BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004649
(740 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 608 bits (1568), Expect = e-174, Method: Compositional matrix adjust.
Identities = 320/688 (46%), Positives = 448/688 (65%), Gaps = 32/688 (4%)
Query: 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITI 128
++RLRNIGI+AHID+GKTT TERIL+YTGRIH+I EV +G A MD M+ ERE+GITI
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH--EG-AATMDFMEQERERGITI 65
Query: 129 QSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM 188
+A T+C WKD++INIIDTPGHVDFT+EVER++RVLDGAI+V S GV+ QS TV RQ
Sbjct: 66 TAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA 125
Query: 189 RRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTA 248
+Y+VPR+AF NK+D+ GAD W V+ + +L +Q+P+G ED F G++D++++ A
Sbjct: 126 EKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKA 185
Query: 249 YYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEA 308
Y + G I +P + E +L+E+ ++ D+ + +L E + +L A
Sbjct: 186 YTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAA 245
Query: 309 IRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVI-LSG 367
IR+ T+ K PVF+GSA KNKGVQ LLD V+ YLP P ++ + E +V+ +
Sbjct: 246 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIP--PIKGTTPEGEVVEIHP 303
Query: 368 NPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEM 426
+P+GPL ALAFK+ + G+LT++R+Y G + G ++ N G+K +V RL+RMH+N
Sbjct: 304 DPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHR 363
Query: 427 EDIQEAHAGQIVAVFGVDCA-----------------------SVMSLAVQPVSKDSGGQ 463
E+++E AG + AV G+ V+ +A++P +K +
Sbjct: 364 EEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEK 423
Query: 464 FSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 523
S+AL R +EDPTFRV E+GQTIISGMGELHL+I V+R++RE+KVDA VGKP+V +
Sbjct: 424 LSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAY 483
Query: 524 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPA 583
RE +TK + + +Q+GG+GQYG V +EPLP GS FEF N +VG IP +IPA
Sbjct: 484 RETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGS--GFEFVNAIVGGVIPKEYIPA 541
Query: 584 IEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVI 643
++KG +EA SG LIG PV ++V L DG+ H VDSSE+AFK+A A ++ PVI
Sbjct: 542 VQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVI 601
Query: 644 LEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRS 703
LEP+M VE+ P E+ G V GD+N R+G I+G + G+ VI A VPL MFGY+T LRS
Sbjct: 602 LEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRS 661
Query: 704 MTQGKGEFTMEYKEHAPVSQDVQLQLVK 731
TQG+G F M + + V + VQ +L+K
Sbjct: 662 KTQGRGSFVMFFDHYQEVPKQVQEKLIK 689
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 608 bits (1568), Expect = e-174, Method: Compositional matrix adjust.
Identities = 320/688 (46%), Positives = 448/688 (65%), Gaps = 32/688 (4%)
Query: 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITI 128
++RLRNIGI+AHID+GKTT TERIL+YTGRIH+I EV +G A MD M+ ERE+GITI
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH--EG-AATMDFMEQERERGITI 65
Query: 129 QSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM 188
+A T+C WKD++INIIDTPGHVDFT+EVER++RVLDGAI+V S GV+ QS TV RQ
Sbjct: 66 TAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA 125
Query: 189 RRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTA 248
+Y+VPR+AF NK+D+ GAD W V+ + +L +Q+P+G ED F G++D++++ A
Sbjct: 126 EKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKA 185
Query: 249 YYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEA 308
Y + G I +P + E +L+E+ ++ D+ + +L E + +L A
Sbjct: 186 YTYGNDLGTDIREIPIPEEYLDNAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAA 245
Query: 309 IRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVI-LSG 367
IR+ T+ K PVF+GSA KNKGVQ LLD V+ YLP P ++ + E +V+ +
Sbjct: 246 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIP--PIKGTTPEGEVVEIHP 303
Query: 368 NPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEM 426
+P+GPL ALAFK+ + G+LT++R+Y G + G ++ N G+K +V RL+RMH+N
Sbjct: 304 DPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHR 363
Query: 427 EDIQEAHAGQIVAVFGVDCA-----------------------SVMSLAVQPVSKDSGGQ 463
E+++E AG + AV G+ V+ +A++P +K +
Sbjct: 364 EEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEK 423
Query: 464 FSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 523
S+AL R +EDPTFRV E+GQTIISGMGELHL+I V+R++RE+KVDA VGKP+V +
Sbjct: 424 LSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAY 483
Query: 524 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPA 583
RE +TK + + +Q+GG+GQYG V +EPLP GS FEF N +VG IP +IPA
Sbjct: 484 RETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGS--GFEFVNAIVGGVIPKEYIPA 541
Query: 584 IEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVI 643
++KG +EA SG LIG PV ++V L DG+ H VDSSE+AFK+A A ++ PVI
Sbjct: 542 VQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVI 601
Query: 644 LEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRS 703
LEP+M VE+ P E+ G V GD+N R+G I+G + G+ VI A VPL MFGY+T LRS
Sbjct: 602 LEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRS 661
Query: 704 MTQGKGEFTMEYKEHAPVSQDVQLQLVK 731
TQG+G F M + + V + VQ +L+K
Sbjct: 662 KTQGRGSFVMFFDHYQEVPKQVQEKLIK 689
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 607 bits (1565), Expect = e-174, Method: Compositional matrix adjust.
Identities = 319/688 (46%), Positives = 447/688 (64%), Gaps = 32/688 (4%)
Query: 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITI 128
++RLRNIGI+AHID+GKTT TERIL+YTGRIH+I EV +G A MD M+ ERE+GITI
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIAEVH--EG-AATMDFMEQERERGITI 65
Query: 129 QSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM 188
+A T+C WKD++INIID PGHVDFT+EVER++RVLDGAI+V S GV+ QS TV RQ
Sbjct: 66 TAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA 125
Query: 189 RRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTA 248
+Y+VPR+AF NK+D+ GAD W V+ + +L +Q+P+G ED F G++D++++ A
Sbjct: 126 EKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKA 185
Query: 249 YYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEA 308
Y + G I +P + E +L+E+ ++ D+ + +L E + +L A
Sbjct: 186 YTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAA 245
Query: 309 IRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVI-LSG 367
IR+ T+ K PVF+GSA KNKGVQ LLD V+ YLP P ++ + E +V+ +
Sbjct: 246 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIP--PIKGTTPEGEVVEIHP 303
Query: 368 NPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEM 426
+P+GPL ALAFK+ + G+LT++R+Y G + G ++ N G+K +V RL+RMH+N
Sbjct: 304 DPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHR 363
Query: 427 EDIQEAHAGQIVAVFGVDCA-----------------------SVMSLAVQPVSKDSGGQ 463
E+++E AG + AV G+ V+ +A++P +K +
Sbjct: 364 EEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEK 423
Query: 464 FSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 523
S+AL R +EDPTFRV E+GQTIISGMGELHL+I V+R++RE+KVDA VGKP+V +
Sbjct: 424 LSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAY 483
Query: 524 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPA 583
RE +TK + + +Q+GG+GQYG V +EPLP GS FEF N +VG IP +IPA
Sbjct: 484 RETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGS--GFEFVNAIVGGVIPKEYIPA 541
Query: 584 IEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVI 643
++KG +EA SG LIG PV ++V L DG+ H VDSSE+AFK+A A ++ PVI
Sbjct: 542 VQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVI 601
Query: 644 LEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRS 703
LEP+M VE+ P E+ G V GD+N R+G I+G + G+ VI A VPL MFGY+T LRS
Sbjct: 602 LEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRS 661
Query: 704 MTQGKGEFTMEYKEHAPVSQDVQLQLVK 731
TQG+G F M + + V + VQ +L+K
Sbjct: 662 KTQGRGSFVMFFDHYQEVPKQVQEKLIK 689
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 606 bits (1563), Expect = e-173, Method: Compositional matrix adjust.
Identities = 319/688 (46%), Positives = 447/688 (64%), Gaps = 32/688 (4%)
Query: 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITI 128
++RLRNIGI+AHID+GKTT TERIL+YTGRIH+I EV +G A MD M+ ERE+GITI
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH--EG-AATMDFMEQERERGITI 65
Query: 129 QSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM 188
+A T+C WKD++INIID PGHVDFT+EVER++RVLDGAI+V S GV+ QS TV RQ
Sbjct: 66 TAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA 125
Query: 189 RRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTA 248
+Y+VPR+AF NK+D+ GAD W V+ + +L +Q+P+G ED F G++D++++ A
Sbjct: 126 EKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKA 185
Query: 249 YYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEA 308
Y + G I +P + E +L+E+ ++ D+ + +L E + +L A
Sbjct: 186 YTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAA 245
Query: 309 IRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVI-LSG 367
IR+ T+ K PVF+GSA KNKGVQ LLD V+ YLP P ++ + E +V+ +
Sbjct: 246 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIP--PIKGTTPEGEVVEIHP 303
Query: 368 NPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEM 426
+P+GPL ALAFK+ + G+LT++R+Y G + G ++ N G+K +V RL+RMH+N
Sbjct: 304 DPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHR 363
Query: 427 EDIQEAHAGQIVAVFGVD-----------------------CASVMSLAVQPVSKDSGGQ 463
E+++E AG + AV G+ V+ +A++P +K +
Sbjct: 364 EEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEK 423
Query: 464 FSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 523
S+AL R +EDPTFRV E+GQTIISGMGELHL+I V+R++RE+KVDA VGKP+V +
Sbjct: 424 LSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAY 483
Query: 524 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPA 583
RE +TK + + +Q+GG+GQYG V +EPLP GS FEF N +VG IP +IPA
Sbjct: 484 RETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGS--GFEFVNAIVGGVIPKEYIPA 541
Query: 584 IEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVI 643
++KG +EA SG LIG PV ++V L DG+ H VDSSE+AFK+A A ++ PVI
Sbjct: 542 VQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVI 601
Query: 644 LEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRS 703
LEP+M VE+ P E+ G V GD+N R+G I+G + G+ VI A VPL MFGY+T LRS
Sbjct: 602 LEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRS 661
Query: 704 MTQGKGEFTMEYKEHAPVSQDVQLQLVK 731
TQG+G F M + + V + VQ +L+K
Sbjct: 662 KTQGRGSFVMFFDHYQEVPKQVQEKLIK 689
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 605 bits (1561), Expect = e-173, Method: Compositional matrix adjust.
Identities = 319/688 (46%), Positives = 447/688 (64%), Gaps = 32/688 (4%)
Query: 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITI 128
++RLRNI I+AHID+GKTT TERIL+YTGRIH+I EV +G A MD M+ ERE+GITI
Sbjct: 9 LKRLRNIVIAAHIDAGKTTTTERILYYTGRIHKIGEVH--EG-AATMDFMEQERERGITI 65
Query: 129 QSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM 188
+A T+C WKD++INIIDTPGHVDFT+EVER++RVLDGAI+V S GV+ QS TV RQ
Sbjct: 66 TAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA 125
Query: 189 RRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTA 248
+Y+VPR+AF NK+D+ GAD W V+ + +L +Q+P+G ED F G++D++++ A
Sbjct: 126 EKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKA 185
Query: 249 YYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEA 308
Y + G I +P + E +L+E+ ++ D+ + +L E + +L A
Sbjct: 186 YTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAA 245
Query: 309 IRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVI-LSG 367
IR+ T+ K PVF+GSA KNKGVQ LLD V+ YLP P ++ + E +V+ +
Sbjct: 246 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIP--PIKGTTPEGEVVEIHP 303
Query: 368 NPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEM 426
+P+GPL ALAFK+ + G+LT++R+Y G + G ++ N G+K +V RL+RMH+N
Sbjct: 304 DPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHR 363
Query: 427 EDIQEAHAGQIVAVFGVDCA-----------------------SVMSLAVQPVSKDSGGQ 463
E+++E AG + AV G+ V+ +A++P +K +
Sbjct: 364 EEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEK 423
Query: 464 FSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 523
S+AL R +EDPTFRV E+GQTIISGMGELHL+I V+R++RE+KVDA VGKP+V +
Sbjct: 424 LSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAY 483
Query: 524 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPA 583
RE +TK + + +Q+GG+GQYG V +EPLP GS FEF N +VG IP +IPA
Sbjct: 484 RETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGS--GFEFVNAIVGGVIPKEYIPA 541
Query: 584 IEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVI 643
++KG +EA SG LIG PV ++V L DG+ H VDSSE+AFK+A A ++ PVI
Sbjct: 542 VQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVI 601
Query: 644 LEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRS 703
LEP+M VE+ P E+ G V GD+N R+G I+G + G+ VI A VPL MFGY+T LRS
Sbjct: 602 LEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRS 661
Query: 704 MTQGKGEFTMEYKEHAPVSQDVQLQLVK 731
TQG+G F M + + V + VQ +L+K
Sbjct: 662 KTQGRGSFVMFFDHYQEVPKQVQEKLIK 689
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 605 bits (1559), Expect = e-173, Method: Compositional matrix adjust.
Identities = 319/688 (46%), Positives = 447/688 (64%), Gaps = 32/688 (4%)
Query: 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITI 128
++RLRNIGI+AHID+GKTT TERIL+YTGRIH+I EV +G A MD M+ ERE+GITI
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH--EG-AATMDFMEQERERGITI 65
Query: 129 QSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM 188
+A T+C WKD++INIIDTPGHVDFT+EVER++RVLDGAI+V S GV+ QS TV RQ
Sbjct: 66 TAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA 125
Query: 189 RRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTA 248
+Y+VPR+AF NK+D+ GAD W V+ + +L +Q+P+G ED F G++D++++ A
Sbjct: 126 EKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKA 185
Query: 249 YYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEA 308
Y + G I +P + E +L+E+ ++ D+ + +L E + +L A
Sbjct: 186 YTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAA 245
Query: 309 IRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVI-LSG 367
IR+ T+ K PVF+GSA KNKGVQ LLD V+ YLP P ++ + E +V+ +
Sbjct: 246 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIP--PIKGTTPEGEVVEIHP 303
Query: 368 NPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEM 426
+P+GPL ALAFK+ + G+LT++R+Y G + G ++ N G+K +V RL+RMH+N
Sbjct: 304 DPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHR 363
Query: 427 EDIQEAHAGQIVAVFGVDCA-----------------------SVMSLAVQPVSKDSGGQ 463
E+++E AG + AV G+ V+ +A++P +K +
Sbjct: 364 EEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEK 423
Query: 464 FSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 523
S+AL R +EDPTFRV E+GQTIISGMGELHL+I V+R++RE+KVDA VGKP+V +
Sbjct: 424 LSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAY 483
Query: 524 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPA 583
RE +TK + + +Q+GG+GQYG V +EPLP GS FEF N +VG IP +IPA
Sbjct: 484 RETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGS--GFEFVNAIVGGVIPKEYIPA 541
Query: 584 IEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVI 643
++KG +EA SG LIG PV ++V L DG+ VDSSE+AFK+A A ++ PVI
Sbjct: 542 VQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYAEVDSSEMAFKIAGSMAIKEAVQKGDPVI 601
Query: 644 LEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRS 703
LEP+M VE+ P E+ G V GD+N R+G I+G + G+ VI A VPL MFGY+T LRS
Sbjct: 602 LEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRS 661
Query: 704 MTQGKGEFTMEYKEHAPVSQDVQLQLVK 731
TQG+G F M + + V + VQ +L+K
Sbjct: 662 KTQGRGSFVMFFDHYQEVPKQVQEKLIK 689
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 603 bits (1556), Expect = e-173, Method: Compositional matrix adjust.
Identities = 318/687 (46%), Positives = 446/687 (64%), Gaps = 32/687 (4%)
Query: 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITI 128
++RLRNIGI+AHID+GKTT TERIL+YTGRIH+I EV +G A MD M+ ERE+GITI
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH--EG-AATMDFMEQERERGITI 65
Query: 129 QSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM 188
+A T+C WKD++INIIDTPGHVDFT+EVER++RVLDGAI+V S GV+ QS TV RQ
Sbjct: 66 TAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA 125
Query: 189 RRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTA 248
+Y+VPR+AF NK+D+ GAD W V+ + +L +Q+P+G ED F G++D++++ A
Sbjct: 126 EKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKA 185
Query: 249 YYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEA 308
Y + G I +P + E +L+E+ ++ D+ + +L E + +L A
Sbjct: 186 YTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAA 245
Query: 309 IRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVI-LSG 367
IR+ T+ K PVF+GSA KNKGVQ LLD V+ YLP P ++ + E +V+ +
Sbjct: 246 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIP--PIKGTTPEGEVVEIHP 303
Query: 368 NPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEM 426
+P+GPL ALAFK+ + G+LT++R+Y G + G ++ N G+K +V RL+RMH+N
Sbjct: 304 DPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHR 363
Query: 427 EDIQEAHAGQIVAVFGVDCA-----------------------SVMSLAVQPVSKDSGGQ 463
E+++E AG + AV G+ V+ +A++P +K +
Sbjct: 364 EEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEK 423
Query: 464 FSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 523
S+AL R +EDPTFRV E+GQTIISGMGELHL+I V+R++RE+KVDA VGKP+V +
Sbjct: 424 LSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAY 483
Query: 524 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPA 583
RE +TK + + +Q+GG+GQYG V +EPLP GS FEF N +VG IP +IPA
Sbjct: 484 RETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGS--GFEFVNAIVGGVIPKEYIPA 541
Query: 584 IEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVI 643
++KG +EA SG LIG PV ++V L DG+ VDSSE+AFK+A A ++ PVI
Sbjct: 542 VQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYAEVDSSEMAFKIAGSMAIKEAVQKGDPVI 601
Query: 644 LEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRS 703
LEP+M VE+ P E+ G V GD+N R+G I+G + G+ VI A VPL MFGY+T LRS
Sbjct: 602 LEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRS 661
Query: 704 MTQGKGEFTMEYKEHAPVSQDVQLQLV 730
TQG+G F M + + V + VQ +L+
Sbjct: 662 KTQGRGSFVMFFDHYQEVPKQVQEKLI 688
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 597 bits (1538), Expect = e-170, Method: Compositional matrix adjust.
Identities = 315/688 (45%), Positives = 443/688 (64%), Gaps = 32/688 (4%)
Query: 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITI 128
++RLRNIGI+AHID+GKTT TERIL+YTGRIH+I EV +G A MD M+ ERE+GITI
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH--EG-AATMDFMEQERERGITI 65
Query: 129 QSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM 188
+A T+C WKD++INIID PGHVDFT+EVER++RVLDGAI+V S GV+ QS TV RQ
Sbjct: 66 TAAVTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA 125
Query: 189 RRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTA 248
+Y+VPR+AF NK+D+ GAD W V+ + +L +Q+P+G ED F G++D++++ A
Sbjct: 126 EKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKA 185
Query: 249 YYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEA 308
Y + G I +P + E +L+E+ ++ D+ + +L E + +L A
Sbjct: 186 YTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAA 245
Query: 309 IRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVI-LSG 367
IR+ T+ K PVF+GSA KNKGVQ LLD V+ YLP P ++ + E +V+ +
Sbjct: 246 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIP--PIKGTTPEGEVVEIHP 303
Query: 368 NPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEM 426
+P+GPL ALAFK+ + G+LT++R+Y G + G ++ N G+K +V RL+RMH+N
Sbjct: 304 DPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHR 363
Query: 427 EDIQEAHAGQIVAVFGVD-----------------------CASVMSLAVQPVSKDSGGQ 463
E+++E AG + AV G+ V+ +A++P +K +
Sbjct: 364 EEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEK 423
Query: 464 FSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 523
S+AL R +E PTF V E+G TIISGMGEL L+I V+R++RE+KVDA VGKP+V +
Sbjct: 424 LSQALARLAEESPTFSVSTHPETGSTIISGMGELSLEIIVDRLKREFKVDANVGKPQVAY 483
Query: 524 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPA 583
RE +TK + + +Q+GG+GQYG V +EPLP GS FEF N +VG IP +IPA
Sbjct: 484 RETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGS--GFEFVNAIVGGVIPKEYIPA 541
Query: 584 IEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVI 643
++KG +EA SG LIG PV ++V L DG+ H VDSSE+AFK+A A ++ PVI
Sbjct: 542 VQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVI 601
Query: 644 LEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRS 703
LEP+M VE+ P E+ G V GD+N R+G I+G + G+ VI A VPL MFGY+T LRS
Sbjct: 602 LEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRS 661
Query: 704 MTQGKGEFTMEYKEHAPVSQDVQLQLVK 731
TQG+G F M + + V + VQ +L+K
Sbjct: 662 KTQGRGSFVMFFDHYQEVPKQVQEKLIK 689
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 570 bits (1470), Expect = e-163, Method: Compositional matrix adjust.
Identities = 313/696 (44%), Positives = 447/696 (64%), Gaps = 39/696 (5%)
Query: 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQS 130
R RNIGISAHID+GKTT TERILFYTG H+I EV DG A MD M+ E+E+GITI S
Sbjct: 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVH--DG-AATMDWMEQEQERGITITS 65
Query: 131 AATSCAW----KDYQ---INIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT 183
AAT+ W K Y+ INIIDTPGHVDFT+EVER++RVLDGA++V C+VGGVQ QS T
Sbjct: 66 AATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET 125
Query: 184 VDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDL 243
V RQ +Y+VPR+AF+NK+DRMGA+ KV++Q +++L + +Q+ +G E+ F G+VDL
Sbjct: 126 VWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDL 185
Query: 244 VQLTAYYFHGSN-GEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISS 302
V++ A ++ ++ G ++PADM E + LIE +E ++L + +L E ++
Sbjct: 186 VKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTE 245
Query: 303 GDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVS--NYALDQKNNE 360
+++ A+R+ + + I V GSAFKNKGVQ +LD V+ YLP P +V N LD +
Sbjct: 246 AEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDD-GKD 304
Query: 361 EKVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLV 419
+ D P ALAFK+ F G LT+ R+Y GV+ GD ++N + + R+V
Sbjct: 305 TPAERHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIV 364
Query: 420 RMHSNEMEDIQEAHAGQIVAVFGVDCAS----------------------VMSLAVQPVS 457
+MH+N+ E+I+E AG I A G+ + V+S+AV+P +
Sbjct: 365 QMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPIILERMEFPEPVISIAVEPKT 424
Query: 458 KDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVG 517
K + AL R KEDP+FRV D ES QTII+GMGELHLDI V+R++RE+ V+A VG
Sbjct: 425 KADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVG 484
Query: 518 KPRVNFREAVTKR-AEFDYLHKKQSGGQGQYGRVIGYIEPLPLGS-PAKFEFENLLVGQA 575
KP+V +RE + ++ + + H KQSGG+GQYG V+ + PL GS P +EF N + G
Sbjct: 485 KPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGV 544
Query: 576 IPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQC 635
IP +IPA++KG +E +G L G+PV + + L G+ H VDSSELAFK+AA AF++
Sbjct: 545 IPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEG 604
Query: 636 YAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMF 695
+ AKPV+LEP+M VE++ P E G V GD+++R+GM+ G + E I A VPL+ MF
Sbjct: 605 FKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMF 664
Query: 696 GYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVK 731
GY+T LRS+T+G+ +TME+ ++ +V +++
Sbjct: 665 GYATQLRSLTKGRASYTMEFLKYDEAPSNVAQAVIE 700
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 570 bits (1469), Expect = e-162, Method: Compositional matrix adjust.
Identities = 313/696 (44%), Positives = 447/696 (64%), Gaps = 39/696 (5%)
Query: 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQS 130
R RNIGISAHID+GKTT TERILFYTG H+I EV DG A MD M+ E+E+GITI S
Sbjct: 8 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVH--DG-AATMDWMEQEQERGITITS 64
Query: 131 AATSCAW----KDYQ---INIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT 183
AAT+ W K Y+ INIIDTPGHVDFT+EVER++RVLDGA++V C+VGGVQ QS T
Sbjct: 65 AATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSET 124
Query: 184 VDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDL 243
V RQ +Y+VPR+AF+NK+DRMGA+ KV++Q +++L + +Q+ +G E+ F G+VDL
Sbjct: 125 VWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDL 184
Query: 244 VQLTAYYFHGSN-GEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISS 302
V++ A ++ ++ G ++PADM E + LIE +E ++L + +L E ++
Sbjct: 185 VKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTE 244
Query: 303 GDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVS--NYALDQKNNE 360
+++ A+R+ + + I V GSAFKNKGVQ +LD V+ YLP P +V N LD +
Sbjct: 245 AEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDD-GKD 303
Query: 361 EKVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLV 419
+ D P ALAFK+ F G LT+ R+Y GV+ GD ++N + + R+V
Sbjct: 304 TPAERHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIV 363
Query: 420 RMHSNEMEDIQEAHAGQIVAVFGVDCAS----------------------VMSLAVQPVS 457
+MH+N+ E+I+E AG I A G+ + V+S+AV+P +
Sbjct: 364 QMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPIILERMEFPEPVISIAVEPKT 423
Query: 458 KDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVG 517
K + AL R KEDP+FRV D ES QTII+GMGELHLDI V+R++RE+ V+A VG
Sbjct: 424 KADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVG 483
Query: 518 KPRVNFREAVTKR-AEFDYLHKKQSGGQGQYGRVIGYIEPLPLGS-PAKFEFENLLVGQA 575
KP+V +RE + ++ + + H KQSGG+GQYG V+ + PL GS P +EF N + G
Sbjct: 484 KPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGV 543
Query: 576 IPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQC 635
IP +IPA++KG +E +G L G+PV + + L G+ H VDSSELAFK+AA AF++
Sbjct: 544 IPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEG 603
Query: 636 YAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMF 695
+ AKPV+LEP+M VE++ P E G V GD+++R+GM+ G + E I A VPL+ MF
Sbjct: 604 FKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMF 663
Query: 696 GYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVK 731
GY+T LRS+T+G+ +TME+ ++ +V +++
Sbjct: 664 GYATQLRSLTKGRASYTMEFLKYDEAPSNVAQAVIE 699
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 565 bits (1456), Expect = e-161, Method: Compositional matrix adjust.
Identities = 302/687 (43%), Positives = 425/687 (61%), Gaps = 60/687 (8%)
Query: 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITI 128
++RLRNIGI+AHID+GKTT TERIL+YTGRI
Sbjct: 4 LKRLRNIGIAAHIDAGKTTTTERILYYTGRI----------------------------- 34
Query: 129 QSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM 188
A T+C WKD++INIIDTPGHVDFT+EVER++RVLDGAI+V S GV+ QS TV RQ
Sbjct: 35 --AVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA 92
Query: 189 RRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTA 248
+Y+VPR+AF NK+D+ GAD W V+ + +L +Q+P+G ED F G++D++++ A
Sbjct: 93 EKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKA 152
Query: 249 YYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEA 308
Y + G I +P + E +L+E+ ++ D+ + +L E + +L A
Sbjct: 153 YTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAA 212
Query: 309 IRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVI-LSG 367
IR+ T+ K PVF+GSA KNKGVQ LLD V+ YLP P ++ + E +V+ +
Sbjct: 213 IRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIP--PIKGTTPEGEVVEIHP 270
Query: 368 NPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEM 426
+P+GPL ALAFK+ + G+LT++R+Y G + G ++ N G+K +V RL+RMH+N
Sbjct: 271 DPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHR 330
Query: 427 EDIQEAHAGQIVAVFGVD-----------------------CASVMSLAVQPVSKDSGGQ 463
E+++E AG + AV G+ V+ +A++P +K +
Sbjct: 331 EEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEK 390
Query: 464 FSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 523
S+AL R +EDPTFRV E+GQTIISGMGELHL+I V+R++RE+KVDA VGKP+V +
Sbjct: 391 LSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAY 450
Query: 524 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPA 583
RE +TK + + +Q+GG+GQYG V +EPLP GS FEF N +VG IP +IPA
Sbjct: 451 RETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGS--GFEFVNAIVGGVIPKEYIPA 508
Query: 584 IEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVI 643
++KG +EA SG LIG PV ++V L DG+ VDSSE+AFK+A A ++ PVI
Sbjct: 509 VQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYAEVDSSEMAFKIAGSMAIKEAVQKGDPVI 568
Query: 644 LEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRS 703
LEP+M VE+ P E+ G V GD+N R+G I+G + G+ VI A VPL MFGY+T LRS
Sbjct: 569 LEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRS 628
Query: 704 MTQGKGEFTMEYKEHAPVSQDVQLQLV 730
TQG+G F M + + V + VQ +L+
Sbjct: 629 KTQGRGSFVMFFDHYQEVPKQVQEKLI 655
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 555 bits (1429), Expect = e-158, Method: Compositional matrix adjust.
Identities = 300/688 (43%), Positives = 441/688 (64%), Gaps = 29/688 (4%)
Query: 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGIT 127
S+E+ RNIGI AHID+GKTT TERIL+YTGRIH+I E +G ++MD M+ E+++GIT
Sbjct: 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETH--EG-ASQMDWMEQEQDRGIT 62
Query: 128 IQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ 187
I SAAT+ AW+ +++NIIDTPGHVDFTVEVER+LRVLDGA+ VL + GV+ Q+ TV RQ
Sbjct: 63 ITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ 122
Query: 188 MRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLT 247
Y VPR+ F+NK+D++GA+ + +L+ + A +Q+P+G ED+F+ ++DLV++
Sbjct: 123 ATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMK 182
Query: 248 AYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307
+ + G +I E+P D E R LIE V+E D+L + +L DE IS +L+E
Sbjct: 183 CFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKE 242
Query: 308 AIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNN-EEKVILS 366
AIR+AT +F PV G+AFKNKGVQ +LD V+ YLP P +V + +N EE+VI
Sbjct: 243 AIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAK 302
Query: 367 GNPDGPLVALAFK-LEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNE 425
+ ALAFK + + G+LT+ R+Y G + G ++ N GK+ +V RL++MH+N
Sbjct: 303 ADDSAEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANS 362
Query: 426 MEDIQEAHAGQIVAVFGVD--------CAS--------------VMSLAVQPVSKDSGGQ 463
++I ++G I A G+ C V+ L+V+P SK +
Sbjct: 363 RQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILESMEFPEPVIHLSVEPKSKADQDK 422
Query: 464 FSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 523
++AL + Q+EDPTF D E+GQ II GMGELHLDI V+R+++E+ V+ VG P V++
Sbjct: 423 MTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSY 482
Query: 524 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPA 583
RE A+ +QSGG+GQYG V +IE P + A FEFEN +VG +P +IP+
Sbjct: 483 RETFKSSAQVQGKFSRQSGGRGQYGDV--HIEFTPNETGAGFEFENAIVGGVVPREYIPS 540
Query: 584 IEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVI 643
+E G K+A +G L G+P+ ++ L DG+ H VDSSE+AFK+AA A ++ PVI
Sbjct: 541 VEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVI 600
Query: 644 LEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRS 703
LEP+M V +++P E+ G + GD+ R+G + G + G+ V+ A+VPL+ MFGY+T+LRS
Sbjct: 601 LEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAYVPLSEMFGYATSLRS 660
Query: 704 MTQGKGEFTMEYKEHAPVSQDVQLQLVK 731
TQG+G +TM + +A V + + ++K
Sbjct: 661 NTQGRGTYTMYFDHYAEVPKSIAEDIIK 688
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 554 bits (1428), Expect = e-158, Method: Compositional matrix adjust.
Identities = 300/688 (43%), Positives = 441/688 (64%), Gaps = 29/688 (4%)
Query: 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGIT 127
S+E+ RNIGI AHID+GKTT TERIL+YTGRIH+I E +G ++MD M+ E+++GIT
Sbjct: 6 SLEKTRNIGIIAHIDAGKTTTTERILYYTGRIHKIGETH--EG-ASQMDWMEQEQDRGIT 62
Query: 128 IQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ 187
I SAAT+ AW+ +++NIIDTPGHVDFTVEVER+LRVLDGA+ VL + GV+ Q+ TV RQ
Sbjct: 63 ITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ 122
Query: 188 MRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLT 247
Y VPR+ F+NK+D++GA+ + +L+ + A +Q+P+G ED+F+ ++DLV++
Sbjct: 123 ATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMK 182
Query: 248 AYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307
+ + G +I E+P D E R LIE V+E D+L + +L DE IS +L+E
Sbjct: 183 CFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKE 242
Query: 308 AIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNN-EEKVILS 366
AIR+AT +F PV G+AFKNKGVQ +LD V+ YLP P +V + +N EE+VI
Sbjct: 243 AIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAK 302
Query: 367 GNPDGPLVALAFK-LEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNE 425
+ ALAFK + + G+LT+ R+Y G + G ++ N GK+ +V RL++MH+N
Sbjct: 303 ADDSAEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANS 362
Query: 426 MEDIQEAHAGQIVAVFGVD--------CAS--------------VMSLAVQPVSKDSGGQ 463
++I ++G I A G+ C V+ L+V+P SK +
Sbjct: 363 RQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILESMEFPEPVIHLSVEPKSKADQDK 422
Query: 464 FSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 523
++AL + Q+EDPTF D E+GQ II GMGELHLDI V+R+++E+ V+ VG P V++
Sbjct: 423 MTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSY 482
Query: 524 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPA 583
RE A+ +QSGG+GQYG V +IE P + A FEFEN +VG +P +IP+
Sbjct: 483 RETFKSSAQVQGKFSRQSGGRGQYGDV--HIEFTPNETGAGFEFENAIVGGVVPREYIPS 540
Query: 584 IEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVI 643
+E G K+A +G L G+P+ ++ L DG+ H VDSSE+AFK+AA A ++ PVI
Sbjct: 541 VEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVI 600
Query: 644 LEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRS 703
LEP+M V +++P E+ G + GD+ R+G + G + G+ V+ A+VPL+ MFGY+T+LRS
Sbjct: 601 LEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAYVPLSEMFGYATSLRS 660
Query: 704 MTQGKGEFTMEYKEHAPVSQDVQLQLVK 731
TQG+G +TM + +A V + + ++K
Sbjct: 661 NTQGRGTYTMYFDHYAEVPKSIAEDIIK 688
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 552 bits (1423), Expect = e-157, Method: Compositional matrix adjust.
Identities = 299/688 (43%), Positives = 440/688 (63%), Gaps = 29/688 (4%)
Query: 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGIT 127
S+E+ RNIGI AHID+GKTT TERIL+YTGRIH+I E +G ++MD M+ E+++GIT
Sbjct: 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETH--EG-ASQMDWMEQEQDRGIT 62
Query: 128 IQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ 187
I SAAT+ AW+ +++NIIDTPGHVD TVEVER+LRVLDGA+ VL + GV+ Q+ TV RQ
Sbjct: 63 ITSAATTAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ 122
Query: 188 MRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLT 247
Y VPR+ F+NK+D++GA+ + +L+ + A +Q+P+G ED+F+ ++DLV++
Sbjct: 123 ATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMK 182
Query: 248 AYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307
+ + G +I E+P D E R LIE V+E D+L + +L DE IS +L+E
Sbjct: 183 CFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKE 242
Query: 308 AIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNN-EEKVILS 366
AIR+AT +F PV G+AFKNKGVQ +LD V+ YLP P +V + +N EE+VI
Sbjct: 243 AIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAK 302
Query: 367 GNPDGPLVALAFK-LEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNE 425
+ ALAFK + + G+LT+ R+Y G + G ++ N GK+ +V RL++MH+N
Sbjct: 303 ADDSAEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANS 362
Query: 426 MEDIQEAHAGQIVAVFGVD--------CAS--------------VMSLAVQPVSKDSGGQ 463
++I ++G I A G+ C V+ L+V+P SK +
Sbjct: 363 RQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILESMEFPEPVIHLSVEPKSKADQDK 422
Query: 464 FSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 523
++AL + Q+EDPTF D E+GQ II GMGELHLDI V+R+++E+ V+ VG P V++
Sbjct: 423 MTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSY 482
Query: 524 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPA 583
RE A+ +QSGG+GQYG V +IE P + A FEFEN +VG +P +IP+
Sbjct: 483 RETFKSSAQVQGKFSRQSGGRGQYGDV--HIEFTPNETGAGFEFENAIVGGVVPREYIPS 540
Query: 584 IEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVI 643
+E G K+A +G L G+P+ ++ L DG+ H VDSSE+AFK+AA A ++ PVI
Sbjct: 541 VEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVI 600
Query: 644 LEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRS 703
LEP+M V +++P E+ G + GD+ R+G + G + G+ V+ A+VPL+ MFGY+T+LRS
Sbjct: 601 LEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAYVPLSEMFGYATSLRS 660
Query: 704 MTQGKGEFTMEYKEHAPVSQDVQLQLVK 731
TQG+G +TM + +A V + + ++K
Sbjct: 661 NTQGRGTYTMYFDHYAEVPKSIAEDIIK 688
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 552 bits (1422), Expect = e-157, Method: Compositional matrix adjust.
Identities = 299/688 (43%), Positives = 440/688 (63%), Gaps = 29/688 (4%)
Query: 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGIT 127
S+E+ RNIGI AHID+GKTT TERIL+YTGRIH+I E +G ++MD M+ E+++GIT
Sbjct: 6 SLEKTRNIGIIAHIDAGKTTTTERILYYTGRIHKIGETH--EG-ASQMDWMEQEQDRGIT 62
Query: 128 IQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ 187
I SAAT+ AW+ +++NIIDTPGHVD TVEVER+LRVLDGA+ VL + GV+ Q+ TV RQ
Sbjct: 63 ITSAATTAAWEGHRVNIIDTPGHVDLTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ 122
Query: 188 MRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLT 247
Y VPR+ F+NK+D++GA+ + +L+ + A +Q+P+G ED+F+ ++DLV++
Sbjct: 123 ATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMK 182
Query: 248 AYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307
+ + G +I E+P D E R LIE V+E D+L + +L DE IS +L+E
Sbjct: 183 CFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKE 242
Query: 308 AIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNN-EEKVILS 366
AIR+AT +F PV G+AFKNKGVQ +LD V+ YLP P +V + +N EE+VI
Sbjct: 243 AIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAK 302
Query: 367 GNPDGPLVALAFK-LEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNE 425
+ ALAFK + + G+LT+ R+Y G + G ++ N GK+ +V RL++MH+N
Sbjct: 303 ADDSAEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANS 362
Query: 426 MEDIQEAHAGQIVAVFGVD--------CAS--------------VMSLAVQPVSKDSGGQ 463
++I ++G I A G+ C V+ L+V+P SK +
Sbjct: 363 RQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILESMEFPEPVIHLSVEPKSKADQDK 422
Query: 464 FSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 523
++AL + Q+EDPTF D E+GQ II GMGELHLDI V+R+++E+ V+ VG P V++
Sbjct: 423 MTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSY 482
Query: 524 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPA 583
RE A+ +QSGG+GQYG V +IE P + A FEFEN +VG +P +IP+
Sbjct: 483 RETFKSSAQVQGKFSRQSGGRGQYGDV--HIEFTPNETGAGFEFENAIVGGVVPREYIPS 540
Query: 584 IEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVI 643
+E G K+A +G L G+P+ ++ L DG+ H VDSSE+AFK+AA A ++ PVI
Sbjct: 541 VEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVI 600
Query: 644 LEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRS 703
LEP+M V +++P E+ G + GD+ R+G + G + G+ V+ A+VPL+ MFGY+T+LRS
Sbjct: 601 LEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAYVPLSEMFGYATSLRS 660
Query: 704 MTQGKGEFTMEYKEHAPVSQDVQLQLVK 731
TQG+G +TM + +A V + + ++K
Sbjct: 661 NTQGRGTYTMYFDHYAEVPKSIAEDIIK 688
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 530 bits (1364), Expect = e-150, Method: Compositional matrix adjust.
Identities = 291/702 (41%), Positives = 434/702 (61%), Gaps = 44/702 (6%)
Query: 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITI 128
+ R RNIGI AH+D+GKTT TER+LFYTG H++ EV DG A D M E+E+GITI
Sbjct: 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVH--DG-AATTDWMVQEQERGITI 66
Query: 129 QSAATSCAWK-------DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQS 181
SAA + WK +Y++N+IDTPGHVDFT+EVER+LRVLDGA++V C GV+ QS
Sbjct: 67 TSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS 126
Query: 182 ITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLV 241
TV RQ +Y VPR+ ++NK+DR GA+ +V++Q + +L H VQ+ +G E+ F G V
Sbjct: 127 ETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGHTPVPVQLAIGAEENFVGQV 186
Query: 242 DLVQLTAYYFHGSN-GEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPI 300
DL+++ A Y++ + G E+PA+++ E R ++E +E +++L + +L + +
Sbjct: 187 DLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGEL 246
Query: 301 SSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEV---SNYALDQK 357
S +++E +R T+A + +P GS+FKNKGV +LD V+ YLP PTE+ + D +
Sbjct: 247 SEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDE 306
Query: 358 NNEEKVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVP 416
E++ N P +LAFK+ F G LT+ R+Y GV+ GD ++N GKK +V
Sbjct: 307 TVEDERHADDNE--PFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVG 364
Query: 417 RLVRMHSNEMEDIQEAHAGQIVAVFGVD--------CA--------------SVMSLAVQ 454
R+V+MH+N+ E+I+E AG I A+ G+ C+ V+S+AV+
Sbjct: 365 RMVQMHANQREEIKEVRAGDIAALIGMKDVTTGDTLCSIEKPIILERMDFPEPVISVAVE 424
Query: 455 PVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDA 514
P +K + AL + +EDP+FRV D ESGQTIISGMGELHLDI V+R++RE+ V+A
Sbjct: 425 PKTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREFGVEA 484
Query: 515 TVGKPRVNFREAVTK-RAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFE----FEN 569
+GKP+V +RE +TK E + +QSGG+GQ+G + FEN
Sbjct: 485 NIGKPQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDEKGNITEGLVFEN 544
Query: 570 LLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAI 629
+VG +P +IPAI+KG +E +G + G+P+ L+ + DG+ H VDS+E+AFK+AA
Sbjct: 545 EVVGGVVPKEYIPAIQKGIEEQMKNGVVAGYPLIGLKATVFDGSYHDVDSNEMAFKIAAS 604
Query: 630 YAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHV 689
A +Q +LEP+M VE+ P ++ G V GD+N+R+G+I G + VI A V
Sbjct: 605 MATKQLAQKGGGKVLEPIMKVEVVTPEDYMGDVMGDLNRRRGLIQGMEDTVSGKVIRAEV 664
Query: 690 PLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVK 731
PL MFGY+T +RSM+QG+ ++ME+ ++A ++ LVK
Sbjct: 665 PLGEMFGYATDVRSMSQGRASYSMEFSKYAEAPSNIVEALVK 706
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 317 bits (813), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 215/686 (31%), Positives = 351/686 (51%), Gaps = 61/686 (8%)
Query: 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLE-REKGITIQS 130
+R + + H SGKTTLTE +L+ TG E RGR G E + T+++
Sbjct: 9 IRTVALVGHAGSGKTTLTEALLYKTG----AKERRGRVEEGTTTTDYTPEAKLHRTTVRT 64
Query: 131 AATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR 190
++ +++ ++D PG+ DF E+ AL D A++ + + GVQ + R
Sbjct: 65 GVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER 124
Query: 191 YEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYY 250
+PR+ + KLD+ G D + +L+ RS L + +P+ ++ GL+D+ AY
Sbjct: 125 LGLPRMVVVTKLDK-GGDYYALLEDLRSTL-GPILPIDLPLYEGGKWVGLIDVFHGKAYR 182
Query: 251 FHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIR 310
+ NGE+ EVP + V R+E++E + E D+ L + +L E ++ LE+A
Sbjct: 183 Y--ENGEE-REAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFH 239
Query: 311 RATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPD 370
A PV + S + GV PLL+ +L LP PTE D
Sbjct: 240 EAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTERFG------------------D 281
Query: 371 GPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDI 429
GP +A FK++ F GQ+ YLR+Y G ++ GD + + ++++P L ++ ++
Sbjct: 282 GPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGDSL--QSEAGQVRLPHLYVPMGKDLLEV 339
Query: 430 QEAHAGQIVAV---FGVDCASVM---------------------SLAVQPVSKDSGGQFS 465
+EA AG ++ V G+ V+ +A+ P + +
Sbjct: 340 EEAEAGFVLGVPKAEGLHRGMVLWQGEKPESEEVPFARLPDPNVPVALHPKGRTDEARLG 399
Query: 466 KALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNFRE 525
+AL + +EDP+ ++ E+G+ ++ G GELHL ER+ ++Y V+ P+V +RE
Sbjct: 400 EALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERL-QDYGVEVEFSVPKVPYRE 458
Query: 526 AVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIE 585
+ K AE +KKQ+GG GQYG V +EP +++ FE + G IPS + AIE
Sbjct: 459 TIKKVAEGQGKYKKQTGGHGQYGDVWLRLEPA-----SEYGFEWRITGGVIPSKYQEAIE 513
Query: 586 KGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILE 645
+G KEAA G L G PV + ++ +G+ H VDSS+LAF++AA AF++ A A PV+LE
Sbjct: 514 EGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAEAHPVLLE 573
Query: 646 PVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMT 705
P+ +++ P E G V D+ R+G I+G +QEG SV+ A VPL + Y AL +T
Sbjct: 574 PIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGALSVVHAEVPLAEVLEYYKALPGLT 633
Query: 706 QGKGEFTMEYKEHAPVSQDVQLQLVK 731
G G +T+E+ +A V + ++V+
Sbjct: 634 GGAGAYTLEFSHYAEVPPHLAQRIVQ 659
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 198 bits (504), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 177/669 (26%), Positives = 308/669 (46%), Gaps = 85/669 (12%)
Query: 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQS 130
++ NIG+ AH+D+GKTTLTE +L+ +G I E+ V D + D+ LER++GITIQ+
Sbjct: 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSV---DKGTTRTDNTLLERQRGITIQT 57
Query: 131 AATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR 190
TS W++ ++NIIDTPGH+DF EV R+L VLDGAIL++ + GVQ+Q+ + +R+
Sbjct: 58 GITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK 117
Query: 191 YEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYY 250
+P + FINK+D+ G D V + KL A + + +E L V +T +
Sbjct: 118 MGIPTIFFINKIDQNGIDLSTVYQDIKEKLS---AEIVIKQKVE-----LYPNVCVTNF- 168
Query: 251 FHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIR 310
E + V E +D L + ++S + + + +LE+
Sbjct: 169 ------------------------TESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEES 204
Query: 311 RATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPD 370
P++ GSA N G+ L++ + + Y+ + E L GN
Sbjct: 205 IRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF--------YSSTHRGPSE---LCGN-- 251
Query: 371 GPLVALAFKLEEGRFGQ-LTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDI 429
FK+E + Q L Y+R+Y GV+ D + V+ +KIKV + + E+ I
Sbjct: 252 ------VFKIEYTKKRQRLAYIRLYSGVLHLRDS-VRVSEKEKIKVTEMYTSINGELCKI 304
Query: 430 QEAHAGQIV----------AVFG-----------VDCASVMSLAVQPVSKDSGGQFSKAL 468
A++G+IV +V G + ++ V+P + AL
Sbjct: 305 DRAYSGEIVILQNEFLKLNSVLGDTKLLPQRKKIENPHPLLQTTVEPSKPEQREMLLDAL 364
Query: 469 NRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNFREAVT 528
DP R +D+ + + I+S +G++ +++ ++ +Y V+ + +P V + E
Sbjct: 365 LEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIELKEPTVIYMERPL 424
Query: 529 KRAEFDYLHKKQSGGQGQYGRVIGY-IEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKG 587
K AE+ +H + + IG + PLPLGS ++E ++ +G + +F A+ +G
Sbjct: 425 KNAEYT-IHIEVP--PNPFWASIGLSVSPLPLGSGMQYE-SSVSLG-YLNQSFQNAVMEG 479
Query: 588 FKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPV 647
+ G L G V ++ G ++ S+ F+M A Q A +LEP
Sbjct: 480 IRYGCEQG-LYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPY 538
Query: 648 MLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMTQG 707
+ ++ P E+ D K IV + ++ +++ +P + Y + L T G
Sbjct: 539 LSFKIYAPQEYLSRAYNDAPKYCANIVDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNG 598
Query: 708 KGEFTMEYK 716
+ E K
Sbjct: 599 RSVCLTELK 607
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 166 bits (419), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 129/466 (27%), Positives = 208/466 (44%), Gaps = 47/466 (10%)
Query: 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGV-GAKMDSMDLEREKGITIQSA 131
R I +H D+GKTTLTE++L + G I ++ R A D +LE+++GI++ ++
Sbjct: 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWXELEKQRGISVTTS 73
Query: 132 ATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY 191
+KDY IN++DTPGH DFT + R L +D A+ V+ + GV+ ++I + R
Sbjct: 74 VXQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALXVIDAAKGVEPRTIKLXEVCRLR 133
Query: 192 EVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYF 251
P FINK DR ++LD+ S LR HCA V P+G F+G+ L++ Y +
Sbjct: 134 HTPIXTFINKXDRDTRPSIELLDEIESILRIHCAPVTWPIGXGKYFKGIYHLIEDAIYLY 193
Query: 252 HGSNGEKIVTGEVPADMETFVAEKRRELIELVS--EVDDKLGDM---FLSDEPISSGDLE 306
E++ GE E IE ++ E+D KLGD+ ++ + G
Sbjct: 194 QPGKHERV--GE-------------SERIEGINNPELDKKLGDLASELRNEIELVKGASH 238
Query: 307 EAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILS 366
R + + P+F GSA N GV LLD + P P + K EEK
Sbjct: 239 PFEREGYLKGELTPIFFGSAINNFGVGELLDAFVKEAPPPQGRETNSRLVKPEEEKF--- 295
Query: 367 GNPDGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEM 426
G + + + G ++ +LRI G +KG +V K+I++ + + +
Sbjct: 296 ---SGFVFKIQANXDPGHRDRIAFLRIASGQYQKGXKAYHVRLKKEIQINNALTFXAGKR 352
Query: 427 EDIQEAHAGQIVAVFGVDCASVMSLAVQPVSKDSGG--QFSKALNRFQK-EDPTFRVGL- 482
E+ +EA G I+ + + Q G F+ L R + +DP + L
Sbjct: 353 ENAEEAWPGDIIGLHNHGTIQIGDTFTQGERFKFTGIPNFASELFRLVRLKDPLKQKALL 412
Query: 483 ----------------DAESGQTIISGMGELHLDIYVERIRREYKV 512
+S + I+ +G L D+ R+ EY V
Sbjct: 413 KGLTQLSEEGATQLFRPLDSNELILGAVGLLQFDVVAYRLENEYNV 458
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 162 bits (411), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 124/478 (25%), Positives = 224/478 (46%), Gaps = 47/478 (9%)
Query: 63 PWWKESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGR-DGVGAKMDSMDLE 121
P+ +E +R R I +H D+GKTT+TE++L + I V+GR AK D M++E
Sbjct: 5 PYLQEVAKR-RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEME 63
Query: 122 REKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQS 181
+++GI+I ++ + D +N++DTPGH DF+ + R L +D ++V+ + GV+ ++
Sbjct: 64 KQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT 123
Query: 182 ITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLV 241
+ R + P L F+NKLDR DP ++LD+ ++L+ CA + P+G F+G+
Sbjct: 124 RKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVY 183
Query: 242 DLVQLTAYYFHGSNGE-----KIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLS 296
L + Y + G +IV G D++ V E +L ++ D+L
Sbjct: 184 HLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGE------DLAQQLRDEL------ 231
Query: 297 DEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQ 356
+ G E + +A + PVF G+A N GV +LDG++ + P P
Sbjct: 232 --ELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTV 289
Query: 357 KNNEEKVILSGNPDGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVP 416
+ +E+K G + + ++ ++ ++R+ G KG + V T K + +
Sbjct: 290 EASEDKFT------GFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVIS 343
Query: 417 RLVRMHSNEMEDIQEAHAGQIVAVFGVDCASVMSLAVQ-PVSKDSG-GQFSKAL-NRFQK 473
+ + + ++EA+ G I+ + + Q + K +G F+ L R +
Sbjct: 344 DALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGEMMKFTGIPNFAPELFRRIRL 403
Query: 474 EDPTFR-------VGLDAE----------SGQTIISGMGELHLDIYVERIRREYKVDA 514
+DP + V L E + I+ +G L D+ V R++ EY V+A
Sbjct: 404 KDPLKQKQLLKGLVQLSEEGAVQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEA 461
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 162 bits (411), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 124/478 (25%), Positives = 224/478 (46%), Gaps = 47/478 (9%)
Query: 63 PWWKESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGR-DGVGAKMDSMDLE 121
P+ +E +R R I +H D+GKTT+TE++L + I V+GR AK D M++E
Sbjct: 5 PYLQEVAKR-RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEME 63
Query: 122 REKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQS 181
+++GI+I ++ + D +N++DTPGH DF+ + R L +D ++V+ + GV+ ++
Sbjct: 64 KQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT 123
Query: 182 ITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLV 241
+ R + P L F+NKLDR DP ++LD+ ++L+ CA + P+G F+G+
Sbjct: 124 RKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITWPIGCGKLFKGVY 183
Query: 242 DLVQLTAYYFHGSNGE-----KIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLS 296
L + Y + G +IV G D++ V E +L ++ D+L
Sbjct: 184 HLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGE------DLAQQLRDEL------ 231
Query: 297 DEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQ 356
+ G E + +A + PVF G+A N GV +LDG++ + P P
Sbjct: 232 --ELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWAPAPMPRQTDTRTV 289
Query: 357 KNNEEKVILSGNPDGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVP 416
+ +E+K G + + ++ ++ ++R+ G KG + V T K + +
Sbjct: 290 EASEDKFT------GFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVIS 343
Query: 417 RLVRMHSNEMEDIQEAHAGQIVAVFGVDCASVMSLAVQ-PVSKDSG-GQFSKAL-NRFQK 473
+ + + ++EA+ G I+ + + Q + K +G F+ L R +
Sbjct: 344 DALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGEMMKFTGIPNFAPELFRRIRL 403
Query: 474 EDPTFR-------VGLDAE----------SGQTIISGMGELHLDIYVERIRREYKVDA 514
+DP + V L E + I+ +G L D+ V R++ EY V+A
Sbjct: 404 KDPLKQKQLLKGLVQLSEEGAVQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEA 461
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 152 bits (384), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 119/467 (25%), Positives = 209/467 (44%), Gaps = 46/467 (9%)
Query: 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGV-GAKMDSMDLEREKGITIQSAA 132
I +H D+GKTTLTE++L + G I V+ R A D M +ERE+GI++ ++
Sbjct: 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSV 92
Query: 133 TSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYE 192
++D +N++DTPGH DF+ + R L +D A++V+ + GV++Q+ + R
Sbjct: 93 MQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRA 152
Query: 193 VPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFH 252
P + F+NK+DR P V+ L+ CA + P+G+ F+G DL+ + F
Sbjct: 153 TPVMTFVNKMDREALHPLDVMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFS 212
Query: 253 GSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLG-DMFLSDEPISSGDLEEAIRR 311
++G +I +G V +L E + + ++L D+ L +E + D E ++
Sbjct: 213 ATHGGRIQSGIV------IHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLK- 265
Query: 312 ATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDG 371
+ PVF GSA N GV+ +LD + + P P + EE G
Sbjct: 266 ----GELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFT------G 315
Query: 372 PLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQE 431
+ + +++ ++ +LRI G +G + + TGK + V + + ++E
Sbjct: 316 VVFKIQANMDKAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEE 375
Query: 432 AHAGQIVAVFG----------VDCASVMSLA------------VQPVSKDSGGQFSKALN 469
A G I+ + + V+ V+ + Q K L
Sbjct: 376 AFPGDIIGIPNHGTIKIGDTFTESKEVLKFVGIPNFAPEHFRRVRLKNPLKAKQLQKGLE 435
Query: 470 RFQKEDPT--FRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDA 514
+ +E FR ++ + I+ +G L D+ V R+ EY VDA
Sbjct: 436 QLAEEGAVQLFRPLVNNDY---ILGAVGVLQFDVIVARLADEYGVDA 479
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 109/186 (58%), Gaps = 22/186 (11%)
Query: 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITI 128
M+ +RN I AHID GK+TL++RI+ G + + R+ +DSMDLERE+GITI
Sbjct: 1 MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSD------REMEAQVLDSMDLERERGITI 54
Query: 129 QSAATSCAWK-----DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT 183
++ + + +K YQ+N IDTPGHVDF+ EV R+L +GA+LV+ + GV++Q++
Sbjct: 55 KAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLA 114
Query: 184 VDRQMRRYEVPRLAFINKLDRMGADPWKVLDQ--------ARSKLRHHCAAVQVPMGLED 235
++ + +NK+D ADP +V ++ A +R C+A + +G++D
Sbjct: 115 NCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVR--CSA-KTGVGVQD 171
Query: 236 QFQGLV 241
+ LV
Sbjct: 172 VLERLV 177
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 34/178 (19%)
Query: 385 FGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEME--DIQEAHAGQIVA--- 439
G ++ +RI G +RKGD + ++TG+ RL +++ +++ G +V
Sbjct: 204 LGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWLVCAIK 263
Query: 440 -VFGVDCASVMSLA---------------------VQPVSKDSGGQFSKALNRFQKEDPT 477
+ G ++LA + PVS D F AL + D +
Sbjct: 264 DIHGAPVGDTLTLARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDAS 323
Query: 478 FRVGLDAESGQTIISG-----MGELHLDIYVERIRREYKVDATVGKPRVNFREAVTKR 530
+ ES + G +G LH++I ER+ REY +D P V + T R
Sbjct: 324 LF--YEPESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVETTSR 379
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 109/186 (58%), Gaps = 22/186 (11%)
Query: 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITI 128
M+ +RN I AHID GK+TL++RI+ G + + R+ +DSMDLERE+GITI
Sbjct: 1 MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSD------REMEAQVLDSMDLERERGITI 54
Query: 129 QSAATSCAWK-----DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT 183
++ + + +K YQ+N IDTPGHVDF+ EV R+L +GA+LV+ + GV++Q++
Sbjct: 55 KAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLA 114
Query: 184 VDRQMRRYEVPRLAFINKLDRMGADPWKVLDQ--------ARSKLRHHCAAVQVPMGLED 235
++ + +NK+D ADP +V ++ A +R C+A + +G++D
Sbjct: 115 NCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVR--CSA-KTGVGVQD 171
Query: 236 QFQGLV 241
+ LV
Sbjct: 172 VLERLV 177
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 34/178 (19%)
Query: 385 FGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEME--DIQEAHAGQIVA--- 439
G ++ +RI G +RKGD + ++TG+ RL +++ +++ G +V
Sbjct: 204 LGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWLVCAIK 263
Query: 440 -VFGVDCASVMSLA---------------------VQPVSKDSGGQFSKALNRFQKEDPT 477
+ G ++LA + PVS D F AL + D +
Sbjct: 264 DIHGAPVGDTLTLARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDAS 323
Query: 478 FRVGLDAESGQTIISG-----MGELHLDIYVERIRREYKVDATVGKPRVNFREAVTKR 530
+ ES + G +G LH++I ER+ REY +D P V + T R
Sbjct: 324 L--FYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVETTSR 379
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 105/183 (57%), Gaps = 16/183 (8%)
Query: 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSA 131
+RN I AH+D GK+TL +R+L YTG I E R+ +D++D+ERE+GIT++
Sbjct: 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISE------REKREQLLDTLDVERERGITVKXQ 59
Query: 132 ATSCAWK-----DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR 186
A +K Y++++IDTPGHVDF+ EV RAL +GA+L++ + G+++Q++
Sbjct: 60 AVRXFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFW 119
Query: 187 QMRRYEVPRLAFINKLDRMGADPWKVLDQARSKL-----RHHCAAVQVPMGLEDQFQGLV 241
+ ++ + INK+D AD +V Q L A+ + +G+E+ + +V
Sbjct: 120 KAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIV 179
Query: 242 DLV 244
+ +
Sbjct: 180 NRI 182
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 94/236 (39%), Gaps = 54/236 (22%)
Query: 322 FMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLE 381
+ SA + G++ +L+ +++ +P P G+P PL AL F
Sbjct: 161 ILASAKEGIGIEEILEAIVNRIPPP-------------------KGDPQKPLKALIFDSY 201
Query: 382 EGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKV-------PRLVRMH----------S 423
+ G + ++RI++G ++ GD I +TGK+ +V P+ + +
Sbjct: 202 YDPYRGAVAFVRIFDGEVKPGDKIXLXSTGKEYEVTEVGAQTPKXTKFDKLSAGDVGYIA 261
Query: 424 NEMEDIQEAHAGQIVA---------VFGVDCASVMSLA-VQPVSKDSGGQFSKALNRFQK 473
++D+++ G + V G A A + P + + AL ++
Sbjct: 262 ASIKDVRDIRIGDTITHAKNPTKEPVPGFQPAKPXVYAGIYPAEDTTYEELRDALEKYAI 321
Query: 474 EDPTFRVGLDAESGQTIISG-----MGELHLDIYVERIRREYKVDATVGKPRVNFR 524
D + + ES + G +G LH +I ER+ REY V P V +R
Sbjct: 322 NDAA--IVYEPESSPALGXGFRVGFLGLLHXEIVQERLEREYGVKIITTAPNVIYR 375
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 105/183 (57%), Gaps = 16/183 (8%)
Query: 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSA 131
+RN I AH+D GK+TL +R+L YTG I E R+ +D++D+ERE+GIT++
Sbjct: 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISE------REKREQLLDTLDVERERGITVKMQ 59
Query: 132 ATSCAWK-----DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR 186
A +K Y++++IDTPGHVDF+ EV RAL +GA+L++ + G+++Q++
Sbjct: 60 AVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFW 119
Query: 187 QMRRYEVPRLAFINKLDRMGADPWKVLDQARSKL-----RHHCAAVQVPMGLEDQFQGLV 241
+ ++ + INK+D AD +V Q L A+ + +G+E+ + +V
Sbjct: 120 KAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIV 179
Query: 242 DLV 244
+ +
Sbjct: 180 NRI 182
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 99/236 (41%), Gaps = 54/236 (22%)
Query: 322 FMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLE 381
+ SA + G++ +L+ +++ +P P G+P PL AL F
Sbjct: 161 ILASAKEGIGIEEILEAIVNRIPPP-------------------KGDPQKPLKALIFDSY 201
Query: 382 EGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKV-------PRLVRMH----------S 423
+ G + ++RI++G ++ GD I+ ++TGK+ +V P++ + +
Sbjct: 202 YDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTPKMTKFDKLSAGDVGYIA 261
Query: 424 NEMEDIQEAHAGQIVA---------VFGVDCASVMSLA-VQPVSKDSGGQFSKALNRFQK 473
++D+++ G + V G A M A + P + + AL ++
Sbjct: 262 ASIKDVRDIRIGDTITHAKNPTKEPVPGFQPAKPMVYAGIYPAEDTTYEELRDALEKYAI 321
Query: 474 EDPTFRVGLDAESGQTIISG-----MGELHLDIYVERIRREYKVDATVGKPRVNFR 524
D + + ES + G +G LH++I ER+ REY V P V +R
Sbjct: 322 NDAA--IVYEPESSPALGMGFRVGFLGLLHMEIVQERLEREYGVKIITTAPNVIYR 375
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 119/515 (23%), Positives = 201/515 (39%), Gaps = 114/515 (22%)
Query: 304 DLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQ------K 357
DLE V RKF+P LL+ ++ +LP P Y +Q
Sbjct: 313 DLEGKALLKVVMRKFLP----------AADALLEMIVLHLPSPVTAQAYRAEQLYEGPAD 362
Query: 358 NNEEKVILSGNPDGPLVALAFKL----EEGRFGQLTYLRIYEGVIRKGDFI----INVNT 409
+ I + +P L+ K+ ++GRF + R++ G ++ G + N
Sbjct: 363 DANCIAIKNCDPKADLMLYVSKMVPTSDKGRF--YAFGRVFAGTVKSGQKVRIQGPNYVP 420
Query: 410 GKK----IK-VPRLVRMHSNEMEDIQEAHAGQIVAVFGVD----------------CASV 448
GKK IK + R+V M +E I + AG I+ + G+D V
Sbjct: 421 GKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKV 480
Query: 449 MSLAVQPV--------SKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLD 500
M +V PV + + + + L R K DP + +ESG+ I++G GELHL+
Sbjct: 481 MKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYM-SESGEHIVAGTGELHLE 539
Query: 501 IYVERIRREYK-VDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPL 559
I ++ + ++ V + P V +RE V + L K + ++ R+ Y++ P+
Sbjct: 540 ICLQDLEHDHAGVPLKISPPVVAYRETVESESSQTALSKSPN----KHNRI--YLKAEPI 593
Query: 560 GSPAKFEFEN-----------------------------------------LLVGQAIPS 578
EN L++ Q
Sbjct: 594 DEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAV 653
Query: 579 NFIPAIEK----GFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQ 634
++ I+ F+ A G + G + +RV + D HA D+ R
Sbjct: 654 QYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHA-DAIHRGGGQIIPTMRRA 712
Query: 635 CYAA---AKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVIT--AHV 689
YA A P I EPV LVE++ P + G + +NK++G +V +Q + T A++
Sbjct: 713 TYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYL 772
Query: 690 PLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQD 724
P+N FG++ LR T G+ M + + + D
Sbjct: 773 PVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSD 807
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 21/154 (13%)
Query: 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGI 126
+ + +RN+ + AH+D GK+TLT+ ++ G I + G D+ E+E+GI
Sbjct: 14 DKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISA-----AKAGEARFTDTRKDEQERGI 68
Query: 127 TIQSAATSCAWK----------------DYQINIIDTPGHVDFTVEVERALRVLDGAILV 170
TI+S A S + + IN+ID+PGHVDF+ EV ALRV DGA++V
Sbjct: 69 TIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVV 128
Query: 171 LCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204
+ ++ GV Q+ TV RQ + + INK+DR
Sbjct: 129 VDTIEGVCVQTETVLRQALGERIKPVVVINKVDR 162
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 119/515 (23%), Positives = 201/515 (39%), Gaps = 114/515 (22%)
Query: 304 DLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQ------K 357
DLE V RKF+P LL+ ++ +LP P Y +Q
Sbjct: 313 DLEGKALLKVVMRKFLP----------AADALLEMIVLHLPSPVTAQAYRAEQLYEGPAD 362
Query: 358 NNEEKVILSGNPDGPLVALAFKL----EEGRFGQLTYLRIYEGVIRKGDFI----INVNT 409
+ I + +P L+ K+ ++GRF + R++ G ++ G + N
Sbjct: 363 DANCIAIKNCDPKADLMLYVSKMVPTSDKGRF--YAFGRVFAGTVKSGQKVRIQGPNYVP 420
Query: 410 GKK----IK-VPRLVRMHSNEMEDIQEAHAGQIVAVFGVD----------------CASV 448
GKK IK + R+V M +E I + AG I+ + G+D V
Sbjct: 421 GKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKV 480
Query: 449 MSLAVQPV--------SKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLD 500
M +V PV + + + + L R K DP + +ESG+ I++G GELHL+
Sbjct: 481 MKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYM-SESGEHIVAGTGELHLE 539
Query: 501 IYVERIRREYK-VDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPL 559
I ++ + ++ V + P V +RE V + L K + ++ R+ Y++ P+
Sbjct: 540 ICLQDLEHDHAGVPLKISPPVVAYRETVESESSQTALSKSPN----KHNRI--YLKAEPI 593
Query: 560 GSPAKFEFE-----------------------------------------NLLVGQAIPS 578
E NL++ Q
Sbjct: 594 DEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAV 653
Query: 579 NFIPAIEK----GFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQ 634
++ I+ F+ A G + G + +RV + D HA D+ R
Sbjct: 654 QYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHA-DAIXRGGGQIIPTMRRA 712
Query: 635 CYAA---AKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVIT--AHV 689
YA A P I EPV LVE++ P + G + +NK++G +V +Q + T A++
Sbjct: 713 TYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYL 772
Query: 690 PLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQD 724
P+N FG++ LR T G+ M + + + D
Sbjct: 773 PVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSD 807
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 21/154 (13%)
Query: 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGI 126
+ + +RN+ + AH+D GK+TLT+ ++ G I + G D+ E+E+GI
Sbjct: 14 DKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISA-----AKAGEARFTDTRKDEQERGI 68
Query: 127 TIQSAATSCAWK----------------DYQINIIDTPGHVDFTVEVERALRVLDGAILV 170
TI+S A S + + IN+ID+PGHVDF+ EV ALRV DGA++V
Sbjct: 69 TIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVV 128
Query: 171 LCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204
+ ++ GV Q+ TV RQ + + INK+DR
Sbjct: 129 VDTIEGVCVQTETVLRQALGERIKPVVVINKVDR 162
>pdb|1JQS|C Chain C, Fitting Of L11 Protein And Elongation Factor G (Domain G'
And V) In The Cryo-Em Map Of E. Coli 70s Ribosome Bound
With Ef-G And Gmppcp, A Nonhydrolysable Gtp Analog
Length = 68
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 45/68 (66%)
Query: 648 MLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMTQG 707
M VE+ P E+ G V GD+N R+G I+G + G+ VI A VPL MFGY+T LRS TQG
Sbjct: 1 MRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQG 60
Query: 708 KGEFTMEY 715
+G F M +
Sbjct: 61 RGSFVMFF 68
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 74/158 (46%), Gaps = 7/158 (4%)
Query: 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAAT 133
N+G H+D GKTTLT + F T + EV+ +D ER +GITI +A
Sbjct: 13 NVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDY----GDIDKAPEERARGITINTAHV 68
Query: 134 SCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEV 193
+ +D PGH D+ + +DGAILV+ + G Q+ R+ V
Sbjct: 69 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 194 PRL-AFINKLDRMGADPWKVLDQARSKLRHHCAAVQVP 230
P + F+NK+D M DP ++LD ++R + P
Sbjct: 129 PYIVVFMNKVD-MVDDP-ELLDLVEMEVRDLLNQYEFP 164
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 74/158 (46%), Gaps = 7/158 (4%)
Query: 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAAT 133
N+G H+D GKTTLT + F T + EV+ +D ER +GITI +A
Sbjct: 13 NVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDY----GDIDKAPEERARGITINTAHV 68
Query: 134 SCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEV 193
+ +D PGH D+ + +DGAILV+ + G Q+ R+ V
Sbjct: 69 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 194 PRL-AFINKLDRMGADPWKVLDQARSKLRHHCAAVQVP 230
P + F+NK+D M DP ++LD ++R + P
Sbjct: 129 PYIVVFMNKVD-MVDDP-ELLDLVEMEVRDLLNQYEFP 164
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 7/149 (4%)
Query: 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAAT 133
N+G H+D GKTTLT + + T + EV+ +D ER +GITI +A
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDY----GDIDKAPEERARGITINTAHV 68
Query: 134 SCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEV 193
+ +D PGH D+ + +DGAILV+ + G Q+ R+ V
Sbjct: 69 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 194 PRL-AFINKLDRMGADPWKVLDQARSKLR 221
P + F+NK+D M DP ++LD ++R
Sbjct: 129 PYIVVFMNKVD-MVDDP-ELLDLVEMEVR 155
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 7/149 (4%)
Query: 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAAT 133
N+G H+D GKTTLT + + T + EV+ +D ER +GITI +A
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDY----GDIDKAPEERARGITINTAHV 68
Query: 134 SCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEV 193
+ +D PGH D+ + +DGAILV+ + G Q+ R+ V
Sbjct: 69 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 194 PRL-AFINKLDRMGADPWKVLDQARSKLR 221
P + F+NK+D M DP ++LD ++R
Sbjct: 129 PYIVVFMNKVD-MVDDP-ELLDLVEMEVR 155
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 70/155 (45%), Gaps = 22/155 (14%)
Query: 74 NIGISAHIDSGKTTLTERILFYTGRI---------HEIHEV-RGRDGVGAKMDSMDLERE 123
N+ + H+DSGK+T T +++ G I E E+ +G +D + ERE
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 68
Query: 124 KGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT 183
+GITI A YQ+ +ID PGH DF + D AIL++ G I+
Sbjct: 69 RGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGIS 128
Query: 184 VDRQMRRYEVPRLAF----------INKLDRMGAD 208
D Q R + + LAF +NK+D + D
Sbjct: 129 KDGQTREHAL--LAFTLGVRQLIVAVNKMDSVKWD 161
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 21/147 (14%)
Query: 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITI 128
+ER + I H+D GKTTL + I R ++ E + GIT
Sbjct: 5 VERPPVVTIMGHVDHGKTTLLDAI-----RHSKVTE----------------QEAGGITQ 43
Query: 129 QSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM 188
A D +I +DTPGH FT R +V D ILV+ + GV Q++
Sbjct: 44 HIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHA 103
Query: 189 RRYEVPRLAFINKLDRMGADPWKVLDQ 215
+ VP + INK+D+ A+P +V+ +
Sbjct: 104 KAANVPIIVAINKMDKPEANPDRVMQE 130
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 7/149 (4%)
Query: 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAAT 133
N+G H+D GKTTLT + + + EV+ +D ER +GITI +A
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDY----GDIDKAPEERARGITINTAHV 68
Query: 134 SCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEV 193
+ +D PGH D+ + +DGAILV+ + G Q+ R+ V
Sbjct: 69 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 194 PRL-AFINKLDRMGADPWKVLDQARSKLR 221
P + F+NK+D M DP ++LD ++R
Sbjct: 129 PYIVVFMNKVD-MVDDP-ELLDLVEMEVR 155
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 7/149 (4%)
Query: 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAAT 133
N+G H+D GKTTLT + + + EV+ +D ER +GITI +A
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDY----GDIDKAPEERARGITINTAHV 68
Query: 134 SCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEV 193
+ +D PGH D+ + +DGAILV+ + G Q+ R+ V
Sbjct: 69 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 194 PRL-AFINKLDRMGADPWKVLDQARSKLR 221
P + F+NK+D M DP ++LD ++R
Sbjct: 129 PYIVVFMNKVD-MVDDP-ELLDLVEMEVR 155
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 7/149 (4%)
Query: 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAAT 133
N+G H+D GKTTLT + + + EV+ +D ER +GITI +A
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDY----GDIDKAPEERARGITINTAHV 68
Query: 134 SCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEV 193
+ +D PGH D+ + +DGAILV+ + G Q+ R+ V
Sbjct: 69 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 194 PRL-AFINKLDRMGADPWKVLDQARSKLR 221
P + F+NK+D M DP ++LD ++R
Sbjct: 129 PYIVVFMNKVD-MVDDP-ELLDLVEMEVR 155
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 7/158 (4%)
Query: 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAAT 133
N+G H+D GKTTLT + + + EV+ +D ER +GITI +A
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDY----GDIDKAPEERARGITINTAHV 68
Query: 134 SCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEV 193
+ +D PGH D+ + +DGAILV+ + G Q+ R+ V
Sbjct: 69 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 194 PRL-AFINKLDRMGADPWKVLDQARSKLRHHCAAVQVP 230
P + F+NK+D M DP ++LD ++R + P
Sbjct: 129 PYIVVFMNKVD-MVDDP-ELLDLVEMEVRDLLNQYEFP 164
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 7/158 (4%)
Query: 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAAT 133
N+G H+D GKTTLT + + + EV+ +D ER +GITI +A
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDY----GDIDKAPEERARGITINTAHV 68
Query: 134 SCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEV 193
+ +D PGH D+ + +DGAILV+ + G Q+ R+ V
Sbjct: 69 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 128
Query: 194 PRL-AFINKLDRMGADPWKVLDQARSKLRHHCAAVQVP 230
P + F+NK+D M DP ++LD ++R + P
Sbjct: 129 PYIVVFMNKVD-MVDDP-ELLDLVEMEVRDLLNQYEFP 164
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 7/149 (4%)
Query: 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAAT 133
N+G H+D GKTTLT + + + EV+ +D ER +GITI +A
Sbjct: 14 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDY----GDIDKAPEERARGITINTAHV 69
Query: 134 SCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEV 193
+ +D PGH D+ + +DGAILV+ + G Q+ R+ V
Sbjct: 70 EYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV 129
Query: 194 PRL-AFINKLDRMGADPWKVLDQARSKLR 221
P + F+NK+D M DP ++LD ++R
Sbjct: 130 PYIVVFMNKVD-MVDDP-ELLDLVEMEVR 156
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 14/143 (9%)
Query: 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKM-----------DSMDLER 122
N+ + H+D GK+TL R+L G I E V+ + K+ D + ER
Sbjct: 8 NLIVIGHVDHGKSTLVGRLLMDRGFIDE-KTVKEAEEAAKKLGKESEKFAFLLDRLKEER 66
Query: 123 EKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSI 182
E+G+TI K Y IID PGH DF + D AILV+ + G +
Sbjct: 67 ERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGM 126
Query: 183 TVDRQMRRYEVPRLAFINKLDRM 205
+V+ Q R + + LA LD++
Sbjct: 127 SVEGQTREHII--LAKTMGLDQL 147
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 14/138 (10%)
Query: 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAAT 133
N+GI HID GKTTL++ + EI D + +++GITI +
Sbjct: 21 NLGIFGHIDHGKTTLSKVLT-------EIASTSAHD-------KLPESQKRGITIDIGFS 66
Query: 134 SCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEV 193
+ ++Y+I ++D PGH D V A ++D A++V+ + G ++Q+ + + +
Sbjct: 67 AFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNI 126
Query: 194 PRLAFINKLDRMGADPWK 211
P + I K D G + K
Sbjct: 127 PIIVVITKSDNAGTEEIK 144
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 74 NIGISAHIDSGKTTLTERILFYTGRIHEIH--------EVRGRDGV--GAKMDSMDLERE 123
N+ + H+D GK+TL +L+ G I E + RG++ +D M ERE
Sbjct: 11 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 70
Query: 124 KGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT 183
+GITI K Y IID PGH DF + D AILV+ + G ++
Sbjct: 71 RGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMS 130
Query: 184 VDRQMRRY 191
+ Q R +
Sbjct: 131 TEGQTREH 138
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 74 NIGISAHIDSGKTTLTERILFYTGRIHEIH--------EVRGRDGV--GAKMDSMDLERE 123
N+ + H+D GK+TL +L+ G I E + RG++ +D M ERE
Sbjct: 8 NLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERE 67
Query: 124 KGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT 183
+GITI K Y IID PGH DF + D AILV+ + G ++
Sbjct: 68 RGITIDLTFMKFETKKYVFTIIDAPGHRDFVKNMITGASQADAAILVVSARKGEFEAGMS 127
Query: 184 VDRQMRRY 191
+ Q R +
Sbjct: 128 TEGQTREH 135
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 66 KESMERLR---NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLER 122
KE ER + N+G H+D GKTTLT I + + R D ++D+ E+
Sbjct: 3 KEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYG-GAARAFD----QIDNAPEEK 57
Query: 123 EKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSI 182
+GITI ++ +D PGH D+ + +DGAILV+ + G Q+
Sbjct: 58 ARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTR 117
Query: 183 TVDRQMRRYEVPR-LAFINKLD 203
R+ VP + F+NK D
Sbjct: 118 EHILLGRQVGVPYIIVFLNKCD 139
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 66 KESMERLR---NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLER 122
KE ER + N+G H+D GKTTLT I + + R D ++D+ E+
Sbjct: 2 KEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYG-GAARAFD----QIDNAPEEK 56
Query: 123 EKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSI 182
+GITI ++ +D PGH D+ + +DGAILV+ + G Q+
Sbjct: 57 ARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTR 116
Query: 183 TVDRQMRRYEVPR-LAFINKLD 203
R+ VP + F+NK D
Sbjct: 117 EHILLGRQVGVPYIIVFLNKCD 138
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 66 KESMERLR---NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLER 122
KE ER + N+G H+D GKTTLT I + + R D ++D+ E+
Sbjct: 2 KEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYG-GAARAFD----QIDNAPEEK 56
Query: 123 EKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSI 182
+GITI ++ +D PGH D+ + +DGAILV+ + G Q+
Sbjct: 57 ARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTR 116
Query: 183 TVDRQMRRYEVPR-LAFINKLD 203
R+ VP + F+NK D
Sbjct: 117 EHILLGRQVGVPYIIVFLNKCD 138
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 66 KESMERLR---NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLER 122
KE ER + N+G H+D GKTTLT I + + R D ++D+ E+
Sbjct: 2 KEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYG-GAARAFD----QIDNAPEEK 56
Query: 123 EKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSI 182
+GITI ++ +D PGH D+ + +DGAILV+ + G Q+
Sbjct: 57 ARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTR 116
Query: 183 TVDRQMRRYEVPR-LAFINKLD 203
R+ VP + F+NK D
Sbjct: 117 EHILLGRQVGVPYIIVFLNKCD 138
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 66 KESMERLR---NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLER 122
KE ER + N+G H+D GKTTLT I + + R D ++D+ E+
Sbjct: 3 KEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYG-GAARAFD----QIDNAPEEK 57
Query: 123 EKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSI 182
+GITI ++ +D PGH D+ + +DGAILV+ + G Q+
Sbjct: 58 ARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTR 117
Query: 183 TVDRQMRRYEVPR-LAFINKLD 203
R+ VP + F+NK D
Sbjct: 118 EHILLGRQVGVPYIIVFLNKCD 139
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 66 KESMERLR---NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLER 122
KE ER + N+G H+D GKTTLT I + + R D ++D+ E+
Sbjct: 287 KEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYG-GAARAFD----QIDNAPEEK 341
Query: 123 EKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSI 182
+GITI ++ +D PGH D+ + +DGAILV+ + G Q+
Sbjct: 342 ARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTR 401
Query: 183 TVDRQMRRYEVPR-LAFINKLD 203
R+ VP + F+NK D
Sbjct: 402 EHILLGRQVGVPYIIVFLNKCD 423
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Query: 66 KESMERLR---NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLER 122
KE ER + N+G H+D GKTTLT I + + R D ++D+ E+
Sbjct: 287 KEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYG-GAARAFD----QIDNAPEEK 341
Query: 123 EKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSI 182
+GITI ++ +D PGH D+ + +DGAILV+ + G Q+
Sbjct: 342 ARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTR 401
Query: 183 TVDRQMRRYEVPR-LAFINKLD 203
R+ VP + F+NK D
Sbjct: 402 EHILLGRQVGVPYIIVFLNKCD 423
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 20/138 (14%)
Query: 75 IGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATS 134
+ I H+D GKTTL +++ R A M++ + + G + S +
Sbjct: 7 VTIMGHVDHGKTTLLDKL---------------RKTQVAAMEAGGITQHIGAFLVSLPSG 51
Query: 135 CAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP 194
+I +DTPGH F+ R +V D ILV+ + GV Q++ + + VP
Sbjct: 52 -----EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVP 106
Query: 195 RLAFINKLDRMGADPWKV 212
+ INK D+ ADP KV
Sbjct: 107 IVLAINKCDKAEADPEKV 124
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 6/131 (4%)
Query: 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAAT 133
N+G H+D GKTTLT I + + R D ++D+ E+ +GITI ++
Sbjct: 5 NVGTIGHVDHGKTTLTAAITTVLAKTYG-GAARAFD----QIDNAPEEKARGITINTSHV 59
Query: 134 SCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEV 193
+D PGH D+ + +DGAILV+ + G Q+ R+ V
Sbjct: 60 EYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGV 119
Query: 194 PR-LAFINKLD 203
P + F+NK D
Sbjct: 120 PYIIVFLNKCD 130
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 13/152 (8%)
Query: 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAAT 133
N+G H+D GKTTLT + + + EV+ +D ER +GITI +A
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENRNVEVKDY----GDIDKAREERARGITINTAHV 68
Query: 134 SCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQS---ITVDRQM-R 189
+ +D GH D+ + +DGAILV+ + G Q+ I + RQ+
Sbjct: 69 EYETAKRHYSHVDCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTREHILLARQVGV 128
Query: 190 RYEVPRLAFINKLDRMGADPWKVLDQARSKLR 221
RY V F+NK+D + D ++LD ++R
Sbjct: 129 RYIV---VFMNKVDMV--DDRELLDLVEMEVR 155
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 61/139 (43%), Gaps = 22/139 (15%)
Query: 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAK------MDSMDLEREKGIT 127
N+G H+D GKTTLT I +G GAK +D+ ER +GIT
Sbjct: 5 NVGTIGHVDHGKTTLTAAITKILA-----------EGGGAKFKKYEEIDNAPEERARGIT 53
Query: 128 IQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQS---ITV 184
I +A + D PGH D+ + LDG ILV+ + G Q+ + +
Sbjct: 54 INAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLL 113
Query: 185 DRQMRRYEVPRLAFINKLD 203
RQ+ V + ++NK D
Sbjct: 114 ARQIGVEHV--VVYVNKAD 130
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 61/127 (48%), Gaps = 13/127 (10%)
Query: 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIH-EVRGRDG--VGAKMDSMDL--- 120
E E LR + ++D GK+TL R+L + I+E H E RD G D +DL
Sbjct: 20 ERKEXLRFL-TCGNVDDGKSTLIGRLLHDSKXIYEDHLEAITRDSKKSGTTGDDVDLALL 78
Query: 121 ------EREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSV 174
ERE+GITI A + + I DTPGH +T D AI+++ +
Sbjct: 79 VDGLQAEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNXATGASTCDLAIILVDAR 138
Query: 175 GGVQSQS 181
GVQ+Q+
Sbjct: 139 YGVQTQT 145
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 10/107 (9%)
Query: 77 ISAHIDSGKTTLTERILFYTGRIH-----EIHEVRGRDGVGA-----KMDSMDLEREKGI 126
++ H+DSGK+T+ RI+F G I+ ++H G G+ +D+ + ER +G+
Sbjct: 182 VTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGV 241
Query: 127 TIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCS 173
T+ A+T+ I D PGH DF + D A+LV+ S
Sbjct: 242 TMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDS 288
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 60/139 (43%), Gaps = 22/139 (15%)
Query: 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAK------MDSMDLEREKGIT 127
N+G H+D GKTTLT I +G GAK +D+ ER +GIT
Sbjct: 16 NVGTIGHVDHGKTTLTAAITKILA-----------EGGGAKFKKYEEIDNAPEERARGIT 64
Query: 128 IQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQS---ITV 184
I +A + D PGH D+ LDG ILV+ + G Q+ + +
Sbjct: 65 INAAHVEYSTAARHYAHTDCPGHADYVKNXITGTAPLDGCILVVAANDGPXPQTREHLLL 124
Query: 185 DRQMRRYEVPRLAFINKLD 203
RQ+ V + ++NK D
Sbjct: 125 ARQIGVEHV--VVYVNKAD 141
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 59/142 (41%), Gaps = 23/142 (16%)
Query: 66 KESMERLR---NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLER 122
KE ER + N+G H+D GKTTLT I + + GA
Sbjct: 2 KEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYG----------GAA-------- 43
Query: 123 EKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSI 182
+GITI ++ +D PGH D+ + +DGAILV+ + G Q+
Sbjct: 44 -RGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTR 102
Query: 183 TVDRQMRRYEVPR-LAFINKLD 203
R+ VP + F+NK D
Sbjct: 103 EHILLGRQVGVPYIIVFLNKCD 124
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 80 HIDSGKTTLTERILFYTGRIHEIH--------EVRGRDGV--GAKMDSMDLEREKGITIQ 129
H+D+GK+TL R+L+ +++ E G+ MD + ERE+G+T+
Sbjct: 175 HVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVS 234
Query: 130 SAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVL-CSVGGVQS 179
+ + I+D PGH DF + D AIL + CS +S
Sbjct: 235 ICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFES 285
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 11/108 (10%)
Query: 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAAT 133
NIG+ H+D GKTTLT+ + TG + H R G+ K+ D E + +T
Sbjct: 13 NIGMVGHVDHGKTTLTKAL---TGVWTDTHSEELRRGITIKIGFADAEIRRCSNCGRYST 69
Query: 134 S--CAWKDYQ------INIIDTPGHVDFTVEVERALRVLDGAILVLCS 173
S C + ++ ++ ID+PGH + ++DGAILV+ +
Sbjct: 70 SPICPYCGHETEFIRRVSFIDSPGHEALMTTMLAGASLMDGAILVIAA 117
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 80 HIDSGKTTLTERILFYTGRIHEIH--------EVRGRDGV--GAKMDSMDLEREKGITIQ 129
H+D+GK+TL R+L+ +++ E G+ MD + ERE+G+T+
Sbjct: 41 HVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVS 100
Query: 130 SAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVL-CSVGGVQS 179
+ + I+D PGH DF + D AIL + CS +S
Sbjct: 101 ICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFES 151
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAAT 133
NIG+ H+D GKTTLT+ + TG + H R G+ K+ D E + +T
Sbjct: 12 NIGMVGHVDHGKTTLTKAL---TGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYST 68
Query: 134 S--CAWKDYQ------INIIDTPGHVDFTVEVERALRVLDGAILVLCS 173
S C + ++ ++ ID PGH + ++DGAILV+ +
Sbjct: 69 SPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAA 116
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAAT 133
NIG+ H+D GKTTLT+ + TG + H R G+ K+ D E + +T
Sbjct: 12 NIGMVGHVDHGKTTLTKAL---TGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYST 68
Query: 134 S--CAWKDYQ------INIIDTPGHVDFTVEVERALRVLDGAILVLCS 173
S C + ++ ++ ID PGH + ++DGAILV+ +
Sbjct: 69 SPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAA 116
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 80 HIDSGKTTLTERILFYTGRIHEIH--------EVRGRDGVGAKM--DSMDLEREKGITIQ 129
H+D+GK+TL R+L+ +++ E G+ D + ERE+G+T+
Sbjct: 41 HVDAGKSTLXGRLLYDLNIVNQSQLRKLQRESETXGKSSFKFAWIXDQTNEERERGVTVS 100
Query: 130 SAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVL-CSVGGVQS 179
+ + I+D PGH DF + D AIL + CS +S
Sbjct: 101 ICTSHFSTHRANFTIVDAPGHRDFVPNAIXGISQADXAILCVDCSTNAFES 151
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 21/141 (14%)
Query: 75 IGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATS 134
+ I H+D GKT+L E I G G GIT A
Sbjct: 7 VTIMGHVDHGKTSLLEYI-------RSTKVASGEAG--------------GITQHIGAYH 45
Query: 135 CAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP 194
++ I +DTPGH FT R + D +LV+ + GV Q+I + + +VP
Sbjct: 46 VETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVP 105
Query: 195 RLAFINKLDRMGADPWKVLDQ 215
+ +NK+D+ ADP +V ++
Sbjct: 106 VVVAVNKIDKPEADPDRVKNE 126
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 11/108 (10%)
Query: 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAAT 133
NIG H+D GKTTLT+ + TG + H R G+ K+ D E + +T
Sbjct: 12 NIGXVGHVDHGKTTLTKAL---TGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYST 68
Query: 134 S--CAWKDYQ------INIIDTPGHVDFTVEVERALRVLDGAILVLCS 173
S C + ++ ++ ID PGH + DGAILV+ +
Sbjct: 69 SPVCPYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAILVIAA 116
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 11/108 (10%)
Query: 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKG-----ITI 128
NIG+ H+D GKT+LT+ + TG + H R G+ ++ D E K T
Sbjct: 10 NIGMVGHVDHGKTSLTKAL---TGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTT 66
Query: 129 QSAATSC-AWKDY--QINIIDTPGHVDFTVEVERALRVLDGAILVLCS 173
+ +C A ++ +++ +D+PGH + ++DGAILV+ +
Sbjct: 67 KPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAA 114
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
Query: 74 NIGISAHIDSGKTTLTERILFYTG----RIHEIHEVRGRDG------VGAKMDSMDLERE 123
NI H+D+GK+TL ILF TG R E E ++ + +DS ERE
Sbjct: 45 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEERE 104
Query: 124 KGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG 176
KG T++ + + +++D PGH + + D +LV+ + G
Sbjct: 105 KGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG 157
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 16/113 (14%)
Query: 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMD--------LEREKG 125
NIG+ H+D GKTTL + I TG H + G+ K+ + ++ +
Sbjct: 10 NIGVVGHVDHGKTTLVQAI---TGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEA 66
Query: 126 ITIQSAATSCAWKD-----YQINIIDTPGHVDFTVEVERALRVLDGAILVLCS 173
+ + SC D +I+ ID PGH + ++DGAILV+ +
Sbjct: 67 YVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAA 119
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 16/113 (14%)
Query: 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMD--------LEREKG 125
NIG+ H+D GKTTL + I TG H + G+ K+ + ++ +
Sbjct: 11 NIGVVGHVDHGKTTLVQAI---TGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEA 67
Query: 126 ITIQSAATSCAWKD-----YQINIIDTPGHVDFTVEVERALRVLDGAILVLCS 173
+ + SC D +I+ ID PGH + ++DGAILV+ +
Sbjct: 68 YVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAA 120
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 74 NIGISAHIDSGKTTLTERILFYTG----RIHEIHEVRGRDG------VGAKMDSMDLERE 123
N+ H+D+GK+T+ +I++ TG R E +E ++ + +D+ ER+
Sbjct: 19 NVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 78
Query: 124 KGITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG 176
KG T++ + I+D PGH F + D A+LV+ + G
Sbjct: 79 KGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKG 131
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 11/108 (10%)
Query: 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVR---GRDGVGAKMDSMDLEREKGITIQS 130
NIG+ H+D GKTTL + I H ++ +G ++ + +
Sbjct: 10 NIGVVGHVDHGKTTLVQAITGIWTSKHSEETIKLGYAETNIGV---CESCKKPEAYVTEP 66
Query: 131 AATSCAWKD-----YQINIIDTPGHVDFTVEVERALRVLDGAILVLCS 173
+ SC D +I+ ID PGH + ++DGAILV+ +
Sbjct: 67 SCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAA 114
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 62/145 (42%), Gaps = 19/145 (13%)
Query: 75 IGISAHIDSGKTTLTERILFYTGRIHEIHEVRG-RDGVGAKMDSMDL------EREKGIT 127
+ + H+D GKTTL + I G E G +GA MD+ + K +
Sbjct: 8 VSVLGHVDHGKTTLLDHI---RGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFS 64
Query: 128 IQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ 187
I+ + IDTPGH FT +R + D AIL++ G + Q+
Sbjct: 65 IRETLPGLFF-------IDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI 117
Query: 188 MRRYEVPRLAFINKLDRMGADPWKV 212
+R Y P + NK+DR+ W+V
Sbjct: 118 LRMYRTPFVVAANKIDRIHG--WRV 140
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 145 IDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204
IDTPGH FT +R + D AIL++ G + Q+ +R Y P + NK+DR
Sbjct: 75 IDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRXYRTPFVVAANKIDR 134
Query: 205 MGADPWKV 212
+ W+V
Sbjct: 135 IHG--WRV 140
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 11/105 (10%)
Query: 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAAT 133
NIG+ H+D GKTTL + I TG +G ++ + + +
Sbjct: 10 NIGVVGHVDHGKTTLVQAI---TGIWTSKKLGYAETNIGV---CESCKKPEAYVTEPSCK 63
Query: 134 SCAWKD-----YQINIIDTPGHVDFTVEVERALRVLDGAILVLCS 173
SC D +I+ ID PGH + ++DGAILV+ +
Sbjct: 64 SCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAA 108
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 125 GITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITV 184
GITI ++ +D PGH D+ + +DGAILV+ + G Q+
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 185 DRQMRRYEVPR-LAFINKLD 203
R+ VP + F+NK D
Sbjct: 61 ILLGRQVGVPYIIVFLNKCD 80
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 125 GITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITV 184
GITI ++ +D PGH D+ + +DGAILV+ + G Q+
Sbjct: 1 GITINTSHVEYDTPTRHYAHVDXPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREH 60
Query: 185 DRQMRRYEVPR-LAFINKLD 203
R+ VP + F+NK D
Sbjct: 61 ILLGRQVGVPYIIVFLNKCD 80
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 120 LEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVE---------VERALRVLDGAILV 170
+E G+T +S W +Y N+IDT G +D E E A+ D I +
Sbjct: 51 VEDTPGVTRDRIYSSAEWLNYDFNLIDT-GGIDIGDEPFLAQIRQQAEIAMDEADVIIFM 109
Query: 171 LCSVGGVQSQSITVDRQMRRYEVPRLAFINKLD 203
+ GV + V + + R + P + +NKLD
Sbjct: 110 VNGREGVTAADEEVAKILYRTKKPVVLAVNKLD 142
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 14/105 (13%)
Query: 527 VTKRAEFDYLHKKQSGGQGQYGRVIGYIE----------PLPLGSPAKFEFENLLVGQAI 576
V+ A + S G GQY +I IE + LG P +V +A+
Sbjct: 84 VSPSASLYAVKVLDSTGSGQYSWIINGIEWAISNNMDVINMSLGGPTGSTALKTVVDKAV 143
Query: 577 PSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSE 621
S + A G + ++ S S +G+P +Y + A AV+SS
Sbjct: 144 SSGIVVAAAAGNEGSSGSTSTVGYPAKYPSTI----AVGAVNSSN 184
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 541 SGGQGQYGRVIGYIE----------PLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKE 590
S G GQY +I IE + LG P +V +A+ S + A G +
Sbjct: 98 STGSGQYSWIINGIEWAISNNMDVINMSLGGPTGSTALKTVVDKAVSSGIVVAAAAGNEG 157
Query: 591 AANSGSLIGHPVEYLRVVLTDGASHAVDSSE 621
++ S S +G+P +Y + A AV+SS
Sbjct: 158 SSGSTSTVGYPAKYPSTI----AVGAVNSSN 184
>pdb|3E3X|A Chain A, The C-Terminal Part Of Bipa Protein From Vibrio
Parahaemolyticus Rimd 2210633
Length = 332
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 643 ILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHV-PLNNMFGYSTAL 701
+ EP V + V E QG + +I R G + +G V + P + G+ T
Sbjct: 123 LXEPFETVTIDVXEEHQGGIXENIGLRXGELXDXAPDGKGRVRXDFIXPSRGLIGFQTEF 182
Query: 702 RSMTQGKGEFTMEYKEHAP 720
++T G G + + P
Sbjct: 183 XTLTSGSGLLYHTFDHYGP 201
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 468 LNRFQKE---DPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRV 521
L R +KE + RV + + +SG GELHL I +E RRE + V +P V
Sbjct: 59 LERLEKELVHNVALRVEQTDDPDKFRVSGRGELHLSILIENXRRE-GFELAVSRPEV 114
>pdb|1XPI|A Chain A, Crystal Structure Of The Catalytic Domain Of E. Coli
Pseudouridine Synthase Rluc
pdb|1XPI|B Chain B, Crystal Structure Of The Catalytic Domain Of E. Coli
Pseudouridine Synthase Rluc
Length = 231
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 620 SELAFKMAAIYAFRQCYAAAKPVILEPVM--LVELKVPTEFQGSVAGDINKRKGMIVGND 677
SE FK+ YAF A V PV +++V T++ G + R G D
Sbjct: 128 SETRFKVEERYAF------ATLVRCSPVTGRTHQIRVHTQYAGHPIA-FDDRYG-----D 175
Query: 678 QEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTHNA 735
+E D + A LN +F ++ AL+ G GE + AP+ + ++ L K NA
Sbjct: 176 REFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVM---RIEAPMDEGLKRCLQKLRNA 230
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 541 SGGQGQYGRVIGYIE----------PLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKE 590
S G GQY +I IE + LG P +V +A+ S + A G +
Sbjct: 98 STGSGQYSWIINGIEWAISNNMDVINMSLGGPTGSTALKTVVDKAVSSGIVVAAAAGNEG 157
Query: 591 AANSGSLIGHPVEYLRVV 608
++ S S +G+P +Y +
Sbjct: 158 SSGSTSTVGYPAKYPSTI 175
>pdb|3TL8|B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|F Chain F, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|K Chain K, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|L Chain L, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 117
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 305 LEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQ 356
L A+ R + R IP+ +GSA +N G+ P +D S + P N AL++
Sbjct: 57 LRTALERHVMQRLPIPLDIGSALQNVGINPSIDLGESLVQHPLLNLNVALNR 108
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 120 LEREKGITIQSAATSCAWKDYQINIIDTPGHVD-----FTVEVERALRV-LDGAILVLCS 173
+E G+T +S W +Y N+IDT G +D F ++ + + D A +++
Sbjct: 31 VEDTPGVTRDRIYSSAEWLNYDFNLIDT-GGIDIGDEPFLAQIRQQAEIAXDEADVIIFX 89
Query: 174 VG---GVQSQSITVDRQMRRYEVPRLAFINKLD 203
V GV + V + + R + P + +NKLD
Sbjct: 90 VNGREGVTAADEEVAKILYRTKKPVVLAVNKLD 122
>pdb|3SGI|A Chain A, Crystal Structure Of Dna Ligase A Brct Domain Deleted
Mutant Of Mycobacterium Tuberculosis
Length = 615
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 14/92 (15%)
Query: 90 ERILFYTGRIHEI-HEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK----DYQINI 144
ERI ++ HE+ HE+ DGV K+D + L+R G T ++ + A+K + Q +
Sbjct: 278 ERIDYWGEHRHEVDHEI---DGVVVKVDEVALQRRLGSTSRAPRWAIAYKYPPEEAQTKL 334
Query: 145 IDTPGHVDFTVEVERALRVLDGAILVLCSVGG 176
+ D V V R R+ A + V G
Sbjct: 335 L------DIRVNVGRTGRITPFAFMTPVKVAG 360
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,535,673
Number of Sequences: 62578
Number of extensions: 941724
Number of successful extensions: 2321
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 2045
Number of HSP's gapped (non-prelim): 140
length of query: 740
length of database: 14,973,337
effective HSP length: 106
effective length of query: 634
effective length of database: 8,340,069
effective search space: 5287603746
effective search space used: 5287603746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)