Query 004645
Match_columns 740
No_of_seqs 370 out of 2090
Neff 6.1
Searched_HMMs 29240
Date Tue Mar 26 18:23:26 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004645.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1943-1947//hhsearch_pdb/004645hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fpq_A Serine/threonine-protei 1.0 1 1 463.8 32.5 272 12-285 15-289 (290)
2 4fie_A Serine/threonine-protei 1.0 1 1 437.6 26.5 258 18-287 147-409 (423)
3 4fih_A Serine/threonine-protei 1.0 1 1 432.2 27.6 257 18-286 70-331 (346)
4 4b9d_A Serine/threonine-protei 1.0 1 1 431.7 25.3 256 20-285 22-283 (350)
5 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 428.4 23.3 256 23-288 33-300 (311)
6 3hyh_A Carbon catabolite-derep 1.0 1 1 420.5 24.3 260 15-285 6-269 (275)
7 3ubd_A Ribosomal protein S6 ki 1.0 1 1 418.9 18.7 260 17-288 20-291 (304)
8 4g3f_A NF-kappa-beta-inducing 1.0 1 1 417.4 23.7 249 22-284 57-328 (336)
9 3v5w_A G-protein coupled recep 1.0 1 1 416.3 24.4 260 22-289 189-460 (689)
10 3uto_A Twitchin; kinase, muscl 1.0 1 1 409.9 26.8 257 22-288 157-420 (573)
No 1
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=463.85 Aligned_cols=272 Identities=48% Similarity=0.896 Sum_probs=248.7
Q ss_pred CCCCEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 98713438998635875775202856999999857990999999750555799889999999999998389998214656
Q 004645 12 SSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEELERLYCEIHLLKTLKHRNIMKFYT 91 (740)
Q Consensus 12 ~~~~~e~dp~grY~rl~e~LG~GsfGtVyka~d~~tg~~VAiK~iki~~~~~s~~~~~~l~~Ei~iLk~L~HpNIVkl~~ 91 (740)
+...+...+.|||+++.+.||+|+||+||+|.++.++..||+|++.... ......+++.+|+.+|++|+|||||++|+
T Consensus 15 ~~~~~~~~~~gr~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~--~~~~~~~~~~~E~~il~~l~HpnIV~~~~ 92 (290)
T 3fpq_A 15 ETKAVGMSNDGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRK--LTKSERQRFKEEAEMLKGLQHPNIVRFYD 92 (290)
T ss_dssp --CEEEECTTSSEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGG--SCHHHHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred HHHHCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECHHH--CCHHHHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 6654176789836895069700738599999988999099999983254--79899999999999998679989991988
Q ss_pred EEEEC--CCCEEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEECCCCCEE
Q ss_conf 85625--8884999993368999899999648889999999999999999998709999030368878658708999289
Q 004645 92 SWVDT--ANRNINFVTEMFTSGTLRQYRLKHRRVNIRAVKHWCRQILSGLLYLHSRDPPVIHRDLKCDNIFVNGNQGEVK 169 (740)
Q Consensus 92 ~fvd~--~~~~i~lV~Ey~~gGSL~~~l~~~k~l~~~~i~~i~~QIL~gL~yLHs~gp~IIHrDLKp~NILId~n~G~VK 169 (740)
+|.+. ....+|+||||++||+|.+++.+.+.+++..++.|++||+.||.|||+++++||||||||+|||+++..|.+|
T Consensus 93 ~~~~~~~~~~~~~lvmEy~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~~~~g~vK 172 (290)
T 3fpq_A 93 SWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVK 172 (290)
T ss_dssp EEEEEETTEEEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEESSTTSCEE
T ss_pred EEEECCCCCCEEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHEEEECCCCCEE
T ss_conf 99643678868999994879789999998669999999999999999999999977998871645742665888999889
Q ss_pred EECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 91144044330476643358888788200001268421101013579998853799999999899999998199996344
Q 004645 170 IGDLGLAAILRKSHAARCVGTPEFMAPEVYEEEYNELVDIYSFGMCILEMVTFDYPYSECTHPAQIYKKVISGKKPEALF 249 (740)
Q Consensus 170 I~DFGlA~~l~~~~~~~~~GTp~YmAPEvl~~~ys~~sDIWSLGiiLyELlTG~~Pf~~~~~~~~i~kki~~g~~p~~~~ 249 (740)
|+|||+|+........+.+|||.|||||++.+.|+.++|||||||++|+|+||+.||.+..+..++++.+..+..|..+.
T Consensus 173 l~DFGla~~~~~~~~~~~~GTp~YmAPE~~~~~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~~~i~~~~~~~~~~ 252 (290)
T 3fpq_A 173 IGDLGLATLKRASFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFD 252 (290)
T ss_dssp ECCTTGGGGCCTTSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGG
T ss_pred EEECCCCEECCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 97276887679876677624802018978079999278888799999999978899999981999999997389987777
Q ss_pred CCCCHHHHHHHHHHHH-CCCCCCCHHHHHCCCCCCCC
Q ss_conf 6899589999999961-81699999888449556778
Q 004645 250 KVEDPEVRQFIEKCLA-TVSSRLSARELLTDPFLQID 285 (740)
Q Consensus 250 ~~~spelr~lI~kCL~-dP~kRpSa~ELL~hpfl~~~ 285 (740)
...++++++||.+||. +|.+|||+.++|+||||+..
T Consensus 253 ~~~~~~~~~li~~~L~~dP~~R~s~~e~l~Hp~~~~~ 289 (290)
T 3fpq_A 253 KVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQEE 289 (290)
T ss_dssp GCCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGC--
T ss_pred CCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCCCCCCC
T ss_conf 6578999999999763896579199999569040589
No 2
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=437.55 Aligned_cols=258 Identities=30% Similarity=0.498 Sum_probs=224.5
Q ss_pred ECCCCCEEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
Q ss_conf 38998635875775202856999999857990999999750555799889999999999998389998214656856258
Q 004645 18 VDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEELERLYCEIHLLKTLKHRNIMKFYTSWVDTA 97 (740)
Q Consensus 18 ~dp~grY~rl~e~LG~GsfGtVyka~d~~tg~~VAiK~iki~~~~~s~~~~~~l~~Ei~iLk~L~HpNIVkl~~~fvd~~ 97 (740)
.||...| ++.+.||+|+||+||+|+++.+|..||+|++.+... ...+.+.+|+.+|+.|+|||||++|++|.+
T Consensus 147 ~dp~~~y-~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~----~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~-- 219 (423)
T 4fie_A 147 GDPRSYL-DNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQ----QRRELLFNEVVIMRDYQHENVVEMYNSYLV-- 219 (423)
T ss_dssp SCGGGTE-EEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTC----SSGGGHHHHHHHHHHCCCTTBCCEEEEEEE--
T ss_pred CCHHHHC-EEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCH----HHHHHHHHHHHHHHHCCCCCCCCEEEEEEE--
T ss_conf 9826843-861696248184899999999998999999862554----689999999999985799898716899998--
Q ss_pred CCEEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEECCCCCEEEECCCHHH
Q ss_conf 88499999336899989999964888999999999999999999870999903036887865870899928991144044
Q 004645 98 NRNINFVTEMFTSGTLRQYRLKHRRVNIRAVKHWCRQILSGLLYLHSRDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAA 177 (740)
Q Consensus 98 ~~~i~lV~Ey~~gGSL~~~l~~~k~l~~~~i~~i~~QIL~gL~yLHs~gp~IIHrDLKp~NILId~n~G~VKI~DFGlA~ 177 (740)
...+|+|||||.||+|.+++. .+++++..++.|++||+.||.|||+++ ||||||||+||||+ .+|.+||+|||+|.
T Consensus 220 ~~~~~iVmEy~~gG~L~~~i~-~~~l~e~~~~~~~~qil~aL~ylH~~~--IiHRDiKp~NILl~-~~g~vKl~DFGla~ 295 (423)
T 4fie_A 220 GDELWVVMEFLEGGALTDIVT-HTRMNEEQIAAVCLAVLQALSVLHAQG--VIHRDIKSDSILLT-HDGRVKLSDFGFCA 295 (423)
T ss_dssp TTEEEEEEECCTTEEHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSTTTEEEC-TTCCEEECCCTTCE
T ss_pred CCEEEEEEECCCCCCHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHCC--EECCCCCHHHEEEC-CCCCEEEECCCCCE
T ss_conf 999999996989982898876-169899999999999999999999889--04465787778985-89998980372654
Q ss_pred HHCCC--CCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCC-CCCCCCCC
Q ss_conf 33047--6643358888788200001-26842110101357999885379999999989999999819999-63446899
Q 004645 178 ILRKS--HAARCVGTPEFMAPEVYEE-EYNELVDIYSFGMCILEMVTFDYPYSECTHPAQIYKKVISGKKP-EALFKVED 253 (740)
Q Consensus 178 ~l~~~--~~~~~~GTp~YmAPEvl~~-~ys~~sDIWSLGiiLyELlTG~~Pf~~~~~~~~i~kki~~g~~p-~~~~~~~s 253 (740)
.+... .....+||+.|||||++.+ .|+.++|||||||++|+|++|+.||.+ .+...++..+..+..+ ...+...+
T Consensus 296 ~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~-~~~~~~~~~i~~~~~~~~~~~~~~s 374 (423)
T 4fie_A 296 QVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFN-EPPLKAMKMIRDNLPPRLKNLHKVS 374 (423)
T ss_dssp ECCSSCCCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTT-SCHHHHHHHHHHSCCCCCSCTTSSC
T ss_pred ECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 777887643466647472799997799999689999999999999978799898-6999999999727998876501299
Q ss_pred HHHHHHHHHHHH-CCCCCCCHHHHHCCCCCCCCCC
Q ss_conf 589999999961-8169999988844955677886
Q 004645 254 PEVRQFIEKCLA-TVSSRLSARELLTDPFLQIDDY 287 (740)
Q Consensus 254 pelr~lI~kCL~-dP~kRpSa~ELL~hpfl~~~~~ 287 (740)
+++++||.+||. +|.+|+|+.|+|+||||+....
T Consensus 375 ~~~~dli~~~L~~dP~~R~ta~ell~Hp~~~~~~~ 409 (423)
T 4fie_A 375 PSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAGP 409 (423)
T ss_dssp HHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCCC
T ss_pred HHHHHHHHHHCCCCHHHCCCHHHHHCCHHHCCCCC
T ss_conf 99999999986789568909999960987568999
No 3
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=432.21 Aligned_cols=257 Identities=30% Similarity=0.493 Sum_probs=224.0
Q ss_pred ECCCCCEEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
Q ss_conf 38998635875775202856999999857990999999750555799889999999999998389998214656856258
Q 004645 18 VDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEELERLYCEIHLLKTLKHRNIMKFYTSWVDTA 97 (740)
Q Consensus 18 ~dp~grY~rl~e~LG~GsfGtVyka~d~~tg~~VAiK~iki~~~~~s~~~~~~l~~Ei~iLk~L~HpNIVkl~~~fvd~~ 97 (740)
.||...| ++.+.||+|+||+||+|+++.+|..||+|++++.... ..+.+.+|+.+|+.|+|||||++|++|.+
T Consensus 70 ~dp~~~y-~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~----~~~~~~~Ei~il~~l~HpnIV~l~~~~~~-- 142 (346)
T 4fih_A 70 GDPRSYL-DNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQ----RRELLFNEVVIMRDYQHENVVEMYNSYLV-- 142 (346)
T ss_dssp SCGGGTE-EEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCS----SGGGGHHHHHHHHHCCCTTBCCEEEEEEE--
T ss_pred CCHHHHC-EEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHH----HHHHHHHHHHHHHHCCCCCCCCEEEEEEE--
T ss_conf 9815753-8707960272829999999899989999998527656----89999999999986799899919999998--
Q ss_pred CCEEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEECCCCCEEEECCCHHH
Q ss_conf 88499999336899989999964888999999999999999999870999903036887865870899928991144044
Q 004645 98 NRNINFVTEMFTSGTLRQYRLKHRRVNIRAVKHWCRQILSGLLYLHSRDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAA 177 (740)
Q Consensus 98 ~~~i~lV~Ey~~gGSL~~~l~~~k~l~~~~i~~i~~QIL~gL~yLHs~gp~IIHrDLKp~NILId~n~G~VKI~DFGlA~ 177 (740)
...+|+||||+.||+|.+++.+ +++++..++.|++||+.||.|||+++ ||||||||+||||+ .+|.+||+|||+|.
T Consensus 143 ~~~~~ivmEy~~gg~L~~~l~~-~~l~e~~~~~~~~qi~~aL~ylH~~~--IiHRDlKp~NILl~-~~g~vKl~DFGla~ 218 (346)
T 4fih_A 143 GDELWVVMEFLEGGALTDIVTH-TRMNEEQIAAVCLAVLQALSVLHAQG--VIHRDIKSDSILLT-HDGRVKLSDFGFCA 218 (346)
T ss_dssp TTEEEEEECCCTTEEHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHTT--EECCCCSGGGEEEC-TTCCEEECCCTTCE
T ss_pred CCEEEEEEECCCCCCHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCHHHEEEC-CCCCEEEECCCCCE
T ss_conf 9999999969899808999871-89899999999999999999999888--35562788997887-99988990275753
Q ss_pred HHCCC--CCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCC-CCCCCCCC
Q ss_conf 33047--6643358888788200001-26842110101357999885379999999989999999819999-63446899
Q 004645 178 ILRKS--HAARCVGTPEFMAPEVYEE-EYNELVDIYSFGMCILEMVTFDYPYSECTHPAQIYKKVISGKKP-EALFKVED 253 (740)
Q Consensus 178 ~l~~~--~~~~~~GTp~YmAPEvl~~-~ys~~sDIWSLGiiLyELlTG~~Pf~~~~~~~~i~kki~~g~~p-~~~~~~~s 253 (740)
.+... ...+.+||+.|||||++.+ .|+.++|||||||++|+|++|+.||.+ .+..+++..+..+..+ ...+...+
T Consensus 219 ~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~-~~~~~~~~~i~~~~~~~~~~~~~~s 297 (346)
T 4fih_A 219 QVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFN-EPPLKAMKMIRDNLPPRLKNLHKVS 297 (346)
T ss_dssp ECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTT-SCHHHHHHHHHHSSCCCCSCGGGSC
T ss_pred ECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 667887753465627582799997799999689999999999999978799898-5999999999717999887502299
Q ss_pred HHHHHHHHHHHH-CCCCCCCHHHHHCCCCCCCCC
Q ss_conf 589999999961-816999998884495567788
Q 004645 254 PEVRQFIEKCLA-TVSSRLSARELLTDPFLQIDD 286 (740)
Q Consensus 254 pelr~lI~kCL~-dP~kRpSa~ELL~hpfl~~~~ 286 (740)
+++++||.+||. +|.+|||+.|+|+||||+...
T Consensus 298 ~~~~dli~~~L~~dP~~R~ta~e~l~Hp~~~~~~ 331 (346)
T 4fih_A 298 PSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAG 331 (346)
T ss_dssp HHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCC
T ss_pred HHHHHHHHHHCCCCHHHCCCHHHHHCCHHHCCCC
T ss_conf 9999999998679956890999996098656899
No 4
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=431.74 Aligned_cols=256 Identities=25% Similarity=0.452 Sum_probs=226.8
Q ss_pred CCCCEEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCC
Q ss_conf 99863587577520285699999985799099999975055579988999999999999838999821465685625888
Q 004645 20 PTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEELERLYCEIHLLKTLKHRNIMKFYTSWVDTANR 99 (740)
Q Consensus 20 p~grY~rl~e~LG~GsfGtVyka~d~~tg~~VAiK~iki~~~~~s~~~~~~l~~Ei~iLk~L~HpNIVkl~~~fvd~~~~ 99 (740)
.-.+| ++.+.||+|+||+||+|+++.+|..||+|+++.... .....+++.+|+.+|++|+|||||+++++|.+ ..
T Consensus 22 sme~Y-~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~--~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~--~~ 96 (350)
T 4b9d_A 22 SMEKY-VRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRM--SSKEREESRREVAVLANMKHPNIVQYRESFEE--NG 96 (350)
T ss_dssp CCCCE-EEEEEC------CEEEEEETTTCCEEEEEEEECTTS--CHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE--TT
T ss_pred CCCCE-EEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHC--CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE--CC
T ss_conf 51255-884797027793999999889998999999865878--97999999999999987799898919999998--99
Q ss_pred EEEEEEECCCCCCHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEECCCCCEEEECCCHHH
Q ss_conf 499999336899989999964--888999999999999999999870999903036887865870899928991144044
Q 004645 100 NINFVTEMFTSGTLRQYRLKH--RRVNIRAVKHWCRQILSGLLYLHSRDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAA 177 (740)
Q Consensus 100 ~i~lV~Ey~~gGSL~~~l~~~--k~l~~~~i~~i~~QIL~gL~yLHs~gp~IIHrDLKp~NILId~n~G~VKI~DFGlA~ 177 (740)
.+|+|||||.||+|.+++... ..+++..++.|+.||+.||.|||+++ ||||||||+||||+ .+|.+||+|||+|+
T Consensus 97 ~~yiVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~--IiHRDlKp~NILl~-~~g~vKl~DFGla~ 173 (350)
T 4b9d_A 97 SLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRK--ILHRDIKSQNIFLT-KDGTVQLGDFGIAR 173 (350)
T ss_dssp EEEEEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTT--CEETTCCGGGEEEC-TTCCEEECSTTEES
T ss_pred EEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--EEECCCCHHHEEEC-CCCCEEECCCCCCE
T ss_conf 9999994889983999999738999978999999999999999999899--15135978997987-89998976465214
Q ss_pred HHCCCC--CCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 330476--643358888788200001-26842110101357999885379999999989999999819999634468995
Q 004645 178 ILRKSH--AARCVGTPEFMAPEVYEE-EYNELVDIYSFGMCILEMVTFDYPYSECTHPAQIYKKVISGKKPEALFKVEDP 254 (740)
Q Consensus 178 ~l~~~~--~~~~~GTp~YmAPEvl~~-~ys~~sDIWSLGiiLyELlTG~~Pf~~~~~~~~i~kki~~g~~p~~~~~~~sp 254 (740)
.+.... ....+||+.|||||++.+ .|+.++|||||||++|+|+||+.||.+ .+..+++.++..+..|. .....++
T Consensus 174 ~~~~~~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~-~~~~~~~~~i~~~~~~~-~~~~~s~ 251 (350)
T 4b9d_A 174 VLNSTVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEA-GSMKNLVLKIISGSFPP-VSLHYSY 251 (350)
T ss_dssp CCCHHHHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCC-SSHHHHHHHHHHTCCCC-CCTTSCH
T ss_pred EECCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHCCCCCC-CCCCCCH
T ss_conf 406885410145788360399998799989599999999999999978799899-69999999998089999-9755799
Q ss_pred HHHHHHHHHHH-CCCCCCCHHHHHCCCCCCCC
Q ss_conf 89999999961-81699999888449556778
Q 004645 255 EVRQFIEKCLA-TVSSRLSARELLTDPFLQID 285 (740)
Q Consensus 255 elr~lI~kCL~-dP~kRpSa~ELL~hpfl~~~ 285 (740)
++++||.+||. +|.+|||+.++|+||||+..
T Consensus 252 ~~~~li~~~L~~dP~~R~s~~e~l~hp~~~~~ 283 (350)
T 4b9d_A 252 DLRSLVSQLFKRNPRDRPSVNSILEKGFIAKR 283 (350)
T ss_dssp HHHHHHHHHTCSSGGGSCCHHHHHTSHHHHTT
T ss_pred HHHHHHHHHCCCCHHHCCCHHHHHCCHHHHCC
T ss_conf 99999999855896679089999639976167
No 5
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=428.43 Aligned_cols=256 Identities=26% Similarity=0.436 Sum_probs=226.4
Q ss_pred CEEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEE
Q ss_conf 63587577520285699999985799099999975055579988999999999999838999821465685625888499
Q 004645 23 RYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEELERLYCEIHLLKTLKHRNIMKFYTSWVDTANRNIN 102 (740)
Q Consensus 23 rY~rl~e~LG~GsfGtVyka~d~~tg~~VAiK~iki~~~~~s~~~~~~l~~Ei~iLk~L~HpNIVkl~~~fvd~~~~~i~ 102 (740)
.| ++.+.||+|+||+||+|+++.+|..||+|++...... .....+.+.+|+.+|++|+|||||+++++|.+ ...+|
T Consensus 33 dy-~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~-~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~--~~~~y 108 (311)
T 4aw0_A 33 DF-KFGKILGEGSFSTVVLARELATSREYAIKILEKRHII-KENKVPYVTRERDVMSRLDHPFFVKLYFTFQD--DEKLY 108 (311)
T ss_dssp GE-EEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHH-HTTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC--SSEEE
T ss_pred CC-EEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCC-CHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE--CCEEE
T ss_conf 36-8988983164849999999999989999998888877-97899999999999986799898919999973--89899
Q ss_pred EEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEECCCCCEEEECCCHHHHHCCC
Q ss_conf 99933689998999996488899999999999999999987099990303688786587089992899114404433047
Q 004645 103 FVTEMFTSGTLRQYRLKHRRVNIRAVKHWCRQILSGLLYLHSRDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKS 182 (740)
Q Consensus 103 lV~Ey~~gGSL~~~l~~~k~l~~~~i~~i~~QIL~gL~yLHs~gp~IIHrDLKp~NILId~n~G~VKI~DFGlA~~l~~~ 182 (740)
+||||+.||+|.+++.+.+.+++..++.|+.||+.||.|||+++ |+||||||+|||++ .+|.+||+|||+|..+...
T Consensus 109 ivmEy~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH~~~--IiHRDlKPeNILl~-~~g~vKl~DFGla~~~~~~ 185 (311)
T 4aw0_A 109 FGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG--IIHRDLKPENILLN-EDMHIQITDFGTAKVLSPE 185 (311)
T ss_dssp EEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTT--EECSCCSGGGEEEC-TTSCEEECCCTTCEECCTT
T ss_pred EEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCHHHEEEC-CCCCEEEEECCCCEECCCC
T ss_conf 99964899899999987499999999999999999999999887--82687878996985-8988899876875025778
Q ss_pred ----CCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf ----6643358888788200001-26842110101357999885379999999989999999819999634468995899
Q 004645 183 ----HAARCVGTPEFMAPEVYEE-EYNELVDIYSFGMCILEMVTFDYPYSECTHPAQIYKKVISGKKPEALFKVEDPEVR 257 (740)
Q Consensus 183 ----~~~~~~GTp~YmAPEvl~~-~ys~~sDIWSLGiiLyELlTG~~Pf~~~~~~~~i~kki~~g~~p~~~~~~~spelr 257 (740)
...+.+||+.|||||++.+ .|+.++|||||||++|+|+||..||.+ .+..+++.++..+... ++...+++++
T Consensus 186 ~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~-~~~~~~~~~i~~~~~~--~p~~~s~~~~ 262 (311)
T 4aw0_A 186 SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA-GNEGLIFAKIIKLEYD--FPEKFFPKAR 262 (311)
T ss_dssp TTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCC-SSHHHHHHHHHHTCCC--CCTTCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHCCCCC--CCCCCCHHHH
T ss_conf 776543675568030799897689999689899899999999749899899-7999999999719999--9965699999
Q ss_pred HHHHHHHH-CCCCCCCHHH------HHCCCCCCCCCCC
Q ss_conf 99999961-8169999988------8449556778863
Q 004645 258 QFIEKCLA-TVSSRLSARE------LLTDPFLQIDDYD 288 (740)
Q Consensus 258 ~lI~kCL~-dP~kRpSa~E------LL~hpfl~~~~~~ 288 (740)
+||.+||. +|.+|+|+.| +++||||+..++.
T Consensus 263 dli~~lL~~dp~~R~t~~e~~~~~~i~~Hp~F~~idw~ 300 (311)
T 4aw0_A 263 DLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWE 300 (311)
T ss_dssp HHHHHHSCSSGGGSTTSGGGTCHHHHHTSGGGTTCCCT
T ss_pred HHHHHHCCCCHHHCCCHHHHCCCHHHHCCCCCCCCCHH
T ss_conf 99999762897578096797587798779875898989
No 6
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=1.00 E-value=1 Score=420.53 Aligned_cols=260 Identities=26% Similarity=0.474 Sum_probs=227.8
Q ss_pred CEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 13438998635875775202856999999857990999999750555799889999999999998389998214656856
Q 004645 15 FVEVDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEELERLYCEIHLLKTLKHRNIMKFYTSWV 94 (740)
Q Consensus 15 ~~e~dp~grY~rl~e~LG~GsfGtVyka~d~~tg~~VAiK~iki~~~~~s~~~~~~l~~Ei~iLk~L~HpNIVkl~~~fv 94 (740)
..+....|+| ++.+.||+|+||+||+|+++.+|..||+|+++.... .......++.+|+.+|++|+|||||+++++|.
T Consensus 6 l~~G~~ig~Y-~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~-~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~ 83 (275)
T 3hyh_A 6 LADGAHIGNY-QIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVL-AKSDMQGRIEREISYLRLLRHPHIIKLYDVIK 83 (275)
T ss_dssp --------CC-EEEEEEEC---CCEEEEECTTTCCEEEEEEEECC-------CHHHHHHHHHHHHHCCCTTBCCEEEEEE
T ss_pred CCCCCEEECE-EEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHC-CCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf 8999893386-899998217681999999999998999999837886-78789999999999998779989992999999
Q ss_pred ECCCCEEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEECCCCCEEEECCC
Q ss_conf 25888499999336899989999964888999999999999999999870999903036887865870899928991144
Q 004645 95 DTANRNINFVTEMFTSGTLRQYRLKHRRVNIRAVKHWCRQILSGLLYLHSRDPPVIHRDLKCDNIFVNGNQGEVKIGDLG 174 (740)
Q Consensus 95 d~~~~~i~lV~Ey~~gGSL~~~l~~~k~l~~~~i~~i~~QIL~gL~yLHs~gp~IIHrDLKp~NILId~n~G~VKI~DFG 174 (740)
+ ...+|+||||+ +|+|.+++.+.+++++..++.|++||+.||.|||+++ |+||||||+|||++ .+|.+||+|||
T Consensus 84 ~--~~~~~ivmEy~-~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~--IiHRDiKP~NILl~-~~~~vkl~DFG 157 (275)
T 3hyh_A 84 S--KDEIIMVIEYA-GNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRHK--IVHRDLKPENLLLD-EHLNVKIADFG 157 (275)
T ss_dssp C--SSEEEEEEECC-CEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCTTTEEEC-TTCCEEECCSS
T ss_pred E--CCEEEEEEECC-CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCHHHEEEC-CCCCEEEEECC
T ss_conf 8--99899999278-9978999987499999999999999999999999889--30666875876887-99989994547
Q ss_pred HHHHHCCCC-CCCCCCCCCCCCCCCCCCC-C-CCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 044330476-6433588887882000012-6-842110101357999885379999999989999999819999634468
Q 004645 175 LAAILRKSH-AARCVGTPEFMAPEVYEEE-Y-NELVDIYSFGMCILEMVTFDYPYSECTHPAQIYKKVISGKKPEALFKV 251 (740)
Q Consensus 175 lA~~l~~~~-~~~~~GTp~YmAPEvl~~~-y-s~~sDIWSLGiiLyELlTG~~Pf~~~~~~~~i~kki~~g~~p~~~~~~ 251 (740)
+|....... ..+.+||+.|||||++.+. | +.++|||||||++|+|+||+.||.+ .+...+++.+..+..+ ++..
T Consensus 158 la~~~~~~~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~-~~~~~~~~~i~~~~~~--~p~~ 234 (275)
T 3hyh_A 158 LSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDD-ESIPVLFKNISNGVYT--LPKF 234 (275)
T ss_dssp CC---------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCC-SSHHHHHHHHHHTCCC--CCTT
T ss_pred CCEECCCCCCCCCEEECCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHCCCCC--CCCC
T ss_conf 772667887467702893527745506898889836568789999999988799899-8999999999749999--9877
Q ss_pred CCHHHHHHHHHHHH-CCCCCCCHHHHHCCCCCCCC
Q ss_conf 99589999999961-81699999888449556778
Q 004645 252 EDPEVRQFIEKCLA-TVSSRLSARELLTDPFLQID 285 (740)
Q Consensus 252 ~spelr~lI~kCL~-dP~kRpSa~ELL~hpfl~~~ 285 (740)
.++++++||.+||. +|.+|||+.++|+||||+.+
T Consensus 235 ~s~~~~~li~~~L~~dP~~R~s~~eil~hpw~k~~ 269 (275)
T 3hyh_A 235 LSPGAAGLIKRMLIVNPLNRISIHEIMQDDWFKVD 269 (275)
T ss_dssp SCHHHHHHHHHHSCSSGGGSCCHHHHHHCHHHHTT
T ss_pred CCHHHHHHHHHHCCCCHHHCCCHHHHHCCCCCCCC
T ss_conf 99999999999865896689199999719200658
No 7
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=1.00 E-value=1 Score=418.86 Aligned_cols=260 Identities=23% Similarity=0.354 Sum_probs=224.3
Q ss_pred EECCCCCEEEEEEEECCCCCEEEEEEEEC---CCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 43899863587577520285699999985---799099999975055579988999999999999838999821465685
Q 004645 17 EVDPTGRYGRYNEILGKGASKTVYRAFDE---YEGIEVAWNQVKLYDFLQSPEELERLYCEIHLLKTLKHRNIMKFYTSW 93 (740)
Q Consensus 17 e~dp~grY~rl~e~LG~GsfGtVyka~d~---~tg~~VAiK~iki~~~~~s~~~~~~l~~Ei~iLk~L~HpNIVkl~~~f 93 (740)
..+| .+| ++.+.||+|+||+||+|++. .++..||+|+++..... .....++.+|+.+|++|+|||||+++++|
T Consensus 20 ~~~p-~~Y-~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~--~~~~~~~~~E~~il~~l~HpnIv~l~~~~ 95 (304)
T 3ubd_A 20 KADP-SQF-ELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLK--VRDRVRTKMERDILVEVNHPFIVKLHYAF 95 (304)
T ss_dssp CCCG-GGE-EEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEE--EEECC------CCCCCCCCTTEECEEEEE
T ss_pred CCCC-CCC-EEEEEEECCCCEEEEEEEECCCCCCCEEEEEEEEEHHHCC--HHHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 3895-565-8988972188839999998558878979999998157768--47899999999999877997999099999
Q ss_pred EECCCCEEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEECCCCCEEEECC
Q ss_conf 62588849999933689998999996488899999999999999999987099990303688786587089992899114
Q 004645 94 VDTANRNINFVTEMFTSGTLRQYRLKHRRVNIRAVKHWCRQILSGLLYLHSRDPPVIHRDLKCDNIFVNGNQGEVKIGDL 173 (740)
Q Consensus 94 vd~~~~~i~lV~Ey~~gGSL~~~l~~~k~l~~~~i~~i~~QIL~gL~yLHs~gp~IIHrDLKp~NILId~n~G~VKI~DF 173 (740)
.+ ...+|+||||++||+|.+++.+.+.+++..++.|+.||+.||.|||+++ |+||||||+|||++ .+|.+||+||
T Consensus 96 ~~--~~~~~ivmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~--IiHRDlKp~NILl~-~~g~vKl~DF 170 (304)
T 3ubd_A 96 QT--EGKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLG--IIYRDLKPENILLD-EEGHIKLTDF 170 (304)
T ss_dssp EE--TTEEEEEECCCTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTT--CCCSSCCGGGEEEC-TTSCEEEESS
T ss_pred EE--CCEEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCHHHEEEC-CCCCEEECCC
T ss_conf 98--9999999975799888999975599999999999999999999999779--95888878995786-8998876236
Q ss_pred CHHHHHCCC--CCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 404433047--6643358888788200001-2684211010135799988537999999998999999981999963446
Q 004645 174 GLAAILRKS--HAARCVGTPEFMAPEVYEE-EYNELVDIYSFGMCILEMVTFDYPYSECTHPAQIYKKVISGKKPEALFK 250 (740)
Q Consensus 174 GlA~~l~~~--~~~~~~GTp~YmAPEvl~~-~ys~~sDIWSLGiiLyELlTG~~Pf~~~~~~~~i~kki~~g~~p~~~~~ 250 (740)
|+|+..... ...+.+||+.|||||++.+ .|+.++|||||||++|+|+||+.||.+ .+..+++..+..+..+ ++.
T Consensus 171 Gla~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~-~~~~~~~~~i~~~~~~--~p~ 247 (304)
T 3ubd_A 171 GLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQG-KDRKETMTMILKAKLG--MPQ 247 (304)
T ss_dssp EEEEC-----CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCC-SSHHHHHHHHHHCCCC--CCT
T ss_pred CCCEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC-CCHHHHHHHHHCCCCC--CCC
T ss_conf 6343326887630454418150799996568878777636119999999859899898-4999999999718999--987
Q ss_pred CCCHHHHHHHHHHHH-CCCCCCC-----HHHHHCCCCCCCCCCC
Q ss_conf 899589999999961-8169999-----9888449556778863
Q 004645 251 VEDPEVRQFIEKCLA-TVSSRLS-----ARELLTDPFLQIDDYD 288 (740)
Q Consensus 251 ~~spelr~lI~kCL~-dP~kRpS-----a~ELL~hpfl~~~~~~ 288 (740)
..++++++||.+||+ +|.+||| +.++|+||||+..++.
T Consensus 248 ~~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~Hp~f~~idw~ 291 (304)
T 3ubd_A 248 FLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTIDWN 291 (304)
T ss_dssp TSCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHTSGGGTTCCHH
T ss_pred CCCHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHCCCCCCCCCHH
T ss_conf 68999999999986469878799986789999769040378999
No 8
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=417.40 Aligned_cols=249 Identities=26% Similarity=0.325 Sum_probs=214.5
Q ss_pred CCEEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEE
Q ss_conf 86358757752028569999998579909999997505557998899999999999983899982146568562588849
Q 004645 22 GRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEELERLYCEIHLLKTLKHRNIMKFYTSWVDTANRNI 101 (740)
Q Consensus 22 grY~rl~e~LG~GsfGtVyka~d~~tg~~VAiK~iki~~~~~s~~~~~~l~~Ei~iLk~L~HpNIVkl~~~fvd~~~~~i 101 (740)
-.+|++.++||+|+||+||+|+++.+|..||+|+++.... ..+|+.+|+.|+|||||++|++|.+ ...+
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~---------~~~E~~il~~l~HpnIV~l~~~~~~--~~~~ 125 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF---------RVEELVACAGLSSPRIVPLYGAVRE--GPWV 125 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC---------CTHHHHTTTTCCCTTBCCEEEEEEE--TTEE
T ss_pred HHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHH---------HHHHHHHHHHCCCCCCCCEEEEEEE--CCEE
T ss_conf 3351768685138780999999889998999999788886---------9999999985799899939999998--9999
Q ss_pred EEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEECCCCCEEEECCCHHHHHCC
Q ss_conf 99993368999899999648889999999999999999998709999030368878658708999289911440443304
Q 004645 102 NFVTEMFTSGTLRQYRLKHRRVNIRAVKHWCRQILSGLLYLHSRDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRK 181 (740)
Q Consensus 102 ~lV~Ey~~gGSL~~~l~~~k~l~~~~i~~i~~QIL~gL~yLHs~gp~IIHrDLKp~NILId~n~G~VKI~DFGlA~~l~~ 181 (740)
|+||||++||+|.+++.+.+.+++..++.|+.||+.||.|||+++ ||||||||+||||+.+..++||+|||+|..+..
T Consensus 126 ~ivmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~--IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~ 203 (336)
T 4g3f_A 126 NIFMELLEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTRR--ILHGDVKADNVLLSSDGSRAALCDFGHALCLQP 203 (336)
T ss_dssp EEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTT--EECSCCCGGGEEECTTSCCEEECCCTTCEEC--
T ss_pred EEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC--CEECCCCHHHEEEECCCCEEEEEECCCCEECCC
T ss_conf 999966599869999987699999999999999999999999889--042616778879958999799962787768567
Q ss_pred CC-------CCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCC-CCCCCCC
Q ss_conf 76-------643358888788200001-26842110101357999885379999999989999999819999-6344689
Q 004645 182 SH-------AARCVGTPEFMAPEVYEE-EYNELVDIYSFGMCILEMVTFDYPYSECTHPAQIYKKVISGKKP-EALFKVE 252 (740)
Q Consensus 182 ~~-------~~~~~GTp~YmAPEvl~~-~ys~~sDIWSLGiiLyELlTG~~Pf~~~~~~~~i~kki~~g~~p-~~~~~~~ 252 (740)
.. ....+||+.|||||++.+ .|+.++|||||||++|+|+||+.||.+.. ...++.++..+..+ ..++...
T Consensus 204 ~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~-~~~~~~~i~~~~~~~~~~~~~~ 282 (336)
T 4g3f_A 204 DGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYF-RGPLCLKIASEPPPIREIPPSC 282 (336)
T ss_dssp ----------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTC-CSCCHHHHHHSCCGGGGSCTTS
T ss_pred CCCCCCEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC-HHHHHHHHHCCCCCCHHCCCCC
T ss_conf 876540221785455802008999889998908999999999999997869989989-9999999980899800258667
Q ss_pred CHHHHHHHHHHHH-CCCCCCCHHHH-------------HCCCCCCC
Q ss_conf 9589999999961-81699999888-------------44955677
Q 004645 253 DPEVRQFIEKCLA-TVSSRLSAREL-------------LTDPFLQI 284 (740)
Q Consensus 253 spelr~lI~kCL~-dP~kRpSa~EL-------------L~hpfl~~ 284 (740)
++.+++||.+||. +|.+|||+.|+ |+|||++.
T Consensus 283 s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l~hPw~~~ 328 (336)
T 4g3f_A 283 APLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSPWKGE 328 (336)
T ss_dssp CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSSCSCSSSS
T ss_pred CHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999999999762897689599999999999975443216987677
No 9
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=1.00 E-value=1 Score=416.26 Aligned_cols=260 Identities=25% Similarity=0.381 Sum_probs=223.7
Q ss_pred CCEEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCC--CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCC
Q ss_conf 8635875775202856999999857990999999750555--79988999999999999838999821465685625888
Q 004645 22 GRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDF--LQSPEELERLYCEIHLLKTLKHRNIMKFYTSWVDTANR 99 (740)
Q Consensus 22 grY~rl~e~LG~GsfGtVyka~d~~tg~~VAiK~iki~~~--~~s~~~~~~l~~Ei~iLk~L~HpNIVkl~~~fvd~~~~ 99 (740)
..| ++.++||+|+||+||+|+++.+|..||+|+++.... ............++.+++.++|||||+++++|.+ ..
T Consensus 189 ddf-~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~--~~ 265 (689)
T 3v5w_A 189 NDF-SVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHT--PD 265 (689)
T ss_dssp GGE-EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEEC--SS
T ss_pred HHE-EEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE--CC
T ss_conf 892-888898316483999999999998999999757882525568999999999999964899987179999998--99
Q ss_pred EEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEECCCCCEEEECCCHHHHH
Q ss_conf 49999933689998999996488899999999999999999987099990303688786587089992899114404433
Q 004645 100 NINFVTEMFTSGTLRQYRLKHRRVNIRAVKHWCRQILSGLLYLHSRDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAIL 179 (740)
Q Consensus 100 ~i~lV~Ey~~gGSL~~~l~~~k~l~~~~i~~i~~QIL~gL~yLHs~gp~IIHrDLKp~NILId~n~G~VKI~DFGlA~~l 179 (740)
.+|+||||+.||+|..++.+.+.+++..++.|+.||+.||.|||++| ||||||||+||||+ .+|++||+|||+|..+
T Consensus 266 ~lylVmEy~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yLH~~g--IiHRDLKPeNILld-~~G~vKL~DFGlA~~~ 342 (689)
T 3v5w_A 266 KLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRF--VVYRDLKPANILLD-EHGHVRISDLGLACDF 342 (689)
T ss_dssp EEEEEECCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTTT--EECCCCSGGGEEEC-TTSCEEECCCTTCEEC
T ss_pred EEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCHHHEEEE-CCCCEEECCCCEEEEC
T ss_conf 88999946899829999986699999999999999999999999788--54168866875980-8998896456556663
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-C-CCCCCCCHHHHHHHHHHHHHCCCCCCCC--CCHHHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 047664335888878820000-1-2684211010135799988537999999--99899999998199996344689958
Q 004645 180 RKSHAARCVGTPEFMAPEVYE-E-EYNELVDIYSFGMCILEMVTFDYPYSEC--THPAQIYKKVISGKKPEALFKVEDPE 255 (740)
Q Consensus 180 ~~~~~~~~~GTp~YmAPEvl~-~-~ys~~sDIWSLGiiLyELlTG~~Pf~~~--~~~~~i~kki~~g~~p~~~~~~~spe 255 (740)
......+.+|||.|||||++. + .|+.++|||||||++|+|++|.+||.+. .....+++.+...... ++...+++
T Consensus 343 ~~~~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~~~--~p~~~S~~ 420 (689)
T 3v5w_A 343 SKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVE--LPDSFSPE 420 (689)
T ss_dssp SSCCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCCCC--CCTTSCHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCC--CCCCCCHH
T ss_conf 7898777657867318899847999995999999999999998687999999867799999850579888--87669999
Q ss_pred HHHHHHHHHH-CCCCCCC-----HHHHHCCCCCCCCCCCH
Q ss_conf 9999999961-8169999-----98884495567788632
Q 004645 256 VRQFIEKCLA-TVSSRLS-----ARELLTDPFLQIDDYDS 289 (740)
Q Consensus 256 lr~lI~kCL~-dP~kRpS-----a~ELL~hpfl~~~~~~~ 289 (740)
+++||.+||. +|.+|++ +.++++||||+..++..
T Consensus 421 a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~HpfF~~idW~~ 460 (689)
T 3v5w_A 421 LRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQM 460 (689)
T ss_dssp HHHHHHHHTCSCGGGCTTCSSSTHHHHTTSGGGTTCCHHH
T ss_pred HHHHHHHHCCCCHHHCCCCCCCCHHHHHCCCCCCCCCHHH
T ss_conf 9999999760898687999888999996691504789889
No 10
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=1.00 E-value=1 Score=409.87 Aligned_cols=257 Identities=25% Similarity=0.373 Sum_probs=226.3
Q ss_pred CCEEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEE
Q ss_conf 86358757752028569999998579909999997505557998899999999999983899982146568562588849
Q 004645 22 GRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEELERLYCEIHLLKTLKHRNIMKFYTSWVDTANRNI 101 (740)
Q Consensus 22 grY~rl~e~LG~GsfGtVyka~d~~tg~~VAiK~iki~~~~~s~~~~~~l~~Ei~iLk~L~HpNIVkl~~~fvd~~~~~i 101 (740)
++| ++.+.||+|+||+||+|.++.+|..||+|.++.. .....+.+.+|+.+|+.|+|||||+++++|.+ ...+
T Consensus 157 ~~Y-~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~----~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~--~~~~ 229 (573)
T 3uto_A 157 DHY-DIHEELGTGAFGVVHRVTERATGNNFAAKFVMTP----HESDKETVRKEIQTMSVLRHPTLVNLHDAFED--DNEM 229 (573)
T ss_dssp GTE-EEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC----SHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEC--SSEE
T ss_pred CCC-EEEEEEEECCCEEEEEEEECCCCCEEEEEEEECC----CHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE--CCEE
T ss_conf 361-8988996164849999999889989999999152----42059999999999986899898949999998--9988
Q ss_pred EEEEECCCCCCHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEECC-CCCEEEECCCHHHHH
Q ss_conf 999933689998999996-488899999999999999999987099990303688786587089-992899114404433
Q 004645 102 NFVTEMFTSGTLRQYRLK-HRRVNIRAVKHWCRQILSGLLYLHSRDPPVIHRDLKCDNIFVNGN-QGEVKIGDLGLAAIL 179 (740)
Q Consensus 102 ~lV~Ey~~gGSL~~~l~~-~k~l~~~~i~~i~~QIL~gL~yLHs~gp~IIHrDLKp~NILId~n-~G~VKI~DFGlA~~l 179 (740)
|+||||+.||+|.+++.. ...+++..++.|++||+.||.|||+++ |+||||||+|||++.+ .+.+||+|||+|..+
T Consensus 230 ~iv~E~~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~~~--iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~ 307 (573)
T 3uto_A 230 VMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENN--YVHLDLKPENIMFTTKRSNELKLIDFGLTAHL 307 (573)
T ss_dssp EEEEECCCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHHTT--EECCCCCGGGEEESSSSCCCEEECCCSSCEEC
T ss_pred EEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC--EEECCCCHHHCCCCCCCCCCEEEEECCCEEEC
T ss_conf 9998606999599999986799999999999999999999999889--23056876551214788897899406630685
Q ss_pred CCCC-CCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCC--CCCCCCCCCCHH
Q ss_conf 0476-643358888788200001-268421101013579998853799999999899999998199--996344689958
Q 004645 180 RKSH-AARCVGTPEFMAPEVYEE-EYNELVDIYSFGMCILEMVTFDYPYSECTHPAQIYKKVISGK--KPEALFKVEDPE 255 (740)
Q Consensus 180 ~~~~-~~~~~GTp~YmAPEvl~~-~ys~~sDIWSLGiiLyELlTG~~Pf~~~~~~~~i~kki~~g~--~p~~~~~~~spe 255 (740)
.... ....+||+.|||||++.+ .|+.++|||||||++|+|++|..||.+ .+..+++..+..+. .+...+...+++
T Consensus 308 ~~~~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~-~~~~~~~~~i~~~~~~~~~~~~~~~s~~ 386 (573)
T 3uto_A 308 DPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGG-ENDDETLRNVKSCDWNMDDSAFSGISED 386 (573)
T ss_dssp CTTSEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCC-SSHHHHHHHHHTTCCCCCSGGGTTSCHH
T ss_pred CCCCCEEEEEECCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf 699823234779451499996899989699999999999999978799798-6999999999848999895324689999
Q ss_pred HHHHHHHHHH-CCCCCCCHHHHHCCCCCCCCCCC
Q ss_conf 9999999961-81699999888449556778863
Q 004645 256 VRQFIEKCLA-TVSSRLSARELLTDPFLQIDDYD 288 (740)
Q Consensus 256 lr~lI~kCL~-dP~kRpSa~ELL~hpfl~~~~~~ 288 (740)
+++||.+||. +|.+||++.++|+||||+.....
T Consensus 387 ~~dli~~~L~~dp~~R~t~~e~l~Hpw~~~~~~~ 420 (573)
T 3uto_A 387 GKDFIRKLLLADPNTRMTIHQALEHPWLTPGNAP 420 (573)
T ss_dssp HHHHHHTTSCSSGGGSCCHHHHHHSTTTSCCCCT
T ss_pred HHHHHHHHCCCCHHHCCCHHHHHCCCCCCCCCCC
T ss_conf 9999998864895689299999539574879898
Done!