHhcCCChHHHHHHhcccCCCchhHHHHHHHHH
Q 004644 169 KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDV-----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGY 243 (740)
Q Consensus 169 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 243 (740)
++...|..++..+.+.|++++|+++|++|.+.+. .++..++..|.+.|..++|..+++.+..++..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4555677777777778888888888888775443 33445566677777777777777777777777888888888
Q ss_pred HhcCChHHHHHHhccCC----CCCcchHHHHHHHHHHcCCHHHHHHHHhhCC----CCChhhHHHHHHHHhhhCCHHHHH
Q 004644 244 ARNGRMLEARRLFDQMP----IRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAKLDEAR 315 (740)
Q Consensus 244 ~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~ 315 (740)
++.|+++.|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 88888888888887775 4677788888888888888888888888887 478888888888888888888888
Q ss_pred HHHhhCCCCchhHHHHHHHHHHhcCChhHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcc------cCCHH
Q 004644 316 RLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV------NKDIV 389 (740)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~ 389 (740)
.+|+.|...++ .+|..+|+.++.+|++.|++++|.++|++|. .||..
T Consensus 528 ~lf~~M~~~Gv---------------------------~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v 580 (1060)
T PLN03218 528 GAYGIMRSKNV---------------------------KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI 580 (1060)
T ss_pred HHHHHHHHcCC---------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH
Confidence 88887765554 5788999999999999999999999999984 48899
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhh---CCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 004644 390 TWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACA 466 (740)
Q Consensus 390 ~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~ 466 (740)
+|++++.+|++.|++++|.++|+.| +..|+..+|+.+|.+|++.|++++|..+|++|...|+.||..||+.++.+|+
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999998 5578889999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccC----CCCcchHHHHHHHHHhcCChHHHHH
Q 004644 467 HLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD----PVDVISWNSLIAGYAINGNATEAIK 542 (740)
Q Consensus 467 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~ 542 (740)
+.|+++.|.+++..|.+.|+.|+..+|++|+++|+++|++++|.++|++|. .||..+||+||.+|++.|++++|++
T Consensus 661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAle 740 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALE 740 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999884 7899999999999999999999999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhh----cc-------------
Q 004644 543 LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLS----RA------------- 605 (740)
Q Consensus 543 ~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~------------- 605 (740)
+|++|...|+.||..||+.++.+|++.|++++|.++|..|.+. |+.|+..+|++++.++. ++
T Consensus 741 lf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g 819 (1060)
T PLN03218 741 VLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSG 819 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc
Confidence 9999999999999999999999999999999999999999886 99999999999987643 22
Q ss_pred ------CChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH-ccCCCCCcchHHHHHHHHhcCCc-
Q 004644 606 ------GRLDEAFEMVKGM---KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLS-ELEPQKTSCYALLSNMHAEAGRW- 674 (740)
Q Consensus 606 ------g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~- 674 (740)
+..++|..+|++| ++.||..+|++++.++...+..+.+...++.+. .-.+.+...|..|.+.+ |++
T Consensus 820 ~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~ 896 (1060)
T PLN03218 820 RPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYD 896 (1060)
T ss_pred ccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccCh
Confidence 2346789999888 588999999999977777788888887776643 22344456677777655 555
Q ss_pred hHHHHHHHHHhhCCCccC
Q 004644 675 DEVEKVRVSMEGSGAQKQ 692 (740)
Q Consensus 675 ~~a~~~~~~~~~~~~~~~ 692 (740)
++|..+++.|...|+...
T Consensus 897 ~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 897 PRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 589999999999999743
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4e-56 Score=488.07 Aligned_cols=455 Identities=23% Similarity=0.359 Sum_probs=386.3
Q ss_pred CCcchHHHHHHHHhcCCChHHHHHHHHhcc-----CCCcccHHHHHHHHHcCCChHHHHHHHhhC---CCCCChhhHHHH
Q 004644 75 RNLVSWNSMIAGYLHNDKVKEARELFDKMF-----RPDLFSWALMITCYTRKGELEKARELFDLL---PNKEDTACWNAM 146 (740)
Q Consensus 75 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l 146 (740)
.+..+|+.++..+.+.|++++|+.+|+.|. .||..+|+.++.+|.+.++++.|.+++..+ +..++..+++.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 455689999999999999999999999984 378899999999999999999999999988 667899999999
Q ss_pred HHHHHhcCChhhHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHhccc----CCcchHHHHHHHHhcCCChHHHH
Q 004644 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE----RDVVSWNLMLDGYVELDDLDSAW 222 (740)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~ 222 (740)
+.+|.++|++++|.++|++|..||.++|++++.+|.+.|++++|+++|++|.+ |+..++..++.++.+.|+.+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999974 77788888888888888888888
Q ss_pred HHhcccC----CCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCCHHHHHHHHhhCC----CCC
Q 004644 223 KFFQKIP----EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMP----ERN 294 (740)
Q Consensus 223 ~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~ 294 (740)
+++..+. .+|..+++.|+.+|+++|++++|.++|++|.++|+++||.++.+|++.|++++|+++|++|. .||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 8876654 56777888888888888888888888888888888888888888888888888888888774 467
Q ss_pred hhhHHHHHHHHhhhCCHHHHHHHHhhCCCCchhHHHHHHHHHHhcCChhHHHHHHhhcCCCChhhHHHHHHHHHHcCCHH
Q 004644 295 PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMD 374 (740)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 374 (740)
..||+.++.+|++.|.++.|.+++..|.+.+. ++|..+++.|+++|+++|+++
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~---------------------------~~d~~~~~~Li~~y~k~G~~~ 377 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF---------------------------PLDIVANTALVDLYSKWGRME 377 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCC---------------------------CCCeeehHHHHHHHHHCCCHH
Confidence 77777777777777777777776666554443 345555566655555555555
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHccCCHHHHHHHHHhhCCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC
Q 004644 375 EAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454 (740)
Q Consensus 375 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 454 (740)
+|.++|++|.+ +|.++||.||.+|.+.|+.++|+++|++|...|+.||
T Consensus 378 ~A~~vf~~m~~--------------------------------~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 378 DARNVFDRMPR--------------------------------KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHHHHHhCCC--------------------------------CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 55555555543 4566666666667777777777777777779999999
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHH-hCCCCChhHHHHHHHHhhccCCHHHHHHHhcccC-CCCcchHHHHHHHHH
Q 004644 455 HSTLACALSACAHLAALQLGRQIHHLAIK-SGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD-PVDVISWNSLIAGYA 532 (740)
Q Consensus 455 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~ 532 (740)
..||..++.+|++.|.+++|.+++..|.+ .|+.|+..+|+.++++|++.|++++|.++++++. .|+..+|++++.+|.
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~ 505 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACR 505 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999986 6999999999999999999999999999999987 789999999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC
Q 004644 533 INGNATEAIKLFEEMVMEGVAPD-PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL 591 (740)
Q Consensus 533 ~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 591 (740)
.+|+.+.|..+++++.+ +.|+ ..+|..++..|++.|++++|.++++.|.+. |+.+.
T Consensus 506 ~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k~ 562 (697)
T PLN03081 506 IHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSMH 562 (697)
T ss_pred HcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCccC
Confidence 99999999999999975 5665 569999999999999999999999999986 76543
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.5e-42 Score=400.37 Aligned_cols=672 Identities=15% Similarity=0.119 Sum_probs=432.6
Q ss_pred CCCccccchHHHHHHHccCChhHHHHHHhhcc---CCCccchHHHHHHHHcCCChhHHHHHHhhCCC---CCcchHHHHH
Q 004644 11 KGSYVFNQNKKITQLGKSGRVEEAIKIFSQMS---QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ---RNLVSWNSMI 84 (740)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~ 84 (740)
.|.+...+..++..+...|++++|...++++. +.++..+..++..+...|++++|...|+++.. .++..+..++
T Consensus 155 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~ 234 (899)
T TIGR02917 155 DPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALA 234 (899)
T ss_pred CCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 34455667778888888999999999988765 34556777788888888999999998888754 3445677788
Q ss_pred HHHhcCCChHHHHHHHHhccC--C-CcccHHHHHHHHHcCCChHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCChhhH
Q 004644 85 AGYLHNDKVKEARELFDKMFR--P-DLFSWALMITCYTRKGELEKARELFDLL--PNKEDTACWNAMVAGYAKIGNYNEA 159 (740)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A 159 (740)
..+...|++++|...++.+.+ | +...+......+...|++++|...++.+ ..+.....+..++..+...|++++|
T Consensus 235 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A 314 (899)
T TIGR02917 235 TILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQA 314 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHH
Confidence 888888888888888887754 2 2334444455666677888888887776 2233344555666677777777777
Q ss_pred HHHHhcCCC---CCcccHHHHHHHHHhCCChHHHHHHHHhccc---CCcchHHHHHHHHhcCCChHHHHHHhcccC---C
Q 004644 160 KKLLDAMPS---KNIVSWNSMLSGYTKNGEMHLASKFFEAMEE---RDVVSWNLMLDGYVELDDLDSAWKFFQKIP---E 230 (740)
Q Consensus 160 ~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~ 230 (740)
...|+++.+ .+...+..++..+...|++++|...+..+.+ .++..+..++..+.+.|++++|...|+++. +
T Consensus 315 ~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 394 (899)
T TIGR02917 315 YQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP 394 (899)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 777776542 2344566666777777777777777777664 234456666777777777777777777665 4
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHH
Q 004644 231 QNVVSWVTMLSGYARNGRMLEARRLFDQMPI---RNVVAWNAMIAAYVQRGQIEEAARLFIEMPE---RNPVSWTTMIDG 304 (740)
Q Consensus 231 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 304 (740)
.+...+..++..+...|++++|...|+++.. .....+..++..+.+.|++++|+.+++.+.+ +++.++..+...
T Consensus 395 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 474 (899)
T TIGR02917 395 ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAI 474 (899)
T ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 5556666777777777777777777766542 2234455566666777777777777766653 345566666677
Q ss_pred HhhhCCHHHHHHHHhhCCC---CchhHHHHHHHHHHhcCChhHHHHHHhhcC---CCChhhHHHHHHHHHHcCCHHHHHH
Q 004644 305 YVRIAKLDEARRLLDQMPY---KNIAAQTAMISGYVQNKRMDEANQIFDKIG---THDVVCWNVMIKGYAQCGRMDEAIN 378 (740)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~ 378 (740)
+...|++++|...++++.. .+......++..+...|++++|.+.++++. +.+..++..++..+.+.|+.++|..
T Consensus 475 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 554 (899)
T TIGR02917 475 YLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVA 554 (899)
T ss_pred HHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777766542 233445556666667777777777766542 3455566666666667777777777
Q ss_pred HHHhccc---CCHHHHHHHHHHHHccCCHHHHHHHHHhh--CCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 004644 379 LFRQMVN---KDIVTWNTMIAGYAQIRQMDDAVKIFEEM--GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA 453 (740)
Q Consensus 379 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 453 (740)
.|+++.+ .+...+..++..|...|++++|..+++.+ ..+.+...|..++..+...|++++|+..|+++.... +.
T Consensus 555 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 633 (899)
T TIGR02917 555 WLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PD 633 (899)
T ss_pred HHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 7766643 23445556666666667777777666666 223345566666666666777777777666665543 22
Q ss_pred CHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccC---CCCcchHHHHHHH
Q 004644 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAG 530 (740)
Q Consensus 454 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 530 (740)
+...+..+...+...|+++.|...+..+.+.. +.+...+..++..+.+.|++++|.++++.+. +.+...+..++..
T Consensus 634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 712 (899)
T TIGR02917 634 SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDL 712 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHH
Confidence 34445555566666666666666666665542 3345556666666666666666666666554 3445556666666
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHH
Q 004644 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDE 610 (740)
Q Consensus 531 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 610 (740)
+...|++++|++.|+++... .|+..++..+..++...|++++|.+.++.+.+. ...+...+..++..|...|++++
T Consensus 713 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~ 788 (899)
T TIGR02917 713 YLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDK 788 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHH
Confidence 66666666666666666663 344455555666666666666666666666553 11225556666666666666666
Q ss_pred HHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004644 611 AFEMVKGM-KI-KPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688 (740)
Q Consensus 611 A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 688 (740)
|.+.++.+ .. +++..++..+...+...|+ ..|+..+++++++.|+++..+..++.+|...|++++|.++++++.+.+
T Consensus 789 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 789 AIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 66666554 12 2344456666666666666 556666666666666666666666666666666666666666666554
Q ss_pred C
Q 004644 689 A 689 (740)
Q Consensus 689 ~ 689 (740)
+
T Consensus 868 ~ 868 (899)
T TIGR02917 868 P 868 (899)
T ss_pred C
Confidence 4
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.8e-42 Score=399.93 Aligned_cols=670 Identities=14% Similarity=0.073 Sum_probs=497.8
Q ss_pred CCccccchHHHHHHHccCChhHHHHHHhhcc---CCCccchHHHHHHHHcCCChhHHHHHHhhCCC---CCcchHHHHHH
Q 004644 12 GSYVFNQNKKITQLGKSGRVEEAIKIFSQMS---QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ---RNLVSWNSMIA 85 (740)
Q Consensus 12 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 85 (740)
+.....+..+...+.+.|++++|...|+++. +.++..+..++..+...|++++|..+++++.+ .+...+..++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 201 (899)
T TIGR02917 122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGD 201 (899)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 3444566667778888888888888888765 34556777788888888888888888887754 34456777778
Q ss_pred HHhcCCChHHHHHHHHhccC--C-CcccHHHHHHHHHcCCChHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCChhhHH
Q 004644 86 GYLHNDKVKEARELFDKMFR--P-DLFSWALMITCYTRKGELEKARELFDLL--PNKEDTACWNAMVAGYAKIGNYNEAK 160 (740)
Q Consensus 86 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~ 160 (740)
.+...|++++|...|+++.+ | +..++..++..+...|++++|...++.+ ..+.++......+..+...|++++|.
T Consensus 202 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 281 (899)
T TIGR02917 202 LLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDAR 281 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHH
Confidence 88888888888888888754 3 3456677777888888888888888777 33445556666667777888888888
Q ss_pred HHHhcCCCCC---cccHHHHHHHHHhCCChHHHHHHHHhccc--C-CcchHHHHHHHHhcCCChHHHHHHhcccC---CC
Q 004644 161 KLLDAMPSKN---IVSWNSMLSGYTKNGEMHLASKFFEAMEE--R-DVVSWNLMLDGYVELDDLDSAWKFFQKIP---EQ 231 (740)
Q Consensus 161 ~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~ 231 (740)
..|+++.+.+ ...+..++..+...|++++|...|.++.+ | +...+..++..+...|++++|...+..+. +.
T Consensus 282 ~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 361 (899)
T TIGR02917 282 ETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPD 361 (899)
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 8887765432 22445566677788888888888887764 2 34456667777888888888888887765 45
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCCHHHHHHHHhhCCCC---ChhhHHHHHHHH
Q 004644 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPI---RNVVAWNAMIAAYVQRGQIEEAARLFIEMPER---NPVSWTTMIDGY 305 (740)
Q Consensus 232 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~ 305 (740)
++..+..++..+.+.|++++|...|+++.. .+...|..+...+...|++++|++.|+.+.+. +......++..+
T Consensus 362 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 441 (899)
T TIGR02917 362 DPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSY 441 (899)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHH
Confidence 566777888888888888888888877653 34556777777888888888888888877642 234555667777
Q ss_pred hhhCCHHHHHHHHhhCCC---CchhHHHHHHHHHHhcCChhHHHHHHhhc---CCCChhhHHHHHHHHHHcCCHHHHHHH
Q 004644 306 VRIAKLDEARRLLDQMPY---KNIAAQTAMISGYVQNKRMDEANQIFDKI---GTHDVVCWNVMIKGYAQCGRMDEAINL 379 (740)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~ 379 (740)
.+.|++++|..+++.+.. .+...+..++..+...|++++|.+.|++. .+.+...+..++..+...|++++|...
T Consensus 442 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 442 LRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 888888888888887753 34456677788888888888888888764 345666777788888888888888888
Q ss_pred HHhccc---CCHHHHHHHHHHHHccCCHHHHHHHHHhh--CCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC
Q 004644 380 FRQMVN---KDIVTWNTMIAGYAQIRQMDDAVKIFEEM--GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454 (740)
Q Consensus 380 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 454 (740)
|+++++ .+..++..++..+.+.|+.++|...++++ ..+.+...+..++..+...|++++|+.+++.+.... +.+
T Consensus 522 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 600 (899)
T TIGR02917 522 FEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDS 600 (899)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCC
Confidence 888764 35567777888888888888888888877 323455667778888888888888888888876543 445
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccC---CCCcchHHHHHHHH
Q 004644 455 HSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGY 531 (740)
Q Consensus 455 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~ 531 (740)
..++..+...+...|+++.|...+..+.+.. +.+...+..++..|.+.|++++|...|+++. |.+..+|..++..+
T Consensus 601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 679 (899)
T TIGR02917 601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLL 679 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 6677777778888888888888888777654 3455667778888888888888888887654 55667788888888
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHH
Q 004644 532 AINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611 (740)
Q Consensus 532 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 611 (740)
...|++++|..+++.+.+.+ +++...+..+...+...|++++|...|+.+.. ..|+...+..++.++.+.|++++|
T Consensus 680 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 680 LAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHH
Confidence 88888888888888887764 44556677777778888888888888888765 345556777788888888888888
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004644 612 FEMVKGM-KIKP-NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688 (740)
Q Consensus 612 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 688 (740)
.+.++.+ ...| +...+..+...|...|+.+.|+..++++++..|+++..+..+++++...|+ ++|..+++++.+..
T Consensus 756 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 756 VKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 8877665 2233 555677777778888888888888888888888888888888888888888 77888888776544
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=5.7e-30 Score=295.16 Aligned_cols=615 Identities=12% Similarity=0.039 Sum_probs=362.5
Q ss_pred cccchHHHHHHHccCChhHHHHHHhhcc---CCCccchHHHHHHHHcCCChhHHHHHHhhCCCCCcc---h---------
Q 004644 15 VFNQNKKITQLGKSGRVEEAIKIFSQMS---QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV---S--------- 79 (740)
Q Consensus 15 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~--------- 79 (740)
...+...++.....++.+.|.+.++++. +.++.++..++.++.+.|+.++|...+++..+.++. .
T Consensus 28 ~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~ 107 (1157)
T PRK11447 28 QQQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHh
Confidence 3445667888999999999999999875 567888999999999999999999999998763222 1
Q ss_pred -------HHHHHHHHhcCCChHHHHHHHHhccCCCcccH--H--HHHHHHHcCCChHHHHHHHhhC--CCCCChhhHHHH
Q 004644 80 -------WNSMIAGYLHNDKVKEARELFDKMFRPDLFSW--A--LMITCYTRKGELEKARELFDLL--PNKEDTACWNAM 146 (740)
Q Consensus 80 -------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~--~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l 146 (740)
...++..+...|++++|+..|+++++.++... . .........|+.++|++.++++ ..|.++.++..+
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~L 187 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTL 187 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 13345578899999999999999976332221 1 1122233459999999999998 557788899999
Q ss_pred HHHHHhcCChhhHHHHHhcCCCCCcccHH---HHHHHHHhCCChHHHHHHHHhcccCCcchHHHHHHHHhcCCChHHHHH
Q 004644 147 VAGYAKIGNYNEAKKLLDAMPSKNIVSWN---SMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWK 223 (740)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 223 (740)
+.++...|++++|++.|+++......... .........+....+...+.... ..+-.....+.|..
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l-----------~~~p~~~~~~~A~~ 256 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYL-----------QVFSDGDSVAAARS 256 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHH-----------HHCCCchHHHHHHH
Confidence 99999999999999999987542211000 00000111112222222222211 11111111222222
Q ss_pred HhcccC--CCchh-HHHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCCHHHHHHHHhhCCC--CCh
Q 004644 224 FFQKIP--EQNVV-SWVTMLSGYARNGRMLEARRLFDQMPI---RNVVAWNAMIAAYVQRGQIEEAARLFIEMPE--RNP 295 (740)
Q Consensus 224 ~~~~~~--~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~ 295 (740)
.+.... ..++. .....+..+...|++++|+..|++... .+...+..+..++.+.|++++|+..|++..+ |+.
T Consensus 257 ~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~ 336 (1157)
T PRK11447 257 QLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS 336 (1157)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 222211 11111 111234444555555555555554431 2334455555555555555555555555442 111
Q ss_pred ---hhH------------HHHHHHHhhhCCHHHHHHHHhhCCCC---chhHHHHHHHHHHhcCChhHHHHHHhhcC---C
Q 004644 296 ---VSW------------TTMIDGYVRIAKLDEARRLLDQMPYK---NIAAQTAMISGYVQNKRMDEANQIFDKIG---T 354 (740)
Q Consensus 296 ---~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~ 354 (740)
..| ......+.+.|++++|+..++++... +..+...++..+...|++++|++.|+++. +
T Consensus 337 ~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p 416 (1157)
T PRK11447 337 SNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP 416 (1157)
T ss_pred cchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 001 11233445566666666666665432 22233334444444444444444444422 3
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHhcccCC------------HHHHHHHHHHHHccCCHHHHHHHHHhh-CC-CCCe
Q 004644 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD------------IVTWNTMIAGYAQIRQMDDAVKIFEEM-GK-RRNT 420 (740)
Q Consensus 355 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~-~~~~ 420 (740)
.+...+..+...|. .++.++|+..++.+.... ...+..+...+...|++++|.+.|++. .. +.+.
T Consensus 417 ~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~ 495 (1157)
T PRK11447 417 GNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSV 495 (1157)
T ss_pred CCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 33344444444443 234555555555443211 112233344444555555555555544 11 1223
Q ss_pred ecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHh
Q 004644 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500 (740)
Q Consensus 421 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 500 (740)
..+..+...|.+.|++++|...++++.... | .++.....+...+
T Consensus 496 ~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P----------------------------------~~~~~~~a~al~l 539 (1157)
T PRK11447 496 WLTYRLAQDLRQAGQRSQADALMRRLAQQK--P----------------------------------NDPEQVYAYGLYL 539 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C----------------------------------CCHHHHHHHHHHH
Confidence 334444445555555555555555444321 2 1222222333344
Q ss_pred hccCCHHHHHHHhcccCCCC----c---------chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhc
Q 004644 501 AKCGRIQNAELLFKDADPVD----V---------ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567 (740)
Q Consensus 501 ~~~g~~~~A~~~~~~~~~~~----~---------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~ 567 (740)
.+.|+.++|...++.+.... . ..+..++..+...|+.++|+++++. .+++...+..+...+.
T Consensus 540 ~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~ 614 (1157)
T PRK11447 540 SGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQ 614 (1157)
T ss_pred HhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHH
Confidence 45566666666665544211 0 1123456677888999999888772 2444556677778888
Q ss_pred ccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHH
Q 004644 568 HVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGMK-IKPN-AGIWGTLLGACRMHQNIKLGR 644 (740)
Q Consensus 568 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~ 644 (740)
..|++++|+..|+.+.+ ..|+ ...+..++.+|...|++++|++.++... ..|+ ...+..+..++...|++++|.
T Consensus 615 ~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~ 691 (1157)
T PRK11447 615 QRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQ 691 (1157)
T ss_pred HcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHH
Confidence 89999999999998876 3565 7778888999999999999999888763 4453 446777778888899999999
Q ss_pred HHHHHhHccCCCCCc------chHHHHHHHHhcCCchHHHHHHHHHh
Q 004644 645 IAVEKLSELEPQKTS------CYALLSNMHAEAGRWDEVEKVRVSME 685 (740)
Q Consensus 645 ~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~ 685 (740)
..++++++..|+++. .+..++.++...|++++|...++...
T Consensus 692 ~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 692 RTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998877654 56667899999999999999988774
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1e-27 Score=276.55 Aligned_cols=599 Identities=11% Similarity=0.064 Sum_probs=402.7
Q ss_pred hHHHHHHHHcCCChhHHHHHHhhCCC---CCcchHHHHHHHHhcCCChHHHHHHHHhccC--CCcccH------------
Q 004644 49 YNSMISAYAKNGRVNDARKLFEQMPQ---RNLVSWNSMIAGYLHNDKVKEARELFDKMFR--PDLFSW------------ 111 (740)
Q Consensus 49 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~------------ 111 (740)
....++.....++.+.|.+.++++.. .++..+..++..+...|+.++|.+.+++..+ |+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCC
Confidence 44456788889999999999998864 4567788899999999999999999999865 443222
Q ss_pred -----HHHHHHHHcCCChHHHHHHHhhC--CCCCChhhH-HHHHHHHHhcCChhhHHHHHhcCCC---CCcccHHHHHHH
Q 004644 112 -----ALMITCYTRKGELEKARELFDLL--PNKEDTACW-NAMVAGYAKIGNYNEAKKLLDAMPS---KNIVSWNSMLSG 180 (740)
Q Consensus 112 -----~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 180 (740)
..++..+...|++++|.+.|+.+ ..+++.... ..+.......|+.++|++.|+++.. .+...+..+...
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~l 190 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALL 190 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 23345677889999999999887 333443221 1122223345888999999988764 244467788888
Q ss_pred HHhCCChHHHHHHHHhcccCCcchH---HHHHHHHhcCCChHHHHHHhcccCCCchhHHHHHHHHHHhcCChHHHHHHhc
Q 004644 181 YTKNGEMHLASKFFEAMEERDVVSW---NLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFD 257 (740)
Q Consensus 181 ~~~~g~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 257 (740)
+...|++++|+..++++.+...... ..........+.... ....+...+..+-.....+.|...+.
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~-----------~~~~l~~~l~~~p~~~~~~~A~~~L~ 259 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDA-----------SVAALQKYLQVFSDGDSVAAARSQLA 259 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChh-----------hHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 8888999999999988764222100 000001111111111 11222222333333333455666665
Q ss_pred cCCC--CCcc-hHHHHHHHHHHcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHhhhCCHHHHHHHHhhCCCCchhH---
Q 004644 258 QMPI--RNVV-AWNAMIAAYVQRGQIEEAARLFIEMPE--R-NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA--- 328 (740)
Q Consensus 258 ~~~~--~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--- 328 (740)
+... .|+. ........+...|++++|+..|++..+ | ++..+..+..++.+.|++++|+..|++..+.+...
T Consensus 260 ~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~ 339 (1157)
T PRK11447 260 EQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR 339 (1157)
T ss_pred HHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch
Confidence 4321 2222 223456778889999999999999874 3 67788899999999999999999999876433211
Q ss_pred --H------------HHHHHHHHhcCChhHHHHHHhhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHhccc---CCH
Q 004644 329 --Q------------TAMISGYVQNKRMDEANQIFDKIG---THDVVCWNVMIKGYAQCGRMDEAINLFRQMVN---KDI 388 (740)
Q Consensus 329 --~------------~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~ 388 (740)
+ ...+..+...|++++|+..|++.. |.+...+..+..++...|++++|++.|+++++ .+.
T Consensus 340 ~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~ 419 (1157)
T PRK11447 340 DKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT 419 (1157)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 1 122445566677777777776642 44555666667777777777777777777654 233
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhhCCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhh
Q 004644 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468 (740)
Q Consensus 389 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~ 468 (740)
..+..+...|. .++.++|...++.+..... ...... ...+. ...+......+...
T Consensus 420 ~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~-~~~~~~---------------------~~~l~--~~~~~~~a~~~~~~ 474 (1157)
T PRK11447 420 NAVRGLANLYR-QQSPEKALAFIASLSASQR-RSIDDI---------------------ERSLQ--NDRLAQQAEALENQ 474 (1157)
T ss_pred HHHHHHHHHHH-hcCHHHHHHHHHhCCHHHH-HHHHHH---------------------HHHhh--hhHHHHHHHHHHHC
Confidence 45555555553 3456666666665421100 000000 00000 01122233344455
Q ss_pred hhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHHHH
Q 004644 469 AALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFE 545 (740)
Q Consensus 469 ~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 545 (740)
|+++.|...++.+++.. +.++.++..+...|.+.|++++|...|+++. |.++..+..+...+...|+.++|+..++
T Consensus 475 g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~ 553 (1157)
T PRK11447 475 GKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLN 553 (1157)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 66666666666555543 3356677788999999999999999999764 5666777777777788999999999998
Q ss_pred HHHHCCCCCChH---------HHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHH
Q 004644 546 EMVMEGVAPDPV---------TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVK 616 (740)
Q Consensus 546 ~m~~~~~~p~~~---------~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 616 (740)
++......++.. .+......+...|+.++|+.+++. ..++...+..+++.+.+.|++++|++.++
T Consensus 554 ~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~ 627 (1157)
T PRK11447 554 TLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQ 627 (1157)
T ss_pred hCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 865432222221 223456678889999999999872 12336677889999999999999999997
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 004644 617 GM-KIKP-NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQ 690 (740)
Q Consensus 617 ~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 690 (740)
.. ...| +...+..+...+...|++++|+..++++++..|+++..+..++.++...|++++|.++++.+.....+
T Consensus 628 ~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 628 RVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 76 4556 55689999999999999999999999999999999999999999999999999999999998765543
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=1.6e-26 Score=253.53 Aligned_cols=614 Identities=12% Similarity=0.049 Sum_probs=391.1
Q ss_pred HHHcCCChhHHHHHHhhCCCC---CcchHHHHHHHHhcCCChHHHHHHHHhccC--CCcccHHHHHHHHHcCCChHHHHH
Q 004644 55 AYAKNGRVNDARKLFEQMPQR---NLVSWNSMIAGYLHNDKVKEARELFDKMFR--PDLFSWALMITCYTRKGELEKARE 129 (740)
Q Consensus 55 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~ 129 (740)
.+...|++++|+..|+++.+. ++.++..++..|...|++++|+..++++++ |+...+..++..+ +++++|..
T Consensus 53 ~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 53 KAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHH
Confidence 334457888888888877652 334567777788888888888888887765 4333333333222 77777778
Q ss_pred HHhhC--CCCCChhhHHHHHHH--------HHhcCChhhHHHHHhcCCCCC--cccHHH-HHHHHHhCCChHHHHHHHHh
Q 004644 130 LFDLL--PNKEDTACWNAMVAG--------YAKIGNYNEAKKLLDAMPSKN--IVSWNS-MLSGYTKNGEMHLASKFFEA 196 (740)
Q Consensus 130 ~~~~~--~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~--~~~~~~-l~~~~~~~g~~~~A~~~~~~ 196 (740)
+++++ ..|.+..++..++.. |.+.++..++++ .+...++ +..... +...|.+.|++++|+..+++
T Consensus 130 ~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 130 TVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 88777 455566666666665 666666666665 3333333 332333 36777788888888888887
Q ss_pred cccCCc---chHHHHHHHHhc-CCChHHHHHHhcccCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC-----CCcchH
Q 004644 197 MEERDV---VSWNLMLDGYVE-LDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPI-----RNVVAW 267 (740)
Q Consensus 197 ~~~~~~---~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~ 267 (740)
+.+.++ .....+..+|.. .++ +.+..+++.....++.++..++..|.+.|+.++|..+++++.. ++..+|
T Consensus 208 L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~ 286 (987)
T PRK09782 208 ARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSW 286 (987)
T ss_pred HHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHH
Confidence 775322 234455556666 355 7777776655466777777888888888888888888777652 222333
Q ss_pred HHHHHHHHHcCCHH-HHHHHHhhCCCCC-hhhHHHHHHHHhhhCCHHHHHHHHhhCCCCchhHHHHHHHHHHhcCChhHH
Q 004644 268 NAMIAAYVQRGQIE-EAARLFIEMPERN-PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345 (740)
Q Consensus 268 ~~l~~~~~~~g~~~-~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 345 (740)
-.+ +.+.+... .|..-|.+=..++ .......+..+.+.+.++.+.++.. ....+.. ...-.......+...++
T Consensus 287 ~~~---l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~r~~~~~~~~~~~~~ 361 (987)
T PRK09782 287 LYL---LSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANEM-LEERYAVSVATRNKAEA 361 (987)
T ss_pred HHH---HHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcchH-HHHHHhhccccCchhHH
Confidence 332 22222221 1111111100000 1112223555556666665555432 2221111 10000111122334444
Q ss_pred HHHHhhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHhccc------CCHHHHHHHHHHHHccCC-------------
Q 004644 346 NQIFDKIG---THDVVCWNVMIKGYAQCGRMDEAINLFRQMVN------KDIVTWNTMIAGYAQIRQ------------- 403 (740)
Q Consensus 346 ~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~------------- 403 (740)
.+.+..+. +.+......+.....+.|+.++|.++|++... .+.....-++..|.+.+.
T Consensus 362 ~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ 441 (987)
T PRK09782 362 LRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKP 441 (987)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccc
Confidence 44333332 22344444444445556666666666665543 112223344444444433
Q ss_pred ------------HHH---HHHHHHhh-CC-CC--CeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004644 404 ------------MDD---AVKIFEEM-GK-RR--NTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSA 464 (740)
Q Consensus 404 ------------~~~---A~~~~~~~-~~-~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~ 464 (740)
..+ +...+... +. ++ +...|..+..++.. ++..+|+..+.+..... |+......+..+
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~a 518 (987)
T PRK09782 442 LPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQ 518 (987)
T ss_pred cccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHH
Confidence 211 22222222 22 33 55677888877776 78888999887766543 665554444555
Q ss_pred hhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccCCCCcchHHHH---HHHHHhcCChHHHH
Q 004644 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSL---IAGYAINGNATEAI 541 (740)
Q Consensus 465 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~A~ 541 (740)
+...|+++.|...+..+... +|+...+..+...+.+.|+.++|...|++....++..++.. .......|++++|+
T Consensus 519 l~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHH
Confidence 56889999999998887554 34444556777888999999999999987764433333333 33344459999999
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC-C
Q 004644 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-K 619 (740)
Q Consensus 542 ~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 619 (740)
..|++.++ ..|+...+..+..++.+.|++++|+..|++..+ ..|+ ...+..++.++...|++++|++.+++. .
T Consensus 597 ~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 597 NDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999998 467877888999999999999999999999986 5677 778889999999999999999999765 4
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004644 620 IKP-NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689 (740)
Q Consensus 620 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 689 (740)
..| +...+..+..++...|+++.|+..++++++++|+++.+....+++..+..+++.|.+-++..-.-.+
T Consensus 672 l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 672 GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 566 5557999999999999999999999999999999999999999999999999999997776554443
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=1.5e-26 Score=253.58 Aligned_cols=589 Identities=11% Similarity=0.033 Sum_probs=427.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHhccC--CC-cccHHHHHHHHHcCCChHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCC
Q 004644 81 NSMIAGYLHNDKVKEARELFDKMFR--PD-LFSWALMITCYTRKGELEKARELFDLL--PNKEDTACWNAMVAGYAKIGN 155 (740)
Q Consensus 81 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 155 (740)
...+..+...|++++|+..|+++++ |+ ..++..++..|...|++++|+...++. .+|.+...+..++.+ ++
T Consensus 48 f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~ 123 (987)
T PRK09782 48 LDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PV 123 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----cc
Confidence 3344455667999999999999976 44 557888999999999999999999998 445555555555433 99
Q ss_pred hhhHHHHHhcCCC---CCcccHHHHHHH--------HHhCCChHHHHHHHHhcccCC--cchHHHH-HHHHhcCCChHHH
Q 004644 156 YNEAKKLLDAMPS---KNIVSWNSMLSG--------YTKNGEMHLASKFFEAMEERD--VVSWNLM-LDGYVELDDLDSA 221 (740)
Q Consensus 156 ~~~A~~~~~~~~~---~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~--~~~~~~l-~~~~~~~~~~~~a 221 (740)
+++|..+++++.. .+..++..+... |.+.++..+++. .+...++ +.+.... .+.|.+.+++++|
T Consensus 124 ~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~A 201 (987)
T PRK09782 124 EVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQA 201 (987)
T ss_pred ChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHH
Confidence 9999999999863 334455555555 777766666766 4444454 4444444 8899999999999
Q ss_pred HHHhcccC---CCchhHHHHHHHHHHh-cCChHHHHHHhccCCCCCcchHHHHHHHHHHcCCHHHHHHHHhhCCC-----
Q 004644 222 WKFFQKIP---EQNVVSWVTMLSGYAR-NGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE----- 292 (740)
Q Consensus 222 ~~~~~~~~---~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----- 292 (740)
+..+.++. +.+......|..+|.. .++ +.+..+++.....++..+..++..|.+.|+.++|.+.++++..
T Consensus 202 i~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 202 DTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 99999887 4556667788888888 477 8899998765567888999999999999999999999999873
Q ss_pred CChhhHHHHHHHHhhhCCHHHHHHHHh-hCCCCchhHHHHHHHHHHhcCChhHHHHHHhhcCCCChhhHHHHHHH-HHHc
Q 004644 293 RNPVSWTTMIDGYVRIAKLDEARRLLD-QMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKG-YAQC 370 (740)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~-~~~~ 370 (740)
|...+|...+.-+.... ..+..-+. +....-..+...++..+.+.+.++.+.++. ...+.++. . .+-.+ ....
T Consensus 281 ~~~~~~~~~l~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-~~r~~~~~~~ 355 (987)
T PRK09782 281 AQEKSWLYLLSKYSANP--VQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL-ATLPANEM-L-EERYAVSVAT 355 (987)
T ss_pred CccHHHHHHHHhccCch--hhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh-cCCCcchH-H-HHHHhhcccc
Confidence 55566655543332221 11111111 111122334455688999999999888774 35444543 1 11112 2234
Q ss_pred CCHHHHHHHHHhcccC---CHHHHHHHHHHHHccCCHHHHHHHHHhhCC-CCCe----ecHHHHHHHHHcCCC---hHHH
Q 004644 371 GRMDEAINLFRQMVNK---DIVTWNTMIAGYAQIRQMDDAVKIFEEMGK-RRNT----VSWNALISGFLQNEF---HLDA 439 (740)
Q Consensus 371 g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~----~~~~~li~~~~~~~~---~~~A 439 (740)
+...++....+.+.+. +......+.....+.|+.++|.++|+..-. +++. ..-+.++..|.+.+. ..++
T Consensus 356 ~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred CchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence 6777888888877653 666777777788899999999999999833 3332 234467788887766 4444
Q ss_pred HHH------------HHHH----------HH-CCCCCC---HHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHH
Q 004644 440 LKI------------FVLM----------TQ-EGKKAD---HSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG 493 (740)
Q Consensus 440 ~~~------------~~~m----------~~-~~~~p~---~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 493 (740)
+.+ ..+. .. .+..|+ ...+..+..++. .+..+.|...+....... |+....
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~-~~~~~eAi~a~~~Al~~~--Pd~~~~ 512 (987)
T PRK09782 436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYR-DTLPGVALYAWLQAEQRQ--PDAWQH 512 (987)
T ss_pred HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHH-hCCcHHHHHHHHHHHHhC--CchHHH
Confidence 443 1111 11 122233 333333333333 478888888777666553 454444
Q ss_pred HHHHHHhhccCCHHHHHHHhcccC--CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHhhcccc
Q 004644 494 NSLITMYAKCGRIQNAELLFKDAD--PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV-TFIGVLSACSHVG 570 (740)
Q Consensus 494 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~a~~~~g 570 (740)
..+...+...|++++|...|+++. +++...+..++..+...|+.++|...|++.++.+ |+.. .+..+.......|
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~G 590 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPG 590 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCC
Confidence 445556678999999999998765 4555667888889999999999999999999853 5443 3334444555679
Q ss_pred hHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 004644 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPNA-GIWGTLLGACRMHQNIKLGRIAVE 648 (740)
Q Consensus 571 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~ 648 (740)
++++|...|++..+ +.|+...|..++.++.+.|++++|++.++.. ...|+. ..+..+..++...|+.++|+..++
T Consensus 591 r~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 591 QPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred CHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999986 5677788999999999999999999999765 566754 478888889999999999999999
Q ss_pred HhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004644 649 KLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689 (740)
Q Consensus 649 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 689 (740)
++++++|+++.++..++.+|...|++++|...+++..+..+
T Consensus 668 ~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 668 RAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999998876553
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=1.3e-26 Score=224.09 Aligned_cols=433 Identities=15% Similarity=0.192 Sum_probs=280.7
Q ss_pred HHHHHHHcCCChHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCChhhHHHHHhcCCCC---CcccHHHHHHHHHhCCCh
Q 004644 113 LMITCYTRKGELEKARELFDLL--PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSK---NIVSWNSMLSGYTKNGEM 187 (740)
Q Consensus 113 ~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~ 187 (740)
.|..-..+.||+++|.+.-..+ .++.+....-.+..++.+..+++.....-....+. -..+|..+...+-+.|++
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH
Confidence 3344444455555555544444 22222222333344455555555444333222222 233566666666666666
Q ss_pred HHHHHHHHhcccCC---cchHHHHHHHHhcCCChHHHHHHhcccCCCc---hhHHHHHHHHHHhcCChHHHHHHhccCCC
Q 004644 188 HLASKFFEAMEERD---VVSWNLMLDGYVELDDLDSAWKFFQKIPEQN---VVSWVTMLSGYARNGRMLEARRLFDQMPI 261 (740)
Q Consensus 188 ~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 261 (740)
++|+.+|+.+.+.+ ...|..++.++...|+.+.|.+.|..++.-| .-+...++...-..|++++|...+.+..+
T Consensus 133 ~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 133 QDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 66666666666422 3455555555555555555555555554222 23344556666667777777777766553
Q ss_pred CC---cchHHHHHHHHHHcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHhhhCCHHHHHHHHhhCCCCchhHHHHHHHH
Q 004644 262 RN---VVAWNAMIAAYVQRGQIEEAARLFIEMPERNP---VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISG 335 (740)
Q Consensus 262 ~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 335 (740)
.+ .++|+.|...+-.+|+...|+..|++..+-|+ ..|..+...|...+.++.|...+.+....
T Consensus 213 ~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l----------- 281 (966)
T KOG4626|consen 213 TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL----------- 281 (966)
T ss_pred hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-----------
Confidence 22 25677777777777777777777777665332 34555666666666666665555443211
Q ss_pred HHhcCChhHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHhccc--CC-HHHHHHHHHHHHccCCHHHHHHHHH
Q 004644 336 YVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN--KD-IVTWNTMIAGYAQIRQMDDAVKIFE 412 (740)
Q Consensus 336 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~ 412 (740)
.|....++..+...|...|.++.|+..|+++++ |+ +..|+.|..++...|++.+|.+.|.
T Consensus 282 -----------------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 282 -----------------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred -----------------CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 134555666666677777777777777777754 22 3566666666666666666666665
Q ss_pred hhCCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhH
Q 004644 413 EMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492 (740)
Q Consensus 413 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 492 (740)
+.. .. .
T Consensus 345 kaL--------------------------------~l--~---------------------------------------- 350 (966)
T KOG4626|consen 345 KAL--------------------------------RL--C---------------------------------------- 350 (966)
T ss_pred HHH--------------------------------Hh--C----------------------------------------
Confidence 541 10 1
Q ss_pred HHHHHHHhhccCCHHHHHHHhcccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHhhcccch
Q 004644 493 GNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP-VTFIGVLSACSHVGL 571 (740)
Q Consensus 493 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~a~~~~g~ 571 (740)
+....+.+.|..+|...|..++|..+|....+ +.|.- ..++.+...+-..|+
T Consensus 351 -------------------------p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgn 403 (966)
T KOG4626|consen 351 -------------------------PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGN 403 (966)
T ss_pred -------------------------CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhccc
Confidence 22233456677777777888888888887776 56664 367777777888888
Q ss_pred HHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHH
Q 004644 572 VDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPNAG-IWGTLLGACRMHQNIKLGRIAVE 648 (740)
Q Consensus 572 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~ 648 (740)
+++|+..|++.++ |.|+ .+.|+.++..|-..|+.+.|++.+... .+.|... .++.|...++-.|++.+|+..|+
T Consensus 404 l~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 404 LDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 8888888888764 7888 888999999999999999999988554 5677544 78899999999999999999999
Q ss_pred HhHccCCCCCcchHHHHHHHHhcCCchHH
Q 004644 649 KLSELEPQKTSCYALLSNMHAEAGRWDEV 677 (740)
Q Consensus 649 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 677 (740)
.+++++||.|.+|.+|...+.-..+|.+=
T Consensus 481 ~aLklkPDfpdA~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 481 TALKLKPDFPDAYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred HHHccCCCCchhhhHHHHHHHHHhcccch
Confidence 99999999999999999998888888873
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.5e-23 Score=211.45 Aligned_cols=601 Identities=13% Similarity=0.118 Sum_probs=371.5
Q ss_pred hhHHHHHHhhccCCCccchH-HHH--HHHHcCCChhHHHHHHhhCCCCC----cchHHHHHHHHhcCCChHHHHHHHHhc
Q 004644 31 VEEAIKIFSQMSQKNTVTYN-SMI--SAYAKNGRVNDARKLFEQMPQRN----LVSWNSMIAGYLHNDKVKEARELFDKM 103 (740)
Q Consensus 31 ~~~A~~~~~~~~~~~~~~~~-~l~--~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 103 (740)
++.|.+.|..+...+|.... -++ .+....|++..|+.+|..+...+ +.....++.++++.|+.+.|+..|.++
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 47888888877754444222 233 34556788999999998865322 233456778888899999999999998
Q ss_pred cCCCcccHH---HHHHHHHcC---CChHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCChhhHHHHHhcCCCCC-----
Q 004644 104 FRPDLFSWA---LMITCYTRK---GELEKARELFDLL--PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN----- 170 (740)
Q Consensus 104 ~~~~~~~~~---~l~~~~~~~---~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 170 (740)
++-|+.... .|...-... ..+..+...+..+ .++.++.+.+.|...|.-.|++..+..+.+.+....
T Consensus 226 lqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~ 305 (1018)
T KOG2002|consen 226 LQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSI 305 (1018)
T ss_pred HhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHH
Confidence 775543322 222222222 3455566666665 566778888888888888888888888777665322
Q ss_pred -cccHHHHHHHHHhCCChHHHHHHHHhcccC--Cc--chHHHHHHHHhcCCChHHHHHHhcccC---CCchhHHHHHHHH
Q 004644 171 -IVSWNSMLSGYTKNGEMHLASKFFEAMEER--DV--VSWNLMLDGYVELDDLDSAWKFFQKIP---EQNVVSWVTMLSG 242 (740)
Q Consensus 171 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~ 242 (740)
..+|..++.+|...|++++|...|-+..+. +. ..+..++..+...|+++.+...|+++. |.+..+...|+..
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence 235777888888888888888888777752 22 345566777888888888888887775 6666777777777
Q ss_pred HHhcC----ChHHHHHHhccCCC---CCcchHHHHHHHHHHcCCHHHHHHHHhhCC--------CCChhhHHHHHHHHhh
Q 004644 243 YARNG----RMLEARRLFDQMPI---RNVVAWNAMIAAYVQRGQIEEAARLFIEMP--------ERNPVSWTTMIDGYVR 307 (740)
Q Consensus 243 ~~~~g----~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~l~~~~~~ 307 (740)
|...+ ..+.|..++.+... .|...|-.+...+....-+.. +.+|..+. ...+...+.+......
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~ 464 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFR 464 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH
Confidence 77664 45666666666553 344556666655554443332 44443322 2445556666666666
Q ss_pred hCCHHHHHHHHhhCCCCchhHHHHHHHHHHhcCChhHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcccCC
Q 004644 308 IAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD 387 (740)
Q Consensus 308 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 387 (740)
.|.+..|...|......-.+ .-+.++. ...+..+--.+...+...++++.|.+.|..+++..
T Consensus 465 ~g~~~~A~~~f~~A~~~~~~-----------~~n~de~-------~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh 526 (1018)
T KOG2002|consen 465 LGNIEKALEHFKSALGKLLE-----------VANKDEG-------KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH 526 (1018)
T ss_pred hcChHHHHHHHHHHhhhhhh-----------hcCcccc-------ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 66666666655554321000 0000000 00011122234455555667777777777766533
Q ss_pred H---HHHHHHHHHHHccCCHHHHHHHHHhh--CCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHC-CCCCCHHHHHHH
Q 004644 388 I---VTWNTMIAGYAQIRQMDDAVKIFEEM--GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE-GKKADHSTLACA 461 (740)
Q Consensus 388 ~---~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~~ 461 (740)
| ..|--++.+....+...+|...+... ....++..|+-+...+.+...+..|..-|...... ...+|..+...+
T Consensus 527 p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaL 606 (1018)
T KOG2002|consen 527 PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIAL 606 (1018)
T ss_pred chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHh
Confidence 2 22233333333345666666666665 33445666666666777777777776666555443 223566665555
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChH
Q 004644 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNAT 538 (740)
Q Consensus 462 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 538 (740)
-..|... +.+..-.| -...+..++|+++|.++. |.|..+-|.++-+++..|++.
T Consensus 607 GN~~~~~------------l~~~~rn~-----------ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~ 663 (1018)
T KOG2002|consen 607 GNVYIQA------------LHNPSRNP-----------EKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFS 663 (1018)
T ss_pred hHHHHHH------------hcccccCh-----------HHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCch
Confidence 4433221 00000000 123356778888888655 677788888888999999999
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHH-Hh
Q 004644 539 EAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV-KG 617 (740)
Q Consensus 539 ~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~-~~ 617 (740)
+|.++|.+..+.. .-+..+|..+..+|...|++..|++.|+...++|.-..+.+...+|+.++.+.|.+.+|.+.. ..
T Consensus 664 ~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 664 EARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKA 742 (1018)
T ss_pred HHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999998874 334456788888999999999999999999888776666888999999999999999998865 34
Q ss_pred CCCCCCHH-H-HHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 004644 618 MKIKPNAG-I-WGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQ 690 (740)
Q Consensus 618 ~~~~p~~~-~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 690 (740)
+...|... . +|..+ . ..+..+.+++..| .++=.+....+..++|.++|..|...+.+
T Consensus 743 ~~~~p~~~~v~FN~a~-v---------~kkla~s~lr~~k------~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 743 RHLAPSNTSVKFNLAL-V---------LKKLAESILRLEK------RTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHhCCccchHHhHHHH-H---------HHHHHHHHHhccc------ccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44445333 2 33221 1 1233334444444 23334556667778888888888765543
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=6.1e-24 Score=205.68 Aligned_cols=352 Identities=16% Similarity=0.198 Sum_probs=260.0
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHhhhCCHHHHHHHHhhCCCCch---hHHHHHHHHHHh
Q 004644 265 VAWNAMIAAYVQRGQIEEAARLFIEMPE---RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNI---AAQTAMISGYVQ 338 (740)
Q Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~ 338 (740)
.+|..+.+.+-..|+.++|+..|+.+.+ .....|..+..++...|+.+.|.+.|...+..++ .+.+.++..+..
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka 196 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKA 196 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHh
Confidence 4455555555555555555555555553 1234555555555555555555555555443322 223334444445
Q ss_pred cCChhHHHHHHhhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHhcccCCH---HHHHHHHHHHHccCCHHHHHHHHH
Q 004644 339 NKRMDEANQIFDKIG---THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI---VTWNTMIAGYAQIRQMDDAVKIFE 412 (740)
Q Consensus 339 ~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~ 412 (740)
.|++.+|...+.+.. +.-...|+.|...+...|+...|+..|+++++-|+ ..|..|+..|...+.+++|...|.
T Consensus 197 ~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~ 276 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYL 276 (966)
T ss_pred hcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHH
Confidence 555555555554432 23346788888888888888888888888876443 567777777777777777777666
Q ss_pred hhCCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhH
Q 004644 413 EMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFV 492 (740)
Q Consensus 413 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 492 (740)
+.. ..+|+ ...+
T Consensus 277 rAl----------------------------------~lrpn----------------------------------~A~a 288 (966)
T KOG4626|consen 277 RAL----------------------------------NLRPN----------------------------------HAVA 288 (966)
T ss_pred HHH----------------------------------hcCCc----------------------------------chhh
Confidence 651 12233 2223
Q ss_pred HHHHHHHhhccCCHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHhhcc
Q 004644 493 GNSLITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV-TFIGVLSACSH 568 (740)
Q Consensus 493 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~a~~~ 568 (740)
+..+...|..+|.+|-|+..+++.. |.-+.+|+.|..++-..|+..+|.+.|.+.+. ..|+.. ..+.+...+..
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYRE 366 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHH
Confidence 4455666777888888888887665 44457899999999999999999999999988 567754 88899999999
Q ss_pred cchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 004644 569 VGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPNAG-IWGTLLGACRMHQNIKLGRI 645 (740)
Q Consensus 569 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~ 645 (740)
.|..++|..+|....+ +.|. ....+.|+..|-.+|++++|+..+++. .++|+.. .++.+...|...|+...|+.
T Consensus 367 ~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred hccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHH
Confidence 9999999999998865 6788 778999999999999999999999664 7889766 79999999999999999999
Q ss_pred HHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004644 646 AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689 (740)
Q Consensus 646 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 689 (740)
.+.+++.++|.-.+++.+|+.+|-..|+..+|..-++......+
T Consensus 444 ~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 444 CYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999998865443
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.92 E-value=8e-22 Score=201.62 Aligned_cols=543 Identities=14% Similarity=0.150 Sum_probs=346.1
Q ss_pred hhHHHHHHhhCCCCCcc-hHHHHH--HHHhcCCChHHHHHHHHhccC------CCcccHHHHHHHHHcCCChHHHHHHHh
Q 004644 62 VNDARKLFEQMPQRNLV-SWNSMI--AGYLHNDKVKEARELFDKMFR------PDLFSWALMITCYTRKGELEKARELFD 132 (740)
Q Consensus 62 ~~~A~~~~~~~~~~~~~-~~~~l~--~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~ 132 (740)
.+.|...|..+.+.++. ....++ ......|++..|+.+|..++. ||+ ......++.+.++.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhhHHHHHH
Confidence 47777777777653222 122333 334566788888888888643 333 2334466677788888888887
Q ss_pred hC--CCCCChhhHHHHHHHHHhcCC---hhhHHHHHhcCC---CCCcccHHHHHHHHHhCCChHHHHHHHHhcccCC---
Q 004644 133 LL--PNKEDTACWNAMVAGYAKIGN---YNEAKKLLDAMP---SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD--- 201 (740)
Q Consensus 133 ~~--~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--- 201 (740)
.+ .+|.++.+...|+.+-....+ +..+...+...- ..|++..+.|...|...|++..+..+...+....
T Consensus 224 ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 224 RALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred HHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhh
Confidence 76 444455555555544444333 445555555433 4677778888888888888888888877776422
Q ss_pred ---cchHHHHHHHHhcCCChHHHHHHhcccC---CCc-hhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHH
Q 004644 202 ---VVSWNLMLDGYVELDDLDSAWKFFQKIP---EQN-VVSWVTMLSGYARNGRMLEARRLFDQMPI---RNVVAWNAMI 271 (740)
Q Consensus 202 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~ 271 (740)
...|+.++++|-..|++++|..+|.+.. +.+ ...+..|+++|.+.|+++.+...|+++.. .+..+...|+
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG 383 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILG 383 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 3457778888888888888888887766 222 34566777888888888888888877653 3345555566
Q ss_pred HHHHHcC----CHHHHHHHHhhCCCC---ChhhHHHHHHHHhhhCCHHHHHHHHhhCCCCchhHHHHHHHHHHhcCChhH
Q 004644 272 AAYVQRG----QIEEAARLFIEMPER---NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDE 344 (740)
Q Consensus 272 ~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 344 (740)
..|...+ ..+.|..++.+..++ |...|..+...+....-+ .+...+. .
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~-~sL~~~~------------------------~ 438 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW-ASLDAYG------------------------N 438 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH-HHHHHHH------------------------H
Confidence 6665554 445666666666543 344555555554433322 2233332 2
Q ss_pred HHHHHhh-cCCCChhhHHHHHHHHHHcCCHHHHHHHHHhccc-------------CCHHHHHHHHHHHHccCCHHHHHHH
Q 004644 345 ANQIFDK-IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN-------------KDIVTWNTMIAGYAQIRQMDDAVKI 410 (740)
Q Consensus 345 A~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~~~~~~~l~~~~~~~~~~~~A~~~ 410 (740)
|..++.. ..+..+...|.+...+...|++.+|...|.++.. +++.+-..+...+-..++.+.|.+.
T Consensus 439 A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~ 518 (1018)
T KOG2002|consen 439 ALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEM 518 (1018)
T ss_pred HHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHH
Confidence 3322222 1234566778888888888888888888877642 1222345566666677788888888
Q ss_pred HHhh-CCCCCee-cHHHHHHHHHcCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCC
Q 004644 411 FEEM-GKRRNTV-SWNALISGFLQNEFHLDALKIFVLMTQEG-KKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV 487 (740)
Q Consensus 411 ~~~~-~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~ 487 (740)
|..+ ...|+-+ .|-.++......+...+|..+++...... ..|+..+
T Consensus 519 Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ars------------------------------ 568 (1018)
T KOG2002|consen 519 YKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARS------------------------------ 568 (1018)
T ss_pred HHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHH------------------------------
Confidence 8877 2233322 23333323333556667777776654432 2333333
Q ss_pred CChhHHHHHHHHhhccCCHHHHHHHhcccC-----CCCcchHHHHHHHHH------------hcCChHHHHHHHHHHHHC
Q 004644 488 NDLFVGNSLITMYAKCGRIQNAELLFKDAD-----PVDVISWNSLIAGYA------------INGNATEAIKLFEEMVME 550 (740)
Q Consensus 488 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~------------~~g~~~~A~~~~~~m~~~ 550 (740)
.+.+.|.+...+..|.+-|..+. .+|+.+.-+|++.|. ..+..++|+++|.+.+..
T Consensus 569 -------l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~ 641 (1018)
T KOG2002|consen 569 -------LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN 641 (1018)
T ss_pred -------HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc
Confidence 23333333333333333222111 122222233333222 235678999999999885
Q ss_pred CCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhC----CCCCCHHH
Q 004644 551 GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM----KIKPNAGI 626 (740)
Q Consensus 551 ~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~ 626 (740)
. +-|...-+++.-.+++.|++.+|+.+|.+.++. .....++|-.++.+|..+|++..|+++|+.. -.+.+..+
T Consensus 642 d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~v 718 (1018)
T KOG2002|consen 642 D-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEV 718 (1018)
T ss_pred C-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 3 445667788888899999999999999999985 3344678889999999999999999998664 22346668
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhc
Q 004644 627 WGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEA 671 (740)
Q Consensus 627 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 671 (740)
.+.|..++...|.+.+|...+..++.+.|.++...++++-+..+.
T Consensus 719 l~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 719 LHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKL 763 (1018)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHH
Confidence 899999999999999999999999999999999888888776553
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=3.4e-20 Score=201.29 Aligned_cols=189 Identities=18% Similarity=0.147 Sum_probs=134.8
Q ss_pred HHHHHHhhccCCHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHhhccc
Q 004644 494 NSLITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD-PVTFIGVLSACSHV 569 (740)
Q Consensus 494 ~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~a~~~~ 569 (740)
..+...+...|++++|...|+++. |.+...|..++..+...|++++|+..|++.++. .|+ ...+..+..++...
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHC
Confidence 344444555555555555555432 445667777788888888888888888888774 454 34566677777788
Q ss_pred chHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC-CCCCCH-HH-------HHHHHHHHHhcCC
Q 004644 570 GLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPNA-GI-------WGTLLGACRMHQN 639 (740)
Q Consensus 570 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~-------~~~l~~~~~~~g~ 639 (740)
|++++|+..|++..+. .|+ ...+..++.++...|++++|++.++.. ...|+. .. ++..+..+...|+
T Consensus 447 g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 447 GSIASSMATFRRCKKN---FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 8888888888887753 454 667778888888888888888887663 333321 11 1112222334689
Q ss_pred HHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004644 640 IKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGS 687 (740)
Q Consensus 640 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 687 (740)
+++|+..++++++++|++..++..++.+|.+.|++++|.+.+++..+.
T Consensus 524 ~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 524 FIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999999888999999999999999999998887654
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=1.1e-18 Score=189.46 Aligned_cols=267 Identities=13% Similarity=0.055 Sum_probs=173.8
Q ss_pred cCCHHHHHHHHHhcccC------CHHHHHHHHHHHHccCCHHHHHHHHHhh-CCCC-CeecHHHHHHHHHcCCChHHHHH
Q 004644 370 CGRMDEAINLFRQMVNK------DIVTWNTMIAGYAQIRQMDDAVKIFEEM-GKRR-NTVSWNALISGFLQNEFHLDALK 441 (740)
Q Consensus 370 ~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~A~~ 441 (740)
.+++++|+..|+++++. ....|..++..+...|++++|...|++. ...| +...|..+...+...|++++|+.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 35666777777666532 2345566666666677777777777665 2222 23455666666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccC---C
Q 004644 442 IFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD---P 518 (740)
Q Consensus 442 ~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~ 518 (740)
.|++..... | .+..++..+...|...|++++|...|++.. |
T Consensus 387 ~~~~al~~~--p----------------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P 430 (615)
T TIGR00990 387 DFDKALKLN--S----------------------------------EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP 430 (615)
T ss_pred HHHHHHHhC--C----------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 666654432 2 233445556666777777777777777654 4
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC-cch--
Q 004644 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD-PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEH-- 594 (740)
Q Consensus 519 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~-- 594 (740)
.+...|..++..+.+.|++++|+..|++.+.. .|+ ...+..+..++...|++++|+..|++..+ +.|+ ...
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~ 505 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYM 505 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccc
Confidence 55666777788888888888888888888763 454 45677777788888888888888888765 3333 111
Q ss_pred -----HHHHhhhhhccCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHH
Q 004644 595 -----YACMIDLLSRAGRLDEAFEMVKGM-KIKPNAG-IWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNM 667 (740)
Q Consensus 595 -----~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 667 (740)
++.....+...|++++|.++++.. ...|+.. .+..++..+...|++++|+..+++++++.+...+.+
T Consensus 506 ~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~------ 579 (615)
T TIGR00990 506 NVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV------ 579 (615)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH------
Confidence 111222334468999999988664 5556444 688888889999999999999999999887644321
Q ss_pred HHhcCCchHHHHHHHHHh
Q 004644 668 HAEAGRWDEVEKVRVSME 685 (740)
Q Consensus 668 ~~~~g~~~~a~~~~~~~~ 685 (740)
....|.+|.++....+
T Consensus 580 --~a~~~~~a~~~~~~~~ 595 (615)
T TIGR00990 580 --QAISYAEATRTQIQVQ 595 (615)
T ss_pred --HHHHHHHHHHHHHHHH
Confidence 2234455666555444
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=7.3e-18 Score=186.25 Aligned_cols=186 Identities=9% Similarity=0.070 Sum_probs=121.7
Q ss_pred ccCCHHHHHHHhcccCCCC---cc-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-----HHHHHHHHhhcccchH
Q 004644 502 KCGRIQNAELLFKDADPVD---VI-SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP-----VTFIGVLSACSHVGLV 572 (740)
Q Consensus 502 ~~g~~~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~ll~a~~~~g~~ 572 (740)
..|+.++|+..|+.+...+ +. .-..+...|...|++++|+..|+++.+. .|.. .....+..++...|++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccH
Confidence 4456666666666554211 11 1112355666667777777777666543 2221 2334444456666777
Q ss_pred HHHHHHHHHhhhhcC----------CcCC---cchHHHHhhhhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 004644 573 DGGLKLFECMTEVYA----------IEPL---VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKP-NAGIWGTLLGACRMH 637 (740)
Q Consensus 573 ~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 637 (740)
++|.++++.+.+..+ -.|+ ...+..++.++...|++++|++.++++ ...| +...+..+...+...
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 777777666654311 1122 223456777888888888888888775 3344 445778888888888
Q ss_pred CCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004644 638 QNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689 (740)
Q Consensus 638 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 689 (740)
|+++.|+..++++++++|+++..+..++.++...|+|++|..+++.+.+..+
T Consensus 407 g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 407 GWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 8888888888888888888888888888888888888888888888876544
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=7.4e-17 Score=174.12 Aligned_cols=176 Identities=13% Similarity=0.063 Sum_probs=90.9
Q ss_pred HHHHHHhcCChHHHHHHhccCCCCCcc---hHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHH-H--HHHHhhhCCHH
Q 004644 239 MLSGYARNGRMLEARRLFDQMPIRNVV---AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTT-M--IDGYVRIAKLD 312 (740)
Q Consensus 239 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-l--~~~~~~~~~~~ 312 (740)
-+....+.|+++.|+..|+++...++. ....++..+...|+.++|+..+++...|++..+.. + ...+...|+++
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 333444555555555555554432221 11244444445555555555555555433222221 1 22344445555
Q ss_pred HHHHHHhhCCCC---chhHHHHHHHHHHhcCChhHHHHHHhhcCCCChhh--HHHHHHHHHHcCCHHHHHHHHHhccc--
Q 004644 313 EARRLLDQMPYK---NIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVC--WNVMIKGYAQCGRMDEAINLFRQMVN-- 385 (740)
Q Consensus 313 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~-- 385 (740)
.|..+++++.+. +..+...++..+...++.++|++.++++.+.++.. +..++..+...++..+|+..++++++
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 555555554422 22333334444455555555555555544443332 33333344445666668888888875
Q ss_pred C-CHHHHHHHHHHHHccCCHHHHHHHHHhh
Q 004644 386 K-DIVTWNTMIAGYAQIRQMDDAVKIFEEM 414 (740)
Q Consensus 386 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 414 (740)
| +...+..+...+.+.|-...|.++..+-
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~ 229 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKEN 229 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 3 4566677778888888888888777764
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=1.3e-18 Score=179.60 Aligned_cols=301 Identities=16% Similarity=0.155 Sum_probs=215.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhcccC---CHHHHHHHHHHHHccCCHHHHHHHHHhhCCCCCe------ecHHHHHHHHH
Q 004644 361 NVMIKGYAQCGRMDEAINLFRQMVNK---DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNT------VSWNALISGFL 431 (740)
Q Consensus 361 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~li~~~~ 431 (740)
...+..+...|++++|+..|+++++. ++.++..++..+...|++++|..+++.+...++. ..+..++..|.
T Consensus 39 y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 39 YFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 33455677889999999999999753 3457888888999999999999999888444321 35677788888
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHH
Q 004644 432 QNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAEL 511 (740)
Q Consensus 432 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~ 511 (740)
..|++++|..+|.++.+.. +++..++..+...+...|+++.|...+..+.+.+..+....
T Consensus 119 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------- 178 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------- 178 (389)
T ss_pred HCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-------------------
Confidence 8888888888888887542 22334444444444444444444444444443321110000
Q ss_pred HhcccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcC
Q 004644 512 LFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD-PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP 590 (740)
Q Consensus 512 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 590 (740)
....|..++..+...|++++|+..|+++.+. .|+ ...+..+...+...|++++|.++|+++.+. .|
T Consensus 179 --------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p 245 (389)
T PRK11788 179 --------IAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DP 245 (389)
T ss_pred --------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---Ch
Confidence 0113455667777888888888888888774 344 346667777788888888888888888753 34
Q ss_pred C--cchHHHHhhhhhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHH
Q 004644 591 L--VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNM 667 (740)
Q Consensus 591 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 667 (740)
+ ...+..++.+|.+.|++++|.+.++.+ ...|+...+..+...+...|+++.|...++++++..|+++.....+...
T Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~ 325 (389)
T PRK11788 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYH 325 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHh
Confidence 3 456778888999999999999988776 3567777778888889999999999999999999999987544344333
Q ss_pred HHh--cCCchHHHHHHHHHhhCCCccCCc
Q 004644 668 HAE--AGRWDEVEKVRVSMEGSGAQKQPG 694 (740)
Q Consensus 668 ~~~--~g~~~~a~~~~~~~~~~~~~~~~~ 694 (740)
+.. .|+.+++..+++.|.+++++..|+
T Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 326 LAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 322 569999999999999999988887
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=1.7e-17 Score=179.25 Aligned_cols=264 Identities=11% Similarity=-0.005 Sum_probs=168.1
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHccCCHHHHHHHHHhh-CCCCCe-ecHHHHHH
Q 004644 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQMVN---KDIVTWNTMIAGYAQIRQMDDAVKIFEEM-GKRRNT-VSWNALIS 428 (740)
Q Consensus 354 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~-~~~~~li~ 428 (740)
|.++..+..+...+.+.|++++|+..|+++++ .++..+..++..+...|++++|...++.+ ...|+. ..+..+ .
T Consensus 107 P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~ 185 (656)
T PRK15174 107 VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-L 185 (656)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-H
Confidence 34455555555666666666666666666543 22345555555555666666665555544 112221 122121 2
Q ss_pred HHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHH
Q 004644 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508 (740)
Q Consensus 429 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 508 (740)
.+...|++++|+..++.+.... ..++......++..+.+.|+.++
T Consensus 186 ~l~~~g~~~eA~~~~~~~l~~~-----------------------------------~~~~~~~~~~l~~~l~~~g~~~e 230 (656)
T PRK15174 186 SFLNKSRLPEDHDLARALLPFF-----------------------------------ALERQESAGLAVDTLCAVGKYQE 230 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-----------------------------------CCcchhHHHHHHHHHHHCCCHHH
Confidence 2444555555555555544332 11222223334556667777777
Q ss_pred HHHHhcccC---CCCcchHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCCh-HHHHHHHHhhcccchHHHHHHHHH
Q 004644 509 AELLFKDAD---PVDVISWNSLIAGYAINGNATE----AIKLFEEMVMEGVAPDP-VTFIGVLSACSHVGLVDGGLKLFE 580 (740)
Q Consensus 509 A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~m~~~~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~ 580 (740)
|...|++.. |.+...+..++..+...|++++ |+..|++..+. .|+. ..+..+...+...|++++|+..++
T Consensus 231 A~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~ 308 (656)
T PRK15174 231 AIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQ 308 (656)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777554 5566677778888888888875 78888888874 5554 477777888888888888888888
Q ss_pred HhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhHccCCCC
Q 004644 581 CMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPNAGIW-GTLLGACRMHQNIKLGRIAVEKLSELEPQK 657 (740)
Q Consensus 581 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 657 (740)
++.+ ..|+ ...+..++.+|.+.|++++|.+.++.+ ...|+...+ ..+..++...|+.++|+..++++++.+|++
T Consensus 309 ~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 309 QSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 8876 3565 556677888888889999998888765 345655443 334556778899999999999999998887
Q ss_pred C
Q 004644 658 T 658 (740)
Q Consensus 658 ~ 658 (740)
.
T Consensus 386 ~ 386 (656)
T PRK15174 386 L 386 (656)
T ss_pred c
Confidence 4
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=2e-18 Score=178.34 Aligned_cols=288 Identities=15% Similarity=0.091 Sum_probs=149.2
Q ss_pred HHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCCHHHHHHHHhhCCCC-C------hhhHHHHHHHHhhhC
Q 004644 240 LSGYARNGRMLEARRLFDQMPI---RNVVAWNAMIAAYVQRGQIEEAARLFIEMPER-N------PVSWTTMIDGYVRIA 309 (740)
Q Consensus 240 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~l~~~~~~~~ 309 (740)
+..+...|++++|...|+++.. .+..++..++..+...|++++|+..++.+... + ..++..++..+...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3344455555555555555442 12234455555555555555555555554421 1 122333344444444
Q ss_pred CHHHHHHHHhhCCCCchhHHHHHHHHHHhcCChhHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcccCC--
Q 004644 310 KLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD-- 387 (740)
Q Consensus 310 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 387 (740)
+++.|..+++++...+ +.+..+++.++..+.+.|++++|+..++.+++.+
T Consensus 122 ~~~~A~~~~~~~l~~~----------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 173 (389)
T PRK11788 122 LLDRAEELFLQLVDEG----------------------------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD 173 (389)
T ss_pred CHHHHHHHHHHHHcCC----------------------------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC
Confidence 4444444444432211 2345566667777777777777777777665421
Q ss_pred ------HHHHHHHHHHHHccCCHHHHHHHHHhhC--CCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 004644 388 ------IVTWNTMIAGYAQIRQMDDAVKIFEEMG--KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLA 459 (740)
Q Consensus 388 ------~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 459 (740)
...+..++..+.+.|++++|...|+++. .+.+...+..++..+.+.|++++|+.+|+++...+ |+.
T Consensus 174 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~---- 247 (389)
T PRK11788 174 SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD--PEY---- 247 (389)
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--hhh----
Confidence 1133455566666777777777776662 12234455566666777777777777777665542 211
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccC--CCCcchHHHHHHHHHhcCCh
Q 004644 460 CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD--PVDVISWNSLIAGYAINGNA 537 (740)
Q Consensus 460 ~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 537 (740)
...+++.++..|.+.|++++|...++++. .|+...+..++..+...|++
T Consensus 248 -----------------------------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~ 298 (389)
T PRK11788 248 -----------------------------LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGP 298 (389)
T ss_pred -----------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCH
Confidence 11223344445555555555555555433 23333445555556666666
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHhhcc---cchHHHHHHHHHHhhhhcCCcCCcc
Q 004644 538 TEAIKLFEEMVMEGVAPDPVTFIGVLSACSH---VGLVDGGLKLFECMTEVYAIEPLVE 593 (740)
Q Consensus 538 ~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~---~g~~~~a~~~~~~~~~~~~~~p~~~ 593 (740)
++|+.+|+++.+. .|+..++..++..+.. .|+.++++..++.+.+. ++.|++.
T Consensus 299 ~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 299 EAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCCC
Confidence 6666666655552 4555555555544332 33555666666655553 3444433
No 24
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.83 E-value=3.4e-15 Score=146.67 Aligned_cols=598 Identities=14% Similarity=0.116 Sum_probs=345.3
Q ss_pred CChhHHHHHHhhCCC---CCcchHHHHHHHHhcCCChHHHHHHHHhccCCCcccHHHHHHHHHcCCChHHHHHHHhhC--
Q 004644 60 GRVNDARKLFEQMPQ---RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLL-- 134 (740)
Q Consensus 60 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-- 134 (740)
+++.+|+.++....+ .++..|..-++.--..|.+..|..+..+..+..+.+-..-+.+ ++....+.|..+....
T Consensus 265 ~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLea-iRLhp~d~aK~vvA~Avr 343 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEA-IRLHPPDVAKTVVANAVR 343 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHH-HhcCChHHHHHHHHHHHH
Confidence 345556666655544 2334455555555556666666665555433111111111111 2333444455444443
Q ss_pred CCCCChhhHHHHHHHHHhcCChhhHHHHHhcCCC---CCcccHHHHHHHHHhCCChHHHHHHHHhcccCCcchHHHHHHH
Q 004644 135 PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS---KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDG 211 (740)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 211 (740)
..|.++..|..-+..-.. ...-.+++.+.++ .++..|. +.....+.+.|.-++.++.+-=+. -..+.-+
T Consensus 344 ~~P~Sv~lW~kA~dLE~~---~~~K~RVlRKALe~iP~sv~LWK----aAVelE~~~darilL~rAveccp~-s~dLwlA 415 (913)
T KOG0495|consen 344 FLPTSVRLWLKAADLESD---TKNKKRVLRKALEHIPRSVRLWK----AAVELEEPEDARILLERAVECCPQ-SMDLWLA 415 (913)
T ss_pred hCCCChhhhhhHHhhhhH---HHHHHHHHHHHHHhCCchHHHHH----HHHhccChHHHHHHHHHHHHhccc-hHHHHHH
Confidence 223344444333332211 1112222222221 1222332 233344555566666666541111 1122334
Q ss_pred HhcCCChHHHHHHhcccC---CCchhHHHHHHHHHHhcCChHHHHHHhccCC--------CCCcchHHHHHHHHHHcCCH
Q 004644 212 YVELDDLDSAWKFFQKIP---EQNVVSWVTMLSGYARNGRMLEARRLFDQMP--------IRNVVAWNAMIAAYVQRGQI 280 (740)
Q Consensus 212 ~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~ 280 (740)
+.++.-++.|..++.++. |.++.+|..-...--.+|+.+...++.++-. .-+...|-.=...+-..|..
T Consensus 416 larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 445555666666655543 6666667666666666777666666665432 12333454445555555555
Q ss_pred HHHHHHHhhCC------CCChhhHHHHHHHHhhhCCHHHHHHHHhhCCCCchhHHHHHHHHHHhcCChhHHHHHHhhcCC
Q 004644 281 EEAARLFIEMP------ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT 354 (740)
Q Consensus 281 ~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 354 (740)
-.+..+....+ +.-..||..-...|.+.+.++-++.+|...+.-. +
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf----------------------------p 547 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF----------------------------P 547 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc----------------------------c
Confidence 54444444333 1234577788888888888888888887764322 2
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHccCCHHHHHHHHHhh--CCCCCeecHHHHHHH
Q 004644 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMVN---KDIVTWNTMIAGYAQIRQMDDAVKIFEEM--GKRRNTVSWNALISG 429 (740)
Q Consensus 355 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~li~~ 429 (740)
.+...|...+..--..|..++-..+|++++. .....|--....+...|++..|..++... -.+.+...|-.-+..
T Consensus 548 ~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKl 627 (913)
T KOG0495|consen 548 CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKL 627 (913)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 2333344433333334444444444444432 12233333333334444444444444433 111233334444444
Q ss_pred HHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHH
Q 004644 430 FLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNA 509 (740)
Q Consensus 430 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 509 (740)
-..+..++.|..+|.+... ..|+...|..-...---+++.++|.++++..++. ++.-...|..+...+-..++++.|
T Consensus 628 e~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~a 704 (913)
T KOG0495|consen 628 EFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMA 704 (913)
T ss_pred hhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHH
Confidence 4444444444444444322 2333333333333333345555555555554443 223345667777888888899999
Q ss_pred HHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhc
Q 004644 510 ELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVY 586 (740)
Q Consensus 510 ~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 586 (740)
++.|.... |..+..|-.+...-.+.|..-+|..++++..-.+ +-|...|...+..-.+.|..+.|..+..++.++
T Consensus 705 R~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe- 782 (913)
T KOG0495|consen 705 REAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE- 782 (913)
T ss_pred HHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 98887655 5566778888888888899999999999988764 445678899999999999999999999988875
Q ss_pred CCcCCcchHHHHhhhhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHH
Q 004644 587 AIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSN 666 (740)
Q Consensus 587 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 666 (740)
...+-..|..-|.+..+.++-..+.+.+++.. -|+.+..++...+.....++.|+.-|+++++.+|++..+|..+-.
T Consensus 783 -cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fyk 859 (913)
T KOG0495|consen 783 -CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYK 859 (913)
T ss_pred -CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHH
Confidence 33336678888888889998888888777654 455566666666777888999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHhhCCCccCCcccEEEEcCEE
Q 004644 667 MHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQI 704 (740)
Q Consensus 667 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~ 704 (740)
.+.+.|.-++-.+++++.....++ -|..|+.+...+
T Consensus 860 fel~hG~eed~kev~~~c~~~EP~--hG~~W~avSK~i 895 (913)
T KOG0495|consen 860 FELRHGTEEDQKEVLKKCETAEPT--HGELWQAVSKDI 895 (913)
T ss_pred HHHHhCCHHHHHHHHHHHhccCCC--CCcHHHHHhhhH
Confidence 999999999999999988766554 566677554433
No 25
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.81 E-value=3.9e-15 Score=152.29 Aligned_cols=592 Identities=14% Similarity=0.136 Sum_probs=303.7
Q ss_pred HhcCCChHHHHHHHHhccCC---CcccHHHHHHHHHcCCChHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCChhhHHH
Q 004644 87 YLHNDKVKEARELFDKMFRP---DLFSWALMITCYTRKGELEKARELFDLL--PNKEDTACWNAMVAGYAKIGNYNEAKK 161 (740)
Q Consensus 87 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~ 161 (740)
....|++++|.+++.++++. +...|..|+.+|-..||.+++...+-.+ .+|.+...|..+.....+.|.++.|+-
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 33346666666666665542 2345566666666666666665555444 445555666666666666666666666
Q ss_pred HHhcCCCCCcccHHH---HHHHHHhCCChHHHHHHHHhcccCCc--------chHHHHHHHHhcCCChHHHHHHhcccCC
Q 004644 162 LLDAMPSKNIVSWNS---MLSGYTKNGEMHLASKFFEAMEERDV--------VSWNLMLDGYVELDDLDSAWKFFQKIPE 230 (740)
Q Consensus 162 ~~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 230 (740)
+|.+..+.++..|.. -...|-+.|+...|...|.++.+.++ ......++.+...++-+.|.+.+.....
T Consensus 229 cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 229 CYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 666555433333333 23455556666666666666554222 1222334445555555555555554431
Q ss_pred -----CchhHHHHHHHHHHhcCChHHHHHHhccCCC--------------------------C-----Ccch-HHHHHHH
Q 004644 231 -----QNVVSWVTMLSGYARNGRMLEARRLFDQMPI--------------------------R-----NVVA-WNAMIAA 273 (740)
Q Consensus 231 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------------~-----~~~~-~~~l~~~ 273 (740)
-+...++.++..+.+...++.|......... + +... ...+.-.
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 1222344555555555555555444322210 0 1111 1111112
Q ss_pred HHHcCCHHHHHHHHhhCCC----CChhhHHHHHHHHhhhCCHHHHHHHHhhCCCC----chhHHHHHHHHHHhcCChhHH
Q 004644 274 YVQRGQIEEAARLFIEMPE----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK----NIAAQTAMISGYVQNKRMDEA 345 (740)
Q Consensus 274 ~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A 345 (740)
..+.+...+++..|..-.. .++..+.-+..++...|++..|+.++..+... +..++..++.+|...|.+++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 2233344444433322221 23344555666666666666666666665432 234556666666666666666
Q ss_pred HHHHhhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHhcccCCH------------HHHHHHHHHHHccCCHHHHHHH
Q 004644 346 NQIFDKIG---THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDI------------VTWNTMIAGYAQIRQMDDAVKI 410 (740)
Q Consensus 346 ~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~A~~~ 410 (740)
.+.++++. |.+..+--.|...+.+.|+.++|.+.+..+..||. .........+.+.|+.++-..+
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 66666643 33444455556666667777777777766655442 1122334455555655543333
Q ss_pred HHhhC-------------------------CCCCeecHHHHHHHHHcCCChHHHH------HHHHHHHHCCCCCCHH--H
Q 004644 411 FEEMG-------------------------KRRNTVSWNALISGFLQNEFHLDAL------KIFVLMTQEGKKADHS--T 457 (740)
Q Consensus 411 ~~~~~-------------------------~~~~~~~~~~li~~~~~~~~~~~A~------~~~~~m~~~~~~p~~~--~ 457 (740)
-..|- .......-..++.+-.+.++..... ..+..-...|+.-+.. .
T Consensus 549 ~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel 628 (895)
T KOG2076|consen 549 ASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFEL 628 (895)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHH
Confidence 22220 0111111222222222222211111 1111111223332222 2
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHhCC-CCChh----HHHHHHHHhhccCCHHHHHHHhcccCCC-----C---cchH
Q 004644 458 LACALSACAHLAALQLGRQIHHLAIKSGY-VNDLF----VGNSLITMYAKCGRIQNAELLFKDADPV-----D---VISW 524 (740)
Q Consensus 458 ~~~~l~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~---~~~~ 524 (740)
+.-++...++.+..+.|..+...+..... ..+.. +-...+.+....+++..|...++.+... + ...|
T Consensus 629 ~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~ 708 (895)
T KOG2076|consen 629 FRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLW 708 (895)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34445566777777888777776665421 11221 2233444555667777777776665422 2 2456
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH--HHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhh
Q 004644 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV--TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDL 601 (740)
Q Consensus 525 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 601 (740)
|...+...+.|+-.--...+..+.. ..|+.. .......-....+.+..|...+-++.. ..|+ +-.--|++-+
T Consensus 709 n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~---~~pd~Pl~nl~lgla 783 (895)
T KOG2076|consen 709 NLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR---QNPDSPLINLCLGLA 783 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHHH---hCCCCcHHHHHHHHH
Confidence 6555555555544333344433332 233321 111112223456778888887776654 4566 3332333333
Q ss_pred hhc--cC--------ChHHHHHHHHhCC-C-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCC---------
Q 004644 602 LSR--AG--------RLDEAFEMVKGMK-I-KP--NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKT--------- 658 (740)
Q Consensus 602 ~~~--~g--------~~~~A~~~~~~~~-~-~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~--------- 658 (740)
+.. .+ ..-....+++... . .+ -..++..++.+|...|-+..|...|++++++.|.+.
T Consensus 784 fih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~d 863 (895)
T KOG2076|consen 784 FIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYD 863 (895)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCccc
Confidence 221 11 2334455554431 1 22 445778899999999999999999999999987542
Q ss_pred ---cchHHHHHHHHhcCCchHHHHHHHH
Q 004644 659 ---SCYALLSNMHAEAGRWDEVEKVRVS 683 (740)
Q Consensus 659 ---~~~~~l~~~~~~~g~~~~a~~~~~~ 683 (740)
.+-.+|.-+|-.+|+..-|.+++++
T Consensus 864 LrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 864 LRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 2456788899999999999988763
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=8.7e-17 Score=173.74 Aligned_cols=316 Identities=11% Similarity=0.037 Sum_probs=214.0
Q ss_pred HHHHHhcCChhHHHHHHhhc---CCCChhhHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHccCCHHH
Q 004644 333 ISGYVQNKRMDEANQIFDKI---GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN---KDIVTWNTMIAGYAQIRQMDD 406 (740)
Q Consensus 333 ~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 406 (740)
+..+.+.|++++|..+++.+ .+.+...+..++.+....|++++|+..|+++++ .++..+..+...+...|++++
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~ 128 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYAT 128 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Confidence 33444555555555555443 233344444444444555555555555555543 223444445555555555555
Q ss_pred HHHHHHhh-C-CCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHh
Q 004644 407 AVKIFEEM-G-KRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS 484 (740)
Q Consensus 407 A~~~~~~~-~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~ 484 (740)
|...++++ . .+.+...+..++..+...|+.++|...++.+ ...
T Consensus 129 Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~-----------------------------------~~~ 173 (656)
T PRK15174 129 VADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQ-----------------------------------AQE 173 (656)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHH-----------------------------------HHh
Confidence 55555554 1 1223334444444455555555555444443 333
Q ss_pred CCCCChhHHHHHHHHhhccCCHHHHHHHhcccCCC----CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHH
Q 004644 485 GYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV----DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD-PVTF 559 (740)
Q Consensus 485 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~ 559 (740)
... +...+..+ ..+...|++++|...++.+.+. +...+..++..+...|++++|+..|+++.+. .|+ ...+
T Consensus 174 ~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~ 249 (656)
T PRK15174 174 VPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALR 249 (656)
T ss_pred CCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHH
Confidence 221 12222222 2367789999999999876532 2334455677888999999999999999985 454 4577
Q ss_pred HHHHHhhcccchHHH----HHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 004644 560 IGVLSACSHVGLVDG----GLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPN-AGIWGTLLG 632 (740)
Q Consensus 560 ~~ll~a~~~~g~~~~----a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~ 632 (740)
..+..++...|++++ |+..|+++.+ +.|+ ...+..++.++.+.|++++|...++.. ...|+ ...+..+..
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 778888999999986 8999999876 5676 778899999999999999999998775 45564 456788888
Q ss_pred HHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 004644 633 ACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQ 690 (740)
Q Consensus 633 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 690 (740)
++...|++++|+..++++++.+|+++..+..++.++...|++++|...++...+..++
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 8999999999999999999999999877777899999999999999999998776554
No 27
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=9.9e-16 Score=169.45 Aligned_cols=163 Identities=10% Similarity=-0.005 Sum_probs=106.1
Q ss_pred HHHHhhccCCHHHHHHHhcccCCCC-------cchHHHHHHHHHhcCChHHHHHHHHHHHHCC-----------CCCCh-
Q 004644 496 LITMYAKCGRIQNAELLFKDADPVD-------VISWNSLIAGYAINGNATEAIKLFEEMVMEG-----------VAPDP- 556 (740)
Q Consensus 496 l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-----------~~p~~- 556 (740)
+...|...|++++|+..|+++...+ ...+..+..++...|++++|+++++++.... -.|+.
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 3455666666666666666543211 1234445556677777777777777776531 11232
Q ss_pred --HHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC-CCCCCH-HHHHHHH
Q 004644 557 --VTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPNA-GIWGTLL 631 (740)
Q Consensus 557 --~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~ 631 (740)
..+..+...+...|+.++|++.++.+... .|+ ...+..++.++...|++++|++.+++. ...|+. ..+..++
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a 434 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYN---APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQA 434 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 13344555677778888888888887653 444 667777888888888888888887665 455654 3555666
Q ss_pred HHHHhcCCHHHHHHHHHHhHccCCCCCcch
Q 004644 632 GACRMHQNIKLGRIAVEKLSELEPQKTSCY 661 (740)
Q Consensus 632 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 661 (740)
..+...|++++|+..++++++..|+++...
T Consensus 435 ~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 435 WTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 667777888888888888888888887543
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=2.5e-15 Score=162.43 Aligned_cols=439 Identities=12% Similarity=0.058 Sum_probs=234.3
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHhcCCCCCccc---HHHHHHHHHhCCChHHHHHHHHhcccCCcchHH-HH--HHHHh
Q 004644 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVS---WNSMLSGYTKNGEMHLASKFFEAMEERDVVSWN-LM--LDGYV 213 (740)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~l--~~~~~ 213 (740)
+.+...-+....+.|+++.|+..|++..+.++.. ...++..+...|+.++|+..+++...|++..+. .+ +..+.
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 3344444455566666666666666655332221 225555555666666666666666644332222 12 33444
Q ss_pred cCCChHHHHHHhcccC---CCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHH--cCCHHHHHHHHh
Q 004644 214 ELDDLDSAWKFFQKIP---EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ--RGQIEEAARLFI 288 (740)
Q Consensus 214 ~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~ 288 (740)
..|++++|+++++++. |.++.++..++..|...++.++|+..++++...++.....+..++.. .++..+|++.++
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 5555555555555554 44555666666666666777777777666664444322223333333 344444666666
Q ss_pred hCCC--C-ChhhHHHHHHHHhhhCCHHHHHHHHhhCCCCchhHHHHHHHHHHhcCChhHHHHHHhhcCCCChhhHHHHHH
Q 004644 289 EMPE--R-NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIK 365 (740)
Q Consensus 289 ~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~ 365 (740)
++.+ | +...+..+..++.+.|-...|.++..+- |+..+-.....
T Consensus 194 kll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~---------------------------------p~~f~~~~~~~ 240 (822)
T PRK14574 194 EAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKEN---------------------------------PNLVSAEHYRQ 240 (822)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC---------------------------------ccccCHHHHHH
Confidence 6553 2 3334444555555555555555444332 11110000000
Q ss_pred HHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHccCC---HHHHHHHHHhh----CCCCCeec-HHHHHHHHHcCCChH
Q 004644 366 GYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQ---MDDAVKIFEEM----GKRRNTVS-WNALISGFLQNEFHL 437 (740)
Q Consensus 366 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~----~~~~~~~~-~~~li~~~~~~~~~~ 437 (740)
=+.+.|.+..+-...++. ....+ .+.|+.-++.+ +..|.... |..
T Consensus 241 -----l~~~~~a~~vr~a~~~~~----------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~------------ 293 (822)
T PRK14574 241 -----LERDAAAEQVRMAVLPTR----------SETERFDIADKALADYQNLLTRWGKDPEAQADYQR------------ 293 (822)
T ss_pred -----HHHHHHHHHHhhcccccc----------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHH------------
Confidence 011222222222211100 00011 12233333332 11121111 100
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccC
Q 004644 438 DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD 517 (740)
Q Consensus 438 ~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 517 (740)
...--+-+....+....+...++.+...+.+.+..+-.++.++|...++.++|+.+|..+.
T Consensus 294 -------------------~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 294 -------------------ARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred -------------------HHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 0111222333444444444444444444444455566677777777777777777777653
Q ss_pred CC---------CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CCC--hH-HHHHHHHhhcccchHHH
Q 004644 518 PV---------DVISWNSLIAGYAINGNATEAIKLFEEMVMEGV-----------APD--PV-TFIGVLSACSHVGLVDG 574 (740)
Q Consensus 518 ~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~--~~-~~~~ll~a~~~~g~~~~ 574 (740)
.. +......|.-+|...+++++|..+++++.+.-. .|| -. .+..++..+...|++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 21 222245677788888888888888888877311 122 22 22334555677888888
Q ss_pred HHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhCC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004644 575 GLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGMK-IKPNAG-IWGTLLGACRMHQNIKLGRIAVEKLS 651 (740)
Q Consensus 575 a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~ 651 (740)
|++.++.+.. ..|. ......+++++...|++.+|.+.++... ..|+.. +....+.+....|++.+|....+.++
T Consensus 435 Ae~~le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 435 AQKKLEDLSS---TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 8888888865 3454 6777888888888888888888886653 456443 56666677777888888888888888
Q ss_pred ccCCCCCcc
Q 004644 652 ELEPQKTSC 660 (740)
Q Consensus 652 ~~~p~~~~~ 660 (740)
+..|+++..
T Consensus 512 ~~~Pe~~~~ 520 (822)
T PRK14574 512 SRSPEDIPS 520 (822)
T ss_pred hhCCCchhH
Confidence 888888753
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.76 E-value=1.1e-14 Score=149.19 Aligned_cols=536 Identities=11% Similarity=0.101 Sum_probs=306.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCChhhHHHHHhcC---CCCCcccHHHHHHHHHhCC
Q 004644 111 WALMITCYTRKGELEKARELFDLL--PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAM---PSKNIVSWNSMLSGYTKNG 185 (740)
Q Consensus 111 ~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~g 185 (740)
....++.....|++++|..++..+ ..|.....|..|+.+|-..|+.+++...+-.+ .+.|..-|..+.....+.|
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence 344455566679999999999988 66778899999999999999999998876543 3566778999999999999
Q ss_pred ChHHHHHHHHhcccCCcch---HHHHHHHHhcCCChHHHHHHhcccCCCch--------hHHHHHHHHHHhcCChHHHHH
Q 004644 186 EMHLASKFFEAMEERDVVS---WNLMLDGYVELDDLDSAWKFFQKIPEQNV--------VSWVTMLSGYARNGRMLEARR 254 (740)
Q Consensus 186 ~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~ 254 (740)
++++|.-.|.++.+.++.- ...-...|.+.|+...|..-|.++.+.++ ..-...+..+...++-+.|.+
T Consensus 222 ~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999998644433 34456688899999999998888873332 123344666777777788888
Q ss_pred HhccCCC-----CCcchHHHHHHHHHHcCCHHHHHHHHhhCCC----CChhh----------------------HHH---
Q 004644 255 LFDQMPI-----RNVVAWNAMIAAYVQRGQIEEAARLFIEMPE----RNPVS----------------------WTT--- 300 (740)
Q Consensus 255 ~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~----------------------~~~--- 300 (740)
.++.... -+...++.++..+.+...++.|......+.. +|..- +..
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 8877653 2445678888999999999988887766542 22111 110
Q ss_pred -HHHHHhhhCCHHHHHHHHhhCCC------CchhHHHHHHHHHHhcCChhHHHHHHhhcCCC----ChhhHHHHHHHHHH
Q 004644 301 -MIDGYVRIAKLDEARRLLDQMPY------KNIAAQTAMISGYVQNKRMDEANQIFDKIGTH----DVVCWNVMIKGYAQ 369 (740)
Q Consensus 301 -l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~ 369 (740)
+.-++.+....+....+...... .....+..++..|...|++.+|+.+|..+... +..+|-.++.+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 11111122222222222221111 12223344555555555555555555554311 33455555555555
Q ss_pred cCCHHHHHHHHHhcccCC---HHHHHHHHHHHHccCCHHHHHHHHHhhCCCCCeecHHHHHHHHHcCCChHHHHHHHHHH
Q 004644 370 CGRMDEAINLFRQMVNKD---IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLM 446 (740)
Q Consensus 370 ~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 446 (740)
.|.+++|++.|+.++..+ ...-.+|...+.+.|+.++|.+.++.+. .||... .
T Consensus 462 l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~-~~D~~~-----------------------~ 517 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII-NPDGRN-----------------------A 517 (895)
T ss_pred HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc-CCCccc-----------------------h
Confidence 555555555555554322 2223334445555555555555555542 111000 0
Q ss_pred HHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHh----------------------CCCCChhHHHHHHHHhhccC
Q 004644 447 TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS----------------------GYVNDLFVGNSLITMYAKCG 504 (740)
Q Consensus 447 ~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~----------------------g~~~~~~~~~~l~~~~~~~g 504 (740)
...+..|+..........+.+.|+.+.-..+...++.. +..........++.+-.+.+
T Consensus 518 e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~ 597 (895)
T KOG2076|consen 518 EACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKAT 597 (895)
T ss_pred hhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccC
Confidence 01112222222222222223333333221111111100 01111122222333333333
Q ss_pred CHHHHHHHhcc--------cCCCCcchH----HHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCh-H-H-HHHHHHhhc
Q 004644 505 RIQNAELLFKD--------ADPVDVISW----NSLIAGYAINGNATEAIKLFEEMVMEGVA--PDP-V-T-FIGVLSACS 567 (740)
Q Consensus 505 ~~~~A~~~~~~--------~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~~~~--p~~-~-~-~~~ll~a~~ 567 (740)
+.....+-... .......-| .-++.++++.+++++|+.+...+....+. ++. . . -...+.++.
T Consensus 598 ~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~ 677 (895)
T KOG2076|consen 598 DDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASL 677 (895)
T ss_pred chHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHH
Confidence 32222221111 111222223 44677889999999999999988775322 222 1 2 234456778
Q ss_pred ccchHHHHHHHHHHhhhhcCCc--CC-cchHHHHhhhhhccCChHHHHHHHHhC-CCCCCHHHHHHHHH--HHHhcCCHH
Q 004644 568 HVGLVDGGLKLFECMTEVYAIE--PL-VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPNAGIWGTLLG--ACRMHQNIK 641 (740)
Q Consensus 568 ~~g~~~~a~~~~~~~~~~~~~~--p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~--~~~~~g~~~ 641 (740)
..+++..|..+++.|...++.. |. ...|++......+.|+-.--..++..+ ...|+......++. -....+.+.
T Consensus 678 ~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~ 757 (895)
T KOG2076|consen 678 YARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFK 757 (895)
T ss_pred hcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchH
Confidence 8999999999999999864443 33 455676666666666555445555443 33333321111111 233567788
Q ss_pred HHHHHHHHhHccCCCCCcchHHHHHHHHh
Q 004644 642 LGRIAVEKLSELEPQKTSCYALLSNMHAE 670 (740)
Q Consensus 642 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 670 (740)
-|...+-+++...|++|-.-..+|-++..
T Consensus 758 ~Al~~y~ra~~~~pd~Pl~nl~lglafih 786 (895)
T KOG2076|consen 758 HALQEYMRAFRQNPDSPLINLCLGLAFIH 786 (895)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 89999999999999999877776665543
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=3.8e-16 Score=146.54 Aligned_cols=452 Identities=14% Similarity=0.113 Sum_probs=275.4
Q ss_pred HHHHHHHhCCChHHHHHHHHhccc----CCcc-hHHHHHHHHhcCCChHHHHHHhcccCC--C------chhHHHHHHHH
Q 004644 176 SMLSGYTKNGEMHLASKFFEAMEE----RDVV-SWNLMLDGYVELDDLDSAWKFFQKIPE--Q------NVVSWVTMLSG 242 (740)
Q Consensus 176 ~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~--~------~~~~~~~l~~~ 242 (740)
.|..-|..+....+|+..|+-+.+ ||.- .-..++..+.+..++.+|+++++.++. | .....+.++-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 344556666667777777776664 2321 122345567777777888887776651 1 12245556666
Q ss_pred HHhcCChHHHHHHhccCCC--CCcchHHHHHHHHHHcCCHHHHHHHHhhCCC----CChh--------hHHHHHHHHhhh
Q 004644 243 YARNGRMLEARRLFDQMPI--RNVVAWNAMIAAYVQRGQIEEAARLFIEMPE----RNPV--------SWTTMIDGYVRI 308 (740)
Q Consensus 243 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~--------~~~~l~~~~~~~ 308 (740)
+.+.|.+++|+..|+.+.+ |+..+-..|+-++..-|+.++-.+.|.+|.. +|.. .-..++.-..+.
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 7788888888888887653 5555545556666667777777777777762 1110 111122211111
Q ss_pred CCH--------HHHHHH---HhhCCCCchhHHHHHHHHHHhcCChhHHHHHHhhcC--CCChhhHHHHHHHHHHcCCHHH
Q 004644 309 AKL--------DEARRL---LDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIG--THDVVCWNVMIKGYAQCGRMDE 375 (740)
Q Consensus 309 ~~~--------~~a~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 375 (740)
..+ ..|+.. -.+++..-+.+..+.+ | +-+++.++.-. +.-...--.-..-|.+.|+++.
T Consensus 366 d~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g--~------dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 366 DHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAG--C------DWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcc--c------HHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 111 111111 1111111010000000 0 00111111000 0000000112234677888888
Q ss_pred HHHHHHhcccCCHHHH----HHHHHHHHc--cCCHHHHHHHHHhhC--CCCCeecHHHHHHHHHcCCChHHHHHHHHHHH
Q 004644 376 AINLFRQMVNKDIVTW----NTMIAGYAQ--IRQMDDAVKIFEEMG--KRRNTVSWNALISGFLQNEFHLDALKIFVLMT 447 (740)
Q Consensus 376 A~~~~~~~~~~~~~~~----~~l~~~~~~--~~~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 447 (740)
|++++.-..+.|..+- +.|...+.- -.++.+|...-+... .+-+......-......+|++++|.+.|++.+
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 8888777665544332 223333332 234555555544431 01111111112222345677777777777765
Q ss_pred HCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccC---CCCcchH
Q 004644 448 QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD---PVDVISW 524 (740)
Q Consensus 448 ~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 524 (740)
... .. ....+| .+.-.+.+.|++++|++.|-++. ..+..+.
T Consensus 518 ~nd----as-------------------------------c~ealf-niglt~e~~~~ldeald~f~klh~il~nn~evl 561 (840)
T KOG2003|consen 518 NND----AS-------------------------------CTEALF-NIGLTAEALGNLDEALDCFLKLHAILLNNAEVL 561 (840)
T ss_pred cCc----hH-------------------------------HHHHHH-HhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHH
Confidence 432 11 111111 22334667889999999887654 5677778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhh
Q 004644 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLS 603 (740)
Q Consensus 525 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 603 (740)
..+...|....+..+|++++.+.... ++.|+..+.-+...|-+.|+..+|.+++-.- |..-|. +++...|...|.
T Consensus 562 ~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyi 637 (840)
T KOG2003|consen 562 VQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYI 637 (840)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHH
Confidence 88899999999999999999887763 4445668888889999999999999887644 455666 888899999999
Q ss_pred ccCChHHHHHHHHhC-CCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCch
Q 004644 604 RAGRLDEAFEMVKGM-KIKPNAGIWGTLLGAC-RMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWD 675 (740)
Q Consensus 604 ~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 675 (740)
...-+++|+.+|++. -++|+.+-|..++..| ++.|++..|...++......|.+..+...|..+....|..+
T Consensus 638 dtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 638 DTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred hhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchh
Confidence 999999999999876 4789999999998887 57899999999999999999999999999999998888754
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.70 E-value=3.9e-12 Score=125.58 Aligned_cols=591 Identities=13% Similarity=0.131 Sum_probs=401.5
Q ss_pred CChhHHHHHHhhcc---CCCccchHHHHHHHHcCCChhHHHHHHhhCCC---CCcchHHHHHHHHhcCCChHHHHHHHHh
Q 004644 29 GRVEEAIKIFSQMS---QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQ---RNLVSWNSMIAGYLHNDKVKEARELFDK 102 (740)
Q Consensus 29 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 102 (740)
++...|+.++..+. +.+|..|.+-++.--..|.+..|+.+..+--+ .+.+.|..-++ ....+.|..+...
T Consensus 265 ~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiR----Lhp~d~aK~vvA~ 340 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIR----LHPPDVAKTVVAN 340 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHh----cCChHHHHHHHHH
Confidence 56677888888776 56778898888888889999999988765433 44455654433 3355567777666
Q ss_pred ccCCCcccHHHHHHHHHcCCChHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCChhhHHHHHhcCCCCCcccHHHHHHH
Q 004644 103 MFRPDLFSWALMITCYTRKGELEKARELFDLL--PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG 180 (740)
Q Consensus 103 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 180 (740)
+++..+.+-..-+.+.--..+...-.+++.+. ..|.++..|-..+ .....++|+-++.+..+--+.+ .-|-.+
T Consensus 341 Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAV----elE~~~darilL~rAveccp~s-~dLwlA 415 (913)
T KOG0495|consen 341 AVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAV----ELEEPEDARILLERAVECCPQS-MDLWLA 415 (913)
T ss_pred HHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHH----hccChHHHHHHHHHHHHhccch-HHHHHH
Confidence 65522222222222222223333334444444 2344555554433 3445555777776655321111 123334
Q ss_pred HHhCCChHHHHHHHHhccc---CCcchHHHHHHHHhcCCChHHHHHHhcccC--------CCchhHHHHHHHHHHhcCCh
Q 004644 181 YTKNGEMHLASKFFEAMEE---RDVVSWNLMLDGYVELDDLDSAWKFFQKIP--------EQNVVSWVTMLSGYARNGRM 249 (740)
Q Consensus 181 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~ 249 (740)
+.+..-|+.|..+++++.+ .++..|......-...|+.+...++..+.+ .-+..-|..=+..+-..|..
T Consensus 416 larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 4555566777777776664 456666666666666777777666666543 23444555556666666666
Q ss_pred HHHHHHhccCC------CCCcchHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHhhhCCHHHHHHHHhh
Q 004644 250 LEARRLFDQMP------IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE---RNPVSWTTMIDGYVRIAKLDEARRLLDQ 320 (740)
Q Consensus 250 ~~A~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 320 (740)
-.+..+...+. +.--.+|..-...|.+.+.++-|..+|....+ .+...|......--..|..+.-..++++
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqk 575 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQK 575 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 66666555443 12235788888888888888888888887775 3456677777777777888888888887
Q ss_pred CCCCchhHHHHHHHHHHhcCChhHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHH
Q 004644 321 MPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN---KDIVTWNTMIAG 397 (740)
Q Consensus 321 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 397 (740)
....- |.....|-.....+-..|+...|..++.++.+ .+...|-+-+..
T Consensus 576 av~~~----------------------------pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKl 627 (913)
T KOG0495|consen 576 AVEQC----------------------------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKL 627 (913)
T ss_pred HHHhC----------------------------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 64322 34455566666666777777777777777754 344667777777
Q ss_pred HHccCCHHHHHHHHHhh-CCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhhhhhhhHHHH
Q 004644 398 YAQIRQMDDAVKIFEEM-GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHST-LACALSACAHLAALQLGR 475 (740)
Q Consensus 398 ~~~~~~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~~l~~~~~~~~~~~a~ 475 (740)
-..+.+++.|..+|.+. ...++...|.--+..-...++.++|+.++++.++. -|+..- |..+-+.+.+.++++.|+
T Consensus 628 e~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR 705 (913)
T KOG0495|consen 628 EFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAR 705 (913)
T ss_pred hhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHH
Confidence 77788888888888776 44567777777777777788888888888776554 455443 334445566777788777
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 004644 476 QIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552 (740)
Q Consensus 476 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 552 (740)
..+..-.+. .+..+..|-.|.+.-.+.|.+-.|+.+|++.. |.+...|-..|..-.+.|+.+.|..+..+.++. +
T Consensus 706 ~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-c 783 (913)
T KOG0495|consen 706 EAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-C 783 (913)
T ss_pred HHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-C
Confidence 766654443 34456778888888899999999999999775 778899999999999999999999999998885 4
Q ss_pred CCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhC-CCCCCHH-HHHHH
Q 004644 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPNAG-IWGTL 630 (740)
Q Consensus 553 ~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l 630 (740)
+-+...|.--|...-+.++-......++.. +-++.....+..++-...++++|.+.|... ...||.. +|--+
T Consensus 784 p~sg~LWaEaI~le~~~~rkTks~DALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~f 857 (913)
T KOG0495|consen 784 PSSGLLWAEAIWLEPRPQRKTKSIDALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWF 857 (913)
T ss_pred CccchhHHHHHHhccCcccchHHHHHHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHH
Confidence 555567777777677766655555555433 344556677788888889999999998654 5667655 78888
Q ss_pred HHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHH
Q 004644 631 LGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSN 666 (740)
Q Consensus 631 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 666 (740)
...+..||.-+.-..++.+...-+|.....|...+.
T Consensus 858 ykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 858 YKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 888899999999999999999999999887776543
No 32
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=3.5e-14 Score=135.10 Aligned_cols=187 Identities=18% Similarity=0.235 Sum_probs=154.4
Q ss_pred HHHHHHHhhccCCHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHhhcc
Q 004644 493 GNSLITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP-VTFIGVLSACSH 568 (740)
Q Consensus 493 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~a~~~ 568 (740)
|--+..+|....+.++-.+.|+... |.|+.+|..-+..+...+++++|+.-|++.+. +.|+. ..|.-+..+..+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHH
Confidence 3345556777788888888887544 78889999999999999999999999999998 56765 478888888889
Q ss_pred cchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC-CCCCC---------HHHHHHHHHHHHhc
Q 004644 569 VGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPN---------AGIWGTLLGACRMH 637 (740)
Q Consensus 569 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---------~~~~~~l~~~~~~~ 637 (740)
.+.++++...|+..+++| |+ ++.|+..+..+..+++++.|.+.++.. ...|+ +.+..+++. .+=.
T Consensus 441 ~~k~~~~m~~Fee~kkkF---P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk 516 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKKF---PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWK 516 (606)
T ss_pred HHHHHHHHHHHHHHHHhC---CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchh
Confidence 999999999999999875 44 788999999999999999999999664 44554 222233322 2233
Q ss_pred CCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHh
Q 004644 638 QNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685 (740)
Q Consensus 638 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 685 (740)
+|+.+|+.+++++++++|..-.+|..|+.+-.+.|+.++|.++|++-.
T Consensus 517 ~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 517 EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999998754
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=5.3e-15 Score=138.95 Aligned_cols=445 Identities=14% Similarity=0.101 Sum_probs=246.7
Q ss_pred HHHHHHHHcCCChHHHHHHHhhC-C---CCCChhhHHHHHHHHHhcCChhhHHHHHhcCC----CCC----cccHHHHHH
Q 004644 112 ALMITCYTRKGELEKARELFDLL-P---NKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP----SKN----IVSWNSMLS 179 (740)
Q Consensus 112 ~~l~~~~~~~~~~~~a~~~~~~~-~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~~~~l~~ 179 (740)
..|..-|....-..+|+..++-+ . .+.....-..++++|.+...+.+|++.++..+ ..+ ....+.++.
T Consensus 205 ~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigv 284 (840)
T KOG2003|consen 205 FNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGV 284 (840)
T ss_pred HHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCe
Confidence 34455566666677777777766 1 22333344557778888888888888776543 211 124555666
Q ss_pred HHHhCCChHHHHHHHHhccc--CCcchHHHHHHHHhcCCChHHHHHHhcccC--C--------------CchhHHHH---
Q 004644 180 GYTKNGEMHLASKFFEAMEE--RDVVSWNLMLDGYVELDDLDSAWKFFQKIP--E--------------QNVVSWVT--- 238 (740)
Q Consensus 180 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~--------------~~~~~~~~--- 238 (740)
.+.+.|+++.|+..|+...+ ||..+-..++-++...|+-++..+.|+++. | |+....+.
T Consensus 285 tfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred eEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 77888888888888887764 666666677777778888888888887765 0 11111111
Q ss_pred --HHHHHHhcC--ChHHHHHHhccCC----CCCcch-HHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHhhhC
Q 004644 239 --MLSGYARNG--RMLEARRLFDQMP----IRNVVA-WNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIA 309 (740)
Q Consensus 239 --l~~~~~~~g--~~~~A~~~~~~~~----~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 309 (740)
.+.-+-+.+ +-++++-.--++. .|+... +...+...-.....+-|.++ -..-...+.+.|
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl-----------ei~ka~~~lk~~ 433 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL-----------EINKAGELLKNG 433 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh-----------hhhHHHHHHhcc
Confidence 111121111 1222222222222 222110 11111111111111111111 001122344556
Q ss_pred CHHHHHHHHhhCCCCchhHHHH----HHHHHHh--cCChhHHHHHHhhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHH
Q 004644 310 KLDEARRLLDQMPYKNIAAQTA----MISGYVQ--NKRMDEANQIFDKIGTH---DVVCWNVMIKGYAQCGRMDEAINLF 380 (740)
Q Consensus 310 ~~~~a~~~~~~~~~~~~~~~~~----l~~~~~~--~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~ 380 (740)
+++.|.+++.-..+.+..+..+ +-..+.. ..++.+|.++-+..... ++.....-.+.-..+|++++|.+.|
T Consensus 434 d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~y 513 (840)
T KOG2003|consen 434 DIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFY 513 (840)
T ss_pred CHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHH
Confidence 6666665555544433322222 1111111 22345555544433222 3333333334445678899999999
Q ss_pred HhcccCCHHHHHHH---HHHHHccCCHHHHHHHHHhh--CCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC-C
Q 004644 381 RQMVNKDIVTWNTM---IAGYAQIRQMDDAVKIFEEM--GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKA-D 454 (740)
Q Consensus 381 ~~~~~~~~~~~~~l---~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~ 454 (740)
++++..|...-.+| .-.+-..|+.++|++.|-++ ....+......+...|-...++..|++++.+. ..+.| |
T Consensus 514 keal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~--~slip~d 591 (840)
T KOG2003|consen 514 KEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA--NSLIPND 591 (840)
T ss_pred HHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh--cccCCCC
Confidence 98888776544433 34567788888888888776 22334555566667777777788888877654 23333 4
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccC--CCCcchHHHHHHHH-
Q 004644 455 HSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD--PVDVISWNSLIAGY- 531 (740)
Q Consensus 455 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~- 531 (740)
...++.+...+.+.|+-.+|.+.|-..-+ -++.++.+...|...|....-+++|+.+|++.. +|+..-|..|+..|
T Consensus 592 p~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 592 PAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCF 670 (840)
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 55556666667777777777666544333 245666777777777777777777777777543 67777777666544
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccch
Q 004644 532 AINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGL 571 (740)
Q Consensus 532 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~ 571 (740)
.+.|++++|+++|+..... ++.|..++..+++.|...|.
T Consensus 671 rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 4567777777777776654 44455566666666666553
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=4.5e-12 Score=120.42 Aligned_cols=406 Identities=13% Similarity=0.159 Sum_probs=309.9
Q ss_pred CccchHHHHHHHHcCCChhHHHHHHhhCCC---CCcchHHHHHHHHhcCCChHHHHHHHHhccC--CCc-ccHHHHHHHH
Q 004644 45 NTVTYNSMISAYAKNGRVNDARKLFEQMPQ---RNLVSWNSMIAGYLHNDKVKEARELFDKMFR--PDL-FSWALMITCY 118 (740)
Q Consensus 45 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~ 118 (740)
+...|...++.-..++++..|+.+|++++. ++...|...+.+-.++.....|..++++++. |-+ ..|.-.+..-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 445677777777888999999999999986 4556788889999999999999999999865 432 2455566666
Q ss_pred HcCCChHHHHHHHhhC-CCCCChhhHHHHHHHHHhcCChhhHHHHHhcCC--CCCcccHHHHHHHHHhCCChHHHHHHHH
Q 004644 119 TRKGELEKARELFDLL-PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP--SKNIVSWNSMLSGYTKNGEMHLASKFFE 195 (740)
Q Consensus 119 ~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 195 (740)
-..|++..|+++|+.. .-.|+..+|.+.+..-.+.+..+.|+.++++.+ .|++.+|.-...--.+.|+...|..+|+
T Consensus 152 E~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 6779999999999886 678999999999999999999999999999854 7999999988888899999999999999
Q ss_pred hccc------CCcchHHHHHHHHhcCCChHHHHHHhcccC---CCc--hhHHHHHHHHHHhcCChH---HHHHHhccC--
Q 004644 196 AMEE------RDVVSWNLMLDGYVELDDLDSAWKFFQKIP---EQN--VVSWVTMLSGYARNGRML---EARRLFDQM-- 259 (740)
Q Consensus 196 ~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~--~~~~~~l~~~~~~~g~~~---~A~~~~~~~-- 259 (740)
.+.+ .+...+.+.+..-..+..++.|..+|+-++ |.+ ...+..+...--+.|+.. +++---+++
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 9875 223445566666667788999999998876 333 345555555544555544 443332332
Q ss_pred ---C---CCCcchHHHHHHHHHHcCCHHHHHHHHhhCCC--CCh--------hhHHH---HHHHHhhhCCHHHHHHHHhh
Q 004644 260 ---P---IRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE--RNP--------VSWTT---MIDGYVRIAKLDEARRLLDQ 320 (740)
Q Consensus 260 ---~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~--------~~~~~---l~~~~~~~~~~~~a~~~~~~ 320 (740)
. +-|-.+|-..+..-...|+.+...++|++.+. |.. +.|.- .+-.-....+.+.+.++++.
T Consensus 312 E~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~ 391 (677)
T KOG1915|consen 312 EKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQA 391 (677)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2 23567888888888888999999999999873 111 11211 11222356788888888877
Q ss_pred CCC----Cch---hHHHHHHHHHHhcCChhHHHHHHhhcC--CCChhhHHHHHHHHHHcCCHHHHHHHHHhcccC---CH
Q 004644 321 MPY----KNI---AAQTAMISGYVQNKRMDEANQIFDKIG--THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK---DI 388 (740)
Q Consensus 321 ~~~----~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~ 388 (740)
.++ ..+ ..+...+....++.++..|.+++.... .|-..++...|..-.+.++++.+..+|++.++- |.
T Consensus 392 ~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c 471 (677)
T KOG1915|consen 392 CLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENC 471 (677)
T ss_pred HHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhh
Confidence 543 222 244556677788999999999998753 456678888899999999999999999999874 45
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHhhCCCCC----eecHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 004644 389 VTWNTMIAGYAQIRQMDDAVKIFEEMGKRRN----TVSWNALISGFLQNEFHLDALKIFVLMTQEG 450 (740)
Q Consensus 389 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 450 (740)
.+|......-...|+.+.|..+|+-....|. ...|.+.|+.-...|.+++|..+|+++++..
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 6787788888889999999999998855553 4568888888889999999999999988764
No 35
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.63 E-value=1e-11 Score=123.96 Aligned_cols=591 Identities=16% Similarity=0.173 Sum_probs=344.3
Q ss_pred HHHHHHHHcCCChhHHHHHHhhCCCCCcchHHHHHHHHhcCCChHHHHHHHHh--ccCCCcccHHHHHHHHHcCCChHHH
Q 004644 50 NSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDK--MFRPDLFSWALMITCYTRKGELEKA 127 (740)
Q Consensus 50 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a 127 (740)
.+..+++...|+-+.|-++-+ .+... ..-++.|.+.|.+.+|...... .+..|......+..++.+..-+++|
T Consensus 593 ~sy~q~l~dt~qd~ka~elk~----sdgd~-laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydka 667 (1636)
T KOG3616|consen 593 RSYLQALMDTGQDEKAAELKE----SDGDG-LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKA 667 (1636)
T ss_pred HHHHHHHHhcCchhhhhhhcc----ccCcc-HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhh
Confidence 345556666677776665422 22222 3456788899988887765432 2345666666666777777777778
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHhcCCCCCcccH-HHHHHHHHhCCChHHHHHHHHhcccCCcchHH
Q 004644 128 RELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSW-NSMLSGYTKNGEMHLASKFFEAMEERDVVSWN 206 (740)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 206 (740)
-.+|+++.++. .-+..|-+-.-+.+|+++-+-.-+..+++. ...+..+.+.|+++.|+..|-++. ...
T Consensus 668 gdlfeki~d~d------kale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~ 736 (1636)
T KOG3616|consen 668 GDLFEKIHDFD------KALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLI 736 (1636)
T ss_pred hhHHHHhhCHH------HHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHH
Confidence 77887775422 223333333345566665543333233322 233455667788888888776652 233
Q ss_pred HHHHHHhcCCChHHHHHHhcccCCCch--hHHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCCHHHHH
Q 004644 207 LMLDGYVELDDLDSAWKFFQKIPEQNV--VSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAA 284 (740)
Q Consensus 207 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 284 (740)
..+.+......|.+|+.+++.+...+. ..|..+...|+..|+++.|.++|.+. ..++..|.+|.+.|+|+.|.
T Consensus 737 kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHH
Confidence 345566777889999999988874433 35777888999999999999999764 45677889999999999999
Q ss_pred HHHhhCCCCC--hhhHHHHHHHHhhhCCHHHHHHHHhhCCCCchhHHHHHHHHHHhcCChhHHHHHHhhcCCC-ChhhHH
Q 004644 285 RLFIEMPERN--PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTH-DVVCWN 361 (740)
Q Consensus 285 ~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~ 361 (740)
++-.+...|. ...|.+-..-+-..|++.+|.+++-.+...+. .+.+|-+.|..++.+++.++-.+. -..+..
T Consensus 812 kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~ 886 (1636)
T KOG3616|consen 812 KLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHK 886 (1636)
T ss_pred HHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHH
Confidence 9998887664 34566666668889999999998877655442 357888888888888888876543 235667
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHccCCHHHHHHHHHhhCCCCCeecHHHHHHHHHcCCChHHHHH
Q 004644 362 VMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALK 441 (740)
Q Consensus 362 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 441 (740)
.+..-|...|++..|...|-++- -|.+-+.+|...+-+++|.++-+.-+ ..| .-..+.....+.--.+.|..
T Consensus 887 ~f~~e~e~~g~lkaae~~flea~-----d~kaavnmyk~s~lw~dayriakteg-g~n--~~k~v~flwaksiggdaavk 958 (1636)
T KOG3616|consen 887 HFAKELEAEGDLKAAEEHFLEAG-----DFKAAVNMYKASELWEDAYRIAKTEG-GAN--AEKHVAFLWAKSIGGDAAVK 958 (1636)
T ss_pred HHHHHHHhccChhHHHHHHHhhh-----hHHHHHHHhhhhhhHHHHHHHHhccc-ccc--HHHHHHHHHHHhhCcHHHHH
Confidence 78888899999999988886643 36677888888888888888776542 111 11222333334434455666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccCCCCc
Q 004644 442 IFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV 521 (740)
Q Consensus 442 ~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 521 (740)
++.+. | .+...+.-.+..+.++.|..+-....+... ..+...+...+...|++++|-+-+-+..+.|.
T Consensus 959 llnk~---g------ll~~~id~a~d~~afd~afdlari~~k~k~---~~vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 959 LLNKH---G------LLEAAIDFAADNCAFDFAFDLARIAAKDKM---GEVHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred HHHhh---h------hHHHHhhhhhcccchhhHHHHHHHhhhccC---ccchhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 65532 2 122223344556677777776666555432 22333455566788999999877766553332
Q ss_pred --chHHHHH-----HHHHhcC-ChHHHHHHHHHH--------HHCCCCCChH--HHHHHHHhhcccchHHHHHHHHHHhh
Q 004644 522 --ISWNSLI-----AGYAING-NATEAIKLFEEM--------VMEGVAPDPV--TFIGVLSACSHVGLVDGGLKLFECMT 583 (740)
Q Consensus 522 --~~~~~l~-----~~~~~~g-~~~~A~~~~~~m--------~~~~~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~ 583 (740)
.+|...+ .-+.+.| ++++|.++|-.= ......|+.. .+..-.+.....|+..+|..++-+.
T Consensus 1027 ynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllra- 1105 (1636)
T KOG3616|consen 1027 YNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRA- 1105 (1636)
T ss_pred ccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeec-
Confidence 2332211 1123344 455555544210 0000122211 2222223333344444444433222
Q ss_pred hhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHhHccCCCCCcchH
Q 004644 584 EVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLG-RIAVEKLSELEPQKTSCYA 662 (740)
Q Consensus 584 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~~p~~~~~~~ 662 (740)
-+|++ ..+.|...+.|..|+.+.+..- |.. .+.- ++.-+..++........++
T Consensus 1106 ----nkp~i-----~l~yf~e~~lw~dalri~kdyl--p~q---------------~a~iqeeyek~~~k~gargvd~fv 1159 (1636)
T KOG3616|consen 1106 ----NKPDI-----ALNYFIEAELWPDALRIAKDYL--PHQ---------------AAAIQEEYEKEALKKGARGVDGFV 1159 (1636)
T ss_pred ----CCCch-----HHHHHHHhccChHHHHHHHhhC--hhH---------------HHHHHHHHHHHHHhccccccHHHH
Confidence 12321 1222334444444444443321 100 0111 1222233444455566677
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhhCC--CccCCcccEEEEcCEEEEEecCCCC
Q 004644 663 LLSNMHAEAGRWDEVEKVRVSMEGSG--AQKQPGCSWIEVKNQIHTFLSGDPK 713 (740)
Q Consensus 663 ~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~f~~~~~~ 713 (740)
.-+.-+.++|+|.+|...+-++.+.. -.-....+|..-..-+-.|..||.+
T Consensus 1160 aqak~weq~gd~rkav~~~lkinrdst~nd~l~e~~~~kaadl~ikfl~~d~n 1212 (1636)
T KOG3616|consen 1160 AQAKEWEQAGDWRKAVDALLKINRDSTDNDALAEHCTEKAADLSIKFLMGDEN 1212 (1636)
T ss_pred HHHHHHHhcccHHHHHHHHhhhccCCCCcHHHHHHHHHHHHhhhhhhcCCccc
Confidence 77888888888888888776663221 1112222333333334456666653
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=3.6e-12 Score=121.04 Aligned_cols=419 Identities=13% Similarity=0.138 Sum_probs=289.6
Q ss_pred HhhhCCHHHHHHHHhhCCC---CchhHHHHHHHHHHhcCChhHHHHHHhhcC---CCChhhHHHHHHHHHHcCCHHHHHH
Q 004644 305 YVRIAKLDEARRLLDQMPY---KNIAAQTAMISGYVQNKRMDEANQIFDKIG---THDVVCWNVMIKGYAQCGRMDEAIN 378 (740)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~ 378 (740)
-..++++..|..++++.+. .++..+...+.+-.++..+..|..++++.. |.-...|--.+.+-...|++..|.+
T Consensus 83 Eesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 3344445555555555442 234444455555555555555665555532 3333456666667777788888888
Q ss_pred HHHhcc--cCCHHHHHHHHHHHHccCCHHHHHHHHHhh-CCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHC-CC-CC
Q 004644 379 LFRQMV--NKDIVTWNTMIAGYAQIRQMDDAVKIFEEM-GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE-GK-KA 453 (740)
Q Consensus 379 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~-~p 453 (740)
+|++-. +|+...|.+.+..-.+-+.++.|..++++. ...|++.+|-.....-.++|+...|..+|...... |. .-
T Consensus 163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 887775 477788888888777778888888888776 45677777877777777788888887777765543 21 11
Q ss_pred CHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCC-ChhHHHHHHHHhhccCCHHHHHHHh--------cccC---CCCc
Q 004644 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN-DLFVGNSLITMYAKCGRIQNAELLF--------KDAD---PVDV 521 (740)
Q Consensus 454 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~--------~~~~---~~~~ 521 (740)
+...+.+...--..+..++.|.-++..++..-... ...+|..+...--+-|+........ +.+. |-|-
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nY 322 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNY 322 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCc
Confidence 12233333333345677888888888888753222 1445555555555556644443332 2222 5677
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH--H-----HHHHHHhh---cccchHHHHHHHHHHhhhhcCCcCC
Q 004644 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV--T-----FIGVLSAC---SHVGLVDGGLKLFECMTEVYAIEPL 591 (740)
Q Consensus 522 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~-----~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~~~p~ 591 (740)
.+|--.+..-...|+.+...++|++.+.. ++|-.. . |.-+=.+| ....+++.++++|+..++ +-|-
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~---lIPH 398 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD---LIPH 398 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---hcCc
Confidence 88888888888899999999999999985 677321 2 22222233 347899999999999886 4454
Q ss_pred -cchHH----HHhhhhhccCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHH
Q 004644 592 -VEHYA----CMIDLLSRAGRLDEAFEMV-KGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLS 665 (740)
Q Consensus 592 -~~~~~----~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 665 (740)
.-++. ..+....|+-++..|.+++ ..++.-|..-++...+..-.+.++++....++++.++..|.+..+|...+
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kya 478 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYA 478 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHH
Confidence 33444 3444456889999999998 44566788888888887777889999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHhhCCCccCCcccEEEEcCEEEEEecCCCCCCChHHHHHHHHHHHHHh
Q 004644 666 NMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQI 731 (740)
Q Consensus 666 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~ 731 (740)
.+-...|++|.|..+|+...+......|..-|- .--.|......+..+..+|..|-...+..
T Consensus 479 ElE~~LgdtdRaRaifelAi~qp~ldmpellwk----aYIdFEi~~~E~ekaR~LYerlL~rt~h~ 540 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQPALDMPELLWK----AYIDFEIEEGEFEKARALYERLLDRTQHV 540 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH----HhhhhhhhcchHHHHHHHHHHHHHhcccc
Confidence 999999999999999999988777666665554 33357777777888888888877665443
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=1e-15 Score=149.15 Aligned_cols=214 Identities=20% Similarity=0.167 Sum_probs=113.4
Q ss_pred hhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccC--CCCcchHHHHHHHHHhcCChHHHHHHH
Q 004644 467 HLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD--PVDVISWNSLIAGYAINGNATEAIKLF 544 (740)
Q Consensus 467 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 544 (740)
..++.+.|...+..+...+.. ++..+..++.. ...++.++|.+++...- .+++..+..++..+...|+++++.+++
T Consensus 56 ~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l 133 (280)
T PF13429_consen 56 SLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELL 133 (280)
T ss_dssp ----------------------------------------------------------------H-HHHTT-HHHHHHHH
T ss_pred ccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHH
Confidence 344444444444444443322 34445556655 67788888888887653 456677888889999999999999999
Q ss_pred HHHHHCC-CCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhCC--C
Q 004644 545 EEMVMEG-VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGMK--I 620 (740)
Q Consensus 545 ~~m~~~~-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 620 (740)
+.+.... .+++...|..+...+.+.|+.++|++.|+++.+ ..|+ ......++..+...|+.+++.++++... .
T Consensus 134 ~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 134 EKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp HHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 9987643 345566778888889999999999999999987 4676 7778889999999999999888776652 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHh
Q 004644 621 KPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685 (740)
Q Consensus 621 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 685 (740)
++|+..|..+..++...|+.+.|...++++++..|+|+.....++.++...|+.++|.++++...
T Consensus 211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred cCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34666889999999999999999999999999999999999999999999999999999988664
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=2.9e-12 Score=121.51 Aligned_cols=326 Identities=11% Similarity=0.079 Sum_probs=230.6
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHccCCHHHHHHHHHhhCCCCCeecHHHHHHHHHcCC
Q 004644 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434 (740)
Q Consensus 355 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~ 434 (740)
.|+..+-..+..+.+.|....|+..|...+..-|..|.+......-..+.+.+..+...+........---+..++....
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 35555555666677888888888888888776676676666655555555554444333321111111111334455555
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCC--CCChhHHHHHHHHhhccCCHHH-HHH
Q 004644 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGY--VNDLFVGNSLITMYAKCGRIQN-AEL 511 (740)
Q Consensus 435 ~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~-A~~ 511 (740)
..++++.-.......|..-+...-+....+.-...+++.|..+|+.+.+... -.|..+|..++-.-..+.++.- |..
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 7777777777777777665555555555555567788888888888888732 1245556554433222222222 222
Q ss_pred HhcccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcC
Q 004644 512 LFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP-VTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP 590 (740)
Q Consensus 512 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 590 (740)
++ .+.+--+.|...+++-|...++.++|+..|++.++. .|.. ..|+.+..-|....+...|++.|+++++ +.|
T Consensus 322 v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd---i~p 395 (559)
T KOG1155|consen 322 VS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD---INP 395 (559)
T ss_pred HH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---cCc
Confidence 22 233334456667778888889999999999999884 5654 4677777888888999999999999875 666
Q ss_pred C-cchHHHHhhhhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHH
Q 004644 591 L-VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKP-NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNM 667 (740)
Q Consensus 591 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 667 (740)
. -..|-.++.+|.-.+...-|+-+|++. ..+| |+..|.+|+..|.+-++.++|+..+.+++....-+..++..||++
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakL 475 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKL 475 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 5 778889999999999999999888765 5677 677999999999999999999999999999988888999999999
Q ss_pred HHhcCCchHHHHHHHHHhh
Q 004644 668 HAEAGRWDEVEKVRVSMEG 686 (740)
Q Consensus 668 ~~~~g~~~~a~~~~~~~~~ 686 (740)
|.+.++.++|...+++-.+
T Consensus 476 ye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 9999999999999887654
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=1.6e-13 Score=136.36 Aligned_cols=274 Identities=17% Similarity=0.083 Sum_probs=125.7
Q ss_pred CHHHHHHHHHhhCC-CCCee-cHHHHHHHHHcCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHhhhhhhhHHHHHHH
Q 004644 403 QMDDAVKIFEEMGK-RRNTV-SWNALISGFLQNEFHLDALKIFVLMTQEGK--KADHSTLACALSACAHLAALQLGRQIH 478 (740)
Q Consensus 403 ~~~~A~~~~~~~~~-~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~~l~~~~~~~~~~~a~~~~ 478 (740)
+..+|...|..+.. .+|+. ....+..+|...+++++|..+|+...+... .-+...|.++|-..-+.-.+ ..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~L----s~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVAL----SYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHH----HHH
Confidence 45667777766521 22222 223355666667777777777766654321 11333444444332211110 011
Q ss_pred HHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 004644 479 HLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV---DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555 (740)
Q Consensus 479 ~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 555 (740)
..-.-.--+..+.+|.++.+.|.-+++.+.|++.|++..+. ...+|+.++.-+.....+|.|...|+..+. +.|.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 11000111233445555555555555555555555544422 223444444444444555555555555443 3333
Q ss_pred hH-HHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 004644 556 PV-TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKP-NAGIWGTLL 631 (740)
Q Consensus 556 ~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 631 (740)
.. .|-++...|.+.++++.|.-.|+.+. .++|. .....+++..+.+.|+.++|+++++.. ..+| |+..-.--+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 32 44444445555555555555555543 24454 333444445555555555555555443 2222 222222223
Q ss_pred HHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHh
Q 004644 632 GACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685 (740)
Q Consensus 632 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 685 (740)
..+...+++++|...+|++-++.|++...|..+|.+|-+.|+.+.|+.-|.-+.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 333344555555555555555555555555555555555555555555444333
No 40
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.59 E-value=4.9e-10 Score=112.31 Aligned_cols=190 Identities=14% Similarity=0.229 Sum_probs=104.3
Q ss_pred HHHHHhcCChhhHHHHHhcCCCCCcc--cHHHHHHHHHhCCChHHHHHHHHhcccCCcchHHHHHHHHhcCCChHHHHHH
Q 004644 147 VAGYAKIGNYNEAKKLLDAMPSKNIV--SWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKF 224 (740)
Q Consensus 147 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 224 (740)
+.+......+.+|+.+++.+...++. .|..+...|...|+++.|.++|.+. ..+...+.+|.+.|.|+.|.++
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHHHH
Confidence 44445556666666666665543332 3445555666666666666666554 2244455666666666666666
Q ss_pred hcccCCC--chhHHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCCHHHHHHHHhhCCC-CChhhHHHH
Q 004644 225 FQKIPEQ--NVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE-RNPVSWTTM 301 (740)
Q Consensus 225 ~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l 301 (740)
-.+...| ....|..-..-.-++|++.+|.+++-.+..|+. .|.+|-+.|..+..+++..+-.. .-..|...+
T Consensus 814 a~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f 888 (1636)
T KOG3616|consen 814 AEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHF 888 (1636)
T ss_pred HHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHH
Confidence 6655522 223344444555566666666666666655543 35566666666666666555432 122344445
Q ss_pred HHHHhhhCCHHHHHHHHhhCCCCchhHHHHHHHHHHhcCChhHHHHHHhh
Q 004644 302 IDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDK 351 (740)
Q Consensus 302 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 351 (740)
..-+...|++..|..-|-+.. .+.+.+++|...+-+++|-++-+.
T Consensus 889 ~~e~e~~g~lkaae~~flea~-----d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 889 AKELEAEGDLKAAEEHFLEAG-----DFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred HHHHHhccChhHHHHHHHhhh-----hHHHHHHHhhhhhhHHHHHHHHhc
Confidence 555666666666665554432 122344555555556665555443
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=8.5e-12 Score=118.42 Aligned_cols=319 Identities=13% Similarity=0.110 Sum_probs=161.6
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCCHHHHHHHHhhCCCCCh-hhHHHHHHHHhhh
Q 004644 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNP-VSWTTMIDGYVRI 308 (740)
Q Consensus 230 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~ 308 (740)
..|+..+...+..+-+.|....|+..|......-+..|.+-.....-.-+.+.+..+-..+...+. ..--.+..++...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 345555555666666777777777777766655555555544332222222222222111111100 0011122333333
Q ss_pred CCHHHHHHHHhhCCCCchhHHHHHHHHHHhcCChhHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcccCC-
Q 004644 309 AKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD- 387 (740)
Q Consensus 309 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 387 (740)
...+++.+-.+.....|. +.+...-+....+.....++++|+.+|+++.+.|
T Consensus 241 ~q~~e~~~k~e~l~~~gf---------------------------~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDP 293 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGF---------------------------PNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDP 293 (559)
T ss_pred HHHHHHHHHHHHHHhccC---------------------------CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence 344444443333322222 3344444555555666677888888888777643
Q ss_pred -----HHHHHHHHHHHHccCCHH-HHHHHHHhhCCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004644 388 -----IVTWNTMIAGYAQIRQMD-DAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461 (740)
Q Consensus 388 -----~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~ 461 (740)
..+|+.++..-..+.... -|..+++-= +-.+.|.-.+..-|.-.+++++|+..|++.++.+ |
T Consensus 294 YRl~dmdlySN~LYv~~~~skLs~LA~~v~~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p-------- 361 (559)
T KOG1155|consen 294 YRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--P-------- 361 (559)
T ss_pred CcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC--c--------
Confidence 345555443322211111 122222111 1122333334444444555555555555544432 1
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChH
Q 004644 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNAT 538 (740)
Q Consensus 462 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 538 (740)
....+|+.++.-|....+...|.+-++... |.|-..|..++.+|...+.+.
T Consensus 362 --------------------------~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~ 415 (559)
T KOG1155|consen 362 --------------------------KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHF 415 (559)
T ss_pred --------------------------chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchH
Confidence 122334444445555555555555555432 556666777777777777777
Q ss_pred HHHHHHHHHHHCCCCCC-hHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHh
Q 004644 539 EAIKLFEEMVMEGVAPD-PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKG 617 (740)
Q Consensus 539 ~A~~~~~~m~~~~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 617 (740)
=|+-.|++... .+|+ ...|.++..+|.+.++.++|+..|.+...- -..+...+..++++|.+.++.++|...+.+
T Consensus 416 YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~dte~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 416 YALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--GDTEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred HHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--cccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 77777777766 3453 446677777777777777777777766552 222345566677777777777776655543
No 42
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=4.4e-12 Score=123.55 Aligned_cols=254 Identities=14% Similarity=0.032 Sum_probs=182.9
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCH
Q 004644 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI 506 (740)
Q Consensus 427 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~ 506 (740)
..-+...+++.+...++....+.. ++....+..-+..+...|+...-..+-..+++ ..+....+|-+++..|.-.|+.
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~-~yP~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVD-LYPSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHH-hCCCCCcchhhHHHHHHHhcCc
Confidence 334444555555555555544332 22222222222233333333332222222222 2355677888888888888999
Q ss_pred HHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhh
Q 004644 507 QNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMT 583 (740)
Q Consensus 507 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 583 (740)
.+|++.|.+.. +.-...|-..+.+|+-.|..++|+..|..+-+. ++-....+..+.--|.+.+..+.|.++|.++.
T Consensus 329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999766 444568999999999999999999999988774 23333345555666888999999999999886
Q ss_pred hhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHcc
Q 004644 584 EVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGMK--------IKP-NAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653 (740)
Q Consensus 584 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 653 (740)
++.|+ +-.++-++-+....+.+.+|..+|+... .++ -..+|+.|+.+|++.+.+++|+..+++++.+
T Consensus 408 ---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 408 ---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred ---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 56776 6667777777888899999998886541 112 2335888999999999999999999999999
Q ss_pred CCCCCcchHHHHHHHHhcCCchHHHHHHHHHhh
Q 004644 654 EPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEG 686 (740)
Q Consensus 654 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 686 (740)
.|.++.+|..+|-+|.-.|+.+.|.+.+.+..-
T Consensus 485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999998887653
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=2.4e-13 Score=135.14 Aligned_cols=276 Identities=19% Similarity=0.189 Sum_probs=192.7
Q ss_pred ChhHHHHHHhhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHhccc------CCHHHHHHHHHHHHccCCHH-HHHHH
Q 004644 341 RMDEANQIFDKIG---THDVVCWNVMIKGYAQCGRMDEAINLFRQMVN------KDIVTWNTMIAGYAQIRQMD-DAVKI 410 (740)
Q Consensus 341 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~-~A~~~ 410 (740)
+..+|...|.++. .....+...++.+|...+++++|..+|+.+.+ .+..+|.+.+.-+-+.=... -|..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 4556666666632 11234455566666666666666666666643 34455555554432211110 11111
Q ss_pred HHhhCCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCCh
Q 004644 411 FEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490 (740)
Q Consensus 411 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 490 (740)
.+.. +..+.+|-++..+|.-+++++.|++.|++..+.. +...
T Consensus 414 i~~~--~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld------------------------------------p~fa 455 (638)
T KOG1126|consen 414 IDTD--PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD------------------------------------PRFA 455 (638)
T ss_pred HhhC--CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC------------------------------------Cccc
Confidence 1211 3345566666666666666666666665544321 1256
Q ss_pred hHHHHHHHHhhccCCHHHHHHHhcccCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHhh
Q 004644 491 FVGNSLITMYAKCGRIQNAELLFKDADPVD---VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD-PVTFIGVLSAC 566 (740)
Q Consensus 491 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~a~ 566 (740)
..|+.+..-+....++|.|...|+.....| -.+|..++..|.+.++++.|.-.|+++.+ +.|. .+....+...+
T Consensus 456 YayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~ 533 (638)
T KOG1126|consen 456 YAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQ 533 (638)
T ss_pred hhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHH
Confidence 778888888888889999999999877544 45667788999999999999999999998 5665 55667777788
Q ss_pred cccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCCHHHH
Q 004644 567 SHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGMK-IKPNA-GIWGTLLGACRMHQNIKLG 643 (740)
Q Consensus 567 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~l~~~~~~~g~~~~a 643 (740)
-+.|+.|+|+.+|+++.. ++|. +..--..+..+...+++++|+..+++++ ..|+. .++..++..|.+.|+.+.|
T Consensus 534 ~~~k~~d~AL~~~~~A~~---ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 534 HQLKRKDKALQLYEKAIH---LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred HHhhhhhHHHHHHHHHHh---cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHH
Confidence 899999999999999975 5665 4444556778889999999999998884 55655 4788888999999999999
Q ss_pred HHHHHHhHccCCCCCc
Q 004644 644 RIAVEKLSELEPQKTS 659 (740)
Q Consensus 644 ~~~~~~~~~~~p~~~~ 659 (740)
+.-+..++.++|.-..
T Consensus 611 l~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 611 LLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHhhHHHhcCCCccch
Confidence 9999999999998654
No 44
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=5e-12 Score=123.16 Aligned_cols=485 Identities=14% Similarity=0.109 Sum_probs=295.6
Q ss_pred ccccchHHHHHHHccCChhHHHHHHhhcc--CCCccchHHHHHHHHcCCChhHHHHHHhh--CCCCCcchHHHHHHHHhc
Q 004644 14 YVFNQNKKITQLGKSGRVEEAIKIFSQMS--QKNTVTYNSMISAYAKNGRVNDARKLFEQ--MPQRNLVSWNSMIAGYLH 89 (740)
Q Consensus 14 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~l~~~~~~ 89 (740)
+...+..+++-+..+.++.-|.-.-+++. ..+|....-+++++.-.|+++.|..+... +.+.+.......+.++.+
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~ 94 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVK 94 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 34455566777778888888888888764 57888888899999999999988877654 445777778888889999
Q ss_pred CCChHHHHHHHHhccC-CCcccHHHHHHHHHcCCChHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHhcCCC
Q 004644 90 NDKVKEARELFDKMFR-PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS 168 (740)
Q Consensus 90 ~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 168 (740)
..++++|..++..... .+++.+..--. ...-+.+.+. +..+.......+..-+.+|....+.++|+..|.+...
T Consensus 95 lk~~~~al~vl~~~~~~~~~f~yy~~~~--~~~l~~n~~~---~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~ 169 (611)
T KOG1173|consen 95 LKEWDQALLVLGRGHVETNPFSYYEKDA--ANTLELNSAG---EDLMINLESSICYLRGKVYVALDNREEARDKYKEALL 169 (611)
T ss_pred HHHHHHHHHHhcccchhhcchhhcchhh--hceeccCccc---ccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh
Confidence 9999999998875511 22222211110 0000111111 1111122233344455667777788888888887776
Q ss_pred CCcccHHHHHHHHHhC-CChHHHHHHHHhc-----ccCCcchHHHHHHHHhcCCChHHHHHHh--cccC--CCchhHHHH
Q 004644 169 KNIVSWNSMLSGYTKN-GEMHLASKFFEAM-----EERDVVSWNLMLDGYVELDDLDSAWKFF--QKIP--EQNVVSWVT 238 (740)
Q Consensus 169 ~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~--~~~~--~~~~~~~~~ 238 (740)
.|+..+..+...-... -..++-..++... ...+......+.....-...-+.....- ..+. ..++.....
T Consensus 170 ~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~ 249 (611)
T KOG1173|consen 170 ADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAE 249 (611)
T ss_pred cchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHH
Confidence 6666555443322111 1111222233221 1111111111111110000000000000 0010 345556666
Q ss_pred HHHHHHhcCChHHHHHHhccCCCCCc---chHHHHHHHHHHcCCHHHHHHHHhhCCC---CChhhHHHHHHHHhhhCCHH
Q 004644 239 MLSGYARNGRMLEARRLFDQMPIRNV---VAWNAMIAAYVQRGQIEEAARLFIEMPE---RNPVSWTTMIDGYVRIAKLD 312 (740)
Q Consensus 239 l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 312 (740)
...-+...+++.+..++++.+.+.|+ ..+..-|.++...|+..+-..+=.++.+ ..+.+|-++.--|...|+..
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcH
Confidence 67777778888888888877765444 3455556677777776666555555553 34567777777777777777
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHHhcCChhHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHhccc---CCHH
Q 004644 313 EARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN---KDIV 389 (740)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~ 389 (740)
+|++.|.+....+ +.-...|-.++..|.-.|..++|+..|..+-+ ....
T Consensus 330 eARry~SKat~lD----------------------------~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl 381 (611)
T KOG1173|consen 330 EARRYFSKATTLD----------------------------PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL 381 (611)
T ss_pred HHHHHHHHHhhcC----------------------------ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc
Confidence 7777776643221 23345677777777777777777777766543 1112
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHhh--CCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHh
Q 004644 390 TWNTMIAGYAQIRQMDDAVKIFEEM--GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE--GKKADHSTLACALSAC 465 (740)
Q Consensus 390 ~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~~l~~~ 465 (740)
.+--++.-|.+.++...|.++|.+. ..+.|+...+.+.-.....+.+.+|..+|+..+.. .+.+...
T Consensus 382 P~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~--------- 452 (611)
T KOG1173|consen 382 PSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI--------- 452 (611)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc---------
Confidence 2233445567777777787777766 33446666777777777777777777777765411 0000000
Q ss_pred hhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHH
Q 004644 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIK 542 (740)
Q Consensus 466 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~ 542 (740)
.-..+++.|+..|.|++..++|+..|++.. |.+..++.+++-.|...|+++.|++
T Consensus 453 ----------------------~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 453 ----------------------FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred ----------------------chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHH
Confidence 123356788899999999999999998754 8889999999999999999999999
Q ss_pred HHHHHHHCCCCCChHHHHHHHH
Q 004644 543 LFEEMVMEGVAPDPVTFIGVLS 564 (740)
Q Consensus 543 ~~~~m~~~~~~p~~~~~~~ll~ 564 (740)
.|.+.+. +.||..+...++.
T Consensus 511 ~fhKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 511 HFHKALA--LKPDNIFISELLK 530 (611)
T ss_pred HHHHHHh--cCCccHHHHHHHH
Confidence 9999887 7898877666665
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1e-11 Score=118.58 Aligned_cols=406 Identities=15% Similarity=0.104 Sum_probs=217.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHhccC--CC-cccHHHHHHHHHcCCChHHHHHHHhhC--CCCCChhhHHHHHHHHHhcC
Q 004644 80 WNSMIAGYLHNDKVKEARELFDKMFR--PD-LFSWALMITCYTRKGELEKARELFDLL--PNKEDTACWNAMVAGYAKIG 154 (740)
Q Consensus 80 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~g 154 (740)
+-..+.-+.++|++++|+++|..+++ || +..|.....+|...|+|++..+.-... .+|.-+.+++....++-..|
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Confidence 34566778899999999999999965 77 778888999999999999988877776 44556778888888899999
Q ss_pred ChhhHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHhc------------ccCCcchHHHHHHHHhcCCChHHHH
Q 004644 155 NYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAM------------EERDVVSWNLMLDGYVELDDLDSAW 222 (740)
Q Consensus 155 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~ 222 (740)
++++|+.=. |-.++..++....-..-+.+++++. ..|... -...+..|...=..+--.
T Consensus 198 ~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lP-S~~fi~syf~sF~~~~~~ 267 (606)
T KOG0547|consen 198 KFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLP-SATFIASYFGSFHADPKP 267 (606)
T ss_pred cHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCC-cHHHHHHHHhhccccccc
Confidence 998886532 2222333332222222222222221 111111 111111111110000000
Q ss_pred HHhcccCCCchhHHHHHHHHHHhc-CChHHHHHHhccCC-------CC---CcchHHHHHHHHHHcCCHHHHHHHHhhCC
Q 004644 223 KFFQKIPEQNVVSWVTMLSGYARN-GRMLEARRLFDQMP-------IR---NVVAWNAMIAAYVQRGQIEEAARLFIEMP 291 (740)
Q Consensus 223 ~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~-------~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 291 (740)
.........|...-..+-..+... ..+..|...+.+-. .. |... ..+..+
T Consensus 268 ~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~l-e~~A~a------------------ 328 (606)
T KOG0547|consen 268 LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAEL-EYMAEA------------------ 328 (606)
T ss_pred cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhH-HHHHHH------------------
Confidence 000000001111111111111110 12233333222110 00 0000 111111
Q ss_pred CCChhhHHHHHHHHhhhCCHHHHHHHHhhCCCC---chhHHHHHHHHHHhcCChhHHHHHHhh---cCCCChhhHHHHHH
Q 004644 292 ERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK---NIAAQTAMISGYVQNKRMDEANQIFDK---IGTHDVVCWNVMIK 365 (740)
Q Consensus 292 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~l~~ 365 (740)
.......+.-.|+.-.+..-|+..+.. .+..+..++.+|....+.++....|.+ +.|.++.+|..-..
T Consensus 329 ------l~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQ 402 (606)
T KOG0547|consen 329 ------LLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQ 402 (606)
T ss_pred ------HHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHH
Confidence 111111122334444444444443322 222344445555555555555555544 34667788888888
Q ss_pred HHHHcCCHHHHHHHHHhcccCC---HHHHHHHHHHHHccCCHHHHHHHHHhh--CCCCCeecHHHHHHHHHcCCChHHHH
Q 004644 366 GYAQCGRMDEAINLFRQMVNKD---IVTWNTMIAGYAQIRQMDDAVKIFEEM--GKRRNTVSWNALISGFLQNEFHLDAL 440 (740)
Q Consensus 366 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~ 440 (740)
++.-.+++++|..-|++.+..+ +..|..+..+..+.++++++...|++. ..+..+..|+-....+..+++++.|.
T Consensus 403 m~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~ 482 (606)
T KOG0547|consen 403 MRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAV 482 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHH
Confidence 8888888888888888887644 345666666677778888888888887 33445667777777777788888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccCC--
Q 004644 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP-- 518 (740)
Q Consensus 441 ~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 518 (740)
+.|+........-+.... .+.+.+..+++-.--+ +++..|..++++..+
T Consensus 483 k~YD~ai~LE~~~~~~~v----------------------------~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~D 533 (606)
T KOG0547|consen 483 KQYDKAIELEPREHLIIV----------------------------NAAPLVHKALLVLQWK-EDINQAENLLRKAIELD 533 (606)
T ss_pred HHHHHHHhhccccccccc----------------------------cchhhhhhhHhhhchh-hhHHHHHHHHHHHHccC
Confidence 877776543221111110 1111122222222222 677777777776653
Q ss_pred -CCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004644 519 -VDVISWNSLIAGYAINGNATEAIKLFEEMVM 549 (740)
Q Consensus 519 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 549 (740)
+....|.+|...-.+.|+.++|+++|++...
T Consensus 534 pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 534 PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3345677888888888888888888887654
No 46
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.52 E-value=3.1e-09 Score=105.39 Aligned_cols=523 Identities=13% Similarity=0.202 Sum_probs=273.9
Q ss_pred CCccchHHHHHHHHcCCChhHHHHHHhhCCC-----CCcchHHHHHHHHhcCCChHHHHHHHHhccCCCcccHHHHHHHH
Q 004644 44 KNTVTYNSMISAYAKNGRVNDARKLFEQMPQ-----RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCY 118 (740)
Q Consensus 44 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 118 (740)
+-|..|...++.+.++|++..-+..|++++. .....|...+......|-++-++.+|++-++-++..-...+..+
T Consensus 100 kmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L 179 (835)
T KOG2047|consen 100 KMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYL 179 (835)
T ss_pred cCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5567788888888889999988888888764 23445777777777888888899999888887766677788888
Q ss_pred HcCCChHHHHHHHhhCCC---------CCChhhHHHHHHHHHhcCC---hhhHHHHHhcCCCC--C--cccHHHHHHHHH
Q 004644 119 TRKGELEKARELFDLLPN---------KEDTACWNAMVAGYAKIGN---YNEAKKLLDAMPSK--N--IVSWNSMLSGYT 182 (740)
Q Consensus 119 ~~~~~~~~a~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~--~--~~~~~~l~~~~~ 182 (740)
...+++++|.+.+..+.+ +.+...|..+-+...+.-+ --...+++..+..+ | ..-|.+|...|.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 888899888888877621 2233455555554444322 22233444444432 2 236888888999
Q ss_pred hCCChHHHHHHHHhccc--CCcchHHHHHHHHhcCCChHHHHHHh-cc---cCCCchhHHHHHH---HHHHhcCChHHHH
Q 004644 183 KNGEMHLASKFFEAMEE--RDVVSWNLMLDGYVELDDLDSAWKFF-QK---IPEQNVVSWVTML---SGYARNGRMLEAR 253 (740)
Q Consensus 183 ~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~-~~---~~~~~~~~~~~l~---~~~~~~g~~~~A~ 253 (740)
+.|.+++|.++|++... ....-|..+.++|.......-+..+= .. ..+.+.......+ ..... ++..-.-
T Consensus 260 r~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~-rr~~~lN 338 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN-RRPLLLN 338 (835)
T ss_pred HhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh-ccchHHH
Confidence 99999999999888764 23344555555554432211111111 00 0001100000000 00000 0000011
Q ss_pred HHhccCCCCCcchHHHHHHHHHHcCCHHHHHHHHhhCCC---C------ChhhHHHHHHHHhhhCCHHHHHHHHhhCCCC
Q 004644 254 RLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPE---R------NPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324 (740)
Q Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 324 (740)
.++-+-.+.++..|..-+.. ..|++.+-...|.+..+ | -...|..+...|...|+++.|+.+|++..+-
T Consensus 339 sVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 11111112233444443332 34555555666655542 1 1134666777777777777777777776654
Q ss_pred chh-------HHHHHHHHHHhcCChhHHHHHHhhcC--CC-------------------ChhhHHHHHHHHHHcCCHHHH
Q 004644 325 NIA-------AQTAMISGYVQNKRMDEANQIFDKIG--TH-------------------DVVCWNVMIKGYAQCGRMDEA 376 (740)
Q Consensus 325 ~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-------------------~~~~~~~l~~~~~~~g~~~~A 376 (740)
+.. ++..-+.+-.+..+++.|.++.+... |. +..+|...++.....|-++..
T Consensus 417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest 496 (835)
T KOG2047|consen 417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST 496 (835)
T ss_pred CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence 332 33334444445566666666665421 11 233455566666666666777
Q ss_pred HHHHHhccc---CCHHHHHHHHHHHHccCCHHHHHHHHHhh---CCCCCe-ecHHHHHHHHHc---CCChHHHHHHHHHH
Q 004644 377 INLFRQMVN---KDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNT-VSWNALISGFLQ---NEFHLDALKIFVLM 446 (740)
Q Consensus 377 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~-~~~~~li~~~~~---~~~~~~A~~~~~~m 446 (740)
..+|+++++ ..|.........+-.+.-++++.++|++- -..|++ ..|+..+.-+.+ ....+.|..+|++.
T Consensus 497 k~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 497 KAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 777777654 23333333333444455566666666654 111221 235554444432 33455555555555
Q ss_pred HHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccCC-----CCc
Q 004644 447 TQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADP-----VDV 521 (740)
Q Consensus 447 ~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~ 521 (740)
+. |.+|...-. +|-.....--+-|-...|.+++++... .-.
T Consensus 577 L~-~Cpp~~aKt---------------------------------iyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l 622 (835)
T KOG2047|consen 577 LD-GCPPEHAKT---------------------------------IYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRL 622 (835)
T ss_pred Hh-cCCHHHHHH---------------------------------HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHH
Confidence 44 333332211 111111111223444455555554331 112
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHH---HHHhhcccchHHHHHHHHHHhhhhcCCcCC--cchHH
Q 004644 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIG---VLSACSHVGLVDGGLKLFECMTEVYAIEPL--VEHYA 596 (740)
Q Consensus 522 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~---ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~ 596 (740)
..||..|.-.+..=-.....++|++.++. -||...-.. ....-.+.|..+.|+.+|....+. ..|. .+.|.
T Consensus 623 ~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~--~dPr~~~~fW~ 698 (835)
T KOG2047|consen 623 DMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI--CDPRVTTEFWD 698 (835)
T ss_pred HHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc--CCCcCChHHHH
Confidence 34666554443333344556677777663 455432222 222335566666666666655442 3343 44455
Q ss_pred HHhhhhhccCC
Q 004644 597 CMIDLLSRAGR 607 (740)
Q Consensus 597 ~l~~~~~~~g~ 607 (740)
..-+.=.+.|+
T Consensus 699 twk~FEvrHGn 709 (835)
T KOG2047|consen 699 TWKEFEVRHGN 709 (835)
T ss_pred HHHHHHHhcCC
Confidence 55555556666
No 47
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.51 E-value=4.5e-09 Score=104.31 Aligned_cols=428 Identities=13% Similarity=0.161 Sum_probs=231.3
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHhcCCC-----CCcccHHHHHHHHHhCCChHHHHHHHHhcccCCcchHHHHHHHHhc
Q 004644 140 TACWNAMVAGYAKIGNYNEAKKLLDAMPS-----KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVE 214 (740)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 214 (740)
+..|...+....++|++...+..|++.+. .-...|.-.+.-..+.|-++-++.+|++.++.+|......+..+.+
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAK 181 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 35677777777888888888888876542 2223677777777778888888888888888777777778888888
Q ss_pred CCChHHHHHHhcccC----------CCchhHHHHHHHHHHhcCChH---HHHHHhccCCC----CCcchHHHHHHHHHHc
Q 004644 215 LDDLDSAWKFFQKIP----------EQNVVSWVTMLSGYARNGRML---EARRLFDQMPI----RNVVAWNAMIAAYVQR 277 (740)
Q Consensus 215 ~~~~~~a~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~----~~~~~~~~l~~~~~~~ 277 (740)
.+++++|.+.+..++ +.+...|..+....++.-+.- ....+++.+.. .-...|++|.+-|.+.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 888888888877766 234455666666555543322 22233444432 2235788888889999
Q ss_pred CCHHHHHHHHhhCCC--CChhhHHHHHHHHhhhCCHHHH----------------------HHHHhhCCCCchhHHH---
Q 004644 278 GQIEEAARLFIEMPE--RNPVSWTTMIDGYVRIAKLDEA----------------------RRLLDQMPYKNIAAQT--- 330 (740)
Q Consensus 278 g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a----------------------~~~~~~~~~~~~~~~~--- 330 (740)
|.++.|.++|++... -...-|+.+.++|.......-+ ..-|+.+....+...+
T Consensus 262 g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 999999888888764 2333344555554433221111 1111111111100000
Q ss_pred ----------HHHHHHHhcCChhHHHHHHhhcC----CC-----ChhhHHHHHHHHHHcCCHHHHHHHHHhcccCC----
Q 004644 331 ----------AMISGYVQNKRMDEANQIFDKIG----TH-----DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD---- 387 (740)
Q Consensus 331 ----------~l~~~~~~~~~~~~A~~~~~~~~----~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---- 387 (740)
-+-..-+..|+..+-...+.+.. |. -...|..+...|...|+++.|..+|++..+-+
T Consensus 342 LRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v 421 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTV 421 (835)
T ss_pred HhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch
Confidence 00001111222333333332211 10 11234445555555555555555555554311
Q ss_pred ---HHHHHHHHHHHHccCCHHHHHHHHHhhCCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004644 388 ---IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSA 464 (740)
Q Consensus 388 ---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~ 464 (740)
..+|.....+=.+..+++.|++++++...-|.... ..+..++.+..+. +.-+...++..+..
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~-----~~~yd~~~pvQ~r----------lhrSlkiWs~y~Dl 486 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE-----LEYYDNSEPVQAR----------LHRSLKIWSMYADL 486 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh-----hhhhcCCCcHHHH----------HHHhHHHHHHHHHH
Confidence 12344444444444455555555554422221110 1111111111000 00112233334444
Q ss_pred hhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccC----CCCc-chHHHHHHHHHhc---CC
Q 004644 465 CAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD----PVDV-ISWNSLIAGYAIN---GN 536 (740)
Q Consensus 465 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~l~~~~~~~---g~ 536 (740)
-...|-++..+.+++.++...+..+..+- .....+.....++++.+++++.. .|++ ..|+..+.-+... -.
T Consensus 487 eEs~gtfestk~vYdriidLriaTPqii~-NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 487 EESLGTFESTKAVYDRIIDLRIATPQIII-NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHHhccHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 45567777788888888877654333322 23334555566888888888765 2333 4677766555432 25
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHhh--cccchHHHHHHHHHHhhh
Q 004644 537 ATEAIKLFEEMVMEGVAPDPVTFIGVLSAC--SHVGLVDGGLKLFECMTE 584 (740)
Q Consensus 537 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~--~~~g~~~~a~~~~~~~~~ 584 (740)
.+.|..+|++.++ |.+|...-+..++.|- -.-|....|+++++++..
T Consensus 566 lEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 566 LERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 7888888888888 6777766444444332 235777788888877655
No 48
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.51 E-value=8.4e-11 Score=121.89 Aligned_cols=170 Identities=14% Similarity=0.123 Sum_probs=130.3
Q ss_pred CChHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCChhhHHHHHhcCCC---CCcccHHHHHHHHHhCCChHHHHHHHHh
Q 004644 122 GELEKARELFDLL--PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS---KNIVSWNSMLSGYTKNGEMHLASKFFEA 196 (740)
Q Consensus 122 ~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 196 (740)
.+...|...|-+. .++.-..+|..|+..|....+...|.+.|+...+ .+..++-.....|++..+++.|....-.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 3466666666554 4455667899999999998899999999998764 4556788899999999999999988544
Q ss_pred cccCC-----cchHHHHHHHHhcCCChHHHHHHhcccC---CCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCcchHH
Q 004644 197 MEERD-----VVSWNLMLDGYVELDDLDSAWKFFQKIP---EQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWN 268 (740)
Q Consensus 197 ~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 268 (740)
..+.+ ...|...+-.|.+.++...++.-|+.+. |.|...|..++.+|.++|++..|.++|.+...-++..+.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 44322 1234445667888899999999999876 778889999999999999999999999887755444332
Q ss_pred H---HHHHHHHcCCHHHHHHHHhhCC
Q 004644 269 A---MIAAYVQRGQIEEAARLFIEMP 291 (740)
Q Consensus 269 ~---l~~~~~~~g~~~~A~~~~~~~~ 291 (740)
. .....+..|.+.+|+..+....
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2 3335567899999999888766
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.50 E-value=2.4e-14 Score=139.51 Aligned_cols=238 Identities=18% Similarity=0.276 Sum_probs=78.1
Q ss_pred HHHHHHHccCChhHHHHHHhhc-----cCCCccchHHHHHHHHcCCChhHHHHHHhhCCCC---CcchHHHHHHHHhcCC
Q 004644 20 KKITQLGKSGRVEEAIKIFSQM-----SQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQR---NLVSWNSMIAGYLHND 91 (740)
Q Consensus 20 ~~~~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g 91 (740)
.+...+.+.|++++|..++++. .+.++..|..++..+...|+++.|+..|+++... ++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 5577788888888888888542 1345566666777777778888888888887653 23345566666 6777
Q ss_pred ChHHHHHHHHhccC--CCcccHHHHHHHHHcCCChHHHHHHHhhC----CCCCChhhHHHHHHHHHhcCChhhHHHHHhc
Q 004644 92 KVKEARELFDKMFR--PDLFSWALMITCYTRKGELEKARELFDLL----PNKEDTACWNAMVAGYAKIGNYNEAKKLLDA 165 (740)
Q Consensus 92 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 165 (740)
++++|..+++...+ +++..+...+..+...++++.+..+++.+ ..+.++..|..++.++.+.|+.++|++.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888887777654 45556666777777777887777777764 2235666677777777777777777777776
Q ss_pred CCC--C-CcccHHHHHHHHHhCCChHHHHHHHHhcc---cCCcchHHHHHHHHhcCCChHHHHHHhcccC---CCchhHH
Q 004644 166 MPS--K-NIVSWNSMLSGYTKNGEMHLASKFFEAME---ERDVVSWNLMLDGYVELDDLDSAWKFFQKIP---EQNVVSW 236 (740)
Q Consensus 166 ~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~ 236 (740)
..+ | |....+.++..+...|+.+++..+++... ..|+..+..++.++...|+.++|...+++.. |.|+...
T Consensus 172 al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~ 251 (280)
T PF13429_consen 172 ALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWL 251 (280)
T ss_dssp HHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccc
Confidence 652 3 35566667777777777776655555544 2445555556666666666666666666554 4555566
Q ss_pred HHHHHHHHhcCChHHHHHHhcc
Q 004644 237 VTMLSGYARNGRMLEARRLFDQ 258 (740)
Q Consensus 237 ~~l~~~~~~~g~~~~A~~~~~~ 258 (740)
..++..+...|+.++|..+.++
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHT--------------
T ss_pred cccccccccccccccccccccc
Confidence 6666666666666666655544
No 50
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.49 E-value=1.4e-10 Score=120.27 Aligned_cols=611 Identities=13% Similarity=0.082 Sum_probs=277.7
Q ss_pred hhHHHHHHhhccCCCc---cchHHHHHHHHcCCChhHHHHHHhhCCCC---CcchHHHHHHHHhcCCChHHHHHHHHhcc
Q 004644 31 VEEAIKIFSQMSQKNT---VTYNSMISAYAKNGRVNDARKLFEQMPQR---NLVSWNSMIAGYLHNDKVKEARELFDKMF 104 (740)
Q Consensus 31 ~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 104 (740)
...|..+|-+....++ .+|..|+..|...-+...|.+.|+.+-+- +..++......|+...+++.|..+.-..-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 4555555544443333 25556666665555666666666655442 23345555666666666666665533322
Q ss_pred CCC-----cccHHHHHHHHHcCCChHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCChhhHHHHHhcCCCCCcccHHH-
Q 004644 105 RPD-----LFSWALMITCYTRKGELEKARELFDLL--PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNS- 176 (740)
Q Consensus 105 ~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~- 176 (740)
+.+ ...|..+.-.+...++...|...|+.. .+|.|...|..++.+|..+|++..|.++|.+...-++..+..
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 211 123344444555556666666666655 345556666666666666666666666665554333333222
Q ss_pred --HHHHHHhCCChHHHHHHHHhccc------C----CcchHHHHHHHHhcCCChHHHHHHhcccC-----------CCch
Q 004644 177 --MLSGYTKNGEMHLASKFFEAMEE------R----DVVSWNLMLDGYVELDDLDSAWKFFQKIP-----------EQNV 233 (740)
Q Consensus 177 --l~~~~~~~g~~~~A~~~~~~~~~------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----------~~~~ 233 (740)
.....+..|++.+|+..+..... + -..++......+...|-..++..++++.. ..+.
T Consensus 634 fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~ 713 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDR 713 (1238)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhH
Confidence 12233445666666665555441 0 01122222222222222222222222111 0111
Q ss_pred hHHHHHHHH-------------------HHh----cCCh---H---HHHHHhccCC--CCCcchHHHHHHHHHH----c-
Q 004644 234 VSWVTMLSG-------------------YAR----NGRM---L---EARRLFDQMP--IRNVVAWNAMIAAYVQ----R- 277 (740)
Q Consensus 234 ~~~~~l~~~-------------------~~~----~g~~---~---~A~~~~~~~~--~~~~~~~~~l~~~~~~----~- 277 (740)
..|..+... +.. .+.. + -+.+.+-.-. ..+..+|..++..|.+ .
T Consensus 714 ~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~ 793 (1238)
T KOG1127|consen 714 LQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLG 793 (1238)
T ss_pred HHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcC
Confidence 111111111 111 1111 0 0011110000 1124455555554443 1
Q ss_pred ---CCHHHHHHHHhhCCC---CChhhHHHHHHHHhhhCCHHHHHHHHhhCCC---CchhHHHHHHHHHHhcCChhHHHHH
Q 004644 278 ---GQIEEAARLFIEMPE---RNPVSWTTMIDGYVRIAKLDEARRLLDQMPY---KNIAAQTAMISGYVQNKRMDEANQI 348 (740)
Q Consensus 278 ---g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~ 348 (740)
.+...|+..++...+ .+..+|+.+.-. ...|++.-+...|-+... ....++..++..+....+++.|...
T Consensus 794 et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~a 872 (1238)
T KOG1127|consen 794 ETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPA 872 (1238)
T ss_pred CcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHH
Confidence 122356666665553 445555555444 444555555444433221 1222333344444444555555544
Q ss_pred Hhhc---CCCChhhHHHHHHHHHHcCCHHHHHHHHHhccc--------CCHHHHHHHHHHHHccCCHHHHHHHHHhhCCC
Q 004644 349 FDKI---GTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN--------KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR 417 (740)
Q Consensus 349 ~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 417 (740)
|.+. .|.|...|-.........|+.-++..+|..--+ ++..-|.........+|+.++-....+.+.
T Consensus 873 f~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~-- 950 (1238)
T KOG1127|consen 873 FSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKIS-- 950 (1238)
T ss_pred HHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhh--
Confidence 4442 233334444444444444544444444444110 222222222223333344333333222220
Q ss_pred CCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHH----Hh-CCCCChhH
Q 004644 418 RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI----KS-GYVNDLFV 492 (740)
Q Consensus 418 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~----~~-g~~~~~~~ 492 (740)
.|--.+++.. .+.+.+.+.|........+.+....+.....+.+ .. ....+...
T Consensus 951 --------------------sAs~al~~yf-~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynva 1009 (1238)
T KOG1127|consen 951 --------------------SASLALSYYF-LGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVA 1009 (1238)
T ss_pred --------------------hhHHHHHHHH-hcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 0000111111 1223334444444444444444444443333322 11 11111112
Q ss_pred HHHHHHHhhccCCHHHHHHHhcccC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCh-HHHHHHHHhhccc
Q 004644 493 GNSLITMYAKCGRIQNAELLFKDAD-PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG-VAPDP-VTFIGVLSACSHV 569 (740)
Q Consensus 493 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~-~~~~~ll~a~~~~ 569 (740)
-......+...|.++.|..-+.... ..+..+-..-+.. ...|+++++++.|+++..-- -..+. +....++-+....
T Consensus 1010 k~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~ 1088 (1238)
T KOG1127|consen 1010 KPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLA 1088 (1238)
T ss_pred hhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhc
Confidence 2234455667788887777666544 2222222222222 44689999999999988731 12222 3455566666778
Q ss_pred chHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCC---hHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHH
Q 004644 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGR---LDEAFEMVKGMK----IKPNAGIWGTLLGACRMHQNIKL 642 (740)
Q Consensus 570 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~ 642 (740)
+.-+.|...+-+.... ..|+.....++.-++.-..+ ...+.+-+...+ +--++..... ..+..+|+-..
T Consensus 1089 ~~k~~A~~lLfe~~~l--s~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e--~i~~~~~r~~~ 1164 (1238)
T KOG1127|consen 1089 RQKNDAQFLLFEVKSL--SKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKE--LIYALQGRSVA 1164 (1238)
T ss_pred ccchHHHHHHHHHHHh--CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHH--HHHHHhhhhHH
Confidence 8888888777766652 34445554444433332221 111222222221 1111111111 23567888889
Q ss_pred HHHHHHHhHccCCCCCcchHHHHHHHHh
Q 004644 643 GRIAVEKLSELEPQKTSCYALLSNMHAE 670 (740)
Q Consensus 643 a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 670 (740)
..+..+++.-.+|.+|..|..|..-|++
T Consensus 1165 vk~~~qr~~h~~P~~~~~WslL~vrya~ 1192 (1238)
T KOG1127|consen 1165 VKKQIQRAVHSNPGDPALWSLLSVRYAQ 1192 (1238)
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 9999999999999999999999865543
No 51
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.46 E-value=1.7e-10 Score=117.77 Aligned_cols=140 Identities=11% Similarity=-0.000 Sum_probs=62.1
Q ss_pred HHHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHh
Q 004644 506 IQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582 (740)
Q Consensus 506 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 582 (740)
.+...++++.++ +.++.....++..+...|+.++|.+.+++..+. .|+.... ++.+....++.+++.+..+..
T Consensus 245 ~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~ 320 (398)
T PRK10747 245 SEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQ 320 (398)
T ss_pred HHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHH
Confidence 333444444433 344555555566666666666666666555552 3333211 112222334444444444444
Q ss_pred hhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHc
Q 004644 583 TEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSE 652 (740)
Q Consensus 583 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 652 (740)
.+. .|+ +..+.+++.++.+.|++++|.+.|+.. ...|+...+..+...+...|+.++|...+++.+.
T Consensus 321 lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 321 IKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred Hhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 432 222 233344444444444444444444332 2334444444444444444444444444444443
No 52
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.45 E-value=5e-11 Score=121.63 Aligned_cols=275 Identities=11% Similarity=0.050 Sum_probs=194.9
Q ss_pred hcCChhHHHHHHhhcCCC--ChhhHHH-HHHHHHHcCCHHHHHHHHHhccc--CCHHHHH--HHHHHHHccCCHHHHHHH
Q 004644 338 QNKRMDEANQIFDKIGTH--DVVCWNV-MIKGYAQCGRMDEAINLFRQMVN--KDIVTWN--TMIAGYAQIRQMDDAVKI 410 (740)
Q Consensus 338 ~~~~~~~A~~~~~~~~~~--~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~--~l~~~~~~~~~~~~A~~~ 410 (740)
..|+++.|++.+.+.... ++..+.. ...+..+.|+++.|...|.++.+ |+..... .....+...|+++.|...
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 346666666666553322 2333333 34445788999999999988875 3332222 336678888999999999
Q ss_pred HHhh--CCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHhhhhhhhHHHHHHHHHH
Q 004644 411 FEEM--GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHS-------TLACALSACAHLAALQLGRQIHHLA 481 (740)
Q Consensus 411 ~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-------~~~~~l~~~~~~~~~~~a~~~~~~~ 481 (740)
++++ ..+.+......+...|.+.|++++|..++..+.+.+..++.. ++..++.......+.+...+.+..+
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 8887 324456677788888999999999999999998877654332 2222232222333334444444443
Q ss_pred HHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHH
Q 004644 482 IKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV-TFI 560 (740)
Q Consensus 482 ~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~ 560 (740)
.+. .+.++.+...+...+...|+.++|.+++++..+.....--.++.+....++.+++++..++..+. .|+.. ...
T Consensus 256 p~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l 332 (398)
T PRK10747 256 SRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWS 332 (398)
T ss_pred CHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHH
Confidence 222 34578888899999999999999999998776433222223444555669999999999999985 56655 677
Q ss_pred HHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhC
Q 004644 561 GVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618 (740)
Q Consensus 561 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 618 (740)
.+...|...|++++|++.|+.+.+ ..|+...+..+..++.+.|+.++|.+++++-
T Consensus 333 ~lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 333 TLGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 889999999999999999999976 6799888889999999999999999988653
No 53
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.44 E-value=2.9e-10 Score=116.81 Aligned_cols=285 Identities=10% Similarity=-0.003 Sum_probs=137.7
Q ss_pred HHHhcCChhHHHHHHhhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHhccc--CCH--HHHHHHHHHHHccCCHHHH
Q 004644 335 GYVQNKRMDEANQIFDKIGTH---DVVCWNVMIKGYAQCGRMDEAINLFRQMVN--KDI--VTWNTMIAGYAQIRQMDDA 407 (740)
Q Consensus 335 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~A 407 (740)
.....|+++.|.+.+.+..+. ....+-....+..+.|+++.|...+.++.+ |+. .........+...|+++.|
T Consensus 93 la~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 344556666666666554321 122233334455556666666666666532 222 1222335555556666666
Q ss_pred HHHHHhh--CCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhC
Q 004644 408 VKIFEEM--GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG 485 (740)
Q Consensus 408 ~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g 485 (740)
...++.+ ..+.+......+...+.+.|++++|..++..+.+.++.++......-..
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~---------------------- 230 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQK---------------------- 230 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH----------------------
Confidence 6666655 1122344455555555556666666665555555543221111000000
Q ss_pred CCCChhHHHHHHHHhhccCCHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHH-H
Q 004644 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI-G 561 (740)
Q Consensus 486 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~ 561 (740)
.+..+++.-......+...+.++..+ +.++..+..++..+...|+.++|.+++++..+. .||..... .
T Consensus 231 ------a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~ 302 (409)
T TIGR00540 231 ------AEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLP 302 (409)
T ss_pred ------HHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhH
Confidence 00000100011112233333343333 246666777777777777777777777777764 34432110 0
Q ss_pred HHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhC-CCCCCH---HHHHHHHHHHHhc
Q 004644 562 VLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPNA---GIWGTLLGACRMH 637 (740)
Q Consensus 562 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~---~~~~~l~~~~~~~ 637 (740)
++.. -.....++.+.+.+.++.. ...|+. ....++.+.|...
T Consensus 303 ~l~~----------------------------------~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~ 348 (409)
T TIGR00540 303 LCLP----------------------------------IPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKH 348 (409)
T ss_pred HHHH----------------------------------hhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHc
Confidence 0000 0011123333444444332 222322 3455666666666
Q ss_pred CCHHHHHHHHH--HhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHH
Q 004644 638 QNIKLGRIAVE--KLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSM 684 (740)
Q Consensus 638 g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 684 (740)
|++++|...++ .+++..|++.. +..|+.++.+.|+.++|.+++++-
T Consensus 349 ~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 349 GEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred ccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666 45556665543 446667777777777776666654
No 54
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=3e-09 Score=108.18 Aligned_cols=243 Identities=14% Similarity=0.115 Sum_probs=111.0
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHccCCHHHHHHHHHhhCCC----CCe----ecHHHH
Q 004644 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKR----RNT----VSWNAL 426 (740)
Q Consensus 355 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~----~~~~~l 426 (740)
.|+...+.-.+.|+...++++|..++-...+ |..-+.. ++..++.-..++-+.|... |+. .....+
T Consensus 1078 sDp~ll~RcadFF~~~~qyekAV~lL~~ar~-----~~~Alql-C~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqv 1151 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLARE-----FSGALQL-CKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQV 1151 (1416)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHH-HhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHH
Confidence 4777788888888888899999888765432 1111111 2222222233333333211 111 123345
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHH---------HHH----HHHHHHhCCCCChhHH
Q 004644 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLG---------RQI----HHLAIKSGYVNDLFVG 493 (740)
Q Consensus 427 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a---------~~~----~~~~~~~g~~~~~~~~ 493 (740)
...|.++|.+..|.+-|.+. |.+ ...+.+..+.|+.+.. +++ -..+....+..++.+.
T Consensus 1152 ae~c~qQG~Yh~AtKKfTQA---GdK------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~m 1222 (1416)
T KOG3617|consen 1152 AELCLQQGAYHAATKKFTQA---GDK------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTM 1222 (1416)
T ss_pred HHHHHhccchHHHHHHHhhh---hhH------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHH
Confidence 56667777777666655432 111 1122333333332211 111 1223334556667777
Q ss_pred HHHHHHhhccCCHHHHHHHhcccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH-HHHH----------
Q 004644 494 NSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT-FIGV---------- 562 (740)
Q Consensus 494 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l---------- 562 (740)
..++..|-|...++.--.+++......+.-+...-.+ +|-.++|-..+.++.+.+ +..| +..|
T Consensus 1223 K~I~tFYTKgqafd~LanFY~~cAqiEiee~q~ydKa---~gAl~eA~kCl~ka~~k~---~~~t~l~~Lq~~~a~vk~~ 1296 (1416)
T KOG3617|consen 1223 KDIETFYTKGQAFDHLANFYKSCAQIEIEELQTYDKA---MGALEEAAKCLLKAEQKN---MSTTGLDALQEDLAKVKVQ 1296 (1416)
T ss_pred hhhHhhhhcchhHHHHHHHHHHHHHhhHHHHhhhhHH---hHHHHHHHHHHHHHHhhc---chHHHHHHHHHHHHHHHHH
Confidence 6777777666655555444443332222222222111 133444445544444322 1111 1111
Q ss_pred HHhh-cccchHHHHHHHHHHhhhhcCCcCC----cchHHHHhhhhhccCChHHHHHHHHhCC
Q 004644 563 LSAC-SHVGLVDGGLKLFECMTEVYAIEPL----VEHYACMIDLLSRAGRLDEAFEMVKGMK 619 (740)
Q Consensus 563 l~a~-~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 619 (740)
+... ....+..+++.-...|..+ ++-|+ ...|..++..+.+..++..|...++.|.
T Consensus 1297 l~~~q~~~eD~~~~i~qc~~llee-p~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~ 1357 (1416)
T KOG3617|consen 1297 LRKLQIMKEDAADGIRQCTTLLEE-PILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQ 1357 (1416)
T ss_pred HHHHHHhhhhHHHHHHHHHHHhhC-cCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHh
Confidence 1110 0112444444444444443 22222 2345566666666666666666666663
No 55
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=1.3e-09 Score=99.99 Aligned_cols=421 Identities=12% Similarity=0.110 Sum_probs=253.6
Q ss_pred HHHHHccCChhHHHHHHhhccC----CCccchHHHHHHHHcCCChhHHHHHHhhCCC---CCcchHHHHHHHHhcCCChH
Q 004644 22 ITQLGKSGRVEEAIKIFSQMSQ----KNTVTYNSMISAYAKNGRVNDARKLFEQMPQ---RNLVSWNSMIAGYLHNDKVK 94 (740)
Q Consensus 22 ~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 94 (740)
+.-+....++..|+.+++--.. .....-.-++.++.+.|++++|...|..+.+ ++...+..++-++.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 6667778899999999886442 1112333466788899999999999987654 45567888888888889999
Q ss_pred HHHHHHHhccCCCcccHHHHHHHHHcCCChHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHhcCCC--CCcc
Q 004644 95 EARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS--KNIV 172 (740)
Q Consensus 95 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~ 172 (740)
+|..+-.++.+ ++---..++....+.+|-++-..+++.+++.. .-..+|+.+....-.+.+|++++.++.. |+..
T Consensus 109 eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~--EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 109 EAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL--EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred HHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH--HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 99988777643 12222345566777888888888888775422 3455677777777778999999998874 4445
Q ss_pred cHHHHH-HHHHhCCChHHHHHHHHhccc--CCc-chHHHHHHHHhcC--CCh--HHHHHHhcccCCCchhHHHHHHHHHH
Q 004644 173 SWNSML-SGYTKNGEMHLASKFFEAMEE--RDV-VSWNLMLDGYVEL--DDL--DSAWKFFQKIPEQNVVSWVTMLSGYA 244 (740)
Q Consensus 173 ~~~~l~-~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~--~~~--~~a~~~~~~~~~~~~~~~~~l~~~~~ 244 (740)
..|.-+ -+|.+..-++-+.++++-.++ ||. .+.+..+....+. |+. ++-..+.+.+... ...+.-.+
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~f~~~l~ 260 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YPFIEYLC 260 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----chhHHHHH
Confidence 666544 456777778877777776664 443 2222222222222 221 1111222221111 11222222
Q ss_pred hc-----CChHHHHHHhccCCCCCcchHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHhhh-------CCHH
Q 004644 245 RN-----GRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRI-------AKLD 312 (740)
Q Consensus 245 ~~-----g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~ 312 (740)
+. .+-+.|++++-.+...=+.+--.|+--|.+++++.+|..+.+++....|.-|..-.-..... ..+.
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlK 340 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLK 340 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 22 23456666665444333444555667788999999999999998865554443332223322 3455
Q ss_pred HHHHHHhhCCCCc-----hhHHHHHHHHHHhcCChhHHHHHHhhcC---CCChhhHHHHHHHHHHcCCHHHHHHHHHhcc
Q 004644 313 EARRLLDQMPYKN-----IAAQTAMISGYVQNKRMDEANQIFDKIG---THDVVCWNVMIKGYAQCGRMDEAINLFRQMV 384 (740)
Q Consensus 313 ~a~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 384 (740)
-|.+.|.-+...+ ++-...++..+.-..++++.+..+..+. ..|...--.+..+++..|++.+|.++|-++.
T Consensus 341 iAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is 420 (557)
T KOG3785|consen 341 IAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRIS 420 (557)
T ss_pred HHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhc
Confidence 5666666554432 3334556667777777777777666654 1233333346777777788888888777765
Q ss_pred cC---CHHHHHH-HHHHHHccCCHHHHHHHHHhhCCCCCeecHHHH-HHHHHcCCChHHHHHHHHHHHHCC
Q 004644 385 NK---DIVTWNT-MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNAL-ISGFLQNEFHLDALKIFVLMTQEG 450 (740)
Q Consensus 385 ~~---~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~A~~~~~~m~~~~ 450 (740)
.+ |..+|.+ |..+|.+++..+.|..++-.+..+.+..+.-.+ ...|.+.+.+--|-+.|+.+....
T Consensus 421 ~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 421 GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 43 3445544 456677777777777777666433333333222 234555555555555555554443
No 56
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=5.8e-08 Score=101.30 Aligned_cols=260 Identities=14% Similarity=0.181 Sum_probs=172.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHhhCCCCCeecH-----HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004644 387 DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSW-----NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACA 461 (740)
Q Consensus 387 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~ 461 (740)
||...+..+.++...+-..+-.++++++-..+++.+- |.|+-... .-+..+..++.+++-.- -.|+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdny-Da~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNY-DAPD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccC-Cchh------H
Confidence 4444444455555555555555666555333333321 12222222 22233344444333211 1121 2
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccCCCCcchHHHHHHHHHhcCChHHHH
Q 004644 462 LSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541 (740)
Q Consensus 462 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 541 (740)
...+...+-.++|..++... ..+....+.|++ .-+.++.|.++-+++.+| ..|..+..+-.+.|...+|+
T Consensus 1055 a~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHH
Confidence 22344455556666655532 223333333333 346777777777776654 57999999999999999999
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhCCCC
Q 004644 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIK 621 (740)
Q Consensus 542 ~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 621 (740)
+-|-+. .|+..|.-++..+++.|.+++-.+++..++++ .-+|.++ +.|+-+|++.+++.+-++++. .
T Consensus 1125 eSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----g 1191 (1666)
T KOG0985|consen 1125 ESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----G 1191 (1666)
T ss_pred HHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----C
Confidence 988553 35567899999999999999999999888775 5677766 789999999999999888876 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHh
Q 004644 622 PNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685 (740)
Q Consensus 622 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 685 (740)
||..-....+.-|...|.++.|.-.|... +.|..|+..+...|.+..|...-++..
T Consensus 1192 pN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1192 PNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred CCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 78888888899999999999998887664 568888888889999988876655443
No 57
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.42 E-value=1.4e-10 Score=119.01 Aligned_cols=217 Identities=12% Similarity=-0.027 Sum_probs=148.7
Q ss_pred hhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHH
Q 004644 467 HLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKL 543 (740)
Q Consensus 467 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~ 543 (740)
..|+.+.+...+..+.+..-.+...+.......+...|+.+.|.+.++.+. |.++.++..+...+...|++++|.++
T Consensus 130 ~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~ 209 (409)
T TIGR00540 130 QRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDI 209 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444444444444332211222233344667777888888888887665 66777888899999999999999999
Q ss_pred HHHHHHCCCCCChHHHHHHHHhh---cccchHHHHHHHHHHhhhhcC--CcCCcchHHHHhhhhhccCChHHHHHHHHhC
Q 004644 544 FEEMVMEGVAPDPVTFIGVLSAC---SHVGLVDGGLKLFECMTEVYA--IEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618 (740)
Q Consensus 544 ~~~m~~~~~~p~~~~~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 618 (740)
+..+.+.++.+..........+. ...+..+++...+..+.+... ...++..+..++..+...|+.++|.+.+++.
T Consensus 210 l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~ 289 (409)
T TIGR00540 210 IDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDG 289 (409)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 99999986543332211111222 334444555556665554321 1125778899999999999999999999765
Q ss_pred -CCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHhHccCCCCC--cchHHHHHHHHhcCCchHHHHHHHH
Q 004644 619 -KIKPNAGI---WGTLLGACRMHQNIKLGRIAVEKLSELEPQKT--SCYALLSNMHAEAGRWDEVEKVRVS 683 (740)
Q Consensus 619 -~~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~ 683 (740)
...||... +..........++.+.++..+++.++..|+++ .....+|+++.+.|+|++|.+.++.
T Consensus 290 l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 290 LKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred HhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 44565542 11122223345888999999999999999999 8899999999999999999999994
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.41 E-value=2e-11 Score=116.50 Aligned_cols=197 Identities=15% Similarity=0.095 Sum_probs=164.9
Q ss_pred ChhHHHHHHHHhhccCCHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHh
Q 004644 489 DLFVGNSLITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565 (740)
Q Consensus 489 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a 565 (740)
....+..+...|...|++++|.+.+++.. |.+...+..++..+...|++++|++.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 35667788899999999999999998754 5567788889999999999999999999998853 3345577778888
Q ss_pred hcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 004644 566 CSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM-KIKP-NAGIWGTLLGACRMHQNIKLG 643 (740)
Q Consensus 566 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 643 (740)
+...|++++|.+.|+.+.+..........+..++..+.+.|++++|.+.++.. ...| +...+..+...+...|+++.|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999874221222556778899999999999999998765 3344 455788888889999999999
Q ss_pred HHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhh
Q 004644 644 RIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEG 686 (740)
Q Consensus 644 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 686 (740)
...++++++..|+++..+..++.++...|++++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999887764
No 59
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=1.2e-08 Score=96.44 Aligned_cols=421 Identities=14% Similarity=0.164 Sum_probs=247.1
Q ss_pred HHHHHHHhcCCChHHHHHHHHhccCCCcc----cHHHHH--HHHHcCCChHHH-HHHHhhCCC--CCChhhHHHHHHHHH
Q 004644 81 NSMIAGYLHNDKVKEARELFDKMFRPDLF----SWALMI--TCYTRKGELEKA-RELFDLLPN--KEDTACWNAMVAGYA 151 (740)
Q Consensus 81 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~l~--~~~~~~~~~~~a-~~~~~~~~~--~~~~~~~~~l~~~~~ 151 (740)
+.|+. ....|..+.+.-+|+.|.+.+.. .-..|+ .+|..+.+..-| .+.|-.+.+ ..+..+|
T Consensus 120 ~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW-------- 190 (625)
T KOG4422|consen 120 NNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW-------- 190 (625)
T ss_pred hHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--------
Confidence 44443 34567788888888888653321 122222 222223322211 122322311 1222333
Q ss_pred hcCChhhHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHhccc----CCcchHHHHHHHHhcCCChHHHHHHhcc
Q 004644 152 KIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE----RDVVSWNLMLDGYVELDDLDSAWKFFQK 227 (740)
Q Consensus 152 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 227 (740)
+.|...+ ++-+...+...++..||.+.++--..+.|.++|++... .+..+|+.++.+-.-..+-+-.-+...+
T Consensus 191 K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisq 267 (625)
T KOG4422|consen 191 KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQ 267 (625)
T ss_pred ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHh
Confidence 3344333 45555566778999999999999999999999998874 4566777777654433332222222222
Q ss_pred cCCCchhHHHHHHHHHHhcCChHHHHHHhccC----C----CCCcchHHHHHHHHHHcCCHHH-HHHHHhhCC-------
Q 004644 228 IPEQNVVSWVTMLSGYARNGRMLEARRLFDQM----P----IRNVVAWNAMIAAYVQRGQIEE-AARLFIEMP------- 291 (740)
Q Consensus 228 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~----~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~------- 291 (740)
-..||..++++++.+..+.|+++.|+..+-++ . +|...+|..+|..+.+.+++.+ |...+.++.
T Consensus 268 km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~ 347 (625)
T KOG4422|consen 268 KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKT 347 (625)
T ss_pred hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCc
Confidence 23789999999999999999998887765443 2 5788899999998888887754 444444333
Q ss_pred -C----CChhhHHHHHHHHhhhCCHHHHHHHHhhCCCCchhHHHHHHHHHHhcCChhHHHHHHhhcCC--CChhhHHHHH
Q 004644 292 -E----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGT--HDVVCWNVMI 364 (740)
Q Consensus 292 -~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~ 364 (740)
+ .|..-|...+..|.+..+.+.|.++..-.... +- +..+.+ .....|..+.
T Consensus 348 fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg----------------~N------~~~ig~~~~~~fYyr~~~ 405 (625)
T KOG4422|consen 348 FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTG----------------DN------WKFIGPDQHRNFYYRKFF 405 (625)
T ss_pred ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----------------Cc------hhhcChHHHHHHHHHHHH
Confidence 1 24455777888888888988888876544321 10 001111 1234566777
Q ss_pred HHHHHcCCHHHHHHHHHhccc----CCHHHHHHHHHHHHccCCHHHHHHHHHhhCCCCCeecHHHHHHHHHcCCChHHHH
Q 004644 365 KGYAQCGRMDEAINLFRQMVN----KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDAL 440 (740)
Q Consensus 365 ~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 440 (740)
...|+....+.-...|+.|+. |++.+...++.+..-.|.++-..+++.++. .|-..-+.+--.
T Consensus 406 ~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~-------------~~ght~r~~l~e 472 (625)
T KOG4422|consen 406 DLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSK-------------EYGHTFRSDLRE 472 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHH-------------HhhhhhhHHHHH
Confidence 888888899999999999875 777788888888888888888888877762 111111112223
Q ss_pred HHHHHHHHCCCCCCHH---HHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccC
Q 004644 441 KIFVLMTQEGKKADHS---TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD 517 (740)
Q Consensus 441 ~~~~~m~~~~~~p~~~---~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 517 (740)
.++..|......|+.. -+.....-|+- ...+.....-.++.+.. .+....+.++-.+.+.|+.++|.++|.-+.
T Consensus 473 eil~~L~~~k~hp~tp~r~Ql~~~~ak~aa-d~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~ 549 (625)
T KOG4422|consen 473 EILMLLARDKLHPLTPEREQLQVAFAKCAA-DIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFL 549 (625)
T ss_pred HHHHHHhcCCCCCCChHHHHHHHHHHHHHH-HHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 3444444444445422 23222222211 11111111222333333 344556667777888889998888887552
Q ss_pred -C----CCcchHHH---HHHHHHhcCChHHHHHHHHHHHHCC
Q 004644 518 -P----VDVISWNS---LIAGYAINGNATEAIKLFEEMVMEG 551 (740)
Q Consensus 518 -~----~~~~~~~~---l~~~~~~~g~~~~A~~~~~~m~~~~ 551 (740)
. |-....|+ ++..-.+.+...+|+..++-|...+
T Consensus 550 ~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 550 RKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred hcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 1 22233443 4445556677778888887776544
No 60
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=4.2e-09 Score=99.38 Aligned_cols=333 Identities=17% Similarity=0.195 Sum_probs=200.5
Q ss_pred HHhhCCCCChhhHHHHHHHHhhhCCHHHHHHHHhhCCCCchhHHHHHHHHHHhcCChhHHHHHHhhcCCCChhhHHHHHH
Q 004644 286 LFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIK 365 (740)
Q Consensus 286 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~ 365 (740)
++-+.....+.|+..++.+.++.-..+.|..++.+...... +-+..++|.+|.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~---------------------------kv~~~aFN~lI~ 250 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKG---------------------------KVYREAFNGLIG 250 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh---------------------------eeeHHhhhhhhh
Confidence 55555556667777777777777777777777665432211 235566777765
Q ss_pred HHHHcCCHHHHHHHHHhc----ccCCHHHHHHHHHHHHccCCHHHHHH----HHHh---hCCCCCeecHHHHHHHHHcCC
Q 004644 366 GYAQCGRMDEAINLFRQM----VNKDIVTWNTMIAGYAQIRQMDDAVK----IFEE---MGKRRNTVSWNALISGFLQNE 434 (740)
Q Consensus 366 ~~~~~g~~~~A~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~----~~~~---~~~~~~~~~~~~li~~~~~~~ 434 (740)
+-.-.-. .+++.+| ..||..|+|+++.+..+.|+++.|.. ++.+ ++..|...+|..+|..+.+.+
T Consensus 251 ~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~ 326 (625)
T KOG4422|consen 251 ASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRES 326 (625)
T ss_pred HHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccC
Confidence 5332222 3445555 35888888888888888887766544 3333 388899999999999888877
Q ss_pred ChHH-HHHHHHHHHHC----CCC----CCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhC----CCCC---hhHHHHHHH
Q 004644 435 FHLD-ALKIFVLMTQE----GKK----ADHSTLACALSACAHLAALQLGRQIHHLAIKSG----YVND---LFVGNSLIT 498 (740)
Q Consensus 435 ~~~~-A~~~~~~m~~~----~~~----p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g----~~~~---~~~~~~l~~ 498 (740)
+..+ +..+..+.+.. ..+ .|...|...+..|.+..+.+.|.+++....... +.++ .+-|..+..
T Consensus 327 dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~ 406 (625)
T KOG4422|consen 327 DPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFD 406 (625)
T ss_pred CchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHH
Confidence 7644 55555555432 222 256678899999999999999999998765421 1222 233445666
Q ss_pred HhhccCCHHHHHHHhcccCC----CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccc----
Q 004644 499 MYAKCGRIQNAELLFKDADP----VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG---- 570 (740)
Q Consensus 499 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g---- 570 (740)
..+....++.-...++.+.| |+..+-..++.+....|+++-.-.++..++..|..-+.....-++...++..
T Consensus 407 licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~ 486 (625)
T KOG4422|consen 407 LICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPL 486 (625)
T ss_pred HHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCC
Confidence 67777788888888888775 5555566667777777777777777777776663333332222222221111
Q ss_pred ----------------hHHH-HHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhC-------CCCCCHHH
Q 004644 571 ----------------LVDG-GLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM-------KIKPNAGI 626 (740)
Q Consensus 571 ----------------~~~~-a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~ 626 (740)
++.+ ....-.++++. ... ....++.+-++.|.|+.++|.+++.-. +..|.-..
T Consensus 487 tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~-~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnA 563 (625)
T KOG4422|consen 487 TPEREQLQVAFAKCAADIKEAYESQPIRQRAQ-DWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNA 563 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc-cCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhh
Confidence 0111 11111222211 222 334577777788888888887776433 22232222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHc
Q 004644 627 WGTLLGACRMHQNIKLGRIAVEKLSE 652 (740)
Q Consensus 627 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 652 (740)
.--+.......++...|..+++-+..
T Consensus 564 m~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 564 MAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444555566677777777666644
No 61
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=7.7e-11 Score=106.88 Aligned_cols=267 Identities=14% Similarity=0.189 Sum_probs=174.8
Q ss_pred CCChHHHHHHHHhcccCCcchH---HHHHHHHhcCCChHHHHHHhcccC-CCch------hHHHHHHHHHHhcCChHHHH
Q 004644 184 NGEMHLASKFFEAMEERDVVSW---NLMLDGYVELDDLDSAWKFFQKIP-EQNV------VSWVTMLSGYARNGRMLEAR 253 (740)
Q Consensus 184 ~g~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~-~~~~------~~~~~l~~~~~~~g~~~~A~ 253 (740)
+.+.++|.++|-+|.+.|+.|+ ..+++.|.+.|..|.|+++++.+. .||. .+...|+.-|...|-++.|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3566667777766666555443 355666677777777777777665 3332 35667788888899999999
Q ss_pred HHhccCCCCCc---chHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhH--------HHHHHHHhhhCCHHHHHHHHhhCC
Q 004644 254 RLFDQMPIRNV---VAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSW--------TTMIDGYVRIAKLDEARRLLDQMP 322 (740)
Q Consensus 254 ~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~~l~~~~~~~~~~~~a~~~~~~~~ 322 (740)
.+|..+.+.+. .+...|+..|-+..+|++|+++-+++.+-+..++ --+...+....+.+.|...+.+..
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 99988775333 3556688888899999999988887765333333 234444555667788888887765
Q ss_pred C---CchhHHHHHHHHHHhcCChhHHHHHHhhcCCCChh----hHHHHHHHHHHcCCHHHHHHHHHhccc--CCHHHHHH
Q 004644 323 Y---KNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVV----CWNVMIKGYAQCGRMDEAINLFRQMVN--KDIVTWNT 393 (740)
Q Consensus 323 ~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 393 (740)
. ..+.+...++......|+++.|.+.++.+...|+. +...|..+|.+.|+.++....+..+.+ +++..-..
T Consensus 208 qa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~ 287 (389)
T COG2956 208 QADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELM 287 (389)
T ss_pred hhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHH
Confidence 4 34455566777788888888888888877665553 455666778888888888888877764 34444444
Q ss_pred HHHHHHccCCHHHHH-HHHHhhCCCCCeecHHHHHHHHHc---CCChHHHHHHHHHHHHCC
Q 004644 394 MIAGYAQIRQMDDAV-KIFEEMGKRRNTVSWNALISGFLQ---NEFHLDALKIFVLMTQEG 450 (740)
Q Consensus 394 l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~~ 450 (740)
+...-....-.+.|. .+.+.+...|+...+..++..... .|...+.+..++.|..+.
T Consensus 288 l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 288 LADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred HHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence 444333333344443 344556667777777777776654 344556666666666543
No 62
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=1.3e-10 Score=105.43 Aligned_cols=307 Identities=16% Similarity=0.169 Sum_probs=176.5
Q ss_pred HcCCHHHHHHHHHhcccCCHHHH---HHHHHHHHccCCHHHHHHHHHhhCCCCCee------cHHHHHHHHHcCCChHHH
Q 004644 369 QCGRMDEAINLFRQMVNKDIVTW---NTMIAGYAQIRQMDDAVKIFEEMGKRRNTV------SWNALISGFLQNEFHLDA 439 (740)
Q Consensus 369 ~~g~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~li~~~~~~~~~~~A 439 (740)
-+.+.++|+++|-+|.+.|+.|+ -+|+..|.+.|..|.|+++.+.+..+||.. ....|..-|...|-++.|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 35788999999999998777665 468889999999999999999997677643 244567778889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccCCC
Q 004644 440 LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPV 519 (740)
Q Consensus 440 ~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 519 (740)
..+|..+...+.- -....-.++..|-...++++|...-..+.+.+-.+... -+.
T Consensus 127 E~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~---eIA---------------------- 180 (389)
T COG2956 127 EDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV---EIA---------------------- 180 (389)
T ss_pred HHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh---HHH----------------------
Confidence 9999988765421 12233344444555555555555555554443322110 000
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC--cchHH
Q 004644 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV-TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL--VEHYA 596 (740)
Q Consensus 520 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~ 596 (740)
..|--+...+....+.+.|..++.+..+. .|+.+ .-..+.+.....|++..|.+.++.+.+. +|+ .++..
T Consensus 181 --qfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ---n~~yl~evl~ 253 (389)
T COG2956 181 --QFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ---NPEYLSEVLE 253 (389)
T ss_pred --HHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh---ChHHHHHHHH
Confidence 11222333344445555566666655553 33332 3333444455556666666666555442 333 44455
Q ss_pred HHhhhhhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHH--hcCC
Q 004644 597 CMIDLLSRAGRLDEAFEMVKGM-KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHA--EAGR 673 (740)
Q Consensus 597 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~ 673 (740)
.|..+|...|+.++...++..+ ...++...-..+...-..+.-.+.|...+.+-+.-.|.--+.|..+.--.. ..|+
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~ 333 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGR 333 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccc
Confidence 5556666666666666655443 333333333333332222333445555555555566655554444433333 3466
Q ss_pred chHHHHHHHHHhhCCCccCCcccEEEEcCEEEEEe
Q 004644 674 WDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFL 708 (740)
Q Consensus 674 ~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~ 708 (740)
|.+.+.+++.|....++..|.+.--.-+-+.|.|.
T Consensus 334 ~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~ 368 (389)
T COG2956 334 AKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLY 368 (389)
T ss_pred hhhhHHHHHHHHHHHHhhcCCceecccCCcceeee
Confidence 88888888888877777767555444444455443
No 63
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=5.3e-09 Score=98.26 Aligned_cols=271 Identities=11% Similarity=0.050 Sum_probs=189.2
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHH---HHHHHHccCCHHHHHHHHHhhC--CCCCeecHHHHHH
Q 004644 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNT---MIAGYAQIRQMDDAVKIFEEMG--KRRNTVSWNALIS 428 (740)
Q Consensus 354 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~li~ 428 (740)
+.|+.....+.+.+...|+.++|+..|++..-.|+.+..+ ....+.+.|+.+.-..+...+- .......|..-+.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQ 308 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhh
Confidence 4577777788888888888888888888876655544433 3444566777777666666551 1123333444444
Q ss_pred HHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHH
Q 004644 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508 (740)
Q Consensus 429 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 508 (740)
.....++++.|+.+-.+.++.+ |. +...+-.-...+...|+.++
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~--~r----------------------------------~~~alilKG~lL~~~~R~~~ 352 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSE--PR----------------------------------NHEALILKGRLLIALERHTQ 352 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccC--cc----------------------------------cchHHHhccHHHHhccchHH
Confidence 4555666666666655544332 11 11112222344556788888
Q ss_pred HHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHH-Hhh-cccchHHHHHHHHHHhh
Q 004644 509 AELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL-SAC-SHVGLVDGGLKLFECMT 583 (740)
Q Consensus 509 A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll-~a~-~~~g~~~~a~~~~~~~~ 583 (740)
|.-.|+... |-+..+|..++.+|...|++.+|.-+-+..... ++.+..+...+. ..| ....--++|.++++...
T Consensus 353 A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L 431 (564)
T KOG1174|consen 353 AVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL 431 (564)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh
Confidence 888887654 678889999999999999999999988877663 233444544442 233 33445678999998875
Q ss_pred hhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcch
Q 004644 584 EVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCY 661 (740)
Q Consensus 584 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 661 (740)
.++|. ......+.+++.+.|+..+++.+++.. ...||....+.|.......+.+..|...|..++.++|++-...
T Consensus 432 ---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 432 ---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred ---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 47888 778888999999999999999999664 6789999999999999999999999999999999999986544
Q ss_pred HHH
Q 004644 662 ALL 664 (740)
Q Consensus 662 ~~l 664 (740)
..|
T Consensus 509 ~Gl 511 (564)
T KOG1174|consen 509 RGL 511 (564)
T ss_pred HHH
Confidence 433
No 64
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=2.1e-08 Score=102.20 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=83.7
Q ss_pred cccchHHHHHHHccCChhHHHHHHhhccC-----------CCc-cchHHHHHHHHcCCChhHHHHHHhhCCCCCcchHHH
Q 004644 15 VFNQNKKITQLGKSGRVEEAIKIFSQMSQ-----------KNT-VTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNS 82 (740)
Q Consensus 15 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-----------~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 82 (740)
-.+|..+++++.+..+++-|.-.+-.+.. .++ ..-...+-.....|.+++|..+|.+..+ |..
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DL 831 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDL 831 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHH
Confidence 34677888888888888887766654431 122 3333344445677889999999988876 556
Q ss_pred HHHHHhcCCChHHHHHHHHhccCCC-cccHHHHHHHHHcCCChHHHHHHHhhCCC
Q 004644 83 MIAGYLHNDKVKEARELFDKMFRPD-LFSWALMITCYTRKGELEKARELFDLLPN 136 (740)
Q Consensus 83 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 136 (740)
|-..|...|.|++|+++-+.--+.. ..||...+.-+-..+|.+.|+++|++.+.
T Consensus 832 lNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~ 886 (1416)
T KOG3617|consen 832 LNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGV 886 (1416)
T ss_pred HHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCC
Confidence 6677888899999998877654422 34777888888888999999999998743
No 65
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=1.3e-09 Score=100.10 Aligned_cols=438 Identities=14% Similarity=0.100 Sum_probs=217.3
Q ss_pred HHcCCChHHHHHHHhhC---CCCCChhhHHHHHHHHHhcCChhhHHHHHhcCCC---CCcccHHHHHHHHHhCCChHHHH
Q 004644 118 YTRKGELEKARELFDLL---PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS---KNIVSWNSMLSGYTKNGEMHLAS 191 (740)
Q Consensus 118 ~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~ 191 (740)
+....|+..|+.+++-. +......+-..++..|...|++++|...+.-+.+ ++...|-.+..++.-.|.+.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 44556677776666654 2222234445566777777888888777776542 44456666777777777777777
Q ss_pred HHHHhcccCCcchHHHHHHHHhcCCChHHHHHHhcccCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCC--cchHHH
Q 004644 192 KFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRN--VVAWNA 269 (740)
Q Consensus 192 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 269 (740)
.+-.+..+ ++-....+.....+.++-++-..+++.+.+.. .-..+|+....-.-.+.+|++++.++...+ ....|.
T Consensus 112 ~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNV 189 (557)
T KOG3785|consen 112 SIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNV 189 (557)
T ss_pred HHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHH
Confidence 76665532 23333444555566777777666666654222 233445555444456788888888876433 334444
Q ss_pred -HHHHHHHcCCHHHHHHHHhhCCC--CCh-hhHHHHHHHHhhhCCHHHHHHHHhhCCCCchhHHHHHHHHHHh-----cC
Q 004644 270 -MIAAYVQRGQIEEAARLFIEMPE--RNP-VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQ-----NK 340 (740)
Q Consensus 270 -l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~-----~~ 340 (740)
+.-+|.+..-++-+.+++.-..+ ||+ ...+..+....+.=+-..|.+-...+....... ...+..+++ ..
T Consensus 190 y~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-~~f~~~l~rHNLVvFr 268 (557)
T KOG3785|consen 190 YMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-YPFIEYLCRHNLVVFR 268 (557)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-chhHHHHHHcCeEEEe
Confidence 34466677767666666555442 332 333332222222211112222111111110000 000111111 11
Q ss_pred ChhHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHccCC-------HHHHHHHHHh
Q 004644 341 RMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQ-------MDDAVKIFEE 413 (740)
Q Consensus 341 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~ 413 (740)
+-+.|++++-.+...-+.....|+--|.+.++..+|..+.++.....|.-|-.-+...+..|+ ..-|...|+-
T Consensus 269 ngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffql 348 (557)
T KOG3785|consen 269 NGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQL 348 (557)
T ss_pred CCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH
Confidence 222333333222222223333333344444555555544444433333222222222222221 2223333333
Q ss_pred hCCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHH
Q 004644 414 MGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVG 493 (740)
Q Consensus 414 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 493 (740)
++.+.. ....-|...+..+ .+.-...++.....+..+...-...|.+.+
T Consensus 349 VG~Sa~----------------------------ecDTIpGRQsmAs---~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~ 397 (557)
T KOG3785|consen 349 VGESAL----------------------------ECDTIPGRQSMAS---YFFLSFQFDDVLTYLNSIESYFTNDDDFNL 397 (557)
T ss_pred hccccc----------------------------ccccccchHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCcchhhh
Confidence 321100 0111233322222 222233344444444444443333444443
Q ss_pred HHHHHHhhccCCHHHHHHHhcccCCC---CcchHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHH-HHHHhhcc
Q 004644 494 NSLITMYAKCGRIQNAELLFKDADPV---DVISWNS-LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI-GVLSACSH 568 (740)
Q Consensus 494 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~-l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~ll~a~~~ 568 (740)
.+..+++..|...+|+++|-.+..+ |-.+|.+ +..+|.+.++++.|.+++-++. -+.+..+.. .+..-|..
T Consensus 398 -N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk 473 (557)
T KOG3785|consen 398 -NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYK 473 (557)
T ss_pred -HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHH
Confidence 4677888888899999888877743 4455554 5577888888888877765542 233334433 34456888
Q ss_pred cchHHHHHHHHHHhhhhcCCcCCcchHH
Q 004644 569 VGLVDGGLKLFECMTEVYAIEPLVEHYA 596 (740)
Q Consensus 569 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 596 (740)
.+.+=-|-+.|+.+.. ..|+++.|.
T Consensus 474 ~~eFyyaaKAFd~lE~---lDP~pEnWe 498 (557)
T KOG3785|consen 474 ANEFYYAAKAFDELEI---LDPTPENWE 498 (557)
T ss_pred HHHHHHHHHhhhHHHc---cCCCccccC
Confidence 8888888888887754 567766654
No 66
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.33 E-value=2.3e-09 Score=108.96 Aligned_cols=428 Identities=14% Similarity=0.115 Sum_probs=231.1
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCCHHHHHHHHhhCCC----C-ChhhHHHH
Q 004644 230 EQNVVSWVTMLSGYARNGRMLEARRLFDQMPI---RNVVAWNAMIAAYVQRGQIEEAARLFIEMPE----R-NPVSWTTM 301 (740)
Q Consensus 230 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~~~~~l 301 (740)
..++.+|..|.-+...+|+++.+.+.|++... .....|+.+...|...|.-..|+.+++.-.. | ++..+...
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 35667777777788888888888888877653 3445777788888888887788888777653 2 22333333
Q ss_pred HHHHh-hhCCHHHHHHHHhhCCCCchhHHHHHHHHHHhcCChhHHHHHHhhcCCCChhhHHHHHHHHHH-----------
Q 004644 302 IDGYV-RIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ----------- 369 (740)
Q Consensus 302 ~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----------- 369 (740)
...|. +.+..++++.+..++....- ...+ ...+..+..++-+|..
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~----------~~~~-------------~l~~~~~l~lGi~y~~~A~~a~~~seR 456 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLG----------GQRS-------------HLKPRGYLFLGIAYGFQARQANLKSER 456 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhh----------hhhh-------------hhhhhHHHHHHHHHHhHhhcCCChHHH
Confidence 33333 44566666665555432100 0000 0112222222222211
Q ss_pred cCCHHHHHHHHHhccc---CCHHHHHHHHHHHHccCCHHHHHHHHHhh---CCCCCeecHHHHHHHHHcCCChHHHHHHH
Q 004644 370 CGRMDEAINLFRQMVN---KDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIF 443 (740)
Q Consensus 370 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 443 (740)
.-...++++.++++++ .|+.....+..-|+..++.+.|.+..++. ....+...|..+...+...+++.+|+.+.
T Consensus 457 ~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv 536 (799)
T KOG4162|consen 457 DALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVV 536 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 1123455555555543 23333444444555666666666665554 22345555666666666666666666665
Q ss_pred HHHHHC-CCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHh-CCCCChhHHHHHHHHhhccCCHHHHHHHhcccC----
Q 004644 444 VLMTQE-GKKADHSTLACALSACAHLAALQLGRQIHHLAIKS-GYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD---- 517 (740)
Q Consensus 444 ~~m~~~-~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---- 517 (740)
+..... |. |......-+..-...++.+.+......+... .-.+. ....|+-....+.+..+.
T Consensus 537 d~al~E~~~--N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~----------~q~~~~~g~~~~lk~~l~la~~ 604 (799)
T KOG4162|consen 537 DAALEEFGD--NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYG----------VQQTLDEGKLLRLKAGLHLALS 604 (799)
T ss_pred HHHHHHhhh--hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhh----------HhhhhhhhhhhhhhcccccCcc
Confidence 544332 11 0000000111111122333332222221110 00000 000111122222222221
Q ss_pred -CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--------HHHHHHHHhhcccchHHHHHHHHHHhhhhcCC
Q 004644 518 -PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP--------VTFIGVLSACSHVGLVDGGLKLFECMTEVYAI 588 (740)
Q Consensus 518 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--------~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 588 (740)
+.+...-..-+.+... -+...+..-.. |...-+.|.. ..|......+...+..++|+..+.++.. +
T Consensus 605 q~~~a~s~sr~ls~l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~ 679 (799)
T KOG4162|consen 605 QPTDAISTSRYLSSLVA-SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---I 679 (799)
T ss_pred cccccchhhHHHHHHHH-hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---c
Confidence 1222211111111111 11110000000 1111122221 2344555667888888999888887754 4
Q ss_pred cCC-cchHHHHhhhhhccCChHHHHHHHH-hCCCCCCHH-HHHHHHHHHHhcCCHHHHHH--HHHHhHccCCCCCcchHH
Q 004644 589 EPL-VEHYACMIDLLSRAGRLDEAFEMVK-GMKIKPNAG-IWGTLLGACRMHQNIKLGRI--AVEKLSELEPQKTSCYAL 663 (740)
Q Consensus 589 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~ 663 (740)
.|. ...|...+..+...|.+++|.+.|. .+...|+.+ +..++...+...|+...|.. .+..+++++|.++++|+.
T Consensus 680 ~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~ 759 (799)
T KOG4162|consen 680 DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY 759 (799)
T ss_pred chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH
Confidence 555 6667777888999999999998774 456778555 78888888888898888887 999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHhhCCCccCCcccEE
Q 004644 664 LSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWI 698 (740)
Q Consensus 664 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~ 698 (740)
||.++.+.|+.++|.+.|....+.... .|-.+|.
T Consensus 760 LG~v~k~~Gd~~~Aaecf~aa~qLe~S-~PV~pFs 793 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQAAECFQAALQLEES-NPVLPFS 793 (799)
T ss_pred HHHHHHHccchHHHHHHHHHHHhhccC-CCccccc
Confidence 999999999999999999988654432 3444444
No 67
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=1.2e-08 Score=100.66 Aligned_cols=436 Identities=14% Similarity=0.122 Sum_probs=204.8
Q ss_pred HHHHHcCCChHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCChhhHHHHHhcCCC--CCcccHHHHHHHHHhCCChHHH
Q 004644 115 ITCYTRKGELEKARELFDLL--PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS--KNIVSWNSMLSGYTKNGEMHLA 190 (740)
Q Consensus 115 ~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A 190 (740)
++.+...+++++|.+...++ ..|.+..++..-+-+..+.++|++|..+.+.-.. .+.+-+..-.-+..+.+..++|
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHH
Confidence 34555667777777777666 3345566666666667777777777765554321 1111111222233456667777
Q ss_pred HHHHHhcccCCcchHHHHHHHHhcCCChHHHHHHhcccCCCchhHHHHHHHHH-HhcCChHHHHHHhccCCCCCcchHHH
Q 004644 191 SKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGY-ARNGRMLEARRLFDQMPIRNVVAWNA 269 (740)
Q Consensus 191 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~ 269 (740)
+..++...+.+..+...-+..+.++|++++|..+|+.+...+...+.....+- ...+-.-.+. +.+..+.....+|..
T Consensus 99 lk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e~syel 177 (652)
T KOG2376|consen 99 LKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPEDSYEL 177 (652)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCcchHHH
Confidence 77666444444445555556666666666666666666533322222221111 1111111111 233333222223322
Q ss_pred ---HHHHHHHcCCHHHHHHHHhhCCC--------CCh--hhHHHHHHHHhhhCCHHHHHHHHhhCCCCchhHHHHHHHHH
Q 004644 270 ---MIAAYVQRGQIEEAARLFIEMPE--------RNP--VSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGY 336 (740)
Q Consensus 270 ---l~~~~~~~g~~~~A~~~~~~~~~--------~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 336 (740)
....+...|++.+|+++++...+ .|. .-+-. .=......++..+
T Consensus 178 ~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~-----------------------el~~IrvQlayVl 234 (652)
T KOG2376|consen 178 LYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEE-----------------------ELNPIRVQLAYVL 234 (652)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHH-----------------------HHHHHHHHHHHHH
Confidence 23344556666666666655410 000 00000 0001112233344
Q ss_pred HhcCChhHHHHHHhhcC---CCCh----hhHHHHHHHHHHcCCHH-HHHHHHHhcccC---------------CHHHHHH
Q 004644 337 VQNKRMDEANQIFDKIG---THDV----VCWNVMIKGYAQCGRMD-EAINLFRQMVNK---------------DIVTWNT 393 (740)
Q Consensus 337 ~~~~~~~~A~~~~~~~~---~~~~----~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~---------------~~~~~~~ 393 (740)
...|+.++|..++..+. +.|. ..-|.|+.+-....-.+ .++..++..... ....-+.
T Consensus 235 Q~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~ 314 (652)
T KOG2376|consen 235 QLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA 314 (652)
T ss_pred HHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555444332 1122 11222221111000000 122222222111 1111122
Q ss_pred HHHHHHccCCHHHHHHHHHhhCCCCCeecHHHHHHHHHc--CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhh
Q 004644 394 MIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ--NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAAL 471 (740)
Q Consensus 394 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~ 471 (740)
++.+| .+..+.+.++............+.+++....+ ...+.++..++...-.....-........+......|++
T Consensus 315 lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 315 LLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred HHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Confidence 33333 23445555555555323233344444443322 224666666666654433222233444455566777888
Q ss_pred HHHHHHHH--------HHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccC------CCC----cchHHHHHHHHHh
Q 004644 472 QLGRQIHH--------LAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD------PVD----VISWNSLIAGYAI 533 (740)
Q Consensus 472 ~~a~~~~~--------~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~----~~~~~~l~~~~~~ 533 (740)
+.|..++. .+.+.+. .+.+..+++.+|.+.++-+.|..++.+.. .+. ...|.-.+..-.+
T Consensus 393 ~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 88888777 3333332 34455667777888777777776666543 111 1234444455566
Q ss_pred cCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHH
Q 004644 534 NGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFE 580 (740)
Q Consensus 534 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~ 580 (740)
+|+.++|..+++++.+.. ++|..+...++.++++. +++.|..+-+
T Consensus 471 ~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred cCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 788888888888887742 45555666666666554 4555555444
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.29 E-value=1.3e-08 Score=101.39 Aligned_cols=449 Identities=14% Similarity=0.134 Sum_probs=240.1
Q ss_pred cCCChHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCChhhHHHHHhcCCC---CCcccHHHHHHHHHhCCChHHHHHHH
Q 004644 120 RKGELEKARELFDLL--PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS---KNIVSWNSMLSGYTKNGEMHLASKFF 194 (740)
Q Consensus 120 ~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~ 194 (740)
..+++...++..+.+ ..+....+....+-.+...|+-++|......... ...+.|..++-.+....++++|++.|
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 456677777666666 4455556666666667778888888888776654 45567888888888888888888888
Q ss_pred HhcccCCcchHHHHHHHHhcCCChHHHHHHhcccCCCchhHHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHH
Q 004644 195 EAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP---IRNVVAWNAMI 271 (740)
Q Consensus 195 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~ 271 (740)
..+...+ +.|...+..+...-++.|+++.....-.+.. ......|..++
T Consensus 99 ~nAl~~~----------------------------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~A 150 (700)
T KOG1156|consen 99 RNALKIE----------------------------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFA 150 (700)
T ss_pred HHHHhcC----------------------------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHH
Confidence 8876533 3455556666655666666665554444333 23446777788
Q ss_pred HHHHHcCCHHHHHHHHhhCCC-----CChhhHHH------HHHHHhhhCCHHHHHHHHhhCCCCchhHHHHHHHHHHhcC
Q 004644 272 AAYVQRGQIEEAARLFIEMPE-----RNPVSWTT------MIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340 (740)
Q Consensus 272 ~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 340 (740)
.++.-.|++..|..+++...+ |+...+.- ........|.++.|.+.+......-+
T Consensus 151 vs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~-------------- 216 (700)
T KOG1156|consen 151 VAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIV-------------- 216 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHH--------------
Confidence 888888888888877776552 33332221 11223344445555444433211000
Q ss_pred ChhHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHhccc--CCHHHHHH-HHHHHHccCCHHHHH-HHHHhhCC
Q 004644 341 RMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN--KDIVTWNT-MIAGYAQIRQMDDAV-KIFEEMGK 416 (740)
Q Consensus 341 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-l~~~~~~~~~~~~A~-~~~~~~~~ 416 (740)
.....--.-...+.+.+++++|..++...+. ||...|+. +..++.+-.+.-++. .+|.....
T Consensus 217 --------------Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 217 --------------DKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred --------------HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 0111223345567788888888888888876 44344433 333333333444444 55655522
Q ss_pred CCC-eecHHHHHHHHHcCCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHH
Q 004644 417 RRN-TVSWNALISGFLQNEFH-LDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGN 494 (740)
Q Consensus 417 ~~~-~~~~~~li~~~~~~~~~-~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 494 (740)
.+. ...-..+--......+. +..-.+++.+.+.|+++-...+.++..- . .... +..
T Consensus 283 ~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~---p---~k~~----------------~le 340 (700)
T KOG1156|consen 283 KYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKD---P---EKVA----------------FLE 340 (700)
T ss_pred cCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhc---h---hHhH----------------HHH
Confidence 211 11111111112222223 3334556667777776654444433211 0 0000 111
Q ss_pred HHHHHhhccCCHHHHHHHhc--ccCCCCcchHHH--HHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHhhccc
Q 004644 495 SLITMYAKCGRIQNAELLFK--DADPVDVISWNS--LIAGYAINGNATEAIKLFEEMVMEGVAPDPV-TFIGVLSACSHV 569 (740)
Q Consensus 495 ~l~~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~a~~~~ 569 (740)
.++..|...-.-.......+ +..+|....|.. ++..+-..|+++.|....+..+.. .|+.+ .|..-.+.+.|.
T Consensus 341 ~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~ 418 (700)
T KOG1156|consen 341 KLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHA 418 (700)
T ss_pred HHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhc
Confidence 12222211110000000000 122445555543 555666777777777777777763 56554 555556667777
Q ss_pred chHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhCC-CCCCH--------HHHHHHH--HHHHhcC
Q 004644 570 GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMK-IKPNA--------GIWGTLL--GACRMHQ 638 (740)
Q Consensus 570 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~--------~~~~~l~--~~~~~~g 638 (740)
|++++|-.++++..+. -.||...-+.-+.-..|+.+.++|.++..... ..-+. -.|..+- .+|.++|
T Consensus 419 G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~ 496 (700)
T KOG1156|consen 419 GLLDEAAAWLDEAQEL--DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQN 496 (700)
T ss_pred CChHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHH
Confidence 7777777777777653 33443333345566677777777777654431 00011 1344443 3456666
Q ss_pred CHHHHHHHHHHh
Q 004644 639 NIKLGRIAVEKL 650 (740)
Q Consensus 639 ~~~~a~~~~~~~ 650 (740)
++.+|.+-+..+
T Consensus 497 k~g~ALKkfh~i 508 (700)
T KOG1156|consen 497 KLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHHhhH
Confidence 666666544443
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.28 E-value=2.8e-10 Score=110.93 Aligned_cols=211 Identities=16% Similarity=0.070 Sum_probs=149.4
Q ss_pred hhHHHHHHHHHHHHhC-CCC--ChhHHHHHHHHhhccCCHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHH
Q 004644 470 ALQLGRQIHHLAIKSG-YVN--DLFVGNSLITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKL 543 (740)
Q Consensus 470 ~~~~a~~~~~~~~~~g-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~ 543 (740)
..+.+..-+..++... ..| ....+..+...|...|+.++|...|++.. |.++..|+.++..+...|++++|++.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444444454455321 222 24567778888999999999999998764 67788999999999999999999999
Q ss_pred HHHHHHCCCCCCh-HHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhC-C-C
Q 004644 544 FEEMVMEGVAPDP-VTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM-K-I 620 (740)
Q Consensus 544 ~~~m~~~~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~ 620 (740)
|++.++ +.|+. .++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.++.. . .
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999998 56764 5778888888999999999999999876 4555322222223345678899999998553 2 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-------HccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004644 621 KPNAGIWGTLLGACRMHQNIKLGRIAVEKL-------SELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689 (740)
Q Consensus 621 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 689 (740)
.|+...| .+ .....|+...+ ..++.+ .++.|+.+.+|..||.+|...|++++|...+++..+.++
T Consensus 196 ~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3333222 22 22234554333 233333 356677788999999999999999999999998876553
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=1.2e-10 Score=105.62 Aligned_cols=224 Identities=12% Similarity=0.049 Sum_probs=169.9
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccC
Q 004644 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG 504 (740)
Q Consensus 425 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 504 (740)
.+..+|.+.|.+.+|...|+.-+..- |-+.+|..|...|.+..
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~-------------------------------------~~~dTfllLskvY~rid 270 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQF-------------------------------------PHPDTFLLLSKVYQRID 270 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcC-------------------------------------CchhHHHHHHHHHHHhc
Confidence 36666777777777766666554443 33334455666777777
Q ss_pred CHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHhhcccchHHHHHHHHH
Q 004644 505 RIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV-TFIGVLSACSHVGLVDGGLKLFE 580 (740)
Q Consensus 505 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~ 580 (740)
+.+.|+.+|.+.. |-|+.....+...+...++.++|+++|+...+. .|+.+ ...++...+...|+++-|..+|+
T Consensus 271 QP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYR 348 (478)
T KOG1129|consen 271 QPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYR 348 (478)
T ss_pred cHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHH
Confidence 7888888887655 445555556778888888899999999988874 45443 55566667788888999999999
Q ss_pred HhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhC---CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhHccCC
Q 004644 581 CMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM---KIKPNA--GIWGTLLGACRMHQNIKLGRIAVEKLSELEP 655 (740)
Q Consensus 581 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 655 (740)
++.+. |+ -+++.|+.++-.+.-.++++-++.-|+.. ...|+. .+|..|.......||+..|.+.++-++.-+|
T Consensus 349 RiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~ 426 (478)
T KOG1129|consen 349 RILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA 426 (478)
T ss_pred HHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence 88875 43 24567788887778888888888776543 123443 4799998888899999999999999999999
Q ss_pred CCCcchHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004644 656 QKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689 (740)
Q Consensus 656 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 689 (740)
++.+++++|+-+-.+.|+.++|..+++..++..+
T Consensus 427 ~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 427 QHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred chHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 9999999999999999999999999998876543
No 71
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.27 E-value=8.9e-08 Score=98.96 Aligned_cols=93 Identities=14% Similarity=0.085 Sum_probs=66.8
Q ss_pred HHhhhhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhHccCCCCC---cchHHHHHHHHh
Q 004644 597 CMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQ---NIKLGRIAVEKLSELEPQKT---SCYALLSNMHAE 670 (740)
Q Consensus 597 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~ 670 (740)
.|...|.+.|+++.|..++.++++.|+..+..-|+..++.+. |+-++....+++.++.|..+ ..|...+.+..+
T Consensus 712 RLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q 791 (1088)
T KOG4318|consen 712 RLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQ 791 (1088)
T ss_pred HHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhh
Confidence 456688899999999999999998888888888877776553 55666677777777766554 334444455555
Q ss_pred cCCchHHHHHHHHHhhCCC
Q 004644 671 AGRWDEVEKVRVSMEGSGA 689 (740)
Q Consensus 671 ~g~~~~a~~~~~~~~~~~~ 689 (740)
....+-|.+.+.+..+...
T Consensus 792 ~~qkkaAkk~f~r~eeq~~ 810 (1088)
T KOG4318|consen 792 TEQKKAAKKCFERLEEQLT 810 (1088)
T ss_pred HHHHHHHHHHHHHHHHccC
Confidence 5555577888888877643
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=2e-07 Score=92.26 Aligned_cols=181 Identities=13% Similarity=0.112 Sum_probs=112.7
Q ss_pred HHHHHHhhccCCHHHHHHHhcccCCCC-cchHHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHhhcc
Q 004644 494 NSLITMYAKCGRIQNAELLFKDADPVD-VISWNSLIAGY--AINGNATEAIKLFEEMVMEGVAPDP--VTFIGVLSACSH 568 (740)
Q Consensus 494 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~a~~~ 568 (740)
+.++.+|. +..+.++++-...++.. ...+.+++... .+...+..|.+++...-+. .|.. +.....+.....
T Consensus 313 ~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 313 NALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHh
Confidence 44555554 44556666666665333 22333333322 2333577788887777663 4554 344445555678
Q ss_pred cchHHHHHHHHH--------HhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhC--------CCCCCHH-HHHHHH
Q 004644 569 VGLVDGGLKLFE--------CMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM--------KIKPNAG-IWGTLL 631 (740)
Q Consensus 569 ~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~-~~~~l~ 631 (740)
.|+++.|++++. .+.+ .+.. +.+...++.++.+.+.-+.|..++.+. ..++... +|.-+.
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~-~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa 465 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILE-AKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAA 465 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhh-hccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHh
Confidence 999999999988 4433 2333 445677888888887766555554332 2222222 233333
Q ss_pred HHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHH
Q 004644 632 GACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRV 682 (740)
Q Consensus 632 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 682 (740)
..-.++|+.++|...++++++.+|++......+.-+|+... .+.|..+-+
T Consensus 466 ~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k 515 (652)
T KOG2376|consen 466 EFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSK 515 (652)
T ss_pred HHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhh
Confidence 34457799999999999999999999999999998888764 455555443
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=9.4e-08 Score=90.09 Aligned_cols=300 Identities=11% Similarity=-0.008 Sum_probs=199.6
Q ss_pred HHHcCCHHHHHHHHHhc-----ccCCHHHHHHHHHHHHccCCHHHHHHHHHhhC-CCCCee-cHHHHHHHHHcCCChHHH
Q 004644 367 YAQCGRMDEAINLFRQM-----VNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMG-KRRNTV-SWNALISGFLQNEFHLDA 439 (740)
Q Consensus 367 ~~~~g~~~~A~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~-~~~~li~~~~~~~~~~~A 439 (740)
.+-.++...|...+-.+ ...|+....++..++...|+.++|...|++.. ..|..+ +.......+.+.|+.+..
T Consensus 206 q~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 206 QMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhH
Confidence 33344444444444322 23567777888888888888888888888763 122211 111122222334444333
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccC--
Q 004644 440 LKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD-- 517 (740)
Q Consensus 440 ~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 517 (740)
-.+...+..... . ...-|-.-+.......+++.|+.+-++..
T Consensus 286 ~~L~~~Lf~~~~----------------------------------~--ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~ 329 (564)
T KOG1174|consen 286 SALMDYLFAKVK----------------------------------Y--TASHWFVHAQLLYDEKKFERALNFVEKCIDS 329 (564)
T ss_pred HHHHHHHHhhhh----------------------------------c--chhhhhhhhhhhhhhhhHHHHHHHHHHHhcc
Confidence 333333221110 0 00001111122334566777777777655
Q ss_pred -CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchH
Q 004644 518 -PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP-DPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHY 595 (740)
Q Consensus 518 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 595 (740)
+.++..+-.-+..+...|++++|.-.|+..+. ..| +-.+|.+++..|...|...+|.-.-+...+.+ ..+..+.
T Consensus 330 ~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~--~~sA~~L 405 (564)
T KOG1174|consen 330 EPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF--QNSARSL 405 (564)
T ss_pred CcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--hcchhhh
Confidence 45555666666788899999999999999887 465 45699999999999999999998888776642 3334555
Q ss_pred HHHh-hhhhc-cCChHHHHHHHHh-CCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhc
Q 004644 596 ACMI-DLLSR-AGRLDEAFEMVKG-MKIKPNAG-IWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEA 671 (740)
Q Consensus 596 ~~l~-~~~~~-~g~~~~A~~~~~~-~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 671 (740)
..++ ..+.- ..--++|.+++++ +...|+-. ....+...|...|..+.++..+++.+...||+. .++.||+++...
T Consensus 406 tL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~~A~ 484 (564)
T KOG1174|consen 406 TLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-LHNHLGDIMRAQ 484 (564)
T ss_pred hhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH-HHHHHHHHHHHh
Confidence 5453 33333 3345789999866 46788766 566777779999999999999999999999975 789999999999
Q ss_pred CCchHHHHHHHHHhhCCCccCCcccEEEEcCEEEEEecCCCCCCChHHHHHHHHHHHHHhhc
Q 004644 672 GRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRN 733 (740)
Q Consensus 672 g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~~~ 733 (740)
+.+.+|...|..... ..|+.+...+-|+.|++++++
T Consensus 485 Ne~Q~am~~y~~ALr--------------------------~dP~~~~sl~Gl~~lEK~~~~ 520 (564)
T KOG1174|consen 485 NEPQKAMEYYYKALR--------------------------QDPKSKRTLRGLRLLEKSDDE 520 (564)
T ss_pred hhHHHHHHHHHHHHh--------------------------cCccchHHHHHHHHHHhccCC
Confidence 999999999997763 346667777788888877764
No 74
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.25 E-value=4.3e-09 Score=98.98 Aligned_cols=251 Identities=13% Similarity=0.056 Sum_probs=170.0
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHH
Q 004644 433 NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512 (740)
Q Consensus 433 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 512 (740)
.|++.+|..+..+-.+.+..|- ..|.....+.-+.|+.+.+..+...+.+.--.++..+.-+........|+...|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 4566666666665444443332 334445556667777777777777777765556666777777777788888888776
Q ss_pred hcc---cCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-------hHHHHHHHHhhcccchHHHHHHHHHHh
Q 004644 513 FKD---ADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD-------PVTFIGVLSACSHVGLVDGGLKLFECM 582 (740)
Q Consensus 513 ~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-------~~~~~~ll~a~~~~g~~~~a~~~~~~~ 582 (740)
..+ +.|.++........+|.+.|++.+...+..+|.+.|+--| ..++.+++.-+.+.+..+.-...++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 664 3477777888888888888888888888888888876544 346677777777777777767777776
Q ss_pred hhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcch
Q 004644 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCY 661 (740)
Q Consensus 583 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 661 (740)
-++ .+-++..-.+++.-+.++|+.++|.+++++. +-.-|.. .. ..-.+..-++.+.=++..++.++..|++|..+
T Consensus 256 pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~-~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~ 331 (400)
T COG3071 256 PRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LC-RLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLL 331 (400)
T ss_pred cHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HH-HHHhhcCCCCchHHHHHHHHHHHhCCCChhHH
Confidence 664 3333445577788888888888888877543 3233333 11 12245566677777777777777777777777
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004644 662 ALLSNMHAEAGRWDEVEKVRVSMEGSG 688 (740)
Q Consensus 662 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 688 (740)
.+||.+|.+.+.|.+|.+.++.....+
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~~~ 358 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALKLR 358 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 777777777777777777777554433
No 75
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.24 E-value=1.6e-08 Score=95.18 Aligned_cols=279 Identities=13% Similarity=0.092 Sum_probs=156.2
Q ss_pred cCChhHHHHHHhhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHhcccC--C--HHHHHHHHHHHHccCCHHHHHHHH
Q 004644 339 NKRMDEANQIFDKIGT---HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNK--D--IVTWNTMIAGYAQIRQMDDAVKIF 411 (740)
Q Consensus 339 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~--~~~~~~l~~~~~~~~~~~~A~~~~ 411 (740)
.|++.+|++...+-.. .....|..-+.+-.+.|+.+.+-.++.++-++ | ....-+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4666666666655322 22233444445566778888888888887653 3 344555666777788888888777
Q ss_pred Hhh--CCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCC
Q 004644 412 EEM--GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVND 489 (740)
Q Consensus 412 ~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~ 489 (740)
+++ ..+.++........+|.+.|++.....++..|.+.|.-.+...-. + .
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~-----------------l-----------e 228 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR-----------------L-----------E 228 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH-----------------H-----------H
Confidence 766 224456666777778888888888888888887777554433210 0 1
Q ss_pred hhHHHHHHHHhhccCCHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhh
Q 004644 490 LFVGNSLITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566 (740)
Q Consensus 490 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~ 566 (740)
..+++.+++-....+..+.-...+++.+ ..++..-.+++.-+.+.|+.++|.++.++..+.+..|+-.+ +-.|
T Consensus 229 ~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~ 304 (400)
T COG3071 229 QQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPR 304 (400)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhh
Confidence 1123333333333333333334444444 34455566667777778888888888888777766666222 2234
Q ss_pred cccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004644 567 SHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPNAGIWGTLLGACRMHQNIKLGRI 645 (740)
Q Consensus 567 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~ 645 (740)
..-++...=++..+...+.++-.| ..+..|+.+|.+.+.|.+|.+.++.. +..|+...|.-+..++...|+.+.|..
T Consensus 305 l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 305 LRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred cCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHH
Confidence 444444444444444444333333 34444555555555555555555432 344455555555555555555555555
Q ss_pred HHHHhH
Q 004644 646 AVEKLS 651 (740)
Q Consensus 646 ~~~~~~ 651 (740)
+.+.++
T Consensus 383 ~r~e~L 388 (400)
T COG3071 383 VRREAL 388 (400)
T ss_pred HHHHHH
Confidence 544444
No 76
>PRK12370 invasion protein regulator; Provisional
Probab=99.24 E-value=1e-09 Score=117.29 Aligned_cols=193 Identities=14% Similarity=0.034 Sum_probs=144.6
Q ss_pred ChhHHHHHHHHhhccCCHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHH
Q 004644 489 DLFVGNSLITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV-TFIGVLS 564 (740)
Q Consensus 489 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~ 564 (740)
+...+..+..++...|++++|...|++.. |.+...|..++..+...|++++|+..++++.+. .|+.. .+..++.
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~ 414 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLW 414 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHH
Confidence 45566677778888899999999998755 566778999999999999999999999999984 56543 3334444
Q ss_pred hhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHH
Q 004644 565 ACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPNAG-IWGTLLGACRMHQNIK 641 (740)
Q Consensus 565 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~ 641 (740)
.+...|++++|+..++++.+. ..|+ +..+..++.+|...|++++|.+.++++ +..|+.. .++.+...+...| +
T Consensus 415 ~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~ 490 (553)
T PRK12370 415 ITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--E 490 (553)
T ss_pred HHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--H
Confidence 566789999999999998763 2454 556778889999999999999999876 3455544 4555655666666 4
Q ss_pred HHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004644 642 LGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688 (740)
Q Consensus 642 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 688 (740)
.|...++++++..-..+.....+..+|.-.|+-+.+..+ +++.+.+
T Consensus 491 ~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 491 RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 777778777765433333444588899999999988888 6665443
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.23 E-value=5.7e-10 Score=96.77 Aligned_cols=162 Identities=17% Similarity=0.175 Sum_probs=141.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhh
Q 004644 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP-VTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMID 600 (740)
Q Consensus 523 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 600 (740)
+...+.-+|...|+...|..-+++.++. .|+. .++..+...|...|..+.|.+.|+.+.+ +.|+ -+..|..+.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 3556778899999999999999999984 6765 4888888899999999999999999875 6777 778899999
Q ss_pred hhhccCChHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchH
Q 004644 601 LLSRAGRLDEAFEMVKGMKIKP----NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDE 676 (740)
Q Consensus 601 ~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 676 (740)
.++..|++++|...|+..-..| -..+|..++.+..+.|+.+.|+..++++++++|+++.....++..+...|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 9999999999999997764344 334788888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCC
Q 004644 677 VEKVRVSMEGSGA 689 (740)
Q Consensus 677 a~~~~~~~~~~~~ 689 (740)
|.-.++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999998887765
No 78
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=6.2e-06 Score=86.73 Aligned_cols=296 Identities=15% Similarity=0.189 Sum_probs=141.8
Q ss_pred CChhhHHHHHHHHhhhCCHHHHHHHHhhCCCCchh-----HHHHHHHHHHhcCChhHHHHHHhhcCCCChhhHHHHHHHH
Q 004644 293 RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIA-----AQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGY 367 (740)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 367 (740)
.|+...+..+.++...+-..+-+++++++.-.+.. ....++-.-.-.-+.....+..+++..-|.. .+....
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~---~ia~ia 1058 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAP---DIAEIA 1058 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCch---hHHHHH
Confidence 35555556666677777777777777765422110 0111111111222333334444443322221 123334
Q ss_pred HHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHccCCHHHHHHHHHhhCCCCCeecHHHHHHHHHcCCChHHHHHHHHHHH
Q 004644 368 AQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMT 447 (740)
Q Consensus 368 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 447 (740)
...+-+++|..+|++.-- +..+.+.|+ -..+..+.|.++-++.. .+..|+.+..+-.+.|...+|++-|-+
T Consensus 1059 i~~~LyEEAF~ifkkf~~-n~~A~~VLi---e~i~~ldRA~efAe~~n---~p~vWsqlakAQL~~~~v~dAieSyik-- 1129 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFDM-NVSAIQVLI---ENIGSLDRAYEFAERCN---EPAVWSQLAKAQLQGGLVKDAIESYIK-- 1129 (1666)
T ss_pred hhhhHHHHHHHHHHHhcc-cHHHHHHHH---HHhhhHHHHHHHHHhhC---ChHHHHHHHHHHHhcCchHHHHHHHHh--
Confidence 445555666666654321 111112222 12234444444444432 234566666666666666666554432
Q ss_pred HCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccC----------
Q 004644 448 QEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD---------- 517 (740)
Q Consensus 448 ~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------- 517 (740)
..|...|..++..+++.|.++.-..++..+.+..-+|.+ -+.|+-+|++.+++.+-++++..-.
T Consensus 1130 ----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdr 1203 (1666)
T KOG0985|consen 1130 ----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDR 1203 (1666)
T ss_pred ----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHH
Confidence 124445556666666666666666666555555444432 3445556666666555544432100
Q ss_pred -------------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhh
Q 004644 518 -------------PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584 (740)
Q Consensus 518 -------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 584 (740)
-.++.-|..+...+...|+++.|.+.-++. .+..||--+..+|...+.+.-|. |.-
T Consensus 1204 cf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCG 1272 (1666)
T KOG0985|consen 1204 CFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICG 1272 (1666)
T ss_pred HhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcC
Confidence 012234555566666666666665554442 23346666666666555443332 111
Q ss_pred hcCCcCCcchHHHHhhhhhccCChHHHHHHHHhC
Q 004644 585 VYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618 (740)
Q Consensus 585 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 618 (740)
.++.--.+-...++..|...|.++|-+.+++.-
T Consensus 1273 -L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1273 -LNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred -ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 011112333456677777777777777776553
No 79
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=4.1e-10 Score=102.20 Aligned_cols=238 Identities=14% Similarity=0.107 Sum_probs=173.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHhh-CCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhh
Q 004644 392 NTMIAGYAQIRQMDDAVKIFEEM-GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAA 470 (740)
Q Consensus 392 ~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~ 470 (740)
+.+..+|.+.|-+.+|.+.|+.. ...|-+.||..|-..|.+..++..|+.+|.+-+. ..|..+|+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~---------- 294 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLL---------- 294 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhh----------
Confidence 44566666666666666666554 3345556666666666666666666666665433 3455555422
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 004644 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEM 547 (740)
Q Consensus 471 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 547 (740)
-....+...++.++|.++++... +.++.+..++...|.-.++++-|+..|+++
T Consensus 295 ------------------------g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 295 ------------------------GQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred ------------------------hhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 22233444456666666666543 556667777788888999999999999999
Q ss_pred HHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC--cchHHHHhhhhhccCChHHHHHHHHhC-CCCCC-
Q 004644 548 VMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL--VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPN- 623 (740)
Q Consensus 548 ~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~- 623 (740)
++.|+ -+...|+.+.-+|...+++|-++..|+++... ..+|+ .+.|..+.......|++.-|.+.|+-. ...|+
T Consensus 351 LqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 351 LQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 99984 45667888888999999999999999999874 34466 778999999999999999999988654 34454
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHH
Q 004644 624 AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNM 667 (740)
Q Consensus 624 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 667 (740)
...++.|.-.-.+.|+++.|+..+.-+..+.|+-.+...+|+-+
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence 44788888777899999999999999999999977766665443
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.20 E-value=9.9e-10 Score=111.17 Aligned_cols=227 Identities=18% Similarity=0.193 Sum_probs=158.2
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHh-----CC-CCCh-hHHHHHHHHhhccCCHHHHHHHhcccC--------CC---C
Q 004644 459 ACALSACAHLAALQLGRQIHHLAIKS-----GY-VNDL-FVGNSLITMYAKCGRIQNAELLFKDAD--------PV---D 520 (740)
Q Consensus 459 ~~~l~~~~~~~~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~---~ 520 (740)
..+...|...|+++.|...+..+++. |. .|.+ ...+.+...|...+++++|..+|+++. +. -
T Consensus 203 ~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~v 282 (508)
T KOG1840|consen 203 RNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAV 282 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 33444455555555555544444332 21 1111 122356778888888888888877653 22 2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCC-ChH-HHHHHHHhhcccchHHHHHHHHHHhhhhcCCcC---
Q 004644 521 VISWNSLIAGYAINGNATEAIKLFEEMVME-----GVAP-DPV-TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP--- 590 (740)
Q Consensus 521 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~~~p-~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--- 590 (740)
..+++.|...|...|++++|...+++..+- |..+ ... -++.+...|.+.+.+++|..+++...+.+.-.|
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~ 362 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED 362 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence 356777888899999999888888876541 2222 222 455667779999999999999998887543222
Q ss_pred --C-cchHHHHhhhhhccCChHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHcc----
Q 004644 591 --L-VEHYACMIDLLSRAGRLDEAFEMVKGMK---------IKPN-AGIWGTLLGACRMHQNIKLGRIAVEKLSEL---- 653 (740)
Q Consensus 591 --~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 653 (740)
. ..+++.|+.+|...|++++|.+++++.- ..+. ...++.|...|...++++.|...|.....+
T Consensus 363 ~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~ 442 (508)
T KOG1840|consen 363 NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLC 442 (508)
T ss_pred chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHh
Confidence 2 5679999999999999999999987751 1232 335777888898899999999988887654
Q ss_pred CCCC---CcchHHHHHHHHhcCCchHHHHHHHHHh
Q 004644 654 EPQK---TSCYALLSNMHAEAGRWDEVEKVRVSME 685 (740)
Q Consensus 654 ~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 685 (740)
.|+. ...|..|+.+|.++|++++|.++-..+.
T Consensus 443 g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 443 GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3444 4568899999999999999999888775
No 81
>PF13041 PPR_2: PPR repeat family
Probab=99.16 E-value=9.6e-11 Score=78.93 Aligned_cols=50 Identities=38% Similarity=0.685 Sum_probs=47.7
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcc
Q 004644 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568 (740)
Q Consensus 519 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~ 568 (740)
||+.+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999874
No 82
>PRK12370 invasion protein regulator; Provisional
Probab=99.15 E-value=2.8e-09 Score=113.89 Aligned_cols=177 Identities=10% Similarity=-0.005 Sum_probs=142.9
Q ss_pred cCCHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHhhcccchHHHHHHH
Q 004644 503 CGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP-VTFIGVLSACSHVGLVDGGLKL 578 (740)
Q Consensus 503 ~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~a~~~~g~~~~a~~~ 578 (740)
.+++++|...+++.. |.+..+|..+...+...|++++|+..|+++++. .|+. ..+..+..++...|++++|+..
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 456888998888765 667788999999999999999999999999985 5664 4677788889999999999999
Q ss_pred HHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhCC--CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHccC
Q 004644 579 FECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGMK--IKPNAG-IWGTLLGACRMHQNIKLGRIAVEKLSELE 654 (740)
Q Consensus 579 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 654 (740)
++++.+ +.|. ...+..++..+...|++++|.+.+++.. ..|+.. .+..+..++...|+.++|+..++++....
T Consensus 395 ~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 395 INECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 999986 5666 3333444555777899999999987752 235444 46667777788999999999999999999
Q ss_pred CCCCcchHHHHHHHHhcCCchHHHHHHHHHhh
Q 004644 655 PQKTSCYALLSNMHAEAGRWDEVEKVRVSMEG 686 (740)
Q Consensus 655 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 686 (740)
|++......++..|...| ++|...++.+.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 998888889999999888 588887777654
No 83
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.14 E-value=5.9e-09 Score=99.28 Aligned_cols=162 Identities=17% Similarity=0.167 Sum_probs=119.5
Q ss_pred hHHHHHHHHhhccCCHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHhh
Q 004644 491 FVGNSLITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD-PVTFIGVLSAC 566 (740)
Q Consensus 491 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~a~ 566 (740)
..+..+...|...|++++|.+.+++.. +.+...+..++..+...|++++|++.|++.......|. ...+..+..++
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 345556667777778888877777554 45556777888888888999999999998887432232 34566677778
Q ss_pred cccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 004644 567 SHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKP-NAGIWGTLLGACRMHQNIKLG 643 (740)
Q Consensus 567 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 643 (740)
...|++++|...|+...+. .|+ ...+..++..+...|++++|.+.+++. ...| +...+..+...+...|+.+.|
T Consensus 146 ~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 222 (234)
T TIGR02521 146 LKAGDFDKAEKYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAA 222 (234)
T ss_pred HHcCCHHHHHHHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHH
Confidence 8889999999999888763 444 567788888899999999998888765 2223 445666677777888999999
Q ss_pred HHHHHHhHccCC
Q 004644 644 RIAVEKLSELEP 655 (740)
Q Consensus 644 ~~~~~~~~~~~p 655 (740)
....+.+....|
T Consensus 223 ~~~~~~~~~~~~ 234 (234)
T TIGR02521 223 QRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHhhCc
Confidence 888887766654
No 84
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.13 E-value=3.7e-07 Score=91.41 Aligned_cols=129 Identities=13% Similarity=0.115 Sum_probs=88.2
Q ss_pred CCChH--HHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhCC-C-CCCHHHH
Q 004644 553 APDPV--TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGMK-I-KPNAGIW 627 (740)
Q Consensus 553 ~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~ 627 (740)
+|... |+..+...+-+.|+++.|..+++.++ +..|+ ++.|..=+..+...|.+++|..++++.. . .||..+-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~IN 442 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAIN 442 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHH
Confidence 45554 34455667888999999999999986 46788 8888888899999999999999998774 2 3443332
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHccCCCCCc-------ch--HHHHHHHHhcCCchHHHHHHHHH
Q 004644 628 GTLLGACRMHQNIKLGRIAVEKLSELEPQKTS-------CY--ALLSNMHAEAGRWDEVEKVRVSM 684 (740)
Q Consensus 628 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~--~~l~~~~~~~g~~~~a~~~~~~~ 684 (740)
.--..-..+.++.++|..++.+...-.-+-.. .| .-=|.+|.++|+|-+|++=+..+
T Consensus 443 sKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 22223334667889999888877654431110 11 22356788888988887654443
No 85
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.13 E-value=8.2e-08 Score=97.96 Aligned_cols=132 Identities=17% Similarity=0.204 Sum_probs=102.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhh
Q 004644 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD-PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMID 600 (740)
Q Consensus 523 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 600 (740)
.|......+...++.++|...+.+... +.|- ...|......+...|...+|.+.|.... .++|+ +.....++.
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHH
Confidence 466677777888888888877777765 3343 3355555556677888899998888775 47888 788889999
Q ss_pred hhhccCChHHHHH--HHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCc
Q 004644 601 LLSRAGRLDEAFE--MVKG-MKIKP-NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTS 659 (740)
Q Consensus 601 ~~~~~g~~~~A~~--~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 659 (740)
++.+.|+..-|.. ++.. +...| +...|..++......|+.+.|...|.-++++++.+|.
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999998777766 6644 46667 5568999999999999999999999999999988874
No 86
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.11 E-value=2.7e-07 Score=95.54 Aligned_cols=207 Identities=15% Similarity=0.251 Sum_probs=138.6
Q ss_pred cCCCcccHHHHHHHHHcCCChHHHHHHHhhC---CCCCChhhHHHHHHHHHhcCChhhHHHHHhcCCCCCcccHHHHHHH
Q 004644 104 FRPDLFSWALMITCYTRKGELEKARELFDLL---PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSG 180 (740)
Q Consensus 104 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~ 180 (740)
..|+..||..++.-|+..|+.+.|- +|.-| ..+-...+++.++......++.+.+. .|-+.+|..|..+
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~a 92 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLKA 92 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHHH
Confidence 4588888888888888888888887 77766 22445567888888888888776665 5777899999999
Q ss_pred HHhCCChHHHHHHHHhcccCCcchHHHHHHHHhcCCChHHHHHHhcccC--CCchhHHHHHHHHHHhcCChHHHHHHhcc
Q 004644 181 YTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIP--EQNVVSWVTMLSGYARNGRMLEARRLFDQ 258 (740)
Q Consensus 181 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 258 (740)
|.+.|+... ++..++ ....+...+...|.-..-..++.++. |.........+....-.|-++.+++++..
T Consensus 93 yr~hGDli~-fe~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~ 164 (1088)
T KOG4318|consen 93 YRIHGDLIL-FEVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAK 164 (1088)
T ss_pred HHhccchHH-HHHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999998765 332222 12223334444454444444444433 33333344455556667888888888888
Q ss_pred CCCC---CcchHHHHHHHHHHcC-CHHHHHHHHhhCCC-CChhhHHHHHHHHhhhCCHHHHHHHHhhCCCCchhH
Q 004644 259 MPIR---NVVAWNAMIAAYVQRG-QIEEAARLFIEMPE-RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAA 328 (740)
Q Consensus 259 ~~~~---~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 328 (740)
++.. ++... .+.-+.... .+++-....+...+ +++.++..++.+-...|+.+.|..++..|.+.|.++
T Consensus 165 ~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 165 VPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred CCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 7732 21111 233333333 34555555555555 899999999999999999999999999999888744
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.07 E-value=2.9e-08 Score=86.41 Aligned_cols=197 Identities=16% Similarity=0.087 Sum_probs=152.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccC
Q 004644 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCG 504 (740)
Q Consensus 425 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 504 (740)
.|..+|.+.|+...|...+++.++.. +.+..++..+...|.+.|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~D------------------------------------Ps~~~a~~~~A~~Yq~~G 83 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHD------------------------------------PSYYLAHLVRAHYYQKLG 83 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC------------------------------------cccHHHHHHHHHHHHHcC
Confidence 34556666666666666666655543 234455667778888999
Q ss_pred CHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHhhcccchHHHHHHHHH
Q 004644 505 RIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP-DPVTFIGVLSACSHVGLVDGGLKLFE 580 (740)
Q Consensus 505 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~ 580 (740)
..+.|.+.|++.. |.+..+.|..+..+|..|++++|...|++....-.-| -..||..+.-+..+.|+.+.|..+|+
T Consensus 84 e~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ 163 (250)
T COG3063 84 ENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLK 163 (250)
T ss_pred ChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHH
Confidence 9999999998654 7788889999999999999999999999998742222 24578888888889999999999999
Q ss_pred HhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCC
Q 004644 581 CMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGMK--IKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK 657 (740)
Q Consensus 581 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 657 (740)
+..+ +.|+ ......+.......|++-.|..+++... ..+...+.-..+..-..-||.+.+-+.-.++-...|..
T Consensus 164 raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 164 RALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 9886 4666 6677889999999999999999887763 34666665555566677899998888888888899987
Q ss_pred Ccc
Q 004644 658 TSC 660 (740)
Q Consensus 658 ~~~ 660 (740)
.+.
T Consensus 241 ~e~ 243 (250)
T COG3063 241 EEY 243 (250)
T ss_pred HHH
Confidence 653
No 88
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=1e-08 Score=101.07 Aligned_cols=228 Identities=15% Similarity=0.140 Sum_probs=166.4
Q ss_pred ChhHHHHHHHHhhccCCHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH--------
Q 004644 489 DLFVGNSLITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV-------- 557 (740)
Q Consensus 489 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------- 557 (740)
+...|.-|.-.....++-..|+..+.++. |.|..+.-+|.-.|...|.-.+|+..++..+... |...
T Consensus 318 haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~--p~y~~l~~a~~~ 395 (579)
T KOG1125|consen 318 HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNK--PKYVHLVSAGEN 395 (579)
T ss_pred HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--ccchhccccCcc
Confidence 34445555555555666666666666544 6677788888889999999999999999887642 1110
Q ss_pred -HHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 004644 558 -TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM-KIKP-NAGIWGTLLGAC 634 (740)
Q Consensus 558 -~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 634 (740)
.+.. -....+........++|-.+....+..++++.+.+|+-+|.-.|.+++|.+.|+.. ..+| |...|+-|+..+
T Consensus 396 ~~~~~-~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtL 474 (579)
T KOG1125|consen 396 EDFEN-TKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATL 474 (579)
T ss_pred ccccC-CcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHh
Confidence 0000 02234455566677778777776676678888999999999999999999999775 6778 555899999999
Q ss_pred HhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCcccEEEEcCEEEEEecCCCCC
Q 004644 635 RMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQ 714 (740)
Q Consensus 635 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~ 714 (740)
....+.++|+.+|.+++++.|....+.+.||-.|...|.+.||.+.+=.......+.. -..+..+
T Consensus 475 AN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~---------------~~~~~~~ 539 (579)
T KOG1125|consen 475 ANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSR---------------NHNKAPM 539 (579)
T ss_pred cCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccc---------------ccccCCc
Confidence 9989999999999999999999999999999999999999999998877664432200 0011112
Q ss_pred CChHHHHHHHHHHHHHhhcCC
Q 004644 715 CRTAEICNTLKTLAAQIRNTP 735 (740)
Q Consensus 715 ~~~~~~~~~l~~l~~~~~~~~ 735 (740)
+ ++.|.+.|...-.-|...+
T Consensus 540 ~-se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 540 A-SENIWQTLRLALSAMNRSD 559 (579)
T ss_pred c-hHHHHHHHHHHHHHcCCch
Confidence 2 6788888885555555554
No 89
>PF13041 PPR_2: PPR repeat family
Probab=99.04 E-value=5.1e-10 Score=75.37 Aligned_cols=50 Identities=30% Similarity=0.451 Sum_probs=46.6
Q ss_pred CCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhh
Q 004644 418 RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAH 467 (740)
Q Consensus 418 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~ 467 (740)
||.++||++|.+|++.|++++|.++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999998864
No 90
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.4e-07 Score=92.53 Aligned_cols=373 Identities=15% Similarity=0.103 Sum_probs=196.6
Q ss_pred HHHHhhhCCHHHHHHHHhhCCCC---chhHHHHHHHHHHhcCChhHHHHHHhhc---CCCChhhHHHHHHHHHHcCCHHH
Q 004644 302 IDGYVRIAKLDEARRLLDQMPYK---NIAAQTAMISGYVQNKRMDEANQIFDKI---GTHDVVCWNVMIKGYAQCGRMDE 375 (740)
Q Consensus 302 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~ 375 (740)
..+.+..|+++.|...|...+.. +-..+..-..+|...|++++|.+--.+- .|.=+..|+....++.-.|++++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 34566778888888888776533 2234445566777778877777655543 23334567777777778888888
Q ss_pred HHHHHHhcccC---CHHHHHHHHHHHHccCCHHH---HHHHHHhhCCCC------CeecHHHHHHHHHcC----------
Q 004644 376 AINLFRQMVNK---DIVTWNTMIAGYAQIRQMDD---AVKIFEEMGKRR------NTVSWNALISGFLQN---------- 433 (740)
Q Consensus 376 A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~------~~~~~~~li~~~~~~---------- 433 (740)
|+.-|.+-++. +...++.+..++.......+ --.++..+...| ....|..++..+-++
T Consensus 89 A~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 89 AILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 88888877653 33455556555511100000 000111110000 001122222211110
Q ss_pred CChHHHHHHHH-----HHHHCC-------CCCC-----------HH-----------HHHHHHHHhhhhhhhHHHHHHHH
Q 004644 434 EFHLDALKIFV-----LMTQEG-------KKAD-----------HS-----------TLACALSACAHLAALQLGRQIHH 479 (740)
Q Consensus 434 ~~~~~A~~~~~-----~m~~~~-------~~p~-----------~~-----------~~~~~l~~~~~~~~~~~a~~~~~ 479 (740)
.+...|.-.+. .+...+ ..|. .. -...+..+.-...++..+.+-+.
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 00001111000 000000 1110 00 01122223333344444444444
Q ss_pred HHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccCCCCc---chHHH-------HHHHHHhcCChHHHHHHHHHHHH
Q 004644 480 LAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDV---ISWNS-------LIAGYAINGNATEAIKLFEEMVM 549 (740)
Q Consensus 480 ~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~-------l~~~~~~~g~~~~A~~~~~~m~~ 549 (740)
..+... .++.-++....+|...|.+..+...-....+... .-++. +..+|...++++.|+..|.+...
T Consensus 249 ~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 249 KALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred HHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 444443 3444445555555555555555444333221111 11111 23344445566666666666555
Q ss_pred CCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC-CCCC-CHHH
Q 004644 550 EGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKP-NAGI 626 (740)
Q Consensus 550 ~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 626 (740)
....|+..+ +....+++........ -+.|. ..--..-+.-+.+.|++.+|+..+.++ ...| |...
T Consensus 327 e~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l 394 (539)
T KOG0548|consen 327 EHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARL 394 (539)
T ss_pred hhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHH
Confidence 433333221 2223333333333221 23444 111222366778889999999988765 3456 5557
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004644 627 WGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688 (740)
Q Consensus 627 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 688 (740)
|.....+|.+-|++..|+..++..++++|+....|..-+-++....+|++|.+.+.+-.+..
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888888889999999999999999999999999999999999999999999998776544
No 91
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.03 E-value=8e-08 Score=93.75 Aligned_cols=202 Identities=11% Similarity=-0.059 Sum_probs=137.2
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccC---CCCcchHHHHHHHHHhcCC
Q 004644 460 CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGN 536 (740)
Q Consensus 460 ~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~ 536 (740)
..-..+...|+.+.|...+..+++.. +.+...++.+...|...|++++|...|++.. |.+..+|..++.++...|+
T Consensus 69 ~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 147 (296)
T PRK11189 69 ERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGR 147 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 33334555566666666666655543 3457788899999999999999999998764 5667889999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHH--HHH
Q 004644 537 ATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA--FEM 614 (740)
Q Consensus 537 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A--~~~ 614 (740)
+++|++.|++..+. .|+..........+...++.++|...|...... ..|+...+ .++ ....|++.++ .+.
T Consensus 148 ~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~--~~~~~~~~-~~~--~~~lg~~~~~~~~~~ 220 (296)
T PRK11189 148 YELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK--LDKEQWGW-NIV--EFYLGKISEETLMER 220 (296)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--CCccccHH-HHH--HHHccCCCHHHHHHH
Confidence 99999999999984 666542222222344577899999999776542 33432222 233 2334555433 333
Q ss_pred HH-hCCC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCC-CCCcchHHHHHHHH
Q 004644 615 VK-GMKI----KP-NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEP-QKTSCYALLSNMHA 669 (740)
Q Consensus 615 ~~-~~~~----~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~ 669 (740)
+. .... .| ....|..++..+...|++++|+..++++++++| +..++-..+..+..
T Consensus 221 ~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~ 282 (296)
T PRK11189 221 LKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELAL 282 (296)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 32 2221 12 234789999999999999999999999999997 55555555544433
No 92
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.01 E-value=3.7e-08 Score=100.00 Aligned_cols=161 Identities=16% Similarity=0.149 Sum_probs=116.7
Q ss_pred HHHHHHHHhhccCCHHHHHHHhcccC----------CCCc-chHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCh-
Q 004644 492 VGNSLITMYAKCGRIQNAELLFKDAD----------PVDV-ISWNSLIAGYAINGNATEAIKLFEEMVME---GVAPDP- 556 (740)
Q Consensus 492 ~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~- 556 (740)
+++.|...|.+.|++++|...+++.. .+.+ ...+.++..+...+++++|..++++..+. -+.++.
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 34555666777777766665555432 2222 23566777888889999999998876542 123333
Q ss_pred ---HHHHHHHHhhcccchHHHHHHHHHHhhhhc-----CCcCC-cchHHHHhhhhhccCChHHHHHHHHhC--------C
Q 004644 557 ---VTFIGVLSACSHVGLVDGGLKLFECMTEVY-----AIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM--------K 619 (740)
Q Consensus 557 ---~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~ 619 (740)
-++..+...+.+.|++++|.++|+.+++.. +..+. -.+++.|...|.+.+++.+|.++|... +
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 378888999999999999999999988742 22333 456788999999999999888877554 2
Q ss_pred CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHc
Q 004644 620 IKPNAG-IWGTLLGACRMHQNIKLGRIAVEKLSE 652 (740)
Q Consensus 620 ~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 652 (740)
..|+.. ++..|...|...|+++.|+...++++.
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 445555 699999999999999999999998863
No 93
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.98 E-value=5.3e-07 Score=83.05 Aligned_cols=56 Identities=5% Similarity=0.016 Sum_probs=38.5
Q ss_pred HHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004644 632 GACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGS 687 (740)
Q Consensus 632 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 687 (740)
.+++..|++.+|++...++++++|+|..++...+.+|.-..+||+|..-+++..+-
T Consensus 315 ~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 315 TCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred ecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 34455667777777777777777777777777777777777777777777666543
No 94
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=2.1e-07 Score=91.27 Aligned_cols=166 Identities=16% Similarity=0.087 Sum_probs=121.1
Q ss_pred HHHHhhccCCHHHHHHHhcccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHhhcccchHHH
Q 004644 496 LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV-TFIGVLSACSHVGLVDG 574 (740)
Q Consensus 496 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~a~~~~g~~~~ 574 (740)
+..+|.+.++.+.|+..|.+...+... -....+....++++...+...- +.|... -.-.-...+.+.|++..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence 455788889999999999875522111 1222333455666666555544 445432 22333667899999999
Q ss_pred HHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004644 575 GLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPNAG-IWGTLLGACRMHQNIKLGRIAVEKLS 651 (740)
Q Consensus 575 a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~ 651 (740)
|+..|.+++.. .|+ ...|+...-+|.+.|.+.+|+.-.+.. ...|+.. .|.--+.++....+++.|...|++++
T Consensus 377 Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 377 AVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999874 476 888999999999999999998877554 4556554 46555666777789999999999999
Q ss_pred ccCCCCCcchHHHHHHHHhc
Q 004644 652 ELEPQKTSCYALLSNMHAEA 671 (740)
Q Consensus 652 ~~~p~~~~~~~~l~~~~~~~ 671 (740)
+.+|++..+-..+...+...
T Consensus 454 e~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 454 ELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred hcCchhHHHHHHHHHHHHHh
Confidence 99999988888887777754
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=1.2e-06 Score=79.24 Aligned_cols=301 Identities=15% Similarity=0.131 Sum_probs=191.4
Q ss_pred chHHHHHHHccCChhHHHHHHhhccCCCc---cchHHHHHHHHcCCChhHHHHHHhhCCCCCcc--hH-HHHHHHHhcCC
Q 004644 18 QNKKITQLGKSGRVEEAIKIFSQMSQKNT---VTYNSMISAYAKNGRVNDARKLFEQMPQRNLV--SW-NSMIAGYLHND 91 (740)
Q Consensus 18 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~-~~l~~~~~~~g 91 (740)
+++.+..+.+..++++|++++..-.+.++ .....|+.+|.+..++..|-..|+++.+..|. -| ..-++.+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 45677788999999999999987665443 46677888999999999999999998764333 22 23466778889
Q ss_pred ChHHHHHHHHhccC-CCcc--cHHHHHHHHHcCCChHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHhcCCC
Q 004644 92 KVKEARELFDKMFR-PDLF--SWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS 168 (740)
Q Consensus 92 ~~~~A~~~~~~~~~-~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 168 (740)
.+..|+++...+.. ++.. +.-.-.....+.+|+..++.+.++.+...+..+.+..+.+..+.|+++.|.+-|+...+
T Consensus 93 i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 93 IYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHh
Confidence 99999999888865 3222 22222234556789999999999998777888888899999999999999999998764
Q ss_pred ----CCcccHHHHHHHHHhCCChHHHHHHHHhcccCCcchHHHHHHHHhcCC-C---hHHHHHHhcccCCCchhHHHHHH
Q 004644 169 ----KNIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNLMLDGYVELD-D---LDSAWKFFQKIPEQNVVSWVTML 240 (740)
Q Consensus 169 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-~---~~~a~~~~~~~~~~~~~~~~~l~ 240 (740)
....+|+.. -+..+.|+++.|++...++.+....-.-.+.-+..-.| | +.....++. ..-..+++.-.
T Consensus 173 vsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~---Sal~eAfNLKa 248 (459)
T KOG4340|consen 173 VSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ---SALVEAFNLKA 248 (459)
T ss_pred hcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH---HHHHHHhhhhh
Confidence 223456544 45557899999999888876411100000000000000 0 000000000 00012233334
Q ss_pred HHHHhcCChHHHHHHhccCCCC-----CcchHHHHHHHHHHcCCHHHHHHHHhhCC---CCChhhHHHHHHHHhhhCCHH
Q 004644 241 SGYARNGRMLEARRLFDQMPIR-----NVVAWNAMIAAYVQRGQIEEAARLFIEMP---ERNPVSWTTMIDGYVRIAKLD 312 (740)
Q Consensus 241 ~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 312 (740)
..+.+.|+++.|.+.+-.|+++ |+++...+.-.-. .+++.+..+-+.-+. .-...||..++-.|++..-++
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~ 327 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFD 327 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHh
Confidence 4567788888888888888753 5666554433221 233333333332222 234468888888888888888
Q ss_pred HHHHHHhhCCC
Q 004644 313 EARRLLDQMPY 323 (740)
Q Consensus 313 ~a~~~~~~~~~ 323 (740)
.|-.++.+-..
T Consensus 328 lAADvLAEn~~ 338 (459)
T KOG4340|consen 328 LAADVLAENAH 338 (459)
T ss_pred HHHHHHhhCcc
Confidence 88777766443
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=1.6e-06 Score=78.39 Aligned_cols=300 Identities=15% Similarity=0.117 Sum_probs=187.9
Q ss_pred hHHHHHHHHcCCChhHHHHHHhhCCCCCc---chHHHHHHHHhcCCChHHHHHHHHhccC--CCcccH-HHHHHHHHcCC
Q 004644 49 YNSMISAYAKNGRVNDARKLFEQMPQRNL---VSWNSMIAGYLHNDKVKEARELFDKMFR--PDLFSW-ALMITCYTRKG 122 (740)
Q Consensus 49 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~l~~~~~~~~ 122 (740)
+.+.+..+.+..++++|++++..-.++++ ...+.++.+|....++..|..+|++.-. |...-| .-..+.+...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 44555666788899999999887766544 3467889999999999999999998854 433323 23456777788
Q ss_pred ChHHHHHHHhhCCCCCChhhHHHH--HHHHHhcCChhhHHHHHhcCC-CCCcccHHHHHHHHHhCCChHHHHHHHHhccc
Q 004644 123 ELEKARELFDLLPNKEDTACWNAM--VAGYAKIGNYNEAKKLLDAMP-SKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE 199 (740)
Q Consensus 123 ~~~~a~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 199 (740)
.+..|+.+...+++.+.......- ..+....+++..++.++++.+ +.+..+.+..+....+.|+++.|++-|..+.+
T Consensus 93 i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 93 IYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHh
Confidence 899999999998765433322222 223455788999999999988 46777788888888899999999999998876
Q ss_pred C---CcchHHHHHHHHhcCCChHHHHHHhcccCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC-------CcchHHH
Q 004644 200 R---DVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-------NVVAWNA 269 (740)
Q Consensus 200 ~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~ 269 (740)
. ++-.-..+.-+..+.++++.|.+...+++.....-.-.+. .|...+... .+.+..+ =+..+|.
T Consensus 173 vsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElg-----IGm~tegiD-vrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 173 VSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELG-----IGMTTEGID-VRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred hcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccC-----ccceeccCc-hhcccchHHHHHHHHHHHhhh
Confidence 2 3444455566667777888877776665411100000000 000000000 0000000 0123344
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCC-----CChhhHHHHHHHHhhhCCHHHHHHHHhhCCCCchhHHHHHHHHHHhcCChhH
Q 004644 270 MIAAYVQRGQIEEAARLFIEMPE-----RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDE 344 (740)
Q Consensus 270 l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 344 (740)
-...+.+.|+++.|.+.+-.|.. .||+|...+.-.-... ++.++..-+
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~-~p~~g~~KL-------------------------- 299 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDA-RPTEGFEKL-------------------------- 299 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccC-CccccHHHH--------------------------
Confidence 44556778888888888888873 4777776654332221 122211111
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHhc
Q 004644 345 ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383 (740)
Q Consensus 345 A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 383 (740)
+++-.+.|-...++..++-.||++.-++.|..++-+-
T Consensus 300 --qFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 300 --QFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred --HHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 1111222456678888888999998888888887654
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.89 E-value=1.4e-06 Score=80.28 Aligned_cols=177 Identities=15% Similarity=0.161 Sum_probs=79.1
Q ss_pred HHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHH---HHHhhhCCHHHHHHHHhhCCCCchh---HHHHHHHHHHhcCChh
Q 004644 270 MIAAYVQRGQIEEAARLFIEMPERNPVSWTTMI---DGYVRIAKLDEARRLLDQMPYKNIA---AQTAMISGYVQNKRMD 343 (740)
Q Consensus 270 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~ 343 (740)
+...+...|++..|+..|...++-|+..|.++. ..|...|+...|+.-+.++++..+. +...-+..+.+.|.++
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHH
Confidence 444555555555555555555554444443332 2344555555555444444332221 2222334445555555
Q ss_pred HHHHHHhhcCCCCh------------------hhHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHccC
Q 004644 344 EANQIFDKIGTHDV------------------VCWNVMIKGYAQCGRMDEAINLFRQMVN---KDIVTWNTMIAGYAQIR 402 (740)
Q Consensus 344 ~A~~~~~~~~~~~~------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 402 (740)
+|..-|+.+...++ ......+..+...|+...|+....++++ .|...+..-..+|...|
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~ 203 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEG 203 (504)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcC
Confidence 55555544432221 0111222334444555555555555543 23344444455555555
Q ss_pred CHHHHHHHHHhhC--CCCCeecHHHHHHHHHcCCChHHHHHHHHHH
Q 004644 403 QMDDAVKIFEEMG--KRRNTVSWNALISGFLQNEFHLDALKIFVLM 446 (740)
Q Consensus 403 ~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 446 (740)
++..|+.-++... ...++.++..+-..+...|+.+.++...++.
T Consensus 204 e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iREC 249 (504)
T KOG0624|consen 204 EPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIREC 249 (504)
T ss_pred cHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5555554444441 1223333333444444444444444444443
No 98
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.88 E-value=8.3e-08 Score=91.03 Aligned_cols=180 Identities=13% Similarity=0.018 Sum_probs=112.4
Q ss_pred ChhHHHHHHHHhhccCCHHHHHHHhcccC---CCCc---chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH----H
Q 004644 489 DLFVGNSLITMYAKCGRIQNAELLFKDAD---PVDV---ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV----T 558 (740)
Q Consensus 489 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~ 558 (740)
....+..++..+.+.|++++|...|+++. |.+. .+|..++.++...|++++|+..|+++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 34455566666777777777777776554 2222 34566667777777777777777777663 33322 2
Q ss_pred HHHHHHhhccc--------chHHHHHHHHHHhhhhcCCcCCc-chHHHHhhhhhccCChHHHHHHHHhCCCCCCHHHHHH
Q 004644 559 FIGVLSACSHV--------GLVDGGLKLFECMTEVYAIEPLV-EHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGT 629 (740)
Q Consensus 559 ~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 629 (740)
+..+..++... |+.++|.+.|+.+.+. .|+. ..+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 33334444433 6667777777766653 3331 111111100 0000000 001124
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHccCCCCC---cchHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004644 630 LLGACRMHQNIKLGRIAVEKLSELEPQKT---SCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688 (740)
Q Consensus 630 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 688 (740)
+...+...|+++.|+..++++++..|+++ .++..++.+|...|++++|..+++.+..+.
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 55567788999999999999999988764 689999999999999999999999887543
No 99
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=3.6e-07 Score=87.62 Aligned_cols=153 Identities=13% Similarity=0.122 Sum_probs=90.8
Q ss_pred HHHHhhccCCHHHHHHHhcccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHH
Q 004644 496 LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGG 575 (740)
Q Consensus 496 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a 575 (740)
...++...|++++|++++++. .+.......+..|.+.++++.|.+.++.|.+ ...|.. ...+..++
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~~-l~qLa~aw--------- 173 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDSI-LTQLAEAW--------- 173 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCHH-HHHHHHHH---------
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHH-HHHHHHHH---------
Confidence 345677788888888888776 4555666677888888888888888888876 344433 22232222
Q ss_pred HHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHcc
Q 004644 576 LKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMK--IKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653 (740)
Q Consensus 576 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 653 (740)
+....-.+.+.+|.-+|+++. ..+++.+.+.+..+....|++++|+..++++++.
T Consensus 174 -----------------------v~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 174 -----------------------VNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK 230 (290)
T ss_dssp -----------------------HHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC
T ss_pred -----------------------HHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 222222234555555555552 2344455566665666666777777777777777
Q ss_pred CCCCCcchHHHHHHHHhcCCc-hHHHHHHHHHh
Q 004644 654 EPQKTSCYALLSNMHAEAGRW-DEVEKVRVSME 685 (740)
Q Consensus 654 ~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 685 (740)
+|+++.+..+++-+....|+. +.+.+.+..++
T Consensus 231 ~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 231 DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 777766666666666666666 44555555554
No 100
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.88 E-value=2.7e-06 Score=87.79 Aligned_cols=124 Identities=17% Similarity=0.210 Sum_probs=94.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhh
Q 004644 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV-TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLL 602 (740)
Q Consensus 525 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 602 (740)
.-+...|-..|++++|++..++.++. .|+.+ .|..-...+-+.|++++|.+.++.++. +.+. ...-+..+..+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~---LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARE---LDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---CChhhHHHHHHHHHHH
Confidence 55677788899999999999999985 67754 778888889999999999999999876 3333 44446677888
Q ss_pred hccCChHHHHHHHHhCC---CCC--CH----HHHHH--HHHHHHhcCCHHHHHHHHHHhHcc
Q 004644 603 SRAGRLDEAFEMVKGMK---IKP--NA----GIWGT--LLGACRMHQNIKLGRIAVEKLSEL 653 (740)
Q Consensus 603 ~~~g~~~~A~~~~~~~~---~~p--~~----~~~~~--l~~~~~~~g~~~~a~~~~~~~~~~ 653 (740)
.|+|++++|.+.+.... ..| |. .+|.- .+.+|.+.|++..|+.-+..+.+.
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999998876652 122 11 13543 345688999999999888877654
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.87 E-value=1.9e-06 Score=87.81 Aligned_cols=197 Identities=12% Similarity=-0.034 Sum_probs=116.8
Q ss_pred HHHHHHHHhhccCCHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCh--HHHHHHHHh
Q 004644 492 VGNSLITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGV-APDP--VTFIGVLSA 565 (740)
Q Consensus 492 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~--~~~~~ll~a 565 (740)
....+...+...|++++|.+.+++.. |.+...+..+..++...|++++|+..+++...... .|+. ..+..+...
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 33445556777777888877777654 55566677777788888888888888887776421 1222 133456666
Q ss_pred hcccchHHHHHHHHHHhhhhcCCcCCcchH-H--HHhhhhhccCChHHHHHH---HHhC-CCCCC---HHHHHHHHHHHH
Q 004644 566 CSHVGLVDGGLKLFECMTEVYAIEPLVEHY-A--CMIDLLSRAGRLDEAFEM---VKGM-KIKPN---AGIWGTLLGACR 635 (740)
Q Consensus 566 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~-~~~p~---~~~~~~l~~~~~ 635 (740)
+...|++++|+.+|+++.......+..... . .+...+...|....+.++ .... +..|+ .........++.
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 275 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALA 275 (355)
T ss_pred HHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHh
Confidence 777888888888888765321111111111 1 222233334433333222 1111 11111 112224455667
Q ss_pred hcCCHHHHHHHHHHhHccCCC---------CCcchHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004644 636 MHQNIKLGRIAVEKLSELEPQ---------KTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688 (740)
Q Consensus 636 ~~g~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 688 (740)
..|+.+.|...++.+....-. ........+.++...|++++|.+.+......+
T Consensus 276 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 276 GAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred cCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 788898888888877553211 34566788889999999999999988776543
No 102
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.79 E-value=3.2e-07 Score=87.99 Aligned_cols=235 Identities=13% Similarity=0.078 Sum_probs=137.1
Q ss_pred HHHHHccCChhHHHHHHhhccCCCc----cchHHHHHHHHcCCChhHHHHHHhhCCCCCcchHHHHHHHHhcCCChHHHH
Q 004644 22 ITQLGKSGRVEEAIKIFSQMSQKNT----VTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEAR 97 (740)
Q Consensus 22 ~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 97 (740)
++.+.-.|++..++.-.+ ..+.++ .....+.+++...|+++..+.-...-..|.......++..+...++-+.++
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHH
Confidence 667777888888887666 332222 234456778888888887766655555555555555655555545666676
Q ss_pred HHHHhccC-C----CcccHHHHHHHHHcCCChHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHhcCCCCCcc
Q 004644 98 ELFDKMFR-P----DLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV 172 (740)
Q Consensus 98 ~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 172 (740)
.-++..+. + +.......+.++...|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+-+..
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD 163 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQIDED 163 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 66655542 1 1222233345566678888888877764 45666677788888888888888888887643322
Q ss_pred -cHHHHHHH----HHhCCChHHHHHHHHhccc---CCcchHHHHHHHHhcCCChHHHHHHhcccC---CCchhHHHHHHH
Q 004644 173 -SWNSMLSG----YTKNGEMHLASKFFEAMEE---RDVVSWNLMLDGYVELDDLDSAWKFFQKIP---EQNVVSWVTMLS 241 (740)
Q Consensus 173 -~~~~l~~~----~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~ 241 (740)
+...+..+ +.-.+.+.+|.-+|+++.+ +++.+.+.++.+....|++++|..++.++. +.++.+...++.
T Consensus 164 ~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv 243 (290)
T PF04733_consen 164 SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIV 243 (290)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 22333332 2223457888888887764 333444555556666666666666666554 444455555555
Q ss_pred HHHhcCCh-HHHHHHhccCC
Q 004644 242 GYARNGRM-LEARRLFDQMP 260 (740)
Q Consensus 242 ~~~~~g~~-~~A~~~~~~~~ 260 (740)
+....|+. +.+.+.+.++.
T Consensus 244 ~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 244 CSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHhCCChhHHHHHHHHHH
Confidence 55555555 44444554443
No 103
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.78 E-value=3.3e-06 Score=87.23 Aligned_cols=280 Identities=14% Similarity=0.115 Sum_probs=178.8
Q ss_pred HHHHhcCChhHHHHHHhhcCC---CChhhHHHHHHHHHHcCCHHHHHHHHHhccc--CCHHHHHHHHHHHH------ccC
Q 004644 334 SGYVQNKRMDEANQIFDKIGT---HDVVCWNVMIKGYAQCGRMDEAINLFRQMVN--KDIVTWNTMIAGYA------QIR 402 (740)
Q Consensus 334 ~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~------~~~ 402 (740)
..+...|++++|++.++.... .........+..+.+.|+.++|..+|+.+++ |+...|...+..+. ...
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccc
Confidence 344555666666666654322 2334556677888889999999999999876 44444444333332 122
Q ss_pred CHHHHHHHHHhhC-CCCCeecHHHHHHHHHcCCChH-HHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHH
Q 004644 403 QMDDAVKIFEEMG-KRRNTVSWNALISGFLQNEFHL-DALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHL 480 (740)
Q Consensus 403 ~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~-~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~ 480 (740)
+.+....+|+++. .-|.......+.-.+.....+. .+..++..+...|+++--..+. ..+...........+...
T Consensus 92 ~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk---~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 92 DVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLK---PLYKDPEKAAIIESLVEE 168 (517)
T ss_pred cHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHH---HHHcChhHHHHHHHHHHH
Confidence 4677778888772 2233333333333333333333 3455667777888665444433 334444444444444443
Q ss_pred HHHh----C----------CCCCh--hHHHHHHHHhhccCCHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHH
Q 004644 481 AIKS----G----------YVNDL--FVGNSLITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAI 541 (740)
Q Consensus 481 ~~~~----g----------~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 541 (740)
.... + -+|+. +++.-+...|-..|++++|++++++.. |..+..|..-+..+-..|++.+|.
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 3321 1 12333 455667888999999999999999776 455677888999999999999999
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchH--------HHHhhhhhccCChHHHHH
Q 004644 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHY--------ACMIDLLSRAGRLDEAFE 613 (740)
Q Consensus 542 ~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~--------~~l~~~~~~~g~~~~A~~ 613 (740)
+.++..+... .-|...-+-....+.+.|++++|.+.+....+. +..|....+ ...+.+|.|.|++..|++
T Consensus 249 ~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 249 EAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTRE-DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC-CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999853 334445555666778999999999999887664 334432221 234678999999999987
Q ss_pred HHHhC
Q 004644 614 MVKGM 618 (740)
Q Consensus 614 ~~~~~ 618 (740)
.+...
T Consensus 327 ~~~~v 331 (517)
T PF12569_consen 327 RFHAV 331 (517)
T ss_pred HHHHH
Confidence 76554
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=8.5e-07 Score=87.91 Aligned_cols=213 Identities=20% Similarity=0.204 Sum_probs=100.4
Q ss_pred HHHcCCHHHHHHHHHhcccCCH---HHHHHHHHHHHccCCHHHHHHHHHhh--CCCCCeecHHHHHHHHHcCCChHHHHH
Q 004644 367 YAQCGRMDEAINLFRQMVNKDI---VTWNTMIAGYAQIRQMDDAVKIFEEM--GKRRNTVSWNALISGFLQNEFHLDALK 441 (740)
Q Consensus 367 ~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~ 441 (740)
+.+.|++.+|.-.|+..++.|| ..|.-|+......++-..|+..+++. ..+.|......|.-.|...|.-..|+.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 4455555555555555554332 34555555555555555555555444 222344444555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHH-H-------HHhhhhhhhHHHHHH-HHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHH
Q 004644 442 IFVLMTQEGKKADHSTLACA-L-------SACAHLAALQLGRQI-HHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELL 512 (740)
Q Consensus 442 ~~~~m~~~~~~p~~~~~~~~-l-------~~~~~~~~~~~a~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~ 512 (740)
.++..+.... ........ . ........+....++ ++.+...+...|+.+...|.-.|--.|+++.|...
T Consensus 375 ~L~~Wi~~~p--~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKP--KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCc--cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 5555433210 00000000 0 011111112222222 22333334345555555555555555666666666
Q ss_pred hcccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHhhcccchHHHHHHHHHHhh
Q 004644 513 FKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV-TFIGVLSACSHVGLVDGGLKLFECMT 583 (740)
Q Consensus 513 ~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~ 583 (740)
|+... |.|...||-|+..++...+..+|+..|++.++ ++|+-+ ....|.-+|...|.+++|..+|-.++
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 65433 44555566666666655566666666666555 455533 33334445555555555555555444
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.77 E-value=2.3e-07 Score=83.93 Aligned_cols=147 Identities=11% Similarity=0.148 Sum_probs=112.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccC
Q 004644 528 IAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAG 606 (740)
Q Consensus 528 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 606 (740)
+..|...|+++.+....+++.. |. ..+...++.+++...++...+ ..|+ .+.|..++..|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCC
Confidence 3467778887776544433221 21 012235667777777777765 4566 888999999999999
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHH
Q 004644 607 RLDEAFEMVKGM-KIKP-NAGIWGTLLGAC-RMHQN--IKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVR 681 (740)
Q Consensus 607 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 681 (740)
++++|...+++. ...| +...+..+..++ ...|+ .++|...++++++++|+++.++..||..+...|++++|...+
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999998765 4566 555777777764 56676 599999999999999999999999999999999999999999
Q ss_pred HHHhhCCC
Q 004644 682 VSMEGSGA 689 (740)
Q Consensus 682 ~~~~~~~~ 689 (740)
+++.+...
T Consensus 168 ~~aL~l~~ 175 (198)
T PRK10370 168 QKVLDLNS 175 (198)
T ss_pred HHHHhhCC
Confidence 99976554
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.74 E-value=9.5e-08 Score=81.59 Aligned_cols=121 Identities=11% Similarity=0.052 Sum_probs=83.7
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC-C
Q 004644 542 KLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-K 619 (740)
Q Consensus 542 ~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 619 (740)
.+|++.++ +.|+. +.....++...|++++|...|+.+.. +.|+ ...|..++.++.+.|++++|...++.. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45555555 34554 33445566677777777777777654 4554 666777777777778888887777654 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHH
Q 004644 620 IKP-NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHA 669 (740)
Q Consensus 620 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 669 (740)
..| +...|..+..++...|+.++|+..+++++++.|+++..+...+++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 444 55567777777778888888888888888888888888777776644
No 107
>PLN02789 farnesyltranstransferase
Probab=98.72 E-value=1.8e-06 Score=83.95 Aligned_cols=168 Identities=11% Similarity=0.103 Sum_probs=120.5
Q ss_pred HhhccC-CHHHHHHHhcccC---CCCcchHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCC-ChHHHHHHHHhhcccch
Q 004644 499 MYAKCG-RIQNAELLFKDAD---PVDVISWNSLIAGYAINGNA--TEAIKLFEEMVMEGVAP-DPVTFIGVLSACSHVGL 571 (740)
Q Consensus 499 ~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~m~~~~~~p-~~~~~~~ll~a~~~~g~ 571 (740)
++.+.| ++++++..++++. |++..+|+.....+.+.|+. ++++++++++++. .| |..+|.....++.+.|+
T Consensus 80 iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~ 157 (320)
T PLN02789 80 CLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGG 157 (320)
T ss_pred HHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhh
Confidence 334445 4677777777654 66667788777677666763 6778888888874 45 44578877778888888
Q ss_pred HHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhcc---CCh----HHHHHHH-HhCCCCC-CHHHHHHHHHHHHhc----
Q 004644 572 VDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRA---GRL----DEAFEMV-KGMKIKP-NAGIWGTLLGACRMH---- 637 (740)
Q Consensus 572 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~---g~~----~~A~~~~-~~~~~~p-~~~~~~~l~~~~~~~---- 637 (740)
++++++.++++++. .|+ ...|+....++.+. |.+ ++++++. +.+...| |...|+.+.+.+...
T Consensus 158 ~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l 234 (320)
T PLN02789 158 WEDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEAL 234 (320)
T ss_pred HHHHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccc
Confidence 99999999988763 444 55666665555444 323 4567776 4455566 556899998888763
Q ss_pred CCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhc
Q 004644 638 QNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEA 671 (740)
Q Consensus 638 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 671 (740)
++..++...+.++++.+|.++.++..|+.+|...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 235 VSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred ccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 3456688999999999999999999999999864
No 108
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.71 E-value=2e-07 Score=77.52 Aligned_cols=100 Identities=7% Similarity=-0.020 Sum_probs=87.9
Q ss_pred CCc-CC-cchHHHHhhhhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchH
Q 004644 587 AIE-PL-VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKP-NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYA 662 (740)
Q Consensus 587 ~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 662 (740)
++. ++ .+..-.+...+...|++++|..+|+-+ ...| +..-|..|..+|...|+++.|+..|.++..++|++|.++.
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 455 44 566667888889999999999999887 3566 5557999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhh
Q 004644 663 LLSNMHAEAGRWDEVEKVRVSMEG 686 (740)
Q Consensus 663 ~l~~~~~~~g~~~~a~~~~~~~~~ 686 (740)
++|.+|...|+.++|.+-|+....
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999997763
No 109
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.68 E-value=9.7e-05 Score=85.74 Aligned_cols=194 Identities=12% Similarity=0.039 Sum_probs=90.7
Q ss_pred HHHHHHhhccCCHHHHHHHhcccCC-------C----CcchHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC--hHH
Q 004644 494 NSLITMYAKCGRIQNAELLFKDADP-------V----DVISWNSLIAGYAINGNATEAIKLFEEMVME--GVAPD--PVT 558 (740)
Q Consensus 494 ~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~--~~~ 558 (740)
..+...+...|+++.|...+++... + ....+..+...+...|++++|...+++.... ...|. ...
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 3444555556666666555543220 0 0112333444455556666666666655442 11111 112
Q ss_pred HHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchH-----HHHhhhhhccCChHHHHHHHHhCCCC--CCHH----HH
Q 004644 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHY-----ACMIDLLSRAGRLDEAFEMVKGMKIK--PNAG----IW 627 (740)
Q Consensus 559 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~~----~~ 627 (740)
+..+.......|+.++|...+..+............+ ......+...|+.+.|.+++...... .... .+
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 2333344555666666666666654321111100000 00112334456666666665443210 0110 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHccCCC------CCcchHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004644 628 GTLLGACRMHQNIKLGRIAVEKLSELEPQ------KTSCYALLSNMHAEAGRWDEVEKVRVSMEGS 687 (740)
Q Consensus 628 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 687 (740)
..+..++...|+.+.|...++++++.... ....+..++.+|...|+.++|...+.+..+.
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444455566666666666666554211 1234556666666667666666666655543
No 110
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.67 E-value=0.00045 Score=68.47 Aligned_cols=174 Identities=15% Similarity=0.073 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCC-ChhHHHHHHHHhhccCCHHHHHHHhc
Q 004644 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN-DLFVGNSLITMYAKCGRIQNAELLFK 514 (740)
Q Consensus 436 ~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 514 (740)
.+.....+.++...-..--..+|...+....+...+..|+.+|..+.+.+..+ ++++.++++..|+ .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 34444555554443222223345566666667777777777777777776655 6777777777655 456677777776
Q ss_pred ccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHhhcccchHHHHHHHHHHhhhhcC--
Q 004644 515 DAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP--VTFIGVLSACSHVGLVDGGLKLFECMTEVYA-- 587 (740)
Q Consensus 515 ~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-- 587 (740)
-.. +.++.--+..+.-+...++-..|..+|++.+..++.|+. ..|...|.--+.-|+....+++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 543 233333445566666677777777777777776555554 3677777766777777777777777666554
Q ss_pred CcCCcchHHHHhhhhhccCChHH
Q 004644 588 IEPLVEHYACMIDLLSRAGRLDE 610 (740)
Q Consensus 588 ~~p~~~~~~~l~~~~~~~g~~~~ 610 (740)
..|...+-..+++.|.-.+....
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred hcCCCChHHHHHHHHhhcccccc
Confidence 44444444555666655555443
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.62 E-value=3.4e-07 Score=78.22 Aligned_cols=108 Identities=8% Similarity=-0.065 Sum_probs=91.6
Q ss_pred HHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccC
Q 004644 577 KLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM-KIKP-NAGIWGTLLGACRMHQNIKLGRIAVEKLSELE 654 (740)
Q Consensus 577 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 654 (740)
.+|++..+ +.|+ ++..++..+...|++++|.+.++.. ...| +...|..+..+|...|+++.|+..++++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34555443 4555 3566788899999999999999775 4555 66689999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004644 655 PQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689 (740)
Q Consensus 655 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 689 (740)
|+++..+..+|.++...|++++|...++...+..+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999998875443
No 112
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.60 E-value=3.7e-05 Score=78.32 Aligned_cols=184 Identities=13% Similarity=0.137 Sum_probs=120.9
Q ss_pred cCCHHHHHHHhcccCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHhhcccchHHHHHHH
Q 004644 503 CGRIQNAELLFKDADPVD---VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD-PVTFIGVLSACSHVGLVDGGLKL 578 (740)
Q Consensus 503 ~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~a~~~~g~~~~a~~~ 578 (740)
.|..+.+.+.+....+.+ ......+...+...|++++|...+++..+. .|+ ...+..+..++...|++++|+.+
T Consensus 93 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g~~~eA~~~ 170 (355)
T cd05804 93 SGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQGRFKEGIAF 170 (355)
T ss_pred ccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 455556666665433333 334455667889999999999999999985 454 45677788889999999999999
Q ss_pred HHHhhhhcCCcCCc--chHHHHhhhhhccCChHHHHHHHHhCC-CCC--CHHHH--H--HHHHHHHhcCCHHHHHHH---
Q 004644 579 FECMTEVYAIEPLV--EHYACMIDLLSRAGRLDEAFEMVKGMK-IKP--NAGIW--G--TLLGACRMHQNIKLGRIA--- 646 (740)
Q Consensus 579 ~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p--~~~~~--~--~l~~~~~~~g~~~~a~~~--- 646 (740)
++.........|.. ..|..++..+...|++++|..+++... ..| ..... + .++.-+...|....+.+.
T Consensus 171 l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~ 250 (355)
T cd05804 171 MESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDL 250 (355)
T ss_pred HHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHH
Confidence 99987643222332 235578899999999999999998852 223 22211 1 333344555654444433
Q ss_pred HHHhHccCCCC--CcchHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004644 647 VEKLSELEPQK--TSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688 (740)
Q Consensus 647 ~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 688 (740)
........|.. +..-...+.++...|++++|.+.++.+....
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 251 ADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 22221111221 1222366778889999999999999886543
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.56 E-value=3.4e-06 Score=90.61 Aligned_cols=133 Identities=9% Similarity=0.025 Sum_probs=70.1
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHH
Q 004644 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV-TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYA 596 (740)
Q Consensus 519 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 596 (740)
.++..+-.|.....+.|++++|..+++...+ ..|+.. ....+..++.+.+++++|...+++..+ ..|+ ..+..
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 3344555555555555555555555555555 345443 444455555555555555555555543 3444 44455
Q ss_pred HHhhhhhccCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCC
Q 004644 597 CMIDLLSRAGRLDEAFEMVKGMK-IKPN-AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQ 656 (740)
Q Consensus 597 ~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 656 (740)
.++.++.+.|++++|.++|+++- ..|+ ...|.++..++...|+.+.|..+|+++++...+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 55555555555555555555442 2232 334555555555555555555555555555443
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.54 E-value=3.2e-06 Score=86.25 Aligned_cols=189 Identities=14% Similarity=0.169 Sum_probs=108.2
Q ss_pred hHHHHHHHHhhccCCHHHHHHHhcccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhccc-
Q 004644 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV- 569 (740)
Q Consensus 491 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~- 569 (740)
..-..+...+.++|-...|..+|++.. .|.-.+.+|...|+..+|..+..+-.+ -+|++..|..+++.....
T Consensus 399 q~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChH
Confidence 333444555555555555555555432 344455555555555555555555444 245555555554444433
Q ss_pred ---------------------------chHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC-CC
Q 004644 570 ---------------------------GLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-KI 620 (740)
Q Consensus 570 ---------------------------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 620 (740)
+++.++.+.|+.-.+ ++|- ..+|-.++-+..+.++++.|.+.|... ..
T Consensus 472 ~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL 548 (777)
T KOG1128|consen 472 LYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL 548 (777)
T ss_pred HHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc
Confidence 455555555544432 3443 455666666666666666666655443 45
Q ss_pred CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004644 621 KPNAG-IWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689 (740)
Q Consensus 621 ~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 689 (740)
.||.. .|+++..+|.+.|+-.+|...+.++++.+-++...|.+...+..+.|.|++|.+.+..+.+...
T Consensus 549 ~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 549 EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 56444 5777777777777777777777777776666666666666666677777777777666655443
No 115
>PLN02789 farnesyltranstransferase
Probab=98.53 E-value=5.5e-06 Score=80.64 Aligned_cols=185 Identities=13% Similarity=0.125 Sum_probs=139.4
Q ss_pred HHhhccCCHHHHHHHhcccC---CCCcchHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCh-HHHHHHHHhhcccch-
Q 004644 498 TMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAING-NATEAIKLFEEMVMEGVAPDP-VTFIGVLSACSHVGL- 571 (740)
Q Consensus 498 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~a~~~~g~- 571 (740)
..+.+.++.++|+....++. |.+..+|+....++...| +++++++.++++.+. .|+. .+|......+.+.|.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCch
Confidence 34455678888888888765 566678888888888888 579999999999985 4443 456655444555565
Q ss_pred -HHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCH----
Q 004644 572 -VDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKP-NAGIWGTLLGACRMH---QNI---- 640 (740)
Q Consensus 572 -~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~---- 640 (740)
.+++..+++.+.+ +.|. ...|+....++.+.|++++|++.++++ ...| |...|+.....+... |..
T Consensus 123 ~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 123 AANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 3678888888875 5666 778888899999999999999999886 3444 667888887766544 222
Q ss_pred HHHHHHHHHhHccCCCCCcchHHHHHHHHh----cCCchHHHHHHHHHhhC
Q 004644 641 KLGRIAVEKLSELEPQKTSCYALLSNMHAE----AGRWDEVEKVRVSMEGS 687 (740)
Q Consensus 641 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 687 (740)
+.++....++++++|+|..+|..++.++.. .++..+|.+........
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~ 250 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK 250 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc
Confidence 467778889999999999999999999988 35567788877766543
No 116
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.49 E-value=0.00029 Score=81.83 Aligned_cols=349 Identities=11% Similarity=-0.021 Sum_probs=191.6
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCCCcch--HHHHHHHHHHcCCHHHHHHHHhhCCC----CChhhHHHHHHHHhhhCC
Q 004644 237 VTMLSGYARNGRMLEARRLFDQMPIRNVVA--WNAMIAAYVQRGQIEEAARLFIEMPE----RNPVSWTTMIDGYVRIAK 310 (740)
Q Consensus 237 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~ 310 (740)
......+...|++.+|..........+... ...........|+++.+...+..+.. .++.........+...|+
T Consensus 345 ~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~ 424 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHR 424 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCC
Confidence 334455666777777766665554332111 11122334456777777777666531 223333334444556677
Q ss_pred HHHHHHHHhhCCC----Cc---h-----hHHHHHHHHHHhcCChhHHHHHHhhcCC----CCh----hhHHHHHHHHHHc
Q 004644 311 LDEARRLLDQMPY----KN---I-----AAQTAMISGYVQNKRMDEANQIFDKIGT----HDV----VCWNVMIKGYAQC 370 (740)
Q Consensus 311 ~~~a~~~~~~~~~----~~---~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~----~~~~~l~~~~~~~ 370 (740)
++++...+..... .+ . .....+...+...|++++|...++.... .+. ...+.+...+...
T Consensus 425 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 504 (903)
T PRK04841 425 YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK 504 (903)
T ss_pred HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc
Confidence 7777776655421 11 0 1112234455677888888777766321 121 2345556667778
Q ss_pred CCHHHHHHHHHhccc-------CC--HHHHHHHHHHHHccCCHHHHHHHHHhhCC------CCC----eecHHHHHHHHH
Q 004644 371 GRMDEAINLFRQMVN-------KD--IVTWNTMIAGYAQIRQMDDAVKIFEEMGK------RRN----TVSWNALISGFL 431 (740)
Q Consensus 371 g~~~~A~~~~~~~~~-------~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~----~~~~~~li~~~~ 431 (740)
|++++|...++++.. +. ..+...+...+...|+++.|...+++... .++ ...+..+...+.
T Consensus 505 G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 584 (903)
T PRK04841 505 GELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW 584 (903)
T ss_pred CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 888888888877753 11 23445566677788888888877766510 111 122334455566
Q ss_pred cCCChHHHHHHHHHHHHCC--CCCC--HHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCC--Chh----HHHHHHHHhh
Q 004644 432 QNEFHLDALKIFVLMTQEG--KKAD--HSTLACALSACAHLAALQLGRQIHHLAIKSGYVN--DLF----VGNSLITMYA 501 (740)
Q Consensus 432 ~~~~~~~A~~~~~~m~~~~--~~p~--~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~----~~~~l~~~~~ 501 (740)
..|++++|...+.+..... ..+. ...+..+.......|+.+.|...+..+....-.. ... .....+..+.
T Consensus 585 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (903)
T PRK04841 585 EWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQ 664 (903)
T ss_pred HhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHH
Confidence 7788888888877764421 1122 1222223344556677777777766654421111 000 0011123344
Q ss_pred ccCCHHHHHHHhcccCCCCc-c------hHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCh-HHHHHHHHhhccc
Q 004644 502 KCGRIQNAELLFKDADPVDV-I------SWNSLIAGYAINGNATEAIKLFEEMVME----GVAPDP-VTFIGVLSACSHV 569 (740)
Q Consensus 502 ~~g~~~~A~~~~~~~~~~~~-~------~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~ll~a~~~~ 569 (740)
..|+.+.|...+.....+.. . .+..+..++...|++++|...+++.... |..++. .+...+..++...
T Consensus 665 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~ 744 (903)
T PRK04841 665 MTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQ 744 (903)
T ss_pred HCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHc
Confidence 57778888777765543211 1 1334566677778888888888776653 222222 2455555667777
Q ss_pred chHHHHHHHHHHhhhh
Q 004644 570 GLVDGGLKLFECMTEV 585 (740)
Q Consensus 570 g~~~~a~~~~~~~~~~ 585 (740)
|+.++|...+.++.+.
T Consensus 745 G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 745 GRKSEAQRVLLEALKL 760 (903)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8888888888777764
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.47 E-value=7.4e-06 Score=77.66 Aligned_cols=182 Identities=12% Similarity=-0.005 Sum_probs=126.7
Q ss_pred CHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCC--ChhHHHHHHHHhhccCCHHHHHHHhcccC---CCCcc---hHH
Q 004644 454 DHSTLACALSACAHLAALQLGRQIHHLAIKSGYVN--DLFVGNSLITMYAKCGRIQNAELLFKDAD---PVDVI---SWN 525 (740)
Q Consensus 454 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~---~~~ 525 (740)
....+......+...|+++.|...+..+.+..... ....+..+...|.+.|++++|...+++.. |.+.. ++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 44566667777889999999999999988764321 12466788899999999999999999875 33343 466
Q ss_pred HHHHHHHhc--------CChHHHHHHHHHHHHCCCCCChH-HHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHH
Q 004644 526 SLIAGYAIN--------GNATEAIKLFEEMVMEGVAPDPV-TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYA 596 (740)
Q Consensus 526 ~l~~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 596 (740)
.+..++... |++++|++.|+++... .|+.. ....+... +.... .. .....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~~-------~~--------~~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLRN-------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHHH-------HH--------HHHHH
Confidence 677777665 7899999999999884 56653 22211111 00000 00 01123
Q ss_pred HHhhhhhccCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCC
Q 004644 597 CMIDLLSRAGRLDEAFEMVKGM----KIKP-NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQ 656 (740)
Q Consensus 597 ~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 656 (740)
.+++.+.+.|++++|...++.. +..| ....|..+..++...|++++|...++.+....|+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5677788999999998887665 3233 3457888888999999999999988887766654
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.46 E-value=3.1e-06 Score=75.84 Aligned_cols=153 Identities=13% Similarity=0.134 Sum_probs=97.0
Q ss_pred CccchHHHHHHHHcCCChhHHHHHHhhCCC-CCc--chHHHHHHHHhcCCChHHHHHHHHhccC---CCcccHHHHHHHH
Q 004644 45 NTVTYNSMISAYAKNGRVNDARKLFEQMPQ-RNL--VSWNSMIAGYLHNDKVKEARELFDKMFR---PDLFSWALMITCY 118 (740)
Q Consensus 45 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 118 (740)
+..+ ..+...+...|+-+.+..+..+... ... ......+...++.|++..|+..++++.. +|...|+.+.-+|
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaal 144 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAAL 144 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHH
Confidence 4444 5566666666776666666665432 222 2334466777777777777777777644 4556677777777
Q ss_pred HcCCChHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCChhhHHHHHhcCC---CCCcccHHHHHHHHHhCCChHHHHHH
Q 004644 119 TRKGELEKARELFDLL--PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMP---SKNIVSWNSMLSGYTKNGEMHLASKF 193 (740)
Q Consensus 119 ~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~ 193 (740)
.+.|+++.|..-|.+. ..+.++...+.|+-.|.-.|+++.|..++.... ..|...-..+..+....|++++|..+
T Consensus 145 dq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 145 DQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 7777777777777666 345566667777777777777777777776543 23555566666666777777777666
Q ss_pred HHhcc
Q 004644 194 FEAME 198 (740)
Q Consensus 194 ~~~~~ 198 (740)
-..-.
T Consensus 225 ~~~e~ 229 (257)
T COG5010 225 AVQEL 229 (257)
T ss_pred ccccc
Confidence 54433
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.46 E-value=8.8e-06 Score=73.64 Aligned_cols=154 Identities=11% Similarity=0.108 Sum_probs=111.0
Q ss_pred HHHhhccCCHHHHHHHhcccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHH
Q 004644 497 ITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGL 576 (740)
Q Consensus 497 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~ 576 (740)
+-.|.+.|+++....-.+....+. . .+...++.++++..+++.++.+ +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345677777766544433222111 0 1112566778888888877752 445567888888888999999999
Q ss_pred HHHHHhhhhcCCcCC-cchHHHHhhhh-hccCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004644 577 KLFECMTEVYAIEPL-VEHYACMIDLL-SRAGR--LDEAFEMVKGM-KIKP-NAGIWGTLLGACRMHQNIKLGRIAVEKL 650 (740)
Q Consensus 577 ~~~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 650 (740)
..|++..+ +.|+ ...+..++.++ .+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998875 5666 77788888864 67777 58999998775 4566 5557888888899999999999999999
Q ss_pred HccCCCCCcchH
Q 004644 651 SELEPQKTSCYA 662 (740)
Q Consensus 651 ~~~~p~~~~~~~ 662 (740)
+++.|.+..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 999988775443
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=5.7e-06 Score=84.48 Aligned_cols=217 Identities=18% Similarity=0.096 Sum_probs=174.3
Q ss_pred ecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHh
Q 004644 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500 (740)
Q Consensus 421 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 500 (740)
..-..+...+...|-...|+.+|+++ ..+..++.+|...|....|..+...-.+ -+|++..|..+++..
T Consensus 399 q~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 33455778888999999999999875 3577788889999999999888877776 478999999999999
Q ss_pred hccCCHHHHHHHhcccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHhhcccchHHHHHHHH
Q 004644 501 AKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP-DPVTFIGVLSACSHVGLVDGGLKLF 579 (740)
Q Consensus 501 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~ 579 (740)
....-+++|.++++....+-- ..+.....+.++++++.+.|+.-.+. .| -..+|-.+..+..+.+++..|...|
T Consensus 468 ~d~s~yEkawElsn~~sarA~---r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISARAQ---RSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred cChHHHHHHHHHhhhhhHHHH---HhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 888889999999987654311 12222234479999999999988773 44 3458888888889999999999999
Q ss_pred HHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCC
Q 004644 580 ECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-KIK-PNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQ 656 (740)
Q Consensus 580 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 656 (740)
..... ..|+ .+.|+.+..+|.+.|+..+|...+++. +.. .+..+|-..+.....-|..+.|++++.+++.+.-+
T Consensus 543 ~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 543 HRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHhh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 98874 7888 899999999999999999999988665 433 34447888877888999999999999999876543
No 121
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.45 E-value=6.9e-06 Score=89.60 Aligned_cols=200 Identities=15% Similarity=0.144 Sum_probs=163.0
Q ss_pred CCChhHHHHHHHHhhccCCHHHHHHHhcccCC--------CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH
Q 004644 487 VNDLFVGNSLITMYAKCGRIQNAELLFKDADP--------VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558 (740)
Q Consensus 487 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 558 (740)
+.+...|-..+......+++++|++++++..+ .-...|.++++.....|.-+...++|+++.+. --.-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 44566777778888889999999999887652 22357889988888889888999999999873 333456
Q ss_pred HHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHh-CCCCCC---HHHHHHHHHHH
Q 004644 559 FIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKG-MKIKPN---AGIWGTLLGAC 634 (740)
Q Consensus 559 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~---~~~~~~l~~~~ 634 (740)
|..|+..|...+..++|.++++.|.++|+ .....|..+++.+.+...-++|.++++. |..-|. .....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999877 4467899999999999999999988854 444443 22333344445
Q ss_pred HhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 004644 635 RMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQ 690 (740)
Q Consensus 635 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 690 (740)
.++||.++++.+++..+.-+|.....|..+.+.-.+.|..+.+..+|+++.+.++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 68999999999999999999999999999999999999999999999999877654
No 122
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.44 E-value=1.4e-06 Score=74.30 Aligned_cols=101 Identities=19% Similarity=0.228 Sum_probs=82.5
Q ss_pred CcCC-cchHHHHhhhhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHH
Q 004644 588 IEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKP-NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALL 664 (740)
Q Consensus 588 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 664 (740)
..|+ ......++..+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 4554 455667778888888999998888775 3344 556788888888888999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHhhCC
Q 004644 665 SNMHAEAGRWDEVEKVRVSMEGSG 688 (740)
Q Consensus 665 ~~~~~~~g~~~~a~~~~~~~~~~~ 688 (740)
+.+|...|++++|...++...+..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhc
Confidence 999999999999999998776543
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.39 E-value=6.9e-05 Score=73.46 Aligned_cols=116 Identities=22% Similarity=0.176 Sum_probs=66.0
Q ss_pred hcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 004644 566 CSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPN-AGIWGTLLGACRMHQNIKL 642 (740)
Q Consensus 566 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 642 (740)
....|..++|+..++.+... .|+ +..+...++.+.+.|+.++|.+.++++ ...|+ ...+.++..++...|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 34456666666666665543 333 334445556666666666666666544 34454 3345556666666666666
Q ss_pred HHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHH
Q 004644 643 GRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSM 684 (740)
Q Consensus 643 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 684 (740)
|+..+...+.-+|++|..|..|+..|...|+..+|..-+.++
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 666666666666666666666666666555555554444333
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.38 E-value=9.2e-06 Score=72.88 Aligned_cols=177 Identities=14% Similarity=0.109 Sum_probs=127.9
Q ss_pred HHHHHHhhccCCHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccc
Q 004644 494 NSLITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570 (740)
Q Consensus 494 ~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g 570 (740)
..+...+.-.|+-+....+..+.. +.|....+..+....+.|++.+|+..|++..... +||..+++.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 445556666777777777776643 5555666778888899999999999999988753 566778999999999999
Q ss_pred hHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004644 571 LVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIK-P-NAGIWGTLLGACRMHQNIKLGRIAVE 648 (740)
Q Consensus 571 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 648 (740)
+.++|+.-|.+..+.++-+ +..++.|.-.|.-.|+++.|..++...... + |..+-..|..+....|+++.|+.+..
T Consensus 149 r~~~Ar~ay~qAl~L~~~~--p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPNE--PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccCC--chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 9999999999988743333 456788888888899999999988765322 3 66777888878888999999888766
Q ss_pred HhHccCCCCC-cchHHHHHHHHhcCCch
Q 004644 649 KLSELEPQKT-SCYALLSNMHAEAGRWD 675 (740)
Q Consensus 649 ~~~~~~p~~~-~~~~~l~~~~~~~g~~~ 675 (740)
+-+.. +.+ .....|..+....|-|.
T Consensus 227 ~e~~~--~~~~~~~~~l~~~~~~~~~~~ 252 (257)
T COG5010 227 QELLS--EQAANNVAALRAAASQSGAWT 252 (257)
T ss_pred ccccc--hhHhhHHHHHHHhhcccchhH
Confidence 54332 221 22334455555555543
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=6.2e-05 Score=73.78 Aligned_cols=149 Identities=14% Similarity=0.102 Sum_probs=120.6
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHH-HHHHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHH
Q 004644 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTF-IGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYA 596 (740)
Q Consensus 519 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 596 (740)
.....+....-.+...|.+++|+..++.++.. .||...| ......+...|+.++|.+.++.+.. ..|+ ....-
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~ 378 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQL 378 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHH
Confidence 44455666666777889999999999999985 6766654 4556678899999999999999986 4666 55667
Q ss_pred HHhhhhhccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCc
Q 004644 597 CMIDLLSRAGRLDEAFEMVKGMK--IKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRW 674 (740)
Q Consensus 597 ~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 674 (740)
.+..+|.+.|++.+|+..++... .+.|+..|..|..+|...|+..++..+ .+..|+-.|+|
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~ 441 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRL 441 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCH
Confidence 88999999999999999997763 344777999999999999998877655 46678899999
Q ss_pred hHHHHHHHHHhhCCC
Q 004644 675 DEVEKVRVSMEGSGA 689 (740)
Q Consensus 675 ~~a~~~~~~~~~~~~ 689 (740)
++|.......+++.-
T Consensus 442 ~~A~~~l~~A~~~~~ 456 (484)
T COG4783 442 EQAIIFLMRASQQVK 456 (484)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999988876653
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.36 E-value=2.5e-05 Score=84.17 Aligned_cols=141 Identities=13% Similarity=0.117 Sum_probs=105.4
Q ss_pred CCCChhHHHHHHHHhhccCCHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHH
Q 004644 486 YVNDLFVGNSLITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV-TFIG 561 (740)
Q Consensus 486 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ 561 (740)
...+...+-.|.......|..++|..+++.+. |.+...+..++.++.+.+++++|+..+++... ..|+.. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 34557777778888888888888888888665 56667778888888888888888888888887 467665 4455
Q ss_pred HHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC--CCCCCHHHHHHHH
Q 004644 562 VLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM--KIKPNAGIWGTLL 631 (740)
Q Consensus 562 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 631 (740)
+..++...|++++|..+|+++.. -.|+ ...+..++.++.+.|+.++|...|++. ...|....++.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 56677788888888888888876 2344 667788888888888888888888765 2344444444443
No 127
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.33 E-value=7.5e-05 Score=81.89 Aligned_cols=202 Identities=13% Similarity=0.131 Sum_probs=157.1
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHhccc--------CCHHHHHHHHHHHHccCCHHHHHHHHHhhCCCCC-eecHH
Q 004644 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQMVN--------KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRN-TVSWN 424 (740)
Q Consensus 354 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 424 (740)
|.....|-..+.-..+.++.++|.+++++++. .-...|.++++.-..-|.-+...++|+++-.--| ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 45667788888888889999999999998864 2245788888877777888888889988843333 44577
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCC-CChhHHHHHHHHhhcc
Q 004644 425 ALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYV-NDLFVGNSLITMYAKC 503 (740)
Q Consensus 425 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~ 503 (740)
.|...|.+.+..++|.++|+.|.+.= .-....|...+....+...-+.|+.++..+.+.-.. ..+.+..-.+.+-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 88888999999999999999987652 245556777777777777878888888887765221 2344555567777899
Q ss_pred CCHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 004644 504 GRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556 (740)
Q Consensus 504 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 556 (740)
|+.+.++.+|+... |+-...|+..+..-.++|+.+.+..+|++.+..++.|-.
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 99999999998765 677889999999999999999999999999998877754
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=1.6e-05 Score=70.59 Aligned_cols=182 Identities=12% Similarity=0.118 Sum_probs=132.8
Q ss_pred cCCHHHHHHHhcccC--------CCCc-chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHH-HHhhcccchH
Q 004644 503 CGRIQNAELLFKDAD--------PVDV-ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV-LSACSHVGLV 572 (740)
Q Consensus 503 ~g~~~~A~~~~~~~~--------~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-l~a~~~~g~~ 572 (740)
..+.++..+++.++. .++. ..+..++-+....|+.+.|...++++... + |.+.-...+ ..-+-..|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 457888888887654 1222 22344455566778999999999998875 3 554322221 1224567899
Q ss_pred HHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004644 573 DGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM--KIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649 (740)
Q Consensus 573 ~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 649 (740)
++|+++|+++.++ +|+ ..++..=+-++-..|+--+|++-+... .+..|...|.-|...|...|+++.|.-.++.
T Consensus 103 ~~A~e~y~~lL~d---dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 103 KEAIEYYESLLED---DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhHHHHHHHHhcc---CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 9999999999875 355 555666666777788888888777665 3567888999999999999999999999999
Q ss_pred hHccCCCCCcchHHHHHHHHhcCCch---HHHHHHHHHhhCCC
Q 004644 650 LSELEPQKTSCYALLSNMHAEAGRWD---EVEKVRVSMEGSGA 689 (740)
Q Consensus 650 ~~~~~p~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~ 689 (740)
++=+.|.+|..+..|+.++.-.|-.+ -|.+.+.+..+...
T Consensus 180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 180 LLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 99999999999999999988777543 45666666655444
No 129
>PF12854 PPR_1: PPR repeat
Probab=98.30 E-value=8.3e-07 Score=53.29 Aligned_cols=32 Identities=34% Similarity=0.631 Sum_probs=18.4
Q ss_pred CCCCChHHHHHHHHhhcccchHHHHHHHHHHh
Q 004644 551 GVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582 (740)
Q Consensus 551 ~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 582 (740)
|+.||.+||+.++.++++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 130
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=9.8e-05 Score=65.78 Aligned_cols=164 Identities=17% Similarity=0.160 Sum_probs=116.9
Q ss_pred HHHHhhccCCHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchH
Q 004644 496 LITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572 (740)
Q Consensus 496 l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~ 572 (740)
++-+...+|+.+.|...++.+. |.+..+-..-+.-+...|++++|+++|+.+++.+ +.|.+++-.-+...-..|+.
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCc
Confidence 3334445667777776666544 2222222222234566799999999999999875 55667777666666677888
Q ss_pred HHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CHHHHHHHH
Q 004644 573 DGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM-KIKP-NAGIWGTLLGACRMHQ---NIKLGRIAV 647 (740)
Q Consensus 573 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g---~~~~a~~~~ 647 (740)
.+|++-+....+. +..|.+.|..+.+.|...|++++|.=.++++ -..| ++..+..+...+...| +++.+...+
T Consensus 137 l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 137 LEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred HHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8888888888775 4456789999999999999999999888886 3566 5556666666655444 678899999
Q ss_pred HHhHccCCCCCcchH
Q 004644 648 EKLSELEPQKTSCYA 662 (740)
Q Consensus 648 ~~~~~~~p~~~~~~~ 662 (740)
++++++.|.+...+.
T Consensus 215 ~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 215 ERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHhChHhHHHHH
Confidence 999999997654443
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.26 E-value=0.00019 Score=78.20 Aligned_cols=57 Identities=16% Similarity=0.126 Sum_probs=34.6
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHhccc--CC-HHHHHHHHHHHHccCCHHHHHHH
Q 004644 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQMVN--KD-IVTWNTMIAGYAQIRQMDDAVKI 410 (740)
Q Consensus 354 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~ 410 (740)
+.+...|..|+..|...+++++|.++.+..++ |+ +..|..++..+.+.++..++..+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh
Confidence 44566777777777777777777777776654 22 23344444455666655555444
No 132
>PF12854 PPR_1: PPR repeat
Probab=98.25 E-value=1.3e-06 Score=52.37 Aligned_cols=32 Identities=38% Similarity=0.554 Sum_probs=20.8
Q ss_pred CCCCChhHHHHHHHHhhccCCHHHHHHHhccc
Q 004644 485 GYVNDLFVGNSLITMYAKCGRIQNAELLFKDA 516 (740)
Q Consensus 485 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 516 (740)
|+.||..+|++|+++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666655
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.0004 Score=62.54 Aligned_cols=76 Identities=12% Similarity=0.124 Sum_probs=57.4
Q ss_pred hccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHH
Q 004644 603 SRAGRLDEAFEMVKGMK--IKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVE 678 (740)
Q Consensus 603 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 678 (740)
.-.+++.+|.-+|+++. ..|+..+.+..+.+|...|++++|+.+++.++..+|++|+...++.-.-...|+-.++.
T Consensus 184 ~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 184 TGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred ccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHH
Confidence 33456777777777773 56777777777777778888888888888888888888888777776666777776654
No 134
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00013 Score=65.47 Aligned_cols=112 Identities=20% Similarity=0.231 Sum_probs=60.4
Q ss_pred HHhcCCChHHHHHHhcccCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC-CcchHHHHHHHHHH----cCCHHHHHH
Q 004644 211 GYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIR-NVVAWNAMIAAYVQ----RGQIEEAAR 285 (740)
Q Consensus 211 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~A~~ 285 (740)
.|...|++++|.+.... ..+..+...=+..+.+..+++-|.+.+++|..- +..+.+.|..++.+ .+...+|.-
T Consensus 117 i~~~~~~~deAl~~~~~--~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfy 194 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHL--GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFY 194 (299)
T ss_pred HhhcCCChHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHH
Confidence 45555566666555554 223333333344455555666666666666543 23444445555444 234566666
Q ss_pred HHhhCCC---CChhhHHHHHHHHhhhCCHHHHHHHHhhCCCC
Q 004644 286 LFIEMPE---RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324 (740)
Q Consensus 286 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 324 (740)
+|++|.+ |++.+.+..+.++...|++++|..+++..+.+
T Consensus 195 ifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 195 IFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 6666653 45555555555666666666666666655433
No 135
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=5.2e-06 Score=78.84 Aligned_cols=99 Identities=11% Similarity=0.109 Sum_probs=66.3
Q ss_pred hhhhhccCChHHHHHHHHh-CCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcC
Q 004644 599 IDLLSRAGRLDEAFEMVKG-MKIKPN-----AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672 (740)
Q Consensus 599 ~~~~~~~g~~~~A~~~~~~-~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 672 (740)
++-..+.|++.+|.+.+.. +.+.|+ ...|.....+..+.|+.++|+...+.+++++|.-..+|..-++.|...+
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 3445677778887777744 344443 3345555555667788888888888888888888778888888888888
Q ss_pred CchHHHHHHHHHhhCCCccCCcccE
Q 004644 673 RWDEVEKVRVSMEGSGAQKQPGCSW 697 (740)
Q Consensus 673 ~~~~a~~~~~~~~~~~~~~~~~~s~ 697 (740)
+|++|.+-+++..+.....++..+|
T Consensus 336 ~~e~AV~d~~~a~q~~~s~e~r~~l 360 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEKDCEIRRTL 360 (486)
T ss_pred HHHHHHHHHHHHHhhccccchHHHH
Confidence 8888887777665444333333333
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.20 E-value=1.8e-05 Score=78.61 Aligned_cols=121 Identities=16% Similarity=0.134 Sum_probs=90.2
Q ss_pred HHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 004644 560 IGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM-KIKP-NAGIWGTLLGACRMH 637 (740)
Q Consensus 560 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 637 (740)
.+++..+...++++.|+.+|+++.+. .|+ ....++..+...++-.+|.+++++. ...| +...+......|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 34445555566677777777776553 243 3345666666677777777777554 3334 444566666678889
Q ss_pred CCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHh
Q 004644 638 QNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685 (740)
Q Consensus 638 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 685 (740)
++++.|..+++++.++.|++...|..|+.+|...|+|++|+-.++.+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999998888775
No 137
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=1.5e-05 Score=72.96 Aligned_cols=104 Identities=17% Similarity=0.161 Sum_probs=69.5
Q ss_pred hcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHH
Q 004644 566 CSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPNAG-IWGTLLGACRMHQNIKL 642 (740)
Q Consensus 566 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~ 642 (740)
....+++.+|+..|..+++ +.|. ..-|..-.-+|.+.|.++.|++-.+.. .+.|... .|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 3456677777777777664 5665 444555567777777777777766543 4566544 67777777777788888
Q ss_pred HHHHHHHhHccCCCCCcchHHHHHHHHhcC
Q 004644 643 GRIAVEKLSELEPQKTSCYALLSNMHAEAG 672 (740)
Q Consensus 643 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 672 (740)
|++.|+++++++|++......|..+-.+.+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 888888888888887766666655443333
No 138
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.15 E-value=3e-06 Score=62.05 Aligned_cols=64 Identities=20% Similarity=0.156 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcC-CchHHHHHHHHHhh
Q 004644 623 NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG-RWDEVEKVRVSMEG 686 (740)
Q Consensus 623 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 686 (740)
++.+|..++..+...|+++.|+..++++++++|+++.+|..+|.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46688999999999999999999999999999999999999999999999 79999999987764
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.11 E-value=3.5e-05 Score=65.59 Aligned_cols=114 Identities=11% Similarity=0.109 Sum_probs=83.6
Q ss_pred HHHHHHHCCCCCCh-HHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC-C
Q 004644 543 LFEEMVMEGVAPDP-VTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-K 619 (740)
Q Consensus 543 ~~~~m~~~~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 619 (740)
.|++++. ..|+. .....+...+...|++++|.+.|+.+... .|+ ...+..++..+.+.|++++|...++.. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555 35544 34555666677788888888888877653 344 667778888888888888888887665 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcch
Q 004644 620 IKP-NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCY 661 (740)
Q Consensus 620 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 661 (740)
..| +...+..+...+...|+.+.|...++++++++|+++...
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 444 455777788888889999999999999999999887643
No 140
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.07 E-value=0.00063 Score=74.30 Aligned_cols=144 Identities=11% Similarity=0.164 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHccCCHHHHHHHHHhhCCCCCeecHHHHHHHHHcCCC
Q 004644 359 CWNVMIKGYAQCGRMDEAINLFRQMVN---KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEF 435 (740)
Q Consensus 359 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~ 435 (740)
++..++.+|.+.|+.++|..+++++++ .|+.+.|.++..|+.. +.++|.+++.+. +..+...++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA------------V~~~i~~kq 184 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKA------------IYRFIKKKQ 184 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHH------------HHHHHhhhc
Confidence 444555555555555555555555543 3345555555555555 555555555554 233444555
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHh-CCCCChhHHHHHHHHhhccCCHHHHHHHhc
Q 004644 436 HLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS-GYVNDLFVGNSLITMYAKCGRIQNAELLFK 514 (740)
Q Consensus 436 ~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 514 (740)
+.++.+++.++.... |+...+ -.++.+.+... |+.--..++-.+-..|.+..+++++..+|+
T Consensus 185 ~~~~~e~W~k~~~~~--~~d~d~---------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 185 YVGIEEIWSKLVHYN--SDDFDF---------------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred chHHHHHHHHHHhcC--cccchH---------------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 555555555555432 221111 01111111111 222233344445556666677777777777
Q ss_pred ccC---CCCcchHHHHHHHHH
Q 004644 515 DAD---PVDVISWNSLIAGYA 532 (740)
Q Consensus 515 ~~~---~~~~~~~~~l~~~~~ 532 (740)
.+. +.|..+..-++.+|.
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHH
Confidence 654 445555555666554
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.07 E-value=5.2e-05 Score=65.17 Aligned_cols=114 Identities=15% Similarity=0.098 Sum_probs=62.1
Q ss_pred cchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhCC-CCCCHH----HHHHHHHHHHhcCCHHH
Q 004644 569 VGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGMK-IKPNAG----IWGTLLGACRMHQNIKL 642 (740)
Q Consensus 569 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~----~~~~l~~~~~~~g~~~~ 642 (740)
.++...+...++.+.+.++-.|- ....-.++..+...|++++|.+.++... ..||.. ....|...+...|+++.
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 45555555555555554333221 2233345556666666666666665542 123321 23344555566666666
Q ss_pred HHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHH
Q 004644 643 GRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVS 683 (740)
Q Consensus 643 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 683 (740)
|+..++.. .-.|..+..+..+|++|.+.|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666442 22333455666777777777777777777664
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.07 E-value=6.5e-05 Score=74.66 Aligned_cols=126 Identities=17% Similarity=0.165 Sum_probs=103.9
Q ss_pred HHHHHHHHhhccCCHHHHHHHhcccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHhhcccc
Q 004644 492 VGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP-DPVTFIGVLSACSHVG 570 (740)
Q Consensus 492 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~a~~~~g 570 (740)
+..+|+..+...++++.|..+|+++...++..+..++..+...++-.+|++++++.+.. .| +...+......|...+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 34455666777889999999999998877878888889998889999999999999874 44 4445555666688999
Q ss_pred hHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhCCCCC
Q 004644 571 LVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGMKIKP 622 (740)
Q Consensus 571 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 622 (740)
+++.|..+.+++.. ..|+ ..+|..|+.+|...|++++|+..++.+|.-|
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999999975 6787 7899999999999999999999999987443
No 143
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.06 E-value=3e-06 Score=64.83 Aligned_cols=78 Identities=17% Similarity=0.234 Sum_probs=57.7
Q ss_pred cCChHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHH
Q 004644 605 AGRLDEAFEMVKGMK-IKP---NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKV 680 (740)
Q Consensus 605 ~g~~~~A~~~~~~~~-~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 680 (740)
.|++++|+.+++++- ..| +...|..+..++...|+++.|..++++ .+.+|.++.....+|.+|.+.|+|++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 467777777776651 222 445666677888888888888888888 778888777778888889999999999888
Q ss_pred HHH
Q 004644 681 RVS 683 (740)
Q Consensus 681 ~~~ 683 (740)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 874
No 144
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.04 E-value=6.9e-06 Score=59.16 Aligned_cols=59 Identities=19% Similarity=0.189 Sum_probs=50.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004644 630 LLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688 (740)
Q Consensus 630 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 688 (740)
+...+...|+++.|+..++++++.+|+++.++..+|.++...|++++|...++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45567788999999999999999999999999999999999999999999999886544
No 145
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.03 E-value=0.031 Score=59.60 Aligned_cols=91 Identities=18% Similarity=0.235 Sum_probs=47.3
Q ss_pred HHHHHHHhhccCCHH---HHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhh
Q 004644 493 GNSLITMYAKCGRIQ---NAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566 (740)
Q Consensus 493 ~~~l~~~~~~~g~~~---~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~ 566 (740)
.+.|++++-+.++.. +|+-+++... +.|..+=-.++..|...|-...|.++|+.+--..+..|..-+.. +.-+
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~ 517 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRA 517 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHH
Confidence 355666666666644 2344444333 33333334466677777777777777777655555555443322 2223
Q ss_pred cccchHHHHHHHHHHhhh
Q 004644 567 SHVGLVDGGLKLFECMTE 584 (740)
Q Consensus 567 ~~~g~~~~a~~~~~~~~~ 584 (740)
.-.|++..+...++....
T Consensus 518 ~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLK 535 (932)
T ss_pred HhcccchhHHHHHHHHHH
Confidence 334444444444444433
No 146
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.02 E-value=0.017 Score=56.49 Aligned_cols=73 Identities=16% Similarity=0.192 Sum_probs=59.0
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHh
Q 004644 612 FEMVKGMKIKP----NAGIWGTLLGA--CRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685 (740)
Q Consensus 612 ~~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 685 (740)
..+++..++.| +...-+.|..| ...+|++.++......+.++.| +|.+|.++|-.+....+|+||..++..+.
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 44556665554 33345556555 5689999999999999999999 89999999999999999999999998653
No 147
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.01 E-value=0.021 Score=57.17 Aligned_cols=162 Identities=10% Similarity=0.049 Sum_probs=117.8
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHH
Q 004644 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV-TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACM 598 (740)
Q Consensus 520 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 598 (740)
-..+|-.++..-.+..-...|..+|.++.+.+..+..+ ...+++. |.-+++..-|.++|+.-.+.||-.|. --.+.
T Consensus 365 ~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf~d~p~--yv~~Y 441 (656)
T KOG1914|consen 365 LTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME-YYCSKDKETAFRIFELGLKKFGDSPE--YVLKY 441 (656)
T ss_pred CceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhcCCChH--HHHHH
Confidence 34567788888888888899999999999998888444 4445554 55678999999999998887766664 33567
Q ss_pred hhhhhccCChHHHHHHHHhCC---CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCC----cchHHHHHHHH
Q 004644 599 IDLLSRAGRLDEAFEMVKGMK---IKPNA--GIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKT----SCYALLSNMHA 669 (740)
Q Consensus 599 ~~~~~~~g~~~~A~~~~~~~~---~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~ 669 (740)
++.+...|+-..|..+|+... ..|+. .+|..++.-=..-||+..+.++-++.....|.+. ..-..+..-|.
T Consensus 442 ldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~ 521 (656)
T KOG1914|consen 442 LDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYG 521 (656)
T ss_pred HHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHh
Confidence 788888898888988887762 34444 4799999877888999999999888877766221 12234455666
Q ss_pred hcCCchHHHHHHHHH
Q 004644 670 EAGRWDEVEKVRVSM 684 (740)
Q Consensus 670 ~~g~~~~a~~~~~~~ 684 (740)
=.+.+..-..-++.|
T Consensus 522 ~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 522 ILDLYPCSLDELKFL 536 (656)
T ss_pred hcccccccHHHHHhh
Confidence 667766655555544
No 148
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.00 E-value=1.3e-05 Score=49.21 Aligned_cols=35 Identities=40% Similarity=0.798 Sum_probs=32.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 004644 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP 556 (740)
Q Consensus 522 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 556 (740)
.+||+++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 149
>PRK15331 chaperone protein SicA; Provisional
Probab=98.00 E-value=3.6e-05 Score=64.60 Aligned_cols=100 Identities=11% Similarity=0.006 Sum_probs=85.0
Q ss_pred CCcCC-cchHHHHhhhhhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHH
Q 004644 587 AIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGMK-IKP-NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYAL 663 (740)
Q Consensus 587 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 663 (740)
|+.++ .+..-..+.-+...|++++|..+|+-+- ..| |..-|..|..+|...++++.|+..|..+..++++||.+++.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 56655 4444455666778999999999998763 333 66679999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHhh
Q 004644 664 LSNMHAEAGRWDEVEKVRVSMEG 686 (740)
Q Consensus 664 l~~~~~~~g~~~~a~~~~~~~~~ 686 (740)
.|..|...|+.++|...|....+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999997764
No 150
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.00 E-value=0.015 Score=59.81 Aligned_cols=200 Identities=14% Similarity=0.148 Sum_probs=129.4
Q ss_pred CCcchHHHHHHHHhcCCChHHHHHHhcccCC-CchhHHHHHH----------HHHHhcCChHHHHHHhccCCCCCcchHH
Q 004644 200 RDVVSWNLMLDGYVELDDLDSAWKFFQKIPE-QNVVSWVTML----------SGYARNGRMLEARRLFDQMPIRNVVAWN 268 (740)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~----------~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 268 (740)
|.+..|..++......-+++-|...|-+... +.......|. ..-.--|++++|.+++-.+.++|.
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL---- 765 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL---- 765 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh----
Confidence 5666777777766666666666666654431 1111111111 112234789999999888877765
Q ss_pred HHHHHHHHcCCHHHHHHHHhhCCCC-----ChhhHHHHHHHHhhhCCHHHHHHHHhhCCCCchhHHHHHHHHHHhcCChh
Q 004644 269 AMIAAYVQRGQIEEAARLFIEMPER-----NPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMD 343 (740)
Q Consensus 269 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 343 (740)
.|..+.+.|+|-...++++.--.. -...|+.+...+.....|+.|.+.+...... ...+..+.+...++
T Consensus 766 -Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~~~ecly~le~f~ 839 (1189)
T KOG2041|consen 766 -AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----ENQIECLYRLELFG 839 (1189)
T ss_pred -hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----HhHHHHHHHHHhhh
Confidence 456777888888888888764421 2356888888888888888888888765321 12345555555555
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHccCCHHHHHHHHHhhC
Q 004644 344 EANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMG 415 (740)
Q Consensus 344 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 415 (740)
+-+.+-..+ |.+....-.+.+++.+.|.-++|.+.|-+...|.. -+..|...+++.+|.++-++..
T Consensus 840 ~LE~la~~L-pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pka-----Av~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 840 ELEVLARTL-PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKA-----AVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred hHHHHHHhc-CcccchHHHHHHHHHhhchHHHHHHHHHhccCcHH-----HHHHHHHHHHHHHHHHHHHhcc
Confidence 555544444 45666777888889999998888888876655432 3455666777777777776653
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.99 E-value=3.7e-05 Score=60.79 Aligned_cols=94 Identities=20% Similarity=0.218 Sum_probs=78.1
Q ss_pred hHHHHhhhhhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhc
Q 004644 594 HYACMIDLLSRAGRLDEAFEMVKGM-KIKPN-AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEA 671 (740)
Q Consensus 594 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 671 (740)
.+..++..+...|++++|...++.. ...|+ ...+..+...+...|+++.|...++++++..|.++..+..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 3556777788889999999888765 34443 356777888888889999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhhC
Q 004644 672 GRWDEVEKVRVSMEGS 687 (740)
Q Consensus 672 g~~~~a~~~~~~~~~~ 687 (740)
|++++|...++...+.
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 9999999998877643
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.99 E-value=0.00019 Score=61.62 Aligned_cols=124 Identities=16% Similarity=0.141 Sum_probs=84.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC--cchHHH
Q 004644 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDP----VTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL--VEHYAC 597 (740)
Q Consensus 524 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 597 (740)
|..++..+ ..++...+.+.++.+.+. .|+. .....+...+...|++++|...|+.+... ...|. ......
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 34444444 467788888888888775 3333 23344556677888888888888888774 22222 223455
Q ss_pred HhhhhhccCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 004644 598 MIDLLSRAGRLDEAFEMVKGMKIKP-NAGIWGTLLGACRMHQNIKLGRIAVEKLS 651 (740)
Q Consensus 598 l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 651 (740)
++.++...|++++|+..++..+..+ ....+..++.++...|+.+.|+..|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 7788888899999998887764332 34456667778888999999999888764
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.98 E-value=4.6e-05 Score=63.25 Aligned_cols=95 Identities=14% Similarity=0.036 Sum_probs=62.9
Q ss_pred hHHHHhhhhhccCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCC---CcchHHHH
Q 004644 594 HYACMIDLLSRAGRLDEAFEMVKGMK-IKPN----AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK---TSCYALLS 665 (740)
Q Consensus 594 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 665 (740)
++..++..+.+.|++++|.+.++.+. ..|+ ...+..+..++...|+++.|...+++++...|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44556666667777777777665552 2232 2345556666777777777777777777777765 34577777
Q ss_pred HHHHhcCCchHHHHHHHHHhhCC
Q 004644 666 NMHAEAGRWDEVEKVRVSMEGSG 688 (740)
Q Consensus 666 ~~~~~~g~~~~a~~~~~~~~~~~ 688 (740)
.++.+.|++++|.+.++.+.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 77777777777777777776544
No 154
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.97 E-value=0.041 Score=58.79 Aligned_cols=158 Identities=16% Similarity=0.094 Sum_probs=89.5
Q ss_pred hHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHH
Q 004644 523 SWNSLIAGYAINGNAT---EAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACM 598 (740)
Q Consensus 523 ~~~~l~~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 598 (740)
+-+.|+..+.+.++.. +|+-+++.-.... +-|..+-..++..|+..|-...|.+.|+.+--+ .|.-+ ..|+ +
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~--~ 513 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL--I 513 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH--H
Confidence 3566778888777654 5666666655531 334446677888999999999999999988655 55555 3332 2
Q ss_pred hhhhhccCChHHHHHHHHhCC-C-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCC----CcchHHHHHHHHhc
Q 004644 599 IDLLSRAGRLDEAFEMVKGMK-I-KPN-AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK----TSCYALLSNMHAEA 671 (740)
Q Consensus 599 ~~~~~~~g~~~~A~~~~~~~~-~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~ 671 (740)
...+...|++..+...++..- + ..+ ..+-..+..+| ++|.+..-.+...---.+.-.. ...-..........
T Consensus 514 ~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~ 592 (932)
T KOG2053|consen 514 FRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNA 592 (932)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334556677777766665431 1 111 11222233344 5677766554432211111110 11123344456667
Q ss_pred CCchHHHHHHHHHh
Q 004644 672 GRWDEVEKVRVSME 685 (740)
Q Consensus 672 g~~~~a~~~~~~~~ 685 (740)
++.++=.+....|+
T Consensus 593 ~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 593 DRGTQLLKLLESMK 606 (932)
T ss_pred CcHHHHHHHHhccc
Confidence 77777777777776
No 155
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.96 E-value=0.011 Score=60.81 Aligned_cols=161 Identities=14% Similarity=0.125 Sum_probs=102.3
Q ss_pred CChHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHhcCCCCC-----cccHHHHHHHHHhCCChHHHHHHHHh
Q 004644 122 GELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN-----IVSWNSMLSGYTKNGEMHLASKFFEA 196 (740)
Q Consensus 122 ~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~ 196 (740)
|.+++|.+++-.+.. ...-+.++.+.|++-...++++.--..+ ..+|+.++..++....+++|.+.|..
T Consensus 748 g~feeaek~yld~dr------rDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADR------RDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred cchhHhhhhhhccch------hhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677777777766532 1223556666677766666665533211 23677777777777778888777776
Q ss_pred cccCCcchHHHHHHHHhcCCChHHHHHHhcccCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHH
Q 004644 197 MEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQ 276 (740)
Q Consensus 197 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 276 (740)
... ....+.++....++++-..+... +|.+......++.++.+.|.-++|.+.|-+...|. +.+..|..
T Consensus 822 ~~~-----~e~~~ecly~le~f~~LE~la~~-Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~ 890 (1189)
T KOG2041|consen 822 CGD-----TENQIECLYRLELFGELEVLART-LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVE 890 (1189)
T ss_pred ccc-----hHhHHHHHHHHHhhhhHHHHHHh-cCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHH
Confidence 532 12345555555555554443333 35666677788888888888888888876654442 34566777
Q ss_pred cCCHHHHHHHHhhCCCCChhhHH
Q 004644 277 RGQIEEAARLFIEMPERNPVSWT 299 (740)
Q Consensus 277 ~g~~~~A~~~~~~~~~~~~~~~~ 299 (740)
.++|.+|.++-++..-|...|..
T Consensus 891 LnQW~~avelaq~~~l~qv~tli 913 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRFQLPQVQTLI 913 (1189)
T ss_pred HHHHHHHHHHHHhccchhHHHHH
Confidence 88888888888877666555543
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.94 E-value=8.4e-05 Score=74.43 Aligned_cols=102 Identities=18% Similarity=0.188 Sum_probs=61.3
Q ss_pred HHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 004644 563 LSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKP-NAGIWGTLLGACRMHQN 639 (740)
Q Consensus 563 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 639 (740)
.......|++++|+.+|+++++ ..|+ ...|..++.+|.+.|++++|+..++.. ...| +...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 3445556667777777766664 3444 555666666666666666666666544 3344 33356666666666666
Q ss_pred HHHHHHHHHHhHccCCCCCcchHHHHHH
Q 004644 640 IKLGRIAVEKLSELEPQKTSCYALLSNM 667 (740)
Q Consensus 640 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 667 (740)
++.|+..++++++++|+++.....+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 6666666666666666666655554433
No 157
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=4.8e-05 Score=70.38 Aligned_cols=112 Identities=19% Similarity=0.177 Sum_probs=93.5
Q ss_pred CCcCC-cchHHHHhhhhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHhHccCCCCCcc
Q 004644 587 AIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKP-NAGIWGTLLGACRMH---QNIKLGRIAVEKLSELEPQKTSC 660 (740)
Q Consensus 587 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~ 660 (740)
.-+|+ .+.|..|+..|.+.|+...|..-+... ...| ++..+..+..++..+ .+..++...+++++.++|.|..+
T Consensus 150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 45677 999999999999999999999988654 4554 556777777776543 35688999999999999999999
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCcccEE
Q 004644 661 YALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWI 698 (740)
Q Consensus 661 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~ 698 (740)
...|+-.+...|++.+|...++.|.+......|..+.|
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 99999999999999999999999998887666655444
No 158
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.90 E-value=6.9e-05 Score=68.79 Aligned_cols=91 Identities=14% Similarity=0.137 Sum_probs=78.7
Q ss_pred HhhhhhccCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCch
Q 004644 598 MIDLLSRAGRLDEAFEMVKG-MKIKP-NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWD 675 (740)
Q Consensus 598 l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 675 (740)
=++-+.+.+++++|+..+.. +.+.| |++.|..-..+|.+.|.++.|++.++.++.++|....+|..|+.+|...|+++
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 34556778999999999865 46777 55667778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCC
Q 004644 676 EVEKVRVSMEGSG 688 (740)
Q Consensus 676 ~a~~~~~~~~~~~ 688 (740)
+|.+.|++..+..
T Consensus 167 ~A~~aykKaLeld 179 (304)
T KOG0553|consen 167 EAIEAYKKALELD 179 (304)
T ss_pred HHHHHHHhhhccC
Confidence 9999999776533
No 159
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.87 E-value=6.9e-06 Score=49.25 Aligned_cols=32 Identities=28% Similarity=0.488 Sum_probs=30.6
Q ss_pred HHHhHccCCCCCcchHHHHHHHHhcCCchHHH
Q 004644 647 VEKLSELEPQKTSCYALLSNMHAEAGRWDEVE 678 (740)
Q Consensus 647 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 678 (740)
++++++++|+++.+|..||.+|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68999999999999999999999999999986
No 160
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.87 E-value=2.3e-05 Score=57.11 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=44.9
Q ss_pred HhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhh
Q 004644 635 RMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEG 686 (740)
Q Consensus 635 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 686 (740)
...|+++.|+..++++++.+|+++.++..++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999999999999999886653
No 161
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.86 E-value=1.7e-05 Score=75.20 Aligned_cols=118 Identities=11% Similarity=0.059 Sum_probs=71.3
Q ss_pred chHHHHHHHHhcCCChHHHHHHhcccC---------CCchhHHHHHHHHHHhcCChHHHHHHhccCC-------CCCc--
Q 004644 203 VSWNLMLDGYVELDDLDSAWKFFQKIP---------EQNVVSWVTMLSGYARNGRMLEARRLFDQMP-------IRNV-- 264 (740)
Q Consensus 203 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~-- 264 (740)
.+|..++..|.-+|+++.|+..++.-+ .....++..++.++.-.|+++.|.+.++... .+.+
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 345556666667778888887776533 1223456677777777888888877776432 2222
Q ss_pred chHHHHHHHHHHcCCHHHHHHHHhhCCC---------CChhhHHHHHHHHhhhCCHHHHHHHHhh
Q 004644 265 VAWNAMIAAYVQRGQIEEAARLFIEMPE---------RNPVSWTTMIDGYVRIAKLDEARRLLDQ 320 (740)
Q Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 320 (740)
.+..+|.+.|.-...+++|+..+.+-.. -...++-++..++...|.-+.|+.+.+.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3445566677666777777776655331 1223455566666666666666655444
No 162
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.85 E-value=3.1e-05 Score=46.98 Aligned_cols=33 Identities=36% Similarity=0.678 Sum_probs=27.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 004644 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP 554 (740)
Q Consensus 522 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 554 (740)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888777
No 163
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.85 E-value=1.2e-05 Score=76.32 Aligned_cols=258 Identities=14% Similarity=0.079 Sum_probs=149.9
Q ss_pred HHHHHccCChhHHHHHHhhccCC---Cc----cchHHHHHHHHcCCChhHHHHHHhhCC-------C--CCcchHHHHHH
Q 004644 22 ITQLGKSGRVEEAIKIFSQMSQK---NT----VTYNSMISAYAKNGRVNDARKLFEQMP-------Q--RNLVSWNSMIA 85 (740)
Q Consensus 22 ~~~~~~~g~~~~A~~~~~~~~~~---~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~--~~~~~~~~l~~ 85 (740)
..-++|.|+....+.+|+...+- |. ..|..|+++|...+++++|++....=. . ....+--.|+.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 45578888888888888876532 21 256667777777788888877653211 0 11222334556
Q ss_pred HHhcCCChHHHHHHHHhccC---------CCcccHHHHHHHHHcCCChHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 004644 86 GYLHNDKVKEARELFDKMFR---------PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNY 156 (740)
Q Consensus 86 ~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 156 (740)
.+.-.|.+++|+.+..+.+. .....+..+..+|...|.--. .+.+.+...++.=+. ..+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g-------~~~pee~g~f~~ev~-----~al 171 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTG-------LEAPEEKGAFNAEVT-----SAL 171 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccC-------CCChhhcccccHHHH-----HHH
Confidence 66667777777766554431 112234445555544432100 000000000000000 011
Q ss_pred hhHHHHHhcCC-------C--CCcccHHHHHHHHHhCCChHHHHHHHHhccc---------CCcchHHHHHHHHhcCCCh
Q 004644 157 NEAKKLLDAMP-------S--KNIVSWNSMLSGYTKNGEMHLASKFFEAMEE---------RDVVSWNLMLDGYVELDDL 218 (740)
Q Consensus 157 ~~A~~~~~~~~-------~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~ 218 (740)
+.|.+.|..-. . .-..+|..|+..|.-.|+++.|+...+.-++ ....++..++.++.-.|++
T Consensus 172 ~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~f 251 (639)
T KOG1130|consen 172 ENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNF 251 (639)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhccc
Confidence 22333332211 0 1123566677777777888888877654432 2234667788888888888
Q ss_pred HHHHHHhcccC---------CCchhHHHHHHHHHHhcCChHHHHHHhccCC-------C--CCcchHHHHHHHHHHcCCH
Q 004644 219 DSAWKFFQKIP---------EQNVVSWVTMLSGYARNGRMLEARRLFDQMP-------I--RNVVAWNAMIAAYVQRGQI 280 (740)
Q Consensus 219 ~~a~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~--~~~~~~~~l~~~~~~~g~~ 280 (740)
+.|.+.|+... .....+..+|+..|.-..++++|+.++.+-. . -...++-+|..+|...|..
T Consensus 252 e~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h 331 (639)
T KOG1130|consen 252 ELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEH 331 (639)
T ss_pred HhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhH
Confidence 88888887654 2234567888888888888999998887632 1 1335666788999999999
Q ss_pred HHHHHHHhhCC
Q 004644 281 EEAARLFIEMP 291 (740)
Q Consensus 281 ~~A~~~~~~~~ 291 (740)
++|+.+.+...
T Consensus 332 ~kAl~fae~hl 342 (639)
T KOG1130|consen 332 RKALYFAELHL 342 (639)
T ss_pred HHHHHHHHHHH
Confidence 99988766543
No 164
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.85 E-value=4e-05 Score=56.73 Aligned_cols=59 Identities=12% Similarity=0.098 Sum_probs=53.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004644 631 LGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689 (740)
Q Consensus 631 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 689 (740)
...+...++++.|..+++++++++|+++..+..+|.+|...|++++|.+.++...+..+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35677899999999999999999999999999999999999999999999998876554
No 165
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.84 E-value=0.00013 Score=60.46 Aligned_cols=99 Identities=9% Similarity=0.084 Sum_probs=59.2
Q ss_pred HHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHH
Q 004644 562 VLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPN----AGIWGTLLGACR 635 (740)
Q Consensus 562 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~ 635 (740)
....+...|++++|...|..+.+.++-.|. ...+..++.++.+.|++++|.+.++.+ ...|+ ..++..+..++.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 333444455555555555555443221111 234455666677777777777766654 22232 345666777777
Q ss_pred hcCCHHHHHHHHHHhHccCCCCCcc
Q 004644 636 MHQNIKLGRIAVEKLSELEPQKTSC 660 (740)
Q Consensus 636 ~~g~~~~a~~~~~~~~~~~p~~~~~ 660 (740)
..|+.+.|...++++++..|+++..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 88 ELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HhCChHHHHHHHHHHHHHCcCChhH
Confidence 8888888888888888888887653
No 166
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.82 E-value=3.6e-05 Score=47.08 Aligned_cols=34 Identities=32% Similarity=0.518 Sum_probs=31.5
Q ss_pred ecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCC
Q 004644 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKAD 454 (740)
Q Consensus 421 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 454 (740)
.+||.++.+|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999997
No 167
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.80 E-value=0.043 Score=53.73 Aligned_cols=123 Identities=22% Similarity=0.276 Sum_probs=70.4
Q ss_pred hHHHHHHHHhhccCCHHHHHHHhcccC-----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHH-HHHHH
Q 004644 491 FVGNSLITMYAKCGRIQNAELLFKDAD-----PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTF-IGVLS 564 (740)
Q Consensus 491 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~ll~ 564 (740)
.++..+++.-.+..-++.|+.+|-++. .+++..+++++.-++. |+..-|..+|+--.. ..||...| .-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~--~f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL--KFPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH--hCCCchHHHHHHHH
Confidence 344455555555555666666665443 3455666666665553 556666777765433 24444433 23444
Q ss_pred hhcccchHHHHHHHHHHhhhhcCCcCC--cchHHHHhhhhhccCChHHHHHHHHhC
Q 004644 565 ACSHVGLVDGGLKLFECMTEVYAIEPL--VEHYACMIDLLSRAGRLDEAFEMVKGM 618 (740)
Q Consensus 565 a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 618 (740)
-+...|+-..|+.+|+..+.+ +..+ ...|..|++-=..-|++..+..+=+.+
T Consensus 475 fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 475 FLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 456667777777777755543 2222 456777777667777777766554444
No 168
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.0025 Score=61.34 Aligned_cols=325 Identities=10% Similarity=-0.012 Sum_probs=168.2
Q ss_pred HHHhcCChhHHHHHHhh---cCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcccCC---HHHHHHHHHHHHccCCHHHHH
Q 004644 335 GYVQNKRMDEANQIFDK---IGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKD---IVTWNTMIAGYAQIRQMDDAV 408 (740)
Q Consensus 335 ~~~~~~~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~ 408 (740)
.+.+...+.+|+..+.. +-+.+...|..-+..+...|++++|.--.++-++.+ +....-...++...++..+|.
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHH
Confidence 34444445555554443 224455666666666777777777766665554311 112222333333334444444
Q ss_pred HHHHhhCCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCC-CCCHHHHHHHH-HHhhhhhhhHHHHHHHHHHHHhCC
Q 004644 409 KIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGK-KADHSTLACAL-SACAHLAALQLGRQIHHLAIKSGY 486 (740)
Q Consensus 409 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~~l-~~~~~~~~~~~a~~~~~~~~~~g~ 486 (740)
+.++.-. .+ ....|+..++....... +|...++..+- .++...++.+.|.++-..+.+..-
T Consensus 138 ~~~~~~~------~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~ 200 (486)
T KOG0550|consen 138 EKLKSKQ------AY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA 200 (486)
T ss_pred HHhhhhh------hh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc
Confidence 4433110 00 01111111211111111 12222322221 223445666666666666555432
Q ss_pred CCChhHHHHHHHHhhccCCHHHHHHHhcccCCCCcc---------------hHHHHHHHHHhcCChHHHHHHHHHHHHC-
Q 004644 487 VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVI---------------SWNSLIAGYAINGNATEAIKLFEEMVME- 550 (740)
Q Consensus 487 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------------~~~~l~~~~~~~g~~~~A~~~~~~m~~~- 550 (740)
. +......-...+.-.++.+.|...|++....++. .|..-..-..+.|++..|.+.|.+.+..
T Consensus 201 ~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id 279 (486)
T KOG0550|consen 201 T-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID 279 (486)
T ss_pred c-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence 1 1111111112233456677777777766533332 2334445566788889999999888873
Q ss_pred --CCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC-CCCCCHH-
Q 004644 551 --GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPNAG- 625 (740)
Q Consensus 551 --~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~- 625 (740)
+++|+...|.....+..+.|+.++|+.--+...+ +.|+ +..|..-+.++...++|++|.+-+++. ....+..
T Consensus 280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~ 356 (486)
T KOG0550|consen 280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEI 356 (486)
T ss_pred ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Confidence 2344555666666777888899998888887754 6666 666666677777788888888877553 3222211
Q ss_pred --HHHHHHHHHH---------------hcCCHHHHHHHHHHhHccCCCCCcc--------hHHHHHHHHhcCCchHHHHH
Q 004644 626 --IWGTLLGACR---------------MHQNIKLGRIAVEKLSELEPQKTSC--------YALLSNMHAEAGRWDEVEKV 680 (740)
Q Consensus 626 --~~~~l~~~~~---------------~~g~~~~a~~~~~~~~~~~p~~~~~--------~~~l~~~~~~~g~~~~a~~~ 680 (740)
+|.-...++. ...+.+.....-..++...|+-... +...++.|...++..++.+.
T Consensus 357 r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ 436 (486)
T KOG0550|consen 357 RRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRF 436 (486)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 2222222221 2222233333334456667765432 45667778877777777654
No 169
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.78 E-value=0.038 Score=53.04 Aligned_cols=255 Identities=17% Similarity=0.132 Sum_probs=158.0
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccC-----CCCcchH--HHHHHHHH
Q 004644 460 CALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD-----PVDVISW--NSLIAGYA 532 (740)
Q Consensus 460 ~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~--~~l~~~~~ 532 (740)
.+.-...+.|+.+.++++-+..-..- +.-.....+++...+..|+++.|+++.+.-. .+++.-- -.|+.+-+
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 33334455667777766666554432 2235667788888889999999999887543 4443211 12222211
Q ss_pred ---hcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCCh
Q 004644 533 ---INGNATEAIKLFEEMVMEGVAPDPV-TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608 (740)
Q Consensus 533 ---~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 608 (740)
..-+...|.+.-.+..+ +.||-+ .-..-..++.+.|+..++-.+++.+-+ ..|-+..+.. ....|.|+.
T Consensus 238 ~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~l--Y~~ar~gdt 310 (531)
T COG3898 238 MSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALL--YVRARSGDT 310 (531)
T ss_pred HHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHH--HHHhcCCCc
Confidence 12356677777766666 577765 344456778999999999999999865 4565554433 334566654
Q ss_pred HHH--HH--HHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhc-CCchHHHHHHH
Q 004644 609 DEA--FE--MVKGMKIKPNA-GIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEA-GRWDEVEKVRV 682 (740)
Q Consensus 609 ~~A--~~--~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~ 682 (740)
... .. -+.+ .+||. .+..++..+...-|++..|....+.+....|... +|.+|+++-... |+-.++...+-
T Consensus 311 a~dRlkRa~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 311 ALDRLKRAKKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES-AYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred HHHHHHHHHHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHHhhccCchHHHHHHHH
Confidence 322 11 2233 45544 4666777778889999999999999999999865 788999987765 99988888776
Q ss_pred HHhhCCCccCCcccEEEEcCEEEEEecCCCCCCChHHHHHHHHHH
Q 004644 683 SMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727 (740)
Q Consensus 683 ~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l 727 (740)
+..... .+|.++--.+-+.....++.+..--.+-|++....+|
T Consensus 388 qav~AP--rdPaW~adg~vse~wapvspvtgRLdafewkap~~qL 430 (531)
T COG3898 388 QAVKAP--RDPAWTADGVVSEAWAPVSPVTGRLDAFEWKAPTGQL 430 (531)
T ss_pred HHhcCC--CCCcccccCcccccccccCCchhhhhhhhhcCchhhh
Confidence 554322 3465554444344443444333333334444433333
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.73 E-value=0.00016 Score=64.25 Aligned_cols=97 Identities=13% Similarity=0.038 Sum_probs=73.2
Q ss_pred cchHHHHhhhhhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHH
Q 004644 592 VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPN----AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSN 666 (740)
Q Consensus 592 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 666 (740)
...+..++..+.+.|++++|...+++. ...|+ ...+..+...+...|+++.|+..++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 445667777777888888888877654 22222 3467888888889999999999999999999999999999999
Q ss_pred HHHhcCC--------------chHHHHHHHHHhhCC
Q 004644 667 MHAEAGR--------------WDEVEKVRVSMEGSG 688 (740)
Q Consensus 667 ~~~~~g~--------------~~~a~~~~~~~~~~~ 688 (740)
+|...|+ +++|.+++++....+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 9988887 456666666555433
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.71 E-value=0.00023 Score=71.28 Aligned_cols=105 Identities=11% Similarity=0.160 Sum_probs=84.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhh
Q 004644 525 NSLIAGYAINGNATEAIKLFEEMVMEGVAPD-PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLL 602 (740)
Q Consensus 525 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~ 602 (740)
...+..+...|++++|++.|+++++. .|+ ...+..+..++...|++++|+..+++++. +.|+ ...|..++.+|
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHH
Confidence 34466778889999999999999985 554 55778888899999999999999999986 5676 77888999999
Q ss_pred hccCChHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 004644 603 SRAGRLDEAFEMVKGM-KIKPNAGIWGTLLGAC 634 (740)
Q Consensus 603 ~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~ 634 (740)
...|++++|+..++.. ...|+.......+..|
T Consensus 81 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999775 5667666555554444
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.68 E-value=0.0001 Score=53.01 Aligned_cols=61 Identities=21% Similarity=0.260 Sum_probs=49.8
Q ss_pred HhhhhhccCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCC
Q 004644 598 MIDLLSRAGRLDEAFEMVKGM-KIKPNA-GIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKT 658 (740)
Q Consensus 598 l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 658 (740)
++..+.+.|++++|.+.++.. ...|+. ..|..+..++...|+++.|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788899999999999776 455644 4788899999999999999999999999999875
No 173
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.68 E-value=0.00022 Score=59.71 Aligned_cols=89 Identities=15% Similarity=0.090 Sum_probs=49.1
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHhccC--C-CcccHHHHHHHHHcCCChHHHHHHHhhC--CCCCChhhHHHHHHHHHh
Q 004644 78 VSWNSMIAGYLHNDKVKEARELFDKMFR--P-DLFSWALMITCYTRKGELEKARELFDLL--PNKEDTACWNAMVAGYAK 152 (740)
Q Consensus 78 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~ 152 (740)
.....++..+...|++++|..+|+.... | +...|..|+.++-..|++++|+..|..+ ..+.++..+..++.++.+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 3344455555555555555555555432 2 2334455555555556666666666554 344555666666666666
Q ss_pred cCChhhHHHHHhcC
Q 004644 153 IGNYNEAKKLLDAM 166 (740)
Q Consensus 153 ~g~~~~A~~~~~~~ 166 (740)
.|+.+.|++.|+..
T Consensus 116 lG~~~~A~~aF~~A 129 (157)
T PRK15363 116 CDNVCYAIKALKAV 129 (157)
T ss_pred cCCHHHHHHHHHHH
Confidence 66666666666543
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.67 E-value=0.0011 Score=69.33 Aligned_cols=41 Identities=20% Similarity=0.215 Sum_probs=27.7
Q ss_pred ccCCCCcchHHHHHHHHHhc--C---ChHHHHHHHHHHHHCCCCCChH
Q 004644 515 DADPVDVISWNSLIAGYAIN--G---NATEAIKLFEEMVMEGVAPDPV 557 (740)
Q Consensus 515 ~~~~~~~~~~~~l~~~~~~~--g---~~~~A~~~~~~m~~~~~~p~~~ 557 (740)
...+.+..+|...+.+.... + ...+|+++|++.++ ..|+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a 376 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFT 376 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcH
Confidence 33466777787777664432 2 36688999999888 477753
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.66 E-value=0.0044 Score=60.16 Aligned_cols=97 Identities=14% Similarity=0.147 Sum_probs=56.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----hH-HHHHHHHhhcccchHHHHHHHHHHhhhhc-CCcCC--cc
Q 004644 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD-----PV-TFIGVLSACSHVGLVDGGLKLFECMTEVY-AIEPL--VE 593 (740)
Q Consensus 523 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~ 593 (740)
++..++..+.+.|++++|+++|++....-...+ .. .|...+-++...|++..|...|+...... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 455677788899999999999998876432211 11 23333445666788888888888876421 12222 22
Q ss_pred hHHHHhhhhhc--cCChHHHHHHHHhCC
Q 004644 594 HYACMIDLLSR--AGRLDEAFEMVKGMK 619 (740)
Q Consensus 594 ~~~~l~~~~~~--~g~~~~A~~~~~~~~ 619 (740)
....|++++-. ...+++|+.-++++.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 33445555532 345666666676664
No 176
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.66 E-value=8.4e-05 Score=45.03 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=29.2
Q ss_pred ecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCC
Q 004644 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGKKA 453 (740)
Q Consensus 421 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 453 (740)
.+|+.++.+|.+.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578899999999999999999999999998887
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.63 E-value=0.00024 Score=63.02 Aligned_cols=92 Identities=11% Similarity=-0.077 Sum_probs=72.9
Q ss_pred cchHHHHhhhhhccCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHH
Q 004644 592 VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPN----AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSN 666 (740)
Q Consensus 592 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 666 (740)
...|..++..+...|++++|...++.. ...|+ ..+|..+...+...|++++|+..++++++++|..+..+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445667777788888888888887665 22222 2478888889999999999999999999999999999999999
Q ss_pred HHH-------hcCCchHHHHHHHH
Q 004644 667 MHA-------EAGRWDEVEKVRVS 683 (740)
Q Consensus 667 ~~~-------~~g~~~~a~~~~~~ 683 (740)
+|. ..|++++|...+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 999 88888866555543
No 178
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.61 E-value=0.00094 Score=59.40 Aligned_cols=131 Identities=15% Similarity=0.148 Sum_probs=92.2
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchH
Q 004644 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD--PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHY 595 (740)
Q Consensus 519 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~ 595 (740)
.....+..++..+...|++++|+..|++.++.+..|+ ...+..+..++.+.|++++|+.+++++.+ ..|+ ...+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~ 109 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSAL 109 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHH
Confidence 3445677788888889999999999999887533332 34677777888888999999998888876 3454 5566
Q ss_pred HHHhhhhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCC
Q 004644 596 ACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGR 673 (740)
Q Consensus 596 ~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 673 (740)
..++.++...|+...+..-.+.. .+.++.|...++++++++|++ |..+.+.+...|+
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 66777777777766655332211 122578889999999999987 5555566655554
No 179
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.59 E-value=0.0088 Score=58.09 Aligned_cols=119 Identities=21% Similarity=0.276 Sum_probs=66.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhccc-chHHHHHHHHHHhhhhcCCcCC----cchHHHHhhh
Q 004644 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV-GLVDGGLKLFECMTEVYAIEPL----VEHYACMIDL 601 (740)
Q Consensus 527 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~ 601 (740)
.+..|...|++..|-..+.++- ..|... |++++|+++|+++.+.|..... ...+..++.+
T Consensus 100 A~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 3445555555555555554432 234444 6666666666666654332222 3345667778
Q ss_pred hhccCChHHHHHHHHhCC---CC-C----CHH-HHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcc
Q 004644 602 LSRAGRLDEAFEMVKGMK---IK-P----NAG-IWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSC 660 (740)
Q Consensus 602 ~~~~g~~~~A~~~~~~~~---~~-p----~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 660 (740)
+.+.|++++|.+++++.. .. | +.. .+...+-.+...||...|...+++..+.+|.-...
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 888888888888886652 11 1 111 12222334456788889999999988888865443
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.59 E-value=0.0016 Score=57.78 Aligned_cols=122 Identities=14% Similarity=0.084 Sum_probs=76.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHH
Q 004644 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD--PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACM 598 (740)
Q Consensus 522 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 598 (740)
..|..++..+...|++++|+..|++.......|. ..++..+..++...|+.++|+..++...+ +.|+ ...+..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~l 112 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHHH
Confidence 4567777788888899999999988876532222 23667777778888888888888887765 3444 4455555
Q ss_pred hhhhhccC-------ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhc
Q 004644 599 IDLLSRAG-------RLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEA 671 (740)
Q Consensus 599 ~~~~~~~g-------~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 671 (740)
+.++...| ++++|.. .++.|...++++++.+|++. ......+...
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~-------------------------~~~~a~~~~~~a~~~~p~~~---~~~~~~~~~~ 164 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEA-------------------------WFDQAAEYWKQAIALAPGNY---IEAQNWLKIT 164 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHH-------------------------HHHHHHHHHHHHHHhCcccH---HHHHHHHHHh
Confidence 55555333 2222221 23466677778888888653 2333334444
Q ss_pred CCc
Q 004644 672 GRW 674 (740)
Q Consensus 672 g~~ 674 (740)
|++
T Consensus 165 ~~~ 167 (168)
T CHL00033 165 GRF 167 (168)
T ss_pred cCC
Confidence 443
No 181
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.54 E-value=0.0031 Score=59.18 Aligned_cols=54 Identities=13% Similarity=0.033 Sum_probs=46.7
Q ss_pred HHHHhcCCHHHHHHHHHHhHccCCCCC---cchHHHHHHHHhcCCchHHHHHHHHHh
Q 004644 632 GACRMHQNIKLGRIAVEKLSELEPQKT---SCYALLSNMHAEAGRWDEVEKVRVSME 685 (740)
Q Consensus 632 ~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~ 685 (740)
.-|.+.|++.-|..-++.+++-.|+.+ ++...+..+|...|..++|..+...+.
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 447788999999999999999998874 567889999999999999999887664
No 182
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.52 E-value=0.00015 Score=55.33 Aligned_cols=79 Identities=18% Similarity=0.329 Sum_probs=37.2
Q ss_pred cCChHHHHHHHHHHHHCCC-CCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHH
Q 004644 534 NGNATEAIKLFEEMVMEGV-APDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEA 611 (740)
Q Consensus 534 ~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 611 (740)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|+.+++. . ...|. ......++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3556666666666665321 11223333455555556666666555555 1 12222 22223345555555555555
Q ss_pred HHHHH
Q 004644 612 FEMVK 616 (740)
Q Consensus 612 ~~~~~ 616 (740)
++.++
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55544
No 183
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.50 E-value=0.00015 Score=42.81 Aligned_cols=31 Identities=42% Similarity=0.804 Sum_probs=25.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 004644 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGV 552 (740)
Q Consensus 522 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 552 (740)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887763
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.48 E-value=0.0016 Score=52.78 Aligned_cols=93 Identities=24% Similarity=0.257 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhh
Q 004644 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPD--PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMID 600 (740)
Q Consensus 524 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 600 (740)
...+..++-..|+.++|+.+|++....|..+. ...+..+.+++...|++++|..+++.....++-.+. ......+..
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 44567788889999999999999999886665 336777888899999999999999998876433222 222233455
Q ss_pred hhhccCChHHHHHHHH
Q 004644 601 LLSRAGRLDEAFEMVK 616 (740)
Q Consensus 601 ~~~~~g~~~~A~~~~~ 616 (740)
++...|+.++|++.+-
T Consensus 84 ~L~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLL 99 (120)
T ss_pred HHHHCCCHHHHHHHHH
Confidence 7788899999988663
No 185
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.45 E-value=0.002 Score=67.58 Aligned_cols=135 Identities=13% Similarity=0.005 Sum_probs=98.4
Q ss_pred CCCChHHHHHHHHhhcc-----cchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhcc--------CChHHHHHHHHh
Q 004644 552 VAPDPVTFIGVLSACSH-----VGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRA--------GRLDEAFEMVKG 617 (740)
Q Consensus 552 ~~p~~~~~~~ll~a~~~-----~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~ 617 (740)
.++|...|...+.+... .+....|+.+|+++.+ ..|+ ...|..+..++... +++..+.+....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 45666788888777543 2347799999999986 6788 55566554444322 123344444443
Q ss_pred C---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 004644 618 M---K-IKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQ 690 (740)
Q Consensus 618 ~---~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 690 (740)
. + ...++.++..+.......|++++|...++++++++| +..+|..+|.+|...|+.++|...+++.....+.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 2 2 233556777776666778999999999999999999 4789999999999999999999999988766553
No 186
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.43 E-value=0.00054 Score=67.73 Aligned_cols=65 Identities=15% Similarity=-0.027 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcc---hHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004644 623 NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSC---YALLSNMHAEAGRWDEVEKVRVSMEGS 687 (740)
Q Consensus 623 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~ 687 (740)
+...|..+..+|...|++++|+..++++++++|+++.+ |++++.+|...|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45579999999999999999999999999999999865 999999999999999999999988764
No 187
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.43 E-value=0.0063 Score=51.73 Aligned_cols=131 Identities=12% Similarity=0.078 Sum_probs=99.2
Q ss_pred CCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC-CCCCCH---HH
Q 004644 552 VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPNA---GI 626 (740)
Q Consensus 552 ~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~---~~ 626 (740)
..|...--..+..+....|+..+|...|++... |+-.+ ......+..+....+++.+|...++.+ ...|+. ..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 467666667788888899999999999998876 44443 666677788888889999998888775 222322 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHh
Q 004644 627 WGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685 (740)
Q Consensus 627 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 685 (740)
-..+...+...|.++.|+..++.++...|+ +..-...+..+.++|+.++|..-+..+-
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 344566788899999999999999999987 4566777889999999998876554443
No 188
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.42 E-value=0.088 Score=50.70 Aligned_cols=226 Identities=15% Similarity=0.119 Sum_probs=150.2
Q ss_pred CCCHHHHHHHHHHhh--hhhhhHHHHHHHHHHHHhCCCCChhHH--HHHHHHhhccCCHHHHHHHhcccC---CCCcchH
Q 004644 452 KADHSTLACALSACA--HLAALQLGRQIHHLAIKSGYVNDLFVG--NSLITMYAKCGRIQNAELLFKDAD---PVDVISW 524 (740)
Q Consensus 452 ~p~~~~~~~~l~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 524 (740)
..|...+..++.+-. -.|+.+.+++-|+.|... |..... ..|.---.+.|..+.|+.+-+... +.-.-.|
T Consensus 115 ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~ 191 (531)
T COG3898 115 SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAA 191 (531)
T ss_pred hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHH
Confidence 344444555554433 336677777776666541 221111 122222346788888888877654 3445578
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCC-CCCChH--HHHHHHHhhcc---cchHHHHHHHHHHhhhhcCCcCC-cchHHH
Q 004644 525 NSLIAGYAINGNATEAIKLFEEMVMEG-VAPDPV--TFIGVLSACSH---VGLVDGGLKLFECMTEVYAIEPL-VEHYAC 597 (740)
Q Consensus 525 ~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~--~~~~ll~a~~~---~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 597 (740)
.+.+...+..|+++.|+++.+.-.+.. +.|+.. .--.|+.+-.. ..+...|+..-.+.. .+.|+ +..-..
T Consensus 192 ~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~---KL~pdlvPaav~ 268 (531)
T COG3898 192 RATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN---KLAPDLVPAAVV 268 (531)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh---hcCCccchHHHH
Confidence 888999999999999999999876643 455543 22334433221 234566666655554 47788 444455
Q ss_pred HhhhhhccCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHhHccCCCCCcchHHHHHHHHhcCCch
Q 004644 598 MIDLLSRAGRLDEAFEMVKGM-KIKPNAGIWGTLLGACRMHQNIKLGR-IAVEKLSELEPQKTSCYALLSNMHAEAGRWD 675 (740)
Q Consensus 598 l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 675 (740)
-..+|.+.|++.++-.+++.+ +..|.+.+|..+. ..+.|+..... +-.+++-++.|++.+....++..-...|++.
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKAEPHPDIALLYV--RARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 668899999999999999887 6788888876663 45678776655 4566777899999999999999999999998
Q ss_pred HHHHHHHHHh
Q 004644 676 EVEKVRVSME 685 (740)
Q Consensus 676 ~a~~~~~~~~ 685 (740)
.|..--+...
T Consensus 347 ~ARa~Aeaa~ 356 (531)
T COG3898 347 AARAKAEAAA 356 (531)
T ss_pred HHHHHHHHHh
Confidence 8876555443
No 189
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.41 E-value=0.016 Score=59.14 Aligned_cols=121 Identities=14% Similarity=0.104 Sum_probs=80.3
Q ss_pred hhhCCHHHHHHHHhhCCCCchhHHHHHHHHHHhcCChhHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHhccc
Q 004644 306 VRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN 385 (740)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 385 (740)
...|-.+.+.++-.++......+...+...+.+...+.-|.++|.++.. ..++++.....+++++|..+-++..+
T Consensus 727 ~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD-----~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 727 GDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD-----LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc-----HHHHhhheeecccchHhHhhhhhCcc
Confidence 3444455555555555544555555556666666777777888877753 35567778888888888888888876
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhhCCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 004644 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450 (740)
Q Consensus 386 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 450 (740)
--+..|.....-++...++++|.+.|.+. |+..+|..+++++....
T Consensus 802 ~~~dVy~pyaqwLAE~DrFeEAqkAfhkA-------------------Gr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 802 FKDDVYMPYAQWLAENDRFEEAQKAFHKA-------------------GRQREAVQVLEQLTNNA 847 (1081)
T ss_pred ccccccchHHHHhhhhhhHHHHHHHHHHh-------------------cchHHHHHHHHHhhhhh
Confidence 44455556666677777777777766554 56677777777765443
No 190
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.38 E-value=0.17 Score=49.94 Aligned_cols=85 Identities=20% Similarity=0.203 Sum_probs=49.1
Q ss_pred HHHHHHHHHHCCCCCChH----HHHHHHHh--hcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHH
Q 004644 540 AIKLFEEMVMEGVAPDPV----TFIGVLSA--CSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFE 613 (740)
Q Consensus 540 A~~~~~~m~~~~~~p~~~----~~~~ll~a--~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 613 (740)
-+.+-+-+.+.|+.|-.+ .-+.+.+| ....|++.++.-+-..+.+ +.|++.+|..++-.+....+++||.+
T Consensus 440 LlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~ 516 (549)
T PF07079_consen 440 LLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWE 516 (549)
T ss_pred HHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 333333444456555332 22333332 3456777776665555543 66777777777777777777777777
Q ss_pred HHHhCCCCCCHHHHHH
Q 004644 614 MVKGMKIKPNAGIWGT 629 (740)
Q Consensus 614 ~~~~~~~~p~~~~~~~ 629 (740)
++.++| |+..+|++
T Consensus 517 ~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 517 YLQKLP--PNERMRDS 530 (549)
T ss_pred HHHhCC--CchhhHHH
Confidence 777765 45555544
No 191
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.37 E-value=0.00022 Score=46.08 Aligned_cols=42 Identities=17% Similarity=0.265 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHH
Q 004644 625 GIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSN 666 (740)
Q Consensus 625 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 666 (740)
.+|..+..++...|+++.|+..++++++.+|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367888899999999999999999999999999999888864
No 192
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.37 E-value=0.00085 Score=63.35 Aligned_cols=92 Identities=13% Similarity=0.082 Sum_probs=54.7
Q ss_pred HHHHhhhhhccCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCC---CcchHHHHH
Q 004644 595 YACMIDLLSRAGRLDEAFEMVKGM-KIKPNA----GIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK---TSCYALLSN 666 (740)
Q Consensus 595 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 666 (740)
|...+..+.+.|++++|...|+.. ...|+. ..+.-++..+...|+++.|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444444444556666666555444 122322 234445556666777777777777777766664 445556677
Q ss_pred HHHhcCCchHHHHHHHHHhh
Q 004644 667 MHAEAGRWDEVEKVRVSMEG 686 (740)
Q Consensus 667 ~~~~~g~~~~a~~~~~~~~~ 686 (740)
+|...|++++|.++++.+.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777776653
No 193
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.37 E-value=0.00017 Score=52.39 Aligned_cols=60 Identities=22% Similarity=0.272 Sum_probs=27.9
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHH
Q 004644 605 AGRLDEAFEMVKGM-KIKP-NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALL 664 (740)
Q Consensus 605 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 664 (740)
.|++++|+++++++ ...| +..++..+..+|...|++++|...+++++..+|+++..+..+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 44455555544443 2223 333444455555555555555555555555555554444433
No 194
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.32 E-value=0.0013 Score=51.69 Aligned_cols=60 Identities=22% Similarity=0.278 Sum_probs=35.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHhhcccchHHHHHHHHHHhhh
Q 004644 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD-PVTFIGVLSACSHVGLVDGGLKLFECMTE 584 (740)
Q Consensus 523 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 584 (740)
+|..++..+...|++++|+..++++.+. .|+ ...+..+...+...|++++|...|+...+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555666677777777777777777664 333 23444555555555666666666655543
No 195
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.29 E-value=0.00038 Score=40.96 Aligned_cols=31 Identities=35% Similarity=0.567 Sum_probs=24.9
Q ss_pred ecHHHHHHHHHcCCChHHHHHHHHHHHHCCC
Q 004644 421 VSWNALISGFLQNEFHLDALKIFVLMTQEGK 451 (740)
Q Consensus 421 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 451 (740)
++|+.++.+|.+.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888877763
No 196
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.27 E-value=0.22 Score=48.75 Aligned_cols=106 Identities=15% Similarity=0.294 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHhhhCCHHHH
Q 004644 235 SWVTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEA 314 (740)
Q Consensus 235 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 314 (740)
+.+..+..+...|+...|.++..+..-|+...|-..+.+++..++|++-..+... +..|.-|..++.+|...|+..+|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHH
Confidence 3444556667778888888888888778888888888888888888877766543 45677788888888888888888
Q ss_pred HHHHhhCCCCchhHHHHHHHHHHhcCChhHHHHH
Q 004644 315 RRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQI 348 (740)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 348 (740)
..++.++.. ..-+.+|.++|++.+|.+.
T Consensus 257 ~~yI~k~~~------~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 257 SKYIPKIPD------EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHhCCh------HHHHHHHHHCCCHHHHHHH
Confidence 887776422 3345566666666655544
No 197
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.21 E-value=0.00043 Score=50.46 Aligned_cols=64 Identities=22% Similarity=0.236 Sum_probs=50.3
Q ss_pred cchHHHHhhhhhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHhHccCC
Q 004644 592 VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPN-AGIWGTLLGACRMHQ-NIKLGRIAVEKLSELEP 655 (740)
Q Consensus 592 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 655 (740)
+..|..++..+.+.|++++|+..++.. ...|+ ...|..+..++...| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 346677788888888888888887554 44564 447888888888888 79999999999999988
No 198
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.21 E-value=0.0061 Score=51.84 Aligned_cols=110 Identities=21% Similarity=0.179 Sum_probs=93.1
Q ss_pred HHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCC
Q 004644 580 ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM---KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQ 656 (740)
Q Consensus 580 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 656 (740)
++..+.+.+.|++.+-..|...+.+.|+..||...+++. .+.-|......+.++....++...|...++++.+..|.
T Consensus 77 Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 77 REATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred HHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence 334444567788888888999999999999999999776 35568888889999999999999999999999999986
Q ss_pred C--CcchHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004644 657 K--TSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689 (740)
Q Consensus 657 ~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 689 (740)
. |.....++..|...|++.+|..-|+...+.-+
T Consensus 157 ~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp 191 (251)
T COG4700 157 FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP 191 (251)
T ss_pred cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence 4 77889999999999999999999887766543
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.19 E-value=0.0036 Score=50.76 Aligned_cols=87 Identities=15% Similarity=0.045 Sum_probs=60.8
Q ss_pred HHhhhhhccCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCC---CCcchHHHHHHH
Q 004644 597 CMIDLLSRAGRLDEAFEMVKGM---KIKPN--AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQ---KTSCYALLSNMH 668 (740)
Q Consensus 597 ~l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~ 668 (740)
.+..++-..|+.++|+.++++. ..... ...+-.+.+.++..|++++|..++++.+.-.|+ +......++.++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3455666677777777777554 11111 224566777788888888888888888888787 666677777888
Q ss_pred HhcCCchHHHHHHHH
Q 004644 669 AEAGRWDEVEKVRVS 683 (740)
Q Consensus 669 ~~~g~~~~a~~~~~~ 683 (740)
...|+++||.+.+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 888888888877644
No 200
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.15 E-value=0.0084 Score=57.92 Aligned_cols=134 Identities=13% Similarity=0.150 Sum_probs=94.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHh-hcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhh
Q 004644 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA-CSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601 (740)
Q Consensus 523 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 601 (740)
+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+.|+. +...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~--~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS--DPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT---HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHH
Confidence 57777888888888888888888887542 2233445444443 33356677799999988886543 35567888888
Q ss_pred hhccCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCc
Q 004644 602 LSRAGRLDEAFEMVKGM-KIKPNA----GIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTS 659 (740)
Q Consensus 602 ~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 659 (740)
+.+.|+.+.|..+|+.. ..-|.. .+|...+.-=..+|+.+....+.+++.+..|++..
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 88889999998888665 222333 37888888888899999999999999999888653
No 201
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.11 E-value=0.045 Score=55.97 Aligned_cols=45 Identities=18% Similarity=0.408 Sum_probs=25.5
Q ss_pred HHHHHHcCCChHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHh
Q 004644 114 MITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLD 164 (740)
Q Consensus 114 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 164 (740)
++..++-.|.+.+|-++|.+-+.. +.-+.+|.....+|.|.++..
T Consensus 638 lA~~~Ay~gKF~EAAklFk~~G~e------nRAlEmyTDlRMFD~aQE~~~ 682 (1081)
T KOG1538|consen 638 LADVFAYQGKFHEAAKLFKRSGHE------NRALEMYTDLRMFDYAQEFLG 682 (1081)
T ss_pred HHHHHHhhhhHHHHHHHHHHcCch------hhHHHHHHHHHHHHHHHHHhh
Confidence 445566667777777777766442 223445555555555555544
No 202
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.08 E-value=0.016 Score=54.44 Aligned_cols=55 Identities=16% Similarity=0.109 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHhccC--CCccc----HHHHHHHHHcCCChHHHHHHHhhC
Q 004644 80 WNSMIAGYLHNDKVKEARELFDKMFR--PDLFS----WALMITCYTRKGELEKARELFDLL 134 (740)
Q Consensus 80 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~ 134 (740)
+...+..+...|++++|+..|+.... |+... ...++.++.+.++++.|...++..
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~f 95 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRF 95 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 33444445555555555555555543 22211 123344555555555555555544
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.06 E-value=0.0046 Score=58.44 Aligned_cols=93 Identities=11% Similarity=0.063 Sum_probs=57.8
Q ss_pred cccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCH
Q 004644 567 SHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM----KIKP-NAGIWGTLLGACRMHQNI 640 (740)
Q Consensus 567 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~ 640 (740)
...|++++|+..|+.+.+.|+-.+- ...+..++.+|...|++++|...|+.+ |..| ....+..++..+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 3345566666666666554322221 235556777777777777777766555 2222 222455555667778888
Q ss_pred HHHHHHHHHhHccCCCCCc
Q 004644 641 KLGRIAVEKLSELEPQKTS 659 (740)
Q Consensus 641 ~~a~~~~~~~~~~~p~~~~ 659 (740)
+.|...++++++..|++..
T Consensus 234 ~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHHHCcCCHH
Confidence 8899999988888888753
No 204
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.05 E-value=0.021 Score=52.20 Aligned_cols=49 Identities=14% Similarity=0.055 Sum_probs=38.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhHccCCCCC---cchHHHHHHHHhcCCchHHHH
Q 004644 631 LGACRMHQNIKLGRIAVEKLSELEPQKT---SCYALLSNMHAEAGRWDEVEK 679 (740)
Q Consensus 631 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~ 679 (740)
..-|.+.|.+..|..-++.+++-.|+.+ .+...++..|.+.|..+.|..
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 3457789999999999999999999984 557888899999999885543
No 205
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.05 E-value=0.063 Score=52.89 Aligned_cols=161 Identities=17% Similarity=0.107 Sum_probs=105.7
Q ss_pred HHHHHhhccCCHHHHHHHhcccCCC-------CcchHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 004644 495 SLITMYAKCGRIQNAELLFKDADPV-------DVISWNSLIAGYAI---NGNATEAIKLFEEMVMEGVAPDPVTFIGVLS 564 (740)
Q Consensus 495 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 564 (740)
.++-.|....+++...++.+.+... ....-...+-++.+ .|+.++|++++..+....-.+++.|+..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444678888888888888877633 12222344556666 7899999999999766656777778877766
Q ss_pred hhc---------ccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHH----HHHHH---Hh-C---C-C--C
Q 004644 565 ACS---------HVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDE----AFEMV---KG-M---K-I--K 621 (740)
Q Consensus 565 a~~---------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----A~~~~---~~-~---~-~--~ 621 (740)
.|- .....++|+..|.+. |.++|+..+=-.++-++...|.-.+ ..++. .. + + . .
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 542 233578899988876 4566764333334444555554222 22222 11 1 1 2 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCC
Q 004644 622 PNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKT 658 (740)
Q Consensus 622 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 658 (740)
.+-..+.+++.++...||++.|.+++++++.+.|..-
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 3444567889999999999999999999999987653
No 206
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0028 Score=61.29 Aligned_cols=82 Identities=15% Similarity=0.065 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCcccEEEEcCEEE
Q 004644 626 IWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705 (740)
Q Consensus 626 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 705 (740)
++..|..+|.+.+++..|+....++++++|+|.-+.+.-|.+|...|.++.|...|+++.+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k------------------- 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK------------------- 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH-------------------
Confidence 4666777778889999999999999999999999999999999999999999999998873
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHHhhc
Q 004644 706 TFLSGDPKQCRTAEICNTLKTLAAQIRN 733 (740)
Q Consensus 706 ~f~~~~~~~~~~~~~~~~l~~l~~~~~~ 733 (740)
-.|....|..+|..|.+++++
T Consensus 320 -------~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 320 -------LEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred -------hCCCcHHHHHHHHHHHHHHHH
Confidence 336667888888888777654
No 207
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.02 E-value=0.019 Score=50.84 Aligned_cols=126 Identities=21% Similarity=0.235 Sum_probs=84.1
Q ss_pred CCCCHHHHHHHHHHhhh-----hhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccCCCCcchHH
Q 004644 451 KKADHSTLACALSACAH-----LAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWN 525 (740)
Q Consensus 451 ~~p~~~~~~~~l~~~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 525 (740)
-..+..+|..++..+.+ .|.++-....+..|.+.|+..|..+|+.|++.+-| |.+- +.+ .+.
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv----------p~n--~fQ 109 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV----------PRN--FFQ 109 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc----------ccc--HHH
Confidence 34566667666666543 46777777778888899999999999999998876 3321 111 111
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchH-HHHHHHHHHhhhhcCCcCC
Q 004644 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV-DGGLKLFECMTEVYAIEPL 591 (740)
Q Consensus 526 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~-~~a~~~~~~~~~~~~~~p~ 591 (740)
++-.-| ..+-+-|++++++|...|+.||..|+..++..+.+.+.. .+.+++.-.|-+-.+++|-
T Consensus 110 ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpkfk~~nP~ 174 (228)
T PF06239_consen 110 AEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPKFKNINPW 174 (228)
T ss_pred HHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhccCCC
Confidence 111111 134566999999999999999999999999999877653 3344444444443344443
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.95 E-value=0.0016 Score=47.98 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=51.8
Q ss_pred hhhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHH
Q 004644 600 DLLSRAGRLDEAFEMVKGM-KIKP-NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALL 664 (740)
Q Consensus 600 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 664 (740)
..|.+.+++++|.+.++.+ ...| +...|......+...|+++.|...++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4677889999999988776 4556 444677788888899999999999999999999887655443
No 209
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.78 E-value=0.61 Score=45.71 Aligned_cols=102 Identities=14% Similarity=0.177 Sum_probs=67.5
Q ss_pred HHHHHhcCChhHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 004644 333 ISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFE 412 (740)
Q Consensus 333 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 412 (740)
+..+...|+...|.++-.+..-++...|-..+.+++..+++++-..+... +.+|.-|...+..|.+.|+..+|..+..
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~~yI~ 261 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEASKYIP 261 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHHHHHH
Confidence 44455666667777777766666777777777777777777766554433 4566667777777777777777777766
Q ss_pred hhCCCCCeecHHHHHHHHHcCCChHHHHHHH
Q 004644 413 EMGKRRNTVSWNALISGFLQNEFHLDALKIF 443 (740)
Q Consensus 413 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 443 (740)
.+ .+..-+..|.+.|++.+|.+.-
T Consensus 262 k~-------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 262 KI-------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred hC-------ChHHHHHHHHHCCCHHHHHHHH
Confidence 63 2345566667777777766553
No 210
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.76 E-value=0.03 Score=56.35 Aligned_cols=121 Identities=18% Similarity=0.106 Sum_probs=93.3
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHh--CCCCChhHHHHHHHHhhccCCHHHHHHHhcccC----CCCcc
Q 004644 449 EGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS--GYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD----PVDVI 522 (740)
Q Consensus 449 ~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~ 522 (740)
.+.+.+...+..++..+.+..+++.+..++...... ....-..+..+++..|.+.|..+.+..+++.=. =||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 345667778888888888888888888887777665 333345556688888888888888888887543 47888
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhccc
Q 004644 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV 569 (740)
Q Consensus 523 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~ 569 (740)
++|.++..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 89999999999999999999988888877777777776666666554
No 211
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.74 E-value=0.034 Score=53.75 Aligned_cols=126 Identities=14% Similarity=0.084 Sum_probs=66.0
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhc-cCCHHHHHHHhcccC---CCCcchHHHHHHHHH
Q 004644 457 TLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK-CGRIQNAELLFKDAD---PVDVISWNSLIAGYA 532 (740)
Q Consensus 457 ~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 532 (740)
+|...+..+-+.+.++.++.++..+.+.+ ..+..+|...+.+-.. .++.+.|.++|+... +.+...|...+..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 34445555555556666666666665322 2223333333344333 344444666666544 555666666666666
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCh---HHHHHHHHhhcccchHHHHHHHHHHhhh
Q 004644 533 INGNATEAIKLFEEMVMEGVAPDP---VTFIGVLSACSHVGLVDGGLKLFECMTE 584 (740)
Q Consensus 533 ~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 584 (740)
..|+.+.|..+|++.+.. +.++. ..|...+.--...|+.+...++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666654 22222 2555555555566666666666666655
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.062 Score=48.70 Aligned_cols=135 Identities=11% Similarity=0.081 Sum_probs=88.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhC-----CCCChhHHHHHHH
Q 004644 424 NALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSG-----YVNDLFVGNSLIT 498 (740)
Q Consensus 424 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~l~~ 498 (740)
+.++..+...|.+.-.+..+.+.++...+-+......+.+...+.|+.+.+...++...+.. ......+......
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 44555555566666666777776665555566666666677777777777777777666542 2233333444445
Q ss_pred HhhccCCHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHH
Q 004644 499 MYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI 560 (740)
Q Consensus 499 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 560 (740)
.|.-++++..|...|.++. +.++...|.-+-+..-.|+..+|++..+.|... .|.+.+-.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 5667778888888887766 556666776666666778888899998888874 55544433
No 213
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.68 E-value=0.98 Score=46.72 Aligned_cols=182 Identities=17% Similarity=0.163 Sum_probs=127.7
Q ss_pred ChhHHHHHHHHhhccCCHHHHHHHhcccCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHh
Q 004644 489 DLFVGNSLITMYAKCGRIQNAELLFKDADPV---DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565 (740)
Q Consensus 489 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a 565 (740)
+...|...++.-.+.|+.+...-+|+++.-| -...|-..+.-....|+.+-|-.++....+--++-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4667788888888999999999999887632 2345666666666668888888887776664333333332222233
Q ss_pred hcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHH
Q 004644 566 CSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAF---EMVKGM-KIKPNAGIWGTLLG-----ACR 635 (740)
Q Consensus 566 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~~-----~~~ 635 (740)
+-..|+.+.|..+++.+.+. . |+ +..-..-+....|.|..+.+. +++... +.+.+..+...+.- -+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 66789999999999999986 3 76 444445566778889998887 555443 23333333222221 244
Q ss_pred hcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCC
Q 004644 636 MHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGR 673 (740)
Q Consensus 636 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 673 (740)
..++.+.|..++.++.+..|++...|..+.++....+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 57899999999999999999999999999888777663
No 214
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.088 Score=47.77 Aligned_cols=138 Identities=12% Similarity=0.057 Sum_probs=99.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhc----CCcCCcchHHHH
Q 004644 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVY----AIEPLVEHYACM 598 (740)
Q Consensus 523 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~~~~~~~l 598 (740)
+-+.++..+.-+|.+.-.+.++++.++...+-++.....+.+.-.+.|+.+.|..+|+...+.- ++.-........
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3466777777788898999999999997655667788888888999999999999999766532 222223333444
Q ss_pred hhhhhccCChHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcc
Q 004644 599 IDLLSRAGRLDEAFEMVKGMKI-KP-NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSC 660 (740)
Q Consensus 599 ~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 660 (740)
...+.-++++.+|...+.+.+. +| |+...++-.-...--|+...|++..+.+.+..|.....
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence 5566777888888888887753 33 33344444334445689999999999999999986543
No 215
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.0097 Score=55.52 Aligned_cols=93 Identities=14% Similarity=0.149 Sum_probs=54.7
Q ss_pred CcccHHHHHHHHHcCCChHHHHHHHhhC--CCCCChhhHHHHHHHHHhcC---ChhhHHHHHhcCCC---CCcccHHHHH
Q 004644 107 DLFSWALMITCYTRKGELEKARELFDLL--PNKEDTACWNAMVAGYAKIG---NYNEAKKLLDAMPS---KNIVSWNSML 178 (740)
Q Consensus 107 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~l~ 178 (740)
|...|..|..+|...|++..|..-|... ..++++..+..++.++..+. .-.++..+|+++.. .|+.+...+.
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA 234 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 4556666666666666666666666665 34455555555555544332 23456666666543 2334555556
Q ss_pred HHHHhCCChHHHHHHHHhccc
Q 004644 179 SGYTKNGEMHLASKFFEAMEE 199 (740)
Q Consensus 179 ~~~~~~g~~~~A~~~~~~~~~ 199 (740)
..+.+.|++.+|...++.|.+
T Consensus 235 ~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 235 FAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHcccHHHHHHHHHHHHh
Confidence 666667777777777766664
No 216
>PRK11906 transcriptional regulator; Provisional
Probab=96.66 E-value=0.015 Score=58.01 Aligned_cols=58 Identities=14% Similarity=0.069 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHH
Q 004644 626 IWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVS 683 (740)
Q Consensus 626 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 683 (740)
....++.+....|+++.|...+++++.++|+.+.+|...|++..-.|+.++|.+..++
T Consensus 340 a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 340 ILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3333333333344455555555555555555555555555555555555555554444
No 217
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.87 Score=48.18 Aligned_cols=107 Identities=17% Similarity=0.274 Sum_probs=57.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHhhhCCHHHHHHHHhhCCCCchhHHHHHHHHHHhcCChhHHHH
Q 004644 268 NAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQ 347 (740)
Q Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 347 (740)
+.-+.-+...|+-.+|.++-.+..-||...|-.-+.++...+++++-+++-..... +.-+...+..+.+.|+.++|..
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks--PIGy~PFVe~c~~~~n~~EA~K 765 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS--PIGYLPFVEACLKQGNKDEAKK 765 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC--CCCchhHHHHHHhcccHHHHhh
Confidence 33344444555555555555555555555555555555555555555555444431 2222334455555566666655
Q ss_pred HHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 004644 348 IFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFR 381 (740)
Q Consensus 348 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 381 (740)
++-++... .-.+.+|.+.|++.+|.++--
T Consensus 766 Yiprv~~l-----~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 766 YIPRVGGL-----QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hhhccCCh-----HHHHHHHHHhccHHHHHHHHH
Confidence 55554321 145667777777777776654
No 218
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.59 E-value=0.68 Score=43.67 Aligned_cols=195 Identities=24% Similarity=0.205 Sum_probs=134.7
Q ss_pred hhHHHHHHHHhhccCCHHHHHHHhcccC-----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 004644 490 LFVGNSLITMYAKCGRIQNAELLFKDAD-----PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLS 564 (740)
Q Consensus 490 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 564 (740)
..........+...+.+..+...+.... +.....+......+...+++..+++.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 4555666677777788877777766543 44455666777777778888888888888877433331 22222222
Q ss_pred -hhcccchHHHHHHHHHHhhhhcCCcC----CcchHHHHhhhhhccCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh
Q 004644 565 -ACSHVGLVDGGLKLFECMTEVYAIEP----LVEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPN--AGIWGTLLGACRM 636 (740)
Q Consensus 565 -a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~ 636 (740)
++...|+.+.+...|..... ..| ....+......+...++.++|...+... ...|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67788888999888888743 333 2333444444466778888888887665 33343 4567777778888
Q ss_pred cCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004644 637 HQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688 (740)
Q Consensus 637 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 688 (740)
.++.+.+...+..++...|.....+..++..+...|.++++...+.......
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888999999999999988866677777778777777888888877765443
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.59 E-value=0.0022 Score=48.01 Aligned_cols=60 Identities=12% Similarity=0.024 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHcc---CC-C---CCcchHHHHHHHHhcCCchHHHHHHHHHh
Q 004644 626 IWGTLLGACRMHQNIKLGRIAVEKLSEL---EP-Q---KTSCYALLSNMHAEAGRWDEVEKVRVSME 685 (740)
Q Consensus 626 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p-~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 685 (740)
+++.+...+...|++++|+..+++++++ .+ + -..++..+|.+|...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5677777777888888888888887754 12 2 24567888889999999999988887654
No 220
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.56 E-value=0.4 Score=44.07 Aligned_cols=165 Identities=20% Similarity=0.144 Sum_probs=106.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CC-ChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhh
Q 004644 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGV-AP-DPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMID 600 (740)
Q Consensus 523 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 600 (740)
.|..-+..-.+.|++++|.+.|+.+..... .| ...+...++.++.+.+++++|+..+++..+.|+-.|+++ |...+.
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Ylk 114 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLK 114 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHH
Confidence 344445556677888888888888876421 11 233556666777788888888888888887777777743 222222
Q ss_pred hhhcc-------CChH---HH----HHHHHhCCC---CCCHHHH------------HHHHHHHHhcCCHHHHHHHHHHhH
Q 004644 601 LLSRA-------GRLD---EA----FEMVKGMKI---KPNAGIW------------GTLLGACRMHQNIKLGRIAVEKLS 651 (740)
Q Consensus 601 ~~~~~-------g~~~---~A----~~~~~~~~~---~p~~~~~------------~~l~~~~~~~g~~~~a~~~~~~~~ 651 (740)
++..- .+.. +| .++++..|. .||...- .++..-|.+.|.+..|..-++.++
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~ 194 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVL 194 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 22211 1111 22 233344442 2344321 233455788999999999999999
Q ss_pred ccCCCCC---cchHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004644 652 ELEPQKT---SCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688 (740)
Q Consensus 652 ~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 688 (740)
+-.|+.+ .++..+.++|...|..++|.+..+-+...-
T Consensus 195 e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~ 234 (254)
T COG4105 195 ENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANY 234 (254)
T ss_pred hccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Confidence 9887765 456778889999999999999988776433
No 221
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.55 E-value=0.026 Score=48.51 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=71.2
Q ss_pred hcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004644 566 CSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRI 645 (740)
Q Consensus 566 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 645 (740)
....|+.+.+...+..+...+.-.+-...-. ........+.++..- ......++..+...|+++.|..
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~--------~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~a~~ 83 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD--------EEWVEPERERLRELY----LDALERLAEALLEAGDYEEALR 83 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT--------STTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc--------cHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHHHHH
Confidence 3456677777777777776543222111000 122222333333321 1245566677888999999999
Q ss_pred HHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhh
Q 004644 646 AVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEG 686 (740)
Q Consensus 646 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 686 (740)
.+++++..+|-+-..|..+..+|...|+..+|.++++.+..
T Consensus 84 ~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 84 LLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888753
No 222
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.55 E-value=0.069 Score=46.94 Aligned_cols=176 Identities=16% Similarity=0.087 Sum_probs=108.2
Q ss_pred ccCCHHHHHHHhccc---CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHhhcccchHHHHHH
Q 004644 502 KCGRIQNAELLFKDA---DPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD-PVTFIGVLSACSHVGLVDGGLK 577 (740)
Q Consensus 502 ~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~a~~~~g~~~~a~~ 577 (740)
..|-..-|+--|.+. .|.-+.+||-++--+...|+++.|.+.|+...+. .|. ..++..-.-++...|++.-|.+
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHH
Confidence 345555555555543 2556678888888889999999999999999884 443 3344444456677888888887
Q ss_pred HHHHhhhhcCCcCCcchHHHHh-hhhhccCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCC
Q 004644 578 LFECMTEVYAIEPLVEHYACMI-DLLSRAGRLDEAFEMV-KGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEP 655 (740)
Q Consensus 578 ~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 655 (740)
-|...- .-.|+- .|..+- -+-.+.-+..+|..-+ +... ..|...|...+-.+.. |.+.. +..++++.+-..
T Consensus 155 d~~~fY---Q~D~~D-PfR~LWLYl~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS~-e~l~~~~~a~a~ 227 (297)
T COG4785 155 DLLAFY---QDDPND-PFRSLWLYLNEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKISE-ETLMERLKADAT 227 (297)
T ss_pred HHHHHH---hcCCCC-hHHHHHHHHHHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhccH-HHHHHHHHhhcc
Confidence 666553 334442 233332 2223344667776544 4332 3455556555444422 22211 233444444333
Q ss_pred CC-------CcchHHHHHHHHhcCCchHHHHHHHHHhh
Q 004644 656 QK-------TSCYALLSNMHAEAGRWDEVEKVRVSMEG 686 (740)
Q Consensus 656 ~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 686 (740)
++ .++|..|+.-|...|..++|..+|+....
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 33 56799999999999999999999996653
No 223
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.047 Score=48.94 Aligned_cols=161 Identities=15% Similarity=0.149 Sum_probs=81.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHhccC--CCcccHHHHHHHHHcCCChHHHHHHHhhCCC-CCChhhHHHHHHHHHhcCCh
Q 004644 80 WNSMIAGYLHNDKVKEARELFDKMFR--PDLFSWALMITCYTRKGELEKARELFDLLPN-KEDTACWNAMVAGYAKIGNY 156 (740)
Q Consensus 80 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 156 (740)
|..-..+|....++++|...+.++.+ .+..++..-. ..++.|.-+...+.. +.-+..+..-..+|..+|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAA------KayEqaamLake~~klsEvvdl~eKAs~lY~E~Gsp 107 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAA------KAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSP 107 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHH------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCc
Confidence 44556667777788888877777653 1222222122 223344444444421 22233445556778888888
Q ss_pred hhHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHhccc---CC------cchHHHHHHHHhcCCChHHHHHHhcc
Q 004644 157 NEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE---RD------VVSWNLMLDGYVELDDLDSAWKFFQK 227 (740)
Q Consensus 157 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~------~~~~~~l~~~~~~~~~~~~a~~~~~~ 227 (740)
+-|-..+++.-+ ..++-++++|+++|.+... .+ ...+....+.+.+...+++|-..+.+
T Consensus 108 dtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 108 DTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred chHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 877777665321 2344567777777776642 11 11223334455555555555444433
Q ss_pred cC---------CCchhHHHHHHHHHHhcCChHHHHHHhcc
Q 004644 228 IP---------EQNVVSWVTMLSGYARNGRMLEARRLFDQ 258 (740)
Q Consensus 228 ~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 258 (740)
-. +..-..+.+.+-.|....++..|.+.++.
T Consensus 176 e~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 176 EGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred hhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 22 11112344444444555556666666555
No 224
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.53 E-value=0.014 Score=46.41 Aligned_cols=91 Identities=19% Similarity=0.143 Sum_probs=74.1
Q ss_pred hhhhhccCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCC----cchHHHHHHHHhcC
Q 004644 599 IDLLSRAGRLDEAFEMVKGM-KIK-PNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKT----SCYALLSNMHAEAG 672 (740)
Q Consensus 599 ~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g 672 (740)
+-++...|+++.|++.|.+. ..- .+.+.|+.-..+++.+|+.+.|..-+++++++.-+.. .+|+.-+.+|-..|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34577889999999988554 333 3677899999999999999999999999999875543 35888889999999
Q ss_pred CchHHHHHHHHHhhCCC
Q 004644 673 RWDEVEKVRVSMEGSGA 689 (740)
Q Consensus 673 ~~~~a~~~~~~~~~~~~ 689 (740)
+-|.|..-|+...+.|-
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 99999999998877664
No 225
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.50 E-value=0.024 Score=44.20 Aligned_cols=83 Identities=14% Similarity=0.230 Sum_probs=50.8
Q ss_pred HHhhhhhhhHHHHHHHHHHHHhCC-CCChhHHHHHHHHhhccCCHHHHHHHhcccCCCCcchHHHHHHHHHhcCChHHHH
Q 004644 463 SACAHLAALQLGRQIHHLAIKSGY-VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAI 541 (740)
Q Consensus 463 ~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 541 (740)
..|...+++...-.+++.+.+.|+ .|++.+|+.++....+..- |. ..-.++.-+.+
T Consensus 33 ~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~l--------------D~---------~~ie~kl~~LL 89 (120)
T PF08579_consen 33 NSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKREL--------------DS---------EDIENKLTNLL 89 (120)
T ss_pred HHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccc--------------cc---------hhHHHHHHHHH
Confidence 334444555555555555555555 5555556555544332210 00 11223455788
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHhhcc
Q 004644 542 KLFEEMVMEGVAPDPVTFIGVLSACSH 568 (740)
Q Consensus 542 ~~~~~m~~~~~~p~~~~~~~ll~a~~~ 568 (740)
.+|+.|+..+++|+..||+.++....+
T Consensus 90 tvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 90 TVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 999999999999999999999876543
No 226
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.49 E-value=1.3 Score=45.86 Aligned_cols=176 Identities=11% Similarity=-0.006 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhhCCC--CCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 004644 388 IVTWNTMIAGYAQIRQMDDAVKIFEEMGKR--RNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465 (740)
Q Consensus 388 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~ 465 (740)
..+|...+.--...|+.+...-.|++...+ .=...|-..+.-....|+.+-|-.++....+-..+-...+-..-..-+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 456666666666677777777777766322 122234444444444466666665555544443333333322222334
Q ss_pred hhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHH---HHhcccCC--CCcchHHHHHH-----HHHhcC
Q 004644 466 AHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE---LLFKDADP--VDVISWNSLIA-----GYAING 535 (740)
Q Consensus 466 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~--~~~~~~~~l~~-----~~~~~g 535 (740)
...|+...|+.+++.+...- +.-+.+-.--+.+..+.|..+.+. +++....+ .+....+.+.- .+...+
T Consensus 377 e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~ 455 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRE 455 (577)
T ss_pred HhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhc
Confidence 45667777777777766543 222333333445556666666665 33333321 12211221111 123346
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHh
Q 004644 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565 (740)
Q Consensus 536 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a 565 (740)
+.+.|..++.++.+. ++++...|..++.-
T Consensus 456 d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~ 484 (577)
T KOG1258|consen 456 DADLARIILLEANDI-LPDCKVLYLELIRF 484 (577)
T ss_pred CHHHHHHHHHHhhhc-CCccHHHHHHHHHH
Confidence 677777777777764 34455555555543
No 227
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.43 E-value=1.6 Score=46.29 Aligned_cols=101 Identities=20% Similarity=0.203 Sum_probs=55.6
Q ss_pred HhhccCCHHHHHHHhcccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHH
Q 004644 499 MYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578 (740)
Q Consensus 499 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~ 578 (740)
-+..-|+..+|.++-.+..-||-..|---+.+++..+++++-.++-+.+. + +.-|.-...+|.+.|+.++|.++
T Consensus 693 ~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk-----s-PIGy~PFVe~c~~~~n~~EA~KY 766 (829)
T KOG2280|consen 693 TLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK-----S-PIGYLPFVEACLKQGNKDEAKKY 766 (829)
T ss_pred HHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC-----C-CCCchhHHHHHHhcccHHHHhhh
Confidence 34445666666666666666666666666666666666655444433322 1 23344455566666666666666
Q ss_pred HHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHH
Q 004644 579 FECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMV 615 (740)
Q Consensus 579 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 615 (740)
+-+... +...+.+|.+.|++.+|.+..
T Consensus 767 iprv~~----------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 767 IPRVGG----------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hhccCC----------hHHHHHHHHHhccHHHHHHHH
Confidence 643311 114556666666666665544
No 228
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.40 E-value=0.047 Score=45.21 Aligned_cols=89 Identities=11% Similarity=0.048 Sum_probs=58.7
Q ss_pred HhhhhhccCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcc---hHHHHHHHH
Q 004644 598 MIDLLSRAGRLDEAFEMVKGM----KIKP-NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSC---YALLSNMHA 669 (740)
Q Consensus 598 l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~ 669 (740)
-+....+.|++++|.+.++.+ |..| ..-.-..|+-++...|+++.|...+++.++++|.++.+ +...|-++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 344455678888888777666 2333 22234556667888899999999999999998888643 555555566
Q ss_pred hcCC---------------chHHHHHHHHHhh
Q 004644 670 EAGR---------------WDEVEKVRVSMEG 686 (740)
Q Consensus 670 ~~g~---------------~~~a~~~~~~~~~ 686 (740)
.+.. ..+|..-|+.+.+
T Consensus 96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred HHhhhHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 5554 5566666665543
No 229
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.38 E-value=0.039 Score=55.61 Aligned_cols=113 Identities=17% Similarity=0.232 Sum_probs=84.1
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHhccc------CCHHHHHHHHHHHHccCCHHHHHHHHHhh---CCCCCeecHHHH
Q 004644 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMVN------KDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNAL 426 (740)
Q Consensus 356 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~l 426 (740)
+......+++......+.+++..++-+... .-+.|..+++..|.+.|..+.++.++..= |.-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 444555666666666677777777766643 12345668888888888888888888763 667888888888
Q ss_pred HHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhh
Q 004644 427 ISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468 (740)
Q Consensus 427 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~ 468 (740)
++.+.+.|++..|.++...|...+...+..|....+.+|.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888887777777777777666554
No 230
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.36 E-value=0.24 Score=45.29 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=21.6
Q ss_pred hhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHH
Q 004644 565 ACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDE 610 (740)
Q Consensus 565 a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 610 (740)
-+.+.|.+..|...++.+++.|+-.|. .+....++.+|.+.|..+.
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 344455555555555555554433333 3344455555555555553
No 231
>PRK15331 chaperone protein SicA; Provisional
Probab=96.27 E-value=0.012 Score=49.80 Aligned_cols=88 Identities=11% Similarity=0.044 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHhccC---CCcccHHHHHHHHHcCCChHHHHHHHhhC--CCCCChhhHHHHHHHHHhcC
Q 004644 80 WNSMIAGYLHNDKVKEARELFDKMFR---PDLFSWALMITCYTRKGELEKARELFDLL--PNKEDTACWNAMVAGYAKIG 154 (740)
Q Consensus 80 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~g 154 (740)
....+..+...|++++|..+|.-..- -|+..+..|+.++-..+++++|...|... ....|+......+..|...|
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 34455555666666666666665432 23444555666666666666666666654 33445555566666666666
Q ss_pred ChhhHHHHHhcCC
Q 004644 155 NYNEAKKLLDAMP 167 (740)
Q Consensus 155 ~~~~A~~~~~~~~ 167 (740)
+.+.|+..|+...
T Consensus 120 ~~~~A~~~f~~a~ 132 (165)
T PRK15331 120 KAAKARQCFELVN 132 (165)
T ss_pred CHHHHHHHHHHHH
Confidence 6666666666544
No 232
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.27 E-value=0.0023 Score=47.97 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=37.5
Q ss_pred chHHHHhhhhhccCChHHHHHHHHhCC-----CC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHcc
Q 004644 593 EHYACMIDLLSRAGRLDEAFEMVKGMK-----IK---PN-AGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653 (740)
Q Consensus 593 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 653 (740)
.+|+.++..|.+.|++++|++.+++.- .. |+ ..++..+...+...|+++.|+..+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345566666666666666666554430 11 22 235677777778888888888888887764
No 233
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.21 E-value=0.085 Score=41.25 Aligned_cols=77 Identities=12% Similarity=-0.023 Sum_probs=53.7
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHhhhhh--------hhHHHHHHHHHHHHhCCCCChhHHHHH
Q 004644 426 LISGFLQNEFHLDALKIFVLMTQEGK-KADHSTLACALSACAHLA--------ALQLGRQIHHLAIKSGYVNDLFVGNSL 496 (740)
Q Consensus 426 li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~~l~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~~l 496 (740)
.|..+...+++...-.+|+.+.+.|+ .|+..+|..++.+.++.. .+-....+++.++..++.|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 45555666777788888888888888 788888888887765432 233445667777777777777777777
Q ss_pred HHHhhc
Q 004644 497 ITMYAK 502 (740)
Q Consensus 497 ~~~~~~ 502 (740)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 765543
No 234
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.10 E-value=0.028 Score=51.87 Aligned_cols=92 Identities=13% Similarity=0.097 Sum_probs=41.2
Q ss_pred cccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCH
Q 004644 567 SHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM----KIKPNA-GIWGTLLGACRMHQNI 640 (740)
Q Consensus 567 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~ 640 (740)
..+|++..|...|..-++.|.-.+- ...+-.|+.++...|++++|...|..+ |..|-. ....-|..+....|+.
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 3445555555555555554432222 334445555555555555554444222 222211 2233333333444555
Q ss_pred HHHHHHHHHhHccCCCCC
Q 004644 641 KLGRIAVEKLSELEPQKT 658 (740)
Q Consensus 641 ~~a~~~~~~~~~~~p~~~ 658 (740)
+.|...++++++-.|+.+
T Consensus 232 d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 232 DEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHHHHHHCCCCH
Confidence 555555555555555443
No 235
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.08 E-value=2.4 Score=45.37 Aligned_cols=101 Identities=13% Similarity=0.181 Sum_probs=70.5
Q ss_pred HHHHHHHccCChhHHHHHHhhccCCCc-----cchHHHHHHHHcCCChhHHHHHHhhCCCCCcchHHHHHHHHhcCCChH
Q 004644 20 KKITQLGKSGRVEEAIKIFSQMSQKNT-----VTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVK 94 (740)
Q Consensus 20 ~~~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 94 (740)
--+.++.+.+.+++|..+.+.....-+ ..+..++.-+.-.|++++|-...-.|...+..-|..-+..+...+...
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 348899999999999999887553222 355667777788899999999888888878777877777777766655
Q ss_pred HHHHHHHhccC-CCcccHHHHHHHHHc
Q 004644 95 EARELFDKMFR-PDLFSWALMITCYTR 120 (740)
Q Consensus 95 ~A~~~~~~~~~-~~~~~~~~l~~~~~~ 120 (740)
.-..+.-.... -++..|..++..+..
T Consensus 441 ~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 441 DIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hhhccCCCCCcccCchHHHHHHHHHHH
Confidence 44433322211 245567777766665
No 236
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.033 Score=54.15 Aligned_cols=139 Identities=17% Similarity=0.056 Sum_probs=97.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccC
Q 004644 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAG 606 (740)
Q Consensus 527 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 606 (740)
-...|.+.|++..|...|++.+.. -+ +...-+.++...... .....+..++-.+.+.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLK 271 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhh
Confidence 355677778888888888776652 11 011111122111111 11235677888999999
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHH-HHHHHH
Q 004644 607 RLDEAFEMVKGM-KIKP-NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEV-EKVRVS 683 (740)
Q Consensus 607 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~ 683 (740)
++.+|++..+.. ..+| |.-...--..+|...|+++.|+..++++++++|+|-.+..-|..+-.+..++.+. .++|..
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988664 5555 4446767778899999999999999999999999999888888887776666655 678888
Q ss_pred HhhC
Q 004644 684 MEGS 687 (740)
Q Consensus 684 ~~~~ 687 (740)
|-..
T Consensus 352 mF~k 355 (397)
T KOG0543|consen 352 MFAK 355 (397)
T ss_pred Hhhc
Confidence 8543
No 237
>PRK11906 transcriptional regulator; Provisional
Probab=96.04 E-value=0.29 Score=49.23 Aligned_cols=157 Identities=12% Similarity=0.123 Sum_probs=105.2
Q ss_pred chH--HHHHHHHHhc--C---ChHHHHHHHHHHHH-CCCCCChH-HHHHHHHhhc---------ccchHHHHHHHHHHhh
Q 004644 522 ISW--NSLIAGYAIN--G---NATEAIKLFEEMVM-EGVAPDPV-TFIGVLSACS---------HVGLVDGGLKLFECMT 583 (740)
Q Consensus 522 ~~~--~~l~~~~~~~--g---~~~~A~~~~~~m~~-~~~~p~~~-~~~~ll~a~~---------~~g~~~~a~~~~~~~~ 583 (740)
..| ..++.+.... + ..+.|+.+|.+... ....|+.. .|..+..++. ......+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 556 5555444331 2 34678889999882 22567644 3333332221 1345566777777766
Q ss_pred hhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcc
Q 004644 584 EVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPNAG-IWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSC 660 (740)
Q Consensus 584 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 660 (740)
+ +.|+ +.....++.++.-.|+++.|...|++. ...||.. +|....+.+...|+.++|...++++++++|....+
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 5 4555 566667777778888899999999776 4677665 67777778888999999999999999999998665
Q ss_pred hHHHHH--HHHhcCCchHHHHHHH
Q 004644 661 YALLSN--MHAEAGRWDEVEKVRV 682 (740)
Q Consensus 661 ~~~l~~--~~~~~g~~~~a~~~~~ 682 (740)
-..--+ +|.. ...++|.+++-
T Consensus 409 ~~~~~~~~~~~~-~~~~~~~~~~~ 431 (458)
T PRK11906 409 VVIKECVDMYVP-NPLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHcC-CchhhhHHHHh
Confidence 444333 3444 44577777664
No 238
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.02 E-value=0.088 Score=43.62 Aligned_cols=119 Identities=15% Similarity=0.113 Sum_probs=70.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---hHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHh
Q 004644 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD---PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMI 599 (740)
Q Consensus 523 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 599 (740)
.+..-+....+.|++++|++.|+.+... .+.. ...-..++.++...|++++|+..+++.++.+.-.|++. |....
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~ 89 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYM 89 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHH
Confidence 3444455566778888888888887775 2222 23555677778888888888888888877655555532 33333
Q ss_pred hhhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCC
Q 004644 600 DLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKT 658 (740)
Q Consensus 600 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 658 (740)
.+++.-...+.++.-+- ..+. -.+....|...++++++..|++.
T Consensus 90 ~gL~~~~~~~~~~~~~~--~~dr-------------D~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFF--RSDR-------------DPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHhhhHHhhhc--cccc-------------CcHHHHHHHHHHHHHHHHCcCCh
Confidence 33332222221111111 1111 12335678889999999999975
No 239
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.02 E-value=0.012 Score=35.36 Aligned_cols=33 Identities=15% Similarity=0.070 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCC
Q 004644 625 GIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK 657 (740)
Q Consensus 625 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 657 (740)
.+|..++..+...|+++.|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467888888889999999999999999999874
No 240
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.94 E-value=0.019 Score=34.43 Aligned_cols=33 Identities=27% Similarity=0.196 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCC
Q 004644 625 GIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK 657 (740)
Q Consensus 625 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 657 (740)
..|..+...+...|+++.|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356777788888888888888888888888875
No 241
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.90 E-value=0.053 Score=50.06 Aligned_cols=92 Identities=17% Similarity=0.246 Sum_probs=56.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHH
Q 004644 524 WNSLIAGYAINGNATEAIKLFEEMVMEG----VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACM 598 (740)
Q Consensus 524 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 598 (740)
|+.-+ .+.+.|++..|...|...++.. ..|| .+-.|..++...|++++|..+|..+.+.++-.|. ++.+-.+
T Consensus 145 Y~~A~-~~~ksgdy~~A~~~F~~fi~~YP~s~~~~n--A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAAL-DLYKSGDYAEAEQAFQAFIKKYPNSTYTPN--AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCcccch--hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 44433 3344566777777777766642 1122 2334556667777777777777777776666666 5666667
Q ss_pred hhhhhccCChHHHHHHHHhC
Q 004644 599 IDLLSRAGRLDEAFEMVKGM 618 (740)
Q Consensus 599 ~~~~~~~g~~~~A~~~~~~~ 618 (740)
+....+.|+.++|...++++
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 77777777777776666554
No 242
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.87 E-value=0.073 Score=52.43 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=18.5
Q ss_pred HHHHHHHhCCChHHHHHHHHhcccCCcchH
Q 004644 176 SMLSGYTKNGEMHLASKFFEAMEERDVVSW 205 (740)
Q Consensus 176 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 205 (740)
+++.+..-.|++++|.+.+++|.+.++..|
T Consensus 310 Tl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 310 TLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 455566666777777777777665444444
No 243
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.87 E-value=0.15 Score=44.94 Aligned_cols=152 Identities=16% Similarity=0.195 Sum_probs=88.9
Q ss_pred cchHHHHHHHHhcCCChHHHHHHHHhccCCCcc-cHHH--HHHHHHcCCChHHHHHHHhhC--CCCCCh--hhHHHHHHH
Q 004644 77 LVSWNSMIAGYLHNDKVKEARELFDKMFRPDLF-SWAL--MITCYTRKGELEKARELFDLL--PNKEDT--ACWNAMVAG 149 (740)
Q Consensus 77 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~--l~~~~~~~~~~~~a~~~~~~~--~~~~~~--~~~~~l~~~ 149 (740)
+..||.++-.+...|+++.|.+.|+..++-|+. .|.. -+-++.--|+++-|.+-+... .+|.|+ ..|..+..
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E- 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE- 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH-
Confidence 457888888888899999999999888875543 2322 223334458888887776655 333333 23322222
Q ss_pred HHhcCChhhHHHH-HhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHhccc----------CCcchHHHHHHHHhcCCCh
Q 004644 150 YAKIGNYNEAKKL-LDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE----------RDVVSWNLMLDGYVELDDL 218 (740)
Q Consensus 150 ~~~~g~~~~A~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~ 218 (740)
..-+..+|..- .++....+..-|...+..|.- |+.. ...+++++.. .=..|+..+++-+...|+.
T Consensus 178 --~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~ 253 (297)
T COG4785 178 --QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDL 253 (297)
T ss_pred --hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccH
Confidence 22344555443 444555555666665544432 2211 1122333221 1135778888888889999
Q ss_pred HHHHHHhcccCCCch
Q 004644 219 DSAWKFFQKIPEQNV 233 (740)
Q Consensus 219 ~~a~~~~~~~~~~~~ 233 (740)
++|..+|+-++..++
T Consensus 254 ~~A~~LfKLaiannV 268 (297)
T COG4785 254 DEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHhH
Confidence 999998888775544
No 244
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.16 Score=47.44 Aligned_cols=155 Identities=11% Similarity=0.084 Sum_probs=99.0
Q ss_pred HhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhCCCCCCHHHHHHHHH---HHHhcCC
Q 004644 564 SACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLG---ACRMHQN 639 (740)
Q Consensus 564 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~---~~~~~g~ 639 (740)
......|+..+|...|+..... .|. .+.-..++.+|...|+.+.|..++..+|.+-...-|..+.. ......+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 3456778888888888887763 333 56667888999999999999999999875544444444211 1111122
Q ss_pred HHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCcccEEEEcCE-EEEEecCCCCCCChH
Q 004644 640 IKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQ-IHTFLSGDPKQCRTA 718 (740)
Q Consensus 640 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~-~~~f~~~~~~~~~~~ 718 (740)
... ...+++-+.-+|+|...-..|+..|...|+.++|.+.+=.+..+...-..+ +.+.+ +.-|..-+..||.+.
T Consensus 219 ~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~----~~Rk~lle~f~~~g~~Dp~~~ 293 (304)
T COG3118 219 TPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDG----EARKTLLELFEAFGPADPLVL 293 (304)
T ss_pred CCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCc----HHHHHHHHHHHhcCCCCHHHH
Confidence 111 134556677899999999999999999999999998876665442211111 00011 122344445677777
Q ss_pred HHHHHHHH
Q 004644 719 EICNTLKT 726 (740)
Q Consensus 719 ~~~~~l~~ 726 (740)
.+..+|-.
T Consensus 294 ~~RRkL~s 301 (304)
T COG3118 294 AYRRKLYS 301 (304)
T ss_pred HHHHHHHH
Confidence 66666644
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.2 Score=46.76 Aligned_cols=116 Identities=15% Similarity=0.115 Sum_probs=61.7
Q ss_pred HHHHHcCCChhHHHHHHhhCCC---CCcchHHHHHHHHhcCCChHHHHHHHHhccCCC----cccHHHHHHHHHcCCChH
Q 004644 53 ISAYAKNGRVNDARKLFEQMPQ---RNLVSWNSMIAGYLHNDKVKEARELFDKMFRPD----LFSWALMITCYTRKGELE 125 (740)
Q Consensus 53 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~ 125 (740)
+......|++.+|..+|+.+.+ .+...-..++.+|...|+.+.|..++..+.... ......-+..+.+..+..
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3344556667777666666543 233445566666777777777777776664311 111112223333333333
Q ss_pred HHHHHHhhC-CCCCChhhHHHHHHHHHhcCChhhHHHHHhcCCC
Q 004644 126 KARELFDLL-PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPS 168 (740)
Q Consensus 126 ~a~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 168 (740)
+...+-..+ .+|.|......++..|...|+.++|.+.+-.+.+
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333333 3445666666677777777777777666655543
No 246
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.63 E-value=0.22 Score=49.89 Aligned_cols=65 Identities=11% Similarity=0.071 Sum_probs=39.9
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH----HHHHHHHhhcccchHHHHHHHHHHhhh
Q 004644 518 PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV----TFIGVLSACSHVGLVDGGLKLFECMTE 584 (740)
Q Consensus 518 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~a~~~~g~~~~a~~~~~~~~~ 584 (740)
|.+...|+.+..+|...|++++|+..|++.++ +.|+.. +|..+..+|.+.|+.++|+..++++.+
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445566666666666666666666666665 345532 356666666666666666666666655
No 247
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.58 E-value=0.79 Score=37.05 Aligned_cols=140 Identities=11% Similarity=0.141 Sum_probs=79.6
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHH
Q 004644 532 AINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611 (740)
Q Consensus 532 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 611 (740)
...|..++..++..+.... .+..-++.++.-....-+-+-..+.++.+-+.|.+.|-. ....++..|...|...+
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~~se- 87 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNKLSE- 87 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT---H-
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcchHH-
Confidence 4567888888888887653 233334444432233333344445555554444444431 12334444444443332
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 004644 612 FEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQ 690 (740)
Q Consensus 612 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 690 (740)
..+..+.+...+|.-++-.+++..+.+-+.-+|+...-++++|.+.|...++-+++++.=++|++
T Consensus 88 --------------~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 --------------YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred --------------HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33444556678888888888988888766777889999999999999999999999999888876
No 248
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=95.39 E-value=0.14 Score=45.50 Aligned_cols=97 Identities=16% Similarity=0.225 Sum_probs=74.6
Q ss_pred HHhccc--CCCCcchHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcc---------------
Q 004644 511 LLFKDA--DPVDVISWNSLIAGYAIN-----GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH--------------- 568 (740)
Q Consensus 511 ~~~~~~--~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~--------------- 568 (740)
..|+.. ...+-.+|..++..|.+. |..+=....++.|.+.|+.-|..+|+.||+.+=+
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 444444 355666777777777644 6677777888899999999999999999987633
Q ss_pred -cchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCCh
Q 004644 569 -VGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRL 608 (740)
Q Consensus 569 -~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 608 (740)
-.+.+-|+.++++|.. +|+-|+.+++..+++.+++.+..
T Consensus 115 yp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred CcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccHH
Confidence 2356778999999987 59999999999999999888764
No 249
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.37 E-value=0.37 Score=45.56 Aligned_cols=112 Identities=17% Similarity=0.161 Sum_probs=56.1
Q ss_pred cCCHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHH----HHhhcccchHHHH
Q 004644 503 CGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV----LSACSHVGLVDGG 575 (740)
Q Consensus 503 ~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l----l~a~~~~g~~~~a 575 (740)
.|+.-+|...++++. |.|..+|+---.+|...|+...-...+++.+-. ..||...|..+ .-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 344444444444443 556666666666666666666666666665543 23443322222 1223445666666
Q ss_pred HHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhC
Q 004644 576 LKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM 618 (740)
Q Consensus 576 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 618 (740)
.+.-++..+ ++|. .-.-......+.-.|+..++.+++..-
T Consensus 195 Ek~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 665555543 3333 222233444455556666666666544
No 250
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.34 E-value=2.5 Score=39.64 Aligned_cols=163 Identities=19% Similarity=0.151 Sum_probs=111.8
Q ss_pred hhHHHHHHHHhhccCCHHHHHHHhcccCC---CCcchHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCC----ChHHHHH
Q 004644 490 LFVGNSLITMYAKCGRIQNAELLFKDADP---VDVISWNSLIA-GYAINGNATEAIKLFEEMVMEGVAP----DPVTFIG 561 (740)
Q Consensus 490 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~ 561 (740)
...+......+...+....+.+.+..... .+......... .+...|+++.|...|.+... ..| ....+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 172 (291)
T COG0457 95 AEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLA 172 (291)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHH
Confidence 33444455555566667777777765552 22222333334 68888999999999999865 344 2233444
Q ss_pred HHHhhcccchHHHHHHHHHHhhhhcCCcC-CcchHHHHhhhhhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 004644 562 VLSACSHVGLVDGGLKLFECMTEVYAIEP-LVEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPN-AGIWGTLLGACRMHQ 638 (740)
Q Consensus 562 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g 638 (740)
....+...++.+.+...+...... ... ....+..+...+...|.+++|...+... ...|+ ...+..+...+...+
T Consensus 173 ~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (291)
T COG0457 173 LGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELG 250 (291)
T ss_pred hhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcC
Confidence 444466788999999999988763 222 3566788888899999999999888665 34454 445555666666677
Q ss_pred CHHHHHHHHHHhHccCCC
Q 004644 639 NIKLGRIAVEKLSELEPQ 656 (740)
Q Consensus 639 ~~~~a~~~~~~~~~~~p~ 656 (740)
+.+.+...+.+.++..|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 251 RYEEALEALEKALELDPD 268 (291)
T ss_pred CHHHHHHHHHHHHHhCcc
Confidence 899999999999999998
No 251
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.28 E-value=2.9 Score=47.11 Aligned_cols=155 Identities=17% Similarity=0.128 Sum_probs=74.2
Q ss_pred CChHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHhcCCCCCcccHHHHHHHHHhCCChHHHHHHHHhcccCC
Q 004644 122 GELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEERD 201 (740)
Q Consensus 122 ~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 201 (740)
++++.|+..+..++... |.-..+.-.+.|-+.+|..++..-.+.-...|.+....+.+.+.+++|.-+|+..-+
T Consensus 894 ~ry~~AL~hLs~~~~~~----~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-- 967 (1265)
T KOG1920|consen 894 KRYEDALSHLSECGETY----FPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK-- 967 (1265)
T ss_pred HHHHHHHHHHHHcCccc----cHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc--
Confidence 56666666666665222 222333334556666666665433333333444455555566666666666655432
Q ss_pred cchHHHHHHHHhcCCChHHHHHHhcccCCCchhHH---HHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcC
Q 004644 202 VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSW---VTMLSGYARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRG 278 (740)
Q Consensus 202 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g 278 (740)
....+.+|...|+|.+|..+..++..+-.... ..|+.-+...++.-+|-++..+.... ..-.+..|++..
T Consensus 968 ---lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd----~~~av~ll~ka~ 1040 (1265)
T KOG1920|consen 968 ---LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD----PEEAVALLCKAK 1040 (1265)
T ss_pred ---HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC----HHHHHHHHhhHh
Confidence 11224445555556555555555442222222 44555555555555555554443211 122333344444
Q ss_pred CHHHHHHHHhh
Q 004644 279 QIEEAARLFIE 289 (740)
Q Consensus 279 ~~~~A~~~~~~ 289 (740)
.|++|+++-..
T Consensus 1041 ~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1041 EWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHHh
Confidence 55555554443
No 252
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.27 E-value=0.092 Score=45.13 Aligned_cols=70 Identities=20% Similarity=0.267 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhh----hcCCcCCcch
Q 004644 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTE----VYAIEPLVEH 594 (740)
Q Consensus 524 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 594 (740)
...++..+...|++++|+.+.+++.... +-|...+..++.++...|+..+|.+.|+.+.+ .+|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4455566667777777777777777642 33455777777777777777777777766653 4577776543
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.21 E-value=0.96 Score=45.74 Aligned_cols=97 Identities=11% Similarity=0.150 Sum_probs=51.6
Q ss_pred HHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhCCC--CCCHH--HHHHHHHHHHhc
Q 004644 562 VLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKI--KPNAG--IWGTLLGACRMH 637 (740)
Q Consensus 562 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~--~~~~l~~~~~~~ 637 (740)
+..++-+.|+.++|++.|+.|.+.++..-.......|++.|...+.+.++..++.+... -|... +|++.+-..+.-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 33344455555555555555554432212233445566666667777777666665531 23332 344444333322
Q ss_pred CC---------------HHHHHHHHHHhHccCCCCC
Q 004644 638 QN---------------IKLGRIAVEKLSELEPQKT 658 (740)
Q Consensus 638 g~---------------~~~a~~~~~~~~~~~p~~~ 658 (740)
+| ...|.+++.++.+.+|.-|
T Consensus 345 ~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 345 GDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred ccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 22 1235678889988888754
No 254
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.21 E-value=5.5 Score=42.81 Aligned_cols=98 Identities=10% Similarity=0.107 Sum_probs=50.3
Q ss_pred HHHHhCCChHHHHHHHHhcccCCc-----chHHHHHHHHhcCCChHHHHHHhcccCCCchhHHHHHHHHHHhcCChHHHH
Q 004644 179 SGYTKNGEMHLASKFFEAMEERDV-----VSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEAR 253 (740)
Q Consensus 179 ~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 253 (740)
.-+.+.+.+++|+..-+.....-+ ......+..+...|+++.|-...-.+...+..-|..-+..+...+......
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia 443 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIA 443 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhh
Confidence 344556666666666655443111 223344555555666666666655555555555555555555555544333
Q ss_pred HHhccCCC-CCcchHHHHHHHHHH
Q 004644 254 RLFDQMPI-RNVVAWNAMIAAYVQ 276 (740)
Q Consensus 254 ~~~~~~~~-~~~~~~~~l~~~~~~ 276 (740)
.++-.-++ -++..|..++..+..
T Consensus 444 ~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 444 PYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccCCCCCcccCchHHHHHHHHHHH
Confidence 33222221 244566666666555
No 255
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.10 E-value=2.3 Score=39.25 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=15.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC
Q 004644 527 LIAGYAINGNATEAIKLFEEMVME 550 (740)
Q Consensus 527 l~~~~~~~g~~~~A~~~~~~m~~~ 550 (740)
+..-|.+.|.+-.|..-+++|++.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc
Confidence 345566666666666666666664
No 256
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.10 E-value=0.5 Score=45.29 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=21.8
Q ss_pred HHcCCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHhhhhhhhHHH
Q 004644 430 FLQNEFHLDALKIFVLMTQEG--KKADHSTLACALSACAHLAALQLG 474 (740)
Q Consensus 430 ~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~~l~~~~~~~~~~~a 474 (740)
+.+..+.++|+..+.+-+..- ...-..++..+..+.++.|..+.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~m 62 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEM 62 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHH
Confidence 445667777777766544321 111122344444455555544433
No 257
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=2.6 Score=38.37 Aligned_cols=14 Identities=14% Similarity=0.465 Sum_probs=6.9
Q ss_pred CChHHHHHHHHHHH
Q 004644 535 GNATEAIKLFEEMV 548 (740)
Q Consensus 535 g~~~~A~~~~~~m~ 548 (740)
-++++|+++|++..
T Consensus 124 v~Pd~AlqlYqral 137 (308)
T KOG1585|consen 124 VKPDDALQLYQRAL 137 (308)
T ss_pred CCHHHHHHHHHHHH
Confidence 34555555555443
No 258
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.92 E-value=0.047 Score=47.26 Aligned_cols=58 Identities=12% Similarity=0.031 Sum_probs=36.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004644 631 LGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688 (740)
Q Consensus 631 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 688 (740)
..+..+.+..+.|+....+++++.|..-.+....+.+|.+..++++|++-++++.+..
T Consensus 141 aaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 3344455666666666666666666666666666666666666666666666665544
No 259
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.89 E-value=1.5 Score=45.30 Aligned_cols=132 Identities=11% Similarity=0.183 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHhhhCCHHHHHHHHhhCCCCchhHHHHHHHHHHhcCChhHH
Q 004644 266 AWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEA 345 (740)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 345 (740)
..+.++..+.+.|.++.|+.+-.. + ..-.....+.|+++.|.++..+.. +...|..|+.....+|+++-|
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lA 366 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELA 366 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHH
Confidence 345555555666666666655332 1 223344445555555555544432 222333333333333333333
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHccCCHHHHHHHHHhh
Q 004644 346 NQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414 (740)
Q Consensus 346 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 414 (740)
++.|.+... +..|+-.|.-.|+.+.-.++.+.+...+. ++....++.-.|+.++..+++.+.
T Consensus 367 e~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~--~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 367 EECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERGD--INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHccC--HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 333333321 34444445555554444444433332211 222233333344444444444443
No 260
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.71 E-value=1.6 Score=45.14 Aligned_cols=154 Identities=13% Similarity=0.140 Sum_probs=90.7
Q ss_pred HHHHcCCHHHHHHHHh--hCCC-CChhhHHHHHHHHhhhCCHHHHHHHHhhCCCCchhHHHHHHHHHHhcCChhHHHHHH
Q 004644 273 AYVQRGQIEEAARLFI--EMPE-RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIF 349 (740)
Q Consensus 273 ~~~~~g~~~~A~~~~~--~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 349 (740)
...-.|+++++.+... ++.+ -+..-...++.-+.+.|..+.|+++... ...-.....++|+++.|.++.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D--------~~~rFeLAl~lg~L~~A~~~a 341 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD--------PDHRFELALQLGNLDIALEIA 341 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHHHHCT-HHHHHHHC
T ss_pred HHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC--------hHHHhHHHHhcCCHHHHHHHH
Confidence 3445788888666654 2221 1234467788888889999999887543 123345667888888888887
Q ss_pred hhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHccCCHHHHHHHHHhhCCCCCeecHHHHHHH
Q 004644 350 DKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISG 429 (740)
Q Consensus 350 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~ 429 (740)
+.+. ++..|..|.+...+.|+++-|...|.+..+ +..|.-.|.-.|+.+.-.++.+......+ ++....+
T Consensus 342 ~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~---~n~af~~ 411 (443)
T PF04053_consen 342 KELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERGD---INIAFQA 411 (443)
T ss_dssp CCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----HHHHHHH
T ss_pred HhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHccC---HHHHHHH
Confidence 7764 666888888888888888888888887654 45566667777776665555554421111 3444444
Q ss_pred HHcCCChHHHHHHHH
Q 004644 430 FLQNEFHLDALKIFV 444 (740)
Q Consensus 430 ~~~~~~~~~A~~~~~ 444 (740)
+.-.|+.++..+++.
T Consensus 412 ~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 412 ALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHT-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 445555555555544
No 261
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.56 E-value=0.049 Score=51.28 Aligned_cols=110 Identities=13% Similarity=0.041 Sum_probs=76.9
Q ss_pred HHhhcccchHHHHHHHHHHhhhhcCCcC-CcchHHHHhhhhhccCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC
Q 004644 563 LSACSHVGLVDGGLKLFECMTEVYAIEP-LVEHYACMIDLLSRAGRLDEAFEMVKGMK-IKP-NAGIWGTLLGACRMHQN 639 (740)
Q Consensus 563 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~ 639 (740)
..-|.+.|.+++|+.+|...... .| ++..+..-+.+|.+..++..|..-+...- ... -.-.|.--+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~---~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV---YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc---CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 55688999999999999988764 45 45566777778999999888877665432 111 11135444555556789
Q ss_pred HHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHH
Q 004644 640 IKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEK 679 (740)
Q Consensus 640 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 679 (740)
.++|.+-++.+++++|++.+ |-..|++..-..|+.-
T Consensus 181 ~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I 216 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIE----LKKSLARINSLRERKI 216 (536)
T ss_pred HHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhH
Confidence 99999999999999999654 4455555555555443
No 262
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=94.29 E-value=0.039 Score=44.52 Aligned_cols=28 Identities=46% Similarity=0.884 Sum_probs=23.3
Q ss_pred cccEEEEcCEEEEEecCCCCCCChHHHHHHHH
Q 004644 694 GCSWIEVKNQIHTFLSGDPKQCRTAEICNTLK 725 (740)
Q Consensus 694 ~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~ 725 (740)
||||+++ |.|++||++||++..+...+.
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~~~~~ 29 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELINKMKE 29 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHHHHHH
Confidence 7999976 999999999999866666443
No 263
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.20 E-value=0.079 Score=31.62 Aligned_cols=32 Identities=19% Similarity=0.088 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHccCCCC
Q 004644 626 IWGTLLGACRMHQNIKLGRIAVEKLSELEPQK 657 (740)
Q Consensus 626 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 657 (740)
+|..+...+...|+++.|...++++++++|++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 56677777888888888888888888888853
No 264
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.94 E-value=0.073 Score=32.34 Aligned_cols=26 Identities=8% Similarity=0.103 Sum_probs=21.0
Q ss_pred chHHHHHHHHhcCCchHHHHHHHHHh
Q 004644 660 CYALLSNMHAEAGRWDEVEKVRVSME 685 (740)
Q Consensus 660 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 685 (740)
+|..||++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36788999999999999999988743
No 265
>PRK10941 hypothetical protein; Provisional
Probab=93.80 E-value=0.42 Score=45.28 Aligned_cols=82 Identities=13% Similarity=0.041 Sum_probs=69.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCcccEEEEcCEEEE
Q 004644 627 WGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHT 706 (740)
Q Consensus 627 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 706 (740)
.+.|-.++...++++.|.++.+.++.+.|++|.-+...|-+|.+.|.+..|..-++...+.-
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~------------------ 245 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC------------------ 245 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC------------------
Confidence 56777788999999999999999999999999999999999999999999999888554332
Q ss_pred EecCCCCCCChHHHHHHHHHHHHHh
Q 004644 707 FLSGDPKQCRTAEICNTLKTLAAQI 731 (740)
Q Consensus 707 f~~~~~~~~~~~~~~~~l~~l~~~~ 731 (740)
...|.+..|...++.|..+.
T Consensus 246 -----P~dp~a~~ik~ql~~l~~~~ 265 (269)
T PRK10941 246 -----PEDPISEMIRAQIHSIEQKQ 265 (269)
T ss_pred -----CCchhHHHHHHHHHHHhhcC
Confidence 34577888888888887654
No 266
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.79 E-value=8.1 Score=38.68 Aligned_cols=70 Identities=16% Similarity=0.443 Sum_probs=41.6
Q ss_pred HHHhhcc--CCCccchHHHHHHHHcCCChhHHHHHHhhCCCCCcc---hHHHHHHHHhcCCChHHHHHHHHhccC
Q 004644 36 KIFSQMS--QKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLV---SWNSMIAGYLHNDKVKEARELFDKMFR 105 (740)
Q Consensus 36 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 105 (740)
++-++++ +.|..+|..|++-|..+|.+++-++.++++..|-+. +|..-+.+-....++.....+|.+.+.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 4444444 345556777777777777777777777777665442 455555555555566666666665543
No 267
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.73 E-value=1.4 Score=46.14 Aligned_cols=161 Identities=16% Similarity=0.087 Sum_probs=99.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCChH-----HHHHHHHh-hc---ccchHHHHHHHHHHhhhhcCCcCCcc
Q 004644 524 WNSLIAGYAINGNATEAIKLFEEMVMEG-VAPDPV-----TFIGVLSA-CS---HVGLVDGGLKLFECMTEVYAIEPLVE 593 (740)
Q Consensus 524 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~-----~~~~ll~a-~~---~~g~~~~a~~~~~~~~~~~~~~p~~~ 593 (740)
...++....-.|+-+.+++.+.+..+.+ +.-... .|..++.. +. .....+.+.++++.+.+.| |+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcH
Confidence 3445555556677777777766655422 111110 12222222 22 2456778888888887754 5533
Q ss_pred hHH-HHhhhhhccCChHHHHHHHHhCC-CC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHH-H
Q 004644 594 HYA-CMIDLLSRAGRLDEAFEMVKGMK-IK-----PNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALL-S 665 (740)
Q Consensus 594 ~~~-~l~~~~~~~g~~~~A~~~~~~~~-~~-----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l-~ 665 (740)
.|. .-+..+...|++++|++.++..- .+ -....+--+.+.+...+++++|...+.++.+.+......|..+ |
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 333 33456677888999988887542 11 1223455566677788899999999999998887776665544 4
Q ss_pred HHHHhcCCc-------hHHHHHHHHHhhC
Q 004644 666 NMHAEAGRW-------DEVEKVRVSMEGS 687 (740)
Q Consensus 666 ~~~~~~g~~-------~~a~~~~~~~~~~ 687 (740)
-+|...|+. ++|.++++++...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 556678888 8888888777543
No 268
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.70 E-value=13 Score=40.62 Aligned_cols=172 Identities=13% Similarity=0.120 Sum_probs=103.7
Q ss_pred HHHHHHHccCChhHHHHHHhhccCCCc---cchHHHHHHHHcCCChhHHHHHHhhCCC-CCcchHHHHHHHHhcCCChHH
Q 004644 20 KKITQLGKSGRVEEAIKIFSQMSQKNT---VTYNSMISAYAKNGRVNDARKLFEQMPQ-RNLVSWNSMIAGYLHNDKVKE 95 (740)
Q Consensus 20 ~~~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~ 95 (740)
.-+..+.+..-++-|+.+.+...-+.. ......+..+.+.|++++|...|-+... -++ ..++.-|....+..+
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~Ikn 415 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKN 415 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHH
Confidence 457788888888888888876442211 2334456677788999999888876543 111 233444555555555
Q ss_pred HHHHHHhccC---CCcccHHHHHHHHHcCCChHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHhcCCCCCcc
Q 004644 96 ARELFDKMFR---PDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIV 172 (740)
Q Consensus 96 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 172 (740)
-..+++...+ .+..--+.|+.+|.+.+|.++-.++.+......-..-....+.++.+.+-+++|..+-.+... +
T Consensus 416 Lt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-h-- 492 (933)
T KOG2114|consen 416 LTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-H-- 492 (933)
T ss_pred HHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-C--
Confidence 5555555543 344455677888888888888777777664222122234455666666666777666554332 1
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHhcc
Q 004644 173 SWNSMLSGYTKNGEMHLASKFFEAME 198 (740)
Q Consensus 173 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 198 (740)
-..+-..+-..+++++|++.+..+.
T Consensus 493 -e~vl~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 493 -EWVLDILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred -HHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 1223334455677778877777664
No 269
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.69 E-value=16 Score=41.67 Aligned_cols=131 Identities=16% Similarity=0.172 Sum_probs=59.5
Q ss_pred HhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHhhhCCHHHHHHHHhhCCC
Q 004644 244 ARNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPY 323 (740)
Q Consensus 244 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (740)
-+.|-+.+|..++..=.+.-...|.+...-+...+.+++|.-.|+..-+ ..-.+.++...|+|.++..+..++..
T Consensus 919 ~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql~~ 993 (1265)
T KOG1920|consen 919 KKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQLSE 993 (1265)
T ss_pred HhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhhcC
Confidence 3444455555444322222223333344444445555555554443221 11233445556666666666666543
Q ss_pred CchhHH---HHHHHHHHhcCChhHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHHHHHHHHhc
Q 004644 324 KNIAAQ---TAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQM 383 (740)
Q Consensus 324 ~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 383 (740)
...... ..|+..+...+++-+|-++........ ...+..|++...+++|+.+-...
T Consensus 994 ~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 994 GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 322222 445555555666655555555433221 12223344444555555554443
No 270
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.62 E-value=2.5 Score=40.77 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=66.3
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHhCC-----CCChhHHHHHHHHhhccCCHHHHHHHhcccC-------CCCcc------
Q 004644 461 ALSACAHLAALQLGRQIHHLAIKSGY-----VNDLFVGNSLITMYAKCGRIQNAELLFKDAD-------PVDVI------ 522 (740)
Q Consensus 461 ~l~~~~~~~~~~~a~~~~~~~~~~g~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~------ 522 (740)
+-.+....+.++.+.+.|+.+.+... .....++.+|...|....++++|.-+..+.. -.|..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 33444444555555555554443211 1235677788888888888887765544322 12221
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCh-HHHHHHHHhhcccchHHHHHHHHHHh
Q 004644 523 SWNSLIAGYAINGNATEAIKLFEEMVM----EGVAPDP-VTFIGVLSACSHVGLVDGGLKLFECM 582 (740)
Q Consensus 523 ~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~ 582 (740)
+...|.-++...|..-.|.+.-++..+ .|-.|-. .....+.+.|-..|+.+.|+.-|+.+
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 223345566677777777777666543 2322221 23344555666677777766666654
No 271
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.60 E-value=0.55 Score=38.64 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=29.8
Q ss_pred CCcCCcchHHHHhhhhhccCChHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 004644 587 AIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM----KIKPNAGIWGTLLGACR 635 (740)
Q Consensus 587 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~ 635 (740)
++.|+.....+++.+|+..|++..|+++++.. +++-+..+|..|+.-+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 45566666666777777777777776665443 44444566766665543
No 272
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.55 E-value=4.1 Score=34.51 Aligned_cols=123 Identities=16% Similarity=0.219 Sum_probs=60.0
Q ss_pred HHHHHHHHcCCChHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCChhhHHHHHhcCCCCCcccHHHHHHHHHhCCChHH
Q 004644 112 ALMITCYTRKGELEKARELFDLL--PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHL 189 (740)
Q Consensus 112 ~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 189 (740)
..++..+...+.......+++.+ ..+.++...+.++..|++.+ ..+....++. ..+......++..|.+.+-+++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence 34444444455555555555554 22344556666677666543 3344444442 2233444456666666666666
Q ss_pred HHHHHHhcccCCcchHHHHHHHHhcC-CChHHHHHHhcccCCCchhHHHHHHHHHH
Q 004644 190 ASKFFEAMEERDVVSWNLMLDGYVEL-DDLDSAWKFFQKIPEQNVVSWVTMLSGYA 244 (740)
Q Consensus 190 A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 244 (740)
+.-++.++.. +...+..+... ++++.|.+++.+ ..++..|..++..+.
T Consensus 88 ~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~--~~~~~lw~~~~~~~l 136 (140)
T smart00299 88 AVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVK--QNNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 6666665522 11122222222 555555555554 234444555544443
No 273
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.53 E-value=9.4 Score=38.61 Aligned_cols=151 Identities=9% Similarity=-0.010 Sum_probs=83.7
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---ChHHHHHHHHhhcccchHHHHHHHHHHhhhh-cCCcCCcch
Q 004644 519 VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAP---DPVTFIGVLSACSHVGLVDGGLKLFECMTEV-YAIEPLVEH 594 (740)
Q Consensus 519 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~ 594 (740)
....+|..++..+.+.|+++.|...+.++...+..+ .+.....-+......|+..+|+..++..... ..-......
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 344578888888999999999999888887743221 2223333344556678888888888877762 111101111
Q ss_pred HHHHhhhhhccCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHhHccCCCCCcchHHHHHH
Q 004644 595 YACMIDLLSRAGRLDEAFEM-VKGMKIKPNAGIWGTLLGACRMH------QNIKLGRIAVEKLSELEPQKTSCYALLSNM 667 (740)
Q Consensus 595 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 667 (740)
...+...+.. ..+..... ........-..++..+...+... ++.+.+...++.+.+++|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111100 00000000 00000000111233333333333 888999999999999999998888888887
Q ss_pred HHhc
Q 004644 668 HAEA 671 (740)
Q Consensus 668 ~~~~ 671 (740)
+...
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6653
No 274
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.52 E-value=3.4 Score=34.99 Aligned_cols=121 Identities=16% Similarity=0.224 Sum_probs=55.2
Q ss_pred HHHHHHHcCCChhHHHHHHhhCCCC---CcchHHHHHHHHhcCCChHHHHHHHHhccCCCcccHHHHHHHHHcCCChHHH
Q 004644 51 SMISAYAKNGRVNDARKLFEQMPQR---NLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKA 127 (740)
Q Consensus 51 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 127 (740)
.++..+...+........++.+... ++..++.++..|++. +..+....+.. ..+.+.....+..|.+.+-++++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~ 88 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEA 88 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHH
Confidence 3444444444445555554444321 223445555555543 23333344432 23344445555666666666665
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhc-CChhhHHHHHhcCCCCCcccHHHHHHHHH
Q 004644 128 RELFDLLPNKEDTACWNAMVAGYAKI-GNYNEAKKLLDAMPSKNIVSWNSMLSGYT 182 (740)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 182 (740)
.-++.+++. +...+..+... ++++.|.+.+.+. .++..|..++..+.
T Consensus 89 ~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~l 136 (140)
T smart00299 89 VELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 555555432 22223333333 5556666655542 23335555554443
No 275
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.49 E-value=2.3 Score=44.68 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=60.7
Q ss_pred HHHHhhccCCHHHHHHHhcccCC-------CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhh-c
Q 004644 496 LITMYAKCGRIQNAELLFKDADP-------VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC-S 567 (740)
Q Consensus 496 l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~-~ 567 (740)
-..++...|++++|.+.|++... -....+--++..+...+++++|.+.|..+.+.. .-...+|..+..+| .
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHH
Confidence 34566777888888888886441 223445567778888999999999999999853 34455565555444 4
Q ss_pred ccchH-------HHHHHHHHHhhh
Q 004644 568 HVGLV-------DGGLKLFECMTE 584 (740)
Q Consensus 568 ~~g~~-------~~a~~~~~~~~~ 584 (740)
..|+. ++|.++|.++..
T Consensus 352 ~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 352 MLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred hhccchhhhhhHHHHHHHHHHHHH
Confidence 46666 777777777654
No 276
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.40 E-value=0.63 Score=38.28 Aligned_cols=94 Identities=17% Similarity=0.238 Sum_probs=59.8
Q ss_pred hHHHHHHHHhhccCCHHHHHHHhcccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccc
Q 004644 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG 570 (740)
Q Consensus 491 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g 570 (740)
.++.+++-++++.|+++....+++..-..++. +-...+. .-......|+..+..+++.+++..|
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~-------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n~ 66 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN-------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYNG 66 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC-------CccccCc---------cCCCCCCCCCHHHHHHHHHHHHhcc
Confidence 45566666666777766666666543211111 0000000 1112235688888899999999999
Q ss_pred hHHHHHHHHHHhhhhcCCcCCcchHHHHhh
Q 004644 571 LVDGGLKLFECMTEVYAIEPLVEHYACMID 600 (740)
Q Consensus 571 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 600 (740)
++..|.++.+...+.|+++-+...|..|..
T Consensus 67 ~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 67 DIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred cHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999999988886666667776654
No 277
>PRK12798 chemotaxis protein; Reviewed
Probab=93.23 E-value=10 Score=38.03 Aligned_cols=180 Identities=17% Similarity=0.242 Sum_probs=117.8
Q ss_pred ccCCHHHHHHHhcccCC----CCcchHHHHHHHHH-hcCChHHHHHHHHHHHHCCCCCChH----HHHHHHHhhcccchH
Q 004644 502 KCGRIQNAELLFKDADP----VDVISWNSLIAGYA-INGNATEAIKLFEEMVMEGVAPDPV----TFIGVLSACSHVGLV 572 (740)
Q Consensus 502 ~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~a~~~~g~~ 572 (740)
-.|+.+++.+.+..+.+ +....+-+|+.+-. ...++.+|+++|+...- .-|-.. ....-+..+...|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcH
Confidence 36899999999998873 44556777776654 45689999999998765 345432 333334456789999
Q ss_pred HHHHHHHHHhhhhcCCcCCcchH-HHHhhhhhccC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004644 573 DGGLKLFECMTEVYAIEPLVEHY-ACMIDLLSRAG---RLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVE 648 (740)
Q Consensus 573 ~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 648 (740)
+++..+-.+-...|...|-...| ..++..+.+.+ ..+.-.+++..|.-.-...+|..+...-...|+.+.|..+.+
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99888888877777777764433 33444444443 333434455555422233478888888889999999999999
Q ss_pred HhHccCCCCCcchHHHHHHHHh-----cCCchHHHHHHHHH
Q 004644 649 KLSELEPQKTSCYALLSNMHAE-----AGRWDEVEKVRVSM 684 (740)
Q Consensus 649 ~~~~~~p~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~ 684 (740)
+++.+.+.+ ..-...+++|.. ..+.+++.+.+..+
T Consensus 282 ~A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 282 RALKLADPD-SADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 999987443 333344444443 34455655544433
No 278
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.14 E-value=0.35 Score=40.16 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=45.8
Q ss_pred hcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004644 636 MHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689 (740)
Q Consensus 636 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 689 (740)
..++.+.++.++.-+.-+.|+.++.-..-++++...|+|+||.++++.+.+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 478888888888888888999988888888899999999999999888876653
No 279
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.14 E-value=7.1 Score=36.07 Aligned_cols=235 Identities=16% Similarity=0.229 Sum_probs=122.8
Q ss_pred cCCHHHHHHHHHhcccC-------CHHHHHHHHHHHHccCCHHHHHHHHHhhCCCCCeecHHHHHHHHHcCCChHHHHHH
Q 004644 370 CGRMDEAINLFRQMVNK-------DIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKI 442 (740)
Q Consensus 370 ~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 442 (740)
....++|+.-|.+.++- .-.+...++..+.+.+++++....+.++. +.|.+....+
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL---------TYIkSAVTrN-------- 102 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL---------TYIKSAVTRN-------- 102 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH---------HHHHHHHhcc--------
Confidence 34677777777777541 12334456667777777777777776661 0111111111
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHh-----CCCCChhHHHHHHHHhhccCCHHHHHHHhcccC
Q 004644 443 FVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKS-----GYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD 517 (740)
Q Consensus 443 ~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~-----g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 517 (740)
-+..+.++++.-.+...+.+.-..+++.-.+. +-..-..+-+-|...|...|++..-.++++++.
T Consensus 103 ----------ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh 172 (440)
T KOG1464|consen 103 ----------YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLH 172 (440)
T ss_pred ----------ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHH
Confidence 11223334444333333333333333322211 111112233456666776777766666666543
Q ss_pred ----C----CC-------cchHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCChHHHHHHHHhhc-----ccchHHHHH
Q 004644 518 ----P----VD-------VISWNSLIAGYAINGNATEAIKLFEEMVMEG-VAPDPVTFIGVLSACS-----HVGLVDGGL 576 (740)
Q Consensus 518 ----~----~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~a~~-----~~g~~~~a~ 576 (740)
. .| ...|..=|..|....+-..-..+|++.+.-. .-|.+ ...++++-|. +.|.+++|-
T Consensus 173 ~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 173 QSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred HHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHH
Confidence 1 11 2346666777877787777778888776532 23444 3456666663 578888887
Q ss_pred HHHHHhhhhcCCc--CCcc---hHHHHhhhhhccCC--hH--HHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004644 577 KLFECMTEVYAIE--PLVE---HYACMIDLLSRAGR--LD--EAFEMVKGMKIKPNAGIWGTLLGACRM 636 (740)
Q Consensus 577 ~~~~~~~~~~~~~--p~~~---~~~~l~~~~~~~g~--~~--~A~~~~~~~~~~p~~~~~~~l~~~~~~ 636 (740)
.-|-++.+.|.-. |... -|..|++++.+.|- ++ +| +-....|.......|+.+|..
T Consensus 252 TDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEA----KPyKNdPEIlAMTnlv~aYQ~ 316 (440)
T KOG1464|consen 252 TDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEA----KPYKNDPEILAMTNLVAAYQN 316 (440)
T ss_pred hHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCccccc----CCCCCCHHHHHHHHHHHHHhc
Confidence 7666666544332 3321 25556677777662 11 11 111234555567788888754
No 280
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.09 E-value=0.35 Score=41.01 Aligned_cols=54 Identities=15% Similarity=0.195 Sum_probs=36.3
Q ss_pred HhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004644 635 RMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688 (740)
Q Consensus 635 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 688 (740)
...++.+.++.++.-+.-+.|+.++.-..-++++...|+|++|.++++.+.+.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 355666666666666666777777666666777777777777777777665544
No 281
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.91 E-value=0.27 Score=39.45 Aligned_cols=55 Identities=13% Similarity=-0.026 Sum_probs=50.9
Q ss_pred HHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004644 633 ACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGS 687 (740)
Q Consensus 633 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 687 (740)
+....|+++.|++.|.+++.+-|.++++|.+-+..|--+|+.++|+.-+++..+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 4567899999999999999999999999999999999999999999998887654
No 282
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.74 E-value=2.6 Score=42.82 Aligned_cols=143 Identities=13% Similarity=0.045 Sum_probs=76.1
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhh--hccCC
Q 004644 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLL--SRAGR 607 (740)
Q Consensus 530 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~g~ 607 (740)
-.-+..+...-++.-++.++ +.||-.+-..++ +--.+.-+.++.++|++..+.-. ..+.... ...|.
T Consensus 177 ~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE--------~~lg~s~~~~~~g~ 245 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE--------ASLGKSQFLQHHGH 245 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH--------Hhhchhhhhhcccc
Confidence 33445666667777777776 567655433332 23345557777887777665200 0000000 00111
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCC--CCcchHHHHHHHHhcCCchHHHHHHHHHh
Q 004644 608 LDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQ--KTSCYALLSNMHAEAGRWDEVEKVRVSME 685 (740)
Q Consensus 608 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 685 (740)
. .+.+..-...|-..+-..|...+++.|+.++|++.++.+++..|. +...+..|.+.+...+.+.|+..++.+--
T Consensus 246 ~---~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 246 F---WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred h---hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 1 111111111222223344555666777777777777777776664 34566777777777777777777777654
Q ss_pred h
Q 004644 686 G 686 (740)
Q Consensus 686 ~ 686 (740)
+
T Consensus 323 D 323 (539)
T PF04184_consen 323 D 323 (539)
T ss_pred c
Confidence 3
No 283
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.61 E-value=19 Score=39.62 Aligned_cols=56 Identities=14% Similarity=0.252 Sum_probs=33.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHccCC---CCCc-ch-----HHHHHHHHhcCCchHHHHHHHHHh
Q 004644 630 LLGACRMHQNIKLGRIAVEKLSELEP---QKTS-CY-----ALLSNMHAEAGRWDEVEKVRVSME 685 (740)
Q Consensus 630 l~~~~~~~g~~~~a~~~~~~~~~~~p---~~~~-~~-----~~l~~~~~~~g~~~~a~~~~~~~~ 685 (740)
++..-.-.|+..+.......+..+.+ +... .| ..+.+.|...|+.++|.....+..
T Consensus 540 lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 540 LMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 33333336777776666666665443 3232 23 245556788899999988877653
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.27 E-value=0.24 Score=30.07 Aligned_cols=29 Identities=14% Similarity=-0.008 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHccC
Q 004644 626 IWGTLLGACRMHQNIKLGRIAVEKLSELE 654 (740)
Q Consensus 626 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 654 (740)
+|..|...|...|++++|+..+++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46778888888999999999999966543
No 285
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.22 E-value=0.48 Score=30.36 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH
Q 004644 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557 (740)
Q Consensus 523 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 557 (740)
+|..+...|...|++++|+++|+++++. .|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL--DPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 5677778888888888888888888774 55544
No 286
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.86 E-value=2.2 Score=39.66 Aligned_cols=100 Identities=21% Similarity=0.242 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004644 470 ALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549 (740)
Q Consensus 470 ~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 549 (740)
.++-.-..+..|.+.|+.-|..+|+.|++.+-|..-+ |.|+ +.....-|-+ +-+=+++++++|..
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi-----------P~nv--fQ~~F~HYP~--QQ~C~I~vLeqME~ 151 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI-----------PQNV--FQKVFLHYPQ--QQNCAIKVLEQMEW 151 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc-----------cHHH--HHHHHhhCch--hhhHHHHHHHHHHH
Confidence 3444444556777788888888888888776553321 1111 1122222222 22347899999999
Q ss_pred CCCCCChHHHHHHHHhhcccchHH-HHHHHHHHhhh
Q 004644 550 EGVAPDPVTFIGVLSACSHVGLVD-GGLKLFECMTE 584 (740)
Q Consensus 550 ~~~~p~~~~~~~ll~a~~~~g~~~-~a~~~~~~~~~ 584 (740)
.|+.||..+-..++.++.+.|..- +-.+..-.|-+
T Consensus 152 hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 152 HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred cCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 999999999999999998877542 33444444433
No 287
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.56 E-value=1.9 Score=36.82 Aligned_cols=111 Identities=12% Similarity=0.100 Sum_probs=61.8
Q ss_pred HHhcCChhhHHHHHhcCCCCCcccHHHHH-----HHHHhCCChHHHHHHHHhccc--CCcchHHHHHH-----HHhcCCC
Q 004644 150 YAKIGNYNEAKKLLDAMPSKNIVSWNSML-----SGYTKNGEMHLASKFFEAMEE--RDVVSWNLMLD-----GYVELDD 217 (740)
Q Consensus 150 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~-----~~~~~~~ 217 (740)
..+.|+.++|+..|..+.+.+.-.|-.|. ....+.|+-..|...|.++-. +-|.....+.+ .+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 44567778888888877766655555543 345667777788877777764 22222222221 2334555
Q ss_pred hHHHHHHhcccC-CCc---hhHHHHHHHHHHhcCChHHHHHHhccCC
Q 004644 218 LDSAWKFFQKIP-EQN---VVSWVTMLSGYARNGRMLEARRLFDQMP 260 (740)
Q Consensus 218 ~~~a~~~~~~~~-~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 260 (740)
++......+.+- +.+ ...-..|.-+-.+.|++.+|...|..+.
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 555555444443 222 1233455555556666666666666554
No 288
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.39 E-value=8.6 Score=33.08 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=88.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHH-----Hhhhhhc
Q 004644 531 YAINGNATEAIKLFEEMVMEGVAPDPV-TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYAC-----MIDLLSR 604 (740)
Q Consensus 531 ~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-----l~~~~~~ 604 (740)
+++.+..++|+.-|..+.+.|...=++ ............|+...|...|+++-.. .|.+..... -..++..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence 467789999999999999887554333 3333444567899999999999998764 233333222 2346788
Q ss_pred cCChHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCc
Q 004644 605 AGRLDEAFEMVKGMKIKPNA---GIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTS 659 (740)
Q Consensus 605 ~g~~~~A~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 659 (740)
.|.++.....++.+..+.++ ..-.+|.-+..+.|++..|...|+.+.. +...|.
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~apr 201 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPR 201 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcH
Confidence 99999998888887533332 2356677777889999999999998876 333343
No 289
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.33 E-value=0.16 Score=30.25 Aligned_cols=30 Identities=10% Similarity=0.076 Sum_probs=25.0
Q ss_pred cchHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004644 659 SCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688 (740)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 688 (740)
..+..+|.+|...|++++|.+.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 468899999999999999999999876543
No 290
>PRK09687 putative lyase; Provisional
Probab=91.30 E-value=15 Score=35.56 Aligned_cols=75 Identities=12% Similarity=0.041 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhhCCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 004644 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSAC 465 (740)
Q Consensus 386 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~ 465 (740)
++..+-...+.++.+.++. .+...+-.....++ .....+.++...|.. +|+..+..+.... ||.......+.+|
T Consensus 204 ~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred CChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 3444444444555555543 23322222211222 223344455555553 4555555555432 3555555555555
Q ss_pred h
Q 004644 466 A 466 (740)
Q Consensus 466 ~ 466 (740)
.
T Consensus 278 ~ 278 (280)
T PRK09687 278 K 278 (280)
T ss_pred h
Confidence 3
No 291
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.05 E-value=0.39 Score=28.52 Aligned_cols=31 Identities=23% Similarity=0.448 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 004644 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD 555 (740)
Q Consensus 523 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 555 (740)
+|..++..|...|++++|+..|++.++ +.|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 577777888888888888888888777 3454
No 292
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.95 E-value=4.5 Score=34.55 Aligned_cols=85 Identities=18% Similarity=0.162 Sum_probs=45.8
Q ss_pred cccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhCCC-CCCHHHHHHHHHHHHhc-CCHHHH
Q 004644 567 SHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGMKI-KPNAGIWGTLLGACRMH-QNIKLG 643 (740)
Q Consensus 567 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~-g~~~~a 643 (740)
...++.+++..++..+.- +.|. .++-..-+..+.+.|+|.+|..+++.+.. .|....-.+|+..|... ||.+ =
T Consensus 21 l~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~-W 96 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS-W 96 (160)
T ss_pred HccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH-H
Confidence 445566666666666653 4555 33334445556777777777777777642 34444445555555433 3322 2
Q ss_pred HHHHHHhHccCC
Q 004644 644 RIAVEKLSELEP 655 (740)
Q Consensus 644 ~~~~~~~~~~~p 655 (740)
....+.+++..|
T Consensus 97 r~~A~evle~~~ 108 (160)
T PF09613_consen 97 RRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHhcCC
Confidence 333444444444
No 293
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.94 E-value=1.4 Score=38.52 Aligned_cols=98 Identities=11% Similarity=0.083 Sum_probs=52.7
Q ss_pred cccchHHHHHHHHHHhhhhcCCcCC---cchHHHHhhhhhccCChHHHHHHHHh-CCCCCCHH-HHHHHHHHHHhcCCHH
Q 004644 567 SHVGLVDGGLKLFECMTEVYAIEPL---VEHYACMIDLLSRAGRLDEAFEMVKG-MKIKPNAG-IWGTLLGACRMHQNIK 641 (740)
Q Consensus 567 ~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~-~~~~l~~~~~~~g~~~ 641 (740)
...|++++|..-|..++....-.|. ...|..-+.++.+.+.++.|++-..+ +.+.|... ...--..+|.+...++
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~e 185 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYE 185 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHH
Confidence 3445555555555554442111111 12244445556677777777765533 34444221 2222233566667788
Q ss_pred HHHHHHHHhHccCCCCCcchHHH
Q 004644 642 LGRIAVEKLSELEPQKTSCYALL 664 (740)
Q Consensus 642 ~a~~~~~~~~~~~p~~~~~~~~l 664 (740)
.|+.-|+++++++|....+-...
T Consensus 186 ealeDyKki~E~dPs~~ear~~i 208 (271)
T KOG4234|consen 186 EALEDYKKILESDPSRREAREAI 208 (271)
T ss_pred HHHHHHHHHHHhCcchHHHHHHH
Confidence 88888888888888875444333
No 294
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.37 E-value=0.54 Score=40.57 Aligned_cols=34 Identities=18% Similarity=0.129 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCC
Q 004644 640 IKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGR 673 (740)
Q Consensus 640 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 673 (740)
++.|+.-++.++.++|+...++..+|++|...|.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 4567777777888888888888888888776554
No 295
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=90.29 E-value=2.3 Score=39.53 Aligned_cols=100 Identities=18% Similarity=0.151 Sum_probs=77.9
Q ss_pred HHHHhcccC--CCCcchHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCChHHHHHHHHhhccc------------
Q 004644 509 AELLFKDAD--PVDVISWNSLIAGYAIN-----GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHV------------ 569 (740)
Q Consensus 509 A~~~~~~~~--~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~------------ 569 (740)
.+..|..+. ..|-.+|-+++..+..+ +..+=....++.|.+.|+.-|..+|..|+..+-+.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 455666666 56777888888777644 45666667788999999999999999999875432
Q ss_pred ----chHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChH
Q 004644 570 ----GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLD 609 (740)
Q Consensus 570 ----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 609 (740)
.+-+-++.++++|.. +|+.|+.++-..++.+++|.|..-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccH
Confidence 234568899999977 699999998899999999998754
No 296
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.13 E-value=0.66 Score=31.06 Aligned_cols=36 Identities=19% Similarity=0.138 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHH
Q 004644 629 TLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALL 664 (740)
Q Consensus 629 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 664 (740)
.+.-++.+.|+++.|++..+.+++++|+|..+-.+.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 345578899999999999999999999997654433
No 297
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.09 E-value=0.69 Score=43.95 Aligned_cols=94 Identities=20% Similarity=0.197 Sum_probs=65.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhc
Q 004644 527 LIAGYAINGNATEAIKLFEEMVMEGVAP-DPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSR 604 (740)
Q Consensus 527 l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 604 (740)
-+.-|.++|.+++|++.|.+.+. +.| |.+++..-..||.+...+..|..-...++.. .-. +..|+.-+.+-..
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---d~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---DKLYVKAYSRRMQARES 177 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---hHHHHHHHHHHHHHHHH
Confidence 46789999999999999999887 577 8899999999999999888888777766542 111 3334444444444
Q ss_pred cCChHHHHHHHHh-CCCCCCHH
Q 004644 605 AGRLDEAFEMVKG-MKIKPNAG 625 (740)
Q Consensus 605 ~g~~~~A~~~~~~-~~~~p~~~ 625 (740)
.|...||.+-++. +..+|+..
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccH
Confidence 4566666655543 24677644
No 298
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.03 E-value=1.6 Score=41.28 Aligned_cols=71 Identities=21% Similarity=0.328 Sum_probs=55.8
Q ss_pred hHHHHHHHHhhccCCHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCChHHHHH
Q 004644 491 FVGNSLITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVM-----EGVAPDPVTFIG 561 (740)
Q Consensus 491 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~ 561 (740)
.++..++..+..+|+.+.+.+.+++.. |-+...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 356677888888999999888888765 66777899999999999999999999988766 367776655443
No 299
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.72 E-value=0.41 Score=26.40 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=20.1
Q ss_pred cchHHHHHHHHhcCCchHHHHHHH
Q 004644 659 SCYALLSNMHAEAGRWDEVEKVRV 682 (740)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~a~~~~~ 682 (740)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788999999999999988775
No 300
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.62 E-value=0.042 Score=47.05 Aligned_cols=65 Identities=22% Similarity=0.444 Sum_probs=33.2
Q ss_pred HHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 004644 562 VLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQN 639 (740)
Q Consensus 562 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 639 (740)
++..|...|.++++.-++.++.. +...+..+...+++++|.+++...+ +...|..++..|..+++
T Consensus 76 ~~~~c~~~~l~~~a~~Ly~~~~~----------~~~al~i~~~~~~~~~a~e~~~~~~---~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 76 ALRLCEKHGLYEEAVYLYSKLGN----------HDEALEILHKLKDYEEAIEYAKKVD---DPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHTTTSHHHHHHHHHCCTT----------HTTCSSTSSSTHCSCCCTTTGGGCS---SSHHHHHHHHHHCTSTC
T ss_pred HHHHHHhcchHHHHHHHHHHccc----------HHHHHHHHHHHccHHHHHHHHHhcC---cHHHHHHHHHHHHhcCc
Confidence 44445555555555555554321 1112223445566666665555542 45567666666655543
No 301
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.56 E-value=21 Score=34.57 Aligned_cols=18 Identities=11% Similarity=-0.258 Sum_probs=13.4
Q ss_pred HHhcCCHHHHHHHHHHhH
Q 004644 634 CRMHQNIKLGRIAVEKLS 651 (740)
Q Consensus 634 ~~~~g~~~~a~~~~~~~~ 651 (740)
+.+.++++.|..-++-++
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 557788888888877554
No 302
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.37 E-value=2.5 Score=40.32 Aligned_cols=161 Identities=14% Similarity=0.056 Sum_probs=120.2
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHH----hhhhhccCCh
Q 004644 533 INGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACM----IDLLSRAGRL 608 (740)
Q Consensus 533 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----~~~~~~~g~~ 608 (740)
-.|++.+|-..++++++. .+.|...+...=++|+..|..+.-...++++.. .-+|+...|..+ ...+..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 468888999999999886 566777888888999999999999999998875 346776555443 4456689999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCC----CcchHHHHHHHHhcCCchHHHHHHH
Q 004644 609 DEAFEMVKGM-KIKP-NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK----TSCYALLSNMHAEAGRWDEVEKVRV 682 (740)
Q Consensus 609 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 682 (740)
++|++..++. .+.| |.-.-.++.......|+..++.+...+--..=.+. ...|-+-+-.|.+.+.++.|++++.
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998665 4444 55566777778888999999988876643221111 3456777778888999999999998
Q ss_pred HHhhCCCccCCccc
Q 004644 683 SMEGSGAQKQPGCS 696 (740)
Q Consensus 683 ~~~~~~~~~~~~~s 696 (740)
.-.-..+.|..+.+
T Consensus 272 ~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 272 REIWKRLEKDDAVA 285 (491)
T ss_pred HHHHHHhhccchhh
Confidence 76555666665533
No 303
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=89.36 E-value=1 Score=30.17 Aligned_cols=51 Identities=12% Similarity=0.191 Sum_probs=37.5
Q ss_pred chHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCcccEEEEcCEEEEEecCCCCCCChHHHHHHHHHHHHHhhcCCC
Q 004644 660 CYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTLAAQIRNTPL 736 (740)
Q Consensus 660 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 736 (740)
....++-.+.+.|++++|.+..+.+.+ ..|...+..+....+..+|.++++
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccCC
Confidence 456788899999999999999998873 335556666666667778877764
No 304
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.28 E-value=4.4 Score=35.93 Aligned_cols=61 Identities=18% Similarity=0.162 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH--HHHHHHHhhcccchHHHHHHHHHHhhh
Q 004644 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV--TFIGVLSACSHVGLVDGGLKLFECMTE 584 (740)
Q Consensus 524 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~ 584 (740)
+..++..|.+.|+.++|++.|.++.+....|... .+..++..+...|++..+..+..++..
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4555666666666666666666666554444433 344555556666666666666555544
No 305
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.12 E-value=0.27 Score=28.93 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=17.4
Q ss_pred hHHHHHHHHhcCCchHHHHHHHHHhh
Q 004644 661 YALLSNMHAEAGRWDEVEKVRVSMEG 686 (740)
Q Consensus 661 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 686 (740)
+..+|.+|.+.|++++|.+.++.+.+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45666677777777777777766654
No 306
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.07 E-value=9.1 Score=33.80 Aligned_cols=119 Identities=12% Similarity=0.008 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHCCCCCChHHH--HHHHHhhcccchHHHHHHHHHHhhhhcCCcCC--cchHHHHhhhhhccCChHHHHHH
Q 004644 539 EAIKLFEEMVMEGVAPDPVTF--IGVLSACSHVGLVDGGLKLFECMTEVYAIEPL--VEHYACMIDLLSRAGRLDEAFEM 614 (740)
Q Consensus 539 ~A~~~~~~m~~~~~~p~~~~~--~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 614 (740)
+.....+++....-.....++ ..+...+...|++++|...++..... ....+ .-.--.|.......|.+++|+..
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~q~~k~D~AL~~ 148 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ-TKDENLKALAALRLARVQLQQKKADAALKT 148 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 455555566543211111122 22334567788888888888876542 11111 11123456778889999999999
Q ss_pred HHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCC
Q 004644 615 VKGMKIKP-NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKT 658 (740)
Q Consensus 615 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 658 (740)
++....+. .+.....-+.++...|+-+.|+..|+++++.+++.+
T Consensus 149 L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 149 LDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 88764211 122233334567788999999999999998875543
No 307
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.90 E-value=41 Score=37.00 Aligned_cols=51 Identities=10% Similarity=0.126 Sum_probs=28.8
Q ss_pred HhhhhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004644 598 MIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEK 649 (740)
Q Consensus 598 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 649 (740)
++..+....+.+.+..+.+..+. -++..|.-++..+...+.++.-.+...+
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~-~~p~l~~~~L~yF~~~~~i~~~~~~v~~ 761 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGK-EDPSLWLHALKYFVSEESIEDCYEIVYK 761 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCc-cChHHHHHHHHHHhhhcchhhHHHHHHH
Confidence 34445555666666666666652 2666676666666665554444433333
No 308
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.48 E-value=0.79 Score=26.82 Aligned_cols=30 Identities=10% Similarity=-0.047 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHccCCCC
Q 004644 628 GTLLGACRMHQNIKLGRIAVEKLSELEPQK 657 (740)
Q Consensus 628 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 657 (740)
..+..++...|+.+.|...++++++..|++
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 345667778899999999999999999974
No 309
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.22 E-value=0.038 Score=47.28 Aligned_cols=128 Identities=11% Similarity=0.075 Sum_probs=81.9
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccCCCCcchHHHHHHHHHhcCChHHH
Q 004644 461 ALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEA 540 (740)
Q Consensus 461 ~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 540 (740)
++..+.+.+.+.....+++.+.+.+...+..+.+.++..|++.+..+...++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4566777777788888888888777667788888888888888887888888774333 3334566777788888888
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCC
Q 004644 541 IKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGR 607 (740)
Q Consensus 541 ~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 607 (740)
.-++.++-... . .+..+...+++++|.+++.. .++.+.|..+++.+...+.
T Consensus 90 ~~Ly~~~~~~~---~------al~i~~~~~~~~~a~e~~~~-------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 90 VYLYSKLGNHD---E------ALEILHKLKDYEEAIEYAKK-------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHCCTTHT---T------CSSTSSSTHCSCCCTTTGGG-------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHcccHH---H------HHHHHHHHccHHHHHHHHHh-------cCcHHHHHHHHHHHHhcCc
Confidence 88777643211 1 11113455666666644432 2346677777777766554
No 310
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.98 E-value=0.52 Score=28.12 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=18.2
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHH
Q 004644 136 NKEDTACWNAMVAGYAKIGNYNEAK 160 (740)
Q Consensus 136 ~~~~~~~~~~l~~~~~~~g~~~~A~ 160 (740)
+|.++.+|+.|+.+|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4567777777777777777777765
No 311
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.94 E-value=21 Score=32.57 Aligned_cols=20 Identities=5% Similarity=-0.075 Sum_probs=9.9
Q ss_pred cCCHHHHHHHHHHhHccCCC
Q 004644 637 HQNIKLGRIAVEKLSELEPQ 656 (740)
Q Consensus 637 ~g~~~~a~~~~~~~~~~~p~ 656 (740)
.+++.+|+.+|+++..-.-+
T Consensus 167 leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 34555555555555443333
No 312
>PRK09687 putative lyase; Provisional
Probab=87.93 E-value=27 Score=33.78 Aligned_cols=135 Identities=12% Similarity=0.042 Sum_probs=70.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHhcc-cCCHHHHHHHHHHHHccC-CHHHHHHHHHhhCCCCCeecHHHHHHHHHcC
Q 004644 356 DVVCWNVMIKGYAQCGRMDEAINLFRQMV-NKDIVTWNTMIAGYAQIR-QMDDAVKIFEEMGKRRNTVSWNALISGFLQN 433 (740)
Q Consensus 356 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~ 433 (740)
+..+-...+.++.+.++ .+++..+-.++ .+|...-...+.++.+.+ +...+...+..+...++...-...+.++.+.
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 44455555556666665 34455544444 345544444445555442 2345555555554456666666666777776
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHh
Q 004644 434 EFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMY 500 (740)
Q Consensus 434 ~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~ 500 (740)
++ ..++..+-...+.+. ....++.+....|+. .+...+..+.+. .+|..+-...+..+
T Consensus 220 ~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 220 KD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 66 456655555555432 123455666666664 344444444432 23555554444443
No 313
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.68 E-value=86 Score=39.29 Aligned_cols=62 Identities=11% Similarity=-0.016 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhhCCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 004644 388 IVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQE 449 (740)
Q Consensus 388 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 449 (740)
..+|-.........|+++.|....-.....+-...+-..+.-..+.|+...|+.++++-...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 46677777778888888888776665544445555666677778888888888888877643
No 314
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=87.55 E-value=4.9 Score=32.89 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=14.2
Q ss_pred HHHhcCCHHHHHHHHHHhHccCCCCC
Q 004644 633 ACRMHQNIKLGRIAVEKLSELEPQKT 658 (740)
Q Consensus 633 ~~~~~g~~~~a~~~~~~~~~~~p~~~ 658 (740)
+|.+.++++.+++..+.+++.+|+|.
T Consensus 80 g~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 80 GHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred HHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 45555555555555555555555544
No 315
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.19 E-value=2.6 Score=37.39 Aligned_cols=76 Identities=13% Similarity=0.108 Sum_probs=53.0
Q ss_pred hhccCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCC----CCcchHHHHHHHHhcCCch
Q 004644 602 LSRAGRLDEAFEMVKGMKIKP--NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQ----KTSCYALLSNMHAEAGRWD 675 (740)
Q Consensus 602 ~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~ 675 (740)
..+.|+- +|.+.|-++...| +.......+..|....|.+.++..+-+++++.+. ||+.+..|+.+|.+.|+++
T Consensus 117 Wsr~~d~-~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGDQ-EALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCcH-HHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 3455553 5565555553333 3333444445566788999999999999998654 3788999999999999998
Q ss_pred HHH
Q 004644 676 EVE 678 (740)
Q Consensus 676 ~a~ 678 (740)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 874
No 316
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.01 E-value=1.4 Score=38.53 Aligned_cols=103 Identities=16% Similarity=0.155 Sum_probs=70.6
Q ss_pred HHHHHHhhccCCC-ccchHH-----HHHHHHcCCChhHHHHHHhhCCCCC-c-----chHHHHHHHHhcCCChHHHHHHH
Q 004644 33 EAIKIFSQMSQKN-TVTYNS-----MISAYAKNGRVNDARKLFEQMPQRN-L-----VSWNSMIAGYLHNDKVKEARELF 100 (740)
Q Consensus 33 ~A~~~~~~~~~~~-~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~-~-----~~~~~l~~~~~~~g~~~~A~~~~ 100 (740)
+.....+.....+ ...|.. ++..+..+|++++|...++...... . ..-.+|++.....|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4444555544333 333433 3346778899999999988766422 1 23456788888999999999999
Q ss_pred HhccCCC--cccHHHHHHHHHcCCChHHHHHHHhhCC
Q 004644 101 DKMFRPD--LFSWALMITCYTRKGELEKARELFDLLP 135 (740)
Q Consensus 101 ~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 135 (740)
+....++ +.....-+.++...|+-++|+.-|++..
T Consensus 150 ~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl 186 (207)
T COG2976 150 DTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKAL 186 (207)
T ss_pred hccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHH
Confidence 8876653 3334555688888999999999998873
No 317
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=86.89 E-value=0.67 Score=46.52 Aligned_cols=92 Identities=15% Similarity=0.165 Sum_probs=48.9
Q ss_pred hcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHH-HhCCCCCCHH-HHHHHHHHHHhcCCHHH
Q 004644 566 CSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMV-KGMKIKPNAG-IWGTLLGACRMHQNIKL 642 (740)
Q Consensus 566 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~-~~~~l~~~~~~~g~~~~ 642 (740)
....++++.|+.++..+++ ++|+ ...|..-..++.+.+.+..|+.-+ +.+...|... .|.--..+|...+.+..
T Consensus 14 ~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred hcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 3445566666666666654 4555 333333445556666666665433 3334444332 23333345555566666
Q ss_pred HHHHHHHhHccCCCCCcc
Q 004644 643 GRIAVEKLSELEPQKTSC 660 (740)
Q Consensus 643 a~~~~~~~~~~~p~~~~~ 660 (740)
|...++....+.|+++.+
T Consensus 91 A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHHHhhhcCcCcHHH
Confidence 666666666666666543
No 318
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=86.85 E-value=1.2 Score=25.33 Aligned_cols=30 Identities=23% Similarity=0.056 Sum_probs=16.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHccCCC
Q 004644 627 WGTLLGACRMHQNIKLGRIAVEKLSELEPQ 656 (740)
Q Consensus 627 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 656 (740)
|..+...+...|+++.|...++++++++|+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 444444555556666666666666555553
No 319
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.77 E-value=0.96 Score=26.76 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=25.0
Q ss_pred cchHHHHHHHHhcCCchHHHHHHHHHhh
Q 004644 659 SCYALLSNMHAEAGRWDEVEKVRVSMEG 686 (740)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 686 (740)
..|..+|.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3688999999999999999999998765
No 320
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.06 E-value=0.95 Score=28.33 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=22.1
Q ss_pred chHHHHHHHHhcCCchHHHHHHHHHhh
Q 004644 660 CYALLSNMHAEAGRWDEVEKVRVSMEG 686 (740)
Q Consensus 660 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 686 (740)
++..||.+|...|++++|..++++..+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 567899999999999999999887764
No 321
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.90 E-value=28 Score=31.86 Aligned_cols=59 Identities=20% Similarity=0.357 Sum_probs=35.3
Q ss_pred hhccCChHHHHHHHHhCC---CCCCHHHHHH---HH--HHHHhc-CCHHHHHHHHHHhHccCCCCCcc
Q 004644 602 LSRAGRLDEAFEMVKGMK---IKPNAGIWGT---LL--GACRMH-QNIKLGRIAVEKLSELEPQKTSC 660 (740)
Q Consensus 602 ~~~~g~~~~A~~~~~~~~---~~p~~~~~~~---l~--~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~ 660 (740)
-+..|++.+|++++++.. ...+..-|.. ++ ..|... .|.--+..++++..+++|...+.
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 345567777777766552 1122222321 22 235554 78888889999999999976543
No 322
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=85.52 E-value=14 Score=28.48 Aligned_cols=62 Identities=19% Similarity=0.203 Sum_probs=47.1
Q ss_pred HHHhhccCCHHHHHHHhcccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHH
Q 004644 497 ITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIG 561 (740)
Q Consensus 497 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 561 (740)
+..+...|++++|..+.+...-||...|-++.. .+.|..+++..-+.+|...| .|...+|..
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 345667899999999999888899999988754 46677777777787888776 666555543
No 323
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.49 E-value=0.65 Score=44.32 Aligned_cols=90 Identities=12% Similarity=0.196 Sum_probs=64.3
Q ss_pred cCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHH
Q 004644 605 AGRLDEAFEMVKGM-KIKPNAG-IWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRV 682 (740)
Q Consensus 605 ~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 682 (740)
.|.+++|++.+... +..|... .+.--.+++.+.+....|++-+..+++++||...-|-.-+.+....|+|++|.+.+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 56677777776543 4444333 344444556667777788888888888888888888888888888889998888888
Q ss_pred HHhhCCCccCCc
Q 004644 683 SMEGSGAQKQPG 694 (740)
Q Consensus 683 ~~~~~~~~~~~~ 694 (740)
.....+.....+
T Consensus 207 ~a~kld~dE~~~ 218 (377)
T KOG1308|consen 207 LACKLDYDEANS 218 (377)
T ss_pred HHHhccccHHHH
Confidence 887777654443
No 324
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.43 E-value=9.9 Score=39.65 Aligned_cols=111 Identities=16% Similarity=0.115 Sum_probs=50.8
Q ss_pred cCCChhHHHHHHhhCCCCCcchHHHHHHHHhcCCChHHHHHHHHhccCCCcccHHHHHHHHHcCCChHHHHHHHhhCCCC
Q 004644 58 KNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNK 137 (740)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 137 (740)
..|+++.|..++.++++ ...+.++..+-++|..++|+++. +|+.- -.....+.|+++.|.++..+.
T Consensus 598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s-----~D~d~---rFelal~lgrl~iA~~la~e~--- 663 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS-----TDPDQ---RFELALKLGRLDIAFDLAVEA--- 663 (794)
T ss_pred hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC-----CChhh---hhhhhhhcCcHHHHHHHHHhh---
Confidence 34555555554444442 22344455555555555555432 22211 112233445555555554443
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHhcCCCCCcccHHHHHHHHHhCCCh
Q 004644 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEM 187 (740)
Q Consensus 138 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 187 (740)
.+..-|..|++...+.|++..|.+.|.+.. -|..|+-.+...|+-
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----d~~~LlLl~t~~g~~ 708 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRAR-----DLGSLLLLYTSSGNA 708 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhc-----chhhhhhhhhhcCCh
Confidence 223335555555555555555555555432 244444444444443
No 325
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=85.38 E-value=20 Score=38.56 Aligned_cols=103 Identities=21% Similarity=0.212 Sum_probs=54.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHH
Q 004644 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDE 610 (740)
Q Consensus 531 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 610 (740)
|...+..+.|++.|++.-+ +.|+..+=..+...+..+|. .|+.-.+. ...-..|-.+++|.|.+++
T Consensus 297 ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~------~Fens~El------q~IgmkLn~LlgrKG~lek 362 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE------HFENSLEL------QQIGMKLNSLLGRKGALEK 362 (1226)
T ss_pred CcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh------hccchHHH------HHHHHHHHHHhhccchHHH
Confidence 3444556678888888776 67765432222222222221 11111000 0011234456788888777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCC
Q 004644 611 AFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK 657 (740)
Q Consensus 611 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 657 (740)
-.++++-. ..+.+-...+|+.+|..+.+.+.++.|..
T Consensus 363 lq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 363 LQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 66555421 12333445678888888888888887753
No 326
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=84.71 E-value=2.1 Score=38.81 Aligned_cols=86 Identities=13% Similarity=0.054 Sum_probs=53.2
Q ss_pred hhcccchHHHHHHHHHHhhhhcCCcCCc-chHHHHhhhhhccCChHHHHHHH-HhCCCCCCHHHHHH-HHHHHHhcCCHH
Q 004644 565 ACSHVGLVDGGLKLFECMTEVYAIEPLV-EHYACMIDLLSRAGRLDEAFEMV-KGMKIKPNAGIWGT-LLGACRMHQNIK 641 (740)
Q Consensus 565 a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~-l~~~~~~~g~~~ 641 (740)
-|.....++.|+..|.+.+. ++|.. .-|..-+..+.+..+++.+.+-. +++.+.||.+--.. +..+......+.
T Consensus 19 k~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 46667777778877776654 67774 44455556666677777765543 44456677664333 333445556677
Q ss_pred HHHHHHHHhHcc
Q 004644 642 LGRIAVEKLSEL 653 (740)
Q Consensus 642 ~a~~~~~~~~~~ 653 (740)
.|+..+.++..+
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 777777777543
No 327
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.14 E-value=1.9 Score=23.73 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHh
Q 004644 143 WNAMVAGYAKIGNYNEAKKLLD 164 (740)
Q Consensus 143 ~~~l~~~~~~~g~~~~A~~~~~ 164 (740)
...++..+...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445555666666666655554
No 328
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.05 E-value=14 Score=38.69 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=46.5
Q ss_pred hcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCCHHHHHHHHhhCCCCChhhHHHHHHHHhhhCCHHHHHHHHhhCCCC
Q 004644 245 RNGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIEEAARLFIEMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYK 324 (740)
Q Consensus 245 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 324 (740)
-.|+++.|..++..++. ...+.++..+.++|-.++|+++-. |+. .-.....+.|+++.|.++..+. .
T Consensus 598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s~-----D~d---~rFelal~lgrl~iA~~la~e~--~ 664 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELST-----DPD---QRFELALKLGRLDIAFDLAVEA--N 664 (794)
T ss_pred hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcCC-----Chh---hhhhhhhhcCcHHHHHHHHHhh--c
Confidence 45677777766665552 234556666677777777776532 221 1223344566677666665442 1
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHH
Q 004644 325 NIAAQTAMISGYVQNKRMDEANQIF 349 (740)
Q Consensus 325 ~~~~~~~l~~~~~~~~~~~~A~~~~ 349 (740)
+..-+..|++.....+++..|.+.|
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~ 689 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECF 689 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHH
Confidence 2222333333344444444444333
No 329
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=83.50 E-value=46 Score=32.44 Aligned_cols=65 Identities=12% Similarity=0.157 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHCCCCCChH--HHHHHHHhhcccch--HHHHHHHHHHhhhhcCCcCCcchHHHHhhhh
Q 004644 537 ATEAIKLFEEMVMEGVAPDPV--TFIGVLSACSHVGL--VDGGLKLFECMTEVYAIEPLVEHYACMIDLL 602 (740)
Q Consensus 537 ~~~A~~~~~~m~~~~~~p~~~--~~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 602 (740)
.+.+..+|+.+...|+..+.. ....++..+..... +.++.++++.+.+. ++++...+|..++-+-
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHHH
Confidence 356677888888888776543 33444444433332 45788888888886 8888887887665444
No 330
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=83.22 E-value=24 Score=28.97 Aligned_cols=82 Identities=13% Similarity=0.194 Sum_probs=46.7
Q ss_pred ccCCHHHHHHHhcccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHH
Q 004644 502 KCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFEC 581 (740)
Q Consensus 502 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~ 581 (740)
.||++......+-.... +..-....+......|+-++--+++..+.+. -+|++.....+..||.+.|+..++.+++.+
T Consensus 68 ~C~NlKrVi~C~~~~n~-~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 68 KCGNLKRVIECYAKRNK-LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp G-S-THHHHHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhcchHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 44554444444433322 1222444556777778887777777777653 367777777888888888888888888887
Q ss_pred hhhh
Q 004644 582 MTEV 585 (740)
Q Consensus 582 ~~~~ 585 (740)
+.+.
T Consensus 146 ACek 149 (161)
T PF09205_consen 146 ACEK 149 (161)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7664
No 331
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=82.61 E-value=5.1 Score=38.07 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=48.8
Q ss_pred cchHHHHhhhhhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHcc
Q 004644 592 VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKP-NAGIWGTLLGACRMHQNIKLGRIAVEKLSEL 653 (740)
Q Consensus 592 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 653 (740)
+.++..++..+...|+++.+.+.++++ ...| +...|..++.+|...|+...|+..|+++.++
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 346777888888888888888888776 4455 6678888888888888888888888887664
No 332
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.48 E-value=6.3 Score=34.91 Aligned_cols=60 Identities=17% Similarity=0.109 Sum_probs=48.1
Q ss_pred hHHHHHHHHhhccCCHHHHHHHhcccCCCC------cchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004644 491 FVGNSLITMYAKCGRIQNAELLFKDADPVD------VISWNSLIAGYAINGNATEAIKLFEEMVME 550 (740)
Q Consensus 491 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 550 (740)
..+..+++.|.+.|+.+.|.+.|.++.+.. +..+-.++......|++..+.....+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456678899999999999999999877432 245677888888899999999888887653
No 333
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=82.43 E-value=2.7 Score=32.13 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=29.1
Q ss_pred HHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004644 644 RIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGS 687 (740)
Q Consensus 644 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 687 (740)
...+++.++.+|+|......++..+...|++++|.+.+-.+...
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34566667777777777777777777777777777766655443
No 334
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=82.27 E-value=65 Score=33.26 Aligned_cols=88 Identities=10% Similarity=0.058 Sum_probs=37.0
Q ss_pred HHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhh---hccCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHh
Q 004644 562 VLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLL---SRAGRLDEAFEMVKGMK--IKPNAGIWGTLLGACRM 636 (740)
Q Consensus 562 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~ 636 (740)
++.-+...|-+.+|+..|..+... -.|+...|..++..= ..+| +.-+.++++.+. +..|+..|...+.-=..
T Consensus 466 ~l~~~~e~~~~~~ark~y~~l~~l--pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~ 542 (568)
T KOG2396|consen 466 YLDWAYESGGYKKARKVYKSLQEL--PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEELP 542 (568)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhC--CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhcc
Confidence 333344444445555555444331 122233444444321 1122 334444444331 22444455544444445
Q ss_pred cCCHHHHHHHHHHhHc
Q 004644 637 HQNIKLGRIAVEKLSE 652 (740)
Q Consensus 637 ~g~~~~a~~~~~~~~~ 652 (740)
+|..+-+-.++.++++
T Consensus 543 ~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 543 LGRPENCGQIYWRAMK 558 (568)
T ss_pred CCCcccccHHHHHHHH
Confidence 5555555555555543
No 335
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=82.26 E-value=1.1e+02 Score=35.77 Aligned_cols=251 Identities=14% Similarity=0.046 Sum_probs=117.8
Q ss_pred CCCcccHHHHHHHHHcCCChHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh-hHHHHHhcCCCCCcccHHHHHHHHHh
Q 004644 105 RPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYN-EAKKLLDAMPSKNIVSWNSMLSGYTK 183 (740)
Q Consensus 105 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~l~~~~~~ 183 (740)
.+|+.+-...+..+...++.+ +...+..+...++..+....+..+.+.+... ....+...+..+|...-...+..+..
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~~ 710 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPG-FGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRA 710 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchh-HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 355555555555555544432 3333333323344444444444443332211 11111122223444333334444433
Q ss_pred CCChHHHHHHHHhcccCCcchHHHHHHHHhcCCChHHHHHHhcccCCCchhHHHHHHHHHHhcCChHH-HHHHhcc-CCC
Q 004644 184 NGEMHLASKFFEAMEERDVVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLE-ARRLFDQ-MPI 261 (740)
Q Consensus 184 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~-~~~ 261 (740)
.+..+ ...+...+..+|+..-...+.++.+.+..+. +...+..++..+....+..+...+..+. +...+.. +..
T Consensus 711 ~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D 786 (897)
T PRK13800 711 LRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGD 786 (897)
T ss_pred hccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcC
Confidence 22111 1223333344555555555556555554432 2222335666666666666666654432 2222323 345
Q ss_pred CCcchHHHHHHHHHHcCCHHHHHHHHhh-CCCCChhhHHHHHHHHhhhCCHHHHHHHHhhCCCCchhHHHHHHHHHHhcC
Q 004644 262 RNVVAWNAMIAAYVQRGQIEEAARLFIE-MPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNK 340 (740)
Q Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 340 (740)
+|...-...+.++.+.|....+...+.. +..++...-...+.++...+..+....+...+...+..+....+..+...+
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~ 866 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRWP 866 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhccC
Confidence 6666667777777777765544333333 334565555666666666665444444444444556666666666666653
Q ss_pred ChhHHHHHHhh-cCCCChhhH
Q 004644 341 RMDEANQIFDK-IGTHDVVCW 360 (740)
Q Consensus 341 ~~~~A~~~~~~-~~~~~~~~~ 360 (740)
....+...+.. +...|..+-
T Consensus 867 ~~~~a~~~L~~al~D~d~~Vr 887 (897)
T PRK13800 867 GDPAARDALTTALTDSDADVR 887 (897)
T ss_pred CCHHHHHHHHHHHhCCCHHHH
Confidence 33445555544 333444433
No 336
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=82.24 E-value=14 Score=32.29 Aligned_cols=88 Identities=13% Similarity=0.208 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 004644 572 VDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKL 650 (740)
Q Consensus 572 ~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 650 (740)
+++|+.-|++++. ++|+ .+++.|++.+|...|.+ .||... ....+++|...|+++
T Consensus 51 iedAisK~eeAL~---I~P~~hdAlw~lGnA~ts~A~l------------~~d~~~---------A~~~F~kA~~~FqkA 106 (186)
T PF06552_consen 51 IEDAISKFEEALK---INPNKHDALWCLGNAYTSLAFL------------TPDTAE---------AEEYFEKATEYFQKA 106 (186)
T ss_dssp HHHHHHHHHHHHH---H-TT-HHHHHHHHHHHHHHHHH---------------HHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---cCCchHHHHHHHHHHHHHHHhh------------cCChHH---------HHHHHHHHHHHHHHH
Confidence 3444555555543 7888 67888888888766532 222211 111245777888888
Q ss_pred HccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 004644 651 SELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQ 690 (740)
Q Consensus 651 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 690 (740)
.+.+|+|......|- ..++|-++-.++...+..
T Consensus 107 v~~~P~ne~Y~ksLe-------~~~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 107 VDEDPNNELYRKSLE-------MAAKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHH-TT-HHHHHHHH-------HHHTHHHHHHHHHHSSS-
T ss_pred HhcCCCcHHHHHHHH-------HHHhhHHHHHHHHHHHhh
Confidence 888888764333332 123566666666555543
No 337
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=82.02 E-value=36 Score=34.29 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCC----CCcchHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004644 623 NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQ----KTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689 (740)
Q Consensus 623 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 689 (740)
...+|..+...|+++|.++.|...+.++.+..+. .|.....-+.++...|+..+|...++......+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 4447899999999999999999999999887632 466777789999999999999999888876333
No 338
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.96 E-value=5.1 Score=36.53 Aligned_cols=90 Identities=16% Similarity=0.055 Sum_probs=64.2
Q ss_pred HhhhhhccCChHHHHHHHHhC---------CCCCCHHHHHH-----------HHHHHHhcCCHHHHHHHHHHhHccCCCC
Q 004644 598 MIDLLSRAGRLDEAFEMVKGM---------KIKPNAGIWGT-----------LLGACRMHQNIKLGRIAVEKLSELEPQK 657 (740)
Q Consensus 598 l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~~~~~-----------l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 657 (740)
-++-+.+.|++.||..-++.. ..+|...-|.- +.+.+...|++-++++....++..+|+|
T Consensus 184 ~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~n 263 (329)
T KOG0545|consen 184 EGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGN 263 (329)
T ss_pred hhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCch
Confidence 344455566666655443221 24455444432 2234457799999999999999999999
Q ss_pred CcchHHHHHHHHhcCCchHHHHHHHHHhhC
Q 004644 658 TSCYALLSNMHAEAGRWDEVEKVRVSMEGS 687 (740)
Q Consensus 658 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 687 (740)
..+|+..+.+++..=+-++|..-+..+.+.
T Consensus 264 vKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 264 VKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 999999999999888888999888877743
No 339
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=81.63 E-value=3.7 Score=39.30 Aligned_cols=93 Identities=18% Similarity=0.131 Sum_probs=73.9
Q ss_pred cchHHHHhhhhhccCChHHHHHHHHh-CC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHH
Q 004644 592 VEHYACMIDLLSRAGRLDEAFEMVKG-MK---IKP--NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLS 665 (740)
Q Consensus 592 ~~~~~~l~~~~~~~g~~~~A~~~~~~-~~---~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 665 (740)
..+|.-=++-|.+..++..|...+.. +. ..| +.+.|+.-..+-..-||+..++.-..+++.++|.+..+|..=+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 45666677778889999999998844 32 234 3345666665556779999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHH
Q 004644 666 NMHAEAGRWDEVEKVRVSM 684 (740)
Q Consensus 666 ~~~~~~g~~~~a~~~~~~~ 684 (740)
.++....++++|..+.+.-
T Consensus 161 kc~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 9999999988888776644
No 340
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.51 E-value=37 Score=34.70 Aligned_cols=196 Identities=17% Similarity=0.119 Sum_probs=0.0
Q ss_pred hHHHHHHhhCCCCC----------cchHHHHHHHHhcCCChHHHHHHHHhccC-------------CCcccHHHHHHHHH
Q 004644 63 NDARKLFEQMPQRN----------LVSWNSMIAGYLHNDKVKEARELFDKMFR-------------PDLFSWALMITCYT 119 (740)
Q Consensus 63 ~~A~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~~~~~~~l~~~~~ 119 (740)
++|+...++..+.+ ......++.+-.-.|++.+|++-...|.+ ..+..-..++..+.
T Consensus 299 De~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~ 378 (629)
T KOG2300|consen 299 DEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSH 378 (629)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhh
Q ss_pred cCCChHHHHHHHhhC-----CCCCChhhHHHHHHHHHhcCChhhHHHHHhcCCCCCcccHHHHHH----------HHHhC
Q 004644 120 RKGELEKARELFDLL-----PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLS----------GYTKN 184 (740)
Q Consensus 120 ~~~~~~~a~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~----------~~~~~ 184 (740)
..+.++.|...|..+ ....-...-..++..|.+.|+.+.-.++++.+-.+|..++....- ....+
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~q 458 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQ 458 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHh
Q ss_pred CChHHHHHHHHhccc---------CCcchHHHHHHHHhcCCChHHHHHHhcccC---------CCchhHHHHHHHHHHhc
Q 004644 185 GEMHLASKFFEAMEE---------RDVVSWNLMLDGYVELDDLDSAWKFFQKIP---------EQNVVSWVTMLSGYARN 246 (740)
Q Consensus 185 g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------~~~~~~~~~l~~~~~~~ 246 (740)
+++.+|...+.+..+ ...-....+...+...|+..++........ +-...+...+-..|...
T Consensus 459 n~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~ 538 (629)
T KOG2300|consen 459 NDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQAL 538 (629)
T ss_pred ccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q ss_pred CC--hHHHHHHhcc
Q 004644 247 GR--MLEARRLFDQ 258 (740)
Q Consensus 247 g~--~~~A~~~~~~ 258 (740)
|+ .+...+.|..
T Consensus 539 g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 539 GEKGNEMENEAFRK 552 (629)
T ss_pred CcchhhHHHHHHHH
No 341
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=81.14 E-value=1.6e+02 Score=37.11 Aligned_cols=112 Identities=9% Similarity=0.079 Sum_probs=71.1
Q ss_pred HHHHHHHhcCChhHHHHHHhhc----CCC--ChhhHHHHHHHHHHcCCHHHHHHHHHh-cccCCHHHHHHHHHHHHccCC
Q 004644 331 AMISGYVQNKRMDEANQIFDKI----GTH--DVVCWNVMIKGYAQCGRMDEAINLFRQ-MVNKDIVTWNTMIAGYAQIRQ 403 (740)
Q Consensus 331 ~l~~~~~~~~~~~~A~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 403 (740)
.++.+-.+++.+..|.-.++.- .+. ....+..+...|...+++|....+... ...++. ...+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 4566777888888888888773 111 122344445577777877776666653 222332 234455666788
Q ss_pred HHHHHHHHHhh-CCCCC-eecHHHHHHHHHcCCChHHHHHHHHH
Q 004644 404 MDDAVKIFEEM-GKRRN-TVSWNALISGFLQNEFHLDALKIFVL 445 (740)
Q Consensus 404 ~~~A~~~~~~~-~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~ 445 (740)
+..|...|+.+ +..|+ ...++.++......+.+...+...+-
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg 1508 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDG 1508 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcc
Confidence 88999999888 33343 56677777777777777766664433
No 342
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=81.10 E-value=1.2e+02 Score=35.45 Aligned_cols=156 Identities=10% Similarity=0.038 Sum_probs=74.0
Q ss_pred hCCCCChhhHHHHHHHHhhhCCHHHHHHHHhhCCCCchhHHHHHHHHHHhcCChhH-HHHHHhh-cCCCChhhHHHHHHH
Q 004644 289 EMPERNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDE-ANQIFDK-IGTHDVVCWNVMIKG 366 (740)
Q Consensus 289 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~-~~~~~~~~~~~l~~~ 366 (740)
.+..+|+..-...+.++...+..+ .+.......+..+....+..+...+.... +...+.. +..+|+.+-...+.+
T Consensus 722 ~L~D~d~~VR~~Av~aL~~~~~~~---~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~a 798 (897)
T PRK13800 722 ALGDPDHRVRIEAVRALVSVDDVE---SVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAA 798 (897)
T ss_pred HhcCCCHHHHHHHHHHHhcccCcH---HHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHH
Confidence 333455544444444444443322 22223334445555555555555443322 2222222 334566666666667
Q ss_pred HHHcCCHHHHHHHHHhcc-cCCHHHHHHHHHHHHccCCHHHHHHHHHhhCCCCCeecHHHHHHHHHcCCChHHHHHHHHH
Q 004644 367 YAQCGRMDEAINLFRQMV-NKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVL 445 (740)
Q Consensus 367 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 445 (740)
+.+.|....+...+..++ .++...-...+.++...+. .++...+-.+...++...-...+.++.+......+...+..
T Consensus 799 Lg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~ 877 (897)
T PRK13800 799 LAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDALTT 877 (897)
T ss_pred HHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 777666544433333333 3455455555555655554 33444444443455555444555555554333455555555
Q ss_pred HHH
Q 004644 446 MTQ 448 (740)
Q Consensus 446 m~~ 448 (740)
...
T Consensus 878 al~ 880 (897)
T PRK13800 878 ALT 880 (897)
T ss_pred HHh
Confidence 444
No 343
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.87 E-value=22 Score=29.99 Aligned_cols=63 Identities=17% Similarity=0.146 Sum_probs=35.1
Q ss_pred cchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 004644 569 VGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGMKIKP-NAGIWGTLLGAC 634 (740)
Q Consensus 569 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~ 634 (740)
.++.+++..++..|.- +.|+ .+.-..-+..+...|+|++|..+++.+...+ ....-..|+..|
T Consensus 23 ~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 23 SADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred cCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 5666666666666653 4454 3333344455677777777777777765333 333333444444
No 344
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.86 E-value=3.3 Score=25.73 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=21.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004644 522 ISWNSLIAGYAINGNATEAIKLFEEMVM 549 (740)
Q Consensus 522 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 549 (740)
.+++.+...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3577788888888888888888887664
No 345
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.45 E-value=14 Score=37.42 Aligned_cols=121 Identities=17% Similarity=0.224 Sum_probs=63.5
Q ss_pred hcCChHHHHH-HHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHH
Q 004644 533 INGNATEAIK-LFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEA 611 (740)
Q Consensus 533 ~~g~~~~A~~-~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 611 (740)
..|+...|-+ ++..+....-.|+.+...+.+ ..+.|+++.+...+...... +-....+..|++..+...|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHH
Confidence 4566555543 344444443455555544444 56777777777776655432 222244556677777777777777
Q ss_pred HHHHHhCC-CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCC
Q 004644 612 FEMVKGMK-IK-PNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK 657 (740)
Q Consensus 612 ~~~~~~~~-~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 657 (740)
......|- .+ .++.+...........|-++++....++++.++|..
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 76665552 11 122222222222334455566666666666665544
No 346
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.20 E-value=8.6 Score=29.72 Aligned_cols=59 Identities=17% Similarity=0.302 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHh
Q 004644 539 EAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMI 599 (740)
Q Consensus 539 ~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 599 (740)
+...-++.+....+.|++....+.+.||-+.+++.-|.++|+.++.+-+ +....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHH
Confidence 5556666677777889999999999999999999999999998887633 3333666654
No 347
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.15 E-value=11 Score=28.90 Aligned_cols=62 Identities=16% Similarity=0.302 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHh
Q 004644 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMI 599 (740)
Q Consensus 536 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 599 (740)
+.-++.+-++.+....+.|++....+.+.||-+.+++.-|+++|+..+.+-+. ....|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 34456666777777778899999999999999999999999999987754322 333455443
No 348
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.49 E-value=13 Score=35.34 Aligned_cols=99 Identities=13% Similarity=0.147 Sum_probs=71.0
Q ss_pred CCCCChhHHHHHHHHhhccCCHHHHHHHhcccC-CCCc-----chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH
Q 004644 485 GYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD-PVDV-----ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVT 558 (740)
Q Consensus 485 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 558 (740)
|.+....+...+++.-....+++++...+-++. .++. .+-.+.+..+ ..=++++++.++..=++.|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 445555566667777777788888888776654 2211 1111222222 23467799999999999999999999
Q ss_pred HHHHHHhhcccchHHHHHHHHHHhhh
Q 004644 559 FIGVLSACSHVGLVDGGLKLFECMTE 584 (740)
Q Consensus 559 ~~~ll~a~~~~g~~~~a~~~~~~~~~ 584 (740)
++.+++.+.+.+++.+|.++...|..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999999888777665
No 349
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=79.36 E-value=35 Score=34.46 Aligned_cols=56 Identities=11% Similarity=0.020 Sum_probs=45.5
Q ss_pred HHHHHhcCCHHHHHHHHHHhHccCCC-CCcchHHHHHHHH-hcCCchHHHHHHHHHhh
Q 004644 631 LGACRMHQNIKLGRIAVEKLSELEPQ-KTSCYALLSNMHA-EAGRWDEVEKVRVSMEG 686 (740)
Q Consensus 631 ~~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 686 (740)
+..+.+.|-+..|.+..+-++.++|. ||-.-....+.|+ +.++++--.++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 34567889999999999999999999 8877777777777 67888877777776654
No 350
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=78.52 E-value=10 Score=34.76 Aligned_cols=63 Identities=19% Similarity=0.170 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHH-------HHHhHccC--CCC----CcchHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004644 626 IWGTLLGACRMHQNIKLGRIA-------VEKLSELE--PQK----TSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688 (740)
Q Consensus 626 ~~~~l~~~~~~~g~~~~a~~~-------~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 688 (740)
.+.-+.|.|+..|+-+..... ++++++.+ |.. .....++|.++.+.|++++|.+.+.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 455667777777775444444 44444433 222 3567889999999999999999999886543
No 351
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.80 E-value=3.9 Score=26.08 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004644 662 ALLSNMHAEAGRWDEVEKVRVSMEGSG 688 (740)
Q Consensus 662 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 688 (740)
..|+.+|...|+.+.|.++++.+...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468899999999999999999887544
No 352
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.30 E-value=9.1 Score=34.38 Aligned_cols=65 Identities=22% Similarity=0.231 Sum_probs=48.7
Q ss_pred HHHHhhhhhccCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCc
Q 004644 595 YACMIDLLSRAGRLDEAFEMVKG-MKIKP-NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTS 659 (740)
Q Consensus 595 ~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 659 (740)
...-+..+.+.+.+++|+...+. .+.+| |...-..|..-+...|++++|..-++-+-++.|++..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 34455667788889998887644 45566 4446667777788889999999988888889988753
No 353
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.96 E-value=3.4 Score=23.31 Aligned_cols=28 Identities=18% Similarity=0.095 Sum_probs=24.5
Q ss_pred cchHHHHHHHHhcCCchHHHHHHHHHhh
Q 004644 659 SCYALLSNMHAEAGRWDEVEKVRVSMEG 686 (740)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 686 (740)
..+..+|.+|...|++++|...++...+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4678899999999999999999987754
No 354
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=76.61 E-value=13 Score=28.40 Aligned_cols=56 Identities=16% Similarity=0.302 Sum_probs=39.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHH
Q 004644 609 DEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALL 664 (740)
Q Consensus 609 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 664 (740)
..++.-+-.+..-|++.+..+.+.+|++-+|+..|.+.++-+-...+.+...|-.+
T Consensus 27 rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 27 RRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 34444444555678889999999999999999999999997764444444445444
No 355
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=76.48 E-value=1.3e+02 Score=33.24 Aligned_cols=86 Identities=14% Similarity=0.208 Sum_probs=36.4
Q ss_pred HHHHHHcCCHHHHHHHHHh--cccCCHHHHHHHHHHHH--ccCCHHHHHHHHHhhCCCCCeecHHHHHHHHHc---CCCh
Q 004644 364 IKGYAQCGRMDEAINLFRQ--MVNKDIVTWNTMIAGYA--QIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQ---NEFH 436 (740)
Q Consensus 364 ~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~---~~~~ 436 (740)
..++.-.|+++.|++.+-+ .-..+.+.+...+.-|. +..+... ..++..-...+....+..||..|.+ ..++
T Consensus 265 f~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~-~~lls~~~~~~~~ln~arLI~~Y~~~F~~td~ 343 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSS-APLLSVDPGDPPPLNFARLIGQYTRSFEITDP 343 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT-------------------------HHHHHHHHHHTTTTT-H
T ss_pred HHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccc-cceeeecCCCCCCcCHHHHHHHHHHHHhccCH
Confidence 3455667888888888877 22223332222222111 1111111 1111111112223667788888875 5677
Q ss_pred HHHHHHHHHHHHCC
Q 004644 437 LDALKIFVLMTQEG 450 (740)
Q Consensus 437 ~~A~~~~~~m~~~~ 450 (740)
.+|+++|-.+....
T Consensus 344 ~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 344 REALQYLYLICLFK 357 (613)
T ss_dssp HHHHHHHHGGGGS-
T ss_pred HHHHHHHHHHHHcC
Confidence 78888877665443
No 356
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.10 E-value=34 Score=26.47 Aligned_cols=50 Identities=10% Similarity=0.101 Sum_probs=23.5
Q ss_pred HHccCCHHHHHHHHHhhCCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHCC
Q 004644 398 YAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEG 450 (740)
Q Consensus 398 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 450 (740)
+...|++++|..+.+... .||...|.+|.. .+.|..+++...+.+|...|
T Consensus 49 LmNrG~Yq~Al~l~~~~~-~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKLC-YPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCCC-CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 444555555555555442 444444444322 23444444444554554444
No 357
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.99 E-value=8.2 Score=36.30 Aligned_cols=59 Identities=14% Similarity=-0.064 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhh
Q 004644 628 GTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEG 686 (740)
Q Consensus 628 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 686 (740)
+-....|...|.+.+|....++++.++|-+.+.+-.|.++|+..|+--.|.+.++.+.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 33445688999999999999999999999999999999999999998888888877753
No 358
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=75.21 E-value=9.4 Score=23.11 Aligned_cols=32 Identities=9% Similarity=-0.161 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHH--HHHhHccCCCC
Q 004644 626 IWGTLLGACRMHQNIKLGRIA--VEKLSELEPQK 657 (740)
Q Consensus 626 ~~~~l~~~~~~~g~~~~a~~~--~~~~~~~~p~~ 657 (740)
.|.++...+..+|+++.|+.. ++-+..++|.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 355666667777888888888 44666666654
No 359
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=75.02 E-value=17 Score=28.19 Aligned_cols=55 Identities=20% Similarity=0.332 Sum_probs=37.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHH
Q 004644 610 EAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALL 664 (740)
Q Consensus 610 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 664 (740)
.++.-+-.+-.-|++.+..+.+.+|++-+|+..|.+.++-+-....+....|-.+
T Consensus 31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 4444444555678999999999999999999999999998876665555455544
No 360
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=74.07 E-value=1e+02 Score=31.10 Aligned_cols=134 Identities=15% Similarity=0.144 Sum_probs=73.9
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHH-------HCCC------------------CCChHHHHHH---HHhhccc
Q 004644 518 PVDVISWNSLIAGYAINGNATEAIKLFEEMV-------MEGV------------------APDPVTFIGV---LSACSHV 569 (740)
Q Consensus 518 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-------~~~~------------------~p~~~~~~~l---l~a~~~~ 569 (740)
|-.+.+.-.+...+.+.|+...|.+++++.+ ...+ .-|...|.++ +..+.+.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R 116 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR 116 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence 3444455555556666666655555555431 1111 1133344443 3456778
Q ss_pred chHHHHHHHHHHhhhhcCCcCC--cchHHHHhhhhh-ccCChHHHHHHHHhCCC--CCC------HHHHHHHHHHHHhcC
Q 004644 570 GLVDGGLKLFECMTEVYAIEPL--VEHYACMIDLLS-RAGRLDEAFEMVKGMKI--KPN------AGIWGTLLGACRMHQ 638 (740)
Q Consensus 570 g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~--~p~------~~~~~~l~~~~~~~g 638 (740)
|-+.-|.++.+-+.. +.|+ +-....+||.|+ ++++++--+++++.... ..+ ...|+..+ ++...+
T Consensus 117 G~~rTAlE~~KlLls---Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aL-A~~~l~ 192 (360)
T PF04910_consen 117 GCWRTALEWCKLLLS---LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIAL-AYFRLE 192 (360)
T ss_pred CcHHHHHHHHHHHHh---cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHH-HHHHhc
Confidence 888888888888764 5565 444455667664 77777777777765432 111 12333333 333344
Q ss_pred CH---------------HHHHHHHHHhHccCC
Q 004644 639 NI---------------KLGRIAVEKLSELEP 655 (740)
Q Consensus 639 ~~---------------~~a~~~~~~~~~~~p 655 (740)
+. +.|...+.+++...|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 193 KEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred CccccccccccccccchhHHHHHHHHHHHHhH
Confidence 44 778887777765444
No 361
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=73.73 E-value=10 Score=38.16 Aligned_cols=128 Identities=16% Similarity=0.089 Sum_probs=81.7
Q ss_pred cCCHHHH-HHHhcccC--CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHH
Q 004644 503 CGRIQNA-ELLFKDAD--PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLF 579 (740)
Q Consensus 503 ~g~~~~A-~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~ 579 (740)
.|++-.| .++|.-+. +.++.........+...|.++.+...+...... +.....+...+++.....|++++|...-
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 4666555 34454433 445555445555677789999999988876553 4455667888888889999999999998
Q ss_pred HHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 004644 580 ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM-K-IKPNAGIWGTLLGA 633 (740)
Q Consensus 580 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~ 633 (740)
.-|... .++ +.+........--..|-++++...++++ . .+|...-|-..+..
T Consensus 381 ~~~l~~-eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~ 434 (831)
T PRK15180 381 EMMLSN-EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSS 434 (831)
T ss_pred HHHhcc-ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecc
Confidence 888764 232 2222222222333457788998888776 2 23444556665554
No 362
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=73.37 E-value=4.7 Score=23.18 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHhHccCCCCCcchHHHHHH
Q 004644 638 QNIKLGRIAVEKLSELEPQKTSCYALLSNM 667 (740)
Q Consensus 638 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 667 (740)
|+.+.+..++++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999999999888877766543
No 363
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=73.06 E-value=9.2 Score=36.13 Aligned_cols=48 Identities=13% Similarity=0.143 Sum_probs=31.2
Q ss_pred HhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHH
Q 004644 635 RMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRV 682 (740)
Q Consensus 635 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 682 (740)
++.|+.+.|...++.++.+.|+++.+...+|.......+.-+|...+-
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~ 174 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYV 174 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhh
Confidence 455666677777777777777776666666666665666666665554
No 364
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=72.84 E-value=12 Score=38.88 Aligned_cols=98 Identities=16% Similarity=0.111 Sum_probs=66.2
Q ss_pred ccchHHHHHHHHHHhhhhcCCcCC--cchHHHHhhhhhccCChHHHHHHHHh-CC-CCCCHHHHHHHHHHHHhcCCHHHH
Q 004644 568 HVGLVDGGLKLFECMTEVYAIEPL--VEHYACMIDLLSRAGRLDEAFEMVKG-MK-IKPNAGIWGTLLGACRMHQNIKLG 643 (740)
Q Consensus 568 ~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~-~~-~~p~~~~~~~l~~~~~~~g~~~~a 643 (740)
-.|+...|...+..+.- ..|. -.....|+.++.+.|...+|-.++.+ +. ....+.++.++++++....|++.|
T Consensus 619 ~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 36777777777776643 4443 22345566777777777777776633 32 233455677777788777888888
Q ss_pred HHHHHHhHccCCCCCcchHHHHHHH
Q 004644 644 RIAVEKLSELEPQKTSCYALLSNMH 668 (740)
Q Consensus 644 ~~~~~~~~~~~p~~~~~~~~l~~~~ 668 (740)
++.++.+++++|+++.+-..|-.+-
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHH
Confidence 8888888888888887766665543
No 365
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=72.81 E-value=40 Score=26.49 Aligned_cols=85 Identities=20% Similarity=0.158 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004644 471 LQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVME 550 (740)
Q Consensus 471 ~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 550 (740)
.++|..|.+.+...+- ....+...-+..+.+.|++++|...=.....||...|-++. -.+.|-.+++...+.++...
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHhC
Confidence 3444444444444332 12222223334456677777774444445567777776663 35667777777777766655
Q ss_pred CCCCChHHH
Q 004644 551 GVAPDPVTF 559 (740)
Q Consensus 551 ~~~p~~~~~ 559 (740)
| .|....|
T Consensus 99 g-~~~~q~F 106 (116)
T PF09477_consen 99 G-SPELQAF 106 (116)
T ss_dssp S-SHHHHHH
T ss_pred C-CHHHHHH
Confidence 4 4444343
No 366
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=72.79 E-value=95 Score=30.06 Aligned_cols=60 Identities=10% Similarity=0.106 Sum_probs=32.2
Q ss_pred HHHHHHHHHHccCCHHH---HHHHHHhh-CCCCC-eecHHHHHHHHHcCCChHHHHHHHHHHHHC
Q 004644 390 TWNTMIAGYAQIRQMDD---AVKIFEEM-GKRRN-TVSWNALISGFLQNEFHLDALKIFVLMTQE 449 (740)
Q Consensus 390 ~~~~l~~~~~~~~~~~~---A~~~~~~~-~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 449 (740)
+...++.+|...+..+. |..+++.+ ..-|+ +..+..-+..+.+.++.+.+.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 45566677776665443 44444444 11222 333333444445567777777777777665
No 367
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=72.75 E-value=64 Score=28.12 Aligned_cols=88 Identities=20% Similarity=0.283 Sum_probs=46.8
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcc--cchHHHHHHHHHHhhhhcCCcCCcchH
Q 004644 518 PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH--VGLVDGGLKLFECMTEVYAIEPLVEHY 595 (740)
Q Consensus 518 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~ 595 (740)
+++...+..++..+.+.|++. .+..++..++-||+......+-.... ..-..-|...+.++.. ++
T Consensus 26 ~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~---------~~ 92 (167)
T PF07035_consen 26 PVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT---------AY 92 (167)
T ss_pred CCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh---------hH
Confidence 344445555666666666543 33445555566665544333321111 1122333444443321 34
Q ss_pred HHHhhhhhccCChHHHHHHHHhC
Q 004644 596 ACMIDLLSRAGRLDEAFEMVKGM 618 (740)
Q Consensus 596 ~~l~~~~~~~g~~~~A~~~~~~~ 618 (740)
..+++.+...|++-+|..+.++.
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 66777788888888888888775
No 368
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=71.89 E-value=17 Score=32.47 Aligned_cols=73 Identities=11% Similarity=0.066 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCC--cCCcchHHHHhhhhhccCChHHHH
Q 004644 539 EAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAI--EPLVEHYACMIDLLSRAGRLDEAF 612 (740)
Q Consensus 539 ~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 612 (740)
+|...|-++...+.--+ ......+..+.-..+.++++.++.++.+.++- +++++.+..|+..+.+.|+++.|.
T Consensus 124 ~A~~~fL~~E~~~~l~t-~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 124 EALRRFLQLEGTPELET-AELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHcCCCCCCC-HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 46666666655543322 22223333344455666666666665553221 344555666666666666666553
No 369
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.85 E-value=4.2 Score=29.67 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=23.2
Q ss_pred ccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHH
Q 004644 568 HVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEM 614 (740)
Q Consensus 568 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 614 (740)
+.+..++|+..+....+...-.|+ ..++.+++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555443222222 33445555566666666655544
No 370
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.66 E-value=1.6e+02 Score=33.51 Aligned_cols=126 Identities=12% Similarity=0.205 Sum_probs=72.3
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHhcccCC--cchHHHHHHHHhcCCChHHHHHHhcccCCCchhHHHHHHHHHHhcCChH
Q 004644 173 SWNSMLSGYTKNGEMHLASKFFEAMEERD--VVSWNLMLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRML 250 (740)
Q Consensus 173 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 250 (740)
-|..|+..|...|+.++|++++......+ ..... ...++.-+++++....++.........+-. ..+.+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~--------~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl-~~~p~ 576 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQ--------LDGLEKIIEYLKKLGAENLDLILEYADWVL-NKNPE 576 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccch--------hhhHHHHHHHHHHhcccchhHHHHHhhhhh-ccCch
Confidence 48889999999999999999999887522 11110 112334555555555554443333333332 34566
Q ss_pred HHHHHhccCCCCCcchH-HHHHHHHHHcCCHHHHHHHHhhCCC----CChhhHHHHHHHHhh
Q 004644 251 EARRLFDQMPIRNVVAW-NAMIAAYVQRGQIEEAARLFIEMPE----RNPVSWTTMIDGYVR 307 (740)
Q Consensus 251 ~A~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~ 307 (740)
...++|..-......+. ...+-.|.....++-++..++.+.. ++..-.+.++..|..
T Consensus 577 ~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 577 AGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 77777765111011111 1233345677777888888888773 345556666666553
No 371
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=71.14 E-value=12 Score=28.99 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=38.0
Q ss_pred HhcCCHHHHHHHHHHhHccCCCCC---------cchHHHHHHHHhcCCchHHHHHHHHHhh
Q 004644 635 RMHQNIKLGRIAVEKLSELEPQKT---------SCYALLSNMHAEAGRWDEVEKVRVSMEG 686 (740)
Q Consensus 635 ~~~g~~~~a~~~~~~~~~~~p~~~---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 686 (740)
...||+..|...+.+.++...... .+...++.++...|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 467888888888777776543322 2346788889999999999998887653
No 372
>PRK11619 lytic murein transglycosylase; Provisional
Probab=70.94 E-value=1.7e+02 Score=32.34 Aligned_cols=74 Identities=8% Similarity=-0.046 Sum_probs=40.4
Q ss_pred hhHHHHHHhhcCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHhccc---CCHHHHHHHHHHHHccCCHHHHHHHHHhhC
Q 004644 342 MDEANQIFDKIGTH--DVVCWNVMIKGYAQCGRMDEAINLFRQMVN---KDIVTWNTMIAGYAQIRQMDDAVKIFEEMG 415 (740)
Q Consensus 342 ~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 415 (740)
..+|...++...+. +.....--+..-.+.++++.+...+..|.. ....-..=++.++...|+.++|...|+.+.
T Consensus 295 ~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 295 TDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred CHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34444444443221 333333334444467777777777777643 222233345566566777788877777773
No 373
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=70.70 E-value=7.9 Score=35.02 Aligned_cols=54 Identities=13% Similarity=0.133 Sum_probs=31.9
Q ss_pred hcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCCC
Q 004644 636 MHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGA 689 (740)
Q Consensus 636 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 689 (740)
..+|.+.+-+.+.+++++.|+....|..++....+.|+.+.|.+-+++..+..+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 345555556666666666666666666666666666666666666655554443
No 374
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.64 E-value=1.6e+02 Score=31.92 Aligned_cols=113 Identities=17% Similarity=0.165 Sum_probs=59.6
Q ss_pred HHHHHHHHHhccc-CCHHHHHHHHHHH-----HccCCHHHHHHHHHhhCC-------CCCeecHHHHHHHHHcCC-----
Q 004644 373 MDEAINLFRQMVN-KDIVTWNTMIAGY-----AQIRQMDDAVKIFEEMGK-------RRNTVSWNALISGFLQNE----- 434 (740)
Q Consensus 373 ~~~A~~~~~~~~~-~~~~~~~~l~~~~-----~~~~~~~~A~~~~~~~~~-------~~~~~~~~~li~~~~~~~----- 434 (740)
...|...++...+ .+......++.+| ....|.+.|...|+..-. .-.......+...|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~ 307 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKI 307 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccc
Confidence 5677777777654 3444444444333 345678888888877632 224445666666666643
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHhCC
Q 004644 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAH-LAALQLGRQIHHLAIKSGY 486 (740)
Q Consensus 435 ~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~-~~~~~~a~~~~~~~~~~g~ 486 (740)
+...|+.++.+....|. |+...+...+.-... -.+...|.+++..+.+.|.
T Consensus 308 d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~ 359 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH 359 (552)
T ss_pred cHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC
Confidence 44557777776666553 333222222211111 1234455555555555543
No 375
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.07 E-value=6.6 Score=28.69 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=33.7
Q ss_pred hcCCHHHHHHHHHHhHccCCCCCcchHHHH---HHHHhcCCchHHHHH
Q 004644 636 MHQNIKLGRIAVEKLSELEPQKTSCYALLS---NMHAEAGRWDEVEKV 680 (740)
Q Consensus 636 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~---~~~~~~g~~~~a~~~ 680 (740)
..++.+.|+...+++++..++.+.-+..|| .+|+..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888887776666554 467778888877764
No 376
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=69.69 E-value=22 Score=29.30 Aligned_cols=70 Identities=14% Similarity=0.132 Sum_probs=36.0
Q ss_pred CCChHHHHHHHHhhcccc---hHHHHHHHHHHhhhhcCCcCC--cchHHHHhhhhhccCChHHHHHHHHhC-CCCCCH
Q 004644 553 APDPVTFIGVLSACSHVG---LVDGGLKLFECMTEVYAIEPL--VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKPNA 624 (740)
Q Consensus 553 ~p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 624 (740)
.|...+-..+..+..++. ++.+++.+++.+.+. -.|+ .+....|.-.+.|.|+++++..+++.+ ..+||.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 444444444555554433 455666666666541 2222 333334555566667777776666654 334443
No 377
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.17 E-value=1e+02 Score=28.93 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHhccc-----CCHH----HHHHHHHHHHccCCHHHHHHHHHhh
Q 004644 358 VCWNVMIKGYAQCGRMDEAINLFRQMVN-----KDIV----TWNTMIAGYAQIRQMDDAVKIFEEM 414 (740)
Q Consensus 358 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~ 414 (740)
...|++++--....+.+.-...|+.-++ .+.. |-.-|...|...+.+..-.+++.++
T Consensus 106 KsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqL 171 (440)
T KOG1464|consen 106 KSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQL 171 (440)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHH
Confidence 3455555554444444444444443321 1211 2244666677777777766666665
No 378
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.45 E-value=15 Score=37.27 Aligned_cols=128 Identities=17% Similarity=0.060 Sum_probs=78.3
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHhcCC---CC---------CcccHHHHHHHHHhCCChHHHHHHHHhcccCCcchHHH
Q 004644 140 TACWNAMVAGYAKIGNYNEAKKLLDAMP---SK---------NIVSWNSMLSGYTKNGEMHLASKFFEAMEERDVVSWNL 207 (740)
Q Consensus 140 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 207 (740)
+.....-.+.+.-.|++.+|.+++-..- .+ ....||.|+..+.+.|.+..+..+|.++.+
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~-------- 311 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALR-------- 311 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHH--------
Confidence 3333444566778899999988886542 11 223578888888888888888888887764
Q ss_pred HHHHHhcCCChHHHHHHhcccCCCchhHHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHc
Q 004644 208 MLDGYVELDDLDSAWKFFQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMP---IRNVVAWNAMIAAYVQR 277 (740)
Q Consensus 208 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 277 (740)
..|.++..--.....+..............+-.|...|+.-.|.+.|.+.. ..++..|-.|..+|.-.
T Consensus 312 --N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 312 --NSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred --HHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 011110000000000000012333455566777888899988888887765 57888898888887654
No 379
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=68.18 E-value=1.1e+02 Score=29.13 Aligned_cols=83 Identities=22% Similarity=0.215 Sum_probs=41.9
Q ss_pred CChhHHHHHHHHhhccCCHHHHHHHhcccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhc
Q 004644 488 NDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567 (740)
Q Consensus 488 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~ 567 (740)
-++.....+...|.+.|++.+|+..|-....++...+..++.-....|...++ +...-.+++ -+.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHH
Confidence 36778888899999999999987776543332222222222222222222222 111112222 345
Q ss_pred ccchHHHHHHHHHHhhhh
Q 004644 568 HVGLVDGGLKLFECMTEV 585 (740)
Q Consensus 568 ~~g~~~~a~~~~~~~~~~ 585 (740)
..|+...|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 567778788777666653
No 380
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=67.91 E-value=83 Score=27.45 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=23.4
Q ss_pred CCCCCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004644 415 GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL 462 (740)
Q Consensus 415 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l 462 (740)
+.+++...+..++..+.+.|++..- .++.+.++-||+..+...+
T Consensus 24 ~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~L 67 (167)
T PF07035_consen 24 NIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQL 67 (167)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHH
Confidence 3445555566666666666654433 3333555666665555444
No 381
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=67.81 E-value=19 Score=33.86 Aligned_cols=80 Identities=16% Similarity=0.070 Sum_probs=62.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCcccEEEEcCEEEEE
Q 004644 628 GTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTF 707 (740)
Q Consensus 628 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f 707 (740)
..+-+++...++.+.|..+.++.+.++|++|.-...-|.+|.+.|-..-|.+-+....+.-
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~------------------- 245 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC------------------- 245 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC-------------------
Confidence 4444567788999999999999999999999999999999999999999998887533221
Q ss_pred ecCCCCCCChHHHHHHHHHHHHH
Q 004644 708 LSGDPKQCRTAEICNTLKTLAAQ 730 (740)
Q Consensus 708 ~~~~~~~~~~~~~~~~l~~l~~~ 730 (740)
...|.+.-|...+.++..+
T Consensus 246 ----P~~~~a~~ir~~l~~l~~~ 264 (269)
T COG2912 246 ----PDDPIAEMIRAQLLELRQE 264 (269)
T ss_pred ----CCchHHHHHHHHHHHHHHH
Confidence 2345667777777777643
No 382
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=67.32 E-value=1.6e+02 Score=30.59 Aligned_cols=62 Identities=16% Similarity=0.241 Sum_probs=36.6
Q ss_pred CCcccHHHHHHHHHcCCChHHHHHHHhhC--CCCCChhhHHHHHHHHHhcC-ChhhHHHHHhcCC
Q 004644 106 PDLFSWALMITCYTRKGELEKARELFDLL--PNKEDTACWNAMVAGYAKIG-NYNEAKKLLDAMP 167 (740)
Q Consensus 106 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~ 167 (740)
.|+..|...+..|.+.+.+.+...+|..+ .+|.++.+|..-+.-...-+ +++.|+.+|.+..
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 46666777777776666677777777766 34445555544333333322 2677777776655
No 383
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=66.27 E-value=8.3 Score=36.42 Aligned_cols=61 Identities=16% Similarity=0.251 Sum_probs=38.2
Q ss_pred hccCChHHHHHHHHh-CCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHH
Q 004644 603 SRAGRLDEAFEMVKG-MKIKPNAG-IWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYAL 663 (740)
Q Consensus 603 ~~~g~~~~A~~~~~~-~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 663 (740)
.+.|+.++|..+|+. +...|+.. +..-+......++++-+|...|-+++.++|.+.++.++
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 456777777777643 34455333 44444444455677777777777888888877665543
No 384
>PRK11619 lytic murein transglycosylase; Provisional
Probab=66.08 E-value=2.2e+02 Score=31.61 Aligned_cols=190 Identities=9% Similarity=-0.068 Sum_probs=103.2
Q ss_pred ChhHHHHHHHHhhccCCHHHHHHHhcccCC--CC-cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHh
Q 004644 489 DLFVGNSLITMYAKCGRIQNAELLFKDADP--VD-VISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSA 565 (740)
Q Consensus 489 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a 565 (740)
+..+...-+......++++.+...+..+.+ .+ ..-..=++.++...|+.++|...|+++.. .. +|-+++.+
T Consensus 311 ~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa 384 (644)
T PRK11619 311 STSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAA 384 (644)
T ss_pred CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHH
Confidence 344445555566688999999888888762 22 22233466777778999999999999743 22 34443321
Q ss_pred hcccchHHHHHHHH--HHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004644 566 CSHVGLVDGGLKLF--ECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLG 643 (740)
Q Consensus 566 ~~~~g~~~~a~~~~--~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 643 (740)
.+.|..-. ...- ..-...+...| -..-+..+...|+..+|...+..+....+......+.......|..+.+
T Consensus 385 -~~Lg~~~~-~~~~~~~~~~~~~~~~~----~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~a 458 (644)
T PRK11619 385 -QRLGEEYP-LKIDKAPKPDSALTQGP----EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLS 458 (644)
T ss_pred -HHcCCCCC-CCCCCCCchhhhhccCh----HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHH
Confidence 11221100 0000 00000000011 1223456677889888887776653345555556666666788888888
Q ss_pred HHHHHHhHccC---CCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCCCc
Q 004644 644 RIAVEKLSELE---PQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQ 690 (740)
Q Consensus 644 ~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 690 (740)
+.+..+....+ -..|..|......+...-..+.++-.--...|.+..
T Consensus 459 i~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~ 508 (644)
T PRK11619 459 VQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWN 508 (644)
T ss_pred HHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCC
Confidence 87776543211 122444555555555555666655432333455554
No 385
>PF13934 ELYS: Nuclear pore complex assembly
Probab=65.08 E-value=86 Score=29.17 Aligned_cols=102 Identities=15% Similarity=0.191 Sum_probs=59.7
Q ss_pred HHHHHHHHh--cCCChHHHHHHHHhccCCCc-ccH-HHHHHHHHcCCChHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcC
Q 004644 80 WNSMIAGYL--HNDKVKEARELFDKMFRPDL-FSW-ALMITCYTRKGELEKARELFDLLPNKED-TACWNAMVAGYAKIG 154 (740)
Q Consensus 80 ~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~-~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~l~~~~~~~g 154 (740)
+...+++++ ..+++++|+..+-.. .. .++ .-++.++...|+...|+.++..++-+.. ......+... ..++
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~ 154 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANG 154 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcC
Confidence 445555544 456777777766332 21 122 2466777777888888888888743333 3333333333 6678
Q ss_pred ChhhHHHHHhcCCCCC-cccHHHHHHHHHhCC
Q 004644 155 NYNEAKKLLDAMPSKN-IVSWNSMLSGYTKNG 185 (740)
Q Consensus 155 ~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~g 185 (740)
.+.+|...-+....+. ...|..++..+....
T Consensus 155 ~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 155 LVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred CHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 8888888777665432 335666666665433
No 386
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=64.45 E-value=1.5e+02 Score=29.05 Aligned_cols=146 Identities=11% Similarity=0.086 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHhhcc--c----chHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHH
Q 004644 537 ATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH--V----GLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDE 610 (740)
Q Consensus 537 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~--~----g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 610 (740)
+++.+.+++.|.+.|++-+..++.+....... . -...++..+|+.|++.|+.--+.+-|...+-+-.+.+..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e~ 157 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHHH
Confidence 45667888999999999888777663332222 2 35678999999999987655444333322222334444433
Q ss_pred ----HHHHHHhC---CCCC-CHHHHHHHHHHHHh-cCC--HHHHHHHHHHhHccCCC-CCcchHHHHHHHHhcCCchHHH
Q 004644 611 ----AFEMVKGM---KIKP-NAGIWGTLLGACRM-HQN--IKLGRIAVEKLSELEPQ-KTSCYALLSNMHAEAGRWDEVE 678 (740)
Q Consensus 611 ----A~~~~~~~---~~~p-~~~~~~~l~~~~~~-~g~--~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~ 678 (740)
...+++.+ .+.+ |...+.+-+-+... ..+ ...+...++.+-+-.=. ....|-.+|-+-.-.+..++..
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~ 237 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIV 237 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHHH
Confidence 33344333 4444 44444333333322 211 22444444444332211 1234555654443344442444
Q ss_pred HHHH
Q 004644 679 KVRV 682 (740)
Q Consensus 679 ~~~~ 682 (740)
+-..
T Consensus 238 ~~i~ 241 (297)
T PF13170_consen 238 EEIK 241 (297)
T ss_pred HHHH
Confidence 3333
No 387
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=64.19 E-value=35 Score=32.11 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=32.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChHH-------HHHHHHhhcccchHHHHHH
Q 004644 528 IAGYAINGNATEAIKLFEEMVMEGVAPDPVT-------FIGVLSACSHVGLVDGGLK 577 (740)
Q Consensus 528 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-------~~~ll~a~~~~g~~~~a~~ 577 (740)
.+-....+++++|+..+.+....|+..|..+ ...+...|...|+...-.+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 3445667888999999999998887766544 3334444555555444333
No 388
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=62.32 E-value=24 Score=29.69 Aligned_cols=70 Identities=14% Similarity=0.015 Sum_probs=48.1
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHH
Q 004644 607 RLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEK 679 (740)
Q Consensus 607 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 679 (740)
.-+.|.++++-|+- ..............|++..|..+.+.++..+|+|..+-...+++|.+.|.-.+...
T Consensus 56 p~~~A~~~v~l~GG---~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~~~ 125 (141)
T PF14863_consen 56 PEEEAKRYVELAGG---ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSENAN 125 (141)
T ss_dssp HHHHHHHHHHHTTC---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SSHH
T ss_pred hHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccCHH
Confidence 34567777777751 22223333456678999999999999999999999999999999888776555443
No 389
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=61.90 E-value=1.4e+02 Score=28.43 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=29.9
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHhhhhhhhH
Q 004644 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTL-------ACALSACAHLAALQ 472 (740)
Q Consensus 426 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-------~~~l~~~~~~~~~~ 472 (740)
+..-..+.++.++|+..+.+....|+..|..+. ..+...+.+.|+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~ 62 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYC 62 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcc
Confidence 344456677788888888888888877765543 33444444555443
No 390
>PRK10941 hypothetical protein; Provisional
Probab=61.23 E-value=36 Score=32.56 Aligned_cols=67 Identities=7% Similarity=-0.006 Sum_probs=49.3
Q ss_pred HHHhhhhhccCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchH
Q 004644 596 ACMIDLLSRAGRLDEAFEMVKGM-KIKPN-AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYA 662 (740)
Q Consensus 596 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 662 (740)
+.+-.+|.+.++++.|+...+.+ ...|+ +.-|.--+-.|.+-|....|..-++..++..|++|.+-.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 44566778888888888888776 34554 334666666677888888888888888888888886543
No 391
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=60.92 E-value=1.3e+02 Score=27.40 Aligned_cols=125 Identities=16% Similarity=0.122 Sum_probs=71.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC----cchHHHH
Q 004644 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAP-DPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL----VEHYACM 598 (740)
Q Consensus 524 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l 598 (740)
.+..++.+.+.+...+++...+.-++. +| |..+-..++..++-.|++++|..-++..-+ +.|+ ...|..+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~l 78 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRHL 78 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHHH
Confidence 344566677777888888887776664 44 344555667777788888888877776644 3443 3344444
Q ss_pred hhhhhccCChHHHH-HHHHh--CCCCC--CHHHHHHH-HHH--HHhcCCHHHHHHHHHHhHccCCCCCcc
Q 004644 599 IDLLSRAGRLDEAF-EMVKG--MKIKP--NAGIWGTL-LGA--CRMHQNIKLGRIAVEKLSELEPQKTSC 660 (740)
Q Consensus 599 ~~~~~~~g~~~~A~-~~~~~--~~~~p--~~~~~~~l-~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~ 660 (740)
+. -+.+. ++|.. .|.-+ +...|... +.+ |...|.-+.....-+.+++--|..++.
T Consensus 79 ir-------~ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG~ 141 (273)
T COG4455 79 IR-------CEAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIGH 141 (273)
T ss_pred HH-------HHHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCcc
Confidence 42 22222 23322 22111 22345443 333 344455666677778888887776543
No 392
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=60.88 E-value=2.2e+02 Score=31.51 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=20.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcc---cCCHHHHHHHHHHHHc
Q 004644 362 VMIKGYAQCGRMDEAINLFRQMV---NKDIVTWNTMIAGYAQ 400 (740)
Q Consensus 362 ~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 400 (740)
.++--+.|+|++++|.++..... +.....+...+..|..
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHh
Confidence 45566777777777777773332 2333344445555544
No 393
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=60.25 E-value=79 Score=32.24 Aligned_cols=54 Identities=9% Similarity=0.033 Sum_probs=34.7
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChH--HHHHHHHhh--cccchHHHHHHHHHHhhh
Q 004644 530 GYAINGNATEAIKLFEEMVMEGVAPDPV--TFIGVLSAC--SHVGLVDGGLKLFECMTE 584 (740)
Q Consensus 530 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~a~--~~~g~~~~a~~~~~~~~~ 584 (740)
.+...+++..|.++|+.+... ++++.. .+..+..+| ...-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344678888888888888876 555554 233333333 335667788888887655
No 394
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=58.89 E-value=2.2e+02 Score=29.35 Aligned_cols=19 Identities=16% Similarity=0.045 Sum_probs=7.7
Q ss_pred HHHHHhhhhhhhHHHHHHH
Q 004644 460 CALSACAHLAALQLGRQIH 478 (740)
Q Consensus 460 ~~l~~~~~~~~~~~a~~~~ 478 (740)
..+.++...|+......+.
T Consensus 257 ~a~~AlG~lg~p~av~~L~ 275 (410)
T TIGR02270 257 EALRAVGLVGDVEAAPWCL 275 (410)
T ss_pred HHHHHHHHcCCcchHHHHH
Confidence 3344444444444333333
No 395
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=58.24 E-value=86 Score=29.00 Aligned_cols=84 Identities=10% Similarity=-0.113 Sum_probs=59.2
Q ss_pred HhhccCCHHHHHHHhcccC--CCCc-chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHH-HHHHhhcccchHHH
Q 004644 499 MYAKCGRIQNAELLFKDAD--PVDV-ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFI-GVLSACSHVGLVDG 574 (740)
Q Consensus 499 ~~~~~g~~~~A~~~~~~~~--~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~ll~a~~~~g~~~~ 574 (740)
-|....+++.|...+.+.. .|.+ .-|+.-+.++.+..+++.+.+--++.++ +.||.+--. .+..+...+..+++
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccH
Confidence 3555667888888777654 4444 4466778888888899888888777777 688877433 34445566777888
Q ss_pred HHHHHHHhhh
Q 004644 575 GLKLFECMTE 584 (740)
Q Consensus 575 a~~~~~~~~~ 584 (740)
|+..+.+..+
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 8888887744
No 396
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=58.16 E-value=24 Score=22.56 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=12.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHC
Q 004644 426 LISGFLQNEFHLDALKIFVLMTQE 449 (740)
Q Consensus 426 li~~~~~~~~~~~A~~~~~~m~~~ 449 (740)
+..+|...|+.+.|..++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344555555555555555555543
No 397
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=57.82 E-value=1e+02 Score=32.47 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=33.2
Q ss_pred HHHHHhhccCCHHHHHHHhcccCC--CCcc---hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004644 495 SLITMYAKCGRIQNAELLFKDADP--VDVI---SWNSLIAGYAINGNATEAIKLFEEMVME 550 (740)
Q Consensus 495 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 550 (740)
.|+.-|.+++++++|..++..|.= -... +.+.+++.+.+..-.++....++.++..
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 466678899999999999988771 1122 2333344444444444555555555543
No 398
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=56.61 E-value=2.5e+02 Score=29.08 Aligned_cols=22 Identities=5% Similarity=-0.257 Sum_probs=9.6
Q ss_pred CCcchHHHHHHHHhcCCChHHH
Q 004644 200 RDVVSWNLMLDGYVELDDLDSA 221 (740)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~~~a 221 (740)
++.......+.++...++....
T Consensus 98 ~~~~vr~aaa~ALg~i~~~~a~ 119 (410)
T TIGR02270 98 GPEGLCAGIQAALGWLGGRQAE 119 (410)
T ss_pred CCHHHHHHHHHHHhcCCchHHH
Confidence 3333444444444444444333
No 399
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=56.47 E-value=89 Score=28.96 Aligned_cols=105 Identities=12% Similarity=0.129 Sum_probs=54.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCC-CChH--HHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCC
Q 004644 531 YAINGNATEAIKLFEEMVMEGVA-PDPV--TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGR 607 (740)
Q Consensus 531 ~~~~g~~~~A~~~~~~m~~~~~~-p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 607 (740)
..-.|+++.|+++.+-+++.|.+ |+.. ++-+++ |.++++.....+.-...++.|....
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~v-----------aeev~~~A~~~~~ag~~~e~~~~~~-------- 153 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFV-----------AEEVANAALKAASAGESVEPYFLRV-------- 153 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHH-----------HHHHHHHHHHHHHcCCCCChHHHHH--------
Confidence 35679999999999999998844 4432 222222 2233333222211112222221110
Q ss_pred hHHHHHHHHhCCCCCCHH---HHHHHHHHHH---------hcCCHHHHHHHHHHhHccCCCCC
Q 004644 608 LDEAFEMVKGMKIKPNAG---IWGTLLGACR---------MHQNIKLGRIAVEKLSELEPQKT 658 (740)
Q Consensus 608 ~~~A~~~~~~~~~~p~~~---~~~~l~~~~~---------~~g~~~~a~~~~~~~~~~~p~~~ 658 (740)
...+.... .-||.+ .+..++..+. ..++...|...++++++++|+..
T Consensus 154 ---~~~l~~~~-dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 154 ---FLDLTTEW-DMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred ---HHHHHhcC-CCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 11111111 123433 3444444442 34577899999999999998753
No 400
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.84 E-value=2.3e+02 Score=28.62 Aligned_cols=24 Identities=21% Similarity=0.555 Sum_probs=11.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhc
Q 004644 360 WNVMIKGYAQCGRMDEAINLFRQM 383 (740)
Q Consensus 360 ~~~l~~~~~~~g~~~~A~~~~~~~ 383 (740)
+.-+.+-|..+|+++.|++.|.++
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~ 176 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRA 176 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhh
Confidence 334444455555555555555443
No 401
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=55.67 E-value=53 Score=33.60 Aligned_cols=109 Identities=18% Similarity=0.196 Sum_probs=60.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhcc---CC
Q 004644 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRA---GR 607 (740)
Q Consensus 531 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~ 607 (740)
+...|++.+|+..|+.++.. ..+.........+++.+++...++. +...-+++-.|. ..
T Consensus 214 ~~t~gKF~eA~~~Fr~iL~~----------i~l~vv~~~~E~~e~~eli~icrEY--------ilgl~iEl~Rr~l~~~~ 275 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSILHS----------IPLLVVESREEEDEAKELIEICREY--------ILGLSIELERRELPKDP 275 (422)
T ss_dssp HHHTT-HHHHHHHHHHHHHH----------HHC--BSSCHHHHHHHHHHHHHHHH--------HHHHHHHHHHCTS-TTT
T ss_pred HHhcCCHHHHHHHHHHHHHH----------hheeeecCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhccccc
Confidence 45679999999999988752 2222333445566666666555441 112222222222 11
Q ss_pred hH---HHH---HHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhHccCCCC
Q 004644 608 LD---EAF---EMVKGMKIKPNAG--IWGTLLGACRMHQNIKLGRIAVEKLSELEPQK 657 (740)
Q Consensus 608 ~~---~A~---~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 657 (740)
.+ ... .+|.....+|.-. ++.+-+..+.+++|+..|-...++++++.|..
T Consensus 276 ~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 276 VEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred hhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 22 122 2344445555333 56677777889999999999999999999864
No 402
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.23 E-value=58 Score=36.11 Aligned_cols=157 Identities=17% Similarity=0.197 Sum_probs=92.8
Q ss_pred HHHHHHHccCChhHHHHHHhhccCCCccchHHHHHHHHcCCChhHHHHHHhhCCCCCcchHHHHHHHHhcCCChHHHHHH
Q 004644 20 KKITQLGKSGRVEEAIKIFSQMSQKNTVTYNSMISAYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEAREL 99 (740)
Q Consensus 20 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 99 (740)
+++.-+.|.|..+-|+...+ |+..-. .....+|+++.|++.-.++. ++..|..|+..-..+|+..-|.-.
T Consensus 625 aiIaYLqKkgypeiAL~FVk-----D~~tRF---~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~ 694 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVK-----DERTRF---ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMC 694 (1202)
T ss_pred HHHHHHHhcCCcceeeeeec-----Ccchhe---eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHH
Confidence 34555556666665655443 222222 23457889988888766554 556789999999999999888888
Q ss_pred HHhccCCCcccHHHHHHHHHcCCChHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHhcCCCCCcccHHHHHH
Q 004644 100 FDKMFRPDLFSWALMITCYTRKGELEKARELFDLLPNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNIVSWNSMLS 179 (740)
Q Consensus 100 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 179 (740)
|++... |..|.-.|.-.|+.++-.+....+....|.... .....-.|+.++=.++++..-.... +|.
T Consensus 695 yQ~~kn-----fekLsfLYliTgn~eKL~Km~~iae~r~D~~~~---~qnalYl~dv~ervkIl~n~g~~~l-ayl---- 761 (1202)
T KOG0292|consen 695 YQRTKN-----FEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQ---FQNALYLGDVKERVKILENGGQLPL-AYL---- 761 (1202)
T ss_pred HHHhhh-----hhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHH---HHHHHHhccHHHHHHHHHhcCcccH-HHH----
Confidence 877644 333333455667777777776665333333221 1112235677777777765433221 221
Q ss_pred HHHhCCChHHHHHHHHhccc
Q 004644 180 GYTKNGEMHLASKFFEAMEE 199 (740)
Q Consensus 180 ~~~~~g~~~~A~~~~~~~~~ 199 (740)
....+|.-++|.++.++...
T Consensus 762 ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 762 TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHhhcCcHHHHHHHHHhhcc
Confidence 12345777778877777653
No 403
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=55.01 E-value=20 Score=32.53 Aligned_cols=56 Identities=23% Similarity=0.318 Sum_probs=36.1
Q ss_pred hhccCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCC
Q 004644 602 LSRAGRLDEAFEMVKGM-KIKP-NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK 657 (740)
Q Consensus 602 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 657 (740)
..+.|+.+.|.+++.+. ..-| ....|.-+...-.+.|+++.|.+.+++.++++|++
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 44566666666666443 3344 33356666666667777777777777777777765
No 404
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=54.73 E-value=1.6e+02 Score=26.61 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=19.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 004644 523 SWNSLIAGYAINGNATEAIKLFEEMVME 550 (740)
Q Consensus 523 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 550 (740)
..+.++..+...|+++.|-+.|.-++..
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 4556666777777777777777777764
No 405
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=54.63 E-value=2.2e+02 Score=29.61 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=48.5
Q ss_pred HHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHH---hhCCCccCCcccE
Q 004644 632 GACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSM---EGSGAQKQPGCSW 697 (740)
Q Consensus 632 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~s~ 697 (740)
.++....++..+.+-.+.++.+..+.+....+-++.+...|++.+|.+.+... ++.|..++|.+|-
T Consensus 214 r~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~ 282 (696)
T KOG2471|consen 214 RFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSS 282 (696)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhh
Confidence 34555667777777778888888888888889999999999999999887643 2334444555553
No 406
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.30 E-value=93 Score=29.57 Aligned_cols=88 Identities=18% Similarity=0.167 Sum_probs=54.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC--CCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhh--
Q 004644 528 IAGYAINGNATEAIKLFEEMVME--GVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLS-- 603 (740)
Q Consensus 528 ~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-- 603 (740)
|.+++..|++.+++...-+-.+. .++|...-...++ |++.|......+.-..-.+. .-+-+..-|..++++|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILL--ysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILL--YSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHH--HHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 56777788888877665544331 2444444333333 67777777777777666653 23333444777776655
Q ss_pred ---ccCChHHHHHHHHhC
Q 004644 604 ---RAGRLDEAFEMVKGM 618 (740)
Q Consensus 604 ---~~g~~~~A~~~~~~~ 618 (740)
=.|.++||++++..-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 468899999888543
No 407
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=54.19 E-value=2.2e+02 Score=27.73 Aligned_cols=158 Identities=16% Similarity=0.241 Sum_probs=91.6
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHHHHhcccC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC----
Q 004644 477 IHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD-PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEG---- 551 (740)
Q Consensus 477 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---- 551 (740)
+++.+...++-++......-++...+.+.+|-+..+++... ..|. -+++. .+-.+.+.-++++.+.-
T Consensus 22 LlEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~~sed~--p~a~~------ekr~~Vla~lkeLe~ev~piv 93 (432)
T KOG2758|consen 22 LLEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSEDM--PNALV------EKRTEVLAELKELEEEVAPIV 93 (432)
T ss_pred HHHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhcccccccc--hHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 44444455566666666677777777788888888887664 1111 11111 11122333333333220
Q ss_pred ---CCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHH---HhCCCCCCH
Q 004644 552 ---VAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMV---KGMKIKPNA 624 (740)
Q Consensus 552 ---~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~---~~~~~~p~~ 624 (740)
-.||.. .......+....++.+.+.|++.|+ +++.-........+|++..|-.++ +.+...||.
T Consensus 94 ~~le~Pd~~---------~~~~~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~ 164 (432)
T KOG2758|consen 94 KVLENPDLI---------AALRSDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDR 164 (432)
T ss_pred HHHcCHHHH---------HHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcch
Confidence 123221 1122334457788888899999999 888888888889999999997754 555444544
Q ss_pred H----HHHHHHHHHHhcCCHHHHHHHHHHhHc
Q 004644 625 G----IWGTLLGACRMHQNIKLGRIAVEKLSE 652 (740)
Q Consensus 625 ~----~~~~l~~~~~~~g~~~~a~~~~~~~~~ 652 (740)
. .|+-+.+-- ...+.+.|.+-+.++.+
T Consensus 165 n~lsalwGKlASEI-L~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 165 NYLSALWGKLASEI-LTQNWDGALEDLTRLRE 195 (432)
T ss_pred hhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHH
Confidence 2 355554332 23567777777666644
No 408
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.15 E-value=2.5e+02 Score=28.43 Aligned_cols=92 Identities=16% Similarity=0.093 Sum_probs=58.2
Q ss_pred hHHHHHHHHhhccCCHHHHHHHhcccCC------CCcchHHHHHHHHHhcCChHHHHHHHHHHHHC---------CCCCC
Q 004644 491 FVGNSLITMYAKCGRIQNAELLFKDADP------VDVISWNSLIAGYAINGNATEAIKLFEEMVME---------GVAPD 555 (740)
Q Consensus 491 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---------~~~p~ 555 (740)
....-+.+.|..||+++.|.+.+.+..+ .-+..|-.+|..-.-.|+|......-.+..+. .+.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 3456788899999999999999988652 22345666666666678887777776666553 12333
Q ss_pred hHHHHHHHHhhcccchHHHHHHHHHHhhh
Q 004644 556 PVTFIGVLSACSHVGLVDGGLKLFECMTE 584 (740)
Q Consensus 556 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 584 (740)
...+.++...+ .++++.|...|-....
T Consensus 231 l~C~agLa~L~--lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 231 LKCAAGLANLL--LKKYKSAAKYFLLAEF 257 (466)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHHHhCCC
Confidence 33444443333 3367777666655443
No 409
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=53.22 E-value=43 Score=25.20 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=18.7
Q ss_pred cCChHHHHHHhccCCCCCcchHHHHHHHHHHcCCHH
Q 004644 246 NGRMLEARRLFDQMPIRNVVAWNAMIAAYVQRGQIE 281 (740)
Q Consensus 246 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 281 (740)
.|+.+.|+.+++.+. +.+..+..++.++...|+-.
T Consensus 49 ~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 49 HGNESGARELLKRIV-QKEGWFSKFLQALRETEHHE 83 (88)
T ss_pred cCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchh
Confidence 355555555555555 55555555555555555443
No 410
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=52.30 E-value=1e+02 Score=23.52 Aligned_cols=62 Identities=13% Similarity=0.020 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCC--CcchHHHHHHHHhcCCch-HHHHHHHHH
Q 004644 623 NAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK--TSCYALLSNMHAEAGRWD-EVEKVRVSM 684 (740)
Q Consensus 623 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~-~a~~~~~~~ 684 (740)
|......+...+...|+++.|...+-.+++.+|+. ..+-..|..++...|.-+ -+.+.+++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 44466667777888888888888888888877655 455566666666666644 444445444
No 411
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=51.89 E-value=3.1e+02 Score=28.80 Aligned_cols=129 Identities=12% Similarity=0.080 Sum_probs=57.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC------cchH
Q 004644 522 ISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL------VEHY 595 (740)
Q Consensus 522 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~ 595 (740)
..+..++.+|... ..++-..+|+++.+. .-|.+.+...+.-+...++...+..+|..+... +-|. .+.|
T Consensus 100 mal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evW 174 (711)
T COG1747 100 MALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADKYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVW 174 (711)
T ss_pred HHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHHHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHH
Confidence 3455555555555 334455666665552 334444444443444445555666666555542 2221 1223
Q ss_pred HHHhhhhhccCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCC
Q 004644 596 ACMIDLLSRAGRLDEAFEMVKGMK----IKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQK 657 (740)
Q Consensus 596 ~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 657 (740)
..+...-+ .+.+..+.+..... ...-.+.+.-+-.-|....|+.+|++++..+++.+..|
T Consensus 175 eKL~~~i~--dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~ 238 (711)
T COG1747 175 EKLPELIG--DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKD 238 (711)
T ss_pred HHHHHhcc--ccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchh
Confidence 33332221 23333333333332 11112222222233444556666666666666655544
No 412
>PF15469 Sec5: Exocyst complex component Sec5
Probab=51.67 E-value=94 Score=27.70 Aligned_cols=110 Identities=13% Similarity=0.189 Sum_probs=53.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcC-CcchHHHHhhhhhccCChHH
Q 004644 532 AINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP-LVEHYACMIDLLSRAGRLDE 610 (740)
Q Consensus 532 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 610 (740)
.+..+...++.++++..-. ...-.-+.-|...|+++.+...|.++...++-.. ....+.. -+.+
T Consensus 68 ~k~~~l~~~l~~l~r~~fl------F~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~---------v~~e 132 (182)
T PF15469_consen 68 EKADKLRNALEFLQRNRFL------FNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQK---------VWSE 132 (182)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHH---------HHHH
Confidence 3334444555555554321 1122445667778888888888877776433222 1112211 1233
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHH
Q 004644 611 AFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYAL 663 (740)
Q Consensus 611 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 663 (740)
....+..+. ...|..|.. .....+......+.+++++|++..+|..
T Consensus 133 ve~ii~~~r----~~l~~~L~~---~~~s~~~~~~~i~~Ll~L~~~~dPi~~~ 178 (182)
T PF15469_consen 133 VEKIIEEFR----EKLWEKLLS---PPSSQEEFLKLIRKLLELNVEEDPIWYW 178 (182)
T ss_pred HHHHHHHHH----HHHHHHHhC---CCCCHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 333333221 112222221 1145666677777778887765444443
No 413
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=50.36 E-value=77 Score=29.72 Aligned_cols=185 Identities=10% Similarity=0.022 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcc-cchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhcc
Q 004644 527 LIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH-VGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRA 605 (740)
Q Consensus 527 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 605 (740)
++..+.+.|++++.+..++++...+...+..--+.+-.+|-+ .|....+++.+..+.....-..+......+-+.-.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki 86 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKI 86 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHH
Q ss_pred CC-----hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-----------------HHHHHHHHHhHc-----cCCCCC
Q 004644 606 GR-----LDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNI-----------------KLGRIAVEKLSE-----LEPQKT 658 (740)
Q Consensus 606 g~-----~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-----------------~~a~~~~~~~~~-----~~p~~~ 658 (740)
.. -.+.+.+++..- -|....-.+.+-.+...||+ +.|..+|+++++ +.|.+|
T Consensus 87 e~EL~~~C~eii~lId~~L-ip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 87 EDELIDICNEIIRLIDKSL-IPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTC-HHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Q ss_pred cchHHHHH----HHHhcCCchHHHHHHHHHhhCCCccCCcccEEEEcCEEEEEecCCCCCCChHHHHHHHHH
Q 004644 659 SCYALLSN----MHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKT 726 (740)
Q Consensus 659 ~~~~~l~~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~ 726 (740)
.-.-+.-| .|.-.|+.++|.++-+..-+..+....+.+ +.+++++..|...|..
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~--------------e~~~~d~~~ilqlLrd 223 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLS--------------EESYKDSTLILQLLRD 223 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSH--------------TTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccc--------------hhhhHHHHHHHHHHHH
No 414
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=50.01 E-value=49 Score=30.55 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=52.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHhcc----------CCCccc-----------HHHHHHHHHcCCChHHHHHHHhhC--CCC
Q 004644 81 NSMIAGYLHNDKVKEARELFDKMF----------RPDLFS-----------WALMITCYTRKGELEKARELFDLL--PNK 137 (740)
Q Consensus 81 ~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~~~-----------~~~l~~~~~~~~~~~~a~~~~~~~--~~~ 137 (740)
..-+.-+.+.|++.+|...|+.++ +|...- +....+++...|++-++++.-..+ ..+
T Consensus 182 ~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~ 261 (329)
T KOG0545|consen 182 HQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP 261 (329)
T ss_pred HHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC
Confidence 344566788899999888887762 133222 233334455556666555555554 344
Q ss_pred CChhhHHHHHHHHHhcCChhhHHHHHhcCCCCCc
Q 004644 138 EDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKNI 171 (740)
Q Consensus 138 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 171 (740)
.++.+|..-+.+.+..-+.++|.+-|......++
T Consensus 262 ~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 262 GNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 5566666666666666666666666655554333
No 415
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.50 E-value=3.8e+02 Score=29.18 Aligned_cols=94 Identities=12% Similarity=0.045 Sum_probs=49.3
Q ss_pred hhhHHHHHHHHHHcC-----CHHHHHHHHHhccc-CCHHHHHHHHHHHHcc---CCHHHHHHHHHhhCCCCCeecHHHHH
Q 004644 357 VVCWNVMIKGYAQCG-----RMDEAINLFRQMVN-KDIVTWNTMIAGYAQI---RQMDDAVKIFEEMGKRRNTVSWNALI 427 (740)
Q Consensus 357 ~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~li 427 (740)
+.....+..+|.+.. +...|+.+|.+..+ .++..-..++..+..- .+...|.+.|......-...++-.+.
T Consensus 288 ~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la 367 (552)
T KOG1550|consen 288 PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLA 367 (552)
T ss_pred CccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHH
Confidence 344555556665532 55667777776654 2333333333333332 34667777777764444444444444
Q ss_pred HHHHc----CCChHHHHHHHHHHHHCC
Q 004644 428 SGFLQ----NEFHLDALKIFVLMTQEG 450 (740)
Q Consensus 428 ~~~~~----~~~~~~A~~~~~~m~~~~ 450 (740)
.+|.. ..+...|..++.+....|
T Consensus 368 ~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 368 LCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 44332 334556666666666665
No 416
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=49.50 E-value=65 Score=24.31 Aligned_cols=34 Identities=12% Similarity=0.265 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHhcccCCHHHHHHHHHHHHccCCHH
Q 004644 371 GRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMD 405 (740)
Q Consensus 371 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 405 (740)
|+.+.|.+++..+. ..+..|...+.++...|.-+
T Consensus 50 g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 50 GNESGARELLKRIV-QKEGWFSKFLQALRETEHHE 83 (88)
T ss_pred CcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchh
Confidence 44555555555555 44444555555555444433
No 417
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=48.70 E-value=4.1e+02 Score=29.37 Aligned_cols=18 Identities=11% Similarity=0.117 Sum_probs=12.1
Q ss_pred HHhcCCHHHHHHHHHHhH
Q 004644 634 CRMHQNIKLGRIAVEKLS 651 (740)
Q Consensus 634 ~~~~g~~~~a~~~~~~~~ 651 (740)
+...|+.++|.....+.-
T Consensus 587 ~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 587 YEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHcCcHHHHHHHHHHHH
Confidence 556677777777666553
No 418
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=48.51 E-value=1.1e+02 Score=32.29 Aligned_cols=133 Identities=11% Similarity=-0.031 Sum_probs=86.1
Q ss_pred CCChHHHHHHHHhhcc--cchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhh-ccCChHHHHHHHHhC-CCCCC--HHH
Q 004644 553 APDPVTFIGVLSACSH--VGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLS-RAGRLDEAFEMVKGM-KIKPN--AGI 626 (740)
Q Consensus 553 ~p~~~~~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~-~~~p~--~~~ 626 (740)
.|+..+.-.++.-... ....+-|-.++..|.. .+-|-=... .++.+|- -.|+...|...+... ...|- .+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~l-n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLIL-NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEe-ecccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 3555544444332222 1223445555555543 444542222 2344454 469999998876543 44452 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhhCC
Q 004644 627 WGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688 (740)
Q Consensus 627 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 688 (740)
...|.+...+.|-.-.|...+.+.+.+....|-.+..+|++|....+.+.|++.++...+..
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 55666666677777788899999999998888899999999999999999999988765443
No 419
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=48.33 E-value=48 Score=33.74 Aligned_cols=53 Identities=15% Similarity=0.234 Sum_probs=28.5
Q ss_pred HHHHHHHhcCChHHHHHHhccCC-----------CCCcchHHHHHHHHHHcCCHHHHHHHHhhC
Q 004644 238 TMLSGYARNGRMLEARRLFDQMP-----------IRNVVAWNAMIAAYVQRGQIEEAARLFIEM 290 (740)
Q Consensus 238 ~l~~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 290 (740)
.|++.++-.|++..|+++++.+. .-.+.++-.++-+|.-.+++.+|++.|...
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555544432 123345555666666667777777766654
No 420
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=47.53 E-value=32 Score=21.18 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=23.0
Q ss_pred cchHHHHHHHHhcCCchHHHHHHHHHhh
Q 004644 659 SCYALLSNMHAEAGRWDEVEKVRVSMEG 686 (740)
Q Consensus 659 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 686 (740)
.+|..||.+-...+++++|..-+++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4688899999999999999888776653
No 421
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=47.36 E-value=59 Score=33.37 Aligned_cols=101 Identities=16% Similarity=0.202 Sum_probs=57.9
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChHHHHH-HHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCC
Q 004644 530 GYAINGNATEAIKLFEEMVMEGVAPDPVTFIG-VLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGR 607 (740)
Q Consensus 530 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 607 (740)
.+...+.++.|+.++.++++ ..||...|-+ -..++.+.+++..|+.=+..+++ ..|+ ...|-.=+.++.+.++
T Consensus 13 ~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie---~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIE---LDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhh---cCchhhheeeeccHHHHhHHH
Confidence 34455677777777777777 4676554332 22566667777777766666654 3354 3444444444445556
Q ss_pred hHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 004644 608 LDEAFEMVKGM-KIKPNAGIWGTLLGACR 635 (740)
Q Consensus 608 ~~~A~~~~~~~-~~~p~~~~~~~l~~~~~ 635 (740)
+.+|...++.. ...|+..-..-.+.-|.
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 66666666554 35666655555555553
No 422
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.33 E-value=53 Score=29.64 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCC
Q 004644 619 KIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEP 655 (740)
Q Consensus 619 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 655 (740)
...|++.++..++.++...|+.++|....+++..+.|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4678888888888888888999999999999888888
No 423
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=45.77 E-value=4.5e+02 Score=30.49 Aligned_cols=102 Identities=13% Similarity=0.178 Sum_probs=60.2
Q ss_pred HHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC------HHHH-HHHHH
Q 004644 578 LFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGMKIKP-NAGIWGTLLGACRMHQN------IKLG-RIAVE 648 (740)
Q Consensus 578 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~------~~~a-~~~~~ 648 (740)
.++..-+...-+|. .+-|-.+.......+-++...++.+.-.+.+ |+.-..+|+.++...+. -..+ .-+.+
T Consensus 725 ~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~ 804 (863)
T TIGR02414 725 ALAAFYQKWKDDPLVMDKWFALQATSPRPDTLERVKALLQHPAFDLKNPNRVRALIGAFANNNLVRFHDISGSGYRFLAD 804 (863)
T ss_pred HHHHHHHHHCCCchhHHHHHHHHhCCCcccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhcCcccccCCCCcHHHHHHH
Confidence 34433344445565 4455555443333344444444443333332 33456677766642221 1222 35677
Q ss_pred HhHccCCCCCcchHHHHHHHHhcCCchHHHH
Q 004644 649 KLSELEPQKTSCYALLSNMHAEAGRWDEVEK 679 (740)
Q Consensus 649 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 679 (740)
.+++++|-||..-..|+..+.+-.++++..+
T Consensus 805 ~i~~ld~~Np~~aarl~~~~~~w~~~~~~r~ 835 (863)
T TIGR02414 805 QIIAIDRFNPQVAARLLEPLTRWRKLDPKRQ 835 (863)
T ss_pred HHHHhcCcCHHHHHHHHHHhhhhhcCCHHHH
Confidence 8889999999999999999999999998766
No 424
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.33 E-value=2.4e+02 Score=29.98 Aligned_cols=51 Identities=12% Similarity=0.038 Sum_probs=30.5
Q ss_pred HHhcCCHHHHHHHHHHhHccCCC-CCcchHHHHHHHH-hcCCchHHHHHHHHH
Q 004644 634 CRMHQNIKLGRIAVEKLSELEPQ-KTSCYALLSNMHA-EAGRWDEVEKVRVSM 684 (740)
Q Consensus 634 ~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~~ 684 (740)
..+.|-..-|.+..+-+++++|. ||-+...+.++|+ +..+|.=-.++++..
T Consensus 352 l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 352 LAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34556666677777777777776 6666666666665 445555444544444
No 425
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=44.50 E-value=3.1e+02 Score=26.66 Aligned_cols=77 Identities=12% Similarity=-0.062 Sum_probs=41.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcC-------------
Q 004644 610 EAFEMVKGMKIKPNAGIWGTLLGACR----MHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG------------- 672 (740)
Q Consensus 610 ~A~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------- 672 (740)
.|...+......-+......|...|. ...|.++|..-++++-+... ......++ ++...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 45555544422223333333333221 12367777777777777665 45555666 555555
Q ss_pred --CchHHHHHHHHHhhCCC
Q 004644 673 --RWDEVEKVRVSMEGSGA 689 (740)
Q Consensus 673 --~~~~a~~~~~~~~~~~~ 689 (740)
++..|...+...-..+.
T Consensus 250 ~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 250 EEDKKQALEWLQKACELGF 268 (292)
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 55666666665554443
No 426
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=44.18 E-value=89 Score=24.93 Aligned_cols=40 Identities=18% Similarity=0.375 Sum_probs=29.1
Q ss_pred CHHHHHHHhcccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 004644 505 RIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVM 549 (740)
Q Consensus 505 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 549 (740)
+++++.+.+.+-. -|..++..|...|.+++|++++.+...
T Consensus 28 ~~~~~e~~L~~~~-----~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 28 DLEEVEEVLKEHG-----KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHHcC-----CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4455555553322 488888899999999999999988876
No 427
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=44.01 E-value=69 Score=28.20 Aligned_cols=36 Identities=14% Similarity=0.253 Sum_probs=25.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHH
Q 004644 631 LGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNM 667 (740)
Q Consensus 631 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 667 (740)
+..|.+.|.+++|.+++++..+ +|++...-..|..+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 3467888888888888888887 77766554444444
No 428
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=43.85 E-value=3.4e+02 Score=26.98 Aligned_cols=113 Identities=15% Similarity=0.128 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHCCCCCC-hHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhc---cCChHHH
Q 004644 537 ATEAIKLFEEMVMEGVAPD-PVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSR---AGRLDEA 611 (740)
Q Consensus 537 ~~~A~~~~~~m~~~~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g~~~~A 611 (740)
.+.-+.+++++++. .|+ ......++..+.+..+.+...+-++.+... .|+ ...|...++.... .-.+++.
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~---~~~~~~LW~~yL~~~q~~~~~f~v~~~ 121 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK---NPGSPELWREYLDFRQSNFASFTVSDV 121 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHhccCcHHHH
Confidence 34556777777765 344 345666777777777777777777777664 233 4555555544332 1123333
Q ss_pred HHHH-------HhCCCC--------C--CHHHHHHHHHH---HHhcCCHHHHHHHHHHhHccC
Q 004644 612 FEMV-------KGMKIK--------P--NAGIWGTLLGA---CRMHQNIKLGRIAVEKLSELE 654 (740)
Q Consensus 612 ~~~~-------~~~~~~--------p--~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~ 654 (740)
...| ...... | +......++.. ++..|-.+.|...++-+++++
T Consensus 122 ~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 122 RDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 3332 211111 1 11122233333 457799999999999999875
No 429
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=43.02 E-value=30 Score=28.52 Aligned_cols=34 Identities=26% Similarity=0.478 Sum_probs=25.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhh
Q 004644 531 YAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566 (740)
Q Consensus 531 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~ 566 (740)
....|.-.+|..+|++|++.|-+||. |..|+.++
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34457777899999999999999986 44555443
No 430
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.94 E-value=41 Score=37.19 Aligned_cols=72 Identities=18% Similarity=0.336 Sum_probs=51.7
Q ss_pred hhhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHH
Q 004644 600 DLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEK 679 (740)
Q Consensus 600 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 679 (740)
++...+|+++.|++..+++. |..+|..|+.....+|+.+.|+..|++.-. +..|+-+|.-.|+.++-.+
T Consensus 651 ~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn--------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN--------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh--------hhheeEEEEEeCCHHHHHH
Confidence 34567899999999888764 567899999988899999999988888633 3345555666666555444
Q ss_pred HHH
Q 004644 680 VRV 682 (740)
Q Consensus 680 ~~~ 682 (740)
+.+
T Consensus 720 m~~ 722 (1202)
T KOG0292|consen 720 MMK 722 (1202)
T ss_pred HHH
Confidence 443
No 431
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=42.66 E-value=1e+02 Score=25.14 Aligned_cols=47 Identities=19% Similarity=0.357 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhh
Q 004644 539 EAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEV 585 (740)
Q Consensus 539 ~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 585 (740)
+..+-+..+...++.|++.....-++||-+.+++.-|.++|+-++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34455556666678899888889999999999999999999888765
No 432
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=42.59 E-value=91 Score=25.20 Aligned_cols=55 Identities=16% Similarity=0.012 Sum_probs=28.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhH-------ccCCCCCcch----HHHHHHHHhcCCchHHHHHHHHH
Q 004644 630 LLGACRMHQNIKLGRIAVEKLS-------ELEPQKTSCY----ALLSNMHAEAGRWDEVEKVRVSM 684 (740)
Q Consensus 630 l~~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~ 684 (740)
|..++...|++++++...++++ +++.+....| ..-+..+...|+.+||.+.|+..
T Consensus 61 Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 61 LSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3334444455544444444443 2344433222 34455677788888888877654
No 433
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.42 E-value=1.4e+02 Score=28.95 Aligned_cols=48 Identities=13% Similarity=0.009 Sum_probs=28.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 004644 435 FHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482 (740)
Q Consensus 435 ~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~ 482 (740)
++.+++.++..-++-|+-||.+++..++..+.+.++...|.++.-.++
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344566665555566666666666666666666666665555544443
No 434
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=42.31 E-value=3.5e+02 Score=26.69 Aligned_cols=120 Identities=13% Similarity=0.160 Sum_probs=79.9
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHhhc------ccchHHHHHHHHHHhhhhcCCcCC-cchHHHHhhhhhccCCh
Q 004644 536 NATEAIKLFEEMVMEGVAPDPVTFIGVLSACS------HVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRL 608 (740)
Q Consensus 536 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~------~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 608 (740)
-.++++.++.+....+ .|-.......+.+|- ..-+|..-..+|+.+.. +.|+ +.+.|.-+- ++..--.
T Consensus 271 lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAVA-la~~~Gp 345 (415)
T COG4941 271 LIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAVA-LAMREGP 345 (415)
T ss_pred HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHHH-HHHhhhH
Confidence 3567888888888876 487777777766652 23467778888887764 5676 344454443 3333335
Q ss_pred HHHHHHHHhCCCCCCHH---H-HHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcc
Q 004644 609 DEAFEMVKGMKIKPNAG---I-WGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSC 660 (740)
Q Consensus 609 ~~A~~~~~~~~~~p~~~---~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 660 (740)
+.++..++.+..+|.-. . +..-...+.+-|..++|...|++++.+.++..+-
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 66777777775443222 2 3333445778899999999999999999887654
No 435
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=42.24 E-value=67 Score=30.59 Aligned_cols=53 Identities=26% Similarity=0.352 Sum_probs=29.1
Q ss_pred HHHHhhccCCHHHHHHHhcccC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 004644 496 LITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMV 548 (740)
Q Consensus 496 l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 548 (740)
....|.++|.+.+|.++-+... |.+...|-.++..++..|+--.|...++++.
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3345555666666655555443 3444555566666666666555555555543
No 436
>PRK14015 pepN aminopeptidase N; Provisional
Probab=42.10 E-value=5.4e+02 Score=29.91 Aligned_cols=103 Identities=14% Similarity=0.184 Sum_probs=61.1
Q ss_pred HHHHhhhhcCCcCC-cchHHHHhhhhhccCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC------HHHH-HHHHH
Q 004644 578 LFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGMKIKP-NAGIWGTLLGACRMHQN------IKLG-RIAVE 648 (740)
Q Consensus 578 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~------~~~a-~~~~~ 648 (740)
.++..-+++.-.|. .+-|-.+...-.+.+-++...++.+.-.+.+ |+.-..+|+.++...+- -..+ .-+.+
T Consensus 735 ~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~hp~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~ 814 (875)
T PRK14015 735 ALADFYDRWKDDPLVMDKWFALQATSPAPDTLERVRALMQHPAFDLKNPNRVRSLIGAFAAANPAGFHAADGSGYRFLAD 814 (875)
T ss_pred HHHHHHHHhCCCchhhHHHHHHHhCCCCcCHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhhcCCcccCCCCCcHHHHHHH
Confidence 33333333445565 5555555444344444444444443333333 33456777777643221 1223 35677
Q ss_pred HhHccCCCCCcchHHHHHHHHhcCCchHHHHH
Q 004644 649 KLSELEPQKTSCYALLSNMHAEAGRWDEVEKV 680 (740)
Q Consensus 649 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 680 (740)
.+++++|-||..-..|+..+.+-.++++..+.
T Consensus 815 ~i~~ld~~Np~~aarl~~~~~~~~~~~~~r~~ 846 (875)
T PRK14015 815 QILALDKINPQVAARLATPLIRWRRYDPKRQA 846 (875)
T ss_pred HHHHhcCcCHHHHHHHHHHhhhhhccCHHHHH
Confidence 88899999999999999999999999887663
No 437
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=41.82 E-value=1.3e+02 Score=30.76 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhh
Q 004644 386 KDIVTWNTMIAGYAQIRQMDDAVKIFEEM 414 (740)
Q Consensus 386 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 414 (740)
-.+.++..++-+|.-.+++.+|.+.|...
T Consensus 162 ~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 162 CHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred hheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555544
No 438
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=39.22 E-value=2.8e+02 Score=26.58 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=12.8
Q ss_pred HHHHhHccCCCCCcchHHHHH
Q 004644 646 AVEKLSELEPQKTSCYALLSN 666 (740)
Q Consensus 646 ~~~~~~~~~p~~~~~~~~l~~ 666 (740)
.+--++.+||-.|..+--+..
T Consensus 266 LyLLv~R~DPA~Pss~p~i~k 286 (309)
T PF07163_consen 266 LYLLVVRLDPASPSSLPWIYK 286 (309)
T ss_pred HHHHheeecCCCCCcchHHHH
Confidence 344456788888776554433
No 439
>PRK12356 glutaminase; Reviewed
Probab=38.79 E-value=3.9e+02 Score=26.30 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=18.3
Q ss_pred HHHHHHhhCCCCCeecHHHHHHH
Q 004644 407 AVKIFEEMGKRRNTVSWNALISG 429 (740)
Q Consensus 407 A~~~~~~~~~~~~~~~~~~li~~ 429 (740)
...++++++..|+...||.++..
T Consensus 85 ~~~V~~~VG~EPSG~~FNsi~~L 107 (319)
T PRK12356 85 PQAVREKIGADPTGLPFNSVIAI 107 (319)
T ss_pred HHHHHHHhCCCCCCCCcchHHHh
Confidence 45688888889999989888654
No 440
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=38.13 E-value=1.7e+02 Score=26.96 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=9.5
Q ss_pred HHHHhcCChHHHHHHHHHH
Q 004644 529 AGYAINGNATEAIKLFEEM 547 (740)
Q Consensus 529 ~~~~~~g~~~~A~~~~~~m 547 (740)
......|+.++|++....+
T Consensus 72 r~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 72 RRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHhccHHHHHHHHHHh
Confidence 3344555555555555444
No 441
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=38.10 E-value=4.2e+02 Score=26.38 Aligned_cols=86 Identities=20% Similarity=0.145 Sum_probs=43.1
Q ss_pred HHHHhhccCCHHHHHHHhcccCCCCcchHHHHHHHHHhcCChHHH-HHHHHHHHHCCCCCChHHHHHHHHhhcccchHHH
Q 004644 496 LITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEA-IKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDG 574 (740)
Q Consensus 496 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~ 574 (740)
+.|..++.++.+.+..+-+.+..-......++..++....-.+.. ..+++.+.. .||..+...+++|.+.......
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~---~~d~~~~~a~lRAls~~~~~~~ 248 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQ---APDLELLSALLRALSSAPASDL 248 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHcCCCchhH
Confidence 344455555554444444444433333445555554444433332 233333333 2777777777777777666555
Q ss_pred HHHHHHHhhh
Q 004644 575 GLKLFECMTE 584 (740)
Q Consensus 575 a~~~~~~~~~ 584 (740)
....+..+.+
T Consensus 249 ~~~~i~~~L~ 258 (340)
T PF12069_consen 249 VAILIDALLQ 258 (340)
T ss_pred HHHHHHHHhc
Confidence 5554555443
No 442
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=37.58 E-value=4.5e+02 Score=26.59 Aligned_cols=198 Identities=17% Similarity=0.195 Sum_probs=120.1
Q ss_pred CCChhHHHHHHHHhhccCCHHHHHHHhcccCCCCcchHHHHHHH-HHhcCChHHHHHHH--HHHHHCCCCCChHHHHHHH
Q 004644 487 VNDLFVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAG-YAINGNATEAIKLF--EEMVMEGVAPDPVTFIGVL 563 (740)
Q Consensus 487 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~--~~m~~~~~~p~~~~~~~ll 563 (740)
..+..+...+++.+...++|+.- |..+.. .-++|+...|+... +-|.-..-.||..|-..++
T Consensus 49 ~s~~kv~~~i~~lc~~~~~w~~L---------------ne~i~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li 113 (439)
T KOG1498|consen 49 ASNTKVLEEIMKLCFSAKDWDLL---------------NEQIRLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLI 113 (439)
T ss_pred HHHHHHHHHHHHHHhccccHHHH---------------HHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHH
Confidence 34455556666666666666543 222222 24567777666432 2222222356655555444
Q ss_pred HhhcccchHHHHHHHHHHhhhhcCCcC--C-cchHHHHhhhhhccCChHHHHHHHHhCCCCC------CHHH--HHHHHH
Q 004644 564 SACSHVGLVDGGLKLFECMTEVYAIEP--L-VEHYACMIDLLSRAGRLDEAFEMVKGMKIKP------NAGI--WGTLLG 632 (740)
Q Consensus 564 ~a~~~~g~~~~a~~~~~~~~~~~~~~p--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p------~~~~--~~~l~~ 632 (740)
... +...+ ..+-- . ...-..|+..+..+|++++|.+++...+++. ...+ ..--+.
T Consensus 114 ~tL-------------r~Vte-gkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmr 179 (439)
T KOG1498|consen 114 ETL-------------RTVTE-GKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMR 179 (439)
T ss_pred HHH-------------HHhhc-CceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHH
Confidence 322 11111 01111 1 2233567788899999999999998876321 1111 111134
Q ss_pred HHHhcCCHHHHHHHHHHhHccCCCCC-------cchHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCcccEEEEcCEEE
Q 004644 633 ACRMHQNIKLGRIAVEKLSELEPQKT-------SCYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQIH 705 (740)
Q Consensus 633 ~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 705 (740)
-|...+|+-.|.-..+++....=+++ ..|..+..++...+.+=++-+.++.+-+.|-.+....-|+++--.+.
T Consensus 180 KOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv 259 (439)
T KOG1498|consen 180 LCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIV 259 (439)
T ss_pred HHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhhe
Confidence 57888999999888888765432222 35788888888999999999999999998887776666888877776
Q ss_pred EEecCCCC
Q 004644 706 TFLSGDPK 713 (740)
Q Consensus 706 ~f~~~~~~ 713 (740)
.|..--+.
T Consensus 260 ~f~~LAp~ 267 (439)
T KOG1498|consen 260 SFCVLAPH 267 (439)
T ss_pred eEEeecCC
Confidence 67654433
No 443
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=36.95 E-value=73 Score=28.73 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=16.7
Q ss_pred CCChHHHHHHHHhhcccchHHHHHHHHHHhhh
Q 004644 553 APDPVTFIGVLSACSHVGLVDGGLKLFECMTE 584 (740)
Q Consensus 553 ~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 584 (740)
.|+..++..++.++...|+.++|.+...++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555555555544
No 444
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=36.90 E-value=25 Score=25.98 Aligned_cols=48 Identities=6% Similarity=0.032 Sum_probs=28.0
Q ss_pred hcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHhh
Q 004644 636 MHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEG 686 (740)
Q Consensus 636 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 686 (740)
..|+.+.|+..|++.+..=-+-..+-+. .....-.|++|.++..+|+.
T Consensus 20 E~g~~e~Al~~Y~~gi~~l~eg~ai~~~---~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 20 EWGDKEQALAHYRKGLRELEEGIAVPVP---SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHcCCCCC---cccccHHHHHHHHHHHHHHH
Confidence 4477777777777766421000000000 23455789999999999974
No 445
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=36.89 E-value=4.7e+02 Score=26.62 Aligned_cols=122 Identities=10% Similarity=-0.010 Sum_probs=63.1
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHH--------HhhcccchHHHHHHHHHHhhhhcCCcCC----cchHHHHhhhh
Q 004644 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVL--------SACSHVGLVDGGLKLFECMTEVYAIEPL----VEHYACMIDLL 602 (740)
Q Consensus 535 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll--------~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~ 602 (740)
.++.+|.++-+.....-..-|..|+..+. .++-..|+...-+.++......-.+.-+ ....+++.+.|
T Consensus 140 K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~y 219 (493)
T KOG2581|consen 140 KEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNY 219 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHH
Confidence 56666666655544332223333333222 1233455555555555544432222222 33356666777
Q ss_pred hccCChHHHHHHHHhCCCCC--CHHHH----HHHHHHHHhcCCHHHHHHHHHHhHccCCC
Q 004644 603 SRAGRLDEAFEMVKGMKIKP--NAGIW----GTLLGACRMHQNIKLGRIAVEKLSELEPQ 656 (740)
Q Consensus 603 ~~~g~~~~A~~~~~~~~~~p--~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 656 (740)
...+.++.|.+++.+.+.+. +..-| .-+...-..++++..|.+.+-.++...|+
T Consensus 220 L~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 220 LHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred hhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 77777888888777664211 11112 11222334567777777777777777775
No 446
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=34.85 E-value=1.1e+02 Score=23.45 Aligned_cols=26 Identities=19% Similarity=0.082 Sum_probs=18.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHccCC
Q 004644 630 LLGACRMHQNIKLGRIAVEKLSELEP 655 (740)
Q Consensus 630 l~~~~~~~g~~~~a~~~~~~~~~~~p 655 (740)
+.......|+.+.|...+++++++..
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 44445667888888888888887643
No 447
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=34.55 E-value=2.9e+02 Score=23.50 Aligned_cols=48 Identities=23% Similarity=0.319 Sum_probs=23.9
Q ss_pred hHHHHHHHHhhcccch-HHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhc
Q 004644 556 PVTFIGVLSACSHVGL-VDGGLKLFECMTEVYAIEPLVEHYACMIDLLSR 604 (740)
Q Consensus 556 ~~~~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 604 (740)
..+|..++.+.+++.- .--+..+|.-+.+ .+.++++..|.+|+....+
T Consensus 79 ~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~-~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 79 NSSFHIIFKSLSNSSSAKLTSLTLFNFLKK-NDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred cchHHHHHHHHccChHHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHc
Confidence 3345555555544444 3334555555554 2445555555555555443
No 448
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=34.32 E-value=8.2e+02 Score=28.65 Aligned_cols=84 Identities=8% Similarity=0.104 Sum_probs=56.2
Q ss_pred HHHHHccCChhHHHHHHhhccC---CCccchHH-------HHHHHHcCC---ChhHHHHHHhhCCCCCcch--HHHHHHH
Q 004644 22 ITQLGKSGRVEEAIKIFSQMSQ---KNTVTYNS-------MISAYAKNG---RVNDARKLFEQMPQRNLVS--WNSMIAG 86 (740)
Q Consensus 22 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~-------l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~l~~~ 86 (740)
-+++.....+++|+..++++.. .-...+-+ ++.-....| .+++|+.-|+.+....... |..-+.+
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALV 561 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHH
Confidence 4567778889999999998863 22222222 222222334 4889999999987633333 5555566
Q ss_pred HhcCCChHHHHHHHHhccC
Q 004644 87 YLHNDKVKEARELFDKMFR 105 (740)
Q Consensus 87 ~~~~g~~~~A~~~~~~~~~ 105 (740)
|.+.|++++-++.+.-+++
T Consensus 562 ~~~~~~~~~~~~~~~~~~~ 580 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALK 580 (932)
T ss_pred HHHhhhHHHHHHHHHHHHH
Confidence 8889999999998887754
No 449
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.12 E-value=40 Score=32.86 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=18.8
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHh
Q 004644 535 GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECM 582 (740)
Q Consensus 535 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 582 (740)
|.++.|++.|...+... +|....+..-.+++...+.+..|++=+...
T Consensus 128 G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A 174 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFA 174 (377)
T ss_pred cchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhh
Confidence 44444444444444421 222223333333344444444444444433
No 450
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=33.77 E-value=4.5e+02 Score=25.48 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=10.0
Q ss_pred ChHHHHHHHHHHHHCCCCC
Q 004644 435 FHLDALKIFVLMTQEGKKA 453 (740)
Q Consensus 435 ~~~~A~~~~~~m~~~~~~p 453 (740)
+..+|..+|++....|..+
T Consensus 128 d~~~A~~~~~~Aa~~g~~~ 146 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVE 146 (292)
T ss_pred CHHHHHHHHHHHHHcCChh
Confidence 4455555555555555443
No 451
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=33.51 E-value=5.4e+02 Score=26.32 Aligned_cols=53 Identities=15% Similarity=0.067 Sum_probs=40.8
Q ss_pred CCCeecHHHHHHHHHc---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhh
Q 004644 417 RRNTVSWNALISGFLQ---NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA 469 (740)
Q Consensus 417 ~~~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~ 469 (740)
.++...+..+++++.+ ..+++.|+-++.+|+..|-.|....-..+.-+....|
T Consensus 243 Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIG 298 (436)
T COG2256 243 DKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIG 298 (436)
T ss_pred CCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc
Confidence 4556677778888864 6788999999999999998888777666666655544
No 452
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=32.66 E-value=1.5e+02 Score=31.86 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=13.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 004644 526 SLIAGYAINGNATEAIKLFEEMVM 549 (740)
Q Consensus 526 ~l~~~~~~~g~~~~A~~~~~~m~~ 549 (740)
++..+|...|++..+.++++.+..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~ 56 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFID 56 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc
Confidence 455555555555555555555554
No 453
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=31.60 E-value=92 Score=30.04 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 004644 423 WNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLAC 460 (740)
Q Consensus 423 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 460 (740)
|+.-|....+.||.++|+.++++..+.|..--..+|..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 55677777888888888888888888887665555543
No 454
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=31.26 E-value=1e+02 Score=18.20 Aligned_cols=26 Identities=12% Similarity=0.236 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHhHccCCCCCcchHHHH
Q 004644 639 NIKLGRIAVEKLSELEPQKTSCYALLS 665 (740)
Q Consensus 639 ~~~~a~~~~~~~~~~~p~~~~~~~~l~ 665 (740)
.++.|..++++.+...|+ +..|...+
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 467888999999988876 44555443
No 455
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=31.15 E-value=3.3e+02 Score=23.15 Aligned_cols=78 Identities=10% Similarity=0.164 Sum_probs=50.3
Q ss_pred HHHHHHHHhhccCCHHHHHHHhcccCC---------CCcchHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCChHHHHH
Q 004644 492 VGNSLITMYAKCGRIQNAELLFKDADP---------VDVISWNSLIAGYAINGN-ATEAIKLFEEMVMEGVAPDPVTFIG 561 (740)
Q Consensus 492 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~ 561 (740)
..|+++.-...-+.+.....+++.+.. .+..+|.++..+.....- ---+..+|.-|.+.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 346666666666666666666666542 233567777777755444 3346677777777777777777777
Q ss_pred HHHhhccc
Q 004644 562 VLSACSHV 569 (740)
Q Consensus 562 ll~a~~~~ 569 (740)
++.+|.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 77776654
No 456
>PF13934 ELYS: Nuclear pore complex assembly
Probab=30.97 E-value=4.4e+02 Score=24.52 Aligned_cols=105 Identities=18% Similarity=0.215 Sum_probs=56.7
Q ss_pred HHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhh
Q 004644 524 WNSLIAGY--AINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDL 601 (740)
Q Consensus 524 ~~~l~~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 601 (740)
+...+.++ .-++++++|++.+-.- .+.|+... -++.++...|+.+.|..+++.+.-. -.+.+....+...
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p~---l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVGPP---LSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcCCC---CCCHHHHHHHHHH
Confidence 33444443 4456777777766221 22333222 3555556678888888888765321 1112222333333
Q ss_pred hhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004644 602 LSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMH 637 (740)
Q Consensus 602 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 637 (740)
...|.+.||..+.+....+-....|..++..|...
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEE 185 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHH
Confidence 55678888888887765322344666666666543
No 457
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=30.97 E-value=3.5e+02 Score=29.34 Aligned_cols=68 Identities=10% Similarity=0.236 Sum_probs=40.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcccCC------HHHHHHHHHHHHccCCH------HHHHHHHHhhCCCCCeecHHHHHHH
Q 004644 362 VMIKGYAQCGRMDEAINLFRQMVNKD------IVTWNTMIAGYAQIRQM------DDAVKIFEEMGKRRNTVSWNALISG 429 (740)
Q Consensus 362 ~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~~li~~ 429 (740)
+|..+|..+|++-.+.++++.....+ ...+|..+....+.|.+ +.|.+.+++....-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 67777777777777777777765321 34455556666666653 3455555555545555566555544
No 458
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=30.29 E-value=2.1e+02 Score=23.45 Aligned_cols=54 Identities=13% Similarity=0.242 Sum_probs=37.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHH
Q 004644 610 EAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYAL 663 (740)
Q Consensus 610 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 663 (740)
+++.-+-.+..-|++.+..+-+.+|++-+|+..|.+.++-+-..-+..-..|-.
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y 123 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPY 123 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 334334444567888888888999999999999999988876555544434433
No 459
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=29.84 E-value=2e+02 Score=23.00 Aligned_cols=27 Identities=11% Similarity=0.324 Sum_probs=22.8
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHhccc
Q 004644 173 SWNSMLSGYTKNGEMHLASKFFEAMEE 199 (740)
Q Consensus 173 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 199 (740)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588888899999999999999887764
No 460
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=29.40 E-value=1.1e+02 Score=29.64 Aligned_cols=40 Identities=28% Similarity=0.405 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 004644 524 WNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVL 563 (740)
Q Consensus 524 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 563 (740)
|+..|....+.|+.++|+.++++..+.|+.--..+|...+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 6788999999999999999999999998766555665433
No 461
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=28.77 E-value=4e+02 Score=25.72 Aligned_cols=179 Identities=9% Similarity=0.005 Sum_probs=0.0
Q ss_pred HHCCCCCCHHHHHHHHHHhhhhhhhH-HHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCH--HHHHHHhcccC------
Q 004644 447 TQEGKKADHSTLACALSACAHLAALQ-LGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRI--QNAELLFKDAD------ 517 (740)
Q Consensus 447 ~~~~~~p~~~~~~~~l~~~~~~~~~~-~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~------ 517 (740)
+......+...+.-+++.|.+.|+++ ...++.....+.|...-...|..---+-...|.- ...+.+.+.+.
T Consensus 44 qasD~~~~~kvl~~i~dLl~S~~~~~~Lneql~~L~kKhGQlk~sI~~MIq~vmEylKg~~dl~t~i~~ietlr~VtEgk 123 (439)
T COG5071 44 QASDTSTNTKVLIYIADLLFSAGDFQGLNEQLVSLFKKHGQLKQSITSMIQHVMEYLKGIDDLKTKINLIETLRTVTEGK 123 (439)
T ss_pred hhccHHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHcchHHHHHHHHHHHHHHhccCcccccchHhHHHHHHHHhcCc
Q ss_pred ----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHH------------HHhhcccchHHHHHHHHHH
Q 004644 518 ----PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGV------------LSACSHVGLVDGGLKLFEC 581 (740)
Q Consensus 518 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l------------l~a~~~~g~~~~a~~~~~~ 581 (740)
......-.-+...+-..|+.+.|.+++ +.....||.++ ++.|...+++-.|--+-+.
T Consensus 124 IFvEvERariT~~L~~ikee~Gdi~sA~Dil-------cn~pVETygs~~~Sekv~fiLEQ~rL~vl~~Dy~~A~~~~kK 196 (439)
T COG5071 124 IFVEVERARLTQLLSQIKEEQGDIKSAQDIL-------CNEPVETYGSFDLSEKVAFILEQVRLFLLRSDYYMASTYTKK 196 (439)
T ss_pred eEEehhHHHHHHHHHHHHHHhcchhHHHHHH-------hcCchhhccchhHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Q ss_pred hhhhcCCcCC-----cchHHHHhhhhhccCChHHHH----HHHHhCCCCCCHHHHHHHHH
Q 004644 582 MTEVYAIEPL-----VEHYACMIDLLSRAGRLDEAF----EMVKGMKIKPNAGIWGTLLG 632 (740)
Q Consensus 582 ~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~----~~~~~~~~~p~~~~~~~l~~ 632 (740)
+.+++=-+|+ ..-|..++..-.....+-++- ++++......|+..|.-.++
T Consensus 197 I~KK~Fe~~d~~slKlkyYeL~V~i~Lh~R~Yl~v~~y~~~vY~t~~~~~d~Akwk~VLS 256 (439)
T COG5071 197 INKKFFEKEDVQSLKLKYYELKVRIGLHDRAYLDVCKYYRAVYDTAVVQEDPAKWKEVLS 256 (439)
T ss_pred HHHHHhccccHHHHHHHHHHHhheeecccHHHHHHHHHHHHHHHHHHhccCcccccchhh
No 462
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=27.80 E-value=2.6e+02 Score=23.02 Aligned_cols=41 Identities=15% Similarity=0.279 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhCCCCC-hhHHHHHHHHhhccCCHHHHHHHhc
Q 004644 474 GRQIHHLAIKSGYVND-LFVGNSLITMYAKCGRIQNAELLFK 514 (740)
Q Consensus 474 a~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 514 (740)
+..++..+...|+-.. ...|..-...+.+.|++++|.++|+
T Consensus 82 ~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 82 PREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344444444443322 2334444555555556666555554
No 463
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.71 E-value=9.7e+02 Score=28.43 Aligned_cols=107 Identities=16% Similarity=0.102 Sum_probs=64.4
Q ss_pred HHHHHhhccCCHHHHHHHhcccCC------------------------------CC--cchHHHHHHHHHhcCChHHHHH
Q 004644 495 SLITMYAKCGRIQNAELLFKDADP------------------------------VD--VISWNSLIAGYAINGNATEAIK 542 (740)
Q Consensus 495 ~l~~~~~~~g~~~~A~~~~~~~~~------------------------------~~--~~~~~~l~~~~~~~g~~~~A~~ 542 (740)
.+.-+|..+|..-+|...|.+... +. ..-|...+..+.+++..+.+.+
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQ 1004 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQ 1004 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 344567888888888888865420 00 1124455666777777777777
Q ss_pred HHHHHHHCCCCCCh----HHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCC----cchHHHHhhhhhccCChH
Q 004644 543 LFEEMVMEGVAPDP----VTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL----VEHYACMIDLLSRAGRLD 609 (740)
Q Consensus 543 ~~~~m~~~~~~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~ 609 (740)
+...+++. ++|+. .+++.+..-....|.+-+|...+-+ +|+ ......++..+..+|.++
T Consensus 1005 lA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~-------npdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1005 LAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR-------NPDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc-------CCcHHHHHHHHHHHHHHHHhccchH
Confidence 77777664 33332 2455566666667777666655432 233 334556677777777664
No 464
>PRK14700 recombination factor protein RarA; Provisional
Probab=27.59 E-value=5.9e+02 Score=24.88 Aligned_cols=70 Identities=16% Similarity=0.104 Sum_probs=50.0
Q ss_pred CCCeecHHHHHHHHHc---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhh-----hhHHHHHHHHHHHHhCC
Q 004644 417 RRNTVSWNALISGFLQ---NEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLA-----ALQLGRQIHHLAIKSGY 486 (740)
Q Consensus 417 ~~~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~-----~~~~a~~~~~~~~~~g~ 486 (740)
..+...+..+++++.+ ..+++.|+-++.+|++.|..|....-..++.++...| .+..|...++.....|+
T Consensus 120 Dk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 120 HREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred cCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3445556667888764 7789999999999999999999888888887777666 33344444444444454
No 465
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=27.41 E-value=9.8e+02 Score=27.38 Aligned_cols=214 Identities=14% Similarity=0.037 Sum_probs=109.5
Q ss_pred HHHHHcCCHHHHHHHHHhccc----CCH-------HHHHHHHH-HHHccCCHHHHHHHHHhhCC-------CCCeecHHH
Q 004644 365 KGYAQCGRMDEAINLFRQMVN----KDI-------VTWNTMIA-GYAQIRQMDDAVKIFEEMGK-------RRNTVSWNA 425 (740)
Q Consensus 365 ~~~~~~g~~~~A~~~~~~~~~----~~~-------~~~~~l~~-~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~ 425 (740)
.......++++|..++.+... ++. ..|+.+-. .....|+++.|.++.+.... .+..+.+..
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 344556778888887777632 221 23444332 23446778888777766511 234455666
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHH-----HHhhhhhhhHHHHH--HHHHHHHh-CC-----CCChhH
Q 004644 426 LISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACAL-----SACAHLAALQLGRQ--IHHLAIKS-GY-----VNDLFV 492 (740)
Q Consensus 426 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l-----~~~~~~~~~~~a~~--~~~~~~~~-g~-----~~~~~~ 492 (740)
+..+..-.|++++|..+..+..+..-+-+...+.... ..|...|....+.+ .+...... .. .+-..+
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 7777778888988888877665543333333332222 22444553322222 12222111 00 112234
Q ss_pred HHHHHHHhhccCCHHHHHHHhccc-------CCCCcchH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHH
Q 004644 493 GNSLITMYAKCGRIQNAELLFKDA-------DPVDVISW---NSLIAGYAINGNATEAIKLFEEMVMEGVAPD-PVTFIG 561 (740)
Q Consensus 493 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ 561 (740)
...+...+.+ ++.+..-.... .+.....| ..|+..+...|+.++|...+.++......+. .+-|.+
T Consensus 583 r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a 659 (894)
T COG2909 583 RAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLA 659 (894)
T ss_pred HHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHH
Confidence 4444455544 33332222211 12222222 3567778889999999999998877533332 112221
Q ss_pred ---HHH--hhcccchHHHHHHHHHH
Q 004644 562 ---VLS--ACSHVGLVDGGLKLFEC 581 (740)
Q Consensus 562 ---ll~--a~~~~g~~~~a~~~~~~ 581 (740)
.+. -....|+..++.....+
T Consensus 660 ~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 660 AAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHhhHHHhcccCCHHHHHHHHHh
Confidence 221 23457777777776665
No 466
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=27.29 E-value=99 Score=21.58 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=17.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 004644 526 SLIAGYAINGNATEAIKLFEEMVM 549 (740)
Q Consensus 526 ~l~~~~~~~g~~~~A~~~~~~m~~ 549 (740)
..+.+|.+.|++++|.+..+++.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 457788888888888888877654
No 467
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=27.26 E-value=3.6e+02 Score=22.26 Aligned_cols=43 Identities=7% Similarity=0.147 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHCCCCCChH-HHHHHHHhhcccchHHHHHHHHHH
Q 004644 539 EAIKLFEEMVMEGVAPDPV-TFIGVLSACSHVGLVDGGLKLFEC 581 (740)
Q Consensus 539 ~A~~~~~~m~~~~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~ 581 (740)
.+.++|+.|...|+--... .|..-...+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6777777777766555543 445555555666666666666653
No 468
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.02 E-value=2.4e+02 Score=26.65 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=14.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHhc
Q 004644 362 VMIKGYAQCGRMDEAINLFRQM 383 (740)
Q Consensus 362 ~l~~~~~~~g~~~~A~~~~~~~ 383 (740)
.+..-|.+.|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4555566666666666666655
No 469
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=26.78 E-value=5.3e+02 Score=24.08 Aligned_cols=47 Identities=23% Similarity=0.376 Sum_probs=35.1
Q ss_pred HHHhcccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH
Q 004644 510 ELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557 (740)
Q Consensus 510 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 557 (740)
..+|+-+..|.+.....++..+. .++.++|.+++.++-+.|+.|...
T Consensus 228 enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 228 ENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred hhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH
Confidence 44555555777777777776554 478999999999999999888654
No 470
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=26.50 E-value=4.6e+02 Score=26.69 Aligned_cols=53 Identities=11% Similarity=-0.105 Sum_probs=31.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChHHHH----HHHHhh--cccchHHHHHHHHHH
Q 004644 529 AGYAINGNATEAIKLFEEMVMEGVAPDPVTFI----GVLSAC--SHVGLVDGGLKLFEC 581 (740)
Q Consensus 529 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~----~ll~a~--~~~g~~~~a~~~~~~ 581 (740)
..+...+++..|.++|+++.....+|....+. .+..+| ...-++++|.+.++.
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34567788999999999998875555443322 222222 224455666666653
No 471
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=26.01 E-value=2.5e+02 Score=22.49 Aligned_cols=21 Identities=24% Similarity=0.570 Sum_probs=12.7
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 004644 529 AGYAINGNATEAIKLFEEMVM 549 (740)
Q Consensus 529 ~~~~~~g~~~~A~~~~~~m~~ 549 (740)
..+...|++-+|+++.++++.
T Consensus 4 ~~~~~rGnhiKAL~iied~i~ 24 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLIS 24 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 345556666666666666655
No 472
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=25.86 E-value=7.6e+02 Score=25.57 Aligned_cols=70 Identities=16% Similarity=0.324 Sum_probs=48.4
Q ss_pred HHHHHHHhcCChhHHHHHHhhcCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHc
Q 004644 331 AMISGYVQNKRMDEANQIFDKIGTH---DVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQ 400 (740)
Q Consensus 331 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 400 (740)
.++..|...|++.+|.+..+++.-| ...++.+++.+..+.|+-..-+.+++..-.....|-+.|-.+|.+
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~R 586 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhh
Confidence 4566777777888887777776544 445677777777777777777777776666666666666666544
No 473
>PRK07914 hypothetical protein; Reviewed
Probab=25.74 E-value=6.6e+02 Score=24.87 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=19.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC
Q 004644 533 INGNATEAIKLFEEMVMEGVAPD 555 (740)
Q Consensus 533 ~~g~~~~A~~~~~~m~~~~~~p~ 555 (740)
..|+..+|+.+++++...|..|-
T Consensus 207 ~~g~~~~A~~~l~~L~~~ge~p~ 229 (320)
T PRK07914 207 VAGDVAGAAEALRWAMMRGEPHV 229 (320)
T ss_pred HCCCHHHHHHHHHHHHHCCCchH
Confidence 45889999999999988887664
No 474
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=25.37 E-value=1.7e+02 Score=22.05 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=21.3
Q ss_pred HcCCHHHHHHHHHhcccCCHHHHHHHHHHHHccCCHH
Q 004644 369 QCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMD 405 (740)
Q Consensus 369 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 405 (740)
...+.+++..+++.....++.+|.....++...|...
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 3344556666666666666666666666665555433
No 475
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=25.16 E-value=1e+02 Score=29.66 Aligned_cols=76 Identities=11% Similarity=0.031 Sum_probs=53.4
Q ss_pred CcchHHHHhhhhhccCChHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHH
Q 004644 591 LVEHYACMIDLLSRAGRLDEAFEMVKGM-KIKP-NAGIWGT-LLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSN 666 (740)
Q Consensus 591 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 666 (740)
++..|...+.-..+.|.+.+.-.++.+. ...| |...|-. -..-+..+++++.++..+.+.+.++|++|..|.....
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 4667777766666667777777766554 4455 4446643 2223567899999999999999999999988765543
No 476
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=24.88 E-value=2.4e+02 Score=21.25 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=34.1
Q ss_pred HHhhCCCCchhHHHHHHHHHHhcCChhHHHHHHhhcCCCChhhHHHHHHHHHHcCCHHH
Q 004644 317 LLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDE 375 (740)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 375 (740)
++..+...++-.....-.......+.+++.++++.+....+.+|..+.+++...|...-
T Consensus 21 v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 21 LWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDL 79 (84)
T ss_pred HHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHH
Confidence 44444445544444444444445556667777776666677777777777666665443
No 477
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=24.85 E-value=1.1e+02 Score=30.81 Aligned_cols=46 Identities=11% Similarity=0.039 Sum_probs=22.9
Q ss_pred HHHhcCCHHHHHHHHHHhHccCCCCCcchHHHHHHHHhcCCchHHH
Q 004644 633 ACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVE 678 (740)
Q Consensus 633 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 678 (740)
+|...++.+.|+.-..+.+-++|..+-.+..-+-++-...+|.+|.
T Consensus 237 CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAa 282 (569)
T PF15015_consen 237 CYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAA 282 (569)
T ss_pred hhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555444444444444445555543
No 478
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=24.08 E-value=2.2e+02 Score=27.94 Aligned_cols=84 Identities=13% Similarity=0.110 Sum_probs=47.0
Q ss_pred HHHHhhccCCHHHHHHHhcccC-----C--CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHhhc
Q 004644 496 LITMYAKCGRIQNAELLFKDAD-----P--VDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV-TFIGVLSACS 567 (740)
Q Consensus 496 l~~~~~~~g~~~~A~~~~~~~~-----~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~a~~ 567 (740)
=++-|.+..++..|...|.+.. . .+.+.|+.-..+....|++..|+.-..+.+. +.|+.. .+..-..++.
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~Akc~~ 164 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRGAKCLL 164 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhhhHHHH
Confidence 3555666667777777666443 1 2335566666666666777777766666665 456544 3333333444
Q ss_pred ccchHHHHHHHHHH
Q 004644 568 HVGLVDGGLKLFEC 581 (740)
Q Consensus 568 ~~g~~~~a~~~~~~ 581 (740)
.....++|..+.++
T Consensus 165 eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 165 ELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHhh
Confidence 45555555554443
No 479
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=23.88 E-value=2.1e+02 Score=30.41 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=16.0
Q ss_pred CCCcchHHHHHHHHhcCCchHH
Q 004644 656 QKTSCYALLSNMHAEAGRWDEV 677 (740)
Q Consensus 656 ~~~~~~~~l~~~~~~~g~~~~a 677 (740)
+||.+|..|...|....+|+|.
T Consensus 405 ~Dpecfa~lLrFYDgIC~WEEG 426 (618)
T PF05053_consen 405 RDPECFANLLRFYDGICKWEEG 426 (618)
T ss_dssp G-HHHHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHhhceecccC
Confidence 4677777777788888888774
No 480
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=23.87 E-value=1.5e+02 Score=21.37 Aligned_cols=31 Identities=10% Similarity=0.010 Sum_probs=19.1
Q ss_pred CHHHHHHHhcccC---CCCcchHHHHHHHHHhcC
Q 004644 505 RIQNAELLFKDAD---PVDVISWNSLIAGYAING 535 (740)
Q Consensus 505 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g 535 (740)
+.+.|..++..+. .+.+..||++...+.+|+
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHK 45 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHcc
Confidence 3456666666555 455667777776666553
No 481
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=23.57 E-value=6.5e+02 Score=24.04 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=45.7
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHhcccCCHHHHHHHHHHHHccCCHHHHHHHHHhhCCCCCeecHHHHHHHHHcCC
Q 004644 355 HDVVCWNVMIKGYAQCGRMDEAINLFRQMVNKDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTVSWNALISGFLQNE 434 (740)
Q Consensus 355 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~~ 434 (740)
.|+.....+...|.+.|++.+|...|-..-.++...+..++.-....|...++--+.-+ .+-.|...+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~R------------aVL~yL~l~ 155 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIAR------------AVLQYLCLG 155 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHH------------HHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHH------------HHHHHHHhc
Confidence 37777888888888888888888877655444444443344433334433333222222 244566667
Q ss_pred ChHHHHHHHHHHHHC
Q 004644 435 FHLDALKIFVLMTQE 449 (740)
Q Consensus 435 ~~~~A~~~~~~m~~~ 449 (740)
+...|...+....+.
T Consensus 156 n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 156 NLRDANELFDTFTSK 170 (260)
T ss_dssp BHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 777777766655443
No 482
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=23.54 E-value=1.1e+03 Score=26.49 Aligned_cols=174 Identities=12% Similarity=0.155 Sum_probs=95.1
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHhccc-CCHHH----------HHHHHHHHHccCCHHHHHHHHHhh-----CCCCCe
Q 004644 357 VVCWNVMIKGYAQCGRMDEAINLFRQMVN-KDIVT----------WNTMIAGYAQIRQMDDAVKIFEEM-----GKRRNT 420 (740)
Q Consensus 357 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~----------~~~l~~~~~~~~~~~~A~~~~~~~-----~~~~~~ 420 (740)
+.+...++-.|....+++..+++.+.+.. ||..- |.-.+.--.+-|+-++|+.+.-.+ ...||.
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm 280 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDM 280 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCce
Confidence 34555666677777788888877777654 32211 111112223346677777665554 223444
Q ss_pred ec-----HHH--HHHHHHcCCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCCh
Q 004644 421 VS-----WNA--LISGFLQNEFHLDALKIFVLMTQEGKKADHS---TLACALSACAHLAALQLGRQIHHLAIKSGYVNDL 490 (740)
Q Consensus 421 ~~-----~~~--li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 490 (740)
.. |.- +-+.|...+..+.|.++|++.- .+.|+.. .+..++.+..+ .++...++-.
T Consensus 281 ~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF--eveP~~~sGIN~atLL~aaG~--~Fens~Elq~----------- 345 (1226)
T KOG4279|consen 281 YCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF--EVEPLEYSGINLATLLRAAGE--HFENSLELQQ----------- 345 (1226)
T ss_pred eeeechhhhhhhhccCCcchhhHHHHHHHHHHHh--ccCchhhccccHHHHHHHhhh--hccchHHHHH-----------
Confidence 33 221 1223445666778888888754 3456543 24444443322 1222111111
Q ss_pred hHHHHHHHHhhccCCHHHHHHHhcccCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH
Q 004644 491 FVGNSLITMYAKCGRIQNAELLFKDADPVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPV 557 (740)
Q Consensus 491 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 557 (740)
+...|-..+++.|.++.-.++++- .....+-...+++.+|++.-+.|.+. +|...
T Consensus 346 -IgmkLn~LlgrKG~leklq~YWdV---------~~y~~asVLAnd~~kaiqAae~mfKL--k~P~W 400 (1226)
T KOG4279|consen 346 -IGMKLNSLLGRKGALEKLQEYWDV---------ATYFEASVLANDYQKAIQAAEMMFKL--KPPVW 400 (1226)
T ss_pred -HHHHHHHHhhccchHHHHHHHHhH---------HHhhhhhhhccCHHHHHHHHHHHhcc--CCcee
Confidence 223344567788888888777752 22334445568999999999999884 44433
No 483
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=23.34 E-value=3.6e+02 Score=28.33 Aligned_cols=60 Identities=13% Similarity=0.343 Sum_probs=36.5
Q ss_pred cchHHHHhhhhhccCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHccC
Q 004644 592 VEHYACMIDLLSRAGRLDEAFEMVKGMKIKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELE 654 (740)
Q Consensus 592 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 654 (740)
+..|....--|...++|++|.++.+... +...|-++......+.+..-++.+|.-+.+++
T Consensus 573 V~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~id 632 (737)
T KOG1524|consen 573 VNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQID 632 (737)
T ss_pred ccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchh
Confidence 3334555555666777777777776543 44567666666666666666666665555443
No 484
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.27 E-value=2.6e+02 Score=24.54 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=28.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchH
Q 004644 526 SLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLV 572 (740)
Q Consensus 526 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~ 572 (740)
.++..+...+++-.|.++++.+.+.+..++..|.-..|..+...|.+
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 34444444555667777888877777666666655555555555543
No 485
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.15 E-value=9.7e+02 Score=25.86 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=8.5
Q ss_pred cchHHHHHHHHh
Q 004644 659 SCYALLSNMHAE 670 (740)
Q Consensus 659 ~~~~~l~~~~~~ 670 (740)
.++..+..+|+.
T Consensus 484 pal~~lv~lY~~ 495 (665)
T KOG2422|consen 484 PALMLLVKLYAN 495 (665)
T ss_pred hHHHHHHHHHHh
Confidence 457778888774
No 486
>PRK00971 glutaminase; Provisional
Probab=23.07 E-value=7.3e+02 Score=24.40 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=18.1
Q ss_pred HHHHHHhhCCCCCeecHHHHHHH
Q 004644 407 AVKIFEEMGKRRNTVSWNALISG 429 (740)
Q Consensus 407 A~~~~~~~~~~~~~~~~~~li~~ 429 (740)
...++++++..|+...||.++..
T Consensus 80 ~~~V~~~VG~EPSG~~FNSi~~L 102 (307)
T PRK00971 80 EEEVWQRVGKEPSGDPFNSLVQL 102 (307)
T ss_pred HHHHHHHhCCCCCCCCCcchhhh
Confidence 36788888889998888887643
No 487
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=23.05 E-value=5.3e+02 Score=23.40 Aligned_cols=90 Identities=10% Similarity=0.057 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHccCCCCCc-chHHHHHHHHhcCCchHHHHHHHHHhhCCCccCCcccEEEEcCEE
Q 004644 626 IWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTS-CYALLSNMHAEAGRWDEVEKVRVSMEGSGAQKQPGCSWIEVKNQI 704 (740)
Q Consensus 626 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~~~~~~~ 704 (740)
....++..|...||++.|-+++--++...|-|.. .|-.=+.++.+.+.-....+.++.|...-.....-..........
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~~~ 122 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRIIA 122 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhccc
Confidence 3566777788888888888888888876655533 344444566666666655566666543222111111111112234
Q ss_pred EEEecCCCCCC
Q 004644 705 HTFLSGDPKQC 715 (740)
Q Consensus 705 ~~f~~~~~~~~ 715 (740)
+.|..|.+.|-
T Consensus 123 pvfrsGs~t~t 133 (199)
T PF04090_consen 123 PVFRSGSRTHT 133 (199)
T ss_pred ccccCCCcccc
Confidence 67888888773
No 488
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=23.00 E-value=2.7e+02 Score=24.72 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=17.5
Q ss_pred hhhhhccCChHHHHHHHHhCCCCCCHHHH
Q 004644 599 IDLLSRAGRLDEAFEMVKGMKIKPNAGIW 627 (740)
Q Consensus 599 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 627 (740)
+-.|.+.|.+++|.++++..-..|+....
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~~~~ 146 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPESQKL 146 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCchhH
Confidence 44566777777777777665445544433
No 489
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=22.97 E-value=9.2e+02 Score=25.57 Aligned_cols=161 Identities=15% Similarity=0.162 Sum_probs=81.6
Q ss_pred CCCeecHHHHHHHHHcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHH
Q 004644 417 RRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSL 496 (740)
Q Consensus 417 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 496 (740)
..|.....+++..+..+..+.-...+..+|..-| -+...+..++..+... ..+.--.++.++.+..+. |+....-|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 3455566667777777776666667777776654 3445556666666655 344445566666665543 34444455
Q ss_pred HHHhhccCCHHHHHHHhcccC----C--CCc---chHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChHHHHHHHHhh
Q 004644 497 ITMYAKCGRIQNAELLFKDAD----P--VDV---ISWNSLIAGYAINGNATEAIKLFEEMVME-GVAPDPVTFIGVLSAC 566 (740)
Q Consensus 497 ~~~~~~~g~~~~A~~~~~~~~----~--~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~a~ 566 (740)
++.|.+ ++.+.+...|.++. | .+. ..|..+... -..+.+..+.+..++... |..--.+.+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 555555 66666666665543 1 111 133333321 123344444444444332 2222233333333445
Q ss_pred cccchHHHHHHHHHHhhh
Q 004644 567 SHVGLVDGGLKLFECMTE 584 (740)
Q Consensus 567 ~~~g~~~~a~~~~~~~~~ 584 (740)
+...++++|++++..+.+
T Consensus 216 s~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 216 SENENWTEAIRILKHILE 233 (711)
T ss_pred ccccCHHHHHHHHHHHhh
Confidence 555555555555555444
No 490
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=22.94 E-value=1e+03 Score=26.05 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=23.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 004644 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAI 482 (740)
Q Consensus 441 ~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~ 482 (740)
...+.+..+-.-.+.....-++..|.+.|-.+.++.+...+-
T Consensus 391 ~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~ 432 (566)
T PF07575_consen 391 ERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILG 432 (566)
T ss_dssp HHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444444455666777788888888777777766543
No 491
>PRK12357 glutaminase; Reviewed
Probab=22.87 E-value=7.5e+02 Score=24.49 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=17.6
Q ss_pred HHHHHHhhCCCCCeecHHHHHH
Q 004644 407 AVKIFEEMGKRRNTVSWNALIS 428 (740)
Q Consensus 407 A~~~~~~~~~~~~~~~~~~li~ 428 (740)
...++++++..|+...||.++.
T Consensus 89 ~~~V~~~VG~EPSG~~FNSi~~ 110 (326)
T PRK12357 89 ISYVLERVDVEPTGDAFNSIIR 110 (326)
T ss_pred HHHHHHHhCCCCCCCCcchhhh
Confidence 3578888888999888888764
No 492
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=22.62 E-value=1.2e+03 Score=26.64 Aligned_cols=17 Identities=18% Similarity=0.452 Sum_probs=12.9
Q ss_pred hccCChHHHHHHHHhCC
Q 004644 603 SRAGRLDEAFEMVKGMK 619 (740)
Q Consensus 603 ~~~g~~~~A~~~~~~~~ 619 (740)
...|++++|+..++.+.
T Consensus 718 y~~~~~e~aL~~le~l~ 734 (835)
T KOG2168|consen 718 YHNGEWEEALSILEHLD 734 (835)
T ss_pred HhhhHHHHHHHHHHHHh
Confidence 36788899988887763
No 493
>PF14649 Spatacsin_C: Spatacsin C-terminus
Probab=22.47 E-value=7.4e+02 Score=24.25 Aligned_cols=119 Identities=12% Similarity=0.140 Sum_probs=62.5
Q ss_pred HHHHHHHHCCCCCChHHHHHHH---HhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHhC
Q 004644 542 KLFEEMVMEGVAPDPVTFIGVL---SACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKGM 618 (740)
Q Consensus 542 ~~~~~m~~~~~~p~~~~~~~ll---~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 618 (740)
.+++.+....-.|.......++ .++......|.-..+++.....-..-.....|..++.++..-|++.+-.-+|+-+
T Consensus 6 ~Ll~~~~~~~~~~~~~~VELLI~AH~cf~~~c~meGi~~vl~~~~~~~~~l~~~~~~~llvRLltGi~ry~em~yifd~L 85 (296)
T PF14649_consen 6 KLLELADSSHKSQLSCIVELLIRAHDCFTLSCSMEGIAVVLQAAKSLVNHLAAEGDWSLLVRLLTGIGRYREMTYIFDIL 85 (296)
T ss_pred HHHHHHhccCCCCccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHccCcHHHHHHHHHHH
Confidence 3444443332234555555555 3345556666666666655442222233567888999999999988766666554
Q ss_pred CCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHhHccCCCCCcchHHHH
Q 004644 619 KIKPNAGIWGTLLGACR-MHQNIKLGRIAVEKLSELEPQKTSCYALLS 665 (740)
Q Consensus 619 ~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 665 (740)
. +.+ .+..|++-.. ..+.+..| +.+-+....|.|.+.+..++
T Consensus 86 ~-~n~--qfE~LL~k~~d~~~~lk~a--ll~ylk~~~P~d~e~~~mv~ 128 (296)
T PF14649_consen 86 I-END--QFELLLRKGIDKVNGLKMA--LLDYLKRCCPEDKEKFSMVA 128 (296)
T ss_pred H-HcC--hHHHHHhccccccchHHHH--HHHHHHhcCCCCHHHHHHHH
Confidence 2 111 1444443211 11223322 33344456899887665544
No 494
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=22.41 E-value=2.5e+02 Score=20.44 Aligned_cols=40 Identities=10% Similarity=0.037 Sum_probs=29.5
Q ss_pred HcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhhhhh
Q 004644 431 LQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAA 470 (740)
Q Consensus 431 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~ 470 (740)
...++.+.+.+++++....|..|.......+..+....|.
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4578888899999998888888888777666666555543
No 495
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.83 E-value=3.4e+02 Score=21.21 Aligned_cols=31 Identities=10% Similarity=0.053 Sum_probs=21.8
Q ss_pred CCCCcchHHHHHHHHhcCCchHHHHHHHHHh
Q 004644 655 PQKTSCYALLSNMHAEAGRWDEVEKVRVSME 685 (740)
Q Consensus 655 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 685 (740)
|--|+.+..|+-+|+..|+-|.|.+-|+.-+
T Consensus 69 ~vpPG~HAhLGlLys~~G~~e~a~~eFetEK 99 (121)
T COG4259 69 AVPPGYHAHLGLLYSNSGKDEQAVREFETEK 99 (121)
T ss_pred CCCCcHHHHHHHHHhhcCChHHHHHHHHHhh
Confidence 3446677777778888888777777776544
No 496
>PRK13342 recombination factor protein RarA; Reviewed
Probab=21.65 E-value=9.2e+02 Score=25.03 Aligned_cols=167 Identities=13% Similarity=0.077 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHC---CC-CCCHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhCCCCChhHHHHHHHHhhccCCHHHHH
Q 004644 435 FHLDALKIFVLMTQE---GK-KADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAE 510 (740)
Q Consensus 435 ~~~~A~~~~~~m~~~---~~-~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 510 (740)
..++...++...... ++ ..+......++..+ .|+...+..+.+.+... .-......+..+.
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~-------------~~~It~~~v~~~~ 216 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALG-------------VDSITLELLEEAL 216 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHc-------------cCCCCHHHHHHHH
Q ss_pred HHhcccCCCCcchHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccc-----hHHHHHHHHHHh
Q 004644 511 LLFKDADPVDVISWNSLIAGYAIN---GNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVG-----LVDGGLKLFECM 582 (740)
Q Consensus 511 ~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g-----~~~~a~~~~~~~ 582 (740)
.........+......++.++.+. ++.+.|+..+.+|++.|..|....-..+..++-..| ...-|...++..
T Consensus 217 ~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~ 296 (413)
T PRK13342 217 QKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAV 296 (413)
T ss_pred hhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHH
Q ss_pred hhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHh
Q 004644 583 TEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKG 617 (740)
Q Consensus 583 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 617 (740)
... |+..........+-.++.+-+-..+...+++
T Consensus 297 ~~~-g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~ 330 (413)
T PRK13342 297 ERI-GMPEGRIALAQAVIYLALAPKSNAAYTAINA 330 (413)
T ss_pred HHh-CCcHHHHHHHHHHHHHHcCCCccHHHHHHHH
No 497
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=21.63 E-value=1.1e+03 Score=25.86 Aligned_cols=183 Identities=17% Similarity=0.161 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhh
Q 004644 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLL 602 (740)
Q Consensus 523 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 602 (740)
.|..-+..+...++.. ....+.++..-.-.+.....-++..|...|..+.+.++++.+-.+ +
T Consensus 374 lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~----------------~ 435 (566)
T PF07575_consen 374 LWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQR----------------L 435 (566)
T ss_dssp THHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH----------------H
T ss_pred hHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------H
Confidence 4555444444333222 444444444322234445666777788888888777777765442 2
Q ss_pred hccCChHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHc--cCCCCCcchHHHHHHH--HhcCCchH
Q 004644 603 SRAGRLDEAFEMVKGMKIK--PNAGIWGTLLGACRMHQNIKLGRIAVEKLSE--LEPQKTSCYALLSNMH--AEAGRWDE 676 (740)
Q Consensus 603 ~~~g~~~~A~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~--~~~g~~~~ 676 (740)
.+.|++-+|+..+-+.... -+..+|. ++..|..+|... ...+.+.+.. .-.+.-..|..+...| .+.|++.+
T Consensus 436 ~~~~~~g~AL~~~~ra~d~~~v~~i~~~-ll~~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~ 513 (566)
T PF07575_consen 436 LKEGRYGEALSWFIRAGDYSLVTRIADR-LLEEYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFRE 513 (566)
T ss_dssp HHHHHHHHHHHHHH------------------------------------------------------------------
T ss_pred HHCCCHHHHHHHHHHCCCHHHHHHHHHH-HHHHHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHH
Confidence 2334444444444333211 1112222 222333333211 1111111100 0011222334444443 34588888
Q ss_pred HHHHHHHHhhCCCccCCcccEEEEcCEEEEEecCCCCCCChHHHHHHHHHH
Q 004644 677 VEKVRVSMEGSGAQKQPGCSWIEVKNQIHTFLSGDPKQCRTAEICNTLKTL 727 (740)
Q Consensus 677 a~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l 727 (740)
|.+.+-.+...+. .|..=|..+-.+..-+...+...=...+++..++.|
T Consensus 514 Aa~~Lv~Ll~~~~--~Pk~f~~~LL~d~lplL~~~~~~f~~~~~~~ll~~L 562 (566)
T PF07575_consen 514 AASLLVSLLKSPI--APKSFWPLLLCDALPLLESDEVIFSSSDTYELLRCL 562 (566)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHCCCC--CcHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Confidence 8877655554333 465566666555555554432222334444444443
No 498
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=21.47 E-value=1.1e+02 Score=29.37 Aligned_cols=80 Identities=9% Similarity=0.074 Sum_probs=49.7
Q ss_pred CCCChH-HHHHHHHhhcccchHHHHHHHHHHhhhhcCCcCCcchHHHHhhhhhccCChHHHHHHHHh-CCCCC-CHHHHH
Q 004644 552 VAPDPV-TFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPLVEHYACMIDLLSRAGRLDEAFEMVKG-MKIKP-NAGIWG 628 (740)
Q Consensus 552 ~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~ 628 (740)
..|+.. .|...+.--...|.+.+...+|.+..+.++.+.+.-.+.| ..-|...++++.+..+|.. +...| ++.+|-
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c-~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCC-AFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeec-cchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 345555 4444444345577888899999998886554444443333 3345667889999888844 55555 455776
Q ss_pred HHHH
Q 004644 629 TLLG 632 (740)
Q Consensus 629 ~l~~ 632 (740)
....
T Consensus 181 eyfr 184 (435)
T COG5191 181 EYFR 184 (435)
T ss_pred HHHH
Confidence 5543
No 499
>TIGR03814 Gln_ase glutaminase A. This family describes the enzyme glutaminase, from a larger family that includes serine-dependent beta-lactamases and penicillin-binding proteins. Many bacteria have two isozymes. This model is based on selected known glutaminases and their homologs within prokaryotes, with the exclusion of highly-derived (long branch) and architecturally varied homologs, so as to achieve conservative assignments. A sharp drop in scores occurs below 250, and cutoffs are set accordingly. The enzyme converts glutamine to glutamate, with the release of ammonia. Members tend to be described as glutaminase A (glsA), where B (glsB) is unknown and may not be homologous (as in Rhizobium etli). Some species have two isozymes that may both be designated A (GlsA1 and GlsA2).
Probab=21.24 E-value=7.8e+02 Score=24.09 Aligned_cols=22 Identities=14% Similarity=0.409 Sum_probs=17.6
Q ss_pred HHHHHHhhCCCCCeecHHHHHH
Q 004644 407 AVKIFEEMGKRRNTVSWNALIS 428 (740)
Q Consensus 407 A~~~~~~~~~~~~~~~~~~li~ 428 (740)
...++++++..|+...||.++.
T Consensus 73 ~~~V~~~VG~ePSG~~FNsi~~ 94 (300)
T TIGR03814 73 EDEVWERVGVEPSGDPFNSIVQ 94 (300)
T ss_pred HHHHHHHhCCCCCCCCccchhh
Confidence 3568888888999888888764
No 500
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=21.22 E-value=6.5e+02 Score=24.96 Aligned_cols=90 Identities=12% Similarity=0.170 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCChH--HHHHHHHhhcccchHHHHHHHHHHhhh-----hcCCcCC-
Q 004644 523 SWNSLIAGYAINGNATEAIKLFEEMVME---GVAPDPV--TFIGVLSACSHVGLVDGGLKLFECMTE-----VYAIEPL- 591 (740)
Q Consensus 523 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~-----~~~~~p~- 591 (740)
....++....+.++.++|++.++++.+. --.|+.+ .......++...|+.+++++.+....+ . ++.|+
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~-~v~~~V 155 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLD-GVTSNV 155 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccc-CCChhh
Q ss_pred -cchHHHHhhhhhccCChHHHHH
Q 004644 592 -VEHYACMIDLLSRAGRLDEAFE 613 (740)
Q Consensus 592 -~~~~~~l~~~~~~~g~~~~A~~ 613 (740)
..-|..=...|-+.|++..+..
T Consensus 156 h~~fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 156 HSSFYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred hhhHHHHHHHHHHHHHhHHHHHH
Done!