Query 004644
Match_columns 740
No_of_seqs 583 out of 4135
Neff 11.5
Searched_HMMs 29240
Date Tue Mar 26 18:06:22 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004644.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1943-1947//hhsearch_pdb/004644hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 309.9 34.3 467 156-686 69-578 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 296.5 36.1 492 55-670 62-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 210.9 33.9 180 490-673 203-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 205.9 35.5 293 354-687 64-368 (388)
5 3fp2_A TPR repeat-containing p 1.0 1 1 195.1 27.7 172 490-662 310-500 (537)
6 2gw1_A Mitochondrial precursor 1.0 1 1 192.6 27.4 163 520-686 303-477 (514)
7 3fp2_A TPR repeat-containing p 1.0 1 1 190.3 26.4 194 491-688 277-492 (537)
8 2gw1_A Mitochondrial precursor 1.0 1 1 188.4 26.3 174 492-666 306-491 (514)
9 4g26_A Pentatricopeptide repea 1.0 1 1 187.3 21.0 176 266-468 28-223 (501)
10 4g26_A Pentatricopeptide repea 1.0 1 1 179.7 18.6 179 297-502 28-222 (501)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=309.88 Aligned_cols=467 Identities=9% Similarity=-0.017 Sum_probs=226.8
Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCC--CCCCHHHHHHHHHHCCCCHHHHHHHHCCCC--CC
Q ss_conf 16599998208999923199999999927996899999986110--994209999999814899489999851058--88
Q 004644 156 YNEAKKLLDAMPSKNIVSWNSMLSGYTKNGEMHLASKFFEAMEE--RDVVSWNLMLDGYVELDDLDSAWKFFQKIP--EQ 231 (740)
Q Consensus 156 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~ 231 (740)
...+...+..+..++...|+.++..+.+.|++++|..+|+++.. |+..++..++.++...|++++|...++++. ++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 148 (597)
T 2xpi_A 69 FLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNR 148 (597)
T ss_dssp -------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
T ss_conf 67887754663378999999999999874583479999999996089935799999999974769999999998733545
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC-------------------CCCHHHHHHHHHHHCCCHHHHHHHHHHCCC
Q ss_conf 6307999999999249958899981108999-------------------921099999999981999999999853799
Q 004644 232 NVVSWVTMLSGYARNGRMLEARRLFDQMPIR-------------------NVVAWNAMIAAYVQRGQIEEAARLFIEMPE 292 (740)
Q Consensus 232 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 292 (740)
++.++..++.+|.+.|++++|..+|+++.+. +..+|+.++.+|.+.|++++|+..|+++.+
T Consensus 149 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 228 (597)
T 2xpi_A 149 SSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM 228 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 65089999999998866999999984248863223234334321123512589999988999983998999999999997
Q ss_pred CC---HHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 88---321999999996308887899998308988603778999999932992689999720399981169999999998
Q 004644 293 RN---PVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQ 369 (740)
Q Consensus 293 ~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 369 (740)
.+ ...+..+...+...+.. .......+.- ... ...-.......|+.++..|.+
T Consensus 229 ~~p~~~~~~~~l~~~~~~~~~~--~~~~~~~l~~-------------------~~~---~~~~~~~~~~~~~~~~~~~~~ 284 (597)
T 2xpi_A 229 VDAKCYEAFDQLVSNHLLTADE--EWDLVLKLNY-------------------STY---SKEDAAFLRSLYMLKLNKTSH 284 (597)
T ss_dssp HCTTCHHHHHHHHHTTCSCHHH--HHHHHHHSCT-------------------HHH---HGGGHHHHHHHHHTTSCTTTT
T ss_pred HCCHHHHHHHHHHHHHCCCCHH--HHHHHHHCCC-------------------CCC---CCCHHHHHHHHHHHHHHHHCC
T ss_conf 2932569999999850346156--7899986577-------------------423---443088999999999999807
Q ss_pred CCCHHHHHHHHHHCCC--CCHHHHHHHHHHHHCCCCHHHHHHHHHHH--CCCCCEECHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 2998999999982415--89889999999999059988999999961--7999900189999999708995779999999
Q 004644 370 CGRMDEAINLFRQMVN--KDIVTWNTMIAGYAQIRQMDDAVKIFEEM--GKRRNTVSWNALISGFLQNEFHLDALKIFVL 445 (740)
Q Consensus 370 ~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 445 (740)
.|++++|..+|+++.+ +++.++..++..+.+.|++++|..+|+++ ..+.+..++..++.++...|+.++|..++.+
T Consensus 285 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (597)
T 2xpi_A 285 EDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISND 364 (597)
T ss_dssp HHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 31399999999876438830999999999999846899999999999972955379999999999982777799999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCC---CCCCC
Q ss_conf 988799888998999999840121068899999999991999873388899888340499778999960069---99910
Q 004644 446 MTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQNAELLFKDAD---PVDVI 522 (740)
Q Consensus 446 m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~ 522 (740)
+.... +.+.. ++..++.+|.+.|++++|.++|+++. |.+..
T Consensus 365 ~~~~~-~~~~~-----------------------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 408 (597)
T 2xpi_A 365 LVDRH-PEKAV-----------------------------------TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGP 408 (597)
T ss_dssp HHHHC-TTSHH-----------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHC-CCCHH-----------------------------------HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 98518-35479-----------------------------------9999999999835699999999999872977789
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHH
Q ss_conf 09999999996399279999999999789999947799998962403109989999999265209768-94238889644
Q 004644 523 SWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEP-LVEHYACMIDL 601 (740)
Q Consensus 523 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~ 601 (740)
+|+.++.++...|++++|+++|+++.+.+ +.+..++..++.+|...|++++|..+|+++.+. .| +..+|..++..
T Consensus 409 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~ 484 (597)
T 2xpi_A 409 AWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL---FQYDPLLLNELGVV 484 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHH
T ss_conf 99999999997577799999999999868-134389999999999857999999999999984---88876799999999
Q ss_pred HHCCCCHHHHHHHHHHC-------CCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 20169908999999719-------99999--8889999999982199889999999967028999863587889988239
Q 004644 602 LSRAGRLDEAFEMVKGM-------KIKPN--AGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAG 672 (740)
Q Consensus 602 ~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 672 (740)
|.+.|++++|.++++.+ +..|+ ..+|..++.+|...|++++|+..++++++..|+++..|..++.+|...|
T Consensus 485 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 564 (597)
T 2xpi_A 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK 564 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTT
T ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 99818999999999999985323454535499999999999998047999999999999738997389999999999817
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 94489999999850
Q 004644 673 RWDEVEKVRVSMEG 686 (740)
Q Consensus 673 ~~~~A~~~~~~~~~ 686 (740)
++++|.+.++++.+
T Consensus 565 ~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 565 IPGLAITHLHESLA 578 (597)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
T ss_conf 89999999999972
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=296.47 Aligned_cols=492 Identities=10% Similarity=0.062 Sum_probs=293.3
Q ss_pred HHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCC--CCCCCHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 999089914799998109999920189999998439994789999984259--992019999999981799589999973
Q 004644 55 AYAKNGRVNDARKLFEQMPQRNLVSWNSMIAGYLHNDKVKEARELFDKMFR--PDLFSWALMITCYTRKGELEKARELFD 132 (740)
Q Consensus 55 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~ 132 (740)
.+...|....+...+..+..++...|..++..+.+.|++++|+.++++++. |+..++..++.++...|++++|..+++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 141 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLT 141 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 66556766788775466337899999999999987458347999999999608993579999999997476999999999
Q ss_pred HC-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC-------------------CCCHHHHHHHHHHCCCHHHHHH
Q ss_conf 48-999990169999999993499165999982089999-------------------2319999999992799689999
Q 004644 133 LL-PNKEDTACWNAMVAGYAKIGNYNEAKKLLDAMPSKN-------------------IVSWNSMLSGYTKNGEMHLASK 192 (740)
Q Consensus 133 ~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------------~~~~~~l~~~~~~~g~~~~A~~ 192 (740)
.+ ..++++.+++.++.+|.++|++++|.++|+++.+.+ ..+|+.++.+|.+.|++++|..
T Consensus 142 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 221 (597)
T 2xpi_A 142 KEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKE 221 (597)
T ss_dssp HTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 87335456508999999999886699999998424886322323433432112351258999998899998399899999
Q ss_pred HHHHCCCCCC---CHHHHHHHHHHCCCCHHHHHHH---HCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCH
Q ss_conf 9986110994---2099999998148994899998---510588863079999999992499588999811089999210
Q 004644 193 FFEAMEERDV---VSWNLMLDGYVELDDLDSAWKF---FQKIPEQNVVSWVTMLSGYARNGRMLEARRLFDQMPIRNVVA 266 (740)
Q Consensus 193 ~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 266 (740)
.|+++.+.++ ..+..++..+...+..+.+... +..+.+.+... ....
T Consensus 222 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---------------------------~~~~ 274 (597)
T 2xpi_A 222 CYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF---------------------------LRSL 274 (597)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHH---------------------------HHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHH---------------------------HHHH
T ss_conf 9999997293256999999985034615678999865774234430889---------------------------9999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99999999981999999999853799--8832199999999630888789999830898860377899999993299268
Q 004644 267 WNAMIAAYVQRGQIEEAARLFIEMPE--RNPVSWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDE 344 (740)
Q Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 344 (740)
|+.++..|.+.|++++|..+|+++.+ ++..++..++..+...|++++|..+++++...
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------- 334 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI-------------------- 334 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC--------------------
T ss_conf 999999980731399999999876438830999999999999846899999999999972--------------------
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 99997203999811699999999982998999999982415---898899999999990599889999999617999900
Q 004644 345 ANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMVN---KDIVTWNTMIAGYAQIRQMDDAVKIFEEMGKRRNTV 421 (740)
Q Consensus 345 A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 421 (740)
.+.+..++..++..+.+.|++++|..+++++++ .++.++..++..|.+.|++++|.+.|+++
T Consensus 335 --------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------- 399 (597)
T 2xpi_A 335 --------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKS------- 399 (597)
T ss_dssp --------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHH-------
T ss_pred --------CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH-------
T ss_conf --------95537999999999998277779999999998518354799999999999835699999999999-------
Q ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 18999999970899577999999998879988899899999984012106889999999999199987338889988834
Q 004644 422 SWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYA 501 (740)
Q Consensus 422 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~ 501 (740)
.... +.+...++.++..|.
T Consensus 400 -------------------------~~~~------------------------------------~~~~~~~~~l~~~~~ 418 (597)
T 2xpi_A 400 -------------------------STMD------------------------------------PQFGPAWIGFAHSFA 418 (597)
T ss_dssp -------------------------HHHC------------------------------------TTCHHHHHHHHHHHH
T ss_pred -------------------------HHHC------------------------------------CCCHHHHHHHHHHHH
T ss_conf -------------------------8729------------------------------------777899999999999
Q ss_pred CCCCHHHHHHHHCCCC---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 0499778999960069---9991009999999996399279999999999789999947799998962403109989999
Q 004644 502 KCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKL 578 (740)
Q Consensus 502 ~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 578 (740)
+.|++++|.++|+++. +.+..+|..++.+|...|++++|.+.|+++.+.. +.+..++..++..+...|++++|..+
T Consensus 419 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 497 (597)
T 2xpi_A 419 IEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINH 497 (597)
T ss_dssp HHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 75777999999999998681343899999999998579999999999999848-88767999999999981899999999
Q ss_pred HHHHHHHC---CCCCC--CCHHHHHHHHHHCCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99926520---97689--423888964420169908999999719-9999-98889999999982199889999999967
Q 004644 579 FECMTEVY---AIEPL--VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKP-NAGIWGTLLGACRMHQNIKLGRIAVEKLS 651 (740)
Q Consensus 579 ~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 651 (740)
|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++.+ ...| +..+|..++.+|...|++++|...+++++
T Consensus 498 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 577 (597)
T 2xpi_A 498 FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL 577 (597)
T ss_dssp HHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99999853234545354999999999999980479999999999997389973899999999998178999999999997
Q ss_pred CCCCCCCCCHHHHHHHHHH
Q ss_conf 0289998635878899882
Q 004644 652 ELEPQKTSCYALLSNMHAE 670 (740)
Q Consensus 652 ~~~p~~~~~~~~l~~~~~~ 670 (740)
+++|+++..+..++.+|..
T Consensus 578 ~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 578 AISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHCTTCHHHHHHHHHTTC-
T ss_pred HCCCCCHHHHHHHHHHHHC
T ss_conf 2088874899999998743
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=210.90 Aligned_cols=180 Identities=14% Similarity=0.172 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCC---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 3388899888340499778999960069---9991009999999996399279999999999789999947799998962
Q 004644 490 LFVGNSLITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566 (740)
Q Consensus 490 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 566 (740)
...+..++..+...|++++|...+.+.. |.+..++..++.++...|++++|+..|+++.+.+ +.+..++..++.++
T Consensus 203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 281 (388)
T 1w3b_A 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANAL 281 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_conf 79999999999985789999999999985296878999999999998688999999999998649-99889999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHCCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCCHHHH
Q ss_conf 4031099899999992652097689-423888964420169908999999719-9999-988899999999821998899
Q 004644 567 SHVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-KIKP-NAGIWGTLLGACRMHQNIKLG 643 (740)
Q Consensus 567 ~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 643 (740)
...|++++|+..++++.+. .|+ ...+..++..+...|++++|...++.+ ...| +...+..++..+...|++++|
T Consensus 282 ~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 282 KEKGSVAEAEDCYNTALRL---CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 9869979999999999864---9444999999999999848999999999999860987399997799999986888999
Q ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 999999670289998635878899882399
Q 004644 644 RIAVEKLSELEPQKTSCYALLSNMHAEAGR 673 (740)
Q Consensus 644 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 673 (740)
...++++++++|+++..+..++.++...|+
T Consensus 359 ~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 359 LMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 999999986199978999859999987459
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=205.89 Aligned_cols=293 Identities=16% Similarity=0.122 Sum_probs=202.5
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCC--C-CHHHHHHHHHHHHCCCCHHHHHHHHHHH-CC-CCCEECHHHHHH
Q ss_conf 99811699999999982998999999982415--8-9889999999999059988999999961-79-999001899999
Q 004644 354 THDVVCWNVMIKGYAQCGRMDEAINLFRQMVN--K-DIVTWNTMIAGYAQIRQMDDAVKIFEEM-GK-RRNTVSWNALIS 428 (740)
Q Consensus 354 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~-~~~~~~~~~l~~ 428 (740)
|.+...|..++..+.+.|++++|+..|+++++ | ++.++..++..+...|++++|...|+++ .. +.+...+..+..
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 143 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGN 143 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 78669999999999877999999999999987496539999999999998589999999999999759896899999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHH
Q ss_conf 99708995779999999988799888998999999840121068899999999991999873388899888340499778
Q 004644 429 GFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAKCGRIQN 508 (740)
Q Consensus 429 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~ 508 (740)
.+...|++++|...|.++.... +.+...+..++..+...|++++
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~------------------------------------p~~~~~~~~l~~~~~~~g~~~~ 187 (388)
T 1w3b_A 144 LLKALGRLEEAKACYLKAIETQ------------------------------------PNFAVAWSNLGCVFNAQGEIWL 187 (388)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC------------------------------------CCCHHHHHHHHHHHHHCCCHHH
T ss_conf 9998468999999999998729------------------------------------8978999999999998599999
Q ss_pred HHHHHCCCC---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 999960069---99910099999999963992799999999997899999-47799998962403109989999999265
Q 004644 509 AELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPD-PVTFIGVLSACSHVGLVDGGLKLFECMTE 584 (740)
Q Consensus 509 A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 584 (740)
|...|+++. |.+...|..++..+...|++++|+..++++... .|+ ..++..++.++...|++++|+..++++.+
T Consensus 188 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 265 (388)
T 1w3b_A 188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999998559886799999999999857899999999999852--968789999999999986889999999999986
Q ss_pred HCCCCCC-CCHHHHHHHHHHCCCCHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 2097689-423888964420169908999999719-9-999988899999999821998899999999670289998635
Q 004644 585 VYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGM-K-IKPNAGIWGTLLGACRMHQNIKLGRIAVEKLSELEPQKTSCY 661 (740)
Q Consensus 585 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 661 (740)
..|+ ...+..++..+.+.|++++|.+.++.+ . .+++...+..++..+...|++++|+..++++++..|+++..+
T Consensus 266 ---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 342 (388)
T 1w3b_A 266 ---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342 (388)
T ss_dssp ---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred ---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHH
T ss_conf ---49998899999999999869979999999999864944499999999999984899999999999986098739999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 87889988239944899999998509
Q 004644 662 ALLSNMHAEAGRWDEVEKVRVSMEGS 687 (740)
Q Consensus 662 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 687 (740)
..++.+|...|++++|...++++.+.
T Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 343 SNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 77999999868889999999999861
No 5
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=195.09 Aligned_cols=172 Identities=15% Similarity=0.101 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCC---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 3388899888340499778999960069---9991009999999996399279999999999789999947799998962
Q 004644 490 LFVGNSLITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSAC 566 (740)
Q Consensus 490 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 566 (740)
..++..++..+...|++++|...++++. |.+...|..++.++...|++++|+..++++.+.. +.+...+..+...+
T Consensus 310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 388 (537)
T 3fp2_A 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEIL 388 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_conf 79999999999866899999999999998599977999999999998477999999999998739-99859999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCC----CCHHHHHHHHHHCC----------CCHHHHHHHHHHC-CCCC-CHHHHHHH
Q ss_conf 4031099899999992652097689----42388896442016----------9908999999719-9999-98889999
Q 004644 567 SHVGLVDGGLKLFECMTEVYAIEPL----VEHYACMIDLLSRA----------GRLDEAFEMVKGM-KIKP-NAGIWGTL 630 (740)
Q Consensus 567 ~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l 630 (740)
...|++++|...++++.+..+..+. ...+...+..+.+. |++++|...++.. ...| +...+..+
T Consensus 389 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 468 (537)
T 3fp2_A 389 TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGL 468 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 88378899999999998709762446888999998899999976401002247579999999999997499978999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 99998219988999999996702899986358
Q 004644 631 LGACRMHQNIKLGRIAVEKLSELEPQKTSCYA 662 (740)
Q Consensus 631 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 662 (740)
+..+...|++++|...+++++++.|+.+....
T Consensus 469 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 469 AQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999851499999999999986899388888
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=192.59 Aligned_cols=163 Identities=15% Similarity=0.043 Sum_probs=70.8
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC-CCHHHHH
Q ss_conf 910099999999963992799999999997899999477999989624031099899999992652097689-4238889
Q 004644 520 DVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSHVGLVDGGLKLFECMTEVYAIEPL-VEHYACM 598 (740)
Q Consensus 520 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l 598 (740)
+...+..++..+...|++++|+..++++.... +.+...+..+...+...|++++|...++.+.+. .|+ ...+..+
T Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l 378 (514)
T 2gw1_A 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFF 378 (514)
T ss_dssp CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHH
T ss_conf 78999999999998077999999999998738-502899999999999868999999999999987---54677899999
Q ss_pred HHHHHCCCCHHHHHHHHHHC-C---CCCC----HHHHHHHHHHHHH---CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 64420169908999999719-9---9999----8889999999982---1998899999999670289998635878899
Q 004644 599 IDLLSRAGRLDEAFEMVKGM-K---IKPN----AGIWGTLLGACRM---HQNIKLGRIAVEKLSELEPQKTSCYALLSNM 667 (740)
Q Consensus 599 ~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 667 (740)
+..+...|++++|...++.+ . ..++ ...+..++..+.. .|+++.|...++++++..|+++..+..++.+
T Consensus 379 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 458 (514)
T 2gw1_A 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQM 458 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99998788999999999999976123321789999999999998663325888999999999987585558999999999
Q ss_pred HHHCCCCHHHHHHHHHHHH
Q ss_conf 8823994489999999850
Q 004644 668 HAEAGRWDEVEKVRVSMEG 686 (740)
Q Consensus 668 ~~~~g~~~~A~~~~~~~~~ 686 (740)
|...|++++|...++++.+
T Consensus 459 ~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 459 KLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHH
T ss_conf 9982579999999999987
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=190.34 Aligned_cols=194 Identities=15% Similarity=0.059 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCC---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
Q ss_conf 388899888340499778999960069---99910099999999963992799999999997899999477999989624
Q 004644 491 FVGNSLITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACS 567 (740)
Q Consensus 491 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 567 (740)
..+..++..+...|++++|...++++. |.+..+|..++..+...|++++|+..++++.... +.+...+..+..++.
T Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 355 (537)
T 3fp2_A 277 NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLY 355 (537)
T ss_dssp HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
T ss_conf 6999999999980379999999999754599987999999999986689999999999999859-997799999999999
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHCCCCHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHHC-
Q ss_conf 031099899999992652097689-4238889644201699089999997199--------999988899999999821-
Q 004644 568 HVGLVDGGLKLFECMTEVYAIEPL-VEHYACMIDLLSRAGRLDEAFEMVKGMK--------IKPNAGIWGTLLGACRMH- 637 (740)
Q Consensus 568 ~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~~~~~~l~~~~~~~- 637 (740)
..|++++|...++++.+. .|+ ...+..++..+...|++++|...++.+. .......+..+...+...
T Consensus 356 ~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 432 (537)
T 3fp2_A 356 KQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQS 432 (537)
T ss_dssp HTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 847799999999999873---99985999999999988378899999999998709762446888999998899999976
Q ss_pred ---------CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf ---------998899999999670289998635878899882399448999999985099
Q 004644 638 ---------QNIKLGRIAVEKLSELEPQKTSCYALLSNMHAEAGRWDEVEKVRVSMEGSG 688 (740)
Q Consensus 638 ---------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 688 (740)
|++++|+..++++++.+|+++.++..++.+|...|++++|...++++.+..
T Consensus 433 ~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 433 SQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp TC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 401002247579999999999997499978999999999998514999999999999868
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=188.38 Aligned_cols=174 Identities=15% Similarity=0.057 Sum_probs=119.3
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCC---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
Q ss_conf 88899888340499778999960069---999100999999999639927999999999978999994779999896240
Q 004644 492 VGNSLITMYAKCGRIQNAELLFKDAD---PVDVISWNSLIAGYAINGNATEAIKLFEEMVMEGVAPDPVTFIGVLSACSH 568 (740)
Q Consensus 492 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 568 (740)
.+..++..+...|++++|...++++. |.+...+..++..+...|++++|+..++++.+.. +.+...+..+...+..
T Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 384 (514)
T 2gw1_A 306 VYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTD 384 (514)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
T ss_conf 999999999980779999999999987385028999999999998689999999999999875-4677899999999987
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCC----CCHHHHHHHHHHC---CCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHCCC
Q ss_conf 31099899999992652097689----4238889644201---69908999999719-9999-98889999999982199
Q 004644 569 VGLVDGGLKLFECMTEVYAIEPL----VEHYACMIDLLSR---AGRLDEAFEMVKGM-KIKP-NAGIWGTLLGACRMHQN 639 (740)
Q Consensus 569 ~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 639 (740)
.|++++|...++.+....+..+. ...+..++..+.. .|++++|...++.+ ...| +...+..++..+...|+
T Consensus 385 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 464 (514)
T 2gw1_A 385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQED 464 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
T ss_conf 88999999999999976123321789999999999998663325888999999999987585558999999999998257
Q ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 889999999967028999863587889
Q 004644 640 IKLGRIAVEKLSELEPQKTSCYALLSN 666 (740)
Q Consensus 640 ~~~a~~~~~~~~~~~p~~~~~~~~l~~ 666 (740)
+++|...+++++++.|+++..+..+..
T Consensus 465 ~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 465 IDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp HHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 999999999998766146889999999
No 9
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=187.33 Aligned_cols=176 Identities=12% Similarity=0.123 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCC----CCCHHHHHHHHHHHHHHCC---------HHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 09999999998199999999985379----9883219999999963088---------8789999830898860377899
Q 004644 266 AWNAMIAAYVQRGQIEEAARLFIEMP----ERNPVSWTTMIDGYVRIAK---------LDEARRLLDQMPYKNIAAQTAM 332 (740)
Q Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~l 332 (740)
.++.++.+|++.|++++|+++|++|. +||..+|+.++.+|...+. ++.|..+|++|...++
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~------ 101 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKV------ 101 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCC------
T ss_conf 99999999985989999999999999818998783999999999857830433321249999999999998089------
Q ss_pred HHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCC----CCCHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 9999932992689999720399981169999999998299899999998241----589889999999999059988999
Q 004644 333 ISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGRMDEAINLFRQMV----NKDIVTWNTMIAGYAQIRQMDDAV 408 (740)
Q Consensus 333 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~ 408 (740)
.||..+|+.++.+|++.|++++|..+|++|. .||..+|+.++.+|++.|++++|.
T Consensus 102 ---------------------~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~ 160 (501)
T 4g26_A 102 ---------------------VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAY 160 (501)
T ss_dssp ---------------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHH
T ss_conf ---------------------99899999999999846977889999999997289886111048999999888999999
Q ss_pred HHHHHH---CCCCCEECHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 999961---799990018999999970899577999999998879988899899999984012
Q 004644 409 KIFEEM---GKRRNTVSWNALISGFLQNEFHLDALKIFVLMTQEGKKADHSTLACALSACAHL 468 (740)
Q Consensus 409 ~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~~l~~~~~~ 468 (740)
++|++| +..|+..+|+.++.+|++.|+.++|..++++|...+..|+..|+..++..+...
T Consensus 161 ~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 161 EVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf 999999862999999999999999853898999999999999948996999999999998307
No 10
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=179.75 Aligned_cols=179 Identities=13% Similarity=0.097 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC----
Q ss_conf 1999999996308887899998308988603778999999932992689999720399981169999999998299----
Q 004644 297 SWTTMIDGYVRIAKLDEARRLLDQMPYKNIAAQTAMISGYVQNKRMDEANQIFDKIGTHDVVCWNVMIKGYAQCGR---- 372 (740)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 372 (740)
.+..+++.|++.|++++|..+|++|...|+ ++|..+|+.++.+|.+.+.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv---------------------------~pd~~tyn~Li~~c~~~~~~~~~ 80 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGV---------------------------QLSQYHYNVLLYVCSLAEAATES 80 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTC---------------------------CCCHHHHHHHHHHHTTCCCCSSS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCC---------------------------CCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 999999999859899999999999998189---------------------------98783999999999857830433
Q ss_pred -----HHHHHHHHHHCC----CCCHHHHHHHHHHHHCCCCHHHHHHHHHHH---CCCCCEECHHHHHHHHHCCCCHHHHH
Q ss_conf -----899999998241----589889999999999059988999999961---79999001899999997089957799
Q 004644 373 -----MDEAINLFRQMV----NKDIVTWNTMIAGYAQIRQMDDAVKIFEEM---GKRRNTVSWNALISGFLQNEFHLDAL 440 (740)
Q Consensus 373 -----~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~ 440 (740)
.+.|.++|++|. .||..+|+.++.+|.+.|++++|.++|++| +..|+..+|+.++.+|++.|+.++|.
T Consensus 81 ~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~ 160 (501)
T 4g26_A 81 SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAY 160 (501)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHH
T ss_conf 32124999999999999808999899999999999846977889999999997289886111048999999888999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
Q ss_conf 99999988799888998999999840121068899999999991999873388899888340
Q 004644 441 KIFVLMTQEGKKADHSTLACALSACAHLAALQLGRQIHHLAIKSGYVNDLFVGNSLITMYAK 502 (740)
Q Consensus 441 ~~~~~m~~~~~~p~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 502 (740)
.+|++|...|+.|+..+|..++.+|++.|+.+.|..+++.|...|..|+..+++.++..+..
T Consensus 161 ~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 161 EVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 99999986299999999999999985389899999999999994899699999999999830
Done!