Query 004646
Match_columns 740
No_of_seqs 344 out of 2297
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 02:48:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004646.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004646hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0720 Molecular chaperone (D 100.0 6E-73 1.3E-77 611.0 4.4 445 190-699 11-460 (490)
2 COG0484 DnaJ DnaJ-class molecu 100.0 3.5E-48 7.5E-53 416.7 13.9 237 438-694 2-268 (371)
3 PRK14296 chaperone protein Dna 100.0 1.1E-39 2.5E-44 354.1 12.5 231 439-688 3-271 (372)
4 PRK14282 chaperone protein Dna 100.0 2.6E-39 5.7E-44 350.7 11.4 235 439-690 3-276 (369)
5 PRK14286 chaperone protein Dna 100.0 1E-38 2.2E-43 346.6 12.9 230 439-691 3-271 (372)
6 PRK14287 chaperone protein Dna 100.0 1.7E-38 3.7E-43 344.9 11.5 231 439-693 3-265 (371)
7 PRK14288 chaperone protein Dna 100.0 2.1E-38 4.5E-43 344.0 11.5 226 439-688 2-256 (369)
8 PRK14277 chaperone protein Dna 100.0 2.3E-38 5E-43 345.3 11.8 236 438-691 3-280 (386)
9 PRK14279 chaperone protein Dna 100.0 2.5E-38 5.3E-43 345.8 12.0 233 439-692 8-295 (392)
10 PRK14285 chaperone protein Dna 100.0 2.6E-38 5.7E-43 342.7 12.1 231 440-692 3-268 (365)
11 PRK14298 chaperone protein Dna 100.0 2E-38 4.4E-43 344.9 10.7 233 439-690 4-265 (377)
12 PRK14278 chaperone protein Dna 100.0 3.9E-38 8.6E-43 342.7 12.6 219 440-688 3-261 (378)
13 PRK14276 chaperone protein Dna 100.0 2.9E-38 6.3E-43 343.9 11.4 236 439-693 3-273 (380)
14 PRK14284 chaperone protein Dna 100.0 4.2E-38 9.1E-43 343.8 12.2 232 440-692 1-280 (391)
15 PTZ00037 DnaJ_C chaperone prot 100.0 6.7E-38 1.4E-42 345.0 11.4 217 440-688 28-272 (421)
16 PRK14297 chaperone protein Dna 100.0 1.1E-37 2.4E-42 339.3 11.7 221 439-688 3-270 (380)
17 PRK14280 chaperone protein Dna 100.0 1E-37 2.2E-42 339.2 11.1 231 439-688 3-265 (376)
18 PRK14294 chaperone protein Dna 100.0 2.6E-37 5.6E-42 334.9 13.8 226 439-689 3-263 (366)
19 PRK14281 chaperone protein Dna 100.0 2.4E-37 5.3E-42 338.5 13.0 231 440-688 3-284 (397)
20 PRK14301 chaperone protein Dna 100.0 2.6E-37 5.7E-42 335.8 13.1 232 439-691 3-265 (373)
21 PRK14291 chaperone protein Dna 100.0 5.1E-37 1.1E-41 334.4 12.8 223 440-688 3-273 (382)
22 PRK14295 chaperone protein Dna 100.0 6.3E-37 1.4E-41 334.5 11.9 232 439-691 8-287 (389)
23 TIGR02349 DnaJ_bact chaperone 100.0 1.4E-36 2.9E-41 327.5 12.3 233 441-692 1-269 (354)
24 PRK10767 chaperone protein Dna 100.0 1.3E-36 2.7E-41 329.9 11.8 222 439-689 3-261 (371)
25 PRK14289 chaperone protein Dna 100.0 2.5E-36 5.4E-41 329.2 14.1 240 439-695 4-283 (386)
26 PRK14290 chaperone protein Dna 100.0 2.5E-36 5.5E-41 327.1 12.0 228 440-691 3-271 (365)
27 PRK14293 chaperone protein Dna 100.0 2.2E-35 4.7E-40 320.8 15.6 235 440-693 3-270 (374)
28 PRK14300 chaperone protein Dna 100.0 8.6E-36 1.9E-40 323.8 11.6 228 440-698 3-285 (372)
29 PRK14283 chaperone protein Dna 100.0 1.3E-35 2.9E-40 322.9 11.7 232 438-688 3-268 (378)
30 KOG0712 Molecular chaperone (D 100.0 4.4E-35 9.6E-40 312.0 13.2 224 439-688 3-250 (337)
31 PRK14292 chaperone protein Dna 100.0 1.1E-34 2.4E-39 314.7 13.8 231 440-694 2-266 (371)
32 KOG0713 Molecular chaperone (D 99.9 2.4E-26 5.2E-31 243.5 8.3 73 435-509 11-83 (336)
33 KOG0715 Molecular chaperone (D 99.9 3E-26 6.4E-31 242.1 7.8 227 440-697 43-283 (288)
34 PRK10266 curved DNA-binding pr 99.8 1.9E-20 4.1E-25 199.2 9.0 66 440-508 4-69 (306)
35 PRK14299 chaperone protein Dna 99.8 3.7E-20 8E-25 195.8 7.5 68 439-509 3-70 (291)
36 KOG0691 Molecular chaperone (D 99.7 9.6E-18 2.1E-22 177.8 6.6 70 439-510 4-73 (296)
37 KOG0716 Molecular chaperone (D 99.7 1.4E-17 3.1E-22 172.6 5.9 68 440-509 31-98 (279)
38 PF14901 Jiv90: Cleavage induc 99.7 4E-17 8.6E-22 146.3 3.4 89 551-648 3-93 (94)
39 KOG0717 Molecular chaperone (D 99.7 1.4E-16 3E-21 174.4 7.6 68 440-509 8-76 (508)
40 PF00226 DnaJ: DnaJ domain; I 99.6 2.3E-16 5.1E-21 130.2 6.0 63 441-505 1-64 (64)
41 KOG0718 Molecular chaperone (D 99.6 1.3E-15 2.8E-20 166.9 5.9 69 439-509 8-79 (546)
42 PTZ00341 Ring-infected erythro 99.6 2E-15 4.3E-20 177.0 6.7 70 438-510 571-640 (1136)
43 KOG0719 Molecular chaperone (D 99.5 5.4E-15 1.2E-19 150.8 5.7 69 439-509 13-83 (264)
44 smart00271 DnaJ DnaJ molecular 99.5 1.3E-14 2.8E-19 117.9 6.4 59 440-500 1-60 (60)
45 COG2214 CbpA DnaJ-class molecu 99.5 8.6E-15 1.9E-19 141.8 6.4 67 439-507 5-72 (237)
46 cd06257 DnaJ DnaJ domain or J- 99.5 4.3E-14 9.3E-19 112.7 6.4 55 441-497 1-55 (55)
47 KOG0624 dsRNA-activated protei 99.5 8.6E-14 1.9E-18 148.9 7.6 76 437-517 391-469 (504)
48 TIGR03835 termin_org_DnaJ term 99.4 9.5E-14 2.1E-18 160.2 7.5 67 440-509 2-68 (871)
49 KOG0721 Molecular chaperone (D 99.4 1.4E-13 3E-18 139.5 6.7 72 437-510 96-167 (230)
50 PHA03102 Small T antigen; Revi 99.4 2E-13 4.3E-18 133.0 5.3 65 440-510 5-71 (153)
51 PRK05014 hscB co-chaperone Hsc 99.3 1.2E-12 2.5E-17 129.7 6.8 69 440-508 1-74 (171)
52 PRK01356 hscB co-chaperone Hsc 99.3 3.3E-12 7.1E-17 126.0 6.8 69 440-508 2-73 (166)
53 PRK03578 hscB co-chaperone Hsc 99.3 3.6E-12 7.8E-17 126.8 6.8 69 440-508 6-79 (176)
54 PRK00294 hscB co-chaperone Hsc 99.3 5.4E-12 1.2E-16 125.3 7.3 71 439-509 3-78 (173)
55 KOG0550 Molecular chaperone (D 99.3 3.1E-12 6.7E-17 139.6 5.6 71 435-507 368-439 (486)
56 KOG1150 Predicted molecular ch 99.3 1.9E-12 4.1E-17 129.8 3.6 90 415-506 22-118 (250)
57 KOG0714 Molecular chaperone (D 99.2 3.8E-12 8.2E-17 129.6 3.8 69 439-509 2-71 (306)
58 KOG0722 Molecular chaperone (D 99.2 1.1E-11 2.3E-16 128.2 3.0 69 440-511 33-101 (329)
59 PTZ00100 DnaJ chaperone protei 99.1 1.8E-10 4E-15 107.7 5.5 51 440-496 65-115 (116)
60 PRK09430 djlA Dna-J like membr 99.0 2.1E-10 4.5E-15 120.9 6.2 57 440-498 200-263 (267)
61 PHA02624 large T antigen; Prov 99.0 3.4E-10 7.4E-15 129.9 5.5 59 440-504 11-71 (647)
62 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.0 6E-10 1.3E-14 94.2 5.2 65 556-635 1-66 (66)
63 COG5407 SEC63 Preprotein trans 98.8 3.1E-09 6.6E-14 117.1 4.9 69 439-509 97-170 (610)
64 PRK01773 hscB co-chaperone Hsc 98.8 1.3E-08 2.9E-13 101.3 7.0 69 440-508 2-75 (173)
65 TIGR00714 hscB Fe-S protein as 98.7 1.5E-08 3.2E-13 99.4 6.1 57 453-509 2-63 (157)
66 COG5269 ZUO1 Ribosome-associat 98.6 1.8E-08 3.9E-13 105.4 3.9 70 438-507 41-113 (379)
67 KOG1789 Endocytosis protein RM 98.2 1.4E-06 3.1E-11 103.3 4.3 55 440-497 1281-1337(2235)
68 PLN03165 chaperone protein dna 97.9 1.3E-05 2.7E-10 75.1 5.0 61 551-638 39-99 (111)
69 KOG0568 Molecular chaperone (D 97.6 6.5E-05 1.4E-09 77.8 5.2 56 440-498 47-103 (342)
70 KOG0723 Molecular chaperone (D 96.9 0.0018 3.8E-08 60.3 5.5 50 443-498 59-108 (112)
71 KOG3192 Mitochondrial J-type c 96.8 0.0013 2.9E-08 64.8 4.6 72 437-508 5-81 (168)
72 TIGR02642 phage_xxxx uncharact 96.8 0.0011 2.3E-08 67.4 3.9 45 611-658 100-146 (186)
73 PRK14300 chaperone protein Dna 96.7 0.0022 4.7E-08 71.1 5.4 38 640-677 291-329 (372)
74 PRK14282 chaperone protein Dna 96.5 0.0021 4.5E-08 71.1 4.1 60 639-698 301-362 (369)
75 COG0484 DnaJ DnaJ-class molecu 96.3 0.0053 1.1E-07 68.2 5.4 34 643-677 292-327 (371)
76 PRK14284 chaperone protein Dna 96.1 0.012 2.5E-07 65.9 6.9 37 641-677 306-343 (391)
77 COG1107 Archaea-specific RecJ- 96.0 0.0031 6.8E-08 72.7 1.9 69 554-636 3-79 (715)
78 PRK14290 chaperone protein Dna 95.9 0.0073 1.6E-07 66.8 4.5 37 641-677 296-333 (365)
79 PRK14294 chaperone protein Dna 95.9 0.006 1.3E-07 67.5 3.7 36 642-677 291-327 (366)
80 PRK14301 chaperone protein Dna 95.8 0.011 2.4E-07 65.7 5.3 36 642-677 291-327 (373)
81 PRK14291 chaperone protein Dna 95.8 0.015 3.3E-07 64.8 6.1 39 639-677 300-339 (382)
82 PRK14285 chaperone protein Dna 95.8 0.0068 1.5E-07 67.1 3.3 39 639-677 291-330 (365)
83 TIGR02349 DnaJ_bact chaperone 95.7 0.01 2.2E-07 65.2 4.5 36 642-677 294-330 (354)
84 PRK14286 chaperone protein Dna 95.6 0.03 6.5E-07 62.2 7.4 38 640-677 296-334 (372)
85 PRK14295 chaperone protein Dna 95.5 0.034 7.3E-07 62.2 7.5 37 640-677 312-349 (389)
86 PRK14289 chaperone protein Dna 95.5 0.029 6.3E-07 62.5 6.9 36 642-677 305-341 (386)
87 PRK10767 chaperone protein Dna 95.4 0.014 3E-07 64.7 4.0 36 642-677 289-325 (371)
88 PRK14278 chaperone protein Dna 95.3 0.042 9E-07 61.3 7.6 38 640-677 289-327 (378)
89 KOG0431 Auxilin-like protein a 95.1 0.025 5.4E-07 64.6 5.1 42 454-495 400-448 (453)
90 COG1076 DjlA DnaJ-domain-conta 94.9 0.016 3.6E-07 57.8 2.6 67 441-507 2-73 (174)
91 PRK14297 chaperone protein Dna 94.9 0.057 1.2E-06 60.1 7.0 36 642-677 299-335 (380)
92 PRK14281 chaperone protein Dna 94.8 0.063 1.4E-06 60.2 7.3 36 642-677 313-349 (397)
93 PRK14287 chaperone protein Dna 94.8 0.024 5.3E-07 62.9 3.9 36 642-677 289-325 (371)
94 COG1076 DjlA DnaJ-domain-conta 94.8 0.021 4.5E-07 57.1 3.0 53 440-494 113-172 (174)
95 PRK14298 chaperone protein Dna 94.7 0.022 4.7E-07 63.5 3.2 36 642-677 292-328 (377)
96 PRK14283 chaperone protein Dna 94.5 0.093 2E-06 58.5 7.4 36 642-677 297-333 (378)
97 PRK14280 chaperone protein Dna 94.3 0.13 2.7E-06 57.4 7.9 36 642-677 294-330 (376)
98 PF05297 Herpes_LMP1: Herpesvi 93.7 0.019 4.1E-07 61.7 0.0 16 219-234 27-43 (381)
99 PRK14292 chaperone protein Dna 93.6 0.15 3.3E-06 56.6 6.9 35 643-677 290-325 (371)
100 PRK14276 chaperone protein Dna 91.9 0.93 2E-05 50.7 10.1 36 642-677 297-333 (380)
101 KOG2813 Predicted molecular ch 91.3 0.24 5.1E-06 54.3 4.4 32 613-648 248-279 (406)
102 PF00684 DnaJ_CXXCXGXG: DnaJ c 90.6 0.19 4.2E-06 42.7 2.5 49 552-621 14-66 (66)
103 PRK14279 chaperone protein Dna 90.0 0.22 4.7E-06 56.0 3.0 35 642-677 320-355 (392)
104 KOG2813 Predicted molecular ch 88.6 0.34 7.4E-06 53.1 3.1 23 610-636 234-256 (406)
105 PRK14288 chaperone protein Dna 87.9 0.35 7.6E-06 53.9 2.7 37 641-677 285-322 (369)
106 TIGR03835 termin_org_DnaJ term 87.1 0.14 3.1E-06 61.5 -0.9 56 631-688 687-744 (871)
107 PRK14296 chaperone protein Dna 86.6 0.52 1.1E-05 52.6 3.1 34 643-677 302-338 (372)
108 PTZ00037 DnaJ_C chaperone prot 86.5 0.5 1.1E-05 53.8 3.0 38 640-677 300-341 (421)
109 PRK14277 chaperone protein Dna 85.8 0.68 1.5E-05 51.9 3.5 49 553-623 172-224 (386)
110 PRK10263 DNA translocase FtsK; 85.0 4.6 0.0001 51.8 10.4 6 149-154 17-22 (1355)
111 PF03656 Pam16: Pam16; InterP 84.1 2.3 4.9E-05 41.2 5.8 53 442-500 60-112 (127)
112 COG1107 Archaea-specific RecJ- 83.5 0.56 1.2E-05 55.0 1.6 32 550-595 50-81 (715)
113 PF09726 Macoilin: Transmembra 82.1 45 0.00099 40.7 16.8 57 197-275 43-100 (697)
114 TIGR02642 phage_xxxx uncharact 82.1 0.81 1.8E-05 46.9 2.0 34 551-597 97-130 (186)
115 PRK14293 chaperone protein Dna 81.3 1.1 2.4E-05 50.0 2.8 35 643-677 295-331 (374)
116 KOG0724 Zuotin and related mol 79.9 1.8 3.9E-05 47.2 3.9 54 454-507 4-61 (335)
117 KOG4800 Neuronal membrane glyc 79.8 8.2 0.00018 40.8 8.3 50 248-313 57-106 (248)
118 PLN03165 chaperone protein dna 79.8 1.9 4.1E-05 40.9 3.4 46 554-624 53-99 (111)
119 KOG2292 Oligosaccharyltransfer 79.5 2.5 5.5E-05 49.4 4.9 86 272-357 147-259 (751)
120 PF11808 DUF3329: Domain of un 78.7 4.8 0.0001 36.4 5.6 31 268-298 11-41 (90)
121 COG4709 Predicted membrane pro 78.1 24 0.00052 36.6 10.8 45 238-282 82-126 (195)
122 PF03208 PRA1: PRA1 family pro 76.9 17 0.00037 35.1 9.3 35 291-326 101-135 (153)
123 PF10011 DUF2254: Predicted me 76.7 18 0.00039 40.5 10.6 130 216-348 11-147 (371)
124 PF09605 Trep_Strep: Hypotheti 75.2 24 0.00053 35.9 10.2 65 287-351 59-127 (186)
125 cd06181 BI-1-like BAX inhibito 71.8 1.2E+02 0.0026 30.9 14.7 45 224-268 50-95 (212)
126 PF03208 PRA1: PRA1 family pro 70.6 11 0.00024 36.4 6.3 71 267-341 43-114 (153)
127 PF04156 IncA: IncA protein; 69.0 18 0.0004 36.1 7.6 10 271-280 19-28 (191)
128 PF12051 DUF3533: Protein of u 65.7 34 0.00073 38.3 9.6 132 207-363 198-335 (382)
129 PRK11644 sensory histidine kin 65.5 73 0.0016 36.9 12.5 23 279-303 136-158 (495)
130 PRK11598 putative metal depend 64.1 34 0.00074 40.5 9.6 43 247-289 51-97 (545)
131 PF07331 TctB: Tripartite tric 63.7 1.3E+02 0.0028 28.3 11.8 27 206-232 34-60 (141)
132 PF14687 DUF4460: Domain of un 62.8 15 0.00033 34.8 5.3 45 454-498 6-54 (112)
133 PF03348 Serinc: Serine incorp 61.9 22 0.00048 40.8 7.4 77 232-318 64-155 (429)
134 PF08507 COPI_assoc: COPI asso 61.6 1.5E+02 0.0032 28.6 11.9 48 248-295 33-80 (136)
135 COG1480 Predicted membrane-ass 61.2 1E+02 0.0022 37.7 12.7 19 341-359 424-442 (700)
136 PF05297 Herpes_LMP1: Herpesvi 59.9 2.9 6.4E-05 45.5 0.0 39 330-368 147-187 (381)
137 PRK12585 putative monovalent c 59.6 37 0.0008 35.3 7.7 14 255-268 16-29 (197)
138 PRK05771 V-type ATP synthase s 58.5 1.9E+02 0.004 34.9 14.6 20 319-338 561-580 (646)
139 KOG0828 Predicted E3 ubiquitin 57.9 1.2E+02 0.0027 35.7 12.1 49 140-188 269-320 (636)
140 PHA03239 envelope glycoprotein 57.4 65 0.0014 37.3 10.0 56 246-301 254-309 (429)
141 PF03142 Chitin_synth_2: Chiti 55.7 38 0.00082 40.1 8.0 14 214-227 369-383 (527)
142 PF13446 RPT: A repeated domai 55.3 19 0.0004 30.1 4.0 26 441-468 6-31 (62)
143 PF14362 DUF4407: Domain of un 55.2 21 0.00046 38.4 5.6 20 456-475 155-174 (301)
144 COG0178 UvrA Excinuclease ATPa 54.6 11 0.00023 46.6 3.4 43 577-648 732-774 (935)
145 TIGR00630 uvra excinuclease AB 54.0 6.4 0.00014 49.2 1.5 16 576-598 737-752 (924)
146 PF12036 DUF3522: Protein of u 53.3 48 0.001 33.9 7.4 23 282-304 115-137 (186)
147 PF07857 DUF1632: CEO family ( 53.0 29 0.00062 37.4 6.0 11 337-348 96-106 (254)
148 PF07698 7TM-7TMR_HD: 7TM rece 52.6 2.5E+02 0.0054 28.0 14.0 58 265-322 62-119 (194)
149 PF10710 DUF2512: Protein of u 51.5 1.7E+02 0.0037 28.8 10.5 26 284-309 57-82 (136)
150 PF13994 PgaD: PgaD-like prote 51.2 51 0.0011 32.0 6.9 20 243-262 14-33 (138)
151 PRK09598 lipid A phosphoethano 50.6 73 0.0016 37.6 9.3 18 248-265 50-67 (522)
152 PLN02922 prenyltransferase 50.3 63 0.0014 35.7 8.2 18 287-304 123-140 (315)
153 TIGR02235 menA_cyano-plnt 1,4- 49.3 75 0.0016 34.5 8.5 29 276-304 93-123 (285)
154 KOG2927 Membrane component of 48.9 30 0.00066 38.9 5.5 28 274-305 224-251 (372)
155 PF11833 DUF3353: Protein of u 48.8 27 0.00059 36.1 4.8 38 453-498 3-40 (194)
156 TIGR00947 2A73 probable bicarb 48.1 2.3E+02 0.0049 32.4 12.5 23 331-353 206-228 (425)
157 PF09726 Macoilin: Transmembra 47.6 1.5E+02 0.0033 36.4 11.5 20 250-269 51-70 (697)
158 PRK02983 lysS lysyl-tRNA synth 46.2 5.6E+02 0.012 33.3 16.6 35 456-493 356-397 (1094)
159 PRK10726 hypothetical protein; 46.2 81 0.0017 29.9 6.9 63 241-304 40-104 (105)
160 PF01098 FTSW_RODA_SPOVE: Cell 46.2 94 0.002 34.4 8.9 34 215-248 67-101 (358)
161 COG2194 Predicted membrane-ass 45.6 2.9E+02 0.0063 33.1 13.2 24 268-291 72-95 (555)
162 TIGR02185 Trep_Strep conserved 45.6 1.3E+02 0.0029 30.7 9.2 31 288-318 62-92 (189)
163 TIGR00540 hemY_coli hemY prote 45.4 43 0.00093 37.4 6.2 26 263-288 1-26 (409)
164 smart00778 Prim_Zn_Ribbon Zinc 45.3 15 0.00032 28.6 1.8 31 552-582 2-32 (37)
165 PF03904 DUF334: Domain of unk 45.2 19 0.0004 38.3 3.0 17 334-351 202-218 (230)
166 PRK05771 V-type ATP synthase s 45.2 1.1E+02 0.0023 36.9 9.7 73 235-311 326-418 (646)
167 TIGR00751 menA 1,4-dihydroxy-2 43.9 88 0.0019 34.0 8.0 17 288-304 110-126 (284)
168 PF12805 FUSC-like: FUSC-like 43.8 61 0.0013 34.7 6.8 20 479-498 239-258 (284)
169 PRK00247 putative inner membra 43.7 86 0.0019 36.3 8.2 17 296-312 250-266 (429)
170 PRK13706 conjugal transfer pil 43.1 4.5E+02 0.0098 28.6 12.9 100 214-320 58-170 (248)
171 KOG2824 Glutaredoxin-related p 42.9 19 0.00041 39.3 2.7 51 554-632 230-280 (281)
172 PRK10747 putative protoheme IX 42.9 53 0.0011 36.7 6.4 26 263-288 1-26 (398)
173 TIGR01654 bact_immun_7tm bacte 42.8 2.1E+02 0.0047 34.7 11.8 73 212-286 168-241 (679)
174 PF03547 Mem_trans: Membrane t 42.5 4E+02 0.0087 29.2 13.0 19 337-355 99-117 (385)
175 PRK10490 sensor protein KdpD; 42.2 66 0.0014 40.2 7.6 35 265-304 429-463 (895)
176 PF04515 Choline_transpo: Plas 42.0 1.3E+02 0.0029 32.4 9.1 46 269-314 24-69 (334)
177 KOG2592 Tumor differentially e 41.9 48 0.001 37.9 5.7 46 232-277 68-126 (426)
178 PRK01637 hypothetical protein; 41.8 1.6E+02 0.0034 31.7 9.5 8 299-306 213-220 (286)
179 PF14800 DUF4481: Domain of un 41.6 40 0.00086 37.3 4.9 17 248-264 72-88 (308)
180 KOG3618 Adenylyl cyclase [Gene 41.3 2E+02 0.0043 36.0 10.8 60 204-271 69-128 (1318)
181 PRK07419 1,4-dihydroxy-2-napht 41.3 98 0.0021 34.0 8.0 18 287-304 119-136 (304)
182 TIGR02755 TraX_Ftype type-F co 41.2 3E+02 0.0065 29.4 11.1 20 214-238 34-53 (224)
183 TIGR01652 ATPase-Plipid phosph 41.1 4.4E+02 0.0096 33.8 14.6 29 343-372 1020-1048(1057)
184 COG1480 Predicted membrane-ass 40.7 1.6E+02 0.0035 36.1 10.1 11 305-315 376-386 (700)
185 TIGR00630 uvra excinuclease AB 40.4 15 0.00033 46.0 1.8 36 547-582 729-766 (924)
186 PF04632 FUSC: Fusaric acid re 40.0 2.1E+02 0.0046 33.7 11.1 75 203-283 330-406 (650)
187 PRK09459 pspG phage shock prot 40.0 1.6E+02 0.0036 26.5 7.5 30 272-305 34-63 (76)
188 TIGR00844 c_cpa1 na(+)/h(+) an 39.5 1.6E+02 0.0035 36.8 10.1 8 342-349 362-369 (810)
189 KOG0712 Molecular chaperone (D 39.1 18 0.00038 40.5 1.9 49 555-623 145-198 (337)
190 PF11744 ALMT: Aluminium activ 38.4 1.2E+02 0.0025 35.0 8.2 14 244-257 37-50 (406)
191 PRK10862 SoxR reducing system 38.3 1.2E+02 0.0025 30.3 7.3 43 263-305 77-122 (154)
192 KOG2041 WD40 repeat protein [G 38.2 1.8E+02 0.0039 36.1 9.7 32 158-189 657-692 (1189)
193 COG3671 Predicted membrane pro 38.2 1.1E+02 0.0024 29.8 6.7 46 274-319 38-83 (125)
194 COG0600 TauC ABC-type nitrate/ 37.9 3.8E+02 0.0083 29.0 11.6 91 215-305 12-124 (258)
195 PRK00488 pheS phenylalanyl-tRN 37.9 17 0.00037 40.7 1.5 32 550-606 257-288 (339)
196 PF07332 DUF1469: Protein of u 37.8 1.5E+02 0.0034 27.4 7.7 7 287-293 73-79 (121)
197 PRK14559 putative protein seri 37.3 18 0.00038 43.8 1.7 50 554-635 2-51 (645)
198 PF06398 Pex24p: Integral pero 37.1 1.6E+02 0.0034 32.6 8.8 38 293-330 158-195 (359)
199 PRK10189 MATE family multidrug 36.8 2.9E+02 0.0063 31.8 11.2 18 161-178 146-163 (478)
200 PF08273 Prim_Zn_Ribbon: Zinc- 36.6 17 0.00036 28.8 0.8 31 552-582 2-33 (40)
201 PRK13591 ubiA prenyltransferas 36.4 1.9E+02 0.0041 32.2 9.2 19 287-305 119-137 (307)
202 PRK10160 taurine transporter s 36.4 4.5E+02 0.0097 28.1 11.9 9 203-211 12-20 (275)
203 PHA02680 ORF090 IMV phosphoryl 36.3 95 0.002 28.7 5.6 59 265-343 13-76 (91)
204 KOG4453 Predicted ER membrane 35.3 3.1E+02 0.0068 29.6 10.1 119 156-305 63-214 (269)
205 PRK12287 tqsA pheromone autoin 35.2 5.4E+02 0.012 28.4 12.6 13 344-356 306-318 (344)
206 PF10112 Halogen_Hydrol: 5-bro 34.9 1.1E+02 0.0024 31.1 6.7 20 455-476 137-156 (199)
207 PRK11560 phosphoethanolamine t 34.2 3.4E+02 0.0074 32.6 11.4 45 247-291 49-99 (558)
208 COG1198 PriA Primosomal protei 34.2 35 0.00076 41.9 3.4 53 550-634 432-484 (730)
209 TIGR01666 YCCS hypothetical me 34.1 88 0.0019 38.4 6.8 40 458-497 273-313 (704)
210 PF03839 Sec62: Translocation 34.1 1.2E+02 0.0027 32.2 7.1 31 214-245 108-138 (224)
211 COG4758 Predicted membrane pro 33.5 2.9E+02 0.0063 29.7 9.6 6 274-279 35-40 (235)
212 PF07264 EI24: Etoposide-induc 33.4 2.2E+02 0.0047 28.7 8.6 21 246-266 15-36 (219)
213 PF12805 FUSC-like: FUSC-like 32.9 1.9E+02 0.0041 31.0 8.4 12 307-318 72-83 (284)
214 KOG2946 Uncharacterized conser 32.9 81 0.0018 33.6 5.4 37 282-321 159-195 (234)
215 PHA03048 IMV membrane protein; 32.9 1.2E+02 0.0025 28.3 5.6 25 307-343 51-75 (93)
216 COG5265 ATM1 ABC-type transpor 32.5 1.7E+02 0.0036 34.4 8.1 84 218-311 21-104 (497)
217 PHA03242 envelope glycoprotein 32.4 1.2E+02 0.0026 35.1 7.1 67 246-312 245-311 (428)
218 PF11239 DUF3040: Protein of u 32.4 95 0.0021 27.5 5.1 16 287-302 62-77 (82)
219 PF03419 Peptidase_U4: Sporula 32.1 5.5E+02 0.012 27.8 11.8 50 221-270 12-62 (293)
220 PF14362 DUF4407: Domain of un 31.8 4E+02 0.0086 28.8 10.7 25 205-230 5-29 (301)
221 TIGR03663 conserved hypothetic 31.7 7.1E+02 0.015 28.8 13.2 14 273-286 152-165 (439)
222 PF13886 DUF4203: Domain of un 31.6 4.7E+02 0.01 26.8 10.7 28 306-333 114-141 (210)
223 PF10947 DUF2628: Protein of u 31.5 3.1E+02 0.0067 25.1 8.5 15 247-261 42-56 (108)
224 PRK00349 uvrA excinuclease ABC 31.3 33 0.00071 43.3 2.7 17 575-598 738-754 (943)
225 KOG0065 Pleiotropic drug resis 31.3 1.1E+03 0.024 31.7 15.6 133 222-355 468-638 (1391)
226 PRK10245 adrA diguanylate cycl 31.2 1.3E+02 0.0027 33.6 7.0 15 248-262 101-115 (366)
227 PF07158 MatC_N: Dicarboxylate 31.1 90 0.0019 31.3 5.1 59 269-327 7-72 (149)
228 COG4420 Predicted membrane pro 31.0 51 0.0011 34.2 3.5 59 289-374 59-117 (191)
229 TIGR01652 ATPase-Plipid phosph 30.9 3.8E+02 0.0082 34.4 11.8 11 300-310 971-981 (1057)
230 cd03031 GRX_GRX_like Glutaredo 30.9 31 0.00066 34.2 1.9 44 555-622 101-144 (147)
231 PRK14714 DNA polymerase II lar 30.7 33 0.00072 44.2 2.5 57 553-642 667-726 (1337)
232 COG4858 Uncharacterized membra 30.4 1.5E+02 0.0033 31.0 6.7 18 291-308 165-182 (226)
233 PRK13857 type IV secretion sys 30.3 99 0.0022 30.0 5.0 38 286-323 71-108 (120)
234 PF12955 DUF3844: Domain of un 30.2 57 0.0012 30.8 3.4 29 246-274 65-93 (103)
235 PF06341 DUF1056: Protein of u 30.1 2.7E+02 0.0059 24.3 7.1 39 249-294 6-44 (63)
236 KOG4623 Uncharacterized conser 30.0 4.3E+02 0.0093 31.6 10.8 17 59-75 51-67 (611)
237 PF01027 Bax1-I: Inhibitor of 29.9 5.7E+02 0.012 25.4 13.2 20 287-306 124-143 (205)
238 PRK10907 intramembrane serine 29.9 3.4E+02 0.0073 29.7 9.7 49 205-255 132-180 (276)
239 PRK10794 cell wall shape-deter 29.8 6.2E+02 0.014 28.6 12.1 31 218-248 79-109 (370)
240 PRK13735 conjugal transfer mat 29.8 1.7E+02 0.0038 37.2 8.4 69 297-365 360-428 (942)
241 COG0598 CorA Mg2+ and Co2+ tra 29.7 5.9E+02 0.013 27.9 11.7 14 274-287 277-290 (322)
242 PF12351 Fig1: Ca2+ regulator 29.5 6.3E+02 0.014 25.8 11.4 61 248-308 110-170 (182)
243 smart00730 PSN Presenilin, sig 29.3 7.4E+02 0.016 26.6 13.6 10 441-450 169-178 (249)
244 PF06738 DUF1212: Protein of u 29.2 4.2E+02 0.009 26.5 9.7 9 229-237 124-132 (193)
245 KOG3533 Inositol 1,4,5-trispho 29.2 6.2E+02 0.013 34.0 12.5 29 337-367 2415-2443(2706)
246 PRK12887 ubiA tocopherol phyty 29.2 1.4E+02 0.003 32.8 6.7 18 287-304 120-137 (308)
247 cd03031 GRX_GRX_like Glutaredo 29.1 62 0.0014 32.0 3.7 25 612-637 112-145 (147)
248 COG1863 MnhE Multisubunit Na+/ 29.0 84 0.0018 31.7 4.6 24 285-308 22-46 (158)
249 PRK05951 ubiA prenyltransferas 29.0 2.3E+02 0.005 30.8 8.3 18 287-304 116-133 (296)
250 PF09605 Trep_Strep: Hypotheti 28.9 5.8E+02 0.013 26.0 10.7 65 241-307 55-123 (186)
251 PF03348 Serinc: Serine incorp 28.9 2.8E+02 0.0062 32.1 9.4 38 281-318 183-228 (429)
252 COG3846 TrbL Type IV secretory 28.8 2.1E+02 0.0046 33.4 8.2 67 240-312 149-215 (452)
253 PF07857 DUF1632: CEO family ( 28.8 1E+02 0.0022 33.3 5.5 81 205-306 22-102 (254)
254 PF11026 DUF2721: Protein of u 28.8 1.8E+02 0.0039 28.1 6.6 15 252-266 62-76 (130)
255 PF14752 RBP_receptor: Retinol 28.7 8.3E+02 0.018 29.9 13.4 77 291-369 410-511 (617)
256 TIGR00844 c_cpa1 na(+)/h(+) an 28.6 2.9E+02 0.0063 34.7 9.8 13 345-357 326-338 (810)
257 PRK01766 multidrug efflux prot 28.5 8.7E+02 0.019 27.2 16.4 67 292-358 354-433 (456)
258 COG0266 Nei Formamidopyrimidin 27.8 85 0.0019 34.3 4.7 29 552-582 244-272 (273)
259 PF03739 YjgP_YjgQ: Predicted 27.7 5.7E+02 0.012 27.6 11.1 93 219-312 12-116 (354)
260 COG5547 Small integral membran 27.7 1E+02 0.0022 26.6 4.0 21 297-317 20-40 (62)
261 PRK12768 CysZ-like protein; Re 27.6 5.3E+02 0.012 27.6 10.5 20 239-258 7-26 (240)
262 KOG1134 Uncharacterized conser 27.5 1.1E+03 0.023 29.4 14.4 89 173-265 469-568 (728)
263 TIGR02210 rodA_shape rod shape 27.5 7.4E+02 0.016 27.7 12.1 30 219-248 65-94 (352)
264 PF03811 Zn_Tnp_IS1: InsA N-te 27.4 43 0.00092 25.9 1.7 30 552-581 4-35 (36)
265 KOG1362 Choline transporter-li 27.2 1.2E+03 0.026 28.3 20.0 36 279-314 262-297 (577)
266 COG4317 Uncharacterized protei 27.2 83 0.0018 28.8 3.7 31 269-299 4-41 (93)
267 PF07787 DUF1625: Protein of u 27.1 1.4E+02 0.003 31.6 6.1 18 208-225 177-194 (248)
268 KOG2322 N-methyl-D-aspartate r 27.1 6E+02 0.013 27.5 10.6 64 219-282 88-153 (237)
269 PRK04023 DNA polymerase II lar 27.1 46 0.001 42.1 2.8 25 612-639 653-677 (1121)
270 PF10337 DUF2422: Protein of u 27.1 4.9E+02 0.011 29.9 10.9 40 190-229 16-55 (459)
271 PRK01265 heat shock protein Ht 27.0 2.8E+02 0.0061 31.0 8.6 10 274-283 25-34 (324)
272 PF04246 RseC_MucC: Positive r 26.9 2.6E+02 0.0056 26.7 7.4 13 273-285 82-94 (135)
273 PF05478 Prominin: Prominin; 26.9 1.9E+02 0.0041 36.0 8.0 31 288-318 459-489 (806)
274 TIGR00870 trp transient-recept 26.5 8.3E+02 0.018 29.7 13.2 15 346-360 586-600 (743)
275 PF12084 DUF3561: Protein of u 26.3 1.1E+02 0.0024 29.2 4.5 53 242-303 44-106 (107)
276 KOG3882 Tetraspanin family int 26.3 2.3E+02 0.0049 29.3 7.4 29 214-242 17-45 (237)
277 PRK06080 1,4-dihydroxy-2-napht 26.2 2.7E+02 0.0059 29.8 8.2 19 287-305 113-131 (293)
278 TIGR03155 sulfolob_CbsB cytoch 26.0 8.1E+02 0.018 27.0 11.3 47 241-287 42-88 (302)
279 PF08113 CoxIIa: Cytochrome c 25.9 1.1E+02 0.0024 23.6 3.6 13 288-300 8-20 (34)
280 PHA02898 virion envelope prote 25.9 1.5E+02 0.0032 27.5 5.1 59 265-342 13-75 (92)
281 TIGR00955 3a01204 The Eye Pigm 25.8 1.2E+03 0.026 27.9 15.1 10 294-303 454-463 (617)
282 PRK13387 1,4-dihydroxy-2-napht 25.8 1.6E+02 0.0035 32.4 6.5 19 287-305 114-132 (317)
283 PRK13706 conjugal transfer pil 25.7 4.1E+02 0.009 28.8 9.3 16 251-266 115-130 (248)
284 PRK11204 N-glycosyltransferase 25.4 7.3E+02 0.016 27.6 11.7 13 173-185 266-278 (420)
285 PF10129 OpgC_C: OpgC protein; 25.3 2.7E+02 0.006 31.3 8.3 67 229-308 288-354 (358)
286 PRK06638 NADH:ubiquinone oxido 24.7 1.8E+02 0.004 30.0 6.3 19 295-313 54-72 (198)
287 PLN00012 chlorophyll synthetas 24.7 3.3E+02 0.0071 31.0 8.8 20 286-305 196-215 (375)
288 TIGR03717 R_switched_YjbE inte 24.5 6.2E+02 0.013 25.8 9.9 59 305-369 95-153 (176)
289 COG1295 Rbn Ribonuclease BN fa 24.5 9.5E+02 0.021 26.3 15.2 22 240-261 187-208 (303)
290 PHA03237 envelope glycoprotein 24.5 1.9E+02 0.0041 33.6 6.9 66 246-311 248-313 (424)
291 COG3704 VirB6 Type IV secretor 24.4 3.3E+02 0.0072 31.5 8.8 25 244-268 191-215 (406)
292 PF03833 PolC_DP2: DNA polymer 24.3 25 0.00055 43.5 0.0 27 612-641 682-708 (900)
293 KOG4452 Predicted membrane pro 24.3 1.2E+02 0.0026 26.9 4.0 39 249-287 30-68 (79)
294 PRK00635 excinuclease ABC subu 24.1 34 0.00073 46.0 1.0 21 626-646 1631-1651(1809)
295 TIGR01299 synapt_SV2 synaptic 24.1 8.7E+02 0.019 30.1 12.9 160 191-353 136-299 (742)
296 PRK12873 ubiA prenyltransferas 24.1 3.7E+02 0.0079 29.6 8.8 18 270-287 144-161 (294)
297 TIGR02921 PEP_integral PEP-CTE 24.0 3.2E+02 0.0069 33.4 8.6 107 247-365 7-113 (952)
298 PRK10929 putative mechanosensi 24.0 6.7E+02 0.014 32.8 12.1 15 175-189 426-440 (1109)
299 PRK10649 hypothetical protein; 23.8 3.2E+02 0.0069 32.7 8.9 17 242-258 67-83 (577)
300 PF02673 BacA: Bacitracin resi 23.8 3.4E+02 0.0073 29.3 8.3 26 209-234 36-61 (259)
301 COG3086 RseC Positive regulato 23.7 1.9E+02 0.0042 29.1 5.9 34 261-294 75-110 (150)
302 PF07086 DUF1352: Protein of u 23.7 7.6E+02 0.016 25.7 10.4 63 201-265 19-87 (186)
303 PF01556 CTDII: DnaJ C termina 23.5 35 0.00075 29.8 0.7 39 639-677 25-65 (81)
304 TIGR02975 phageshock_pspG phag 23.4 4.7E+02 0.01 23.0 7.3 9 297-305 54-62 (64)
305 PF09788 Tmemb_55A: Transmembr 23.4 1.5E+02 0.0034 32.1 5.6 20 122-143 94-113 (256)
306 PF07290 DUF1449: Protein of u 23.2 2.5E+02 0.0055 29.4 7.0 25 240-265 56-80 (202)
307 PF13903 Claudin_2: PMP-22/EMP 23.2 5E+02 0.011 24.6 8.7 17 337-353 148-164 (172)
308 MTH00057 ND6 NADH dehydrogenas 23.0 1.5E+02 0.0034 30.3 5.3 15 298-312 54-68 (186)
309 KOG4812 Golgi-associated prote 22.7 1.6E+02 0.0035 31.9 5.5 17 242-260 155-171 (262)
310 PRK10774 cell division protein 22.6 6.2E+02 0.014 29.1 10.6 30 219-248 106-135 (404)
311 KOG2824 Glutaredoxin-related p 22.6 92 0.002 34.2 3.7 31 552-582 239-269 (281)
312 PRK09776 putative diguanylate 22.5 6.6E+02 0.014 31.4 11.6 146 220-368 104-273 (1092)
313 TIGR00757 RNaseEG ribonuclease 22.4 38 0.00082 38.9 0.9 19 453-471 164-182 (414)
314 TIGR02872 spore_ytvI sporulati 22.2 2.5E+02 0.0053 30.1 7.0 20 334-353 307-326 (341)
315 PRK08156 type III secretion sy 22.2 1.2E+03 0.026 26.6 13.7 16 353-368 185-200 (361)
316 PF02361 CbiQ: Cobalt transpor 22.2 7.8E+02 0.017 24.4 10.9 7 458-464 164-170 (224)
317 KOG4455 Uncharacterized conser 22.1 4.2E+02 0.009 25.5 7.4 66 256-339 42-108 (110)
318 PRK10862 SoxR reducing system 22.0 2.4E+02 0.0053 28.0 6.4 6 290-295 82-87 (154)
319 CHL00016 ndhG NADH dehydrogena 21.9 2.6E+02 0.0056 28.5 6.7 11 298-308 61-71 (182)
320 PRK03564 formate dehydrogenase 21.9 66 0.0014 35.7 2.6 30 552-581 186-218 (309)
321 KOG0916 1,3-beta-glucan syntha 21.8 3.1E+02 0.0067 36.5 8.4 124 221-353 414-567 (1679)
322 COG1807 ArnT 4-amino-4-deoxy-L 21.8 9E+02 0.019 28.1 11.9 130 227-356 67-218 (535)
323 PRK10649 hypothetical protein; 21.8 93 0.002 37.1 4.0 47 259-305 13-60 (577)
324 PF06570 DUF1129: Protein of u 21.7 4.6E+02 0.0099 26.9 8.5 17 229-245 90-106 (206)
325 TIGR02302 aProt_lowcomp conser 21.6 2.7E+02 0.0058 35.2 7.8 28 252-279 16-43 (851)
326 PRK06459 hydrogenase 4 subunit 21.5 2.8E+02 0.006 33.5 7.8 19 346-364 94-112 (585)
327 TIGR03716 R_switched_YkoY inte 21.5 8.4E+02 0.018 25.8 10.5 21 304-324 93-113 (215)
328 PF14110 DUF4282: Domain of un 21.5 2.8E+02 0.006 25.1 6.1 7 362-368 72-78 (90)
329 COG4325 Predicted membrane pro 21.4 6E+02 0.013 29.6 9.8 18 249-266 82-99 (464)
330 PRK14873 primosome assembly pr 21.4 69 0.0015 39.0 2.8 21 612-635 412-432 (665)
331 COG1968 BacA Undecaprenyl pyro 21.3 5.5E+02 0.012 28.3 9.2 120 166-320 5-129 (270)
332 PF04216 FdhE: Protein involve 21.1 35 0.00077 36.8 0.4 30 459-490 87-116 (290)
333 KOG4050 Glutamate transporter 20.9 4.5E+02 0.0097 27.1 7.8 32 295-327 119-150 (188)
334 TIGR00797 matE putative efflux 20.8 9.9E+02 0.021 25.1 12.3 53 277-331 95-147 (342)
335 PLN03140 ABC transporter G fam 20.6 1.2E+03 0.026 31.5 13.8 17 215-231 1217-1233(1470)
336 PF12725 DUF3810: Protein of u 20.6 1.2E+03 0.025 26.0 11.9 63 441-504 83-155 (318)
337 PF05216 UNC-50: UNC-50 family 20.5 3.3E+02 0.0072 29.2 7.3 18 250-267 56-73 (231)
338 PLN03223 Polycystin cation cha 20.5 1E+03 0.022 32.1 12.4 101 212-312 1287-1419(1634)
339 PF04515 Choline_transpo: Plas 20.3 5.9E+02 0.013 27.5 9.4 18 295-312 101-118 (334)
340 PF06930 DUF1282: Protein of u 20.2 8.5E+02 0.018 24.1 10.0 24 327-355 127-150 (170)
341 TIGR00765 yihY_not_rbn YihY fa 20.2 4.4E+02 0.0095 27.8 8.2 23 293-319 230-252 (259)
342 COG4709 Predicted membrane pro 20.1 1E+03 0.022 25.1 11.5 20 208-227 74-93 (195)
343 COG3846 TrbL Type IV secretory 20.1 8.1E+02 0.018 28.9 10.7 21 211-231 185-205 (452)
344 PF10337 DUF2422: Protein of u 20.0 1.4E+03 0.029 26.4 14.1 13 454-466 290-302 (459)
No 1
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-73 Score=611.01 Aligned_cols=445 Identities=41% Similarity=0.678 Sum_probs=357.0
Q ss_pred hHHHHhhhhhhHhhhhhhhhHHHHHHH-HHHHHHHHHHHHHhhhhhhcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHH
Q 004646 190 LMTNIYNAHDYVSRKVQQVYPVALNHL-GHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFK 268 (740)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~w~~~~~rg~~~~~~~g~~~~~~~~w~~~~~~~~m~~~~~ 268 (740)
++.-.++.||.+.. +||.|+..+ +++|++.|++ .+|+||++||||+++++|++++|+||||+++|.++|.++.|
T Consensus 11 ~~~~~~k~~~~~~~----~~p~~~~~~~~~~g~~~l~~-k~~~~~~~r~~~~~~~~~~a~~~s~~~s~~~s~~s~~ql~~ 85 (490)
T KOG0720|consen 11 VKLRVYKGRDLVLT----KMPLVFSVVFMHNGSPILLL-KVWLDCAIRGFQSFIRMGTAPFFSIMWSTLVSANSMGQLTK 85 (490)
T ss_pred ecccccchhhhhhh----cCCcccchhhccccCchhHh-HhhccccccCCcchhccCCcchhheeeeeeeeccccccccc
Confidence 45566777776655 555554443 6888888888 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhhhccchhHHHHHHhhhheeeeeeeehhhH
Q 004646 269 FLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLG 348 (740)
Q Consensus 269 ~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~f~~t~~~~i~g~~~f~l~~~~~~~~~~~~y~~yc~~~~~gwlg 348 (740)
++++++++..++.|.|.++++.+++++|+++||+| +||.++.+-+- .+|+++|+ +.+.|+.|.+-.+..|++
T Consensus 86 ~~~~~~a~~~~~~~~g~~~~~~~l~~~g~~~l~l~-~~w~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~s~kt~w~ 157 (490)
T KOG0720|consen 86 FILIMVATVSVALYIGRVVGSVTLALFGLLLLWLY-SFWGTVLFSFN--LAFLSKDE-----LITVYSVYSALSYKTWWG 157 (490)
T ss_pred cccchhhhhhhheeccccCcceeeccchHHHHHHH-HhhcchhhhHH--HHHhhhhh-----eeccccceeeeccchhhh
Confidence 99999999999999999999999999999999999 99998877665 88899998 778999999999999999
Q ss_pred HHHHhhhhhhhHHHHHHHHhhhccCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 004646 349 LLLALNLSFVSSDALIFFLKSKVNQHKTDSSPEQTSGMQAGPSFSNGEPVHPAFSDNVPGLSADRSPGVPSTSGDDSEMT 428 (740)
Q Consensus 349 ~~l~~nl~flS~diL~~llq~~~~e~~~ss~~eq~~s~~~~~~~fs~eS~~~Ssses~~s~ss~~~~~~~s~~~~ds~~t 428 (740)
.++.+|++++.-+...+|.+..+..+. -. .+ .+....+..+.+.++..++..+-......+.+.+
T Consensus 158 ~~~k~l~~~i~l~f~~~f~~~~~~~~~-~~----------r~----l~~vk~~~~e~g~~tv~~~~~g~~~e~~va~n~t 222 (490)
T KOG0720|consen 158 LTLKLLRAVILLDFSIYFERNKIIQQT-AD----------RP----LEPVKDSGAEEGDETVESRDYGCKKEIPVATNAT 222 (490)
T ss_pred hcchhhhhhhhhhcceeeeeehhhHHH-Hh----------hh----cchhhhhccccCCCchhcCCcccccccccccchh
Confidence 999999999999988888885555441 00 00 0111111122222333333344444445555666
Q ss_pred c-HHHHHHHhcCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 004646 429 S-EDEVVRLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (740)
Q Consensus 429 s-e~ev~ril~~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~ 507 (740)
+ .+++.|.++..|+|.+|||++ ++|+++|||.|||+|+++|||||+ .|.|+|+|+.|+.|||+|+|++||+.||..
T Consensus 223 ~~adrl~re~~~~daYsvlGl~~--d~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 223 SFADRLSRELNILDAYSALGLPS--DCSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred hHHHhhhhhhcCCCchhhcCCCC--CCCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 6 689999999999999999998 799999999999999999999998 699999999999999999999999999998
Q ss_pred hhhhhhhhhhhhccccccCCCCccccCCCCCCCCCCCCCCCCcccccccccccccceeeeeccCcccccccccccccccc
Q 004646 508 LRREELLDYFRRFQSASQKNGRHGFFGSGYARSEADCDDPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQA 587 (740)
Q Consensus 508 ~~~ed~~d~F~~F~g~~~~~G~~gfFggGfgrsrg~~Ed~f~isR~ViC~kC~GsG~~~~t~r~~skar~C~sCk~~H~a 587 (740)
+.+++.. +.++...... .+...+ +..+.+.|++|.++|.|++|.+++.++|+|..|+++|||
T Consensus 300 ~~kene~--~~~~~~~~~~-------------~~~~~e---EA~ntI~CskC~n~H~r~~T~rs~s~AR~C~~C~~~H~A 361 (490)
T KOG0720|consen 300 LKKENEL--HRQVISSLND-------------LQKAVE---EARNTIFCSKCGNTHFRVLTSRSPSQARWCAECGVKHPA 361 (490)
T ss_pred HHHHHHH--HHHHHHHHHH-------------HHHHHH---HHHhheehhhhcCcceeeeecCChhhhHHHHHhCccCcc
Confidence 7765432 2222111100 000011 127789999999999999999999999999999999999
Q ss_pred cCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCCCCccccceeEEEEEEcccccCCCcccccC-CCCC-
Q 004646 588 KDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVNTSVTSKHNTSKGT-SSGQ- 665 (740)
Q Consensus 588 kdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~CqG~G~v~~t~~vsV~IPaGv~d~~~rikG~-g~~~- 665 (740)
|||+-|+|... ...++.+|+|+.+++||+++|++|||+++.+++|++++||.+|.. ++++ ++.+
T Consensus 362 Kdgdiw~Ek~h---------lgl~~tyy~c~DgkVYDITeWA~CQ~~~~~pntHr~~~Hi~~~~~-----~~~tq~s~~~ 427 (490)
T KOG0720|consen 362 KDGDIWAEKSH---------LGLTPTYYACMDGKVYDITEWAICQGMACSPNTHRVSYHINFGAL-----ISGTQRSRQQ 427 (490)
T ss_pred ccCCEeeeehh---------ccccceeeeecCCceEeehhhhhccccccCCCccCcchhhhhhhh-----cCcccccchh
Confidence 99999999842 223467789999999999999999999999999999999999874 4444 2222
Q ss_pred -CCCCCCCCccccCCChhHHHHHHHHHHhhccccc
Q 004646 666 -RGGRMPPPNLEETMTEDEFLEWLQNAVQAGLFDN 699 (740)
Q Consensus 666 -r~g~~pgdl~~e~m~e~eff~wlq~a~~~~~f~~ 699 (740)
..-.+|-++..+ +|+||++|+||+.+||+|++
T Consensus 428 ~~~q~~~~~~pd~--~~~~f~~~~~q~~~s~~f~~ 460 (490)
T KOG0720|consen 428 AQPQAPPADYPDE--LEREFQLPLGQAPNSGLFAA 460 (490)
T ss_pred cccccCcccCcch--hhhhhccCCccccccchhcc
Confidence 122233344444 78899999999999999999
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-48 Score=416.71 Aligned_cols=237 Identities=24% Similarity=0.366 Sum_probs=187.6
Q ss_pred cCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhh
Q 004646 438 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLDYF 517 (740)
Q Consensus 438 ~~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~ed~~d~F 517 (740)
..+|||+||||++ +||++||||||||||++||||+|+++++|+++|++|++||||||||+||+.||+++....-...|
T Consensus 2 ~~~dyYeiLGV~k--~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~ 79 (371)
T COG0484 2 AKRDYYEILGVSK--DASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGF 79 (371)
T ss_pred CccchhhhcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCc
Confidence 3579999999999 89999999999999999999999988999999999999999999999999999997643111112
Q ss_pred hhccccccCCC-----CccccCCCCC---C----CCCCC----------------CCCCCcccccccccccccceeeeec
Q 004646 518 RRFQSASQKNG-----RHGFFGSGYA---R----SEADC----------------DDPFGESRRIACKKCNNFHVWIETK 569 (740)
Q Consensus 518 ~~F~g~~~~~G-----~~gfFggGfg---r----srg~~----------------Ed~f~isR~ViC~kC~GsG~~~~t~ 569 (740)
..| +....++ +..+|+++.+ + .++.+ +..+.+++.+.|..|+|+| +
T Consensus 80 gg~-g~~~fgg~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsG-----a 153 (371)
T COG0484 80 GGF-GFGGFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSG-----A 153 (371)
T ss_pred CCC-CcCCCCCCHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCC-----C
Confidence 111 0000000 1123433221 1 12221 2456789999999999998 7
Q ss_pred cCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCCCCccccceeEEEEEEcc
Q 004646 570 KSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVNT 649 (740)
Q Consensus 570 r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~CqG~G~v~~t~~vsV~IPa 649 (740)
++++.+.+|++|+ |+|.+.+..+ + |+ ++++++|+ .|.|+|.++.++|..|+|.|++...+.++|+||+
T Consensus 154 k~gt~~~tC~tC~-------G~G~v~~~~~-~--g~-~~~~~~C~-~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPa 221 (371)
T COG0484 154 KPGTDPKTCPTCN-------GSGQVRTVQR-T--GF-FSFQQTCP-TCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPA 221 (371)
T ss_pred CCCCCCCcCCCCC-------CcCeEEEEEe-e--eE-EEEEEECC-CCccceeECCCCCCCCCCCCeEeeeeEEEEECCC
Confidence 8888999999999 9999988544 3 34 46788999 8999999999999999999999999999999999
Q ss_pred cccCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHHHHHHhh
Q 004646 650 SVTSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWLQNAVQA 694 (740)
Q Consensus 650 Gv~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wlq~a~~~ 694 (740)
||.++ ..|+.|.|+.+.+|+.||||++. .+.+|++|++.-++|..
T Consensus 222 Gv~~g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~ 268 (371)
T COG0484 222 GVDDGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYC 268 (371)
T ss_pred CCccCCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEe
Confidence 99777 44667777777778888999999 66999999998766543
No 3
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-39 Score=354.13 Aligned_cols=231 Identities=21% Similarity=0.307 Sum_probs=177.6
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhh----
Q 004646 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELL---- 514 (740)
Q Consensus 439 ~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~ed~~---- 514 (740)
.+|||+||||++ +||.+|||+|||+||++||||+|+ ++.|+++|++|++||+||+||+||+.||+++... +.
T Consensus 3 ~~dyY~~Lgv~~--~a~~~eik~ayrkla~~~HPD~n~-~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~-~~~~~~ 78 (372)
T PRK14296 3 KKDYYEVLGVSK--TASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAA-FDGSSG 78 (372)
T ss_pred CCCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-CchHHHHHHHHHHHHHHhcCHHHhhhhhhccchh-hcCCCC
Confidence 479999999999 799999999999999999999997 5889999999999999999999999999986421 00
Q ss_pred -----hhhhhccccc---cCCC----CccccCCCCC----CCCCCC----------------CCCCCccccccccccccc
Q 004646 515 -----DYFRRFQSAS---QKNG----RHGFFGSGYA----RSEADC----------------DDPFGESRRIACKKCNNF 562 (740)
Q Consensus 515 -----d~F~~F~g~~---~~~G----~~gfFggGfg----rsrg~~----------------Ed~f~isR~ViC~kC~Gs 562 (740)
..|..++... +... +..+|+++.+ +.++.+ +..+.+.+.+.|..|+|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~g~~~f~d~f~~~fggg~~~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~ 158 (372)
T PRK14296 79 FSSNFGDFEDLFSNMGSSGFSSFTNIFSDFFGSNKSDYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGS 158 (372)
T ss_pred cCcCCCccccccccccccccccchhhhhhhcCCCccCCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCC
Confidence 0011100000 0000 1223443211 112221 124567889999999999
Q ss_pred ceeeeeccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCCCCccccceeE
Q 004646 563 HVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHK 642 (740)
Q Consensus 563 G~~~~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~CqG~G~v~~t~~ 642 (740)
| ...+.....|+.|+ |+|.+.... +++| +++|++++|+ .|.|.|.+...+|..|+|.+++.+.+.
T Consensus 159 G-----~~~~~~~~~C~~C~-------G~G~~~~~~-~~g~-~~~q~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~ 223 (372)
T PRK14296 159 G-----AESNSDIHICNNCH-------GTGEVLVQK-NMGF-FQFQQSAKCN-VCNGAGKIIKNKCKNCKGKGKYLERKK 223 (372)
T ss_pred c-----cCCCCCCccCCCCC-------CCceEEEEE-eccc-eEEEEEecCC-CcCCcceeecccccCCCCceEEEEEEE
Confidence 8 56667789999999 999988754 4566 4557889999 899999999999999999999999999
Q ss_pred EEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHH
Q 004646 643 PSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWL 688 (740)
Q Consensus 643 vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wl 688 (740)
++|+||+|+.++ ..+++|.|.....++.|||+++. .+.+|++|+|.
T Consensus 224 ~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~ 271 (372)
T PRK14296 224 IEVNIPKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEII 271 (372)
T ss_pred EEEEECCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEe
Confidence 999999999888 55777777766555678999888 66889999884
No 4
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.6e-39 Score=350.75 Aligned_cols=235 Identities=23% Similarity=0.348 Sum_probs=178.9
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhh----
Q 004646 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREEL---- 513 (740)
Q Consensus 439 ~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~-p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~ed~---- 513 (740)
.+|||+||||++ +||.+|||+|||+||++||||+|+.+ +.|+++|++|++|||||+||++|+.||+++.....
T Consensus 3 ~~d~y~~lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~ 80 (369)
T PRK14282 3 KKDYYEILGVSR--NATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQ 80 (369)
T ss_pred CCChHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccc
Confidence 479999999999 79999999999999999999999864 67899999999999999999999999997642100
Q ss_pred ---------hhhhhhccccccCCCCccccCCCCC-------CCCCCC----------------CCCCCcccccccccccc
Q 004646 514 ---------LDYFRRFQSASQKNGRHGFFGSGYA-------RSEADC----------------DDPFGESRRIACKKCNN 561 (740)
Q Consensus 514 ---------~d~F~~F~g~~~~~G~~gfFggGfg-------rsrg~~----------------Ed~f~isR~ViC~kC~G 561 (740)
.++|..|.......-+..||+++.+ +.++.+ +..+.+++.+.|+.|+|
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G 160 (369)
T PRK14282 81 ETESGGGFFEDIFKDFENIFNRDIFDIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGG 160 (369)
T ss_pred cCCCCCcccccccccccccccchhhhHhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCc
Confidence 0001111000000001123432100 112221 12456788999999999
Q ss_pred cceeeeeccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCCCCcccccee
Q 004646 562 FHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTH 641 (740)
Q Consensus 562 sG~~~~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~CqG~G~v~~t~ 641 (740)
+| .........|+.|+ |+|++... +++++|++|+ +++|+ .|.|.|.+..++|..|+|.+++.+.+
T Consensus 161 ~G-----~~~~~~~~~C~~C~-------G~G~~~~~-~~~~~G~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~ 225 (369)
T PRK14282 161 TG-----VEPGSGYVTCPKCH-------GTGRIREE-RRSFFGVFVS-ERTCE-RCGGTGKIPGEYCHECGGSGRIRRRV 225 (369)
T ss_pred cC-----CCCCCCCcCCCCCC-------CcCEEEEE-EEccCcceEE-EEECC-CCCCcceeCCCCCCCCCCceeEEEEE
Confidence 98 55666788999999 99998874 4678899865 67999 89999999999999999999999999
Q ss_pred EEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHHHH
Q 004646 642 KPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWLQN 690 (740)
Q Consensus 642 ~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wlq~ 690 (740)
.++|+||+|+.++ ..+++|.|.....++.|+|+++. .+.+|++|++.-+
T Consensus 226 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~ 276 (369)
T PRK14282 226 RTTVKIPAGVEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGS 276 (369)
T ss_pred EEEEEeCCCCCCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecC
Confidence 9999999999887 45677777765556678999887 6688999987533
No 5
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1e-38 Score=346.63 Aligned_cols=230 Identities=24% Similarity=0.386 Sum_probs=175.8
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh-------
Q 004646 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE------- 511 (740)
Q Consensus 439 ~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~e------- 511 (740)
..|||+||||++ +||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||+||+.||+++...
T Consensus 3 ~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~ 80 (372)
T PRK14286 3 ERSYYDILGVSK--SANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGG 80 (372)
T ss_pred CCCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCC
Confidence 369999999999 79999999999999999999999877889999999999999999999999999986421
Q ss_pred --------------hhhhhhhhccccccCCCCccccCCCCCCCCCCC----------------CCCCCcccccccccccc
Q 004646 512 --------------ELLDYFRRFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNN 561 (740)
Q Consensus 512 --------------d~~d~F~~F~g~~~~~G~~gfFggGfgrsrg~~----------------Ed~f~isR~ViC~kC~G 561 (740)
++.++|++|+++... ++. ..+....+.++.+ +..+.+++.+.|..|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~d~f~~ffgg~~~-~~~-~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G 158 (372)
T PRK14286 81 FGQGAYTDFSDIFGDFGDIFGDFFGGGRG-GGS-GGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNG 158 (372)
T ss_pred CCCCCcccccccccchhhHHHHhhCCCcc-CCC-cccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcC
Confidence 001223333221000 000 0000001112221 23456788999999999
Q ss_pred cceeeeeccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCCCCcccccee
Q 004646 562 FHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTH 641 (740)
Q Consensus 562 sG~~~~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~CqG~G~v~~t~ 641 (740)
+| .........|+.|+ |+|++.... |++| ++++|+ .|.|.|.++..+|..|+|.+++.+.+
T Consensus 159 ~G-----~~~~~~~~~C~~C~-------G~G~v~~~~-----G~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~~~~~~ 219 (372)
T PRK14286 159 SG-----ASKGSSPTTCPDCG-------GSGQIRRTQ-----GFFS-VATTCP-TCRGKGTVISNPCKTCGGQGLQEKRR 219 (372)
T ss_pred CC-----cCCCCCCccCCCCc-------CeEEEEEEe-----ceEE-EEEeCC-CCCceeeEecccCCCCCCCcEEecce
Confidence 98 55666778999999 999887642 5665 778999 89999999999999999999999999
Q ss_pred EEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHHHHH
Q 004646 642 KPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWLQNA 691 (740)
Q Consensus 642 ~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wlq~a 691 (740)
.++|+||+|+.++ ..+++|.|....++..|||+++. .+.+|+.|.|.-++
T Consensus 220 ~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~D 271 (372)
T PRK14286 220 TINIKIPPGVETGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGND 271 (372)
T ss_pred EEEEEECCCCCCCCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCC
Confidence 9999999999888 55777777766555567999888 66889999885433
No 6
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-38 Score=344.86 Aligned_cols=231 Identities=23% Similarity=0.347 Sum_probs=179.6
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh-------
Q 004646 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE------- 511 (740)
Q Consensus 439 ~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~e------- 511 (740)
..|||+||||++ +||.+|||+|||+||++||||+|+ +++|+++|++|++|||||+||+||+.||+++...
T Consensus 3 ~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HpD~~~-~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~ 79 (371)
T PRK14287 3 KRDYYEVLGVDR--NASVDEVKKAYRKLARKYHPDVNK-APDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGG 79 (371)
T ss_pred CCCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCC
Confidence 369999999999 799999999999999999999997 4889999999999999999999999999986421
Q ss_pred -------hhhhhhhhccccccCCCCccccCCCCCCCCCCC----------------CCCCCcccccccccccccceeeee
Q 004646 512 -------ELLDYFRRFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNNFHVWIET 568 (740)
Q Consensus 512 -------d~~d~F~~F~g~~~~~G~~gfFggGfgrsrg~~----------------Ed~f~isR~ViC~kC~GsG~~~~t 568 (740)
++.++|+.|+++. + + ......+.++.+ +..+.+.+.+.|+.|+|+|
T Consensus 80 ~~~~~f~~~~d~f~~~fgg~----~-~-~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G----- 148 (371)
T PRK14287 80 GGAGDFGGFSDIFDMFFGGG----G-G-RRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSG----- 148 (371)
T ss_pred CCCccccchHHHHHhhhccc----c-C-CCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcc-----
Confidence 0112333333210 0 0 000001112221 1245678899999999998
Q ss_pred ccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCCCCccccceeEEEEEEc
Q 004646 569 KKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVN 648 (740)
Q Consensus 569 ~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~CqG~G~v~~t~~vsV~IP 648 (740)
..+......|+.|+ |+|++.+. +++++|++|+ +.+|+ .|.|.|.+...+|..|.|.+++.+.+.++|+||
T Consensus 149 ~~~~~~~~~C~~C~-------G~G~~~~~-~~~~~G~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip 218 (371)
T PRK14287 149 AKPGTKPETCSHCG-------GSGQLNVE-QNTPFGRVVN-RRVCH-HCEGTGKIIKQKCATCGGKGKVRKRKKINVKVP 218 (371)
T ss_pred cCCCCCCcccCCCC-------CEEEEEEE-EecCCceEEE-EEeCC-CCCCCCccccccCCCCCCeeEEeeeEEEEEEEC
Confidence 55666788999999 99988774 5678899875 77999 899999999999999999999999999999999
Q ss_pred ccccCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHHHHHHh
Q 004646 649 TSVTSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWLQNAVQ 693 (740)
Q Consensus 649 aGv~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wlq~a~~ 693 (740)
+|+.++ ..+++|.|.....++.|||+++. .+.+|+.|++.-++|.
T Consensus 219 ~G~~~G~~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~ 265 (371)
T PRK14287 219 AGIDHGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIY 265 (371)
T ss_pred CcCCCCCEEEEccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeE
Confidence 999888 55777877766555578999888 6688999988654443
No 7
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.1e-38 Score=343.97 Aligned_cols=226 Identities=23% Similarity=0.330 Sum_probs=169.0
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh-h--h--
Q 004646 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-E--L-- 513 (740)
Q Consensus 439 ~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~e-d--~-- 513 (740)
..|||+||||++ +||++|||||||+||++||||+|+.+++|+++|++|++|||||+||+||+.||+++... + .
T Consensus 2 ~~dyY~vLgv~~--~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~~ 79 (369)
T PRK14288 2 ELSYYEILEVEK--HSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGAS 79 (369)
T ss_pred CCChHHHcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCCC
Confidence 369999999999 79999999999999999999999877889999999999999999999999999986421 0 0
Q ss_pred hhhhhhccccccCCCCccccCCC------CCCCCCCC----------------CCCCCcccccccccccccceeeeeccC
Q 004646 514 LDYFRRFQSASQKNGRHGFFGSG------YARSEADC----------------DDPFGESRRIACKKCNNFHVWIETKKS 571 (740)
Q Consensus 514 ~d~F~~F~g~~~~~G~~gfFggG------fgrsrg~~----------------Ed~f~isR~ViC~kC~GsG~~~~t~r~ 571 (740)
...|.+|++.... -+..+|+++ .++.++.+ +..+.+++.+.|..|+|+| ...
T Consensus 80 ~~~~~~~f~~~~~-~F~~~fg~g~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G-----~~~ 153 (369)
T PRK14288 80 QSDFSDFFEDLGS-FFEDAFGFGARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTG-----AKD 153 (369)
T ss_pred ccccccchhhHHH-HHHhhcCCCCcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcc-----cCC
Confidence 0011111100000 000112211 00112221 1234568889999999998 333
Q ss_pred cccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCCCCccccceeEEEEEEcccc
Q 004646 572 KASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVNTSV 651 (740)
Q Consensus 572 ~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~CqG~G~v~~t~~vsV~IPaGv 651 (740)
.....|+.|+ |.|.+++.. |++ +++++|+ .|.|.|++...+|..|+|.|++.+.+.++|+||+|+
T Consensus 154 -~~~~~C~~C~-------G~G~~~~~~-----g~~-~~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~ 218 (369)
T PRK14288 154 -KALETCKQCN-------GQGQVFMRQ-----GFM-SFAQTCG-ACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGI 218 (369)
T ss_pred -CCCcCCCCCC-------CCcEEEEEe-----ceE-EEEEecC-CCCCCceEccccCccCCCcceEEEEEEEEEecCCCC
Confidence 3678999999 999887632 455 4566999 899999999999999999999999999999999999
Q ss_pred cCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHH
Q 004646 652 TSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWL 688 (740)
Q Consensus 652 ~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wl 688 (740)
.++ ..+++|.|....+ +.|||+++. .+.+|+.|.+.
T Consensus 219 ~~G~~i~l~g~G~~~~~-~~~GDL~v~i~v~~h~~f~R~ 256 (369)
T PRK14288 219 DDQNRMVLKNKGNEYEK-GKRGDLYLEARVKEDEHFKRE 256 (369)
T ss_pred CCCCEEEEccCccCCCC-CCCCCEEEEEEEEECCCcEEe
Confidence 888 4466777666544 568999888 56889999884
No 8
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.3e-38 Score=345.33 Aligned_cols=236 Identities=22% Similarity=0.313 Sum_probs=178.3
Q ss_pred cCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhh-h
Q 004646 438 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLD-Y 516 (740)
Q Consensus 438 ~~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~ed~~d-~ 516 (740)
+..|||+||||++ +||.+|||+|||+||++||||+|++++.|+++|++|++||+||+||.||+.||+++... ... .
T Consensus 3 ~~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~-~~~~~ 79 (386)
T PRK14277 3 AKKDYYEILGVDR--NATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAA-FDPGG 79 (386)
T ss_pred CCCCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccc-ccccc
Confidence 3479999999999 79999999999999999999999877889999999999999999999999999986421 000 0
Q ss_pred h-------hhcccc-cc--CCC----CccccCCCCC---------CCCCCC----------------CCCCCcccccccc
Q 004646 517 F-------RRFQSA-SQ--KNG----RHGFFGSGYA---------RSEADC----------------DDPFGESRRIACK 557 (740)
Q Consensus 517 F-------~~F~g~-~~--~~G----~~gfFggGfg---------rsrg~~----------------Ed~f~isR~ViC~ 557 (740)
+ ..|... .. ..+ +..+|++.++ +.++.+ +..+.+++.+.|+
T Consensus 80 ~~~~~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~fgg~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~ 159 (386)
T PRK14277 80 FGQGGFGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGTGRRRAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCD 159 (386)
T ss_pred cccCCcCCCCccccCccccccchhHHHHHhhcccccCCCcCCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCC
Confidence 0 000000 00 000 0112221110 112221 1245678899999
Q ss_pred cccccceeeeeccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCCCCccc
Q 004646 558 KCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCP 637 (740)
Q Consensus 558 kC~GsG~~~~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~CqG~G~v 637 (740)
.|+|+| .........|+.|+ |+|++... +++++|++|+. ++|+ .|.|.|..+..+|..|+|.+++
T Consensus 160 ~C~G~G-----~~~~~~~~~C~~C~-------G~G~~~~~-~~~~~G~~~~~-~~C~-~C~G~G~~~~~~C~~C~G~g~v 224 (386)
T PRK14277 160 VCKGSG-----AKPGSKPVTCPVCH-------GTGQVRTR-QNTPFGRIVNI-RTCD-RCHGEGKIITDPCNKCGGTGRI 224 (386)
T ss_pred CCCCCC-----cCCCCCCccCCCCC-------CEEEEEEE-EeccCceEEEE-EECC-CCCcceeeccCCCCCCCCCcEE
Confidence 999998 55666788999999 99988774 45778998765 6999 8999999999999999999999
Q ss_pred cceeEEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHHHHH
Q 004646 638 ANTHKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWLQNA 691 (740)
Q Consensus 638 ~~t~~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wlq~a 691 (740)
.+.+.++|+||+|+.++ ..+++|.|.....++.|||+++. .+.+|++|+|.-++
T Consensus 225 ~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~D 280 (386)
T PRK14277 225 RRRRKIKVNIPAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYN 280 (386)
T ss_pred eeeeEEEEecCCCccCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCC
Confidence 99999999999999888 44667777654445567999888 66889999985333
No 9
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.5e-38 Score=345.83 Aligned_cols=233 Identities=24% Similarity=0.389 Sum_probs=176.1
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh---hhhh-
Q 004646 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR---EELL- 514 (740)
Q Consensus 439 ~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~---ed~~- 514 (740)
.+|||+||||++ +|+.+|||+|||+||++||||+|++++.|+++|++|++||+||+||+||+.||+++.. ....
T Consensus 8 ~~Dyy~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~ 85 (392)
T PRK14279 8 EKDFYKELGVSS--DASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGG 85 (392)
T ss_pred ccCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhcccccccc
Confidence 379999999999 7999999999999999999999987889999999999999999999999999998641 0000
Q ss_pred ---------hh-----------hhhccccccC---CC----CccccCCCCC------CCCCCC----------------C
Q 004646 515 ---------DY-----------FRRFQSASQK---NG----RHGFFGSGYA------RSEADC----------------D 545 (740)
Q Consensus 515 ---------d~-----------F~~F~g~~~~---~G----~~gfFggGfg------rsrg~~----------------E 545 (740)
.. |.++++.... .+ +.++|+++.+ +.++.+ +
T Consensus 86 ~~~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~ 165 (392)
T PRK14279 86 RRFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVT 165 (392)
T ss_pred ccccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeE
Confidence 00 1111110000 00 0122332110 112221 1
Q ss_pred CCCCcccccccccccccceeeeeccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcc
Q 004646 546 DPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNA 625 (740)
Q Consensus 546 d~f~isR~ViC~kC~GsG~~~~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~ 625 (740)
..+.+++.+.|++|+|+| .........|+.|+ |+|++.... |++ +++++|+ .|.|.|+++.
T Consensus 166 ~~v~~~~~~~C~~C~G~G-----~~~~~~~~~C~~C~-------G~G~~~~~~-----g~~-~~~~~C~-~C~G~G~~i~ 226 (392)
T PRK14279 166 MPLRLTSPAPCTTCHGSG-----ARPGTSPKVCPTCN-------GSGVISRNQ-----GAF-GFSEPCT-DCRGTGSIIE 226 (392)
T ss_pred EEEeeeccccCCCCcccc-----ccCCCCCCCCCCCc-------ceEEEEEEe-----cce-EEEEecC-CCCceeEEeC
Confidence 245678899999999998 55666789999999 999887642 344 4678999 8999999999
Q ss_pred cccccCCCCccccceeEEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHHHHHH
Q 004646 626 TDWYICQGMRCPANTHKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWLQNAV 692 (740)
Q Consensus 626 teCa~CqG~G~v~~t~~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wlq~a~ 692 (740)
.+|..|.|.+++.+++.++|+||+|+.++ ..+++|.|.....++.|+|+++. .+.+|++|.+--++|
T Consensus 227 ~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL 295 (392)
T PRK14279 227 DPCEECKGTGVTTRTRTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDL 295 (392)
T ss_pred CcCCCCCCCeEEEEeeeeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcE
Confidence 99999999999999999999999999888 55777777766556667899888 568899999854443
No 10
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.6e-38 Score=342.72 Aligned_cols=231 Identities=24% Similarity=0.375 Sum_probs=176.8
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhh--hh
Q 004646 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLD--YF 517 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~ed~~d--~F 517 (740)
+|||+||||++ +||.+|||+|||+||++||||+|++++.|.++|++|++||+||+||++|+.||+++... +.. .+
T Consensus 3 ~d~y~iLgv~~--~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~-~~~~~~~ 79 (365)
T PRK14285 3 RDYYEILGLSK--GASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTA-FEGGGGF 79 (365)
T ss_pred CCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcch-hccCCCc
Confidence 69999999999 79999999999999999999999877889999999999999999999999999986421 000 00
Q ss_pred hhcccccc-----CC----CCccccCCCCC------CCCCCC----------------CCCCCcccccccccccccceee
Q 004646 518 RRFQSASQ-----KN----GRHGFFGSGYA------RSEADC----------------DDPFGESRRIACKKCNNFHVWI 566 (740)
Q Consensus 518 ~~F~g~~~-----~~----G~~gfFggGfg------rsrg~~----------------Ed~f~isR~ViC~kC~GsG~~~ 566 (740)
..|.++.. .. -+..||+++.+ +.++.+ +..+.+++.+.|..|+|+|
T Consensus 80 ~~~~~g~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G--- 156 (365)
T PRK14285 80 EGFSGGFSGFSDIFEDFGDIFDSFFTGNRGQDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKK--- 156 (365)
T ss_pred cccCCCccccccccccHHHHHHHhhcCCcCCCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcc---
Confidence 00000000 00 01123332111 112221 1245678899999999998
Q ss_pred eeccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCCCCccccceeEEEEE
Q 004646 567 ETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFH 646 (740)
Q Consensus 567 ~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~CqG~G~v~~t~~vsV~ 646 (740)
...+.....|+.|+ |+|++.. .+|++ +++++|+ .|.|.|.+...+|..|+|.|++.+++.++|+
T Consensus 157 --~~~~~~~~~C~~C~-------G~G~~~~-----~~G~~-~~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~ 220 (365)
T PRK14285 157 --SEKGTSPSICNMCN-------GSGRVMQ-----GGGFF-RVTTTCP-KCYGNGKIISNPCKSCKGKGSLKKKETIELK 220 (365)
T ss_pred --cCCCCCCccCCCcc-------CceeEEe-----cCcee-EEeeecC-CCCCcccccCCCCCCCCCCCEEeccEEEEEE
Confidence 55666788999999 9998775 24777 6789999 8999999999999999999999999999999
Q ss_pred EcccccCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHHHHHH
Q 004646 647 VNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWLQNAV 692 (740)
Q Consensus 647 IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wlq~a~ 692 (740)
||+|+.++ ..+++|.|....+++.|||+++. .+.+|++|.+-.++|
T Consensus 221 Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL 268 (365)
T PRK14285 221 IPAGIDDNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDL 268 (365)
T ss_pred ECCCCCCCCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccce
Confidence 99999888 55778888776666678999888 568888888754443
No 11
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2e-38 Score=344.92 Aligned_cols=233 Identities=25% Similarity=0.386 Sum_probs=177.1
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhh
Q 004646 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLDYFR 518 (740)
Q Consensus 439 ~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~ed~~d~F~ 518 (740)
.+|||+||||++ +||.+|||+|||+||++||||+|+ ++.|+++|++|++||+||+||+||+.||+++... ....+.
T Consensus 4 ~~d~y~iLgv~~--~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g-~~~~~~ 79 (377)
T PRK14298 4 TRDYYEILGLSK--DASVEDIKKAYRKLAMKYHPDKNK-EPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAG-IDNQYS 79 (377)
T ss_pred CCCHHHhhCCCC--CCCHHHHHHHHHHHHHHhCccccC-ChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccc-cccccC
Confidence 369999999999 799999999999999999999997 4889999999999999999999999999986421 100000
Q ss_pred --hccccccCCC----CccccCCCC-----CCCCCCC----------------CCCCCcccccccccccccceeeeeccC
Q 004646 519 --RFQSASQKNG----RHGFFGSGY-----ARSEADC----------------DDPFGESRRIACKKCNNFHVWIETKKS 571 (740)
Q Consensus 519 --~F~g~~~~~G----~~gfFggGf-----grsrg~~----------------Ed~f~isR~ViC~kC~GsG~~~~t~r~ 571 (740)
..++..+..+ +..+|+++. ++.++.+ +..+.+++.+.|..|+|+| ..+
T Consensus 80 ~~~~~~~~~~~~~~d~f~~~Fgg~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G-----~~~ 154 (377)
T PRK14298 80 AEDIFRGADFGGFGDIFEMFFGGGGRRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTG-----AKP 154 (377)
T ss_pred cccccccCCcCcchhhhHhhhcCCCccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCc-----ccC
Confidence 0000000000 112333211 1112221 1245678899999999998 566
Q ss_pred cccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCCCCccccceeEEEEEEcccc
Q 004646 572 KASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVNTSV 651 (740)
Q Consensus 572 ~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~CqG~G~v~~t~~vsV~IPaGv 651 (740)
+.....|+.|+ |+|.+....+ +.+|+ ++++++|+ .|.|.|+.+..+|..|+|.|++.+++.++|+||+|+
T Consensus 155 ~~~~~~C~~C~-------G~G~~~~~~~-~~~g~-~~~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~ 224 (377)
T PRK14298 155 GTSPKRCPTCG-------GTGQVTTTRS-TPLGQ-FVTTTTCS-TCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGA 224 (377)
T ss_pred CCCCCcCCCCC-------CccEEEEEEe-cCcee-EEEEEeCC-CCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCC
Confidence 67788999999 9999887554 44444 57899999 899999999999999999999999999999999999
Q ss_pred cCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHHHH
Q 004646 652 TSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWLQN 690 (740)
Q Consensus 652 ~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wlq~ 690 (740)
.++ ..+++|.|.....++.|||+++. .+.+|+.|+|.-+
T Consensus 225 ~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~ 265 (377)
T PRK14298 225 DSGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGD 265 (377)
T ss_pred CCCCEEEEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcC
Confidence 888 45677777765556678999888 6688999998533
No 12
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.9e-38 Score=342.73 Aligned_cols=219 Identities=26% Similarity=0.358 Sum_probs=176.7
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh-------
Q 004646 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREE------- 512 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~ed------- 512 (740)
+|||+||||++ +||.+|||+|||+||++||||+|+ +++|+++|++|++|||||+||++|+.||+++....
T Consensus 3 ~d~y~iLgv~~--~a~~~eik~ayr~la~~~hpD~~~-~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~ 79 (378)
T PRK14278 3 RDYYGLLGVSR--NASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGG 79 (378)
T ss_pred CCcceecCCCC--CCCHHHHHHHHHHHHHHHCCCCCC-cHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCC
Confidence 69999999999 799999999999999999999998 58899999999999999999999999999764200
Q ss_pred --------hhhhhhhccccccCCCCccccCCCC-------CCCCCCC----------------CCCCCcccccccccccc
Q 004646 513 --------LLDYFRRFQSASQKNGRHGFFGSGY-------ARSEADC----------------DDPFGESRRIACKKCNN 561 (740)
Q Consensus 513 --------~~d~F~~F~g~~~~~G~~gfFggGf-------grsrg~~----------------Ed~f~isR~ViC~kC~G 561 (740)
+.++|+.| |+++. .+.++.+ +..+.+++.+.|+.|+|
T Consensus 80 g~~~~f~~~~d~f~~f------------fgg~g~~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G 147 (378)
T PRK14278 80 GFGGGFGGLGDVFEAF------------FGGGAASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHG 147 (378)
T ss_pred CCCcCcCchhHHHHHH------------hCCCCCCCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcC
Confidence 01222222 33210 0112221 12456788999999999
Q ss_pred cceeeeeccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCCCCcccccee
Q 004646 562 FHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTH 641 (740)
Q Consensus 562 sG~~~~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~CqG~G~v~~t~ 641 (740)
+| ...+.....|+.|+ |+|.+.... +.++|++|+ +++|+ .|.|.|.+...+|..|.|.|++.+++
T Consensus 148 ~G-----~~~~~~~~~C~~C~-------G~G~~~~~~-~~~~g~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~ 212 (378)
T PRK14278 148 KG-----TAGDSKPVTCDTCG-------GRGEVQTVQ-RSFLGQVMT-SRPCP-TCRGVGEVIPDPCHECAGDGRVRARR 212 (378)
T ss_pred cc-----CCCCCCceecCCcc-------CceEEEEEE-eccceeEEE-EEECC-CCCccceeeCCCCCCCCCceeEecce
Confidence 98 56667788999999 999988754 467788864 66999 89999999999999999999999999
Q ss_pred EEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHH
Q 004646 642 KPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWL 688 (740)
Q Consensus 642 ~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wl 688 (740)
.++|+||+|+.++ ..+++|.|....+++.|||+++. .+.+|+.|++.
T Consensus 213 ~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~ 261 (378)
T PRK14278 213 EITVKIPAGVGDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRD 261 (378)
T ss_pred EEEEEECCCCCCCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEc
Confidence 9999999999888 55777777766666678999888 66889999885
No 13
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.9e-38 Score=343.88 Aligned_cols=236 Identities=25% Similarity=0.381 Sum_probs=180.0
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhh--
Q 004646 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLDY-- 516 (740)
Q Consensus 439 ~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~ed~~d~-- 516 (740)
..|||+||||++ +||.+|||+|||+||++||||+|+ ++.|+++|++|++||+||+||+||+.||+++... +...
T Consensus 3 ~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~-~~~~~~ 78 (380)
T PRK14276 3 NTEYYDRLGVSK--DASQDEIKKAYRKLSKKYHPDINK-EPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAG-ANGGFG 78 (380)
T ss_pred CCCHHHhhCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcc-ccCCCC
Confidence 369999999999 799999999999999999999997 4789999999999999999999999999986421 0000
Q ss_pred -----hhhccccccCCC----CccccCCCCC------CCCCCC----------------CCCCCccccccccccccccee
Q 004646 517 -----FRRFQSASQKNG----RHGFFGSGYA------RSEADC----------------DDPFGESRRIACKKCNNFHVW 565 (740)
Q Consensus 517 -----F~~F~g~~~~~G----~~gfFggGfg------rsrg~~----------------Ed~f~isR~ViC~kC~GsG~~ 565 (740)
+..|........ +..+|+++.+ +.++.+ +..+.+.+.+.|+.|+|+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G-- 156 (380)
T PRK14276 79 GGAGGFGGFDGSGGFGGFEDIFSSFFGGGGARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSG-- 156 (380)
T ss_pred CCCCCCCCccccccccchhhHHHHHhCccccccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcc--
Confidence 000000000000 1123332110 112221 1245678899999999998
Q ss_pred eeeccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCCCCccccceeEEEE
Q 004646 566 IETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSF 645 (740)
Q Consensus 566 ~~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~CqG~G~v~~t~~vsV 645 (740)
...+.....|+.|+ |+|.+.+. +++.+|++|+ +++|+ .|.|.|++...+|..|+|.|++.+++.++|
T Consensus 157 ---~~~~~~~~~C~~C~-------G~G~~~~~-~~~~~G~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V 223 (380)
T PRK14276 157 ---AKPGTSPVTCGKCH-------GSGVITVD-TQTPLGMMRR-QVTCD-VCHGTGKEIKEPCQTCHGTGHEKQAHTVSV 223 (380)
T ss_pred ---cCCCCCCccCCCCC-------CeeEEEEE-EecCCceEEE-EEECC-CCCCCCccccCCCCCCCCceEEEEEEEEEE
Confidence 55666788999999 99998874 5677899875 77999 899999999999999999999999999999
Q ss_pred EEcccccCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHHHHHHh
Q 004646 646 HVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWLQNAVQ 693 (740)
Q Consensus 646 ~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wlq~a~~ 693 (740)
+||+|+.++ ..+++|.|....++..|||+++. .+.+|++|.|.-++|.
T Consensus 224 ~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~ 273 (380)
T PRK14276 224 KIPAGVETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIY 273 (380)
T ss_pred EeCCCccCCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEE
Confidence 999999888 55777777766555567999888 6689999998654443
No 14
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.2e-38 Score=343.78 Aligned_cols=232 Identities=24% Similarity=0.380 Sum_probs=176.8
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh--hh----
Q 004646 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE--EL---- 513 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~e--d~---- 513 (740)
.|||+||||++ +||.+|||+|||+||++||||+|++++.|+++|++|++||+||+||+||+.||+++... +.
T Consensus 1 ~d~y~iLgv~~--~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~ 78 (391)
T PRK14284 1 MDYYTILGVSK--TASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGF 78 (391)
T ss_pred CCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCc
Confidence 38999999999 79999999999999999999999887889999999999999999999999999986421 00
Q ss_pred -hhhh----------hhcccccc---CCCCccccCC-C--CC-------CCCCCC----------------CCCCCcccc
Q 004646 514 -LDYF----------RRFQSASQ---KNGRHGFFGS-G--YA-------RSEADC----------------DDPFGESRR 553 (740)
Q Consensus 514 -~d~F----------~~F~g~~~---~~G~~gfFgg-G--fg-------rsrg~~----------------Ed~f~isR~ 553 (740)
...| ..+++... ..-+..+|++ + ++ +.++.+ +..+.+++.
T Consensus 79 ~~~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~ 158 (391)
T PRK14284 79 GGAGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGY 158 (391)
T ss_pred CCCCcCcccchhhhccccccccccccccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeee
Confidence 0001 01010000 0001112332 1 11 111211 124566889
Q ss_pred cccccccccceeeeeccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCCC
Q 004646 554 IACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQG 633 (740)
Q Consensus 554 ViC~kC~GsG~~~~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~CqG 633 (740)
+.|+.|+|+| ..++.....|+.|+ |+|.+.+.. |++| ++++|+ .|.|.|.+...+|..|.|
T Consensus 159 ~~C~~C~G~G-----~~~~~~~~~C~~C~-------G~G~v~~~~-----G~~~-~~~~C~-~C~G~G~~~~~~C~~C~G 219 (391)
T PRK14284 159 KSCDACSGSG-----ANSSQGIKVCDRCK-------GSGQVVQSR-----GFFS-MASTCP-ECGGEGRVITDPCSVCRG 219 (391)
T ss_pred ccCCCCcccc-----cCCCCCCeecCccC-------CeeEEEEEe-----ceEE-EEEECC-CCCCCCcccCCcCCCCCC
Confidence 9999999998 56667789999999 999887632 5654 778999 899999999999999999
Q ss_pred CccccceeEEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHHHHHH
Q 004646 634 MRCPANTHKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWLQNAV 692 (740)
Q Consensus 634 ~G~v~~t~~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wlq~a~ 692 (740)
.+++.+++.++|+||+|+.++ ..+++|.|+.+.+++.|||+++. .+.+|++|.|.-++|
T Consensus 220 ~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL 280 (391)
T PRK14284 220 QGRIKDKRSVHVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDL 280 (391)
T ss_pred cceecceEEEEEEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCE
Confidence 999999999999999999888 55777777777666788999888 668999999864443
No 15
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=6.7e-38 Score=345.03 Aligned_cols=217 Identities=22% Similarity=0.335 Sum_probs=169.1
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh--------
Q 004646 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-------- 511 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~e-------- 511 (740)
+|||+||||++ +||.+|||||||+||++||||+|++ .++|++|++||+||+||+||+.||+++...
T Consensus 28 ~d~Y~vLGV~~--~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~~~~ 101 (421)
T PTZ00037 28 EKLYEVLNLSK--DCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGEQPA 101 (421)
T ss_pred hhHHHHcCCCC--CCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCCCCc
Confidence 69999999999 7999999999999999999999952 489999999999999999999999986421
Q ss_pred hhhhhhhhccccccCCCCccccCCCCCCCCCCC----------------CCCCCcccccccccccccceeeeeccCcccc
Q 004646 512 ELLDYFRRFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNNFHVWIETKKSKASA 575 (740)
Q Consensus 512 d~~d~F~~F~g~~~~~G~~gfFggGfgrsrg~~----------------Ed~f~isR~ViC~kC~GsG~~~~t~r~~ska 575 (740)
+..++|..|+++. +...++.++.+ +..+.+.+.+.|+.|+|+| . .....
T Consensus 102 d~~d~f~~~Fggg---------~~~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G-----~-~~~~~ 166 (421)
T PTZ00037 102 DASDLFDLIFGGG---------RKPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHG-----G-PKDAF 166 (421)
T ss_pred chhhhHHHhhccc---------cccccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCC-----C-CCCCC
Confidence 1223444443210 00001112221 2345678899999999998 3 33467
Q ss_pred cccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcc--cccccCCCCccccceeEEEEEEcccccC
Q 004646 576 RWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNA--TDWYICQGMRCPANTHKPSFHVNTSVTS 653 (740)
Q Consensus 576 r~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~--teCa~CqG~G~v~~t~~vsV~IPaGv~d 653 (740)
..|+.|+ |.|++.... ++++ |+|+++++|+ .|.|.|.+.. ++|..|+|.|++...+.++|+||+|+.+
T Consensus 167 ~~C~~C~-------G~G~~~~~~-~~g~-~~~q~~~~C~-~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~d 236 (421)
T PTZ00037 167 VDCKLCN-------GQGIRVQIR-QMGS-MIHQTQSTCN-SCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPN 236 (421)
T ss_pred ccCCCCC-------CCCeEEEEE-eecc-eeeEEEEeCC-CCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCC
Confidence 8999999 999876643 4455 7889999999 8999998764 8899999999999999999999999988
Q ss_pred C-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHH
Q 004646 654 K-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWL 688 (740)
Q Consensus 654 ~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wl 688 (740)
+ ..+++|.|+... ++.|||+++. .+.+|++|+|-
T Consensus 237 G~~I~~~G~Gd~~~-~~~pGDLiv~I~~~ph~~F~R~ 272 (421)
T PTZ00037 237 QHKITFHGEADEKP-NEIPGNVVFILNEKPHDTFKRE 272 (421)
T ss_pred CcEEEEecccCCCC-CCCCCcEEEEEEecCCCCcEEe
Confidence 7 446666666544 4578999887 66889999984
No 16
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-37 Score=339.32 Aligned_cols=221 Identities=25% Similarity=0.425 Sum_probs=175.9
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh------
Q 004646 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREE------ 512 (740)
Q Consensus 439 ~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~ed------ 512 (740)
..|||+||||++ +||.+|||+|||+||++||||+|+.++.|+++|++|++||+||+||.+|+.||+++...-
T Consensus 3 ~~d~y~~Lgv~~--~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~ 80 (380)
T PRK14297 3 SKDYYEVLGLEK--GASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGF 80 (380)
T ss_pred CCChHHhhCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCC
Confidence 369999999999 799999999999999999999998778899999999999999999999999999864210
Q ss_pred ---------------hhhhhhhccccccCCCCccccCCCC--------CCCCCCC----------------CCCCCcccc
Q 004646 513 ---------------LLDYFRRFQSASQKNGRHGFFGSGY--------ARSEADC----------------DDPFGESRR 553 (740)
Q Consensus 513 ---------------~~d~F~~F~g~~~~~G~~gfFggGf--------grsrg~~----------------Ed~f~isR~ 553 (740)
+.++|++ ||++++ .+.++.+ +..+.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~d~f~~------------~fgg~~g~~~~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~ 148 (380)
T PRK14297 81 GSGGFGGFDFSDMGGFGDIFDS------------FFGGGFGSSSRRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRN 148 (380)
T ss_pred CCCCCCCcCcccccchhHHHHH------------HhccCccccccccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeee
Confidence 0012222 233211 0112221 124567889
Q ss_pred cccccccccceeeeeccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCCC
Q 004646 554 IACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQG 633 (740)
Q Consensus 554 ViC~kC~GsG~~~~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~CqG 633 (740)
+.|+.|+|+| ..++.....|+.|+ |.|.+.+. +++.+|++| ++++|+ .|.|.|.+...+|..|+|
T Consensus 149 ~~C~~C~G~G-----~~~~~~~~~C~~C~-------G~G~~~~~-~~~~~G~~~-~~~~C~-~C~G~G~~~~~~C~~C~G 213 (380)
T PRK14297 149 ENCETCNGTG-----AKPGTSPKTCDKCG-------GTGQIRVQ-RNTPLGSFV-STTTCD-KCGGSGKVIEDPCNKCHG 213 (380)
T ss_pred ccCCCccccc-----ccCCCcCccCCCcc-------CeEEEEEE-EEcCCceeE-EEEeCC-CCCCCceEcCCCCCCCCC
Confidence 9999999998 45666688999999 99988774 456778765 588999 899999999999999999
Q ss_pred CccccceeEEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHH
Q 004646 634 MRCPANTHKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWL 688 (740)
Q Consensus 634 ~G~v~~t~~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wl 688 (740)
.|++.+.+.++|+||+|+.++ ..+++|.|.....++.|+|+++. .+.+|+.|.|.
T Consensus 214 ~g~v~~~~~i~V~Ip~G~~~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~ 270 (380)
T PRK14297 214 KGKVRKNRKIKVNVPAGVDTGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRK 270 (380)
T ss_pred CeEEEeEeEEEEEeCCCCCCCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEe
Confidence 999999999999999999887 45667777665556678999887 66888888764
No 17
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1e-37 Score=339.25 Aligned_cols=231 Identities=25% Similarity=0.333 Sum_probs=176.8
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhh
Q 004646 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLDYFR 518 (740)
Q Consensus 439 ~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~ed~~d~F~ 518 (740)
..|||+||||++ +||.+|||+|||+||++||||+|+ ++.|+++|++|++||+||+||.+|+.||+++... +...+.
T Consensus 3 ~~~~y~iLgv~~--~a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~-~~~~~~ 78 (376)
T PRK14280 3 KRDYYEVLGVSK--SASKDEIKKAYRKLSKKYHPDINK-EEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAG-PNQGFG 78 (376)
T ss_pred CCChHHhhCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhccHhHHHHHHhcCccc-cccCcC
Confidence 369999999999 799999999999999999999997 4789999999999999999999999999986421 000000
Q ss_pred -------hccccccC-CCCccccCCCC------CCCCCCC----------------CCCCCcccccccccccccceeeee
Q 004646 519 -------RFQSASQK-NGRHGFFGSGY------ARSEADC----------------DDPFGESRRIACKKCNNFHVWIET 568 (740)
Q Consensus 519 -------~F~g~~~~-~G~~gfFggGf------grsrg~~----------------Ed~f~isR~ViC~kC~GsG~~~~t 568 (740)
.|.++... .-+..||+++. .+.++.+ +..+.+++.+.|+.|+|+|
T Consensus 79 ~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G----- 153 (376)
T PRK14280 79 GGGFGGGDFGGGFGFEDIFSSFFGGGGRRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSG----- 153 (376)
T ss_pred CCCCCCCCccccccchhhHHHHhCCccccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcc-----
Confidence 00000000 00111333211 0112221 2345678899999999998
Q ss_pred ccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCCCCccccceeEEEEEEc
Q 004646 569 KKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVN 648 (740)
Q Consensus 569 ~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~CqG~G~v~~t~~vsV~IP 648 (740)
...+.....|+.|+ |+|.+... +.+.+|++| ++++|+ .|.|.|.....+|..|.|.|++.+.+.++|.||
T Consensus 154 ~~~~~~~~~C~~C~-------G~G~~~~~-~~~~~g~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip 223 (376)
T PRK14280 154 AKPGTSKETCSHCG-------GSGQVSVE-QNTPFGRVV-NRQTCP-HCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIP 223 (376)
T ss_pred cCCCCCCccCCCCC-------CEEEEEEE-eecCCceEE-EEEEcC-CCCCCCceecCCCCCCCCceEEEEEEEEEEEeC
Confidence 55666788999999 99988774 456788886 577999 899999999999999999999999999999999
Q ss_pred ccccCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHH
Q 004646 649 TSVTSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWL 688 (740)
Q Consensus 649 aGv~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wl 688 (740)
+|+.++ ..+++|.|.....++.|||+++. .+.+|+.|.|.
T Consensus 224 ~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~ 265 (376)
T PRK14280 224 AGVDNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERD 265 (376)
T ss_pred CCCcCCcEEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEe
Confidence 999888 45677777766555677999888 66899999985
No 18
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.6e-37 Score=334.92 Aligned_cols=226 Identities=27% Similarity=0.386 Sum_probs=173.7
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh---h---
Q 004646 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE---E--- 512 (740)
Q Consensus 439 ~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~e---d--- 512 (740)
.+|||+||||++ +||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||.+|+.||+++... .
T Consensus 3 ~~d~y~~lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~ 80 (366)
T PRK14294 3 KRDYYEILGVTR--DASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFS 80 (366)
T ss_pred CCChHHHhCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCC
Confidence 479999999999 79999999999999999999999877889999999999999999999999999986421 0
Q ss_pred -----------hhhhhhhccccccCCCCccccCCCCCCCCCCC----------------CCCCCccccccccccccccee
Q 004646 513 -----------LLDYFRRFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNNFHVW 565 (740)
Q Consensus 513 -----------~~d~F~~F~g~~~~~G~~gfFggGfgrsrg~~----------------Ed~f~isR~ViC~kC~GsG~~ 565 (740)
+.++|.+|++. ++..+. .....+.++.+ +..+.+++.+.|..|+|+|
T Consensus 81 ~~~~~~~~~~~~~d~f~~~fg~---g~~~~~-~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G-- 154 (366)
T PRK14294 81 GFSGFDDIFSSFGDIFEDFFGF---GGGRRG-RSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSG-- 154 (366)
T ss_pred CcCccccchhhhhhhHHHhhcc---CCCcCC-cccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCcc--
Confidence 01122222210 000000 00001112221 1245678899999999998
Q ss_pred eeeccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCCCCccccceeEEEE
Q 004646 566 IETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSF 645 (740)
Q Consensus 566 ~~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~CqG~G~v~~t~~vsV 645 (740)
.........|+.|+ |.|.+.... |++| ++++|+ .|.|.|+....+|..|.|.+++.+++.++|
T Consensus 155 ---~~~~~~~~~C~~C~-------G~G~~~~~~-----G~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V 217 (366)
T PRK14294 155 ---CEPGTSPTTCPQCG-------GSGQVTQSQ-----GFFS-IRTTCP-RCRGMGKVIVSPCKTCHGQGRVRVSKTVQV 217 (366)
T ss_pred ---ccCCCCcccCCCcC-------CeEEEEEEe-----eeEE-EEeeCC-CCCCcCeecCcCCCCCCCceEeecceeEEE
Confidence 45566678999999 999887532 6665 789999 899999999999999999999999999999
Q ss_pred EEcccccCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHHH
Q 004646 646 HVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWLQ 689 (740)
Q Consensus 646 ~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wlq 689 (740)
+||+|+.++ ..+++|.|.....++.|+|+++. .+.+|++|.+--
T Consensus 218 ~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G 263 (366)
T PRK14294 218 KIPAGVDTGSRLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDG 263 (366)
T ss_pred ecCCCCcCCcEEEEccCccCCCCCCCCCcEEEEEEEccCCcceecC
Confidence 999999888 45777777765455678999887 568999999853
No 19
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.4e-37 Score=338.46 Aligned_cols=231 Identities=27% Similarity=0.436 Sum_probs=177.0
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh--------
Q 004646 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-------- 511 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~e-------- 511 (740)
.|||+||||++ +|+.+|||+|||+||++||||++++++.|+++|++|++||+||+||.+|+.||+++...
T Consensus 3 ~d~y~iLgv~~--~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~ 80 (397)
T PRK14281 3 RDYYEVLGVSR--SADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASG 80 (397)
T ss_pred CChhhhcCCCC--CCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccC
Confidence 69999999999 79999999999999999999999877889999999999999999999999999976421
Q ss_pred ----------hhhhhh---hhccccccCCC------CccccCCC-CCC-----CCCCC----------------CCCCCc
Q 004646 512 ----------ELLDYF---RRFQSASQKNG------RHGFFGSG-YAR-----SEADC----------------DDPFGE 550 (740)
Q Consensus 512 ----------d~~d~F---~~F~g~~~~~G------~~gfFggG-fgr-----srg~~----------------Ed~f~i 550 (740)
+..++| ++|+++....+ +.+.|+++ ... .++.+ +..+.+
T Consensus 81 ~~~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~ 160 (397)
T PRK14281 81 GGPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKI 160 (397)
T ss_pred CCCCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEE
Confidence 011222 23333210000 00011111 000 11221 124567
Q ss_pred ccccccccccccceeeeeccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEccccccc
Q 004646 551 SRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYI 630 (740)
Q Consensus 551 sR~ViC~kC~GsG~~~~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~ 630 (740)
++.+.|..|+|+| .... ....|+.|+ |.|.+++. +++++|++|+ +++|+ .|.|.|.++..+|..
T Consensus 161 ~r~~~C~~C~G~G-----~~~~-~~~~C~~C~-------G~G~~~~~-~~~~~g~~~~-~~~C~-~C~G~G~~~~~~C~~ 224 (397)
T PRK14281 161 KKQVPCKECNGTG-----SKTG-ATETCPTCH-------GSGEVRQA-SKTMFGQFVN-ITACP-TCGGEGRVVKDRCPA 224 (397)
T ss_pred EeeecCCCCCCcc-----cCCC-CCccCCCCC-------CCcEEEEE-EecccceEEE-EEecC-CCcceeeeeCCCCCC
Confidence 8899999999998 3343 678999999 99988774 4567788765 67999 899999999999999
Q ss_pred CCCCccccceeEEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHH
Q 004646 631 CQGMRCPANTHKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWL 688 (740)
Q Consensus 631 CqG~G~v~~t~~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wl 688 (740)
|.|.+++..++.++|+||+|+.++ ..+++|.|.....++.|||+++. .+.+|++|.+.
T Consensus 225 C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~ 284 (397)
T PRK14281 225 CYGEGIKQGEVTVKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRN 284 (397)
T ss_pred CCCCccEecceEEEEecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEe
Confidence 999999999999999999999888 55777887776556678999888 56889999884
No 20
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.6e-37 Score=335.80 Aligned_cols=232 Identities=27% Similarity=0.410 Sum_probs=174.5
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh-hhhhhh
Q 004646 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-ELLDYF 517 (740)
Q Consensus 439 ~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~e-d~~d~F 517 (740)
..|||+||||++ +||.+|||+|||+||++||||+|+++++|+++|++|++||+||+||.+|+.||+++... +....+
T Consensus 3 ~~~~y~~Lgv~~--~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~ 80 (373)
T PRK14301 3 QRDYYEVLGVSR--DASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGF 80 (373)
T ss_pred CCChHHhcCCCC--CCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCC
Confidence 369999999999 79999999999999999999999877889999999999999999999999999986421 000000
Q ss_pred hhcccccc-CCC----CccccCC-C------CCCCCCCC----------------CCCCCcccccccccccccceeeeec
Q 004646 518 RRFQSASQ-KNG----RHGFFGS-G------YARSEADC----------------DDPFGESRRIACKKCNNFHVWIETK 569 (740)
Q Consensus 518 ~~F~g~~~-~~G----~~gfFgg-G------fgrsrg~~----------------Ed~f~isR~ViC~kC~GsG~~~~t~ 569 (740)
..|.+... ... +..+|+. + .++.++.+ +..+.+++.+.|..|+|+| .
T Consensus 81 ~g~~~~~~~~~~f~d~f~~~fg~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G-----~ 155 (373)
T PRK14301 81 GGFSSAEDIFSHFSDIFGDLFGFSGGGSRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSG-----A 155 (373)
T ss_pred CCcccccccccchHHHHHHHhhccCcccccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcc-----c
Confidence 00000000 000 0111220 0 01112221 2245678899999999998 5
Q ss_pred cCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCCCCccccceeEEEEEEcc
Q 004646 570 KSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVNT 649 (740)
Q Consensus 570 r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~CqG~G~v~~t~~vsV~IPa 649 (740)
........|+.|+ |+|.+.... |++| ++++|+ .|.|.|.+...+|..|+|.+++.+++.++|+||+
T Consensus 156 ~~~~~~~~C~~C~-------G~G~v~~~~-----G~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~ 221 (373)
T PRK14301 156 APGTSPETCRHCG-------GSGQVRQSQ-----GFFQ-IAVPCP-VCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPA 221 (373)
T ss_pred CCCCCCcccCCcc-------CeeEEEEEe-----eeEE-EEEeCC-CCCceeeecCCCCCCCCCCceeccceEEEEEeCC
Confidence 5666778999999 999887631 5654 589999 8999999999999999999999999999999999
Q ss_pred cccCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHHHHH
Q 004646 650 SVTSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWLQNA 691 (740)
Q Consensus 650 Gv~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wlq~a 691 (740)
|+.++ ..+++|.|.....++.|||+++. .+.+|++|.|.-++
T Consensus 222 G~~~G~~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~D 265 (373)
T PRK14301 222 GVDTGSRLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQD 265 (373)
T ss_pred CCcCCCEEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCc
Confidence 99888 55778887765555668999888 66888899985433
No 21
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.1e-37 Score=334.37 Aligned_cols=223 Identities=23% Similarity=0.365 Sum_probs=171.4
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh--------
Q 004646 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-------- 511 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~e-------- 511 (740)
+|||+||||++ +|+.+|||+|||+||++||||+|++ +.|+++|++|++||+||+||.+|+.||+++...
T Consensus 3 ~d~Y~~Lgv~~--~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~ 79 (382)
T PRK14291 3 KDYYEILGVSR--NATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQ 79 (382)
T ss_pred CCHHHhhCCCC--CCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCcc
Confidence 69999999999 7999999999999999999999974 889999999999999999999999999976421
Q ss_pred ------------hhhhhhhhccccccCCCCccccCCCC---C-------CCCCCC----------------CCCCCcccc
Q 004646 512 ------------ELLDYFRRFQSASQKNGRHGFFGSGY---A-------RSEADC----------------DDPFGESRR 553 (740)
Q Consensus 512 ------------d~~d~F~~F~g~~~~~G~~gfFggGf---g-------rsrg~~----------------Ed~f~isR~ 553 (740)
++.++|.+|++.. ++.++|++.. + +.++.+ ...+.+++.
T Consensus 80 ~~~~~~~~~~~~~~~d~f~~~f~~f---g~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~ 156 (382)
T PRK14291 80 QGQEGFSDFGGGNIEDILEDVFDIF---GFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRY 156 (382)
T ss_pred ccccccccccCCCHHHHHHHHHHhc---cccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeee
Confidence 0112233222110 0011122100 0 111211 124467889
Q ss_pred cccccccccceeeeeccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCCC
Q 004646 554 IACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQG 633 (740)
Q Consensus 554 ViC~kC~GsG~~~~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~CqG 633 (740)
+.|..|+|+| .........|+.|+ |.|++... + |+ ++++++|+ .|.|.|+ ...+|..|+|
T Consensus 157 ~~C~~C~G~G-----~~~~~~~~~C~~C~-------G~G~~~~~-~----g~-~~~~~~C~-~C~G~G~-~~~~C~~C~G 216 (382)
T PRK14291 157 VPCEACGGTG-----YDPGSGEKVCPTCG-------GSGEIYQR-G----GF-FRISQTCP-TCGGEGV-LREPCSKCNG 216 (382)
T ss_pred ccCCCCcccc-----CCCCCCCccCCCCC-------CceEEEEe-c----ce-EEEEecCC-CCCCceE-EccCCCCCCC
Confidence 9999999998 56667788999999 99988764 1 33 46788999 8999995 5788999999
Q ss_pred CccccceeEEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHH
Q 004646 634 MRCPANTHKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWL 688 (740)
Q Consensus 634 ~G~v~~t~~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wl 688 (740)
.|++.+++.++|+||+|+.++ ..+++|.|+.+..++.|+|+++. .+.+|++|.+.
T Consensus 217 ~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~ 273 (382)
T PRK14291 217 RGLVIKKETIKVRIPPGVDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERR 273 (382)
T ss_pred CceEEeeeEEEEEeCCCCCCCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeee
Confidence 999999999999999999888 45677777766666789999888 66889999984
No 22
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.3e-37 Score=334.45 Aligned_cols=232 Identities=25% Similarity=0.405 Sum_probs=174.1
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhh----hhhhh-h-
Q 004646 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDD----ELRRE-E- 512 (740)
Q Consensus 439 ~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~----~~~~e-d- 512 (740)
..|||+||||++ +||.+|||+|||+||++||||+|+.++.|+++|++|++||+||+||++|+.||+ ++... .
T Consensus 8 ~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~ 85 (389)
T PRK14295 8 EKDYYKVLGVPK--DATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRP 85 (389)
T ss_pred ccCHHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccccccc
Confidence 369999999999 799999999999999999999998778899999999999999999999999998 54310 0
Q ss_pred -------------hhhhhhhccccccCCC--------CccccCCCCC---CCCCCC----------------CCCCCccc
Q 004646 513 -------------LLDYFRRFQSASQKNG--------RHGFFGSGYA---RSEADC----------------DDPFGESR 552 (740)
Q Consensus 513 -------------~~d~F~~F~g~~~~~G--------~~gfFggGfg---rsrg~~----------------Ed~f~isR 552 (740)
..++|..++...+..+ +.++|+++.. +.++.+ +..+.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~r 165 (389)
T PRK14295 86 GPGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESEVTLSFTEAIDGATVPLRLTS 165 (389)
T ss_pred CCCCCCCCCCCcccccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCEEEEEEEEHHHHhCCceEEEEeec
Confidence 0011111100000000 1122332111 112221 23456788
Q ss_pred ccccccccccceeeeeccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCC
Q 004646 553 RIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQ 632 (740)
Q Consensus 553 ~ViC~kC~GsG~~~~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~Cq 632 (740)
.+.|+.|+|+| .........|+.|+ |+|++.... |++| ++++|+ .|.|.|.++..+|..|.
T Consensus 166 ~~~C~~C~G~G-----~~~~~~~~~C~~C~-------G~G~~~~~~-----g~~~-~~~~C~-~C~G~G~~~~~~C~~C~ 226 (389)
T PRK14295 166 QAPCPACSGTG-----AKNGTTPRVCPTCS-------GTGQVSRNS-----GGFS-LSEPCP-DCKGRGLIADDPCLVCK 226 (389)
T ss_pred cccCCCCcccc-----cCCCCCCcCCCCCC-------CEeEEEEEe-----cceE-EEEecC-CCcceeEEeccCCCCCC
Confidence 99999999998 56666789999999 999887742 3443 677999 89999999999999999
Q ss_pred CCccccceeEEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHHHHH
Q 004646 633 GMRCPANTHKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWLQNA 691 (740)
Q Consensus 633 G~G~v~~t~~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wlq~a 691 (740)
|.+++.+.+.++|+||+|+.++ ..+++|.|.....++.|+|+++. .+.+|+.|.+--++
T Consensus 227 G~g~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~D 287 (389)
T PRK14295 227 GSGRAKSSRTMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDN 287 (389)
T ss_pred CCceEeeeeEEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCC
Confidence 9999999999999999999888 45677777655555667899888 66889999985433
No 23
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=1.4e-36 Score=327.50 Aligned_cols=233 Identities=24% Similarity=0.382 Sum_probs=177.0
Q ss_pred CcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhh------h
Q 004646 441 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREEL------L 514 (740)
Q Consensus 441 d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~ed~------~ 514 (740)
|||+||||++ +|+.+|||+|||+||++||||+++ ++.|.++|++|++||+||+||.+|+.||+++..... .
T Consensus 1 d~y~~Lgv~~--~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~ 77 (354)
T TIGR02349 1 DYYEILGVSK--DASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGG 77 (354)
T ss_pred ChHHhCCCCC--CCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCC
Confidence 7999999999 799999999999999999999997 578999999999999999999999999997642100 0
Q ss_pred hhhhhccccccCCC----CccccCCCCC--------CCCCCC----------------CCCCCcccccccccccccceee
Q 004646 515 DYFRRFQSASQKNG----RHGFFGSGYA--------RSEADC----------------DDPFGESRRIACKKCNNFHVWI 566 (740)
Q Consensus 515 d~F~~F~g~~~~~G----~~gfFggGfg--------rsrg~~----------------Ed~f~isR~ViC~kC~GsG~~~ 566 (740)
..|..|.. ..... +..||+++.+ +.++.+ +..+.+++.+.|+.|+|+|
T Consensus 78 ~~~~~~~~-~~~~~~~~~f~~~fg~~~g~~~~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G--- 153 (354)
T TIGR02349 78 GGFNGFDI-GFFGDFGDIFGDFFGGGGGSGRRRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTG--- 153 (354)
T ss_pred CCcCCccc-cCcCchhhhHHHHhccCcccCccccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCC---
Confidence 00000000 00000 1123332110 111211 1245678899999999998
Q ss_pred eeccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCCCCccccceeEEEEE
Q 004646 567 ETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFH 646 (740)
Q Consensus 567 ~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~CqG~G~v~~t~~vsV~ 646 (740)
.........|+.|+ |.|++... +.++||++|+ +++|+ .|.|.|++...+|..|+|.+++.+++.++|+
T Consensus 154 --~~~~~~~~~C~~C~-------G~G~~~~~-~~~~~g~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~ 221 (354)
T TIGR02349 154 --AKPGTDPKTCPTCG-------GTGQVRRQ-QGTPFGFFQQ-QQTCP-TCGGEGKIIKEPCSTCKGKGRVKERKTITVK 221 (354)
T ss_pred --CCCCCCCccCCCCC-------CeeEEEEE-EeccCCceEE-EEecC-CCCCcceecCCCCCCCCCCcEecccceEEEE
Confidence 55566688999999 99988874 5688999876 67999 8999999999999999999999999999999
Q ss_pred EcccccCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHHHHHH
Q 004646 647 VNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWLQNAV 692 (740)
Q Consensus 647 IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wlq~a~ 692 (740)
||+|+.++ ..+++|.|.....++.|+|+++. .+.+|+.|.+.-++|
T Consensus 222 Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL 269 (354)
T TIGR02349 222 IPAGVDTGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDL 269 (354)
T ss_pred ECCCCCCCCEEEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCE
Confidence 99999988 55777777765556678999887 568888888754443
No 24
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-36 Score=329.89 Aligned_cols=222 Identities=27% Similarity=0.406 Sum_probs=173.4
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh--h---
Q 004646 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREE--L--- 513 (740)
Q Consensus 439 ~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~ed--~--- 513 (740)
..|||+||||++ +||.+|||+|||+||++||||+|++++.|+++|++|++||++|+||.+|+.||+++...- .
T Consensus 3 ~~d~y~iLgv~~--~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~ 80 (371)
T PRK10767 3 KRDYYEVLGVSR--NASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGG 80 (371)
T ss_pred CCChHHhcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCC
Confidence 479999999999 799999999999999999999998778899999999999999999999999999764210 0
Q ss_pred ---------hhhhhhccccccCCCCccccCCCC-----CCCCCCC----------------CCCCCcccccccccccccc
Q 004646 514 ---------LDYFRRFQSASQKNGRHGFFGSGY-----ARSEADC----------------DDPFGESRRIACKKCNNFH 563 (740)
Q Consensus 514 ---------~d~F~~F~g~~~~~G~~gfFggGf-----grsrg~~----------------Ed~f~isR~ViC~kC~GsG 563 (740)
.++|.+|+ ..+|+++. ++.++.+ +..+.+.+.+.|+.|+|+|
T Consensus 81 ~~~~~~~~~~~~f~~~f--------~~~fgg~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G 152 (371)
T PRK10767 81 GGFGGGGGFGDIFGDIF--------GDIFGGGRGGGRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSG 152 (371)
T ss_pred CCCCCccccccchhhhh--------hhhccCCccccCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcc
Confidence 00111111 11222211 1112221 2345678899999999998
Q ss_pred eeeeeccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCCCCccccceeEE
Q 004646 564 VWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKP 643 (740)
Q Consensus 564 ~~~~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~CqG~G~v~~t~~v 643 (740)
...+.....|+.|+ |.|.+.... |++| ++++|+ .|.|.|++...+|..|+|.|++...+.+
T Consensus 153 -----~~~~~~~~~C~~C~-------G~G~~~~~~-----g~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~l 213 (371)
T PRK10767 153 -----AKPGTSPKTCPTCH-------GAGQVRMQQ-----GFFT-VQQTCP-TCHGRGKIIKDPCKKCHGQGRVEKEKTL 213 (371)
T ss_pred -----cCCCCCCccCCCCC-------CeeEEEEee-----ceEE-EEEeCC-CCCCceeECCCCCCCCCCCceEeeeeeE
Confidence 55666778999999 999887642 5664 778999 8999999999999999999999999999
Q ss_pred EEEEcccccCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHHH
Q 004646 644 SFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWLQ 689 (740)
Q Consensus 644 sV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wlq 689 (740)
+|+||+|+.++ ..+++|.|.....++.|||+++. .+.+|..|.|--
T Consensus 214 ~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G 261 (371)
T PRK10767 214 SVKIPAGVDTGDRIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDG 261 (371)
T ss_pred EEecCCCCCCCcEEEEecCccCCCCCCCCcCEEEEEEEeeCCCEEEec
Confidence 99999999888 45677777765555578999887 668888988753
No 25
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.5e-36 Score=329.19 Aligned_cols=240 Identities=25% Similarity=0.380 Sum_probs=182.9
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh-------
Q 004646 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE------- 511 (740)
Q Consensus 439 ~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~e------- 511 (740)
..|||++|||++ +||.+|||+|||+||++||||+|+++++|+++|++|++||++|+||++|+.||+++...
T Consensus 4 ~~~~y~~Lgv~~--~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~ 81 (386)
T PRK14289 4 KRDYYEVLGVSK--TATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGG 81 (386)
T ss_pred cCCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCC
Confidence 479999999999 79999999999999999999999888899999999999999999999999999976421
Q ss_pred --------hhhhhhhhc---cccc-cCCCCccccCCCCC---CCCCCC----------------CCCCCccccccccccc
Q 004646 512 --------ELLDYFRRF---QSAS-QKNGRHGFFGSGYA---RSEADC----------------DDPFGESRRIACKKCN 560 (740)
Q Consensus 512 --------d~~d~F~~F---~g~~-~~~G~~gfFggGfg---rsrg~~----------------Ed~f~isR~ViC~kC~ 560 (740)
++.++|.+| ++.. +..++.+.|+++.. +.++.+ +..+.+++.+.|..|+
T Consensus 82 ~~~~~~~~~~~~~f~~f~~~fg~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~ 161 (386)
T PRK14289 82 GGFSGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCH 161 (386)
T ss_pred CCCCCCCcChhhhhHHhhhhhcccccCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCC
Confidence 011222222 1110 00000000111100 111211 1245678899999999
Q ss_pred ccceeeeeccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCCCCccccce
Q 004646 561 NFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANT 640 (740)
Q Consensus 561 GsG~~~~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~CqG~G~v~~t 640 (740)
|+| .........|+.|+ |.|.+... +++.+|++| ++.+|+ .|.|.|+.....|..|.|.|++.++
T Consensus 162 G~G-----~~~~~~~~~C~~C~-------G~G~~~~~-~~~~~G~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~ 226 (386)
T PRK14289 162 GTG-----AEGNNGSETCPTCK-------GSGSVTRV-QNTILGTMQ-TQSTCP-TCNGEGKIIKKKCKKCGGEGIVYGE 226 (386)
T ss_pred CCC-----CCCCCCCCcCCCCc-------CeEEEEEE-EecccceEE-EEEecC-CCCccccccCcCCCCCCCCcEEeee
Confidence 998 55667789999999 99988874 457788886 589999 8999999999999999999999999
Q ss_pred eEEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHHHHHHhhc
Q 004646 641 HKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWLQNAVQAG 695 (740)
Q Consensus 641 ~~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wlq~a~~~~ 695 (740)
+.++|+||+|+.++ ..+++|.|.....++.||||++. .+.+++.|.+-.++|..-
T Consensus 227 ~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~ 283 (386)
T PRK14289 227 EVITVKIPAGVAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYN 283 (386)
T ss_pred EEEEEEeCCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEE
Confidence 99999999999988 56788888765445668999888 557777888876666553
No 26
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.5e-36 Score=327.12 Aligned_cols=228 Identities=24% Similarity=0.385 Sum_probs=173.7
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcH-HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh-------
Q 004646 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE-KAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE------- 511 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p-~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~e------- 511 (740)
.|||+||||++ +||.+|||+|||+||++||||++++++ .|+++|++|++||+||+||.+|+.||+++...
T Consensus 3 ~d~y~vLgv~~--~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~ 80 (365)
T PRK14290 3 KDYYKILGVDR--NASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSN 80 (365)
T ss_pred CChhhhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCC
Confidence 69999999999 799999999999999999999998664 78999999999999999999999999976421
Q ss_pred ----------hhhhhhhhccccccCCCCccccCC-CCC---CCCCCC----------------CCCCCcccccccccccc
Q 004646 512 ----------ELLDYFRRFQSASQKNGRHGFFGS-GYA---RSEADC----------------DDPFGESRRIACKKCNN 561 (740)
Q Consensus 512 ----------d~~d~F~~F~g~~~~~G~~gfFgg-Gfg---rsrg~~----------------Ed~f~isR~ViC~kC~G 561 (740)
++.++|..|+++.. +. .+|++ +.. ++++.+ +..+.+.+.+.|+.|+|
T Consensus 81 ~~~~~~~~~~~~~d~f~~~fg~~~--~~-~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G 157 (365)
T PRK14290 81 FNWDNFTHFSDINDIFNQIFGGNF--GS-DFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSG 157 (365)
T ss_pred ccccccccccchhHHHHHHhcCcc--cc-ccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCcc
Confidence 11234444443210 00 01111 000 111211 12346788999999999
Q ss_pred cceeeeeccCcccccccccccccccccCCCceEEeeeccccceee-EEEeeccccccCCceEEcccccccCCCCccccce
Q 004646 562 FHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIF-QKVDVPCAYVCANSRIYNATDWYICQGMRCPANT 640 (740)
Q Consensus 562 sG~~~~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~-Qqiq~pC~y~C~GsGv~d~teCa~CqG~G~v~~t 640 (740)
+| ... .....|+.|+ |.|+++...+ +|++ |+++++|+ .|.|.|+....+|..|+|.+++.+.
T Consensus 158 ~g-----~~~-~~~~~C~~C~-------G~G~~~~~~~---~g~~~~~~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~ 220 (365)
T PRK14290 158 TG-----AKN-GKLITCPTCH-------GTGQQRIVRG---QGFFRMVTVTTCR-TCGGRGRIPEEKCPRCNGTGTVVVN 220 (365)
T ss_pred cc-----CCC-CCCccCCCCC-------CcCEEEEEec---cCeEEEEEEEeCC-CCCCceeEccCCCCCCCCceeEEEe
Confidence 98 333 3678999999 9998877542 3444 56778999 8999999999999999999999999
Q ss_pred eEEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHHHHH
Q 004646 641 HKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWLQNA 691 (740)
Q Consensus 641 ~~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wlq~a 691 (740)
+.++|+||+|+.++ ..+++|.|+. .++.|+|+++. .+.+|++|.|.-++
T Consensus 221 ~~~~V~Ip~G~~~G~~i~~~g~G~~--~~~~~GDL~v~v~v~~h~~F~R~G~D 271 (365)
T PRK14290 221 EDISVKIPKGATDNLRLRVKGKGQS--YGGRTGDLYVVLRVNNDPNIQRINDD 271 (365)
T ss_pred eEEEEEECCCCCCCcEEEEccccCC--CCCCCCCEEEEEEEcCCCCEEEecCC
Confidence 99999999999888 4566777763 45678999888 66889999985333
No 27
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.2e-35 Score=320.79 Aligned_cols=235 Identities=25% Similarity=0.341 Sum_probs=179.4
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh--------
Q 004646 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-------- 511 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~e-------- 511 (740)
.|||+||||++ +||.+|||+|||+||++||||+|+ ++.|+++|++|++||+||+||.+|+.||.++...
T Consensus 3 ~d~y~vLgv~~--~a~~~eik~ayr~la~~~HPD~~~-~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~~~~ 79 (374)
T PRK14293 3 ADYYEILGVSR--DADKDELKRAYRRLARKYHPDVNK-EPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAAGFP 79 (374)
T ss_pred CChhhhcCCCC--CCCHHHHHHHHHHHHHHHCCCCCC-CcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCCCcC
Confidence 69999999999 799999999999999999999997 4789999999999999999999999999976420
Q ss_pred ------hhhhhhhhccccccCCCCccccC-CCCCCCCCCC----------------CCCCCcccccccccccccceeeee
Q 004646 512 ------ELLDYFRRFQSASQKNGRHGFFG-SGYARSEADC----------------DDPFGESRRIACKKCNNFHVWIET 568 (740)
Q Consensus 512 ------d~~d~F~~F~g~~~~~G~~gfFg-gGfgrsrg~~----------------Ed~f~isR~ViC~kC~GsG~~~~t 568 (740)
++.++|..|++.....+..+ ++ ...++.++.+ +..+.+++.+.|..|+|+|
T Consensus 80 ~~~~~~~~~d~f~~~fg~~~~~~~~~-~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G----- 153 (374)
T PRK14293 80 DMGDMGGFADIFETFFSGFGGAGGQG-GRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSG----- 153 (374)
T ss_pred CcccccchHHHHHHHhcccCCCCCCC-ccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcC-----
Confidence 01244554443210000000 00 0001111211 1245678899999999998
Q ss_pred ccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCCCCccccceeEEEEEEc
Q 004646 569 KKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVN 648 (740)
Q Consensus 569 ~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~CqG~G~v~~t~~vsV~IP 648 (740)
.........|+.|+ |.|++... +++++|++|+ +.+|+ .|.|.|..+..+|..|.|.+++.++++++|+||
T Consensus 154 ~~~~~~~~~C~~C~-------G~G~~~~~-~~~~~g~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip 223 (374)
T PRK14293 154 AKPGTGPTTCSTCG-------GAGQVRRA-TRTPFGSFTQ-VSECP-TCNGTGQVIEDPCDACGGQGVKQVTKKLKINIP 223 (374)
T ss_pred CCCCCCCeeCCCCC-------CcceEEEE-EecCcceEEE-EeeCC-CCCcceeEeccCCCCCCCCcccccceEEEEEeC
Confidence 55666788999999 99988774 4577888875 68999 899999999999999999999999999999999
Q ss_pred ccccCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHHHHHHh
Q 004646 649 TSVTSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWLQNAVQ 693 (740)
Q Consensus 649 aGv~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wlq~a~~ 693 (740)
+|+.++ ..+++|.|.....++.|||+++. .+.+++.|.+-+++|.
T Consensus 224 pG~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~ 270 (374)
T PRK14293 224 AGVDTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINIL 270 (374)
T ss_pred CCCCCCCEEEEccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceE
Confidence 999988 55777777755445567899887 5577778888765554
No 28
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.6e-36 Score=323.80 Aligned_cols=228 Identities=23% Similarity=0.379 Sum_probs=177.9
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhh-----
Q 004646 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELL----- 514 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~ed~~----- 514 (740)
+|||+||||++ +||.+|||+|||+||++||||+++ ++.++++|++|++||++|+||.+|+.||+++... +.
T Consensus 3 ~~~y~iLgv~~--~as~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~-~~~~~~~ 78 (372)
T PRK14300 3 QDYYQILGVSK--TASQADLKKAYLKLAKQYHPDTTD-AKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDA-FQNQQSR 78 (372)
T ss_pred CChHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccc-ccccccc
Confidence 69999999999 799999999999999999999997 4778999999999999999999999999976421 10
Q ss_pred --------------hhhhhccccccCCCCccccCCCC--CC----CCCCC----------------CCCCCccccccccc
Q 004646 515 --------------DYFRRFQSASQKNGRHGFFGSGY--AR----SEADC----------------DDPFGESRRIACKK 558 (740)
Q Consensus 515 --------------d~F~~F~g~~~~~G~~gfFggGf--gr----srg~~----------------Ed~f~isR~ViC~k 558 (740)
++|.+|++ ++|+++. .+ .++.+ +..+.+.+.+.|+.
T Consensus 79 ~~~g~~~~~~~~~~~~f~~~f~--------~~~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~ 150 (372)
T PRK14300 79 GGGGNHGGFHPDINDIFGDFFS--------DFMGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDT 150 (372)
T ss_pred CCCCCCCccccchhhhHHHHHH--------hhcCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCC
Confidence 11111111 0112110 00 11211 22456788999999
Q ss_pred ccccceeeeeccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCCCCcccc
Q 004646 559 CNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPA 638 (740)
Q Consensus 559 C~GsG~~~~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~CqG~G~v~ 638 (740)
|+|+| ...+.....|+.|+ |+|.+... +|++| ++.+|+ .|.|.|.++..+|..|.|.|++.
T Consensus 151 C~G~g-----~~~~~~~~~C~~C~-------G~G~~~~~-----~g~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~ 211 (372)
T PRK14300 151 CHGSG-----SEKGETVTTCDACS-------GVGATRMQ-----QGFFT-IEQACH-KCQGNGQIIKNPCKKCHGMGRYH 211 (372)
T ss_pred CCCcc-----cCCCCCCccCCCcc-------CeEEEEEe-----eceEE-EEEeCC-CCCccceEeCCCCCCCCCceEEE
Confidence 99998 55667788999999 99988762 26765 788999 89999999999999999999999
Q ss_pred ceeEEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHH------------HHHHHhhcccc
Q 004646 639 NTHKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEW------------LQNAVQAGLFD 698 (740)
Q Consensus 639 ~t~~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~w------------lq~a~~~~~f~ 698 (740)
+++.++|+||+|+.++ ..+++|.|.....++.|+|+++. .+.+|++|.+ |.+|+..+-+.
T Consensus 212 ~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~ 285 (372)
T PRK14300 212 KQRNLSVNIPAGVENGTRIRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIE 285 (372)
T ss_pred eeEEEEEEECCCCCCCcEEEEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEE
Confidence 9999999999999888 55677777766556678999887 6688999998 56776665443
No 29
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-35 Score=322.86 Aligned_cols=232 Identities=25% Similarity=0.344 Sum_probs=175.0
Q ss_pred cCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh-hh---
Q 004646 438 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-EL--- 513 (740)
Q Consensus 438 ~~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~e-d~--- 513 (740)
..+|||+||||++ +||.+|||+|||+||++||||+|++ +.|+++|++|++||+||+||.+|+.||+++... +.
T Consensus 3 ~~~d~y~~Lgv~~--~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~ 79 (378)
T PRK14283 3 EKRDYYEVLGVDR--NADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQ 79 (378)
T ss_pred CcCChHHhhCCCC--CCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccccccc
Confidence 3579999999999 7999999999999999999999984 889999999999999999999999999986421 00
Q ss_pred ---------hhhhhhccccccCCCCccc-cCCCC--CCCCCCC----------------CCCCCccccccccccccccee
Q 004646 514 ---------LDYFRRFQSASQKNGRHGF-FGSGY--ARSEADC----------------DDPFGESRRIACKKCNNFHVW 565 (740)
Q Consensus 514 ---------~d~F~~F~g~~~~~G~~gf-FggGf--grsrg~~----------------Ed~f~isR~ViC~kC~GsG~~ 565 (740)
.++|..|.+.. ...+..+ |+++. .+.++.+ ...+.+.+.+.|+.|.|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~-~~~f~~~~fgg~~~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G-- 156 (378)
T PRK14283 80 EDIFNNINFEDIFQGFGFGI-GNIFDMFGFGGGSRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSR-- 156 (378)
T ss_pred cccccccCccccccccccch-hhhccccccCCCCCCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccc--
Confidence 00011110000 0000011 22211 1112221 1245678899999999998
Q ss_pred eeeccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCCCCccccceeEEEE
Q 004646 566 IETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSF 645 (740)
Q Consensus 566 ~~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~CqG~G~v~~t~~vsV 645 (740)
.........|+.|+ |.|++.+. +.+.+|++| .+.+|+ .|.|.|.....+|..|.|.|++.+.+.++|
T Consensus 157 ---~~~~~~~~~C~~C~-------G~G~~~~~-~~~~~g~~~-~~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V 223 (378)
T PRK14283 157 ---AEPGSEVKTCPTCG-------GTGQVKQV-RNTILGQMM-NVTTCP-DCQGEGKIVEKPCSNCHGKGVVRETKTISV 223 (378)
T ss_pred ---cCCCCCCccCCCcC-------CccEEEEE-EeccCceEE-EEEECC-CCCccceecCCCCCCCCCceeeccceeEEE
Confidence 55666788999999 99998874 456778876 457999 899999999999999999999999999999
Q ss_pred EEcccccCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHH
Q 004646 646 HVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWL 688 (740)
Q Consensus 646 ~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wl 688 (740)
.||+|+.++ ..+++|.|.....++.+||+++. .+.+|++|.+.
T Consensus 224 ~IppG~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~ 268 (378)
T PRK14283 224 KIPAGVETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRRE 268 (378)
T ss_pred EECCCCCCCcEEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEe
Confidence 999999888 55777777655444567899887 56778888874
No 30
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-35 Score=312.03 Aligned_cols=224 Identities=26% Similarity=0.349 Sum_probs=166.6
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhh
Q 004646 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREELLDYFR 518 (740)
Q Consensus 439 ~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~ed~~d~F~ 518 (740)
.+.||+||||++ +||++|||||||+||++||||||++ |.++|++|++||||||||+||+.||++++..-...
T Consensus 3 ~~~~y~il~v~~--~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g--- 74 (337)
T KOG0712|consen 3 NTKLYDILGVSP--DASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGG--- 74 (337)
T ss_pred ccccceeeccCC--CcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhccc---
Confidence 478999999999 7999999999999999999999964 89999999999999999999999999985421000
Q ss_pred hccccccCCCCccccCCCC----CCCCCCC----------------CCCCCcccccccccccccceeeeeccCccccccc
Q 004646 519 RFQSASQKNGRHGFFGSGY----ARSEADC----------------DDPFGESRRIACKKCNNFHVWIETKKSKASARWC 578 (740)
Q Consensus 519 ~F~g~~~~~G~~gfFggGf----grsrg~~----------------Ed~f~isR~ViC~kC~GsG~~~~t~r~~skar~C 578 (740)
.++.+.+++..||+.+. ++.++.+ ..++.++++.+|++|.|.| . ....+..|
T Consensus 75 --~~~~g~~~f~~~F~~g~~~~~~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsG-----g-ksg~~~~C 146 (337)
T KOG0712|consen 75 --GGGGGFGGFSQFFGFGGNGGRGRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSG-----G-KSGSAPKC 146 (337)
T ss_pred --CCCCCCccHHHhccCCCcCccccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCC-----C-CCCCCCCC
Confidence 00000001112233221 1222221 2356789999999999997 3 34556799
Q ss_pred ccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEE--cccccccCCCCccccceeEEEEEEcccccCCCc
Q 004646 579 QECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIY--NATDWYICQGMRCPANTHKPSFHVNTSVTSKHN 656 (740)
Q Consensus 579 ~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~--d~teCa~CqG~G~v~~t~~vsV~IPaGv~d~~~ 656 (740)
+.|+ |.|...+ .++++|||.|+++.+|. .|.|+|.. +.+.|..|.|.+++...+.++|+|++|+.+++.
T Consensus 147 ~~C~-------GsGv~~~-~~~~gPg~~qs~q~~C~-~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~k 217 (337)
T KOG0712|consen 147 TTCR-------GSGVQTR-TRQMGPGMVQSPQLVCD-SCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQK 217 (337)
T ss_pred CCCC-------CCCceeE-EEeccccccccceeEec-cCCCccccccccccCcccccchhhhhhheeeccccCCCcccce
Confidence 9999 9998777 56799999999999999 89998875 678999999999999999999999999988753
Q ss_pred ccccCCCC-CCCCCCCCCcccc-CCChhHHHHHH
Q 004646 657 TSKGTSSG-QRGGRMPPPNLEE-TMTEDEFLEWL 688 (740)
Q Consensus 657 rikG~g~~-~r~g~~pgdl~~e-~m~e~eff~wl 688 (740)
+...+.+ +..+-.|+|.... .-.+|..|.+-
T Consensus 218 -i~f~geadea~g~~pgD~vl~i~~k~h~~F~Rr 250 (337)
T KOG0712|consen 218 -ITFKGEADEAPGTKPGDVVLLIDQKEHPGFDRR 250 (337)
T ss_pred -eeeeeeeeecCCCcCccEEEEecccccccceec
Confidence 3333333 2333347776444 22345566555
No 31
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-34 Score=314.70 Aligned_cols=231 Identities=23% Similarity=0.393 Sum_probs=176.5
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh--------
Q 004646 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE-------- 511 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~e-------- 511 (740)
.|||+||||++ +||.+|||+|||+||++||||+++ ++.|+++|++|++||+||+||.+|+.||.++...
T Consensus 2 ~d~y~~Lgv~~--~a~~~~ik~ayr~l~~~~hpD~~~-~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~ 78 (371)
T PRK14292 2 MDYYELLGVSR--TASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGD 78 (371)
T ss_pred CChHHHcCCCC--CCCHHHHHHHHHHHHHHHCCCCCC-ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCc
Confidence 58999999999 799999999999999999999997 5889999999999999999999999999976421
Q ss_pred -------hhhhhhhhccccccCCCCccccCCCCCCCCCCC----------------CCCCCcccccccccccccceeeee
Q 004646 512 -------ELLDYFRRFQSASQKNGRHGFFGSGYARSEADC----------------DDPFGESRRIACKKCNNFHVWIET 568 (740)
Q Consensus 512 -------d~~d~F~~F~g~~~~~G~~gfFggGfgrsrg~~----------------Ed~f~isR~ViC~kC~GsG~~~~t 568 (740)
+..++|..|+++... + +..+ ..++.++.+ ...+.+++.+.|+.|+|+|
T Consensus 79 ~~~~~~~d~~d~f~~~fg~~~~-~--~~~~-~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G----- 149 (371)
T PRK14292 79 PFGGMGFDPMDIFEQLFGGAGF-G--GGRG-RRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSR----- 149 (371)
T ss_pred ccCccCCChHHHHHHhhCCCCc-C--CCCC-cccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccc-----
Confidence 011334444321100 0 0000 001112221 1244678889999999998
Q ss_pred ccCcc-cccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCCCCccccceeEEEEEE
Q 004646 569 KKSKA-SARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHV 647 (740)
Q Consensus 569 ~r~~s-kar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~CqG~G~v~~t~~vsV~I 647 (740)
..... ....|+.|+ |+|.+....+ ..+|++|+ +++|+ .|.|.|......|..|.|.|++.+.+.++|.|
T Consensus 150 ~~~~~~~~~~C~~C~-------G~G~~~~~~~-~~~g~~~~-~~~C~-~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~I 219 (371)
T PRK14292 150 TEPGGKPPKTCPTCR-------GAGAVRAQAR-TIFGVVET-QQPCP-TCRGEGQIITDPCTVCRGRGRTLKAETVKVKL 219 (371)
T ss_pred cCCCCCCCccCCCCC-------CccEEEEEEe-ccCceEEE-eeecC-CCcccceecCCCCCCCCCceEEeecceEEEEE
Confidence 33332 478899999 9998887543 45688864 77999 89999999999999999999999999999999
Q ss_pred cccccCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHHHHHHhh
Q 004646 648 NTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWLQNAVQA 694 (740)
Q Consensus 648 PaGv~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wlq~a~~~ 694 (740)
|+|+.++ ..+++|.|..+.++. +|+++. .+.+|+.|.+..++|..
T Consensus 220 p~G~~~G~~i~~~G~G~~~~~~~--GDL~v~i~v~~h~~f~r~g~dL~~ 266 (371)
T PRK14292 220 PRGIDEGYRIRVAGMGNEGPGGN--GDLYVHIEMEPHPELRREQEHLIY 266 (371)
T ss_pred CCCCCCCcEEEEecCcCCCCCCC--CCEEEEEEEecCCccccchhceeE
Confidence 9999888 557788877654443 899887 66888899987766554
No 32
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.4e-26 Score=243.48 Aligned_cols=73 Identities=42% Similarity=0.604 Sum_probs=69.4
Q ss_pred HHhcCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 004646 435 RLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (740)
Q Consensus 435 ril~~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~ 509 (740)
-++..+|||+||||++ +|+..|||+|||||||+|||||||+||.|.+.|++|+.||||||||+||+.||++|.
T Consensus 11 ~v~~~rDfYelLgV~k--~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GE 83 (336)
T KOG0713|consen 11 AVLAGRDFYELLGVPK--NASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGE 83 (336)
T ss_pred hhhcCCCHHHHhCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhH
Confidence 4556689999999999 899999999999999999999999999999999999999999999999999999984
No 33
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3e-26 Score=242.06 Aligned_cols=227 Identities=22% Similarity=0.337 Sum_probs=162.6
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh------hh
Q 004646 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE------EL 513 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~e------d~ 513 (740)
.|||+||||++ +|+..|||+||++||++||||.|.+ ++|.++|++|.+|||||+|++||+.||..+... +.
T Consensus 43 ~d~Y~vLgv~~--~At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~~~~~g~~ 119 (288)
T KOG0715|consen 43 EDYYKVLGVSR--NATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSDEEKRQEYDVYGLEQHGEFGGNP 119 (288)
T ss_pred cchhhhhCcCC--CCCHHHHHHHHHHHHHhhCCCCCCC-cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhccccccCCc
Confidence 39999999999 8999999999999999999999985 699999999999999999999999999987642 12
Q ss_pred hhhhhhcccc-ccC-CC-Ccccc--CCCCC-CCCCCCCCCCCcccccccccccccceeeeeccCcccccccccccccccc
Q 004646 514 LDYFRRFQSA-SQK-NG-RHGFF--GSGYA-RSEADCDDPFGESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQA 587 (740)
Q Consensus 514 ~d~F~~F~g~-~~~-~G-~~gfF--ggGfg-rsrg~~Ed~f~isR~ViC~kC~GsG~~~~t~r~~skar~C~sCk~~H~a 587 (740)
.+.|..+++. ... .. ...-+ ...+. ..++. ...+.++....|..|.|.+ ..+..+...|..|.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~f~~A~~g~-~~~~~~~~~~~~~t~~~~~-----~~~~~~~~~~~~~~----- 188 (288)
T KOG0715|consen 120 FDVFLEFFGGKMNKRVPDKDQYYDLSLDFKEAVRGS-KKRISFNVLSDCETCFGSG-----AEEGAKRESCKTCS----- 188 (288)
T ss_pred cchHHHhhcccccccccCcccccccccCHHHHhhcc-ccceEEEeecccccccCcC-----cccccccccchhhh-----
Confidence 3444443332 000 00 00000 00000 01111 3456677788999999998 67788899999999
Q ss_pred cCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCCCCccccceeEEEEEEcccccCC-CcccccCCCCCC
Q 004646 588 KDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVNTSVTSK-HNTSKGTSSGQR 666 (740)
Q Consensus 588 kdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~CqG~G~v~~t~~vsV~IPaGv~d~-~~rikG~g~~~r 666 (740)
|.|.+.....+ .|.+ + +|. .|.+.+.+..+.|..|.|.+.+..++.+.+.||+|+.+. .+++.+.+..
T Consensus 189 --~~~~~~~~~~~-~f~~----~-~~~-~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~~-- 257 (288)
T KOG0715|consen 189 --GRGLVSNPKED-PFIL----Y-TCS-YCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGND-- 257 (288)
T ss_pred --CcccccccccC-Ccce----e-ecc-cccccceeccchHHHhhcchhhhhheeEEeecCcccccccEEEEecCCcc--
Confidence 99966653322 2222 2 799 699999888877999999999999999999999999776 5566555543
Q ss_pred CCCCCCCcccc-CCChhHHHHHHHHHHhhccc
Q 004646 667 GGRMPPPNLEE-TMTEDEFLEWLQNAVQAGLF 697 (740)
Q Consensus 667 ~g~~pgdl~~e-~m~e~eff~wlq~a~~~~~f 697 (740)
++++. .+.++..|...-++|....+
T Consensus 258 ------~l~v~~~v~~~~~~~r~~~~i~~~~~ 283 (288)
T KOG0715|consen 258 ------DLFVRLIVAKSPSFRREGKDILYDAI 283 (288)
T ss_pred ------eEEEEEEeccCcccccccCccccccc
Confidence 55554 44555555555555544433
No 34
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.82 E-value=1.9e-20 Score=199.18 Aligned_cols=66 Identities=33% Similarity=0.535 Sum_probs=62.8
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 004646 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~ 508 (740)
+|||+||||++ ++|.+|||+|||+||++||||+++ ++.|+++|++|++||++|+||.+|+.||.++
T Consensus 4 ~d~y~~Lgv~~--~a~~~eik~ayr~la~k~HPD~~~-~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g 69 (306)
T PRK10266 4 KDYYAIMGVKP--TDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDEQRRAEYDQLW 69 (306)
T ss_pred CChHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 69999999999 799999999999999999999997 4789999999999999999999999999975
No 35
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=3.7e-20 Score=195.81 Aligned_cols=68 Identities=37% Similarity=0.541 Sum_probs=64.3
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 004646 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (740)
Q Consensus 439 ~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~ 509 (740)
..|||+||||++ +||.+|||+|||+||++||||+|+ ++.|+++|++|++||+||+||++|+.||+++.
T Consensus 3 ~~d~y~vLgv~~--~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~ 70 (291)
T PRK14299 3 YKDYYAILGVPK--NASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGT 70 (291)
T ss_pred CCCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 479999999999 799999999999999999999997 58899999999999999999999999999864
No 36
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=9.6e-18 Score=177.78 Aligned_cols=70 Identities=46% Similarity=0.680 Sum_probs=67.2
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 004646 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 510 (740)
Q Consensus 439 ~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~ 510 (740)
..|||+||||++ +++.+|||||||++|++|||||||+||.|.+.|+.|.+||+||+|+.+|..||+.+..
T Consensus 4 ~~dyY~lLgi~~--~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~ 73 (296)
T KOG0691|consen 4 DTDYYDLLGISE--DATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKS 73 (296)
T ss_pred cchHHHHhCCCC--CCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 579999999999 7999999999999999999999999999999999999999999999999999998754
No 37
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.4e-17 Score=172.61 Aligned_cols=68 Identities=40% Similarity=0.637 Sum_probs=65.5
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 004646 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~ 509 (740)
.|+|+||||++ +|+.++|||+||+|+++||||+++++|++.++|++|++||++|+||.||..||+++.
T Consensus 31 ~~LYdVLgl~k--~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~ 98 (279)
T KOG0716|consen 31 LDLYDVLGLPK--TATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGE 98 (279)
T ss_pred hHHHHHhCCCc--ccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhh
Confidence 58999999999 799999999999999999999999889999999999999999999999999999864
No 38
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=99.66 E-value=4e-17 Score=146.29 Aligned_cols=89 Identities=42% Similarity=0.861 Sum_probs=81.8
Q ss_pred ccccccccccccceeeeeccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEccccccc
Q 004646 551 SRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYI 630 (740)
Q Consensus 551 sR~ViC~kC~GsG~~~~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~ 630 (740)
.+.+.|++|+|.|.++.|.++...+|+|+.|+++||||||++|+|.+.. |+.. ++|+|.++.+||+++|++
T Consensus 3 ~n~i~C~~C~~~H~r~~t~r~~~~AR~C~~C~~~H~Ak~gDiWaE~~~~----G~~~-----~yy~c~~g~VyDiTeWA~ 73 (94)
T PF14901_consen 3 SNTIRCDKCGGKHKRIETDRPPSAARYCQDCKIRHPAKEGDIWAESSSL----GFLW-----TYYACMDGKVYDITEWAT 73 (94)
T ss_pred cceeechhhCCeeeeEEecCchhhhHhHHHhhhhcccccCCeEEEeccc----ceEE-----EEEEEcCceEEehhhhhh
Confidence 5778999999999999999999999999999999999999999998633 4543 668999999999999999
Q ss_pred CCCCcc--ccceeEEEEEEc
Q 004646 631 CQGMRC--PANTHKPSFHVN 648 (740)
Q Consensus 631 CqG~G~--v~~t~~vsV~IP 648 (740)
|||+.+ .+++|.|++||.
T Consensus 74 Cq~~~~~l~~ntH~vqyri~ 93 (94)
T PF14901_consen 74 CQGMHLHLRPNTHRVQYRIN 93 (94)
T ss_pred ccccccccCCCcccceeeec
Confidence 999999 999999999985
No 39
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.4e-16 Score=174.38 Aligned_cols=68 Identities=41% Similarity=0.615 Sum_probs=63.6
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 004646 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~-p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~ 509 (740)
+.||+||||.+ +|+..+||++||||||+|||||||+. .+|.+.|+.|+.||+|||||+.|+.||.+..
T Consensus 8 ~c~YE~L~v~~--~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre 76 (508)
T KOG0717|consen 8 RCYYEVLGVER--DADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHRE 76 (508)
T ss_pred hHHHHHhcccc--cCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence 68999999999 78999999999999999999999865 6799999999999999999999999998744
No 40
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.64 E-value=2.3e-16 Score=130.22 Aligned_cols=63 Identities=40% Similarity=0.713 Sum_probs=59.5
Q ss_pred CcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcH-HHHHHHHHHHHHHHHhhhhhhhhhhh
Q 004646 441 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE-KAVEAFKKLQNAYEVLFDSFKRKAYD 505 (740)
Q Consensus 441 d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p-~A~e~Fk~I~eAYeVLsDp~kR~~YD 505 (740)
|||+||||++ +++.++||++|+++++++|||+++.++ .+.+.|+.|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~--~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPP--DASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTT--TSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCC--CCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 5899999999 799999999999999999999997654 58899999999999999999999998
No 41
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.3e-15 Score=166.91 Aligned_cols=69 Identities=36% Similarity=0.566 Sum_probs=63.0
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCc---HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 004646 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN---EKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (740)
Q Consensus 439 ~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~---p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~ 509 (740)
..|||.+|+|++ +||.+|||+|||++++.|||||..+. ..|++.|++|.+||||||||++|+.||.+|.
T Consensus 8 e~e~Ya~LNlpk--dAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~ 79 (546)
T KOG0718|consen 8 EIELYALLNLPK--DATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGE 79 (546)
T ss_pred hhhHHHHhCCCc--ccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhh
Confidence 358999999999 79999999999999999999998642 3588999999999999999999999998864
No 42
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.57 E-value=2e-15 Score=177.03 Aligned_cols=70 Identities=31% Similarity=0.385 Sum_probs=64.9
Q ss_pred cCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 004646 438 NCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 510 (740)
Q Consensus 438 ~~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~ 510 (740)
..++||+||||++ +||.++||+|||+||++||||++++ +.|.++|++|++||+|||||.+|+.||++|..
T Consensus 571 ~d~dYYdILGVs~--dAS~~EIKKAYRKLAlkyHPDKN~~-~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~ 640 (1136)
T PTZ00341 571 PDTLFYDILGVGV--NADMKEISERYFKLAENYYPPKRSG-NEGFHKFKKINEAYQILGDIDKKKMYNKFGYD 640 (1136)
T ss_pred CCCChHHHcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHHhCCHHHHHHHhhcccc
Confidence 4579999999999 7999999999999999999999986 47889999999999999999999999998753
No 43
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=5.4e-15 Score=150.82 Aligned_cols=69 Identities=38% Similarity=0.616 Sum_probs=63.4
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCC--CcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 004646 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNM--GNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (740)
Q Consensus 439 ~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~--~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~ 509 (740)
.+|+|+||||.+ +|+..+|||||++|||++|||+++ +..+|.+.|+.|+.||+||+|.++|+.||+.+.
T Consensus 13 ~~d~YevLGVer--~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~ 83 (264)
T KOG0719|consen 13 KKDLYEVLGVER--DATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS 83 (264)
T ss_pred ccCHHHHhhhcc--cCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence 469999999999 799999999999999999999994 336788999999999999999999999999764
No 44
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.53 E-value=1.3e-14 Score=117.87 Aligned_cols=59 Identities=49% Similarity=0.756 Sum_probs=54.5
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCC-cHHHHHHHHHHHHHHHHhhhhhh
Q 004646 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG-NEKAVEAFKKLQNAYEVLFDSFK 500 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~-~p~A~e~Fk~I~eAYeVLsDp~k 500 (740)
.|||+||||++ +++.++||++|+++++++|||++++ .+.+.+.|++|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~--~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPR--DASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 48999999999 7999999999999999999999975 57899999999999999999853
No 45
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=8.6e-15 Score=141.84 Aligned_cols=67 Identities=42% Similarity=0.681 Sum_probs=63.6
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHH-HHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 004646 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-AVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (740)
Q Consensus 439 ~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~-A~e~Fk~I~eAYeVLsDp~kR~~YD~~ 507 (740)
..+||+||||++ +|+.+|||+|||++|++||||+++.++. +.+.|++|++||++|+|+.+|+.||..
T Consensus 5 ~~~~y~iLgv~~--~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 5 LLDYYEILGVPP--NASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhHHHHhCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 469999999998 8999999999999999999999998775 999999999999999999999999985
No 46
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.49 E-value=4.3e-14 Score=112.73 Aligned_cols=55 Identities=44% Similarity=0.680 Sum_probs=51.4
Q ss_pred CcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhh
Q 004646 441 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFD 497 (740)
Q Consensus 441 d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsD 497 (740)
|||+||||++ +++.++||++||+|++++|||++++.+.+.+.|++|++||++|+|
T Consensus 1 ~~y~vLgl~~--~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPP--DASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 6999999999 799999999999999999999997546789999999999999986
No 47
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.46 E-value=8.6e-14 Score=148.94 Aligned_cols=76 Identities=36% Similarity=0.460 Sum_probs=66.2
Q ss_pred hcCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCc---HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 004646 437 LNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN---EKAVEAFKKLQNAYEVLFDSFKRKAYDDELRREEL 513 (740)
Q Consensus 437 l~~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~---p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~ed~ 513 (740)
...+|||+||||.+ +|+..||.|||||+|.++|||...+. ..|+++|..|..|-|||+||+||+.||+. +++
T Consensus 391 s~kRDYYKILGVkR--nAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG---eDP 465 (504)
T KOG0624|consen 391 SGKRDYYKILGVKR--NASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG---EDP 465 (504)
T ss_pred hccchHHHHhhhcc--cccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC---CCC
Confidence 34579999999999 89999999999999999999998754 34889999999999999999999999985 445
Q ss_pred hhhh
Q 004646 514 LDYF 517 (740)
Q Consensus 514 ~d~F 517 (740)
.|.-
T Consensus 466 LD~E 469 (504)
T KOG0624|consen 466 LDPE 469 (504)
T ss_pred CChh
Confidence 5543
No 48
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.45 E-value=9.5e-14 Score=160.21 Aligned_cols=67 Identities=34% Similarity=0.540 Sum_probs=63.4
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 004646 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~ 509 (740)
.|||+||||++ +|+.++||+|||+||++||||+++. +.+.++|++|++||++|+||.+|+.||.++.
T Consensus 2 ~DYYeVLGVs~--dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~ 68 (871)
T TIGR03835 2 RDYYEVLGIDR--DADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGH 68 (871)
T ss_pred CChhHhcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcc
Confidence 59999999999 7999999999999999999999975 8889999999999999999999999999764
No 49
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.4e-13 Score=139.50 Aligned_cols=72 Identities=28% Similarity=0.416 Sum_probs=64.7
Q ss_pred hcCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 004646 437 LNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 510 (740)
Q Consensus 437 l~~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~ 510 (740)
....|+||||||+| ++|+.|||||||+|+++|||||++...+.++.|..|++||+.|+|+..|+.|..++..
T Consensus 96 ~~~fDPyEILGl~p--gas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~P 167 (230)
T KOG0721|consen 96 RQKFDPYEILGLDP--GASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNP 167 (230)
T ss_pred hhcCCcHHhhCCCC--CCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCC
Confidence 34469999999999 7999999999999999999999985456678899999999999999999999998753
No 50
>PHA03102 Small T antigen; Reviewed
Probab=99.40 E-value=2e-13 Score=133.03 Aligned_cols=65 Identities=26% Similarity=0.431 Sum_probs=59.3
Q ss_pred CCcccccCcccCCCC--CHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 004646 440 TDHYSALGLSRFENV--DVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRR 510 (740)
Q Consensus 440 ~d~YeILGV~~~~~A--s~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~ 510 (740)
..+|+||||++ +| |.+|||+|||++|+++||||+++ +++|++|++||++|+|+.+|..||.++..
T Consensus 5 ~~l~~vLGl~~--~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~ 71 (153)
T PHA03102 5 KELMDLLGLPR--SAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEED 71 (153)
T ss_pred HHHHHHcCCCC--CCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCc
Confidence 36799999999 78 99999999999999999999853 47999999999999999999999998653
No 51
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.34 E-value=1.2e-12 Score=129.69 Aligned_cols=69 Identities=28% Similarity=0.446 Sum_probs=60.5
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHH-----HHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 004646 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-----AVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~-----A~e~Fk~I~eAYeVLsDp~kR~~YD~~~ 508 (740)
.|||++|||++..+++..+||++||++++++|||+....+. |.+.|+.|++||++|+||.+|..|+-.+
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l 74 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSL 74 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHh
Confidence 38999999999666889999999999999999999865432 5678999999999999999999999654
No 52
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.30 E-value=3.3e-12 Score=126.00 Aligned_cols=69 Identities=32% Similarity=0.458 Sum_probs=59.6
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHH---HHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 004646 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK---AVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~---A~e~Fk~I~eAYeVLsDp~kR~~YD~~~ 508 (740)
.|||++|||++..++|.++||++||++++++|||++....+ +.+.+..|++||++|+||.+|+.|+-.+
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l 73 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL 73 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence 58999999999656899999999999999999999864322 3346889999999999999999998754
No 53
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.29 E-value=3.6e-12 Score=126.84 Aligned_cols=69 Identities=32% Similarity=0.435 Sum_probs=60.4
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHH-----HHHHHHHHHHHHhhhhhhhhhhhhhh
Q 004646 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAV-----EAFKKLQNAYEVLFDSFKRKAYDDEL 508 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~-----e~Fk~I~eAYeVLsDp~kR~~YD~~~ 508 (740)
.|||++|||++..+++..+||++||+|++++|||++...+.++ +.+..|++||++|+||.+|..|+-.+
T Consensus 6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l 79 (176)
T PRK03578 6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHL 79 (176)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHh
Confidence 6999999999966689999999999999999999987555443 44689999999999999999999654
No 54
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.28 E-value=5.4e-12 Score=125.34 Aligned_cols=71 Identities=28% Similarity=0.363 Sum_probs=63.0
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHH-----HHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 004646 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-----AVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (740)
Q Consensus 439 ~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~-----A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~ 509 (740)
..+||++|||++..+.+..+|+++||+|++++|||++...+. +.+.|..|++||++|+||.+|..|+-.+.
T Consensus 3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 479999999999767899999999999999999999865443 56789999999999999999999997543
No 55
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=3.1e-12 Score=139.64 Aligned_cols=71 Identities=39% Similarity=0.653 Sum_probs=65.6
Q ss_pred HHhcCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 004646 435 RLLNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (740)
Q Consensus 435 ril~~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~-p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~ 507 (740)
...+.+|||.|||+.+ +++.+|||||||++|+.+|||++..+ .+++.+|+++-+||.+|+||.+|..||..
T Consensus 368 kkSkRkd~ykilGi~~--~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg 439 (486)
T KOG0550|consen 368 KKSKRKDWYKILGISR--NASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG 439 (486)
T ss_pred HHhhhhhHHHHhhhhh--hcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence 4444679999999999 89999999999999999999999887 78999999999999999999999999975
No 56
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.9e-12 Score=129.81 Aligned_cols=90 Identities=36% Similarity=0.503 Sum_probs=80.4
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHhcCC------CcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHH
Q 004646 415 PGVPSTSGDDSEMTSEDEVVRLLNCT------DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKK 487 (740)
Q Consensus 415 ~~~~s~~~~ds~~tse~ev~ril~~~------d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~-p~A~e~Fk~ 487 (740)
..+++....|+.+|+.++|+|+|.+. ++|+||.|.| ..+.++||+.||+|++++|||||++| +.|..+|..
T Consensus 22 ~evk~~ek~d~vLts~~qIeRllrpgstyfnLNpfeVLqIdp--ev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdi 99 (250)
T KOG1150|consen 22 QEVKSIEKRDSVLTSKQQIERLLRPGSTYFNLNPFEVLQIDP--EVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDI 99 (250)
T ss_pred HHHHhhhhhhcccCcHHHHHHHhcCCccccccChHHHHhcCC--CCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHH
Confidence 34566788899999999999999953 7899999999 79999999999999999999999988 889999999
Q ss_pred HHHHHHHhhhhhhhhhhhh
Q 004646 488 LQNAYEVLFDSFKRKAYDD 506 (740)
Q Consensus 488 I~eAYeVLsDp~kR~~YD~ 506 (740)
|.+||..|-|+.-|..-+.
T Consensus 100 vkKA~k~l~n~~~rkr~~~ 118 (250)
T KOG1150|consen 100 VKKAYKLLENDKIRKRCLD 118 (250)
T ss_pred HHHHHHHHhCHHHHHHHHH
Confidence 9999999999986665443
No 57
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=3.8e-12 Score=129.62 Aligned_cols=69 Identities=43% Similarity=0.598 Sum_probs=62.1
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 004646 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-EKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (740)
Q Consensus 439 ~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~-p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~ 509 (740)
..|||+||+|.+ +|+.+|||+|||++|+++|||+|+.+ ..|.++|++|.+||++|+|+.+|..||+++.
T Consensus 2 ~~d~~~~l~i~~--~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIAR--SASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccc--cccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 469999999998 68888999999999999999999864 2466689999999999999999999999875
No 58
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.1e-11 Score=128.21 Aligned_cols=69 Identities=33% Similarity=0.553 Sum_probs=63.5
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 004646 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDELRRE 511 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~~e 511 (740)
.|.|+||||.+ +++..||+||||+||++||||++++ +++.+.|+.|..|||+|.|.+.|..||-....+
T Consensus 33 enCYdVLgV~R--ea~KseIakAYRqLARrhHPDr~r~-~e~k~~F~~iAtayeilkd~e~rt~ydyaldhp 101 (329)
T KOG0722|consen 33 ENCYDVLGVAR--EANKSEIAKAYRQLARRHHPDRNRD-PESKKLFVKIATAYEILKDNETRTQYDYALDHP 101 (329)
T ss_pred hhHHHHhhhhh--hccHHHHHHHHHHHHHHhCCcccCC-chhhhhhhhhhcccccccchhhHHhHHHHhcCc
Confidence 59999999999 6899999999999999999999985 788899999999999999999999999765543
No 59
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.05 E-value=1.8e-10 Score=107.71 Aligned_cols=51 Identities=18% Similarity=0.317 Sum_probs=46.2
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhh
Q 004646 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLF 496 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLs 496 (740)
.++|+||||++ ++|.+|||++||+|++++|||+.. + .+.|++|++|||+|.
T Consensus 65 ~eAy~ILGv~~--~As~~eIkkaYRrLa~~~HPDkgG-s---~~~~~kIneAyevL~ 115 (116)
T PTZ00100 65 SEAYKILNISP--TASKERIREAHKQLMLRNHPDNGG-S---TYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHcCCCC--CCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHHh
Confidence 48899999999 789999999999999999999963 3 478999999999995
No 60
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.04 E-value=2.1e-10 Score=120.93 Aligned_cols=57 Identities=39% Similarity=0.519 Sum_probs=50.8
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCC---c----HHHHHHHHHHHHHHHHhhhh
Q 004646 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG---N----EKAVEAFKKLQNAYEVLFDS 498 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~---~----p~A~e~Fk~I~eAYeVLsDp 498 (740)
.++|+||||++ ++|.+|||++||+|+++||||++.. + +.|.++|++|++||++|+..
T Consensus 200 ~~ay~vLgv~~--~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 200 EDAYKVLGVSE--SDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred HhHHHHcCCCC--CCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999 7999999999999999999999742 1 45889999999999999853
No 61
>PHA02624 large T antigen; Provisional
Probab=98.99 E-value=3.4e-10 Score=129.90 Aligned_cols=59 Identities=25% Similarity=0.460 Sum_probs=55.1
Q ss_pred CCcccccCcccCCCC--CHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 004646 440 TDHYSALGLSRFENV--DVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFKRKAY 504 (740)
Q Consensus 440 ~d~YeILGV~~~~~A--s~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~kR~~Y 504 (740)
.++|++|||++ +| +.++||+|||++|++||||++. + +++|++|++||++|+|+.+|..|
T Consensus 11 ~elyelLGL~~--~A~gs~~eIKkAYRkLAkkyHPDKgG-d---eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 11 KELMDLLGLPM--AAWGNLPLMRKAYLRKCKEYHPDKGG-D---EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHcCCCC--CCCCCHHHHHHHHHHHHHHHCcCCCC-c---HHHHHHHHHHHHHHhcHHHhhhc
Confidence 58999999999 78 9999999999999999999974 2 58999999999999999999998
No 62
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=98.98 E-value=6e-10 Score=94.22 Aligned_cols=65 Identities=25% Similarity=0.515 Sum_probs=50.3
Q ss_pred cccccccceeeeeccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEc-ccccccCCCC
Q 004646 556 CKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN-ATDWYICQGM 634 (740)
Q Consensus 556 C~kC~GsG~~~~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d-~teCa~CqG~ 634 (740)
|+.|+|+| .+++..+..|+.|+ |+|++....+ . ++++++++++|+ .|.|+|.++ .++|+.|+|.
T Consensus 1 C~~C~G~G-----~~~~~~~~~C~~C~-------G~G~~~~~~~-~-~~~~~~~~~~C~-~C~G~G~~i~~~~C~~C~G~ 65 (66)
T PF00684_consen 1 CPKCNGTG-----AKPGKKPKTCPQCN-------GSGQVTRRQQ-T-PGGVFQMQQTCP-KCGGTGKIIEKDPCKTCKGS 65 (66)
T ss_dssp -CCCTTTS-----B-STTT-EE-TTSS-------SSSEEEEEEE-S-SSTTEEEEEE-T-TTSSSSEE-TSSB-SSSTTS
T ss_pred CCcCCCcc-----cCCCCCCcCCcCCC-------CeeEEEEEEe-C-CCeEEEEEEECC-CCcceeeEECCCCCCCCCCc
Confidence 89999998 66788999999999 9999998655 3 445668899999 899999987 9999999997
Q ss_pred c
Q 004646 635 R 635 (740)
Q Consensus 635 G 635 (740)
|
T Consensus 66 g 66 (66)
T PF00684_consen 66 G 66 (66)
T ss_dssp S
T ss_pred C
Confidence 5
No 63
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.81 E-value=3.1e-09 Score=117.08 Aligned_cols=69 Identities=29% Similarity=0.447 Sum_probs=62.1
Q ss_pred CCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCC---c--HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 004646 439 CTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG---N--EKAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (740)
Q Consensus 439 ~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~---~--p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~ 509 (740)
-.|+|||||++. +++..|||++||+|++|+||||.+. + .+-+|.+++|++||+.|+|...|+.|-.+|.
T Consensus 97 ~fDPyEILGI~~--~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGt 170 (610)
T COG5407 97 GFDPYEILGIDQ--DTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGT 170 (610)
T ss_pred CCChHHhhcccC--CCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence 469999999999 7899999999999999999999864 1 4577999999999999999999999988753
No 64
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.76 E-value=1.3e-08 Score=101.32 Aligned_cols=69 Identities=19% Similarity=0.247 Sum_probs=60.1
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcH-----HHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 004646 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNE-----KAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p-----~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~ 508 (740)
.|||++|||++.-+.+..++++.||+|.+++|||+....+ .+.+.-..||+||.+|.||-+|+.|=-.+
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L 75 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIAL 75 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHh
Confidence 5899999999966799999999999999999999986542 24456789999999999999999997654
No 65
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.73 E-value=1.5e-08 Score=99.37 Aligned_cols=57 Identities=30% Similarity=0.402 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCcH-----HHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Q 004646 453 NVDVSILKREYRKKAMLVHPDKNMGNE-----KAVEAFKKLQNAYEVLFDSFKRKAYDDELR 509 (740)
Q Consensus 453 ~As~~eIKKAYRkLAlk~HPDKn~~~p-----~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~~ 509 (740)
+.+..+|+++||++++++|||+.+... .+.+.|..|++||++|+||.+|+.|+-.+.
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 367899999999999999999965432 266889999999999999999999998654
No 66
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.8e-08 Score=105.41 Aligned_cols=70 Identities=37% Similarity=0.469 Sum_probs=60.8
Q ss_pred cCCCcccccCcccCC-CCCHHHHHHHHHHHHHHhCCCCC--CCcHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 004646 438 NCTDHYSALGLSRFE-NVDVSILKREYRKKAMLVHPDKN--MGNEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (740)
Q Consensus 438 ~~~d~YeILGV~~~~-~As~~eIKKAYRkLAlk~HPDKn--~~~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~ 507 (740)
...|+|.+|||+.+. .+++.+|.++.++...+||||+. .++.+..+.|+.|+.|||||+|+.+|..||..
T Consensus 41 k~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~ 113 (379)
T COG5269 41 KKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSN 113 (379)
T ss_pred hhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccc
Confidence 346999999998542 27889999999999999999997 23456789999999999999999999999974
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.4e-06 Score=103.35 Aligned_cols=55 Identities=29% Similarity=0.414 Sum_probs=46.4
Q ss_pred CCcccccCcccCCC--CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhh
Q 004646 440 TDHYSALGLSRFEN--VDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFD 497 (740)
Q Consensus 440 ~d~YeILGV~~~~~--As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsD 497 (740)
.+-|+||.|+-... -+.+.|||+|+|||.+|||||| |+..|+|.++++|||.|+.
T Consensus 1281 d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN---PEGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1281 DLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN---PEGREMFERVNKAYELLSS 1337 (2235)
T ss_pred HHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC---chHHHHHHHHHHHHHHHHH
Confidence 47899999985311 2337899999999999999999 5678999999999999993
No 68
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=97.91 E-value=1.3e-05 Score=75.08 Aligned_cols=61 Identities=23% Similarity=0.380 Sum_probs=47.6
Q ss_pred ccccccccccccceeeeeccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEccccccc
Q 004646 551 SRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYI 630 (740)
Q Consensus 551 sR~ViC~kC~GsG~~~~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~ 630 (740)
...+.|..|+|+| . +.|+.|+ |.|++.... . + .++++.+|+ .|.|.|.. .|..
T Consensus 39 ~~~v~C~~C~GsG-----~------~~C~~C~-------G~G~v~~~~---~-g-~~q~~~~C~-~C~G~Gk~---~C~~ 91 (111)
T PLN03165 39 ENTQPCFPCSGTG-----A------QVCRFCV-------GSGNVTVEL---G-G-GEKEVSKCI-NCDGAGSL---TCTT 91 (111)
T ss_pred ccCCCCCCCCCCC-----C------cCCCCCc-------CcCeEEEEe---C-C-cEEEEEECC-CCCCccee---eCCC
Confidence 3457899999987 2 3899999 999987632 1 2 256788999 89999974 4999
Q ss_pred CCCCcccc
Q 004646 631 CQGMRCPA 638 (740)
Q Consensus 631 CqG~G~v~ 638 (740)
|+|.++++
T Consensus 92 C~G~G~~~ 99 (111)
T PLN03165 92 CQGSGIQP 99 (111)
T ss_pred CCCCEEEe
Confidence 99998654
No 69
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=6.5e-05 Score=77.79 Aligned_cols=56 Identities=23% Similarity=0.477 Sum_probs=49.7
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH-Hhhhh
Q 004646 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYE-VLFDS 498 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYe-VLsDp 498 (740)
..||.||||.. .|+.++++.||.+||+.+|||... +....+.|.+|.+||. ||+..
T Consensus 47 ~e~fril~v~e--~~~adevr~af~~lakq~hpdsgs-~~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 47 MECFRILGVEE--GADADEVREAFHDLAKQVHPDSGS-EEADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHHhcccc--cCchhHHHHHHHHHHHHcCCCCCC-ccccHHHHHHHHHHHHHHHHHH
Confidence 37999999999 789999999999999999999986 3666789999999997 88753
No 70
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0018 Score=60.33 Aligned_cols=50 Identities=22% Similarity=0.308 Sum_probs=42.6
Q ss_pred ccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhh
Q 004646 443 YSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDS 498 (740)
Q Consensus 443 YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp 498 (740)
--||||+| +++.+.||+|+|+.-+..|||+... | -.=.+|+||+++|...
T Consensus 59 ~lIL~v~~--s~~k~KikeaHrriM~~NHPD~GGS-P---YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 59 ALILGVTP--SLDKDKIKEAHRRIMLANHPDRGGS-P---YLASKINEAKDLLEGT 108 (112)
T ss_pred HHHhCCCc--cccHHHHHHHHHHHHHcCCCcCCCC-H---HHHHHHHHHHHHHhcc
Confidence 46899999 7999999999999999999999964 5 3334699999999754
No 71
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0013 Score=64.83 Aligned_cols=72 Identities=25% Similarity=0.359 Sum_probs=58.8
Q ss_pred hcCCCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCC----c-HHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 004646 437 LNCTDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMG----N-EKAVEAFKKLQNAYEVLFDSFKRKAYDDEL 508 (740)
Q Consensus 437 l~~~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~----~-p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~~ 508 (740)
....+||.++|.......+++-++.-|.-..+++|||+... + ..|.+.-.+|++||.+|.||-+|+.|=-.+
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl 81 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKL 81 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34578999999876545777778879999999999999532 1 357888999999999999999999997543
No 72
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.80 E-value=0.0011 Score=67.40 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=35.4
Q ss_pred eccccccCCceEEcc--cccccCCCCccccceeEEEEEEcccccCCCccc
Q 004646 611 VPCAYVCANSRIYNA--TDWYICQGMRCPANTHKPSFHVNTSVTSKHNTS 658 (740)
Q Consensus 611 ~pC~y~C~GsGv~d~--teCa~CqG~G~v~~t~~vsV~IPaGv~d~~~ri 658 (740)
.+|+ .|.|+|.++. .+|..|+|.|.+..+++..+++ +|+ +.+.+|
T Consensus 100 ~~C~-~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~-~~g~~i 146 (186)
T TIGR02642 100 CKCP-RCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGV-DSGAAI 146 (186)
T ss_pred CcCC-CCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eec-cCCcee
Confidence 3477 6777776654 6799999999999999999999 898 444455
No 73
>PRK14300 chaperone protein DnaJ; Provisional
Probab=96.66 E-value=0.0022 Score=71.10 Aligned_cols=38 Identities=5% Similarity=0.032 Sum_probs=27.0
Q ss_pred eeEEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc
Q 004646 640 THKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE 677 (740)
Q Consensus 640 t~~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e 677 (740)
.+.++|+||+|+.++ ..+++|.|--..++..+||++++
T Consensus 291 g~~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~ 329 (372)
T PRK14300 291 GGKVNLTIPAGTQNGDQLRLRSKGMSKMRSTIRGDMLTH 329 (372)
T ss_pred CCEEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEE
Confidence 368999999999887 55777766533333456899776
No 74
>PRK14282 chaperone protein DnaJ; Provisional
Probab=96.53 E-value=0.0021 Score=71.13 Aligned_cols=60 Identities=7% Similarity=-0.060 Sum_probs=36.8
Q ss_pred ceeEEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHHHHHHhhcccc
Q 004646 639 NTHKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWLQNAVQAGLFD 698 (740)
Q Consensus 639 ~t~~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wlq~a~~~~~f~ 698 (740)
..+.++|+||+|+.++ ..+++|.|--...++.+||+++. .+..++.+..-|.++...++.
T Consensus 301 dG~~i~v~Ip~g~~~g~~iri~GkG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~l~~ 362 (369)
T PRK14282 301 EGGTTMLKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKELAK 362 (369)
T ss_pred CCcEEEEEeCCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3457899999999887 45777776533222335899887 333334455555555444443
No 75
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.0053 Score=68.18 Aligned_cols=34 Identities=9% Similarity=0.085 Sum_probs=24.0
Q ss_pred EEEEEcccccCC-CcccccCCCCC-CCCCCCCCcccc
Q 004646 643 PSFHVNTSVTSK-HNTSKGTSSGQ-RGGRMPPPNLEE 677 (740)
Q Consensus 643 vsV~IPaGv~d~-~~rikG~g~~~-r~g~~pgdl~~e 677 (740)
++|.||+|.+.+ ..|++|.|=-. ++.+ -|||++.
T Consensus 292 ~~l~ip~Gtq~G~~~rl~gkG~p~~~~~~-~GDl~v~ 327 (371)
T COG0484 292 VKLKIPAGTQTGEVFRLRGKGMPKLRSGG-RGDLYVR 327 (371)
T ss_pred EEEecCCCCccCcEEEEcCCCccccCCCC-cCCEEEE
Confidence 789999999998 56777775432 3332 2789776
No 76
>PRK14284 chaperone protein DnaJ; Provisional
Probab=96.08 E-value=0.012 Score=65.86 Aligned_cols=37 Identities=11% Similarity=0.024 Sum_probs=26.7
Q ss_pred eEEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc
Q 004646 641 HKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE 677 (740)
Q Consensus 641 ~~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e 677 (740)
..++|+||+|+.++ ..+++|.|--..+++.+|||++.
T Consensus 306 ~~i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~ 343 (391)
T PRK14284 306 GTCRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVR 343 (391)
T ss_pred cEEEEEECCccCCCeEEEECCCCCCCCCCCCCCcEEEE
Confidence 57899999999888 45777776543333345899776
No 77
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=95.98 E-value=0.0031 Score=72.71 Aligned_cols=69 Identities=17% Similarity=0.436 Sum_probs=46.0
Q ss_pred cccccccccceeeeeccCcccccccccccccccccCCCceEEeeec-------cccceeeEEEeeccccccCCceEEcc-
Q 004646 554 IACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSE-------PLFFGIFQKVDVPCAYVCANSRIYNA- 625 (740)
Q Consensus 554 ViC~kC~GsG~~~~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q-------~~~pGm~Qqiq~pC~y~C~GsGv~d~- 625 (740)
..|+.|+|.|. -......|+.|+ |+|.+-.... .-..-++.....||+ .|.|+|.+..
T Consensus 3 ~~C~~C~g~G~------i~v~~e~c~vc~-------gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~-~c~gkG~V~v~ 68 (715)
T COG1107 3 KKCPECGGKGK------IVVGEEECPVCH-------GTGFSDDFDPKGVANLSRETVDLFASFEIPCP-KCRGKGTVTVY 68 (715)
T ss_pred ccccccCCCce------Eeeeeeeccccc-------ccccccccChhhhhhhhhccccccccCCCCCC-eeccceeEEEE
Confidence 46999999873 233456799998 8887733210 011223345577999 7999886654
Q ss_pred cccccCCCCcc
Q 004646 626 TDWYICQGMRC 636 (740)
Q Consensus 626 teCa~CqG~G~ 636 (740)
..|..|.|.|.
T Consensus 69 ~~c~~c~G~gk 79 (715)
T COG1107 69 DTCPECGGTGK 79 (715)
T ss_pred eecccCCCcee
Confidence 66999999884
No 78
>PRK14290 chaperone protein DnaJ; Provisional
Probab=95.95 E-value=0.0073 Score=66.79 Aligned_cols=37 Identities=14% Similarity=0.071 Sum_probs=26.5
Q ss_pred eEEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc
Q 004646 641 HKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE 677 (740)
Q Consensus 641 ~~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e 677 (740)
.+++|+||+|+..+ ..+++|.|--..+++.+||+++.
T Consensus 296 g~i~V~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~ 333 (365)
T PRK14290 296 EKYNLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVR 333 (365)
T ss_pred ceEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEE
Confidence 35899999999887 55777776543333346899877
No 79
>PRK14294 chaperone protein DnaJ; Provisional
Probab=95.92 E-value=0.006 Score=67.46 Aligned_cols=36 Identities=11% Similarity=0.040 Sum_probs=26.2
Q ss_pred EEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc
Q 004646 642 KPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE 677 (740)
Q Consensus 642 ~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e 677 (740)
+++|+||+|+.++ ..+++|.|-...+++.+||++++
T Consensus 291 ~~~v~ip~g~~~g~~iri~G~G~p~~~~~~~GDL~V~ 327 (366)
T PRK14294 291 ERELKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQIIE 327 (366)
T ss_pred cEEEEECCCcCCCCEEEECCCCCCCCCCCCCCCEEEE
Confidence 3699999999888 55778777654333346899877
No 80
>PRK14301 chaperone protein DnaJ; Provisional
Probab=95.84 E-value=0.011 Score=65.70 Aligned_cols=36 Identities=14% Similarity=0.055 Sum_probs=25.5
Q ss_pred EEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc
Q 004646 642 KPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE 677 (740)
Q Consensus 642 ~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e 677 (740)
.++|+||+|+.++ ..+++|.|--..+++..|||++.
T Consensus 291 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~ 327 (373)
T PRK14301 291 PVTLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVE 327 (373)
T ss_pred cEEEEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEE
Confidence 3899999999887 55777776543333345899776
No 81
>PRK14291 chaperone protein DnaJ; Provisional
Probab=95.78 E-value=0.015 Score=64.77 Aligned_cols=39 Identities=8% Similarity=0.004 Sum_probs=26.7
Q ss_pred ceeEEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc
Q 004646 639 NTHKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE 677 (740)
Q Consensus 639 ~t~~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e 677 (740)
..+.++|+||+|+.++ ..+++|.|--..++..+||++++
T Consensus 300 dG~~l~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~ 339 (382)
T PRK14291 300 DGKKEKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVR 339 (382)
T ss_pred CCCEEEEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEE
Confidence 3457899999999887 45667776543333345888766
No 82
>PRK14285 chaperone protein DnaJ; Provisional
Probab=95.76 E-value=0.0068 Score=67.10 Aligned_cols=39 Identities=5% Similarity=-0.122 Sum_probs=26.4
Q ss_pred ceeEEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc
Q 004646 639 NTHKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE 677 (740)
Q Consensus 639 ~t~~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e 677 (740)
+.+.++|.||+|+.++ ..+++|.|--..++...||+++.
T Consensus 291 dG~~v~V~Ip~g~~~g~~irl~GkG~p~~~~~~~GDL~V~ 330 (365)
T PRK14285 291 ASKKIKIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILI 330 (365)
T ss_pred CCCEEEEEeCCCcCCCcEEEECCCCccCCCCCCCCCEEEE
Confidence 3457999999999887 55677766433223234889776
No 83
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=95.74 E-value=0.01 Score=65.22 Aligned_cols=36 Identities=14% Similarity=0.035 Sum_probs=26.1
Q ss_pred EEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc
Q 004646 642 KPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE 677 (740)
Q Consensus 642 ~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e 677 (740)
.++|.||+|+.++ ..+++|.|--...++.+||+++.
T Consensus 294 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~i~ 330 (354)
T TIGR02349 294 DVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVT 330 (354)
T ss_pred eEEEEECCcccCCcEEEECCCCcCCCCCCCCCCEEEE
Confidence 5899999999887 55777776543334356899877
No 84
>PRK14286 chaperone protein DnaJ; Provisional
Probab=95.56 E-value=0.03 Score=62.23 Aligned_cols=38 Identities=13% Similarity=-0.019 Sum_probs=25.2
Q ss_pred eeEEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc
Q 004646 640 THKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE 677 (740)
Q Consensus 640 t~~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e 677 (740)
.+.++|.||+|+.++ ..+++|.|--..++...|||++.
T Consensus 296 G~~i~v~ip~g~~~g~~~ri~G~G~P~~~~~~~GDL~V~ 334 (372)
T PRK14286 296 GKKAKMKIPEGTESGQVFRLKGHGMPYLGAYGKGDQHVI 334 (372)
T ss_pred CCEEEEEeCCccCCCcEEEECCCCCCCCCCCCCCcEEEE
Confidence 457899999999887 45777766432222223788766
No 85
>PRK14295 chaperone protein DnaJ; Provisional
Probab=95.48 E-value=0.034 Score=62.23 Aligned_cols=37 Identities=8% Similarity=0.060 Sum_probs=25.9
Q ss_pred eeEEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc
Q 004646 640 THKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE 677 (740)
Q Consensus 640 t~~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e 677 (740)
.+.++|+||+|+.++ ..+++|.|--..++ ..||+++.
T Consensus 312 G~~~~v~ip~g~~~g~~iri~G~G~p~~~~-~~GDL~i~ 349 (389)
T PRK14295 312 GPPVTVKLPPGTPNGRVLRVRGKGAVRKDG-TRGDLLVT 349 (389)
T ss_pred CCEEEEEECCccCCCcEEEECCCCcCCCCC-CCCCEEEE
Confidence 457999999999887 45777776433222 35888766
No 86
>PRK14289 chaperone protein DnaJ; Provisional
Probab=95.46 E-value=0.029 Score=62.53 Aligned_cols=36 Identities=8% Similarity=-0.008 Sum_probs=25.4
Q ss_pred EEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc
Q 004646 642 KPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE 677 (740)
Q Consensus 642 ~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e 677 (740)
.++|.||+|+.++ ..+++|.|--..+++..||++++
T Consensus 305 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~ 341 (386)
T PRK14289 305 KAKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVN 341 (386)
T ss_pred eEEEEECCccCCCcEEEECCCCcCCCCCCCCCcEEEE
Confidence 5899999999887 55777776543333346899766
No 87
>PRK10767 chaperone protein DnaJ; Provisional
Probab=95.40 E-value=0.014 Score=64.71 Aligned_cols=36 Identities=3% Similarity=-0.041 Sum_probs=25.1
Q ss_pred EEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc
Q 004646 642 KPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE 677 (740)
Q Consensus 642 ~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e 677 (740)
.++|.||+|+.++ ..+++|.|--..+++-.|||++.
T Consensus 289 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~ 325 (371)
T PRK10767 289 RVKLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQ 325 (371)
T ss_pred cEEEEeCCCCCCCCEEEECCCCcCCCCCCCCCCEEEE
Confidence 5899999999877 45677766433223345899877
No 88
>PRK14278 chaperone protein DnaJ; Provisional
Probab=95.34 E-value=0.042 Score=61.27 Aligned_cols=38 Identities=5% Similarity=-0.088 Sum_probs=26.2
Q ss_pred eeEEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc
Q 004646 640 THKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE 677 (740)
Q Consensus 640 t~~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e 677 (740)
...++|.||+|+.++ ..+++|.|--..+++..|||++.
T Consensus 289 ~~~i~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V~ 327 (378)
T PRK14278 289 DGPSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAH 327 (378)
T ss_pred CCeEEEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEEE
Confidence 567899999999887 45777766433223335899776
No 89
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=95.12 E-value=0.025 Score=64.59 Aligned_cols=42 Identities=33% Similarity=0.514 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcH-------HHHHHHHHHHHHHHHh
Q 004646 454 VDVSILKREYRKKAMLVHPDKNMGNE-------KAVEAFKKLQNAYEVL 495 (740)
Q Consensus 454 As~~eIKKAYRkLAlk~HPDKn~~~p-------~A~e~Fk~I~eAYeVL 495 (740)
.+.++|||+|||..|.+||||-+..+ -|++.|..+++|++.-
T Consensus 400 Vtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 400 VTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred cCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 67899999999999999999987642 2556777777777643
No 90
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.016 Score=57.79 Aligned_cols=67 Identities=28% Similarity=0.415 Sum_probs=51.7
Q ss_pred CcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHH-----HHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 004646 441 DHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEK-----AVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (740)
Q Consensus 441 d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~-----A~e~Fk~I~eAYeVLsDp~kR~~YD~~ 507 (740)
+++..+|+.+....+.+.++..|+.+.+.||||+....+. +-+.+..++.||.+|.||-+|..|=-.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~la 73 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLA 73 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 3455556655333456789999999999999999865432 345899999999999999999988643
No 91
>PRK14297 chaperone protein DnaJ; Provisional
Probab=94.88 E-value=0.057 Score=60.14 Aligned_cols=36 Identities=8% Similarity=0.003 Sum_probs=24.9
Q ss_pred EEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc
Q 004646 642 KPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE 677 (740)
Q Consensus 642 ~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e 677 (740)
.++|.||+|+.++ ..+++|.|--..+++..|||++.
T Consensus 299 ~~~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~v~ 335 (380)
T PRK14297 299 EVKYEVPAGTQPGTVFRLKGKGVPRVNSTGRGNQYVT 335 (380)
T ss_pred cEEEEECCCcCCCCEEEEcCCCcCCCCCCCCCcEEEE
Confidence 4899999999887 45777776433333345899766
No 92
>PRK14281 chaperone protein DnaJ; Provisional
Probab=94.85 E-value=0.063 Score=60.22 Aligned_cols=36 Identities=8% Similarity=0.061 Sum_probs=24.6
Q ss_pred EEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc
Q 004646 642 KPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE 677 (740)
Q Consensus 642 ~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e 677 (740)
.++|.||+|+.++ ..+++|.|=-...++..|||++.
T Consensus 313 ~i~v~ip~g~~~G~~~ri~g~G~P~~~~~~~GDL~V~ 349 (397)
T PRK14281 313 AVKLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYVR 349 (397)
T ss_pred cEEEEeCCccCCCcEEEEcCCCCCCCCCCCCCCEEEE
Confidence 4899999999887 55777776432222234899776
No 93
>PRK14287 chaperone protein DnaJ; Provisional
Probab=94.83 E-value=0.024 Score=62.94 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=25.1
Q ss_pred EEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc
Q 004646 642 KPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE 677 (740)
Q Consensus 642 ~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e 677 (740)
+++|+||+|+.++ ..+++|.|--..+++..|||++.
T Consensus 289 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~V~ 325 (371)
T PRK14287 289 KVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQ 325 (371)
T ss_pred CEEEEECCCccCCcEEEEcCCCccCCCCCCCCCEEEE
Confidence 4899999999887 45777776433223335899877
No 94
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.021 Score=57.09 Aligned_cols=53 Identities=36% Similarity=0.531 Sum_probs=46.0
Q ss_pred CCcccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCc-------HHHHHHHHHHHHHHHH
Q 004646 440 TDHYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGN-------EKAVEAFKKLQNAYEV 494 (740)
Q Consensus 440 ~d~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~-------p~A~e~Fk~I~eAYeV 494 (740)
.+.|.+||+.. .++..+||++||++...+|||+-..- ..+.+++++|++||+.
T Consensus 113 ~~~l~~l~~~~--~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~ 172 (174)
T COG1076 113 EDALKVLGVEI--KADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYED 172 (174)
T ss_pred hhHHHHhcCch--hhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999 78999999999999999999986321 3578899999999974
No 95
>PRK14298 chaperone protein DnaJ; Provisional
Probab=94.73 E-value=0.022 Score=63.47 Aligned_cols=36 Identities=11% Similarity=0.051 Sum_probs=24.4
Q ss_pred EEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc
Q 004646 642 KPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE 677 (740)
Q Consensus 642 ~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e 677 (740)
+++|.||+|+.++ ..+++|.|--..+++-.|||++.
T Consensus 292 ~i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~ 328 (377)
T PRK14298 292 KVKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVK 328 (377)
T ss_pred CEEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEE
Confidence 3799999999887 45677666433223234899877
No 96
>PRK14283 chaperone protein DnaJ; Provisional
Probab=94.47 E-value=0.093 Score=58.45 Aligned_cols=36 Identities=8% Similarity=-0.105 Sum_probs=24.3
Q ss_pred EEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc
Q 004646 642 KPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE 677 (740)
Q Consensus 642 ~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e 677 (740)
.++|.||+|+.++ ..+++|.|--..+++-.|||+++
T Consensus 297 ~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GdL~v~ 333 (378)
T PRK14283 297 PVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVK 333 (378)
T ss_pred eEEEEeCCCCCCCCEEEECCCCCCCCCCCCCCCEEEE
Confidence 5899999999877 55777665432222234888766
No 97
>PRK14280 chaperone protein DnaJ; Provisional
Probab=94.27 E-value=0.13 Score=57.44 Aligned_cols=36 Identities=11% Similarity=0.045 Sum_probs=24.2
Q ss_pred EEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc
Q 004646 642 KPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE 677 (740)
Q Consensus 642 ~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e 677 (740)
+++|+||+|+.++ ..+++|.|--..+++-.||+++.
T Consensus 294 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~ 330 (376)
T PRK14280 294 KVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVV 330 (376)
T ss_pred eEEEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEEE
Confidence 4799999999887 45677666432222234888766
No 98
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=93.67 E-value=0.019 Score=61.67 Aligned_cols=16 Identities=19% Similarity=0.592 Sum_probs=0.0
Q ss_pred HHH-HHHHHHHHhhhhh
Q 004646 219 FAK-IMLLLSMLWLDCT 234 (740)
Q Consensus 219 ~~~-~~~~~~~~w~~~~ 234 (740)
||. |+|+++.||+=-.
T Consensus 27 ~~~llll~ail~w~~ii 43 (381)
T PF05297_consen 27 FGLLLLLVAILVWFFII 43 (381)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 444 4455677887433
No 99
>PRK14292 chaperone protein DnaJ; Provisional
Probab=93.57 E-value=0.15 Score=56.56 Aligned_cols=35 Identities=11% Similarity=0.073 Sum_probs=24.2
Q ss_pred EEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc
Q 004646 643 PSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE 677 (740)
Q Consensus 643 vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e 677 (740)
..|+||+|+.++ ..+++|.|--...++-+||++++
T Consensus 290 ~~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~ 325 (371)
T PRK14292 290 QVIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVE 325 (371)
T ss_pred EEEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEE
Confidence 479999999887 45667666533333345899776
No 100
>PRK14276 chaperone protein DnaJ; Provisional
Probab=91.88 E-value=0.93 Score=50.72 Aligned_cols=36 Identities=6% Similarity=0.036 Sum_probs=24.5
Q ss_pred EEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc
Q 004646 642 KPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE 677 (740)
Q Consensus 642 ~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e 677 (740)
+++|.||+|+.++ ..+++|.|--..+++.+|||++.
T Consensus 297 ~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~ 333 (380)
T PRK14276 297 DVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVT 333 (380)
T ss_pred cEEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEE
Confidence 4799999999887 45667666433333345898766
No 101
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.28 E-value=0.24 Score=54.25 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=17.2
Q ss_pred cccccCCceEEcccccccCCCCccccceeEEEEEEc
Q 004646 613 CAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVN 648 (740)
Q Consensus 613 C~y~C~GsGv~d~teCa~CqG~G~v~~t~~vsV~IP 648 (740)
|+ +|.|.|. .+|.+|.|.|-..+-..+.|.-.
T Consensus 248 C~-tC~grG~---k~C~TC~gtgsll~~t~~vV~wK 279 (406)
T KOG2813|consen 248 CH-TCKGRGK---KPCTTCSGTGSLLNYTRIVVYWK 279 (406)
T ss_pred CC-cccCCCC---cccccccCccceeeeEEEEEEee
Confidence 44 4444443 45677777665555555555443
No 102
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=90.61 E-value=0.19 Score=42.65 Aligned_cols=49 Identities=22% Similarity=0.533 Sum_probs=30.7
Q ss_pred cccccccccccceeeeecc----CcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCce
Q 004646 552 RRIACKKCNNFHVWIETKK----SKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSR 621 (740)
Q Consensus 552 R~ViC~kC~GsG~~~~t~r----~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsG 621 (740)
....|+.|+|+|..+...+ .-.....|+.|+ |+|.+. . ..+|+ .|.|.|
T Consensus 14 ~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~-------G~G~~i-~------------~~~C~-~C~G~g 66 (66)
T PF00684_consen 14 KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCG-------GTGKII-E------------KDPCK-TCKGSG 66 (66)
T ss_dssp T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTS-------SSSEE--T------------SSB-S-SSTTSS
T ss_pred CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCc-------ceeeEE-C------------CCCCC-CCCCcC
Confidence 4458999999997655442 123457899999 999765 1 23699 799865
No 103
>PRK14279 chaperone protein DnaJ; Provisional
Probab=90.02 E-value=0.22 Score=55.98 Aligned_cols=35 Identities=11% Similarity=0.020 Sum_probs=24.3
Q ss_pred EEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc
Q 004646 642 KPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE 677 (740)
Q Consensus 642 ~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e 677 (740)
+++|.||+|+.++ ..+++|.|--..+ +..|||++.
T Consensus 320 ~i~v~Ip~g~~~g~~iri~g~G~p~~~-~~~GDL~I~ 355 (392)
T PRK14279 320 PVGVKVPAGTADGRILRVRGRGVPKRS-GGAGDLLVT 355 (392)
T ss_pred eEEEEECCCCCCCCEEEECCCCCCCCC-CCCCCEEEE
Confidence 4789999999887 4567777654332 235899766
No 104
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.64 E-value=0.34 Score=53.06 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=18.3
Q ss_pred eeccccccCCceEEcccccccCCCCcc
Q 004646 610 DVPCAYVCANSRIYNATDWYICQGMRC 636 (740)
Q Consensus 610 q~pC~y~C~GsGv~d~teCa~CqG~G~ 636 (740)
...|. .|.|.|+ .+|.+|+|.|.
T Consensus 234 ~~~C~-~C~G~G~---~~C~tC~grG~ 256 (406)
T KOG2813|consen 234 HDLCY-MCHGRGI---KECHTCKGRGK 256 (406)
T ss_pred cchhh-hccCCCc---ccCCcccCCCC
Confidence 34577 7999887 68999999985
No 105
>PRK14288 chaperone protein DnaJ; Provisional
Probab=87.90 E-value=0.35 Score=53.86 Aligned_cols=37 Identities=3% Similarity=0.027 Sum_probs=24.4
Q ss_pred eEEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc
Q 004646 641 HKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE 677 (740)
Q Consensus 641 ~~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e 677 (740)
+.++|.||+|+.++ ..+++|.|=-..++..-|||+++
T Consensus 285 ~~l~i~i~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~ 322 (369)
T PRK14288 285 DELELKIPRNARDRQTFAFRNEGVKHPESSYRGSLIVE 322 (369)
T ss_pred CEEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCEEEE
Confidence 46899999999887 45777766332222122789777
No 106
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=87.10 E-value=0.14 Score=61.50 Aligned_cols=56 Identities=7% Similarity=-0.023 Sum_probs=42.0
Q ss_pred CCCCccccceeEEEEEEcccccCC-CcccccCCCCCCCCCCCCCcccc-CCChhHHHHHH
Q 004646 631 CQGMRCPANTHKPSFHVNTSVTSK-HNTSKGTSSGQRGGRMPPPNLEE-TMTEDEFLEWL 688 (740)
Q Consensus 631 CqG~G~v~~t~~vsV~IPaGv~d~-~~rikG~g~~~r~g~~pgdl~~e-~m~e~eff~wl 688 (740)
|.|...+...+.++|+||+|+.++ ..|++|.|+.+.++ +||+++. .+.+|++|.+-
T Consensus 687 g~G~ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpgg--~GDLyVvIkVKPHp~FrRd 744 (871)
T TIGR03835 687 GNTESTTNEAITLEIQLPITSQLNISAIFKGFGHDFGNG--CGDLKVVFKVIPSNFFQIK 744 (871)
T ss_pred CCCcceeeeeEEEEEecCCCCCCCCEEEeccccCCCCCC--CCCEEEEEEEcCCCCeEEE
Confidence 455556677889999999999887 45667776654333 4899887 56889999984
No 107
>PRK14296 chaperone protein DnaJ; Provisional
Probab=86.60 E-value=0.52 Score=52.64 Aligned_cols=34 Identities=6% Similarity=0.013 Sum_probs=20.9
Q ss_pred EEEEEcccccCC-CcccccCCC--CCCCCCCCCCcccc
Q 004646 643 PSFHVNTSVTSK-HNTSKGTSS--GQRGGRMPPPNLEE 677 (740)
Q Consensus 643 vsV~IPaGv~d~-~~rikG~g~--~~r~g~~pgdl~~e 677 (740)
++|.||+|++.+ ..+++|.|= ..++++ -|||+++
T Consensus 302 ~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~-~GDL~V~ 338 (372)
T PRK14296 302 IKYKLPKSINSNELIIINNKGLYKSINKDK-RGDLIIK 338 (372)
T ss_pred EEEEECCccCCCcEEEEcCCCCCcCCCCCC-cCCEEEE
Confidence 778888888777 456666652 112211 2788776
No 108
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=86.49 E-value=0.5 Score=53.76 Aligned_cols=38 Identities=5% Similarity=-0.119 Sum_probs=22.7
Q ss_pred eeEEEEEEccc--ccCC-CcccccCCCCC-CCCCCCCCcccc
Q 004646 640 THKPSFHVNTS--VTSK-HNTSKGTSSGQ-RGGRMPPPNLEE 677 (740)
Q Consensus 640 t~~vsV~IPaG--v~d~-~~rikG~g~~~-r~g~~pgdl~~e 677 (740)
.+.+.|.||+| +..+ ..+|+|.|=-- ++.+.-|||+++
T Consensus 300 G~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~ 341 (421)
T PTZ00037 300 GRKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVT 341 (421)
T ss_pred CCeEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEE
Confidence 35688999988 6666 44666665221 111112788777
No 109
>PRK14277 chaperone protein DnaJ; Provisional
Probab=85.78 E-value=0.68 Score=51.90 Aligned_cols=49 Identities=20% Similarity=0.546 Sum_probs=28.1
Q ss_pred ccccccccccceeeeeccC----cccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEE
Q 004646 553 RIACKKCNNFHVWIETKKS----KASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIY 623 (740)
Q Consensus 553 ~ViC~kC~GsG~~~~t~r~----~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~ 623 (740)
...|+.|+|+|........ -.....|+.|+ |.|.+.. .+|. .|.|.|++
T Consensus 172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~-------G~G~~~~--------------~~C~-~C~G~g~v 224 (386)
T PRK14277 172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCH-------GEGKIIT--------------DPCN-KCGGTGRI 224 (386)
T ss_pred CccCCCCCCEEEEEEEEeccCceEEEEEECCCCC-------cceeecc--------------CCCC-CCCCCcEE
Confidence 4568888888743221110 01235788887 7775432 2477 68876654
No 110
>PRK10263 DNA translocase FtsK; Provisional
Probab=85.04 E-value=4.6 Score=51.77 Aligned_cols=6 Identities=0% Similarity=-0.108 Sum_probs=2.2
Q ss_pred hhhhhh
Q 004646 149 HLKNMM 154 (740)
Q Consensus 149 ~~~~~~ 154 (740)
+...-+
T Consensus 17 ~~~rrL 22 (1355)
T PRK10263 17 SSGRRL 22 (1355)
T ss_pred chhHHH
Confidence 333333
No 111
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=84.10 E-value=2.3 Score=41.23 Aligned_cols=53 Identities=17% Similarity=0.160 Sum_probs=37.7
Q ss_pred cccccCcccCCCCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhhhh
Q 004646 442 HYSALGLSRFENVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDSFK 500 (740)
Q Consensus 442 ~YeILGV~~~~~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp~k 500 (740)
-..||+|++ ..+.++|.+.|.+|-...+|++... .-.=.+|..|.|.|..+-+
T Consensus 60 A~~ILnv~~--~~~~eeI~k~y~~Lf~~Nd~~kGGS----fYLQSKV~rAKErl~~El~ 112 (127)
T PF03656_consen 60 ARQILNVKE--ELSREEIQKRYKHLFKANDPSKGGS----FYLQSKVFRAKERLEQELK 112 (127)
T ss_dssp HHHHHT--G----SHHHHHHHHHHHHHHT-CCCTS-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCC--ccCHHHHHHHHHHHHhccCCCcCCC----HHHHHHHHHHHHHHHHHHH
Confidence 367899999 7899999999999999999998853 2334568888888875543
No 112
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=83.53 E-value=0.56 Score=54.96 Aligned_cols=32 Identities=34% Similarity=0.566 Sum_probs=20.5
Q ss_pred cccccccccccccceeeeeccCcccccccccccccccccCCCceEE
Q 004646 550 ESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVE 595 (740)
Q Consensus 550 isR~ViC~kC~GsG~~~~t~r~~skar~C~sCk~~H~akdG~G~Ve 595 (740)
.++.++|+.|+|.|. -.-...|+.|+ |+|.+.
T Consensus 50 ~~~~~pc~~c~gkG~-------V~v~~~c~~c~-------G~gkv~ 81 (715)
T COG1107 50 ASFEIPCPKCRGKGT-------VTVYDTCPECG-------GTGKVL 81 (715)
T ss_pred ccCCCCCCeecccee-------EEEEeecccCC-------CceeEE
Confidence 455677888888762 12345688887 777543
No 113
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=82.07 E-value=45 Score=40.73 Aligned_cols=57 Identities=23% Similarity=0.352 Sum_probs=34.9
Q ss_pred hhhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcc-hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004646 197 AHDYVSRKVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRG-IDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVV 275 (740)
Q Consensus 197 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~w~~~~~rg-~~~~~~~g~~~~~~~~w~~~~~~~~m~~~~~~l~~~~~ 275 (740)
+--.+.++||+.||. ||+ ||- +|||--=|-+ |+|+..|+.-..=|+|++++-+-+++
T Consensus 43 ~d~~~~~r~e~~~p~---wl~-----------------~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~~~~~~p~~~~~ 100 (697)
T PF09726_consen 43 ADFMLEFRFEYLWPF---WLL-----------------LRSVYDSFKYQGLA--FSVFFVCIAFTSDLICLFFIPVHWLF 100 (697)
T ss_pred HHHHhhhHHHHHHHH---HHH-----------------HHHHHHHHhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567889999996 321 111 1333222322 88888888877788888887554433
No 114
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=82.06 E-value=0.81 Score=46.88 Aligned_cols=34 Identities=21% Similarity=0.522 Sum_probs=25.1
Q ss_pred ccccccccccccceeeeeccCcccccccccccccccccCCCceEEee
Q 004646 551 SRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQS 597 (740)
Q Consensus 551 sR~ViC~kC~GsG~~~~t~r~~skar~C~sCk~~H~akdG~G~Ve~~ 597 (740)
.+...|+.|+|+|..+ .....|+.|+ |+|.+...
T Consensus 97 ~~~~~C~~C~G~G~~i------~~~~~C~~C~-------G~G~v~~~ 130 (186)
T TIGR02642 97 LNSCKCPRCRGTGLIQ------RRQRECDTCA-------GTGRFRPT 130 (186)
T ss_pred HcCCcCCCCCCeeEEe------cCCCCCCCCC-------CccEEeee
Confidence 4467899999998432 1126799999 99988764
No 115
>PRK14293 chaperone protein DnaJ; Provisional
Probab=81.27 E-value=1.1 Score=50.05 Aligned_cols=35 Identities=9% Similarity=0.023 Sum_probs=22.7
Q ss_pred EEEEEcccccCC-CcccccCCCCCCCC-CCCCCcccc
Q 004646 643 PSFHVNTSVTSK-HNTSKGTSSGQRGG-RMPPPNLEE 677 (740)
Q Consensus 643 vsV~IPaGv~d~-~~rikG~g~~~r~g-~~pgdl~~e 677 (740)
++|.||+|+..+ ..+++|.|=-..++ +--||++++
T Consensus 295 ~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v~ 331 (374)
T PRK14293 295 VELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLIT 331 (374)
T ss_pred EEEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEEE
Confidence 789999998777 55777766432221 122788777
No 116
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=79.92 E-value=1.8 Score=47.18 Aligned_cols=54 Identities=30% Similarity=0.348 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC----cHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 004646 454 VDVSILKREYRKKAMLVHPDKNMG----NEKAVEAFKKLQNAYEVLFDSFKRKAYDDE 507 (740)
Q Consensus 454 As~~eIKKAYRkLAlk~HPDKn~~----~p~A~e~Fk~I~eAYeVLsDp~kR~~YD~~ 507 (740)
++..+|+.+|+..++.+|||+... .-...+.|++|.+||++|.+.++|..+|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 567899999999999999999831 124567899999999999997777777764
No 117
>KOG4800 consensus Neuronal membrane glycoprotein/Myelin proteolipid protein [Function unknown]
Probab=79.83 E-value=8.2 Score=40.82 Aligned_cols=50 Identities=16% Similarity=0.417 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHHH
Q 004646 248 SFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVI 313 (740)
Q Consensus 248 ~~~~~~w~~~~~~~~m~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~f~~t~~~~ 313 (740)
-+..|=|...+++++++++++.++- ++...+++|+. +|. .-.||+|+.+.
T Consensus 57 tv~ii~~~F~~~~~~wI~ifqyvf~----~iaa~f~~yG~--~il----------~egF~ttgA~r 106 (248)
T KOG4800|consen 57 TVLIIEQYFSINIVSWICIFQYVFY----GIAAFFFLYGI--LIL----------AEGFYTTGAVR 106 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhH--HHH----------hhhhhhhhhHH
Confidence 3566778899999999999997554 44445566633 332 33678888775
No 118
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=79.81 E-value=1.9 Score=40.93 Aligned_cols=46 Identities=22% Similarity=0.464 Sum_probs=31.7
Q ss_pred cccccccccceeeeeccC-cccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEc
Q 004646 554 IACKKCNNFHVWIETKKS-KASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN 624 (740)
Q Consensus 554 ViC~kC~GsG~~~~t~r~-~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d 624 (740)
..|+.|+|+|........ -.....|+.|+ |+|.+ +|. .|.|.+...
T Consensus 53 ~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~-------G~Gk~-----------------~C~-~C~G~G~~~ 99 (111)
T PLN03165 53 QVCRFCVGSGNVTVELGGGEKEVSKCINCD-------GAGSL-----------------TCT-TCQGSGIQP 99 (111)
T ss_pred cCCCCCcCcCeEEEEeCCcEEEEEECCCCC-------Cccee-----------------eCC-CCCCCEEEe
Confidence 389999999965433211 12256899999 88831 288 899988654
No 119
>KOG2292 consensus Oligosaccharyltransferase, STT3 subunit [Posttranslational modification, protein turnover, chaperones]
Probab=79.50 E-value=2.5 Score=49.41 Aligned_cols=86 Identities=28% Similarity=0.563 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhhhhh----------hHHHHHHHHHHHHHHhh-----hhhhHH-------HHHhhhhhhhhccchhHHH
Q 004646 272 VLVVAALVAFFIGFAL----------ALVVVALSGTILLWLYG-----SFWTTF-------FVIFLGGLAFKFTHERLAL 329 (740)
Q Consensus 272 ~~~~~~~~~~~~g~~~----------~~~iv~~~~~~ilw~~~-----~f~~t~-------~~~i~g~~~f~l~~~~~~~ 329 (740)
-|.+|++++.-.||.- |+.|.++.-.+-||.=+ .||.+. ++--|||+.|..|.--+-+
T Consensus 147 GL~AA~fiaivPgYiSRSVAGSYDNE~IAIfal~~T~ylwiKavkTGSifwa~~~aL~YFYMVsaWGGYvFiiNLIPLHV 226 (751)
T KOG2292|consen 147 GLLAAAFIAIVPGYISRSVAGSYDNEGIAIFALLFTYYLWIKAVKTGSIFWAACCALAYFYMVSAWGGYVFIINLIPLHV 226 (751)
T ss_pred cHHHHHHHhhCcccccccccccccchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhheeeccceEEEEechHHHH
Confidence 4667777777778753 55566665556677532 233332 1234699999999888877
Q ss_pred HHHhhhheeeeeeeehh-----hHHHHHhhhhh
Q 004646 330 FITTMYSIYCAWTYVGW-----LGLLLALNLSF 357 (740)
Q Consensus 330 ~~~~~y~~yc~~~~~gw-----lg~~l~~nl~f 357 (740)
|+..+..=|+.|+|++. ||.+||+-..|
T Consensus 227 lvlllmGRyS~rlyiaY~t~y~lGtllsmqipf 259 (751)
T KOG2292|consen 227 LVLLLMGRYSSRLYIAYTTFYCLGTLLSMQIPF 259 (751)
T ss_pred HHHHHhcccccceeeehhhHHHHHHHHHccCcc
Confidence 77777777777777765 68889888774
No 120
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=78.74 E-value=4.8 Score=36.38 Aligned_cols=31 Identities=26% Similarity=0.459 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 004646 268 KFLMVLVVAALVAFFIGFALALVVVALSGTI 298 (740)
Q Consensus 268 ~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ 298 (740)
.+++++++++++|.++|.....+.+++++.+
T Consensus 11 ~l~~~~l~~~lvG~~~g~~~~~l~~~l~~~l 41 (90)
T PF11808_consen 11 RLLLLLLAAALVGWLFGHLWWALLLGLLLYL 41 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4556677788888888888877777665443
No 121
>COG4709 Predicted membrane protein [Function unknown]
Probab=78.12 E-value=24 Score=36.60 Aligned_cols=45 Identities=9% Similarity=0.129 Sum_probs=24.0
Q ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004646 238 IDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFF 282 (740)
Q Consensus 238 ~~~~~~~g~~~~~~~~w~~~~~~~~m~~~~~~l~~~~~~~~~~~~ 282 (740)
+..+++||.-+++.++|..+.-+...+.++-..+.+++++.+...
T Consensus 82 ii~~~~L~~~~v~i~Lpl~~~vi~~viailv~~lt~if~~~a~~~ 126 (195)
T COG4709 82 IIALIGLGLLAVIIGLPLLIGVILFVIAILVAALTLIFSGWALVA 126 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666677777777665544444443333333333333333
No 122
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=76.88 E-value=17 Score=35.13 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhhhhhhccchh
Q 004646 291 VVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHER 326 (740)
Q Consensus 291 iv~~~~~~ilw~~~~f~~t~~~~i~g~~~f~l~~~~ 326 (740)
++++++++++|+... +.+.++.+..+.+..+-|+-
T Consensus 101 ~~~~~~~~~l~~~~~-~~~l~~~l~~~~~lvl~HA~ 135 (153)
T PF03208_consen 101 ALLIVSILLLFFTSA-GLTLFWSLGASVLLVLLHAS 135 (153)
T ss_pred HHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHH
Confidence 344444555555444 33334444444444444443
No 123
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=76.67 E-value=18 Score=40.50 Aligned_cols=130 Identities=18% Similarity=0.239 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhc--c-hhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 004646 216 LGHFAKIMLLLSMLWLDCTIR--G-IDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVV 292 (740)
Q Consensus 216 ~~~~~~~~~~~~~~w~~~~~r--g-~~~~~~~g~~~~~~~~w~~~~~~~~m~~~~~~l~~~~~~~~~~~~~g~~~~~~iv 292 (740)
++-++.+++.++..|+|-.+- + +..+...+..+.=.|+=...=|++++.+.++=++..++..+.++| +|.++=.
T Consensus 11 l~~~~av~la~~~~~ld~~~~~~~~~~~~~~~~~~~ar~lLstia~smitv~~~~fSi~~val~~assq~---sPR~l~~ 87 (371)
T PF10011_consen 11 LYAVLAVVLAFLTPYLDRLLPDSGLLPFFFLIGPDGARTLLSTIAGSMITVTGFVFSITLVALQLASSQF---SPRLLRN 87 (371)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---chHHHHH
Confidence 344566777777788876544 1 444555555443333333333344444444444444445555544 5544311
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhhhhhhhhcc----chhHHHHHHhhhheeeeeeeehhhH
Q 004646 293 ALSGTILLWLYGSFWTTFFVIFLGGLAFKFT----HERLALFITTMYSIYCAWTYVGWLG 348 (740)
Q Consensus 293 ~~~~~~ilw~~~~f~~t~~~~i~g~~~f~l~----~~~~~~~~~~~y~~yc~~~~~gwlg 348 (740)
=+-==..-+.+|.|-.|++.-+++.....-. -.+++++++.++++.|...-+.|..
T Consensus 88 f~~d~~~q~vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~ 147 (371)
T PF10011_consen 88 FMRDRVTQVVLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIH 147 (371)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 0001112222333333332222222222222 3477788888888888766555554
No 124
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=75.20 E-value=24 Score=35.86 Aligned_cols=65 Identities=17% Similarity=0.321 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhhhc----cchhHHHHHHhhhheeeeeeeehhhHHHH
Q 004646 287 LALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKF----THERLALFITTMYSIYCAWTYVGWLGLLL 351 (740)
Q Consensus 287 ~~~~iv~~~~~~ilw~~~~f~~t~~~~i~g~~~f~l----~~~~~~~~~~~~y~~yc~~~~~gwlg~~l 351 (740)
..++|.+++--+++++-|.+|......+++|+..-+ .+-+=....+..|++|+......++=+++
T Consensus 59 G~~~i~~~i~gl~~~~~G~~~~~~~~~iv~gliAElI~~~g~y~~~~~~~iay~vf~~~~~g~~~p~~~ 127 (186)
T PF09605_consen 59 GAFLIMGIIMGLIFFLMGHGWPMLIVCIVGGLIAELILKKGGYKSKKRNTIAYAVFSLGYMGPYLPIWF 127 (186)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 455666666666778888889888888888875433 22222334566777777765544444444
No 125
>cd06181 BI-1-like BAX inhibitor (BI)-1 like protein family. Mammalian members of this family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well characterized oncogene, or inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, E.coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.
Probab=71.83 E-value=1.2e+02 Score=30.87 Aligned_cols=45 Identities=20% Similarity=0.132 Sum_probs=25.6
Q ss_pred HHHHHHhhhh-hhcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHH
Q 004646 224 LLLSMLWLDC-TIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFK 268 (740)
Q Consensus 224 ~~~~~~w~~~-~~rg~~~~~~~g~~~~~~~~w~~~~~~~~m~~~~~ 268 (740)
.+.+..|+-| ..+.-..-.++.--..|.+.....++.+.......
T Consensus 50 ~l~~~~~l~~~~~~~~~~~~~~~ll~~ft~~~g~~l~~~~~~~~~~ 95 (212)
T cd06181 50 FLGLVILLFCCRIKRRSSPANLILLFLFTALMGVTLGPILSVYTAA 95 (212)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3344555555 45555556666666666666666666655544433
No 126
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=70.63 E-value=11 Score=36.41 Aligned_cols=71 Identities=17% Similarity=0.216 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhH-HHHHhhhhhhhhccchhHHHHHHhhhheeeee
Q 004646 267 FKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTT-FFVIFLGGLAFKFTHERLALFITTMYSIYCAW 341 (740)
Q Consensus 267 ~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~f~~t-~~~~i~g~~~f~l~~~~~~~~~~~~y~~yc~~ 341 (740)
-|+++++++.++...+ .| ++++.++.++.+|.|.+.+.. .-=+.+++.-+.-++.-+++++.++..+|+..
T Consensus 43 NY~~i~~~~~~~~ll~---~P-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (153)
T PF03208_consen 43 NYLLIFLLLFLIFLLT---NP-FFLLVLLLVVALWAFIYKSRKENDPIVIGGRKISPRQVLLALLIVSILLLFFTS 114 (153)
T ss_pred HHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHHHHHhhhcccCcchhccCcccCHHHHHHHHHHHHHHHHHHHh
Confidence 3555544444432222 23 334444557777888877775 22334556666666666677777766766643
No 127
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=69.01 E-value=18 Score=36.11 Aligned_cols=10 Identities=40% Similarity=0.378 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 004646 271 MVLVVAALVA 280 (740)
Q Consensus 271 ~~~~~~~~~~ 280 (740)
++.||++++.
T Consensus 19 i~~gI~~Lv~ 28 (191)
T PF04156_consen 19 IASGIAALVL 28 (191)
T ss_pred HHHHHHHHHH
Confidence 3333444333
No 128
>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised. It is found in bacterial and eukaryotic proteins.
Probab=65.71 E-value=34 Score=38.30 Aligned_cols=132 Identities=16% Similarity=0.231 Sum_probs=75.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhh--h--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004646 207 QVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFM--R--MGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFF 282 (740)
Q Consensus 207 ~~~p~~~~~~~~~~~~~~~~~~~w~~~~~rg~~~~~--~--~g~~~~~~~~w~~~~~~~~m~~~~~~l~~~~~~~~~~~~ 282 (740)
-..+-+..+...+|-++++++.+-.+-.+-++..-+ + |-...+++.=| .+.++.+++++|+..++...|
T Consensus 198 P~~~~~~~~~~~vg~iy~li~~ff~~~~~~~i~~~~~~~~~l~~~~~~~~R~-------~~~~~~~~~~Sl~~~~v~~af 270 (382)
T PF12051_consen 198 PFTDPVALAPSQVGLIYLLILTFFQFMFLGPIHMEMGLRRKLKPRHYLIYRW-------IISWIAYFFLSLFYSLVSLAF 270 (382)
T ss_pred cCCchhhcchhhHHHHHHHHHHHHHHHHhhhHHHhhhcccccCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 345668888999999999998888887777776655 2 22223333222 233445666666666655332
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhhhccchhHHHHHHhhhheeeeeeeehhhHHHHHhhhh--hhhH
Q 004646 283 IGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLS--FVSS 360 (740)
Q Consensus 283 ~g~~~~~~iv~~~~~~ilw~~~~f~~t~~~~i~g~~~f~l~~~~~~~~~~~~y~~yc~~~~~gwlg~~l~~nl~--flS~ 360 (740)
+....+-. |=-|.+++||+....|.+.- + -.|-+ .++.+-+.-..||-+.+.+|++ |..-
T Consensus 271 -~~~~~~~~-g~~gf~v~Wm~~~l~m~a~g----~-----~~e~~-------~~~i~~~~~~~~ll~wvi~nv~~~~~P~ 332 (382)
T PF12051_consen 271 -QVDFTVAF-GKGGFVVYWMFSWLYMSAVG----L-----ANENV-------ISIIGPPFMPFWLLFWVILNVSSTFYPL 332 (382)
T ss_pred -CCCccccC-CCCcHHHHHHHHHHHHHHHH----H-----HHHHH-------HHHHccchHHHHHHHHHHHhcccccCCh
Confidence 22221100 11457889998665554333 2 11111 1222667777888888888885 4444
Q ss_pred HHH
Q 004646 361 DAL 363 (740)
Q Consensus 361 diL 363 (740)
++.
T Consensus 333 el~ 335 (382)
T PF12051_consen 333 ELS 335 (382)
T ss_pred hhC
Confidence 333
No 129
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=65.54 E-value=73 Score=36.89 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=17.6
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHh
Q 004646 279 VAFFIGFALALVVVALSGTILLWLY 303 (740)
Q Consensus 279 ~~~~~g~~~~~~iv~~~~~~ilw~~ 303 (740)
..+..++|.|++++|+ +..+|-|
T Consensus 136 ~~~l~~~~g~~~~~p~--~~l~~~~ 158 (495)
T PRK11644 136 NALLLTLTGGLTLAPT--CLLFWHY 158 (495)
T ss_pred HHHHHHHhchHHHHHH--HHHHHHH
Confidence 3455677888888888 8888877
No 130
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=64.13 E-value=34 Score=40.51 Aligned_cols=43 Identities=12% Similarity=0.174 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHhhhhhhH
Q 004646 247 TSFFSVIWCSILSVIAMV---GMFKF-LMVLVVAALVAFFIGFALAL 289 (740)
Q Consensus 247 ~~~~~~~w~~~~~~~~m~---~~~~~-l~~~~~~~~~~~~~g~~~~~ 289 (740)
.++.+++++.++.+++.. ++.|. +++|.++++++.|+-++.|+
T Consensus 51 ~s~~~~~~~~~~~~~~l~~~~~~~k~~~~~l~~~sa~~~Yf~~~ygv 97 (545)
T PRK11598 51 ASMPVVAFSVINIVFTLLSFPWLRRPLACLFILVGAAAQYFMMTYGI 97 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456666666666666555 44444 44555556665555544443
No 131
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=63.67 E-value=1.3e+02 Score=28.33 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=22.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 004646 206 QQVYPVALNHLGHFAKIMLLLSMLWLD 232 (740)
Q Consensus 206 ~~~~p~~~~~~~~~~~~~~~~~~~w~~ 232 (740)
-+.||.+..+++-...+++++......
T Consensus 34 p~~fP~~l~~~l~~~~~~l~~~~~~~~ 60 (141)
T PF07331_consen 34 PGFFPRLLGILLLILSLLLLVRSFRGP 60 (141)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 468999999999999988887776653
No 132
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=62.81 E-value=15 Score=34.78 Aligned_cols=45 Identities=22% Similarity=0.219 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcHHH----HHHHHHHHHHHHHhhhh
Q 004646 454 VDVSILKREYRKKAMLVHPDKNMGNEKA----VEAFKKLQNAYEVLFDS 498 (740)
Q Consensus 454 As~~eIKKAYRkLAlk~HPDKn~~~p~A----~e~Fk~I~eAYeVLsDp 498 (740)
.+..++|.|.|..-+++|||.....|+. ++.++.|+.-.+.|..+
T Consensus 6 ~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 6 LSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 5667999999999999999988766653 34577777766666644
No 133
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=61.86 E-value=22 Score=40.84 Aligned_cols=77 Identities=17% Similarity=0.329 Sum_probs=46.6
Q ss_pred hh---hhcchhhhhh--cchhhHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 004646 232 DC---TIRGIDSFMR--MGTTSFFSVIWCSIL----------SVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSG 296 (740)
Q Consensus 232 ~~---~~rg~~~~~~--~g~~~~~~~~w~~~~----------~~~~m~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~ 296 (740)
|| ..-|..++.| +|.+.||++|..+.+ .+=.-.+.+|+|+.+++.. +.|.+|--.
T Consensus 64 ~C~~~~c~G~~aVyRvsfal~~Ff~l~~l~~i~v~~~~d~Ra~ihng~W~~K~l~l~~l~v----------~~FfiP~~~ 133 (429)
T PF03348_consen 64 DCPSDSCVGYSAVYRVSFALALFFFLMALLTIGVKSSRDPRAAIHNGFWFLKFLLLIGLIV----------GAFFIPNGS 133 (429)
T ss_pred CcchHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHhhHHHHHHHHHHHHh----------eeEEeCchH
Confidence 67 6668888888 477778888877766 2334567778776654432 222233322
Q ss_pred HHHHHHhhhhhhHHHHHhhhhh
Q 004646 297 TILLWLYGSFWTTFFVIFLGGL 318 (740)
Q Consensus 297 ~~ilw~~~~f~~t~~~~i~g~~ 318 (740)
.+-.|+|..-.+.+++|++..+
T Consensus 134 f~~~~~~v~~~ga~~FiliQlI 155 (429)
T PF03348_consen 134 FINVYMYVARVGAFIFILIQLI 155 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677666665555555554
No 134
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=61.56 E-value=1.5e+02 Score=28.56 Aligned_cols=48 Identities=15% Similarity=0.401 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 004646 248 SFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALS 295 (740)
Q Consensus 248 ~~~~~~w~~~~~~~~m~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~ 295 (740)
.+++-+++.++++.....=+..-.+.--+.+.-.++|.+.-.+++|..
T Consensus 33 ~~i~~~Y~i~fg~ll~~~E~~~~~i~~~~~FL~~~~GRGlfyif~G~l 80 (136)
T PF08507_consen 33 SFILGVYCILFGLLLILAEFRWPFIRKYFGFLYSYIGRGLFYIFLGTL 80 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHhHhHHHhHHHHHHHHHHHHHH
Confidence 444444455555444433333333555566667777777666666653
No 135
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=61.23 E-value=1e+02 Score=37.69 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=10.0
Q ss_pred eeeehhhHHHHHhhhhhhh
Q 004646 341 WTYVGWLGLLLALNLSFVS 359 (740)
Q Consensus 341 ~~~~gwlg~~l~~nl~flS 359 (740)
.+-.-|...++..-.+|+|
T Consensus 424 ~~~~~~~~~~~~~~~~fls 442 (700)
T COG1480 424 AFTLSWYDALQDAIFAFLS 442 (700)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 3444566555555555544
No 136
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=59.93 E-value=2.9 Score=45.53 Aligned_cols=39 Identities=15% Similarity=0.330 Sum_probs=0.0
Q ss_pred HHHhhhheeeeeeeehhhHHHHHh--hhhhhhHHHHHHHHh
Q 004646 330 FITTMYSIYCAWTYVGWLGLLLAL--NLSFVSSDALIFFLK 368 (740)
Q Consensus 330 ~~~~~y~~yc~~~~~gwlg~~l~~--nl~flS~diL~~llq 368 (740)
+++.+.+|.-+-.+-+|+.+++-+ .+-||-.-|+.|+-.
T Consensus 147 ~LaivlLIIAv~L~qaWfT~L~dL~WL~LFlaiLIWlY~H~ 187 (381)
T PF05297_consen 147 LLAIVLLIIAVLLHQAWFTILVDLYWLLLFLAILIWLYVHD 187 (381)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344445555555678999887643 345777666666543
No 137
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=59.63 E-value=37 Score=35.35 Aligned_cols=14 Identities=29% Similarity=0.714 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 004646 255 CSILSVIAMVGMFK 268 (740)
Q Consensus 255 ~~~~~~~~m~~~~~ 268 (740)
-+||.+++.+|++.
T Consensus 16 G~~f~ligaIGLlR 29 (197)
T PRK12585 16 GGLLSILAAIGVIR 29 (197)
T ss_pred HHHHHHHHHHHHHh
Confidence 34444445454443
No 138
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=58.54 E-value=1.9e+02 Score=34.88 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=14.8
Q ss_pred hhhccchhHHHHHHhhhhee
Q 004646 319 AFKFTHERLALFITTMYSIY 338 (740)
Q Consensus 319 ~f~l~~~~~~~~~~~~y~~y 338 (740)
++.|.|+-++..+..|-.+.
T Consensus 561 AlgLa~~~ia~~~n~la~~~ 580 (646)
T PRK05771 561 ALGLAGAGIAMAFNLMAGLL 580 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56788888888877765554
No 139
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.90 E-value=1.2e+02 Score=35.73 Aligned_cols=49 Identities=27% Similarity=0.317 Sum_probs=35.5
Q ss_pred cccccch---hhhhhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHhcCc
Q 004646 140 GLGWSLN---RVHLKNMMEKVKLSVNVVVRSLRVYVVPTLKAAIELLERQSP 188 (740)
Q Consensus 140 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (740)
++.+.|| +|.+++..-+.+.-.|+++|.-=...+-++-|....|..+++
T Consensus 269 gl~yspDC~v~l~l~ntkg~~~vl~n~aVr~tll~~~~~~~~~~~Ll~q~~~ 320 (636)
T KOG0828|consen 269 GLVYSPDCFVPLTLNNTKGNVEVLYNKAVRYTLLYIFIVLSQIFLLLRQMRI 320 (636)
T ss_pred CcccCCCcCcceeeeccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455554 577788888899999999998776666677676666666443
No 140
>PHA03239 envelope glycoprotein M; Provisional
Probab=57.45 E-value=65 Score=37.29 Aligned_cols=56 Identities=9% Similarity=0.066 Sum_probs=51.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 004646 246 TTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLW 301 (740)
Q Consensus 246 ~~~~~~~~w~~~~~~~~m~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw 301 (740)
.+||++-.|-..+..+.+..++-++..+++=.++.+|+-.-+|..+=.++|..|||
T Consensus 254 gNsF~v~~~~~v~~ai~~F~vL~iiyliv~E~vL~~Yv~vl~G~~lG~lia~~iL~ 309 (429)
T PHA03239 254 ALHFGLDIPKATSGALSMFIVLGIIYLMMAELTVAHYVHVLIGPHLGMIIACAIAG 309 (429)
T ss_pred hcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999988899999999
No 141
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=55.72 E-value=38 Score=40.10 Aligned_cols=14 Identities=14% Similarity=0.261 Sum_probs=6.3
Q ss_pred HHH-HHHHHHHHHHH
Q 004646 214 NHL-GHFAKIMLLLS 227 (740)
Q Consensus 214 ~~~-~~~~~~~~~~~ 227 (740)
||. ..+-+++.|+.
T Consensus 369 RWinSTi~Nl~eLl~ 383 (527)
T PF03142_consen 369 RWINSTIHNLFELLL 383 (527)
T ss_pred hccchhHhhHhHHHH
Confidence 443 33445554443
No 142
>PF13446 RPT: A repeated domain in UCH-protein
Probab=55.27 E-value=19 Score=30.06 Aligned_cols=26 Identities=19% Similarity=0.478 Sum_probs=23.0
Q ss_pred CcccccCcccCCCCCHHHHHHHHHHHHH
Q 004646 441 DHYSALGLSRFENVDVSILKREYRKKAM 468 (740)
Q Consensus 441 d~YeILGV~~~~~As~~eIKKAYRkLAl 468 (740)
+-|++|||++ +.+.+.|-.+|+....
T Consensus 6 ~Ay~~Lgi~~--~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDE--DTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCC--CCCHHHHHHHHHHHHH
Confidence 4599999988 7899999999999776
No 143
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=55.19 E-value=21 Score=38.38 Aligned_cols=20 Identities=5% Similarity=0.017 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHhCCCCC
Q 004646 456 VSILKREYRKKAMLVHPDKN 475 (740)
Q Consensus 456 ~~eIKKAYRkLAlk~HPDKn 475 (740)
++++.+++..+...+++...
T Consensus 155 ~~~~~~~~~~~~~E~~g~~~ 174 (301)
T PF14362_consen 155 EKEIDRAQQEAQCEIFGTGG 174 (301)
T ss_pred HHHHHHHHHHHHHhhcCCCC
Confidence 56788888888888888744
No 144
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=54.63 E-value=11 Score=46.57 Aligned_cols=43 Identities=23% Similarity=0.556 Sum_probs=26.7
Q ss_pred ccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCCCCccccceeEEEEEEc
Q 004646 577 WCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQGMRCPANTHKPSFHVN 648 (740)
Q Consensus 577 ~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~CqG~G~v~~t~~vsV~IP 648 (740)
.|..|+ |+|++.+..+ |+|.. -.| |..|+|.++-.+ +++|+..
T Consensus 732 RCe~C~-------GdG~ikIeM~-FLpdV----yv~---------------CevC~GkRYn~E--tLev~yk 774 (935)
T COG0178 732 RCEACQ-------GDGVIKIEMH-FLPDV----YVP---------------CEVCHGKRYNRE--TLEVKYK 774 (935)
T ss_pred CCcccc-------CCceEEEEec-cCCCc----eee---------------CCCcCCcccccc--eEEEEEC
Confidence 488998 9998887543 44433 233 557777765444 5555554
No 145
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.99 E-value=6.4 Score=49.19 Aligned_cols=16 Identities=31% Similarity=0.819 Sum_probs=13.1
Q ss_pred cccccccccccccCCCceEEeee
Q 004646 576 RWCQECNDYHQAKDGDGWVEQSS 598 (740)
Q Consensus 576 r~C~sCk~~H~akdG~G~Ve~~~ 598 (740)
-.|+.|+ |.|++....
T Consensus 737 G~C~~C~-------G~G~~~~~~ 752 (924)
T TIGR00630 737 GRCEACQ-------GDGVIKIEM 752 (924)
T ss_pred CCCCCCc-------cceEEEEEc
Confidence 4599999 999988743
No 146
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=53.33 E-value=48 Score=33.86 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=18.0
Q ss_pred HhhhhhhHHHHHHHHHHHHHHhh
Q 004646 282 FIGFALALVVVALSGTILLWLYG 304 (740)
Q Consensus 282 ~~g~~~~~~iv~~~~~~ilw~~~ 304 (740)
-++++.++.++++..+++-|+|-
T Consensus 115 ~~~~~~~Pi~~~~~i~~~~w~~r 137 (186)
T PF12036_consen 115 SLWNTIGPILIGLLILLVSWLYR 137 (186)
T ss_pred cchhhHHHHHHHHHHHHHHHhee
Confidence 45677888888888888888876
No 147
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=52.96 E-value=29 Score=37.41 Aligned_cols=11 Identities=18% Similarity=0.304 Sum_probs=6.2
Q ss_pred eeeeeeeehhhH
Q 004646 337 IYCAWTYVGWLG 348 (740)
Q Consensus 337 ~yc~~~~~gwlg 348 (740)
.||.. |+||+|
T Consensus 96 Gw~~g-rfGlFg 106 (254)
T PF07857_consen 96 GWASG-RFGLFG 106 (254)
T ss_pred HHHHh-hceecc
Confidence 34443 667766
No 148
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=52.58 E-value=2.5e+02 Score=27.99 Aligned_cols=58 Identities=19% Similarity=0.266 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhhhc
Q 004646 265 GMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKF 322 (740)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~f~~t~~~~i~g~~~f~l 322 (740)
...|+.++...+.++..++|...|++..-+.++++.-+..+-+...++.++++.+..+
T Consensus 62 ~~~~~~P~a~~~~l~~~l~~~~~ai~~~~~~sl~~~~~~~~~~~~~~~~l~~~~~~~~ 119 (194)
T PF07698_consen 62 YFPYLIPVAAAAMLLTILIDPRLAILASLFLSLLASLLFGFDFEFFLYSLVSGIVAIF 119 (194)
T ss_pred hhhhhhHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 3578888899999999999999999988887777776765555556666666654433
No 149
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=51.52 E-value=1.7e+02 Score=28.82 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=17.4
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhH
Q 004646 284 GFALALVVVALSGTILLWLYGSFWTT 309 (740)
Q Consensus 284 g~~~~~~iv~~~~~~ilw~~~~f~~t 309 (740)
|-..+...=.+++.+++|+.+..++.
T Consensus 57 gN~~AtiaD~~La~~~iW~~~~~~~~ 82 (136)
T PF10710_consen 57 GNIVATIADFGLAFLVIWLMGYILTG 82 (136)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444444456677888888888776
No 150
>PF13994 PgaD: PgaD-like protein
Probab=51.22 E-value=51 Score=32.01 Aligned_cols=20 Identities=10% Similarity=0.213 Sum_probs=15.7
Q ss_pred hcchhhHHHHHHHHHHHHHH
Q 004646 243 RMGTTSFFSVIWCSILSVIA 262 (740)
Q Consensus 243 ~~g~~~~~~~~w~~~~~~~~ 262 (740)
|+....+-+++|+.|+.++.
T Consensus 14 r~~~~~lT~~~W~~~~yL~~ 33 (138)
T PF13994_consen 14 RLIDYFLTLLFWGGFIYLWR 33 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67777888899998877655
No 151
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=50.62 E-value=73 Score=37.58 Aligned_cols=18 Identities=11% Similarity=0.407 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 004646 248 SFFSVIWCSILSVIAMVG 265 (740)
Q Consensus 248 ~~~~~~w~~~~~~~~m~~ 265 (740)
++++++|+.++.+++..+
T Consensus 50 ~~~~~~~~~~~~~~~l~~ 67 (522)
T PRK09598 50 MLVVLLFCVNGLLFLLLG 67 (522)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555544443
No 152
>PLN02922 prenyltransferase
Probab=50.32 E-value=63 Score=35.65 Aligned_cols=18 Identities=6% Similarity=0.351 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 004646 287 LALVVVALSGTILLWLYG 304 (740)
Q Consensus 287 ~~~~iv~~~~~~ilw~~~ 304 (740)
+.++++|++|+++-|+|.
T Consensus 123 ~~~l~iG~~g~~~~~~Yt 140 (315)
T PLN02922 123 IRVILLLAAAILCGYVYQ 140 (315)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 567888999999999995
No 153
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=49.33 E-value=75 Score=34.53 Aligned_cols=29 Identities=10% Similarity=0.164 Sum_probs=19.2
Q ss_pred HHHHHHHhhhh--hhHHHHHHHHHHHHHHhh
Q 004646 276 AALVAFFIGFA--LALVVVALSGTILLWLYG 304 (740)
Q Consensus 276 ~~~~~~~~g~~--~~~~iv~~~~~~ilw~~~ 304 (740)
+++++.++.+. +.++++|++|+++-|+|.
T Consensus 93 a~~~g~~L~~~~~~~~l~lg~~g~~~~~~Yt 123 (285)
T TIGR02235 93 GLVGIAALSWRWQITVLALVGLCCFLGYLYQ 123 (285)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence 33333444333 446788999999999995
No 154
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.86 E-value=30 Score=38.92 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhh
Q 004646 274 VVAALVAFFIGFALALVVVALSGTILLWLYGS 305 (740)
Q Consensus 274 ~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~ 305 (740)
++++++++| ..|.||=++...|.|+...
T Consensus 224 g~~gfl~~I----lvLaIvRlILF~I~~il~~ 251 (372)
T KOG2927|consen 224 GAGGFLAFI----LVLAIVRLILFGITWILTG 251 (372)
T ss_pred chhHHHHHH----HHHHHHHHHHHHHHHHHhC
Confidence 666666655 5566666655666665433
No 155
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=48.76 E-value=27 Score=36.10 Aligned_cols=38 Identities=11% Similarity=0.259 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhhh
Q 004646 453 NVDVSILKREYRKKAMLVHPDKNMGNEKAVEAFKKLQNAYEVLFDS 498 (740)
Q Consensus 453 ~As~~eIKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~eAYeVLsDp 498 (740)
+|+.|||.+|+.++..+|- +|+ +.-.+|..||+.+.-.
T Consensus 3 ~ASfeEIq~Arn~ll~~y~-----gd~---~~~~~IEaAYD~ILM~ 40 (194)
T PF11833_consen 3 DASFEEIQAARNRLLAQYA-----GDE---KSREAIEAAYDAILME 40 (194)
T ss_pred CCCHHHHHHHHHHHHHHhc-----CCH---HHHHHHHHHHHHHHHH
Confidence 7999999999999999992 232 4556799999855433
No 156
>TIGR00947 2A73 probable bicarbonate transporter, IctB family. This family of proteins is suggested to transport inorganic carbon (HCO3-), based on the phenotype of a mutant of IctB in Synechococcus sp. strain PCC 7942. Bicarbonate uptake is used by many photosynthetic organisms including cyanobacteria. These organisms are able to concentrate CO2/HCO3- against a greater than ten-fold concentration gradient. Cyanobacteria may have several such carriers operating with different efficiencies. Note that homology to various O-antigen ligases, with possible implications for mutant cell envelope structure, might allow alternatives to the interpretation of IctB as a bicarbonate transport protein.
Probab=48.09 E-value=2.3e+02 Score=32.40 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=16.3
Q ss_pred HHhhhheeeeeeeehhhHHHHHh
Q 004646 331 ITTMYSIYCAWTYVGWLGLLLAL 353 (740)
Q Consensus 331 ~~~~y~~yc~~~~~gwlg~~l~~ 353 (740)
+....+++-..+|.+|+|++.++
T Consensus 206 ~l~~~~L~lT~SRg~wl~l~~~~ 228 (425)
T TIGR00947 206 GVNALCLLFTYSRGGWLGLLAAL 228 (425)
T ss_pred HHHHHHHHHhcchhhHHHHHHHH
Confidence 34456777788899998876544
No 157
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=47.62 E-value=1.5e+02 Score=36.40 Aligned_cols=20 Identities=25% Similarity=0.539 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004646 250 FSVIWCSILSVIAMVGMFKF 269 (740)
Q Consensus 250 ~~~~w~~~~~~~~m~~~~~~ 269 (740)
|=.||-|.|.|-+++=.++.
T Consensus 51 ~e~~~p~wl~~~~~~~~~~~ 70 (697)
T PF09726_consen 51 FEYLWPFWLLLRSVYDSFKY 70 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 66789998888888766654
No 158
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=46.21 E-value=5.6e+02 Score=33.34 Aligned_cols=35 Identities=9% Similarity=0.123 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHH-------hCCCCCCCcHHHHHHHHHHHHHHH
Q 004646 456 VSILKREYRKKAML-------VHPDKNMGNEKAVEAFKKLQNAYE 493 (740)
Q Consensus 456 ~~eIKKAYRkLAlk-------~HPDKn~~~p~A~e~Fk~I~eAYe 493 (740)
...+|++.++..+. -|||-. ++..+..++|+++|-
T Consensus 356 ~~~lR~a~nra~r~G~t~~i~~~~~~~---~~~~~~L~~isd~Wl 397 (1094)
T PRK02983 356 MRPVRQAVTRVRRAGYTVRIRRHRDLP---AEEMAQVIARADAWR 397 (1094)
T ss_pred hHHHHHHHHHHHhCCCEEEEeeCCCCC---HHHHHHHHHHHHHHh
Confidence 36788888886654 144432 445566888888884
No 159
>PRK10726 hypothetical protein; Provisional
Probab=46.19 E-value=81 Score=29.89 Aligned_cols=63 Identities=22% Similarity=0.437 Sum_probs=34.5
Q ss_pred hhhcchhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhh
Q 004646 241 FMRMGTTS--FFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYG 304 (740)
Q Consensus 241 ~~~~g~~~--~~~~~w~~~~~~~~m~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~ 304 (740)
|+=.|++. ||+-.|=.||.+.-.+-++-+++....-+=+...+..| ++.++++|+++.+|+-|
T Consensus 40 fl~YG~nTlfF~LYTWPFFLALmPvsVlvGi~l~~Ll~g~l~~s~l~t-~l~V~~lFwllF~~L~G 104 (105)
T PRK10726 40 FLIYGSNTLFFFLYTWPFFLALMPVSVLVGIALHSLLRGKLLYSILFT-LLTVGCLFWLLFSWLLG 104 (105)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccchhHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 33345544 55667999998876554444444443333333333332 45666777777666643
No 160
>PF01098 FTSW_RODA_SPOVE: Cell cycle protein; InterPro: IPR001182 A number of prokaryotic integral membrane proteins involved in cell cycle processes have been found to be structurally related [, ]. These proteins include, the Escherichia coli and related bacteria cell division protein ftsW and the rod shape-determining protein rodA (or mrdB), the Bacillus subtilis stage V sporulation protein E (spoVE), the B. subtilis hypothetical proteins ywcF and ylaO and the Cyanophora paradoxa cyanelle ftsW homolog.; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=46.17 E-value=94 Score=34.36 Aligned_cols=34 Identities=24% Similarity=0.521 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHh-hhhhhcchhhhhhcchhh
Q 004646 215 HLGHFAKIMLLLSMLW-LDCTIRGIDSFMRMGTTS 248 (740)
Q Consensus 215 ~~~~~~~~~~~~~~~w-~~~~~rg~~~~~~~g~~~ 248 (740)
+.+..+.+++|++... ..-.+.|-.+.+++|.-+
T Consensus 67 ~~~~~~~l~lL~l~~~~~g~~v~Ga~rWi~lG~~s 101 (358)
T PF01098_consen 67 KILYLGSLILLLLVLFPFGTEVNGARRWIRLGGFS 101 (358)
T ss_pred HHhhHHHHHHHHHHHcccccccCCceEEEEeeeec
Confidence 3445677788888878 899999999999999644
No 161
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=45.60 E-value=2.9e+02 Score=33.13 Aligned_cols=24 Identities=13% Similarity=0.328 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHH
Q 004646 268 KFLMVLVVAALVAFFIGFALALVV 291 (740)
Q Consensus 268 ~~l~~~~~~~~~~~~~g~~~~~~i 291 (740)
-++.+++++++++.|.++.-++++
T Consensus 72 ~~~~~l~l~sa~asy~~~~y~i~~ 95 (555)
T COG2194 72 PLAGVLSLVSAAASYFAYFYGIII 95 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Confidence 344556677777888888777775
No 162
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=45.58 E-value=1.3e+02 Score=30.71 Aligned_cols=31 Identities=23% Similarity=0.670 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHhhhhh
Q 004646 288 ALVVVALSGTILLWLYGSFWTTFFVIFLGGL 318 (740)
Q Consensus 288 ~~~iv~~~~~~ilw~~~~f~~t~~~~i~g~~ 318 (740)
.++|.+++--++..+-|.+|......+++|+
T Consensus 62 ~~~i~~~i~gl~~~~~G~~~~~~~~~ii~gl 92 (189)
T TIGR02185 62 VIFIFGILLGLLFFLMGMYWPMIISSIIGGL 92 (189)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4555565555566677778877766666664
No 163
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=45.38 E-value=43 Score=37.44 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 004646 263 MVGMFKFLMVLVVAALVAFFIGFALA 288 (740)
Q Consensus 263 m~~~~~~l~~~~~~~~~~~~~g~~~~ 288 (740)
|+.++.++++++++++++.++-..+|
T Consensus 1 M~~~~~~~~~~~~~~~~~~~~~~~~G 26 (409)
T TIGR00540 1 MFKVLFLFLLLIAGIVAGPMIAGHQG 26 (409)
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45555556666666666666666665
No 164
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=45.33 E-value=15 Score=28.58 Aligned_cols=31 Identities=19% Similarity=0.487 Sum_probs=21.0
Q ss_pred cccccccccccceeeeeccCccccccccccc
Q 004646 552 RRIACKKCNNFHVWIETKKSKASARWCQECN 582 (740)
Q Consensus 552 R~ViC~kC~GsG~~~~t~r~~skar~C~sCk 582 (740)
+..+|+.|.|+..+....+.....-.|..|.
T Consensus 2 ~~~pCP~CGG~DrFr~~d~~g~G~~~C~~Cg 32 (37)
T smart00778 2 RHGPCPNCGGSDRFRFDDKDGRGTWFCSVCG 32 (37)
T ss_pred CccCCCCCCCccccccccCCCCcCEEeCCCC
Confidence 3568999988765554444445566788886
No 165
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=45.20 E-value=19 Score=38.27 Aligned_cols=17 Identities=29% Similarity=0.508 Sum_probs=9.9
Q ss_pred hhheeeeeeeehhhHHHH
Q 004646 334 MYSIYCAWTYVGWLGLLL 351 (740)
Q Consensus 334 ~y~~yc~~~~~gwlg~~l 351 (740)
+|..|-+- |+.|+|++.
T Consensus 202 wyi~Y~vP-Y~~~ig~~i 218 (230)
T PF03904_consen 202 WYIAYLVP-YIFAIGLFI 218 (230)
T ss_pred HHHHHhhH-HHHHHHHHH
Confidence 34444444 666777775
No 166
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=45.17 E-value=1.1e+02 Score=36.90 Aligned_cols=73 Identities=22% Similarity=0.388 Sum_probs=46.0
Q ss_pred hcchhhhhhc---------chhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--------hhhhhhHHHHHH
Q 004646 235 IRGIDSFMRM---------GTTSFFSVIWCSILSVIA---MVGMFKFLMVLVVAALVAFF--------IGFALALVVVAL 294 (740)
Q Consensus 235 ~rg~~~~~~~---------g~~~~~~~~w~~~~~~~~---m~~~~~~l~~~~~~~~~~~~--------~g~~~~~~iv~~ 294 (740)
+|.|++++.| =+|.|+.++++.|+.+.- =+|++.+| ++.++... -.+..-+++.|+
T Consensus 326 ~~pFE~lv~mYg~P~Y~EiDPT~~~ai~f~lfFGmM~gD~GyGLil~l----~~~~l~~~~~k~~~~~~~~~~il~~~gi 401 (646)
T PRK05771 326 IKPFESLTEMYSLPKYNEIDPTPFLAIFFPLFFGMMLGDAGYGLLLLL----IGLLLSFKLKKKSEGLKRLLKILIYLGI 401 (646)
T ss_pred hhhHHHHHHHcCCCCCCCcCCccHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 5667777664 578899999988887752 23333333 22222211 123344577888
Q ss_pred HHHHHHHHhhhhhhHHH
Q 004646 295 SGTILLWLYGSFWTTFF 311 (740)
Q Consensus 295 ~~~~ilw~~~~f~~t~~ 311 (740)
++++.=+|||+||...+
T Consensus 402 ~sii~G~lyG~fFG~~~ 418 (646)
T PRK05771 402 STIIWGLLTGSFFGFSL 418 (646)
T ss_pred HHHHHHHHHHhHhcCcc
Confidence 88888899999987554
No 167
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=43.86 E-value=88 Score=33.97 Aligned_cols=17 Identities=6% Similarity=-0.029 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHhh
Q 004646 288 ALVVVALSGTILLWLYG 304 (740)
Q Consensus 288 ~~~iv~~~~~~ilw~~~ 304 (740)
.++++|+.|+++.|.|.
T Consensus 110 ~~l~lg~~~~~~~~~Yt 126 (284)
T TIGR00751 110 WFIALGALCIAAAITYT 126 (284)
T ss_pred HHHHHHHHHHHHhHhhc
Confidence 46788999999999996
No 168
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=43.80 E-value=61 Score=34.70 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 004646 479 EKAVEAFKKLQNAYEVLFDS 498 (740)
Q Consensus 479 p~A~e~Fk~I~eAYeVLsDp 498 (740)
+.-...++++.++.+.+-+.
T Consensus 239 ~~l~~~l~~l~~~l~~~~~~ 258 (284)
T PF12805_consen 239 NRLKRALEALEESLEFLRQQ 258 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 44556677777777666544
No 169
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=43.68 E-value=86 Score=36.34 Aligned_cols=17 Identities=24% Similarity=0.624 Sum_probs=13.7
Q ss_pred HHHHHHHhhhhhhHHHH
Q 004646 296 GTILLWLYGSFWTTFFV 312 (740)
Q Consensus 296 ~~~ilw~~~~f~~t~~~ 312 (740)
||++-|+.+++|+++==
T Consensus 250 allLYWv~snlwtl~Qq 266 (429)
T PRK00247 250 AIALYWVANNLWTLIQN 266 (429)
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 68889999999986543
No 170
>PRK13706 conjugal transfer pilus acetylation protein TraX; Provisional
Probab=43.07 E-value=4.5e+02 Score=28.55 Aligned_cols=100 Identities=13% Similarity=-0.001 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcch----------hhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004646 214 NHLGHFAKIMLLLSMLWLDCTIRGI----------DSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFI 283 (740)
Q Consensus 214 ~~~~~~~~~~~~~~~~w~~~~~rg~----------~~~~~~g~~~~~~~~w~~~~~~~~m~~~~~~l~~~~~~~~~~~~~ 283 (740)
.|+-.+||+..=++.+ +.|| .-..||.--++++-+=-.++ .+......++..|.++..+...+
T Consensus 58 ~~l~~iGRlAfPiFaf-----VeGfNla~hT~~r~kY~~RL~ifAlIseipf~l~--~~~~~~~NI~fTLalgl~~l~~~ 130 (248)
T PRK13706 58 EWMFLAGRGAFPLFAL-----VWGLNLSRHAHIRQPAINRLWGWGIIAQFAYYLA--GFPWYEGNILFAFAVAAQVLTWC 130 (248)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHH--hcccccCcHHHHHHHHHHHHHHH
Confidence 4677889988777765 8887 34566655544432110000 11122224555555554444444
Q ss_pred hhhhhHHHHHHHHHHHHHH--h-hhhhhHHHHHhhhhhhh
Q 004646 284 GFALALVVVALSGTILLWL--Y-GSFWTTFFVIFLGGLAF 320 (740)
Q Consensus 284 g~~~~~~iv~~~~~~ilw~--~-~~f~~t~~~~i~g~~~f 320 (740)
-.....+.++++.+.++|. . +..+.-++++|++-+.|
T Consensus 131 e~~~~~~~~~~il~~~l~~~~~~~DYg~~gvl~il~fy~~ 170 (248)
T PRK13706 131 ETRSGWRTAAAILLMALWGPLSGTSYGIAGLLMLAVSHRL 170 (248)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3321111111111223332 2 33455577777776654
No 171
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=42.91 E-value=19 Score=39.27 Aligned_cols=51 Identities=22% Similarity=0.503 Sum_probs=32.3
Q ss_pred cccccccccceeeeeccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCC
Q 004646 554 IACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQ 632 (740)
Q Consensus 554 ViC~kC~GsG~~~~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~Cq 632 (740)
-.|..|.|.+ -..|..|+ |+=.+.....+ .+.+ ..|. .|++.|.+. |+.|.
T Consensus 230 ~~C~~CGg~r-----------FlpC~~C~-------GS~kv~~~~~~--~~~~----~rC~-~CNENGLvr---Cp~Cs 280 (281)
T KOG2824|consen 230 GVCESCGGAR-----------FLPCSNCH-------GSCKVHEEEED--DGGV----LRCL-ECNENGLVR---CPVCS 280 (281)
T ss_pred CcCCCcCCcc-----------eEecCCCC-------CceeeeeeccC--CCcE----EECc-ccCCCCcee---CCccC
Confidence 5688898865 35799998 76655441111 1222 2499 899999854 66664
No 172
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=42.90 E-value=53 Score=36.70 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 004646 263 MVGMFKFLMVLVVAALVAFFIGFALA 288 (740)
Q Consensus 263 m~~~~~~l~~~~~~~~~~~~~g~~~~ 288 (740)
|.-++.++++|+++++++.++-..+|
T Consensus 1 M~r~l~~~~~l~~~~~~~~~~~~~~G 26 (398)
T PRK10747 1 MLKVLLLFVLLIAGIVVGPMIAGHQG 26 (398)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 44455556666666666666654443
No 173
>TIGR01654 bact_immun_7tm bacteriocin-associated integral membrane (putative immunity) protein. This model represents a family of integral membrane proteins, most of which are about 650 residues in size and predicted to span the membrane seven times. Nearly half of the members of this family are found in association with a member of the lactococcin 972 family of bacteriocins (TIGR01653). Others may be associated with uncharacterized proteins that may also act as bacteriocins. Although this protein is suggested to be an immunity protein, and the bacteriocin is suggested to be exported by a Sec-dependent process, the role of this protein is unclear.
Probab=42.83 E-value=2.1e+02 Score=34.68 Aligned_cols=73 Identities=14% Similarity=0.327 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHH-HHHHHhhhhhhcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004646 212 ALNHLGHFAKIML-LLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFA 286 (740)
Q Consensus 212 ~~~~~~~~~~~~~-~~~~~w~~~~~rg~~~~~~~g~~~~~~~~w~~~~~~~~m~~~~~~l~~~~~~~~~~~~~g~~ 286 (740)
.+..+.-|.-..+ ++.++|.--..|=. +.-||=--+.+-|+|-.+.- ....+++.++++++++.++.++.|++
T Consensus 168 ~~~~l~~~~i~~~~~l~v~~~~~~~K~~-gI~rL~G~s~~~I~~~~l~~-~~~~~~l~~l~~~i~~~~~~~~~~~~ 241 (679)
T TIGR01654 168 ILVILALLLIVIFVLFLIYYLMINMKRV-AIYRLNGFSLRKILFRLFSK-NCTYLLISALLILLLSSFLLFIKGYT 241 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 3334444444444 55556655444422 23344445666676666553 33344456666666677777778877
No 174
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=42.53 E-value=4e+02 Score=29.18 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=10.0
Q ss_pred eeeeeeeehhhHHHHHhhh
Q 004646 337 IYCAWTYVGWLGLLLALNL 355 (740)
Q Consensus 337 ~yc~~~~~gwlg~~l~~nl 355 (740)
+.|...+.+.+|+.+...+
T Consensus 99 ~~~~~~N~~~lglpi~~~l 117 (385)
T PF03547_consen 99 LAASFGNTGFLGLPILQAL 117 (385)
T ss_pred ecccCCcchhhHHHHHHHH
Confidence 3344455566666555544
No 175
>PRK10490 sensor protein KdpD; Provisional
Probab=42.17 E-value=66 Score=40.21 Aligned_cols=35 Identities=29% Similarity=0.245 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhh
Q 004646 265 GMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYG 304 (740)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~ 304 (740)
.|+|+|.++++|. +.|+.+|++- +++++++.|+++
T Consensus 429 ~mlyll~Vll~A~----~~G~~pai~a-avls~l~~nfFF 463 (895)
T PRK10490 429 VMLYLLGVVVVAL----FYGRWPSVVA-TVINVASFDLFF 463 (895)
T ss_pred HHHHHHHHHHHHH----HhchHHHHHH-HHHHHHHHHhee
Confidence 3444444443333 3488887765 566666666543
No 176
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=41.95 E-value=1.3e+02 Score=32.42 Aligned_cols=46 Identities=11% Similarity=0.230 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHh
Q 004646 269 FLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIF 314 (740)
Q Consensus 269 ~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~f~~t~~~~i 314 (740)
+-++..+.-.+...+...|.+++++++..++.-.+..+|+.+++-+
T Consensus 24 I~~a~~vlk~A~~~l~~~p~l~~~p~~~~~~~~~~~~~w~~~~~~l 69 (334)
T PF04515_consen 24 IPFAIAVLKVASKALRSNPSLLLVPIITFIVQLVFFVLWIIVVLYL 69 (334)
T ss_pred HHHHHHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566777888999999999999999999999998777633
No 177
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=41.86 E-value=48 Score=37.93 Aligned_cols=46 Identities=24% Similarity=0.497 Sum_probs=28.6
Q ss_pred hhh-hcchhhhhhc--chhhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Q 004646 232 DCT-IRGIDSFMRM--GTTSFFSVIWCSILSVIA----------MVGMFKFLMVLVVAA 277 (740)
Q Consensus 232 ~~~-~rg~~~~~~~--g~~~~~~~~w~~~~~~~~----------m~~~~~~l~~~~~~~ 277 (740)
||- .=|++++.|+ |.++||+++=..++.+-+ -.+.+|+++-+++..
T Consensus 68 ~c~~~~gy~AVyR~~f~~a~Ff~~lsllm~gVkss~D~R~~iqng~W~fK~i~~~~l~i 126 (426)
T KOG2592|consen 68 DCGKLLGYKAVYRLCFGLACFFLLLSLLMIGVKSSKDPRAAIQNGFWFFKFILWFGLIV 126 (426)
T ss_pred CcccchhhhHHHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHcCcHHHHHHHHHHHHH
Confidence 776 7788888885 777777766544444332 135667766655543
No 178
>PRK01637 hypothetical protein; Reviewed
Probab=41.82 E-value=1.6e+02 Score=31.74 Aligned_cols=8 Identities=38% Similarity=0.509 Sum_probs=3.5
Q ss_pred HHHHhhhh
Q 004646 299 LLWLYGSF 306 (740)
Q Consensus 299 ilw~~~~f 306 (740)
++|..++.
T Consensus 213 ~~w~~~~~ 220 (286)
T PRK01637 213 LLFELGKK 220 (286)
T ss_pred HHHHHHHH
Confidence 44444443
No 179
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=41.64 E-value=40 Score=37.25 Aligned_cols=17 Identities=24% Similarity=0.800 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q 004646 248 SFFSVIWCSILSVIAMV 264 (740)
Q Consensus 248 ~~~~~~w~~~~~~~~m~ 264 (740)
-||+||||.++|-..|+
T Consensus 72 I~yivlw~~l~Stl~l~ 88 (308)
T PF14800_consen 72 IFYIVLWANLYSTLQLF 88 (308)
T ss_pred HHHHHHHHHHHccchhh
Confidence 46899999999977665
No 180
>KOG3618 consensus Adenylyl cyclase [General function prediction only]
Probab=41.35 E-value=2e+02 Score=35.96 Aligned_cols=60 Identities=17% Similarity=0.295 Sum_probs=34.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004646 204 KVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLM 271 (740)
Q Consensus 204 ~~~~~~p~~~~~~~~~~~~~~~~~~~w~~~~~rg~~~~~~~g~~~~~~~~w~~~~~~~~m~~~~~~l~ 271 (740)
-.++.||-+.+-.-.....+++....|-=-. .+-+++- |.+||..-||+.|.+|+.+++.
T Consensus 69 y~~~~Fpq~r~RfR~~L~YI~~~~l~W~lYf------av~~rs~--fi~~~~~slc~lslv~~mf~~f 128 (1318)
T KOG3618|consen 69 YLERCFPQTRRRFRYALFYIGFACLLWSLYF------AVHMRSR--FIVMVAPSLCFLSLVCVMFFLF 128 (1318)
T ss_pred HHHhhCHHHHHHHHHHHHHHHHHHHHHHHHh------eeccCce--eeeehHHHHHHHHHHHHHHHHH
Confidence 3456667666555444445555556663211 1233444 7788888888888777665543
No 181
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=41.33 E-value=98 Score=34.03 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 004646 287 LALVVVALSGTILLWLYG 304 (740)
Q Consensus 287 ~~~~iv~~~~~~ilw~~~ 304 (740)
+-++++|++|+++-|+|.
T Consensus 119 ~~~l~ig~~g~~~~~~YT 136 (304)
T PRK07419 119 WTVLGLVLLCCFLGYLYQ 136 (304)
T ss_pred HHHHHHHHHHHHHhhecc
Confidence 556788889999999994
No 182
>TIGR02755 TraX_Ftype type-F conjugative transfer system pilin acetylase TraX. TraX is responsible for the acetylation of the F-pilin TraA during conjugative plasmid transfer. The purpose of this acetylation is unclear, but the reported transcriptional regulation of TraX may indicate that it is involved in the process of pilu extension/retraction.
Probab=41.25 E-value=3e+02 Score=29.40 Aligned_cols=20 Identities=15% Similarity=0.044 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcch
Q 004646 214 NHLGHFAKIMLLLSMLWLDCTIRGI 238 (740)
Q Consensus 214 ~~~~~~~~~~~~~~~~w~~~~~rg~ 238 (740)
.|+-..||+..=++. .+.||
T Consensus 34 ~~l~~iGR~AfPiF~-----lveGf 53 (224)
T TIGR02755 34 EWLFLAGRGAFPLFA-----LVWGL 53 (224)
T ss_pred HHHHHHHHHHHHHHH-----HHHHH
Confidence 477778888776664 67777
No 183
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=41.10 E-value=4.4e+02 Score=33.79 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=16.3
Q ss_pred eehhhHHHHHhhhhhhhHHHHHHHHhhhcc
Q 004646 343 YVGWLGLLLALNLSFVSSDALIFFLKSKVN 372 (740)
Q Consensus 343 ~~gwlg~~l~~nl~flS~diL~~llq~~~~ 372 (740)
-..||.+++..=++.+. |++..++++...
T Consensus 1020 ~~f~l~~ll~~~~~l~p-~~~~~~~~~~~~ 1048 (1057)
T TIGR01652 1020 FGFWLVLLVIVLISLLP-RFTYKAIQRLFR 1048 (1057)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHcC
Confidence 34677777766666554 344455554433
No 184
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=40.75 E-value=1.6e+02 Score=36.05 Aligned_cols=11 Identities=0% Similarity=-0.009 Sum_probs=5.0
Q ss_pred hhhhHHHHHhh
Q 004646 305 SFWTTFFVIFL 315 (740)
Q Consensus 305 ~f~~t~~~~i~ 315 (740)
++|++.+.++-
T Consensus 376 ~~~~~~~~l~s 386 (700)
T COG1480 376 NSEIALIALLS 386 (700)
T ss_pred hHHHHHHHHHH
Confidence 34454444443
No 185
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.35 E-value=15 Score=45.99 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=19.7
Q ss_pred CCCccc-ccccccccccceeeeecc-Cccccccccccc
Q 004646 547 PFGESR-RIACKKCNNFHVWIETKK-SKASARWCQECN 582 (740)
Q Consensus 547 ~f~isR-~ViC~kC~GsG~~~~t~r-~~skar~C~sCk 582 (740)
.|+++. .-.|+.|.|.|....... -..-...|+.|+
T Consensus 729 ~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~ 766 (924)
T TIGR00630 729 RFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCK 766 (924)
T ss_pred hcCCCCCCCCCCCCccceEEEEEccCCCCcccCCCCcC
Confidence 344443 356999999985322111 112245677777
No 186
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=40.04 E-value=2.1e+02 Score=33.72 Aligned_cols=75 Identities=16% Similarity=0.323 Sum_probs=38.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhcchhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 004646 203 RKVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVI--AMVGMFKFLMVLVVAALVA 280 (740)
Q Consensus 203 ~~~~~~~p~~~~~~~~~~~~~~~~~~~w~~~~~rg~~~~~~~g~~~~~~~~w~~~~~~~--~m~~~~~~l~~~~~~~~~~ 280 (740)
...-+-||.....-.+..-.+++...+|.-..--+- .+...+..+-||+++.. -.--+..++...+++++++
T Consensus 330 ~~~~~d~~~A~~~alra~la~~~~~l~Wi~t~W~~G------~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a 403 (650)
T PF04632_consen 330 FPLHRDWPLALRNALRAFLAILIAGLFWIATGWPSG------ATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLA 403 (650)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHcCCChh------HHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHH
Confidence 334455677777777777777788888877644431 22333444555555542 1223333444444444444
Q ss_pred HHh
Q 004646 281 FFI 283 (740)
Q Consensus 281 ~~~ 283 (740)
.+.
T Consensus 404 ~~~ 406 (650)
T PF04632_consen 404 FLY 406 (650)
T ss_pred HHH
Confidence 433
No 187
>PRK09459 pspG phage shock protein G; Reviewed
Probab=40.00 E-value=1.6e+02 Score=26.47 Aligned_cols=30 Identities=17% Similarity=0.507 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhh
Q 004646 272 VLVVAALVAFFIGFALALVVVALSGTILLWLYGS 305 (740)
Q Consensus 272 ~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~ 305 (740)
+|.+++..+..+...|=+.++ ++..|+|-+
T Consensus 34 vM~l~Gm~~lviKLLPWLil~----~v~vW~~r~ 63 (76)
T PRK09459 34 VMFLGGMFALMIKLLPWLLLA----VVVVWVIRA 63 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 333344444444444433322 556666654
No 188
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=39.52 E-value=1.6e+02 Score=36.80 Aligned_cols=8 Identities=25% Similarity=0.821 Sum_probs=4.5
Q ss_pred eeehhhHH
Q 004646 342 TYVGWLGL 349 (740)
Q Consensus 342 ~~~gwlg~ 349 (740)
..++|+|.
T Consensus 362 lFigWFGp 369 (810)
T TIGR00844 362 MFIGHFGP 369 (810)
T ss_pred HHheeecc
Confidence 35567653
No 189
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=39.13 E-value=18 Score=40.52 Aligned_cols=49 Identities=22% Similarity=0.565 Sum_probs=33.3
Q ss_pred ccccccccceeeeeccCcc-----cccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEE
Q 004646 555 ACKKCNNFHVWIETKKSKA-----SARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIY 623 (740)
Q Consensus 555 iC~kC~GsG~~~~t~r~~s-----kar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~ 623 (740)
.|+.|.|+|....+..... .-..|..|+ |.|.... ....|+ .|.|.++.
T Consensus 145 ~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~-------G~G~~~~------------~kd~C~-~C~G~~~v 198 (337)
T KOG0712|consen 145 KCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCN-------GSGETIS------------LKDRCK-TCSGAKVV 198 (337)
T ss_pred CCCCCCCCCceeEEEeccccccccceeEeccCC-------Ccccccc------------ccccCc-ccccchhh
Confidence 6999999987665554332 336699998 8885421 234588 79987754
No 190
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=38.38 E-value=1.2e+02 Score=35.02 Aligned_cols=14 Identities=14% Similarity=0.499 Sum_probs=7.0
Q ss_pred cchhhHHHHHHHHH
Q 004646 244 MGTTSFFSVIWCSI 257 (740)
Q Consensus 244 ~g~~~~~~~~w~~~ 257 (740)
+|..++..||=+.+
T Consensus 37 ~~~~~~WavlTVvv 50 (406)
T PF11744_consen 37 FGQNAMWAVLTVVV 50 (406)
T ss_pred hhhcchHHHhhhHh
Confidence 46665555444433
No 191
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=38.29 E-value=1.2e+02 Score=30.27 Aligned_cols=43 Identities=16% Similarity=0.029 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHH--HHHHHHHhhh-hhhHHHHHHHHHHHHHHhhh
Q 004646 263 MVGMFKFLMVLVV--AALVAFFIGF-ALALVVVALSGTILLWLYGS 305 (740)
Q Consensus 263 m~~~~~~l~~~~~--~~~~~~~~g~-~~~~~iv~~~~~~ilw~~~~ 305 (740)
.+.++|+|..+++ .++++.+++. -+..++.+++|+++=|++..
T Consensus 77 aa~lvYllPLl~li~ga~l~~~~~~~e~~~~~~~~~g~~~g~~~~r 122 (154)
T PRK10862 77 SALLVYMTPLVGLFLGAALFQLLFGSDLAALCGALLGGVGGFLLAR 122 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 3444555444332 3445555543 22333344444444343333
No 192
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=38.22 E-value=1.8e+02 Score=36.07 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=21.3
Q ss_pred hhhhhHHHHHHHHhHHHH----HHHHHHHHHhcCch
Q 004646 158 KLSVNVVVRSLRVYVVPT----LKAAIELLERQSPM 189 (740)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 189 (740)
.++-++-++.||-++--+ ++.|..+.|++.|.
T Consensus 657 ~~ii~~~ikslrD~~~Lve~vgledA~qfiEdnPHp 692 (1189)
T KOG2041|consen 657 TCIIEVMIKSLRDVMNLVEAVGLEDAIQFIEDNPHP 692 (1189)
T ss_pred ceEEEEEehhhhhHHHHHHHhchHHHHHHHhcCCch
Confidence 455667778888665322 35677888888776
No 193
>COG3671 Predicted membrane protein [Function unknown]
Probab=38.19 E-value=1.1e+02 Score=29.80 Aligned_cols=46 Identities=15% Similarity=0.296 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhh
Q 004646 274 VVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLA 319 (740)
Q Consensus 274 ~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~f~~t~~~~i~g~~~ 319 (740)
++..+|+.+++|..----=.+..-=--|+.-.||.+.++.|+|.++
T Consensus 38 git~lvgvi~AYv~rd~~~~~~~SHy~f~iRTFw~~vl~~iIg~Ll 83 (125)
T COG3671 38 GITPLVGVIFAYVNRDKADSIAASHYEFLIRTFWLAVLWWIIGLLL 83 (125)
T ss_pred HHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554322111111224567888888888887777644
No 194
>COG0600 TauC ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]
Probab=37.91 E-value=3.8e+02 Score=28.96 Aligned_cols=91 Identities=16% Similarity=0.285 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcchhhhhhcchhhHHHHHHHHHH--H--HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 004646 215 HLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSIL--S--VIAMVGMFKFLMVLVVAALVAFFIGFALALV 290 (740)
Q Consensus 215 ~~~~~~~~~~~~~~~w~~~~~rg~~~~~~~g~~~~~~~~w~~~~--~--~~~m~~~~~~l~~~~~~~~~~~~~g~~~~~~ 290 (740)
++..+..+++++..-|+-|...-++.++==.+.+.+..+|-.+- . --..+-+..+++.++++++++..+|+..|..
T Consensus 12 ~~~~~~~~~~~l~~Wq~~~~~~~~~~~~LP~P~~V~~~~~~~~~~g~L~~~~~~Sl~rv~~Gf~la~~~gi~lgil~g~~ 91 (258)
T COG0600 12 ALLPLLGLLALLALWQLAARLGLIPPFILPSPSAVLAALVELLASGELFQHLLASLLRVLLGFALAAVLGIPLGILMGLS 91 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45556666666666666666666788888888888888877665 2 2345566778888888888888777765532
Q ss_pred ------------------HHHHHHHHHHHHhhh
Q 004646 291 ------------------VVALSGTILLWLYGS 305 (740)
Q Consensus 291 ------------------iv~~~~~~ilw~~~~ 305 (740)
.+++..++|+|+=-.
T Consensus 92 ~~~~~~l~P~i~~l~~iP~lA~~Pl~ilwfG~g 124 (258)
T COG0600 92 RLLERLLDPLVQVLRPIPPLALAPLAILWFGIG 124 (258)
T ss_pred HHHHHHHhHHHHHHhcCCHHHHHHHHHHHHhCC
Confidence 467778899997433
No 195
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=37.88 E-value=17 Score=40.70 Aligned_cols=32 Identities=31% Similarity=0.797 Sum_probs=24.9
Q ss_pred cccccccccccccceeeeeccCcccccccccccccccccCCCceEEeeeccccceee
Q 004646 550 ESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIF 606 (740)
Q Consensus 550 isR~ViC~kC~GsG~~~~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~ 606 (740)
....+.|..|+|.| |..|+ |.||+|.- +-||+
T Consensus 257 ~Evdv~~~~~~g~g--------------c~~ck-------~~~WiEil----G~Gmv 288 (339)
T PRK00488 257 AEVDVSCFKCGGKG--------------CRVCK-------GTGWLEIL----GCGMV 288 (339)
T ss_pred eEEEEEEeccCCCc--------------ccccC-------CCCceEEe----ccCcc
Confidence 45667899999865 88999 99999983 34665
No 196
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=37.78 E-value=1.5e+02 Score=27.40 Aligned_cols=7 Identities=57% Similarity=0.909 Sum_probs=2.7
Q ss_pred hhHHHHH
Q 004646 287 LALVVVA 293 (740)
Q Consensus 287 ~~~~iv~ 293 (740)
.+.+||+
T Consensus 73 ~a~liv~ 79 (121)
T PF07332_consen 73 LAFLIVA 79 (121)
T ss_pred HHHHHHH
Confidence 3333443
No 197
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=37.35 E-value=18 Score=43.75 Aligned_cols=50 Identities=22% Similarity=0.579 Sum_probs=32.8
Q ss_pred cccccccccceeeeeccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccccCCC
Q 004646 554 IACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWYICQG 633 (740)
Q Consensus 554 ViC~kC~GsG~~~~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa~CqG 633 (740)
+.|++|+-. -...++.|+.|+ .- +. ...|+ .|+-.--....-|..|..
T Consensus 2 ~~Cp~Cg~~--------n~~~akFC~~CG--------~~--------l~-------~~~Cp-~CG~~~~~~~~fC~~CG~ 49 (645)
T PRK14559 2 LICPQCQFE--------NPNNNRFCQKCG--------TS--------LT-------HKPCP-QCGTEVPVDEAHCPNCGA 49 (645)
T ss_pred CcCCCCCCc--------CCCCCccccccC--------CC--------CC-------CCcCC-CCCCCCCcccccccccCC
Confidence 579999863 245678899996 11 00 12588 788665555667888876
Q ss_pred Cc
Q 004646 634 MR 635 (740)
Q Consensus 634 ~G 635 (740)
.-
T Consensus 50 ~~ 51 (645)
T PRK14559 50 ET 51 (645)
T ss_pred cc
Confidence 53
No 198
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=37.12 E-value=1.6e+02 Score=32.62 Aligned_cols=38 Identities=26% Similarity=0.299 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhhhhhhhhccchhHHHH
Q 004646 293 ALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALF 330 (740)
Q Consensus 293 ~~~~~~ilw~~~~f~~t~~~~i~g~~~f~l~~~~~~~~ 330 (740)
.++..+++++...|..+-.+++++|.++.+-|....-.
T Consensus 158 l~~~~~~~~l~~~~ip~r~~ll~~g~~~l~~Hp~~~~~ 195 (359)
T PF06398_consen 158 LLLSPILLLLLSPFIPWRFVLLVSGAFVLLYHPPWRQA 195 (359)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCcHHHH
Confidence 33333334444455555566666666677777766433
No 199
>PRK10189 MATE family multidrug exporter; Provisional
Probab=36.76 E-value=2.9e+02 Score=31.76 Aligned_cols=18 Identities=17% Similarity=0.056 Sum_probs=10.4
Q ss_pred hhHHHHHHHHhHHHHHHH
Q 004646 161 VNVVVRSLRVYVVPTLKA 178 (740)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~ 178 (740)
...+..-+|..++++.=.
T Consensus 146 ~~~a~~Yl~i~~~~~~~~ 163 (478)
T PRK10189 146 KALALTYLELTVWSYPAA 163 (478)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666777666554443
No 200
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=36.56 E-value=17 Score=28.77 Aligned_cols=31 Identities=16% Similarity=0.424 Sum_probs=16.1
Q ss_pred cccccccccccceee-eeccCccccccccccc
Q 004646 552 RRIACKKCNNFHVWI-ETKKSKASARWCQECN 582 (740)
Q Consensus 552 R~ViC~kC~GsG~~~-~t~r~~skar~C~sCk 582 (740)
+..+|+.|.|+..+. .+.+.....-.|..|.
T Consensus 2 ~h~pCP~CGG~DrFri~~d~~~~G~~~C~~C~ 33 (40)
T PF08273_consen 2 KHGPCPICGGKDRFRIFDDKDGRGTWICRQCG 33 (40)
T ss_dssp EEE--TTTT-TTTEEEETT----S-EEETTTT
T ss_pred CCCCCCCCcCccccccCcCcccCCCEECCCCC
Confidence 456899998887554 5555555667788884
No 201
>PRK13591 ubiA prenyltransferase; Provisional
Probab=36.45 E-value=1.9e+02 Score=32.22 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHhhh
Q 004646 287 LALVVVALSGTILLWLYGS 305 (740)
Q Consensus 287 ~~~~iv~~~~~~ilw~~~~ 305 (740)
.++++++++++++.|+|..
T Consensus 119 ~g~~ll~ll~~l~g~lYS~ 137 (307)
T PRK13591 119 DGMLLLAFLPFITGYLYSK 137 (307)
T ss_pred HhHHHHHHHHHHHHHHhcC
Confidence 3344567888888888885
No 202
>PRK10160 taurine transporter subunit; Provisional
Probab=36.36 E-value=4.5e+02 Score=28.12 Aligned_cols=9 Identities=22% Similarity=0.722 Sum_probs=4.8
Q ss_pred hhhhhhhHH
Q 004646 203 RKVQQVYPV 211 (740)
Q Consensus 203 ~~~~~~~p~ 211 (740)
+++++-||.
T Consensus 12 ~~~~~~~~~ 20 (275)
T PRK10160 12 RRLKWRWPL 20 (275)
T ss_pred cchHhhccc
Confidence 345566653
No 203
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=36.33 E-value=95 Score=28.70 Aligned_cols=59 Identities=25% Similarity=0.329 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhhhccchhHHHHHHhhhheee
Q 004646 265 GMFKFLMVLVVAALVAFFIGFAL-----ALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYC 339 (740)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~~g~~~-----~~~iv~~~~~~ilw~~~~f~~t~~~~i~g~~~f~l~~~~~~~~~~~~y~~yc 339 (740)
+.+..=++|.+++.|-.|+-|.- +...-=. + -.--|++++++++|- ++..||. ||
T Consensus 13 ~vli~GIiLL~~ACIFAfidFSK~~s~~~~~~wRa--l-----Sii~FIlG~vl~lGi------------lifs~y~-~C 72 (91)
T PHA02680 13 GVLICGVLLLTAACVFAFVDFSKNTSNVTDYVWRA--L-----SVTCFIVGAVLLLGL------------FVFSMYR-KC 72 (91)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccCCCCcchhHHH--H-----HHHHHHHHHHHHHHH------------HHHHHhc-cc
Confidence 44455556666666666665532 2221100 0 111234566766664 5667999 99
Q ss_pred eeee
Q 004646 340 AWTY 343 (740)
Q Consensus 340 ~~~~ 343 (740)
....
T Consensus 73 ~~~~ 76 (91)
T PHA02680 73 SGSM 76 (91)
T ss_pred CCCc
Confidence 8744
No 204
>KOG4453 consensus Predicted ER membrane protein [Function unknown]
Probab=35.32 E-value=3.1e+02 Score=29.64 Aligned_cols=119 Identities=15% Similarity=0.187 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHHHhcCchhHHHHhhhhhhHhhhhhhhhHHHHHH--------------------
Q 004646 156 KVKLSVNVVVRSLRVYVVPTLKAAIELLERQSPMLMTNIYNAHDYVSRKVQQVYPVALNH-------------------- 215 (740)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-------------------- 215 (740)
|-|.-..++....=-+.++++.++.+.=+=|.++ ...--+-.+...++-.||+.++-
T Consensus 63 kheiprkv~hssigf~~l~l~g~g~kr~~i~~~L---i~kfi~ifigdlirlnWP~FsrLy~r~lg~lmre~erhl~nGv 139 (269)
T KOG4453|consen 63 KHEIPRKVAHSSIGFALLLLFGSGTKRNVIQQSL---IRKFIHIFIGDLIRLNWPIFSRLYIRGLGILMREVERHLLNGV 139 (269)
T ss_pred hhhhchhHhhhhHHHHHHHHHhcccchhhhhHHH---HHHHHHHHHhHHHHhccHHHHHHHHhcccccchHHHHHHhcch
Q ss_pred HHHHHHHHHHHHHHhhhhhhcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------
Q 004646 216 LGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFA--------- 286 (740)
Q Consensus 216 ~~~~~~~~~~~~~~w~~~~~rg~~~~~~~g~~~~~~~~w~~~~~~~~m~~~~~~l~~~~~~~~~~~~~g~~--------- 286 (740)
+...-.|..-+..+|++.+| .+.++.+|| - ++|..||-=+|-+
T Consensus 140 LfYvLgl~fs~~ff~kespi-----------~s~~Llswc------D-----------t~AdtvGRKfG~~tpk~aknKS 191 (269)
T KOG4453|consen 140 LFYVLGLLFSAVFFWKESPI-----------GSISLLSWC------D-----------TIADTVGRKFGSTTPKYAKNKS 191 (269)
T ss_pred HHHHHHHHHHhhccccccHH-----------HHHHHHHHh------h-----------hHHHHHhhhccccCCCcCCCcc
Q ss_pred ----hhHHHHHHHHHHHHHHhhh
Q 004646 287 ----LALVVVALSGTILLWLYGS 305 (740)
Q Consensus 287 ----~~~~iv~~~~~~ilw~~~~ 305 (740)
.|.|++|+|.-+..|-|+.
T Consensus 192 lAGSIgaft~Gvf~c~vy~gyf~ 214 (269)
T KOG4453|consen 192 LAGSIGAFTFGVFICIVYLGYFS 214 (269)
T ss_pred ccchHHHHHHHHHHHHHHHHHHh
No 205
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=35.21 E-value=5.4e+02 Score=28.38 Aligned_cols=13 Identities=38% Similarity=0.772 Sum_probs=7.1
Q ss_pred ehhhHHHHHhhhh
Q 004646 344 VGWLGLLLALNLS 356 (740)
Q Consensus 344 ~gwlg~~l~~nl~ 356 (740)
.|-+|++||.=++
T Consensus 306 ~G~~G~ilavPl~ 318 (344)
T PRK12287 306 LGPVGMLLSVPLT 318 (344)
T ss_pred HHHhHHHHHHHHH
Confidence 3445666665443
No 206
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=34.86 E-value=1.1e+02 Score=31.07 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=13.2
Q ss_pred CHHHHHHHHHHHHHHhCCCCCC
Q 004646 455 DVSILKREYRKKAMLVHPDKNM 476 (740)
Q Consensus 455 s~~eIKKAYRkLAlk~HPDKn~ 476 (740)
+..++-..|..+.. ||.++.
T Consensus 137 ~~~~l~~kY~~l~~--~~~~~~ 156 (199)
T PF10112_consen 137 TAVKLLEKYAELES--QPVKSE 156 (199)
T ss_pred HHHHHHHHHHHHHh--ccCCCh
Confidence 45677777777655 677763
No 207
>PRK11560 phosphoethanolamine transferase; Provisional
Probab=34.21 E-value=3.4e+02 Score=32.56 Aligned_cols=45 Identities=9% Similarity=0.166 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHHHHHHH-----HHH-HHHHHHHHHHHHHHhhhhhhHHH
Q 004646 247 TSFFSVIWCSILSVIAMVG-----MFK-FLMVLVVAALVAFFIGFALALVV 291 (740)
Q Consensus 247 ~~~~~~~w~~~~~~~~m~~-----~~~-~l~~~~~~~~~~~~~g~~~~~~i 291 (740)
.++.++++++++.+++..+ +.| ++++|++.++++.|+-.+.|++|
T Consensus 49 ~~~~~~~~~~~~~~~~l~~~~~~~~~K~~~~~l~l~sa~~~Yf~~~ygv~i 99 (558)
T PRK11560 49 VVELAATVLVTFFLLRLLSLFGRRFWRVLASLLVLFSAAASYYMTFFNVVI 99 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 5666777777766666665 233 56667777778888777777665
No 208
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=34.16 E-value=35 Score=41.89 Aligned_cols=53 Identities=15% Similarity=0.389 Sum_probs=33.5
Q ss_pred cccccccccccccceeeeeccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEcccccc
Q 004646 550 ESRRIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYNATDWY 629 (740)
Q Consensus 550 isR~ViC~kC~GsG~~~~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d~teCa 629 (740)
+...+.|..|+-. ..|+.|. .+.+..... -+..|.| |+-. ......|+
T Consensus 432 ys~~l~C~~Cg~v-------------~~Cp~Cd---------~~lt~H~~~--------~~L~CH~-Cg~~-~~~p~~Cp 479 (730)
T COG1198 432 YAPLLLCRDCGYI-------------AECPNCD---------SPLTLHKAT--------GQLRCHY-CGYQ-EPIPQSCP 479 (730)
T ss_pred ccceeecccCCCc-------------ccCCCCC---------cceEEecCC--------CeeEeCC-CCCC-CCCCCCCC
Confidence 4556899999853 4699996 333332111 1234884 8755 34567799
Q ss_pred cCCCC
Q 004646 630 ICQGM 634 (740)
Q Consensus 630 ~CqG~ 634 (740)
.|.+.
T Consensus 480 ~Cgs~ 484 (730)
T COG1198 480 ECGSE 484 (730)
T ss_pred CCCCC
Confidence 99987
No 209
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=34.10 E-value=88 Score=38.37 Aligned_cols=40 Identities=5% Similarity=0.096 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhCCCCC-CCcHHHHHHHHHHHHHHHHhhh
Q 004646 458 ILKREYRKKAMLVHPDKN-MGNEKAVEAFKKLQNAYEVLFD 497 (740)
Q Consensus 458 eIKKAYRkLAlk~HPDKn-~~~p~A~e~Fk~I~eAYeVLsD 497 (740)
++.++-+++|....-.+. +.++....++..+..+.+-+.+
T Consensus 273 ~~a~ac~~la~ai~~~~~~~~~~~~~~al~~l~~sl~~~~~ 313 (704)
T TIGR01666 273 LQAQACKEITASIRLNKPYQHDKRVERALLGTLHSLDLYRA 313 (704)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 455566666644432222 1224455667777777665543
No 210
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=34.09 E-value=1.2e+02 Score=32.16 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcchhhhhhcc
Q 004646 214 NHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMG 245 (740)
Q Consensus 214 ~~~~~~~~~~~~~~~~w~~~~~rg~~~~~~~g 245 (740)
.+...+..+++++.++ .-|..-=.-..+|.|
T Consensus 108 ~~~~~l~~~~~~~~v~-a~~lFPlWP~~~r~g 138 (224)
T PF03839_consen 108 PLMQYLIGALLLVGVI-AICLFPLWPRWMRQG 138 (224)
T ss_pred cHHHHHHHHHHHHHHH-HHHhhhcChHHHhhe
Confidence 4455555444444443 444444444445544
No 211
>COG4758 Predicted membrane protein [Function unknown]
Probab=33.48 E-value=2.9e+02 Score=29.74 Aligned_cols=6 Identities=33% Similarity=0.589 Sum_probs=2.1
Q ss_pred HHHHHH
Q 004646 274 VVAALV 279 (740)
Q Consensus 274 ~~~~~~ 279 (740)
.+++.+
T Consensus 35 ll~lll 40 (235)
T COG4758 35 LLALLL 40 (235)
T ss_pred HHHHHH
Confidence 333333
No 212
>PF07264 EI24: Etoposide-induced protein 2.4 (EI24); PDB: 3TX3_B.
Probab=33.37 E-value=2.2e+02 Score=28.70 Aligned_cols=21 Identities=5% Similarity=0.267 Sum_probs=9.8
Q ss_pred hhhHHHHHHHHH-HHHHHHHHH
Q 004646 246 TTSFFSVIWCSI-LSVIAMVGM 266 (740)
Q Consensus 246 ~~~~~~~~w~~~-~~~~~m~~~ 266 (740)
+-.+....+.++ ++++.+..+
T Consensus 15 ~~~l~~~~l~p~~l~~~l~~~~ 36 (219)
T PF07264_consen 15 SPKLRRLSLIPLLLNLLLFLAL 36 (219)
T ss_dssp STTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555444 444443333
No 213
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=32.95 E-value=1.9e+02 Score=30.97 Aligned_cols=12 Identities=25% Similarity=0.540 Sum_probs=6.0
Q ss_pred hhHHHHHhhhhh
Q 004646 307 WTTFFVIFLGGL 318 (740)
Q Consensus 307 ~~t~~~~i~g~~ 318 (740)
|.-..++++||+
T Consensus 72 ~~~~~l~~~Ggl 83 (284)
T PF12805_consen 72 LEHALLFLAGGL 83 (284)
T ss_pred HHHHHHHHHHHH
Confidence 444455555553
No 214
>KOG2946 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.94 E-value=81 Score=33.60 Aligned_cols=37 Identities=27% Similarity=0.510 Sum_probs=28.5
Q ss_pred HhhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhhh
Q 004646 282 FIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFK 321 (740)
Q Consensus 282 ~~g~~~~~~iv~~~~~~ilw~~~~f~~t~~~~i~g~~~f~ 321 (740)
.+||-.-.++|+. +|+|++..+.+.-++++.-|++.+
T Consensus 159 IlGYCLfPl~v~a---li~~~~~~l~~lr~vv~~~~~~WS 195 (234)
T KOG2946|consen 159 ILGYCLFPLVVAA---LIICLFRDLFFLRLVVTSIGLAWS 195 (234)
T ss_pred hhhhcccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677776666654 699999999988888777776666
No 215
>PHA03048 IMV membrane protein; Provisional
Probab=32.93 E-value=1.2e+02 Score=28.27 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=18.0
Q ss_pred hhHHHHHhhhhhhhhccchhHHHHHHhhhheeeeeee
Q 004646 307 WTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTY 343 (740)
Q Consensus 307 ~~t~~~~i~g~~~f~l~~~~~~~~~~~~y~~yc~~~~ 343 (740)
|++++++++|- ++..||..||....
T Consensus 51 FIlgivl~lG~------------~ifsmy~r~C~~~~ 75 (93)
T PHA03048 51 FVLGIVMTIGM------------LIYSMWGRYCTPSK 75 (93)
T ss_pred HHHHHHHHHHH------------HHHHHHhcccCCCc
Confidence 45577777775 55669999999743
No 216
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=32.46 E-value=1.7e+02 Score=34.37 Aligned_cols=84 Identities=17% Similarity=0.207 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhhhhhhcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 004646 218 HFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGT 297 (740)
Q Consensus 218 ~~~~~~~~~~~~w~~~~~rg~~~~~~~g~~~~~~~~w~~~~~~~~m~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~ 297 (740)
.|-.+.-|.+.+=+.-.-=|+.-.++.||-+.=.|+|-..+.+.- .++=.++++.|+-+.++..... ..+
T Consensus 21 ~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P---------~~~Ei~l~~vi~~~~~~~~f~~-~t~ 90 (497)
T COG5265 21 TFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILP---------TLVEISLVAVILWRVYGWWFAL-TTL 90 (497)
T ss_pred HHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhH---------HHHHHHHHHHHHHhhcccHHHH-HHH
Confidence 344455567777888888899999999999998888887766543 2222223333333344443332 246
Q ss_pred HHHHHhhhhhhHHH
Q 004646 298 ILLWLYGSFWTTFF 311 (740)
Q Consensus 298 ~ilw~~~~f~~t~~ 311 (740)
+.+|+|..||+...
T Consensus 91 vtv~lY~~ftv~~s 104 (497)
T COG5265 91 VTVILYLLFTVIVS 104 (497)
T ss_pred HHHHHHHHhheeeh
Confidence 88999999997543
No 217
>PHA03242 envelope glycoprotein M; Provisional
Probab=32.42 E-value=1.2e+02 Score=35.15 Aligned_cols=67 Identities=12% Similarity=0.163 Sum_probs=57.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHH
Q 004646 246 TTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFV 312 (740)
Q Consensus 246 ~~~~~~~~w~~~~~~~~m~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~f~~t~~~ 312 (740)
.+||++-.|-..+..+.+..++-++..+++=.++.+|+-.-+|..+=.++|..|||+-.-=+..-+.
T Consensus 245 gNsF~v~~~~~v~~ai~~F~vL~ii~liv~E~vL~~Yv~vl~G~~lG~lia~~~l~~p~~rY~~~~~ 311 (428)
T PHA03242 245 ANNFHLSLPGTLVCLTAVFALLVVLLLVVVEGVLSHYVRVLPGPHLGALVAAGIVGVAAHRYFTQGY 311 (428)
T ss_pred hcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 4789999999999999999999999999999999999999999999889999999986655544443
No 218
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=32.37 E-value=95 Score=27.51 Aligned_cols=16 Identities=13% Similarity=0.281 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHHHHH
Q 004646 287 LALVVVALSGTILLWL 302 (740)
Q Consensus 287 ~~~~iv~~~~~~ilw~ 302 (740)
.+...++++|.+++|.
T Consensus 62 ~~~~~~~v~G~~v~~~ 77 (82)
T PF11239_consen 62 LSQPPLGVAGFVVMVA 77 (82)
T ss_pred HhhhHHHHHHHHHHHH
Confidence 3333355555555543
No 219
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=32.08 E-value=5.5e+02 Score=27.77 Aligned_cols=50 Identities=12% Similarity=0.247 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhhhhhcch-hhhhhcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 004646 221 KIMLLLSMLWLDCTIRGI-DSFMRMGTTSFFSVIWCSILSVIAMVGMFKFL 270 (740)
Q Consensus 221 ~~~~~~~~~w~~~~~rg~-~~~~~~g~~~~~~~~w~~~~~~~~m~~~~~~l 270 (740)
+++.=.++.|.-..+.+. -+..|+=.+|++--+|+|++-+-.+..+..++
T Consensus 12 N~~md~~lL~~t~~~~~~~~~~~Rll~~A~~Gal~~~~~~~p~~~~~~~~~ 62 (293)
T PF03419_consen 12 NFLMDYFLLWLTARLLKRRASRWRLLLGAAIGALYSLLIFFPPLSFLYSIL 62 (293)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 333334444444333333 35677777888888888777665444444333
No 220
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=31.78 E-value=4e+02 Score=28.77 Aligned_cols=25 Identities=16% Similarity=0.305 Sum_probs=18.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004646 205 VQQVYPVALNHLGHFAKIMLLLSMLW 230 (740)
Q Consensus 205 ~~~~~p~~~~~~~~~~~~~~~~~~~w 230 (740)
+++ +|.-......+|.+|++..++|
T Consensus 5 L~~-~~~er~k~~~~G~~vl~ta~la 29 (301)
T PF14362_consen 5 LKR-SPAERNKYAGIGAAVLFTALLA 29 (301)
T ss_pred Hhc-ChHHHHHHHHHHHHHHHHHHHH
Confidence 345 7777777888888887777666
No 221
>TIGR03663 conserved hypothetical protein TIGR03663. Members of this protein family, uncommon and rather sporadically distributed, are found almost always in the same genomes as members of family TIGR03662, and frequently as a nearby gene. Members show some N-terminal sequence similarity with Pfam family pfam02366, dolichyl-phosphate-mannose-protein mannosyltransferase. The few invariant residues in this family, found toward the N-terminus, include a dipeptide DE, a tripeptide HGP, and two different Arg residues. Up to three members may be found in a genome. The function is unknown.
Probab=31.65 E-value=7.1e+02 Score=28.81 Aligned_cols=14 Identities=21% Similarity=-0.002 Sum_probs=5.4
Q ss_pred HHHHHHHHHHhhhh
Q 004646 273 LVVAALVAFFIGFA 286 (740)
Q Consensus 273 ~~~~~~~~~~~g~~ 286 (740)
.+++...++.-..+
T Consensus 152 ag~~~gLa~ltKg~ 165 (439)
T TIGR03663 152 AASALALAFTSKEN 165 (439)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344443333
No 222
>PF13886 DUF4203: Domain of unknown function (DUF4203)
Probab=31.61 E-value=4.7e+02 Score=26.79 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=16.8
Q ss_pred hhhHHHHHhhhhhhhhccchhHHHHHHh
Q 004646 306 FWTTFFVIFLGGLAFKFTHERLALFITT 333 (740)
Q Consensus 306 f~~t~~~~i~g~~~f~l~~~~~~~~~~~ 333 (740)
+|++...+.+....+.+..+|.++.+.|
T Consensus 114 ~~~~~~~~~l~~~~l~l~~~k~~~I~~t 141 (210)
T PF13886_consen 114 FWVLFLCLALVFGLLTLKFQKPFLIVST 141 (210)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4444444444455677788887666665
No 223
>PF10947 DUF2628: Protein of unknown function (DUF2628) ; InterPro: IPR024399 Some members in this family of proteins have been annotated as YigF. Their function is currently unknown.
Probab=31.51 E-value=3.1e+02 Score=25.15 Aligned_cols=15 Identities=20% Similarity=0.463 Sum_probs=8.2
Q ss_pred hhHHHHHHHHHHHHH
Q 004646 247 TSFFSVIWCSILSVI 261 (740)
Q Consensus 247 ~~~~~~~w~~~~~~~ 261 (740)
|.||..+|+..--+-
T Consensus 42 Af~f~~~w~l~r~mw 56 (108)
T PF10947_consen 42 AFFFGPLWLLYRKMW 56 (108)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445556666555443
No 224
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=31.33 E-value=33 Score=43.27 Aligned_cols=17 Identities=29% Similarity=0.781 Sum_probs=12.8
Q ss_pred ccccccccccccccCCCceEEeee
Q 004646 575 ARWCQECNDYHQAKDGDGWVEQSS 598 (740)
Q Consensus 575 ar~C~sCk~~H~akdG~G~Ve~~~ 598 (740)
.-.|+.|+ |.|.+....
T Consensus 738 ~G~C~~C~-------G~G~~~~~~ 754 (943)
T PRK00349 738 GGRCEACQ-------GDGVIKIEM 754 (943)
T ss_pred CCCCCccc-------ccceEEEEe
Confidence 34699998 999888753
No 225
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.29 E-value=1.1e+03 Score=31.66 Aligned_cols=133 Identities=18% Similarity=0.295 Sum_probs=78.8
Q ss_pred HHHHHHHHhhhhhhcchhh---hhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhhhh
Q 004646 222 IMLLLSMLWLDCTIRGIDS---FMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVL-----------VVAALVAFFIGFAL 287 (740)
Q Consensus 222 ~~~~~~~~w~~~~~rg~~~---~~~~g~~~~~~~~w~~~~~~~~m~~~~~~l~~~-----------~~~~~~~~~~g~~~ 287 (740)
++-.+++-|+=..++ +.+ +-..|.+.||+++-+.|.++-=|.-++-=+.++ -+.++....+.+-.
T Consensus 468 ~i~ali~gslF~~~~-~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~ 546 (1391)
T KOG0065|consen 468 VIQALITGSLFYRTP-MSTTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPS 546 (1391)
T ss_pred HHHHHHHhhheeecc-CcccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcH
Confidence 334444555555555 211 223466778888888888887765555444443 24555666677777
Q ss_pred hHHHHHHHHHHHHHHh------hhhhhHHHHHhhhhhh----hhc------------cchhHHHHHHhhhheeeee--ee
Q 004646 288 ALVVVALSGTILLWLY------GSFWTTFFVIFLGGLA----FKF------------THERLALFITTMYSIYCAW--TY 343 (740)
Q Consensus 288 ~~~iv~~~~~~ilw~~------~~f~~t~~~~i~g~~~----f~l------------~~~~~~~~~~~~y~~yc~~--~~ 343 (740)
-++.+.+|-|+.-||. +.||+-.+++++...+ |.+ .-.-+++|++.||+.|=.- .-
T Consensus 547 ~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m 626 (1391)
T KOG0065|consen 547 SFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDM 626 (1391)
T ss_pred HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeecccc
Confidence 7777777777777776 5677766666554432 111 2235777888888866443 23
Q ss_pred ehhhHHHHHhhh
Q 004646 344 VGWLGLLLALNL 355 (740)
Q Consensus 344 ~gwlg~~l~~nl 355 (740)
-.|+.-+.-+|+
T Consensus 627 ~~W~~Wi~yinP 638 (1391)
T KOG0065|consen 627 PPWFRWIAYINP 638 (1391)
T ss_pred chHHHHHHHHCH
Confidence 446655555554
No 226
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=31.21 E-value=1.3e+02 Score=33.58 Aligned_cols=15 Identities=13% Similarity=0.558 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHH
Q 004646 248 SFFSVIWCSILSVIA 262 (740)
Q Consensus 248 ~~~~~~w~~~~~~~~ 262 (740)
+++.-+|..++.+..
T Consensus 101 ~~~~g~~~~~~~~~~ 115 (366)
T PRK10245 101 AVLAGMWVGVMGVNV 115 (366)
T ss_pred HHHHhHHHHHHcccc
Confidence 444455665554433
No 227
>PF07158 MatC_N: Dicarboxylate carrier protein MatC N-terminus; InterPro: IPR009827 This entry represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC. The MatC protein is an integral membrane protein that could function as a malonate carrier [].
Probab=31.09 E-value=90 Score=31.25 Aligned_cols=59 Identities=24% Similarity=0.359 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhh-------hhhhHHHHHhhhhhhhhccchhH
Q 004646 269 FLMVLVVAALVAFFIGFALALVVVALSGTILLWLYG-------SFWTTFFVIFLGGLAFKFTHERL 327 (740)
Q Consensus 269 ~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~-------~f~~t~~~~i~g~~~f~l~~~~~ 327 (740)
.|++|+++-+++.+-..+.|++-++..-++-..+.+ ..|-+.+++++.|..|.++++..
T Consensus 7 sl~~Lv~~i~ig~~~kiNiGllAi~~A~vig~~~~g~~~~~ii~gfP~~lf~~l~GVt~lf~iA~~ 72 (149)
T PF07158_consen 7 SLLALVAVIVIGFVRKINIGLLAIAFAFVIGTFLAGMSDKEIIAGFPTSLFITLVGVTLLFGIAQV 72 (149)
T ss_pred HHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHcCCCHHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 355666666677777777766655542233333333 46999999999998888877654
No 228
>COG4420 Predicted membrane protein [Function unknown]
Probab=30.97 E-value=51 Score=34.24 Aligned_cols=59 Identities=15% Similarity=0.256 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhhhccchhHHHHHHhhhheeeeeeeehhhHHHHHhhhhhhhHHHHHHHHh
Q 004646 289 LVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLK 368 (740)
Q Consensus 289 ~~iv~~~~~~ilw~~~~f~~t~~~~i~g~~~f~l~~~~~~~~~~~~y~~yc~~~~~gwlg~~l~~nl~flS~diL~~llq 368 (740)
-||+..+.+|++|+..+.|....+ .+--+ -|+||-+++|+--++.+ .+|-+-|
T Consensus 59 ~fil~~~~~ll~Wi~lNl~~~~~~----------~wDpy---------------PFi~LnLllS~~AaiqA--p~IlmSQ 111 (191)
T COG4420 59 AFILTFTLLLLLWIVLNLFLVPGL----------AWDPY---------------PFILLNLLLSTLAAIQA--PLILMSQ 111 (191)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCC----------cCCCc---------------cHHHHHHHHHHHHHHHH--hHHHHHH
Confidence 466667778999999888764431 11112 57789999998888887 7888888
Q ss_pred hhccCC
Q 004646 369 SKVNQH 374 (740)
Q Consensus 369 ~~~~e~ 374 (740)
|...++
T Consensus 112 NRQa~r 117 (191)
T COG4420 112 NRQAER 117 (191)
T ss_pred hHHHHH
Confidence 777776
No 229
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=30.93 E-value=3.8e+02 Score=34.40 Aligned_cols=11 Identities=18% Similarity=0.181 Sum_probs=4.9
Q ss_pred HHHhhhhhhHH
Q 004646 300 LWLYGSFWTTF 310 (740)
Q Consensus 300 lw~~~~f~~t~ 310 (740)
+++....|++.
T Consensus 971 ~~~~~~~wt~~ 981 (1057)
T TIGR01652 971 IALEINRWNWI 981 (1057)
T ss_pred HHHHHhHhHHH
Confidence 34444455443
No 230
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=30.88 E-value=31 Score=34.16 Aligned_cols=44 Identities=25% Similarity=0.480 Sum_probs=23.4
Q ss_pred ccccccccceeeeeccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceE
Q 004646 555 ACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRI 622 (740)
Q Consensus 555 iC~kC~GsG~~~~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv 622 (740)
.|..|.|.+ -..|..|+ |+=.+.... .+..+. -..|+ .|++.|.
T Consensus 101 ~C~~Cgg~r-----------fv~C~~C~-------Gs~k~~~~~-~~~~~~----~~rC~-~Cnengl 144 (147)
T cd03031 101 VCEGCGGAR-----------FVPCSECN-------GSCKVFAEN-ATAAGG----FLRCP-ECNENGL 144 (147)
T ss_pred CCCCCCCcC-----------eEECCCCC-------CcceEEecc-Cccccc----EEECC-CCCcccc
Confidence 477777754 34577777 555444321 000111 13488 7887765
No 231
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=30.73 E-value=33 Score=44.23 Aligned_cols=57 Identities=18% Similarity=0.345 Sum_probs=33.6
Q ss_pred ccccccccccceeeeeccCcccccccccccccccccCCCceEEeeeccccceeeEEEeeccccccCCceEEc---ccccc
Q 004646 553 RIACKKCNNFHVWIETKKSKASARWCQECNDYHQAKDGDGWVEQSSEPLFFGIFQKVDVPCAYVCANSRIYN---ATDWY 629 (740)
Q Consensus 553 ~ViC~kC~GsG~~~~t~r~~skar~C~sCk~~H~akdG~G~Ve~~~q~~~pGm~Qqiq~pC~y~C~GsGv~d---~teCa 629 (740)
...|++|+... ....|+.|+ .. . . + ...|+ .|+..-..+ ...|+
T Consensus 667 ~rkCPkCG~~t----------~~~fCP~CG-------s~----t--e---~------vy~CP-sCGaev~~des~a~~CP 713 (1337)
T PRK14714 667 RRRCPSCGTET----------YENRCPDCG-------TH----T--E---P------VYVCP-DCGAEVPPDESGRVECP 713 (1337)
T ss_pred EEECCCCCCcc----------ccccCcccC-------Cc----C--C---C------ceeCc-cCCCccCCCccccccCC
Confidence 46899998742 123899997 11 0 0 0 11488 798632222 45799
Q ss_pred cCCCCccccceeE
Q 004646 630 ICQGMRCPANTHK 642 (740)
Q Consensus 630 ~CqG~G~v~~t~~ 642 (740)
.|...-......+
T Consensus 714 ~CGtplv~~~~~~ 726 (1337)
T PRK14714 714 RCDVELTPYQRRT 726 (1337)
T ss_pred CCCCcccccceEE
Confidence 9998765444433
No 232
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=30.42 E-value=1.5e+02 Score=31.04 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 004646 291 VVALSGTILLWLYGSFWT 308 (740)
Q Consensus 291 iv~~~~~~ilw~~~~f~~ 308 (740)
+.++.+.+.|||...+.+
T Consensus 165 ~lv~~~sm~lWi~v~i~t 182 (226)
T COG4858 165 LLVAVLSMLLWIAVMIAT 182 (226)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445567889999887544
No 233
>PRK13857 type IV secretion system pilin subunit VirB2; Provisional
Probab=30.31 E-value=99 Score=29.95 Aligned_cols=38 Identities=18% Similarity=0.434 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhhhcc
Q 004646 286 ALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFT 323 (740)
Q Consensus 286 ~~~~~iv~~~~~~ilw~~~~f~~t~~~~i~g~~~f~l~ 323 (740)
..++.++++.++-+.||+|..=..-...++.|+...+-
T Consensus 71 g~~iA~LAVI~vG~swmfGrldl~~a~~Vv~GI~iVFG 108 (120)
T PRK13857 71 GQSLAVLGIVAIGISWMFGRASLGLVAGVVGGIVIMFG 108 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhheec
Confidence 45667788888999999997533344444555444443
No 234
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=30.22 E-value=57 Score=30.83 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004646 246 TTSFFSVIWCSILSVIAMVGMFKFLMVLV 274 (740)
Q Consensus 246 ~~~~~~~~w~~~~~~~~m~~~~~~l~~~~ 274 (740)
+..|+++.|..++-++..++.+.+|..+|
T Consensus 65 S~~F~L~~~~ti~lv~~~~~~I~lL~svG 93 (103)
T PF12955_consen 65 SVPFWLFAGFTIALVVLVAGAIGLLFSVG 93 (103)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45688888988888888777777777654
No 235
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=30.12 E-value=2.7e+02 Score=24.32 Aligned_cols=39 Identities=23% Similarity=0.642 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 004646 249 FFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVAL 294 (740)
Q Consensus 249 ~~~~~w~~~~~~~~m~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~ 294 (740)
||-.+|-.| = ++-+++.++.-.+..+.++++.|++.+++
T Consensus 6 ~fk~iW~~~-D------Ii~Fila~i~i~it~F~~n~~~g~i~i~I 44 (63)
T PF06341_consen 6 FFKTIWKYF-D------IILFILAMIFINITAFLINQIAGLISIGI 44 (63)
T ss_pred HHHHHHHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777622 1 22345556666667788888888888877
No 236
>KOG4623 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.95 E-value=4.3e+02 Score=31.56 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=12.1
Q ss_pred CCCCCCCCCCCCCchhh
Q 004646 59 PSADSSSDDHHAGDESI 75 (740)
Q Consensus 59 ~~~~~~~~~~~~~~~~~ 75 (740)
|+||--++--..||-+.
T Consensus 51 psCEQyNgftedGDynr 67 (611)
T KOG4623|consen 51 PSCEQYNGFTEDGDYNR 67 (611)
T ss_pred CcHHhhCCCCcCCcccc
Confidence 88887777666676554
No 237
>PF01027 Bax1-I: Inhibitor of apoptosis-promoting Bax1; InterPro: IPR006214 Programmed cell-death involves a set of Bcl-2 family proteins, some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some of which promote it (Bax and Bak) []. Human Bax inhibitor, BI-1, is an evolutionarily conserved integral membrane protein containing multiple membrane-spanning segments predominantly localised to intracellular membranes. It has 6-7 membrane-spanning domains. The C termini of the mammalian BI-1 proteins are comprised of basic amino acids resembling some nuclear targeting sequences, but otherwise the predicted proteins lack motifs that suggest a function. As plant BI-1 appears to localise predominantly to the ER, we hypothesized that plant BI-1 could also regulate cell death triggered by ER stress []. BI-1 appears to exert its effect through an interaction with calmodulin [].
Probab=29.92 E-value=5.7e+02 Score=25.44 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHhhhh
Q 004646 287 LALVVVALSGTILLWLYGSF 306 (740)
Q Consensus 287 ~~~~iv~~~~~~ilw~~~~f 306 (740)
.+.++++++++++..+...|
T Consensus 124 ~~~l~~~l~~l~i~~l~~~f 143 (205)
T PF01027_consen 124 GGILFIGLIGLIIFGLVSIF 143 (205)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 34455666655555554443
No 238
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=29.88 E-value=3.4e+02 Score=29.67 Aligned_cols=49 Identities=18% Similarity=0.321 Sum_probs=32.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhcchhhHHHHHHH
Q 004646 205 VQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWC 255 (740)
Q Consensus 205 ~~~~~p~~~~~~~~~~~~~~~~~~~w~~~~~rg~~~~~~~g~~~~~~~~w~ 255 (740)
-.+.|-++...+.|+|-+=++.=++|+=.. |-.---++|+.-|+++.-.
T Consensus 132 ~~q~WRl~T~~flH~~~~Hl~fNml~l~~l--G~~iE~~~G~~~~l~l~l~ 180 (276)
T PRK10907 132 KFELWRYFTHALLHFSLLHILFNLLWWWYL--GGAVEKRLGSGKLIVITLI 180 (276)
T ss_pred cCCcHHHHhHHHHhCCHHHHHHHHHHHHHH--HHHHHHHHChHHHHHHHHH
Confidence 347799999999999877666656655433 2222347788777665443
No 239
>PRK10794 cell wall shape-determining protein; Provisional
Probab=29.82 E-value=6.2e+02 Score=28.57 Aligned_cols=31 Identities=16% Similarity=0.300 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhhhhhhcchhhhhhcchhh
Q 004646 218 HFAKIMLLLSMLWLDCTIRGIDSFMRMGTTS 248 (740)
Q Consensus 218 ~~~~~~~~~~~~w~~~~~rg~~~~~~~g~~~ 248 (740)
.+..+++|++.....-.+.|-.+-+++|.-+
T Consensus 79 ~~~~~~lL~l~~~~g~~~~Ga~rWi~iG~~~ 109 (370)
T PRK10794 79 YIICIILLVAVDAFGQISKGAQRWLDLGIVR 109 (370)
T ss_pred HHHHHHHHHHHHhcCCCcCCcccceecCCcc
Confidence 3455666777766777788888899998754
No 240
>PRK13735 conjugal transfer mating pair stabilization protein TraG; Provisional
Probab=29.78 E-value=1.7e+02 Score=37.16 Aligned_cols=69 Identities=9% Similarity=0.173 Sum_probs=31.7
Q ss_pred HHHHHHhhhhhhHHHHHhhhhhhhhccchhHHHHHHhhhheeeeeeeehhhHHHHHhhhhhhhHHHHHH
Q 004646 297 TILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIF 365 (740)
Q Consensus 297 ~~ilw~~~~f~~t~~~~i~g~~~f~l~~~~~~~~~~~~y~~yc~~~~~gwlg~~l~~nl~flS~diL~~ 365 (740)
-+.+++|..+|+..|.||=....|.++-....+.+..+=.|.-.-.++++++-.|++-..||+=-|+--
T Consensus 360 Y~~~~iwLqlWppLfAIIN~~m~~~~~~~G~~~tLs~~~~i~~~~sdia~~aGyL~msIP~LA~~ivkG 428 (942)
T PRK13735 360 YVFALMWLQSWPLLYAILNSAMTFYAKQNGAPVVLSELSQIQLKYSDLASTAGYLSMMIPPLSWGMVKG 428 (942)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566677655554433233222222111111111111122345667777777777777655544
No 241
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=29.73 E-value=5.9e+02 Score=27.92 Aligned_cols=14 Identities=0% Similarity=-0.054 Sum_probs=8.2
Q ss_pred HHHHHHHHHhhhhh
Q 004646 274 VVAALVAFFIGFAL 287 (740)
Q Consensus 274 ~~~~~~~~~~g~~~ 287 (740)
.||++-|+-+++.|
T Consensus 277 lIagiyGMNf~~mP 290 (322)
T COG0598 277 LITGFYGMNFKGMP 290 (322)
T ss_pred HHHcccccCCCCCc
Confidence 55666666666544
No 242
>PF12351 Fig1: Ca2+ regulator and membrane fusion protein Fig1
Probab=29.54 E-value=6.3e+02 Score=25.83 Aligned_cols=61 Identities=15% Similarity=0.119 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhh
Q 004646 248 SFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWT 308 (740)
Q Consensus 248 ~~~~~~w~~~~~~~~m~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~f~~ 308 (740)
+-....++.+.+++..++.+.--.+..++..++.-++++.-..=+|.-+.++-|+-+.|-.
T Consensus 110 ~~~~l~l~~~~~~l~~~~a~~qH~a~~A~~~~~~~~s~g~v~~~~G~~a~~l~W~aF~f~~ 170 (182)
T PF12351_consen 110 SKVALGLSFLSVLLWLVGAMWQHVASVASSTMIEDASMGIVKVKVGKAAMVLGWFAFAFLL 170 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEeccchhHHhHHHHHHHHHH
Confidence 3445555566666666666666677777777777777776555578888899997766633
No 243
>smart00730 PSN Presenilin, signal peptide peptidase, family. Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues, present in eukaryotes and archaea, also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity.
Probab=29.33 E-value=7.4e+02 Score=26.59 Aligned_cols=10 Identities=40% Similarity=0.733 Sum_probs=6.3
Q ss_pred CcccccCccc
Q 004646 441 DHYSALGLSR 450 (740)
Q Consensus 441 d~YeILGV~~ 450 (740)
+-+..||+-.
T Consensus 169 ~~~~~LGLGD 178 (249)
T smart00730 169 GRFSMLGLGD 178 (249)
T ss_pred CccceecCCC
Confidence 3466788754
No 244
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=29.22 E-value=4.2e+02 Score=26.46 Aligned_cols=9 Identities=22% Similarity=0.571 Sum_probs=4.0
Q ss_pred Hhhhhhhcc
Q 004646 229 LWLDCTIRG 237 (740)
Q Consensus 229 ~w~~~~~rg 237 (740)
-|.|+.+=+
T Consensus 124 ~~~~~~~a~ 132 (193)
T PF06738_consen 124 SWIDMIVAF 132 (193)
T ss_pred CHHHHHHHH
Confidence 355544433
No 245
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=29.22 E-value=6.2e+02 Score=33.98 Aligned_cols=29 Identities=17% Similarity=0.119 Sum_probs=14.3
Q ss_pred eeeeeeeehhhHHHHHhhhhhhhHHHHHHHH
Q 004646 337 IYCAWTYVGWLGLLLALNLSFVSSDALIFFL 367 (740)
Q Consensus 337 ~yc~~~~~gwlg~~l~~nl~flS~diL~~ll 367 (740)
+.=..--..|-+|+--+.+.+.| |+-||+
T Consensus 2415 VTRNgrSIvlTa~LALILvYlFS--IiGflf 2443 (2706)
T KOG3533|consen 2415 VTRNGRSIVLTALLALILVYLFS--ILGFLF 2443 (2706)
T ss_pred HhcCCceeHHHHHHHHHHHHHHH--HHHHHh
Confidence 44344334555555444556666 444443
No 246
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=29.16 E-value=1.4e+02 Score=32.83 Aligned_cols=18 Identities=11% Similarity=0.015 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 004646 287 LALVVVALSGTILLWLYG 304 (740)
Q Consensus 287 ~~~~iv~~~~~~ilw~~~ 304 (740)
+.++.++++++++.|+|.
T Consensus 120 ~~~~~~~~~~~~lg~~Ys 137 (308)
T PRK12887 120 PWLLITVGISLLIGTAYS 137 (308)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 456777888899999997
No 247
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=29.11 E-value=62 Score=32.03 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=18.1
Q ss_pred ccccccCCce-EEccc--------ccccCCCCccc
Q 004646 612 PCAYVCANSR-IYNAT--------DWYICQGMRCP 637 (740)
Q Consensus 612 pC~y~C~GsG-v~d~t--------eCa~CqG~G~v 637 (740)
||. .|.|+. ++... .|+.|+-.|.+
T Consensus 112 ~C~-~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~ 145 (147)
T cd03031 112 PCS-ECNGSCKVFAENATAAGGFLRCPECNENGLV 145 (147)
T ss_pred ECC-CCCCcceEEeccCcccccEEECCCCCccccc
Confidence 598 899975 44443 69999887754
No 248
>COG1863 MnhE Multisubunit Na+/H+ antiporter, MnhE subunit [Inorganic ion transport and metabolism]
Probab=29.03 E-value=84 Score=31.67 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=13.3
Q ss_pred hhhhHHHHHH-HHHHHHHHhhhhhh
Q 004646 285 FALALVVVAL-SGTILLWLYGSFWT 308 (740)
Q Consensus 285 ~~~~~~iv~~-~~~~ilw~~~~f~~ 308 (740)
|+.+-+++|+ +|++++|+...|.+
T Consensus 22 ~s~~~~i~G~ivg~iv~~~~~~~~~ 46 (158)
T COG1863 22 FSPANLILGFIVGAIVLLLLRRFLP 46 (158)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcccc
Confidence 4455555543 45666666666655
No 249
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=29.02 E-value=2.3e+02 Score=30.79 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 004646 287 LALVVVALSGTILLWLYG 304 (740)
Q Consensus 287 ~~~~iv~~~~~~ilw~~~ 304 (740)
..+++++++++++-|.|.
T Consensus 116 ~~~l~l~~~~~~~~~~Yt 133 (296)
T PRK05951 116 IGAVTLALLGVFLWTCYM 133 (296)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 346777788888888884
No 250
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=28.92 E-value=5.8e+02 Score=26.00 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=34.3
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhhhHHHHHHHHHHHHHHhhhhh
Q 004646 241 FMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVA----FFIGFALALVVVALSGTILLWLYGSFW 307 (740)
Q Consensus 241 ~~~~g~~~~~~~~w~~~~~~~~m~~~~~~l~~~~~~~~~~----~~~g~~~~~~iv~~~~~~ilw~~~~f~ 307 (740)
.=|.|+..++.+++..++.++.+. ..+++..+++++++ -.-+|.---.++.=++++-+|+.+++.
T Consensus 55 V~K~G~~~i~~~i~gl~~~~~G~~--~~~~~~~iv~gliAElI~~~g~y~~~~~~~iay~vf~~~~~g~~~ 123 (186)
T PF09605_consen 55 VPKRGAFLIMGIIMGLIFFLMGHG--WPMLIVCIVGGLIAELILKKGGYKSKKRNTIAYAVFSLGYMGPYL 123 (186)
T ss_pred cCchHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhHH
Confidence 346778888888888887777654 22333333333322 222344333344444666666665443
No 251
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=28.92 E-value=2.8e+02 Score=32.07 Aligned_cols=38 Identities=24% Similarity=0.534 Sum_probs=24.1
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHhhh--------hhhHHHHHhhhhh
Q 004646 281 FFIGFALALVVVALSGTILLWLYGS--------FWTTFFVIFLGGL 318 (740)
Q Consensus 281 ~~~g~~~~~~iv~~~~~~ilw~~~~--------f~~t~~~~i~g~~ 318 (740)
..++.|...|+.++.+++++..+.. |++|..+++....
T Consensus 183 ~Li~~T~~~y~~si~~~v~~y~~f~~~~C~lN~~fIt~nliL~vi~ 228 (429)
T PF03348_consen 183 ALIGVTLLFYAASIAGIVLMYVFFTPSGCSLNKFFITFNLILCVII 228 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHH
Confidence 3456677788888877777776654 5555555444443
No 252
>COG3846 TrbL Type IV secretory pathway, TrbL components [Intracellular trafficking and secretion]
Probab=28.84 E-value=2.1e+02 Score=33.42 Aligned_cols=67 Identities=21% Similarity=0.184 Sum_probs=31.8
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHH
Q 004646 240 SFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFV 312 (740)
Q Consensus 240 ~~~~~g~~~~~~~~w~~~~~~~~m~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~f~~t~~~ 312 (740)
...|++...+|...- ++.-.-|+-.+.++..-.....+.+++.-.++.+.+ -|++|++..|..-.++
T Consensus 149 ~s~~~~~~~~~~~~~--~~A~~~vil~~~l~~~q~f~i~v~~~L~tL~~~ill----~~~l~~~t~fLA~~~l 215 (452)
T COG3846 149 ISNLSFYNIFFINAI--ILAHVVVILWFFLLAVQFFFLLVEFWLTTLAGFILL----GFGLSLETLFLAERFL 215 (452)
T ss_pred hhccCcchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 455666666666422 222223333333333333344444555444544444 3466666666554444
No 253
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=28.79 E-value=1e+02 Score=33.29 Aligned_cols=81 Identities=16% Similarity=0.173 Sum_probs=49.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004646 205 VQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIG 284 (740)
Q Consensus 205 ~~~~~p~~~~~~~~~~~~~~~~~~~w~~~~~rg~~~~~~~g~~~~~~~~w~~~~~~~~m~~~~~~l~~~~~~~~~~~~~g 284 (740)
++---|++..|++-.|-++.-+++. .++++--| --.+|.+..-....=.++..++..+|
T Consensus 22 ~~~gDg~~fQw~~~~~i~~~g~~v~----~~~~~p~f-----------------~p~amlgG~lW~~gN~~~vpii~~iG 80 (254)
T PF07857_consen 22 FDTGDGFFFQWVMCSGIFLVGLVVN----LILGFPPF-----------------YPWAMLGGALWATGNILVVPIIKTIG 80 (254)
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHHH----HhcCCCcc-----------------eeHHHhhhhhhhcCceeehhHhhhhh
Confidence 3334588888988887655322211 12333221 22344443333333345566778889
Q ss_pred hhhhHHHHHHHHHHHHHHhhhh
Q 004646 285 FALALVVVALSGTILLWLYGSF 306 (740)
Q Consensus 285 ~~~~~~iv~~~~~~ilw~~~~f 306 (740)
...|++|-+.+-+++=|..+-|
T Consensus 81 Lglg~liW~s~n~l~Gw~~grf 102 (254)
T PF07857_consen 81 LGLGMLIWGSVNCLTGWASGRF 102 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999888888887766
No 254
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=28.75 E-value=1.8e+02 Score=28.07 Aligned_cols=15 Identities=7% Similarity=0.102 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 004646 252 VIWCSILSVIAMVGM 266 (740)
Q Consensus 252 ~~w~~~~~~~~m~~~ 266 (740)
+-|..+++.+|..+.
T Consensus 62 i~~ai~~~~~s~ll~ 76 (130)
T PF11026_consen 62 IRRAITLATLSALLV 76 (130)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444445555444433
No 255
>PF14752 RBP_receptor: Retinol binding protein receptor
Probab=28.73 E-value=8.3e+02 Score=29.90 Aligned_cols=77 Identities=25% Similarity=0.399 Sum_probs=47.9
Q ss_pred HHHHH---HHHHHHHhhhhhhHHHHHhh--------hhhhhhc--------------cchhHHHHHHhhhheeeeeeeeh
Q 004646 291 VVALS---GTILLWLYGSFWTTFFVIFL--------GGLAFKF--------------THERLALFITTMYSIYCAWTYVG 345 (740)
Q Consensus 291 iv~~~---~~~ilw~~~~f~~t~~~~i~--------g~~~f~l--------------~~~~~~~~~~~~y~~yc~~~~~g 345 (740)
|++++ +..++|...+.|.+..++++ +...|.- +|-|+ +-...|..|+.-+-+|
T Consensus 410 vlPi~~~~~~~~~~~l~~~~p~~~~~~~~~ilQ~~~a~~~Fl~~k~~~~~~~~~~~l~nRr~--f~~~~y~~f~~Nv~~G 487 (617)
T PF14752_consen 410 VLPILHGRNLLLFWILGSIWPFWLVLVLAVILQNILARFFFLQDKLGPADKGKPLALDNRRA--FHIFTYFLFFYNVLVG 487 (617)
T ss_pred HHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheecccccccCCCCceeechhh--HHHHHHHHHHHHHHHH
Confidence 45665 55677888887765544332 2223322 23332 3444778888888888
Q ss_pred hhHHHHHhhhhhhhHHHHHHHHhh
Q 004646 346 WLGLLLALNLSFVSSDALIFFLKS 369 (740)
Q Consensus 346 wlg~~l~~nl~flS~diL~~llq~ 369 (740)
.++-+.=+-++.+-|-++...+..
T Consensus 488 l~~~~~R~l~s~l~~~~~~~R~D~ 511 (617)
T PF14752_consen 488 LLSCLWRLLKSALFGIVHISRMDR 511 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 887777777777777777766653
No 256
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=28.63 E-value=2.9e+02 Score=34.70 Aligned_cols=13 Identities=31% Similarity=0.611 Sum_probs=6.9
Q ss_pred hhhHHHHHhhhhh
Q 004646 345 GWLGLLLALNLSF 357 (740)
Q Consensus 345 gwlg~~l~~nl~f 357 (740)
.|.+++|++-+-|
T Consensus 326 ~w~~ilLaL~Lif 338 (810)
T TIGR00844 326 VWRLIILSLVVIF 338 (810)
T ss_pred HHHHHHHHHHHHH
Confidence 4565555555443
No 257
>PRK01766 multidrug efflux protein; Reviewed
Probab=28.51 E-value=8.7e+02 Score=27.17 Aligned_cols=67 Identities=22% Similarity=0.379 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHhhhhhhhhccchhHHHHHHhh----------hhee---eeeeeehhhHHHHHhhhhhh
Q 004646 292 VALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTM----------YSIY---CAWTYVGWLGLLLALNLSFV 358 (740)
Q Consensus 292 v~~~~~~ilw~~~~f~~t~~~~i~g~~~f~l~~~~~~~~~~~~----------y~~y---c~~~~~gwlg~~l~~nl~fl 358 (740)
+.+...++.|+..++...++-+++.+.+-.+...++.+++..+ |... --.++..|+|.+++.=+..+
T Consensus 354 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~ 433 (456)
T PRK01766 354 VALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAI 433 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHH
Confidence 3333344455555555555566666666566665554444331 1111 12455666666666555544
No 258
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=27.76 E-value=85 Score=34.32 Aligned_cols=29 Identities=24% Similarity=0.495 Sum_probs=17.5
Q ss_pred cccccccccccceeeeeccCccccccccccc
Q 004646 552 RRIACKKCNNFHVWIETKKSKASARWCQECN 582 (740)
Q Consensus 552 R~ViC~kC~GsG~~~~t~r~~skar~C~sCk 582 (740)
...+|..|.+.=..+ .-.+...-+|+.|+
T Consensus 244 ~GepC~~CGt~I~k~--~~~gR~t~~CP~CQ 272 (273)
T COG0266 244 AGEPCRRCGTPIEKI--KLGGRSTFYCPVCQ 272 (273)
T ss_pred CCCCCCccCCEeEEE--EEcCCcCEeCCCCC
Confidence 345788888763222 22344567888885
No 259
>PF03739 YjgP_YjgQ: Predicted permease YjgP/YjgQ family; InterPro: IPR005495 Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this.; GO: 0016021 integral to membrane
Probab=27.68 E-value=5.7e+02 Score=27.61 Aligned_cols=93 Identities=13% Similarity=0.237 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhhhhhhcchhhhhhcchhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHH---------HHHHHHhhhh
Q 004646 219 FAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSV---IAMVGMFKFLMVLVVA---------ALVAFFIGFA 286 (740)
Q Consensus 219 ~~~~~~~~~~~w~~~~~rg~~~~~~~g~~~~~~~~w~~~~~~---~~m~~~~~~l~~~~~~---------~~~~~~~g~~ 286 (740)
+.-++.+.+++|..-.++-++.++.-|-. +..|+-..++.+ +.++.=+-+|++..++ .++....|..
T Consensus 12 ~~~l~~~~~i~~~~~l~~~l~~~~~~~~~-~~~i~~~~~~~lP~~l~~~lP~~~lia~~~~l~~L~~~~El~a~~a~GiS 90 (354)
T PF03739_consen 12 LLVLLSFTGIFLIIDLFELLDDFLSKGVP-FSDILKYILYNLPYILSLILPLAFLIAVLLTLGRLSRNNELVAMRASGIS 90 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHcCCC
Confidence 45567778888998899999999777633 333333333332 2222222222222221 1244455666
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhHHHH
Q 004646 287 LALVVVALSGTILLWLYGSFWTTFFV 312 (740)
Q Consensus 287 ~~~~iv~~~~~~ilw~~~~f~~t~~~ 312 (740)
+.-++.+++.+.++.....||+...+
T Consensus 91 ~~~l~~p~i~~~l~~~~~~~~~~~~i 116 (354)
T PF03739_consen 91 LKRLLRPIIIFALLLSLISFILSEWI 116 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 66666666555555555555554444
No 260
>COG5547 Small integral membrane protein [Function unknown]
Probab=27.67 E-value=1e+02 Score=26.58 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=16.1
Q ss_pred HHHHHHhhhhhhHHHHHhhhh
Q 004646 297 TILLWLYGSFWTTFFVIFLGG 317 (740)
Q Consensus 297 ~~ilw~~~~f~~t~~~~i~g~ 317 (740)
|-||.|-..||=|.+++|+++
T Consensus 20 iAili~t~GfwKtilviil~~ 40 (62)
T COG5547 20 IAILILTFGFWKTILVIILIL 40 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345667779999999988776
No 261
>PRK12768 CysZ-like protein; Reviewed
Probab=27.61 E-value=5.3e+02 Score=27.65 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=14.6
Q ss_pred hhhhhcchhhHHHHHHHHHH
Q 004646 239 DSFMRMGTTSFFSVIWCSIL 258 (740)
Q Consensus 239 ~~~~~~g~~~~~~~~w~~~~ 258 (740)
.++-.+++..|-.|+|-++-
T Consensus 7 ~a~~ql~~~~~r~vl~~~~~ 26 (240)
T PRK12768 7 KALARLLSPPMRSVFWKVLG 26 (240)
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 35567888888888887653
No 262
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=27.54 E-value=1.1e+03 Score=29.45 Aligned_cols=89 Identities=16% Similarity=0.175 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhcCch--hHHHHhhhhhhHhhhhhhhhHHHHHHHHHHHHHH---HHHHHH----hhhhhhcchhhhhh
Q 004646 173 VPTLKAAIELLERQSPM--LMTNIYNAHDYVSRKVQQVYPVALNHLGHFAKIM---LLLSML----WLDCTIRGIDSFMR 243 (740)
Q Consensus 173 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~---~~~~~~----w~~~~~rg~~~~~~ 243 (740)
-+.+.+...|+.+ |. ..+.+..--+.-. +--.|=++..|.+..|.|+ -|++-. |++-|-|.-.-..-
T Consensus 469 ~sa~~~~~~~l~~--p~~i~~~la~~lP~~a~--Ff~~yii~~g~~g~~~ellrl~~Li~~~i~~~~~~~t~~~~~e~~~ 544 (728)
T KOG1134|consen 469 GSALRQLLSILST--PRLIPKLLAAALPKQAS--FFITYIITSGWAGFAGELLRLVPLIIYLLKKLFLKSTPRDREERYE 544 (728)
T ss_pred HHHHHHHHHHhcC--HhHHHHHHhhhChhhHH--HHHHHHHHhccchhhHHHhcchhHHHHHHHHHHcccchhhhhhhcC
Confidence 3456677777776 33 1111111122222 2234556666666666655 233334 44444454433333
Q ss_pred cchhhHHHHH--HHHHHHHHHHHH
Q 004646 244 MGTTSFFSVI--WCSILSVIAMVG 265 (740)
Q Consensus 244 ~g~~~~~~~~--w~~~~~~~~m~~ 265 (740)
-|+.-+|-.+ |+.++-++.|++
T Consensus 545 p~~~~~~g~~yP~~~~~f~i~i~Y 568 (728)
T KOG1134|consen 545 PLSSFYFGTIYPRILLIFTIGICY 568 (728)
T ss_pred CccccchhhhccHHHHHHHHHHHH
Confidence 3333333332 444444444433
No 263
>TIGR02210 rodA_shape rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example.
Probab=27.52 E-value=7.4e+02 Score=27.66 Aligned_cols=30 Identities=20% Similarity=0.430 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhhhhhhcchhhhhhcchhh
Q 004646 219 FAKIMLLLSMLWLDCTIRGIDSFMRMGTTS 248 (740)
Q Consensus 219 ~~~~~~~~~~~w~~~~~rg~~~~~~~g~~~ 248 (740)
+..+++|++.....-.+.|-+.-+++|+.+
T Consensus 65 ~~~~~ll~l~~~~g~~v~Ga~rWi~lg~~~ 94 (352)
T TIGR02210 65 VLGLLLLVAVLLFGTTGKGAQRWIDLGFFR 94 (352)
T ss_pred HHHHHHHHHHHHcCCCcCCceeeeecCCcc
Confidence 344555555555555677888888888654
No 264
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=27.37 E-value=43 Score=25.88 Aligned_cols=30 Identities=20% Similarity=0.554 Sum_probs=15.2
Q ss_pred cccccccccccc-eeeeeccCcc-cccccccc
Q 004646 552 RRIACKKCNNFH-VWIETKKSKA-SARWCQEC 581 (740)
Q Consensus 552 R~ViC~kC~GsG-~~~~t~r~~s-kar~C~sC 581 (740)
..+.|+.|+.+. +...+..+.+ +.-.|..|
T Consensus 4 i~v~CP~C~s~~~v~k~G~~~~G~qryrC~~C 35 (36)
T PF03811_consen 4 IDVHCPRCQSTEGVKKNGKSPSGHQRYRCKDC 35 (36)
T ss_pred EeeeCCCCCCCCcceeCCCCCCCCEeEecCcC
Confidence 456777777665 3333332222 33346655
No 265
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism]
Probab=27.21 E-value=1.2e+03 Score=28.35 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=27.1
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHh
Q 004646 279 VAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIF 314 (740)
Q Consensus 279 ~~~~~g~~~~~~iv~~~~~~ilw~~~~f~~t~~~~i 314 (740)
+.--+|..+.+++++++..+++-+...+|+...+..
T Consensus 262 a~k~i~~~p~~~~~p~~~~~v~~~~i~~wv~~~~~l 297 (577)
T KOG1362|consen 262 ATKAIGSLPSTLFPPALTFFVLLLFISLWVFVALFL 297 (577)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445578888899999888888888888887665533
No 266
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.17 E-value=83 Score=28.84 Aligned_cols=31 Identities=26% Similarity=0.476 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhhh-------hhhHHHHHHHHHHH
Q 004646 269 FLMVLVVAALVAFFIGF-------ALALVVVALSGTIL 299 (740)
Q Consensus 269 ~l~~~~~~~~~~~~~g~-------~~~~~iv~~~~~~i 299 (740)
.|++|++..+|++...+ .|.+.+||+.||++
T Consensus 4 yllslgAGllVGiiyaLl~vrsPAPP~iAlvGllGilv 41 (93)
T COG4317 4 YLLSLGAGLLVGIIYALLKVRSPAPPAIALVGLLGILV 41 (93)
T ss_pred HHHHHhhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 46677777777766554 35666777777654
No 267
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=27.11 E-value=1.4e+02 Score=31.56 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 004646 208 VYPVALNHLGHFAKIMLL 225 (740)
Q Consensus 208 ~~p~~~~~~~~~~~~~~~ 225 (740)
+=....+|+.+++.++|+
T Consensus 177 ~~n~~~tW~lR~~G~llm 194 (248)
T PF07787_consen 177 SANNTLTWILRFIGWLLM 194 (248)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 334556677766655544
No 268
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=27.08 E-value=6e+02 Score=27.50 Aligned_cols=64 Identities=13% Similarity=0.178 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhhhhhcchhhh-hhcchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 004646 219 FAKIMLLLSMLWLDCTIRGIDSF-MRMGTTSFFSVIWCSILSV-IAMVGMFKFLMVLVVAALVAFF 282 (740)
Q Consensus 219 ~~~~~~~~~~~w~~~~~rg~~~~-~~~g~~~~~~~~w~~~~~~-~~m~~~~~~l~~~~~~~~~~~~ 282 (740)
..-++.++..+|+-|+.+==+.+ .-+.--+.|-+-=.+.+.+ ++++-...+|++++|.++|+.-
T Consensus 88 ~~~~vf~vt~l~l~c~~~~r~k~P~N~ilL~iFT~a~s~~~g~~~a~~~~~~VL~Al~IT~~V~~s 153 (237)
T KOG2322|consen 88 ALIVVFIVTYLSLACCEGLRRKSPVNLILLGIFTLAEAFMTGLVTAFYDAKVVLLALIITTVVVLS 153 (237)
T ss_pred HHHHHHHHHHHHHHccCcccccCcHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhheee
Confidence 34456677788888887533222 1122222222222222222 3344446678888888887653
No 269
>PRK04023 DNA polymerase II large subunit; Validated
Probab=27.06 E-value=46 Score=42.12 Aligned_cols=25 Identities=16% Similarity=0.367 Sum_probs=15.1
Q ss_pred ccccccCCceEEcccccccCCCCccccc
Q 004646 612 PCAYVCANSRIYNATDWYICQGMRCPAN 639 (740)
Q Consensus 612 pC~y~C~GsGv~d~teCa~CqG~G~v~~ 639 (740)
.|+ .|.-. ...+.|+.|.-.-....
T Consensus 653 fCP-~CG~~--~~~y~CPKCG~El~~~s 677 (1121)
T PRK04023 653 RCP-RCGIE--VEEDECEKCGREPTPYS 677 (1121)
T ss_pred eCc-cccCc--CCCCcCCCCCCCCCccc
Confidence 388 78432 23466999987654333
No 270
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=27.06 E-value=4.9e+02 Score=29.93 Aligned_cols=40 Identities=13% Similarity=0.003 Sum_probs=25.3
Q ss_pred hHHHHhhhhhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 004646 190 LMTNIYNAHDYVSRKVQQVYPVALNHLGHFAKIMLLLSML 229 (740)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 229 (740)
++..+.|.-......+=..=|-|.+|+.+.+-|+.+.+++
T Consensus 16 ~k~~~k~~i~~~i~~~l~~i~~~~~~~g~~~yl~~i~~~~ 55 (459)
T PF10337_consen 16 LKIMFKCWIAPWIALILCQIPPVARWLGTAGYLAPIISVI 55 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHhcchhHHHHHHHHH
Confidence 4444555555555555556677788888877777766654
No 271
>PRK01265 heat shock protein HtpX; Provisional
Probab=27.01 E-value=2.8e+02 Score=31.01 Aligned_cols=10 Identities=30% Similarity=0.537 Sum_probs=3.7
Q ss_pred HHHHHHHHHh
Q 004646 274 VVAALVAFFI 283 (740)
Q Consensus 274 ~~~~~~~~~~ 283 (740)
.+..+++.|+
T Consensus 25 ~~~~~~~~~~ 34 (324)
T PRK01265 25 ALAYAVAYYA 34 (324)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 272
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=26.95 E-value=2.6e+02 Score=26.68 Aligned_cols=13 Identities=23% Similarity=0.531 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhhh
Q 004646 273 LVVAALVAFFIGF 285 (740)
Q Consensus 273 ~~~~~~~~~~~g~ 285 (740)
|++.++++.+++.
T Consensus 82 li~g~~l~~~~~~ 94 (135)
T PF04246_consen 82 LIAGAVLGSYLGG 94 (135)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444555444
No 273
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=26.90 E-value=1.9e+02 Score=35.97 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHhhhhh
Q 004646 288 ALVVVALSGTILLWLYGSFWTTFFVIFLGGL 318 (740)
Q Consensus 288 ~~~iv~~~~~~ilw~~~~f~~t~~~~i~g~~ 318 (740)
|.++.+-.|+.++..+.-.-++.+.|++||.
T Consensus 459 g~~Lm~gv~~~Flf~~~l~l~~~~~Fl~G~~ 489 (806)
T PF05478_consen 459 GNFLMAGVGLSFLFSWFLMLLVLFYFLVGGN 489 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5554433233333333333345566666764
No 274
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=26.55 E-value=8.3e+02 Score=29.69 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=6.5
Q ss_pred hhHHHHHhhhhhhhH
Q 004646 346 WLGLLLALNLSFVSS 360 (740)
Q Consensus 346 wlg~~l~~nl~flS~ 360 (740)
|+|.+|..=..++++
T Consensus 586 ~~~~il~~~y~~i~~ 600 (743)
T TIGR00870 586 FVGLLLFGAYNVIMY 600 (743)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 275
>PF12084 DUF3561: Protein of unknown function (DUF3561); InterPro: IPR022721 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=26.32 E-value=1.1e+02 Score=29.15 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=27.8
Q ss_pred hhcchhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------hhhHHHHHHHHHHHHHHh
Q 004646 242 MRMGTTSF--FSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGF--------ALALVVVALSGTILLWLY 303 (740)
Q Consensus 242 ~~~g~~~~--~~~~w~~~~~~~~m~~~~~~l~~~~~~~~~~~~~g~--------~~~~~iv~~~~~~ilw~~ 303 (740)
+=.|++.+ |+-.|=.||.+.-. .|+++++.+.+=. .-++.++.+|+++.+|+-
T Consensus 44 l~YG~nTLfFfLYTWPFFLALmPv---------sVl~Gi~l~~ll~g~l~~s~~~t~l~V~~lFwllF~~L~ 106 (107)
T PF12084_consen 44 LVYGSNTLFFFLYTWPFFLALMPV---------SVLIGIALSSLLRGKLLWSLLATGLAVGCLFWLLFSWLS 106 (107)
T ss_pred hhhccchHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHcCCcEeeehhhHHHHHHHHHHHHHHHHc
Confidence 44565554 44579888887542 2333333333221 224555666666666654
No 276
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=26.29 E-value=2.3e+02 Score=29.26 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcchhhhh
Q 004646 214 NHLGHFAKIMLLLSMLWLDCTIRGIDSFM 242 (740)
Q Consensus 214 ~~~~~~~~~~~~~~~~w~~~~~rg~~~~~ 242 (740)
..++-+..++++.+-+|.-.....+..++
T Consensus 17 N~~~~l~G~~ll~~giw~~~~~~~~~~~~ 45 (237)
T KOG3882|consen 17 NLLFWLLGLLLLAVGIWLLADKGFLSSLL 45 (237)
T ss_pred HHHHHHHHHHHHHhhhheeEeccchhhcc
Confidence 34444555566666666654444444333
No 277
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=26.15 E-value=2.7e+02 Score=29.78 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHhhh
Q 004646 287 LALVVVALSGTILLWLYGS 305 (740)
Q Consensus 287 ~~~~iv~~~~~~ilw~~~~ 305 (740)
+-+++++++++++.|+|..
T Consensus 113 ~~~~~~~~~~~~~~~~Ys~ 131 (293)
T PRK06080 113 WWLLLLGLLCIAAAILYTG 131 (293)
T ss_pred HHHHHHHHHHHHHhhhhcC
Confidence 3456777888888888864
No 278
>TIGR03155 sulfolob_CbsB cytochrome b558/566, subunit B. Members of this protein family are CbsB, one subunit of a highly glycosylated, heterodimeric, mono-heme cytochrome b558/566, found in Sulfolobus acidocaldarius and several other members of the Sulfolobales, a branch of the Crenarchaeota.
Probab=25.95 E-value=8.1e+02 Score=27.00 Aligned_cols=47 Identities=19% Similarity=0.465 Sum_probs=30.5
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 004646 241 FMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFAL 287 (740)
Q Consensus 241 ~~~~g~~~~~~~~w~~~~~~~~m~~~~~~l~~~~~~~~~~~~~g~~~ 287 (740)
+.|+|..+|..-.-...+--+-++--+|.|+-+.++..+..++-+-+
T Consensus 42 L~~iGni~fY~~fv~l~lvSills~kykaLlplti~LlISpf~~LIp 88 (302)
T TIGR03155 42 LLRIGNVSFYIFFISLLLVSLLLSNKYKALLPLTIVLIISPFLALIP 88 (302)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcc
Confidence 56899999876443333333334555777888888888877765443
No 279
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=25.94 E-value=1.1e+02 Score=23.58 Aligned_cols=13 Identities=38% Similarity=0.442 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHH
Q 004646 288 ALVVVALSGTILL 300 (740)
Q Consensus 288 ~~~iv~~~~~~il 300 (740)
++.+|++.+++||
T Consensus 8 al~vv~iLt~~IL 20 (34)
T PF08113_consen 8 ALGVVMILTAFIL 20 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeeeHHHHHHHHH
Confidence 4555555555555
No 280
>PHA02898 virion envelope protein; Provisional
Probab=25.90 E-value=1.5e+02 Score=27.53 Aligned_cols=59 Identities=15% Similarity=0.274 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhhhccchhHHHHHHhhhheeee
Q 004646 265 GMFKFLMVLVVAALVAFFIGFA----LALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCA 340 (740)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~~g~~----~~~~iv~~~~~~ilw~~~~f~~t~~~~i~g~~~f~l~~~~~~~~~~~~y~~yc~ 340 (740)
+.+..=++|.+++.|-.|+-|. ++...- -++ -.--|++++++++|- ++..||..||.
T Consensus 13 ~vli~GIiLL~~ACIfAfidfSK~~~~~~~~w--Ral-----Sii~FIlgivl~lG~------------~ifs~y~r~C~ 73 (92)
T PHA02898 13 YVVAFGIILLIVACICAYIELSKSEKPADSAL--RSI-----SIISFILAIILILGI------------IFFKGYNMFCG 73 (92)
T ss_pred hHHHHHHHHHHHHHHHheehhhcCCCcchhHH--HHH-----HHHHHHHHHHHHHHH------------HHHHHHhhhcC
Confidence 4455555666666666666552 211110 000 111235577777775 45568999998
Q ss_pred ee
Q 004646 341 WT 342 (740)
Q Consensus 341 ~~ 342 (740)
..
T Consensus 74 ~~ 75 (92)
T PHA02898 74 GN 75 (92)
T ss_pred CC
Confidence 73
No 281
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=25.78 E-value=1.2e+03 Score=27.92 Aligned_cols=10 Identities=30% Similarity=0.687 Sum_probs=6.5
Q ss_pred HHHHHHHHHh
Q 004646 294 LSGTILLWLY 303 (740)
Q Consensus 294 ~~~~~ilw~~ 303 (740)
+|.+++-||.
T Consensus 454 if~~i~Y~~~ 463 (617)
T TIGR00955 454 LFTSITYWMI 463 (617)
T ss_pred HHHhhhheec
Confidence 5666677764
No 282
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=25.77 E-value=1.6e+02 Score=32.42 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHhhh
Q 004646 287 LALVVVALSGTILLWLYGS 305 (740)
Q Consensus 287 ~~~~iv~~~~~~ilw~~~~ 305 (740)
..++++|++|+++.|+|..
T Consensus 114 ~~~l~igl~g~~~~~~Yt~ 132 (317)
T PRK13387 114 WLLLVIGLICFAIGILYTG 132 (317)
T ss_pred HHHHHHHHHHHHHhhhhcC
Confidence 4467889999999999964
No 283
>PRK13706 conjugal transfer pilus acetylation protein TraX; Provisional
Probab=25.70 E-value=4.1e+02 Score=28.84 Aligned_cols=16 Identities=0% Similarity=0.135 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 004646 251 SVIWCSILSVIAMVGM 266 (740)
Q Consensus 251 ~~~w~~~~~~~~m~~~ 266 (740)
=|+|..++++..|..+
T Consensus 115 NI~fTLalgl~~l~~~ 130 (248)
T PRK13706 115 NILFAFAVAAQVLTWC 130 (248)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 5677777776666555
No 284
>PRK11204 N-glycosyltransferase; Provisional
Probab=25.42 E-value=7.3e+02 Score=27.55 Aligned_cols=13 Identities=8% Similarity=-0.020 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHh
Q 004646 173 VPTLKAAIELLER 185 (740)
Q Consensus 173 ~~~~~~~~~~~~~ 185 (740)
-.+++|=..|.+-
T Consensus 266 ~~~~~Qr~RW~~G 278 (420)
T PRK11204 266 KGLWKQRLRWAQG 278 (420)
T ss_pred HHHHHHHHHHhcC
Confidence 3355555555544
No 285
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.29 E-value=2.7e+02 Score=31.27 Aligned_cols=67 Identities=21% Similarity=0.222 Sum_probs=42.7
Q ss_pred HhhhhhhcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhh
Q 004646 229 LWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWT 308 (740)
Q Consensus 229 ~w~~~~~rg~~~~~~~g~~~~~~~~w~~~~~~~~m~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~f~~ 308 (740)
.|.....+-..-++.+|..|+.+-+|..++|++.=. +....-+-...-.+|.+.|+.+||..+.++.
T Consensus 288 ~~~~~~~~~~~~l~~~Gr~SL~VF~~~~vl~~~~~~-------------~~~~~~~~~~~~~~v~l~gl~~l~~~A~~~~ 354 (358)
T PF10129_consen 288 GWRWLRRRWLRPLILLGRHSLPVFCVGVVLSLAGQF-------------VLFTTPGSWWMQTLVNLAGLALLWAVAWFRE 354 (358)
T ss_pred ccHhHhhhhhhHHHHHccCchHHHHHHHHHHHHHHH-------------HHhccCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666788999999999999999888876511 1111111112223355667888888877654
No 286
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=24.75 E-value=1.8e+02 Score=29.98 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=8.9
Q ss_pred HHHHHHHHhhhhhhHHHHH
Q 004646 295 SGTILLWLYGSFWTTFFVI 313 (740)
Q Consensus 295 ~~~~ilw~~~~f~~t~~~~ 313 (740)
.|++-+=.|+.--+..|+|
T Consensus 54 la~~qIiVYvGAI~VLflF 72 (198)
T PRK06638 54 LGVVQIIVYVGAVMVLFLF 72 (198)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444555554444443
No 287
>PLN00012 chlorophyll synthetase; Provisional
Probab=24.70 E-value=3.3e+02 Score=31.01 Aligned_cols=20 Identities=25% Similarity=0.551 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHHHHHHHhhh
Q 004646 286 ALALVVVALSGTILLWLYGS 305 (740)
Q Consensus 286 ~~~~~iv~~~~~~ilw~~~~ 305 (740)
++-+++++++++++.|+|..
T Consensus 196 ~~~~~~l~l~gi~l~~~YS~ 215 (375)
T PLN00012 196 FPIVFYLALGGSLLSYIYSA 215 (375)
T ss_pred cHHHHHHHHHHHHHhhhhcC
Confidence 45567788888888999973
No 288
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=24.55 E-value=6.2e+02 Score=25.76 Aligned_cols=59 Identities=12% Similarity=0.222 Sum_probs=40.9
Q ss_pred hhhhHHHHHhhhhhhhhccchhHHHHHHhhhheeeeeeeehhhHHHHHhhhhhhhHHHHHHHHhh
Q 004646 305 SFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLKS 369 (740)
Q Consensus 305 ~f~~t~~~~i~g~~~f~l~~~~~~~~~~~~y~~yc~~~~~gwlg~~l~~nl~flS~diL~~llq~ 369 (740)
+||.+...+.+-=.+|++-.-=. .+++..-...+.++|+.+++=+-...+.++..++++
T Consensus 95 ~~~~~v~~I~~~D~~fS~DsV~a------~~~~~~~~~~li~~g~~i~i~~m~~~s~~~~~~~~~ 153 (176)
T TIGR03717 95 TLWAAIKTIVIADAVMSLDNVLA------VAGAAHGHLGLLIFGLLLSIPIIVWGSTLILKLMDR 153 (176)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH------HHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888888888888888765333 334444456677888888888766655677777764
No 289
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=24.54 E-value=9.5e+02 Score=26.25 Aligned_cols=22 Identities=5% Similarity=0.078 Sum_probs=12.8
Q ss_pred hhhhcchhhHHHHHHHHHHHHH
Q 004646 240 SFMRMGTTSFFSVIWCSILSVI 261 (740)
Q Consensus 240 ~~~~~g~~~~~~~~w~~~~~~~ 261 (740)
.+.+++....++++|..|..+.
T Consensus 187 ~~~~~~~~~~~l~~~~~f~~ly 208 (303)
T COG1295 187 ILLRLRLLVSLLLLTLGFFLLY 208 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566665666666665554
No 290
>PHA03237 envelope glycoprotein M; Provisional
Probab=24.53 E-value=1.9e+02 Score=33.64 Aligned_cols=66 Identities=17% Similarity=0.238 Sum_probs=56.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHH
Q 004646 246 TTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFF 311 (740)
Q Consensus 246 ~~~~~~~~w~~~~~~~~m~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~f~~t~~ 311 (740)
.+||++-.|-..+..+.+..++-++..+++=.++.+|+-.-+|..+=.++|..|||+-.-=+..-|
T Consensus 248 gNsF~v~~~~~v~~ai~~F~vl~iiyliv~E~vL~rYv~vl~G~~lG~lia~~~l~~p~~~Y~~~f 313 (424)
T PHA03237 248 ANSFHLTLWQTITVAIGVFVALTLMYLLIVEFVVSRYVHVLPGPALGLLIAYGMLAVTTHDYFNRF 313 (424)
T ss_pred hcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 478899999999999999999999999999999999999999999888899999998655555444
No 291
>COG3704 VirB6 Type IV secretory pathway, VirB6 components [Intracellular trafficking and secretion]
Probab=24.39 E-value=3.3e+02 Score=31.49 Aligned_cols=25 Identities=16% Similarity=0.301 Sum_probs=11.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHH
Q 004646 244 MGTTSFFSVIWCSILSVIAMVGMFK 268 (740)
Q Consensus 244 ~g~~~~~~~~w~~~~~~~~m~~~~~ 268 (740)
+|-.++.+.+|+.+++++.-...+|
T Consensus 191 ~~~l~~~~~~~~~~~~~i~~~i~~y 215 (406)
T COG3704 191 GGILVAILAFWVIVISLIGYAIILY 215 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555554444333333
No 292
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=24.34 E-value=25 Score=43.51 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=0.0
Q ss_pred ccccccCCceEEcccccccCCCCcccccee
Q 004646 612 PCAYVCANSRIYNATDWYICQGMRCPANTH 641 (740)
Q Consensus 612 pC~y~C~GsGv~d~teCa~CqG~G~v~~t~ 641 (740)
.|+ .|+- ....+.|+.|..........
T Consensus 682 ~Cp-~C~~--~~~~~~C~~C~~~~~~~~~~ 708 (900)
T PF03833_consen 682 VCP-DCGI--EVEEDECPKCGRETTSYSKQ 708 (900)
T ss_dssp ------------------------------
T ss_pred ecc-cccc--ccCccccccccccCccccee
Confidence 377 6753 33455899998875444433
No 293
>KOG4452 consensus Predicted membrane protein [Function unknown]
Probab=24.26 E-value=1.2e+02 Score=26.94 Aligned_cols=39 Identities=21% Similarity=0.410 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 004646 249 FFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFAL 287 (740)
Q Consensus 249 ~~~~~w~~~~~~~~m~~~~~~l~~~~~~~~~~~~~g~~~ 287 (740)
+|..-|..++-++|--+--.++==|.|++.+..|+||+.
T Consensus 30 ~fftAwFf~~~VtStKy~r~l~KELlIsl~aSvFlGFG~ 68 (79)
T KOG4452|consen 30 LFFTAWFFMIQVTSTKYNRNLLKELLISLTASVFLGFGS 68 (79)
T ss_pred HHHHHHHHheeEecchhhHHHHHHHHHHHHHHHHHhhhH
Confidence 345567777777776666556666777888888988865
No 294
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=24.14 E-value=34 Score=45.95 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=14.8
Q ss_pred cccccCCCCccccceeEEEEE
Q 004646 626 TDWYICQGMRCPANTHKPSFH 646 (740)
Q Consensus 626 teCa~CqG~G~v~~t~~vsV~ 646 (740)
.+|..|+|.++.+++-.+.++
T Consensus 1631 ~~C~~C~G~R~~~e~L~v~~~ 1651 (1809)
T PRK00635 1631 RPCPTCSGFRIQPLAQEVVYE 1651 (1809)
T ss_pred cCCCCCCCcCCCHHHHhheeC
Confidence 457788999887777555543
No 295
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=24.13 E-value=8.7e+02 Score=30.13 Aligned_cols=160 Identities=14% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHhhhhhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhcchhhHHHHHHH---HHHHHHHHHHHH
Q 004646 191 MTNIYNAHDYVSRKVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWC---SILSVIAMVGMF 267 (740)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~w~~~~~rg~~~~~~~g~~~~~~~~w~---~~~~~~~m~~~~ 267 (740)
++.+....|... +.+-|..+..-+.+-....+++++.-+-..+-|+|.++=-.....+.-=|. .-.+++..+..+
T Consensus 136 ~~~~~~~~~~~~--~~~~~d~~l~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~l 213 (742)
T TIGR01299 136 EGEAERRADEEE--LAQQYELIIQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYL 213 (742)
T ss_pred cchhhhhhhhhH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhhhccchhHHHHHHhhhh-eeeeeeeehh
Q 004646 268 KFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYS-IYCAWTYVGW 346 (740)
Q Consensus 268 ~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~f~~t~~~~i~g~~~f~l~~~~~~~~~~~~y~-~yc~~~~~gw 346 (740)
-+++...+++.+.--+|....+++ +++...+..+...|......++++..+.-+-..-...++.++.+ ++..+.+...
T Consensus 214 G~iiG~li~G~LsDR~GRR~~lii-~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~ 292 (742)
T TIGR01299 214 GMMVGAFFWGGLADKLGRKQCLLI-CLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEH 292 (742)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_pred hHHHHHh
Q 004646 347 LGLLLAL 353 (740)
Q Consensus 347 lg~~l~~ 353 (740)
++++.+.
T Consensus 293 ~g~~~~~ 299 (742)
T TIGR01299 293 LSWLCMF 299 (742)
T ss_pred HHHHHHH
No 296
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=24.09 E-value=3.7e+02 Score=29.65 Aligned_cols=18 Identities=22% Similarity=0.205 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 004646 270 LMVLVVAALVAFFIGFAL 287 (740)
Q Consensus 270 l~~~~~~~~~~~~~g~~~ 287 (740)
-++++++..+...+|+..
T Consensus 144 ~~vlg~~~a~~~l~gw~A 161 (294)
T PRK12873 144 QAILALCWGFAVLIPWAA 161 (294)
T ss_pred hHHHHHHHHhHHHHHHHH
Confidence 467777777777777654
No 297
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=23.99 E-value=3.2e+02 Score=33.38 Aligned_cols=107 Identities=24% Similarity=0.310 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhhhccchh
Q 004646 247 TSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHER 326 (740)
Q Consensus 247 ~~~~~~~w~~~~~~~~m~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~f~~t~~~~i~g~~~f~l~~~~ 326 (740)
+++..|.|.-=|...++.++ -+|..+++-++.+.++|--+--+-|++ |+++ =+-.+-+++||..|..|-..
T Consensus 7 ~~~~~ifw~wnlt~~~l~~~-~i~pf~~~p~i~~~~~g~~~~~~a~~~--i~li------aip~i~~~ig~~~f~~~p~~ 77 (952)
T TIGR02921 7 ACCEGIFWFWNLTFASLTGL-GILPFFGLPAILAAAIGDHPIEFALAL--ILLI------AIPAICIGIGGTCFLKNPTA 77 (952)
T ss_pred HHHHHHHHHHHHHHHHHhhh-hhhhccccHHHHHHHcccchHHHHHHH--HHHH------HHHHHHhhhcchhhhcCcHH
Confidence 45566777655554444332 345555666666666666553333322 1111 12345567888777766544
Q ss_pred HHHHHHhhhheeeeeeeehhhHHHHHhhhhhhhHHHHHH
Q 004646 327 LALFITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIF 365 (740)
Q Consensus 327 ~~~~~~~~y~~yc~~~~~gwlg~~l~~nl~flS~diL~~ 365 (740)
+ |-..|.+----+...-+.|||.++|.=-|+.||+.
T Consensus 78 l---iklfygve~pi~~i~l~~lflirel~p~~s~ili~ 113 (952)
T TIGR02921 78 L---IKLFYGVEAPIFFICLLRLFLIRELNPASSHILIN 113 (952)
T ss_pred H---HHHHHcccchHHHHHHHHHHHHHhcCcchhhHHHH
Confidence 3 23333332222233344677888876555545443
No 298
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=23.98 E-value=6.7e+02 Score=32.80 Aligned_cols=15 Identities=13% Similarity=0.171 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhcCch
Q 004646 175 TLKAAIELLERQSPM 189 (740)
Q Consensus 175 ~~~~~~~~~~~~~~~ 189 (740)
...|=.-||-+++|+
T Consensus 426 ~L~~~lFWv~s~~Pi 440 (1109)
T PRK10929 426 ATHRYLFWVADVSPI 440 (1109)
T ss_pred HHHHhhhccCCCCCC
Confidence 456667899999999
No 299
>PRK10649 hypothetical protein; Provisional
Probab=23.82 E-value=3.2e+02 Score=32.75 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=8.3
Q ss_pred hhcchhhHHHHHHHHHH
Q 004646 242 MRMGTTSFFSVIWCSIL 258 (740)
Q Consensus 242 ~~~g~~~~~~~~w~~~~ 258 (740)
+|+=.+.+.+|+|++++
T Consensus 67 ~~~~~~~~~~vl~~~~l 83 (577)
T PRK10649 67 IRIIAAVIGVVLWAASL 83 (577)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45533444455565543
No 300
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=23.80 E-value=3.4e+02 Score=29.34 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhh
Q 004646 209 YPVALNHLGHFAKIMLLLSMLWLDCT 234 (740)
Q Consensus 209 ~p~~~~~~~~~~~~~~~~~~~w~~~~ 234 (740)
-+....-..|+|.++-+++.+|+|..
T Consensus 36 ~~~~f~v~lhlGtllAvl~~fr~~i~ 61 (259)
T PF02673_consen 36 PGLAFDVFLHLGTLLAVLIYFRKDIW 61 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678999999999999999964
No 301
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=23.68 E-value=1.9e+02 Score=29.09 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=20.5
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHhhhhhhHHHHHH
Q 004646 261 IAMVGMFKFL--MVLVVAALVAFFIGFALALVVVAL 294 (740)
Q Consensus 261 ~~m~~~~~~l--~~~~~~~~~~~~~g~~~~~~iv~~ 294 (740)
...+-++|++ +.|.++++...+++++=.+.++++
T Consensus 75 L~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~~~~~ 110 (150)
T COG3086 75 LKSALLVYIFPLVGLFLGAILAQYLFFSELIVIFGA 110 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3344455554 445556666778888776666544
No 302
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=23.65 E-value=7.6e+02 Score=25.71 Aligned_cols=63 Identities=22% Similarity=0.403 Sum_probs=31.5
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh------hhhhcchhhhhhcchhhHHHHHHHHHHHHHHHHH
Q 004646 201 VSRKVQQVYPVALNHLGHFAKIMLLLSMLWL------DCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVG 265 (740)
Q Consensus 201 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~w~------~~~~rg~~~~~~~g~~~~~~~~w~~~~~~~~m~~ 265 (740)
-+++|+.||=++-..=..+-.++++-.++|+ -..+=-+-+-..+...-..-.+||. |++.+..
T Consensus 19 hRerVas~Yq~sa~~Ks~lk~l~~~h~ll~l~~~a~v~~~~L~~i~~~~~p~p~~Wey~~~l--S~ip~~~ 87 (186)
T PF07086_consen 19 HRERVASHYQMSAQLKSRLKKLILFHALLWLLMAAKVSVDILLEISELQIPSPYQWEYIWCL--SLIPSLL 87 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHH--HHHHHHH
Confidence 4677888888876555555555544444443 2222122222333444344445654 5555433
No 303
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=23.50 E-value=35 Score=29.84 Aligned_cols=39 Identities=10% Similarity=0.140 Sum_probs=25.6
Q ss_pred ceeEEEEEEcccccCC-CcccccCCC-CCCCCCCCCCcccc
Q 004646 639 NTHKPSFHVNTSVTSK-HNTSKGTSS-GQRGGRMPPPNLEE 677 (740)
Q Consensus 639 ~t~~vsV~IPaGv~d~-~~rikG~g~-~~r~g~~pgdl~~e 677 (740)
..+.+.|.||+|+.++ ..+++|.|- ..+++.-.||++++
T Consensus 25 ~g~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~ 65 (81)
T PF01556_consen 25 DGKTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVK 65 (81)
T ss_dssp TS-EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEE
T ss_pred CCCEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEE
Confidence 3368999999999998 568888775 22332234788776
No 304
>TIGR02975 phageshock_pspG phage shock protein G. This protein previously was designated yjbO in E. coli. It is found only in genomes that have the phage shock operon (psp), but only rarely is encoded near other psp genes. The psp regulon is upregulated in response to a number of stress conditions, including ethanol, expression of the filamentous phage secretin protein IV and other secretins, and heat shock.
Probab=23.43 E-value=4.7e+02 Score=23.00 Aligned_cols=9 Identities=22% Similarity=0.862 Sum_probs=5.4
Q ss_pred HHHHHHhhh
Q 004646 297 TILLWLYGS 305 (740)
Q Consensus 297 ~~ilw~~~~ 305 (740)
++..|+|-+
T Consensus 54 ~v~vW~~r~ 62 (64)
T TIGR02975 54 VVVVWFIKS 62 (64)
T ss_pred HHHHHHhhh
Confidence 556677654
No 305
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=23.40 E-value=1.5e+02 Score=32.11 Aligned_cols=20 Identities=20% Similarity=0.184 Sum_probs=11.3
Q ss_pred ccccceeccccccccccccccc
Q 004646 122 TCGVRIENARRGRKHRKTGLGW 143 (740)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ 143 (740)
++-||. .+.|+|-+|=-=++
T Consensus 94 ATPIr~--aPpGKKYVRCPCNC 113 (256)
T PF09788_consen 94 ATPIRN--APPGKKYVRCPCNC 113 (256)
T ss_pred cccccC--CCCCCeeEecCCce
Confidence 334443 78888876643333
No 306
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=23.24 E-value=2.5e+02 Score=29.38 Aligned_cols=25 Identities=20% Similarity=0.562 Sum_probs=11.9
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHHHH
Q 004646 240 SFMRMGTTSFFSVIWCSILSVIAMVG 265 (740)
Q Consensus 240 ~~~~~g~~~~~~~~w~~~~~~~~m~~ 265 (740)
+++-+|-.=++ |+++++++.++++|
T Consensus 56 ~wL~vGkvPlL-I~L~l~l~~F~l~G 80 (202)
T PF07290_consen 56 SWLNVGKVPLL-IWLVLLLSSFGLIG 80 (202)
T ss_pred HHhccCccHHH-HHHHHHHHHHHHHH
Confidence 34444544332 33355555666554
No 307
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=23.22 E-value=5e+02 Score=24.56 Aligned_cols=17 Identities=24% Similarity=0.577 Sum_probs=10.3
Q ss_pred eeeeeeeehhhHHHHHh
Q 004646 337 IYCAWTYVGWLGLLLAL 353 (740)
Q Consensus 337 ~yc~~~~~gwlg~~l~~ 353 (740)
-|.-...++|.+.++.+
T Consensus 148 ~~gwSf~la~~a~~~~l 164 (172)
T PF13903_consen 148 SYGWSFWLAWVAFILLL 164 (172)
T ss_pred EECHHHHHHHHHHHHHH
Confidence 45555567777766654
No 308
>MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=23.00 E-value=1.5e+02 Score=30.27 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=6.4
Q ss_pred HHHHHhhhhhhHHHH
Q 004646 298 ILLWLYGSFWTTFFV 312 (740)
Q Consensus 298 ~ilw~~~~f~~t~~~ 312 (740)
+-+=.|..--+.-|+
T Consensus 54 ~qIiVYvGAI~VLfl 68 (186)
T MTH00057 54 IFLIVYVGAIAILFL 68 (186)
T ss_pred HHHHHHHhHHHHHHH
Confidence 333345444444444
No 309
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=22.70 E-value=1.6e+02 Score=31.87 Aligned_cols=17 Identities=29% Similarity=0.901 Sum_probs=11.4
Q ss_pred hhcchhhHHHHHHHHHHHH
Q 004646 242 MRMGTTSFFSVIWCSILSV 260 (740)
Q Consensus 242 ~~~g~~~~~~~~w~~~~~~ 260 (740)
+|+|+-..| ||..|+++
T Consensus 155 L~vGnd~~F--~~af~vAf 171 (262)
T KOG4812|consen 155 LRVGNDGIF--MWAFIVAF 171 (262)
T ss_pred cccccchHH--HHHHHHHH
Confidence 578887544 67776654
No 310
>PRK10774 cell division protein FtsW; Provisional
Probab=22.62 E-value=6.2e+02 Score=29.07 Aligned_cols=30 Identities=20% Similarity=0.530 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhhhhhcchhhhhhcchhh
Q 004646 219 FAKIMLLLSMLWLDCTIRGIDSFMRMGTTS 248 (740)
Q Consensus 219 ~~~~~~~~~~~w~~~~~rg~~~~~~~g~~~ 248 (740)
+..+++|+++.=..-.+-|-++-+++|..+
T Consensus 106 ~~~l~llllv~~~g~~~~Ga~rWi~iG~~~ 135 (404)
T PRK10774 106 LGSIIMLLIVLVVGSSVNGASRWIALGPLR 135 (404)
T ss_pred HHHHHHHHHHHHcCCccCCcceEEEeCCcc
Confidence 344444444443566677888888898754
No 311
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.60 E-value=92 Score=34.18 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=13.5
Q ss_pred cccccccccccceeeeeccCccccccccccc
Q 004646 552 RRIACKKCNNFHVWIETKKSKASARWCQECN 582 (740)
Q Consensus 552 R~ViC~kC~GsG~~~~t~r~~skar~C~sCk 582 (740)
|.++|..|+|+.-.......+.....|..|+
T Consensus 239 rFlpC~~C~GS~kv~~~~~~~~~~~rC~~CN 269 (281)
T KOG2824|consen 239 RFLPCSNCHGSCKVHEEEEDDGGVLRCLECN 269 (281)
T ss_pred ceEecCCCCCceeeeeeccCCCcEEECcccC
Confidence 3445555555543222122334445555554
No 312
>PRK09776 putative diguanylate cyclase; Provisional
Probab=22.45 E-value=6.6e+02 Score=31.38 Aligned_cols=146 Identities=12% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhcchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhhhhhH
Q 004646 220 AKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVV----------AALVAFFIGFALAL 289 (740)
Q Consensus 220 ~~~~~~~~~~w~~~~~rg~~~~~~~g~~~~~~~~w~~~~~~~~m~~~~~~l~~~~~----------~~~~~~~~g~~~~~ 289 (740)
..+.+++....+-+.+=|.-.+.-++...|+.. |..-+.--++..++.+-+++.+ .............+
T Consensus 104 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~w~~~~~~g~l~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1092)
T PRK09776 104 DWLRLALGSAIVPPLLGGVLVVLLTPGDDPLRA-FLIWVLSEAIGMLALVPLGLLFKPHYLLRHRNPRLLFESLLTLAIT 182 (1092)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhH-HHHHHHHHHHHHHHHhhHhhhcchHHHhhhcccchHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHhhhhhhhhccchhHHHHHHhhhheeeeeee--------------ehhhHHHHHhhh
Q 004646 290 VVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTY--------------VGWLGLLLALNL 355 (740)
Q Consensus 290 ~iv~~~~~~ilw~~~~f~~t~~~~i~g~~~f~l~~~~~~~~~~~~y~~yc~~~~--------------~gwlg~~l~~nl 355 (740)
++++.++..-+-+...|+ .+.++++...+...-+.++.+++.++..+-.... ..|+-+++.+..
T Consensus 183 ~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (1092)
T PRK09776 183 LTLSWLALLYLPWPFTFI--IVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSLLATPRTYLMSHMPWLPFLLILLP 260 (1092)
T ss_pred HHHHHHHHHhCCCcHHHH--HHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCCccccCCcchhhhhhhhHHHHHHHHHH
Q ss_pred hhhhHHHHHHHHh
Q 004646 356 SFVSSDALIFFLK 368 (740)
Q Consensus 356 ~flS~diL~~llq 368 (740)
+.+...+.....+
T Consensus 261 ~~~~~~~~~~~r~ 273 (1092)
T PRK09776 261 ANIMTMVMYAFRA 273 (1092)
T ss_pred HHHHHHHHHHHHH
No 313
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=22.41 E-value=38 Score=38.87 Aligned_cols=19 Identities=5% Similarity=-0.109 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHHHHHhC
Q 004646 453 NVDVSILKREYRKKAMLVH 471 (740)
Q Consensus 453 ~As~~eIKKAYRkLAlk~H 471 (740)
+++.++|.+.+..|..+++
T Consensus 164 ~a~~eel~~el~~L~~~w~ 182 (414)
T TIGR00757 164 GASEEALIKDLEFLLRKWE 182 (414)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 5788888888888877763
No 314
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=22.24 E-value=2.5e+02 Score=30.09 Aligned_cols=20 Identities=30% Similarity=0.688 Sum_probs=12.8
Q ss_pred hhheeeeeeeehhhHHHHHh
Q 004646 334 MYSIYCAWTYVGWLGLLLAL 353 (740)
Q Consensus 334 ~y~~yc~~~~~gwlg~~l~~ 353 (740)
+.++..-..-+|++|++++-
T Consensus 307 l~~~l~g~~~~G~~G~~l~~ 326 (341)
T TIGR02872 307 LISMYIGLKLFGFLGLIFGP 326 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444567888888864
No 315
>PRK08156 type III secretion system protein SpaS; Validated
Probab=22.19 E-value=1.2e+03 Score=26.60 Aligned_cols=16 Identities=13% Similarity=-0.039 Sum_probs=11.0
Q ss_pred hhhhhhhHHHHHHHHh
Q 004646 353 LNLSFVSSDALIFFLK 368 (740)
Q Consensus 353 ~nl~flS~diL~~llq 368 (740)
+-+.|+-..++++++|
T Consensus 185 ~~~~~lvia~~D~~~Q 200 (361)
T PRK08156 185 FLACALIVLILDFIAE 200 (361)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345566668888888
No 316
>PF02361 CbiQ: Cobalt transport protein; InterPro: IPR003339 Cobalt transport proteins are most often found in cobalamin (vitamin B12) biosynthesis operons. Salmonella typhimurium synthesizes cobalamin (vitamin B12) de novo under anaerobic conditions. Not all Salmonella and Pseudomonas cobalamin synthetic genes have apparent homologs in the other species suggesting that the cobalamin biosynthetic pathways differ between the two organisms [].; GO: 0015087 cobalt ion transmembrane transporter activity, 0006824 cobalt ion transport, 0009236 cobalamin biosynthetic process
Probab=22.17 E-value=7.8e+02 Score=24.44 Aligned_cols=7 Identities=14% Similarity=0.311 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 004646 458 ILKREYR 464 (740)
Q Consensus 458 eIKKAYR 464 (740)
+|++|.|
T Consensus 164 ~i~~A~~ 170 (224)
T PF02361_consen 164 RIREAQR 170 (224)
T ss_pred HHHHHHH
Confidence 3444433
No 317
>KOG4455 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.08 E-value=4.2e+02 Score=25.50 Aligned_cols=66 Identities=26% Similarity=0.407 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhhhccchhHHHHHHhh
Q 004646 256 SILSVIAMVGMF-KFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTM 334 (740)
Q Consensus 256 ~~~~~~~m~~~~-~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~f~~t~~~~i~g~~~f~l~~~~~~~~~~~~ 334 (740)
-||.+++.+|.+ |+|..++.+..++.-.|..++.|.-. |. .+|+.+++ ||+ .-+|+.-|-.
T Consensus 42 GILGltg~~GFi~Y~l~~~i~~il~~~K~~~~~~kyf~s-------~~--~~f~~~f~---~Gl------~tyVl~Wtf~ 103 (110)
T KOG4455|consen 42 GILGLTGLHGFIFYFLSVLILSILLVLKAGGQWGKYFQS-------RR--NLFTESFL---GGL------TTYVLAWTFF 103 (110)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHCCCHHhhcCc-------hh--HHHHHHHh---chH------HHHHHHHHHH
Confidence 455555555543 33333333334444445555444332 11 55555554 442 2344555555
Q ss_pred hheee
Q 004646 335 YSIYC 339 (740)
Q Consensus 335 y~~yc 339 (740)
|++|.
T Consensus 104 Y~lv~ 108 (110)
T KOG4455|consen 104 YGLVH 108 (110)
T ss_pred hhhhc
Confidence 66654
No 318
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=21.99 E-value=2.4e+02 Score=28.04 Aligned_cols=6 Identities=17% Similarity=0.213 Sum_probs=2.4
Q ss_pred HHHHHH
Q 004646 290 VVVALS 295 (740)
Q Consensus 290 ~iv~~~ 295 (740)
|++||+
T Consensus 82 YllPLl 87 (154)
T PRK10862 82 YMTPLV 87 (154)
T ss_pred HHHHHH
Confidence 334443
No 319
>CHL00016 ndhG NADH dehydrogenase subunit 6
Probab=21.89 E-value=2.6e+02 Score=28.55 Aligned_cols=11 Identities=18% Similarity=0.154 Sum_probs=4.3
Q ss_pred HHHHHhhhhhh
Q 004646 298 ILLWLYGSFWT 308 (740)
Q Consensus 298 ~ilw~~~~f~~ 308 (740)
+-+=.|+.--+
T Consensus 61 ~qIiVYvGAI~ 71 (182)
T CHL00016 61 AQLLIYVGAIN 71 (182)
T ss_pred HHHHHHHHHHH
Confidence 33334444333
No 320
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=21.88 E-value=66 Score=35.71 Aligned_cols=30 Identities=20% Similarity=0.426 Sum_probs=15.3
Q ss_pred cccccccccccce--ee-eeccCcccccccccc
Q 004646 552 RRIACKKCNNFHV--WI-ETKKSKASARWCQEC 581 (740)
Q Consensus 552 R~ViC~kC~GsG~--~~-~t~r~~skar~C~sC 581 (740)
..-.|+-|++.-. .+ .....+.+.-.|.-|
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC 218 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLC 218 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCC
Confidence 3456888877531 01 011233455567777
No 321
>KOG0916 consensus 1,3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]
Probab=21.81 E-value=3.1e+02 Score=36.47 Aligned_cols=124 Identities=15% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhh---hhcchhhhhhcchhhHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhh
Q 004646 221 KIMLLLSMLWLDC---TIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGM-------------FKFLMVLVVAALVAFFIG 284 (740)
Q Consensus 221 ~~~~~~~~~w~~~---~~rg~~~~~~~g~~~~~~~~w~~~~~~~~m~~~-------------~~~l~~~~~~~~~~~~~g 284 (740)
++-.|..+.|-|+ +++=|.+.++|.++ |..||...++++=+... .-.-=.+..+...+..++
T Consensus 414 ~~qal~iVaW~dvf~k~l~~f~Twl~l~q~--fa~iWvi~~~v~y~~s~~nspt~y~~~~~~yl~p~~la~~~~~~p~~~ 491 (1679)
T KOG0916|consen 414 RYQALIIVAWNDVFYKVLSEFRTWLHLLQN--FARIWVIHFSVFYYYSVYNSPTLYTKNVHIYLGPQPLAAVLWAVPALR 491 (1679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCceeEEEeeeeecCCcHHHHHHHHHHHHH
Q ss_pred hhhhHHHHHHHHHHHHHHhh------------hhhh--HHHHHhhhhhhhhccchhHHHHHHhhhheeeeeeeehhhHHH
Q 004646 285 FALALVVVALSGTILLWLYG------------SFWT--TFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLL 350 (740)
Q Consensus 285 ~~~~~~iv~~~~~~ilw~~~------------~f~~--t~~~~i~g~~~f~l~~~~~~~~~~~~y~~yc~~~~~gwlg~~ 350 (740)
-+..-++ =+.+.++.|... .+|. ..++++|+...|. +..-.-+-|++||.- .+|=.|++
T Consensus 492 ~~v~~~~-~~~~~~~~W~~~pr~~~Gph~~~~r~~~n~~~v~~~w~Pvv~V-----y~mdtqiwy~i~s~l-vggivg~f 564 (1679)
T KOG0916|consen 492 GTVESLI-MLIATLFEWWFVPRKFPGPHEFFPRFKNNIGVVIANWAPVVLV-----YFMDTQIWYAIFSTL-VGGIVGFF 564 (1679)
T ss_pred hHHHHHH-HHHHHHHhhhcccccCCCchhhhHHHHHHHHHHHHHHhhHhhe-----eehhhHHHHHHHHHH-HHHHHHHH
Q ss_pred HHh
Q 004646 351 LAL 353 (740)
Q Consensus 351 l~~ 353 (740)
.++
T Consensus 565 ~~l 567 (1679)
T KOG0916|consen 565 FHL 567 (1679)
T ss_pred HHh
No 322
>COG1807 ArnT 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]
Probab=21.81 E-value=9e+02 Score=28.10 Aligned_cols=130 Identities=18% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHhhhhh---hcc-hhhhhhcchhhHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 004646 227 SMLWLDCT---IRG-IDSFMRMGTTSFFSVIWCSILSVIA---------MVGMFKFLMVLVVAALVAFFIGFALALVVVA 293 (740)
Q Consensus 227 ~~~w~~~~---~rg-~~~~~~~g~~~~~~~~w~~~~~~~~---------m~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~ 293 (740)
+.+|+--. +-| ..-.+|++++-..++.++++..+.. .+.+++.++-+++...-...+-.....+++.
T Consensus 67 l~~Wl~a~~~~lfG~~~~~~rl~~~l~~~~~~~l~y~l~k~l~~~~~a~~aali~~~~p~~~~~~~~~~~D~~l~~f~~l 146 (535)
T COG1807 67 LVYWLQALSYLLFGVNEWSARLPSALAGALTALLVYWLAKRLFGRLAALLAALILLLTPLFFLIGRLALLDAALAFFLTL 146 (535)
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhHHHhhhHHHHHHHHH
Q ss_pred HHHHHHHHHh---hhhhhHHHHHhhhhhhhhccchhHHHHHHhhhheeeeeee------ehhhHHHHHhhhh
Q 004646 294 LSGTILLWLY---GSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTY------VGWLGLLLALNLS 356 (740)
Q Consensus 294 ~~~~~ilw~~---~~f~~t~~~~i~g~~~f~l~~~~~~~~~~~~y~~yc~~~~------~gwlg~~l~~nl~ 356 (740)
-+..+.++.. ..-|...+.+.+|...-+.--.-+++....+..++..+.+ ..|+|+++++-++
T Consensus 147 a~~~~~~~~~~~~~~~~~l~~gl~lGL~~ltKg~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~g~~l~~l~~ 218 (535)
T COG1807 147 ALALLYLALRARGKLKWLLLLGLALGLGFLTKGPGALLLPLILLLLLLAPRLRRLLRDLRLWLGLLLGLLPV 218 (535)
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
No 323
>PRK10649 hypothetical protein; Provisional
Probab=21.80 E-value=93 Score=37.14 Aligned_cols=47 Identities=15% Similarity=0.078 Sum_probs=23.5
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhh
Q 004646 259 SVIAMVGMF-KFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGS 305 (740)
Q Consensus 259 ~~~~m~~~~-~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~ 305 (740)
+.++..|++ ++...-++.-+..++.|+..-.-+-..+-+-.||+|.-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (577)
T PRK10649 13 SWKALGWALLFFWFFSTLLQAIIYISGYSGTNGFRDALLFSSLWLIPV 60 (577)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHH
Confidence 444544543 33334444444556666555444444444555666544
No 324
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=21.69 E-value=4.6e+02 Score=26.94 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=9.7
Q ss_pred Hhhhhhhcchhhhhhcc
Q 004646 229 LWLDCTIRGIDSFMRMG 245 (740)
Q Consensus 229 ~w~~~~~rg~~~~~~~g 245 (740)
++.-|.+.|+-.++.-+
T Consensus 90 ~~if~~~~gi~~~f~~~ 106 (206)
T PF06570_consen 90 FGIFSLLFGIMGFFSPK 106 (206)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 44566666666555443
No 325
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=21.58 E-value=2.7e+02 Score=35.21 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004646 252 VIWCSILSVIAMVGMFKFLMVLVVAALV 279 (740)
Q Consensus 252 ~~w~~~~~~~~m~~~~~~l~~~~~~~~~ 279 (740)
-+|-.++-++++++++-.|..+|+..++
T Consensus 16 r~WP~l~~~l~v~~lfla~~~~Gl~~~l 43 (851)
T TIGR02302 16 RLWPHLLRVMSLVGLFLSLGWAGLFLAL 43 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhh
Confidence 3455555555666666666666776666
No 326
>PRK06459 hydrogenase 4 subunit B; Validated
Probab=21.53 E-value=2.8e+02 Score=33.47 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=8.4
Q ss_pred hhHHHHHhhhhhhhHHHHH
Q 004646 346 WLGLLLALNLSFVSSDALI 364 (740)
Q Consensus 346 wlg~~l~~nl~flS~diL~ 364 (740)
|+.+++..++.-++.=.|+
T Consensus 94 l~~f~v~wEl~~l~sy~LI 112 (585)
T PRK06459 94 YLLFLAGWEIMTIPSYVAI 112 (585)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444455444443443
No 327
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=21.52 E-value=8.4e+02 Score=25.82 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=14.5
Q ss_pred hhhhhHHHHHhhhhhhhhccc
Q 004646 304 GSFWTTFFVIFLGGLAFKFTH 324 (740)
Q Consensus 304 ~~f~~t~~~~i~g~~~f~l~~ 324 (740)
.+||.+...|++.=.+|++..
T Consensus 93 ~~f~~av~~I~~~DlvFSlDS 113 (215)
T TIGR03716 93 SGFWRTVLKVELMDIAFSVDS 113 (215)
T ss_pred chHHHHHHHHHHHHHHHHhhh
Confidence 358877777777777777643
No 328
>PF14110 DUF4282: Domain of unknown function (DUF4282)
Probab=21.51 E-value=2.8e+02 Score=25.09 Aligned_cols=7 Identities=29% Similarity=0.434 Sum_probs=2.6
Q ss_pred HHHHHHh
Q 004646 362 ALIFFLK 368 (740)
Q Consensus 362 iL~~llq 368 (740)
.++-+.+
T Consensus 72 ~~i~~fr 78 (90)
T PF14110_consen 72 FLIAIFR 78 (90)
T ss_pred HHHHHHH
Confidence 3333333
No 329
>COG4325 Predicted membrane protein [Function unknown]
Probab=21.40 E-value=6e+02 Score=29.58 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004646 249 FFSVIWCSILSVIAMVGM 266 (740)
Q Consensus 249 ~~~~~w~~~~~~~~m~~~ 266 (740)
++-++=.+++|++..++.
T Consensus 82 vL~vvAaSmisVtg~~fS 99 (464)
T COG4325 82 VLIVVAASMISVTGIVFS 99 (464)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777888887775543
No 330
>PRK14873 primosome assembly protein PriA; Provisional
Probab=21.36 E-value=69 Score=38.96 Aligned_cols=21 Identities=19% Similarity=0.445 Sum_probs=14.0
Q ss_pred ccccccCCceEEcccccccCCCCc
Q 004646 612 PCAYVCANSRIYNATDWYICQGMR 635 (740)
Q Consensus 612 pC~y~C~GsGv~d~teCa~CqG~G 635 (740)
.|.| |+-.. ....|+.|.+..
T Consensus 412 ~Ch~-CG~~~--~p~~Cp~Cgs~~ 432 (665)
T PRK14873 412 RCRW-CGRAA--PDWRCPRCGSDR 432 (665)
T ss_pred ECCC-CcCCC--cCccCCCCcCCc
Confidence 4884 87542 366799998763
No 331
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=21.26 E-value=5.5e+02 Score=28.25 Aligned_cols=120 Identities=13% Similarity=0.239 Sum_probs=63.1
Q ss_pred HHHHHhHHHHHHHHHHHHH--hcCch-hHHHHhhhhhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhh--hhcchhh
Q 004646 166 RSLRVYVVPTLKAAIELLE--RQSPM-LMTNIYNAHDYVSRKVQQVYPVALNHLGHFAKIMLLLSMLWLDC--TIRGIDS 240 (740)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~w~~~--~~rg~~~ 240 (740)
..+.+.++++++=-+||+= |--|+ +-......-|. =....-..|+|.++-.++.+|.|= .++|+.
T Consensus 5 ~~~~aiiLGiVqGiTEfLPISSTgHlilv~~~l~~~~~---------~~~F~iviqlGailAV~~~f~~~i~~~l~~~~- 74 (270)
T COG1968 5 ELLQAIILGIVEGITEFLPISSTGHLILVGHLLGFSDA---------GKSFEIVIQLGAILAVVVYFWNDLLRLLKGFR- 74 (270)
T ss_pred HHHHHHHHHHHhccccccccCchhHHHHHHHHHCcCCh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-
Confidence 3467788888888889872 33344 11111111111 234556789999999999999873 233311
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhh
Q 004646 241 FMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAF 320 (740)
Q Consensus 241 ~~~~g~~~~~~~~w~~~~~~~~m~~~~~~l~~~~~~~~~~~~~g~~~~~~iv~~~~~~ilw~~~~f~~t~~~~i~g~~~f 320 (740)
++...-.=- | -..+++++..+-++++|..+.- +|-....+-|..+..+|+||..+
T Consensus 75 -l~~~~~~~~---~---------~l~l~ilvatiPa~v~Gl~~~d------------~i~~~l~~~~~va~~lIv~gi~l 129 (270)
T COG1968 75 -LKTDRESRR---F---------RLWLKILVATIPAVVLGLLFKD------------FIKSHLFNPRVVAIALIVGGILL 129 (270)
T ss_pred -cccchhhHH---H---------HHHHHHHHHHHhHHHhhHHHHH------------HHHHHccChHHHHHHHHHHHHHH
Confidence 111111000 1 0123455555666666555433 23333334677777777777443
No 332
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=21.15 E-value=35 Score=36.78 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Q 004646 459 LKREYRKKAMLVHPDKNMGNEKAVEAFKKLQN 490 (740)
Q Consensus 459 IKKAYRkLAlk~HPDKn~~~p~A~e~Fk~I~e 490 (740)
.+++++.+.-.+.+.-.+ +...+..+.|.+
T Consensus 87 ~~~~l~~ll~~l~~~~~~--~~~~~~l~~l~~ 116 (290)
T PF04216_consen 87 WRAALRELLAALAESGLP--EAAAAALEALRA 116 (290)
T ss_dssp THHHHHHHHHT--S-S-S--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCC--HHHHHHHHHHHh
Confidence 344777777777776322 344445555555
No 333
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=20.90 E-value=4.5e+02 Score=27.11 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=20.8
Q ss_pred HHHHHHHHhhhhhhHHHHHhhhhhhhhccchhH
Q 004646 295 SGTILLWLYGSFWTTFFVIFLGGLAFKFTHERL 327 (740)
Q Consensus 295 ~~~~ilw~~~~f~~t~~~~i~g~~~f~l~~~~~ 327 (740)
.|.++||++++--.+. +-|++..+-+|-||-+
T Consensus 119 v~yfli~v~~~vlv~~-F~il~Pv~L~lvHASL 150 (188)
T KOG4050|consen 119 VGYFLISVFGGVLVFA-FAILFPVLLVLVHASL 150 (188)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3567888888876643 3456666666666655
No 334
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=20.77 E-value=9.9e+02 Score=25.09 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=25.7
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhhhccchhHHHHH
Q 004646 277 ALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFI 331 (740)
Q Consensus 277 ~~~~~~~g~~~~~~iv~~~~~~ilw~~~~f~~t~~~~i~g~~~f~l~~~~~~~~~ 331 (740)
-.+...++..+.+.-.+. -++.|+...++..++..+..+.+...++.+....+
T Consensus 95 ~~i~~~~~~~~~~~~~~~--~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (342)
T TIGR00797 95 DPLLSLMGADGEVAELAQ--DYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYI 147 (342)
T ss_pred HHHHHHhCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 333444454443332222 44555555555555555555566666666554433
No 335
>PLN03140 ABC transporter G family member; Provisional
Probab=20.65 E-value=1.2e+03 Score=31.46 Aligned_cols=17 Identities=12% Similarity=0.407 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q 004646 215 HLGHFAKIMLLLSMLWL 231 (740)
Q Consensus 215 ~~~~~~~~~~~~~~~w~ 231 (740)
...++.--+++-+++|.
T Consensus 1217 ~~~~i~~al~~G~~f~~ 1233 (1470)
T PLN03140 1217 FFFTLAAALMVGTIFWK 1233 (1470)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 33444444445556664
No 336
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=20.57 E-value=1.2e+03 Score=25.97 Aligned_cols=63 Identities=19% Similarity=0.115 Sum_probs=36.6
Q ss_pred CcccccCcccCCCCCHHHHHHHHHHHH-------HHhCCCCCCC--cH-HHHHHHHHHHHHHHHhhhhhhhhhh
Q 004646 441 DHYSALGLSRFENVDVSILKREYRKKA-------MLVHPDKNMG--NE-KAVEAFKKLQNAYEVLFDSFKRKAY 504 (740)
Q Consensus 441 d~YeILGV~~~~~As~~eIKKAYRkLA-------lk~HPDKn~~--~p-~A~e~Fk~I~eAYeVLsDp~kR~~Y 504 (740)
++++-||++.. ..|.+|+++-.++++ .+.++|.+.. .+ .-.+.|+++.+||+.|.+.-..-.|
T Consensus 83 pl~~~l~l~~~-~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~~~p~l~~ 155 (318)
T PF12725_consen 83 PLSERLGLETE-EYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAERYPFLSG 155 (318)
T ss_pred CHHHHcCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHhCCccCC
Confidence 34555666553 356667666655543 3344443311 01 2468899999999999865444333
No 337
>PF05216 UNC-50: UNC-50 family; InterPro: IPR007881 This family contains several eukaryotic transmembrane proteins which are related to the Caenorhabditis elegans protein UNC-50 Q10045 from SWISSPROT. A mammalian homologue, UNCL is a novel inner nuclear membrane protein that associates with RNA and is involved in the cell-surface expression of neuronal nicotinic receptors. UNCL plays a broader role because UNCL homologues are present in two yeast and a plant species, none of which express nicotinic receptors and it is also found in tissues that lack nicotinic receptors.
Probab=20.51 E-value=3.3e+02 Score=29.24 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004646 250 FSVIWCSILSVIAMVGMF 267 (740)
Q Consensus 250 ~~~~w~~~~~~~~m~~~~ 267 (740)
|+|+=+.+++++|+++.+
T Consensus 56 FlvL~~~~l~issi~~~l 73 (231)
T PF05216_consen 56 FLVLLSFFLVISSIAWGL 73 (231)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555566666655544
No 338
>PLN03223 Polycystin cation channel protein; Provisional
Probab=20.49 E-value=1e+03 Score=32.07 Aligned_cols=101 Identities=13% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcchhhhhhcchhhH--------HHHHHHHHHHHHHHHHHHHH--------HHHHHH
Q 004646 212 ALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSF--------FSVIWCSILSVIAMVGMFKF--------LMVLVV 275 (740)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~w~~~~~rg~~~~~~~g~~~~--------~~~~w~~~~~~~~m~~~~~~--------l~~~~~ 275 (740)
...|++.+-.++.++.+.=+==.||=...+-.|..+.- |+||++.+|..++|++.+.| -+..-+
T Consensus 1287 ~~q~Y~aL~GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~IIF~IVF~AFAqLG~LLFGt~ve~FSTf~sSL 1366 (1634)
T PLN03223 1287 YFQWYMTLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIFGMVFVGYAFIGHVIFGNASVHFSDMTDSI 1366 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhcCHHHHH
Q ss_pred HHHHHHHhhhhh----------------hHHHHHHHHHHHHHHhhhhhhHHHH
Q 004646 276 AALVAFFIGFAL----------------ALVVVALSGTILLWLYGSFWTTFFV 312 (740)
Q Consensus 276 ~~~~~~~~g~~~----------------~~~iv~~~~~~ilw~~~~f~~t~~~ 312 (740)
.++..+.+|-.. |.++...|-+++.++..++++..+.
T Consensus 1367 ~TLFqMLLGDfdYF~eDLk~l~e~nrVLGPIYFfSFILLV~FILLNMFIAII~ 1419 (1634)
T PLN03223 1367 NSLFENLLGDITYFNEDLKNLTGLQFVVGMIYFYSYNIFVFMILFNFLLAIIC 1419 (1634)
T ss_pred HHHHHHHHcCchHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
No 339
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=20.29 E-value=5.9e+02 Score=27.48 Aligned_cols=18 Identities=33% Similarity=0.707 Sum_probs=13.9
Q ss_pred HHHHHHHHhhhhhhHHHH
Q 004646 295 SGTILLWLYGSFWTTFFV 312 (740)
Q Consensus 295 ~~~~ilw~~~~f~~t~~~ 312 (740)
..+.+.++++.||++.++
T Consensus 101 ~~~~~~~~f~~~W~~~~i 118 (334)
T PF04515_consen 101 YWLIIYHLFSFFWTSQFI 118 (334)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346677888889998877
No 340
>PF06930 DUF1282: Protein of unknown function (DUF1282); InterPro: IPR009698 This entry represents several hypothetical proteins of around 200 residues in length. The function of is unknown although a number of the members are thought to be putative membrane proteins.
Probab=20.20 E-value=8.5e+02 Score=24.07 Aligned_cols=24 Identities=33% Similarity=0.693 Sum_probs=15.8
Q ss_pred HHHHHHhhhheeeeeeeehhhHHHHHhhh
Q 004646 327 LALFITTMYSIYCAWTYVGWLGLLLALNL 355 (740)
Q Consensus 327 ~~~~~~~~y~~yc~~~~~gwlg~~l~~nl 355 (740)
++.++..+|++ ++.|+|+.-.+|+
T Consensus 127 ~~~~~~~~~~~-----~Lly~Gv~~~~~i 150 (170)
T PF06930_consen 127 LVGLIALIYSV-----YLLYLGVPIFMNI 150 (170)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHhCc
Confidence 44445555554 5788888887777
No 341
>TIGR00765 yihY_not_rbn YihY family protein (not ribonuclease BN). Members of this subfamily include the largely uncharacterized BrkB (Bordetella resist killing by serum B) from Bordetella pertussis. Some members have an additional C-terminal domain. Paralogs from E. coli (yhjD) and Mycobactrium tuberculosis (Rv3335c) are part of a smaller, related subfamily that form their own cluster.
Probab=20.16 E-value=4.4e+02 Score=27.79 Aligned_cols=23 Identities=35% Similarity=0.740 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhhhhhh
Q 004646 293 ALSGTILLWLYGSFWTTFFVIFLGGLA 319 (740)
Q Consensus 293 ~~~~~~ilw~~~~f~~t~~~~i~g~~~ 319 (740)
|.+-++++|+|.+ ++++++|...
T Consensus 230 g~vi~lllWly~~----~~i~l~Ga~l 252 (259)
T TIGR00765 230 AVLPFLMLWVYLS----WLVVLLGAEI 252 (259)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHH
Confidence 3344667777654 5566666643
No 342
>COG4709 Predicted membrane protein [Function unknown]
Probab=20.14 E-value=1e+03 Score=25.06 Aligned_cols=20 Identities=10% Similarity=-0.071 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 004646 208 VYPVALNHLGHFAKIMLLLS 227 (740)
Q Consensus 208 ~~p~~~~~~~~~~~~~~~~~ 227 (740)
.++-|.+...++-.|.++..
T Consensus 74 ~~~n~~~aii~~~~L~~~~v 93 (195)
T COG4709 74 TQKNVRRAIIALIGLGLLAV 93 (195)
T ss_pred cccchHHHHHHHHHHHHHHH
Confidence 45566666666655555443
No 343
>COG3846 TrbL Type IV secretory pathway, TrbL components [Intracellular trafficking and secretion]
Probab=20.08 E-value=8.1e+02 Score=28.88 Aligned_cols=21 Identities=29% Similarity=0.107 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 004646 211 VALNHLGHFAKIMLLLSMLWL 231 (740)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~w~ 231 (740)
+|.-|+..+...+||.+..|+
T Consensus 185 ~v~~~L~tL~~~ill~~~l~~ 205 (452)
T COG3846 185 LVEFWLTTLAGFILLGFGLSL 205 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555443
No 344
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=20.02 E-value=1.4e+03 Score=26.39 Aligned_cols=13 Identities=15% Similarity=0.041 Sum_probs=6.8
Q ss_pred CCHHHHHHHHHHH
Q 004646 454 VDVSILKREYRKK 466 (740)
Q Consensus 454 As~~eIKKAYRkL 466 (740)
.+.+|+|.-+..+
T Consensus 290 l~~~Dl~~i~~~l 302 (459)
T PF10337_consen 290 LSPDDLKPIFSLL 302 (459)
T ss_pred CCHHHHHHHHHHH
Confidence 4455555555443
Done!