Query 004647
Match_columns 740
No_of_seqs 227 out of 534
Neff 5.7
Searched_HMMs 29240
Date Tue Mar 26 18:56:16 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004647.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1943-1947//hhsearch_pdb/004647hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fqd_A Protein DHP1, 5'-3' exo 1.0 1 1 1853.5 63.3 709 1-727 4-873 (899)
2 3pie_A 5'->3' exoribonuclease 1.0 1 1 1589.4 56.9 565 1-626 1-664 (1155)
3 2y35_A LD22664P; hydrolase-DNA 1.0 1 1 1491.1 47.7 562 1-626 1-586 (1140)
4 1b43_A Protein (FEN-1); nuclea 1.0 1 1 82.0 8.6 227 51-368 23-257 (340)
5 1a76_A Flap endonuclease-1 pro 1.0 1 1 73.5 10.4 199 50-356 22-235 (326)
6 1rxw_A Flap structure-specific 1.0 1 1 70.0 16.9 220 51-368 23-255 (336)
7 3ory_A Flap endonuclease 1; hy 1.0 1 1 65.4 11.9 224 51-370 37-273 (363)
8 3qe9_Y Exonuclease 1; exonucle 1.0 1 1 62.1 17.0 172 1-241 1-178 (352)
9 1ul1_X Flap endonuclease-1; pr 1.0 1 1 59.6 12.7 230 2-356 1-242 (379)
10 2izo_A FEN1, flap structure-sp 1.0 1 1 55.4 13.6 222 51-368 20-254 (346)
No 1
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=1853.45 Aligned_cols=709 Identities=45% Similarity=0.778 Sum_probs=638.2
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 96114889999537986312445798558999644778889999986568078621343233215789999999999999
Q 004647 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFK 80 (740)
Q Consensus 1 MGVP~ffrWL~~rYP~i~~~~~e~~~~~~~~g~~~p~d~s~pn~n~~~~DnLYlDmNgIIH~c~h~~~~~~p~te~e~~~ 80 (740)
||||+|||||++|||+|+++|+|+.|..+.+|..+|+|.++|||||.+|||||||||||||+|+|+++.+.+.||++||.
T Consensus 4 MGVP~ffRWLs~rYP~i~~~~~e~~~~~~~~g~~~p~d~~~pnpng~e~DnLYlDmNgIIH~c~h~~~~~~~~te~e~~~ 83 (899)
T 3fqd_A 4 MGVPALFRLLSRKFAKVITPVIEAPTEKLPDGTEIEPDLSLPNPNGVECDNLYLDMNGIVHPCSHPEDRPAPETEDEMMV 83 (899)
T ss_dssp CCHHHHHHHHHHHCGGGEEECCCCCCEECTTSCEECCCTTSCCTTSSCEEEEEEETHHHHHHHHSCSSSCCCCSHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf 65479999999777763322014565304577626632247898875221478813102244217778888889999999
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCC
Q ss_conf 999999998733054306887642888414557988744435998999999999999999980765687-8888878876
Q 004647 81 SIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRRFRAAKDAAEAEAEEERLRKEFEEAGKLLSA-KEKPETCDSN 159 (740)
Q Consensus 81 ~If~yid~lv~~VrPrkllyiAiDGVAPrAKmnQQRsRRfrsa~e~~~~~~~~~~~~~~~~~eg~~~~~-~~~~~~fDsN 159 (740)
+||.|||+||++|||||+||||||||||||||||||+||||+|++++++.++.+++++++..+|...+. ......||||
T Consensus 84 ~If~yid~l~~~vrPrklly~AiDGVAPrAKmnQQRsRRfrsa~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fDsN 163 (899)
T 3fqd_A 84 AVFEYTDRILAMVRPRQLLFIAIDGVAPRAKMNQQRSRRFRSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWDSN 163 (899)
T ss_dssp HHHHHHHHHHHHHCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCHHHHSCCCCCGG
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 99999999997717331588850487871278999998887655456667789999999996699785322345677757
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHH
Q ss_conf 30256289999999999999999811999864089991999999714689999998531999999972899906803899
Q 004647 160 VITPGTQFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIM 239 (740)
Q Consensus 160 ~ITPGT~FM~~L~~~L~~yi~~kl~~dp~w~~l~VI~Sds~vPGEGEHKIm~fIR~qr~~p~ydpn~~H~IyG~DADLIm 239 (740)
||||||+||.+|+.+|+|||+.|+++||+|++++||+||++||||||||||+|||+||++|+|||||+|||||+||||||
T Consensus 164 ~ITPGT~FM~~L~~~L~~~i~~kl~~dp~W~~~~VIlSd~~vPGEGEHKIm~fIR~~r~~p~ydpN~~HcIyGlDADLIm 243 (899)
T 3fqd_A 164 CITPGTPFMDTLAKSLRYYIINKLNSDPCWRNVRFILSDASVPGEGEHKIMEFIRSQRVKPEYDPNTHHVVYGLDADLIM 243 (899)
T ss_dssp GSSTTSHHHHHHHHHHHHHHHHHHTSCGGGTTCEEEEECTTSCSCHHHHHHHHHHHHHTSTTSCTTCCEEEECCCTTHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHH
T ss_conf 51886299999999999999998526845245369980898899507999999999722788899981899756710767
Q ss_pred HHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHC
Q ss_conf 77203772079964011478887543224556752000169999999998998887656665189745999999986608
Q 004647 240 LSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPIHKKKYQFLNIWVLREYLQYELD 319 (740)
Q Consensus 240 L~Lathe~~f~ILRe~v~~~~~~~~c~~c~~~~h~~~~c~~~~~~~~~~~~~~~~~~~~~~~f~~l~i~iLREyL~~e~~ 319 (740)
|||+||||||+||||+|++.. +|.||.+.+|+++......+. . ......++|+|+||++|||||..||.
T Consensus 244 L~LatHep~f~ILRE~v~~~~--------~q~~~~~~~~~~~~k~~~~~~--~-~~~~~~~~f~~l~i~iLREYL~~E~~ 312 (899)
T 3fqd_A 244 LGLATHEPHFRVLREDVFFQQ--------GSTKKTKEERLGIKRLDDVSE--T-NKVPVKKPFIWLNVSILREYLEVELY 312 (899)
T ss_dssp HHHHTTCSSEEEEEECCC-----------------CTTTTTCCBTTC-------------CCEEEEEHHHHHHHHHHHHC
T ss_pred HHHHCCCCCEEEEEEECCCCC--------CCCCCCHHHHCCCCCCCCCCC--C-CCCCCCCCEEEEEHHHHHHHHHHHHC
T ss_conf 755406773699863112476--------756650433124334454322--2-35555686289768999999999844
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECHHHHHHHHHHHHH
Q ss_conf 99999987313568789987633058777999964335005999999999985214994233883326999999999998
Q 004647 320 IPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAV 399 (740)
Q Consensus 320 ~~~~~~~~d~eriIDDfVfLcfl~GNDFLPhlPsl~I~egaid~L~~~Yk~~l~~~~gYLt~~g~inl~~l~~fl~~l~~ 399 (740)
+++++|++|+||+||||||||||||||||||||+|+|++|||+.|+.+||+.++++|||||++|+||++||+.||+.|+.
T Consensus 313 ~~~~~f~~d~ERiIDDfVfmcFfvGNDFLPhlP~l~I~egaid~L~~~Yk~~l~~~~gYlt~~G~inl~rl~~~l~~L~~ 392 (899)
T 3fqd_A 313 VPNLPFPFDLERAIDDWVFFIFFVGNDFLPHLPSLDIRDGAVERLTEIWRASLPHMGGYLTLDGSVNLARAEVILSAVGN 392 (899)
T ss_dssp CTTCSSCCCHHHHHHHHHHHGGGGCCSSSCCCTTCCGGGTHHHHHHHHHHHHHHHHSSCSEETTEECHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCEECHHHHHHHHHHHHH
T ss_conf 66888872155534444555675376547999856757784999999999998873885503999859999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-------H----H------------------------------HH---HH-----------
Q ss_conf 6999999999999999988-------9----9------------------------------87---76-----------
Q 004647 400 YEDQIFQKRTRIQQAYEYN-------E----A------------------------------MK---LN----------- 424 (740)
Q Consensus 400 ~E~~if~~r~~~~~~~~~~-------~----~------------------------------~~---~~----------- 424 (740)
.|++||++|.+.+++...+ . . .+ ..
T Consensus 393 ~E~~iF~~r~~~e~~~~~~~krr~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (899)
T 3fqd_A 393 QEDDIFKRLKQQEDRRNENYRRRQQRESNQESESYVDNVVIQRSVETQSTEVVTSSKSTSVDTKPPKKTQKIDAPAPVDL 472 (899)
T ss_dssp THHHHHHHHHHHHTTTC---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999999999878777766665431023322222234553211223322123321000235555567544554
Q ss_pred ---------------------HHC----C-C-----------H-HHHH--------------------------------
Q ss_conf ---------------------420----2-3-----------0-4431--------------------------------
Q 004647 425 ---------------------ARR----E-S-----------S-EELL-------------------------------- 434 (740)
Q Consensus 425 ---------------------~r~----~-~-----------~-~~~~-------------------------------- 434 (740)
+|. . + + +..+
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~n~~~a~~lk~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 552 (899)
T 3fqd_A 473 VNLSEKTSNRSLGATNRELINNRAANRLGLSREAAAVSSVNKLAASALKAQLVSNETLQNVPLEDSIASSSAYEDTDSIE 552 (899)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 45432112221012213454211033310234332201245358899998741135434454331000111000122211
Q ss_pred ----------------------CC---CCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----------------------18---50000123469953477688874099993567799999999999879999552
Q 004647 435 ----------------------QA---PVAVADTVKLGEPGYKERYYADKFEISNPEEIDKVKKDVVLKYVEGLCWVCRY 489 (740)
Q Consensus 435 ----------------------~~---~~~~~d~i~l~e~~~k~rYY~~Kf~~~~~~~~~~~~~~v~~~YieGL~Wvl~Y 489 (740)
.. ..+..|.+++|++|||+|||++||+++..+ +++++++|++|+|||||||+|
T Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~l~e~g~K~rYY~~KF~~~~~d--~e~~~~v~~~YvEGL~WVL~Y 630 (899)
T 3fqd_A 553 SSTPVVHPIDTKVSNVGQKRKAPDSTEENENTDTVRLYEPGYRERYYEQKFHISPDE--PEKIREAVKHYVHGLCWVLLY 630 (899)
T ss_dssp --------------------------------CCSCTTSTTHHHHHHHHTSCCCTTC--THHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCC--HHHHHHHHHHHHHHHHHHHHH
T ss_conf 124311221011011233455555433245024466436526788899855998898--999999999988888889987
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 11576655445688988530001002674223248999994888652279888899706643001799996632488862
Q 004647 490 YYQDVCSWQWFYPYHYAPFASDLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPIYKFYPPDF 569 (740)
Q Consensus 490 Yy~G~~SW~WyYPyHYAPfasDl~~l~~~~i~F~~g~P~~P~eQLl~VLP~~S~~~LP~~~~~Lm~d~~Spi~dfYP~~f 569 (740)
||+|||||+||||||||||||||+++.+++++|++|+||+|||||||||||+|+++||++||.||++|+|||+||||++|
T Consensus 631 YYqGc~SW~WyYPYHYAPfaSD~~~~~~~~i~Fe~G~PF~PfEQLMaVLPaaS~~~LP~~y~~LMtdp~SpIiDFYP~dF 710 (899)
T 3fqd_A 631 YYQGCPSWTWYYPYHYAPFAADFKDLASIDVKFELNQPFKPYEQLLGVLPAASKNNLPEKLQTLMTDENSEIIDFYPENF 710 (899)
T ss_dssp HHTCCSCSSCCCCCSSCCCGGGCCSCTTCCCCCCCCCCCCHHHHHHHHCCGGGGGGSCHHHHHHHHCTTCTTGGGCCSCC
T ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHCCCCCEECCCCCCCCHHHHHHHHCCHHHHCCCCHHHHHHHCCCCCCCHHHCCCCC
T ss_conf 70898787666746556268888606467400478998985998886367756371619899873699971065495430
Q ss_pred CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCEEEECCCCCCHHHHH-HHHHHCCCCCCCCCC
Q ss_conf 1147897220212211467796899999865206999989840358995799729996478999-995311799999976
Q 004647 570 QIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLLYVHPQHPLYQQIT-LYCQLYHQLPPQDRF 648 (740)
Q Consensus 570 ~iD~nGk~~~WqgV~lLPFIDe~~Ll~a~~~~~~~Lt~eE~~RN~~g~~~lf~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 648 (740)
+||||||+++||||||||||||+||++|++++++.||+||++||++|.+++|++++|++++.+. .+|.+.. ...
T Consensus 711 eiDmNGKk~~WqgVvlLPFIDE~RLL~A~~~~~~~LT~eEk~RN~~G~~~lf~~~~~~l~~~~~~~~y~~~~-----~~~ 785 (899)
T 3fqd_A 711 TIDLNGKKFEWQGVALLPFIDENRLLNAVSKIYPQLTEEESKRNEDGSTLLFISEHHPMFSELVKQLYSKKR-----QGK 785 (899)
T ss_dssp CEECSSSSCTTSSEECCCCCCHHHHHHHHHTTGGGSCHHHHHTTSCCCCEEEEETTSTTHHHHHHHHTSSSC-----SSS
T ss_pred CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCC-----CCC
T ss_conf 236889835501378668568899999999865529999997546798679986898408899998503556-----675
Q ss_pred CEECCCCCCCCCCCCEECCCCCCCCCCCCCCCC--CCCC------CCCCCEEEEEECCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 400257767997641111357799953488899--9999------889818999940999-9999988999997895665
Q 004647 649 AWEIDVNASGGMNGYIWLCERNGLRSIIPSPVK--GLPD------IERNQAINVTYLNPQ-KHRHIPEPPKGATIPAKVC 719 (740)
Q Consensus 649 ~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~p~~--~~~~------i~~~~~~~~~y~~p~-~~~~~~~~l~g~~~p~~~l 719 (740)
.+++|++.++||+|+|+.++.+.+++.+.||+. +|+| |.+|+++|+.|++|+ .+.|+|++|+||++|+|+|
T Consensus 786 ~~~~~~~~s~gl~G~v~~~~~~~p~~~~~sP~~~~~~~~~~~~~~i~~n~~~~~~y~~P~~~~~~~s~lL~g~~~p~~~l 865 (899)
T 3fqd_A 786 PLKLSGKMAHGLFGKVNTNDSVIPNVSVQCPIDVTSADALQKYGSIDDNQSISLVFEVPKSHFVHKSMLLRGVKMPNRVL 865 (899)
T ss_dssp CEECCGGGGTTCCSEEEECTTSCSCCCBCCSSCCCSHHHHHHSCCBSSCCEEEEEEECCCCSSCCCCSCCTTCCCCCCCC
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 30448000357631788477758888551898746799854566415881799998688878886774799988898979
Q ss_pred CCCCHHHH
Q ss_conf 64212587
Q 004647 720 EQCIFIYI 727 (740)
Q Consensus 720 ~~~~~~~~ 727 (740)
+..|+--+
T Consensus 866 ~~~D~~~~ 873 (899)
T 3fqd_A 866 TPEDINQV 873 (899)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
T ss_conf 98898999
No 2
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=1.00 E-value=1 Score=1589.42 Aligned_cols=565 Identities=41% Similarity=0.770 Sum_probs=489.5
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC--CCCCHHHH
Q ss_conf 9611488999953798631244579855899964477888999998656807862134323321578999--99999999
Q 004647 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKP--APTSYDDV 78 (740)
Q Consensus 1 MGVP~ffrWL~~rYP~i~~~~~e~~~~~~~~g~~~p~d~s~pn~n~~~~DnLYlDmNgIIH~c~h~~~~~--~p~te~e~ 78 (740)
||||+|||||++|||+|+..+ + +..+ .+|||||||||||||+|+|+++.+ .+.||++|
T Consensus 1 MGVP~ffrwl~~ryP~i~~~~-~--------~~~~-----------pe~DnLYlDmNgIIH~c~h~~~~~~~~~~te~e~ 60 (1155)
T 3pie_A 1 MGIPKFFHFISERWPQISQLI-D--------GSQI-----------PEFDNLYLDMNSILHNCTHGDGSEVNSRLSEEEV 60 (1155)
T ss_pred CCHHHHHHHHHHHCCCHHHCC-C--------CCCC-----------CCCCEEEEECCCCEEEEECCCCCCCCCCCCHHHH
T ss_conf 975799999987685343104-6--------7878-----------7577689965521123016888865568899999
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999998733054306887642888414557988744435998999999999999999980765687888887887
Q 004647 79 FKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRRFRAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPETCDS 158 (740)
Q Consensus 79 ~~~If~yid~lv~~VrPrkllyiAiDGVAPrAKmnQQRsRRfrsa~e~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~fDs 158 (740)
|.+||+|||+||++|||||+||||||||||||||||||+||||+|+++..+.. ....+|..++ +...|||
T Consensus 61 ~~~if~yid~l~~~vrPrkllyiAiDGVAPrAKmnqQR~RRfrsa~~~~~~~~-------~~~~~g~~~~---~~~~fds 130 (1155)
T 3pie_A 61 YSKIFSYIDHLFHTIKPKQTFYMAIDGVAPRAKMNQQRARRFRTAMDAEKALQ-------KAIENGDELP---KGEPFDS 130 (1155)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHCCCCCC---CCCCCCC
T ss_conf 99999999999976474248999824888706788989888776533157799-------9986187677---5556664
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHH
Q ss_conf 63025628999999999999999981199986408999199999971468999999853199999997289990680389
Q 004647 159 NVITPGTQFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLI 238 (740)
Q Consensus 159 N~ITPGT~FM~~L~~~L~~yi~~kl~~dp~w~~l~VI~Sds~vPGEGEHKIm~fIR~qr~~p~ydpn~~H~IyG~DADLI 238 (740)
|||||||+||.+|+.+|++||+.|+++||+|++++||+||++||||||||||+|||++|++|+||||++|||||+|||||
T Consensus 131 n~ITPGT~FM~~L~~~L~~~i~~k~~~d~~w~~~~vi~S~~~vPGEGEhKIm~~IR~~r~~p~y~pn~~H~IyG~DADLI 210 (1155)
T 3pie_A 131 NAITPGTEFMAKLTENLKYFIHDKITNDTRWQNVKVIFSGHEVPGEGQHKIMDYIRAIRAQEDYNPNTRHCIYGLDADLI 210 (1155)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHH
T ss_conf 61168848999999999999999710786746548999699989961899999999850279989998089964376388
Q ss_pred HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHH
Q ss_conf 97720377207996401147888754322455675200016999999999899888765666518974599999998660
Q 004647 239 MLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPIHKKKYQFLNIWVLREYLQYEL 318 (740)
Q Consensus 239 mL~Lathe~~f~ILRe~v~~~~~~~~c~~c~~~~h~~~~c~~~~~~~~~~~~~~~~~~~~~~~f~~l~i~iLREyL~~e~ 318 (740)
||||+||||||+||||++.+..+..+ + .....++|+|+||++|||||+.||
T Consensus 211 mL~L~thep~f~iLRe~v~f~~~~~~----------------~-------------~~~~~~~f~~l~i~~LREyL~~ef 261 (1155)
T 3pie_A 211 ILGLSTHDHHFCLLREEVTFGKRSSS----------------V-------------KTLETQNFFLLHLSILREYLALEF 261 (1155)
T ss_pred HHHHCCCCCCEEEEEECCCCCCCCCC----------------C-------------CCCCCCCEEEEEHHHHHHHHHHHH
T ss_conf 76640588747998500014766556----------------6-------------664558709998899999999999
Q ss_pred CC--CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECHHHHHHHHHH
Q ss_conf 89--9999987313568789987633058777999964335005999999999985214994233883326999999999
Q 004647 319 DI--PNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQS 396 (740)
Q Consensus 319 ~~--~~~~~~~d~eriIDDfVfLcfl~GNDFLPhlPsl~I~egaid~L~~~Yk~~l~~~~gYLt~~g~inl~~l~~fl~~ 396 (740)
.. +..+|++|+||+||||||||||+|||||||||+|+|++|||+.|+.+|++.++++|||||++|+||++||+.||+.
T Consensus 262 ~~~~~~~~~~~d~ERiiDDfVflcf~vGNDFLPhlP~l~I~~g~i~~L~~~Yk~~l~~~~gYlt~~G~inl~rl~~~l~~ 341 (1155)
T 3pie_A 262 EEITDSVQFEYDFERVLDDFIFVLFTIGNDFLPNLPDLHLKKGAFPVLLQTFKEALQHMDGYINEQGKINLARFSIWLKY 341 (1155)
T ss_pred HHHCCCCCCCCCHHHHHCCEEEEHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEECCCCEECHHHHHHHHHH
T ss_conf 86341568876576742462454064186258999856858881999999999988763883504989839999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHH--------HHCC---------------C-H-----H-H---HHC
Q ss_conf 9986999999999999999988--------998776--------4202---------------3-0-----4-4---311
Q 004647 397 VAVYEDQIFQKRTRIQQAYEYN--------EAMKLN--------ARRE---------------S-S-----E-E---LLQ 435 (740)
Q Consensus 397 l~~~E~~if~~r~~~~~~~~~~--------~~~~~~--------~r~~---------------~-~-----~-~---~~~ 435 (740)
|+++|+++|++|...++.+..+ +..+.+ .+++ . . + . .+.
T Consensus 342 L~~~E~~~F~~~~~d~~~~~~k~~~~~~~~~~~r~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 421 (1155)
T 3pie_A 342 LSDFEYLNFEKKDIDVEWFNQQLENISLEGERKRTRMGKKLLMKQQKKLIGAVKPWLLKTVQRKVTSELQDADFEIFPLE 421 (1155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999888765789887766532346677765413321115677665112202201334455555542224444567
Q ss_pred -------------------------C----------------C--CC-----------CCCCCCCCCCCHHHHHHHHHHC
Q ss_conf -------------------------8----------------5--00-----------0012346995347768887409
Q 004647 436 -------------------------A----------------P--VA-----------VADTVKLGEPGYKERYYADKFE 461 (740)
Q Consensus 436 -------------------------~----------------~--~~-----------~~d~i~l~e~~~k~rYY~~Kf~ 461 (740)
+ + ++ ..+..+.+.++||+|||++||+
T Consensus 422 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~k~rYY~~Kf~ 501 (1155)
T 3pie_A 422 DKELVRANLDFLKEFAFDLGLILAHSKSKDLYYFKLDLDSINXXXXXXXXXXXXXXXXXXXIYSERFVEWKDQYYKDKLD 501 (1155)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 30234554899999987521122344555432100145555432111111111111110000000002478999998629
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 99935677999999999998799995521157665544568898853000100267422324899999488865227988
Q 004647 462 ISNPEEIDKVKKDVVLKYVEGLCWVCRYYYQDVCSWQWFYPYHYAPFASDLKDLSDLEITFFLGEPFRPFDQLMGTLPAA 541 (740)
Q Consensus 462 ~~~~~~~~~~~~~v~~~YieGL~Wvl~YYy~G~~SW~WyYPyHYAPfasDl~~l~~~~i~F~~g~P~~P~eQLl~VLP~~ 541 (740)
++.. + .+.++++|++|+|||||||+|||+|||||+||||||||||||||+++.+++++|++|+||+|||||||||||+
T Consensus 502 ~~~~-~-~e~~~~v~~~YveGL~WVL~YYy~Gc~SW~WyYPYHYAPfasDl~~~~~~~i~F~~g~Pf~PfeQLm~VLP~~ 579 (1155)
T 3pie_A 502 FSIN-D-TDSLKEMTENYVGGLQWVLYYYYRGCPSWSWYYRYHYAPRISDVIKGIDQNIEFHKGQPFKPFQQLMAVLPER 579 (1155)
T ss_pred CCCC-C-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCCCHHHHHHHCCHH
T ss_conf 9868-8-9999999999888887689877189878665575556637889975415660553799998489985106865
Q ss_pred CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCEEE
Q ss_conf 88997066430017999966324888621147897220212211467796899999865206999989840358995799
Q 004647 542 SSSALPEKYRNLMTDPSSPIYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLLY 621 (740)
Q Consensus 542 S~~~LP~~~~~Lm~d~~Spi~dfYP~~f~iD~nGk~~~WqgV~lLPFIDe~~Ll~a~~~~~~~Lt~eE~~RN~~g~~~lf 621 (740)
|+++||++||+||+||+|||+||||++|+||||||+++||||||||||||+||++|++++++.||++|++||++|.+++|
T Consensus 580 S~~~LP~~~~~LM~d~~SpIidFYP~dF~iD~NGKk~~WqgVvlLPFIDe~rLl~a~~~~~~~Lt~eE~~RN~~g~~~lf 659 (1155)
T 3pie_A 580 SKNLIPVVYRPLMYDEHSPILDFYPNEVELDLNGKTADWEAVVKISFVDQKRLVEAMAPYDAKLSPDEKKRNSFGTDLIF 659 (1155)
T ss_pred HHCCCCHHHHHHHCCCCCCHHHHCCCCEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCEEE
T ss_conf 64618686897634999825663953325658898044456897773798999999863136699999963567986799
Q ss_pred ECCCC
Q ss_conf 72999
Q 004647 622 VHPQH 626 (740)
Q Consensus 622 ~~~~~ 626 (740)
+++..
T Consensus 660 ~~~~~ 664 (1155)
T 3pie_A 660 IFNPQ 664 (1155)
T ss_pred EECCC
T ss_conf 95588
No 3
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=1491.10 Aligned_cols=562 Identities=42% Similarity=0.792 Sum_probs=482.7
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC--CCCHHHH
Q ss_conf 96114889999537986312445798558999644778889999986568078621343233215789999--9999999
Q 004647 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPA--PTSYDDV 78 (740)
Q Consensus 1 MGVP~ffrWL~~rYP~i~~~~~e~~~~~~~~g~~~p~d~s~pn~n~~~~DnLYlDmNgIIH~c~h~~~~~~--p~te~e~ 78 (740)
||||+|||||++|||++...+.+. + ..+|||||||||||||+|+|+++.+. +.+|++|
T Consensus 1 MGVp~ffrwl~~ryP~~~~~~~~~---------------~-----~~e~DnLYlDmNgIIH~c~h~~~~~~~~~~~e~e~ 60 (1140)
T 2y35_A 1 MGVPKFFRYISERYPCLSELAREH---------------C-----IPEFDNLYLDMNGIVHNCSHPDDNNIHFHLEEEQI 60 (1140)
T ss_dssp CCSCHHHHHHHHHSGGGEEEEETT---------------T-----SCCCSEEEEEHHHHHHHHHCC------CCCCHHHH
T ss_pred CCHHHHHHHHHHHCCCHHHHCCCC---------------C-----CCCCCEEEEECCHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf 982689999998787453200004---------------7-----88677689952201113217878887777799999
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999998733054306887642888414557988744435998999999999999999980765687888887887
Q 004647 79 FKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRRFRAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPETCDS 158 (740)
Q Consensus 79 ~~~If~yid~lv~~VrPrkllyiAiDGVAPrAKmnQQRsRRfrsa~e~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~fDs 158 (740)
|++||+|||+||++|||||+||||||||||||||||||+||||+|++++..+.+ ..++|.. .....|||
T Consensus 61 ~~~if~yid~l~~~vrPrkll~iAiDGvAPrAKmnqQR~RRfrsa~~~~~~~~~-------~~~~g~~----~~~~~fds 129 (1140)
T 2y35_A 61 FQEIFNYVDKLFYLIKPQRLFFLSVDGVAPRAKMNQQRSRRFRTAREAEQQEAK-------AAQRGEL----REHERFDS 129 (1140)
T ss_dssp HHHHHHHHHHHHHHHCCSSEEEEECCCSCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHC-----------CCCS
T ss_pred HHHHHHHHHHHHHEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHCCCC----CCCCCCCC
T ss_conf 999999999998601665048998348786257899998776531012456778-------7650776----55566774
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHH
Q ss_conf 63025628999999999999999981199986408999199999971468999999853199999997289990680389
Q 004647 159 NVITPGTQFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLI 238 (740)
Q Consensus 159 N~ITPGT~FM~~L~~~L~~yi~~kl~~dp~w~~l~VI~Sds~vPGEGEHKIm~fIR~qr~~p~ydpn~~H~IyG~DADLI 238 (740)
|||||||+||.+|+.+|++||+.|+++||.|++++||+||++||||||||||+|||+||++|+||||++|||||+|||||
T Consensus 130 n~ITPGT~FM~~l~~~L~~~i~~k~~~d~~w~~~~Vi~S~~~vPGEGEhKIm~~IR~~~~~p~~~pn~~HciyG~DADLI 209 (1140)
T 2y35_A 130 NCITPGTEFMVRLQEGLRAFLKTKISTDPLWQRCTVILSGQEAPGEGEHKIMDYIRYMKTQPDYDPNTRHCLYGLDAALI 209 (1140)
T ss_dssp GGGSTTSHHHHHHHHHHHHHHHHHHHHCGGGSSSEEEEECSSSCSCHHHHHHHHHHHHHHSTTCCTTCCEEEECCSHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHH
T ss_conf 62189808999999999999999851685646608999698989852899999999986478989997089983677399
Q ss_pred HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHH
Q ss_conf 97720377207996401147888754322455675200016999999999899888765666518974599999998660
Q 004647 239 MLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPIHKKKYQFLNIWVLREYLQYEL 318 (740)
Q Consensus 239 mL~Lathe~~f~ILRe~v~~~~~~~~c~~c~~~~h~~~~c~~~~~~~~~~~~~~~~~~~~~~~f~~l~i~iLREyL~~e~ 318 (740)
||||+|||+||+||||++.++...+ ......+.|+++||++|||||+.||
T Consensus 210 mL~L~the~~f~ilRe~v~f~~~~~------------------------------~~~~~~~~f~~l~i~~lReyL~~ef 259 (1140)
T 2y35_A 210 ILGLCTHELHFVVLREEVKFGRNVK------------------------------RTSVEETRFFLLHLGLLREYLELEF 259 (1140)
T ss_dssp HHHHHTTCSSEEEEEESSCTTCCTT------------------------------CCCGGGCEEEEEEHHHHHHHHHHHG
T ss_pred HHHHCCCCCCEEEEECCCCCCCCCC------------------------------CCCCCCCCEEEEEEHHHHHHHHHHH
T ss_conf 9997068875899613112465445------------------------------5664446438997368999999986
Q ss_pred CC-CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECHHHHHHHHHHH
Q ss_conf 89-99999873135687899876330587779999643350059999999999852149942338833269999999999
Q 004647 319 DI-PNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSV 397 (740)
Q Consensus 319 ~~-~~~~~~~d~eriIDDfVfLcfl~GNDFLPhlPsl~I~egaid~L~~~Yk~~l~~~~gYLt~~g~inl~~l~~fl~~l 397 (740)
.. ...++++|+||+||||||||||+|||||||+|+++|++||++.|+++|++.+++++||||++|+||+++|+.||..|
T Consensus 260 ~~~~~~~~~~d~eriidDfVfl~fl~GNDFLP~lp~l~I~~gai~~L~~~Y~~~~~~~~gyl~~~g~in~~~l~~~l~~l 339 (1140)
T 2y35_A 260 DALRTDEHKLDIAQLIDDWVLMGFLVGNDFIPHLPCLHISSNALPLLYRTYIGIYPTLGGNINENGKLNLRRLQIFISAL 339 (1140)
T ss_dssp GGGCCSSSCCCHHHHHHHHHHHHHHHCCTTSCCCTTCCTTTTHHHHHHHHHHHHGGGSSSCSEETTEECHHHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECHHHHHHHHHHH
T ss_conf 54126655544888777799999973876579987536577779999999999888728922479888599999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHH--HCCCHH---H--HH-CCC--CCCCC--CCCCC-CCCHHHHHH
Q ss_conf 98699999999999999998899--------87764--202304---4--31-185--00001--23469-953477688
Q 004647 398 AVYEDQIFQKRTRIQQAYEYNEA--------MKLNA--RRESSE---E--LL-QAP--VAVAD--TVKLG-EPGYKERYY 456 (740)
Q Consensus 398 ~~~E~~if~~r~~~~~~~~~~~~--------~~~~~--r~~~~~---~--~~-~~~--~~~~d--~i~l~-e~~~k~rYY 456 (740)
++.|.++|+++....+....+.+ ..... .....+ . .+ ... .+..| ....+ .++||++||
T Consensus 340 ~~~E~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~k~~YY 419 (1140)
T 2y35_A 340 TEVELDHFKEHADDLKYMNNKSEAFDMDVGEITESQNLDSDLGALINKSMLLYDDDSEEDCSDENAVLLKEFQNYKRNFY 419 (1140)
T ss_dssp HHHHHHHHHHHSCC------------------------------------------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998888888642101003312220232210367899887554203456543332266665433317999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 87409999356779999999999987999955211576655445688988530001002674223248999994888652
Q 004647 457 ADKFEISNPEEIDKVKKDVVLKYVEGLCWVCRYYYQDVCSWQWFYPYHYAPFASDLKDLSDLEITFFLGEPFRPFDQLMG 536 (740)
Q Consensus 457 ~~Kf~~~~~~~~~~~~~~v~~~YieGL~Wvl~YYy~G~~SW~WyYPyHYAPfasDl~~l~~~~i~F~~g~P~~P~eQLl~ 536 (740)
++||+.+.. +++++++|++|+|||||||+|||+|||||+||||||||||||||.++.+++++|++|+||+||+|||+
T Consensus 420 ~~Kf~~~~~---~~~~~~~~~~YveGl~Wvl~YYy~G~~SW~WyYpyhYAP~~sDl~~~~~~~i~F~~g~Pf~PfeQLm~ 496 (1140)
T 2y35_A 420 RNKFKRDPN---DELIEELCHHYVNALQWVLDYYYRGVQSWDWYYPFHYTPFISDLKNIEQVEIAFHMGTPFLPFQQLLA 496 (1140)
T ss_dssp HHHHCSCCC---HHHHHHHHHHHHHHHHHHHHHHHTSCSCSSCCCCCSSCCCGGGCCCCTTCCCCCCCCCCCCHHHHHHH
T ss_pred HHHHCCCCC---HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 997089876---89999999999999999999745898898762677768527888742135431038999985998875
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCC
Q ss_conf 27988889970664300179999663248886211478972202122114677968999998652069999898403589
Q 004647 537 TLPAASSSALPEKYRNLMTDPSSPIYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVM 616 (740)
Q Consensus 537 VLP~~S~~~LP~~~~~Lm~d~~Spi~dfYP~~f~iD~nGk~~~WqgV~lLPFIDe~~Ll~a~~~~~~~Lt~eE~~RN~~g 616 (740)
||||+|+++||++|++||++|+|||+||||++|+||||||+++|||||||||||++||++|++++++.||+||++||++|
T Consensus 497 VLP~~S~~~LP~~~~~Lm~~~~Spi~dfYP~~f~iD~nGk~~~we~VvllPFIde~~Ll~a~~~~~~~Lt~eE~~RN~~g 576 (1140)
T 2y35_A 497 VLPAASAKLLPVAYHDLMLLPTSPLAEFYPLEFESDLNGKKHDWEAVVLIPFIDEGRLLAAMLPCEAQLSLEERERNRHG 576 (1140)
T ss_dssp HCCGGGGGGSCGGGHHHHHCTTCTTGGGSCSSCCCCCSSCCSGGGSCCCCCCCCHHHHHHTTHHHHHHSCHHHHHTTSCC
T ss_pred HCCHHHHHHCCHHHHHHHCCCCCCHHHHCCCCEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHCCCC
T ss_conf 34855443377989974249997246749433566578984767768978737889999998750056999999642568
Q ss_pred CCEEEECCCC
Q ss_conf 9579972999
Q 004647 617 LDLLYVHPQH 626 (740)
Q Consensus 617 ~~~lf~~~~~ 626 (740)
.+++|..+..
T Consensus 577 ~~~~~~~~~~ 586 (1140)
T 2y35_A 577 PMYVYKYSTV 586 (1140)
T ss_dssp CEEEEEECSS
T ss_pred CCEEEEECCC
T ss_conf 7338973665
No 4
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=1.00 E-value=1 Score=81.98 Aligned_cols=227 Identities=15% Similarity=0.233 Sum_probs=109.9
Q ss_pred EEEEECCCCCCCCCCCC----CCCCCCCHHHHHHHHHHHHHHHHHHC-CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 07862134323321578----99999999999999999999987330-54306887642888414557988744435998
Q 004647 51 NLYLDMNGIIHPCFHPD----GKPAPTSYDDVFKSIFDYIDHIFLLV-RPRKLLYLAIDGVAPRAKMNQQRTRRFRAAKD 125 (740)
Q Consensus 51 nLYlDmNgIIH~c~h~~----~~~~p~te~e~~~~If~yid~lv~~V-rPrkllyiAiDGVAPrAKmnQQRsRRfrsa~e 125 (740)
-+-||.++.+|.+.+.- +.+........-..+..++.+++++. .|-+ .++++||.+|..|......||-+....
T Consensus 23 ~l~ID~~~~l~r~~~a~~~~~~~~l~~~~G~~t~~l~g~~~~l~~ll~~~i~-pv~VFDG~~~~~K~~~~~~R~~~r~~~ 101 (340)
T 1b43_A 23 KIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLFYRTINLMEAGIK-PVYVFDGEPPEFKKKELEKRREAREEA 101 (340)
T ss_dssp EEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHHHHHHHHHHHHHHTTCE-EEEEECCSCCCCSSCSSTTCCCCTTHH
T ss_pred EEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCE-EEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 8999809999999997454357703224698509999999999999968898-999962989412245678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCC
Q ss_conf 9999999999999999807656878888878--87630256289999999999999999811999864089991999999
Q 004647 126 AAEAEAEEERLRKEFEEAGKLLSAKEKPETC--DSNVITPGTQFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPG 203 (740)
Q Consensus 126 ~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~f--DsN~ITPGT~FM~~L~~~L~~yi~~kl~~dp~w~~l~VI~Sds~vPG 203 (740)
...... .+. .|..- ....+ .++.||| -|. ..++..+.. + ++.+|. .|+
T Consensus 102 ~~~~~~-------~yk-~g~~~----~~~~~~~~~~~vt~---~~~---~~~~~lL~~-~-------gip~i~----ap~ 151 (340)
T 1b43_A 102 EEKWRE-------ALE-KGEIE----EARKYAQRATRVNE---MLI---EDAKKLLEL-M-------GIPIVQ----APS 151 (340)
T ss_dssp HHHHHH-------HHH-HSCHH----HHHHHHHTSGGGTH---HHH---HHHHHHHHH-H-------TCCEEE----CSS
T ss_pred HHHHHH-------HHH-CCCHH----HHHHHHHHCCCCCH---HHH---HHHHHHHHH-C-------CCCEEE----CCH
T ss_conf 998888-------987-58999----99999975278999---999---999999998-4-------996897----576
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 71468999999853199999997289990680389977203772079964011478887543224556752000169999
Q 004647 204 EGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPG 283 (740)
Q Consensus 204 EGEHKIm~fIR~qr~~p~ydpn~~H~IyG~DADLImL~Lathe~~f~ILRe~v~~~~~~~~c~~c~~~~h~~~~c~~~~~ 283 (740)
|+|.-|...-+.- ..+.|++.|.|+++++- ++ ++|.. ...+ .+ .. +
T Consensus 152 EADa~iA~La~~g---------~~~~i~S~D~D~l~~g~----~~--v~~~~-~~~~---~~-------------~~-p- 197 (340)
T 1b43_A 152 EGEAQAAYMAAKG---------SVYASASQDYDSLLFGA----PR--LVRNL-TITG---KR-------------KL-P- 197 (340)
T ss_dssp CHHHHHHHHHHHT---------SSSEEECSSSHHHHTTC----SE--EEEST-TTCE---EE-------------EC-T-
T ss_pred HHHHHHHHHHHCC---------CEEEEECCCCCCCEECC----CE--EEEEE-CCCC---CC-------------CC-C-
T ss_conf 4999999999759---------87899716878445468----68--99973-2688---75-------------67-6-
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCHHHH
Q ss_conf 999998998887656665189745999999986608999999873135687899876330587779-9996433500599
Q 004647 284 DNPADWNGVDDTPIHKKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLP-HMPTLEIREGAIN 362 (740)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~f~~l~i~iLREyL~~e~~~~~~~~~~d~eriIDDfVfLcfl~GNDFLP-hlPsl~I~egaid 362 (740)
.... ...-.+..++..-+.+.+ . ++ -+.||.+|.|+|+||+| ++|++-.+. |+.
T Consensus 198 --------~~~~-~v~~~~~~~~~~~v~~~~----g-------l~----~~q~id~~~L~G~Dy~p~gv~GiG~kt-A~k 252 (340)
T 1b43_A 198 --------GKNV-YVEIKPELIILEEVLKEL----K-------LT----REKLIELAILVGTDYNPGGIKGIGLKK-ALE 252 (340)
T ss_dssp --------TSSC-EEEECCEEEEHHHHHHHH----T-------CC----HHHHHHHHHHHCCTTSTTCSTTCCHHH-HHH
T ss_pred --------CCCC-CCCCCEEEEEHHHHHHHH----C-------CC----HHHHHHHHHHCCCCCCCCCCCCCCHHH-HHH
T ss_conf --------5322-333450687799999880----9-------79----999999997618998888988766999-999
Q ss_pred HHHHHH
Q ss_conf 999999
Q 004647 363 LLMHVY 368 (740)
Q Consensus 363 ~L~~~Y 368 (740)
|+..|
T Consensus 253 -li~~~ 257 (340)
T 1b43_A 253 -IVRHS 257 (340)
T ss_dssp -HHHTC
T ss_pred -HHHHC
T ss_conf -99980
No 5
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A
Probab=1.00 E-value=1 Score=73.51 Aligned_cols=199 Identities=18% Similarity=0.275 Sum_probs=103.9
Q ss_pred CEEEEECCCCCCCCCCCCC----CCC----CCCHHHHHHHHHHHHHHH-HHHCCCCEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 8078621343233215789----999----999999999999999998-7330543068876428884145579887444
Q 004647 50 DNLYLDMNGIIHPCFHPDG----KPA----PTSYDDVFKSIFDYIDHI-FLLVRPRKLLYLAIDGVAPRAKMNQQRTRRF 120 (740)
Q Consensus 50 DnLYlDmNgIIH~c~h~~~----~~~----p~te~e~~~~If~yid~l-v~~VrPrkllyiAiDGVAPrAKmnQQRsRRf 120 (740)
--+-||.++.+|.+.+.-. .+. -.....+ ..++..+-++ ..-++| ++++||..|..|......|+-
T Consensus 22 ~~l~IDg~~~l~r~~~a~~~~~~~~l~~~~G~~t~~l-~g~~~~l~~ll~~~i~P----v~vFDG~~~~~k~~~~~~yk~ 96 (326)
T 1a76_A 22 KKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAY-NGVFYKTIHLLENDITP----IWVFDGEPPKLKEKTRKVRRE 96 (326)
T ss_dssp CEEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCHHH-HHHHHHHHHHHHTTCEE----EEEECCCSSCCCCSSCCSSCS
T ss_pred CEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHCCCEE----EEEEECCCCCCCHHHHHHHHH
T ss_conf 9899984999999998624345663400369953799-99999999999779969----999839596321456888888
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 359---989999999999999999807656878888878--876302562899999999999999998119998640899
Q 004647 121 RAA---KDAAEAEAEEERLRKEFEEAGKLLSAKEKPETC--DSNVITPGTQFMAVLSAALQYFIQARLNQIPGWQFTKVI 195 (740)
Q Consensus 121 rsa---~e~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~f--DsN~ITPGT~FM~~L~~~L~~yi~~kl~~dp~w~~l~VI 195 (740)
+.. .+...... +|.. .....| .+..||| .|.. .++..+. .+ ++.+|
T Consensus 97 ~R~~~~~~l~~~~~-----------~g~~----~~a~~~~~~~~~vt~---~~~~---~~~~lL~-~~-------gi~~i 147 (326)
T 1a76_A 97 MKEKAELKMKEAIK-----------KEDF----EEAAKYAKRVSYLTP---KMVE---NCKYLLS-LM-------GIPYV 147 (326)
T ss_dssp SSCSSCSCCCCCCS-----------HHHH----HTTSTTGGGGCSSCH---HHHH---HHHHHHH-HH-------TCCEE
T ss_pred HHHHHHHHHHHHHH-----------CCCH----HHHHHHHHHCCCCCH---HHHH---HHHHHHH-HC-------CCCEE
T ss_conf 77756888899997-----------6899----999999974378999---9999---9999999-84-------99857
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 91999999714689999998531999999972899906803899772037720799640114788875432245567520
Q 004647 196 LSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLA 275 (740)
Q Consensus 196 ~Sds~vPGEGEHKIm~fIR~qr~~p~ydpn~~H~IyG~DADLImL~Lathe~~f~ILRe~v~~~~~~~~c~~c~~~~h~~ 275 (740)
..|||+|--|..+-++ ...++|++.|.|+++++- ++ ++|.. ..
T Consensus 148 ----~apgEAD~~ia~La~~---------g~~~~I~S~D~Dll~~~~----~~--v~~~~-~~----------------- 190 (326)
T 1a76_A 148 ----EAPSEGEAQASYMAKK---------GDVWAVVSQDYDALLYGA----PR--VVRNL-TT----------------- 190 (326)
T ss_dssp ----ECSSCHHHHHHHHHHT---------TSSSEEECSSSGGGGGTC----SE--EEESS-SS-----------------
T ss_pred ----ECCCCHHHHHHHHHHC---------CCEEEEECCCCCCCEECC----CE--EEEEE-CC-----------------
T ss_conf ----8984099999999977---------997899558834102248----87--99950-37-----------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CCCCC
Q ss_conf 00169999999998998887656665189745999999986608999999873135687899876330587779-99964
Q 004647 276 AECHGKPGDNPADWNGVDDTPIHKKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLP-HMPTL 354 (740)
Q Consensus 276 ~~c~~~~~~~~~~~~~~~~~~~~~~~f~~l~i~iLREyL~~e~~~~~~~~~~d~eriIDDfVfLcfl~GNDFLP-hlPsl 354 (740)
..+.+++++..-+.+.+ .+ + -+.|+.+|.|+|+||+| ++|++
T Consensus 191 ----------------------~~~~~~~~~~~~v~~~~----gl-------~----~~q~id~~~L~GsD~~p~GvpGi 233 (326)
T 1a76_A 191 ----------------------TKEMPELIELNEVLEDL----RI-------S----LDDLIDIAIFMGTDYNPGGVKGI 233 (326)
T ss_dssp ----------------------CSSCCEEEEHHHHHHHH----TC-------C----HHHHHHHHHHHCCTTSTTTTTTC
T ss_pred ----------------------CCCCEEEEEHHHHHHHC----CC-------C----HHHHHHHHHHCCCCCCCCCCCCC
T ss_conf ----------------------99966998889999884----99-------9----99999999974999999899985
Q ss_pred CC
Q ss_conf 33
Q 004647 355 EI 356 (740)
Q Consensus 355 ~I 356 (740)
-.
T Consensus 234 G~ 235 (326)
T 1a76_A 234 GF 235 (326)
T ss_dssp CH
T ss_pred CH
T ss_conf 79
No 6
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=1.00 E-value=1 Score=69.96 Aligned_cols=220 Identities=15% Similarity=0.223 Sum_probs=104.8
Q ss_pred EEEEECCCCCCCCCCCCC---C-CC----CCCHHHHHHHHHHHHHHHHH-HCCCCEEEEEEECCCCCHHHHHH--HHHHH
Q ss_conf 078621343233215789---9-99----99999999999999999873-30543068876428884145579--88744
Q 004647 51 NLYLDMNGIIHPCFHPDG---K-PA----PTSYDDVFKSIFDYIDHIFL-LVRPRKLLYLAIDGVAPRAKMNQ--QRTRR 119 (740)
Q Consensus 51 nLYlDmNgIIH~c~h~~~---~-~~----p~te~e~~~~If~yid~lv~-~VrPrkllyiAiDGVAPrAKmnQ--QRsRR 119 (740)
-+.||.++.+|.+.+.-. + +- -.... ....++..+-+++. -++| ++++||.+|..|... +|+.+
T Consensus 23 ~l~IDg~~~l~r~~~a~~~~~~~~l~~~~G~~t~-a~~g~~~~l~~ll~~~i~P----v~vFDg~~~~~R~~~~~~yk~~ 97 (336)
T 1rxw_A 23 KIAVDAFNTLYQFISIIRQPDGTPLKDSQGRITS-HLSGILYRVSNMVEVGIRP----VFVFDGEPPEFKKAEIEERKKR 97 (336)
T ss_dssp EEEEEHHHHHHHHHHHSBCTTSCBCBCTTSCBCH-HHHHHHHHHHHHHHHTCEE----EEEECCSCCGGGHHHHHHHHHH
T ss_pred EEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHCCCEE----EEEECCCCCCCCCCCHHHHHHH
T ss_conf 8999869999999986252357745336898338-9999999999999889979----9998089975442106889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 4359989999999999999999807656878888878--87630256289999999999999999811999864089991
Q 004647 120 FRAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPETC--DSNVITPGTQFMAVLSAALQYFIQARLNQIPGWQFTKVILS 197 (740)
Q Consensus 120 frsa~e~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~f--DsN~ITPGT~FM~~L~~~L~~yi~~kl~~dp~w~~l~VI~S 197 (740)
...+.+.... ...+|. .....+ .++.|||. ....+.+ .+. . -++.++
T Consensus 98 R~~~~~~~~~----------~~~~g~-----~~l~~~~~~~~~vt~~--~~~~~~~----lL~-~-------~gi~~i-- 146 (336)
T 1rxw_A 98 RAEAEEMWIA----------ALQAGD-----KDAKKYAQAAGRVDEY--IVDSAKT----LLS-Y-------MGIPFV-- 146 (336)
T ss_dssp HHHHHHHHHH----------HHHHTC-----TTHHHHHHHHCCCCHH--HHHHHHH----HHH-H-------TTCCEE--
T ss_pred HHHHHHHHHH----------HHHHCH-----HHHHHHHHHHCCCCHH--HHHHHHH----HHH-H-------CCCCEE--
T ss_conf 8988999999----------998163-----9999998741568888--9999999----998-6-------799889--
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999971468999999853199999997289990680389977203772079964011478887543224556752000
Q 004647 198 DANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAE 277 (740)
Q Consensus 198 ds~vPGEGEHKIm~fIR~qr~~p~ydpn~~H~IyG~DADLImL~Lathe~~f~ILRe~v~~~~~~~~c~~c~~~~h~~~~ 277 (740)
..|||+|.-+...-+ ....++|++.|.|++.++- +++ +|.. ...+. +
T Consensus 147 --~apgeAEA~lA~la~---------~g~~~~I~S~D~Dllql~~----~~v--~~~l-~~~~~---~------------ 193 (336)
T 1rxw_A 147 --DAPSEGEAQAAYMAA---------KGDVEYTGSQDYDSLLFGS----PRL--ARNL-AITGK---R------------ 193 (336)
T ss_dssp --ECSSCHHHHHHHHHH---------TTSSSEEECSSSHHHHTTC----SEE--EESC-CC-------------------
T ss_pred --ECCCHHHHHHHHHHH---------CCCEEEEECCCCCCCEECC----CEE--EEEC-CCCCC---C------------
T ss_conf --738439999999997---------6993699737977144327----768--9943-44566---6------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 16999999999899888765666518974599999998660899999987313568789987633058777999964335
Q 004647 278 CHGKPGDNPADWNGVDDTPIHKKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIR 357 (740)
Q Consensus 278 c~~~~~~~~~~~~~~~~~~~~~~~f~~l~i~iLREyL~~e~~~~~~~~~~d~eriIDDfVfLcfl~GNDFLPhlPsl~I~ 357 (740)
+ .+. ++ .. ....++.++..-+.+.+ .+ . -+.|+.+|.|+|+|++|++|++-.+
T Consensus 194 -~-~~~---~~------~~-~~~~~~~~~~~~v~~~~----gl-------~----~~q~id~~~L~GsD~ipGv~GiG~K 246 (336)
T 1rxw_A 194 -K-LPG---KN------VY-VDVKPEIIILESNLKRL----GL-------T----REQLIDIAILVGTDYNEGVKGVGVK 246 (336)
T ss_dssp ---------------------CCCCEEEEHHHHHHHH----TC-------C----HHHHHHHHHHHCBTTBCCCTTCCHH
T ss_pred -C-CCC---CC------CC-CCCCEEEEEHHHHHHHC----CC-------C----HHHHHHHHHHCCCCCCCCCCCCCHH
T ss_conf -6-775---33------33-44550786799999880----97-------9----9999999864189988899984899
Q ss_pred CHHHHHHHHHH
Q ss_conf 00599999999
Q 004647 358 EGAINLLMHVY 368 (740)
Q Consensus 358 egaid~L~~~Y 368 (740)
. |+ .|+..|
T Consensus 247 t-A~-kLl~~~ 255 (336)
T 1rxw_A 247 K-AL-NYIKTY 255 (336)
T ss_dssp H-HH-HHHHHH
T ss_pred H-HH-HHHHHC
T ss_conf 9-99-999982
No 7
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=1.00 E-value=1 Score=65.36 Aligned_cols=224 Identities=17% Similarity=0.229 Sum_probs=108.1
Q ss_pred EEEEECCCCCCCCCCCC---CCCCCC-----CHHHHHHHHHHHHHHHHH-HCCCCEEEEEEECCCCCHHHHHHHHHHH--
Q ss_conf 07862134323321578---999999-----999999999999999873-3054306887642888414557988744--
Q 004647 51 NLYLDMNGIIHPCFHPD---GKPAPT-----SYDDVFKSIFDYIDHIFL-LVRPRKLLYLAIDGVAPRAKMNQQRTRR-- 119 (740)
Q Consensus 51 nLYlDmNgIIH~c~h~~---~~~~p~-----te~e~~~~If~yid~lv~-~VrPrkllyiAiDGVAPrAKmnQQRsRR-- 119 (740)
-+-||.++.+|.+.+.- +++.-. ....+ ..+|..+-+++. -++| ++++||.+|-.|-..-..|+
T Consensus 37 ~l~IDg~~~l~r~~~~~~~~~g~~l~~~~G~~T~al-~gf~~r~~~ll~~~i~P----v~VFDg~~p~~K~~~~~~yK~~ 111 (363)
T 3ory_A 37 IIVIDGYNALYQFLAAIRQPDGTPLMDNNGRITSHL-SGLFYRTINIVEAGIKP----VYVFDGKPPELKAREIERRKAV 111 (363)
T ss_dssp EEEEEHHHHHHHHHHHCBCTTSCBCBCTTSCBCHHH-HHHHHHHHHHHHTTCEE----EEEECSSCGGGCHHHHHHHHHH
T ss_pred EEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHCCCCC----EEEECCCCCCCHHHHHHHHHHH
T ss_conf 799950899999998631147776689999986199-99999999999769985----7997698964458889998875
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 4359989999999999999999807656878888878-876302562899999999999999998119998640899919
Q 004647 120 FRAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPETC-DSNVITPGTQFMAVLSAALQYFIQARLNQIPGWQFTKVILSD 198 (740)
Q Consensus 120 frsa~e~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~f-DsN~ITPGT~FM~~L~~~L~~yi~~kl~~dp~w~~l~VI~Sd 198 (740)
...+.+..... ..+|..-.. .+.+ .+..||| +.+..+.+.|+. + ++.+|.
T Consensus 112 R~~~~e~l~~~----------~~~g~~~~a---~~~~~~~~~vt~--~~~~~i~~lL~~-----~-------GIp~i~-- 162 (363)
T 3ory_A 112 KEEAAKKYEEA----------VQSGDLELA---RRYAMMSAKLTE--EMVRDAKSLLDA-----M-------GIPWVQ-- 162 (363)
T ss_dssp HHHHHHHHHHH----------HHHTCHHHH---HHHTCCCCCCCH--HHHHHHHHHHHH-----H-------TCCEEE--
T ss_pred HHHCHHHHHHH----------HHCCCHHHH---HHHHHCCCCCCH--HHHHHHHHHHHH-----C-------CCCEEE--
T ss_conf 43143879999----------982789999---998740256889--999999999998-----7-------998999--
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999714689999998531999999972899906803899772037720799640114788875432245567520001
Q 004647 199 ANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAEC 278 (740)
Q Consensus 199 s~vPGEGEHKIm~fIR~qr~~p~ydpn~~H~IyG~DADLImL~Lathe~~f~ILRe~v~~~~~~~~c~~c~~~~h~~~~c 278 (740)
.|||+|-=|...-+ ......|++.|.|+++++- ++ ++|.. +..+. +
T Consensus 163 --apgEADaqiA~La~---------~g~~~~I~S~D~D~l~fg~----~~--v~~~l-~~~~~---~------------- 208 (363)
T 3ory_A 163 --APAEGEAQAAYIVK---------KGDAYASASQDYDSLLFGS----PK--LVRNL-TISGR---R------------- 208 (363)
T ss_dssp --CSSCHHHHHHHHHH---------TTSCSEEECSSSHHHHTTC----SE--EEEST-TTCEE---E-------------
T ss_pred --ECCCHHHHHHHHHH---------CCCEEEEECCCCCCCCCCC----CE--EEEEE-ECCCC---C-------------
T ss_conf --68608999999997---------7996899889958332478----84--89986-62566---4-------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CCCCCCCC
Q ss_conf 69999999998998887656665189745999999986608999999873135687899876330587779-99964335
Q 004647 279 HGKPGDNPADWNGVDDTPIHKKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLP-HMPTLEIR 357 (740)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~f~~l~i~iLREyL~~e~~~~~~~~~~d~eriIDDfVfLcfl~GNDFLP-hlPsl~I~ 357 (740)
. .++ . .......+..++..-+.+.+ . .+. +.|+-+|.|+|+||+| ++|++-.+
T Consensus 209 ~-~p~---~-------~~~v~~~~~~~~~~~v~~~~----g-------l~~----~q~id~~~L~GsDy~p~GVpGIG~K 262 (363)
T 3ory_A 209 K-LPR---K-------NEYVEVKPELIELDKLLVQL----G-------ITL----ENLIDIGILLGTDYNPDGFEGIGPK 262 (363)
T ss_dssp E-CSS---T-------TCEEEECCEEEEHHHHHHHH----T-------CCH----HHHHHHHHHHCBTTBTTCSTTCCHH
T ss_pred C-CCC---C-------CCCCCCCEEEECHHHHHHHH----C-------CCH----HHHHHHHHHHCCCCCCCCCCCCCHH
T ss_conf 5-776---5-------55454551897299999985----9-------699----9999999980898888899983799
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 0059999999999
Q 004647 358 EGAINLLMHVYRR 370 (740)
Q Consensus 358 egaid~L~~~Yk~ 370 (740)
.|+ .|+.-|..
T Consensus 263 -tA~-kLl~~~gs 273 (363)
T 3ory_A 263 -KAL-QLVKAYGG 273 (363)
T ss_dssp -HHH-HHHHHHTS
T ss_pred -HHH-HHHHHCCC
T ss_conf -999-99998199
No 8
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=1.00 E-value=1 Score=62.08 Aligned_cols=172 Identities=17% Similarity=0.249 Sum_probs=87.8
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC----CCCCCCCHH
Q ss_conf 9611488999953798631244579855899964477888999998656807862134323321578----999999999
Q 004647 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPD----GKPAPTSYD 76 (740)
Q Consensus 1 MGVP~ffrWL~~rYP~i~~~~~e~~~~~~~~g~~~p~d~s~pn~n~~~~DnLYlDmNgIIH~c~h~~----~~~~p~te~ 76 (740)
|||.+|..||...-+.+ .+ ++ -.| --+=||..+.+|...... ..-.+++
T Consensus 1 MGI~GL~~~L~~~~~~~--~l-~~-----l~G-----------------k~vaIDas~wL~~~~~~~~~~l~~G~~t~-- 53 (352)
T 3qe9_Y 1 MGIQGLLQFIKEASEPI--HV-RK-----YKG-----------------QVVAVDTYCWLHKGAIACAEKLAKGEPTD-- 53 (352)
T ss_dssp -CCTTHHHHTTTSEEEE--EG-GG-----GTT-----------------SEEEEETHHHHHHHHHHTHHHHHTTCCCC--
T ss_pred CCCCHHHHHHHHHCCCC--CH-HH-----HCC-----------------CEEEEECHHHHHHHHHCCCHHHCCCCCCH--
T ss_conf 98211799998618867--78-99-----489-----------------67999328999876650204650997808--
Q ss_pred HHHHHHHHHHHHH-HHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 9999999999998-733054306887642888414557988744435998999999999999999980765687888887
Q 004647 77 DVFKSIFDYIDHI-FLLVRPRKLLYLAIDGVAPRAKMNQQRTRRFRAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPET 155 (740)
Q Consensus 77 e~~~~If~yid~l-v~~VrPrkllyiAiDGVAPrAKmnQQRsRRfrsa~e~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~ 155 (740)
.+..-+...+..+ -.-|+| ++.+||.+|-.|-....+||-+.......... ...+|... ...+.
T Consensus 54 ~l~~~~~r~l~~L~~~gI~P----vfVFDG~~~p~Kk~~~~~Rr~~r~~~~~~~~~--------~~~~g~~~---~a~~~ 118 (352)
T 3qe9_Y 54 RYVGFCMKFVNMLLSHGIKP----ILVFDGCTLPSKKEVERSRRERRQANLLKGKQ--------LLREGKVS---EAREC 118 (352)
T ss_dssp HHHHHHHHHHHHHHHTTCEE----EEEECCSCCTTTHHHHHHHHHHHHHHHHHHHH--------HTTSSCCH---HHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEE----EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH--------HHHHCCHH---HHHHH
T ss_conf 99999999999999869879----99977998378888999987777877899999--------99817989---99999
Q ss_pred CC-CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf 88-76302562899999999999999998119998640899919999997146899999985319999999728999068
Q 004647 156 CD-SNVITPGTQFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLD 234 (740)
Q Consensus 156 fD-sN~ITPGT~FM~~L~~~L~~yi~~kl~~dp~w~~l~VI~Sds~vPGEGEHKIm~fIR~qr~~p~ydpn~~H~IyG~D 234 (740)
|- +..||| . +...++..+.. -++.++.+ |+|+|--|.-.-+. .....|++.|
T Consensus 119 f~~~~~vt~--~----~~~~i~~~L~~--------~gIp~i~a----p~EADaqiA~La~~---------g~~~~I~S~D 171 (352)
T 3qe9_Y 119 FTRSINITH--A----MAHKVIKAARS--------QGVDCLVA----PYEADAQLAYLNKA---------GIVQAIITED 171 (352)
T ss_dssp HGGGCCCCH--H----HHHHHHHHHHH--------TTCEEEEC----SSCHHHHHHHHHHT---------TSCSEEECSC
T ss_pred HHHCCCCCH--H----HHHHHHHHHHH--------CCCCEEEC----CCCHHHHHHHHHHC---------CCEEEEEECC
T ss_conf 862178999--9----99999999998--------09938977----82369999999987---------9968999178
Q ss_pred HHHHHHH
Q ss_conf 0389977
Q 004647 235 ADLIMLS 241 (740)
Q Consensus 235 ADLImL~ 241 (740)
.|+++++
T Consensus 172 ~Dll~~~ 178 (352)
T 3qe9_Y 172 SALLAFG 178 (352)
T ss_dssp GGGGGGT
T ss_pred CCCCCCC
T ss_conf 5821206
No 9
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=1.00 E-value=1 Score=59.58 Aligned_cols=230 Identities=19% Similarity=0.245 Sum_probs=119.2
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC--CCCCCHH---
Q ss_conf 61148899995379863124457985589996447788899999865680786213432332157899--9999999---
Q 004647 2 GVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGK--PAPTSYD--- 76 (740)
Q Consensus 2 GVP~ffrWL~~rYP~i~~~~~e~~~~~~~~g~~~p~d~s~pn~n~~~~DnLYlDmNgIIH~c~h~~~~--~~p~te~--- 76 (740)
||++|...|...-|.++..+. +.. -.| --+-||.++++|.+.|.-.. ..-.+.+
T Consensus 1 GI~GL~~~L~~~~~~~~~~~~--------------l~~----l~g---~~l~IDg~~~lyr~~~a~~~~~~~l~~~~G~~ 59 (379)
T 1ul1_X 1 GIQGLAKLIADVAPSAIREND--------------IKS----YFG---RKVAIDASMSIYQFLIAVRQGGDVLQNEEGET 59 (379)
T ss_dssp CCTTHHHHHHTTCTTSCCEEC--------------GGG----GTT---CCEEEEHHHHHHHHHSCC-------------C
T ss_pred CCCHHHHHHHHHCCCCCEEEC--------------HHH----CCC---CEEEEECHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 947169999875534553427--------------899----099---98999714999999983787653568689988
Q ss_pred -HHHHHHHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf -9999999999998733-054306887642888414557--9887-4443599899999999999999998076568788
Q 004647 77 -DVFKSIFDYIDHIFLL-VRPRKLLYLAIDGVAPRAKMN--QQRT-RRFRAAKDAAEAEAEEERLRKEFEEAGKLLSAKE 151 (740)
Q Consensus 77 -e~~~~If~yid~lv~~-VrPrkllyiAiDGVAPrAKmn--QQRs-RRfrsa~e~~~~~~~~~~~~~~~~~eg~~~~~~~ 151 (740)
.-...+|..+-+++.. ++| +| ++||..|..|-. .+|. +|-.+..+... ...+|.. .
T Consensus 60 t~~l~g~~~~~~~ll~~~i~P---~~-VFDG~~~~~K~~~~~~yk~~R~~~~~~~~~-----------~~~~g~~----~ 120 (379)
T 1ul1_X 60 TSHLMGMFYRTIRMMENGIKP---VY-VFDGKPPQLKSGELAKRSERRAEAEKQLQQ-----------AQAAGAE----Q 120 (379)
T ss_dssp CHHHHHHHHHHHHHHHTTCCE---EE-EECCSCCSCCCCCCCCC------------------------------------
T ss_pred CHHHHHHHHHHHHHHHCCCCE---EE-EEECCCCCCCCCHHHHHHHHHHHHHHHHHH-----------HHHCCCH----H
T ss_conf 259999999999999779986---99-983978322422177777656677777788-----------8871797----8
Q ss_pred CCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf 888788--763025628999999999999999981199986408999199999971468999999853199999997289
Q 004647 152 KPETCD--SNVITPGTQFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHC 229 (740)
Q Consensus 152 ~~~~fD--sN~ITPGT~FM~~L~~~L~~yi~~kl~~dp~w~~l~VI~Sds~vPGEGEHKIm~fIR~qr~~p~ydpn~~H~ 229 (740)
....|. +..||+ +-+..+.+.|+ .+ ++.+|. .|||+|-=|...-+.- ...+
T Consensus 121 ~~~~~~~~~~~vt~--~~~~~~~~lL~-----~~-------Gi~~i~----apgEADd~iA~La~~g---------~~~~ 173 (379)
T 1ul1_X 121 EVEKFTKRLVKVTK--QHNDECKHLLS-----LM-------GIPYLD----APSEAEASCAALVKAG---------KVYA 173 (379)
T ss_dssp --------CCCCCC--SCHHHHHHHHH-----HH-------TCCEEE----CSSCHHHHHHHHHHHT---------SSSE
T ss_pred HHHHHHHHCCCCCH--HHHHHHHHHHH-----HC-------CCCEEC----CCCCHHHHHHHHHHCC---------CEEE
T ss_conf 89999863247999--99999999999-----85-------998204----8873999999999659---------8679
Q ss_pred EEECCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHH
Q ss_conf 99068038997720377207996401147888754322455675200016999999999899888765666518974599
Q 004647 230 LYGLDADLIMLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPIHKKKYQFLNIWV 309 (740)
Q Consensus 230 IyG~DADLImL~Lathe~~f~ILRe~v~~~~~~~~c~~c~~~~h~~~~c~~~~~~~~~~~~~~~~~~~~~~~f~~l~i~i 309 (740)
|.+.|.|+++++- ++ +++.. .+.+ ..+..+..++..-
T Consensus 174 iiS~D~Dll~~g~----~~--v~~~~-~~~~------------------------------------~~k~~~~~~~~~~ 210 (379)
T 1ul1_X 174 AATEDMDCLTFGS----PV--LMRHL-TASE------------------------------------AKKLPIQEFHLSR 210 (379)
T ss_dssp EECSCTHHHHTTC----SE--EEECS-SCCC-------------------------------------CCCCEEEEEHHH
T ss_pred EEECCCCCCCCCC----CE--EEEEE-CCCC------------------------------------CCCCCEEEEEHHH
T ss_conf 9826857010156----64--99970-5565------------------------------------6767719980999
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999866089999998731356878998763305877799996433
Q 004647 310 LREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEI 356 (740)
Q Consensus 310 LREyL~~e~~~~~~~~~~d~eriIDDfVfLcfl~GNDFLPhlPsl~I 356 (740)
+.+.+ .+ + -+.|+-+|.|+|+||.+++|++-.
T Consensus 211 v~~~~----gl-------~----~~q~id~~~L~G~D~~d~IpGIG~ 242 (379)
T 1ul1_X 211 ILQEL----GL-------N----QEQFVDLCILLGSDYCESIRGIGP 242 (379)
T ss_dssp HHHHH----TC-------C----HHHHHHHHHHHHCSSSCCCTTCCH
T ss_pred HHHHH----CC-------C----HHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf 99881----99-------9----999999999809976789998579
No 10
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=55.38 Aligned_cols=222 Identities=18% Similarity=0.277 Sum_probs=108.9
Q ss_pred EEEEECCCCCCCCCCCCCC----CCC---CCHHHHHHHHHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHH--HHHHHH
Q ss_conf 0786213432332157899----999---99999999999999998733-0543068876428884145579--887444
Q 004647 51 NLYLDMNGIIHPCFHPDGK----PAP---TSYDDVFKSIFDYIDHIFLL-VRPRKLLYLAIDGVAPRAKMNQ--QRTRRF 120 (740)
Q Consensus 51 nLYlDmNgIIH~c~h~~~~----~~p---~te~e~~~~If~yid~lv~~-VrPrkllyiAiDGVAPrAKmnQ--QRsRRf 120 (740)
-+-||.++.+|.+.+.-.. +-. .........++..+-+++.. ++| ++++||..|-.|-.. +|..+.
T Consensus 20 ~l~IDg~~~l~r~~~a~~~~~g~~l~~~~G~~t~al~g~~~~~~~ll~~~i~P----v~vFDG~~~~~r~~~~~~yk~~R 95 (346)
T 2izo_A 20 RVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGLFYRTINILEEGVIP----IYVFDGKPPEQKSEELERRRKAK 95 (346)
T ss_dssp EEEEEHHHHHHHHHHSCCCC---CCBCSSSCBCHHHHHHHHHHHHHHHHTEEE----EEEECC-----------------
T ss_pred EEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCE----EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 89998299999999851533566354468983379999999999999779918----99977999410124778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 3599899999999999999998076568788888788--76302562899999999999999998119998640899919
Q 004647 121 RAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPETCD--SNVITPGTQFMAVLSAALQYFIQARLNQIPGWQFTKVILSD 198 (740)
Q Consensus 121 rsa~e~~~~~~~~~~~~~~~~~eg~~~~~~~~~~~fD--sN~ITPGT~FM~~L~~~L~~yi~~kl~~dp~w~~l~VI~Sd 198 (740)
..+.+. +. .....|.. .....+. +..||| +.+..+.+.|+. + ++.+|.
T Consensus 96 ~~~~~~---------l~-~~~~~g~~----~~a~~~~~~~~~vt~--~~~~~~~~lL~~-----~-------gi~~i~-- 145 (346)
T 2izo_A 96 EEAERK---------LE-RAKSEGKI----EELRKYSQAILRLSN--IMVEESKKLLRA-----M-------GIPIVQ-- 145 (346)
T ss_dssp -------------------------------------------CH--HHHHHHHHHHHH-----H-------TCCEEE--
T ss_pred HHHHHH---------HH-HHHHCCCH----HHHHHHHHHCCCCCH--HHHHHHHHHHHH-----C-------CCCEEE--
T ss_conf 876899---------99-99865899----999999863167999--999999999998-----7-------998897--
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999714689999998531999999972899906803899772037720799640114788875432245567520001
Q 004647 199 ANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAEC 278 (740)
Q Consensus 199 s~vPGEGEHKIm~fIR~qr~~p~ydpn~~H~IyG~DADLImL~Lathe~~f~ILRe~v~~~~~~~~c~~c~~~~h~~~~c 278 (740)
.|||+|-=|--.-+. .....|++.|.|+++++- ++ +++.. ...+. +
T Consensus 146 --ap~EADa~ia~La~~---------g~~~~I~S~D~D~l~~~~----~~--v~~~~-~~~~~---~------------- 191 (346)
T 2izo_A 146 --APSEGEAEAAYLNKL---------GLSWAAASQDYDAILFGA----KR--LVRNL-TITGK---R------------- 191 (346)
T ss_dssp --CSSCHHHHHHHHHHT---------TSSSEEECSSSHHHHTTC----SE--EEESS-CC--------------------
T ss_pred --CCCCHHHHHHHHHHC---------CCEEEEECCCCCCCEECC----CE--EEEEE-CCCCC---C-------------
T ss_conf --487599999999967---------985899778877063257----75--99972-45556---5-------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CCCCCCCC
Q ss_conf 69999999998998887656665189745999999986608999999873135687899876330587779-99964335
Q 004647 279 HGKPGDNPADWNGVDDTPIHKKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLP-HMPTLEIR 357 (740)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~f~~l~i~iLREyL~~e~~~~~~~~~~d~eriIDDfVfLcfl~GNDFLP-hlPsl~I~ 357 (740)
+ .+. .+ . .....+.+++..-+.+.+ .+ . -+.|+-+|.|+|+|++| .+|++-.+
T Consensus 192 ~-~p~---~~------~-~~~~~~~~~~~~~v~~~~----gl-------~----~~q~id~~~L~G~D~~p~Gv~GIG~K 245 (346)
T 2izo_A 192 K-LPN---KD------V-YVEIKPELIETEILLKKL----GI-------T----REQLIDIGILIGTDYNPDGIRGIGPE 245 (346)
T ss_dssp ------------------CCCCCCEEEEHHHHHHHH----TC-------C----HHHHHHHHHHHCCSSSTTCSTTCCHH
T ss_pred C-CCC---CC------C-CCCCCEEEEEHHHHHHHC----CC-------C----HHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf 6-765---33------3-455551887799989872----99-------8----99999999972898898899983799
Q ss_pred CHHHHHHHHHH
Q ss_conf 00599999999
Q 004647 358 EGAINLLMHVY 368 (740)
Q Consensus 358 egaid~L~~~Y 368 (740)
. |+. |+..|
T Consensus 246 t-A~k-Li~~~ 254 (346)
T 2izo_A 246 R-ALK-IIKKY 254 (346)
T ss_dssp H-HHH-HHHHS
T ss_pred H-HHH-HHHHC
T ss_conf 9-999-99986
Done!