Query 004648
Match_columns 740
No_of_seqs 203 out of 1073
Neff 8.6
Searched_HMMs 29240
Date Tue Mar 26 17:48:58 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004648.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1948-1951//hhsearch_pdb/004648hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ldj_A Cullin homolog 1, CUL-1 1.0 1 1 1144.2 66.4 711 9-740 1-760 (760)
2 2hye_C Cullin-4A, CUL-4A; beta 1.0 1 1 1121.0 68.0 697 5-740 55-759 (759)
3 3dpl_C Cullin-5; ubiquitin, NE 1.0 1 1 634.4 31.9 357 383-740 3-382 (382)
4 4ap2_B Cullin-3, CUL-3; ubiqui 1.0 1 1 543.3 39.3 369 6-399 27-397 (410)
5 4eoz_B Cullin-3, CUL-3; E3 ubi 1.0 1 1 520.7 29.6 356 3-380 7-364 (364)
6 2wzk_A Cullin-5, CUL-5; UBL co 1.0 1 1 506.2 37.6 359 3-381 9-381 (391)
7 4a64_A Cullin-4B, CUL4B, CUL-4 1.0 1 1 496.9 37.5 347 3-381 4-353 (354)
8 1iuy_A Cullin-3 homologue; win 1.0 1 1 176.5 -0.0 83 658-740 10-92 (92)
9 3o2p_E Cell division control p 1.0 1 1 175.1 4.3 82 658-740 7-88 (88)
10 2do7_A Cullin-4B, CUL-4B; heli 1.0 1 1 174.8 3.3 81 658-740 15-95 (101)
No 1
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=1.00 E-value=1 Score=1144.22 Aligned_cols=711 Identities=29% Similarity=0.517 Sum_probs=655.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC-------------------CCCCCCHHHHHH
Q ss_conf 8989999999999999985189999999576889999996742057888-------------------867530899999
Q 004648 9 FEESWALMEQGIAKLKKILKGLPEPPFASEECMTLYTIVYDLCSIELPS-------------------AQDCSYSQRLYV 69 (740)
Q Consensus 9 f~~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vy~lc~~~~~~-------------------~~~~~~~e~LY~ 69 (740)
||++|+.|++||+.|. ++ .+++..+||++|++||++|+++... .|...+|+.||+
T Consensus 1 f~~~W~~L~~ai~~I~---~~---~~~s~~~~~~LY~~vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~ 74 (760)
T 1ldj_A 1 LDQIWDDLRAGIQQVY---TR---QSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYK 74 (760)
T ss_dssp CHHHHHHHHHHHHHHT---TC---CCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHH
T ss_pred CHHHHHHHHHHHHHHH---HC---CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 9505999999999998---66---99987899999999999966875467876543221223555345674111899999
Q ss_pred HHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCC------CCCHHHHHHHHHH
Q ss_conf 9999999988731120000112056999999999999999999999840444567762079------8517778999999
Q 004648 70 KYGEVFEEHMQSDVLPSFEDKRGEFMLREFVKQWENINVMGRWLLRFFEYLDRFYVRSQAG------LASLIEVPVVVFR 143 (740)
Q Consensus 70 ~l~~~l~~~l~~~v~~~l~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~------~~~i~~~~l~~f~ 143 (740)
+++++++.|+...+. .+....++.+|..|...|.+|+.++.+|+++|+||||+||. +.. .++|+++|+.+||
T Consensus 75 ~l~~~l~~~l~~~~~-~~~~~~~e~lL~~~~~~W~~~~~~~~~i~~if~YLdR~yv~-~~~~~g~~~~~~I~~lgL~~fr 152 (760)
T 1ldj_A 75 RLKEFLKNYLTNLLK-DGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVR-RECDEGRKGIYEIYSLALVTWR 152 (760)
T ss_dssp HHHHHHHHHHHHHHH-TTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSS-CCC-------CCHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHH
T ss_conf 999999999999999-87514758999999999999999999988999886789873-3553468876619999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC---------CHHCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999976999999999999999469926989899999999870876---------5130389779999999999999998
Q 004648 144 DRVYKDLKRDVRDTVIALIDEEREGEKIDRALVKKAVDIFVGIGIL---------DMDFYRQDFEEQMIDDAGCYYLRKA 214 (740)
Q Consensus 144 ~~i~~~l~~~l~~~ll~~I~~~R~g~~id~~~i~~~i~~~~~l~~~---------~~~~Y~~~FE~~~l~~t~~yY~~~s 214 (740)
+.+|.++.+++.++++.+|.++|+|+.+|+.+++++++||+.+|.+ .+.+|.+.||++||++|..||+.++
T Consensus 153 ~~vf~~l~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~~~~~~~~l~vY~~~FE~~fL~~t~~fY~~es 232 (760)
T 1ldj_A 153 DCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRES 232 (760)
T ss_dssp HHHTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999986899877899999999999837664432123444244389889999999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 86762499128999999999999988802059142999999999999999899999821334789860184645999999
Q 004648 215 SSWILNDSCPEYMIKAEECLKKERDRAVYYFHTRSESKLIEKVQHELLVVHRNQLLENEKSGCRALISQEKFDDLSRIFR 294 (740)
Q Consensus 215 ~~~l~~~s~~eYl~~v~~~l~eE~~r~~~~L~~~t~~kl~~~l~~~LI~~~~~~ll~~~~~~~~~ll~~~~~~~L~~ly~ 294 (740)
+.|+++.++++||++|+.++++|.+||..||+++|.+++.++|+++||.+|.+.|. +||..||++++.++|++||+
T Consensus 233 ~~~l~~~~~~~Yl~~~e~~l~eE~~R~~~yL~~~t~~~l~~~~~~~Li~~~~~~l~----~~~~~ll~~~~~~dL~~my~ 308 (760)
T 1ldj_A 233 TEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFH----TEFQNLLDADKNEDLGRMYN 308 (760)
T ss_dssp HHHHHHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHH----HHHHHHHHSCCTTHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCCCHHHHHHHHH
T ss_conf 99987098999999999999999999998568736999999999999999999999----98999997388889999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 52120299177999999999999999998568866421344359999999999999999999860899889999999999
Q 004648 295 LYDETRTGLEPVAGIFKQYFIDQGKALVHQAEEDVRNKTANMEQNLVGKILELHDKFMAYVSICFGDHKLFLMALKEAFE 374 (740)
Q Consensus 295 L~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~af~ 374 (740)
||+++++|++.++..|++||++.|.+++.+.... ....+..||+.|+++|++|+.++..||++|+.|..++++||+
T Consensus 309 L~~rv~~gl~~l~~~~~~~i~~~G~~~v~~~~~~----~~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~al~~af~ 384 (760)
T 1ldj_A 309 LVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEA----ALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACG 384 (760)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTS----GGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 8674754389999999999999879999876303----345779999999999999999999976786899999999999
Q ss_pred HHHCCCC------CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9961677------8647098999999787126898999968899999977677503312578999999999978629999
Q 004648 375 VFCNESI------VEISSAEILATFCDNLFKNSDAEKLSDETVERTMDKVIVLLGYFKYKDLFAEFYRKKLARRLLFDKG 448 (740)
Q Consensus 375 ~~~N~~~------~~~~~~e~La~y~d~~l~~~~~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~~~ 448 (740)
.|+|.+. ...++||+||+|||.+||+|. ++.++++++..+++++.||+|+++||+|+.+|+++||+|||.+++
T Consensus 385 ~~iN~~~~~~~~~~~~~~~E~la~y~D~~Lkk~~-k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s 463 (760)
T 1ldj_A 385 RFINNNAVTKMAQSSSKSPELLARYCDSLLKKSS-KNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNS 463 (760)
T ss_dssp HHHHSSHHHHHHTSTTHHHHHHHHHHHHHHBCCS-SCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHTTCB
T ss_pred HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9856885434444443328999888699871788-889788899999999999998088899999999999998457999
Q ss_pred CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCH
Q ss_conf 99599999999998731890378699999879988999999999861089999987547887315999999999954877
Q 004648 449 GNKDYDKTFLSKLKQHSGGHFTTKMEGMITDVVLARENQTALDDWFSSNLNEKPQFDLSVMVLTTGSWPSYKFFGLNLPS 528 (740)
Q Consensus 449 ~s~~~E~~~i~~Lk~~~G~~~~~kl~~M~~D~~~S~~~~~~f~~~~~~~~~~~~~~~~~~~vLt~~~WP~~~~~~~~lP~ 528 (740)
.+.+.|+.||++||.+||.+||++|++||+|+..|++++..|++++.++ ...+++|+|.|||+++||.++..++.+|+
T Consensus 464 ~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~--~~~~~~~~v~VLs~~~WP~~~~~~~~lP~ 541 (760)
T 1ldj_A 464 ASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNS--EPLDLDFSIQVLSSGSWPFQQSCTFALPS 541 (760)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--CCCSSEEEEEEEETTTSCCCCCSCCCCCG
T ss_pred CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCEEEEECCCCCCCCCCCCCCCCCH
T ss_conf 9849999999999988581779999999999999999999999987404--57788705886489988999987875899
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEEEECCEEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 48999999998984049983157215866157887765813899861999999973528997669889998099989999
Q 004648 529 EMVKGVESFKKFYGTKTKARKLTWIYSLGNCHVNGKFELKAIELIVSTYQAACLMLFNDADRLSFSEILTQLNLNKGDLI 608 (740)
Q Consensus 529 ~l~~~~~~f~~~Y~~k~~~R~L~w~~~l~~~~i~~~~~~~~~~l~~s~~Q~~iLl~Fn~~~~~t~~el~~~t~i~~~~l~ 608 (740)
+|..+++.|++||..+|+||+|+|.|++|+|+++++|++++++++||++||+|||+||+.+++|+++|++.||++.++++
T Consensus 542 ~l~~~~~~F~~fY~~~~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~~t~~ei~~~t~i~~~~l~ 621 (760)
T 1ldj_A 542 ELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILA 621 (760)
T ss_dssp GGHHHHHHHHHHTTTTCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 99999999999999747997688755656189999988935999975999999998469998379999999790999999
Q ss_pred HHHHHHHCCCCCCCCCCC-----CCCCCCCCCCEEECCCCCCCCCCEECCCCCCC----HHHHHHHHHHHHHHHCHHHHE
Q ss_conf 998782203652000289-----98888899916663469888761521699851----045567869964221010310
Q 004648 609 RVLHSLSCSKHKILNKEP-----NTKTISQSDSFEFNAKFTDRMRRIRIPLPPVD----DRREINEDVGKDRRHNIDAAL 679 (740)
Q Consensus 609 ~~L~~L~~~k~~iL~~~~-----~~~~i~~~~~~~~N~~F~~~~~~i~i~~~~~~----e~~~~~~~v~~~R~~~i~A~I 679 (740)
++|.+|+ +.+||.+.| .++.+.+++.|.+|.+|++++.||+|+.+... |...+.+.+.+||++.|+|||
T Consensus 622 r~L~~l~--k~~iL~~~~~~~~~~~~~~~~~~~f~lN~~F~~k~~ri~i~~~~~~e~~~e~~~~~~~v~~dR~~~i~AaI 699 (760)
T 1ldj_A 622 QVLQILL--KSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAI 699 (760)
T ss_dssp HHHHHHH--HTTTEECSCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HCCCCEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHEEEE
T ss_conf 9999998--78950227875444567799999899502555774279856731023413555478889997776700001
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEECC
Q ss_conf 1010488888926899999998237899994689999886132101124799999613169
Q 004648 680 VRIMKSRKVLGYQQLISECVEMLSHSFKPEIKAIKSRIDDLINREFIERDSKDPTMFNYSA 740 (740)
Q Consensus 680 VRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIekeyi~r~~~d~~~y~Yia 740 (740)
|||||+||+|+|++|+++|+++++++|.|++.+||+|||+||+||||+|+++|+++|+|+|
T Consensus 700 VRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~~~~~~y~YlA 760 (760)
T 1ldj_A 700 VRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 760 (760)
T ss_dssp HHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECSSSTTEEEECC
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCEEECC
T ss_conf 0133314777699999999999855589998999999999862142331799986246379
No 2
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=1.00 E-value=1 Score=1120.98 Aligned_cols=697 Identities=31% Similarity=0.581 Sum_probs=648.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 65888989999999999999985189999999576889999996742057888867530899999999999998873112
Q 004648 5 KKLSFEESWALMEQGIAKLKKILKGLPEPPFASEECMTLYTIVYDLCSIELPSAQDCSYSQRLYVKYGEVFEEHMQSDVL 84 (740)
Q Consensus 5 ~~~~f~~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vy~lc~~~~~~~~~~~~~e~LY~~l~~~l~~~l~~~v~ 84 (740)
+..+||++|+.|++||+.| +++++. +.+ ||++|+.||++|+++ +|+.||+++++.++.|+...+
T Consensus 55 ~~~~~e~~W~~L~~ai~~I---~~~~~~-~~s---~e~LY~~vy~lc~~k--------~~~~LY~~l~~~~~~~l~~~~- 118 (759)
T 2hye_C 55 PDNYTQDTWRKLHEAVRAV---QSSTSI-RYN---LEELYQAVENLCSHK--------VSPMLYKQLRQACEDHVQAQI- 118 (759)
T ss_dssp SCCTTTTHHHHHHHHHHTT---STTCCC-SSC---HHHHHHHHHHHCCTT--------THHHHHHHHHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHHHH---HHCCCC-CCC---HHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHHHHH-
T ss_conf 9621888999999999999---837998-887---999999999999437--------799999999999999999999-
Q ss_pred CHHHC-C-CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q ss_conf 00001-1-20569999999999999999999998404445677620798517778999999999997--69999999999
Q 004648 85 PSFED-K-RGEFMLREFVKQWENINVMGRWLLRFFEYLDRFYVRSQAGLASLIEVPVVVFRDRVYKD--LKRDVRDTVIA 160 (740)
Q Consensus 85 ~~l~~-~-~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~~i~~~~l~~f~~~i~~~--l~~~l~~~ll~ 160 (740)
+.+.. . .++.+|..|...|.+|+.++.+|+++|+||||+||..+.+.++|+++|+.+|++.||.+ +.+++.++++.
T Consensus 119 ~~l~~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~ 198 (759)
T 2hye_C 119 LPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILL 198 (759)
T ss_dssp HHHTSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99875568879999999999999999999999999873708762799988699999999999971577689999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999469926989899999999870876513038977999999999999999886762499128999999999999988
Q 004648 161 LIDEEREGEKIDRALVKKAVDIFVGIGILDMDFYRQDFEEQMIDDAGCYYLRKASSWILNDSCPEYMIKAEECLKKERDR 240 (740)
Q Consensus 161 ~I~~~R~g~~id~~~i~~~i~~~~~l~~~~~~~Y~~~FE~~~l~~t~~yY~~~s~~~l~~~s~~eYl~~v~~~l~eE~~r 240 (740)
+|.++|+|+.+|+.+++++++||+++ ++|.+.||++||++|.+||+.+++.|+++.++++|+.+|+.++++|.+|
T Consensus 199 lI~~eR~Ge~id~~llk~vi~ml~~L-----~vY~~~FE~~fL~~T~~fY~~e~~~~l~~~~~~~Yl~~~e~rl~eE~~r 273 (759)
T 2hye_C 199 LIERERSGEAVDRSLLRSLLGMLSDL-----QVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDR 273 (759)
T ss_dssp HHHTTTTTCCCCHHHHHHHHHHHHHT-----TCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 99998668977489999999983015-----2778998999999999999999999988499999999999999999999
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 80205914299999999999999989999982133478986018464599999952120299177999999999999999
Q 004648 241 AVYYFHTRSESKLIEKVQHELLVVHRNQLLENEKSGCRALISQEKFDDLSRIFRLYDETRTGLEPVAGIFKQYFIDQGKA 320 (740)
Q Consensus 241 ~~~~L~~~t~~kl~~~l~~~LI~~~~~~ll~~~~~~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g~~ 320 (740)
|..||+++|.+++.++|+++||.+|.+.+++ +|+..||.+++.++|++||+|++++++|++.++..|++||++.|.+
T Consensus 274 ~~~yL~~~t~~~l~~~~~~~Li~~~~~~ll~---~~~~~lL~~~~~~dL~~mY~L~~rv~~~l~~l~~~~~~~I~~~g~~ 350 (759)
T 2hye_C 274 VITYLDHSTQKPLIACVEKQLLGEHLTAILQ---KGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTA 350 (759)
T ss_dssp HTTTSCTTTHHHHHHHHHHHHTTTCSHHHHH---TTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9985386369999999999989999999999---6499998238799999999987527363899999999999997087
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 99856886642134435999999999999999999986089988999999999999616778647098999999787126
Q 004648 321 LVHQAEEDVRNKTANMEQNLVGKILELHDKFMAYVSICFGDHKLFLMALKEAFEVFCNESIVEISSAEILATFCDNLFKN 400 (740)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~N~~~~~~~~~e~La~y~d~~l~~ 400 (740)
++.+.. .+..||+.|+++|++|+.++..||++|+.|..++++||+.|+|.+. .+++|+||+|||.+||+
T Consensus 351 iv~~~~---------~~~~~V~~ll~~~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~--~~~~E~la~y~D~~Lk~ 419 (759)
T 2hye_C 351 IVINPE---------KDKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKRP--NKPAELIAKHVDSKLRA 419 (759)
T ss_dssp HHSCGG---------GTTTHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHTTSC--SHHHHHHHHHHHHHHSS
T ss_pred HHCCCC---------CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHCC
T ss_conf 753720---------2789999999999999999998668988999999999999977899--73089999999998536
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 89899996889999997767750331257899999999997862999999599999999998731890378699999879
Q 004648 401 SDAEKLSDETVERTMDKVIVLLGYFKYKDLFAEFYRKKLARRLLFDKGGNKDYDKTFLSKLKQHSGGHFTTKMEGMITDV 480 (740)
Q Consensus 401 ~~~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~~~~s~~~E~~~i~~Lk~~~G~~~~~kl~~M~~D~ 480 (740)
|. ++.+++|++..+++++.||+|+++||+|+.+|+++||+|||.+++.+.+.|+.||++||.+||.+||++|++||+|+
T Consensus 420 ~~-k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di 498 (759)
T 2hye_C 420 GN-KEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDM 498 (759)
T ss_dssp CG-GGCCSTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTTTCTTTTHHHHHHHHHH
T ss_pred CC-CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_conf 78-88988899999987644653018799999999999999847799998599999999999884758899999999879
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEE
Q ss_conf 98899999999986108999998754788731599999999995487748999999998984049983157215866157
Q 004648 481 VLARENQTALDDWFSSNLNEKPQFDLSVMVLTTGSWPSYKFFGLNLPSEMVKGVESFKKFYGTKTKARKLTWIYSLGNCH 560 (740)
Q Consensus 481 ~~S~~~~~~f~~~~~~~~~~~~~~~~~~~vLt~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y~~k~~~R~L~w~~~l~~~~ 560 (740)
..|++++..|++++...+. ..+++|+|.|||+++||.++..++.+|++|..+++.|++||..+|+||+|+|.+++|+|+
T Consensus 499 ~~S~~l~~~f~~~~~~~~~-~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~~~gRkL~W~~~lg~~~ 577 (759)
T 2hye_C 499 ELSKDIMVHFKQHMQNQSD-SGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAV 577 (759)
T ss_dssp HHHHHHHHHHHHHHHTTCC-CCCCEEEEEEEETTTSCCCCCCCCCCCHHHHHHHHHHHHHHHTTSCSEECCBCGGGCEEE
T ss_pred HHHHHHHHHHHHHHHCCCC-CCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEE
T ss_conf 9989999999999853467-777744798847999999998888698999999999999998607997887015667589
Q ss_pred EEEEECCEEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 88776581389986199999997352899766988999809998999999878220365200028998888899916663
Q 004648 561 VNGKFELKAIELIVSTYQAACLMLFNDADRLSFSEILTQLNLNKGDLIRVLHSLSCSKHKILNKEPNTKTISQSDSFEFN 640 (740)
Q Consensus 561 i~~~~~~~~~~l~~s~~Q~~iLl~Fn~~~~~t~~el~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~~N 640 (740)
++++|++++++++||++||+|||+||+.+++|+++|++.||+++++++++|++|+++|.+||.+.|+++.+.+++.|.+|
T Consensus 578 l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~lt~~ei~~~t~i~~~~l~r~L~sL~~~k~~vL~~~p~~~~v~~~d~f~lN 657 (759)
T 2hye_C 578 LKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFIFN 657 (759)
T ss_dssp EECCCSSCCCEEEEEHHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEETTCSSSCCSSCEEEEC
T ss_pred EEEEECCCEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEEEE
T ss_conf 99996793499997299999999855899837999999979099999999999980577635117888879999989962
Q ss_pred CCCCCCCCCEECCCCCC----CHHHHHHHHHHHHHHHCHHHHEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 46988876152169985----10455678699642210103101010488888926899999998237899994689999
Q 004648 641 AKFTDRMRRIRIPLPPV----DDRREINEDVGKDRRHNIDAALVRIMKSRKVLGYQQLISECVEMLSHSFKPEIKAIKSR 716 (740)
Q Consensus 641 ~~F~~~~~~i~i~~~~~----~e~~~~~~~v~~~R~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~ 716 (740)
.+|+++..|++|+.+.. +|.+++.+.+.+||++.||||||||||+||+|+|++|+.+|+++++ |+|++.+||+|
T Consensus 658 ~~f~~~~~riki~~i~~~e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~--F~p~~~~IKk~ 735 (759)
T 2hye_C 658 GEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLK--FPVKPGDLKKR 735 (759)
T ss_dssp CCCCCSCSSEECGGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEETHHHHHHHHHHSS--SCCCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC--CCCCHHHHHHH
T ss_conf 2566876478756624555412334268778888999999997999840577779999999999807--89998999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCEECC
Q ss_conf 886132101124799999613169
Q 004648 717 IDDLINREFIERDSKDPTMFNYSA 740 (740)
Q Consensus 717 Ie~LIekeyi~r~~~d~~~y~Yia 740 (740)
||+||+||||+|+++|+++|+|+|
T Consensus 736 Ie~LIereYleR~~~~~~~y~YlA 759 (759)
T 2hye_C 736 IESLIDRDYMERDKDNPNQYHYVA 759 (759)
T ss_dssp HHHHHHTTSCBCCSSCTTEEECCC
T ss_pred HHHHHCCCCEECCCCCCCEEEECC
T ss_conf 998741565651799987157449
No 3
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=1.00 E-value=1 Score=634.42 Aligned_cols=357 Identities=29% Similarity=0.473 Sum_probs=325.6
Q ss_pred CCCCHHHHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 64709899999978712689-89999688999999776775033125789999999999786299999959999999999
Q 004648 383 EISSAEILATFCDNLFKNSD-AEKLSDETVERTMDKVIVLLGYFKYKDLFAEFYRKKLARRLLFDKGGNKDYDKTFLSKL 461 (740)
Q Consensus 383 ~~~~~e~La~y~d~~l~~~~-~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~~~~s~~~E~~~i~~L 461 (740)
..++||+||+|||.+||+|. .++.++++++..|++++.||+|+++||+|+.+|+++||+|||.+++.+.+.|+.||++|
T Consensus 3 ~~~~~E~la~y~D~~lkk~~~~k~~~~~e~e~~L~~v~~lf~~l~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~kL 82 (382)
T 3dpl_C 3 ESKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWL 82 (382)
T ss_dssp CCCSHHHHHHHHHHHHBSSHHHHTSCHHHHHHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 87669999999999954888778888999999999999899981878999999999999985789999809999999999
Q ss_pred HHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCC-CCCCCCCHHHHHHHHHHH
Q ss_conf 873189--03786999998799889999999998610899999875478873159999999-999548774899999999
Q 004648 462 KQHSGG--HFTTKMEGMITDVVLARENQTALDDWFSSNLNEKPQFDLSVMVLTTGSWPSYK-FFGLNLPSEMVKGVESFK 538 (740)
Q Consensus 462 k~~~G~--~~~~kl~~M~~D~~~S~~~~~~f~~~~~~~~~~~~~~~~~~~vLt~~~WP~~~-~~~~~lP~~l~~~~~~f~ 538 (740)
| +||. +||++|++||+|+..|++++..|++++...+....+++|+|.|||+++||.++ ..++.+|++|+.+++.|+
T Consensus 83 K-~cG~~~~ft~kle~M~kDi~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~~lP~~l~~~~~~F~ 161 (382)
T 3dpl_C 83 R-EVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVE 161 (382)
T ss_dssp H-HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--CCCGGGEEEEEEEHHHHCCCSCCCCCCCCHHHHTTHHHHH
T ss_pred H-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9-709955589999999999999899999999998615777778853799903886799899888238899999999999
Q ss_pred HHHHHCCCCCEEEECCCCCCEEEEEEECCEEEEEEECHHHHHHHHHHCCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf 89840499831572158661578877658138998619999999735289--9766988999809998999999878220
Q 004648 539 KFYGTKTKARKLTWIYSLGNCHVNGKFELKAIELIVSTYQAACLMLFNDA--DRLSFSEILTQLNLNKGDLIRVLHSLSC 616 (740)
Q Consensus 539 ~~Y~~k~~~R~L~w~~~l~~~~i~~~~~~~~~~l~~s~~Q~~iLl~Fn~~--~~~t~~el~~~t~i~~~~l~~~L~~L~~ 616 (740)
+||..+|+||+|+|.|++|+|++++.++++.+++.||++||+|||+||+. +++|+++|++.||++.++++++|++|++
T Consensus 162 ~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~sL~~ 241 (382)
T 3dpl_C 162 EFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVA 241 (382)
T ss_dssp HHHHTTSSSEEEEECGGGCEEEEEEECSSCEEEEEEEHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHHC
T ss_pred HHHHHCCCCCEEEEECCCCCEEEEEEECCCEEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 99972389988998467555899999679359999729999999972137788573999999979199999999999760
Q ss_pred C---CCCCCCCCCC---CCCCCCCCCEEECCCCCCC-----CCCEECCCCCC------CHHHHHHHHHHHHHHHCHHHHE
Q ss_conf 3---6520002899---8888899916663469888-----76152169985------1045567869964221010310
Q 004648 617 S---KHKILNKEPN---TKTISQSDSFEFNAKFTDR-----MRRIRIPLPPV------DDRREINEDVGKDRRHNIDAAL 679 (740)
Q Consensus 617 ~---k~~iL~~~~~---~~~i~~~~~~~~N~~F~~~-----~~~i~i~~~~~------~e~~~~~~~v~~~R~~~i~A~I 679 (740)
. |++||.+.|. ++++.++|.|.+|.+|++. .++++|+.+.. .+.+++.+.+.+||++.|||||
T Consensus 242 ~~k~k~~iL~~~~~~~~~~~~~~~d~f~~N~~F~~~k~~k~~~r~ki~~~~~~q~~~~~e~~~~~~~v~edR~~~i~AaI 321 (382)
T 3dpl_C 242 FPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQEAI 321 (382)
T ss_dssp CTTCSSCSEEESSCCSSGGGCCTTCEEEECTTCCEESSSSEESEEEEECCTTTTSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEE
T ss_conf 31010454665687666576899988998278757766666314898146654455510123038779987664046877
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEECC
Q ss_conf 1010488888926899999998237899994689999886132101124799999613169
Q 004648 680 VRIMKSRKVLGYQQLISECVEMLSHSFKPEIKAIKSRIDDLINREFIERDSKDPTMFNYSA 740 (740)
Q Consensus 680 VRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIekeyi~r~~~d~~~y~Yia 740 (740)
|||||+||+|+|++|+.+|+++++++|.|++.+||+|||+|||||||+||++|+++|+|+|
T Consensus 322 VRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYleR~~~d~~~y~YlA 382 (382)
T 3dpl_C 322 IQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 382 (382)
T ss_dssp HHHHTTSSEECHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred EHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 3133316756699999999999871589999999999999873203305999987378709
No 4
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=543.35 Aligned_cols=369 Identities=22% Similarity=0.433 Sum_probs=344.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 58889899999999999999851899999995768899999967420578888675308999999999999988731120
Q 004648 6 KLSFEESWALMEQGIAKLKKILKGLPEPPFASEECMTLYTIVYDLCSIELPSAQDCSYSQRLYVKYGEVFEEHMQSDVLP 85 (740)
Q Consensus 6 ~~~f~~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vy~lc~~~~~~~~~~~~~e~LY~~l~~~l~~~l~~~v~~ 85 (740)
+.+|+++|+.|++||+.| +++++. +++ ||++|+.||++|+++ +|++||+++++.+++|+...+.+
T Consensus 27 ~~~~~~~W~~L~~ai~~I---~~~~~~-~~s---~eeLY~~vy~lc~~k--------~g~~LY~~l~~~~~~~l~~~v~~ 91 (410)
T 4ap2_B 27 EKYVNSIWDLLKNAIQEI---QRKNNS-GLS---FEELYRNAYTMVLHK--------HGEKLYTGLREVVTEHLINKVRE 91 (410)
T ss_dssp HHHHHHHHHHHHHHHHHH---HTTCCT-TCC---HHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHCCCC-CCC---HHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 557999999999999999---846898-888---999999999999630--------69999999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q ss_conf 000112056999999999999999999999840444567762079851777899999999999--769999999999999
Q 004648 86 SFEDKRGEFMLREFVKQWENINVMGRWLLRFFEYLDRFYVRSQAGLASLIEVPVVVFRDRVYK--DLKRDVRDTVIALID 163 (740)
Q Consensus 86 ~l~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~~i~~~~l~~f~~~i~~--~l~~~l~~~ll~~I~ 163 (740)
.+....++.+|+.|...|.+|+.++.+|+++|+||||+||. +++.++|+++|+.+||+.||. ++.+++.++++.+|.
T Consensus 92 ~l~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~-~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~lI~ 170 (410)
T 4ap2_B 92 DVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQ-QNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIA 170 (410)
T ss_dssp HHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHH-HTTCCCHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99864857999999999999999998503799986378870-48998799999999999974226789999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99469926989899999999870876513038977999999999999999886762499128999999999999988802
Q 004648 164 EEREGEKIDRALVKKAVDIFVGIGILDMDFYRQDFEEQMIDDAGCYYLRKASSWILNDSCPEYMIKAEECLKKERDRAVY 243 (740)
Q Consensus 164 ~~R~g~~id~~~i~~~i~~~~~l~~~~~~~Y~~~FE~~~l~~t~~yY~~~s~~~l~~~s~~eYl~~v~~~l~eE~~r~~~ 243 (740)
++|+|+.+|+.+++++++||+.+|.+.+.+|.+.||++||++|.+||+.+++.|+++.++++||.+|+.++++|.+||..
T Consensus 171 ~eR~Ge~id~~lik~vi~ml~~Lg~~~~~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R~~~ 250 (410)
T 4ap2_B 171 RERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMH 250 (410)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97499987989999999999981986077778998899999999999999999986098999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 05914299999999999999989999982133478986018464599999952120299177999999999999999998
Q 004648 244 YFHTRSESKLIEKVQHELLVVHRNQLLENEKSGCRALISQEKFDDLSRIFRLYDETRTGLEPVAGIFKQYFIDQGKALVH 323 (740)
Q Consensus 244 ~L~~~t~~kl~~~l~~~LI~~~~~~ll~~~~~~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g~~~~~ 323 (740)
||+++|.+++.++|+++||.+|.+.|++++++||..||++++.++|++||+||+++++|++.++..|++||++.|.+++.
T Consensus 251 yL~~sT~~kL~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~L~~~~~~~I~~~G~~iv~ 330 (410)
T 4ap2_B 251 CLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVS 330 (410)
T ss_dssp TSCGGGHHHHHHHHHHHHTGGGHHHHHTCTTTSHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 55860499999999999999999999871053289998679899999999998651231899999999999999899984
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 5688664213443599999999999999999998608998899999999999961677864709899999978712
Q 004648 324 QAEEDVRNKTANMEQNLVGKILELHDKFMAYVSICFGDHKLFLMALKEAFEVFCNESIVEISSAEILATFCDNLFK 399 (740)
Q Consensus 324 ~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~N~~~~~~~~~e~La~y~d~~l~ 399 (740)
+.... ..+..||+.|++++++|+.++..||++|+.|..++++||+.|+|.+. +.||+||+|||.--.
T Consensus 331 ~~~~~------~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~AF~~fiN~~~---~spElla~y~D~~~~ 397 (410)
T 4ap2_B 331 EEGEG------KNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLNS---RSPEYLAENLYFQSH 397 (410)
T ss_dssp C------------CHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHC-------------------
T ss_pred CCCCC------CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC---CCHHHHHHHCCCCCC
T ss_conf 60034------67589999999999999999999848988999999999999875999---998999898168653
No 5
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=1.00 E-value=1 Score=520.73 Aligned_cols=356 Identities=22% Similarity=0.454 Sum_probs=331.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 77658889899999999999999851899999995768899999967420578888675308999999999999988731
Q 004648 3 SKKKLSFEESWALMEQGIAKLKKILKGLPEPPFASEECMTLYTIVYDLCSIELPSAQDCSYSQRLYVKYGEVFEEHMQSD 82 (740)
Q Consensus 3 ~~~~~~f~~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vy~lc~~~~~~~~~~~~~e~LY~~l~~~l~~~l~~~ 82 (740)
+.++.+|+++|+.|++||+.| +++++. +++ ||++|++||++|+++ +|+.||+++++.+++|+...
T Consensus 7 ~~~~~~~~~~W~~L~~ai~~I---~~~~~~-~~s---~e~LY~~vy~lc~~k--------~g~~LY~~l~~~~~~~l~~~ 71 (364)
T 4eoz_B 7 TMDEKYVNSIWDLLKNAIQEI---QRKNNS-GLS---FEELYRNAYTMVLHK--------HGEKLYTGLREVVTEHLINK 71 (364)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH---HTTCGG-GCC---HHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHH---HHCCCC-CCC---HHHHHHHHHHHHHHH--------CHHHHHHHHHHHHHHHHHHH
T ss_conf 998555998999999999999---854888-898---999999999999641--------79999999999999999999
Q ss_pred CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q ss_conf 120000112056999999999999999999999840444567762079851777899999999999--769999999999
Q 004648 83 VLPSFEDKRGEFMLREFVKQWENINVMGRWLLRFFEYLDRFYVRSQAGLASLIEVPVVVFRDRVYK--DLKRDVRDTVIA 160 (740)
Q Consensus 83 v~~~l~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~~i~~~~l~~f~~~i~~--~l~~~l~~~ll~ 160 (740)
+.+.+....++.+|+.+...|.+|+.++.+|+++|+||||+||. +++.++|+++|+.+||+.+|. ++.+++.++++.
T Consensus 72 v~~~~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~-~~~~~~I~~lgl~~fr~~v~~~~~i~~~l~~~ll~ 150 (364)
T 4eoz_B 72 VREDVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQ-QNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLD 150 (364)
T ss_dssp HHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTG-GGTCCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999864858999999999999999999998999986268870-48999799999999999980570478999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999469926989899999999870876513038977999999999999999886762499128999999999999988
Q 004648 161 LIDEEREGEKIDRALVKKAVDIFVGIGILDMDFYRQDFEEQMIDDAGCYYLRKASSWILNDSCPEYMIKAEECLKKERDR 240 (740)
Q Consensus 161 ~I~~~R~g~~id~~~i~~~i~~~~~l~~~~~~~Y~~~FE~~~l~~t~~yY~~~s~~~l~~~s~~eYl~~v~~~l~eE~~r 240 (740)
+|.++|+|+.+|+.+++++++||+++|.+.+.+|.+.||++||++|.+||+.+++.|+++.++++||++|+.++++|.+|
T Consensus 151 lI~~eR~Ge~id~~lik~~i~ml~~L~~~~~~~Y~~~FE~~fL~~t~~fY~~es~~~l~~~~~~~Yl~~ve~rl~eE~~R 230 (364)
T 4eoz_B 151 MIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIER 230 (364)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 99998089987999999999999981986178878987899999999999999999987198999999999999999999
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 80205914299999999999999989999982133478986018464599999952120299177999999999999999
Q 004648 241 AVYYFHTRSESKLIEKVQHELLVVHRNQLLENEKSGCRALISQEKFDDLSRIFRLYDETRTGLEPVAGIFKQYFIDQGKA 320 (740)
Q Consensus 241 ~~~~L~~~t~~kl~~~l~~~LI~~~~~~ll~~~~~~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g~~ 320 (740)
|..||+++|.+++.++|+++||.+|.+.|++++++||..||++++.++|++||+|++++++|++.++..|++||++.|.+
T Consensus 231 ~~~yL~~~T~~~l~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~ 310 (364)
T 4eoz_B 231 VMHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKA 310 (364)
T ss_dssp HHHHSCGGGHHHHHHHHHHHHTTTTHHHHHTCTTTSHHHHTTTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHTC--
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98757924288999999999999999999860001179988589799999999998414442899999999999999899
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 998568866421344359999999999999999999860899889999999999996167
Q 004648 321 LVHQAEEDVRNKTANMEQNLVGKILELHDKFMAYVSICFGDHKLFLMALKEAFEVFCNES 380 (740)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~N~~ 380 (740)
++.+.... ..|..||+.|+++|++|+.++..||++|+.|..++++||+.|+|.+
T Consensus 311 iv~~~~~~------~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~n 364 (364)
T 4eoz_B 311 LVSEEGEG------KNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLN 364 (364)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHCCCCC------CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 97370044------7758999999999999999999980898999999999999960494
No 6
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=1.00 E-value=1 Score=506.20 Aligned_cols=359 Identities=21% Similarity=0.392 Sum_probs=326.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 77658889899999999999999851899999995768899999967420578888675308999999999999988731
Q 004648 3 SKKKLSFEESWALMEQGIAKLKKILKGLPEPPFASEECMTLYTIVYDLCSIELPSAQDCSYSQRLYVKYGEVFEEHMQSD 82 (740)
Q Consensus 3 ~~~~~~f~~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vy~lc~~~~~~~~~~~~~e~LY~~l~~~l~~~l~~~ 82 (740)
..++.+|+++|+.|++||++|.. + .+++..+||++|++||++|+++. .+|+.||+++++.++.|+...
T Consensus 9 ~~~~~~~e~~W~~L~~ai~~I~~---~---~~~~~~s~e~LY~~vy~lc~~~~------~~~~~LY~~l~~~~~~~l~~~ 76 (391)
T 2wzk_A 9 NKGSLQFEDKWDFMHPIVLKLLR---Q---ESVTKQQWFDLFSDVHAVCLWDD------KGSSKIHQALKEDILEFIKQA 76 (391)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHH---T---CCCCHHHHHHHHHHHHHHHHHCT------THHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH---C---CCCCHHHHHHHHHHHHHHHHCCC------CCHHHHHHHHHHHHHHHHHHH
T ss_conf 87635699899999999999986---7---99986789999999999992675------244999999999999999999
Q ss_pred CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCC-------CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 12000011205699999999999999999999984044456776207-------98517778999999999997699999
Q 004648 83 VLPSFEDKRGEFMLREFVKQWENINVMGRWLLRFFEYLDRFYVRSQA-------GLASLIEVPVVVFRDRVYKDLKRDVR 155 (740)
Q Consensus 83 v~~~l~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~-------~~~~i~~~~l~~f~~~i~~~l~~~l~ 155 (740)
+.+......++.+|..|...|.+|+.++.+|+++|+||||+||...+ +.++|+++|+.+||+.||.++.+++.
T Consensus 77 ~~~~~~~~~~e~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~~~~~~~~I~~lgL~~fr~~v~~~i~~~l~ 156 (391)
T 2wzk_A 77 QARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEVTLLGKQSSNKKSNMEDSIVRKLMLDTWNESIFSNIKNRLQ 156 (391)
T ss_dssp HHHHHTCCSHHHHHHHHHHHHHHHHHHTTTTTGGGHHHHTTSTTC--------CTTCHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998516777999999999999999999989999998789873144112357888869999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC---CHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9999999999469926989899999999870876---5130389779999999999999998867624991289999999
Q 004648 156 DTVIALIDEEREGEKIDRALVKKAVDIFVGIGIL---DMDFYRQDFEEQMIDDAGCYYLRKASSWILNDSCPEYMIKAEE 232 (740)
Q Consensus 156 ~~ll~~I~~~R~g~~id~~~i~~~i~~~~~l~~~---~~~~Y~~~FE~~~l~~t~~yY~~~s~~~l~~~s~~eYl~~v~~ 232 (740)
++++.+|.++|+|+.+|+.+++++++||+.+|.+ .+.+|.+.||++||++|.+||+.+++.|+++.++++||++|+.
T Consensus 157 ~~ll~lI~~eR~Ge~id~~llk~vi~~l~~L~~~~~~~l~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~ 236 (391)
T 2wzk_A 157 DSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADA 236 (391)
T ss_dssp HHHHHHHHHHHTTCCCCTHHHHHHHHHHHHSCCCSSCTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99999999974899877999999999999974686555778679989999999999999999999984999999999999
Q ss_pred HHHHHHHHHCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 99999988802059----14299999999999999989999982133478986018464599999952120299177999
Q 004648 233 CLKKERDRAVYYFH----TRSESKLIEKVQHELLVVHRNQLLENEKSGCRALISQEKFDDLSRIFRLYDETRTGLEPVAG 308 (740)
Q Consensus 233 ~l~eE~~r~~~~L~----~~t~~kl~~~l~~~LI~~~~~~ll~~~~~~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~ 308 (740)
++++|.+||..||+ ++|.+++.++|+++||.+|.+.|++ |+..||++++.+||++||+||+++++|++.++.
T Consensus 237 rL~eE~~R~~~yL~~~~~~sT~~kl~~~~e~~LI~~h~~~ll~----~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~ 312 (391)
T 2wzk_A 237 KLKEEEKRALRYLETRRECNSVEALMECCVNALVTSFKETILA----ECQGMIKRNETEKLHLMFSLMDKVPNGIEPMLK 312 (391)
T ss_dssp HHHHHHHHHHHHSCCTTCCSHHHHHHHHHHHHHTGGGHHHHHT----THHHHHHTTCHHHHHHHHHHHTTSTTCSHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 9999999999873876774359999999999999999999999----899998758799999999987637452899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999999985688664213443599999999999999999998608998899999999999961677
Q 004648 309 IFKQYFIDQGKALVHQAEEDVRNKTANMEQNLVGKILELHDKFMAYVSICFGDHKLFLMALKEAFEVFCNESI 381 (740)
Q Consensus 309 ~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~N~~~ 381 (740)
.|++||++.|.+++....+. ....|..||+.|+++|++|+.++..||.+|+.|..++++||+.|+|.+.
T Consensus 313 ~~~~~I~~~G~~~v~~~~~~----~~~~~~~~V~~LL~l~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~ 381 (391)
T 2wzk_A 313 DLEEHIISAGLADMVAAAET----ITTDSEKYREQLDTLFNRFSKLVKEAFQDDPRFLTARDKAYKAVVNDAT 381 (391)
T ss_dssp HHHHHHHHHHHHHHHHHGGG----TTTCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCH
T ss_conf 99999999979999701012----4478799999999999999999999829988999999999999968766
No 7
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=1.00 E-value=1 Score=496.90 Aligned_cols=347 Identities=24% Similarity=0.494 Sum_probs=318.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 77658889899999999999999851899999995768899999967420578888675308999999999999988731
Q 004648 3 SKKKLSFEESWALMEQGIAKLKKILKGLPEPPFASEECMTLYTIVYDLCSIELPSAQDCSYSQRLYVKYGEVFEEHMQSD 82 (740)
Q Consensus 3 ~~~~~~f~~~W~~l~~ai~~i~~~l~~~~~~~~s~~~y~~lY~~vy~lc~~~~~~~~~~~~~e~LY~~l~~~l~~~l~~~ 82 (740)
.-++.+||++|+.|++||+.| +++++. +++ ||++|+.||++|+++ +|++||+++++.++.|+...
T Consensus 4 ~~~~~~~~~~W~~L~~ai~~I---~~~~~~-~~s---~eeLY~~vy~lc~~~--------~g~~LY~~l~~~~~~~l~~~ 68 (354)
T 4a64_A 4 KLPENYTDETWQKLKEAVEAI---QNSTSI-KYN---LEELYQAVENLCSYK--------ISANLYKQLRQICEDHIKAQ 68 (354)
T ss_dssp CCCSSSTTHHHHHHHHHHHHH---HTTCCC-CSC---HHHHHHHHHHHHHHS--------CHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHH---HHCCCC-CCC---HHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHHHH
T ss_conf 998788997999999999999---847999-999---999999999999668--------68999999999999999999
Q ss_pred CCCHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q ss_conf 12000011-2056999999999999999999999840444567762079851777899999999999--76999999999
Q 004648 83 VLPSFEDK-RGEFMLREFVKQWENINVMGRWLLRFFEYLDRFYVRSQAGLASLIEVPVVVFRDRVYK--DLKRDVRDTVI 159 (740)
Q Consensus 83 v~~~l~~~-~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~~i~~~~l~~f~~~i~~--~l~~~l~~~ll 159 (740)
+.+..... .++.+|+.+...|.+|+.++.+|+++|+||||+||..+++.++|+++|+.+|++.+|. ++.+++.++++
T Consensus 69 ~~~~~~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~ll 148 (354)
T 4a64_A 69 IHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGIL 148 (354)
T ss_dssp TGGGGCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHCSTTTSCCSCCHHHHHHHHHHHHTTTSHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99998703667999999999999999999998899986223567148999979999999999997255778999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999946992698989999999987087651303897799999999999999988676249912899999999999998
Q 004648 160 ALIDEEREGEKIDRALVKKAVDIFVGIGILDMDFYRQDFEEQMIDDAGCYYLRKASSWILNDSCPEYMIKAEECLKKERD 239 (740)
Q Consensus 160 ~~I~~~R~g~~id~~~i~~~i~~~~~l~~~~~~~Y~~~FE~~~l~~t~~yY~~~s~~~l~~~s~~eYl~~v~~~l~eE~~ 239 (740)
.+|.++|+|+.+|+.+++++++|+.++ .+|.+.||++||++|.+||+.+++.|+++.++++||.+|+.++++|.+
T Consensus 149 ~lI~~eR~Ge~id~~lik~~i~ml~~L-----~vY~~~FE~~fL~~t~~fY~~e~~~~l~~~~~~~Yl~~ve~rl~eE~~ 223 (354)
T 4a64_A 149 LLIERERNGEAIDRSLLRSLLSMLSDL-----QIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEAD 223 (354)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHT-----TCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 999998289977799999999988455-----234799999999999999999999988719899999999999999999
Q ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 88020591429999999999999998999998213347898601846459999995212029917799999999999999
Q 004648 240 RAVYYFHTRSESKLIEKVQHELLVVHRNQLLENEKSGCRALISQEKFDDLSRIFRLYDETRTGLEPVAGIFKQYFIDQGK 319 (740)
Q Consensus 240 r~~~~L~~~t~~kl~~~l~~~LI~~~~~~ll~~~~~~~~~ll~~~~~~~L~~ly~L~~~~~~~l~~l~~~~~~~i~~~g~ 319 (740)
||..||+++|.+++.++|+++||.+|.+.|+. +|+..||++++.++|++||+|++++++|++.++..|++||++.|.
T Consensus 224 R~~~yL~~~T~~~l~~~~e~~LI~~h~~~ll~---~~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~ 300 (354)
T 4a64_A 224 RLITYLDQTTQKSLIATVEKQLLGEHLTAILQ---KGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGS 300 (354)
T ss_dssp HHHHTSCGGGHHHHHHHHHHHHTGGGHHHHHH---HHHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99986786048999999999999999999999---879999877878899999999740666289999999999999989
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 99985688664213443599999999999999999998608998899999999999961677
Q 004648 320 ALVHQAEEDVRNKTANMEQNLVGKILELHDKFMAYVSICFGDHKLFLMALKEAFEVFCNESI 381 (740)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~N~~~ 381 (740)
+++.+.. .+..||+.|+++|++|+.++..||++|+.|..++++||+.|+|.+.
T Consensus 301 ~iv~~~~---------~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~~~ 353 (354)
T 4a64_A 301 TIVINPE---------KDKTMRQELDDFKDKVDHIIDICFLKNEKFINAMKEAFETFINKRP 353 (354)
T ss_dssp HHHHSCC---------SSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC-----
T ss_pred HHHCCCC---------CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 9881963---------4679999999999999999998869989999999999999828999
No 8
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=1.00 E-value=1 Score=176.50 Aligned_cols=83 Identities=41% Similarity=0.697 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHHHHHHCHHHHEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCE
Q ss_conf 10455678699642210103101010488888926899999998237899994689999886132101124799999613
Q 004648 658 DDRREINEDVGKDRRHNIDAALVRIMKSRKVLGYQQLISECVEMLSHSFKPEIKAIKSRIDDLINREFIERDSKDPTMFN 737 (740)
Q Consensus 658 ~e~~~~~~~v~~~R~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIekeyi~r~~~d~~~y~ 737 (740)
.|..++.+.+.+||.+.||||||||||+||+|+|++|+.+|.++++++|.|++.+||++||+||+||||+|+++|+++|+
T Consensus 10 ~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR~~~d~~~y~ 89 (92)
T 1iuy_A 10 PERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYT 89 (92)
T ss_dssp CCCCCCCSCSCCCTTTHHHHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECSSCSSEEE
T ss_pred HHHHHHHHHHHHHHHHHEEEEEEEHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 89999999999987877314554054302305499999999999707789998999999998865536625899987267
Q ss_pred ECC
Q ss_conf 169
Q 004648 738 YSA 740 (740)
Q Consensus 738 Yia 740 (740)
|+|
T Consensus 90 Y~A 92 (92)
T 1iuy_A 90 YVA 92 (92)
T ss_dssp EC-
T ss_pred ECC
T ss_conf 529
No 9
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=1.00 E-value=1 Score=175.12 Aligned_cols=82 Identities=26% Similarity=0.574 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHHHHHHCHHHHEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCE
Q ss_conf 10455678699642210103101010488888926899999998237899994689999886132101124799999613
Q 004648 658 DDRREINEDVGKDRRHNIDAALVRIMKSRKVLGYQQLISECVEMLSHSFKPEIKAIKSRIDDLINREFIERDSKDPTMFN 737 (740)
Q Consensus 658 ~e~~~~~~~v~~~R~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIekeyi~r~~~d~~~y~ 737 (740)
.|..++.+.+.++|.+.||||||||||+||+|+|++|+.+|+++++++|+|++.+||+|||+||+||||+|+++| ++|+
T Consensus 7 ~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~-~~y~ 85 (88)
T 3o2p_E 7 TEDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDG-ESYA 85 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTS-SEEE
T ss_pred CHHHHHHHHHHHHHHHHHHEEEEHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CEEE
T ss_conf 528889999999766660023422211555144999999999998665899999999999999853577428999-8677
Q ss_pred ECC
Q ss_conf 169
Q 004648 738 YSA 740 (740)
Q Consensus 738 Yia 740 (740)
|+|
T Consensus 86 YlA 88 (88)
T 3o2p_E 86 YLA 88 (88)
T ss_dssp ECC
T ss_pred EEC
T ss_conf 519
No 10
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=174.75 Aligned_cols=81 Identities=42% Similarity=0.679 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHHHHHCHHHHEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCE
Q ss_conf 10455678699642210103101010488888926899999998237899994689999886132101124799999613
Q 004648 658 DDRREINEDVGKDRRHNIDAALVRIMKSRKVLGYQQLISECVEMLSHSFKPEIKAIKSRIDDLINREFIERDSKDPTMFN 737 (740)
Q Consensus 658 ~e~~~~~~~v~~~R~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~LIekeyi~r~~~d~~~y~ 737 (740)
+|...+.+.+.+||.+.||||||||||+||+|+|++|+.+|.++++ |.|++.+||++||.||+||||+|+++|+++|+
T Consensus 15 ~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~eV~~ql~--F~p~~~~IKk~IE~LIereYleR~~~d~~~y~ 92 (101)
T 2do7_A 15 EEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLK--FPVKPADLKKRIESLIDRDYMERDKENPNQYN 92 (101)
T ss_dssp CCCSSCCSHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHCS--SCCCHHHHHHHHHHHHHTTSEEECSSCTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 8899999999999999999999999722020559999999999837--99998999999999865657744899988388
Q ss_pred ECC
Q ss_conf 169
Q 004648 738 YSA 740 (740)
Q Consensus 738 Yia 740 (740)
|+|
T Consensus 93 YlA 95 (101)
T 2do7_A 93 YIA 95 (101)
T ss_dssp ECC
T ss_pred EEC
T ss_conf 865
Done!